If more than 50 genes/sequences are provided as input, then the associated running time can take some time. Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes. After processing you will be send an email with a link to the created phylogenetic tree.
The selection modi are exclusive: please choose either Gene selection or Species selection.
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000959', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '622', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p07100' => 'bna', 'A03p11720' => 'bna', 'A05p08300' => 'bna', 'A05p13380' => 'bna', 'A09p54130' => 'bna', 'A10p16690' => 'bna', 'A10p16700' => 'bna', 'A10p33390' => 'bna', 'Aa31LG10G16020' => 'aar', 'Aa31LG1G11810' => 'aar', 'Aa31LG1G11830' => 'aar', 'Aa31LG1G22510' => 'aar', 'Aa31LG5G4890' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5793' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2310' => 'aag', 'Actinidia08499' => 'ach', 'Actinidia11262' => 'ach', 'Actinidia23926' => 'ach', 'Actinidia34420' => 'ach', 'Actinidia36970' => 'ach', 'Ah.02g111220' => 'amhyb', 'Ah.15g097750' => 'amhyb', 'AL4G27500' => 'aly', 'AL6G11470' => 'aly', 'AL8G35950' => 'aly', 'AL8G35960' => 'aly', 'AL8G35970' => 'aly', 'Aqoxy1G00912' => 'aox', 'Aqoxy2G02253' => 'aox', 'Aqoxy2G02411' => 'aox', 'Aqoxy5G00485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BZ66YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K8ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM4FUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6BF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HFV7XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25JBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0YNNV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MAKK6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P70IT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP2Z6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V61LZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YWP64R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3S9AI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7PGHH' => 'arhy', 'AT2G32150' => 'ath', 'AT3G62040' => 'ath', 'AT5G02230' => 'ath', 'AT5G59480' => 'ath', 'AT5G59490' => 'ath', 'ATR0332G060' => 'atr', 'ATR0559G190' => 'atr', 'ATR0693G294' => 'atr', 'Atru.chr3.3975' => 'acertr', 'Atru.chr3.3976' => 'acertr', 'Atru.chr3.3977' => 'acertr', 'Atru.chr4.2498' => 'acertr', 'Atru.chr5.838' => 'acertr', 'Atru.chr8.1990' => 'acertr', 'Atru.chr8.1991' => 'acertr', 'Atru.chr8.1992' => 'acertr', 'AUR62001759' => 'cqu', 'AUR62009545' => 'cqu', 'AUR62010474' => 'cqu', 'AUR62025820' => 'cqu', 'AUR62030422' => 'cqu', 'AUR62033605' => 'cqu', 'AUR62038615' => 'cqu', 'AUR62041347' => 'cqu', 'BcaB01g04574' => 'bca', 'BcaB02g09263' => 'bca', 'BcaB02g10453' => 'bca', 'BcaB05g22513' => 'bca', 'BcaB08g36253' => 'bca', 'BcaB08g36254' => 'bca', 'BcaC01g06519' => 'bca', 'BcaC02g11889' => 'bca', 'BcaC03g14010' => 'bca', 'BcaC03g18439' => 'bca', 'BcaC04g19765' => 'bca', 'BcaC09g48432' => 'bca', 'BcaNung07302' => 'bca', 'BolC2t06040H' => 'bol', 'BolC2t07346H' => 'bol', 'BolC3t13817H' => 'bol', 'BolC4t22625H' => 'bol', 'BolC4t23297H' => 'bol', 'BolC8t51278H' => 'bol', 'BolC9t58050H' => 'bol', 'BolC9t58051H' => 'bol', 'BolC9t60163H' => 'bol', 'BraA02t04712Z' => 'bra', 'BraA02t05791Z' => 'bra', 'BraA03t10483Z' => 'bra', 'BraA05t19795Z' => 'bra', 'BraA05t20276Z' => 'bra', 'BraA09t40827Z' => 'bra', 'BraA10t43750Z' => 'bra', 'BraA10t43751Z' => 'bra', 'BraA10t45370Z' => 'bra', 'C02p00400' => 'bna', 'C02p12460' => 'bna', 'C03p13680' => 'bna', 'C04p10270' => 'bna', 'C04p17500' => 'bna', 'C08p37010' => 'bna', 'C09p51880' => 'bna', 'C09p51890' => 'bna', 'C09p74300' => 'bna', 'CAN.G179.26' => 'can', 'CAN.G3384.1' => 'can', 'CAN.G394.68' => 'can', 'CAN.G907.13' => 'can', 'CANSAT11G0012' => 'cansat', 'CANSAT25G1586' => 'cansat', 'CANSAT35G0735' => 'cansat', 'CANSAT54G0556' => 'cansat', 'CANSAT64G0356' => 'cansat', 'CANSAT78G2042' => 'cansat', 'CARHR125920' => 'chi', 'CARHR131910' => 'chi', 'CARHR172390' => 'chi', 'CARHR211140' => 'chi', 'CARHR285850' => 'chi', 'CARHR285860' => 'chi', 'Carub.0004s1347' => 'cru', 'Carub.0004s1960' => 'cru', 'Carub.0005s2880' => 'cru', 'Carub.0006s0107' => 'cru', 'Carub.0008s2015' => 'cru', 'Carub.0008s2016' => 'cru', 'Carub.0008s2017' => 'cru', 'Ca_01315_v3' => 'car', 'Ca_05063_v3' => 'car', 'Ca_10231_v3' => 'car', 'Ca_10913_v3' => 'car', 'Ca_19156_v3' => 'car', 'Ca_23644_v3' => 'car', 'Ca_26735_v3' => 'car', 'Cc01_g13130' => 'ccan', 'Cc02_g21690' => 'ccan', 'Cc03_g03600' => 'ccan', 'Cc06_g02510' => 'ccan', 'CDE02G1265' => 'cde', 'CDE05G0415' => 'cde', 'CDE08G1082' => 'cde', 'Cfa005780' => 'cfa', 'Cfa011522' => 'cfa', 'Cfa011523' => 'cfa', 'Cfa015627' => 'cfa', 'Cfa017359' => 'cfa', 'Ciclev10005687m.g' => 'ccl', 'Ciclev10012173m.g' => 'ccl', 'Ciclev10021621m.g' => 'ccl', 'Ciclev10028968m.g' => 'ccl', 'Ciclev10029907m.g' => 'ccl', 'CiPaw.01G164800' => 'cil', 'CiPaw.07G083700' => 'cil', 'CiPaw.07G127000' => 'cil', 'CiPaw.07G136900' => 'cil', 'CiPaw.08G081700' => 'cil', 'CiPaw.09G194600' => 'cil', 'CiPaw.10G146500' => 'cil', 'CiPaw.13G091500' => 'cil', 'CiPaw.13G091600' => 'cil', 'ClCG00G003390' => 'cla', 'ClCG01G007220' => 'cla', 'ClCG03G001370' => 'cla', 'ClCG04G008100' => 'cla', 'ClCG06G006110' => 'cla', 'ClCG06G006130' => 'cla', 'ClCG10G021210' => 'cla', 'COL.COLO4_07648' => 'col', 'COL.COLO4_07650' => 'col', 'COL.COLO4_07651' => 'col', 'COL.COLO4_14780' => 'col', 'COL.COLO4_18546' => 'col', 'COL.COLO4_18547' => 'col', 'COL.COLO4_23103' => 'col', 'COL.COLO4_30419' => 'col', 'COL.COLO4_34232' => 'col', 'Cpa.g.sc169.20' => 'cpa', 'Cpa.g.sc57.45' => 'cpa', 'Cpa.g.sc58.124' => 'cpa', 'Cpa.g.sc58.125' => 'cpa', 'Cpa.g.sc81.118' => 'cpa', 'Cpa.g.sc81.119' => 'cpa', 'Cre12.g524700' => 'cre', 'CsaV3_1G034430' => 'csa', 'CsaV3_1G034440' => 'csa', 'CsaV3_1G034450' => 'csa', 'CsaV3_3G034830' => 'csa', 'CsaV3_4G025090' => 'csa', 'CsaV3_5G018660' => 'csa', 'CsaV3_6G038160' => 'csa', 'CSS0003447' => 'camsi', 'CSS0017840' => 'camsi', 'CSS0019260' => 'camsi', 'CSS0040375' => 'camsi', 'CSS0042533' => 'camsi', 'DCAR_005960' => 'dca', 'DCAR_012104' => 'dca', 'DCAR_012105' => 'dca', 'DCAR_012293' => 'dca', 'DCAR_015632' => 'dca', 'DCAR_024602' => 'dca', 'DCAR_028752' => 'dca', 'Dinv06261' => 'din', 'Dinv13982' => 'din', 'Dinv17029' => 'din', 'Dinv18463' => 'din', 'Dinv33181' => 'din', 'Dinv35585' => 'din', 'Dinv37161' => 'din', 'Dinv42977' => 'din', 'Dinv43122' => 'din', 'Dinv44517' => 'din', 'Duzib093G0256' => 'dzi', 'Duzib106G1254' => 'dzi', 'Duzib128G1789' => 'dzi', 'Duzib133G0633' => 'dzi', 'Duzib138G0510' => 'dzi', 'Duzib150G1084' => 'dzi', 'Duzib168G0488' => 'dzi', 'Duzib168G1523' => 'dzi', 'Duzib170G0133' => 'dzi', 'ECA234G1433' => 'eca', 'ECA236G1432' => 'eca', 'ECA236G2256' => 'eca', 'ECA236G2365' => 'eca', 'ECA236G4830' => 'eca', 'ECA248G1505' => 'eca', 'EL10Ac3g06431' => 'bvu', 'EL10Ac5g12577' => 'bvu', 'EL10Ac6g13533' => 'bvu', 'EL10Ac7g16045' => 'bvu', 'Eucgr.A01281' => 'egr', 'Eucgr.B02326' => 'egr', 'Eucgr.H03532' => 'egr', 'Eucgr.K00553' => 'egr', 'Eucgr.K03116' => 'egr', 'FAN02G3963' => 'fan', 'FAN05G0438' => 'fan', 'FAN09G2434' => 'fan', 'FAN12G3984' => 'fan', 'FAN14G0798' => 'fan', 'FAN17G0652' => 'fan', 'FAN19G1988' => 'fan', 'FAN22G0632' => 'fan', 'FAN23G0387' => 'fan', 'FAN26G1323' => 'fan', 'FAN28G0666' => 'fan', 'FvH4_1g26080' => 'fve', 'FvH4_3g36780' => 'fve', 'FvH4_4g15270' => 'fve', 'FvH4_6g13490' => 'fve', 'Glyma.01G098700' => 'gma', 'Glyma.03G065900' => 'gma', 'Glyma.03G073754' => 'gma', 'Glyma.03G073758' => 'gma', 'Glyma.03G083200' => 'gma', 'Glyma.03G225500' => 'gma', 'Glyma.05G037766' => 'gma', 'Glyma.07G133500' => 'gma', 'Glyma.10G139400' => 'gma', 'Glyma.10G248900' => 'gma', 'Glyma.11G137800' => 'gma', 'Glyma.12G061300' => 'gma', 'Glyma.13G337900' => 'gma', 'Glyma.15G036600' => 'gma', 'Glyma.18G182800' => 'gma', 'Glyma.19G222500' => 'gma', 'Glyma.20G144800' => 'gma', 'Gohir.A01G222000' => 'ghi', 'Gohir.A03G044000' => 'ghi', 'Gohir.A03G044100' => 'ghi', 'Gohir.A04G083100' => 'ghi', 'Gohir.A07G127200' => 'ghi', 'Gohir.A07G132400' => 'ghi', 'Gohir.A08G000700' => 'ghi', 'Gohir.A11G327300' => 'ghi', 'Gohir.D01G211500' => 'ghi', 'Gohir.D03G123400' => 'ghi', 'Gohir.D03G123500' => 'ghi', 'Gohir.D04G121800' => 'ghi', 'Gohir.D07G131500' => 'ghi', 'Gohir.D07G136600' => 'ghi', 'Gohir.D08G011600' => 'ghi', 'Gohir.D11G346200' => 'ghi', 'Gorai.001G142800' => 'gra', 'Gorai.001G148700' => 'gra', 'Gorai.002G257300' => 'gra', 'Gorai.003G130000' => 'gra', 'Gorai.003G130100' => 'gra', 'Gorai.004G005300' => 'gra', 'Gorai.007G376500' => 'gra', 'Gorai.012G104700' => 'gra', 'GSVIVG01017946001' => 'vvi', 'GSVIVG01024928001' => 'vvi', 'GSVIVG01028227001' => 'vvi', 'GSVIVG01034151001' => 'vvi', 'HanXRQChr05g0135031' => 'han', 'HanXRQChr05g0135041' => 'han', 'HanXRQChr05g0140021' => 'han', 'HanXRQChr06g0178981' => 'han', 'HanXRQChr07g0188251' => 'han', 'HanXRQChr08g0235311' => 'han', 'HanXRQChr09g0271011' => 'han', 'HanXRQChr10g0293321' => 'han', 'HanXRQChr13g0388171' => 'han', 'Haze_00916' => 'cav', 'Haze_05063' => 'cav', 'Haze_20814' => 'cav', 'Haze_24128' => 'cav', 'Hma1.2p1_0745F.1_g212010' => 'hma', 'Hma1.2p1_0757F.1_g213260' => 'hma', 'Hma1.2p1_0936F.1_g238840' => 'hma', 'Hma1.2p1_1735F.1_g299890' => 'hma', 'Hma1.2p1_1861F.1_g305685' => 'hma', 'HPP92_003397' => 'vpl', 'HPP92_012597' => 'vpl', 'HPP92_015520' => 'vpl', 'HPP92_015539' => 'vpl', 'HPP92_020373' => 'vpl', 'Hund04938' => 'sun', 'Hund10677' => 'sun', 'Hund11033' => 'sun', 'Hund12155' => 'sun', 'Lalb_Chr01g0022551' => 'lal', 'Lalb_Chr03g0042341' => 'lal', 'Lalb_Chr07g0192931' => 'lal', 'Lalb_Chr12g0209551' => 'lal', 'Lalb_Chr19g0125251' => 'lal', 'Lalb_Chr19g0137891' => 'lal', 'Lalb_Chr21g0304641' => 'lal', 'Lalb_Chr21g0309881' => 'lal', 'Lj1A5T12' => 'lonja', 'Lj1C148G10' => 'lonja', 'Lj2A93T83' => 'lonja', 'Lj3A738G68' => 'lonja', 'Lj3C966T1' => 'lonja', 'Lj3g0018958' => 'lja', 'Lj3g0021831' => 'lja', 'Lj3g0025443' => 'lja', 'Lj4g0026809' => 'lja', 'Lj5g0012558' => 'lja', 'Lj5g0021586' => 'lja', 'Lsat_1_v5_gn_5_156840' => 'lsa', 'Lsat_1_v5_gn_8_73460' => 'lsa', 'Lsat_1_v5_gn_8_73481' => 'lsa', 'Lsat_1_v5_gn_9_31601' => 'lsa', 'Lsat_1_v5_gn_9_77320' => 'lsa', 'Manes.01G171300' => 'mes', 'Manes.01G171400' => 'mes', 'Manes.01G236100' => 'mes', 'Manes.02G130500' => 'mes', 'Manes.02G130600' => 'mes', 'Manes.03G180200' => 'mes', 'Manes.05G007000' => 'mes', 'Manes.08G084400' => 'mes', 'Manes.09G092600' => 'mes', 'Manes.15G027900' => 'mes', 'MBI04_g40948_MAGBIO' => 'mbi', 'MBI14_g12123_MAGBIO' => 'mbi', 'MBI18_g28915_MAGBIO' => 'mbi', 'MCO09G053' => 'mco', 'MCO11G782' => 'mco', 'MCO15G215' => 'mco', 'MD03G1088500' => 'mdo', 'MD03G1088600' => 'mdo', 'MD04G1130800' => 'mdo', 'MD09G1291700' => 'mdo', 'MD11G1097500' => 'mdo', 'MD11G1097600' => 'mdo', 'MD12G1143900' => 'mdo', 'MD13G1191400' => 'mdo', 'MD16G1191500' => 'mdo', 'Medtr1g085570' => 'mtr', 'Medtr1g104610' => 'mtr', 'Medtr2g097520' => 'mtr', 'Medtr4g021800' => 'mtr', 'Medtr4g021825' => 'mtr', 'Medtr4g064270' => 'mtr', 'Medtr4g064380' => 'mtr', 'Medtr7g062150' => 'mtr', 'MELO3C003138.2' => 'cme', 'MELO3C005187.2' => 'cme', 'MELO3C009252.2' => 'cme', 'MELO3C014481.2' => 'cme', 'MELO3C020616.2' => 'cme', 'MELO3C020617.2' => 'cme', 'MELO3C020618.2' => 'cme', 'Migut.G00328' => 'egut', 'Migut.J00320' => 'egut', 'Migut.L01000' => 'egut', 'Migut.L01953' => 'egut', 'MSTRG.10253' => 'ama', 'MSTRG.19077' => 'ama', 'MSTRG.26780' => 'ama', 'MSTRG.4023' => 'ama', 'MSTRG.5655' => 'ama', 'MSTRG.9992' => 'ama', 'Nitab4.5_0000043g0310' => 'nta', 'Nitab4.5_0000463g0080' => 'nta', 'Nitab4.5_0000705g0170' => 'nta', 'Nitab4.5_0001326g0060' => 'nta', 'Nitab4.5_0001628g0030' => 'nta', 'Nitab4.5_0002103g0110' => 'nta', 'Nitab4.5_0002946g0030' => 'nta', 'Nitab4.5_0004639g0030' => 'nta', 'Nn2g11149' => 'nnu', 'Nn2g13389' => 'nnu', 'Nn4g25326' => 'nnu', 'Nn4g26290' => 'nnu', 'Nn5g29865' => 'nnu', 'Oeu004163.1' => 'oeu', 'Oeu006901.1' => 'oeu', 'Oeu010096.1' => 'oeu', 'Oeu024340.1' => 'oeu', 'Oeu048369.1' => 'oeu', 'Os01g0973000' => 'osa', 'Os03g0273800' => 'osa', 'Os03g0701200' => 'osa', 'Os03g0834050' => 'osa', 'Os07g0634400' => 'osa', 'Peaxi162Scf00092g01414' => 'pax', 'Peaxi162Scf00165g00818' => 'pax', 'Peaxi162Scf00309g00516' => 'pax', 'Peaxi162Scf00774g00218' => 'pax', 'PGR004G1824' => 'pgr', 'PGR004G2606' => 'pgr', 'PGR031G2716' => 'pgr', 'PGR102G2460' => 'pgr', 'PGR142G2599' => 'pgr', 'PGSC0003DMG400000843' => 'stu', 'PGSC0003DMG400008829' => 'stu', 'PGSC0003DMG400030418' => 'stu', 'PGSC0003DMG400031834' => 'stu', 'PGSC0003DMG401028300' => 'stu', 'PGSC0003DMG402028300' => 'stu', 'Phvul.001G219300' => 'pvu', 'Phvul.007G056000' => 'pvu', 'Phvul.007G208000' => 'pvu', 'Phvul.008G119500' => 'pvu', 'Phvul.010G011200' => 'pvu', 'Phvul.010G014800' => 'pvu', 'Phvul.011G062900' => 'pvu', 'Phvul.L007043' => 'pvu', 'Potri.001G242300' => 'ptr', 'Potri.002G185300' => 'ptr', 'Potri.006G086900' => 'ptr', 'Potri.008G151700' => 'ptr', 'Potri.009G033500' => 'ptr', 'Potri.010G089300' => 'ptr', 'Potri.014G110800' => 'ptr', 'Pp3c27_8130' => 'ppa', 'Pp3c6_27410' => 'ppa', 'PRCOL_00001659' => 'pco', 'PRCOL_00001927' => 'pco', 'PRCOL_00003649' => 'pco', 'Prupe.1G011600' => 'ppe', 'Prupe.3G000800' => 'ppe', 'Prupe.3G001100' => 'ppe', 'Prupe.6G072700' => 'ppe', 'Prupe.6G072800' => 'ppe', 'Prupe.6G257300' => 'ppe', 'Prupe.8G033000' => 'ppe', 'Psat0s2633g0080' => 'psa', 'Psat0s3396g0080' => 'psa', 'Psat0s3396g0200' => 'psa', 'Psat3g139080' => 'psa', 'Psat5g285080' => 'psa', 'Psat6g157760' => 'psa', 'Psat6g208440' => 'psa', 'Psat7g215320' => 'psa', 'Psat7g215400' => 'psa', 'Psat7g235600' => 'psa', 'Psat7g235760' => 'psa', 'PSO063G4603' => 'pso', 'PSO210G0182' => 'pso', 'PSO210G0196' => 'pso', 'PSO339G0394' => 'pso', 'PSO339G4127' => 'pso', 'PSO513G0064' => 'pso', 'PSO761G0079' => 'pso', 'QL01p031003' => 'qlo', 'QL01p031078' => 'qlo', 'QL06p003004' => 'qlo', 'QL07p048731' => 'qlo', 'QL09p037427' => 'qlo', 'RcHm_v2.0_Chr3g0466361' => 'rch', 'RcHm_v2.0_Chr3g0485571' => 'rch', 'RcHm_v2.0_Chr4g0416551' => 'rch', 'RcHm_v2.0_Chr5g0065831' => 'rch', 'Rhsim01G0230500' => 'rsi', 'Rhsim05G0194000' => 'rsi', 'Rhsim08G0250400' => 'rsi', 'Sabra02G0131000' => 'sbr', 'Sabra06G0066300' => 'sbr', 'Sabra08G0115500' => 'sbr', 'Sabra09G0023900' => 'sbr', 'Sabra10G0054000' => 'sbr', 'Sabra14G0081500' => 'sbr', 'Sabra16G0147100' => 'sbr', 'SalBow2G2957' => 'sbo', 'SalBow4G3320' => 'sbo', 'SalBow8G1894' => 'sbo', 'Sc07g0007950' => 'sci', 'Sc12g0001360' => 'sci', 'Sc13g0004330' => 'sci', 'Sc20g0005010' => 'sci', 'Sed0000361' => 'sed', 'Sed0001706' => 'sed', 'Sed0002422' => 'sed', 'Sed0004029' => 'sed', 'Sed0004602' => 'sed', 'Sed0004943' => 'sed', 'Sed0008646' => 'sed', 'Sed0023313' => 'sed', 'Sed0024843' => 'sed', 'SEGI_00081' => 'sgi', 'SEGI_00947' => 'sgi', 'SEGI_04046' => 'sgi', 'SEGI_06880' => 'sgi', 'SEGI_09736' => 'sgi', 'SEGI_12741' => 'sgi', 'SEGI_14530' => 'sgi', 'SEGI_20705' => 'sgi', 'SEGI_26088' => 'sgi', 'SEGI_28323' => 'sgi', 'SEGI_33343' => 'sgi', 'SGA_v2.0_scaffold126G33775' => 'sas', 'SGA_v2.0_scaffold2G01337' => 'sas', 'SGA_v2.0_scaffold38G15006' => 'sas', 'SGA_v2.0_scaffold39G15264' => 'sas', 'SGA_v2.0_scaffold453G51880' => 'sas', 'SHI12696' => 'shi', 'SMO367G1096' => 'smo', 'Solyc01g068630.3' => 'sly', 'Solyc05g011880.3' => 'sly', 'Solyc06g076300.3' => 'sly', 'Solyc09g010940.4' => 'sly', 'Solyc09g075890.3' => 'sly', 'Sopen01g030560' => 'spe', 'Sopen05g006630' => 'spe', 'Sopen06g032720' => 'spe', 'Sopen09g005660' => 'spe', 'Sopen09g030690' => 'spe', 'Sp4g14540' => 'spa', 'Sp4g20030' => 'spa', 'Sp5g01320' => 'spa', 'Sp6g21170' => 'spa', 'Sp6g21180' => 'spa', 'Sp6g21190' => 'spa', 'Sp6g40220' => 'spa', 'TAR362G0122' => 'tar', 'TAR362G1338' => 'tar', 'TAR369G0590' => 'tar', 'TAR371G0824' => 'tar', 'TAR622G1429' => 'tar', 'TAR623G0734' => 'tar', 'TAR625G0441' => 'tar', 'TAR629G0976' => 'tar', 'TAR633G1195' => 'tar', 'TAR636G2660' => 'tar', 'THA.LOC104799440' => 'tha', 'THA.LOC104800966' => 'tha', 'THA.LOC104806559' => 'tha', 'THA.LOC104810765' => 'tha', 'THA.LOC104816266' => 'tha', 'THA.LOC104817419' => 'tha', 'THA.LOC104827021' => 'tha', 'Thecc.01G327400' => 'tca', 'Thecc.04G229200' => 'tca', 'Thecc.05G037400' => 'tca', 'Thecc.09G318600' => 'tca', 'Thecc.09G318700' => 'tca', 'Thhalv10006238m.g' => 'esa', 'Thhalv10014321m.g' => 'esa', 'Thhalv10014335m.g' => 'esa', 'Thhalv10015826m.g' => 'esa', 'Thhalv10017107m.g' => 'esa', 'Thhalv10017180m.g' => 'esa', 'Thhalv10029339m.g' => 'esa', 'TPR.G1699' => 'tpr', 'TPR.G23609' => 'tpr', 'TPR.G3081' => 'tpr', 'TPR.G40397' => 'tpr', 'TPR.G5522' => 'tpr', 'TPR.G5618' => 'tpr', 'TPR.G5626' => 'tpr', 'TWI09G1632' => 'twi', 'TWI23G1230' => 'twi', 'TWI53G1064' => 'twi', 'TWI59G0751' => 'twi', 'TWI74G0947' => 'twi', 'TWI77G0337' => 'twi', 'TWI79G1254' => 'twi', 'unitig_0.g2341' => 'ugi', 'unitig_26.g10006' => 'ugi', 'unitig_26.g10008' => 'ugi', 'unitig_26.g9192' => 'ugi', 'vmacro14547' => 'vma', 'vmacro15333' => 'vma', 'vmacro18743' => 'vma', 'vmacro20166' => 'vma', 'VMungo0331G0523' => 'vmu', 'VMungo0331G1202' => 'vmu', 'VMungo0720G1228' => 'vmu', 'VMungo0720G1514' => 'vmu', 'VMungo1080G0169' => 'vmu', 'VMungo1127G1475' => 'vmu', 'VMungo1383G1208' => 'vmu', 'VMungo1383G1698' => 'vmu', 'Zm00001eb012270' => 'zma', 'Zm00001eb054100' => 'zma', 'Zm00001eb063350' => 'zma', 'Zm00001eb328560' => 'zma', 'Zm00001eb342820' => 'zma', 'Zm00001eb362210' => 'zma', 'Zm00001eb397730' => 'zma', 'Zm00001eb399750' => 'zma' ), 'gf_id' => 'HOM05D000959', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000959' ), 'data_identifier' => 'HOM05D000959', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000959', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '622', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p07100' => 'bna', 'A03p11720' => 'bna', 'A05p08300' => 'bna', 'A05p13380' => 'bna', 'A09p54130' => 'bna', 'A10p16690' => 'bna', 'A10p16700' => 'bna', 'A10p33390' => 'bna', 'Aa31LG10G16020' => 'aar', 'Aa31LG1G11810' => 'aar', 'Aa31LG1G11830' => 'aar', 'Aa31LG1G22510' => 'aar', 'Aa31LG5G4890' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5793' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2310' => 'aag', 'Actinidia08499' => 'ach', 'Actinidia11262' => 'ach', 'Actinidia23926' => 'ach', 'Actinidia34420' => 'ach', 'Actinidia36970' => 'ach', 'Ah.02g111220' => 'amhyb', 'Ah.15g097750' => 'amhyb', 'AL4G27500' => 'aly', 'AL6G11470' => 'aly', 'AL8G35950' => 'aly', 'AL8G35960' => 'aly', 'AL8G35970' => 'aly', 'Aqoxy1G00912' => 'aox', 'Aqoxy2G02253' => 'aox', 'Aqoxy2G02411' => 'aox', 'Aqoxy5G00485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BZ66YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K8ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM4FUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6BF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HFV7XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25JBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0YNNV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MAKK6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P70IT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP2Z6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V61LZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YWP64R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3S9AI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7PGHH' => 'arhy', 'AT2G32150' => 'ath', 'AT3G62040' => 'ath', 'AT5G02230' => 'ath', 'AT5G59480' => 'ath', 'AT5G59490' => 'ath', 'ATR0332G060' => 'atr', 'ATR0559G190' => 'atr', 'ATR0693G294' => 'atr', 'Atru.chr3.3975' => 'acertr', 'Atru.chr3.3976' => 'acertr', 'Atru.chr3.3977' => 'acertr', 'Atru.chr4.2498' => 'acertr', 'Atru.chr5.838' => 'acertr', 'Atru.chr8.1990' => 'acertr', 'Atru.chr8.1991' => 'acertr', 'Atru.chr8.1992' => 'acertr', 'AUR62001759' => 'cqu', 'AUR62009545' => 'cqu', 'AUR62010474' => 'cqu', 'AUR62025820' => 'cqu', 'AUR62030422' => 'cqu', 'AUR62033605' => 'cqu', 'AUR62038615' => 'cqu', 'AUR62041347' => 'cqu', 'BcaB01g04574' => 'bca', 'BcaB02g09263' => 'bca', 'BcaB02g10453' => 'bca', 'BcaB05g22513' => 'bca', 'BcaB08g36253' => 'bca', 'BcaB08g36254' => 'bca', 'BcaC01g06519' => 'bca', 'BcaC02g11889' => 'bca', 'BcaC03g14010' => 'bca', 'BcaC03g18439' => 'bca', 'BcaC04g19765' => 'bca', 'BcaC09g48432' => 'bca', 'BcaNung07302' => 'bca', 'BolC2t06040H' => 'bol', 'BolC2t07346H' => 'bol', 'BolC3t13817H' => 'bol', 'BolC4t22625H' => 'bol', 'BolC4t23297H' => 'bol', 'BolC8t51278H' => 'bol', 'BolC9t58050H' => 'bol', 'BolC9t58051H' => 'bol', 'BolC9t60163H' => 'bol', 'BraA02t04712Z' => 'bra', 'BraA02t05791Z' => 'bra', 'BraA03t10483Z' => 'bra', 'BraA05t19795Z' => 'bra', 'BraA05t20276Z' => 'bra', 'BraA09t40827Z' => 'bra', 'BraA10t43750Z' => 'bra', 'BraA10t43751Z' => 'bra', 'BraA10t45370Z' => 'bra', 'C02p00400' => 'bna', 'C02p12460' => 'bna', 'C03p13680' => 'bna', 'C04p10270' => 'bna', 'C04p17500' => 'bna', 'C08p37010' => 'bna', 'C09p51880' => 'bna', 'C09p51890' => 'bna', 'C09p74300' => 'bna', 'CAN.G179.26' => 'can', 'CAN.G3384.1' => 'can', 'CAN.G394.68' => 'can', 'CAN.G907.13' => 'can', 'CANSAT11G0012' => 'cansat', 'CANSAT25G1586' => 'cansat', 'CANSAT35G0735' => 'cansat', 'CANSAT54G0556' => 'cansat', 'CANSAT64G0356' => 'cansat', 'CANSAT78G2042' => 'cansat', 'CARHR125920' => 'chi', 'CARHR131910' => 'chi', 'CARHR172390' => 'chi', 'CARHR211140' => 'chi', 'CARHR285850' => 'chi', 'CARHR285860' => 'chi', 'Carub.0004s1347' => 'cru', 'Carub.0004s1960' => 'cru', 'Carub.0005s2880' => 'cru', 'Carub.0006s0107' => 'cru', 'Carub.0008s2015' => 'cru', 'Carub.0008s2016' => 'cru', 'Carub.0008s2017' => 'cru', 'Ca_01315_v3' => 'car', 'Ca_05063_v3' => 'car', 'Ca_10231_v3' => 'car', 'Ca_10913_v3' => 'car', 'Ca_19156_v3' => 'car', 'Ca_23644_v3' => 'car', 'Ca_26735_v3' => 'car', 'Cc01_g13130' => 'ccan', 'Cc02_g21690' => 'ccan', 'Cc03_g03600' => 'ccan', 'Cc06_g02510' => 'ccan', 'CDE02G1265' => 'cde', 'CDE05G0415' => 'cde', 'CDE08G1082' => 'cde', 'Cfa005780' => 'cfa', 'Cfa011522' => 'cfa', 'Cfa011523' => 'cfa', 'Cfa015627' => 'cfa', 'Cfa017359' => 'cfa', 'Ciclev10005687m.g' => 'ccl', 'Ciclev10012173m.g' => 'ccl', 'Ciclev10021621m.g' => 'ccl', 'Ciclev10028968m.g' => 'ccl', 'Ciclev10029907m.g' => 'ccl', 'CiPaw.01G164800' => 'cil', 'CiPaw.07G083700' => 'cil', 'CiPaw.07G127000' => 'cil', 'CiPaw.07G136900' => 'cil', 'CiPaw.08G081700' => 'cil', 'CiPaw.09G194600' => 'cil', 'CiPaw.10G146500' => 'cil', 'CiPaw.13G091500' => 'cil', 'CiPaw.13G091600' => 'cil', 'ClCG00G003390' => 'cla', 'ClCG01G007220' => 'cla', 'ClCG03G001370' => 'cla', 'ClCG04G008100' => 'cla', 'ClCG06G006110' => 'cla', 'ClCG06G006130' => 'cla', 'ClCG10G021210' => 'cla', 'COL.COLO4_07648' => 'col', 'COL.COLO4_07650' => 'col', 'COL.COLO4_07651' => 'col', 'COL.COLO4_14780' => 'col', 'COL.COLO4_18546' => 'col', 'COL.COLO4_18547' => 'col', 'COL.COLO4_23103' => 'col', 'COL.COLO4_30419' => 'col', 'COL.COLO4_34232' => 'col', 'Cpa.g.sc169.20' => 'cpa', 'Cpa.g.sc57.45' => 'cpa', 'Cpa.g.sc58.124' => 'cpa', 'Cpa.g.sc58.125' => 'cpa', 'Cpa.g.sc81.118' => 'cpa', 'Cpa.g.sc81.119' => 'cpa', 'Cre12.g524700' => 'cre', 'CsaV3_1G034430' => 'csa', 'CsaV3_1G034440' => 'csa', 'CsaV3_1G034450' => 'csa', 'CsaV3_3G034830' => 'csa', 'CsaV3_4G025090' => 'csa', 'CsaV3_5G018660' => 'csa', 'CsaV3_6G038160' => 'csa', 'CSS0003447' => 'camsi', 'CSS0017840' => 'camsi', 'CSS0019260' => 'camsi', 'CSS0040375' => 'camsi', 'CSS0042533' => 'camsi', 'DCAR_005960' => 'dca', 'DCAR_012104' => 'dca', 'DCAR_012105' => 'dca', 'DCAR_012293' => 'dca', 'DCAR_015632' => 'dca', 'DCAR_024602' => 'dca', 'DCAR_028752' => 'dca', 'Dinv06261' => 'din', 'Dinv13982' => 'din', 'Dinv17029' => 'din', 'Dinv18463' => 'din', 'Dinv33181' => 'din', 'Dinv35585' => 'din', 'Dinv37161' => 'din', 'Dinv42977' => 'din', 'Dinv43122' => 'din', 'Dinv44517' => 'din', 'Duzib093G0256' => 'dzi', 'Duzib106G1254' => 'dzi', 'Duzib128G1789' => 'dzi', 'Duzib133G0633' => 'dzi', 'Duzib138G0510' => 'dzi', 'Duzib150G1084' => 'dzi', 'Duzib168G0488' => 'dzi', 'Duzib168G1523' => 'dzi', 'Duzib170G0133' => 'dzi', 'ECA234G1433' => 'eca', 'ECA236G1432' => 'eca', 'ECA236G2256' => 'eca', 'ECA236G2365' => 'eca', 'ECA236G4830' => 'eca', 'ECA248G1505' => 'eca', 'EL10Ac3g06431' => 'bvu', 'EL10Ac5g12577' => 'bvu', 'EL10Ac6g13533' => 'bvu', 'EL10Ac7g16045' => 'bvu', 'Eucgr.A01281' => 'egr', 'Eucgr.B02326' => 'egr', 'Eucgr.H03532' => 'egr', 'Eucgr.K00553' => 'egr', 'Eucgr.K03116' => 'egr', 'FAN02G3963' => 'fan', 'FAN05G0438' => 'fan', 'FAN09G2434' => 'fan', 'FAN12G3984' => 'fan', 'FAN14G0798' => 'fan', 'FAN17G0652' => 'fan', 'FAN19G1988' => 'fan', 'FAN22G0632' => 'fan', 'FAN23G0387' => 'fan', 'FAN26G1323' => 'fan', 'FAN28G0666' => 'fan', 'FvH4_1g26080' => 'fve', 'FvH4_3g36780' => 'fve', 'FvH4_4g15270' => 'fve', 'FvH4_6g13490' => 'fve', 'Glyma.01G098700' => 'gma', 'Glyma.03G065900' => 'gma', 'Glyma.03G073754' => 'gma', 'Glyma.03G073758' => 'gma', 'Glyma.03G083200' => 'gma', 'Glyma.03G225500' => 'gma', 'Glyma.05G037766' => 'gma', 'Glyma.07G133500' => 'gma', 'Glyma.10G139400' => 'gma', 'Glyma.10G248900' => 'gma', 'Glyma.11G137800' => 'gma', 'Glyma.12G061300' => 'gma', 'Glyma.13G337900' => 'gma', 'Glyma.15G036600' => 'gma', 'Glyma.18G182800' => 'gma', 'Glyma.19G222500' => 'gma', 'Glyma.20G144800' => 'gma', 'Gohir.A01G222000' => 'ghi', 'Gohir.A03G044000' => 'ghi', 'Gohir.A03G044100' => 'ghi', 'Gohir.A04G083100' => 'ghi', 'Gohir.A07G127200' => 'ghi', 'Gohir.A07G132400' => 'ghi', 'Gohir.A08G000700' => 'ghi', 'Gohir.A11G327300' => 'ghi', 'Gohir.D01G211500' => 'ghi', 'Gohir.D03G123400' => 'ghi', 'Gohir.D03G123500' => 'ghi', 'Gohir.D04G121800' => 'ghi', 'Gohir.D07G131500' => 'ghi', 'Gohir.D07G136600' => 'ghi', 'Gohir.D08G011600' => 'ghi', 'Gohir.D11G346200' => 'ghi', 'Gorai.001G142800' => 'gra', 'Gorai.001G148700' => 'gra', 'Gorai.002G257300' => 'gra', 'Gorai.003G130000' => 'gra', 'Gorai.003G130100' => 'gra', 'Gorai.004G005300' => 'gra', 'Gorai.007G376500' => 'gra', 'Gorai.012G104700' => 'gra', 'GSVIVG01017946001' => 'vvi', 'GSVIVG01024928001' => 'vvi', 'GSVIVG01028227001' => 'vvi', 'GSVIVG01034151001' => 'vvi', 'HanXRQChr05g0135031' => 'han', 'HanXRQChr05g0135041' => 'han', 'HanXRQChr05g0140021' => 'han', 'HanXRQChr06g0178981' => 'han', 'HanXRQChr07g0188251' => 'han', 'HanXRQChr08g0235311' => 'han', 'HanXRQChr09g0271011' => 'han', 'HanXRQChr10g0293321' => 'han', 'HanXRQChr13g0388171' => 'han', 'Haze_00916' => 'cav', 'Haze_05063' => 'cav', 'Haze_20814' => 'cav', 'Haze_24128' => 'cav', 'Hma1.2p1_0745F.1_g212010' => 'hma', 'Hma1.2p1_0757F.1_g213260' => 'hma', 'Hma1.2p1_0936F.1_g238840' => 'hma', 'Hma1.2p1_1735F.1_g299890' => 'hma', 'Hma1.2p1_1861F.1_g305685' => 'hma', 'HPP92_003397' => 'vpl', 'HPP92_012597' => 'vpl', 'HPP92_015520' => 'vpl', 'HPP92_015539' => 'vpl', 'HPP92_020373' => 'vpl', 'Hund04938' => 'sun', 'Hund10677' => 'sun', 'Hund11033' => 'sun', 'Hund12155' => 'sun', 'Lalb_Chr01g0022551' => 'lal', 'Lalb_Chr03g0042341' => 'lal', 'Lalb_Chr07g0192931' => 'lal', 'Lalb_Chr12g0209551' => 'lal', 'Lalb_Chr19g0125251' => 'lal', 'Lalb_Chr19g0137891' => 'lal', 'Lalb_Chr21g0304641' => 'lal', 'Lalb_Chr21g0309881' => 'lal', 'Lj1A5T12' => 'lonja', 'Lj1C148G10' => 'lonja', 'Lj2A93T83' => 'lonja', 'Lj3A738G68' => 'lonja', 'Lj3C966T1' => 'lonja', 'Lj3g0018958' => 'lja', 'Lj3g0021831' => 'lja', 'Lj3g0025443' => 'lja', 'Lj4g0026809' => 'lja', 'Lj5g0012558' => 'lja', 'Lj5g0021586' => 'lja', 'Lsat_1_v5_gn_5_156840' => 'lsa', 'Lsat_1_v5_gn_8_73460' => 'lsa', 'Lsat_1_v5_gn_8_73481' => 'lsa', 'Lsat_1_v5_gn_9_31601' => 'lsa', 'Lsat_1_v5_gn_9_77320' => 'lsa', 'Manes.01G171300' => 'mes', 'Manes.01G171400' => 'mes', 'Manes.01G236100' => 'mes', 'Manes.02G130500' => 'mes', 'Manes.02G130600' => 'mes', 'Manes.03G180200' => 'mes', 'Manes.05G007000' => 'mes', 'Manes.08G084400' => 'mes', 'Manes.09G092600' => 'mes', 'Manes.15G027900' => 'mes', 'MBI04_g40948_MAGBIO' => 'mbi', 'MBI14_g12123_MAGBIO' => 'mbi', 'MBI18_g28915_MAGBIO' => 'mbi', 'MCO09G053' => 'mco', 'MCO11G782' => 'mco', 'MCO15G215' => 'mco', 'MD03G1088500' => 'mdo', 'MD03G1088600' => 'mdo', 'MD04G1130800' => 'mdo', 'MD09G1291700' => 'mdo', 'MD11G1097500' => 'mdo', 'MD11G1097600' => 'mdo', 'MD12G1143900' => 'mdo', 'MD13G1191400' => 'mdo', 'MD16G1191500' => 'mdo', 'Medtr1g085570' => 'mtr', 'Medtr1g104610' => 'mtr', 'Medtr2g097520' => 'mtr', 'Medtr4g021800' => 'mtr', 'Medtr4g021825' => 'mtr', 'Medtr4g064270' => 'mtr', 'Medtr4g064380' => 'mtr', 'Medtr7g062150' => 'mtr', 'MELO3C003138.2' => 'cme', 'MELO3C005187.2' => 'cme', 'MELO3C009252.2' => 'cme', 'MELO3C014481.2' => 'cme', 'MELO3C020616.2' => 'cme', 'MELO3C020617.2' => 'cme', 'MELO3C020618.2' => 'cme', 'Migut.G00328' => 'egut', 'Migut.J00320' => 'egut', 'Migut.L01000' => 'egut', 'Migut.L01953' => 'egut', 'MSTRG.10253' => 'ama', 'MSTRG.19077' => 'ama', 'MSTRG.26780' => 'ama', 'MSTRG.4023' => 'ama', 'MSTRG.5655' => 'ama', 'MSTRG.9992' => 'ama', 'Nitab4.5_0000043g0310' => 'nta', 'Nitab4.5_0000463g0080' => 'nta', 'Nitab4.5_0000705g0170' => 'nta', 'Nitab4.5_0001326g0060' => 'nta', 'Nitab4.5_0001628g0030' => 'nta', 'Nitab4.5_0002103g0110' => 'nta', 'Nitab4.5_0002946g0030' => 'nta', 'Nitab4.5_0004639g0030' => 'nta', 'Nn2g11149' => 'nnu', 'Nn2g13389' => 'nnu', 'Nn4g25326' => 'nnu', 'Nn4g26290' => 'nnu', 'Nn5g29865' => 'nnu', 'Oeu004163.1' => 'oeu', 'Oeu006901.1' => 'oeu', 'Oeu010096.1' => 'oeu', 'Oeu024340.1' => 'oeu', 'Oeu048369.1' => 'oeu', 'Os01g0973000' => 'osa', 'Os03g0273800' => 'osa', 'Os03g0701200' => 'osa', 'Os03g0834050' => 'osa', 'Os07g0634400' => 'osa', 'Peaxi162Scf00092g01414' => 'pax', 'Peaxi162Scf00165g00818' => 'pax', 'Peaxi162Scf00309g00516' => 'pax', 'Peaxi162Scf00774g00218' => 'pax', 'PGR004G1824' => 'pgr', 'PGR004G2606' => 'pgr', 'PGR031G2716' => 'pgr', 'PGR102G2460' => 'pgr', 'PGR142G2599' => 'pgr', 'PGSC0003DMG400000843' => 'stu', 'PGSC0003DMG400008829' => 'stu', 'PGSC0003DMG400030418' => 'stu', 'PGSC0003DMG400031834' => 'stu', 'PGSC0003DMG401028300' => 'stu', 'PGSC0003DMG402028300' => 'stu', 'Phvul.001G219300' => 'pvu', 'Phvul.007G056000' => 'pvu', 'Phvul.007G208000' => 'pvu', 'Phvul.008G119500' => 'pvu', 'Phvul.010G011200' => 'pvu', 'Phvul.010G014800' => 'pvu', 'Phvul.011G062900' => 'pvu', 'Phvul.L007043' => 'pvu', 'Potri.001G242300' => 'ptr', 'Potri.002G185300' => 'ptr', 'Potri.006G086900' => 'ptr', 'Potri.008G151700' => 'ptr', 'Potri.009G033500' => 'ptr', 'Potri.010G089300' => 'ptr', 'Potri.014G110800' => 'ptr', 'Pp3c27_8130' => 'ppa', 'Pp3c6_27410' => 'ppa', 'PRCOL_00001659' => 'pco', 'PRCOL_00001927' => 'pco', 'PRCOL_00003649' => 'pco', 'Prupe.1G011600' => 'ppe', 'Prupe.3G000800' => 'ppe', 'Prupe.3G001100' => 'ppe', 'Prupe.6G072700' => 'ppe', 'Prupe.6G072800' => 'ppe', 'Prupe.6G257300' => 'ppe', 'Prupe.8G033000' => 'ppe', 'Psat0s2633g0080' => 'psa', 'Psat0s3396g0080' => 'psa', 'Psat0s3396g0200' => 'psa', 'Psat3g139080' => 'psa', 'Psat5g285080' => 'psa', 'Psat6g157760' => 'psa', 'Psat6g208440' => 'psa', 'Psat7g215320' => 'psa', 'Psat7g215400' => 'psa', 'Psat7g235600' => 'psa', 'Psat7g235760' => 'psa', 'PSO063G4603' => 'pso', 'PSO210G0182' => 'pso', 'PSO210G0196' => 'pso', 'PSO339G0394' => 'pso', 'PSO339G4127' => 'pso', 'PSO513G0064' => 'pso', 'PSO761G0079' => 'pso', 'QL01p031003' => 'qlo', 'QL01p031078' => 'qlo', 'QL06p003004' => 'qlo', 'QL07p048731' => 'qlo', 'QL09p037427' => 'qlo', 'RcHm_v2.0_Chr3g0466361' => 'rch', 'RcHm_v2.0_Chr3g0485571' => 'rch', 'RcHm_v2.0_Chr4g0416551' => 'rch', 'RcHm_v2.0_Chr5g0065831' => 'rch', 'Rhsim01G0230500' => 'rsi', 'Rhsim05G0194000' => 'rsi', 'Rhsim08G0250400' => 'rsi', 'Sabra02G0131000' => 'sbr', 'Sabra06G0066300' => 'sbr', 'Sabra08G0115500' => 'sbr', 'Sabra09G0023900' => 'sbr', 'Sabra10G0054000' => 'sbr', 'Sabra14G0081500' => 'sbr', 'Sabra16G0147100' => 'sbr', 'SalBow2G2957' => 'sbo', 'SalBow4G3320' => 'sbo', 'SalBow8G1894' => 'sbo', 'Sc07g0007950' => 'sci', 'Sc12g0001360' => 'sci', 'Sc13g0004330' => 'sci', 'Sc20g0005010' => 'sci', 'Sed0000361' => 'sed', 'Sed0001706' => 'sed', 'Sed0002422' => 'sed', 'Sed0004029' => 'sed', 'Sed0004602' => 'sed', 'Sed0004943' => 'sed', 'Sed0008646' => 'sed', 'Sed0023313' => 'sed', 'Sed0024843' => 'sed', 'SEGI_00081' => 'sgi', 'SEGI_00947' => 'sgi', 'SEGI_04046' => 'sgi', 'SEGI_06880' => 'sgi', 'SEGI_09736' => 'sgi', 'SEGI_12741' => 'sgi', 'SEGI_14530' => 'sgi', 'SEGI_20705' => 'sgi', 'SEGI_26088' => 'sgi', 'SEGI_28323' => 'sgi', 'SEGI_33343' => 'sgi', 'SGA_v2.0_scaffold126G33775' => 'sas', 'SGA_v2.0_scaffold2G01337' => 'sas', 'SGA_v2.0_scaffold38G15006' => 'sas', 'SGA_v2.0_scaffold39G15264' => 'sas', 'SGA_v2.0_scaffold453G51880' => 'sas', 'SHI12696' => 'shi', 'SMO367G1096' => 'smo', 'Solyc01g068630.3' => 'sly', 'Solyc05g011880.3' => 'sly', 'Solyc06g076300.3' => 'sly', 'Solyc09g010940.4' => 'sly', 'Solyc09g075890.3' => 'sly', 'Sopen01g030560' => 'spe', 'Sopen05g006630' => 'spe', 'Sopen06g032720' => 'spe', 'Sopen09g005660' => 'spe', 'Sopen09g030690' => 'spe', 'Sp4g14540' => 'spa', 'Sp4g20030' => 'spa', 'Sp5g01320' => 'spa', 'Sp6g21170' => 'spa', 'Sp6g21180' => 'spa', 'Sp6g21190' => 'spa', 'Sp6g40220' => 'spa', 'TAR362G0122' => 'tar', 'TAR362G1338' => 'tar', 'TAR369G0590' => 'tar', 'TAR371G0824' => 'tar', 'TAR622G1429' => 'tar', 'TAR623G0734' => 'tar', 'TAR625G0441' => 'tar', 'TAR629G0976' => 'tar', 'TAR633G1195' => 'tar', 'TAR636G2660' => 'tar', 'THA.LOC104799440' => 'tha', 'THA.LOC104800966' => 'tha', 'THA.LOC104806559' => 'tha', 'THA.LOC104810765' => 'tha', 'THA.LOC104816266' => 'tha', 'THA.LOC104817419' => 'tha', 'THA.LOC104827021' => 'tha', 'Thecc.01G327400' => 'tca', 'Thecc.04G229200' => 'tca', 'Thecc.05G037400' => 'tca', 'Thecc.09G318600' => 'tca', 'Thecc.09G318700' => 'tca', 'Thhalv10006238m.g' => 'esa', 'Thhalv10014321m.g' => 'esa', 'Thhalv10014335m.g' => 'esa', 'Thhalv10015826m.g' => 'esa', 'Thhalv10017107m.g' => 'esa', 'Thhalv10017180m.g' => 'esa', 'Thhalv10029339m.g' => 'esa', 'TPR.G1699' => 'tpr', 'TPR.G23609' => 'tpr', 'TPR.G3081' => 'tpr', 'TPR.G40397' => 'tpr', 'TPR.G5522' => 'tpr', 'TPR.G5618' => 'tpr', 'TPR.G5626' => 'tpr', 'TWI09G1632' => 'twi', 'TWI23G1230' => 'twi', 'TWI53G1064' => 'twi', 'TWI59G0751' => 'twi', 'TWI74G0947' => 'twi', 'TWI77G0337' => 'twi', 'TWI79G1254' => 'twi', 'unitig_0.g2341' => 'ugi', 'unitig_26.g10006' => 'ugi', 'unitig_26.g10008' => 'ugi', 'unitig_26.g9192' => 'ugi', 'vmacro14547' => 'vma', 'vmacro15333' => 'vma', 'vmacro18743' => 'vma', 'vmacro20166' => 'vma', 'VMungo0331G0523' => 'vmu', 'VMungo0331G1202' => 'vmu', 'VMungo0720G1228' => 'vmu', 'VMungo0720G1514' => 'vmu', 'VMungo1080G0169' => 'vmu', 'VMungo1127G1475' => 'vmu', 'VMungo1383G1208' => 'vmu', 'VMungo1383G1698' => 'vmu', 'Zm00001eb012270' => 'zma', 'Zm00001eb054100' => 'zma', 'Zm00001eb063350' => 'zma', 'Zm00001eb328560' => 'zma', 'Zm00001eb342820' => 'zma', 'Zm00001eb362210' => 'zma', 'Zm00001eb397730' => 'zma', 'Zm00001eb399750' => 'zma' ) $gf_id = 'HOM05D000959' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000959' ) $data_identifier = 'HOM05D000959' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 5, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 5, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 10, 'mbi' => (int) 3, 'mco' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 2, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 3, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 11, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399750' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":"";
$selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":"";
$num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000959', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '622', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p07100' => 'bna', 'A03p11720' => 'bna', 'A05p08300' => 'bna', 'A05p13380' => 'bna', 'A09p54130' => 'bna', 'A10p16690' => 'bna', 'A10p16700' => 'bna', 'A10p33390' => 'bna', 'Aa31LG10G16020' => 'aar', 'Aa31LG1G11810' => 'aar', 'Aa31LG1G11830' => 'aar', 'Aa31LG1G22510' => 'aar', 'Aa31LG5G4890' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5793' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2310' => 'aag', 'Actinidia08499' => 'ach', 'Actinidia11262' => 'ach', 'Actinidia23926' => 'ach', 'Actinidia34420' => 'ach', 'Actinidia36970' => 'ach', 'Ah.02g111220' => 'amhyb', 'Ah.15g097750' => 'amhyb', 'AL4G27500' => 'aly', 'AL6G11470' => 'aly', 'AL8G35950' => 'aly', 'AL8G35960' => 'aly', 'AL8G35970' => 'aly', 'Aqoxy1G00912' => 'aox', 'Aqoxy2G02253' => 'aox', 'Aqoxy2G02411' => 'aox', 'Aqoxy5G00485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BZ66YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K8ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM4FUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6BF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HFV7XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25JBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0YNNV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MAKK6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P70IT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP2Z6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V61LZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YWP64R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3S9AI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7PGHH' => 'arhy', 'AT2G32150' => 'ath', 'AT3G62040' => 'ath', 'AT5G02230' => 'ath', 'AT5G59480' => 'ath', 'AT5G59490' => 'ath', 'ATR0332G060' => 'atr', 'ATR0559G190' => 'atr', 'ATR0693G294' => 'atr', 'Atru.chr3.3975' => 'acertr', 'Atru.chr3.3976' => 'acertr', 'Atru.chr3.3977' => 'acertr', 'Atru.chr4.2498' => 'acertr', 'Atru.chr5.838' => 'acertr', 'Atru.chr8.1990' => 'acertr', 'Atru.chr8.1991' => 'acertr', 'Atru.chr8.1992' => 'acertr', 'AUR62001759' => 'cqu', 'AUR62009545' => 'cqu', 'AUR62010474' => 'cqu', 'AUR62025820' => 'cqu', 'AUR62030422' => 'cqu', 'AUR62033605' => 'cqu', 'AUR62038615' => 'cqu', 'AUR62041347' => 'cqu', 'BcaB01g04574' => 'bca', 'BcaB02g09263' => 'bca', 'BcaB02g10453' => 'bca', 'BcaB05g22513' => 'bca', 'BcaB08g36253' => 'bca', 'BcaB08g36254' => 'bca', 'BcaC01g06519' => 'bca', 'BcaC02g11889' => 'bca', 'BcaC03g14010' => 'bca', 'BcaC03g18439' => 'bca', 'BcaC04g19765' => 'bca', 'BcaC09g48432' => 'bca', 'BcaNung07302' => 'bca', 'BolC2t06040H' => 'bol', 'BolC2t07346H' => 'bol', 'BolC3t13817H' => 'bol', 'BolC4t22625H' => 'bol', 'BolC4t23297H' => 'bol', 'BolC8t51278H' => 'bol', 'BolC9t58050H' => 'bol', 'BolC9t58051H' => 'bol', 'BolC9t60163H' => 'bol', 'BraA02t04712Z' => 'bra', 'BraA02t05791Z' => 'bra', 'BraA03t10483Z' => 'bra', 'BraA05t19795Z' => 'bra', 'BraA05t20276Z' => 'bra', 'BraA09t40827Z' => 'bra', 'BraA10t43750Z' => 'bra', 'BraA10t43751Z' => 'bra', 'BraA10t45370Z' => 'bra', 'C02p00400' => 'bna', 'C02p12460' => 'bna', 'C03p13680' => 'bna', 'C04p10270' => 'bna', 'C04p17500' => 'bna', 'C08p37010' => 'bna', 'C09p51880' => 'bna', 'C09p51890' => 'bna', 'C09p74300' => 'bna', 'CAN.G179.26' => 'can', 'CAN.G3384.1' => 'can', 'CAN.G394.68' => 'can', 'CAN.G907.13' => 'can', 'CANSAT11G0012' => 'cansat', 'CANSAT25G1586' => 'cansat', 'CANSAT35G0735' => 'cansat', 'CANSAT54G0556' => 'cansat', 'CANSAT64G0356' => 'cansat', 'CANSAT78G2042' => 'cansat', 'CARHR125920' => 'chi', 'CARHR131910' => 'chi', 'CARHR172390' => 'chi', 'CARHR211140' => 'chi', 'CARHR285850' => 'chi', 'CARHR285860' => 'chi', 'Carub.0004s1347' => 'cru', 'Carub.0004s1960' => 'cru', 'Carub.0005s2880' => 'cru', 'Carub.0006s0107' => 'cru', 'Carub.0008s2015' => 'cru', 'Carub.0008s2016' => 'cru', 'Carub.0008s2017' => 'cru', 'Ca_01315_v3' => 'car', 'Ca_05063_v3' => 'car', 'Ca_10231_v3' => 'car', 'Ca_10913_v3' => 'car', 'Ca_19156_v3' => 'car', 'Ca_23644_v3' => 'car', 'Ca_26735_v3' => 'car', 'Cc01_g13130' => 'ccan', 'Cc02_g21690' => 'ccan', 'Cc03_g03600' => 'ccan', 'Cc06_g02510' => 'ccan', 'CDE02G1265' => 'cde', 'CDE05G0415' => 'cde', 'CDE08G1082' => 'cde', 'Cfa005780' => 'cfa', 'Cfa011522' => 'cfa', 'Cfa011523' => 'cfa', 'Cfa015627' => 'cfa', 'Cfa017359' => 'cfa', 'Ciclev10005687m.g' => 'ccl', 'Ciclev10012173m.g' => 'ccl', 'Ciclev10021621m.g' => 'ccl', 'Ciclev10028968m.g' => 'ccl', 'Ciclev10029907m.g' => 'ccl', 'CiPaw.01G164800' => 'cil', 'CiPaw.07G083700' => 'cil', 'CiPaw.07G127000' => 'cil', 'CiPaw.07G136900' => 'cil', 'CiPaw.08G081700' => 'cil', 'CiPaw.09G194600' => 'cil', 'CiPaw.10G146500' => 'cil', 'CiPaw.13G091500' => 'cil', 'CiPaw.13G091600' => 'cil', 'ClCG00G003390' => 'cla', 'ClCG01G007220' => 'cla', 'ClCG03G001370' => 'cla', 'ClCG04G008100' => 'cla', 'ClCG06G006110' => 'cla', 'ClCG06G006130' => 'cla', 'ClCG10G021210' => 'cla', 'COL.COLO4_07648' => 'col', 'COL.COLO4_07650' => 'col', 'COL.COLO4_07651' => 'col', 'COL.COLO4_14780' => 'col', 'COL.COLO4_18546' => 'col', 'COL.COLO4_18547' => 'col', 'COL.COLO4_23103' => 'col', 'COL.COLO4_30419' => 'col', 'COL.COLO4_34232' => 'col', 'Cpa.g.sc169.20' => 'cpa', 'Cpa.g.sc57.45' => 'cpa', 'Cpa.g.sc58.124' => 'cpa', 'Cpa.g.sc58.125' => 'cpa', 'Cpa.g.sc81.118' => 'cpa', 'Cpa.g.sc81.119' => 'cpa', 'Cre12.g524700' => 'cre', 'CsaV3_1G034430' => 'csa', 'CsaV3_1G034440' => 'csa', 'CsaV3_1G034450' => 'csa', 'CsaV3_3G034830' => 'csa', 'CsaV3_4G025090' => 'csa', 'CsaV3_5G018660' => 'csa', 'CsaV3_6G038160' => 'csa', 'CSS0003447' => 'camsi', 'CSS0017840' => 'camsi', 'CSS0019260' => 'camsi', 'CSS0040375' => 'camsi', 'CSS0042533' => 'camsi', 'DCAR_005960' => 'dca', 'DCAR_012104' => 'dca', 'DCAR_012105' => 'dca', 'DCAR_012293' => 'dca', 'DCAR_015632' => 'dca', 'DCAR_024602' => 'dca', 'DCAR_028752' => 'dca', 'Dinv06261' => 'din', 'Dinv13982' => 'din', 'Dinv17029' => 'din', 'Dinv18463' => 'din', 'Dinv33181' => 'din', 'Dinv35585' => 'din', 'Dinv37161' => 'din', 'Dinv42977' => 'din', 'Dinv43122' => 'din', 'Dinv44517' => 'din', 'Duzib093G0256' => 'dzi', 'Duzib106G1254' => 'dzi', 'Duzib128G1789' => 'dzi', 'Duzib133G0633' => 'dzi', 'Duzib138G0510' => 'dzi', 'Duzib150G1084' => 'dzi', 'Duzib168G0488' => 'dzi', 'Duzib168G1523' => 'dzi', 'Duzib170G0133' => 'dzi', 'ECA234G1433' => 'eca', 'ECA236G1432' => 'eca', 'ECA236G2256' => 'eca', 'ECA236G2365' => 'eca', 'ECA236G4830' => 'eca', 'ECA248G1505' => 'eca', 'EL10Ac3g06431' => 'bvu', 'EL10Ac5g12577' => 'bvu', 'EL10Ac6g13533' => 'bvu', 'EL10Ac7g16045' => 'bvu', 'Eucgr.A01281' => 'egr', 'Eucgr.B02326' => 'egr', 'Eucgr.H03532' => 'egr', 'Eucgr.K00553' => 'egr', 'Eucgr.K03116' => 'egr', 'FAN02G3963' => 'fan', 'FAN05G0438' => 'fan', 'FAN09G2434' => 'fan', 'FAN12G3984' => 'fan', 'FAN14G0798' => 'fan', 'FAN17G0652' => 'fan', 'FAN19G1988' => 'fan', 'FAN22G0632' => 'fan', 'FAN23G0387' => 'fan', 'FAN26G1323' => 'fan', 'FAN28G0666' => 'fan', 'FvH4_1g26080' => 'fve', 'FvH4_3g36780' => 'fve', 'FvH4_4g15270' => 'fve', 'FvH4_6g13490' => 'fve', 'Glyma.01G098700' => 'gma', 'Glyma.03G065900' => 'gma', 'Glyma.03G073754' => 'gma', 'Glyma.03G073758' => 'gma', 'Glyma.03G083200' => 'gma', 'Glyma.03G225500' => 'gma', 'Glyma.05G037766' => 'gma', 'Glyma.07G133500' => 'gma', 'Glyma.10G139400' => 'gma', 'Glyma.10G248900' => 'gma', 'Glyma.11G137800' => 'gma', 'Glyma.12G061300' => 'gma', 'Glyma.13G337900' => 'gma', 'Glyma.15G036600' => 'gma', 'Glyma.18G182800' => 'gma', 'Glyma.19G222500' => 'gma', 'Glyma.20G144800' => 'gma', 'Gohir.A01G222000' => 'ghi', 'Gohir.A03G044000' => 'ghi', 'Gohir.A03G044100' => 'ghi', 'Gohir.A04G083100' => 'ghi', 'Gohir.A07G127200' => 'ghi', 'Gohir.A07G132400' => 'ghi', 'Gohir.A08G000700' => 'ghi', 'Gohir.A11G327300' => 'ghi', 'Gohir.D01G211500' => 'ghi', 'Gohir.D03G123400' => 'ghi', 'Gohir.D03G123500' => 'ghi', 'Gohir.D04G121800' => 'ghi', 'Gohir.D07G131500' => 'ghi', 'Gohir.D07G136600' => 'ghi', 'Gohir.D08G011600' => 'ghi', 'Gohir.D11G346200' => 'ghi', 'Gorai.001G142800' => 'gra', 'Gorai.001G148700' => 'gra', 'Gorai.002G257300' => 'gra', 'Gorai.003G130000' => 'gra', 'Gorai.003G130100' => 'gra', 'Gorai.004G005300' => 'gra', 'Gorai.007G376500' => 'gra', 'Gorai.012G104700' => 'gra', 'GSVIVG01017946001' => 'vvi', 'GSVIVG01024928001' => 'vvi', 'GSVIVG01028227001' => 'vvi', 'GSVIVG01034151001' => 'vvi', 'HanXRQChr05g0135031' => 'han', 'HanXRQChr05g0135041' => 'han', 'HanXRQChr05g0140021' => 'han', 'HanXRQChr06g0178981' => 'han', 'HanXRQChr07g0188251' => 'han', 'HanXRQChr08g0235311' => 'han', 'HanXRQChr09g0271011' => 'han', 'HanXRQChr10g0293321' => 'han', 'HanXRQChr13g0388171' => 'han', 'Haze_00916' => 'cav', 'Haze_05063' => 'cav', 'Haze_20814' => 'cav', 'Haze_24128' => 'cav', 'Hma1.2p1_0745F.1_g212010' => 'hma', 'Hma1.2p1_0757F.1_g213260' => 'hma', 'Hma1.2p1_0936F.1_g238840' => 'hma', 'Hma1.2p1_1735F.1_g299890' => 'hma', 'Hma1.2p1_1861F.1_g305685' => 'hma', 'HPP92_003397' => 'vpl', 'HPP92_012597' => 'vpl', 'HPP92_015520' => 'vpl', 'HPP92_015539' => 'vpl', 'HPP92_020373' => 'vpl', 'Hund04938' => 'sun', 'Hund10677' => 'sun', 'Hund11033' => 'sun', 'Hund12155' => 'sun', 'Lalb_Chr01g0022551' => 'lal', 'Lalb_Chr03g0042341' => 'lal', 'Lalb_Chr07g0192931' => 'lal', 'Lalb_Chr12g0209551' => 'lal', 'Lalb_Chr19g0125251' => 'lal', 'Lalb_Chr19g0137891' => 'lal', 'Lalb_Chr21g0304641' => 'lal', 'Lalb_Chr21g0309881' => 'lal', 'Lj1A5T12' => 'lonja', 'Lj1C148G10' => 'lonja', 'Lj2A93T83' => 'lonja', 'Lj3A738G68' => 'lonja', 'Lj3C966T1' => 'lonja', 'Lj3g0018958' => 'lja', 'Lj3g0021831' => 'lja', 'Lj3g0025443' => 'lja', 'Lj4g0026809' => 'lja', 'Lj5g0012558' => 'lja', 'Lj5g0021586' => 'lja', 'Lsat_1_v5_gn_5_156840' => 'lsa', 'Lsat_1_v5_gn_8_73460' => 'lsa', 'Lsat_1_v5_gn_8_73481' => 'lsa', 'Lsat_1_v5_gn_9_31601' => 'lsa', 'Lsat_1_v5_gn_9_77320' => 'lsa', 'Manes.01G171300' => 'mes', 'Manes.01G171400' => 'mes', 'Manes.01G236100' => 'mes', 'Manes.02G130500' => 'mes', 'Manes.02G130600' => 'mes', 'Manes.03G180200' => 'mes', 'Manes.05G007000' => 'mes', 'Manes.08G084400' => 'mes', 'Manes.09G092600' => 'mes', 'Manes.15G027900' => 'mes', 'MBI04_g40948_MAGBIO' => 'mbi', 'MBI14_g12123_MAGBIO' => 'mbi', 'MBI18_g28915_MAGBIO' => 'mbi', 'MCO09G053' => 'mco', 'MCO11G782' => 'mco', 'MCO15G215' => 'mco', 'MD03G1088500' => 'mdo', 'MD03G1088600' => 'mdo', 'MD04G1130800' => 'mdo', 'MD09G1291700' => 'mdo', 'MD11G1097500' => 'mdo', 'MD11G1097600' => 'mdo', 'MD12G1143900' => 'mdo', 'MD13G1191400' => 'mdo', 'MD16G1191500' => 'mdo', 'Medtr1g085570' => 'mtr', 'Medtr1g104610' => 'mtr', 'Medtr2g097520' => 'mtr', 'Medtr4g021800' => 'mtr', 'Medtr4g021825' => 'mtr', 'Medtr4g064270' => 'mtr', 'Medtr4g064380' => 'mtr', 'Medtr7g062150' => 'mtr', 'MELO3C003138.2' => 'cme', 'MELO3C005187.2' => 'cme', 'MELO3C009252.2' => 'cme', 'MELO3C014481.2' => 'cme', 'MELO3C020616.2' => 'cme', 'MELO3C020617.2' => 'cme', 'MELO3C020618.2' => 'cme', 'Migut.G00328' => 'egut', 'Migut.J00320' => 'egut', 'Migut.L01000' => 'egut', 'Migut.L01953' => 'egut', 'MSTRG.10253' => 'ama', 'MSTRG.19077' => 'ama', 'MSTRG.26780' => 'ama', 'MSTRG.4023' => 'ama', 'MSTRG.5655' => 'ama', 'MSTRG.9992' => 'ama', 'Nitab4.5_0000043g0310' => 'nta', 'Nitab4.5_0000463g0080' => 'nta', 'Nitab4.5_0000705g0170' => 'nta', 'Nitab4.5_0001326g0060' => 'nta', 'Nitab4.5_0001628g0030' => 'nta', 'Nitab4.5_0002103g0110' => 'nta', 'Nitab4.5_0002946g0030' => 'nta', 'Nitab4.5_0004639g0030' => 'nta', 'Nn2g11149' => 'nnu', 'Nn2g13389' => 'nnu', 'Nn4g25326' => 'nnu', 'Nn4g26290' => 'nnu', 'Nn5g29865' => 'nnu', 'Oeu004163.1' => 'oeu', 'Oeu006901.1' => 'oeu', 'Oeu010096.1' => 'oeu', 'Oeu024340.1' => 'oeu', 'Oeu048369.1' => 'oeu', 'Os01g0973000' => 'osa', 'Os03g0273800' => 'osa', 'Os03g0701200' => 'osa', 'Os03g0834050' => 'osa', 'Os07g0634400' => 'osa', 'Peaxi162Scf00092g01414' => 'pax', 'Peaxi162Scf00165g00818' => 'pax', 'Peaxi162Scf00309g00516' => 'pax', 'Peaxi162Scf00774g00218' => 'pax', 'PGR004G1824' => 'pgr', 'PGR004G2606' => 'pgr', 'PGR031G2716' => 'pgr', 'PGR102G2460' => 'pgr', 'PGR142G2599' => 'pgr', 'PGSC0003DMG400000843' => 'stu', 'PGSC0003DMG400008829' => 'stu', 'PGSC0003DMG400030418' => 'stu', 'PGSC0003DMG400031834' => 'stu', 'PGSC0003DMG401028300' => 'stu', 'PGSC0003DMG402028300' => 'stu', 'Phvul.001G219300' => 'pvu', 'Phvul.007G056000' => 'pvu', 'Phvul.007G208000' => 'pvu', 'Phvul.008G119500' => 'pvu', 'Phvul.010G011200' => 'pvu', 'Phvul.010G014800' => 'pvu', 'Phvul.011G062900' => 'pvu', 'Phvul.L007043' => 'pvu', 'Potri.001G242300' => 'ptr', 'Potri.002G185300' => 'ptr', 'Potri.006G086900' => 'ptr', 'Potri.008G151700' => 'ptr', 'Potri.009G033500' => 'ptr', 'Potri.010G089300' => 'ptr', 'Potri.014G110800' => 'ptr', 'Pp3c27_8130' => 'ppa', 'Pp3c6_27410' => 'ppa', 'PRCOL_00001659' => 'pco', 'PRCOL_00001927' => 'pco', 'PRCOL_00003649' => 'pco', 'Prupe.1G011600' => 'ppe', 'Prupe.3G000800' => 'ppe', 'Prupe.3G001100' => 'ppe', 'Prupe.6G072700' => 'ppe', 'Prupe.6G072800' => 'ppe', 'Prupe.6G257300' => 'ppe', 'Prupe.8G033000' => 'ppe', 'Psat0s2633g0080' => 'psa', 'Psat0s3396g0080' => 'psa', 'Psat0s3396g0200' => 'psa', 'Psat3g139080' => 'psa', 'Psat5g285080' => 'psa', 'Psat6g157760' => 'psa', 'Psat6g208440' => 'psa', 'Psat7g215320' => 'psa', 'Psat7g215400' => 'psa', 'Psat7g235600' => 'psa', 'Psat7g235760' => 'psa', 'PSO063G4603' => 'pso', 'PSO210G0182' => 'pso', 'PSO210G0196' => 'pso', 'PSO339G0394' => 'pso', 'PSO339G4127' => 'pso', 'PSO513G0064' => 'pso', 'PSO761G0079' => 'pso', 'QL01p031003' => 'qlo', 'QL01p031078' => 'qlo', 'QL06p003004' => 'qlo', 'QL07p048731' => 'qlo', 'QL09p037427' => 'qlo', 'RcHm_v2.0_Chr3g0466361' => 'rch', 'RcHm_v2.0_Chr3g0485571' => 'rch', 'RcHm_v2.0_Chr4g0416551' => 'rch', 'RcHm_v2.0_Chr5g0065831' => 'rch', 'Rhsim01G0230500' => 'rsi', 'Rhsim05G0194000' => 'rsi', 'Rhsim08G0250400' => 'rsi', 'Sabra02G0131000' => 'sbr', 'Sabra06G0066300' => 'sbr', 'Sabra08G0115500' => 'sbr', 'Sabra09G0023900' => 'sbr', 'Sabra10G0054000' => 'sbr', 'Sabra14G0081500' => 'sbr', 'Sabra16G0147100' => 'sbr', 'SalBow2G2957' => 'sbo', 'SalBow4G3320' => 'sbo', 'SalBow8G1894' => 'sbo', 'Sc07g0007950' => 'sci', 'Sc12g0001360' => 'sci', 'Sc13g0004330' => 'sci', 'Sc20g0005010' => 'sci', 'Sed0000361' => 'sed', 'Sed0001706' => 'sed', 'Sed0002422' => 'sed', 'Sed0004029' => 'sed', 'Sed0004602' => 'sed', 'Sed0004943' => 'sed', 'Sed0008646' => 'sed', 'Sed0023313' => 'sed', 'Sed0024843' => 'sed', 'SEGI_00081' => 'sgi', 'SEGI_00947' => 'sgi', 'SEGI_04046' => 'sgi', 'SEGI_06880' => 'sgi', 'SEGI_09736' => 'sgi', 'SEGI_12741' => 'sgi', 'SEGI_14530' => 'sgi', 'SEGI_20705' => 'sgi', 'SEGI_26088' => 'sgi', 'SEGI_28323' => 'sgi', 'SEGI_33343' => 'sgi', 'SGA_v2.0_scaffold126G33775' => 'sas', 'SGA_v2.0_scaffold2G01337' => 'sas', 'SGA_v2.0_scaffold38G15006' => 'sas', 'SGA_v2.0_scaffold39G15264' => 'sas', 'SGA_v2.0_scaffold453G51880' => 'sas', 'SHI12696' => 'shi', 'SMO367G1096' => 'smo', 'Solyc01g068630.3' => 'sly', 'Solyc05g011880.3' => 'sly', 'Solyc06g076300.3' => 'sly', 'Solyc09g010940.4' => 'sly', 'Solyc09g075890.3' => 'sly', 'Sopen01g030560' => 'spe', 'Sopen05g006630' => 'spe', 'Sopen06g032720' => 'spe', 'Sopen09g005660' => 'spe', 'Sopen09g030690' => 'spe', 'Sp4g14540' => 'spa', 'Sp4g20030' => 'spa', 'Sp5g01320' => 'spa', 'Sp6g21170' => 'spa', 'Sp6g21180' => 'spa', 'Sp6g21190' => 'spa', 'Sp6g40220' => 'spa', 'TAR362G0122' => 'tar', 'TAR362G1338' => 'tar', 'TAR369G0590' => 'tar', 'TAR371G0824' => 'tar', 'TAR622G1429' => 'tar', 'TAR623G0734' => 'tar', 'TAR625G0441' => 'tar', 'TAR629G0976' => 'tar', 'TAR633G1195' => 'tar', 'TAR636G2660' => 'tar', 'THA.LOC104799440' => 'tha', 'THA.LOC104800966' => 'tha', 'THA.LOC104806559' => 'tha', 'THA.LOC104810765' => 'tha', 'THA.LOC104816266' => 'tha', 'THA.LOC104817419' => 'tha', 'THA.LOC104827021' => 'tha', 'Thecc.01G327400' => 'tca', 'Thecc.04G229200' => 'tca', 'Thecc.05G037400' => 'tca', 'Thecc.09G318600' => 'tca', 'Thecc.09G318700' => 'tca', 'Thhalv10006238m.g' => 'esa', 'Thhalv10014321m.g' => 'esa', 'Thhalv10014335m.g' => 'esa', 'Thhalv10015826m.g' => 'esa', 'Thhalv10017107m.g' => 'esa', 'Thhalv10017180m.g' => 'esa', 'Thhalv10029339m.g' => 'esa', 'TPR.G1699' => 'tpr', 'TPR.G23609' => 'tpr', 'TPR.G3081' => 'tpr', 'TPR.G40397' => 'tpr', 'TPR.G5522' => 'tpr', 'TPR.G5618' => 'tpr', 'TPR.G5626' => 'tpr', 'TWI09G1632' => 'twi', 'TWI23G1230' => 'twi', 'TWI53G1064' => 'twi', 'TWI59G0751' => 'twi', 'TWI74G0947' => 'twi', 'TWI77G0337' => 'twi', 'TWI79G1254' => 'twi', 'unitig_0.g2341' => 'ugi', 'unitig_26.g10006' => 'ugi', 'unitig_26.g10008' => 'ugi', 'unitig_26.g9192' => 'ugi', 'vmacro14547' => 'vma', 'vmacro15333' => 'vma', 'vmacro18743' => 'vma', 'vmacro20166' => 'vma', 'VMungo0331G0523' => 'vmu', 'VMungo0331G1202' => 'vmu', 'VMungo0720G1228' => 'vmu', 'VMungo0720G1514' => 'vmu', 'VMungo1080G0169' => 'vmu', 'VMungo1127G1475' => 'vmu', 'VMungo1383G1208' => 'vmu', 'VMungo1383G1698' => 'vmu', 'Zm00001eb012270' => 'zma', 'Zm00001eb054100' => 'zma', 'Zm00001eb063350' => 'zma', 'Zm00001eb328560' => 'zma', 'Zm00001eb342820' => 'zma', 'Zm00001eb362210' => 'zma', 'Zm00001eb397730' => 'zma', 'Zm00001eb399750' => 'zma' ), 'gf_id' => 'HOM05D000959', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000959' ), 'data_identifier' => 'HOM05D000959', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000959', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '622', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p07100' => 'bna', 'A03p11720' => 'bna', 'A05p08300' => 'bna', 'A05p13380' => 'bna', 'A09p54130' => 'bna', 'A10p16690' => 'bna', 'A10p16700' => 'bna', 'A10p33390' => 'bna', 'Aa31LG10G16020' => 'aar', 'Aa31LG1G11810' => 'aar', 'Aa31LG1G11830' => 'aar', 'Aa31LG1G22510' => 'aar', 'Aa31LG5G4890' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5793' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2310' => 'aag', 'Actinidia08499' => 'ach', 'Actinidia11262' => 'ach', 'Actinidia23926' => 'ach', 'Actinidia34420' => 'ach', 'Actinidia36970' => 'ach', 'Ah.02g111220' => 'amhyb', 'Ah.15g097750' => 'amhyb', 'AL4G27500' => 'aly', 'AL6G11470' => 'aly', 'AL8G35950' => 'aly', 'AL8G35960' => 'aly', 'AL8G35970' => 'aly', 'Aqoxy1G00912' => 'aox', 'Aqoxy2G02253' => 'aox', 'Aqoxy2G02411' => 'aox', 'Aqoxy5G00485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BZ66YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K8ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM4FUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6BF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HFV7XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25JBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0YNNV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MAKK6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P70IT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP2Z6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V61LZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YWP64R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3S9AI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7PGHH' => 'arhy', 'AT2G32150' => 'ath', 'AT3G62040' => 'ath', 'AT5G02230' => 'ath', 'AT5G59480' => 'ath', 'AT5G59490' => 'ath', 'ATR0332G060' => 'atr', 'ATR0559G190' => 'atr', 'ATR0693G294' => 'atr', 'Atru.chr3.3975' => 'acertr', 'Atru.chr3.3976' => 'acertr', 'Atru.chr3.3977' => 'acertr', 'Atru.chr4.2498' => 'acertr', 'Atru.chr5.838' => 'acertr', 'Atru.chr8.1990' => 'acertr', 'Atru.chr8.1991' => 'acertr', 'Atru.chr8.1992' => 'acertr', 'AUR62001759' => 'cqu', 'AUR62009545' => 'cqu', 'AUR62010474' => 'cqu', 'AUR62025820' => 'cqu', 'AUR62030422' => 'cqu', 'AUR62033605' => 'cqu', 'AUR62038615' => 'cqu', 'AUR62041347' => 'cqu', 'BcaB01g04574' => 'bca', 'BcaB02g09263' => 'bca', 'BcaB02g10453' => 'bca', 'BcaB05g22513' => 'bca', 'BcaB08g36253' => 'bca', 'BcaB08g36254' => 'bca', 'BcaC01g06519' => 'bca', 'BcaC02g11889' => 'bca', 'BcaC03g14010' => 'bca', 'BcaC03g18439' => 'bca', 'BcaC04g19765' => 'bca', 'BcaC09g48432' => 'bca', 'BcaNung07302' => 'bca', 'BolC2t06040H' => 'bol', 'BolC2t07346H' => 'bol', 'BolC3t13817H' => 'bol', 'BolC4t22625H' => 'bol', 'BolC4t23297H' => 'bol', 'BolC8t51278H' => 'bol', 'BolC9t58050H' => 'bol', 'BolC9t58051H' => 'bol', 'BolC9t60163H' => 'bol', 'BraA02t04712Z' => 'bra', 'BraA02t05791Z' => 'bra', 'BraA03t10483Z' => 'bra', 'BraA05t19795Z' => 'bra', 'BraA05t20276Z' => 'bra', 'BraA09t40827Z' => 'bra', 'BraA10t43750Z' => 'bra', 'BraA10t43751Z' => 'bra', 'BraA10t45370Z' => 'bra', 'C02p00400' => 'bna', 'C02p12460' => 'bna', 'C03p13680' => 'bna', 'C04p10270' => 'bna', 'C04p17500' => 'bna', 'C08p37010' => 'bna', 'C09p51880' => 'bna', 'C09p51890' => 'bna', 'C09p74300' => 'bna', 'CAN.G179.26' => 'can', 'CAN.G3384.1' => 'can', 'CAN.G394.68' => 'can', 'CAN.G907.13' => 'can', 'CANSAT11G0012' => 'cansat', 'CANSAT25G1586' => 'cansat', 'CANSAT35G0735' => 'cansat', 'CANSAT54G0556' => 'cansat', 'CANSAT64G0356' => 'cansat', 'CANSAT78G2042' => 'cansat', 'CARHR125920' => 'chi', 'CARHR131910' => 'chi', 'CARHR172390' => 'chi', 'CARHR211140' => 'chi', 'CARHR285850' => 'chi', 'CARHR285860' => 'chi', 'Carub.0004s1347' => 'cru', 'Carub.0004s1960' => 'cru', 'Carub.0005s2880' => 'cru', 'Carub.0006s0107' => 'cru', 'Carub.0008s2015' => 'cru', 'Carub.0008s2016' => 'cru', 'Carub.0008s2017' => 'cru', 'Ca_01315_v3' => 'car', 'Ca_05063_v3' => 'car', 'Ca_10231_v3' => 'car', 'Ca_10913_v3' => 'car', 'Ca_19156_v3' => 'car', 'Ca_23644_v3' => 'car', 'Ca_26735_v3' => 'car', 'Cc01_g13130' => 'ccan', 'Cc02_g21690' => 'ccan', 'Cc03_g03600' => 'ccan', 'Cc06_g02510' => 'ccan', 'CDE02G1265' => 'cde', 'CDE05G0415' => 'cde', 'CDE08G1082' => 'cde', 'Cfa005780' => 'cfa', 'Cfa011522' => 'cfa', 'Cfa011523' => 'cfa', 'Cfa015627' => 'cfa', 'Cfa017359' => 'cfa', 'Ciclev10005687m.g' => 'ccl', 'Ciclev10012173m.g' => 'ccl', 'Ciclev10021621m.g' => 'ccl', 'Ciclev10028968m.g' => 'ccl', 'Ciclev10029907m.g' => 'ccl', 'CiPaw.01G164800' => 'cil', 'CiPaw.07G083700' => 'cil', 'CiPaw.07G127000' => 'cil', 'CiPaw.07G136900' => 'cil', 'CiPaw.08G081700' => 'cil', 'CiPaw.09G194600' => 'cil', 'CiPaw.10G146500' => 'cil', 'CiPaw.13G091500' => 'cil', 'CiPaw.13G091600' => 'cil', 'ClCG00G003390' => 'cla', 'ClCG01G007220' => 'cla', 'ClCG03G001370' => 'cla', 'ClCG04G008100' => 'cla', 'ClCG06G006110' => 'cla', 'ClCG06G006130' => 'cla', 'ClCG10G021210' => 'cla', 'COL.COLO4_07648' => 'col', 'COL.COLO4_07650' => 'col', 'COL.COLO4_07651' => 'col', 'COL.COLO4_14780' => 'col', 'COL.COLO4_18546' => 'col', 'COL.COLO4_18547' => 'col', 'COL.COLO4_23103' => 'col', 'COL.COLO4_30419' => 'col', 'COL.COLO4_34232' => 'col', 'Cpa.g.sc169.20' => 'cpa', 'Cpa.g.sc57.45' => 'cpa', 'Cpa.g.sc58.124' => 'cpa', 'Cpa.g.sc58.125' => 'cpa', 'Cpa.g.sc81.118' => 'cpa', 'Cpa.g.sc81.119' => 'cpa', 'Cre12.g524700' => 'cre', 'CsaV3_1G034430' => 'csa', 'CsaV3_1G034440' => 'csa', 'CsaV3_1G034450' => 'csa', 'CsaV3_3G034830' => 'csa', 'CsaV3_4G025090' => 'csa', 'CsaV3_5G018660' => 'csa', 'CsaV3_6G038160' => 'csa', 'CSS0003447' => 'camsi', 'CSS0017840' => 'camsi', 'CSS0019260' => 'camsi', 'CSS0040375' => 'camsi', 'CSS0042533' => 'camsi', 'DCAR_005960' => 'dca', 'DCAR_012104' => 'dca', 'DCAR_012105' => 'dca', 'DCAR_012293' => 'dca', 'DCAR_015632' => 'dca', 'DCAR_024602' => 'dca', 'DCAR_028752' => 'dca', 'Dinv06261' => 'din', 'Dinv13982' => 'din', 'Dinv17029' => 'din', 'Dinv18463' => 'din', 'Dinv33181' => 'din', 'Dinv35585' => 'din', 'Dinv37161' => 'din', 'Dinv42977' => 'din', 'Dinv43122' => 'din', 'Dinv44517' => 'din', 'Duzib093G0256' => 'dzi', 'Duzib106G1254' => 'dzi', 'Duzib128G1789' => 'dzi', 'Duzib133G0633' => 'dzi', 'Duzib138G0510' => 'dzi', 'Duzib150G1084' => 'dzi', 'Duzib168G0488' => 'dzi', 'Duzib168G1523' => 'dzi', 'Duzib170G0133' => 'dzi', 'ECA234G1433' => 'eca', 'ECA236G1432' => 'eca', 'ECA236G2256' => 'eca', 'ECA236G2365' => 'eca', 'ECA236G4830' => 'eca', 'ECA248G1505' => 'eca', 'EL10Ac3g06431' => 'bvu', 'EL10Ac5g12577' => 'bvu', 'EL10Ac6g13533' => 'bvu', 'EL10Ac7g16045' => 'bvu', 'Eucgr.A01281' => 'egr', 'Eucgr.B02326' => 'egr', 'Eucgr.H03532' => 'egr', 'Eucgr.K00553' => 'egr', 'Eucgr.K03116' => 'egr', 'FAN02G3963' => 'fan', 'FAN05G0438' => 'fan', 'FAN09G2434' => 'fan', 'FAN12G3984' => 'fan', 'FAN14G0798' => 'fan', 'FAN17G0652' => 'fan', 'FAN19G1988' => 'fan', 'FAN22G0632' => 'fan', 'FAN23G0387' => 'fan', 'FAN26G1323' => 'fan', 'FAN28G0666' => 'fan', 'FvH4_1g26080' => 'fve', 'FvH4_3g36780' => 'fve', 'FvH4_4g15270' => 'fve', 'FvH4_6g13490' => 'fve', 'Glyma.01G098700' => 'gma', 'Glyma.03G065900' => 'gma', 'Glyma.03G073754' => 'gma', 'Glyma.03G073758' => 'gma', 'Glyma.03G083200' => 'gma', 'Glyma.03G225500' => 'gma', 'Glyma.05G037766' => 'gma', 'Glyma.07G133500' => 'gma', 'Glyma.10G139400' => 'gma', 'Glyma.10G248900' => 'gma', 'Glyma.11G137800' => 'gma', 'Glyma.12G061300' => 'gma', 'Glyma.13G337900' => 'gma', 'Glyma.15G036600' => 'gma', 'Glyma.18G182800' => 'gma', 'Glyma.19G222500' => 'gma', 'Glyma.20G144800' => 'gma', 'Gohir.A01G222000' => 'ghi', 'Gohir.A03G044000' => 'ghi', 'Gohir.A03G044100' => 'ghi', 'Gohir.A04G083100' => 'ghi', 'Gohir.A07G127200' => 'ghi', 'Gohir.A07G132400' => 'ghi', 'Gohir.A08G000700' => 'ghi', 'Gohir.A11G327300' => 'ghi', 'Gohir.D01G211500' => 'ghi', 'Gohir.D03G123400' => 'ghi', 'Gohir.D03G123500' => 'ghi', 'Gohir.D04G121800' => 'ghi', 'Gohir.D07G131500' => 'ghi', 'Gohir.D07G136600' => 'ghi', 'Gohir.D08G011600' => 'ghi', 'Gohir.D11G346200' => 'ghi', 'Gorai.001G142800' => 'gra', 'Gorai.001G148700' => 'gra', 'Gorai.002G257300' => 'gra', 'Gorai.003G130000' => 'gra', 'Gorai.003G130100' => 'gra', 'Gorai.004G005300' => 'gra', 'Gorai.007G376500' => 'gra', 'Gorai.012G104700' => 'gra', 'GSVIVG01017946001' => 'vvi', 'GSVIVG01024928001' => 'vvi', 'GSVIVG01028227001' => 'vvi', 'GSVIVG01034151001' => 'vvi', 'HanXRQChr05g0135031' => 'han', 'HanXRQChr05g0135041' => 'han', 'HanXRQChr05g0140021' => 'han', 'HanXRQChr06g0178981' => 'han', 'HanXRQChr07g0188251' => 'han', 'HanXRQChr08g0235311' => 'han', 'HanXRQChr09g0271011' => 'han', 'HanXRQChr10g0293321' => 'han', 'HanXRQChr13g0388171' => 'han', 'Haze_00916' => 'cav', 'Haze_05063' => 'cav', 'Haze_20814' => 'cav', 'Haze_24128' => 'cav', 'Hma1.2p1_0745F.1_g212010' => 'hma', 'Hma1.2p1_0757F.1_g213260' => 'hma', 'Hma1.2p1_0936F.1_g238840' => 'hma', 'Hma1.2p1_1735F.1_g299890' => 'hma', 'Hma1.2p1_1861F.1_g305685' => 'hma', 'HPP92_003397' => 'vpl', 'HPP92_012597' => 'vpl', 'HPP92_015520' => 'vpl', 'HPP92_015539' => 'vpl', 'HPP92_020373' => 'vpl', 'Hund04938' => 'sun', 'Hund10677' => 'sun', 'Hund11033' => 'sun', 'Hund12155' => 'sun', 'Lalb_Chr01g0022551' => 'lal', 'Lalb_Chr03g0042341' => 'lal', 'Lalb_Chr07g0192931' => 'lal', 'Lalb_Chr12g0209551' => 'lal', 'Lalb_Chr19g0125251' => 'lal', 'Lalb_Chr19g0137891' => 'lal', 'Lalb_Chr21g0304641' => 'lal', 'Lalb_Chr21g0309881' => 'lal', 'Lj1A5T12' => 'lonja', 'Lj1C148G10' => 'lonja', 'Lj2A93T83' => 'lonja', 'Lj3A738G68' => 'lonja', 'Lj3C966T1' => 'lonja', 'Lj3g0018958' => 'lja', 'Lj3g0021831' => 'lja', 'Lj3g0025443' => 'lja', 'Lj4g0026809' => 'lja', 'Lj5g0012558' => 'lja', 'Lj5g0021586' => 'lja', 'Lsat_1_v5_gn_5_156840' => 'lsa', 'Lsat_1_v5_gn_8_73460' => 'lsa', 'Lsat_1_v5_gn_8_73481' => 'lsa', 'Lsat_1_v5_gn_9_31601' => 'lsa', 'Lsat_1_v5_gn_9_77320' => 'lsa', 'Manes.01G171300' => 'mes', 'Manes.01G171400' => 'mes', 'Manes.01G236100' => 'mes', 'Manes.02G130500' => 'mes', 'Manes.02G130600' => 'mes', 'Manes.03G180200' => 'mes', 'Manes.05G007000' => 'mes', 'Manes.08G084400' => 'mes', 'Manes.09G092600' => 'mes', 'Manes.15G027900' => 'mes', 'MBI04_g40948_MAGBIO' => 'mbi', 'MBI14_g12123_MAGBIO' => 'mbi', 'MBI18_g28915_MAGBIO' => 'mbi', 'MCO09G053' => 'mco', 'MCO11G782' => 'mco', 'MCO15G215' => 'mco', 'MD03G1088500' => 'mdo', 'MD03G1088600' => 'mdo', 'MD04G1130800' => 'mdo', 'MD09G1291700' => 'mdo', 'MD11G1097500' => 'mdo', 'MD11G1097600' => 'mdo', 'MD12G1143900' => 'mdo', 'MD13G1191400' => 'mdo', 'MD16G1191500' => 'mdo', 'Medtr1g085570' => 'mtr', 'Medtr1g104610' => 'mtr', 'Medtr2g097520' => 'mtr', 'Medtr4g021800' => 'mtr', 'Medtr4g021825' => 'mtr', 'Medtr4g064270' => 'mtr', 'Medtr4g064380' => 'mtr', 'Medtr7g062150' => 'mtr', 'MELO3C003138.2' => 'cme', 'MELO3C005187.2' => 'cme', 'MELO3C009252.2' => 'cme', 'MELO3C014481.2' => 'cme', 'MELO3C020616.2' => 'cme', 'MELO3C020617.2' => 'cme', 'MELO3C020618.2' => 'cme', 'Migut.G00328' => 'egut', 'Migut.J00320' => 'egut', 'Migut.L01000' => 'egut', 'Migut.L01953' => 'egut', 'MSTRG.10253' => 'ama', 'MSTRG.19077' => 'ama', 'MSTRG.26780' => 'ama', 'MSTRG.4023' => 'ama', 'MSTRG.5655' => 'ama', 'MSTRG.9992' => 'ama', 'Nitab4.5_0000043g0310' => 'nta', 'Nitab4.5_0000463g0080' => 'nta', 'Nitab4.5_0000705g0170' => 'nta', 'Nitab4.5_0001326g0060' => 'nta', 'Nitab4.5_0001628g0030' => 'nta', 'Nitab4.5_0002103g0110' => 'nta', 'Nitab4.5_0002946g0030' => 'nta', 'Nitab4.5_0004639g0030' => 'nta', 'Nn2g11149' => 'nnu', 'Nn2g13389' => 'nnu', 'Nn4g25326' => 'nnu', 'Nn4g26290' => 'nnu', 'Nn5g29865' => 'nnu', 'Oeu004163.1' => 'oeu', 'Oeu006901.1' => 'oeu', 'Oeu010096.1' => 'oeu', 'Oeu024340.1' => 'oeu', 'Oeu048369.1' => 'oeu', 'Os01g0973000' => 'osa', 'Os03g0273800' => 'osa', 'Os03g0701200' => 'osa', 'Os03g0834050' => 'osa', 'Os07g0634400' => 'osa', 'Peaxi162Scf00092g01414' => 'pax', 'Peaxi162Scf00165g00818' => 'pax', 'Peaxi162Scf00309g00516' => 'pax', 'Peaxi162Scf00774g00218' => 'pax', 'PGR004G1824' => 'pgr', 'PGR004G2606' => 'pgr', 'PGR031G2716' => 'pgr', 'PGR102G2460' => 'pgr', 'PGR142G2599' => 'pgr', 'PGSC0003DMG400000843' => 'stu', 'PGSC0003DMG400008829' => 'stu', 'PGSC0003DMG400030418' => 'stu', 'PGSC0003DMG400031834' => 'stu', 'PGSC0003DMG401028300' => 'stu', 'PGSC0003DMG402028300' => 'stu', 'Phvul.001G219300' => 'pvu', 'Phvul.007G056000' => 'pvu', 'Phvul.007G208000' => 'pvu', 'Phvul.008G119500' => 'pvu', 'Phvul.010G011200' => 'pvu', 'Phvul.010G014800' => 'pvu', 'Phvul.011G062900' => 'pvu', 'Phvul.L007043' => 'pvu', 'Potri.001G242300' => 'ptr', 'Potri.002G185300' => 'ptr', 'Potri.006G086900' => 'ptr', 'Potri.008G151700' => 'ptr', 'Potri.009G033500' => 'ptr', 'Potri.010G089300' => 'ptr', 'Potri.014G110800' => 'ptr', 'Pp3c27_8130' => 'ppa', 'Pp3c6_27410' => 'ppa', 'PRCOL_00001659' => 'pco', 'PRCOL_00001927' => 'pco', 'PRCOL_00003649' => 'pco', 'Prupe.1G011600' => 'ppe', 'Prupe.3G000800' => 'ppe', 'Prupe.3G001100' => 'ppe', 'Prupe.6G072700' => 'ppe', 'Prupe.6G072800' => 'ppe', 'Prupe.6G257300' => 'ppe', 'Prupe.8G033000' => 'ppe', 'Psat0s2633g0080' => 'psa', 'Psat0s3396g0080' => 'psa', 'Psat0s3396g0200' => 'psa', 'Psat3g139080' => 'psa', 'Psat5g285080' => 'psa', 'Psat6g157760' => 'psa', 'Psat6g208440' => 'psa', 'Psat7g215320' => 'psa', 'Psat7g215400' => 'psa', 'Psat7g235600' => 'psa', 'Psat7g235760' => 'psa', 'PSO063G4603' => 'pso', 'PSO210G0182' => 'pso', 'PSO210G0196' => 'pso', 'PSO339G0394' => 'pso', 'PSO339G4127' => 'pso', 'PSO513G0064' => 'pso', 'PSO761G0079' => 'pso', 'QL01p031003' => 'qlo', 'QL01p031078' => 'qlo', 'QL06p003004' => 'qlo', 'QL07p048731' => 'qlo', 'QL09p037427' => 'qlo', 'RcHm_v2.0_Chr3g0466361' => 'rch', 'RcHm_v2.0_Chr3g0485571' => 'rch', 'RcHm_v2.0_Chr4g0416551' => 'rch', 'RcHm_v2.0_Chr5g0065831' => 'rch', 'Rhsim01G0230500' => 'rsi', 'Rhsim05G0194000' => 'rsi', 'Rhsim08G0250400' => 'rsi', 'Sabra02G0131000' => 'sbr', 'Sabra06G0066300' => 'sbr', 'Sabra08G0115500' => 'sbr', 'Sabra09G0023900' => 'sbr', 'Sabra10G0054000' => 'sbr', 'Sabra14G0081500' => 'sbr', 'Sabra16G0147100' => 'sbr', 'SalBow2G2957' => 'sbo', 'SalBow4G3320' => 'sbo', 'SalBow8G1894' => 'sbo', 'Sc07g0007950' => 'sci', 'Sc12g0001360' => 'sci', 'Sc13g0004330' => 'sci', 'Sc20g0005010' => 'sci', 'Sed0000361' => 'sed', 'Sed0001706' => 'sed', 'Sed0002422' => 'sed', 'Sed0004029' => 'sed', 'Sed0004602' => 'sed', 'Sed0004943' => 'sed', 'Sed0008646' => 'sed', 'Sed0023313' => 'sed', 'Sed0024843' => 'sed', 'SEGI_00081' => 'sgi', 'SEGI_00947' => 'sgi', 'SEGI_04046' => 'sgi', 'SEGI_06880' => 'sgi', 'SEGI_09736' => 'sgi', 'SEGI_12741' => 'sgi', 'SEGI_14530' => 'sgi', 'SEGI_20705' => 'sgi', 'SEGI_26088' => 'sgi', 'SEGI_28323' => 'sgi', 'SEGI_33343' => 'sgi', 'SGA_v2.0_scaffold126G33775' => 'sas', 'SGA_v2.0_scaffold2G01337' => 'sas', 'SGA_v2.0_scaffold38G15006' => 'sas', 'SGA_v2.0_scaffold39G15264' => 'sas', 'SGA_v2.0_scaffold453G51880' => 'sas', 'SHI12696' => 'shi', 'SMO367G1096' => 'smo', 'Solyc01g068630.3' => 'sly', 'Solyc05g011880.3' => 'sly', 'Solyc06g076300.3' => 'sly', 'Solyc09g010940.4' => 'sly', 'Solyc09g075890.3' => 'sly', 'Sopen01g030560' => 'spe', 'Sopen05g006630' => 'spe', 'Sopen06g032720' => 'spe', 'Sopen09g005660' => 'spe', 'Sopen09g030690' => 'spe', 'Sp4g14540' => 'spa', 'Sp4g20030' => 'spa', 'Sp5g01320' => 'spa', 'Sp6g21170' => 'spa', 'Sp6g21180' => 'spa', 'Sp6g21190' => 'spa', 'Sp6g40220' => 'spa', 'TAR362G0122' => 'tar', 'TAR362G1338' => 'tar', 'TAR369G0590' => 'tar', 'TAR371G0824' => 'tar', 'TAR622G1429' => 'tar', 'TAR623G0734' => 'tar', 'TAR625G0441' => 'tar', 'TAR629G0976' => 'tar', 'TAR633G1195' => 'tar', 'TAR636G2660' => 'tar', 'THA.LOC104799440' => 'tha', 'THA.LOC104800966' => 'tha', 'THA.LOC104806559' => 'tha', 'THA.LOC104810765' => 'tha', 'THA.LOC104816266' => 'tha', 'THA.LOC104817419' => 'tha', 'THA.LOC104827021' => 'tha', 'Thecc.01G327400' => 'tca', 'Thecc.04G229200' => 'tca', 'Thecc.05G037400' => 'tca', 'Thecc.09G318600' => 'tca', 'Thecc.09G318700' => 'tca', 'Thhalv10006238m.g' => 'esa', 'Thhalv10014321m.g' => 'esa', 'Thhalv10014335m.g' => 'esa', 'Thhalv10015826m.g' => 'esa', 'Thhalv10017107m.g' => 'esa', 'Thhalv10017180m.g' => 'esa', 'Thhalv10029339m.g' => 'esa', 'TPR.G1699' => 'tpr', 'TPR.G23609' => 'tpr', 'TPR.G3081' => 'tpr', 'TPR.G40397' => 'tpr', 'TPR.G5522' => 'tpr', 'TPR.G5618' => 'tpr', 'TPR.G5626' => 'tpr', 'TWI09G1632' => 'twi', 'TWI23G1230' => 'twi', 'TWI53G1064' => 'twi', 'TWI59G0751' => 'twi', 'TWI74G0947' => 'twi', 'TWI77G0337' => 'twi', 'TWI79G1254' => 'twi', 'unitig_0.g2341' => 'ugi', 'unitig_26.g10006' => 'ugi', 'unitig_26.g10008' => 'ugi', 'unitig_26.g9192' => 'ugi', 'vmacro14547' => 'vma', 'vmacro15333' => 'vma', 'vmacro18743' => 'vma', 'vmacro20166' => 'vma', 'VMungo0331G0523' => 'vmu', 'VMungo0331G1202' => 'vmu', 'VMungo0720G1228' => 'vmu', 'VMungo0720G1514' => 'vmu', 'VMungo1080G0169' => 'vmu', 'VMungo1127G1475' => 'vmu', 'VMungo1383G1208' => 'vmu', 'VMungo1383G1698' => 'vmu', 'Zm00001eb012270' => 'zma', 'Zm00001eb054100' => 'zma', 'Zm00001eb063350' => 'zma', 'Zm00001eb328560' => 'zma', 'Zm00001eb342820' => 'zma', 'Zm00001eb362210' => 'zma', 'Zm00001eb397730' => 'zma', 'Zm00001eb399750' => 'zma' ) $gf_id = 'HOM05D000959' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000959' ) $data_identifier = 'HOM05D000959' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 5, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 5, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 10, 'mbi' => (int) 3, 'mco' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 2, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 3, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 11, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399750' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''
include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000959', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '622', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p07100' => 'bna', 'A03p11720' => 'bna', 'A05p08300' => 'bna', 'A05p13380' => 'bna', 'A09p54130' => 'bna', 'A10p16690' => 'bna', 'A10p16700' => 'bna', 'A10p33390' => 'bna', 'Aa31LG10G16020' => 'aar', 'Aa31LG1G11810' => 'aar', 'Aa31LG1G11830' => 'aar', 'Aa31LG1G22510' => 'aar', 'Aa31LG5G4890' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5793' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2310' => 'aag', 'Actinidia08499' => 'ach', 'Actinidia11262' => 'ach', 'Actinidia23926' => 'ach', 'Actinidia34420' => 'ach', 'Actinidia36970' => 'ach', 'Ah.02g111220' => 'amhyb', 'Ah.15g097750' => 'amhyb', 'AL4G27500' => 'aly', 'AL6G11470' => 'aly', 'AL8G35950' => 'aly', 'AL8G35960' => 'aly', 'AL8G35970' => 'aly', 'Aqoxy1G00912' => 'aox', 'Aqoxy2G02253' => 'aox', 'Aqoxy2G02411' => 'aox', 'Aqoxy5G00485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BZ66YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K8ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM4FUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6BF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HFV7XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25JBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0YNNV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MAKK6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P70IT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP2Z6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V61LZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YWP64R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3S9AI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7PGHH' => 'arhy', 'AT2G32150' => 'ath', 'AT3G62040' => 'ath', 'AT5G02230' => 'ath', 'AT5G59480' => 'ath', 'AT5G59490' => 'ath', 'ATR0332G060' => 'atr', 'ATR0559G190' => 'atr', 'ATR0693G294' => 'atr', 'Atru.chr3.3975' => 'acertr', 'Atru.chr3.3976' => 'acertr', 'Atru.chr3.3977' => 'acertr', 'Atru.chr4.2498' => 'acertr', 'Atru.chr5.838' => 'acertr', 'Atru.chr8.1990' => 'acertr', 'Atru.chr8.1991' => 'acertr', 'Atru.chr8.1992' => 'acertr', 'AUR62001759' => 'cqu', 'AUR62009545' => 'cqu', 'AUR62010474' => 'cqu', 'AUR62025820' => 'cqu', 'AUR62030422' => 'cqu', 'AUR62033605' => 'cqu', 'AUR62038615' => 'cqu', 'AUR62041347' => 'cqu', 'BcaB01g04574' => 'bca', 'BcaB02g09263' => 'bca', 'BcaB02g10453' => 'bca', 'BcaB05g22513' => 'bca', 'BcaB08g36253' => 'bca', 'BcaB08g36254' => 'bca', 'BcaC01g06519' => 'bca', 'BcaC02g11889' => 'bca', 'BcaC03g14010' => 'bca', 'BcaC03g18439' => 'bca', 'BcaC04g19765' => 'bca', 'BcaC09g48432' => 'bca', 'BcaNung07302' => 'bca', 'BolC2t06040H' => 'bol', 'BolC2t07346H' => 'bol', 'BolC3t13817H' => 'bol', 'BolC4t22625H' => 'bol', 'BolC4t23297H' => 'bol', 'BolC8t51278H' => 'bol', 'BolC9t58050H' => 'bol', 'BolC9t58051H' => 'bol', 'BolC9t60163H' => 'bol', 'BraA02t04712Z' => 'bra', 'BraA02t05791Z' => 'bra', 'BraA03t10483Z' => 'bra', 'BraA05t19795Z' => 'bra', 'BraA05t20276Z' => 'bra', 'BraA09t40827Z' => 'bra', 'BraA10t43750Z' => 'bra', 'BraA10t43751Z' => 'bra', 'BraA10t45370Z' => 'bra', 'C02p00400' => 'bna', 'C02p12460' => 'bna', 'C03p13680' => 'bna', 'C04p10270' => 'bna', 'C04p17500' => 'bna', 'C08p37010' => 'bna', 'C09p51880' => 'bna', 'C09p51890' => 'bna', 'C09p74300' => 'bna', 'CAN.G179.26' => 'can', 'CAN.G3384.1' => 'can', 'CAN.G394.68' => 'can', 'CAN.G907.13' => 'can', 'CANSAT11G0012' => 'cansat', 'CANSAT25G1586' => 'cansat', 'CANSAT35G0735' => 'cansat', 'CANSAT54G0556' => 'cansat', 'CANSAT64G0356' => 'cansat', 'CANSAT78G2042' => 'cansat', 'CARHR125920' => 'chi', 'CARHR131910' => 'chi', 'CARHR172390' => 'chi', 'CARHR211140' => 'chi', 'CARHR285850' => 'chi', 'CARHR285860' => 'chi', 'Carub.0004s1347' => 'cru', 'Carub.0004s1960' => 'cru', 'Carub.0005s2880' => 'cru', 'Carub.0006s0107' => 'cru', 'Carub.0008s2015' => 'cru', 'Carub.0008s2016' => 'cru', 'Carub.0008s2017' => 'cru', 'Ca_01315_v3' => 'car', 'Ca_05063_v3' => 'car', 'Ca_10231_v3' => 'car', 'Ca_10913_v3' => 'car', 'Ca_19156_v3' => 'car', 'Ca_23644_v3' => 'car', 'Ca_26735_v3' => 'car', 'Cc01_g13130' => 'ccan', 'Cc02_g21690' => 'ccan', 'Cc03_g03600' => 'ccan', 'Cc06_g02510' => 'ccan', 'CDE02G1265' => 'cde', 'CDE05G0415' => 'cde', 'CDE08G1082' => 'cde', 'Cfa005780' => 'cfa', 'Cfa011522' => 'cfa', 'Cfa011523' => 'cfa', 'Cfa015627' => 'cfa', 'Cfa017359' => 'cfa', 'Ciclev10005687m.g' => 'ccl', 'Ciclev10012173m.g' => 'ccl', 'Ciclev10021621m.g' => 'ccl', 'Ciclev10028968m.g' => 'ccl', 'Ciclev10029907m.g' => 'ccl', 'CiPaw.01G164800' => 'cil', 'CiPaw.07G083700' => 'cil', 'CiPaw.07G127000' => 'cil', 'CiPaw.07G136900' => 'cil', 'CiPaw.08G081700' => 'cil', 'CiPaw.09G194600' => 'cil', 'CiPaw.10G146500' => 'cil', 'CiPaw.13G091500' => 'cil', 'CiPaw.13G091600' => 'cil', 'ClCG00G003390' => 'cla', 'ClCG01G007220' => 'cla', 'ClCG03G001370' => 'cla', 'ClCG04G008100' => 'cla', 'ClCG06G006110' => 'cla', 'ClCG06G006130' => 'cla', 'ClCG10G021210' => 'cla', 'COL.COLO4_07648' => 'col', 'COL.COLO4_07650' => 'col', 'COL.COLO4_07651' => 'col', 'COL.COLO4_14780' => 'col', 'COL.COLO4_18546' => 'col', 'COL.COLO4_18547' => 'col', 'COL.COLO4_23103' => 'col', 'COL.COLO4_30419' => 'col', 'COL.COLO4_34232' => 'col', 'Cpa.g.sc169.20' => 'cpa', 'Cpa.g.sc57.45' => 'cpa', 'Cpa.g.sc58.124' => 'cpa', 'Cpa.g.sc58.125' => 'cpa', 'Cpa.g.sc81.118' => 'cpa', 'Cpa.g.sc81.119' => 'cpa', 'Cre12.g524700' => 'cre', 'CsaV3_1G034430' => 'csa', 'CsaV3_1G034440' => 'csa', 'CsaV3_1G034450' => 'csa', 'CsaV3_3G034830' => 'csa', 'CsaV3_4G025090' => 'csa', 'CsaV3_5G018660' => 'csa', 'CsaV3_6G038160' => 'csa', 'CSS0003447' => 'camsi', 'CSS0017840' => 'camsi', 'CSS0019260' => 'camsi', 'CSS0040375' => 'camsi', 'CSS0042533' => 'camsi', 'DCAR_005960' => 'dca', 'DCAR_012104' => 'dca', 'DCAR_012105' => 'dca', 'DCAR_012293' => 'dca', 'DCAR_015632' => 'dca', 'DCAR_024602' => 'dca', 'DCAR_028752' => 'dca', 'Dinv06261' => 'din', 'Dinv13982' => 'din', 'Dinv17029' => 'din', 'Dinv18463' => 'din', 'Dinv33181' => 'din', 'Dinv35585' => 'din', 'Dinv37161' => 'din', 'Dinv42977' => 'din', 'Dinv43122' => 'din', 'Dinv44517' => 'din', 'Duzib093G0256' => 'dzi', 'Duzib106G1254' => 'dzi', 'Duzib128G1789' => 'dzi', 'Duzib133G0633' => 'dzi', 'Duzib138G0510' => 'dzi', 'Duzib150G1084' => 'dzi', 'Duzib168G0488' => 'dzi', 'Duzib168G1523' => 'dzi', 'Duzib170G0133' => 'dzi', 'ECA234G1433' => 'eca', 'ECA236G1432' => 'eca', 'ECA236G2256' => 'eca', 'ECA236G2365' => 'eca', 'ECA236G4830' => 'eca', 'ECA248G1505' => 'eca', 'EL10Ac3g06431' => 'bvu', 'EL10Ac5g12577' => 'bvu', 'EL10Ac6g13533' => 'bvu', 'EL10Ac7g16045' => 'bvu', 'Eucgr.A01281' => 'egr', 'Eucgr.B02326' => 'egr', 'Eucgr.H03532' => 'egr', 'Eucgr.K00553' => 'egr', 'Eucgr.K03116' => 'egr', 'FAN02G3963' => 'fan', 'FAN05G0438' => 'fan', 'FAN09G2434' => 'fan', 'FAN12G3984' => 'fan', 'FAN14G0798' => 'fan', 'FAN17G0652' => 'fan', 'FAN19G1988' => 'fan', 'FAN22G0632' => 'fan', 'FAN23G0387' => 'fan', 'FAN26G1323' => 'fan', 'FAN28G0666' => 'fan', 'FvH4_1g26080' => 'fve', 'FvH4_3g36780' => 'fve', 'FvH4_4g15270' => 'fve', 'FvH4_6g13490' => 'fve', 'Glyma.01G098700' => 'gma', 'Glyma.03G065900' => 'gma', 'Glyma.03G073754' => 'gma', 'Glyma.03G073758' => 'gma', 'Glyma.03G083200' => 'gma', 'Glyma.03G225500' => 'gma', 'Glyma.05G037766' => 'gma', 'Glyma.07G133500' => 'gma', 'Glyma.10G139400' => 'gma', 'Glyma.10G248900' => 'gma', 'Glyma.11G137800' => 'gma', 'Glyma.12G061300' => 'gma', 'Glyma.13G337900' => 'gma', 'Glyma.15G036600' => 'gma', 'Glyma.18G182800' => 'gma', 'Glyma.19G222500' => 'gma', 'Glyma.20G144800' => 'gma', 'Gohir.A01G222000' => 'ghi', 'Gohir.A03G044000' => 'ghi', 'Gohir.A03G044100' => 'ghi', 'Gohir.A04G083100' => 'ghi', 'Gohir.A07G127200' => 'ghi', 'Gohir.A07G132400' => 'ghi', 'Gohir.A08G000700' => 'ghi', 'Gohir.A11G327300' => 'ghi', 'Gohir.D01G211500' => 'ghi', 'Gohir.D03G123400' => 'ghi', 'Gohir.D03G123500' => 'ghi', 'Gohir.D04G121800' => 'ghi', 'Gohir.D07G131500' => 'ghi', 'Gohir.D07G136600' => 'ghi', 'Gohir.D08G011600' => 'ghi', 'Gohir.D11G346200' => 'ghi', 'Gorai.001G142800' => 'gra', 'Gorai.001G148700' => 'gra', 'Gorai.002G257300' => 'gra', 'Gorai.003G130000' => 'gra', 'Gorai.003G130100' => 'gra', 'Gorai.004G005300' => 'gra', 'Gorai.007G376500' => 'gra', 'Gorai.012G104700' => 'gra', 'GSVIVG01017946001' => 'vvi', 'GSVIVG01024928001' => 'vvi', 'GSVIVG01028227001' => 'vvi', 'GSVIVG01034151001' => 'vvi', 'HanXRQChr05g0135031' => 'han', 'HanXRQChr05g0135041' => 'han', 'HanXRQChr05g0140021' => 'han', 'HanXRQChr06g0178981' => 'han', 'HanXRQChr07g0188251' => 'han', 'HanXRQChr08g0235311' => 'han', 'HanXRQChr09g0271011' => 'han', 'HanXRQChr10g0293321' => 'han', 'HanXRQChr13g0388171' => 'han', 'Haze_00916' => 'cav', 'Haze_05063' => 'cav', 'Haze_20814' => 'cav', 'Haze_24128' => 'cav', 'Hma1.2p1_0745F.1_g212010' => 'hma', 'Hma1.2p1_0757F.1_g213260' => 'hma', 'Hma1.2p1_0936F.1_g238840' => 'hma', 'Hma1.2p1_1735F.1_g299890' => 'hma', 'Hma1.2p1_1861F.1_g305685' => 'hma', 'HPP92_003397' => 'vpl', 'HPP92_012597' => 'vpl', 'HPP92_015520' => 'vpl', 'HPP92_015539' => 'vpl', 'HPP92_020373' => 'vpl', 'Hund04938' => 'sun', 'Hund10677' => 'sun', 'Hund11033' => 'sun', 'Hund12155' => 'sun', 'Lalb_Chr01g0022551' => 'lal', 'Lalb_Chr03g0042341' => 'lal', 'Lalb_Chr07g0192931' => 'lal', 'Lalb_Chr12g0209551' => 'lal', 'Lalb_Chr19g0125251' => 'lal', 'Lalb_Chr19g0137891' => 'lal', 'Lalb_Chr21g0304641' => 'lal', 'Lalb_Chr21g0309881' => 'lal', 'Lj1A5T12' => 'lonja', 'Lj1C148G10' => 'lonja', 'Lj2A93T83' => 'lonja', 'Lj3A738G68' => 'lonja', 'Lj3C966T1' => 'lonja', 'Lj3g0018958' => 'lja', 'Lj3g0021831' => 'lja', 'Lj3g0025443' => 'lja', 'Lj4g0026809' => 'lja', 'Lj5g0012558' => 'lja', 'Lj5g0021586' => 'lja', 'Lsat_1_v5_gn_5_156840' => 'lsa', 'Lsat_1_v5_gn_8_73460' => 'lsa', 'Lsat_1_v5_gn_8_73481' => 'lsa', 'Lsat_1_v5_gn_9_31601' => 'lsa', 'Lsat_1_v5_gn_9_77320' => 'lsa', 'Manes.01G171300' => 'mes', 'Manes.01G171400' => 'mes', 'Manes.01G236100' => 'mes', 'Manes.02G130500' => 'mes', 'Manes.02G130600' => 'mes', 'Manes.03G180200' => 'mes', 'Manes.05G007000' => 'mes', 'Manes.08G084400' => 'mes', 'Manes.09G092600' => 'mes', 'Manes.15G027900' => 'mes', 'MBI04_g40948_MAGBIO' => 'mbi', 'MBI14_g12123_MAGBIO' => 'mbi', 'MBI18_g28915_MAGBIO' => 'mbi', 'MCO09G053' => 'mco', 'MCO11G782' => 'mco', 'MCO15G215' => 'mco', 'MD03G1088500' => 'mdo', 'MD03G1088600' => 'mdo', 'MD04G1130800' => 'mdo', 'MD09G1291700' => 'mdo', 'MD11G1097500' => 'mdo', 'MD11G1097600' => 'mdo', 'MD12G1143900' => 'mdo', 'MD13G1191400' => 'mdo', 'MD16G1191500' => 'mdo', 'Medtr1g085570' => 'mtr', 'Medtr1g104610' => 'mtr', 'Medtr2g097520' => 'mtr', 'Medtr4g021800' => 'mtr', 'Medtr4g021825' => 'mtr', 'Medtr4g064270' => 'mtr', 'Medtr4g064380' => 'mtr', 'Medtr7g062150' => 'mtr', 'MELO3C003138.2' => 'cme', 'MELO3C005187.2' => 'cme', 'MELO3C009252.2' => 'cme', 'MELO3C014481.2' => 'cme', 'MELO3C020616.2' => 'cme', 'MELO3C020617.2' => 'cme', 'MELO3C020618.2' => 'cme', 'Migut.G00328' => 'egut', 'Migut.J00320' => 'egut', 'Migut.L01000' => 'egut', 'Migut.L01953' => 'egut', 'MSTRG.10253' => 'ama', 'MSTRG.19077' => 'ama', 'MSTRG.26780' => 'ama', 'MSTRG.4023' => 'ama', 'MSTRG.5655' => 'ama', 'MSTRG.9992' => 'ama', 'Nitab4.5_0000043g0310' => 'nta', 'Nitab4.5_0000463g0080' => 'nta', 'Nitab4.5_0000705g0170' => 'nta', 'Nitab4.5_0001326g0060' => 'nta', 'Nitab4.5_0001628g0030' => 'nta', 'Nitab4.5_0002103g0110' => 'nta', 'Nitab4.5_0002946g0030' => 'nta', 'Nitab4.5_0004639g0030' => 'nta', 'Nn2g11149' => 'nnu', 'Nn2g13389' => 'nnu', 'Nn4g25326' => 'nnu', 'Nn4g26290' => 'nnu', 'Nn5g29865' => 'nnu', 'Oeu004163.1' => 'oeu', 'Oeu006901.1' => 'oeu', 'Oeu010096.1' => 'oeu', 'Oeu024340.1' => 'oeu', 'Oeu048369.1' => 'oeu', 'Os01g0973000' => 'osa', 'Os03g0273800' => 'osa', 'Os03g0701200' => 'osa', 'Os03g0834050' => 'osa', 'Os07g0634400' => 'osa', 'Peaxi162Scf00092g01414' => 'pax', 'Peaxi162Scf00165g00818' => 'pax', 'Peaxi162Scf00309g00516' => 'pax', 'Peaxi162Scf00774g00218' => 'pax', 'PGR004G1824' => 'pgr', 'PGR004G2606' => 'pgr', 'PGR031G2716' => 'pgr', 'PGR102G2460' => 'pgr', 'PGR142G2599' => 'pgr', 'PGSC0003DMG400000843' => 'stu', 'PGSC0003DMG400008829' => 'stu', 'PGSC0003DMG400030418' => 'stu', 'PGSC0003DMG400031834' => 'stu', 'PGSC0003DMG401028300' => 'stu', 'PGSC0003DMG402028300' => 'stu', 'Phvul.001G219300' => 'pvu', 'Phvul.007G056000' => 'pvu', 'Phvul.007G208000' => 'pvu', 'Phvul.008G119500' => 'pvu', 'Phvul.010G011200' => 'pvu', 'Phvul.010G014800' => 'pvu', 'Phvul.011G062900' => 'pvu', 'Phvul.L007043' => 'pvu', 'Potri.001G242300' => 'ptr', 'Potri.002G185300' => 'ptr', 'Potri.006G086900' => 'ptr', 'Potri.008G151700' => 'ptr', 'Potri.009G033500' => 'ptr', 'Potri.010G089300' => 'ptr', 'Potri.014G110800' => 'ptr', 'Pp3c27_8130' => 'ppa', 'Pp3c6_27410' => 'ppa', 'PRCOL_00001659' => 'pco', 'PRCOL_00001927' => 'pco', 'PRCOL_00003649' => 'pco', 'Prupe.1G011600' => 'ppe', 'Prupe.3G000800' => 'ppe', 'Prupe.3G001100' => 'ppe', 'Prupe.6G072700' => 'ppe', 'Prupe.6G072800' => 'ppe', 'Prupe.6G257300' => 'ppe', 'Prupe.8G033000' => 'ppe', 'Psat0s2633g0080' => 'psa', 'Psat0s3396g0080' => 'psa', 'Psat0s3396g0200' => 'psa', 'Psat3g139080' => 'psa', 'Psat5g285080' => 'psa', 'Psat6g157760' => 'psa', 'Psat6g208440' => 'psa', 'Psat7g215320' => 'psa', 'Psat7g215400' => 'psa', 'Psat7g235600' => 'psa', 'Psat7g235760' => 'psa', 'PSO063G4603' => 'pso', 'PSO210G0182' => 'pso', 'PSO210G0196' => 'pso', 'PSO339G0394' => 'pso', 'PSO339G4127' => 'pso', 'PSO513G0064' => 'pso', 'PSO761G0079' => 'pso', 'QL01p031003' => 'qlo', 'QL01p031078' => 'qlo', 'QL06p003004' => 'qlo', 'QL07p048731' => 'qlo', 'QL09p037427' => 'qlo', 'RcHm_v2.0_Chr3g0466361' => 'rch', 'RcHm_v2.0_Chr3g0485571' => 'rch', 'RcHm_v2.0_Chr4g0416551' => 'rch', 'RcHm_v2.0_Chr5g0065831' => 'rch', 'Rhsim01G0230500' => 'rsi', 'Rhsim05G0194000' => 'rsi', 'Rhsim08G0250400' => 'rsi', 'Sabra02G0131000' => 'sbr', 'Sabra06G0066300' => 'sbr', 'Sabra08G0115500' => 'sbr', 'Sabra09G0023900' => 'sbr', 'Sabra10G0054000' => 'sbr', 'Sabra14G0081500' => 'sbr', 'Sabra16G0147100' => 'sbr', 'SalBow2G2957' => 'sbo', 'SalBow4G3320' => 'sbo', 'SalBow8G1894' => 'sbo', 'Sc07g0007950' => 'sci', 'Sc12g0001360' => 'sci', 'Sc13g0004330' => 'sci', 'Sc20g0005010' => 'sci', 'Sed0000361' => 'sed', 'Sed0001706' => 'sed', 'Sed0002422' => 'sed', 'Sed0004029' => 'sed', 'Sed0004602' => 'sed', 'Sed0004943' => 'sed', 'Sed0008646' => 'sed', 'Sed0023313' => 'sed', 'Sed0024843' => 'sed', 'SEGI_00081' => 'sgi', 'SEGI_00947' => 'sgi', 'SEGI_04046' => 'sgi', 'SEGI_06880' => 'sgi', 'SEGI_09736' => 'sgi', 'SEGI_12741' => 'sgi', 'SEGI_14530' => 'sgi', 'SEGI_20705' => 'sgi', 'SEGI_26088' => 'sgi', 'SEGI_28323' => 'sgi', 'SEGI_33343' => 'sgi', 'SGA_v2.0_scaffold126G33775' => 'sas', 'SGA_v2.0_scaffold2G01337' => 'sas', 'SGA_v2.0_scaffold38G15006' => 'sas', 'SGA_v2.0_scaffold39G15264' => 'sas', 'SGA_v2.0_scaffold453G51880' => 'sas', 'SHI12696' => 'shi', 'SMO367G1096' => 'smo', 'Solyc01g068630.3' => 'sly', 'Solyc05g011880.3' => 'sly', 'Solyc06g076300.3' => 'sly', 'Solyc09g010940.4' => 'sly', 'Solyc09g075890.3' => 'sly', 'Sopen01g030560' => 'spe', 'Sopen05g006630' => 'spe', 'Sopen06g032720' => 'spe', 'Sopen09g005660' => 'spe', 'Sopen09g030690' => 'spe', 'Sp4g14540' => 'spa', 'Sp4g20030' => 'spa', 'Sp5g01320' => 'spa', 'Sp6g21170' => 'spa', 'Sp6g21180' => 'spa', 'Sp6g21190' => 'spa', 'Sp6g40220' => 'spa', 'TAR362G0122' => 'tar', 'TAR362G1338' => 'tar', 'TAR369G0590' => 'tar', 'TAR371G0824' => 'tar', 'TAR622G1429' => 'tar', 'TAR623G0734' => 'tar', 'TAR625G0441' => 'tar', 'TAR629G0976' => 'tar', 'TAR633G1195' => 'tar', 'TAR636G2660' => 'tar', 'THA.LOC104799440' => 'tha', 'THA.LOC104800966' => 'tha', 'THA.LOC104806559' => 'tha', 'THA.LOC104810765' => 'tha', 'THA.LOC104816266' => 'tha', 'THA.LOC104817419' => 'tha', 'THA.LOC104827021' => 'tha', 'Thecc.01G327400' => 'tca', 'Thecc.04G229200' => 'tca', 'Thecc.05G037400' => 'tca', 'Thecc.09G318600' => 'tca', 'Thecc.09G318700' => 'tca', 'Thhalv10006238m.g' => 'esa', 'Thhalv10014321m.g' => 'esa', 'Thhalv10014335m.g' => 'esa', 'Thhalv10015826m.g' => 'esa', 'Thhalv10017107m.g' => 'esa', 'Thhalv10017180m.g' => 'esa', 'Thhalv10029339m.g' => 'esa', 'TPR.G1699' => 'tpr', 'TPR.G23609' => 'tpr', 'TPR.G3081' => 'tpr', 'TPR.G40397' => 'tpr', 'TPR.G5522' => 'tpr', 'TPR.G5618' => 'tpr', 'TPR.G5626' => 'tpr', 'TWI09G1632' => 'twi', 'TWI23G1230' => 'twi', 'TWI53G1064' => 'twi', 'TWI59G0751' => 'twi', 'TWI74G0947' => 'twi', 'TWI77G0337' => 'twi', 'TWI79G1254' => 'twi', 'unitig_0.g2341' => 'ugi', 'unitig_26.g10006' => 'ugi', 'unitig_26.g10008' => 'ugi', 'unitig_26.g9192' => 'ugi', 'vmacro14547' => 'vma', 'vmacro15333' => 'vma', 'vmacro18743' => 'vma', 'vmacro20166' => 'vma', 'VMungo0331G0523' => 'vmu', 'VMungo0331G1202' => 'vmu', 'VMungo0720G1228' => 'vmu', 'VMungo0720G1514' => 'vmu', 'VMungo1080G0169' => 'vmu', 'VMungo1127G1475' => 'vmu', 'VMungo1383G1208' => 'vmu', 'VMungo1383G1698' => 'vmu', 'Zm00001eb012270' => 'zma', 'Zm00001eb054100' => 'zma', 'Zm00001eb063350' => 'zma', 'Zm00001eb328560' => 'zma', 'Zm00001eb342820' => 'zma', 'Zm00001eb362210' => 'zma', 'Zm00001eb397730' => 'zma', 'Zm00001eb399750' => 'zma' ), 'gf_id' => 'HOM05D000959', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000959' ), 'data_identifier' => 'HOM05D000959', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000959', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '622', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p07100' => 'bna', 'A03p11720' => 'bna', 'A05p08300' => 'bna', 'A05p13380' => 'bna', 'A09p54130' => 'bna', 'A10p16690' => 'bna', 'A10p16700' => 'bna', 'A10p33390' => 'bna', 'Aa31LG10G16020' => 'aar', 'Aa31LG1G11810' => 'aar', 'Aa31LG1G11830' => 'aar', 'Aa31LG1G22510' => 'aar', 'Aa31LG5G4890' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5793' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2310' => 'aag', 'Actinidia08499' => 'ach', 'Actinidia11262' => 'ach', 'Actinidia23926' => 'ach', 'Actinidia34420' => 'ach', 'Actinidia36970' => 'ach', 'Ah.02g111220' => 'amhyb', 'Ah.15g097750' => 'amhyb', 'AL4G27500' => 'aly', 'AL6G11470' => 'aly', 'AL8G35950' => 'aly', 'AL8G35960' => 'aly', 'AL8G35970' => 'aly', 'Aqoxy1G00912' => 'aox', 'Aqoxy2G02253' => 'aox', 'Aqoxy2G02411' => 'aox', 'Aqoxy5G00485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BZ66YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K8ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM4FUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6BF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HFV7XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25JBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0YNNV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MAKK6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P70IT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP2Z6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V61LZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YWP64R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3S9AI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7PGHH' => 'arhy', 'AT2G32150' => 'ath', 'AT3G62040' => 'ath', 'AT5G02230' => 'ath', 'AT5G59480' => 'ath', 'AT5G59490' => 'ath', 'ATR0332G060' => 'atr', 'ATR0559G190' => 'atr', 'ATR0693G294' => 'atr', 'Atru.chr3.3975' => 'acertr', 'Atru.chr3.3976' => 'acertr', 'Atru.chr3.3977' => 'acertr', 'Atru.chr4.2498' => 'acertr', 'Atru.chr5.838' => 'acertr', 'Atru.chr8.1990' => 'acertr', 'Atru.chr8.1991' => 'acertr', 'Atru.chr8.1992' => 'acertr', 'AUR62001759' => 'cqu', 'AUR62009545' => 'cqu', 'AUR62010474' => 'cqu', 'AUR62025820' => 'cqu', 'AUR62030422' => 'cqu', 'AUR62033605' => 'cqu', 'AUR62038615' => 'cqu', 'AUR62041347' => 'cqu', 'BcaB01g04574' => 'bca', 'BcaB02g09263' => 'bca', 'BcaB02g10453' => 'bca', 'BcaB05g22513' => 'bca', 'BcaB08g36253' => 'bca', 'BcaB08g36254' => 'bca', 'BcaC01g06519' => 'bca', 'BcaC02g11889' => 'bca', 'BcaC03g14010' => 'bca', 'BcaC03g18439' => 'bca', 'BcaC04g19765' => 'bca', 'BcaC09g48432' => 'bca', 'BcaNung07302' => 'bca', 'BolC2t06040H' => 'bol', 'BolC2t07346H' => 'bol', 'BolC3t13817H' => 'bol', 'BolC4t22625H' => 'bol', 'BolC4t23297H' => 'bol', 'BolC8t51278H' => 'bol', 'BolC9t58050H' => 'bol', 'BolC9t58051H' => 'bol', 'BolC9t60163H' => 'bol', 'BraA02t04712Z' => 'bra', 'BraA02t05791Z' => 'bra', 'BraA03t10483Z' => 'bra', 'BraA05t19795Z' => 'bra', 'BraA05t20276Z' => 'bra', 'BraA09t40827Z' => 'bra', 'BraA10t43750Z' => 'bra', 'BraA10t43751Z' => 'bra', 'BraA10t45370Z' => 'bra', 'C02p00400' => 'bna', 'C02p12460' => 'bna', 'C03p13680' => 'bna', 'C04p10270' => 'bna', 'C04p17500' => 'bna', 'C08p37010' => 'bna', 'C09p51880' => 'bna', 'C09p51890' => 'bna', 'C09p74300' => 'bna', 'CAN.G179.26' => 'can', 'CAN.G3384.1' => 'can', 'CAN.G394.68' => 'can', 'CAN.G907.13' => 'can', 'CANSAT11G0012' => 'cansat', 'CANSAT25G1586' => 'cansat', 'CANSAT35G0735' => 'cansat', 'CANSAT54G0556' => 'cansat', 'CANSAT64G0356' => 'cansat', 'CANSAT78G2042' => 'cansat', 'CARHR125920' => 'chi', 'CARHR131910' => 'chi', 'CARHR172390' => 'chi', 'CARHR211140' => 'chi', 'CARHR285850' => 'chi', 'CARHR285860' => 'chi', 'Carub.0004s1347' => 'cru', 'Carub.0004s1960' => 'cru', 'Carub.0005s2880' => 'cru', 'Carub.0006s0107' => 'cru', 'Carub.0008s2015' => 'cru', 'Carub.0008s2016' => 'cru', 'Carub.0008s2017' => 'cru', 'Ca_01315_v3' => 'car', 'Ca_05063_v3' => 'car', 'Ca_10231_v3' => 'car', 'Ca_10913_v3' => 'car', 'Ca_19156_v3' => 'car', 'Ca_23644_v3' => 'car', 'Ca_26735_v3' => 'car', 'Cc01_g13130' => 'ccan', 'Cc02_g21690' => 'ccan', 'Cc03_g03600' => 'ccan', 'Cc06_g02510' => 'ccan', 'CDE02G1265' => 'cde', 'CDE05G0415' => 'cde', 'CDE08G1082' => 'cde', 'Cfa005780' => 'cfa', 'Cfa011522' => 'cfa', 'Cfa011523' => 'cfa', 'Cfa015627' => 'cfa', 'Cfa017359' => 'cfa', 'Ciclev10005687m.g' => 'ccl', 'Ciclev10012173m.g' => 'ccl', 'Ciclev10021621m.g' => 'ccl', 'Ciclev10028968m.g' => 'ccl', 'Ciclev10029907m.g' => 'ccl', 'CiPaw.01G164800' => 'cil', 'CiPaw.07G083700' => 'cil', 'CiPaw.07G127000' => 'cil', 'CiPaw.07G136900' => 'cil', 'CiPaw.08G081700' => 'cil', 'CiPaw.09G194600' => 'cil', 'CiPaw.10G146500' => 'cil', 'CiPaw.13G091500' => 'cil', 'CiPaw.13G091600' => 'cil', 'ClCG00G003390' => 'cla', 'ClCG01G007220' => 'cla', 'ClCG03G001370' => 'cla', 'ClCG04G008100' => 'cla', 'ClCG06G006110' => 'cla', 'ClCG06G006130' => 'cla', 'ClCG10G021210' => 'cla', 'COL.COLO4_07648' => 'col', 'COL.COLO4_07650' => 'col', 'COL.COLO4_07651' => 'col', 'COL.COLO4_14780' => 'col', 'COL.COLO4_18546' => 'col', 'COL.COLO4_18547' => 'col', 'COL.COLO4_23103' => 'col', 'COL.COLO4_30419' => 'col', 'COL.COLO4_34232' => 'col', 'Cpa.g.sc169.20' => 'cpa', 'Cpa.g.sc57.45' => 'cpa', 'Cpa.g.sc58.124' => 'cpa', 'Cpa.g.sc58.125' => 'cpa', 'Cpa.g.sc81.118' => 'cpa', 'Cpa.g.sc81.119' => 'cpa', 'Cre12.g524700' => 'cre', 'CsaV3_1G034430' => 'csa', 'CsaV3_1G034440' => 'csa', 'CsaV3_1G034450' => 'csa', 'CsaV3_3G034830' => 'csa', 'CsaV3_4G025090' => 'csa', 'CsaV3_5G018660' => 'csa', 'CsaV3_6G038160' => 'csa', 'CSS0003447' => 'camsi', 'CSS0017840' => 'camsi', 'CSS0019260' => 'camsi', 'CSS0040375' => 'camsi', 'CSS0042533' => 'camsi', 'DCAR_005960' => 'dca', 'DCAR_012104' => 'dca', 'DCAR_012105' => 'dca', 'DCAR_012293' => 'dca', 'DCAR_015632' => 'dca', 'DCAR_024602' => 'dca', 'DCAR_028752' => 'dca', 'Dinv06261' => 'din', 'Dinv13982' => 'din', 'Dinv17029' => 'din', 'Dinv18463' => 'din', 'Dinv33181' => 'din', 'Dinv35585' => 'din', 'Dinv37161' => 'din', 'Dinv42977' => 'din', 'Dinv43122' => 'din', 'Dinv44517' => 'din', 'Duzib093G0256' => 'dzi', 'Duzib106G1254' => 'dzi', 'Duzib128G1789' => 'dzi', 'Duzib133G0633' => 'dzi', 'Duzib138G0510' => 'dzi', 'Duzib150G1084' => 'dzi', 'Duzib168G0488' => 'dzi', 'Duzib168G1523' => 'dzi', 'Duzib170G0133' => 'dzi', 'ECA234G1433' => 'eca', 'ECA236G1432' => 'eca', 'ECA236G2256' => 'eca', 'ECA236G2365' => 'eca', 'ECA236G4830' => 'eca', 'ECA248G1505' => 'eca', 'EL10Ac3g06431' => 'bvu', 'EL10Ac5g12577' => 'bvu', 'EL10Ac6g13533' => 'bvu', 'EL10Ac7g16045' => 'bvu', 'Eucgr.A01281' => 'egr', 'Eucgr.B02326' => 'egr', 'Eucgr.H03532' => 'egr', 'Eucgr.K00553' => 'egr', 'Eucgr.K03116' => 'egr', 'FAN02G3963' => 'fan', 'FAN05G0438' => 'fan', 'FAN09G2434' => 'fan', 'FAN12G3984' => 'fan', 'FAN14G0798' => 'fan', 'FAN17G0652' => 'fan', 'FAN19G1988' => 'fan', 'FAN22G0632' => 'fan', 'FAN23G0387' => 'fan', 'FAN26G1323' => 'fan', 'FAN28G0666' => 'fan', 'FvH4_1g26080' => 'fve', 'FvH4_3g36780' => 'fve', 'FvH4_4g15270' => 'fve', 'FvH4_6g13490' => 'fve', 'Glyma.01G098700' => 'gma', 'Glyma.03G065900' => 'gma', 'Glyma.03G073754' => 'gma', 'Glyma.03G073758' => 'gma', 'Glyma.03G083200' => 'gma', 'Glyma.03G225500' => 'gma', 'Glyma.05G037766' => 'gma', 'Glyma.07G133500' => 'gma', 'Glyma.10G139400' => 'gma', 'Glyma.10G248900' => 'gma', 'Glyma.11G137800' => 'gma', 'Glyma.12G061300' => 'gma', 'Glyma.13G337900' => 'gma', 'Glyma.15G036600' => 'gma', 'Glyma.18G182800' => 'gma', 'Glyma.19G222500' => 'gma', 'Glyma.20G144800' => 'gma', 'Gohir.A01G222000' => 'ghi', 'Gohir.A03G044000' => 'ghi', 'Gohir.A03G044100' => 'ghi', 'Gohir.A04G083100' => 'ghi', 'Gohir.A07G127200' => 'ghi', 'Gohir.A07G132400' => 'ghi', 'Gohir.A08G000700' => 'ghi', 'Gohir.A11G327300' => 'ghi', 'Gohir.D01G211500' => 'ghi', 'Gohir.D03G123400' => 'ghi', 'Gohir.D03G123500' => 'ghi', 'Gohir.D04G121800' => 'ghi', 'Gohir.D07G131500' => 'ghi', 'Gohir.D07G136600' => 'ghi', 'Gohir.D08G011600' => 'ghi', 'Gohir.D11G346200' => 'ghi', 'Gorai.001G142800' => 'gra', 'Gorai.001G148700' => 'gra', 'Gorai.002G257300' => 'gra', 'Gorai.003G130000' => 'gra', 'Gorai.003G130100' => 'gra', 'Gorai.004G005300' => 'gra', 'Gorai.007G376500' => 'gra', 'Gorai.012G104700' => 'gra', 'GSVIVG01017946001' => 'vvi', 'GSVIVG01024928001' => 'vvi', 'GSVIVG01028227001' => 'vvi', 'GSVIVG01034151001' => 'vvi', 'HanXRQChr05g0135031' => 'han', 'HanXRQChr05g0135041' => 'han', 'HanXRQChr05g0140021' => 'han', 'HanXRQChr06g0178981' => 'han', 'HanXRQChr07g0188251' => 'han', 'HanXRQChr08g0235311' => 'han', 'HanXRQChr09g0271011' => 'han', 'HanXRQChr10g0293321' => 'han', 'HanXRQChr13g0388171' => 'han', 'Haze_00916' => 'cav', 'Haze_05063' => 'cav', 'Haze_20814' => 'cav', 'Haze_24128' => 'cav', 'Hma1.2p1_0745F.1_g212010' => 'hma', 'Hma1.2p1_0757F.1_g213260' => 'hma', 'Hma1.2p1_0936F.1_g238840' => 'hma', 'Hma1.2p1_1735F.1_g299890' => 'hma', 'Hma1.2p1_1861F.1_g305685' => 'hma', 'HPP92_003397' => 'vpl', 'HPP92_012597' => 'vpl', 'HPP92_015520' => 'vpl', 'HPP92_015539' => 'vpl', 'HPP92_020373' => 'vpl', 'Hund04938' => 'sun', 'Hund10677' => 'sun', 'Hund11033' => 'sun', 'Hund12155' => 'sun', 'Lalb_Chr01g0022551' => 'lal', 'Lalb_Chr03g0042341' => 'lal', 'Lalb_Chr07g0192931' => 'lal', 'Lalb_Chr12g0209551' => 'lal', 'Lalb_Chr19g0125251' => 'lal', 'Lalb_Chr19g0137891' => 'lal', 'Lalb_Chr21g0304641' => 'lal', 'Lalb_Chr21g0309881' => 'lal', 'Lj1A5T12' => 'lonja', 'Lj1C148G10' => 'lonja', 'Lj2A93T83' => 'lonja', 'Lj3A738G68' => 'lonja', 'Lj3C966T1' => 'lonja', 'Lj3g0018958' => 'lja', 'Lj3g0021831' => 'lja', 'Lj3g0025443' => 'lja', 'Lj4g0026809' => 'lja', 'Lj5g0012558' => 'lja', 'Lj5g0021586' => 'lja', 'Lsat_1_v5_gn_5_156840' => 'lsa', 'Lsat_1_v5_gn_8_73460' => 'lsa', 'Lsat_1_v5_gn_8_73481' => 'lsa', 'Lsat_1_v5_gn_9_31601' => 'lsa', 'Lsat_1_v5_gn_9_77320' => 'lsa', 'Manes.01G171300' => 'mes', 'Manes.01G171400' => 'mes', 'Manes.01G236100' => 'mes', 'Manes.02G130500' => 'mes', 'Manes.02G130600' => 'mes', 'Manes.03G180200' => 'mes', 'Manes.05G007000' => 'mes', 'Manes.08G084400' => 'mes', 'Manes.09G092600' => 'mes', 'Manes.15G027900' => 'mes', 'MBI04_g40948_MAGBIO' => 'mbi', 'MBI14_g12123_MAGBIO' => 'mbi', 'MBI18_g28915_MAGBIO' => 'mbi', 'MCO09G053' => 'mco', 'MCO11G782' => 'mco', 'MCO15G215' => 'mco', 'MD03G1088500' => 'mdo', 'MD03G1088600' => 'mdo', 'MD04G1130800' => 'mdo', 'MD09G1291700' => 'mdo', 'MD11G1097500' => 'mdo', 'MD11G1097600' => 'mdo', 'MD12G1143900' => 'mdo', 'MD13G1191400' => 'mdo', 'MD16G1191500' => 'mdo', 'Medtr1g085570' => 'mtr', 'Medtr1g104610' => 'mtr', 'Medtr2g097520' => 'mtr', 'Medtr4g021800' => 'mtr', 'Medtr4g021825' => 'mtr', 'Medtr4g064270' => 'mtr', 'Medtr4g064380' => 'mtr', 'Medtr7g062150' => 'mtr', 'MELO3C003138.2' => 'cme', 'MELO3C005187.2' => 'cme', 'MELO3C009252.2' => 'cme', 'MELO3C014481.2' => 'cme', 'MELO3C020616.2' => 'cme', 'MELO3C020617.2' => 'cme', 'MELO3C020618.2' => 'cme', 'Migut.G00328' => 'egut', 'Migut.J00320' => 'egut', 'Migut.L01000' => 'egut', 'Migut.L01953' => 'egut', 'MSTRG.10253' => 'ama', 'MSTRG.19077' => 'ama', 'MSTRG.26780' => 'ama', 'MSTRG.4023' => 'ama', 'MSTRG.5655' => 'ama', 'MSTRG.9992' => 'ama', 'Nitab4.5_0000043g0310' => 'nta', 'Nitab4.5_0000463g0080' => 'nta', 'Nitab4.5_0000705g0170' => 'nta', 'Nitab4.5_0001326g0060' => 'nta', 'Nitab4.5_0001628g0030' => 'nta', 'Nitab4.5_0002103g0110' => 'nta', 'Nitab4.5_0002946g0030' => 'nta', 'Nitab4.5_0004639g0030' => 'nta', 'Nn2g11149' => 'nnu', 'Nn2g13389' => 'nnu', 'Nn4g25326' => 'nnu', 'Nn4g26290' => 'nnu', 'Nn5g29865' => 'nnu', 'Oeu004163.1' => 'oeu', 'Oeu006901.1' => 'oeu', 'Oeu010096.1' => 'oeu', 'Oeu024340.1' => 'oeu', 'Oeu048369.1' => 'oeu', 'Os01g0973000' => 'osa', 'Os03g0273800' => 'osa', 'Os03g0701200' => 'osa', 'Os03g0834050' => 'osa', 'Os07g0634400' => 'osa', 'Peaxi162Scf00092g01414' => 'pax', 'Peaxi162Scf00165g00818' => 'pax', 'Peaxi162Scf00309g00516' => 'pax', 'Peaxi162Scf00774g00218' => 'pax', 'PGR004G1824' => 'pgr', 'PGR004G2606' => 'pgr', 'PGR031G2716' => 'pgr', 'PGR102G2460' => 'pgr', 'PGR142G2599' => 'pgr', 'PGSC0003DMG400000843' => 'stu', 'PGSC0003DMG400008829' => 'stu', 'PGSC0003DMG400030418' => 'stu', 'PGSC0003DMG400031834' => 'stu', 'PGSC0003DMG401028300' => 'stu', 'PGSC0003DMG402028300' => 'stu', 'Phvul.001G219300' => 'pvu', 'Phvul.007G056000' => 'pvu', 'Phvul.007G208000' => 'pvu', 'Phvul.008G119500' => 'pvu', 'Phvul.010G011200' => 'pvu', 'Phvul.010G014800' => 'pvu', 'Phvul.011G062900' => 'pvu', 'Phvul.L007043' => 'pvu', 'Potri.001G242300' => 'ptr', 'Potri.002G185300' => 'ptr', 'Potri.006G086900' => 'ptr', 'Potri.008G151700' => 'ptr', 'Potri.009G033500' => 'ptr', 'Potri.010G089300' => 'ptr', 'Potri.014G110800' => 'ptr', 'Pp3c27_8130' => 'ppa', 'Pp3c6_27410' => 'ppa', 'PRCOL_00001659' => 'pco', 'PRCOL_00001927' => 'pco', 'PRCOL_00003649' => 'pco', 'Prupe.1G011600' => 'ppe', 'Prupe.3G000800' => 'ppe', 'Prupe.3G001100' => 'ppe', 'Prupe.6G072700' => 'ppe', 'Prupe.6G072800' => 'ppe', 'Prupe.6G257300' => 'ppe', 'Prupe.8G033000' => 'ppe', 'Psat0s2633g0080' => 'psa', 'Psat0s3396g0080' => 'psa', 'Psat0s3396g0200' => 'psa', 'Psat3g139080' => 'psa', 'Psat5g285080' => 'psa', 'Psat6g157760' => 'psa', 'Psat6g208440' => 'psa', 'Psat7g215320' => 'psa', 'Psat7g215400' => 'psa', 'Psat7g235600' => 'psa', 'Psat7g235760' => 'psa', 'PSO063G4603' => 'pso', 'PSO210G0182' => 'pso', 'PSO210G0196' => 'pso', 'PSO339G0394' => 'pso', 'PSO339G4127' => 'pso', 'PSO513G0064' => 'pso', 'PSO761G0079' => 'pso', 'QL01p031003' => 'qlo', 'QL01p031078' => 'qlo', 'QL06p003004' => 'qlo', 'QL07p048731' => 'qlo', 'QL09p037427' => 'qlo', 'RcHm_v2.0_Chr3g0466361' => 'rch', 'RcHm_v2.0_Chr3g0485571' => 'rch', 'RcHm_v2.0_Chr4g0416551' => 'rch', 'RcHm_v2.0_Chr5g0065831' => 'rch', 'Rhsim01G0230500' => 'rsi', 'Rhsim05G0194000' => 'rsi', 'Rhsim08G0250400' => 'rsi', 'Sabra02G0131000' => 'sbr', 'Sabra06G0066300' => 'sbr', 'Sabra08G0115500' => 'sbr', 'Sabra09G0023900' => 'sbr', 'Sabra10G0054000' => 'sbr', 'Sabra14G0081500' => 'sbr', 'Sabra16G0147100' => 'sbr', 'SalBow2G2957' => 'sbo', 'SalBow4G3320' => 'sbo', 'SalBow8G1894' => 'sbo', 'Sc07g0007950' => 'sci', 'Sc12g0001360' => 'sci', 'Sc13g0004330' => 'sci', 'Sc20g0005010' => 'sci', 'Sed0000361' => 'sed', 'Sed0001706' => 'sed', 'Sed0002422' => 'sed', 'Sed0004029' => 'sed', 'Sed0004602' => 'sed', 'Sed0004943' => 'sed', 'Sed0008646' => 'sed', 'Sed0023313' => 'sed', 'Sed0024843' => 'sed', 'SEGI_00081' => 'sgi', 'SEGI_00947' => 'sgi', 'SEGI_04046' => 'sgi', 'SEGI_06880' => 'sgi', 'SEGI_09736' => 'sgi', 'SEGI_12741' => 'sgi', 'SEGI_14530' => 'sgi', 'SEGI_20705' => 'sgi', 'SEGI_26088' => 'sgi', 'SEGI_28323' => 'sgi', 'SEGI_33343' => 'sgi', 'SGA_v2.0_scaffold126G33775' => 'sas', 'SGA_v2.0_scaffold2G01337' => 'sas', 'SGA_v2.0_scaffold38G15006' => 'sas', 'SGA_v2.0_scaffold39G15264' => 'sas', 'SGA_v2.0_scaffold453G51880' => 'sas', 'SHI12696' => 'shi', 'SMO367G1096' => 'smo', 'Solyc01g068630.3' => 'sly', 'Solyc05g011880.3' => 'sly', 'Solyc06g076300.3' => 'sly', 'Solyc09g010940.4' => 'sly', 'Solyc09g075890.3' => 'sly', 'Sopen01g030560' => 'spe', 'Sopen05g006630' => 'spe', 'Sopen06g032720' => 'spe', 'Sopen09g005660' => 'spe', 'Sopen09g030690' => 'spe', 'Sp4g14540' => 'spa', 'Sp4g20030' => 'spa', 'Sp5g01320' => 'spa', 'Sp6g21170' => 'spa', 'Sp6g21180' => 'spa', 'Sp6g21190' => 'spa', 'Sp6g40220' => 'spa', 'TAR362G0122' => 'tar', 'TAR362G1338' => 'tar', 'TAR369G0590' => 'tar', 'TAR371G0824' => 'tar', 'TAR622G1429' => 'tar', 'TAR623G0734' => 'tar', 'TAR625G0441' => 'tar', 'TAR629G0976' => 'tar', 'TAR633G1195' => 'tar', 'TAR636G2660' => 'tar', 'THA.LOC104799440' => 'tha', 'THA.LOC104800966' => 'tha', 'THA.LOC104806559' => 'tha', 'THA.LOC104810765' => 'tha', 'THA.LOC104816266' => 'tha', 'THA.LOC104817419' => 'tha', 'THA.LOC104827021' => 'tha', 'Thecc.01G327400' => 'tca', 'Thecc.04G229200' => 'tca', 'Thecc.05G037400' => 'tca', 'Thecc.09G318600' => 'tca', 'Thecc.09G318700' => 'tca', 'Thhalv10006238m.g' => 'esa', 'Thhalv10014321m.g' => 'esa', 'Thhalv10014335m.g' => 'esa', 'Thhalv10015826m.g' => 'esa', 'Thhalv10017107m.g' => 'esa', 'Thhalv10017180m.g' => 'esa', 'Thhalv10029339m.g' => 'esa', 'TPR.G1699' => 'tpr', 'TPR.G23609' => 'tpr', 'TPR.G3081' => 'tpr', 'TPR.G40397' => 'tpr', 'TPR.G5522' => 'tpr', 'TPR.G5618' => 'tpr', 'TPR.G5626' => 'tpr', 'TWI09G1632' => 'twi', 'TWI23G1230' => 'twi', 'TWI53G1064' => 'twi', 'TWI59G0751' => 'twi', 'TWI74G0947' => 'twi', 'TWI77G0337' => 'twi', 'TWI79G1254' => 'twi', 'unitig_0.g2341' => 'ugi', 'unitig_26.g10006' => 'ugi', 'unitig_26.g10008' => 'ugi', 'unitig_26.g9192' => 'ugi', 'vmacro14547' => 'vma', 'vmacro15333' => 'vma', 'vmacro18743' => 'vma', 'vmacro20166' => 'vma', 'VMungo0331G0523' => 'vmu', 'VMungo0331G1202' => 'vmu', 'VMungo0720G1228' => 'vmu', 'VMungo0720G1514' => 'vmu', 'VMungo1080G0169' => 'vmu', 'VMungo1127G1475' => 'vmu', 'VMungo1383G1208' => 'vmu', 'VMungo1383G1698' => 'vmu', 'Zm00001eb012270' => 'zma', 'Zm00001eb054100' => 'zma', 'Zm00001eb063350' => 'zma', 'Zm00001eb328560' => 'zma', 'Zm00001eb342820' => 'zma', 'Zm00001eb362210' => 'zma', 'Zm00001eb397730' => 'zma', 'Zm00001eb399750' => 'zma' ) $gf_id = 'HOM05D000959' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000959' ) $data_identifier = 'HOM05D000959' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 5, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 5, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 10, 'mbi' => (int) 3, 'mco' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 2, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 3, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 11, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399750' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000959', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '622', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p07100' => 'bna', 'A03p11720' => 'bna', 'A05p08300' => 'bna', 'A05p13380' => 'bna', 'A09p54130' => 'bna', 'A10p16690' => 'bna', 'A10p16700' => 'bna', 'A10p33390' => 'bna', 'Aa31LG10G16020' => 'aar', 'Aa31LG1G11810' => 'aar', 'Aa31LG1G11830' => 'aar', 'Aa31LG1G22510' => 'aar', 'Aa31LG5G4890' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5793' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2310' => 'aag', 'Actinidia08499' => 'ach', 'Actinidia11262' => 'ach', 'Actinidia23926' => 'ach', 'Actinidia34420' => 'ach', 'Actinidia36970' => 'ach', 'Ah.02g111220' => 'amhyb', 'Ah.15g097750' => 'amhyb', 'AL4G27500' => 'aly', 'AL6G11470' => 'aly', 'AL8G35950' => 'aly', 'AL8G35960' => 'aly', 'AL8G35970' => 'aly', 'Aqoxy1G00912' => 'aox', 'Aqoxy2G02253' => 'aox', 'Aqoxy2G02411' => 'aox', 'Aqoxy5G00485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BZ66YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K8ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM4FUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6BF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HFV7XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25JBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0YNNV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MAKK6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P70IT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP2Z6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V61LZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YWP64R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3S9AI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7PGHH' => 'arhy', 'AT2G32150' => 'ath', 'AT3G62040' => 'ath', 'AT5G02230' => 'ath', 'AT5G59480' => 'ath', 'AT5G59490' => 'ath', 'ATR0332G060' => 'atr', 'ATR0559G190' => 'atr', 'ATR0693G294' => 'atr', 'Atru.chr3.3975' => 'acertr', 'Atru.chr3.3976' => 'acertr', 'Atru.chr3.3977' => 'acertr', 'Atru.chr4.2498' => 'acertr', 'Atru.chr5.838' => 'acertr', 'Atru.chr8.1990' => 'acertr', 'Atru.chr8.1991' => 'acertr', 'Atru.chr8.1992' => 'acertr', 'AUR62001759' => 'cqu', 'AUR62009545' => 'cqu', 'AUR62010474' => 'cqu', 'AUR62025820' => 'cqu', 'AUR62030422' => 'cqu', 'AUR62033605' => 'cqu', 'AUR62038615' => 'cqu', 'AUR62041347' => 'cqu', 'BcaB01g04574' => 'bca', 'BcaB02g09263' => 'bca', 'BcaB02g10453' => 'bca', 'BcaB05g22513' => 'bca', 'BcaB08g36253' => 'bca', 'BcaB08g36254' => 'bca', 'BcaC01g06519' => 'bca', 'BcaC02g11889' => 'bca', 'BcaC03g14010' => 'bca', 'BcaC03g18439' => 'bca', 'BcaC04g19765' => 'bca', 'BcaC09g48432' => 'bca', 'BcaNung07302' => 'bca', 'BolC2t06040H' => 'bol', 'BolC2t07346H' => 'bol', 'BolC3t13817H' => 'bol', 'BolC4t22625H' => 'bol', 'BolC4t23297H' => 'bol', 'BolC8t51278H' => 'bol', 'BolC9t58050H' => 'bol', 'BolC9t58051H' => 'bol', 'BolC9t60163H' => 'bol', 'BraA02t04712Z' => 'bra', 'BraA02t05791Z' => 'bra', 'BraA03t10483Z' => 'bra', 'BraA05t19795Z' => 'bra', 'BraA05t20276Z' => 'bra', 'BraA09t40827Z' => 'bra', 'BraA10t43750Z' => 'bra', 'BraA10t43751Z' => 'bra', 'BraA10t45370Z' => 'bra', 'C02p00400' => 'bna', 'C02p12460' => 'bna', 'C03p13680' => 'bna', 'C04p10270' => 'bna', 'C04p17500' => 'bna', 'C08p37010' => 'bna', 'C09p51880' => 'bna', 'C09p51890' => 'bna', 'C09p74300' => 'bna', 'CAN.G179.26' => 'can', 'CAN.G3384.1' => 'can', 'CAN.G394.68' => 'can', 'CAN.G907.13' => 'can', 'CANSAT11G0012' => 'cansat', 'CANSAT25G1586' => 'cansat', 'CANSAT35G0735' => 'cansat', 'CANSAT54G0556' => 'cansat', 'CANSAT64G0356' => 'cansat', 'CANSAT78G2042' => 'cansat', 'CARHR125920' => 'chi', 'CARHR131910' => 'chi', 'CARHR172390' => 'chi', 'CARHR211140' => 'chi', 'CARHR285850' => 'chi', 'CARHR285860' => 'chi', 'Carub.0004s1347' => 'cru', 'Carub.0004s1960' => 'cru', 'Carub.0005s2880' => 'cru', 'Carub.0006s0107' => 'cru', 'Carub.0008s2015' => 'cru', 'Carub.0008s2016' => 'cru', 'Carub.0008s2017' => 'cru', 'Ca_01315_v3' => 'car', 'Ca_05063_v3' => 'car', 'Ca_10231_v3' => 'car', 'Ca_10913_v3' => 'car', 'Ca_19156_v3' => 'car', 'Ca_23644_v3' => 'car', 'Ca_26735_v3' => 'car', 'Cc01_g13130' => 'ccan', 'Cc02_g21690' => 'ccan', 'Cc03_g03600' => 'ccan', 'Cc06_g02510' => 'ccan', 'CDE02G1265' => 'cde', 'CDE05G0415' => 'cde', 'CDE08G1082' => 'cde', 'Cfa005780' => 'cfa', 'Cfa011522' => 'cfa', 'Cfa011523' => 'cfa', 'Cfa015627' => 'cfa', 'Cfa017359' => 'cfa', 'Ciclev10005687m.g' => 'ccl', 'Ciclev10012173m.g' => 'ccl', 'Ciclev10021621m.g' => 'ccl', 'Ciclev10028968m.g' => 'ccl', 'Ciclev10029907m.g' => 'ccl', 'CiPaw.01G164800' => 'cil', 'CiPaw.07G083700' => 'cil', 'CiPaw.07G127000' => 'cil', 'CiPaw.07G136900' => 'cil', 'CiPaw.08G081700' => 'cil', 'CiPaw.09G194600' => 'cil', 'CiPaw.10G146500' => 'cil', 'CiPaw.13G091500' => 'cil', 'CiPaw.13G091600' => 'cil', 'ClCG00G003390' => 'cla', 'ClCG01G007220' => 'cla', 'ClCG03G001370' => 'cla', 'ClCG04G008100' => 'cla', 'ClCG06G006110' => 'cla', 'ClCG06G006130' => 'cla', 'ClCG10G021210' => 'cla', 'COL.COLO4_07648' => 'col', 'COL.COLO4_07650' => 'col', 'COL.COLO4_07651' => 'col', 'COL.COLO4_14780' => 'col', 'COL.COLO4_18546' => 'col', 'COL.COLO4_18547' => 'col', 'COL.COLO4_23103' => 'col', 'COL.COLO4_30419' => 'col', 'COL.COLO4_34232' => 'col', 'Cpa.g.sc169.20' => 'cpa', 'Cpa.g.sc57.45' => 'cpa', 'Cpa.g.sc58.124' => 'cpa', 'Cpa.g.sc58.125' => 'cpa', 'Cpa.g.sc81.118' => 'cpa', 'Cpa.g.sc81.119' => 'cpa', 'Cre12.g524700' => 'cre', 'CsaV3_1G034430' => 'csa', 'CsaV3_1G034440' => 'csa', 'CsaV3_1G034450' => 'csa', 'CsaV3_3G034830' => 'csa', 'CsaV3_4G025090' => 'csa', 'CsaV3_5G018660' => 'csa', 'CsaV3_6G038160' => 'csa', 'CSS0003447' => 'camsi', 'CSS0017840' => 'camsi', 'CSS0019260' => 'camsi', 'CSS0040375' => 'camsi', 'CSS0042533' => 'camsi', 'DCAR_005960' => 'dca', 'DCAR_012104' => 'dca', 'DCAR_012105' => 'dca', 'DCAR_012293' => 'dca', 'DCAR_015632' => 'dca', 'DCAR_024602' => 'dca', 'DCAR_028752' => 'dca', 'Dinv06261' => 'din', 'Dinv13982' => 'din', 'Dinv17029' => 'din', 'Dinv18463' => 'din', 'Dinv33181' => 'din', 'Dinv35585' => 'din', 'Dinv37161' => 'din', 'Dinv42977' => 'din', 'Dinv43122' => 'din', 'Dinv44517' => 'din', 'Duzib093G0256' => 'dzi', 'Duzib106G1254' => 'dzi', 'Duzib128G1789' => 'dzi', 'Duzib133G0633' => 'dzi', 'Duzib138G0510' => 'dzi', 'Duzib150G1084' => 'dzi', 'Duzib168G0488' => 'dzi', 'Duzib168G1523' => 'dzi', 'Duzib170G0133' => 'dzi', 'ECA234G1433' => 'eca', 'ECA236G1432' => 'eca', 'ECA236G2256' => 'eca', 'ECA236G2365' => 'eca', 'ECA236G4830' => 'eca', 'ECA248G1505' => 'eca', 'EL10Ac3g06431' => 'bvu', 'EL10Ac5g12577' => 'bvu', 'EL10Ac6g13533' => 'bvu', 'EL10Ac7g16045' => 'bvu', 'Eucgr.A01281' => 'egr', 'Eucgr.B02326' => 'egr', 'Eucgr.H03532' => 'egr', 'Eucgr.K00553' => 'egr', 'Eucgr.K03116' => 'egr', 'FAN02G3963' => 'fan', 'FAN05G0438' => 'fan', 'FAN09G2434' => 'fan', 'FAN12G3984' => 'fan', 'FAN14G0798' => 'fan', 'FAN17G0652' => 'fan', 'FAN19G1988' => 'fan', 'FAN22G0632' => 'fan', 'FAN23G0387' => 'fan', 'FAN26G1323' => 'fan', 'FAN28G0666' => 'fan', 'FvH4_1g26080' => 'fve', 'FvH4_3g36780' => 'fve', 'FvH4_4g15270' => 'fve', 'FvH4_6g13490' => 'fve', 'Glyma.01G098700' => 'gma', 'Glyma.03G065900' => 'gma', 'Glyma.03G073754' => 'gma', 'Glyma.03G073758' => 'gma', 'Glyma.03G083200' => 'gma', 'Glyma.03G225500' => 'gma', 'Glyma.05G037766' => 'gma', 'Glyma.07G133500' => 'gma', 'Glyma.10G139400' => 'gma', 'Glyma.10G248900' => 'gma', 'Glyma.11G137800' => 'gma', 'Glyma.12G061300' => 'gma', 'Glyma.13G337900' => 'gma', 'Glyma.15G036600' => 'gma', 'Glyma.18G182800' => 'gma', 'Glyma.19G222500' => 'gma', 'Glyma.20G144800' => 'gma', 'Gohir.A01G222000' => 'ghi', 'Gohir.A03G044000' => 'ghi', 'Gohir.A03G044100' => 'ghi', 'Gohir.A04G083100' => 'ghi', 'Gohir.A07G127200' => 'ghi', 'Gohir.A07G132400' => 'ghi', 'Gohir.A08G000700' => 'ghi', 'Gohir.A11G327300' => 'ghi', 'Gohir.D01G211500' => 'ghi', 'Gohir.D03G123400' => 'ghi', 'Gohir.D03G123500' => 'ghi', 'Gohir.D04G121800' => 'ghi', 'Gohir.D07G131500' => 'ghi', 'Gohir.D07G136600' => 'ghi', 'Gohir.D08G011600' => 'ghi', 'Gohir.D11G346200' => 'ghi', 'Gorai.001G142800' => 'gra', 'Gorai.001G148700' => 'gra', 'Gorai.002G257300' => 'gra', 'Gorai.003G130000' => 'gra', 'Gorai.003G130100' => 'gra', 'Gorai.004G005300' => 'gra', 'Gorai.007G376500' => 'gra', 'Gorai.012G104700' => 'gra', 'GSVIVG01017946001' => 'vvi', 'GSVIVG01024928001' => 'vvi', 'GSVIVG01028227001' => 'vvi', 'GSVIVG01034151001' => 'vvi', 'HanXRQChr05g0135031' => 'han', 'HanXRQChr05g0135041' => 'han', 'HanXRQChr05g0140021' => 'han', 'HanXRQChr06g0178981' => 'han', 'HanXRQChr07g0188251' => 'han', 'HanXRQChr08g0235311' => 'han', 'HanXRQChr09g0271011' => 'han', 'HanXRQChr10g0293321' => 'han', 'HanXRQChr13g0388171' => 'han', 'Haze_00916' => 'cav', 'Haze_05063' => 'cav', 'Haze_20814' => 'cav', 'Haze_24128' => 'cav', 'Hma1.2p1_0745F.1_g212010' => 'hma', 'Hma1.2p1_0757F.1_g213260' => 'hma', 'Hma1.2p1_0936F.1_g238840' => 'hma', 'Hma1.2p1_1735F.1_g299890' => 'hma', 'Hma1.2p1_1861F.1_g305685' => 'hma', 'HPP92_003397' => 'vpl', 'HPP92_012597' => 'vpl', 'HPP92_015520' => 'vpl', 'HPP92_015539' => 'vpl', 'HPP92_020373' => 'vpl', 'Hund04938' => 'sun', 'Hund10677' => 'sun', 'Hund11033' => 'sun', 'Hund12155' => 'sun', 'Lalb_Chr01g0022551' => 'lal', 'Lalb_Chr03g0042341' => 'lal', 'Lalb_Chr07g0192931' => 'lal', 'Lalb_Chr12g0209551' => 'lal', 'Lalb_Chr19g0125251' => 'lal', 'Lalb_Chr19g0137891' => 'lal', 'Lalb_Chr21g0304641' => 'lal', 'Lalb_Chr21g0309881' => 'lal', 'Lj1A5T12' => 'lonja', 'Lj1C148G10' => 'lonja', 'Lj2A93T83' => 'lonja', 'Lj3A738G68' => 'lonja', 'Lj3C966T1' => 'lonja', 'Lj3g0018958' => 'lja', 'Lj3g0021831' => 'lja', 'Lj3g0025443' => 'lja', 'Lj4g0026809' => 'lja', 'Lj5g0012558' => 'lja', 'Lj5g0021586' => 'lja', 'Lsat_1_v5_gn_5_156840' => 'lsa', 'Lsat_1_v5_gn_8_73460' => 'lsa', 'Lsat_1_v5_gn_8_73481' => 'lsa', 'Lsat_1_v5_gn_9_31601' => 'lsa', 'Lsat_1_v5_gn_9_77320' => 'lsa', 'Manes.01G171300' => 'mes', 'Manes.01G171400' => 'mes', 'Manes.01G236100' => 'mes', 'Manes.02G130500' => 'mes', 'Manes.02G130600' => 'mes', 'Manes.03G180200' => 'mes', 'Manes.05G007000' => 'mes', 'Manes.08G084400' => 'mes', 'Manes.09G092600' => 'mes', 'Manes.15G027900' => 'mes', 'MBI04_g40948_MAGBIO' => 'mbi', 'MBI14_g12123_MAGBIO' => 'mbi', 'MBI18_g28915_MAGBIO' => 'mbi', 'MCO09G053' => 'mco', 'MCO11G782' => 'mco', 'MCO15G215' => 'mco', 'MD03G1088500' => 'mdo', 'MD03G1088600' => 'mdo', 'MD04G1130800' => 'mdo', 'MD09G1291700' => 'mdo', 'MD11G1097500' => 'mdo', 'MD11G1097600' => 'mdo', 'MD12G1143900' => 'mdo', 'MD13G1191400' => 'mdo', 'MD16G1191500' => 'mdo', 'Medtr1g085570' => 'mtr', 'Medtr1g104610' => 'mtr', 'Medtr2g097520' => 'mtr', 'Medtr4g021800' => 'mtr', 'Medtr4g021825' => 'mtr', 'Medtr4g064270' => 'mtr', 'Medtr4g064380' => 'mtr', 'Medtr7g062150' => 'mtr', 'MELO3C003138.2' => 'cme', 'MELO3C005187.2' => 'cme', 'MELO3C009252.2' => 'cme', 'MELO3C014481.2' => 'cme', 'MELO3C020616.2' => 'cme', 'MELO3C020617.2' => 'cme', 'MELO3C020618.2' => 'cme', 'Migut.G00328' => 'egut', 'Migut.J00320' => 'egut', 'Migut.L01000' => 'egut', 'Migut.L01953' => 'egut', 'MSTRG.10253' => 'ama', 'MSTRG.19077' => 'ama', 'MSTRG.26780' => 'ama', 'MSTRG.4023' => 'ama', 'MSTRG.5655' => 'ama', 'MSTRG.9992' => 'ama', 'Nitab4.5_0000043g0310' => 'nta', 'Nitab4.5_0000463g0080' => 'nta', 'Nitab4.5_0000705g0170' => 'nta', 'Nitab4.5_0001326g0060' => 'nta', 'Nitab4.5_0001628g0030' => 'nta', 'Nitab4.5_0002103g0110' => 'nta', 'Nitab4.5_0002946g0030' => 'nta', 'Nitab4.5_0004639g0030' => 'nta', 'Nn2g11149' => 'nnu', 'Nn2g13389' => 'nnu', 'Nn4g25326' => 'nnu', 'Nn4g26290' => 'nnu', 'Nn5g29865' => 'nnu', 'Oeu004163.1' => 'oeu', 'Oeu006901.1' => 'oeu', 'Oeu010096.1' => 'oeu', 'Oeu024340.1' => 'oeu', 'Oeu048369.1' => 'oeu', 'Os01g0973000' => 'osa', 'Os03g0273800' => 'osa', 'Os03g0701200' => 'osa', 'Os03g0834050' => 'osa', 'Os07g0634400' => 'osa', 'Peaxi162Scf00092g01414' => 'pax', 'Peaxi162Scf00165g00818' => 'pax', 'Peaxi162Scf00309g00516' => 'pax', 'Peaxi162Scf00774g00218' => 'pax', 'PGR004G1824' => 'pgr', 'PGR004G2606' => 'pgr', 'PGR031G2716' => 'pgr', 'PGR102G2460' => 'pgr', 'PGR142G2599' => 'pgr', 'PGSC0003DMG400000843' => 'stu', 'PGSC0003DMG400008829' => 'stu', 'PGSC0003DMG400030418' => 'stu', 'PGSC0003DMG400031834' => 'stu', 'PGSC0003DMG401028300' => 'stu', 'PGSC0003DMG402028300' => 'stu', 'Phvul.001G219300' => 'pvu', 'Phvul.007G056000' => 'pvu', 'Phvul.007G208000' => 'pvu', 'Phvul.008G119500' => 'pvu', 'Phvul.010G011200' => 'pvu', 'Phvul.010G014800' => 'pvu', 'Phvul.011G062900' => 'pvu', 'Phvul.L007043' => 'pvu', 'Potri.001G242300' => 'ptr', 'Potri.002G185300' => 'ptr', 'Potri.006G086900' => 'ptr', 'Potri.008G151700' => 'ptr', 'Potri.009G033500' => 'ptr', 'Potri.010G089300' => 'ptr', 'Potri.014G110800' => 'ptr', 'Pp3c27_8130' => 'ppa', 'Pp3c6_27410' => 'ppa', 'PRCOL_00001659' => 'pco', 'PRCOL_00001927' => 'pco', 'PRCOL_00003649' => 'pco', 'Prupe.1G011600' => 'ppe', 'Prupe.3G000800' => 'ppe', 'Prupe.3G001100' => 'ppe', 'Prupe.6G072700' => 'ppe', 'Prupe.6G072800' => 'ppe', 'Prupe.6G257300' => 'ppe', 'Prupe.8G033000' => 'ppe', 'Psat0s2633g0080' => 'psa', 'Psat0s3396g0080' => 'psa', 'Psat0s3396g0200' => 'psa', 'Psat3g139080' => 'psa', 'Psat5g285080' => 'psa', 'Psat6g157760' => 'psa', 'Psat6g208440' => 'psa', 'Psat7g215320' => 'psa', 'Psat7g215400' => 'psa', 'Psat7g235600' => 'psa', 'Psat7g235760' => 'psa', 'PSO063G4603' => 'pso', 'PSO210G0182' => 'pso', 'PSO210G0196' => 'pso', 'PSO339G0394' => 'pso', 'PSO339G4127' => 'pso', 'PSO513G0064' => 'pso', 'PSO761G0079' => 'pso', 'QL01p031003' => 'qlo', 'QL01p031078' => 'qlo', 'QL06p003004' => 'qlo', 'QL07p048731' => 'qlo', 'QL09p037427' => 'qlo', 'RcHm_v2.0_Chr3g0466361' => 'rch', 'RcHm_v2.0_Chr3g0485571' => 'rch', 'RcHm_v2.0_Chr4g0416551' => 'rch', 'RcHm_v2.0_Chr5g0065831' => 'rch', 'Rhsim01G0230500' => 'rsi', 'Rhsim05G0194000' => 'rsi', 'Rhsim08G0250400' => 'rsi', 'Sabra02G0131000' => 'sbr', 'Sabra06G0066300' => 'sbr', 'Sabra08G0115500' => 'sbr', 'Sabra09G0023900' => 'sbr', 'Sabra10G0054000' => 'sbr', 'Sabra14G0081500' => 'sbr', 'Sabra16G0147100' => 'sbr', 'SalBow2G2957' => 'sbo', 'SalBow4G3320' => 'sbo', 'SalBow8G1894' => 'sbo', 'Sc07g0007950' => 'sci', 'Sc12g0001360' => 'sci', 'Sc13g0004330' => 'sci', 'Sc20g0005010' => 'sci', 'Sed0000361' => 'sed', 'Sed0001706' => 'sed', 'Sed0002422' => 'sed', 'Sed0004029' => 'sed', 'Sed0004602' => 'sed', 'Sed0004943' => 'sed', 'Sed0008646' => 'sed', 'Sed0023313' => 'sed', 'Sed0024843' => 'sed', 'SEGI_00081' => 'sgi', 'SEGI_00947' => 'sgi', 'SEGI_04046' => 'sgi', 'SEGI_06880' => 'sgi', 'SEGI_09736' => 'sgi', 'SEGI_12741' => 'sgi', 'SEGI_14530' => 'sgi', 'SEGI_20705' => 'sgi', 'SEGI_26088' => 'sgi', 'SEGI_28323' => 'sgi', 'SEGI_33343' => 'sgi', 'SGA_v2.0_scaffold126G33775' => 'sas', 'SGA_v2.0_scaffold2G01337' => 'sas', 'SGA_v2.0_scaffold38G15006' => 'sas', 'SGA_v2.0_scaffold39G15264' => 'sas', 'SGA_v2.0_scaffold453G51880' => 'sas', 'SHI12696' => 'shi', 'SMO367G1096' => 'smo', 'Solyc01g068630.3' => 'sly', 'Solyc05g011880.3' => 'sly', 'Solyc06g076300.3' => 'sly', 'Solyc09g010940.4' => 'sly', 'Solyc09g075890.3' => 'sly', 'Sopen01g030560' => 'spe', 'Sopen05g006630' => 'spe', 'Sopen06g032720' => 'spe', 'Sopen09g005660' => 'spe', 'Sopen09g030690' => 'spe', 'Sp4g14540' => 'spa', 'Sp4g20030' => 'spa', 'Sp5g01320' => 'spa', 'Sp6g21170' => 'spa', 'Sp6g21180' => 'spa', 'Sp6g21190' => 'spa', 'Sp6g40220' => 'spa', 'TAR362G0122' => 'tar', 'TAR362G1338' => 'tar', 'TAR369G0590' => 'tar', 'TAR371G0824' => 'tar', 'TAR622G1429' => 'tar', 'TAR623G0734' => 'tar', 'TAR625G0441' => 'tar', 'TAR629G0976' => 'tar', 'TAR633G1195' => 'tar', 'TAR636G2660' => 'tar', 'THA.LOC104799440' => 'tha', 'THA.LOC104800966' => 'tha', 'THA.LOC104806559' => 'tha', 'THA.LOC104810765' => 'tha', 'THA.LOC104816266' => 'tha', 'THA.LOC104817419' => 'tha', 'THA.LOC104827021' => 'tha', 'Thecc.01G327400' => 'tca', 'Thecc.04G229200' => 'tca', 'Thecc.05G037400' => 'tca', 'Thecc.09G318600' => 'tca', 'Thecc.09G318700' => 'tca', 'Thhalv10006238m.g' => 'esa', 'Thhalv10014321m.g' => 'esa', 'Thhalv10014335m.g' => 'esa', 'Thhalv10015826m.g' => 'esa', 'Thhalv10017107m.g' => 'esa', 'Thhalv10017180m.g' => 'esa', 'Thhalv10029339m.g' => 'esa', 'TPR.G1699' => 'tpr', 'TPR.G23609' => 'tpr', 'TPR.G3081' => 'tpr', 'TPR.G40397' => 'tpr', 'TPR.G5522' => 'tpr', 'TPR.G5618' => 'tpr', 'TPR.G5626' => 'tpr', 'TWI09G1632' => 'twi', 'TWI23G1230' => 'twi', 'TWI53G1064' => 'twi', 'TWI59G0751' => 'twi', 'TWI74G0947' => 'twi', 'TWI77G0337' => 'twi', 'TWI79G1254' => 'twi', 'unitig_0.g2341' => 'ugi', 'unitig_26.g10006' => 'ugi', 'unitig_26.g10008' => 'ugi', 'unitig_26.g9192' => 'ugi', 'vmacro14547' => 'vma', 'vmacro15333' => 'vma', 'vmacro18743' => 'vma', 'vmacro20166' => 'vma', 'VMungo0331G0523' => 'vmu', 'VMungo0331G1202' => 'vmu', 'VMungo0720G1228' => 'vmu', 'VMungo0720G1514' => 'vmu', 'VMungo1080G0169' => 'vmu', 'VMungo1127G1475' => 'vmu', 'VMungo1383G1208' => 'vmu', 'VMungo1383G1698' => 'vmu', 'Zm00001eb012270' => 'zma', 'Zm00001eb054100' => 'zma', 'Zm00001eb063350' => 'zma', 'Zm00001eb328560' => 'zma', 'Zm00001eb342820' => 'zma', 'Zm00001eb362210' => 'zma', 'Zm00001eb397730' => 'zma', 'Zm00001eb399750' => 'zma' ), 'gf_id' => 'HOM05D000959', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000959' ), 'data_identifier' => 'HOM05D000959', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000959', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '622', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p07100' => 'bna', 'A03p11720' => 'bna', 'A05p08300' => 'bna', 'A05p13380' => 'bna', 'A09p54130' => 'bna', 'A10p16690' => 'bna', 'A10p16700' => 'bna', 'A10p33390' => 'bna', 'Aa31LG10G16020' => 'aar', 'Aa31LG1G11810' => 'aar', 'Aa31LG1G11830' => 'aar', 'Aa31LG1G22510' => 'aar', 'Aa31LG5G4890' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5793' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2310' => 'aag', 'Actinidia08499' => 'ach', 'Actinidia11262' => 'ach', 'Actinidia23926' => 'ach', 'Actinidia34420' => 'ach', 'Actinidia36970' => 'ach', 'Ah.02g111220' => 'amhyb', 'Ah.15g097750' => 'amhyb', 'AL4G27500' => 'aly', 'AL6G11470' => 'aly', 'AL8G35950' => 'aly', 'AL8G35960' => 'aly', 'AL8G35970' => 'aly', 'Aqoxy1G00912' => 'aox', 'Aqoxy2G02253' => 'aox', 'Aqoxy2G02411' => 'aox', 'Aqoxy5G00485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BZ66YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K8ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM4FUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6BF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HFV7XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25JBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0YNNV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MAKK6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P70IT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP2Z6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V61LZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YWP64R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3S9AI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7PGHH' => 'arhy', 'AT2G32150' => 'ath', 'AT3G62040' => 'ath', 'AT5G02230' => 'ath', 'AT5G59480' => 'ath', 'AT5G59490' => 'ath', 'ATR0332G060' => 'atr', 'ATR0559G190' => 'atr', 'ATR0693G294' => 'atr', 'Atru.chr3.3975' => 'acertr', 'Atru.chr3.3976' => 'acertr', 'Atru.chr3.3977' => 'acertr', 'Atru.chr4.2498' => 'acertr', 'Atru.chr5.838' => 'acertr', 'Atru.chr8.1990' => 'acertr', 'Atru.chr8.1991' => 'acertr', 'Atru.chr8.1992' => 'acertr', 'AUR62001759' => 'cqu', 'AUR62009545' => 'cqu', 'AUR62010474' => 'cqu', 'AUR62025820' => 'cqu', 'AUR62030422' => 'cqu', 'AUR62033605' => 'cqu', 'AUR62038615' => 'cqu', 'AUR62041347' => 'cqu', 'BcaB01g04574' => 'bca', 'BcaB02g09263' => 'bca', 'BcaB02g10453' => 'bca', 'BcaB05g22513' => 'bca', 'BcaB08g36253' => 'bca', 'BcaB08g36254' => 'bca', 'BcaC01g06519' => 'bca', 'BcaC02g11889' => 'bca', 'BcaC03g14010' => 'bca', 'BcaC03g18439' => 'bca', 'BcaC04g19765' => 'bca', 'BcaC09g48432' => 'bca', 'BcaNung07302' => 'bca', 'BolC2t06040H' => 'bol', 'BolC2t07346H' => 'bol', 'BolC3t13817H' => 'bol', 'BolC4t22625H' => 'bol', 'BolC4t23297H' => 'bol', 'BolC8t51278H' => 'bol', 'BolC9t58050H' => 'bol', 'BolC9t58051H' => 'bol', 'BolC9t60163H' => 'bol', 'BraA02t04712Z' => 'bra', 'BraA02t05791Z' => 'bra', 'BraA03t10483Z' => 'bra', 'BraA05t19795Z' => 'bra', 'BraA05t20276Z' => 'bra', 'BraA09t40827Z' => 'bra', 'BraA10t43750Z' => 'bra', 'BraA10t43751Z' => 'bra', 'BraA10t45370Z' => 'bra', 'C02p00400' => 'bna', 'C02p12460' => 'bna', 'C03p13680' => 'bna', 'C04p10270' => 'bna', 'C04p17500' => 'bna', 'C08p37010' => 'bna', 'C09p51880' => 'bna', 'C09p51890' => 'bna', 'C09p74300' => 'bna', 'CAN.G179.26' => 'can', 'CAN.G3384.1' => 'can', 'CAN.G394.68' => 'can', 'CAN.G907.13' => 'can', 'CANSAT11G0012' => 'cansat', 'CANSAT25G1586' => 'cansat', 'CANSAT35G0735' => 'cansat', 'CANSAT54G0556' => 'cansat', 'CANSAT64G0356' => 'cansat', 'CANSAT78G2042' => 'cansat', 'CARHR125920' => 'chi', 'CARHR131910' => 'chi', 'CARHR172390' => 'chi', 'CARHR211140' => 'chi', 'CARHR285850' => 'chi', 'CARHR285860' => 'chi', 'Carub.0004s1347' => 'cru', 'Carub.0004s1960' => 'cru', 'Carub.0005s2880' => 'cru', 'Carub.0006s0107' => 'cru', 'Carub.0008s2015' => 'cru', 'Carub.0008s2016' => 'cru', 'Carub.0008s2017' => 'cru', 'Ca_01315_v3' => 'car', 'Ca_05063_v3' => 'car', 'Ca_10231_v3' => 'car', 'Ca_10913_v3' => 'car', 'Ca_19156_v3' => 'car', 'Ca_23644_v3' => 'car', 'Ca_26735_v3' => 'car', 'Cc01_g13130' => 'ccan', 'Cc02_g21690' => 'ccan', 'Cc03_g03600' => 'ccan', 'Cc06_g02510' => 'ccan', 'CDE02G1265' => 'cde', 'CDE05G0415' => 'cde', 'CDE08G1082' => 'cde', 'Cfa005780' => 'cfa', 'Cfa011522' => 'cfa', 'Cfa011523' => 'cfa', 'Cfa015627' => 'cfa', 'Cfa017359' => 'cfa', 'Ciclev10005687m.g' => 'ccl', 'Ciclev10012173m.g' => 'ccl', 'Ciclev10021621m.g' => 'ccl', 'Ciclev10028968m.g' => 'ccl', 'Ciclev10029907m.g' => 'ccl', 'CiPaw.01G164800' => 'cil', 'CiPaw.07G083700' => 'cil', 'CiPaw.07G127000' => 'cil', 'CiPaw.07G136900' => 'cil', 'CiPaw.08G081700' => 'cil', 'CiPaw.09G194600' => 'cil', 'CiPaw.10G146500' => 'cil', 'CiPaw.13G091500' => 'cil', 'CiPaw.13G091600' => 'cil', 'ClCG00G003390' => 'cla', 'ClCG01G007220' => 'cla', 'ClCG03G001370' => 'cla', 'ClCG04G008100' => 'cla', 'ClCG06G006110' => 'cla', 'ClCG06G006130' => 'cla', 'ClCG10G021210' => 'cla', 'COL.COLO4_07648' => 'col', 'COL.COLO4_07650' => 'col', 'COL.COLO4_07651' => 'col', 'COL.COLO4_14780' => 'col', 'COL.COLO4_18546' => 'col', 'COL.COLO4_18547' => 'col', 'COL.COLO4_23103' => 'col', 'COL.COLO4_30419' => 'col', 'COL.COLO4_34232' => 'col', 'Cpa.g.sc169.20' => 'cpa', 'Cpa.g.sc57.45' => 'cpa', 'Cpa.g.sc58.124' => 'cpa', 'Cpa.g.sc58.125' => 'cpa', 'Cpa.g.sc81.118' => 'cpa', 'Cpa.g.sc81.119' => 'cpa', 'Cre12.g524700' => 'cre', 'CsaV3_1G034430' => 'csa', 'CsaV3_1G034440' => 'csa', 'CsaV3_1G034450' => 'csa', 'CsaV3_3G034830' => 'csa', 'CsaV3_4G025090' => 'csa', 'CsaV3_5G018660' => 'csa', 'CsaV3_6G038160' => 'csa', 'CSS0003447' => 'camsi', 'CSS0017840' => 'camsi', 'CSS0019260' => 'camsi', 'CSS0040375' => 'camsi', 'CSS0042533' => 'camsi', 'DCAR_005960' => 'dca', 'DCAR_012104' => 'dca', 'DCAR_012105' => 'dca', 'DCAR_012293' => 'dca', 'DCAR_015632' => 'dca', 'DCAR_024602' => 'dca', 'DCAR_028752' => 'dca', 'Dinv06261' => 'din', 'Dinv13982' => 'din', 'Dinv17029' => 'din', 'Dinv18463' => 'din', 'Dinv33181' => 'din', 'Dinv35585' => 'din', 'Dinv37161' => 'din', 'Dinv42977' => 'din', 'Dinv43122' => 'din', 'Dinv44517' => 'din', 'Duzib093G0256' => 'dzi', 'Duzib106G1254' => 'dzi', 'Duzib128G1789' => 'dzi', 'Duzib133G0633' => 'dzi', 'Duzib138G0510' => 'dzi', 'Duzib150G1084' => 'dzi', 'Duzib168G0488' => 'dzi', 'Duzib168G1523' => 'dzi', 'Duzib170G0133' => 'dzi', 'ECA234G1433' => 'eca', 'ECA236G1432' => 'eca', 'ECA236G2256' => 'eca', 'ECA236G2365' => 'eca', 'ECA236G4830' => 'eca', 'ECA248G1505' => 'eca', 'EL10Ac3g06431' => 'bvu', 'EL10Ac5g12577' => 'bvu', 'EL10Ac6g13533' => 'bvu', 'EL10Ac7g16045' => 'bvu', 'Eucgr.A01281' => 'egr', 'Eucgr.B02326' => 'egr', 'Eucgr.H03532' => 'egr', 'Eucgr.K00553' => 'egr', 'Eucgr.K03116' => 'egr', 'FAN02G3963' => 'fan', 'FAN05G0438' => 'fan', 'FAN09G2434' => 'fan', 'FAN12G3984' => 'fan', 'FAN14G0798' => 'fan', 'FAN17G0652' => 'fan', 'FAN19G1988' => 'fan', 'FAN22G0632' => 'fan', 'FAN23G0387' => 'fan', 'FAN26G1323' => 'fan', 'FAN28G0666' => 'fan', 'FvH4_1g26080' => 'fve', 'FvH4_3g36780' => 'fve', 'FvH4_4g15270' => 'fve', 'FvH4_6g13490' => 'fve', 'Glyma.01G098700' => 'gma', 'Glyma.03G065900' => 'gma', 'Glyma.03G073754' => 'gma', 'Glyma.03G073758' => 'gma', 'Glyma.03G083200' => 'gma', 'Glyma.03G225500' => 'gma', 'Glyma.05G037766' => 'gma', 'Glyma.07G133500' => 'gma', 'Glyma.10G139400' => 'gma', 'Glyma.10G248900' => 'gma', 'Glyma.11G137800' => 'gma', 'Glyma.12G061300' => 'gma', 'Glyma.13G337900' => 'gma', 'Glyma.15G036600' => 'gma', 'Glyma.18G182800' => 'gma', 'Glyma.19G222500' => 'gma', 'Glyma.20G144800' => 'gma', 'Gohir.A01G222000' => 'ghi', 'Gohir.A03G044000' => 'ghi', 'Gohir.A03G044100' => 'ghi', 'Gohir.A04G083100' => 'ghi', 'Gohir.A07G127200' => 'ghi', 'Gohir.A07G132400' => 'ghi', 'Gohir.A08G000700' => 'ghi', 'Gohir.A11G327300' => 'ghi', 'Gohir.D01G211500' => 'ghi', 'Gohir.D03G123400' => 'ghi', 'Gohir.D03G123500' => 'ghi', 'Gohir.D04G121800' => 'ghi', 'Gohir.D07G131500' => 'ghi', 'Gohir.D07G136600' => 'ghi', 'Gohir.D08G011600' => 'ghi', 'Gohir.D11G346200' => 'ghi', 'Gorai.001G142800' => 'gra', 'Gorai.001G148700' => 'gra', 'Gorai.002G257300' => 'gra', 'Gorai.003G130000' => 'gra', 'Gorai.003G130100' => 'gra', 'Gorai.004G005300' => 'gra', 'Gorai.007G376500' => 'gra', 'Gorai.012G104700' => 'gra', 'GSVIVG01017946001' => 'vvi', 'GSVIVG01024928001' => 'vvi', 'GSVIVG01028227001' => 'vvi', 'GSVIVG01034151001' => 'vvi', 'HanXRQChr05g0135031' => 'han', 'HanXRQChr05g0135041' => 'han', 'HanXRQChr05g0140021' => 'han', 'HanXRQChr06g0178981' => 'han', 'HanXRQChr07g0188251' => 'han', 'HanXRQChr08g0235311' => 'han', 'HanXRQChr09g0271011' => 'han', 'HanXRQChr10g0293321' => 'han', 'HanXRQChr13g0388171' => 'han', 'Haze_00916' => 'cav', 'Haze_05063' => 'cav', 'Haze_20814' => 'cav', 'Haze_24128' => 'cav', 'Hma1.2p1_0745F.1_g212010' => 'hma', 'Hma1.2p1_0757F.1_g213260' => 'hma', 'Hma1.2p1_0936F.1_g238840' => 'hma', 'Hma1.2p1_1735F.1_g299890' => 'hma', 'Hma1.2p1_1861F.1_g305685' => 'hma', 'HPP92_003397' => 'vpl', 'HPP92_012597' => 'vpl', 'HPP92_015520' => 'vpl', 'HPP92_015539' => 'vpl', 'HPP92_020373' => 'vpl', 'Hund04938' => 'sun', 'Hund10677' => 'sun', 'Hund11033' => 'sun', 'Hund12155' => 'sun', 'Lalb_Chr01g0022551' => 'lal', 'Lalb_Chr03g0042341' => 'lal', 'Lalb_Chr07g0192931' => 'lal', 'Lalb_Chr12g0209551' => 'lal', 'Lalb_Chr19g0125251' => 'lal', 'Lalb_Chr19g0137891' => 'lal', 'Lalb_Chr21g0304641' => 'lal', 'Lalb_Chr21g0309881' => 'lal', 'Lj1A5T12' => 'lonja', 'Lj1C148G10' => 'lonja', 'Lj2A93T83' => 'lonja', 'Lj3A738G68' => 'lonja', 'Lj3C966T1' => 'lonja', 'Lj3g0018958' => 'lja', 'Lj3g0021831' => 'lja', 'Lj3g0025443' => 'lja', 'Lj4g0026809' => 'lja', 'Lj5g0012558' => 'lja', 'Lj5g0021586' => 'lja', 'Lsat_1_v5_gn_5_156840' => 'lsa', 'Lsat_1_v5_gn_8_73460' => 'lsa', 'Lsat_1_v5_gn_8_73481' => 'lsa', 'Lsat_1_v5_gn_9_31601' => 'lsa', 'Lsat_1_v5_gn_9_77320' => 'lsa', 'Manes.01G171300' => 'mes', 'Manes.01G171400' => 'mes', 'Manes.01G236100' => 'mes', 'Manes.02G130500' => 'mes', 'Manes.02G130600' => 'mes', 'Manes.03G180200' => 'mes', 'Manes.05G007000' => 'mes', 'Manes.08G084400' => 'mes', 'Manes.09G092600' => 'mes', 'Manes.15G027900' => 'mes', 'MBI04_g40948_MAGBIO' => 'mbi', 'MBI14_g12123_MAGBIO' => 'mbi', 'MBI18_g28915_MAGBIO' => 'mbi', 'MCO09G053' => 'mco', 'MCO11G782' => 'mco', 'MCO15G215' => 'mco', 'MD03G1088500' => 'mdo', 'MD03G1088600' => 'mdo', 'MD04G1130800' => 'mdo', 'MD09G1291700' => 'mdo', 'MD11G1097500' => 'mdo', 'MD11G1097600' => 'mdo', 'MD12G1143900' => 'mdo', 'MD13G1191400' => 'mdo', 'MD16G1191500' => 'mdo', 'Medtr1g085570' => 'mtr', 'Medtr1g104610' => 'mtr', 'Medtr2g097520' => 'mtr', 'Medtr4g021800' => 'mtr', 'Medtr4g021825' => 'mtr', 'Medtr4g064270' => 'mtr', 'Medtr4g064380' => 'mtr', 'Medtr7g062150' => 'mtr', 'MELO3C003138.2' => 'cme', 'MELO3C005187.2' => 'cme', 'MELO3C009252.2' => 'cme', 'MELO3C014481.2' => 'cme', 'MELO3C020616.2' => 'cme', 'MELO3C020617.2' => 'cme', 'MELO3C020618.2' => 'cme', 'Migut.G00328' => 'egut', 'Migut.J00320' => 'egut', 'Migut.L01000' => 'egut', 'Migut.L01953' => 'egut', 'MSTRG.10253' => 'ama', 'MSTRG.19077' => 'ama', 'MSTRG.26780' => 'ama', 'MSTRG.4023' => 'ama', 'MSTRG.5655' => 'ama', 'MSTRG.9992' => 'ama', 'Nitab4.5_0000043g0310' => 'nta', 'Nitab4.5_0000463g0080' => 'nta', 'Nitab4.5_0000705g0170' => 'nta', 'Nitab4.5_0001326g0060' => 'nta', 'Nitab4.5_0001628g0030' => 'nta', 'Nitab4.5_0002103g0110' => 'nta', 'Nitab4.5_0002946g0030' => 'nta', 'Nitab4.5_0004639g0030' => 'nta', 'Nn2g11149' => 'nnu', 'Nn2g13389' => 'nnu', 'Nn4g25326' => 'nnu', 'Nn4g26290' => 'nnu', 'Nn5g29865' => 'nnu', 'Oeu004163.1' => 'oeu', 'Oeu006901.1' => 'oeu', 'Oeu010096.1' => 'oeu', 'Oeu024340.1' => 'oeu', 'Oeu048369.1' => 'oeu', 'Os01g0973000' => 'osa', 'Os03g0273800' => 'osa', 'Os03g0701200' => 'osa', 'Os03g0834050' => 'osa', 'Os07g0634400' => 'osa', 'Peaxi162Scf00092g01414' => 'pax', 'Peaxi162Scf00165g00818' => 'pax', 'Peaxi162Scf00309g00516' => 'pax', 'Peaxi162Scf00774g00218' => 'pax', 'PGR004G1824' => 'pgr', 'PGR004G2606' => 'pgr', 'PGR031G2716' => 'pgr', 'PGR102G2460' => 'pgr', 'PGR142G2599' => 'pgr', 'PGSC0003DMG400000843' => 'stu', 'PGSC0003DMG400008829' => 'stu', 'PGSC0003DMG400030418' => 'stu', 'PGSC0003DMG400031834' => 'stu', 'PGSC0003DMG401028300' => 'stu', 'PGSC0003DMG402028300' => 'stu', 'Phvul.001G219300' => 'pvu', 'Phvul.007G056000' => 'pvu', 'Phvul.007G208000' => 'pvu', 'Phvul.008G119500' => 'pvu', 'Phvul.010G011200' => 'pvu', 'Phvul.010G014800' => 'pvu', 'Phvul.011G062900' => 'pvu', 'Phvul.L007043' => 'pvu', 'Potri.001G242300' => 'ptr', 'Potri.002G185300' => 'ptr', 'Potri.006G086900' => 'ptr', 'Potri.008G151700' => 'ptr', 'Potri.009G033500' => 'ptr', 'Potri.010G089300' => 'ptr', 'Potri.014G110800' => 'ptr', 'Pp3c27_8130' => 'ppa', 'Pp3c6_27410' => 'ppa', 'PRCOL_00001659' => 'pco', 'PRCOL_00001927' => 'pco', 'PRCOL_00003649' => 'pco', 'Prupe.1G011600' => 'ppe', 'Prupe.3G000800' => 'ppe', 'Prupe.3G001100' => 'ppe', 'Prupe.6G072700' => 'ppe', 'Prupe.6G072800' => 'ppe', 'Prupe.6G257300' => 'ppe', 'Prupe.8G033000' => 'ppe', 'Psat0s2633g0080' => 'psa', 'Psat0s3396g0080' => 'psa', 'Psat0s3396g0200' => 'psa', 'Psat3g139080' => 'psa', 'Psat5g285080' => 'psa', 'Psat6g157760' => 'psa', 'Psat6g208440' => 'psa', 'Psat7g215320' => 'psa', 'Psat7g215400' => 'psa', 'Psat7g235600' => 'psa', 'Psat7g235760' => 'psa', 'PSO063G4603' => 'pso', 'PSO210G0182' => 'pso', 'PSO210G0196' => 'pso', 'PSO339G0394' => 'pso', 'PSO339G4127' => 'pso', 'PSO513G0064' => 'pso', 'PSO761G0079' => 'pso', 'QL01p031003' => 'qlo', 'QL01p031078' => 'qlo', 'QL06p003004' => 'qlo', 'QL07p048731' => 'qlo', 'QL09p037427' => 'qlo', 'RcHm_v2.0_Chr3g0466361' => 'rch', 'RcHm_v2.0_Chr3g0485571' => 'rch', 'RcHm_v2.0_Chr4g0416551' => 'rch', 'RcHm_v2.0_Chr5g0065831' => 'rch', 'Rhsim01G0230500' => 'rsi', 'Rhsim05G0194000' => 'rsi', 'Rhsim08G0250400' => 'rsi', 'Sabra02G0131000' => 'sbr', 'Sabra06G0066300' => 'sbr', 'Sabra08G0115500' => 'sbr', 'Sabra09G0023900' => 'sbr', 'Sabra10G0054000' => 'sbr', 'Sabra14G0081500' => 'sbr', 'Sabra16G0147100' => 'sbr', 'SalBow2G2957' => 'sbo', 'SalBow4G3320' => 'sbo', 'SalBow8G1894' => 'sbo', 'Sc07g0007950' => 'sci', 'Sc12g0001360' => 'sci', 'Sc13g0004330' => 'sci', 'Sc20g0005010' => 'sci', 'Sed0000361' => 'sed', 'Sed0001706' => 'sed', 'Sed0002422' => 'sed', 'Sed0004029' => 'sed', 'Sed0004602' => 'sed', 'Sed0004943' => 'sed', 'Sed0008646' => 'sed', 'Sed0023313' => 'sed', 'Sed0024843' => 'sed', 'SEGI_00081' => 'sgi', 'SEGI_00947' => 'sgi', 'SEGI_04046' => 'sgi', 'SEGI_06880' => 'sgi', 'SEGI_09736' => 'sgi', 'SEGI_12741' => 'sgi', 'SEGI_14530' => 'sgi', 'SEGI_20705' => 'sgi', 'SEGI_26088' => 'sgi', 'SEGI_28323' => 'sgi', 'SEGI_33343' => 'sgi', 'SGA_v2.0_scaffold126G33775' => 'sas', 'SGA_v2.0_scaffold2G01337' => 'sas', 'SGA_v2.0_scaffold38G15006' => 'sas', 'SGA_v2.0_scaffold39G15264' => 'sas', 'SGA_v2.0_scaffold453G51880' => 'sas', 'SHI12696' => 'shi', 'SMO367G1096' => 'smo', 'Solyc01g068630.3' => 'sly', 'Solyc05g011880.3' => 'sly', 'Solyc06g076300.3' => 'sly', 'Solyc09g010940.4' => 'sly', 'Solyc09g075890.3' => 'sly', 'Sopen01g030560' => 'spe', 'Sopen05g006630' => 'spe', 'Sopen06g032720' => 'spe', 'Sopen09g005660' => 'spe', 'Sopen09g030690' => 'spe', 'Sp4g14540' => 'spa', 'Sp4g20030' => 'spa', 'Sp5g01320' => 'spa', 'Sp6g21170' => 'spa', 'Sp6g21180' => 'spa', 'Sp6g21190' => 'spa', 'Sp6g40220' => 'spa', 'TAR362G0122' => 'tar', 'TAR362G1338' => 'tar', 'TAR369G0590' => 'tar', 'TAR371G0824' => 'tar', 'TAR622G1429' => 'tar', 'TAR623G0734' => 'tar', 'TAR625G0441' => 'tar', 'TAR629G0976' => 'tar', 'TAR633G1195' => 'tar', 'TAR636G2660' => 'tar', 'THA.LOC104799440' => 'tha', 'THA.LOC104800966' => 'tha', 'THA.LOC104806559' => 'tha', 'THA.LOC104810765' => 'tha', 'THA.LOC104816266' => 'tha', 'THA.LOC104817419' => 'tha', 'THA.LOC104827021' => 'tha', 'Thecc.01G327400' => 'tca', 'Thecc.04G229200' => 'tca', 'Thecc.05G037400' => 'tca', 'Thecc.09G318600' => 'tca', 'Thecc.09G318700' => 'tca', 'Thhalv10006238m.g' => 'esa', 'Thhalv10014321m.g' => 'esa', 'Thhalv10014335m.g' => 'esa', 'Thhalv10015826m.g' => 'esa', 'Thhalv10017107m.g' => 'esa', 'Thhalv10017180m.g' => 'esa', 'Thhalv10029339m.g' => 'esa', 'TPR.G1699' => 'tpr', 'TPR.G23609' => 'tpr', 'TPR.G3081' => 'tpr', 'TPR.G40397' => 'tpr', 'TPR.G5522' => 'tpr', 'TPR.G5618' => 'tpr', 'TPR.G5626' => 'tpr', 'TWI09G1632' => 'twi', 'TWI23G1230' => 'twi', 'TWI53G1064' => 'twi', 'TWI59G0751' => 'twi', 'TWI74G0947' => 'twi', 'TWI77G0337' => 'twi', 'TWI79G1254' => 'twi', 'unitig_0.g2341' => 'ugi', 'unitig_26.g10006' => 'ugi', 'unitig_26.g10008' => 'ugi', 'unitig_26.g9192' => 'ugi', 'vmacro14547' => 'vma', 'vmacro15333' => 'vma', 'vmacro18743' => 'vma', 'vmacro20166' => 'vma', 'VMungo0331G0523' => 'vmu', 'VMungo0331G1202' => 'vmu', 'VMungo0720G1228' => 'vmu', 'VMungo0720G1514' => 'vmu', 'VMungo1080G0169' => 'vmu', 'VMungo1127G1475' => 'vmu', 'VMungo1383G1208' => 'vmu', 'VMungo1383G1698' => 'vmu', 'Zm00001eb012270' => 'zma', 'Zm00001eb054100' => 'zma', 'Zm00001eb063350' => 'zma', 'Zm00001eb328560' => 'zma', 'Zm00001eb342820' => 'zma', 'Zm00001eb362210' => 'zma', 'Zm00001eb397730' => 'zma', 'Zm00001eb399750' => 'zma' ) $gf_id = 'HOM05D000959' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000959' ) $data_identifier = 'HOM05D000959' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 5, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 5, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 10, 'mbi' => (int) 3, 'mco' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 2, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 3, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 11, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399750' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000959', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '622', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p07100' => 'bna', 'A03p11720' => 'bna', 'A05p08300' => 'bna', 'A05p13380' => 'bna', 'A09p54130' => 'bna', 'A10p16690' => 'bna', 'A10p16700' => 'bna', 'A10p33390' => 'bna', 'Aa31LG10G16020' => 'aar', 'Aa31LG1G11810' => 'aar', 'Aa31LG1G11830' => 'aar', 'Aa31LG1G22510' => 'aar', 'Aa31LG5G4890' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5793' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2310' => 'aag', 'Actinidia08499' => 'ach', 'Actinidia11262' => 'ach', 'Actinidia23926' => 'ach', 'Actinidia34420' => 'ach', 'Actinidia36970' => 'ach', 'Ah.02g111220' => 'amhyb', 'Ah.15g097750' => 'amhyb', 'AL4G27500' => 'aly', 'AL6G11470' => 'aly', 'AL8G35950' => 'aly', 'AL8G35960' => 'aly', 'AL8G35970' => 'aly', 'Aqoxy1G00912' => 'aox', 'Aqoxy2G02253' => 'aox', 'Aqoxy2G02411' => 'aox', 'Aqoxy5G00485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BZ66YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K8ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM4FUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6BF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HFV7XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25JBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0YNNV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MAKK6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P70IT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP2Z6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V61LZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YWP64R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3S9AI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7PGHH' => 'arhy', 'AT2G32150' => 'ath', 'AT3G62040' => 'ath', 'AT5G02230' => 'ath', 'AT5G59480' => 'ath', 'AT5G59490' => 'ath', 'ATR0332G060' => 'atr', 'ATR0559G190' => 'atr', 'ATR0693G294' => 'atr', 'Atru.chr3.3975' => 'acertr', 'Atru.chr3.3976' => 'acertr', 'Atru.chr3.3977' => 'acertr', 'Atru.chr4.2498' => 'acertr', 'Atru.chr5.838' => 'acertr', 'Atru.chr8.1990' => 'acertr', 'Atru.chr8.1991' => 'acertr', 'Atru.chr8.1992' => 'acertr', 'AUR62001759' => 'cqu', 'AUR62009545' => 'cqu', 'AUR62010474' => 'cqu', 'AUR62025820' => 'cqu', 'AUR62030422' => 'cqu', 'AUR62033605' => 'cqu', 'AUR62038615' => 'cqu', 'AUR62041347' => 'cqu', 'BcaB01g04574' => 'bca', 'BcaB02g09263' => 'bca', 'BcaB02g10453' => 'bca', 'BcaB05g22513' => 'bca', 'BcaB08g36253' => 'bca', 'BcaB08g36254' => 'bca', 'BcaC01g06519' => 'bca', 'BcaC02g11889' => 'bca', 'BcaC03g14010' => 'bca', 'BcaC03g18439' => 'bca', 'BcaC04g19765' => 'bca', 'BcaC09g48432' => 'bca', 'BcaNung07302' => 'bca', 'BolC2t06040H' => 'bol', 'BolC2t07346H' => 'bol', 'BolC3t13817H' => 'bol', 'BolC4t22625H' => 'bol', 'BolC4t23297H' => 'bol', 'BolC8t51278H' => 'bol', 'BolC9t58050H' => 'bol', 'BolC9t58051H' => 'bol', 'BolC9t60163H' => 'bol', 'BraA02t04712Z' => 'bra', 'BraA02t05791Z' => 'bra', 'BraA03t10483Z' => 'bra', 'BraA05t19795Z' => 'bra', 'BraA05t20276Z' => 'bra', 'BraA09t40827Z' => 'bra', 'BraA10t43750Z' => 'bra', 'BraA10t43751Z' => 'bra', 'BraA10t45370Z' => 'bra', 'C02p00400' => 'bna', 'C02p12460' => 'bna', 'C03p13680' => 'bna', 'C04p10270' => 'bna', 'C04p17500' => 'bna', 'C08p37010' => 'bna', 'C09p51880' => 'bna', 'C09p51890' => 'bna', 'C09p74300' => 'bna', 'CAN.G179.26' => 'can', 'CAN.G3384.1' => 'can', 'CAN.G394.68' => 'can', 'CAN.G907.13' => 'can', 'CANSAT11G0012' => 'cansat', 'CANSAT25G1586' => 'cansat', 'CANSAT35G0735' => 'cansat', 'CANSAT54G0556' => 'cansat', 'CANSAT64G0356' => 'cansat', 'CANSAT78G2042' => 'cansat', 'CARHR125920' => 'chi', 'CARHR131910' => 'chi', 'CARHR172390' => 'chi', 'CARHR211140' => 'chi', 'CARHR285850' => 'chi', 'CARHR285860' => 'chi', 'Carub.0004s1347' => 'cru', 'Carub.0004s1960' => 'cru', 'Carub.0005s2880' => 'cru', 'Carub.0006s0107' => 'cru', 'Carub.0008s2015' => 'cru', 'Carub.0008s2016' => 'cru', 'Carub.0008s2017' => 'cru', 'Ca_01315_v3' => 'car', 'Ca_05063_v3' => 'car', 'Ca_10231_v3' => 'car', 'Ca_10913_v3' => 'car', 'Ca_19156_v3' => 'car', 'Ca_23644_v3' => 'car', 'Ca_26735_v3' => 'car', 'Cc01_g13130' => 'ccan', 'Cc02_g21690' => 'ccan', 'Cc03_g03600' => 'ccan', 'Cc06_g02510' => 'ccan', 'CDE02G1265' => 'cde', 'CDE05G0415' => 'cde', 'CDE08G1082' => 'cde', 'Cfa005780' => 'cfa', 'Cfa011522' => 'cfa', 'Cfa011523' => 'cfa', 'Cfa015627' => 'cfa', 'Cfa017359' => 'cfa', 'Ciclev10005687m.g' => 'ccl', 'Ciclev10012173m.g' => 'ccl', 'Ciclev10021621m.g' => 'ccl', 'Ciclev10028968m.g' => 'ccl', 'Ciclev10029907m.g' => 'ccl', 'CiPaw.01G164800' => 'cil', 'CiPaw.07G083700' => 'cil', 'CiPaw.07G127000' => 'cil', 'CiPaw.07G136900' => 'cil', 'CiPaw.08G081700' => 'cil', 'CiPaw.09G194600' => 'cil', 'CiPaw.10G146500' => 'cil', 'CiPaw.13G091500' => 'cil', 'CiPaw.13G091600' => 'cil', 'ClCG00G003390' => 'cla', 'ClCG01G007220' => 'cla', 'ClCG03G001370' => 'cla', 'ClCG04G008100' => 'cla', 'ClCG06G006110' => 'cla', 'ClCG06G006130' => 'cla', 'ClCG10G021210' => 'cla', 'COL.COLO4_07648' => 'col', 'COL.COLO4_07650' => 'col', 'COL.COLO4_07651' => 'col', 'COL.COLO4_14780' => 'col', 'COL.COLO4_18546' => 'col', 'COL.COLO4_18547' => 'col', 'COL.COLO4_23103' => 'col', 'COL.COLO4_30419' => 'col', 'COL.COLO4_34232' => 'col', 'Cpa.g.sc169.20' => 'cpa', 'Cpa.g.sc57.45' => 'cpa', 'Cpa.g.sc58.124' => 'cpa', 'Cpa.g.sc58.125' => 'cpa', 'Cpa.g.sc81.118' => 'cpa', 'Cpa.g.sc81.119' => 'cpa', 'Cre12.g524700' => 'cre', 'CsaV3_1G034430' => 'csa', 'CsaV3_1G034440' => 'csa', 'CsaV3_1G034450' => 'csa', 'CsaV3_3G034830' => 'csa', 'CsaV3_4G025090' => 'csa', 'CsaV3_5G018660' => 'csa', 'CsaV3_6G038160' => 'csa', 'CSS0003447' => 'camsi', 'CSS0017840' => 'camsi', 'CSS0019260' => 'camsi', 'CSS0040375' => 'camsi', 'CSS0042533' => 'camsi', 'DCAR_005960' => 'dca', 'DCAR_012104' => 'dca', 'DCAR_012105' => 'dca', 'DCAR_012293' => 'dca', 'DCAR_015632' => 'dca', 'DCAR_024602' => 'dca', 'DCAR_028752' => 'dca', 'Dinv06261' => 'din', 'Dinv13982' => 'din', 'Dinv17029' => 'din', 'Dinv18463' => 'din', 'Dinv33181' => 'din', 'Dinv35585' => 'din', 'Dinv37161' => 'din', 'Dinv42977' => 'din', 'Dinv43122' => 'din', 'Dinv44517' => 'din', 'Duzib093G0256' => 'dzi', 'Duzib106G1254' => 'dzi', 'Duzib128G1789' => 'dzi', 'Duzib133G0633' => 'dzi', 'Duzib138G0510' => 'dzi', 'Duzib150G1084' => 'dzi', 'Duzib168G0488' => 'dzi', 'Duzib168G1523' => 'dzi', 'Duzib170G0133' => 'dzi', 'ECA234G1433' => 'eca', 'ECA236G1432' => 'eca', 'ECA236G2256' => 'eca', 'ECA236G2365' => 'eca', 'ECA236G4830' => 'eca', 'ECA248G1505' => 'eca', 'EL10Ac3g06431' => 'bvu', 'EL10Ac5g12577' => 'bvu', 'EL10Ac6g13533' => 'bvu', 'EL10Ac7g16045' => 'bvu', 'Eucgr.A01281' => 'egr', 'Eucgr.B02326' => 'egr', 'Eucgr.H03532' => 'egr', 'Eucgr.K00553' => 'egr', 'Eucgr.K03116' => 'egr', 'FAN02G3963' => 'fan', 'FAN05G0438' => 'fan', 'FAN09G2434' => 'fan', 'FAN12G3984' => 'fan', 'FAN14G0798' => 'fan', 'FAN17G0652' => 'fan', 'FAN19G1988' => 'fan', 'FAN22G0632' => 'fan', 'FAN23G0387' => 'fan', 'FAN26G1323' => 'fan', 'FAN28G0666' => 'fan', 'FvH4_1g26080' => 'fve', 'FvH4_3g36780' => 'fve', 'FvH4_4g15270' => 'fve', 'FvH4_6g13490' => 'fve', 'Glyma.01G098700' => 'gma', 'Glyma.03G065900' => 'gma', 'Glyma.03G073754' => 'gma', 'Glyma.03G073758' => 'gma', 'Glyma.03G083200' => 'gma', 'Glyma.03G225500' => 'gma', 'Glyma.05G037766' => 'gma', 'Glyma.07G133500' => 'gma', 'Glyma.10G139400' => 'gma', 'Glyma.10G248900' => 'gma', 'Glyma.11G137800' => 'gma', 'Glyma.12G061300' => 'gma', 'Glyma.13G337900' => 'gma', 'Glyma.15G036600' => 'gma', 'Glyma.18G182800' => 'gma', 'Glyma.19G222500' => 'gma', 'Glyma.20G144800' => 'gma', 'Gohir.A01G222000' => 'ghi', 'Gohir.A03G044000' => 'ghi', 'Gohir.A03G044100' => 'ghi', 'Gohir.A04G083100' => 'ghi', 'Gohir.A07G127200' => 'ghi', 'Gohir.A07G132400' => 'ghi', 'Gohir.A08G000700' => 'ghi', 'Gohir.A11G327300' => 'ghi', 'Gohir.D01G211500' => 'ghi', 'Gohir.D03G123400' => 'ghi', 'Gohir.D03G123500' => 'ghi', 'Gohir.D04G121800' => 'ghi', 'Gohir.D07G131500' => 'ghi', 'Gohir.D07G136600' => 'ghi', 'Gohir.D08G011600' => 'ghi', 'Gohir.D11G346200' => 'ghi', 'Gorai.001G142800' => 'gra', 'Gorai.001G148700' => 'gra', 'Gorai.002G257300' => 'gra', 'Gorai.003G130000' => 'gra', 'Gorai.003G130100' => 'gra', 'Gorai.004G005300' => 'gra', 'Gorai.007G376500' => 'gra', 'Gorai.012G104700' => 'gra', 'GSVIVG01017946001' => 'vvi', 'GSVIVG01024928001' => 'vvi', 'GSVIVG01028227001' => 'vvi', 'GSVIVG01034151001' => 'vvi', 'HanXRQChr05g0135031' => 'han', 'HanXRQChr05g0135041' => 'han', 'HanXRQChr05g0140021' => 'han', 'HanXRQChr06g0178981' => 'han', 'HanXRQChr07g0188251' => 'han', 'HanXRQChr08g0235311' => 'han', 'HanXRQChr09g0271011' => 'han', 'HanXRQChr10g0293321' => 'han', 'HanXRQChr13g0388171' => 'han', 'Haze_00916' => 'cav', 'Haze_05063' => 'cav', 'Haze_20814' => 'cav', 'Haze_24128' => 'cav', 'Hma1.2p1_0745F.1_g212010' => 'hma', 'Hma1.2p1_0757F.1_g213260' => 'hma', 'Hma1.2p1_0936F.1_g238840' => 'hma', 'Hma1.2p1_1735F.1_g299890' => 'hma', 'Hma1.2p1_1861F.1_g305685' => 'hma', 'HPP92_003397' => 'vpl', 'HPP92_012597' => 'vpl', 'HPP92_015520' => 'vpl', 'HPP92_015539' => 'vpl', 'HPP92_020373' => 'vpl', 'Hund04938' => 'sun', 'Hund10677' => 'sun', 'Hund11033' => 'sun', 'Hund12155' => 'sun', 'Lalb_Chr01g0022551' => 'lal', 'Lalb_Chr03g0042341' => 'lal', 'Lalb_Chr07g0192931' => 'lal', 'Lalb_Chr12g0209551' => 'lal', 'Lalb_Chr19g0125251' => 'lal', 'Lalb_Chr19g0137891' => 'lal', 'Lalb_Chr21g0304641' => 'lal', 'Lalb_Chr21g0309881' => 'lal', 'Lj1A5T12' => 'lonja', 'Lj1C148G10' => 'lonja', 'Lj2A93T83' => 'lonja', 'Lj3A738G68' => 'lonja', 'Lj3C966T1' => 'lonja', 'Lj3g0018958' => 'lja', 'Lj3g0021831' => 'lja', 'Lj3g0025443' => 'lja', 'Lj4g0026809' => 'lja', 'Lj5g0012558' => 'lja', 'Lj5g0021586' => 'lja', 'Lsat_1_v5_gn_5_156840' => 'lsa', 'Lsat_1_v5_gn_8_73460' => 'lsa', 'Lsat_1_v5_gn_8_73481' => 'lsa', 'Lsat_1_v5_gn_9_31601' => 'lsa', 'Lsat_1_v5_gn_9_77320' => 'lsa', 'Manes.01G171300' => 'mes', 'Manes.01G171400' => 'mes', 'Manes.01G236100' => 'mes', 'Manes.02G130500' => 'mes', 'Manes.02G130600' => 'mes', 'Manes.03G180200' => 'mes', 'Manes.05G007000' => 'mes', 'Manes.08G084400' => 'mes', 'Manes.09G092600' => 'mes', 'Manes.15G027900' => 'mes', 'MBI04_g40948_MAGBIO' => 'mbi', 'MBI14_g12123_MAGBIO' => 'mbi', 'MBI18_g28915_MAGBIO' => 'mbi', 'MCO09G053' => 'mco', 'MCO11G782' => 'mco', 'MCO15G215' => 'mco', 'MD03G1088500' => 'mdo', 'MD03G1088600' => 'mdo', 'MD04G1130800' => 'mdo', 'MD09G1291700' => 'mdo', 'MD11G1097500' => 'mdo', 'MD11G1097600' => 'mdo', 'MD12G1143900' => 'mdo', 'MD13G1191400' => 'mdo', 'MD16G1191500' => 'mdo', 'Medtr1g085570' => 'mtr', 'Medtr1g104610' => 'mtr', 'Medtr2g097520' => 'mtr', 'Medtr4g021800' => 'mtr', 'Medtr4g021825' => 'mtr', 'Medtr4g064270' => 'mtr', 'Medtr4g064380' => 'mtr', 'Medtr7g062150' => 'mtr', 'MELO3C003138.2' => 'cme', 'MELO3C005187.2' => 'cme', 'MELO3C009252.2' => 'cme', 'MELO3C014481.2' => 'cme', 'MELO3C020616.2' => 'cme', 'MELO3C020617.2' => 'cme', 'MELO3C020618.2' => 'cme', 'Migut.G00328' => 'egut', 'Migut.J00320' => 'egut', 'Migut.L01000' => 'egut', 'Migut.L01953' => 'egut', 'MSTRG.10253' => 'ama', 'MSTRG.19077' => 'ama', 'MSTRG.26780' => 'ama', 'MSTRG.4023' => 'ama', 'MSTRG.5655' => 'ama', 'MSTRG.9992' => 'ama', 'Nitab4.5_0000043g0310' => 'nta', 'Nitab4.5_0000463g0080' => 'nta', 'Nitab4.5_0000705g0170' => 'nta', 'Nitab4.5_0001326g0060' => 'nta', 'Nitab4.5_0001628g0030' => 'nta', 'Nitab4.5_0002103g0110' => 'nta', 'Nitab4.5_0002946g0030' => 'nta', 'Nitab4.5_0004639g0030' => 'nta', 'Nn2g11149' => 'nnu', 'Nn2g13389' => 'nnu', 'Nn4g25326' => 'nnu', 'Nn4g26290' => 'nnu', 'Nn5g29865' => 'nnu', 'Oeu004163.1' => 'oeu', 'Oeu006901.1' => 'oeu', 'Oeu010096.1' => 'oeu', 'Oeu024340.1' => 'oeu', 'Oeu048369.1' => 'oeu', 'Os01g0973000' => 'osa', 'Os03g0273800' => 'osa', 'Os03g0701200' => 'osa', 'Os03g0834050' => 'osa', 'Os07g0634400' => 'osa', 'Peaxi162Scf00092g01414' => 'pax', 'Peaxi162Scf00165g00818' => 'pax', 'Peaxi162Scf00309g00516' => 'pax', 'Peaxi162Scf00774g00218' => 'pax', 'PGR004G1824' => 'pgr', 'PGR004G2606' => 'pgr', 'PGR031G2716' => 'pgr', 'PGR102G2460' => 'pgr', 'PGR142G2599' => 'pgr', 'PGSC0003DMG400000843' => 'stu', 'PGSC0003DMG400008829' => 'stu', 'PGSC0003DMG400030418' => 'stu', 'PGSC0003DMG400031834' => 'stu', 'PGSC0003DMG401028300' => 'stu', 'PGSC0003DMG402028300' => 'stu', 'Phvul.001G219300' => 'pvu', 'Phvul.007G056000' => 'pvu', 'Phvul.007G208000' => 'pvu', 'Phvul.008G119500' => 'pvu', 'Phvul.010G011200' => 'pvu', 'Phvul.010G014800' => 'pvu', 'Phvul.011G062900' => 'pvu', 'Phvul.L007043' => 'pvu', 'Potri.001G242300' => 'ptr', 'Potri.002G185300' => 'ptr', 'Potri.006G086900' => 'ptr', 'Potri.008G151700' => 'ptr', 'Potri.009G033500' => 'ptr', 'Potri.010G089300' => 'ptr', 'Potri.014G110800' => 'ptr', 'Pp3c27_8130' => 'ppa', 'Pp3c6_27410' => 'ppa', 'PRCOL_00001659' => 'pco', 'PRCOL_00001927' => 'pco', 'PRCOL_00003649' => 'pco', 'Prupe.1G011600' => 'ppe', 'Prupe.3G000800' => 'ppe', 'Prupe.3G001100' => 'ppe', 'Prupe.6G072700' => 'ppe', 'Prupe.6G072800' => 'ppe', 'Prupe.6G257300' => 'ppe', 'Prupe.8G033000' => 'ppe', 'Psat0s2633g0080' => 'psa', 'Psat0s3396g0080' => 'psa', 'Psat0s3396g0200' => 'psa', 'Psat3g139080' => 'psa', 'Psat5g285080' => 'psa', 'Psat6g157760' => 'psa', 'Psat6g208440' => 'psa', 'Psat7g215320' => 'psa', 'Psat7g215400' => 'psa', 'Psat7g235600' => 'psa', 'Psat7g235760' => 'psa', 'PSO063G4603' => 'pso', 'PSO210G0182' => 'pso', 'PSO210G0196' => 'pso', 'PSO339G0394' => 'pso', 'PSO339G4127' => 'pso', 'PSO513G0064' => 'pso', 'PSO761G0079' => 'pso', 'QL01p031003' => 'qlo', 'QL01p031078' => 'qlo', 'QL06p003004' => 'qlo', 'QL07p048731' => 'qlo', 'QL09p037427' => 'qlo', 'RcHm_v2.0_Chr3g0466361' => 'rch', 'RcHm_v2.0_Chr3g0485571' => 'rch', 'RcHm_v2.0_Chr4g0416551' => 'rch', 'RcHm_v2.0_Chr5g0065831' => 'rch', 'Rhsim01G0230500' => 'rsi', 'Rhsim05G0194000' => 'rsi', 'Rhsim08G0250400' => 'rsi', 'Sabra02G0131000' => 'sbr', 'Sabra06G0066300' => 'sbr', 'Sabra08G0115500' => 'sbr', 'Sabra09G0023900' => 'sbr', 'Sabra10G0054000' => 'sbr', 'Sabra14G0081500' => 'sbr', 'Sabra16G0147100' => 'sbr', 'SalBow2G2957' => 'sbo', 'SalBow4G3320' => 'sbo', 'SalBow8G1894' => 'sbo', 'Sc07g0007950' => 'sci', 'Sc12g0001360' => 'sci', 'Sc13g0004330' => 'sci', 'Sc20g0005010' => 'sci', 'Sed0000361' => 'sed', 'Sed0001706' => 'sed', 'Sed0002422' => 'sed', 'Sed0004029' => 'sed', 'Sed0004602' => 'sed', 'Sed0004943' => 'sed', 'Sed0008646' => 'sed', 'Sed0023313' => 'sed', 'Sed0024843' => 'sed', 'SEGI_00081' => 'sgi', 'SEGI_00947' => 'sgi', 'SEGI_04046' => 'sgi', 'SEGI_06880' => 'sgi', 'SEGI_09736' => 'sgi', 'SEGI_12741' => 'sgi', 'SEGI_14530' => 'sgi', 'SEGI_20705' => 'sgi', 'SEGI_26088' => 'sgi', 'SEGI_28323' => 'sgi', 'SEGI_33343' => 'sgi', 'SGA_v2.0_scaffold126G33775' => 'sas', 'SGA_v2.0_scaffold2G01337' => 'sas', 'SGA_v2.0_scaffold38G15006' => 'sas', 'SGA_v2.0_scaffold39G15264' => 'sas', 'SGA_v2.0_scaffold453G51880' => 'sas', 'SHI12696' => 'shi', 'SMO367G1096' => 'smo', 'Solyc01g068630.3' => 'sly', 'Solyc05g011880.3' => 'sly', 'Solyc06g076300.3' => 'sly', 'Solyc09g010940.4' => 'sly', 'Solyc09g075890.3' => 'sly', 'Sopen01g030560' => 'spe', 'Sopen05g006630' => 'spe', 'Sopen06g032720' => 'spe', 'Sopen09g005660' => 'spe', 'Sopen09g030690' => 'spe', 'Sp4g14540' => 'spa', 'Sp4g20030' => 'spa', 'Sp5g01320' => 'spa', 'Sp6g21170' => 'spa', 'Sp6g21180' => 'spa', 'Sp6g21190' => 'spa', 'Sp6g40220' => 'spa', 'TAR362G0122' => 'tar', 'TAR362G1338' => 'tar', 'TAR369G0590' => 'tar', 'TAR371G0824' => 'tar', 'TAR622G1429' => 'tar', 'TAR623G0734' => 'tar', 'TAR625G0441' => 'tar', 'TAR629G0976' => 'tar', 'TAR633G1195' => 'tar', 'TAR636G2660' => 'tar', 'THA.LOC104799440' => 'tha', 'THA.LOC104800966' => 'tha', 'THA.LOC104806559' => 'tha', 'THA.LOC104810765' => 'tha', 'THA.LOC104816266' => 'tha', 'THA.LOC104817419' => 'tha', 'THA.LOC104827021' => 'tha', 'Thecc.01G327400' => 'tca', 'Thecc.04G229200' => 'tca', 'Thecc.05G037400' => 'tca', 'Thecc.09G318600' => 'tca', 'Thecc.09G318700' => 'tca', 'Thhalv10006238m.g' => 'esa', 'Thhalv10014321m.g' => 'esa', 'Thhalv10014335m.g' => 'esa', 'Thhalv10015826m.g' => 'esa', 'Thhalv10017107m.g' => 'esa', 'Thhalv10017180m.g' => 'esa', 'Thhalv10029339m.g' => 'esa', 'TPR.G1699' => 'tpr', 'TPR.G23609' => 'tpr', 'TPR.G3081' => 'tpr', 'TPR.G40397' => 'tpr', 'TPR.G5522' => 'tpr', 'TPR.G5618' => 'tpr', 'TPR.G5626' => 'tpr', 'TWI09G1632' => 'twi', 'TWI23G1230' => 'twi', 'TWI53G1064' => 'twi', 'TWI59G0751' => 'twi', 'TWI74G0947' => 'twi', 'TWI77G0337' => 'twi', 'TWI79G1254' => 'twi', 'unitig_0.g2341' => 'ugi', 'unitig_26.g10006' => 'ugi', 'unitig_26.g10008' => 'ugi', 'unitig_26.g9192' => 'ugi', 'vmacro14547' => 'vma', 'vmacro15333' => 'vma', 'vmacro18743' => 'vma', 'vmacro20166' => 'vma', 'VMungo0331G0523' => 'vmu', 'VMungo0331G1202' => 'vmu', 'VMungo0720G1228' => 'vmu', 'VMungo0720G1514' => 'vmu', 'VMungo1080G0169' => 'vmu', 'VMungo1127G1475' => 'vmu', 'VMungo1383G1208' => 'vmu', 'VMungo1383G1698' => 'vmu', 'Zm00001eb012270' => 'zma', 'Zm00001eb054100' => 'zma', 'Zm00001eb063350' => 'zma', 'Zm00001eb328560' => 'zma', 'Zm00001eb342820' => 'zma', 'Zm00001eb362210' => 'zma', 'Zm00001eb397730' => 'zma', 'Zm00001eb399750' => 'zma' ), 'gf_id' => 'HOM05D000959', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000959' ), 'data_identifier' => 'HOM05D000959', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000959', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '622', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p07100' => 'bna', 'A03p11720' => 'bna', 'A05p08300' => 'bna', 'A05p13380' => 'bna', 'A09p54130' => 'bna', 'A10p16690' => 'bna', 'A10p16700' => 'bna', 'A10p33390' => 'bna', 'Aa31LG10G16020' => 'aar', 'Aa31LG1G11810' => 'aar', 'Aa31LG1G11830' => 'aar', 'Aa31LG1G22510' => 'aar', 'Aa31LG5G4890' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5793' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2310' => 'aag', 'Actinidia08499' => 'ach', 'Actinidia11262' => 'ach', 'Actinidia23926' => 'ach', 'Actinidia34420' => 'ach', 'Actinidia36970' => 'ach', 'Ah.02g111220' => 'amhyb', 'Ah.15g097750' => 'amhyb', 'AL4G27500' => 'aly', 'AL6G11470' => 'aly', 'AL8G35950' => 'aly', 'AL8G35960' => 'aly', 'AL8G35970' => 'aly', 'Aqoxy1G00912' => 'aox', 'Aqoxy2G02253' => 'aox', 'Aqoxy2G02411' => 'aox', 'Aqoxy5G00485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BZ66YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K8ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM4FUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6BF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HFV7XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25JBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0YNNV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MAKK6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P70IT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP2Z6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V61LZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YWP64R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3S9AI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7PGHH' => 'arhy', 'AT2G32150' => 'ath', 'AT3G62040' => 'ath', 'AT5G02230' => 'ath', 'AT5G59480' => 'ath', 'AT5G59490' => 'ath', 'ATR0332G060' => 'atr', 'ATR0559G190' => 'atr', 'ATR0693G294' => 'atr', 'Atru.chr3.3975' => 'acertr', 'Atru.chr3.3976' => 'acertr', 'Atru.chr3.3977' => 'acertr', 'Atru.chr4.2498' => 'acertr', 'Atru.chr5.838' => 'acertr', 'Atru.chr8.1990' => 'acertr', 'Atru.chr8.1991' => 'acertr', 'Atru.chr8.1992' => 'acertr', 'AUR62001759' => 'cqu', 'AUR62009545' => 'cqu', 'AUR62010474' => 'cqu', 'AUR62025820' => 'cqu', 'AUR62030422' => 'cqu', 'AUR62033605' => 'cqu', 'AUR62038615' => 'cqu', 'AUR62041347' => 'cqu', 'BcaB01g04574' => 'bca', 'BcaB02g09263' => 'bca', 'BcaB02g10453' => 'bca', 'BcaB05g22513' => 'bca', 'BcaB08g36253' => 'bca', 'BcaB08g36254' => 'bca', 'BcaC01g06519' => 'bca', 'BcaC02g11889' => 'bca', 'BcaC03g14010' => 'bca', 'BcaC03g18439' => 'bca', 'BcaC04g19765' => 'bca', 'BcaC09g48432' => 'bca', 'BcaNung07302' => 'bca', 'BolC2t06040H' => 'bol', 'BolC2t07346H' => 'bol', 'BolC3t13817H' => 'bol', 'BolC4t22625H' => 'bol', 'BolC4t23297H' => 'bol', 'BolC8t51278H' => 'bol', 'BolC9t58050H' => 'bol', 'BolC9t58051H' => 'bol', 'BolC9t60163H' => 'bol', 'BraA02t04712Z' => 'bra', 'BraA02t05791Z' => 'bra', 'BraA03t10483Z' => 'bra', 'BraA05t19795Z' => 'bra', 'BraA05t20276Z' => 'bra', 'BraA09t40827Z' => 'bra', 'BraA10t43750Z' => 'bra', 'BraA10t43751Z' => 'bra', 'BraA10t45370Z' => 'bra', 'C02p00400' => 'bna', 'C02p12460' => 'bna', 'C03p13680' => 'bna', 'C04p10270' => 'bna', 'C04p17500' => 'bna', 'C08p37010' => 'bna', 'C09p51880' => 'bna', 'C09p51890' => 'bna', 'C09p74300' => 'bna', 'CAN.G179.26' => 'can', 'CAN.G3384.1' => 'can', 'CAN.G394.68' => 'can', 'CAN.G907.13' => 'can', 'CANSAT11G0012' => 'cansat', 'CANSAT25G1586' => 'cansat', 'CANSAT35G0735' => 'cansat', 'CANSAT54G0556' => 'cansat', 'CANSAT64G0356' => 'cansat', 'CANSAT78G2042' => 'cansat', 'CARHR125920' => 'chi', 'CARHR131910' => 'chi', 'CARHR172390' => 'chi', 'CARHR211140' => 'chi', 'CARHR285850' => 'chi', 'CARHR285860' => 'chi', 'Carub.0004s1347' => 'cru', 'Carub.0004s1960' => 'cru', 'Carub.0005s2880' => 'cru', 'Carub.0006s0107' => 'cru', 'Carub.0008s2015' => 'cru', 'Carub.0008s2016' => 'cru', 'Carub.0008s2017' => 'cru', 'Ca_01315_v3' => 'car', 'Ca_05063_v3' => 'car', 'Ca_10231_v3' => 'car', 'Ca_10913_v3' => 'car', 'Ca_19156_v3' => 'car', 'Ca_23644_v3' => 'car', 'Ca_26735_v3' => 'car', 'Cc01_g13130' => 'ccan', 'Cc02_g21690' => 'ccan', 'Cc03_g03600' => 'ccan', 'Cc06_g02510' => 'ccan', 'CDE02G1265' => 'cde', 'CDE05G0415' => 'cde', 'CDE08G1082' => 'cde', 'Cfa005780' => 'cfa', 'Cfa011522' => 'cfa', 'Cfa011523' => 'cfa', 'Cfa015627' => 'cfa', 'Cfa017359' => 'cfa', 'Ciclev10005687m.g' => 'ccl', 'Ciclev10012173m.g' => 'ccl', 'Ciclev10021621m.g' => 'ccl', 'Ciclev10028968m.g' => 'ccl', 'Ciclev10029907m.g' => 'ccl', 'CiPaw.01G164800' => 'cil', 'CiPaw.07G083700' => 'cil', 'CiPaw.07G127000' => 'cil', 'CiPaw.07G136900' => 'cil', 'CiPaw.08G081700' => 'cil', 'CiPaw.09G194600' => 'cil', 'CiPaw.10G146500' => 'cil', 'CiPaw.13G091500' => 'cil', 'CiPaw.13G091600' => 'cil', 'ClCG00G003390' => 'cla', 'ClCG01G007220' => 'cla', 'ClCG03G001370' => 'cla', 'ClCG04G008100' => 'cla', 'ClCG06G006110' => 'cla', 'ClCG06G006130' => 'cla', 'ClCG10G021210' => 'cla', 'COL.COLO4_07648' => 'col', 'COL.COLO4_07650' => 'col', 'COL.COLO4_07651' => 'col', 'COL.COLO4_14780' => 'col', 'COL.COLO4_18546' => 'col', 'COL.COLO4_18547' => 'col', 'COL.COLO4_23103' => 'col', 'COL.COLO4_30419' => 'col', 'COL.COLO4_34232' => 'col', 'Cpa.g.sc169.20' => 'cpa', 'Cpa.g.sc57.45' => 'cpa', 'Cpa.g.sc58.124' => 'cpa', 'Cpa.g.sc58.125' => 'cpa', 'Cpa.g.sc81.118' => 'cpa', 'Cpa.g.sc81.119' => 'cpa', 'Cre12.g524700' => 'cre', 'CsaV3_1G034430' => 'csa', 'CsaV3_1G034440' => 'csa', 'CsaV3_1G034450' => 'csa', 'CsaV3_3G034830' => 'csa', 'CsaV3_4G025090' => 'csa', 'CsaV3_5G018660' => 'csa', 'CsaV3_6G038160' => 'csa', 'CSS0003447' => 'camsi', 'CSS0017840' => 'camsi', 'CSS0019260' => 'camsi', 'CSS0040375' => 'camsi', 'CSS0042533' => 'camsi', 'DCAR_005960' => 'dca', 'DCAR_012104' => 'dca', 'DCAR_012105' => 'dca', 'DCAR_012293' => 'dca', 'DCAR_015632' => 'dca', 'DCAR_024602' => 'dca', 'DCAR_028752' => 'dca', 'Dinv06261' => 'din', 'Dinv13982' => 'din', 'Dinv17029' => 'din', 'Dinv18463' => 'din', 'Dinv33181' => 'din', 'Dinv35585' => 'din', 'Dinv37161' => 'din', 'Dinv42977' => 'din', 'Dinv43122' => 'din', 'Dinv44517' => 'din', 'Duzib093G0256' => 'dzi', 'Duzib106G1254' => 'dzi', 'Duzib128G1789' => 'dzi', 'Duzib133G0633' => 'dzi', 'Duzib138G0510' => 'dzi', 'Duzib150G1084' => 'dzi', 'Duzib168G0488' => 'dzi', 'Duzib168G1523' => 'dzi', 'Duzib170G0133' => 'dzi', 'ECA234G1433' => 'eca', 'ECA236G1432' => 'eca', 'ECA236G2256' => 'eca', 'ECA236G2365' => 'eca', 'ECA236G4830' => 'eca', 'ECA248G1505' => 'eca', 'EL10Ac3g06431' => 'bvu', 'EL10Ac5g12577' => 'bvu', 'EL10Ac6g13533' => 'bvu', 'EL10Ac7g16045' => 'bvu', 'Eucgr.A01281' => 'egr', 'Eucgr.B02326' => 'egr', 'Eucgr.H03532' => 'egr', 'Eucgr.K00553' => 'egr', 'Eucgr.K03116' => 'egr', 'FAN02G3963' => 'fan', 'FAN05G0438' => 'fan', 'FAN09G2434' => 'fan', 'FAN12G3984' => 'fan', 'FAN14G0798' => 'fan', 'FAN17G0652' => 'fan', 'FAN19G1988' => 'fan', 'FAN22G0632' => 'fan', 'FAN23G0387' => 'fan', 'FAN26G1323' => 'fan', 'FAN28G0666' => 'fan', 'FvH4_1g26080' => 'fve', 'FvH4_3g36780' => 'fve', 'FvH4_4g15270' => 'fve', 'FvH4_6g13490' => 'fve', 'Glyma.01G098700' => 'gma', 'Glyma.03G065900' => 'gma', 'Glyma.03G073754' => 'gma', 'Glyma.03G073758' => 'gma', 'Glyma.03G083200' => 'gma', 'Glyma.03G225500' => 'gma', 'Glyma.05G037766' => 'gma', 'Glyma.07G133500' => 'gma', 'Glyma.10G139400' => 'gma', 'Glyma.10G248900' => 'gma', 'Glyma.11G137800' => 'gma', 'Glyma.12G061300' => 'gma', 'Glyma.13G337900' => 'gma', 'Glyma.15G036600' => 'gma', 'Glyma.18G182800' => 'gma', 'Glyma.19G222500' => 'gma', 'Glyma.20G144800' => 'gma', 'Gohir.A01G222000' => 'ghi', 'Gohir.A03G044000' => 'ghi', 'Gohir.A03G044100' => 'ghi', 'Gohir.A04G083100' => 'ghi', 'Gohir.A07G127200' => 'ghi', 'Gohir.A07G132400' => 'ghi', 'Gohir.A08G000700' => 'ghi', 'Gohir.A11G327300' => 'ghi', 'Gohir.D01G211500' => 'ghi', 'Gohir.D03G123400' => 'ghi', 'Gohir.D03G123500' => 'ghi', 'Gohir.D04G121800' => 'ghi', 'Gohir.D07G131500' => 'ghi', 'Gohir.D07G136600' => 'ghi', 'Gohir.D08G011600' => 'ghi', 'Gohir.D11G346200' => 'ghi', 'Gorai.001G142800' => 'gra', 'Gorai.001G148700' => 'gra', 'Gorai.002G257300' => 'gra', 'Gorai.003G130000' => 'gra', 'Gorai.003G130100' => 'gra', 'Gorai.004G005300' => 'gra', 'Gorai.007G376500' => 'gra', 'Gorai.012G104700' => 'gra', 'GSVIVG01017946001' => 'vvi', 'GSVIVG01024928001' => 'vvi', 'GSVIVG01028227001' => 'vvi', 'GSVIVG01034151001' => 'vvi', 'HanXRQChr05g0135031' => 'han', 'HanXRQChr05g0135041' => 'han', 'HanXRQChr05g0140021' => 'han', 'HanXRQChr06g0178981' => 'han', 'HanXRQChr07g0188251' => 'han', 'HanXRQChr08g0235311' => 'han', 'HanXRQChr09g0271011' => 'han', 'HanXRQChr10g0293321' => 'han', 'HanXRQChr13g0388171' => 'han', 'Haze_00916' => 'cav', 'Haze_05063' => 'cav', 'Haze_20814' => 'cav', 'Haze_24128' => 'cav', 'Hma1.2p1_0745F.1_g212010' => 'hma', 'Hma1.2p1_0757F.1_g213260' => 'hma', 'Hma1.2p1_0936F.1_g238840' => 'hma', 'Hma1.2p1_1735F.1_g299890' => 'hma', 'Hma1.2p1_1861F.1_g305685' => 'hma', 'HPP92_003397' => 'vpl', 'HPP92_012597' => 'vpl', 'HPP92_015520' => 'vpl', 'HPP92_015539' => 'vpl', 'HPP92_020373' => 'vpl', 'Hund04938' => 'sun', 'Hund10677' => 'sun', 'Hund11033' => 'sun', 'Hund12155' => 'sun', 'Lalb_Chr01g0022551' => 'lal', 'Lalb_Chr03g0042341' => 'lal', 'Lalb_Chr07g0192931' => 'lal', 'Lalb_Chr12g0209551' => 'lal', 'Lalb_Chr19g0125251' => 'lal', 'Lalb_Chr19g0137891' => 'lal', 'Lalb_Chr21g0304641' => 'lal', 'Lalb_Chr21g0309881' => 'lal', 'Lj1A5T12' => 'lonja', 'Lj1C148G10' => 'lonja', 'Lj2A93T83' => 'lonja', 'Lj3A738G68' => 'lonja', 'Lj3C966T1' => 'lonja', 'Lj3g0018958' => 'lja', 'Lj3g0021831' => 'lja', 'Lj3g0025443' => 'lja', 'Lj4g0026809' => 'lja', 'Lj5g0012558' => 'lja', 'Lj5g0021586' => 'lja', 'Lsat_1_v5_gn_5_156840' => 'lsa', 'Lsat_1_v5_gn_8_73460' => 'lsa', 'Lsat_1_v5_gn_8_73481' => 'lsa', 'Lsat_1_v5_gn_9_31601' => 'lsa', 'Lsat_1_v5_gn_9_77320' => 'lsa', 'Manes.01G171300' => 'mes', 'Manes.01G171400' => 'mes', 'Manes.01G236100' => 'mes', 'Manes.02G130500' => 'mes', 'Manes.02G130600' => 'mes', 'Manes.03G180200' => 'mes', 'Manes.05G007000' => 'mes', 'Manes.08G084400' => 'mes', 'Manes.09G092600' => 'mes', 'Manes.15G027900' => 'mes', 'MBI04_g40948_MAGBIO' => 'mbi', 'MBI14_g12123_MAGBIO' => 'mbi', 'MBI18_g28915_MAGBIO' => 'mbi', 'MCO09G053' => 'mco', 'MCO11G782' => 'mco', 'MCO15G215' => 'mco', 'MD03G1088500' => 'mdo', 'MD03G1088600' => 'mdo', 'MD04G1130800' => 'mdo', 'MD09G1291700' => 'mdo', 'MD11G1097500' => 'mdo', 'MD11G1097600' => 'mdo', 'MD12G1143900' => 'mdo', 'MD13G1191400' => 'mdo', 'MD16G1191500' => 'mdo', 'Medtr1g085570' => 'mtr', 'Medtr1g104610' => 'mtr', 'Medtr2g097520' => 'mtr', 'Medtr4g021800' => 'mtr', 'Medtr4g021825' => 'mtr', 'Medtr4g064270' => 'mtr', 'Medtr4g064380' => 'mtr', 'Medtr7g062150' => 'mtr', 'MELO3C003138.2' => 'cme', 'MELO3C005187.2' => 'cme', 'MELO3C009252.2' => 'cme', 'MELO3C014481.2' => 'cme', 'MELO3C020616.2' => 'cme', 'MELO3C020617.2' => 'cme', 'MELO3C020618.2' => 'cme', 'Migut.G00328' => 'egut', 'Migut.J00320' => 'egut', 'Migut.L01000' => 'egut', 'Migut.L01953' => 'egut', 'MSTRG.10253' => 'ama', 'MSTRG.19077' => 'ama', 'MSTRG.26780' => 'ama', 'MSTRG.4023' => 'ama', 'MSTRG.5655' => 'ama', 'MSTRG.9992' => 'ama', 'Nitab4.5_0000043g0310' => 'nta', 'Nitab4.5_0000463g0080' => 'nta', 'Nitab4.5_0000705g0170' => 'nta', 'Nitab4.5_0001326g0060' => 'nta', 'Nitab4.5_0001628g0030' => 'nta', 'Nitab4.5_0002103g0110' => 'nta', 'Nitab4.5_0002946g0030' => 'nta', 'Nitab4.5_0004639g0030' => 'nta', 'Nn2g11149' => 'nnu', 'Nn2g13389' => 'nnu', 'Nn4g25326' => 'nnu', 'Nn4g26290' => 'nnu', 'Nn5g29865' => 'nnu', 'Oeu004163.1' => 'oeu', 'Oeu006901.1' => 'oeu', 'Oeu010096.1' => 'oeu', 'Oeu024340.1' => 'oeu', 'Oeu048369.1' => 'oeu', 'Os01g0973000' => 'osa', 'Os03g0273800' => 'osa', 'Os03g0701200' => 'osa', 'Os03g0834050' => 'osa', 'Os07g0634400' => 'osa', 'Peaxi162Scf00092g01414' => 'pax', 'Peaxi162Scf00165g00818' => 'pax', 'Peaxi162Scf00309g00516' => 'pax', 'Peaxi162Scf00774g00218' => 'pax', 'PGR004G1824' => 'pgr', 'PGR004G2606' => 'pgr', 'PGR031G2716' => 'pgr', 'PGR102G2460' => 'pgr', 'PGR142G2599' => 'pgr', 'PGSC0003DMG400000843' => 'stu', 'PGSC0003DMG400008829' => 'stu', 'PGSC0003DMG400030418' => 'stu', 'PGSC0003DMG400031834' => 'stu', 'PGSC0003DMG401028300' => 'stu', 'PGSC0003DMG402028300' => 'stu', 'Phvul.001G219300' => 'pvu', 'Phvul.007G056000' => 'pvu', 'Phvul.007G208000' => 'pvu', 'Phvul.008G119500' => 'pvu', 'Phvul.010G011200' => 'pvu', 'Phvul.010G014800' => 'pvu', 'Phvul.011G062900' => 'pvu', 'Phvul.L007043' => 'pvu', 'Potri.001G242300' => 'ptr', 'Potri.002G185300' => 'ptr', 'Potri.006G086900' => 'ptr', 'Potri.008G151700' => 'ptr', 'Potri.009G033500' => 'ptr', 'Potri.010G089300' => 'ptr', 'Potri.014G110800' => 'ptr', 'Pp3c27_8130' => 'ppa', 'Pp3c6_27410' => 'ppa', 'PRCOL_00001659' => 'pco', 'PRCOL_00001927' => 'pco', 'PRCOL_00003649' => 'pco', 'Prupe.1G011600' => 'ppe', 'Prupe.3G000800' => 'ppe', 'Prupe.3G001100' => 'ppe', 'Prupe.6G072700' => 'ppe', 'Prupe.6G072800' => 'ppe', 'Prupe.6G257300' => 'ppe', 'Prupe.8G033000' => 'ppe', 'Psat0s2633g0080' => 'psa', 'Psat0s3396g0080' => 'psa', 'Psat0s3396g0200' => 'psa', 'Psat3g139080' => 'psa', 'Psat5g285080' => 'psa', 'Psat6g157760' => 'psa', 'Psat6g208440' => 'psa', 'Psat7g215320' => 'psa', 'Psat7g215400' => 'psa', 'Psat7g235600' => 'psa', 'Psat7g235760' => 'psa', 'PSO063G4603' => 'pso', 'PSO210G0182' => 'pso', 'PSO210G0196' => 'pso', 'PSO339G0394' => 'pso', 'PSO339G4127' => 'pso', 'PSO513G0064' => 'pso', 'PSO761G0079' => 'pso', 'QL01p031003' => 'qlo', 'QL01p031078' => 'qlo', 'QL06p003004' => 'qlo', 'QL07p048731' => 'qlo', 'QL09p037427' => 'qlo', 'RcHm_v2.0_Chr3g0466361' => 'rch', 'RcHm_v2.0_Chr3g0485571' => 'rch', 'RcHm_v2.0_Chr4g0416551' => 'rch', 'RcHm_v2.0_Chr5g0065831' => 'rch', 'Rhsim01G0230500' => 'rsi', 'Rhsim05G0194000' => 'rsi', 'Rhsim08G0250400' => 'rsi', 'Sabra02G0131000' => 'sbr', 'Sabra06G0066300' => 'sbr', 'Sabra08G0115500' => 'sbr', 'Sabra09G0023900' => 'sbr', 'Sabra10G0054000' => 'sbr', 'Sabra14G0081500' => 'sbr', 'Sabra16G0147100' => 'sbr', 'SalBow2G2957' => 'sbo', 'SalBow4G3320' => 'sbo', 'SalBow8G1894' => 'sbo', 'Sc07g0007950' => 'sci', 'Sc12g0001360' => 'sci', 'Sc13g0004330' => 'sci', 'Sc20g0005010' => 'sci', 'Sed0000361' => 'sed', 'Sed0001706' => 'sed', 'Sed0002422' => 'sed', 'Sed0004029' => 'sed', 'Sed0004602' => 'sed', 'Sed0004943' => 'sed', 'Sed0008646' => 'sed', 'Sed0023313' => 'sed', 'Sed0024843' => 'sed', 'SEGI_00081' => 'sgi', 'SEGI_00947' => 'sgi', 'SEGI_04046' => 'sgi', 'SEGI_06880' => 'sgi', 'SEGI_09736' => 'sgi', 'SEGI_12741' => 'sgi', 'SEGI_14530' => 'sgi', 'SEGI_20705' => 'sgi', 'SEGI_26088' => 'sgi', 'SEGI_28323' => 'sgi', 'SEGI_33343' => 'sgi', 'SGA_v2.0_scaffold126G33775' => 'sas', 'SGA_v2.0_scaffold2G01337' => 'sas', 'SGA_v2.0_scaffold38G15006' => 'sas', 'SGA_v2.0_scaffold39G15264' => 'sas', 'SGA_v2.0_scaffold453G51880' => 'sas', 'SHI12696' => 'shi', 'SMO367G1096' => 'smo', 'Solyc01g068630.3' => 'sly', 'Solyc05g011880.3' => 'sly', 'Solyc06g076300.3' => 'sly', 'Solyc09g010940.4' => 'sly', 'Solyc09g075890.3' => 'sly', 'Sopen01g030560' => 'spe', 'Sopen05g006630' => 'spe', 'Sopen06g032720' => 'spe', 'Sopen09g005660' => 'spe', 'Sopen09g030690' => 'spe', 'Sp4g14540' => 'spa', 'Sp4g20030' => 'spa', 'Sp5g01320' => 'spa', 'Sp6g21170' => 'spa', 'Sp6g21180' => 'spa', 'Sp6g21190' => 'spa', 'Sp6g40220' => 'spa', 'TAR362G0122' => 'tar', 'TAR362G1338' => 'tar', 'TAR369G0590' => 'tar', 'TAR371G0824' => 'tar', 'TAR622G1429' => 'tar', 'TAR623G0734' => 'tar', 'TAR625G0441' => 'tar', 'TAR629G0976' => 'tar', 'TAR633G1195' => 'tar', 'TAR636G2660' => 'tar', 'THA.LOC104799440' => 'tha', 'THA.LOC104800966' => 'tha', 'THA.LOC104806559' => 'tha', 'THA.LOC104810765' => 'tha', 'THA.LOC104816266' => 'tha', 'THA.LOC104817419' => 'tha', 'THA.LOC104827021' => 'tha', 'Thecc.01G327400' => 'tca', 'Thecc.04G229200' => 'tca', 'Thecc.05G037400' => 'tca', 'Thecc.09G318600' => 'tca', 'Thecc.09G318700' => 'tca', 'Thhalv10006238m.g' => 'esa', 'Thhalv10014321m.g' => 'esa', 'Thhalv10014335m.g' => 'esa', 'Thhalv10015826m.g' => 'esa', 'Thhalv10017107m.g' => 'esa', 'Thhalv10017180m.g' => 'esa', 'Thhalv10029339m.g' => 'esa', 'TPR.G1699' => 'tpr', 'TPR.G23609' => 'tpr', 'TPR.G3081' => 'tpr', 'TPR.G40397' => 'tpr', 'TPR.G5522' => 'tpr', 'TPR.G5618' => 'tpr', 'TPR.G5626' => 'tpr', 'TWI09G1632' => 'twi', 'TWI23G1230' => 'twi', 'TWI53G1064' => 'twi', 'TWI59G0751' => 'twi', 'TWI74G0947' => 'twi', 'TWI77G0337' => 'twi', 'TWI79G1254' => 'twi', 'unitig_0.g2341' => 'ugi', 'unitig_26.g10006' => 'ugi', 'unitig_26.g10008' => 'ugi', 'unitig_26.g9192' => 'ugi', 'vmacro14547' => 'vma', 'vmacro15333' => 'vma', 'vmacro18743' => 'vma', 'vmacro20166' => 'vma', 'VMungo0331G0523' => 'vmu', 'VMungo0331G1202' => 'vmu', 'VMungo0720G1228' => 'vmu', 'VMungo0720G1514' => 'vmu', 'VMungo1080G0169' => 'vmu', 'VMungo1127G1475' => 'vmu', 'VMungo1383G1208' => 'vmu', 'VMungo1383G1698' => 'vmu', 'Zm00001eb012270' => 'zma', 'Zm00001eb054100' => 'zma', 'Zm00001eb063350' => 'zma', 'Zm00001eb328560' => 'zma', 'Zm00001eb342820' => 'zma', 'Zm00001eb362210' => 'zma', 'Zm00001eb397730' => 'zma', 'Zm00001eb399750' => 'zma' ) $gf_id = 'HOM05D000959' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000959' ) $data_identifier = 'HOM05D000959' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 5, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 5, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 10, 'mbi' => (int) 3, 'mco' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 2, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 3, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 11, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399750' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000959', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '622', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p07100' => 'bna', 'A03p11720' => 'bna', 'A05p08300' => 'bna', 'A05p13380' => 'bna', 'A09p54130' => 'bna', 'A10p16690' => 'bna', 'A10p16700' => 'bna', 'A10p33390' => 'bna', 'Aa31LG10G16020' => 'aar', 'Aa31LG1G11810' => 'aar', 'Aa31LG1G11830' => 'aar', 'Aa31LG1G22510' => 'aar', 'Aa31LG5G4890' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5793' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2310' => 'aag', 'Actinidia08499' => 'ach', 'Actinidia11262' => 'ach', 'Actinidia23926' => 'ach', 'Actinidia34420' => 'ach', 'Actinidia36970' => 'ach', 'Ah.02g111220' => 'amhyb', 'Ah.15g097750' => 'amhyb', 'AL4G27500' => 'aly', 'AL6G11470' => 'aly', 'AL8G35950' => 'aly', 'AL8G35960' => 'aly', 'AL8G35970' => 'aly', 'Aqoxy1G00912' => 'aox', 'Aqoxy2G02253' => 'aox', 'Aqoxy2G02411' => 'aox', 'Aqoxy5G00485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BZ66YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K8ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM4FUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6BF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HFV7XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25JBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0YNNV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MAKK6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P70IT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP2Z6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V61LZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YWP64R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3S9AI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7PGHH' => 'arhy', 'AT2G32150' => 'ath', 'AT3G62040' => 'ath', 'AT5G02230' => 'ath', 'AT5G59480' => 'ath', 'AT5G59490' => 'ath', 'ATR0332G060' => 'atr', 'ATR0559G190' => 'atr', 'ATR0693G294' => 'atr', 'Atru.chr3.3975' => 'acertr', 'Atru.chr3.3976' => 'acertr', 'Atru.chr3.3977' => 'acertr', 'Atru.chr4.2498' => 'acertr', 'Atru.chr5.838' => 'acertr', 'Atru.chr8.1990' => 'acertr', 'Atru.chr8.1991' => 'acertr', 'Atru.chr8.1992' => 'acertr', 'AUR62001759' => 'cqu', 'AUR62009545' => 'cqu', 'AUR62010474' => 'cqu', 'AUR62025820' => 'cqu', 'AUR62030422' => 'cqu', 'AUR62033605' => 'cqu', 'AUR62038615' => 'cqu', 'AUR62041347' => 'cqu', 'BcaB01g04574' => 'bca', 'BcaB02g09263' => 'bca', 'BcaB02g10453' => 'bca', 'BcaB05g22513' => 'bca', 'BcaB08g36253' => 'bca', 'BcaB08g36254' => 'bca', 'BcaC01g06519' => 'bca', 'BcaC02g11889' => 'bca', 'BcaC03g14010' => 'bca', 'BcaC03g18439' => 'bca', 'BcaC04g19765' => 'bca', 'BcaC09g48432' => 'bca', 'BcaNung07302' => 'bca', 'BolC2t06040H' => 'bol', 'BolC2t07346H' => 'bol', 'BolC3t13817H' => 'bol', 'BolC4t22625H' => 'bol', 'BolC4t23297H' => 'bol', 'BolC8t51278H' => 'bol', 'BolC9t58050H' => 'bol', 'BolC9t58051H' => 'bol', 'BolC9t60163H' => 'bol', 'BraA02t04712Z' => 'bra', 'BraA02t05791Z' => 'bra', 'BraA03t10483Z' => 'bra', 'BraA05t19795Z' => 'bra', 'BraA05t20276Z' => 'bra', 'BraA09t40827Z' => 'bra', 'BraA10t43750Z' => 'bra', 'BraA10t43751Z' => 'bra', 'BraA10t45370Z' => 'bra', 'C02p00400' => 'bna', 'C02p12460' => 'bna', 'C03p13680' => 'bna', 'C04p10270' => 'bna', 'C04p17500' => 'bna', 'C08p37010' => 'bna', 'C09p51880' => 'bna', 'C09p51890' => 'bna', 'C09p74300' => 'bna', 'CAN.G179.26' => 'can', 'CAN.G3384.1' => 'can', 'CAN.G394.68' => 'can', 'CAN.G907.13' => 'can', 'CANSAT11G0012' => 'cansat', 'CANSAT25G1586' => 'cansat', 'CANSAT35G0735' => 'cansat', 'CANSAT54G0556' => 'cansat', 'CANSAT64G0356' => 'cansat', 'CANSAT78G2042' => 'cansat', 'CARHR125920' => 'chi', 'CARHR131910' => 'chi', 'CARHR172390' => 'chi', 'CARHR211140' => 'chi', 'CARHR285850' => 'chi', 'CARHR285860' => 'chi', 'Carub.0004s1347' => 'cru', 'Carub.0004s1960' => 'cru', 'Carub.0005s2880' => 'cru', 'Carub.0006s0107' => 'cru', 'Carub.0008s2015' => 'cru', 'Carub.0008s2016' => 'cru', 'Carub.0008s2017' => 'cru', 'Ca_01315_v3' => 'car', 'Ca_05063_v3' => 'car', 'Ca_10231_v3' => 'car', 'Ca_10913_v3' => 'car', 'Ca_19156_v3' => 'car', 'Ca_23644_v3' => 'car', 'Ca_26735_v3' => 'car', 'Cc01_g13130' => 'ccan', 'Cc02_g21690' => 'ccan', 'Cc03_g03600' => 'ccan', 'Cc06_g02510' => 'ccan', 'CDE02G1265' => 'cde', 'CDE05G0415' => 'cde', 'CDE08G1082' => 'cde', 'Cfa005780' => 'cfa', 'Cfa011522' => 'cfa', 'Cfa011523' => 'cfa', 'Cfa015627' => 'cfa', 'Cfa017359' => 'cfa', 'Ciclev10005687m.g' => 'ccl', 'Ciclev10012173m.g' => 'ccl', 'Ciclev10021621m.g' => 'ccl', 'Ciclev10028968m.g' => 'ccl', 'Ciclev10029907m.g' => 'ccl', 'CiPaw.01G164800' => 'cil', 'CiPaw.07G083700' => 'cil', 'CiPaw.07G127000' => 'cil', 'CiPaw.07G136900' => 'cil', 'CiPaw.08G081700' => 'cil', 'CiPaw.09G194600' => 'cil', 'CiPaw.10G146500' => 'cil', 'CiPaw.13G091500' => 'cil', 'CiPaw.13G091600' => 'cil', 'ClCG00G003390' => 'cla', 'ClCG01G007220' => 'cla', 'ClCG03G001370' => 'cla', 'ClCG04G008100' => 'cla', 'ClCG06G006110' => 'cla', 'ClCG06G006130' => 'cla', 'ClCG10G021210' => 'cla', 'COL.COLO4_07648' => 'col', 'COL.COLO4_07650' => 'col', 'COL.COLO4_07651' => 'col', 'COL.COLO4_14780' => 'col', 'COL.COLO4_18546' => 'col', 'COL.COLO4_18547' => 'col', 'COL.COLO4_23103' => 'col', 'COL.COLO4_30419' => 'col', 'COL.COLO4_34232' => 'col', 'Cpa.g.sc169.20' => 'cpa', 'Cpa.g.sc57.45' => 'cpa', 'Cpa.g.sc58.124' => 'cpa', 'Cpa.g.sc58.125' => 'cpa', 'Cpa.g.sc81.118' => 'cpa', 'Cpa.g.sc81.119' => 'cpa', 'Cre12.g524700' => 'cre', 'CsaV3_1G034430' => 'csa', 'CsaV3_1G034440' => 'csa', 'CsaV3_1G034450' => 'csa', 'CsaV3_3G034830' => 'csa', 'CsaV3_4G025090' => 'csa', 'CsaV3_5G018660' => 'csa', 'CsaV3_6G038160' => 'csa', 'CSS0003447' => 'camsi', 'CSS0017840' => 'camsi', 'CSS0019260' => 'camsi', 'CSS0040375' => 'camsi', 'CSS0042533' => 'camsi', 'DCAR_005960' => 'dca', 'DCAR_012104' => 'dca', 'DCAR_012105' => 'dca', 'DCAR_012293' => 'dca', 'DCAR_015632' => 'dca', 'DCAR_024602' => 'dca', 'DCAR_028752' => 'dca', 'Dinv06261' => 'din', 'Dinv13982' => 'din', 'Dinv17029' => 'din', 'Dinv18463' => 'din', 'Dinv33181' => 'din', 'Dinv35585' => 'din', 'Dinv37161' => 'din', 'Dinv42977' => 'din', 'Dinv43122' => 'din', 'Dinv44517' => 'din', 'Duzib093G0256' => 'dzi', 'Duzib106G1254' => 'dzi', 'Duzib128G1789' => 'dzi', 'Duzib133G0633' => 'dzi', 'Duzib138G0510' => 'dzi', 'Duzib150G1084' => 'dzi', 'Duzib168G0488' => 'dzi', 'Duzib168G1523' => 'dzi', 'Duzib170G0133' => 'dzi', 'ECA234G1433' => 'eca', 'ECA236G1432' => 'eca', 'ECA236G2256' => 'eca', 'ECA236G2365' => 'eca', 'ECA236G4830' => 'eca', 'ECA248G1505' => 'eca', 'EL10Ac3g06431' => 'bvu', 'EL10Ac5g12577' => 'bvu', 'EL10Ac6g13533' => 'bvu', 'EL10Ac7g16045' => 'bvu', 'Eucgr.A01281' => 'egr', 'Eucgr.B02326' => 'egr', 'Eucgr.H03532' => 'egr', 'Eucgr.K00553' => 'egr', 'Eucgr.K03116' => 'egr', 'FAN02G3963' => 'fan', 'FAN05G0438' => 'fan', 'FAN09G2434' => 'fan', 'FAN12G3984' => 'fan', 'FAN14G0798' => 'fan', 'FAN17G0652' => 'fan', 'FAN19G1988' => 'fan', 'FAN22G0632' => 'fan', 'FAN23G0387' => 'fan', 'FAN26G1323' => 'fan', 'FAN28G0666' => 'fan', 'FvH4_1g26080' => 'fve', 'FvH4_3g36780' => 'fve', 'FvH4_4g15270' => 'fve', 'FvH4_6g13490' => 'fve', 'Glyma.01G098700' => 'gma', 'Glyma.03G065900' => 'gma', 'Glyma.03G073754' => 'gma', 'Glyma.03G073758' => 'gma', 'Glyma.03G083200' => 'gma', 'Glyma.03G225500' => 'gma', 'Glyma.05G037766' => 'gma', 'Glyma.07G133500' => 'gma', 'Glyma.10G139400' => 'gma', 'Glyma.10G248900' => 'gma', 'Glyma.11G137800' => 'gma', 'Glyma.12G061300' => 'gma', 'Glyma.13G337900' => 'gma', 'Glyma.15G036600' => 'gma', 'Glyma.18G182800' => 'gma', 'Glyma.19G222500' => 'gma', 'Glyma.20G144800' => 'gma', 'Gohir.A01G222000' => 'ghi', 'Gohir.A03G044000' => 'ghi', 'Gohir.A03G044100' => 'ghi', 'Gohir.A04G083100' => 'ghi', 'Gohir.A07G127200' => 'ghi', 'Gohir.A07G132400' => 'ghi', 'Gohir.A08G000700' => 'ghi', 'Gohir.A11G327300' => 'ghi', 'Gohir.D01G211500' => 'ghi', 'Gohir.D03G123400' => 'ghi', 'Gohir.D03G123500' => 'ghi', 'Gohir.D04G121800' => 'ghi', 'Gohir.D07G131500' => 'ghi', 'Gohir.D07G136600' => 'ghi', 'Gohir.D08G011600' => 'ghi', 'Gohir.D11G346200' => 'ghi', 'Gorai.001G142800' => 'gra', 'Gorai.001G148700' => 'gra', 'Gorai.002G257300' => 'gra', 'Gorai.003G130000' => 'gra', 'Gorai.003G130100' => 'gra', 'Gorai.004G005300' => 'gra', 'Gorai.007G376500' => 'gra', 'Gorai.012G104700' => 'gra', 'GSVIVG01017946001' => 'vvi', 'GSVIVG01024928001' => 'vvi', 'GSVIVG01028227001' => 'vvi', 'GSVIVG01034151001' => 'vvi', 'HanXRQChr05g0135031' => 'han', 'HanXRQChr05g0135041' => 'han', 'HanXRQChr05g0140021' => 'han', 'HanXRQChr06g0178981' => 'han', 'HanXRQChr07g0188251' => 'han', 'HanXRQChr08g0235311' => 'han', 'HanXRQChr09g0271011' => 'han', 'HanXRQChr10g0293321' => 'han', 'HanXRQChr13g0388171' => 'han', 'Haze_00916' => 'cav', 'Haze_05063' => 'cav', 'Haze_20814' => 'cav', 'Haze_24128' => 'cav', 'Hma1.2p1_0745F.1_g212010' => 'hma', 'Hma1.2p1_0757F.1_g213260' => 'hma', 'Hma1.2p1_0936F.1_g238840' => 'hma', 'Hma1.2p1_1735F.1_g299890' => 'hma', 'Hma1.2p1_1861F.1_g305685' => 'hma', 'HPP92_003397' => 'vpl', 'HPP92_012597' => 'vpl', 'HPP92_015520' => 'vpl', 'HPP92_015539' => 'vpl', 'HPP92_020373' => 'vpl', 'Hund04938' => 'sun', 'Hund10677' => 'sun', 'Hund11033' => 'sun', 'Hund12155' => 'sun', 'Lalb_Chr01g0022551' => 'lal', 'Lalb_Chr03g0042341' => 'lal', 'Lalb_Chr07g0192931' => 'lal', 'Lalb_Chr12g0209551' => 'lal', 'Lalb_Chr19g0125251' => 'lal', 'Lalb_Chr19g0137891' => 'lal', 'Lalb_Chr21g0304641' => 'lal', 'Lalb_Chr21g0309881' => 'lal', 'Lj1A5T12' => 'lonja', 'Lj1C148G10' => 'lonja', 'Lj2A93T83' => 'lonja', 'Lj3A738G68' => 'lonja', 'Lj3C966T1' => 'lonja', 'Lj3g0018958' => 'lja', 'Lj3g0021831' => 'lja', 'Lj3g0025443' => 'lja', 'Lj4g0026809' => 'lja', 'Lj5g0012558' => 'lja', 'Lj5g0021586' => 'lja', 'Lsat_1_v5_gn_5_156840' => 'lsa', 'Lsat_1_v5_gn_8_73460' => 'lsa', 'Lsat_1_v5_gn_8_73481' => 'lsa', 'Lsat_1_v5_gn_9_31601' => 'lsa', 'Lsat_1_v5_gn_9_77320' => 'lsa', 'Manes.01G171300' => 'mes', 'Manes.01G171400' => 'mes', 'Manes.01G236100' => 'mes', 'Manes.02G130500' => 'mes', 'Manes.02G130600' => 'mes', 'Manes.03G180200' => 'mes', 'Manes.05G007000' => 'mes', 'Manes.08G084400' => 'mes', 'Manes.09G092600' => 'mes', 'Manes.15G027900' => 'mes', 'MBI04_g40948_MAGBIO' => 'mbi', 'MBI14_g12123_MAGBIO' => 'mbi', 'MBI18_g28915_MAGBIO' => 'mbi', 'MCO09G053' => 'mco', 'MCO11G782' => 'mco', 'MCO15G215' => 'mco', 'MD03G1088500' => 'mdo', 'MD03G1088600' => 'mdo', 'MD04G1130800' => 'mdo', 'MD09G1291700' => 'mdo', 'MD11G1097500' => 'mdo', 'MD11G1097600' => 'mdo', 'MD12G1143900' => 'mdo', 'MD13G1191400' => 'mdo', 'MD16G1191500' => 'mdo', 'Medtr1g085570' => 'mtr', 'Medtr1g104610' => 'mtr', 'Medtr2g097520' => 'mtr', 'Medtr4g021800' => 'mtr', 'Medtr4g021825' => 'mtr', 'Medtr4g064270' => 'mtr', 'Medtr4g064380' => 'mtr', 'Medtr7g062150' => 'mtr', 'MELO3C003138.2' => 'cme', 'MELO3C005187.2' => 'cme', 'MELO3C009252.2' => 'cme', 'MELO3C014481.2' => 'cme', 'MELO3C020616.2' => 'cme', 'MELO3C020617.2' => 'cme', 'MELO3C020618.2' => 'cme', 'Migut.G00328' => 'egut', 'Migut.J00320' => 'egut', 'Migut.L01000' => 'egut', 'Migut.L01953' => 'egut', 'MSTRG.10253' => 'ama', 'MSTRG.19077' => 'ama', 'MSTRG.26780' => 'ama', 'MSTRG.4023' => 'ama', 'MSTRG.5655' => 'ama', 'MSTRG.9992' => 'ama', 'Nitab4.5_0000043g0310' => 'nta', 'Nitab4.5_0000463g0080' => 'nta', 'Nitab4.5_0000705g0170' => 'nta', 'Nitab4.5_0001326g0060' => 'nta', 'Nitab4.5_0001628g0030' => 'nta', 'Nitab4.5_0002103g0110' => 'nta', 'Nitab4.5_0002946g0030' => 'nta', 'Nitab4.5_0004639g0030' => 'nta', 'Nn2g11149' => 'nnu', 'Nn2g13389' => 'nnu', 'Nn4g25326' => 'nnu', 'Nn4g26290' => 'nnu', 'Nn5g29865' => 'nnu', 'Oeu004163.1' => 'oeu', 'Oeu006901.1' => 'oeu', 'Oeu010096.1' => 'oeu', 'Oeu024340.1' => 'oeu', 'Oeu048369.1' => 'oeu', 'Os01g0973000' => 'osa', 'Os03g0273800' => 'osa', 'Os03g0701200' => 'osa', 'Os03g0834050' => 'osa', 'Os07g0634400' => 'osa', 'Peaxi162Scf00092g01414' => 'pax', 'Peaxi162Scf00165g00818' => 'pax', 'Peaxi162Scf00309g00516' => 'pax', 'Peaxi162Scf00774g00218' => 'pax', 'PGR004G1824' => 'pgr', 'PGR004G2606' => 'pgr', 'PGR031G2716' => 'pgr', 'PGR102G2460' => 'pgr', 'PGR142G2599' => 'pgr', 'PGSC0003DMG400000843' => 'stu', 'PGSC0003DMG400008829' => 'stu', 'PGSC0003DMG400030418' => 'stu', 'PGSC0003DMG400031834' => 'stu', 'PGSC0003DMG401028300' => 'stu', 'PGSC0003DMG402028300' => 'stu', 'Phvul.001G219300' => 'pvu', 'Phvul.007G056000' => 'pvu', 'Phvul.007G208000' => 'pvu', 'Phvul.008G119500' => 'pvu', 'Phvul.010G011200' => 'pvu', 'Phvul.010G014800' => 'pvu', 'Phvul.011G062900' => 'pvu', 'Phvul.L007043' => 'pvu', 'Potri.001G242300' => 'ptr', 'Potri.002G185300' => 'ptr', 'Potri.006G086900' => 'ptr', 'Potri.008G151700' => 'ptr', 'Potri.009G033500' => 'ptr', 'Potri.010G089300' => 'ptr', 'Potri.014G110800' => 'ptr', 'Pp3c27_8130' => 'ppa', 'Pp3c6_27410' => 'ppa', 'PRCOL_00001659' => 'pco', 'PRCOL_00001927' => 'pco', 'PRCOL_00003649' => 'pco', 'Prupe.1G011600' => 'ppe', 'Prupe.3G000800' => 'ppe', 'Prupe.3G001100' => 'ppe', 'Prupe.6G072700' => 'ppe', 'Prupe.6G072800' => 'ppe', 'Prupe.6G257300' => 'ppe', 'Prupe.8G033000' => 'ppe', 'Psat0s2633g0080' => 'psa', 'Psat0s3396g0080' => 'psa', 'Psat0s3396g0200' => 'psa', 'Psat3g139080' => 'psa', 'Psat5g285080' => 'psa', 'Psat6g157760' => 'psa', 'Psat6g208440' => 'psa', 'Psat7g215320' => 'psa', 'Psat7g215400' => 'psa', 'Psat7g235600' => 'psa', 'Psat7g235760' => 'psa', 'PSO063G4603' => 'pso', 'PSO210G0182' => 'pso', 'PSO210G0196' => 'pso', 'PSO339G0394' => 'pso', 'PSO339G4127' => 'pso', 'PSO513G0064' => 'pso', 'PSO761G0079' => 'pso', 'QL01p031003' => 'qlo', 'QL01p031078' => 'qlo', 'QL06p003004' => 'qlo', 'QL07p048731' => 'qlo', 'QL09p037427' => 'qlo', 'RcHm_v2.0_Chr3g0466361' => 'rch', 'RcHm_v2.0_Chr3g0485571' => 'rch', 'RcHm_v2.0_Chr4g0416551' => 'rch', 'RcHm_v2.0_Chr5g0065831' => 'rch', 'Rhsim01G0230500' => 'rsi', 'Rhsim05G0194000' => 'rsi', 'Rhsim08G0250400' => 'rsi', 'Sabra02G0131000' => 'sbr', 'Sabra06G0066300' => 'sbr', 'Sabra08G0115500' => 'sbr', 'Sabra09G0023900' => 'sbr', 'Sabra10G0054000' => 'sbr', 'Sabra14G0081500' => 'sbr', 'Sabra16G0147100' => 'sbr', 'SalBow2G2957' => 'sbo', 'SalBow4G3320' => 'sbo', 'SalBow8G1894' => 'sbo', 'Sc07g0007950' => 'sci', 'Sc12g0001360' => 'sci', 'Sc13g0004330' => 'sci', 'Sc20g0005010' => 'sci', 'Sed0000361' => 'sed', 'Sed0001706' => 'sed', 'Sed0002422' => 'sed', 'Sed0004029' => 'sed', 'Sed0004602' => 'sed', 'Sed0004943' => 'sed', 'Sed0008646' => 'sed', 'Sed0023313' => 'sed', 'Sed0024843' => 'sed', 'SEGI_00081' => 'sgi', 'SEGI_00947' => 'sgi', 'SEGI_04046' => 'sgi', 'SEGI_06880' => 'sgi', 'SEGI_09736' => 'sgi', 'SEGI_12741' => 'sgi', 'SEGI_14530' => 'sgi', 'SEGI_20705' => 'sgi', 'SEGI_26088' => 'sgi', 'SEGI_28323' => 'sgi', 'SEGI_33343' => 'sgi', 'SGA_v2.0_scaffold126G33775' => 'sas', 'SGA_v2.0_scaffold2G01337' => 'sas', 'SGA_v2.0_scaffold38G15006' => 'sas', 'SGA_v2.0_scaffold39G15264' => 'sas', 'SGA_v2.0_scaffold453G51880' => 'sas', 'SHI12696' => 'shi', 'SMO367G1096' => 'smo', 'Solyc01g068630.3' => 'sly', 'Solyc05g011880.3' => 'sly', 'Solyc06g076300.3' => 'sly', 'Solyc09g010940.4' => 'sly', 'Solyc09g075890.3' => 'sly', 'Sopen01g030560' => 'spe', 'Sopen05g006630' => 'spe', 'Sopen06g032720' => 'spe', 'Sopen09g005660' => 'spe', 'Sopen09g030690' => 'spe', 'Sp4g14540' => 'spa', 'Sp4g20030' => 'spa', 'Sp5g01320' => 'spa', 'Sp6g21170' => 'spa', 'Sp6g21180' => 'spa', 'Sp6g21190' => 'spa', 'Sp6g40220' => 'spa', 'TAR362G0122' => 'tar', 'TAR362G1338' => 'tar', 'TAR369G0590' => 'tar', 'TAR371G0824' => 'tar', 'TAR622G1429' => 'tar', 'TAR623G0734' => 'tar', 'TAR625G0441' => 'tar', 'TAR629G0976' => 'tar', 'TAR633G1195' => 'tar', 'TAR636G2660' => 'tar', 'THA.LOC104799440' => 'tha', 'THA.LOC104800966' => 'tha', 'THA.LOC104806559' => 'tha', 'THA.LOC104810765' => 'tha', 'THA.LOC104816266' => 'tha', 'THA.LOC104817419' => 'tha', 'THA.LOC104827021' => 'tha', 'Thecc.01G327400' => 'tca', 'Thecc.04G229200' => 'tca', 'Thecc.05G037400' => 'tca', 'Thecc.09G318600' => 'tca', 'Thecc.09G318700' => 'tca', 'Thhalv10006238m.g' => 'esa', 'Thhalv10014321m.g' => 'esa', 'Thhalv10014335m.g' => 'esa', 'Thhalv10015826m.g' => 'esa', 'Thhalv10017107m.g' => 'esa', 'Thhalv10017180m.g' => 'esa', 'Thhalv10029339m.g' => 'esa', 'TPR.G1699' => 'tpr', 'TPR.G23609' => 'tpr', 'TPR.G3081' => 'tpr', 'TPR.G40397' => 'tpr', 'TPR.G5522' => 'tpr', 'TPR.G5618' => 'tpr', 'TPR.G5626' => 'tpr', 'TWI09G1632' => 'twi', 'TWI23G1230' => 'twi', 'TWI53G1064' => 'twi', 'TWI59G0751' => 'twi', 'TWI74G0947' => 'twi', 'TWI77G0337' => 'twi', 'TWI79G1254' => 'twi', 'unitig_0.g2341' => 'ugi', 'unitig_26.g10006' => 'ugi', 'unitig_26.g10008' => 'ugi', 'unitig_26.g9192' => 'ugi', 'vmacro14547' => 'vma', 'vmacro15333' => 'vma', 'vmacro18743' => 'vma', 'vmacro20166' => 'vma', 'VMungo0331G0523' => 'vmu', 'VMungo0331G1202' => 'vmu', 'VMungo0720G1228' => 'vmu', 'VMungo0720G1514' => 'vmu', 'VMungo1080G0169' => 'vmu', 'VMungo1127G1475' => 'vmu', 'VMungo1383G1208' => 'vmu', 'VMungo1383G1698' => 'vmu', 'Zm00001eb012270' => 'zma', 'Zm00001eb054100' => 'zma', 'Zm00001eb063350' => 'zma', 'Zm00001eb328560' => 'zma', 'Zm00001eb342820' => 'zma', 'Zm00001eb362210' => 'zma', 'Zm00001eb397730' => 'zma', 'Zm00001eb399750' => 'zma' ), 'gf_id' => 'HOM05D000959', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000959' ), 'data_identifier' => 'HOM05D000959', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000959', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '622', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p07100' => 'bna', 'A03p11720' => 'bna', 'A05p08300' => 'bna', 'A05p13380' => 'bna', 'A09p54130' => 'bna', 'A10p16690' => 'bna', 'A10p16700' => 'bna', 'A10p33390' => 'bna', 'Aa31LG10G16020' => 'aar', 'Aa31LG1G11810' => 'aar', 'Aa31LG1G11830' => 'aar', 'Aa31LG1G22510' => 'aar', 'Aa31LG5G4890' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5793' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2310' => 'aag', 'Actinidia08499' => 'ach', 'Actinidia11262' => 'ach', 'Actinidia23926' => 'ach', 'Actinidia34420' => 'ach', 'Actinidia36970' => 'ach', 'Ah.02g111220' => 'amhyb', 'Ah.15g097750' => 'amhyb', 'AL4G27500' => 'aly', 'AL6G11470' => 'aly', 'AL8G35950' => 'aly', 'AL8G35960' => 'aly', 'AL8G35970' => 'aly', 'Aqoxy1G00912' => 'aox', 'Aqoxy2G02253' => 'aox', 'Aqoxy2G02411' => 'aox', 'Aqoxy5G00485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BZ66YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K8ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM4FUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6BF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HFV7XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25JBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0YNNV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MAKK6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P70IT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP2Z6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V61LZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YWP64R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3S9AI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7PGHH' => 'arhy', 'AT2G32150' => 'ath', 'AT3G62040' => 'ath', 'AT5G02230' => 'ath', 'AT5G59480' => 'ath', 'AT5G59490' => 'ath', 'ATR0332G060' => 'atr', 'ATR0559G190' => 'atr', 'ATR0693G294' => 'atr', 'Atru.chr3.3975' => 'acertr', 'Atru.chr3.3976' => 'acertr', 'Atru.chr3.3977' => 'acertr', 'Atru.chr4.2498' => 'acertr', 'Atru.chr5.838' => 'acertr', 'Atru.chr8.1990' => 'acertr', 'Atru.chr8.1991' => 'acertr', 'Atru.chr8.1992' => 'acertr', 'AUR62001759' => 'cqu', 'AUR62009545' => 'cqu', 'AUR62010474' => 'cqu', 'AUR62025820' => 'cqu', 'AUR62030422' => 'cqu', 'AUR62033605' => 'cqu', 'AUR62038615' => 'cqu', 'AUR62041347' => 'cqu', 'BcaB01g04574' => 'bca', 'BcaB02g09263' => 'bca', 'BcaB02g10453' => 'bca', 'BcaB05g22513' => 'bca', 'BcaB08g36253' => 'bca', 'BcaB08g36254' => 'bca', 'BcaC01g06519' => 'bca', 'BcaC02g11889' => 'bca', 'BcaC03g14010' => 'bca', 'BcaC03g18439' => 'bca', 'BcaC04g19765' => 'bca', 'BcaC09g48432' => 'bca', 'BcaNung07302' => 'bca', 'BolC2t06040H' => 'bol', 'BolC2t07346H' => 'bol', 'BolC3t13817H' => 'bol', 'BolC4t22625H' => 'bol', 'BolC4t23297H' => 'bol', 'BolC8t51278H' => 'bol', 'BolC9t58050H' => 'bol', 'BolC9t58051H' => 'bol', 'BolC9t60163H' => 'bol', 'BraA02t04712Z' => 'bra', 'BraA02t05791Z' => 'bra', 'BraA03t10483Z' => 'bra', 'BraA05t19795Z' => 'bra', 'BraA05t20276Z' => 'bra', 'BraA09t40827Z' => 'bra', 'BraA10t43750Z' => 'bra', 'BraA10t43751Z' => 'bra', 'BraA10t45370Z' => 'bra', 'C02p00400' => 'bna', 'C02p12460' => 'bna', 'C03p13680' => 'bna', 'C04p10270' => 'bna', 'C04p17500' => 'bna', 'C08p37010' => 'bna', 'C09p51880' => 'bna', 'C09p51890' => 'bna', 'C09p74300' => 'bna', 'CAN.G179.26' => 'can', 'CAN.G3384.1' => 'can', 'CAN.G394.68' => 'can', 'CAN.G907.13' => 'can', 'CANSAT11G0012' => 'cansat', 'CANSAT25G1586' => 'cansat', 'CANSAT35G0735' => 'cansat', 'CANSAT54G0556' => 'cansat', 'CANSAT64G0356' => 'cansat', 'CANSAT78G2042' => 'cansat', 'CARHR125920' => 'chi', 'CARHR131910' => 'chi', 'CARHR172390' => 'chi', 'CARHR211140' => 'chi', 'CARHR285850' => 'chi', 'CARHR285860' => 'chi', 'Carub.0004s1347' => 'cru', 'Carub.0004s1960' => 'cru', 'Carub.0005s2880' => 'cru', 'Carub.0006s0107' => 'cru', 'Carub.0008s2015' => 'cru', 'Carub.0008s2016' => 'cru', 'Carub.0008s2017' => 'cru', 'Ca_01315_v3' => 'car', 'Ca_05063_v3' => 'car', 'Ca_10231_v3' => 'car', 'Ca_10913_v3' => 'car', 'Ca_19156_v3' => 'car', 'Ca_23644_v3' => 'car', 'Ca_26735_v3' => 'car', 'Cc01_g13130' => 'ccan', 'Cc02_g21690' => 'ccan', 'Cc03_g03600' => 'ccan', 'Cc06_g02510' => 'ccan', 'CDE02G1265' => 'cde', 'CDE05G0415' => 'cde', 'CDE08G1082' => 'cde', 'Cfa005780' => 'cfa', 'Cfa011522' => 'cfa', 'Cfa011523' => 'cfa', 'Cfa015627' => 'cfa', 'Cfa017359' => 'cfa', 'Ciclev10005687m.g' => 'ccl', 'Ciclev10012173m.g' => 'ccl', 'Ciclev10021621m.g' => 'ccl', 'Ciclev10028968m.g' => 'ccl', 'Ciclev10029907m.g' => 'ccl', 'CiPaw.01G164800' => 'cil', 'CiPaw.07G083700' => 'cil', 'CiPaw.07G127000' => 'cil', 'CiPaw.07G136900' => 'cil', 'CiPaw.08G081700' => 'cil', 'CiPaw.09G194600' => 'cil', 'CiPaw.10G146500' => 'cil', 'CiPaw.13G091500' => 'cil', 'CiPaw.13G091600' => 'cil', 'ClCG00G003390' => 'cla', 'ClCG01G007220' => 'cla', 'ClCG03G001370' => 'cla', 'ClCG04G008100' => 'cla', 'ClCG06G006110' => 'cla', 'ClCG06G006130' => 'cla', 'ClCG10G021210' => 'cla', 'COL.COLO4_07648' => 'col', 'COL.COLO4_07650' => 'col', 'COL.COLO4_07651' => 'col', 'COL.COLO4_14780' => 'col', 'COL.COLO4_18546' => 'col', 'COL.COLO4_18547' => 'col', 'COL.COLO4_23103' => 'col', 'COL.COLO4_30419' => 'col', 'COL.COLO4_34232' => 'col', 'Cpa.g.sc169.20' => 'cpa', 'Cpa.g.sc57.45' => 'cpa', 'Cpa.g.sc58.124' => 'cpa', 'Cpa.g.sc58.125' => 'cpa', 'Cpa.g.sc81.118' => 'cpa', 'Cpa.g.sc81.119' => 'cpa', 'Cre12.g524700' => 'cre', 'CsaV3_1G034430' => 'csa', 'CsaV3_1G034440' => 'csa', 'CsaV3_1G034450' => 'csa', 'CsaV3_3G034830' => 'csa', 'CsaV3_4G025090' => 'csa', 'CsaV3_5G018660' => 'csa', 'CsaV3_6G038160' => 'csa', 'CSS0003447' => 'camsi', 'CSS0017840' => 'camsi', 'CSS0019260' => 'camsi', 'CSS0040375' => 'camsi', 'CSS0042533' => 'camsi', 'DCAR_005960' => 'dca', 'DCAR_012104' => 'dca', 'DCAR_012105' => 'dca', 'DCAR_012293' => 'dca', 'DCAR_015632' => 'dca', 'DCAR_024602' => 'dca', 'DCAR_028752' => 'dca', 'Dinv06261' => 'din', 'Dinv13982' => 'din', 'Dinv17029' => 'din', 'Dinv18463' => 'din', 'Dinv33181' => 'din', 'Dinv35585' => 'din', 'Dinv37161' => 'din', 'Dinv42977' => 'din', 'Dinv43122' => 'din', 'Dinv44517' => 'din', 'Duzib093G0256' => 'dzi', 'Duzib106G1254' => 'dzi', 'Duzib128G1789' => 'dzi', 'Duzib133G0633' => 'dzi', 'Duzib138G0510' => 'dzi', 'Duzib150G1084' => 'dzi', 'Duzib168G0488' => 'dzi', 'Duzib168G1523' => 'dzi', 'Duzib170G0133' => 'dzi', 'ECA234G1433' => 'eca', 'ECA236G1432' => 'eca', 'ECA236G2256' => 'eca', 'ECA236G2365' => 'eca', 'ECA236G4830' => 'eca', 'ECA248G1505' => 'eca', 'EL10Ac3g06431' => 'bvu', 'EL10Ac5g12577' => 'bvu', 'EL10Ac6g13533' => 'bvu', 'EL10Ac7g16045' => 'bvu', 'Eucgr.A01281' => 'egr', 'Eucgr.B02326' => 'egr', 'Eucgr.H03532' => 'egr', 'Eucgr.K00553' => 'egr', 'Eucgr.K03116' => 'egr', 'FAN02G3963' => 'fan', 'FAN05G0438' => 'fan', 'FAN09G2434' => 'fan', 'FAN12G3984' => 'fan', 'FAN14G0798' => 'fan', 'FAN17G0652' => 'fan', 'FAN19G1988' => 'fan', 'FAN22G0632' => 'fan', 'FAN23G0387' => 'fan', 'FAN26G1323' => 'fan', 'FAN28G0666' => 'fan', 'FvH4_1g26080' => 'fve', 'FvH4_3g36780' => 'fve', 'FvH4_4g15270' => 'fve', 'FvH4_6g13490' => 'fve', 'Glyma.01G098700' => 'gma', 'Glyma.03G065900' => 'gma', 'Glyma.03G073754' => 'gma', 'Glyma.03G073758' => 'gma', 'Glyma.03G083200' => 'gma', 'Glyma.03G225500' => 'gma', 'Glyma.05G037766' => 'gma', 'Glyma.07G133500' => 'gma', 'Glyma.10G139400' => 'gma', 'Glyma.10G248900' => 'gma', 'Glyma.11G137800' => 'gma', 'Glyma.12G061300' => 'gma', 'Glyma.13G337900' => 'gma', 'Glyma.15G036600' => 'gma', 'Glyma.18G182800' => 'gma', 'Glyma.19G222500' => 'gma', 'Glyma.20G144800' => 'gma', 'Gohir.A01G222000' => 'ghi', 'Gohir.A03G044000' => 'ghi', 'Gohir.A03G044100' => 'ghi', 'Gohir.A04G083100' => 'ghi', 'Gohir.A07G127200' => 'ghi', 'Gohir.A07G132400' => 'ghi', 'Gohir.A08G000700' => 'ghi', 'Gohir.A11G327300' => 'ghi', 'Gohir.D01G211500' => 'ghi', 'Gohir.D03G123400' => 'ghi', 'Gohir.D03G123500' => 'ghi', 'Gohir.D04G121800' => 'ghi', 'Gohir.D07G131500' => 'ghi', 'Gohir.D07G136600' => 'ghi', 'Gohir.D08G011600' => 'ghi', 'Gohir.D11G346200' => 'ghi', 'Gorai.001G142800' => 'gra', 'Gorai.001G148700' => 'gra', 'Gorai.002G257300' => 'gra', 'Gorai.003G130000' => 'gra', 'Gorai.003G130100' => 'gra', 'Gorai.004G005300' => 'gra', 'Gorai.007G376500' => 'gra', 'Gorai.012G104700' => 'gra', 'GSVIVG01017946001' => 'vvi', 'GSVIVG01024928001' => 'vvi', 'GSVIVG01028227001' => 'vvi', 'GSVIVG01034151001' => 'vvi', 'HanXRQChr05g0135031' => 'han', 'HanXRQChr05g0135041' => 'han', 'HanXRQChr05g0140021' => 'han', 'HanXRQChr06g0178981' => 'han', 'HanXRQChr07g0188251' => 'han', 'HanXRQChr08g0235311' => 'han', 'HanXRQChr09g0271011' => 'han', 'HanXRQChr10g0293321' => 'han', 'HanXRQChr13g0388171' => 'han', 'Haze_00916' => 'cav', 'Haze_05063' => 'cav', 'Haze_20814' => 'cav', 'Haze_24128' => 'cav', 'Hma1.2p1_0745F.1_g212010' => 'hma', 'Hma1.2p1_0757F.1_g213260' => 'hma', 'Hma1.2p1_0936F.1_g238840' => 'hma', 'Hma1.2p1_1735F.1_g299890' => 'hma', 'Hma1.2p1_1861F.1_g305685' => 'hma', 'HPP92_003397' => 'vpl', 'HPP92_012597' => 'vpl', 'HPP92_015520' => 'vpl', 'HPP92_015539' => 'vpl', 'HPP92_020373' => 'vpl', 'Hund04938' => 'sun', 'Hund10677' => 'sun', 'Hund11033' => 'sun', 'Hund12155' => 'sun', 'Lalb_Chr01g0022551' => 'lal', 'Lalb_Chr03g0042341' => 'lal', 'Lalb_Chr07g0192931' => 'lal', 'Lalb_Chr12g0209551' => 'lal', 'Lalb_Chr19g0125251' => 'lal', 'Lalb_Chr19g0137891' => 'lal', 'Lalb_Chr21g0304641' => 'lal', 'Lalb_Chr21g0309881' => 'lal', 'Lj1A5T12' => 'lonja', 'Lj1C148G10' => 'lonja', 'Lj2A93T83' => 'lonja', 'Lj3A738G68' => 'lonja', 'Lj3C966T1' => 'lonja', 'Lj3g0018958' => 'lja', 'Lj3g0021831' => 'lja', 'Lj3g0025443' => 'lja', 'Lj4g0026809' => 'lja', 'Lj5g0012558' => 'lja', 'Lj5g0021586' => 'lja', 'Lsat_1_v5_gn_5_156840' => 'lsa', 'Lsat_1_v5_gn_8_73460' => 'lsa', 'Lsat_1_v5_gn_8_73481' => 'lsa', 'Lsat_1_v5_gn_9_31601' => 'lsa', 'Lsat_1_v5_gn_9_77320' => 'lsa', 'Manes.01G171300' => 'mes', 'Manes.01G171400' => 'mes', 'Manes.01G236100' => 'mes', 'Manes.02G130500' => 'mes', 'Manes.02G130600' => 'mes', 'Manes.03G180200' => 'mes', 'Manes.05G007000' => 'mes', 'Manes.08G084400' => 'mes', 'Manes.09G092600' => 'mes', 'Manes.15G027900' => 'mes', 'MBI04_g40948_MAGBIO' => 'mbi', 'MBI14_g12123_MAGBIO' => 'mbi', 'MBI18_g28915_MAGBIO' => 'mbi', 'MCO09G053' => 'mco', 'MCO11G782' => 'mco', 'MCO15G215' => 'mco', 'MD03G1088500' => 'mdo', 'MD03G1088600' => 'mdo', 'MD04G1130800' => 'mdo', 'MD09G1291700' => 'mdo', 'MD11G1097500' => 'mdo', 'MD11G1097600' => 'mdo', 'MD12G1143900' => 'mdo', 'MD13G1191400' => 'mdo', 'MD16G1191500' => 'mdo', 'Medtr1g085570' => 'mtr', 'Medtr1g104610' => 'mtr', 'Medtr2g097520' => 'mtr', 'Medtr4g021800' => 'mtr', 'Medtr4g021825' => 'mtr', 'Medtr4g064270' => 'mtr', 'Medtr4g064380' => 'mtr', 'Medtr7g062150' => 'mtr', 'MELO3C003138.2' => 'cme', 'MELO3C005187.2' => 'cme', 'MELO3C009252.2' => 'cme', 'MELO3C014481.2' => 'cme', 'MELO3C020616.2' => 'cme', 'MELO3C020617.2' => 'cme', 'MELO3C020618.2' => 'cme', 'Migut.G00328' => 'egut', 'Migut.J00320' => 'egut', 'Migut.L01000' => 'egut', 'Migut.L01953' => 'egut', 'MSTRG.10253' => 'ama', 'MSTRG.19077' => 'ama', 'MSTRG.26780' => 'ama', 'MSTRG.4023' => 'ama', 'MSTRG.5655' => 'ama', 'MSTRG.9992' => 'ama', 'Nitab4.5_0000043g0310' => 'nta', 'Nitab4.5_0000463g0080' => 'nta', 'Nitab4.5_0000705g0170' => 'nta', 'Nitab4.5_0001326g0060' => 'nta', 'Nitab4.5_0001628g0030' => 'nta', 'Nitab4.5_0002103g0110' => 'nta', 'Nitab4.5_0002946g0030' => 'nta', 'Nitab4.5_0004639g0030' => 'nta', 'Nn2g11149' => 'nnu', 'Nn2g13389' => 'nnu', 'Nn4g25326' => 'nnu', 'Nn4g26290' => 'nnu', 'Nn5g29865' => 'nnu', 'Oeu004163.1' => 'oeu', 'Oeu006901.1' => 'oeu', 'Oeu010096.1' => 'oeu', 'Oeu024340.1' => 'oeu', 'Oeu048369.1' => 'oeu', 'Os01g0973000' => 'osa', 'Os03g0273800' => 'osa', 'Os03g0701200' => 'osa', 'Os03g0834050' => 'osa', 'Os07g0634400' => 'osa', 'Peaxi162Scf00092g01414' => 'pax', 'Peaxi162Scf00165g00818' => 'pax', 'Peaxi162Scf00309g00516' => 'pax', 'Peaxi162Scf00774g00218' => 'pax', 'PGR004G1824' => 'pgr', 'PGR004G2606' => 'pgr', 'PGR031G2716' => 'pgr', 'PGR102G2460' => 'pgr', 'PGR142G2599' => 'pgr', 'PGSC0003DMG400000843' => 'stu', 'PGSC0003DMG400008829' => 'stu', 'PGSC0003DMG400030418' => 'stu', 'PGSC0003DMG400031834' => 'stu', 'PGSC0003DMG401028300' => 'stu', 'PGSC0003DMG402028300' => 'stu', 'Phvul.001G219300' => 'pvu', 'Phvul.007G056000' => 'pvu', 'Phvul.007G208000' => 'pvu', 'Phvul.008G119500' => 'pvu', 'Phvul.010G011200' => 'pvu', 'Phvul.010G014800' => 'pvu', 'Phvul.011G062900' => 'pvu', 'Phvul.L007043' => 'pvu', 'Potri.001G242300' => 'ptr', 'Potri.002G185300' => 'ptr', 'Potri.006G086900' => 'ptr', 'Potri.008G151700' => 'ptr', 'Potri.009G033500' => 'ptr', 'Potri.010G089300' => 'ptr', 'Potri.014G110800' => 'ptr', 'Pp3c27_8130' => 'ppa', 'Pp3c6_27410' => 'ppa', 'PRCOL_00001659' => 'pco', 'PRCOL_00001927' => 'pco', 'PRCOL_00003649' => 'pco', 'Prupe.1G011600' => 'ppe', 'Prupe.3G000800' => 'ppe', 'Prupe.3G001100' => 'ppe', 'Prupe.6G072700' => 'ppe', 'Prupe.6G072800' => 'ppe', 'Prupe.6G257300' => 'ppe', 'Prupe.8G033000' => 'ppe', 'Psat0s2633g0080' => 'psa', 'Psat0s3396g0080' => 'psa', 'Psat0s3396g0200' => 'psa', 'Psat3g139080' => 'psa', 'Psat5g285080' => 'psa', 'Psat6g157760' => 'psa', 'Psat6g208440' => 'psa', 'Psat7g215320' => 'psa', 'Psat7g215400' => 'psa', 'Psat7g235600' => 'psa', 'Psat7g235760' => 'psa', 'PSO063G4603' => 'pso', 'PSO210G0182' => 'pso', 'PSO210G0196' => 'pso', 'PSO339G0394' => 'pso', 'PSO339G4127' => 'pso', 'PSO513G0064' => 'pso', 'PSO761G0079' => 'pso', 'QL01p031003' => 'qlo', 'QL01p031078' => 'qlo', 'QL06p003004' => 'qlo', 'QL07p048731' => 'qlo', 'QL09p037427' => 'qlo', 'RcHm_v2.0_Chr3g0466361' => 'rch', 'RcHm_v2.0_Chr3g0485571' => 'rch', 'RcHm_v2.0_Chr4g0416551' => 'rch', 'RcHm_v2.0_Chr5g0065831' => 'rch', 'Rhsim01G0230500' => 'rsi', 'Rhsim05G0194000' => 'rsi', 'Rhsim08G0250400' => 'rsi', 'Sabra02G0131000' => 'sbr', 'Sabra06G0066300' => 'sbr', 'Sabra08G0115500' => 'sbr', 'Sabra09G0023900' => 'sbr', 'Sabra10G0054000' => 'sbr', 'Sabra14G0081500' => 'sbr', 'Sabra16G0147100' => 'sbr', 'SalBow2G2957' => 'sbo', 'SalBow4G3320' => 'sbo', 'SalBow8G1894' => 'sbo', 'Sc07g0007950' => 'sci', 'Sc12g0001360' => 'sci', 'Sc13g0004330' => 'sci', 'Sc20g0005010' => 'sci', 'Sed0000361' => 'sed', 'Sed0001706' => 'sed', 'Sed0002422' => 'sed', 'Sed0004029' => 'sed', 'Sed0004602' => 'sed', 'Sed0004943' => 'sed', 'Sed0008646' => 'sed', 'Sed0023313' => 'sed', 'Sed0024843' => 'sed', 'SEGI_00081' => 'sgi', 'SEGI_00947' => 'sgi', 'SEGI_04046' => 'sgi', 'SEGI_06880' => 'sgi', 'SEGI_09736' => 'sgi', 'SEGI_12741' => 'sgi', 'SEGI_14530' => 'sgi', 'SEGI_20705' => 'sgi', 'SEGI_26088' => 'sgi', 'SEGI_28323' => 'sgi', 'SEGI_33343' => 'sgi', 'SGA_v2.0_scaffold126G33775' => 'sas', 'SGA_v2.0_scaffold2G01337' => 'sas', 'SGA_v2.0_scaffold38G15006' => 'sas', 'SGA_v2.0_scaffold39G15264' => 'sas', 'SGA_v2.0_scaffold453G51880' => 'sas', 'SHI12696' => 'shi', 'SMO367G1096' => 'smo', 'Solyc01g068630.3' => 'sly', 'Solyc05g011880.3' => 'sly', 'Solyc06g076300.3' => 'sly', 'Solyc09g010940.4' => 'sly', 'Solyc09g075890.3' => 'sly', 'Sopen01g030560' => 'spe', 'Sopen05g006630' => 'spe', 'Sopen06g032720' => 'spe', 'Sopen09g005660' => 'spe', 'Sopen09g030690' => 'spe', 'Sp4g14540' => 'spa', 'Sp4g20030' => 'spa', 'Sp5g01320' => 'spa', 'Sp6g21170' => 'spa', 'Sp6g21180' => 'spa', 'Sp6g21190' => 'spa', 'Sp6g40220' => 'spa', 'TAR362G0122' => 'tar', 'TAR362G1338' => 'tar', 'TAR369G0590' => 'tar', 'TAR371G0824' => 'tar', 'TAR622G1429' => 'tar', 'TAR623G0734' => 'tar', 'TAR625G0441' => 'tar', 'TAR629G0976' => 'tar', 'TAR633G1195' => 'tar', 'TAR636G2660' => 'tar', 'THA.LOC104799440' => 'tha', 'THA.LOC104800966' => 'tha', 'THA.LOC104806559' => 'tha', 'THA.LOC104810765' => 'tha', 'THA.LOC104816266' => 'tha', 'THA.LOC104817419' => 'tha', 'THA.LOC104827021' => 'tha', 'Thecc.01G327400' => 'tca', 'Thecc.04G229200' => 'tca', 'Thecc.05G037400' => 'tca', 'Thecc.09G318600' => 'tca', 'Thecc.09G318700' => 'tca', 'Thhalv10006238m.g' => 'esa', 'Thhalv10014321m.g' => 'esa', 'Thhalv10014335m.g' => 'esa', 'Thhalv10015826m.g' => 'esa', 'Thhalv10017107m.g' => 'esa', 'Thhalv10017180m.g' => 'esa', 'Thhalv10029339m.g' => 'esa', 'TPR.G1699' => 'tpr', 'TPR.G23609' => 'tpr', 'TPR.G3081' => 'tpr', 'TPR.G40397' => 'tpr', 'TPR.G5522' => 'tpr', 'TPR.G5618' => 'tpr', 'TPR.G5626' => 'tpr', 'TWI09G1632' => 'twi', 'TWI23G1230' => 'twi', 'TWI53G1064' => 'twi', 'TWI59G0751' => 'twi', 'TWI74G0947' => 'twi', 'TWI77G0337' => 'twi', 'TWI79G1254' => 'twi', 'unitig_0.g2341' => 'ugi', 'unitig_26.g10006' => 'ugi', 'unitig_26.g10008' => 'ugi', 'unitig_26.g9192' => 'ugi', 'vmacro14547' => 'vma', 'vmacro15333' => 'vma', 'vmacro18743' => 'vma', 'vmacro20166' => 'vma', 'VMungo0331G0523' => 'vmu', 'VMungo0331G1202' => 'vmu', 'VMungo0720G1228' => 'vmu', 'VMungo0720G1514' => 'vmu', 'VMungo1080G0169' => 'vmu', 'VMungo1127G1475' => 'vmu', 'VMungo1383G1208' => 'vmu', 'VMungo1383G1698' => 'vmu', 'Zm00001eb012270' => 'zma', 'Zm00001eb054100' => 'zma', 'Zm00001eb063350' => 'zma', 'Zm00001eb328560' => 'zma', 'Zm00001eb342820' => 'zma', 'Zm00001eb362210' => 'zma', 'Zm00001eb397730' => 'zma', 'Zm00001eb399750' => 'zma' ) $gf_id = 'HOM05D000959' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000959' ) $data_identifier = 'HOM05D000959' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 5, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 5, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 10, 'mbi' => (int) 3, 'mco' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 2, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 3, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 11, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399750' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000959', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '622', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p07100' => 'bna', 'A03p11720' => 'bna', 'A05p08300' => 'bna', 'A05p13380' => 'bna', 'A09p54130' => 'bna', 'A10p16690' => 'bna', 'A10p16700' => 'bna', 'A10p33390' => 'bna', 'Aa31LG10G16020' => 'aar', 'Aa31LG1G11810' => 'aar', 'Aa31LG1G11830' => 'aar', 'Aa31LG1G22510' => 'aar', 'Aa31LG5G4890' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5793' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2310' => 'aag', 'Actinidia08499' => 'ach', 'Actinidia11262' => 'ach', 'Actinidia23926' => 'ach', 'Actinidia34420' => 'ach', 'Actinidia36970' => 'ach', 'Ah.02g111220' => 'amhyb', 'Ah.15g097750' => 'amhyb', 'AL4G27500' => 'aly', 'AL6G11470' => 'aly', 'AL8G35950' => 'aly', 'AL8G35960' => 'aly', 'AL8G35970' => 'aly', 'Aqoxy1G00912' => 'aox', 'Aqoxy2G02253' => 'aox', 'Aqoxy2G02411' => 'aox', 'Aqoxy5G00485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BZ66YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K8ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM4FUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6BF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HFV7XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25JBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0YNNV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MAKK6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P70IT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP2Z6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V61LZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YWP64R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3S9AI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7PGHH' => 'arhy', 'AT2G32150' => 'ath', 'AT3G62040' => 'ath', 'AT5G02230' => 'ath', 'AT5G59480' => 'ath', 'AT5G59490' => 'ath', 'ATR0332G060' => 'atr', 'ATR0559G190' => 'atr', 'ATR0693G294' => 'atr', 'Atru.chr3.3975' => 'acertr', 'Atru.chr3.3976' => 'acertr', 'Atru.chr3.3977' => 'acertr', 'Atru.chr4.2498' => 'acertr', 'Atru.chr5.838' => 'acertr', 'Atru.chr8.1990' => 'acertr', 'Atru.chr8.1991' => 'acertr', 'Atru.chr8.1992' => 'acertr', 'AUR62001759' => 'cqu', 'AUR62009545' => 'cqu', 'AUR62010474' => 'cqu', 'AUR62025820' => 'cqu', 'AUR62030422' => 'cqu', 'AUR62033605' => 'cqu', 'AUR62038615' => 'cqu', 'AUR62041347' => 'cqu', 'BcaB01g04574' => 'bca', 'BcaB02g09263' => 'bca', 'BcaB02g10453' => 'bca', 'BcaB05g22513' => 'bca', 'BcaB08g36253' => 'bca', 'BcaB08g36254' => 'bca', 'BcaC01g06519' => 'bca', 'BcaC02g11889' => 'bca', 'BcaC03g14010' => 'bca', 'BcaC03g18439' => 'bca', 'BcaC04g19765' => 'bca', 'BcaC09g48432' => 'bca', 'BcaNung07302' => 'bca', 'BolC2t06040H' => 'bol', 'BolC2t07346H' => 'bol', 'BolC3t13817H' => 'bol', 'BolC4t22625H' => 'bol', 'BolC4t23297H' => 'bol', 'BolC8t51278H' => 'bol', 'BolC9t58050H' => 'bol', 'BolC9t58051H' => 'bol', 'BolC9t60163H' => 'bol', 'BraA02t04712Z' => 'bra', 'BraA02t05791Z' => 'bra', 'BraA03t10483Z' => 'bra', 'BraA05t19795Z' => 'bra', 'BraA05t20276Z' => 'bra', 'BraA09t40827Z' => 'bra', 'BraA10t43750Z' => 'bra', 'BraA10t43751Z' => 'bra', 'BraA10t45370Z' => 'bra', 'C02p00400' => 'bna', 'C02p12460' => 'bna', 'C03p13680' => 'bna', 'C04p10270' => 'bna', 'C04p17500' => 'bna', 'C08p37010' => 'bna', 'C09p51880' => 'bna', 'C09p51890' => 'bna', 'C09p74300' => 'bna', 'CAN.G179.26' => 'can', 'CAN.G3384.1' => 'can', 'CAN.G394.68' => 'can', 'CAN.G907.13' => 'can', 'CANSAT11G0012' => 'cansat', 'CANSAT25G1586' => 'cansat', 'CANSAT35G0735' => 'cansat', 'CANSAT54G0556' => 'cansat', 'CANSAT64G0356' => 'cansat', 'CANSAT78G2042' => 'cansat', 'CARHR125920' => 'chi', 'CARHR131910' => 'chi', 'CARHR172390' => 'chi', 'CARHR211140' => 'chi', 'CARHR285850' => 'chi', 'CARHR285860' => 'chi', 'Carub.0004s1347' => 'cru', 'Carub.0004s1960' => 'cru', 'Carub.0005s2880' => 'cru', 'Carub.0006s0107' => 'cru', 'Carub.0008s2015' => 'cru', 'Carub.0008s2016' => 'cru', 'Carub.0008s2017' => 'cru', 'Ca_01315_v3' => 'car', 'Ca_05063_v3' => 'car', 'Ca_10231_v3' => 'car', 'Ca_10913_v3' => 'car', 'Ca_19156_v3' => 'car', 'Ca_23644_v3' => 'car', 'Ca_26735_v3' => 'car', 'Cc01_g13130' => 'ccan', 'Cc02_g21690' => 'ccan', 'Cc03_g03600' => 'ccan', 'Cc06_g02510' => 'ccan', 'CDE02G1265' => 'cde', 'CDE05G0415' => 'cde', 'CDE08G1082' => 'cde', 'Cfa005780' => 'cfa', 'Cfa011522' => 'cfa', 'Cfa011523' => 'cfa', 'Cfa015627' => 'cfa', 'Cfa017359' => 'cfa', 'Ciclev10005687m.g' => 'ccl', 'Ciclev10012173m.g' => 'ccl', 'Ciclev10021621m.g' => 'ccl', 'Ciclev10028968m.g' => 'ccl', 'Ciclev10029907m.g' => 'ccl', 'CiPaw.01G164800' => 'cil', 'CiPaw.07G083700' => 'cil', 'CiPaw.07G127000' => 'cil', 'CiPaw.07G136900' => 'cil', 'CiPaw.08G081700' => 'cil', 'CiPaw.09G194600' => 'cil', 'CiPaw.10G146500' => 'cil', 'CiPaw.13G091500' => 'cil', 'CiPaw.13G091600' => 'cil', 'ClCG00G003390' => 'cla', 'ClCG01G007220' => 'cla', 'ClCG03G001370' => 'cla', 'ClCG04G008100' => 'cla', 'ClCG06G006110' => 'cla', 'ClCG06G006130' => 'cla', 'ClCG10G021210' => 'cla', 'COL.COLO4_07648' => 'col', 'COL.COLO4_07650' => 'col', 'COL.COLO4_07651' => 'col', 'COL.COLO4_14780' => 'col', 'COL.COLO4_18546' => 'col', 'COL.COLO4_18547' => 'col', 'COL.COLO4_23103' => 'col', 'COL.COLO4_30419' => 'col', 'COL.COLO4_34232' => 'col', 'Cpa.g.sc169.20' => 'cpa', 'Cpa.g.sc57.45' => 'cpa', 'Cpa.g.sc58.124' => 'cpa', 'Cpa.g.sc58.125' => 'cpa', 'Cpa.g.sc81.118' => 'cpa', 'Cpa.g.sc81.119' => 'cpa', 'Cre12.g524700' => 'cre', 'CsaV3_1G034430' => 'csa', 'CsaV3_1G034440' => 'csa', 'CsaV3_1G034450' => 'csa', 'CsaV3_3G034830' => 'csa', 'CsaV3_4G025090' => 'csa', 'CsaV3_5G018660' => 'csa', 'CsaV3_6G038160' => 'csa', 'CSS0003447' => 'camsi', 'CSS0017840' => 'camsi', 'CSS0019260' => 'camsi', 'CSS0040375' => 'camsi', 'CSS0042533' => 'camsi', 'DCAR_005960' => 'dca', 'DCAR_012104' => 'dca', 'DCAR_012105' => 'dca', 'DCAR_012293' => 'dca', 'DCAR_015632' => 'dca', 'DCAR_024602' => 'dca', 'DCAR_028752' => 'dca', 'Dinv06261' => 'din', 'Dinv13982' => 'din', 'Dinv17029' => 'din', 'Dinv18463' => 'din', 'Dinv33181' => 'din', 'Dinv35585' => 'din', 'Dinv37161' => 'din', 'Dinv42977' => 'din', 'Dinv43122' => 'din', 'Dinv44517' => 'din', 'Duzib093G0256' => 'dzi', 'Duzib106G1254' => 'dzi', 'Duzib128G1789' => 'dzi', 'Duzib133G0633' => 'dzi', 'Duzib138G0510' => 'dzi', 'Duzib150G1084' => 'dzi', 'Duzib168G0488' => 'dzi', 'Duzib168G1523' => 'dzi', 'Duzib170G0133' => 'dzi', 'ECA234G1433' => 'eca', 'ECA236G1432' => 'eca', 'ECA236G2256' => 'eca', 'ECA236G2365' => 'eca', 'ECA236G4830' => 'eca', 'ECA248G1505' => 'eca', 'EL10Ac3g06431' => 'bvu', 'EL10Ac5g12577' => 'bvu', 'EL10Ac6g13533' => 'bvu', 'EL10Ac7g16045' => 'bvu', 'Eucgr.A01281' => 'egr', 'Eucgr.B02326' => 'egr', 'Eucgr.H03532' => 'egr', 'Eucgr.K00553' => 'egr', 'Eucgr.K03116' => 'egr', 'FAN02G3963' => 'fan', 'FAN05G0438' => 'fan', 'FAN09G2434' => 'fan', 'FAN12G3984' => 'fan', 'FAN14G0798' => 'fan', 'FAN17G0652' => 'fan', 'FAN19G1988' => 'fan', 'FAN22G0632' => 'fan', 'FAN23G0387' => 'fan', 'FAN26G1323' => 'fan', 'FAN28G0666' => 'fan', 'FvH4_1g26080' => 'fve', 'FvH4_3g36780' => 'fve', 'FvH4_4g15270' => 'fve', 'FvH4_6g13490' => 'fve', 'Glyma.01G098700' => 'gma', 'Glyma.03G065900' => 'gma', 'Glyma.03G073754' => 'gma', 'Glyma.03G073758' => 'gma', 'Glyma.03G083200' => 'gma', 'Glyma.03G225500' => 'gma', 'Glyma.05G037766' => 'gma', 'Glyma.07G133500' => 'gma', 'Glyma.10G139400' => 'gma', 'Glyma.10G248900' => 'gma', 'Glyma.11G137800' => 'gma', 'Glyma.12G061300' => 'gma', 'Glyma.13G337900' => 'gma', 'Glyma.15G036600' => 'gma', 'Glyma.18G182800' => 'gma', 'Glyma.19G222500' => 'gma', 'Glyma.20G144800' => 'gma', 'Gohir.A01G222000' => 'ghi', 'Gohir.A03G044000' => 'ghi', 'Gohir.A03G044100' => 'ghi', 'Gohir.A04G083100' => 'ghi', 'Gohir.A07G127200' => 'ghi', 'Gohir.A07G132400' => 'ghi', 'Gohir.A08G000700' => 'ghi', 'Gohir.A11G327300' => 'ghi', 'Gohir.D01G211500' => 'ghi', 'Gohir.D03G123400' => 'ghi', 'Gohir.D03G123500' => 'ghi', 'Gohir.D04G121800' => 'ghi', 'Gohir.D07G131500' => 'ghi', 'Gohir.D07G136600' => 'ghi', 'Gohir.D08G011600' => 'ghi', 'Gohir.D11G346200' => 'ghi', 'Gorai.001G142800' => 'gra', 'Gorai.001G148700' => 'gra', 'Gorai.002G257300' => 'gra', 'Gorai.003G130000' => 'gra', 'Gorai.003G130100' => 'gra', 'Gorai.004G005300' => 'gra', 'Gorai.007G376500' => 'gra', 'Gorai.012G104700' => 'gra', 'GSVIVG01017946001' => 'vvi', 'GSVIVG01024928001' => 'vvi', 'GSVIVG01028227001' => 'vvi', 'GSVIVG01034151001' => 'vvi', 'HanXRQChr05g0135031' => 'han', 'HanXRQChr05g0135041' => 'han', 'HanXRQChr05g0140021' => 'han', 'HanXRQChr06g0178981' => 'han', 'HanXRQChr07g0188251' => 'han', 'HanXRQChr08g0235311' => 'han', 'HanXRQChr09g0271011' => 'han', 'HanXRQChr10g0293321' => 'han', 'HanXRQChr13g0388171' => 'han', 'Haze_00916' => 'cav', 'Haze_05063' => 'cav', 'Haze_20814' => 'cav', 'Haze_24128' => 'cav', 'Hma1.2p1_0745F.1_g212010' => 'hma', 'Hma1.2p1_0757F.1_g213260' => 'hma', 'Hma1.2p1_0936F.1_g238840' => 'hma', 'Hma1.2p1_1735F.1_g299890' => 'hma', 'Hma1.2p1_1861F.1_g305685' => 'hma', 'HPP92_003397' => 'vpl', 'HPP92_012597' => 'vpl', 'HPP92_015520' => 'vpl', 'HPP92_015539' => 'vpl', 'HPP92_020373' => 'vpl', 'Hund04938' => 'sun', 'Hund10677' => 'sun', 'Hund11033' => 'sun', 'Hund12155' => 'sun', 'Lalb_Chr01g0022551' => 'lal', 'Lalb_Chr03g0042341' => 'lal', 'Lalb_Chr07g0192931' => 'lal', 'Lalb_Chr12g0209551' => 'lal', 'Lalb_Chr19g0125251' => 'lal', 'Lalb_Chr19g0137891' => 'lal', 'Lalb_Chr21g0304641' => 'lal', 'Lalb_Chr21g0309881' => 'lal', 'Lj1A5T12' => 'lonja', 'Lj1C148G10' => 'lonja', 'Lj2A93T83' => 'lonja', 'Lj3A738G68' => 'lonja', 'Lj3C966T1' => 'lonja', 'Lj3g0018958' => 'lja', 'Lj3g0021831' => 'lja', 'Lj3g0025443' => 'lja', 'Lj4g0026809' => 'lja', 'Lj5g0012558' => 'lja', 'Lj5g0021586' => 'lja', 'Lsat_1_v5_gn_5_156840' => 'lsa', 'Lsat_1_v5_gn_8_73460' => 'lsa', 'Lsat_1_v5_gn_8_73481' => 'lsa', 'Lsat_1_v5_gn_9_31601' => 'lsa', 'Lsat_1_v5_gn_9_77320' => 'lsa', 'Manes.01G171300' => 'mes', 'Manes.01G171400' => 'mes', 'Manes.01G236100' => 'mes', 'Manes.02G130500' => 'mes', 'Manes.02G130600' => 'mes', 'Manes.03G180200' => 'mes', 'Manes.05G007000' => 'mes', 'Manes.08G084400' => 'mes', 'Manes.09G092600' => 'mes', 'Manes.15G027900' => 'mes', 'MBI04_g40948_MAGBIO' => 'mbi', 'MBI14_g12123_MAGBIO' => 'mbi', 'MBI18_g28915_MAGBIO' => 'mbi', 'MCO09G053' => 'mco', 'MCO11G782' => 'mco', 'MCO15G215' => 'mco', 'MD03G1088500' => 'mdo', 'MD03G1088600' => 'mdo', 'MD04G1130800' => 'mdo', 'MD09G1291700' => 'mdo', 'MD11G1097500' => 'mdo', 'MD11G1097600' => 'mdo', 'MD12G1143900' => 'mdo', 'MD13G1191400' => 'mdo', 'MD16G1191500' => 'mdo', 'Medtr1g085570' => 'mtr', 'Medtr1g104610' => 'mtr', 'Medtr2g097520' => 'mtr', 'Medtr4g021800' => 'mtr', 'Medtr4g021825' => 'mtr', 'Medtr4g064270' => 'mtr', 'Medtr4g064380' => 'mtr', 'Medtr7g062150' => 'mtr', 'MELO3C003138.2' => 'cme', 'MELO3C005187.2' => 'cme', 'MELO3C009252.2' => 'cme', 'MELO3C014481.2' => 'cme', 'MELO3C020616.2' => 'cme', 'MELO3C020617.2' => 'cme', 'MELO3C020618.2' => 'cme', 'Migut.G00328' => 'egut', 'Migut.J00320' => 'egut', 'Migut.L01000' => 'egut', 'Migut.L01953' => 'egut', 'MSTRG.10253' => 'ama', 'MSTRG.19077' => 'ama', 'MSTRG.26780' => 'ama', 'MSTRG.4023' => 'ama', 'MSTRG.5655' => 'ama', 'MSTRG.9992' => 'ama', 'Nitab4.5_0000043g0310' => 'nta', 'Nitab4.5_0000463g0080' => 'nta', 'Nitab4.5_0000705g0170' => 'nta', 'Nitab4.5_0001326g0060' => 'nta', 'Nitab4.5_0001628g0030' => 'nta', 'Nitab4.5_0002103g0110' => 'nta', 'Nitab4.5_0002946g0030' => 'nta', 'Nitab4.5_0004639g0030' => 'nta', 'Nn2g11149' => 'nnu', 'Nn2g13389' => 'nnu', 'Nn4g25326' => 'nnu', 'Nn4g26290' => 'nnu', 'Nn5g29865' => 'nnu', 'Oeu004163.1' => 'oeu', 'Oeu006901.1' => 'oeu', 'Oeu010096.1' => 'oeu', 'Oeu024340.1' => 'oeu', 'Oeu048369.1' => 'oeu', 'Os01g0973000' => 'osa', 'Os03g0273800' => 'osa', 'Os03g0701200' => 'osa', 'Os03g0834050' => 'osa', 'Os07g0634400' => 'osa', 'Peaxi162Scf00092g01414' => 'pax', 'Peaxi162Scf00165g00818' => 'pax', 'Peaxi162Scf00309g00516' => 'pax', 'Peaxi162Scf00774g00218' => 'pax', 'PGR004G1824' => 'pgr', 'PGR004G2606' => 'pgr', 'PGR031G2716' => 'pgr', 'PGR102G2460' => 'pgr', 'PGR142G2599' => 'pgr', 'PGSC0003DMG400000843' => 'stu', 'PGSC0003DMG400008829' => 'stu', 'PGSC0003DMG400030418' => 'stu', 'PGSC0003DMG400031834' => 'stu', 'PGSC0003DMG401028300' => 'stu', 'PGSC0003DMG402028300' => 'stu', 'Phvul.001G219300' => 'pvu', 'Phvul.007G056000' => 'pvu', 'Phvul.007G208000' => 'pvu', 'Phvul.008G119500' => 'pvu', 'Phvul.010G011200' => 'pvu', 'Phvul.010G014800' => 'pvu', 'Phvul.011G062900' => 'pvu', 'Phvul.L007043' => 'pvu', 'Potri.001G242300' => 'ptr', 'Potri.002G185300' => 'ptr', 'Potri.006G086900' => 'ptr', 'Potri.008G151700' => 'ptr', 'Potri.009G033500' => 'ptr', 'Potri.010G089300' => 'ptr', 'Potri.014G110800' => 'ptr', 'Pp3c27_8130' => 'ppa', 'Pp3c6_27410' => 'ppa', 'PRCOL_00001659' => 'pco', 'PRCOL_00001927' => 'pco', 'PRCOL_00003649' => 'pco', 'Prupe.1G011600' => 'ppe', 'Prupe.3G000800' => 'ppe', 'Prupe.3G001100' => 'ppe', 'Prupe.6G072700' => 'ppe', 'Prupe.6G072800' => 'ppe', 'Prupe.6G257300' => 'ppe', 'Prupe.8G033000' => 'ppe', 'Psat0s2633g0080' => 'psa', 'Psat0s3396g0080' => 'psa', 'Psat0s3396g0200' => 'psa', 'Psat3g139080' => 'psa', 'Psat5g285080' => 'psa', 'Psat6g157760' => 'psa', 'Psat6g208440' => 'psa', 'Psat7g215320' => 'psa', 'Psat7g215400' => 'psa', 'Psat7g235600' => 'psa', 'Psat7g235760' => 'psa', 'PSO063G4603' => 'pso', 'PSO210G0182' => 'pso', 'PSO210G0196' => 'pso', 'PSO339G0394' => 'pso', 'PSO339G4127' => 'pso', 'PSO513G0064' => 'pso', 'PSO761G0079' => 'pso', 'QL01p031003' => 'qlo', 'QL01p031078' => 'qlo', 'QL06p003004' => 'qlo', 'QL07p048731' => 'qlo', 'QL09p037427' => 'qlo', 'RcHm_v2.0_Chr3g0466361' => 'rch', 'RcHm_v2.0_Chr3g0485571' => 'rch', 'RcHm_v2.0_Chr4g0416551' => 'rch', 'RcHm_v2.0_Chr5g0065831' => 'rch', 'Rhsim01G0230500' => 'rsi', 'Rhsim05G0194000' => 'rsi', 'Rhsim08G0250400' => 'rsi', 'Sabra02G0131000' => 'sbr', 'Sabra06G0066300' => 'sbr', 'Sabra08G0115500' => 'sbr', 'Sabra09G0023900' => 'sbr', 'Sabra10G0054000' => 'sbr', 'Sabra14G0081500' => 'sbr', 'Sabra16G0147100' => 'sbr', 'SalBow2G2957' => 'sbo', 'SalBow4G3320' => 'sbo', 'SalBow8G1894' => 'sbo', 'Sc07g0007950' => 'sci', 'Sc12g0001360' => 'sci', 'Sc13g0004330' => 'sci', 'Sc20g0005010' => 'sci', 'Sed0000361' => 'sed', 'Sed0001706' => 'sed', 'Sed0002422' => 'sed', 'Sed0004029' => 'sed', 'Sed0004602' => 'sed', 'Sed0004943' => 'sed', 'Sed0008646' => 'sed', 'Sed0023313' => 'sed', 'Sed0024843' => 'sed', 'SEGI_00081' => 'sgi', 'SEGI_00947' => 'sgi', 'SEGI_04046' => 'sgi', 'SEGI_06880' => 'sgi', 'SEGI_09736' => 'sgi', 'SEGI_12741' => 'sgi', 'SEGI_14530' => 'sgi', 'SEGI_20705' => 'sgi', 'SEGI_26088' => 'sgi', 'SEGI_28323' => 'sgi', 'SEGI_33343' => 'sgi', 'SGA_v2.0_scaffold126G33775' => 'sas', 'SGA_v2.0_scaffold2G01337' => 'sas', 'SGA_v2.0_scaffold38G15006' => 'sas', 'SGA_v2.0_scaffold39G15264' => 'sas', 'SGA_v2.0_scaffold453G51880' => 'sas', 'SHI12696' => 'shi', 'SMO367G1096' => 'smo', 'Solyc01g068630.3' => 'sly', 'Solyc05g011880.3' => 'sly', 'Solyc06g076300.3' => 'sly', 'Solyc09g010940.4' => 'sly', 'Solyc09g075890.3' => 'sly', 'Sopen01g030560' => 'spe', 'Sopen05g006630' => 'spe', 'Sopen06g032720' => 'spe', 'Sopen09g005660' => 'spe', 'Sopen09g030690' => 'spe', 'Sp4g14540' => 'spa', 'Sp4g20030' => 'spa', 'Sp5g01320' => 'spa', 'Sp6g21170' => 'spa', 'Sp6g21180' => 'spa', 'Sp6g21190' => 'spa', 'Sp6g40220' => 'spa', 'TAR362G0122' => 'tar', 'TAR362G1338' => 'tar', 'TAR369G0590' => 'tar', 'TAR371G0824' => 'tar', 'TAR622G1429' => 'tar', 'TAR623G0734' => 'tar', 'TAR625G0441' => 'tar', 'TAR629G0976' => 'tar', 'TAR633G1195' => 'tar', 'TAR636G2660' => 'tar', 'THA.LOC104799440' => 'tha', 'THA.LOC104800966' => 'tha', 'THA.LOC104806559' => 'tha', 'THA.LOC104810765' => 'tha', 'THA.LOC104816266' => 'tha', 'THA.LOC104817419' => 'tha', 'THA.LOC104827021' => 'tha', 'Thecc.01G327400' => 'tca', 'Thecc.04G229200' => 'tca', 'Thecc.05G037400' => 'tca', 'Thecc.09G318600' => 'tca', 'Thecc.09G318700' => 'tca', 'Thhalv10006238m.g' => 'esa', 'Thhalv10014321m.g' => 'esa', 'Thhalv10014335m.g' => 'esa', 'Thhalv10015826m.g' => 'esa', 'Thhalv10017107m.g' => 'esa', 'Thhalv10017180m.g' => 'esa', 'Thhalv10029339m.g' => 'esa', 'TPR.G1699' => 'tpr', 'TPR.G23609' => 'tpr', 'TPR.G3081' => 'tpr', 'TPR.G40397' => 'tpr', 'TPR.G5522' => 'tpr', 'TPR.G5618' => 'tpr', 'TPR.G5626' => 'tpr', 'TWI09G1632' => 'twi', 'TWI23G1230' => 'twi', 'TWI53G1064' => 'twi', 'TWI59G0751' => 'twi', 'TWI74G0947' => 'twi', 'TWI77G0337' => 'twi', 'TWI79G1254' => 'twi', 'unitig_0.g2341' => 'ugi', 'unitig_26.g10006' => 'ugi', 'unitig_26.g10008' => 'ugi', 'unitig_26.g9192' => 'ugi', 'vmacro14547' => 'vma', 'vmacro15333' => 'vma', 'vmacro18743' => 'vma', 'vmacro20166' => 'vma', 'VMungo0331G0523' => 'vmu', 'VMungo0331G1202' => 'vmu', 'VMungo0720G1228' => 'vmu', 'VMungo0720G1514' => 'vmu', 'VMungo1080G0169' => 'vmu', 'VMungo1127G1475' => 'vmu', 'VMungo1383G1208' => 'vmu', 'VMungo1383G1698' => 'vmu', 'Zm00001eb012270' => 'zma', 'Zm00001eb054100' => 'zma', 'Zm00001eb063350' => 'zma', 'Zm00001eb328560' => 'zma', 'Zm00001eb342820' => 'zma', 'Zm00001eb362210' => 'zma', 'Zm00001eb397730' => 'zma', 'Zm00001eb399750' => 'zma' ), 'gf_id' => 'HOM05D000959', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000959' ), 'data_identifier' => 'HOM05D000959', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000959', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '622', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p07100' => 'bna', 'A03p11720' => 'bna', 'A05p08300' => 'bna', 'A05p13380' => 'bna', 'A09p54130' => 'bna', 'A10p16690' => 'bna', 'A10p16700' => 'bna', 'A10p33390' => 'bna', 'Aa31LG10G16020' => 'aar', 'Aa31LG1G11810' => 'aar', 'Aa31LG1G11830' => 'aar', 'Aa31LG1G22510' => 'aar', 'Aa31LG5G4890' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5793' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2310' => 'aag', 'Actinidia08499' => 'ach', 'Actinidia11262' => 'ach', 'Actinidia23926' => 'ach', 'Actinidia34420' => 'ach', 'Actinidia36970' => 'ach', 'Ah.02g111220' => 'amhyb', 'Ah.15g097750' => 'amhyb', 'AL4G27500' => 'aly', 'AL6G11470' => 'aly', 'AL8G35950' => 'aly', 'AL8G35960' => 'aly', 'AL8G35970' => 'aly', 'Aqoxy1G00912' => 'aox', 'Aqoxy2G02253' => 'aox', 'Aqoxy2G02411' => 'aox', 'Aqoxy5G00485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BZ66YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K8ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM4FUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6BF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HFV7XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25JBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0YNNV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MAKK6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P70IT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP2Z6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V61LZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YWP64R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3S9AI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7PGHH' => 'arhy', 'AT2G32150' => 'ath', 'AT3G62040' => 'ath', 'AT5G02230' => 'ath', 'AT5G59480' => 'ath', 'AT5G59490' => 'ath', 'ATR0332G060' => 'atr', 'ATR0559G190' => 'atr', 'ATR0693G294' => 'atr', 'Atru.chr3.3975' => 'acertr', 'Atru.chr3.3976' => 'acertr', 'Atru.chr3.3977' => 'acertr', 'Atru.chr4.2498' => 'acertr', 'Atru.chr5.838' => 'acertr', 'Atru.chr8.1990' => 'acertr', 'Atru.chr8.1991' => 'acertr', 'Atru.chr8.1992' => 'acertr', 'AUR62001759' => 'cqu', 'AUR62009545' => 'cqu', 'AUR62010474' => 'cqu', 'AUR62025820' => 'cqu', 'AUR62030422' => 'cqu', 'AUR62033605' => 'cqu', 'AUR62038615' => 'cqu', 'AUR62041347' => 'cqu', 'BcaB01g04574' => 'bca', 'BcaB02g09263' => 'bca', 'BcaB02g10453' => 'bca', 'BcaB05g22513' => 'bca', 'BcaB08g36253' => 'bca', 'BcaB08g36254' => 'bca', 'BcaC01g06519' => 'bca', 'BcaC02g11889' => 'bca', 'BcaC03g14010' => 'bca', 'BcaC03g18439' => 'bca', 'BcaC04g19765' => 'bca', 'BcaC09g48432' => 'bca', 'BcaNung07302' => 'bca', 'BolC2t06040H' => 'bol', 'BolC2t07346H' => 'bol', 'BolC3t13817H' => 'bol', 'BolC4t22625H' => 'bol', 'BolC4t23297H' => 'bol', 'BolC8t51278H' => 'bol', 'BolC9t58050H' => 'bol', 'BolC9t58051H' => 'bol', 'BolC9t60163H' => 'bol', 'BraA02t04712Z' => 'bra', 'BraA02t05791Z' => 'bra', 'BraA03t10483Z' => 'bra', 'BraA05t19795Z' => 'bra', 'BraA05t20276Z' => 'bra', 'BraA09t40827Z' => 'bra', 'BraA10t43750Z' => 'bra', 'BraA10t43751Z' => 'bra', 'BraA10t45370Z' => 'bra', 'C02p00400' => 'bna', 'C02p12460' => 'bna', 'C03p13680' => 'bna', 'C04p10270' => 'bna', 'C04p17500' => 'bna', 'C08p37010' => 'bna', 'C09p51880' => 'bna', 'C09p51890' => 'bna', 'C09p74300' => 'bna', 'CAN.G179.26' => 'can', 'CAN.G3384.1' => 'can', 'CAN.G394.68' => 'can', 'CAN.G907.13' => 'can', 'CANSAT11G0012' => 'cansat', 'CANSAT25G1586' => 'cansat', 'CANSAT35G0735' => 'cansat', 'CANSAT54G0556' => 'cansat', 'CANSAT64G0356' => 'cansat', 'CANSAT78G2042' => 'cansat', 'CARHR125920' => 'chi', 'CARHR131910' => 'chi', 'CARHR172390' => 'chi', 'CARHR211140' => 'chi', 'CARHR285850' => 'chi', 'CARHR285860' => 'chi', 'Carub.0004s1347' => 'cru', 'Carub.0004s1960' => 'cru', 'Carub.0005s2880' => 'cru', 'Carub.0006s0107' => 'cru', 'Carub.0008s2015' => 'cru', 'Carub.0008s2016' => 'cru', 'Carub.0008s2017' => 'cru', 'Ca_01315_v3' => 'car', 'Ca_05063_v3' => 'car', 'Ca_10231_v3' => 'car', 'Ca_10913_v3' => 'car', 'Ca_19156_v3' => 'car', 'Ca_23644_v3' => 'car', 'Ca_26735_v3' => 'car', 'Cc01_g13130' => 'ccan', 'Cc02_g21690' => 'ccan', 'Cc03_g03600' => 'ccan', 'Cc06_g02510' => 'ccan', 'CDE02G1265' => 'cde', 'CDE05G0415' => 'cde', 'CDE08G1082' => 'cde', 'Cfa005780' => 'cfa', 'Cfa011522' => 'cfa', 'Cfa011523' => 'cfa', 'Cfa015627' => 'cfa', 'Cfa017359' => 'cfa', 'Ciclev10005687m.g' => 'ccl', 'Ciclev10012173m.g' => 'ccl', 'Ciclev10021621m.g' => 'ccl', 'Ciclev10028968m.g' => 'ccl', 'Ciclev10029907m.g' => 'ccl', 'CiPaw.01G164800' => 'cil', 'CiPaw.07G083700' => 'cil', 'CiPaw.07G127000' => 'cil', 'CiPaw.07G136900' => 'cil', 'CiPaw.08G081700' => 'cil', 'CiPaw.09G194600' => 'cil', 'CiPaw.10G146500' => 'cil', 'CiPaw.13G091500' => 'cil', 'CiPaw.13G091600' => 'cil', 'ClCG00G003390' => 'cla', 'ClCG01G007220' => 'cla', 'ClCG03G001370' => 'cla', 'ClCG04G008100' => 'cla', 'ClCG06G006110' => 'cla', 'ClCG06G006130' => 'cla', 'ClCG10G021210' => 'cla', 'COL.COLO4_07648' => 'col', 'COL.COLO4_07650' => 'col', 'COL.COLO4_07651' => 'col', 'COL.COLO4_14780' => 'col', 'COL.COLO4_18546' => 'col', 'COL.COLO4_18547' => 'col', 'COL.COLO4_23103' => 'col', 'COL.COLO4_30419' => 'col', 'COL.COLO4_34232' => 'col', 'Cpa.g.sc169.20' => 'cpa', 'Cpa.g.sc57.45' => 'cpa', 'Cpa.g.sc58.124' => 'cpa', 'Cpa.g.sc58.125' => 'cpa', 'Cpa.g.sc81.118' => 'cpa', 'Cpa.g.sc81.119' => 'cpa', 'Cre12.g524700' => 'cre', 'CsaV3_1G034430' => 'csa', 'CsaV3_1G034440' => 'csa', 'CsaV3_1G034450' => 'csa', 'CsaV3_3G034830' => 'csa', 'CsaV3_4G025090' => 'csa', 'CsaV3_5G018660' => 'csa', 'CsaV3_6G038160' => 'csa', 'CSS0003447' => 'camsi', 'CSS0017840' => 'camsi', 'CSS0019260' => 'camsi', 'CSS0040375' => 'camsi', 'CSS0042533' => 'camsi', 'DCAR_005960' => 'dca', 'DCAR_012104' => 'dca', 'DCAR_012105' => 'dca', 'DCAR_012293' => 'dca', 'DCAR_015632' => 'dca', 'DCAR_024602' => 'dca', 'DCAR_028752' => 'dca', 'Dinv06261' => 'din', 'Dinv13982' => 'din', 'Dinv17029' => 'din', 'Dinv18463' => 'din', 'Dinv33181' => 'din', 'Dinv35585' => 'din', 'Dinv37161' => 'din', 'Dinv42977' => 'din', 'Dinv43122' => 'din', 'Dinv44517' => 'din', 'Duzib093G0256' => 'dzi', 'Duzib106G1254' => 'dzi', 'Duzib128G1789' => 'dzi', 'Duzib133G0633' => 'dzi', 'Duzib138G0510' => 'dzi', 'Duzib150G1084' => 'dzi', 'Duzib168G0488' => 'dzi', 'Duzib168G1523' => 'dzi', 'Duzib170G0133' => 'dzi', 'ECA234G1433' => 'eca', 'ECA236G1432' => 'eca', 'ECA236G2256' => 'eca', 'ECA236G2365' => 'eca', 'ECA236G4830' => 'eca', 'ECA248G1505' => 'eca', 'EL10Ac3g06431' => 'bvu', 'EL10Ac5g12577' => 'bvu', 'EL10Ac6g13533' => 'bvu', 'EL10Ac7g16045' => 'bvu', 'Eucgr.A01281' => 'egr', 'Eucgr.B02326' => 'egr', 'Eucgr.H03532' => 'egr', 'Eucgr.K00553' => 'egr', 'Eucgr.K03116' => 'egr', 'FAN02G3963' => 'fan', 'FAN05G0438' => 'fan', 'FAN09G2434' => 'fan', 'FAN12G3984' => 'fan', 'FAN14G0798' => 'fan', 'FAN17G0652' => 'fan', 'FAN19G1988' => 'fan', 'FAN22G0632' => 'fan', 'FAN23G0387' => 'fan', 'FAN26G1323' => 'fan', 'FAN28G0666' => 'fan', 'FvH4_1g26080' => 'fve', 'FvH4_3g36780' => 'fve', 'FvH4_4g15270' => 'fve', 'FvH4_6g13490' => 'fve', 'Glyma.01G098700' => 'gma', 'Glyma.03G065900' => 'gma', 'Glyma.03G073754' => 'gma', 'Glyma.03G073758' => 'gma', 'Glyma.03G083200' => 'gma', 'Glyma.03G225500' => 'gma', 'Glyma.05G037766' => 'gma', 'Glyma.07G133500' => 'gma', 'Glyma.10G139400' => 'gma', 'Glyma.10G248900' => 'gma', 'Glyma.11G137800' => 'gma', 'Glyma.12G061300' => 'gma', 'Glyma.13G337900' => 'gma', 'Glyma.15G036600' => 'gma', 'Glyma.18G182800' => 'gma', 'Glyma.19G222500' => 'gma', 'Glyma.20G144800' => 'gma', 'Gohir.A01G222000' => 'ghi', 'Gohir.A03G044000' => 'ghi', 'Gohir.A03G044100' => 'ghi', 'Gohir.A04G083100' => 'ghi', 'Gohir.A07G127200' => 'ghi', 'Gohir.A07G132400' => 'ghi', 'Gohir.A08G000700' => 'ghi', 'Gohir.A11G327300' => 'ghi', 'Gohir.D01G211500' => 'ghi', 'Gohir.D03G123400' => 'ghi', 'Gohir.D03G123500' => 'ghi', 'Gohir.D04G121800' => 'ghi', 'Gohir.D07G131500' => 'ghi', 'Gohir.D07G136600' => 'ghi', 'Gohir.D08G011600' => 'ghi', 'Gohir.D11G346200' => 'ghi', 'Gorai.001G142800' => 'gra', 'Gorai.001G148700' => 'gra', 'Gorai.002G257300' => 'gra', 'Gorai.003G130000' => 'gra', 'Gorai.003G130100' => 'gra', 'Gorai.004G005300' => 'gra', 'Gorai.007G376500' => 'gra', 'Gorai.012G104700' => 'gra', 'GSVIVG01017946001' => 'vvi', 'GSVIVG01024928001' => 'vvi', 'GSVIVG01028227001' => 'vvi', 'GSVIVG01034151001' => 'vvi', 'HanXRQChr05g0135031' => 'han', 'HanXRQChr05g0135041' => 'han', 'HanXRQChr05g0140021' => 'han', 'HanXRQChr06g0178981' => 'han', 'HanXRQChr07g0188251' => 'han', 'HanXRQChr08g0235311' => 'han', 'HanXRQChr09g0271011' => 'han', 'HanXRQChr10g0293321' => 'han', 'HanXRQChr13g0388171' => 'han', 'Haze_00916' => 'cav', 'Haze_05063' => 'cav', 'Haze_20814' => 'cav', 'Haze_24128' => 'cav', 'Hma1.2p1_0745F.1_g212010' => 'hma', 'Hma1.2p1_0757F.1_g213260' => 'hma', 'Hma1.2p1_0936F.1_g238840' => 'hma', 'Hma1.2p1_1735F.1_g299890' => 'hma', 'Hma1.2p1_1861F.1_g305685' => 'hma', 'HPP92_003397' => 'vpl', 'HPP92_012597' => 'vpl', 'HPP92_015520' => 'vpl', 'HPP92_015539' => 'vpl', 'HPP92_020373' => 'vpl', 'Hund04938' => 'sun', 'Hund10677' => 'sun', 'Hund11033' => 'sun', 'Hund12155' => 'sun', 'Lalb_Chr01g0022551' => 'lal', 'Lalb_Chr03g0042341' => 'lal', 'Lalb_Chr07g0192931' => 'lal', 'Lalb_Chr12g0209551' => 'lal', 'Lalb_Chr19g0125251' => 'lal', 'Lalb_Chr19g0137891' => 'lal', 'Lalb_Chr21g0304641' => 'lal', 'Lalb_Chr21g0309881' => 'lal', 'Lj1A5T12' => 'lonja', 'Lj1C148G10' => 'lonja', 'Lj2A93T83' => 'lonja', 'Lj3A738G68' => 'lonja', 'Lj3C966T1' => 'lonja', 'Lj3g0018958' => 'lja', 'Lj3g0021831' => 'lja', 'Lj3g0025443' => 'lja', 'Lj4g0026809' => 'lja', 'Lj5g0012558' => 'lja', 'Lj5g0021586' => 'lja', 'Lsat_1_v5_gn_5_156840' => 'lsa', 'Lsat_1_v5_gn_8_73460' => 'lsa', 'Lsat_1_v5_gn_8_73481' => 'lsa', 'Lsat_1_v5_gn_9_31601' => 'lsa', 'Lsat_1_v5_gn_9_77320' => 'lsa', 'Manes.01G171300' => 'mes', 'Manes.01G171400' => 'mes', 'Manes.01G236100' => 'mes', 'Manes.02G130500' => 'mes', 'Manes.02G130600' => 'mes', 'Manes.03G180200' => 'mes', 'Manes.05G007000' => 'mes', 'Manes.08G084400' => 'mes', 'Manes.09G092600' => 'mes', 'Manes.15G027900' => 'mes', 'MBI04_g40948_MAGBIO' => 'mbi', 'MBI14_g12123_MAGBIO' => 'mbi', 'MBI18_g28915_MAGBIO' => 'mbi', 'MCO09G053' => 'mco', 'MCO11G782' => 'mco', 'MCO15G215' => 'mco', 'MD03G1088500' => 'mdo', 'MD03G1088600' => 'mdo', 'MD04G1130800' => 'mdo', 'MD09G1291700' => 'mdo', 'MD11G1097500' => 'mdo', 'MD11G1097600' => 'mdo', 'MD12G1143900' => 'mdo', 'MD13G1191400' => 'mdo', 'MD16G1191500' => 'mdo', 'Medtr1g085570' => 'mtr', 'Medtr1g104610' => 'mtr', 'Medtr2g097520' => 'mtr', 'Medtr4g021800' => 'mtr', 'Medtr4g021825' => 'mtr', 'Medtr4g064270' => 'mtr', 'Medtr4g064380' => 'mtr', 'Medtr7g062150' => 'mtr', 'MELO3C003138.2' => 'cme', 'MELO3C005187.2' => 'cme', 'MELO3C009252.2' => 'cme', 'MELO3C014481.2' => 'cme', 'MELO3C020616.2' => 'cme', 'MELO3C020617.2' => 'cme', 'MELO3C020618.2' => 'cme', 'Migut.G00328' => 'egut', 'Migut.J00320' => 'egut', 'Migut.L01000' => 'egut', 'Migut.L01953' => 'egut', 'MSTRG.10253' => 'ama', 'MSTRG.19077' => 'ama', 'MSTRG.26780' => 'ama', 'MSTRG.4023' => 'ama', 'MSTRG.5655' => 'ama', 'MSTRG.9992' => 'ama', 'Nitab4.5_0000043g0310' => 'nta', 'Nitab4.5_0000463g0080' => 'nta', 'Nitab4.5_0000705g0170' => 'nta', 'Nitab4.5_0001326g0060' => 'nta', 'Nitab4.5_0001628g0030' => 'nta', 'Nitab4.5_0002103g0110' => 'nta', 'Nitab4.5_0002946g0030' => 'nta', 'Nitab4.5_0004639g0030' => 'nta', 'Nn2g11149' => 'nnu', 'Nn2g13389' => 'nnu', 'Nn4g25326' => 'nnu', 'Nn4g26290' => 'nnu', 'Nn5g29865' => 'nnu', 'Oeu004163.1' => 'oeu', 'Oeu006901.1' => 'oeu', 'Oeu010096.1' => 'oeu', 'Oeu024340.1' => 'oeu', 'Oeu048369.1' => 'oeu', 'Os01g0973000' => 'osa', 'Os03g0273800' => 'osa', 'Os03g0701200' => 'osa', 'Os03g0834050' => 'osa', 'Os07g0634400' => 'osa', 'Peaxi162Scf00092g01414' => 'pax', 'Peaxi162Scf00165g00818' => 'pax', 'Peaxi162Scf00309g00516' => 'pax', 'Peaxi162Scf00774g00218' => 'pax', 'PGR004G1824' => 'pgr', 'PGR004G2606' => 'pgr', 'PGR031G2716' => 'pgr', 'PGR102G2460' => 'pgr', 'PGR142G2599' => 'pgr', 'PGSC0003DMG400000843' => 'stu', 'PGSC0003DMG400008829' => 'stu', 'PGSC0003DMG400030418' => 'stu', 'PGSC0003DMG400031834' => 'stu', 'PGSC0003DMG401028300' => 'stu', 'PGSC0003DMG402028300' => 'stu', 'Phvul.001G219300' => 'pvu', 'Phvul.007G056000' => 'pvu', 'Phvul.007G208000' => 'pvu', 'Phvul.008G119500' => 'pvu', 'Phvul.010G011200' => 'pvu', 'Phvul.010G014800' => 'pvu', 'Phvul.011G062900' => 'pvu', 'Phvul.L007043' => 'pvu', 'Potri.001G242300' => 'ptr', 'Potri.002G185300' => 'ptr', 'Potri.006G086900' => 'ptr', 'Potri.008G151700' => 'ptr', 'Potri.009G033500' => 'ptr', 'Potri.010G089300' => 'ptr', 'Potri.014G110800' => 'ptr', 'Pp3c27_8130' => 'ppa', 'Pp3c6_27410' => 'ppa', 'PRCOL_00001659' => 'pco', 'PRCOL_00001927' => 'pco', 'PRCOL_00003649' => 'pco', 'Prupe.1G011600' => 'ppe', 'Prupe.3G000800' => 'ppe', 'Prupe.3G001100' => 'ppe', 'Prupe.6G072700' => 'ppe', 'Prupe.6G072800' => 'ppe', 'Prupe.6G257300' => 'ppe', 'Prupe.8G033000' => 'ppe', 'Psat0s2633g0080' => 'psa', 'Psat0s3396g0080' => 'psa', 'Psat0s3396g0200' => 'psa', 'Psat3g139080' => 'psa', 'Psat5g285080' => 'psa', 'Psat6g157760' => 'psa', 'Psat6g208440' => 'psa', 'Psat7g215320' => 'psa', 'Psat7g215400' => 'psa', 'Psat7g235600' => 'psa', 'Psat7g235760' => 'psa', 'PSO063G4603' => 'pso', 'PSO210G0182' => 'pso', 'PSO210G0196' => 'pso', 'PSO339G0394' => 'pso', 'PSO339G4127' => 'pso', 'PSO513G0064' => 'pso', 'PSO761G0079' => 'pso', 'QL01p031003' => 'qlo', 'QL01p031078' => 'qlo', 'QL06p003004' => 'qlo', 'QL07p048731' => 'qlo', 'QL09p037427' => 'qlo', 'RcHm_v2.0_Chr3g0466361' => 'rch', 'RcHm_v2.0_Chr3g0485571' => 'rch', 'RcHm_v2.0_Chr4g0416551' => 'rch', 'RcHm_v2.0_Chr5g0065831' => 'rch', 'Rhsim01G0230500' => 'rsi', 'Rhsim05G0194000' => 'rsi', 'Rhsim08G0250400' => 'rsi', 'Sabra02G0131000' => 'sbr', 'Sabra06G0066300' => 'sbr', 'Sabra08G0115500' => 'sbr', 'Sabra09G0023900' => 'sbr', 'Sabra10G0054000' => 'sbr', 'Sabra14G0081500' => 'sbr', 'Sabra16G0147100' => 'sbr', 'SalBow2G2957' => 'sbo', 'SalBow4G3320' => 'sbo', 'SalBow8G1894' => 'sbo', 'Sc07g0007950' => 'sci', 'Sc12g0001360' => 'sci', 'Sc13g0004330' => 'sci', 'Sc20g0005010' => 'sci', 'Sed0000361' => 'sed', 'Sed0001706' => 'sed', 'Sed0002422' => 'sed', 'Sed0004029' => 'sed', 'Sed0004602' => 'sed', 'Sed0004943' => 'sed', 'Sed0008646' => 'sed', 'Sed0023313' => 'sed', 'Sed0024843' => 'sed', 'SEGI_00081' => 'sgi', 'SEGI_00947' => 'sgi', 'SEGI_04046' => 'sgi', 'SEGI_06880' => 'sgi', 'SEGI_09736' => 'sgi', 'SEGI_12741' => 'sgi', 'SEGI_14530' => 'sgi', 'SEGI_20705' => 'sgi', 'SEGI_26088' => 'sgi', 'SEGI_28323' => 'sgi', 'SEGI_33343' => 'sgi', 'SGA_v2.0_scaffold126G33775' => 'sas', 'SGA_v2.0_scaffold2G01337' => 'sas', 'SGA_v2.0_scaffold38G15006' => 'sas', 'SGA_v2.0_scaffold39G15264' => 'sas', 'SGA_v2.0_scaffold453G51880' => 'sas', 'SHI12696' => 'shi', 'SMO367G1096' => 'smo', 'Solyc01g068630.3' => 'sly', 'Solyc05g011880.3' => 'sly', 'Solyc06g076300.3' => 'sly', 'Solyc09g010940.4' => 'sly', 'Solyc09g075890.3' => 'sly', 'Sopen01g030560' => 'spe', 'Sopen05g006630' => 'spe', 'Sopen06g032720' => 'spe', 'Sopen09g005660' => 'spe', 'Sopen09g030690' => 'spe', 'Sp4g14540' => 'spa', 'Sp4g20030' => 'spa', 'Sp5g01320' => 'spa', 'Sp6g21170' => 'spa', 'Sp6g21180' => 'spa', 'Sp6g21190' => 'spa', 'Sp6g40220' => 'spa', 'TAR362G0122' => 'tar', 'TAR362G1338' => 'tar', 'TAR369G0590' => 'tar', 'TAR371G0824' => 'tar', 'TAR622G1429' => 'tar', 'TAR623G0734' => 'tar', 'TAR625G0441' => 'tar', 'TAR629G0976' => 'tar', 'TAR633G1195' => 'tar', 'TAR636G2660' => 'tar', 'THA.LOC104799440' => 'tha', 'THA.LOC104800966' => 'tha', 'THA.LOC104806559' => 'tha', 'THA.LOC104810765' => 'tha', 'THA.LOC104816266' => 'tha', 'THA.LOC104817419' => 'tha', 'THA.LOC104827021' => 'tha', 'Thecc.01G327400' => 'tca', 'Thecc.04G229200' => 'tca', 'Thecc.05G037400' => 'tca', 'Thecc.09G318600' => 'tca', 'Thecc.09G318700' => 'tca', 'Thhalv10006238m.g' => 'esa', 'Thhalv10014321m.g' => 'esa', 'Thhalv10014335m.g' => 'esa', 'Thhalv10015826m.g' => 'esa', 'Thhalv10017107m.g' => 'esa', 'Thhalv10017180m.g' => 'esa', 'Thhalv10029339m.g' => 'esa', 'TPR.G1699' => 'tpr', 'TPR.G23609' => 'tpr', 'TPR.G3081' => 'tpr', 'TPR.G40397' => 'tpr', 'TPR.G5522' => 'tpr', 'TPR.G5618' => 'tpr', 'TPR.G5626' => 'tpr', 'TWI09G1632' => 'twi', 'TWI23G1230' => 'twi', 'TWI53G1064' => 'twi', 'TWI59G0751' => 'twi', 'TWI74G0947' => 'twi', 'TWI77G0337' => 'twi', 'TWI79G1254' => 'twi', 'unitig_0.g2341' => 'ugi', 'unitig_26.g10006' => 'ugi', 'unitig_26.g10008' => 'ugi', 'unitig_26.g9192' => 'ugi', 'vmacro14547' => 'vma', 'vmacro15333' => 'vma', 'vmacro18743' => 'vma', 'vmacro20166' => 'vma', 'VMungo0331G0523' => 'vmu', 'VMungo0331G1202' => 'vmu', 'VMungo0720G1228' => 'vmu', 'VMungo0720G1514' => 'vmu', 'VMungo1080G0169' => 'vmu', 'VMungo1127G1475' => 'vmu', 'VMungo1383G1208' => 'vmu', 'VMungo1383G1698' => 'vmu', 'Zm00001eb012270' => 'zma', 'Zm00001eb054100' => 'zma', 'Zm00001eb063350' => 'zma', 'Zm00001eb328560' => 'zma', 'Zm00001eb342820' => 'zma', 'Zm00001eb362210' => 'zma', 'Zm00001eb397730' => 'zma', 'Zm00001eb399750' => 'zma' ) $gf_id = 'HOM05D000959' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000959' ) $data_identifier = 'HOM05D000959' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 5, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 5, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 10, 'mbi' => (int) 3, 'mco' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 2, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 3, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 11, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399750' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000959', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '622', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p07100' => 'bna', 'A03p11720' => 'bna', 'A05p08300' => 'bna', 'A05p13380' => 'bna', 'A09p54130' => 'bna', 'A10p16690' => 'bna', 'A10p16700' => 'bna', 'A10p33390' => 'bna', 'Aa31LG10G16020' => 'aar', 'Aa31LG1G11810' => 'aar', 'Aa31LG1G11830' => 'aar', 'Aa31LG1G22510' => 'aar', 'Aa31LG5G4890' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5793' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2310' => 'aag', 'Actinidia08499' => 'ach', 'Actinidia11262' => 'ach', 'Actinidia23926' => 'ach', 'Actinidia34420' => 'ach', 'Actinidia36970' => 'ach', 'Ah.02g111220' => 'amhyb', 'Ah.15g097750' => 'amhyb', 'AL4G27500' => 'aly', 'AL6G11470' => 'aly', 'AL8G35950' => 'aly', 'AL8G35960' => 'aly', 'AL8G35970' => 'aly', 'Aqoxy1G00912' => 'aox', 'Aqoxy2G02253' => 'aox', 'Aqoxy2G02411' => 'aox', 'Aqoxy5G00485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BZ66YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K8ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM4FUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6BF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HFV7XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25JBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0YNNV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MAKK6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P70IT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP2Z6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V61LZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YWP64R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3S9AI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7PGHH' => 'arhy', 'AT2G32150' => 'ath', 'AT3G62040' => 'ath', 'AT5G02230' => 'ath', 'AT5G59480' => 'ath', 'AT5G59490' => 'ath', 'ATR0332G060' => 'atr', 'ATR0559G190' => 'atr', 'ATR0693G294' => 'atr', 'Atru.chr3.3975' => 'acertr', 'Atru.chr3.3976' => 'acertr', 'Atru.chr3.3977' => 'acertr', 'Atru.chr4.2498' => 'acertr', 'Atru.chr5.838' => 'acertr', 'Atru.chr8.1990' => 'acertr', 'Atru.chr8.1991' => 'acertr', 'Atru.chr8.1992' => 'acertr', 'AUR62001759' => 'cqu', 'AUR62009545' => 'cqu', 'AUR62010474' => 'cqu', 'AUR62025820' => 'cqu', 'AUR62030422' => 'cqu', 'AUR62033605' => 'cqu', 'AUR62038615' => 'cqu', 'AUR62041347' => 'cqu', 'BcaB01g04574' => 'bca', 'BcaB02g09263' => 'bca', 'BcaB02g10453' => 'bca', 'BcaB05g22513' => 'bca', 'BcaB08g36253' => 'bca', 'BcaB08g36254' => 'bca', 'BcaC01g06519' => 'bca', 'BcaC02g11889' => 'bca', 'BcaC03g14010' => 'bca', 'BcaC03g18439' => 'bca', 'BcaC04g19765' => 'bca', 'BcaC09g48432' => 'bca', 'BcaNung07302' => 'bca', 'BolC2t06040H' => 'bol', 'BolC2t07346H' => 'bol', 'BolC3t13817H' => 'bol', 'BolC4t22625H' => 'bol', 'BolC4t23297H' => 'bol', 'BolC8t51278H' => 'bol', 'BolC9t58050H' => 'bol', 'BolC9t58051H' => 'bol', 'BolC9t60163H' => 'bol', 'BraA02t04712Z' => 'bra', 'BraA02t05791Z' => 'bra', 'BraA03t10483Z' => 'bra', 'BraA05t19795Z' => 'bra', 'BraA05t20276Z' => 'bra', 'BraA09t40827Z' => 'bra', 'BraA10t43750Z' => 'bra', 'BraA10t43751Z' => 'bra', 'BraA10t45370Z' => 'bra', 'C02p00400' => 'bna', 'C02p12460' => 'bna', 'C03p13680' => 'bna', 'C04p10270' => 'bna', 'C04p17500' => 'bna', 'C08p37010' => 'bna', 'C09p51880' => 'bna', 'C09p51890' => 'bna', 'C09p74300' => 'bna', 'CAN.G179.26' => 'can', 'CAN.G3384.1' => 'can', 'CAN.G394.68' => 'can', 'CAN.G907.13' => 'can', 'CANSAT11G0012' => 'cansat', 'CANSAT25G1586' => 'cansat', 'CANSAT35G0735' => 'cansat', 'CANSAT54G0556' => 'cansat', 'CANSAT64G0356' => 'cansat', 'CANSAT78G2042' => 'cansat', 'CARHR125920' => 'chi', 'CARHR131910' => 'chi', 'CARHR172390' => 'chi', 'CARHR211140' => 'chi', 'CARHR285850' => 'chi', 'CARHR285860' => 'chi', 'Carub.0004s1347' => 'cru', 'Carub.0004s1960' => 'cru', 'Carub.0005s2880' => 'cru', 'Carub.0006s0107' => 'cru', 'Carub.0008s2015' => 'cru', 'Carub.0008s2016' => 'cru', 'Carub.0008s2017' => 'cru', 'Ca_01315_v3' => 'car', 'Ca_05063_v3' => 'car', 'Ca_10231_v3' => 'car', 'Ca_10913_v3' => 'car', 'Ca_19156_v3' => 'car', 'Ca_23644_v3' => 'car', 'Ca_26735_v3' => 'car', 'Cc01_g13130' => 'ccan', 'Cc02_g21690' => 'ccan', 'Cc03_g03600' => 'ccan', 'Cc06_g02510' => 'ccan', 'CDE02G1265' => 'cde', 'CDE05G0415' => 'cde', 'CDE08G1082' => 'cde', 'Cfa005780' => 'cfa', 'Cfa011522' => 'cfa', 'Cfa011523' => 'cfa', 'Cfa015627' => 'cfa', 'Cfa017359' => 'cfa', 'Ciclev10005687m.g' => 'ccl', 'Ciclev10012173m.g' => 'ccl', 'Ciclev10021621m.g' => 'ccl', 'Ciclev10028968m.g' => 'ccl', 'Ciclev10029907m.g' => 'ccl', 'CiPaw.01G164800' => 'cil', 'CiPaw.07G083700' => 'cil', 'CiPaw.07G127000' => 'cil', 'CiPaw.07G136900' => 'cil', 'CiPaw.08G081700' => 'cil', 'CiPaw.09G194600' => 'cil', 'CiPaw.10G146500' => 'cil', 'CiPaw.13G091500' => 'cil', 'CiPaw.13G091600' => 'cil', 'ClCG00G003390' => 'cla', 'ClCG01G007220' => 'cla', 'ClCG03G001370' => 'cla', 'ClCG04G008100' => 'cla', 'ClCG06G006110' => 'cla', 'ClCG06G006130' => 'cla', 'ClCG10G021210' => 'cla', 'COL.COLO4_07648' => 'col', 'COL.COLO4_07650' => 'col', 'COL.COLO4_07651' => 'col', 'COL.COLO4_14780' => 'col', 'COL.COLO4_18546' => 'col', 'COL.COLO4_18547' => 'col', 'COL.COLO4_23103' => 'col', 'COL.COLO4_30419' => 'col', 'COL.COLO4_34232' => 'col', 'Cpa.g.sc169.20' => 'cpa', 'Cpa.g.sc57.45' => 'cpa', 'Cpa.g.sc58.124' => 'cpa', 'Cpa.g.sc58.125' => 'cpa', 'Cpa.g.sc81.118' => 'cpa', 'Cpa.g.sc81.119' => 'cpa', 'Cre12.g524700' => 'cre', 'CsaV3_1G034430' => 'csa', 'CsaV3_1G034440' => 'csa', 'CsaV3_1G034450' => 'csa', 'CsaV3_3G034830' => 'csa', 'CsaV3_4G025090' => 'csa', 'CsaV3_5G018660' => 'csa', 'CsaV3_6G038160' => 'csa', 'CSS0003447' => 'camsi', 'CSS0017840' => 'camsi', 'CSS0019260' => 'camsi', 'CSS0040375' => 'camsi', 'CSS0042533' => 'camsi', 'DCAR_005960' => 'dca', 'DCAR_012104' => 'dca', 'DCAR_012105' => 'dca', 'DCAR_012293' => 'dca', 'DCAR_015632' => 'dca', 'DCAR_024602' => 'dca', 'DCAR_028752' => 'dca', 'Dinv06261' => 'din', 'Dinv13982' => 'din', 'Dinv17029' => 'din', 'Dinv18463' => 'din', 'Dinv33181' => 'din', 'Dinv35585' => 'din', 'Dinv37161' => 'din', 'Dinv42977' => 'din', 'Dinv43122' => 'din', 'Dinv44517' => 'din', 'Duzib093G0256' => 'dzi', 'Duzib106G1254' => 'dzi', 'Duzib128G1789' => 'dzi', 'Duzib133G0633' => 'dzi', 'Duzib138G0510' => 'dzi', 'Duzib150G1084' => 'dzi', 'Duzib168G0488' => 'dzi', 'Duzib168G1523' => 'dzi', 'Duzib170G0133' => 'dzi', 'ECA234G1433' => 'eca', 'ECA236G1432' => 'eca', 'ECA236G2256' => 'eca', 'ECA236G2365' => 'eca', 'ECA236G4830' => 'eca', 'ECA248G1505' => 'eca', 'EL10Ac3g06431' => 'bvu', 'EL10Ac5g12577' => 'bvu', 'EL10Ac6g13533' => 'bvu', 'EL10Ac7g16045' => 'bvu', 'Eucgr.A01281' => 'egr', 'Eucgr.B02326' => 'egr', 'Eucgr.H03532' => 'egr', 'Eucgr.K00553' => 'egr', 'Eucgr.K03116' => 'egr', 'FAN02G3963' => 'fan', 'FAN05G0438' => 'fan', 'FAN09G2434' => 'fan', 'FAN12G3984' => 'fan', 'FAN14G0798' => 'fan', 'FAN17G0652' => 'fan', 'FAN19G1988' => 'fan', 'FAN22G0632' => 'fan', 'FAN23G0387' => 'fan', 'FAN26G1323' => 'fan', 'FAN28G0666' => 'fan', 'FvH4_1g26080' => 'fve', 'FvH4_3g36780' => 'fve', 'FvH4_4g15270' => 'fve', 'FvH4_6g13490' => 'fve', 'Glyma.01G098700' => 'gma', 'Glyma.03G065900' => 'gma', 'Glyma.03G073754' => 'gma', 'Glyma.03G073758' => 'gma', 'Glyma.03G083200' => 'gma', 'Glyma.03G225500' => 'gma', 'Glyma.05G037766' => 'gma', 'Glyma.07G133500' => 'gma', 'Glyma.10G139400' => 'gma', 'Glyma.10G248900' => 'gma', 'Glyma.11G137800' => 'gma', 'Glyma.12G061300' => 'gma', 'Glyma.13G337900' => 'gma', 'Glyma.15G036600' => 'gma', 'Glyma.18G182800' => 'gma', 'Glyma.19G222500' => 'gma', 'Glyma.20G144800' => 'gma', 'Gohir.A01G222000' => 'ghi', 'Gohir.A03G044000' => 'ghi', 'Gohir.A03G044100' => 'ghi', 'Gohir.A04G083100' => 'ghi', 'Gohir.A07G127200' => 'ghi', 'Gohir.A07G132400' => 'ghi', 'Gohir.A08G000700' => 'ghi', 'Gohir.A11G327300' => 'ghi', 'Gohir.D01G211500' => 'ghi', 'Gohir.D03G123400' => 'ghi', 'Gohir.D03G123500' => 'ghi', 'Gohir.D04G121800' => 'ghi', 'Gohir.D07G131500' => 'ghi', 'Gohir.D07G136600' => 'ghi', 'Gohir.D08G011600' => 'ghi', 'Gohir.D11G346200' => 'ghi', 'Gorai.001G142800' => 'gra', 'Gorai.001G148700' => 'gra', 'Gorai.002G257300' => 'gra', 'Gorai.003G130000' => 'gra', 'Gorai.003G130100' => 'gra', 'Gorai.004G005300' => 'gra', 'Gorai.007G376500' => 'gra', 'Gorai.012G104700' => 'gra', 'GSVIVG01017946001' => 'vvi', 'GSVIVG01024928001' => 'vvi', 'GSVIVG01028227001' => 'vvi', 'GSVIVG01034151001' => 'vvi', 'HanXRQChr05g0135031' => 'han', 'HanXRQChr05g0135041' => 'han', 'HanXRQChr05g0140021' => 'han', 'HanXRQChr06g0178981' => 'han', 'HanXRQChr07g0188251' => 'han', 'HanXRQChr08g0235311' => 'han', 'HanXRQChr09g0271011' => 'han', 'HanXRQChr10g0293321' => 'han', 'HanXRQChr13g0388171' => 'han', 'Haze_00916' => 'cav', 'Haze_05063' => 'cav', 'Haze_20814' => 'cav', 'Haze_24128' => 'cav', 'Hma1.2p1_0745F.1_g212010' => 'hma', 'Hma1.2p1_0757F.1_g213260' => 'hma', 'Hma1.2p1_0936F.1_g238840' => 'hma', 'Hma1.2p1_1735F.1_g299890' => 'hma', 'Hma1.2p1_1861F.1_g305685' => 'hma', 'HPP92_003397' => 'vpl', 'HPP92_012597' => 'vpl', 'HPP92_015520' => 'vpl', 'HPP92_015539' => 'vpl', 'HPP92_020373' => 'vpl', 'Hund04938' => 'sun', 'Hund10677' => 'sun', 'Hund11033' => 'sun', 'Hund12155' => 'sun', 'Lalb_Chr01g0022551' => 'lal', 'Lalb_Chr03g0042341' => 'lal', 'Lalb_Chr07g0192931' => 'lal', 'Lalb_Chr12g0209551' => 'lal', 'Lalb_Chr19g0125251' => 'lal', 'Lalb_Chr19g0137891' => 'lal', 'Lalb_Chr21g0304641' => 'lal', 'Lalb_Chr21g0309881' => 'lal', 'Lj1A5T12' => 'lonja', 'Lj1C148G10' => 'lonja', 'Lj2A93T83' => 'lonja', 'Lj3A738G68' => 'lonja', 'Lj3C966T1' => 'lonja', 'Lj3g0018958' => 'lja', 'Lj3g0021831' => 'lja', 'Lj3g0025443' => 'lja', 'Lj4g0026809' => 'lja', 'Lj5g0012558' => 'lja', 'Lj5g0021586' => 'lja', 'Lsat_1_v5_gn_5_156840' => 'lsa', 'Lsat_1_v5_gn_8_73460' => 'lsa', 'Lsat_1_v5_gn_8_73481' => 'lsa', 'Lsat_1_v5_gn_9_31601' => 'lsa', 'Lsat_1_v5_gn_9_77320' => 'lsa', 'Manes.01G171300' => 'mes', 'Manes.01G171400' => 'mes', 'Manes.01G236100' => 'mes', 'Manes.02G130500' => 'mes', 'Manes.02G130600' => 'mes', 'Manes.03G180200' => 'mes', 'Manes.05G007000' => 'mes', 'Manes.08G084400' => 'mes', 'Manes.09G092600' => 'mes', 'Manes.15G027900' => 'mes', 'MBI04_g40948_MAGBIO' => 'mbi', 'MBI14_g12123_MAGBIO' => 'mbi', 'MBI18_g28915_MAGBIO' => 'mbi', 'MCO09G053' => 'mco', 'MCO11G782' => 'mco', 'MCO15G215' => 'mco', 'MD03G1088500' => 'mdo', 'MD03G1088600' => 'mdo', 'MD04G1130800' => 'mdo', 'MD09G1291700' => 'mdo', 'MD11G1097500' => 'mdo', 'MD11G1097600' => 'mdo', 'MD12G1143900' => 'mdo', 'MD13G1191400' => 'mdo', 'MD16G1191500' => 'mdo', 'Medtr1g085570' => 'mtr', 'Medtr1g104610' => 'mtr', 'Medtr2g097520' => 'mtr', 'Medtr4g021800' => 'mtr', 'Medtr4g021825' => 'mtr', 'Medtr4g064270' => 'mtr', 'Medtr4g064380' => 'mtr', 'Medtr7g062150' => 'mtr', 'MELO3C003138.2' => 'cme', 'MELO3C005187.2' => 'cme', 'MELO3C009252.2' => 'cme', 'MELO3C014481.2' => 'cme', 'MELO3C020616.2' => 'cme', 'MELO3C020617.2' => 'cme', 'MELO3C020618.2' => 'cme', 'Migut.G00328' => 'egut', 'Migut.J00320' => 'egut', 'Migut.L01000' => 'egut', 'Migut.L01953' => 'egut', 'MSTRG.10253' => 'ama', 'MSTRG.19077' => 'ama', 'MSTRG.26780' => 'ama', 'MSTRG.4023' => 'ama', 'MSTRG.5655' => 'ama', 'MSTRG.9992' => 'ama', 'Nitab4.5_0000043g0310' => 'nta', 'Nitab4.5_0000463g0080' => 'nta', 'Nitab4.5_0000705g0170' => 'nta', 'Nitab4.5_0001326g0060' => 'nta', 'Nitab4.5_0001628g0030' => 'nta', 'Nitab4.5_0002103g0110' => 'nta', 'Nitab4.5_0002946g0030' => 'nta', 'Nitab4.5_0004639g0030' => 'nta', 'Nn2g11149' => 'nnu', 'Nn2g13389' => 'nnu', 'Nn4g25326' => 'nnu', 'Nn4g26290' => 'nnu', 'Nn5g29865' => 'nnu', 'Oeu004163.1' => 'oeu', 'Oeu006901.1' => 'oeu', 'Oeu010096.1' => 'oeu', 'Oeu024340.1' => 'oeu', 'Oeu048369.1' => 'oeu', 'Os01g0973000' => 'osa', 'Os03g0273800' => 'osa', 'Os03g0701200' => 'osa', 'Os03g0834050' => 'osa', 'Os07g0634400' => 'osa', 'Peaxi162Scf00092g01414' => 'pax', 'Peaxi162Scf00165g00818' => 'pax', 'Peaxi162Scf00309g00516' => 'pax', 'Peaxi162Scf00774g00218' => 'pax', 'PGR004G1824' => 'pgr', 'PGR004G2606' => 'pgr', 'PGR031G2716' => 'pgr', 'PGR102G2460' => 'pgr', 'PGR142G2599' => 'pgr', 'PGSC0003DMG400000843' => 'stu', 'PGSC0003DMG400008829' => 'stu', 'PGSC0003DMG400030418' => 'stu', 'PGSC0003DMG400031834' => 'stu', 'PGSC0003DMG401028300' => 'stu', 'PGSC0003DMG402028300' => 'stu', 'Phvul.001G219300' => 'pvu', 'Phvul.007G056000' => 'pvu', 'Phvul.007G208000' => 'pvu', 'Phvul.008G119500' => 'pvu', 'Phvul.010G011200' => 'pvu', 'Phvul.010G014800' => 'pvu', 'Phvul.011G062900' => 'pvu', 'Phvul.L007043' => 'pvu', 'Potri.001G242300' => 'ptr', 'Potri.002G185300' => 'ptr', 'Potri.006G086900' => 'ptr', 'Potri.008G151700' => 'ptr', 'Potri.009G033500' => 'ptr', 'Potri.010G089300' => 'ptr', 'Potri.014G110800' => 'ptr', 'Pp3c27_8130' => 'ppa', 'Pp3c6_27410' => 'ppa', 'PRCOL_00001659' => 'pco', 'PRCOL_00001927' => 'pco', 'PRCOL_00003649' => 'pco', 'Prupe.1G011600' => 'ppe', 'Prupe.3G000800' => 'ppe', 'Prupe.3G001100' => 'ppe', 'Prupe.6G072700' => 'ppe', 'Prupe.6G072800' => 'ppe', 'Prupe.6G257300' => 'ppe', 'Prupe.8G033000' => 'ppe', 'Psat0s2633g0080' => 'psa', 'Psat0s3396g0080' => 'psa', 'Psat0s3396g0200' => 'psa', 'Psat3g139080' => 'psa', 'Psat5g285080' => 'psa', 'Psat6g157760' => 'psa', 'Psat6g208440' => 'psa', 'Psat7g215320' => 'psa', 'Psat7g215400' => 'psa', 'Psat7g235600' => 'psa', 'Psat7g235760' => 'psa', 'PSO063G4603' => 'pso', 'PSO210G0182' => 'pso', 'PSO210G0196' => 'pso', 'PSO339G0394' => 'pso', 'PSO339G4127' => 'pso', 'PSO513G0064' => 'pso', 'PSO761G0079' => 'pso', 'QL01p031003' => 'qlo', 'QL01p031078' => 'qlo', 'QL06p003004' => 'qlo', 'QL07p048731' => 'qlo', 'QL09p037427' => 'qlo', 'RcHm_v2.0_Chr3g0466361' => 'rch', 'RcHm_v2.0_Chr3g0485571' => 'rch', 'RcHm_v2.0_Chr4g0416551' => 'rch', 'RcHm_v2.0_Chr5g0065831' => 'rch', 'Rhsim01G0230500' => 'rsi', 'Rhsim05G0194000' => 'rsi', 'Rhsim08G0250400' => 'rsi', 'Sabra02G0131000' => 'sbr', 'Sabra06G0066300' => 'sbr', 'Sabra08G0115500' => 'sbr', 'Sabra09G0023900' => 'sbr', 'Sabra10G0054000' => 'sbr', 'Sabra14G0081500' => 'sbr', 'Sabra16G0147100' => 'sbr', 'SalBow2G2957' => 'sbo', 'SalBow4G3320' => 'sbo', 'SalBow8G1894' => 'sbo', 'Sc07g0007950' => 'sci', 'Sc12g0001360' => 'sci', 'Sc13g0004330' => 'sci', 'Sc20g0005010' => 'sci', 'Sed0000361' => 'sed', 'Sed0001706' => 'sed', 'Sed0002422' => 'sed', 'Sed0004029' => 'sed', 'Sed0004602' => 'sed', 'Sed0004943' => 'sed', 'Sed0008646' => 'sed', 'Sed0023313' => 'sed', 'Sed0024843' => 'sed', 'SEGI_00081' => 'sgi', 'SEGI_00947' => 'sgi', 'SEGI_04046' => 'sgi', 'SEGI_06880' => 'sgi', 'SEGI_09736' => 'sgi', 'SEGI_12741' => 'sgi', 'SEGI_14530' => 'sgi', 'SEGI_20705' => 'sgi', 'SEGI_26088' => 'sgi', 'SEGI_28323' => 'sgi', 'SEGI_33343' => 'sgi', 'SGA_v2.0_scaffold126G33775' => 'sas', 'SGA_v2.0_scaffold2G01337' => 'sas', 'SGA_v2.0_scaffold38G15006' => 'sas', 'SGA_v2.0_scaffold39G15264' => 'sas', 'SGA_v2.0_scaffold453G51880' => 'sas', 'SHI12696' => 'shi', 'SMO367G1096' => 'smo', 'Solyc01g068630.3' => 'sly', 'Solyc05g011880.3' => 'sly', 'Solyc06g076300.3' => 'sly', 'Solyc09g010940.4' => 'sly', 'Solyc09g075890.3' => 'sly', 'Sopen01g030560' => 'spe', 'Sopen05g006630' => 'spe', 'Sopen06g032720' => 'spe', 'Sopen09g005660' => 'spe', 'Sopen09g030690' => 'spe', 'Sp4g14540' => 'spa', 'Sp4g20030' => 'spa', 'Sp5g01320' => 'spa', 'Sp6g21170' => 'spa', 'Sp6g21180' => 'spa', 'Sp6g21190' => 'spa', 'Sp6g40220' => 'spa', 'TAR362G0122' => 'tar', 'TAR362G1338' => 'tar', 'TAR369G0590' => 'tar', 'TAR371G0824' => 'tar', 'TAR622G1429' => 'tar', 'TAR623G0734' => 'tar', 'TAR625G0441' => 'tar', 'TAR629G0976' => 'tar', 'TAR633G1195' => 'tar', 'TAR636G2660' => 'tar', 'THA.LOC104799440' => 'tha', 'THA.LOC104800966' => 'tha', 'THA.LOC104806559' => 'tha', 'THA.LOC104810765' => 'tha', 'THA.LOC104816266' => 'tha', 'THA.LOC104817419' => 'tha', 'THA.LOC104827021' => 'tha', 'Thecc.01G327400' => 'tca', 'Thecc.04G229200' => 'tca', 'Thecc.05G037400' => 'tca', 'Thecc.09G318600' => 'tca', 'Thecc.09G318700' => 'tca', 'Thhalv10006238m.g' => 'esa', 'Thhalv10014321m.g' => 'esa', 'Thhalv10014335m.g' => 'esa', 'Thhalv10015826m.g' => 'esa', 'Thhalv10017107m.g' => 'esa', 'Thhalv10017180m.g' => 'esa', 'Thhalv10029339m.g' => 'esa', 'TPR.G1699' => 'tpr', 'TPR.G23609' => 'tpr', 'TPR.G3081' => 'tpr', 'TPR.G40397' => 'tpr', 'TPR.G5522' => 'tpr', 'TPR.G5618' => 'tpr', 'TPR.G5626' => 'tpr', 'TWI09G1632' => 'twi', 'TWI23G1230' => 'twi', 'TWI53G1064' => 'twi', 'TWI59G0751' => 'twi', 'TWI74G0947' => 'twi', 'TWI77G0337' => 'twi', 'TWI79G1254' => 'twi', 'unitig_0.g2341' => 'ugi', 'unitig_26.g10006' => 'ugi', 'unitig_26.g10008' => 'ugi', 'unitig_26.g9192' => 'ugi', 'vmacro14547' => 'vma', 'vmacro15333' => 'vma', 'vmacro18743' => 'vma', 'vmacro20166' => 'vma', 'VMungo0331G0523' => 'vmu', 'VMungo0331G1202' => 'vmu', 'VMungo0720G1228' => 'vmu', 'VMungo0720G1514' => 'vmu', 'VMungo1080G0169' => 'vmu', 'VMungo1127G1475' => 'vmu', 'VMungo1383G1208' => 'vmu', 'VMungo1383G1698' => 'vmu', 'Zm00001eb012270' => 'zma', 'Zm00001eb054100' => 'zma', 'Zm00001eb063350' => 'zma', 'Zm00001eb328560' => 'zma', 'Zm00001eb342820' => 'zma', 'Zm00001eb362210' => 'zma', 'Zm00001eb397730' => 'zma', 'Zm00001eb399750' => 'zma' ), 'gf_id' => 'HOM05D000959', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000959' ), 'data_identifier' => 'HOM05D000959', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000959', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '622', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p07100' => 'bna', 'A03p11720' => 'bna', 'A05p08300' => 'bna', 'A05p13380' => 'bna', 'A09p54130' => 'bna', 'A10p16690' => 'bna', 'A10p16700' => 'bna', 'A10p33390' => 'bna', 'Aa31LG10G16020' => 'aar', 'Aa31LG1G11810' => 'aar', 'Aa31LG1G11830' => 'aar', 'Aa31LG1G22510' => 'aar', 'Aa31LG5G4890' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5793' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2310' => 'aag', 'Actinidia08499' => 'ach', 'Actinidia11262' => 'ach', 'Actinidia23926' => 'ach', 'Actinidia34420' => 'ach', 'Actinidia36970' => 'ach', 'Ah.02g111220' => 'amhyb', 'Ah.15g097750' => 'amhyb', 'AL4G27500' => 'aly', 'AL6G11470' => 'aly', 'AL8G35950' => 'aly', 'AL8G35960' => 'aly', 'AL8G35970' => 'aly', 'Aqoxy1G00912' => 'aox', 'Aqoxy2G02253' => 'aox', 'Aqoxy2G02411' => 'aox', 'Aqoxy5G00485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BZ66YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K8ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM4FUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6BF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HFV7XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25JBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0YNNV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MAKK6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P70IT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP2Z6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V61LZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YWP64R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3S9AI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7PGHH' => 'arhy', 'AT2G32150' => 'ath', 'AT3G62040' => 'ath', 'AT5G02230' => 'ath', 'AT5G59480' => 'ath', 'AT5G59490' => 'ath', 'ATR0332G060' => 'atr', 'ATR0559G190' => 'atr', 'ATR0693G294' => 'atr', 'Atru.chr3.3975' => 'acertr', 'Atru.chr3.3976' => 'acertr', 'Atru.chr3.3977' => 'acertr', 'Atru.chr4.2498' => 'acertr', 'Atru.chr5.838' => 'acertr', 'Atru.chr8.1990' => 'acertr', 'Atru.chr8.1991' => 'acertr', 'Atru.chr8.1992' => 'acertr', 'AUR62001759' => 'cqu', 'AUR62009545' => 'cqu', 'AUR62010474' => 'cqu', 'AUR62025820' => 'cqu', 'AUR62030422' => 'cqu', 'AUR62033605' => 'cqu', 'AUR62038615' => 'cqu', 'AUR62041347' => 'cqu', 'BcaB01g04574' => 'bca', 'BcaB02g09263' => 'bca', 'BcaB02g10453' => 'bca', 'BcaB05g22513' => 'bca', 'BcaB08g36253' => 'bca', 'BcaB08g36254' => 'bca', 'BcaC01g06519' => 'bca', 'BcaC02g11889' => 'bca', 'BcaC03g14010' => 'bca', 'BcaC03g18439' => 'bca', 'BcaC04g19765' => 'bca', 'BcaC09g48432' => 'bca', 'BcaNung07302' => 'bca', 'BolC2t06040H' => 'bol', 'BolC2t07346H' => 'bol', 'BolC3t13817H' => 'bol', 'BolC4t22625H' => 'bol', 'BolC4t23297H' => 'bol', 'BolC8t51278H' => 'bol', 'BolC9t58050H' => 'bol', 'BolC9t58051H' => 'bol', 'BolC9t60163H' => 'bol', 'BraA02t04712Z' => 'bra', 'BraA02t05791Z' => 'bra', 'BraA03t10483Z' => 'bra', 'BraA05t19795Z' => 'bra', 'BraA05t20276Z' => 'bra', 'BraA09t40827Z' => 'bra', 'BraA10t43750Z' => 'bra', 'BraA10t43751Z' => 'bra', 'BraA10t45370Z' => 'bra', 'C02p00400' => 'bna', 'C02p12460' => 'bna', 'C03p13680' => 'bna', 'C04p10270' => 'bna', 'C04p17500' => 'bna', 'C08p37010' => 'bna', 'C09p51880' => 'bna', 'C09p51890' => 'bna', 'C09p74300' => 'bna', 'CAN.G179.26' => 'can', 'CAN.G3384.1' => 'can', 'CAN.G394.68' => 'can', 'CAN.G907.13' => 'can', 'CANSAT11G0012' => 'cansat', 'CANSAT25G1586' => 'cansat', 'CANSAT35G0735' => 'cansat', 'CANSAT54G0556' => 'cansat', 'CANSAT64G0356' => 'cansat', 'CANSAT78G2042' => 'cansat', 'CARHR125920' => 'chi', 'CARHR131910' => 'chi', 'CARHR172390' => 'chi', 'CARHR211140' => 'chi', 'CARHR285850' => 'chi', 'CARHR285860' => 'chi', 'Carub.0004s1347' => 'cru', 'Carub.0004s1960' => 'cru', 'Carub.0005s2880' => 'cru', 'Carub.0006s0107' => 'cru', 'Carub.0008s2015' => 'cru', 'Carub.0008s2016' => 'cru', 'Carub.0008s2017' => 'cru', 'Ca_01315_v3' => 'car', 'Ca_05063_v3' => 'car', 'Ca_10231_v3' => 'car', 'Ca_10913_v3' => 'car', 'Ca_19156_v3' => 'car', 'Ca_23644_v3' => 'car', 'Ca_26735_v3' => 'car', 'Cc01_g13130' => 'ccan', 'Cc02_g21690' => 'ccan', 'Cc03_g03600' => 'ccan', 'Cc06_g02510' => 'ccan', 'CDE02G1265' => 'cde', 'CDE05G0415' => 'cde', 'CDE08G1082' => 'cde', 'Cfa005780' => 'cfa', 'Cfa011522' => 'cfa', 'Cfa011523' => 'cfa', 'Cfa015627' => 'cfa', 'Cfa017359' => 'cfa', 'Ciclev10005687m.g' => 'ccl', 'Ciclev10012173m.g' => 'ccl', 'Ciclev10021621m.g' => 'ccl', 'Ciclev10028968m.g' => 'ccl', 'Ciclev10029907m.g' => 'ccl', 'CiPaw.01G164800' => 'cil', 'CiPaw.07G083700' => 'cil', 'CiPaw.07G127000' => 'cil', 'CiPaw.07G136900' => 'cil', 'CiPaw.08G081700' => 'cil', 'CiPaw.09G194600' => 'cil', 'CiPaw.10G146500' => 'cil', 'CiPaw.13G091500' => 'cil', 'CiPaw.13G091600' => 'cil', 'ClCG00G003390' => 'cla', 'ClCG01G007220' => 'cla', 'ClCG03G001370' => 'cla', 'ClCG04G008100' => 'cla', 'ClCG06G006110' => 'cla', 'ClCG06G006130' => 'cla', 'ClCG10G021210' => 'cla', 'COL.COLO4_07648' => 'col', 'COL.COLO4_07650' => 'col', 'COL.COLO4_07651' => 'col', 'COL.COLO4_14780' => 'col', 'COL.COLO4_18546' => 'col', 'COL.COLO4_18547' => 'col', 'COL.COLO4_23103' => 'col', 'COL.COLO4_30419' => 'col', 'COL.COLO4_34232' => 'col', 'Cpa.g.sc169.20' => 'cpa', 'Cpa.g.sc57.45' => 'cpa', 'Cpa.g.sc58.124' => 'cpa', 'Cpa.g.sc58.125' => 'cpa', 'Cpa.g.sc81.118' => 'cpa', 'Cpa.g.sc81.119' => 'cpa', 'Cre12.g524700' => 'cre', 'CsaV3_1G034430' => 'csa', 'CsaV3_1G034440' => 'csa', 'CsaV3_1G034450' => 'csa', 'CsaV3_3G034830' => 'csa', 'CsaV3_4G025090' => 'csa', 'CsaV3_5G018660' => 'csa', 'CsaV3_6G038160' => 'csa', 'CSS0003447' => 'camsi', 'CSS0017840' => 'camsi', 'CSS0019260' => 'camsi', 'CSS0040375' => 'camsi', 'CSS0042533' => 'camsi', 'DCAR_005960' => 'dca', 'DCAR_012104' => 'dca', 'DCAR_012105' => 'dca', 'DCAR_012293' => 'dca', 'DCAR_015632' => 'dca', 'DCAR_024602' => 'dca', 'DCAR_028752' => 'dca', 'Dinv06261' => 'din', 'Dinv13982' => 'din', 'Dinv17029' => 'din', 'Dinv18463' => 'din', 'Dinv33181' => 'din', 'Dinv35585' => 'din', 'Dinv37161' => 'din', 'Dinv42977' => 'din', 'Dinv43122' => 'din', 'Dinv44517' => 'din', 'Duzib093G0256' => 'dzi', 'Duzib106G1254' => 'dzi', 'Duzib128G1789' => 'dzi', 'Duzib133G0633' => 'dzi', 'Duzib138G0510' => 'dzi', 'Duzib150G1084' => 'dzi', 'Duzib168G0488' => 'dzi', 'Duzib168G1523' => 'dzi', 'Duzib170G0133' => 'dzi', 'ECA234G1433' => 'eca', 'ECA236G1432' => 'eca', 'ECA236G2256' => 'eca', 'ECA236G2365' => 'eca', 'ECA236G4830' => 'eca', 'ECA248G1505' => 'eca', 'EL10Ac3g06431' => 'bvu', 'EL10Ac5g12577' => 'bvu', 'EL10Ac6g13533' => 'bvu', 'EL10Ac7g16045' => 'bvu', 'Eucgr.A01281' => 'egr', 'Eucgr.B02326' => 'egr', 'Eucgr.H03532' => 'egr', 'Eucgr.K00553' => 'egr', 'Eucgr.K03116' => 'egr', 'FAN02G3963' => 'fan', 'FAN05G0438' => 'fan', 'FAN09G2434' => 'fan', 'FAN12G3984' => 'fan', 'FAN14G0798' => 'fan', 'FAN17G0652' => 'fan', 'FAN19G1988' => 'fan', 'FAN22G0632' => 'fan', 'FAN23G0387' => 'fan', 'FAN26G1323' => 'fan', 'FAN28G0666' => 'fan', 'FvH4_1g26080' => 'fve', 'FvH4_3g36780' => 'fve', 'FvH4_4g15270' => 'fve', 'FvH4_6g13490' => 'fve', 'Glyma.01G098700' => 'gma', 'Glyma.03G065900' => 'gma', 'Glyma.03G073754' => 'gma', 'Glyma.03G073758' => 'gma', 'Glyma.03G083200' => 'gma', 'Glyma.03G225500' => 'gma', 'Glyma.05G037766' => 'gma', 'Glyma.07G133500' => 'gma', 'Glyma.10G139400' => 'gma', 'Glyma.10G248900' => 'gma', 'Glyma.11G137800' => 'gma', 'Glyma.12G061300' => 'gma', 'Glyma.13G337900' => 'gma', 'Glyma.15G036600' => 'gma', 'Glyma.18G182800' => 'gma', 'Glyma.19G222500' => 'gma', 'Glyma.20G144800' => 'gma', 'Gohir.A01G222000' => 'ghi', 'Gohir.A03G044000' => 'ghi', 'Gohir.A03G044100' => 'ghi', 'Gohir.A04G083100' => 'ghi', 'Gohir.A07G127200' => 'ghi', 'Gohir.A07G132400' => 'ghi', 'Gohir.A08G000700' => 'ghi', 'Gohir.A11G327300' => 'ghi', 'Gohir.D01G211500' => 'ghi', 'Gohir.D03G123400' => 'ghi', 'Gohir.D03G123500' => 'ghi', 'Gohir.D04G121800' => 'ghi', 'Gohir.D07G131500' => 'ghi', 'Gohir.D07G136600' => 'ghi', 'Gohir.D08G011600' => 'ghi', 'Gohir.D11G346200' => 'ghi', 'Gorai.001G142800' => 'gra', 'Gorai.001G148700' => 'gra', 'Gorai.002G257300' => 'gra', 'Gorai.003G130000' => 'gra', 'Gorai.003G130100' => 'gra', 'Gorai.004G005300' => 'gra', 'Gorai.007G376500' => 'gra', 'Gorai.012G104700' => 'gra', 'GSVIVG01017946001' => 'vvi', 'GSVIVG01024928001' => 'vvi', 'GSVIVG01028227001' => 'vvi', 'GSVIVG01034151001' => 'vvi', 'HanXRQChr05g0135031' => 'han', 'HanXRQChr05g0135041' => 'han', 'HanXRQChr05g0140021' => 'han', 'HanXRQChr06g0178981' => 'han', 'HanXRQChr07g0188251' => 'han', 'HanXRQChr08g0235311' => 'han', 'HanXRQChr09g0271011' => 'han', 'HanXRQChr10g0293321' => 'han', 'HanXRQChr13g0388171' => 'han', 'Haze_00916' => 'cav', 'Haze_05063' => 'cav', 'Haze_20814' => 'cav', 'Haze_24128' => 'cav', 'Hma1.2p1_0745F.1_g212010' => 'hma', 'Hma1.2p1_0757F.1_g213260' => 'hma', 'Hma1.2p1_0936F.1_g238840' => 'hma', 'Hma1.2p1_1735F.1_g299890' => 'hma', 'Hma1.2p1_1861F.1_g305685' => 'hma', 'HPP92_003397' => 'vpl', 'HPP92_012597' => 'vpl', 'HPP92_015520' => 'vpl', 'HPP92_015539' => 'vpl', 'HPP92_020373' => 'vpl', 'Hund04938' => 'sun', 'Hund10677' => 'sun', 'Hund11033' => 'sun', 'Hund12155' => 'sun', 'Lalb_Chr01g0022551' => 'lal', 'Lalb_Chr03g0042341' => 'lal', 'Lalb_Chr07g0192931' => 'lal', 'Lalb_Chr12g0209551' => 'lal', 'Lalb_Chr19g0125251' => 'lal', 'Lalb_Chr19g0137891' => 'lal', 'Lalb_Chr21g0304641' => 'lal', 'Lalb_Chr21g0309881' => 'lal', 'Lj1A5T12' => 'lonja', 'Lj1C148G10' => 'lonja', 'Lj2A93T83' => 'lonja', 'Lj3A738G68' => 'lonja', 'Lj3C966T1' => 'lonja', 'Lj3g0018958' => 'lja', 'Lj3g0021831' => 'lja', 'Lj3g0025443' => 'lja', 'Lj4g0026809' => 'lja', 'Lj5g0012558' => 'lja', 'Lj5g0021586' => 'lja', 'Lsat_1_v5_gn_5_156840' => 'lsa', 'Lsat_1_v5_gn_8_73460' => 'lsa', 'Lsat_1_v5_gn_8_73481' => 'lsa', 'Lsat_1_v5_gn_9_31601' => 'lsa', 'Lsat_1_v5_gn_9_77320' => 'lsa', 'Manes.01G171300' => 'mes', 'Manes.01G171400' => 'mes', 'Manes.01G236100' => 'mes', 'Manes.02G130500' => 'mes', 'Manes.02G130600' => 'mes', 'Manes.03G180200' => 'mes', 'Manes.05G007000' => 'mes', 'Manes.08G084400' => 'mes', 'Manes.09G092600' => 'mes', 'Manes.15G027900' => 'mes', 'MBI04_g40948_MAGBIO' => 'mbi', 'MBI14_g12123_MAGBIO' => 'mbi', 'MBI18_g28915_MAGBIO' => 'mbi', 'MCO09G053' => 'mco', 'MCO11G782' => 'mco', 'MCO15G215' => 'mco', 'MD03G1088500' => 'mdo', 'MD03G1088600' => 'mdo', 'MD04G1130800' => 'mdo', 'MD09G1291700' => 'mdo', 'MD11G1097500' => 'mdo', 'MD11G1097600' => 'mdo', 'MD12G1143900' => 'mdo', 'MD13G1191400' => 'mdo', 'MD16G1191500' => 'mdo', 'Medtr1g085570' => 'mtr', 'Medtr1g104610' => 'mtr', 'Medtr2g097520' => 'mtr', 'Medtr4g021800' => 'mtr', 'Medtr4g021825' => 'mtr', 'Medtr4g064270' => 'mtr', 'Medtr4g064380' => 'mtr', 'Medtr7g062150' => 'mtr', 'MELO3C003138.2' => 'cme', 'MELO3C005187.2' => 'cme', 'MELO3C009252.2' => 'cme', 'MELO3C014481.2' => 'cme', 'MELO3C020616.2' => 'cme', 'MELO3C020617.2' => 'cme', 'MELO3C020618.2' => 'cme', 'Migut.G00328' => 'egut', 'Migut.J00320' => 'egut', 'Migut.L01000' => 'egut', 'Migut.L01953' => 'egut', 'MSTRG.10253' => 'ama', 'MSTRG.19077' => 'ama', 'MSTRG.26780' => 'ama', 'MSTRG.4023' => 'ama', 'MSTRG.5655' => 'ama', 'MSTRG.9992' => 'ama', 'Nitab4.5_0000043g0310' => 'nta', 'Nitab4.5_0000463g0080' => 'nta', 'Nitab4.5_0000705g0170' => 'nta', 'Nitab4.5_0001326g0060' => 'nta', 'Nitab4.5_0001628g0030' => 'nta', 'Nitab4.5_0002103g0110' => 'nta', 'Nitab4.5_0002946g0030' => 'nta', 'Nitab4.5_0004639g0030' => 'nta', 'Nn2g11149' => 'nnu', 'Nn2g13389' => 'nnu', 'Nn4g25326' => 'nnu', 'Nn4g26290' => 'nnu', 'Nn5g29865' => 'nnu', 'Oeu004163.1' => 'oeu', 'Oeu006901.1' => 'oeu', 'Oeu010096.1' => 'oeu', 'Oeu024340.1' => 'oeu', 'Oeu048369.1' => 'oeu', 'Os01g0973000' => 'osa', 'Os03g0273800' => 'osa', 'Os03g0701200' => 'osa', 'Os03g0834050' => 'osa', 'Os07g0634400' => 'osa', 'Peaxi162Scf00092g01414' => 'pax', 'Peaxi162Scf00165g00818' => 'pax', 'Peaxi162Scf00309g00516' => 'pax', 'Peaxi162Scf00774g00218' => 'pax', 'PGR004G1824' => 'pgr', 'PGR004G2606' => 'pgr', 'PGR031G2716' => 'pgr', 'PGR102G2460' => 'pgr', 'PGR142G2599' => 'pgr', 'PGSC0003DMG400000843' => 'stu', 'PGSC0003DMG400008829' => 'stu', 'PGSC0003DMG400030418' => 'stu', 'PGSC0003DMG400031834' => 'stu', 'PGSC0003DMG401028300' => 'stu', 'PGSC0003DMG402028300' => 'stu', 'Phvul.001G219300' => 'pvu', 'Phvul.007G056000' => 'pvu', 'Phvul.007G208000' => 'pvu', 'Phvul.008G119500' => 'pvu', 'Phvul.010G011200' => 'pvu', 'Phvul.010G014800' => 'pvu', 'Phvul.011G062900' => 'pvu', 'Phvul.L007043' => 'pvu', 'Potri.001G242300' => 'ptr', 'Potri.002G185300' => 'ptr', 'Potri.006G086900' => 'ptr', 'Potri.008G151700' => 'ptr', 'Potri.009G033500' => 'ptr', 'Potri.010G089300' => 'ptr', 'Potri.014G110800' => 'ptr', 'Pp3c27_8130' => 'ppa', 'Pp3c6_27410' => 'ppa', 'PRCOL_00001659' => 'pco', 'PRCOL_00001927' => 'pco', 'PRCOL_00003649' => 'pco', 'Prupe.1G011600' => 'ppe', 'Prupe.3G000800' => 'ppe', 'Prupe.3G001100' => 'ppe', 'Prupe.6G072700' => 'ppe', 'Prupe.6G072800' => 'ppe', 'Prupe.6G257300' => 'ppe', 'Prupe.8G033000' => 'ppe', 'Psat0s2633g0080' => 'psa', 'Psat0s3396g0080' => 'psa', 'Psat0s3396g0200' => 'psa', 'Psat3g139080' => 'psa', 'Psat5g285080' => 'psa', 'Psat6g157760' => 'psa', 'Psat6g208440' => 'psa', 'Psat7g215320' => 'psa', 'Psat7g215400' => 'psa', 'Psat7g235600' => 'psa', 'Psat7g235760' => 'psa', 'PSO063G4603' => 'pso', 'PSO210G0182' => 'pso', 'PSO210G0196' => 'pso', 'PSO339G0394' => 'pso', 'PSO339G4127' => 'pso', 'PSO513G0064' => 'pso', 'PSO761G0079' => 'pso', 'QL01p031003' => 'qlo', 'QL01p031078' => 'qlo', 'QL06p003004' => 'qlo', 'QL07p048731' => 'qlo', 'QL09p037427' => 'qlo', 'RcHm_v2.0_Chr3g0466361' => 'rch', 'RcHm_v2.0_Chr3g0485571' => 'rch', 'RcHm_v2.0_Chr4g0416551' => 'rch', 'RcHm_v2.0_Chr5g0065831' => 'rch', 'Rhsim01G0230500' => 'rsi', 'Rhsim05G0194000' => 'rsi', 'Rhsim08G0250400' => 'rsi', 'Sabra02G0131000' => 'sbr', 'Sabra06G0066300' => 'sbr', 'Sabra08G0115500' => 'sbr', 'Sabra09G0023900' => 'sbr', 'Sabra10G0054000' => 'sbr', 'Sabra14G0081500' => 'sbr', 'Sabra16G0147100' => 'sbr', 'SalBow2G2957' => 'sbo', 'SalBow4G3320' => 'sbo', 'SalBow8G1894' => 'sbo', 'Sc07g0007950' => 'sci', 'Sc12g0001360' => 'sci', 'Sc13g0004330' => 'sci', 'Sc20g0005010' => 'sci', 'Sed0000361' => 'sed', 'Sed0001706' => 'sed', 'Sed0002422' => 'sed', 'Sed0004029' => 'sed', 'Sed0004602' => 'sed', 'Sed0004943' => 'sed', 'Sed0008646' => 'sed', 'Sed0023313' => 'sed', 'Sed0024843' => 'sed', 'SEGI_00081' => 'sgi', 'SEGI_00947' => 'sgi', 'SEGI_04046' => 'sgi', 'SEGI_06880' => 'sgi', 'SEGI_09736' => 'sgi', 'SEGI_12741' => 'sgi', 'SEGI_14530' => 'sgi', 'SEGI_20705' => 'sgi', 'SEGI_26088' => 'sgi', 'SEGI_28323' => 'sgi', 'SEGI_33343' => 'sgi', 'SGA_v2.0_scaffold126G33775' => 'sas', 'SGA_v2.0_scaffold2G01337' => 'sas', 'SGA_v2.0_scaffold38G15006' => 'sas', 'SGA_v2.0_scaffold39G15264' => 'sas', 'SGA_v2.0_scaffold453G51880' => 'sas', 'SHI12696' => 'shi', 'SMO367G1096' => 'smo', 'Solyc01g068630.3' => 'sly', 'Solyc05g011880.3' => 'sly', 'Solyc06g076300.3' => 'sly', 'Solyc09g010940.4' => 'sly', 'Solyc09g075890.3' => 'sly', 'Sopen01g030560' => 'spe', 'Sopen05g006630' => 'spe', 'Sopen06g032720' => 'spe', 'Sopen09g005660' => 'spe', 'Sopen09g030690' => 'spe', 'Sp4g14540' => 'spa', 'Sp4g20030' => 'spa', 'Sp5g01320' => 'spa', 'Sp6g21170' => 'spa', 'Sp6g21180' => 'spa', 'Sp6g21190' => 'spa', 'Sp6g40220' => 'spa', 'TAR362G0122' => 'tar', 'TAR362G1338' => 'tar', 'TAR369G0590' => 'tar', 'TAR371G0824' => 'tar', 'TAR622G1429' => 'tar', 'TAR623G0734' => 'tar', 'TAR625G0441' => 'tar', 'TAR629G0976' => 'tar', 'TAR633G1195' => 'tar', 'TAR636G2660' => 'tar', 'THA.LOC104799440' => 'tha', 'THA.LOC104800966' => 'tha', 'THA.LOC104806559' => 'tha', 'THA.LOC104810765' => 'tha', 'THA.LOC104816266' => 'tha', 'THA.LOC104817419' => 'tha', 'THA.LOC104827021' => 'tha', 'Thecc.01G327400' => 'tca', 'Thecc.04G229200' => 'tca', 'Thecc.05G037400' => 'tca', 'Thecc.09G318600' => 'tca', 'Thecc.09G318700' => 'tca', 'Thhalv10006238m.g' => 'esa', 'Thhalv10014321m.g' => 'esa', 'Thhalv10014335m.g' => 'esa', 'Thhalv10015826m.g' => 'esa', 'Thhalv10017107m.g' => 'esa', 'Thhalv10017180m.g' => 'esa', 'Thhalv10029339m.g' => 'esa', 'TPR.G1699' => 'tpr', 'TPR.G23609' => 'tpr', 'TPR.G3081' => 'tpr', 'TPR.G40397' => 'tpr', 'TPR.G5522' => 'tpr', 'TPR.G5618' => 'tpr', 'TPR.G5626' => 'tpr', 'TWI09G1632' => 'twi', 'TWI23G1230' => 'twi', 'TWI53G1064' => 'twi', 'TWI59G0751' => 'twi', 'TWI74G0947' => 'twi', 'TWI77G0337' => 'twi', 'TWI79G1254' => 'twi', 'unitig_0.g2341' => 'ugi', 'unitig_26.g10006' => 'ugi', 'unitig_26.g10008' => 'ugi', 'unitig_26.g9192' => 'ugi', 'vmacro14547' => 'vma', 'vmacro15333' => 'vma', 'vmacro18743' => 'vma', 'vmacro20166' => 'vma', 'VMungo0331G0523' => 'vmu', 'VMungo0331G1202' => 'vmu', 'VMungo0720G1228' => 'vmu', 'VMungo0720G1514' => 'vmu', 'VMungo1080G0169' => 'vmu', 'VMungo1127G1475' => 'vmu', 'VMungo1383G1208' => 'vmu', 'VMungo1383G1698' => 'vmu', 'Zm00001eb012270' => 'zma', 'Zm00001eb054100' => 'zma', 'Zm00001eb063350' => 'zma', 'Zm00001eb328560' => 'zma', 'Zm00001eb342820' => 'zma', 'Zm00001eb362210' => 'zma', 'Zm00001eb397730' => 'zma', 'Zm00001eb399750' => 'zma' ) $gf_id = 'HOM05D000959' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000959' ) $data_identifier = 'HOM05D000959' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 5, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 5, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 10, 'mbi' => (int) 3, 'mco' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 2, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 3, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 11, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399750' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000959', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '622', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p07100' => 'bna', 'A03p11720' => 'bna', 'A05p08300' => 'bna', 'A05p13380' => 'bna', 'A09p54130' => 'bna', 'A10p16690' => 'bna', 'A10p16700' => 'bna', 'A10p33390' => 'bna', 'Aa31LG10G16020' => 'aar', 'Aa31LG1G11810' => 'aar', 'Aa31LG1G11830' => 'aar', 'Aa31LG1G22510' => 'aar', 'Aa31LG5G4890' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5793' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2310' => 'aag', 'Actinidia08499' => 'ach', 'Actinidia11262' => 'ach', 'Actinidia23926' => 'ach', 'Actinidia34420' => 'ach', 'Actinidia36970' => 'ach', 'Ah.02g111220' => 'amhyb', 'Ah.15g097750' => 'amhyb', 'AL4G27500' => 'aly', 'AL6G11470' => 'aly', 'AL8G35950' => 'aly', 'AL8G35960' => 'aly', 'AL8G35970' => 'aly', 'Aqoxy1G00912' => 'aox', 'Aqoxy2G02253' => 'aox', 'Aqoxy2G02411' => 'aox', 'Aqoxy5G00485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BZ66YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K8ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM4FUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6BF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HFV7XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25JBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0YNNV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MAKK6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P70IT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP2Z6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V61LZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YWP64R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3S9AI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7PGHH' => 'arhy', 'AT2G32150' => 'ath', 'AT3G62040' => 'ath', 'AT5G02230' => 'ath', 'AT5G59480' => 'ath', 'AT5G59490' => 'ath', 'ATR0332G060' => 'atr', 'ATR0559G190' => 'atr', 'ATR0693G294' => 'atr', 'Atru.chr3.3975' => 'acertr', 'Atru.chr3.3976' => 'acertr', 'Atru.chr3.3977' => 'acertr', 'Atru.chr4.2498' => 'acertr', 'Atru.chr5.838' => 'acertr', 'Atru.chr8.1990' => 'acertr', 'Atru.chr8.1991' => 'acertr', 'Atru.chr8.1992' => 'acertr', 'AUR62001759' => 'cqu', 'AUR62009545' => 'cqu', 'AUR62010474' => 'cqu', 'AUR62025820' => 'cqu', 'AUR62030422' => 'cqu', 'AUR62033605' => 'cqu', 'AUR62038615' => 'cqu', 'AUR62041347' => 'cqu', 'BcaB01g04574' => 'bca', 'BcaB02g09263' => 'bca', 'BcaB02g10453' => 'bca', 'BcaB05g22513' => 'bca', 'BcaB08g36253' => 'bca', 'BcaB08g36254' => 'bca', 'BcaC01g06519' => 'bca', 'BcaC02g11889' => 'bca', 'BcaC03g14010' => 'bca', 'BcaC03g18439' => 'bca', 'BcaC04g19765' => 'bca', 'BcaC09g48432' => 'bca', 'BcaNung07302' => 'bca', 'BolC2t06040H' => 'bol', 'BolC2t07346H' => 'bol', 'BolC3t13817H' => 'bol', 'BolC4t22625H' => 'bol', 'BolC4t23297H' => 'bol', 'BolC8t51278H' => 'bol', 'BolC9t58050H' => 'bol', 'BolC9t58051H' => 'bol', 'BolC9t60163H' => 'bol', 'BraA02t04712Z' => 'bra', 'BraA02t05791Z' => 'bra', 'BraA03t10483Z' => 'bra', 'BraA05t19795Z' => 'bra', 'BraA05t20276Z' => 'bra', 'BraA09t40827Z' => 'bra', 'BraA10t43750Z' => 'bra', 'BraA10t43751Z' => 'bra', 'BraA10t45370Z' => 'bra', 'C02p00400' => 'bna', 'C02p12460' => 'bna', 'C03p13680' => 'bna', 'C04p10270' => 'bna', 'C04p17500' => 'bna', 'C08p37010' => 'bna', 'C09p51880' => 'bna', 'C09p51890' => 'bna', 'C09p74300' => 'bna', 'CAN.G179.26' => 'can', 'CAN.G3384.1' => 'can', 'CAN.G394.68' => 'can', 'CAN.G907.13' => 'can', 'CANSAT11G0012' => 'cansat', 'CANSAT25G1586' => 'cansat', 'CANSAT35G0735' => 'cansat', 'CANSAT54G0556' => 'cansat', 'CANSAT64G0356' => 'cansat', 'CANSAT78G2042' => 'cansat', 'CARHR125920' => 'chi', 'CARHR131910' => 'chi', 'CARHR172390' => 'chi', 'CARHR211140' => 'chi', 'CARHR285850' => 'chi', 'CARHR285860' => 'chi', 'Carub.0004s1347' => 'cru', 'Carub.0004s1960' => 'cru', 'Carub.0005s2880' => 'cru', 'Carub.0006s0107' => 'cru', 'Carub.0008s2015' => 'cru', 'Carub.0008s2016' => 'cru', 'Carub.0008s2017' => 'cru', 'Ca_01315_v3' => 'car', 'Ca_05063_v3' => 'car', 'Ca_10231_v3' => 'car', 'Ca_10913_v3' => 'car', 'Ca_19156_v3' => 'car', 'Ca_23644_v3' => 'car', 'Ca_26735_v3' => 'car', 'Cc01_g13130' => 'ccan', 'Cc02_g21690' => 'ccan', 'Cc03_g03600' => 'ccan', 'Cc06_g02510' => 'ccan', 'CDE02G1265' => 'cde', 'CDE05G0415' => 'cde', 'CDE08G1082' => 'cde', 'Cfa005780' => 'cfa', 'Cfa011522' => 'cfa', 'Cfa011523' => 'cfa', 'Cfa015627' => 'cfa', 'Cfa017359' => 'cfa', 'Ciclev10005687m.g' => 'ccl', 'Ciclev10012173m.g' => 'ccl', 'Ciclev10021621m.g' => 'ccl', 'Ciclev10028968m.g' => 'ccl', 'Ciclev10029907m.g' => 'ccl', 'CiPaw.01G164800' => 'cil', 'CiPaw.07G083700' => 'cil', 'CiPaw.07G127000' => 'cil', 'CiPaw.07G136900' => 'cil', 'CiPaw.08G081700' => 'cil', 'CiPaw.09G194600' => 'cil', 'CiPaw.10G146500' => 'cil', 'CiPaw.13G091500' => 'cil', 'CiPaw.13G091600' => 'cil', 'ClCG00G003390' => 'cla', 'ClCG01G007220' => 'cla', 'ClCG03G001370' => 'cla', 'ClCG04G008100' => 'cla', 'ClCG06G006110' => 'cla', 'ClCG06G006130' => 'cla', 'ClCG10G021210' => 'cla', 'COL.COLO4_07648' => 'col', 'COL.COLO4_07650' => 'col', 'COL.COLO4_07651' => 'col', 'COL.COLO4_14780' => 'col', 'COL.COLO4_18546' => 'col', 'COL.COLO4_18547' => 'col', 'COL.COLO4_23103' => 'col', 'COL.COLO4_30419' => 'col', 'COL.COLO4_34232' => 'col', 'Cpa.g.sc169.20' => 'cpa', 'Cpa.g.sc57.45' => 'cpa', 'Cpa.g.sc58.124' => 'cpa', 'Cpa.g.sc58.125' => 'cpa', 'Cpa.g.sc81.118' => 'cpa', 'Cpa.g.sc81.119' => 'cpa', 'Cre12.g524700' => 'cre', 'CsaV3_1G034430' => 'csa', 'CsaV3_1G034440' => 'csa', 'CsaV3_1G034450' => 'csa', 'CsaV3_3G034830' => 'csa', 'CsaV3_4G025090' => 'csa', 'CsaV3_5G018660' => 'csa', 'CsaV3_6G038160' => 'csa', 'CSS0003447' => 'camsi', 'CSS0017840' => 'camsi', 'CSS0019260' => 'camsi', 'CSS0040375' => 'camsi', 'CSS0042533' => 'camsi', 'DCAR_005960' => 'dca', 'DCAR_012104' => 'dca', 'DCAR_012105' => 'dca', 'DCAR_012293' => 'dca', 'DCAR_015632' => 'dca', 'DCAR_024602' => 'dca', 'DCAR_028752' => 'dca', 'Dinv06261' => 'din', 'Dinv13982' => 'din', 'Dinv17029' => 'din', 'Dinv18463' => 'din', 'Dinv33181' => 'din', 'Dinv35585' => 'din', 'Dinv37161' => 'din', 'Dinv42977' => 'din', 'Dinv43122' => 'din', 'Dinv44517' => 'din', 'Duzib093G0256' => 'dzi', 'Duzib106G1254' => 'dzi', 'Duzib128G1789' => 'dzi', 'Duzib133G0633' => 'dzi', 'Duzib138G0510' => 'dzi', 'Duzib150G1084' => 'dzi', 'Duzib168G0488' => 'dzi', 'Duzib168G1523' => 'dzi', 'Duzib170G0133' => 'dzi', 'ECA234G1433' => 'eca', 'ECA236G1432' => 'eca', 'ECA236G2256' => 'eca', 'ECA236G2365' => 'eca', 'ECA236G4830' => 'eca', 'ECA248G1505' => 'eca', 'EL10Ac3g06431' => 'bvu', 'EL10Ac5g12577' => 'bvu', 'EL10Ac6g13533' => 'bvu', 'EL10Ac7g16045' => 'bvu', 'Eucgr.A01281' => 'egr', 'Eucgr.B02326' => 'egr', 'Eucgr.H03532' => 'egr', 'Eucgr.K00553' => 'egr', 'Eucgr.K03116' => 'egr', 'FAN02G3963' => 'fan', 'FAN05G0438' => 'fan', 'FAN09G2434' => 'fan', 'FAN12G3984' => 'fan', 'FAN14G0798' => 'fan', 'FAN17G0652' => 'fan', 'FAN19G1988' => 'fan', 'FAN22G0632' => 'fan', 'FAN23G0387' => 'fan', 'FAN26G1323' => 'fan', 'FAN28G0666' => 'fan', 'FvH4_1g26080' => 'fve', 'FvH4_3g36780' => 'fve', 'FvH4_4g15270' => 'fve', 'FvH4_6g13490' => 'fve', 'Glyma.01G098700' => 'gma', 'Glyma.03G065900' => 'gma', 'Glyma.03G073754' => 'gma', 'Glyma.03G073758' => 'gma', 'Glyma.03G083200' => 'gma', 'Glyma.03G225500' => 'gma', 'Glyma.05G037766' => 'gma', 'Glyma.07G133500' => 'gma', 'Glyma.10G139400' => 'gma', 'Glyma.10G248900' => 'gma', 'Glyma.11G137800' => 'gma', 'Glyma.12G061300' => 'gma', 'Glyma.13G337900' => 'gma', 'Glyma.15G036600' => 'gma', 'Glyma.18G182800' => 'gma', 'Glyma.19G222500' => 'gma', 'Glyma.20G144800' => 'gma', 'Gohir.A01G222000' => 'ghi', 'Gohir.A03G044000' => 'ghi', 'Gohir.A03G044100' => 'ghi', 'Gohir.A04G083100' => 'ghi', 'Gohir.A07G127200' => 'ghi', 'Gohir.A07G132400' => 'ghi', 'Gohir.A08G000700' => 'ghi', 'Gohir.A11G327300' => 'ghi', 'Gohir.D01G211500' => 'ghi', 'Gohir.D03G123400' => 'ghi', 'Gohir.D03G123500' => 'ghi', 'Gohir.D04G121800' => 'ghi', 'Gohir.D07G131500' => 'ghi', 'Gohir.D07G136600' => 'ghi', 'Gohir.D08G011600' => 'ghi', 'Gohir.D11G346200' => 'ghi', 'Gorai.001G142800' => 'gra', 'Gorai.001G148700' => 'gra', 'Gorai.002G257300' => 'gra', 'Gorai.003G130000' => 'gra', 'Gorai.003G130100' => 'gra', 'Gorai.004G005300' => 'gra', 'Gorai.007G376500' => 'gra', 'Gorai.012G104700' => 'gra', 'GSVIVG01017946001' => 'vvi', 'GSVIVG01024928001' => 'vvi', 'GSVIVG01028227001' => 'vvi', 'GSVIVG01034151001' => 'vvi', 'HanXRQChr05g0135031' => 'han', 'HanXRQChr05g0135041' => 'han', 'HanXRQChr05g0140021' => 'han', 'HanXRQChr06g0178981' => 'han', 'HanXRQChr07g0188251' => 'han', 'HanXRQChr08g0235311' => 'han', 'HanXRQChr09g0271011' => 'han', 'HanXRQChr10g0293321' => 'han', 'HanXRQChr13g0388171' => 'han', 'Haze_00916' => 'cav', 'Haze_05063' => 'cav', 'Haze_20814' => 'cav', 'Haze_24128' => 'cav', 'Hma1.2p1_0745F.1_g212010' => 'hma', 'Hma1.2p1_0757F.1_g213260' => 'hma', 'Hma1.2p1_0936F.1_g238840' => 'hma', 'Hma1.2p1_1735F.1_g299890' => 'hma', 'Hma1.2p1_1861F.1_g305685' => 'hma', 'HPP92_003397' => 'vpl', 'HPP92_012597' => 'vpl', 'HPP92_015520' => 'vpl', 'HPP92_015539' => 'vpl', 'HPP92_020373' => 'vpl', 'Hund04938' => 'sun', 'Hund10677' => 'sun', 'Hund11033' => 'sun', 'Hund12155' => 'sun', 'Lalb_Chr01g0022551' => 'lal', 'Lalb_Chr03g0042341' => 'lal', 'Lalb_Chr07g0192931' => 'lal', 'Lalb_Chr12g0209551' => 'lal', 'Lalb_Chr19g0125251' => 'lal', 'Lalb_Chr19g0137891' => 'lal', 'Lalb_Chr21g0304641' => 'lal', 'Lalb_Chr21g0309881' => 'lal', 'Lj1A5T12' => 'lonja', 'Lj1C148G10' => 'lonja', 'Lj2A93T83' => 'lonja', 'Lj3A738G68' => 'lonja', 'Lj3C966T1' => 'lonja', 'Lj3g0018958' => 'lja', 'Lj3g0021831' => 'lja', 'Lj3g0025443' => 'lja', 'Lj4g0026809' => 'lja', 'Lj5g0012558' => 'lja', 'Lj5g0021586' => 'lja', 'Lsat_1_v5_gn_5_156840' => 'lsa', 'Lsat_1_v5_gn_8_73460' => 'lsa', 'Lsat_1_v5_gn_8_73481' => 'lsa', 'Lsat_1_v5_gn_9_31601' => 'lsa', 'Lsat_1_v5_gn_9_77320' => 'lsa', 'Manes.01G171300' => 'mes', 'Manes.01G171400' => 'mes', 'Manes.01G236100' => 'mes', 'Manes.02G130500' => 'mes', 'Manes.02G130600' => 'mes', 'Manes.03G180200' => 'mes', 'Manes.05G007000' => 'mes', 'Manes.08G084400' => 'mes', 'Manes.09G092600' => 'mes', 'Manes.15G027900' => 'mes', 'MBI04_g40948_MAGBIO' => 'mbi', 'MBI14_g12123_MAGBIO' => 'mbi', 'MBI18_g28915_MAGBIO' => 'mbi', 'MCO09G053' => 'mco', 'MCO11G782' => 'mco', 'MCO15G215' => 'mco', 'MD03G1088500' => 'mdo', 'MD03G1088600' => 'mdo', 'MD04G1130800' => 'mdo', 'MD09G1291700' => 'mdo', 'MD11G1097500' => 'mdo', 'MD11G1097600' => 'mdo', 'MD12G1143900' => 'mdo', 'MD13G1191400' => 'mdo', 'MD16G1191500' => 'mdo', 'Medtr1g085570' => 'mtr', 'Medtr1g104610' => 'mtr', 'Medtr2g097520' => 'mtr', 'Medtr4g021800' => 'mtr', 'Medtr4g021825' => 'mtr', 'Medtr4g064270' => 'mtr', 'Medtr4g064380' => 'mtr', 'Medtr7g062150' => 'mtr', 'MELO3C003138.2' => 'cme', 'MELO3C005187.2' => 'cme', 'MELO3C009252.2' => 'cme', 'MELO3C014481.2' => 'cme', 'MELO3C020616.2' => 'cme', 'MELO3C020617.2' => 'cme', 'MELO3C020618.2' => 'cme', 'Migut.G00328' => 'egut', 'Migut.J00320' => 'egut', 'Migut.L01000' => 'egut', 'Migut.L01953' => 'egut', 'MSTRG.10253' => 'ama', 'MSTRG.19077' => 'ama', 'MSTRG.26780' => 'ama', 'MSTRG.4023' => 'ama', 'MSTRG.5655' => 'ama', 'MSTRG.9992' => 'ama', 'Nitab4.5_0000043g0310' => 'nta', 'Nitab4.5_0000463g0080' => 'nta', 'Nitab4.5_0000705g0170' => 'nta', 'Nitab4.5_0001326g0060' => 'nta', 'Nitab4.5_0001628g0030' => 'nta', 'Nitab4.5_0002103g0110' => 'nta', 'Nitab4.5_0002946g0030' => 'nta', 'Nitab4.5_0004639g0030' => 'nta', 'Nn2g11149' => 'nnu', 'Nn2g13389' => 'nnu', 'Nn4g25326' => 'nnu', 'Nn4g26290' => 'nnu', 'Nn5g29865' => 'nnu', 'Oeu004163.1' => 'oeu', 'Oeu006901.1' => 'oeu', 'Oeu010096.1' => 'oeu', 'Oeu024340.1' => 'oeu', 'Oeu048369.1' => 'oeu', 'Os01g0973000' => 'osa', 'Os03g0273800' => 'osa', 'Os03g0701200' => 'osa', 'Os03g0834050' => 'osa', 'Os07g0634400' => 'osa', 'Peaxi162Scf00092g01414' => 'pax', 'Peaxi162Scf00165g00818' => 'pax', 'Peaxi162Scf00309g00516' => 'pax', 'Peaxi162Scf00774g00218' => 'pax', 'PGR004G1824' => 'pgr', 'PGR004G2606' => 'pgr', 'PGR031G2716' => 'pgr', 'PGR102G2460' => 'pgr', 'PGR142G2599' => 'pgr', 'PGSC0003DMG400000843' => 'stu', 'PGSC0003DMG400008829' => 'stu', 'PGSC0003DMG400030418' => 'stu', 'PGSC0003DMG400031834' => 'stu', 'PGSC0003DMG401028300' => 'stu', 'PGSC0003DMG402028300' => 'stu', 'Phvul.001G219300' => 'pvu', 'Phvul.007G056000' => 'pvu', 'Phvul.007G208000' => 'pvu', 'Phvul.008G119500' => 'pvu', 'Phvul.010G011200' => 'pvu', 'Phvul.010G014800' => 'pvu', 'Phvul.011G062900' => 'pvu', 'Phvul.L007043' => 'pvu', 'Potri.001G242300' => 'ptr', 'Potri.002G185300' => 'ptr', 'Potri.006G086900' => 'ptr', 'Potri.008G151700' => 'ptr', 'Potri.009G033500' => 'ptr', 'Potri.010G089300' => 'ptr', 'Potri.014G110800' => 'ptr', 'Pp3c27_8130' => 'ppa', 'Pp3c6_27410' => 'ppa', 'PRCOL_00001659' => 'pco', 'PRCOL_00001927' => 'pco', 'PRCOL_00003649' => 'pco', 'Prupe.1G011600' => 'ppe', 'Prupe.3G000800' => 'ppe', 'Prupe.3G001100' => 'ppe', 'Prupe.6G072700' => 'ppe', 'Prupe.6G072800' => 'ppe', 'Prupe.6G257300' => 'ppe', 'Prupe.8G033000' => 'ppe', 'Psat0s2633g0080' => 'psa', 'Psat0s3396g0080' => 'psa', 'Psat0s3396g0200' => 'psa', 'Psat3g139080' => 'psa', 'Psat5g285080' => 'psa', 'Psat6g157760' => 'psa', 'Psat6g208440' => 'psa', 'Psat7g215320' => 'psa', 'Psat7g215400' => 'psa', 'Psat7g235600' => 'psa', 'Psat7g235760' => 'psa', 'PSO063G4603' => 'pso', 'PSO210G0182' => 'pso', 'PSO210G0196' => 'pso', 'PSO339G0394' => 'pso', 'PSO339G4127' => 'pso', 'PSO513G0064' => 'pso', 'PSO761G0079' => 'pso', 'QL01p031003' => 'qlo', 'QL01p031078' => 'qlo', 'QL06p003004' => 'qlo', 'QL07p048731' => 'qlo', 'QL09p037427' => 'qlo', 'RcHm_v2.0_Chr3g0466361' => 'rch', 'RcHm_v2.0_Chr3g0485571' => 'rch', 'RcHm_v2.0_Chr4g0416551' => 'rch', 'RcHm_v2.0_Chr5g0065831' => 'rch', 'Rhsim01G0230500' => 'rsi', 'Rhsim05G0194000' => 'rsi', 'Rhsim08G0250400' => 'rsi', 'Sabra02G0131000' => 'sbr', 'Sabra06G0066300' => 'sbr', 'Sabra08G0115500' => 'sbr', 'Sabra09G0023900' => 'sbr', 'Sabra10G0054000' => 'sbr', 'Sabra14G0081500' => 'sbr', 'Sabra16G0147100' => 'sbr', 'SalBow2G2957' => 'sbo', 'SalBow4G3320' => 'sbo', 'SalBow8G1894' => 'sbo', 'Sc07g0007950' => 'sci', 'Sc12g0001360' => 'sci', 'Sc13g0004330' => 'sci', 'Sc20g0005010' => 'sci', 'Sed0000361' => 'sed', 'Sed0001706' => 'sed', 'Sed0002422' => 'sed', 'Sed0004029' => 'sed', 'Sed0004602' => 'sed', 'Sed0004943' => 'sed', 'Sed0008646' => 'sed', 'Sed0023313' => 'sed', 'Sed0024843' => 'sed', 'SEGI_00081' => 'sgi', 'SEGI_00947' => 'sgi', 'SEGI_04046' => 'sgi', 'SEGI_06880' => 'sgi', 'SEGI_09736' => 'sgi', 'SEGI_12741' => 'sgi', 'SEGI_14530' => 'sgi', 'SEGI_20705' => 'sgi', 'SEGI_26088' => 'sgi', 'SEGI_28323' => 'sgi', 'SEGI_33343' => 'sgi', 'SGA_v2.0_scaffold126G33775' => 'sas', 'SGA_v2.0_scaffold2G01337' => 'sas', 'SGA_v2.0_scaffold38G15006' => 'sas', 'SGA_v2.0_scaffold39G15264' => 'sas', 'SGA_v2.0_scaffold453G51880' => 'sas', 'SHI12696' => 'shi', 'SMO367G1096' => 'smo', 'Solyc01g068630.3' => 'sly', 'Solyc05g011880.3' => 'sly', 'Solyc06g076300.3' => 'sly', 'Solyc09g010940.4' => 'sly', 'Solyc09g075890.3' => 'sly', 'Sopen01g030560' => 'spe', 'Sopen05g006630' => 'spe', 'Sopen06g032720' => 'spe', 'Sopen09g005660' => 'spe', 'Sopen09g030690' => 'spe', 'Sp4g14540' => 'spa', 'Sp4g20030' => 'spa', 'Sp5g01320' => 'spa', 'Sp6g21170' => 'spa', 'Sp6g21180' => 'spa', 'Sp6g21190' => 'spa', 'Sp6g40220' => 'spa', 'TAR362G0122' => 'tar', 'TAR362G1338' => 'tar', 'TAR369G0590' => 'tar', 'TAR371G0824' => 'tar', 'TAR622G1429' => 'tar', 'TAR623G0734' => 'tar', 'TAR625G0441' => 'tar', 'TAR629G0976' => 'tar', 'TAR633G1195' => 'tar', 'TAR636G2660' => 'tar', 'THA.LOC104799440' => 'tha', 'THA.LOC104800966' => 'tha', 'THA.LOC104806559' => 'tha', 'THA.LOC104810765' => 'tha', 'THA.LOC104816266' => 'tha', 'THA.LOC104817419' => 'tha', 'THA.LOC104827021' => 'tha', 'Thecc.01G327400' => 'tca', 'Thecc.04G229200' => 'tca', 'Thecc.05G037400' => 'tca', 'Thecc.09G318600' => 'tca', 'Thecc.09G318700' => 'tca', 'Thhalv10006238m.g' => 'esa', 'Thhalv10014321m.g' => 'esa', 'Thhalv10014335m.g' => 'esa', 'Thhalv10015826m.g' => 'esa', 'Thhalv10017107m.g' => 'esa', 'Thhalv10017180m.g' => 'esa', 'Thhalv10029339m.g' => 'esa', 'TPR.G1699' => 'tpr', 'TPR.G23609' => 'tpr', 'TPR.G3081' => 'tpr', 'TPR.G40397' => 'tpr', 'TPR.G5522' => 'tpr', 'TPR.G5618' => 'tpr', 'TPR.G5626' => 'tpr', 'TWI09G1632' => 'twi', 'TWI23G1230' => 'twi', 'TWI53G1064' => 'twi', 'TWI59G0751' => 'twi', 'TWI74G0947' => 'twi', 'TWI77G0337' => 'twi', 'TWI79G1254' => 'twi', 'unitig_0.g2341' => 'ugi', 'unitig_26.g10006' => 'ugi', 'unitig_26.g10008' => 'ugi', 'unitig_26.g9192' => 'ugi', 'vmacro14547' => 'vma', 'vmacro15333' => 'vma', 'vmacro18743' => 'vma', 'vmacro20166' => 'vma', 'VMungo0331G0523' => 'vmu', 'VMungo0331G1202' => 'vmu', 'VMungo0720G1228' => 'vmu', 'VMungo0720G1514' => 'vmu', 'VMungo1080G0169' => 'vmu', 'VMungo1127G1475' => 'vmu', 'VMungo1383G1208' => 'vmu', 'VMungo1383G1698' => 'vmu', 'Zm00001eb012270' => 'zma', 'Zm00001eb054100' => 'zma', 'Zm00001eb063350' => 'zma', 'Zm00001eb328560' => 'zma', 'Zm00001eb342820' => 'zma', 'Zm00001eb362210' => 'zma', 'Zm00001eb397730' => 'zma', 'Zm00001eb399750' => 'zma' ), 'gf_id' => 'HOM05D000959', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000959' ), 'data_identifier' => 'HOM05D000959', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000959', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '622', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p07100' => 'bna', 'A03p11720' => 'bna', 'A05p08300' => 'bna', 'A05p13380' => 'bna', 'A09p54130' => 'bna', 'A10p16690' => 'bna', 'A10p16700' => 'bna', 'A10p33390' => 'bna', 'Aa31LG10G16020' => 'aar', 'Aa31LG1G11810' => 'aar', 'Aa31LG1G11830' => 'aar', 'Aa31LG1G22510' => 'aar', 'Aa31LG5G4890' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5793' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2310' => 'aag', 'Actinidia08499' => 'ach', 'Actinidia11262' => 'ach', 'Actinidia23926' => 'ach', 'Actinidia34420' => 'ach', 'Actinidia36970' => 'ach', 'Ah.02g111220' => 'amhyb', 'Ah.15g097750' => 'amhyb', 'AL4G27500' => 'aly', 'AL6G11470' => 'aly', 'AL8G35950' => 'aly', 'AL8G35960' => 'aly', 'AL8G35970' => 'aly', 'Aqoxy1G00912' => 'aox', 'Aqoxy2G02253' => 'aox', 'Aqoxy2G02411' => 'aox', 'Aqoxy5G00485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BZ66YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K8ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM4FUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6BF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HFV7XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25JBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0YNNV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MAKK6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P70IT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP2Z6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V61LZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YWP64R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3S9AI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7PGHH' => 'arhy', 'AT2G32150' => 'ath', 'AT3G62040' => 'ath', 'AT5G02230' => 'ath', 'AT5G59480' => 'ath', 'AT5G59490' => 'ath', 'ATR0332G060' => 'atr', 'ATR0559G190' => 'atr', 'ATR0693G294' => 'atr', 'Atru.chr3.3975' => 'acertr', 'Atru.chr3.3976' => 'acertr', 'Atru.chr3.3977' => 'acertr', 'Atru.chr4.2498' => 'acertr', 'Atru.chr5.838' => 'acertr', 'Atru.chr8.1990' => 'acertr', 'Atru.chr8.1991' => 'acertr', 'Atru.chr8.1992' => 'acertr', 'AUR62001759' => 'cqu', 'AUR62009545' => 'cqu', 'AUR62010474' => 'cqu', 'AUR62025820' => 'cqu', 'AUR62030422' => 'cqu', 'AUR62033605' => 'cqu', 'AUR62038615' => 'cqu', 'AUR62041347' => 'cqu', 'BcaB01g04574' => 'bca', 'BcaB02g09263' => 'bca', 'BcaB02g10453' => 'bca', 'BcaB05g22513' => 'bca', 'BcaB08g36253' => 'bca', 'BcaB08g36254' => 'bca', 'BcaC01g06519' => 'bca', 'BcaC02g11889' => 'bca', 'BcaC03g14010' => 'bca', 'BcaC03g18439' => 'bca', 'BcaC04g19765' => 'bca', 'BcaC09g48432' => 'bca', 'BcaNung07302' => 'bca', 'BolC2t06040H' => 'bol', 'BolC2t07346H' => 'bol', 'BolC3t13817H' => 'bol', 'BolC4t22625H' => 'bol', 'BolC4t23297H' => 'bol', 'BolC8t51278H' => 'bol', 'BolC9t58050H' => 'bol', 'BolC9t58051H' => 'bol', 'BolC9t60163H' => 'bol', 'BraA02t04712Z' => 'bra', 'BraA02t05791Z' => 'bra', 'BraA03t10483Z' => 'bra', 'BraA05t19795Z' => 'bra', 'BraA05t20276Z' => 'bra', 'BraA09t40827Z' => 'bra', 'BraA10t43750Z' => 'bra', 'BraA10t43751Z' => 'bra', 'BraA10t45370Z' => 'bra', 'C02p00400' => 'bna', 'C02p12460' => 'bna', 'C03p13680' => 'bna', 'C04p10270' => 'bna', 'C04p17500' => 'bna', 'C08p37010' => 'bna', 'C09p51880' => 'bna', 'C09p51890' => 'bna', 'C09p74300' => 'bna', 'CAN.G179.26' => 'can', 'CAN.G3384.1' => 'can', 'CAN.G394.68' => 'can', 'CAN.G907.13' => 'can', 'CANSAT11G0012' => 'cansat', 'CANSAT25G1586' => 'cansat', 'CANSAT35G0735' => 'cansat', 'CANSAT54G0556' => 'cansat', 'CANSAT64G0356' => 'cansat', 'CANSAT78G2042' => 'cansat', 'CARHR125920' => 'chi', 'CARHR131910' => 'chi', 'CARHR172390' => 'chi', 'CARHR211140' => 'chi', 'CARHR285850' => 'chi', 'CARHR285860' => 'chi', 'Carub.0004s1347' => 'cru', 'Carub.0004s1960' => 'cru', 'Carub.0005s2880' => 'cru', 'Carub.0006s0107' => 'cru', 'Carub.0008s2015' => 'cru', 'Carub.0008s2016' => 'cru', 'Carub.0008s2017' => 'cru', 'Ca_01315_v3' => 'car', 'Ca_05063_v3' => 'car', 'Ca_10231_v3' => 'car', 'Ca_10913_v3' => 'car', 'Ca_19156_v3' => 'car', 'Ca_23644_v3' => 'car', 'Ca_26735_v3' => 'car', 'Cc01_g13130' => 'ccan', 'Cc02_g21690' => 'ccan', 'Cc03_g03600' => 'ccan', 'Cc06_g02510' => 'ccan', 'CDE02G1265' => 'cde', 'CDE05G0415' => 'cde', 'CDE08G1082' => 'cde', 'Cfa005780' => 'cfa', 'Cfa011522' => 'cfa', 'Cfa011523' => 'cfa', 'Cfa015627' => 'cfa', 'Cfa017359' => 'cfa', 'Ciclev10005687m.g' => 'ccl', 'Ciclev10012173m.g' => 'ccl', 'Ciclev10021621m.g' => 'ccl', 'Ciclev10028968m.g' => 'ccl', 'Ciclev10029907m.g' => 'ccl', 'CiPaw.01G164800' => 'cil', 'CiPaw.07G083700' => 'cil', 'CiPaw.07G127000' => 'cil', 'CiPaw.07G136900' => 'cil', 'CiPaw.08G081700' => 'cil', 'CiPaw.09G194600' => 'cil', 'CiPaw.10G146500' => 'cil', 'CiPaw.13G091500' => 'cil', 'CiPaw.13G091600' => 'cil', 'ClCG00G003390' => 'cla', 'ClCG01G007220' => 'cla', 'ClCG03G001370' => 'cla', 'ClCG04G008100' => 'cla', 'ClCG06G006110' => 'cla', 'ClCG06G006130' => 'cla', 'ClCG10G021210' => 'cla', 'COL.COLO4_07648' => 'col', 'COL.COLO4_07650' => 'col', 'COL.COLO4_07651' => 'col', 'COL.COLO4_14780' => 'col', 'COL.COLO4_18546' => 'col', 'COL.COLO4_18547' => 'col', 'COL.COLO4_23103' => 'col', 'COL.COLO4_30419' => 'col', 'COL.COLO4_34232' => 'col', 'Cpa.g.sc169.20' => 'cpa', 'Cpa.g.sc57.45' => 'cpa', 'Cpa.g.sc58.124' => 'cpa', 'Cpa.g.sc58.125' => 'cpa', 'Cpa.g.sc81.118' => 'cpa', 'Cpa.g.sc81.119' => 'cpa', 'Cre12.g524700' => 'cre', 'CsaV3_1G034430' => 'csa', 'CsaV3_1G034440' => 'csa', 'CsaV3_1G034450' => 'csa', 'CsaV3_3G034830' => 'csa', 'CsaV3_4G025090' => 'csa', 'CsaV3_5G018660' => 'csa', 'CsaV3_6G038160' => 'csa', 'CSS0003447' => 'camsi', 'CSS0017840' => 'camsi', 'CSS0019260' => 'camsi', 'CSS0040375' => 'camsi', 'CSS0042533' => 'camsi', 'DCAR_005960' => 'dca', 'DCAR_012104' => 'dca', 'DCAR_012105' => 'dca', 'DCAR_012293' => 'dca', 'DCAR_015632' => 'dca', 'DCAR_024602' => 'dca', 'DCAR_028752' => 'dca', 'Dinv06261' => 'din', 'Dinv13982' => 'din', 'Dinv17029' => 'din', 'Dinv18463' => 'din', 'Dinv33181' => 'din', 'Dinv35585' => 'din', 'Dinv37161' => 'din', 'Dinv42977' => 'din', 'Dinv43122' => 'din', 'Dinv44517' => 'din', 'Duzib093G0256' => 'dzi', 'Duzib106G1254' => 'dzi', 'Duzib128G1789' => 'dzi', 'Duzib133G0633' => 'dzi', 'Duzib138G0510' => 'dzi', 'Duzib150G1084' => 'dzi', 'Duzib168G0488' => 'dzi', 'Duzib168G1523' => 'dzi', 'Duzib170G0133' => 'dzi', 'ECA234G1433' => 'eca', 'ECA236G1432' => 'eca', 'ECA236G2256' => 'eca', 'ECA236G2365' => 'eca', 'ECA236G4830' => 'eca', 'ECA248G1505' => 'eca', 'EL10Ac3g06431' => 'bvu', 'EL10Ac5g12577' => 'bvu', 'EL10Ac6g13533' => 'bvu', 'EL10Ac7g16045' => 'bvu', 'Eucgr.A01281' => 'egr', 'Eucgr.B02326' => 'egr', 'Eucgr.H03532' => 'egr', 'Eucgr.K00553' => 'egr', 'Eucgr.K03116' => 'egr', 'FAN02G3963' => 'fan', 'FAN05G0438' => 'fan', 'FAN09G2434' => 'fan', 'FAN12G3984' => 'fan', 'FAN14G0798' => 'fan', 'FAN17G0652' => 'fan', 'FAN19G1988' => 'fan', 'FAN22G0632' => 'fan', 'FAN23G0387' => 'fan', 'FAN26G1323' => 'fan', 'FAN28G0666' => 'fan', 'FvH4_1g26080' => 'fve', 'FvH4_3g36780' => 'fve', 'FvH4_4g15270' => 'fve', 'FvH4_6g13490' => 'fve', 'Glyma.01G098700' => 'gma', 'Glyma.03G065900' => 'gma', 'Glyma.03G073754' => 'gma', 'Glyma.03G073758' => 'gma', 'Glyma.03G083200' => 'gma', 'Glyma.03G225500' => 'gma', 'Glyma.05G037766' => 'gma', 'Glyma.07G133500' => 'gma', 'Glyma.10G139400' => 'gma', 'Glyma.10G248900' => 'gma', 'Glyma.11G137800' => 'gma', 'Glyma.12G061300' => 'gma', 'Glyma.13G337900' => 'gma', 'Glyma.15G036600' => 'gma', 'Glyma.18G182800' => 'gma', 'Glyma.19G222500' => 'gma', 'Glyma.20G144800' => 'gma', 'Gohir.A01G222000' => 'ghi', 'Gohir.A03G044000' => 'ghi', 'Gohir.A03G044100' => 'ghi', 'Gohir.A04G083100' => 'ghi', 'Gohir.A07G127200' => 'ghi', 'Gohir.A07G132400' => 'ghi', 'Gohir.A08G000700' => 'ghi', 'Gohir.A11G327300' => 'ghi', 'Gohir.D01G211500' => 'ghi', 'Gohir.D03G123400' => 'ghi', 'Gohir.D03G123500' => 'ghi', 'Gohir.D04G121800' => 'ghi', 'Gohir.D07G131500' => 'ghi', 'Gohir.D07G136600' => 'ghi', 'Gohir.D08G011600' => 'ghi', 'Gohir.D11G346200' => 'ghi', 'Gorai.001G142800' => 'gra', 'Gorai.001G148700' => 'gra', 'Gorai.002G257300' => 'gra', 'Gorai.003G130000' => 'gra', 'Gorai.003G130100' => 'gra', 'Gorai.004G005300' => 'gra', 'Gorai.007G376500' => 'gra', 'Gorai.012G104700' => 'gra', 'GSVIVG01017946001' => 'vvi', 'GSVIVG01024928001' => 'vvi', 'GSVIVG01028227001' => 'vvi', 'GSVIVG01034151001' => 'vvi', 'HanXRQChr05g0135031' => 'han', 'HanXRQChr05g0135041' => 'han', 'HanXRQChr05g0140021' => 'han', 'HanXRQChr06g0178981' => 'han', 'HanXRQChr07g0188251' => 'han', 'HanXRQChr08g0235311' => 'han', 'HanXRQChr09g0271011' => 'han', 'HanXRQChr10g0293321' => 'han', 'HanXRQChr13g0388171' => 'han', 'Haze_00916' => 'cav', 'Haze_05063' => 'cav', 'Haze_20814' => 'cav', 'Haze_24128' => 'cav', 'Hma1.2p1_0745F.1_g212010' => 'hma', 'Hma1.2p1_0757F.1_g213260' => 'hma', 'Hma1.2p1_0936F.1_g238840' => 'hma', 'Hma1.2p1_1735F.1_g299890' => 'hma', 'Hma1.2p1_1861F.1_g305685' => 'hma', 'HPP92_003397' => 'vpl', 'HPP92_012597' => 'vpl', 'HPP92_015520' => 'vpl', 'HPP92_015539' => 'vpl', 'HPP92_020373' => 'vpl', 'Hund04938' => 'sun', 'Hund10677' => 'sun', 'Hund11033' => 'sun', 'Hund12155' => 'sun', 'Lalb_Chr01g0022551' => 'lal', 'Lalb_Chr03g0042341' => 'lal', 'Lalb_Chr07g0192931' => 'lal', 'Lalb_Chr12g0209551' => 'lal', 'Lalb_Chr19g0125251' => 'lal', 'Lalb_Chr19g0137891' => 'lal', 'Lalb_Chr21g0304641' => 'lal', 'Lalb_Chr21g0309881' => 'lal', 'Lj1A5T12' => 'lonja', 'Lj1C148G10' => 'lonja', 'Lj2A93T83' => 'lonja', 'Lj3A738G68' => 'lonja', 'Lj3C966T1' => 'lonja', 'Lj3g0018958' => 'lja', 'Lj3g0021831' => 'lja', 'Lj3g0025443' => 'lja', 'Lj4g0026809' => 'lja', 'Lj5g0012558' => 'lja', 'Lj5g0021586' => 'lja', 'Lsat_1_v5_gn_5_156840' => 'lsa', 'Lsat_1_v5_gn_8_73460' => 'lsa', 'Lsat_1_v5_gn_8_73481' => 'lsa', 'Lsat_1_v5_gn_9_31601' => 'lsa', 'Lsat_1_v5_gn_9_77320' => 'lsa', 'Manes.01G171300' => 'mes', 'Manes.01G171400' => 'mes', 'Manes.01G236100' => 'mes', 'Manes.02G130500' => 'mes', 'Manes.02G130600' => 'mes', 'Manes.03G180200' => 'mes', 'Manes.05G007000' => 'mes', 'Manes.08G084400' => 'mes', 'Manes.09G092600' => 'mes', 'Manes.15G027900' => 'mes', 'MBI04_g40948_MAGBIO' => 'mbi', 'MBI14_g12123_MAGBIO' => 'mbi', 'MBI18_g28915_MAGBIO' => 'mbi', 'MCO09G053' => 'mco', 'MCO11G782' => 'mco', 'MCO15G215' => 'mco', 'MD03G1088500' => 'mdo', 'MD03G1088600' => 'mdo', 'MD04G1130800' => 'mdo', 'MD09G1291700' => 'mdo', 'MD11G1097500' => 'mdo', 'MD11G1097600' => 'mdo', 'MD12G1143900' => 'mdo', 'MD13G1191400' => 'mdo', 'MD16G1191500' => 'mdo', 'Medtr1g085570' => 'mtr', 'Medtr1g104610' => 'mtr', 'Medtr2g097520' => 'mtr', 'Medtr4g021800' => 'mtr', 'Medtr4g021825' => 'mtr', 'Medtr4g064270' => 'mtr', 'Medtr4g064380' => 'mtr', 'Medtr7g062150' => 'mtr', 'MELO3C003138.2' => 'cme', 'MELO3C005187.2' => 'cme', 'MELO3C009252.2' => 'cme', 'MELO3C014481.2' => 'cme', 'MELO3C020616.2' => 'cme', 'MELO3C020617.2' => 'cme', 'MELO3C020618.2' => 'cme', 'Migut.G00328' => 'egut', 'Migut.J00320' => 'egut', 'Migut.L01000' => 'egut', 'Migut.L01953' => 'egut', 'MSTRG.10253' => 'ama', 'MSTRG.19077' => 'ama', 'MSTRG.26780' => 'ama', 'MSTRG.4023' => 'ama', 'MSTRG.5655' => 'ama', 'MSTRG.9992' => 'ama', 'Nitab4.5_0000043g0310' => 'nta', 'Nitab4.5_0000463g0080' => 'nta', 'Nitab4.5_0000705g0170' => 'nta', 'Nitab4.5_0001326g0060' => 'nta', 'Nitab4.5_0001628g0030' => 'nta', 'Nitab4.5_0002103g0110' => 'nta', 'Nitab4.5_0002946g0030' => 'nta', 'Nitab4.5_0004639g0030' => 'nta', 'Nn2g11149' => 'nnu', 'Nn2g13389' => 'nnu', 'Nn4g25326' => 'nnu', 'Nn4g26290' => 'nnu', 'Nn5g29865' => 'nnu', 'Oeu004163.1' => 'oeu', 'Oeu006901.1' => 'oeu', 'Oeu010096.1' => 'oeu', 'Oeu024340.1' => 'oeu', 'Oeu048369.1' => 'oeu', 'Os01g0973000' => 'osa', 'Os03g0273800' => 'osa', 'Os03g0701200' => 'osa', 'Os03g0834050' => 'osa', 'Os07g0634400' => 'osa', 'Peaxi162Scf00092g01414' => 'pax', 'Peaxi162Scf00165g00818' => 'pax', 'Peaxi162Scf00309g00516' => 'pax', 'Peaxi162Scf00774g00218' => 'pax', 'PGR004G1824' => 'pgr', 'PGR004G2606' => 'pgr', 'PGR031G2716' => 'pgr', 'PGR102G2460' => 'pgr', 'PGR142G2599' => 'pgr', 'PGSC0003DMG400000843' => 'stu', 'PGSC0003DMG400008829' => 'stu', 'PGSC0003DMG400030418' => 'stu', 'PGSC0003DMG400031834' => 'stu', 'PGSC0003DMG401028300' => 'stu', 'PGSC0003DMG402028300' => 'stu', 'Phvul.001G219300' => 'pvu', 'Phvul.007G056000' => 'pvu', 'Phvul.007G208000' => 'pvu', 'Phvul.008G119500' => 'pvu', 'Phvul.010G011200' => 'pvu', 'Phvul.010G014800' => 'pvu', 'Phvul.011G062900' => 'pvu', 'Phvul.L007043' => 'pvu', 'Potri.001G242300' => 'ptr', 'Potri.002G185300' => 'ptr', 'Potri.006G086900' => 'ptr', 'Potri.008G151700' => 'ptr', 'Potri.009G033500' => 'ptr', 'Potri.010G089300' => 'ptr', 'Potri.014G110800' => 'ptr', 'Pp3c27_8130' => 'ppa', 'Pp3c6_27410' => 'ppa', 'PRCOL_00001659' => 'pco', 'PRCOL_00001927' => 'pco', 'PRCOL_00003649' => 'pco', 'Prupe.1G011600' => 'ppe', 'Prupe.3G000800' => 'ppe', 'Prupe.3G001100' => 'ppe', 'Prupe.6G072700' => 'ppe', 'Prupe.6G072800' => 'ppe', 'Prupe.6G257300' => 'ppe', 'Prupe.8G033000' => 'ppe', 'Psat0s2633g0080' => 'psa', 'Psat0s3396g0080' => 'psa', 'Psat0s3396g0200' => 'psa', 'Psat3g139080' => 'psa', 'Psat5g285080' => 'psa', 'Psat6g157760' => 'psa', 'Psat6g208440' => 'psa', 'Psat7g215320' => 'psa', 'Psat7g215400' => 'psa', 'Psat7g235600' => 'psa', 'Psat7g235760' => 'psa', 'PSO063G4603' => 'pso', 'PSO210G0182' => 'pso', 'PSO210G0196' => 'pso', 'PSO339G0394' => 'pso', 'PSO339G4127' => 'pso', 'PSO513G0064' => 'pso', 'PSO761G0079' => 'pso', 'QL01p031003' => 'qlo', 'QL01p031078' => 'qlo', 'QL06p003004' => 'qlo', 'QL07p048731' => 'qlo', 'QL09p037427' => 'qlo', 'RcHm_v2.0_Chr3g0466361' => 'rch', 'RcHm_v2.0_Chr3g0485571' => 'rch', 'RcHm_v2.0_Chr4g0416551' => 'rch', 'RcHm_v2.0_Chr5g0065831' => 'rch', 'Rhsim01G0230500' => 'rsi', 'Rhsim05G0194000' => 'rsi', 'Rhsim08G0250400' => 'rsi', 'Sabra02G0131000' => 'sbr', 'Sabra06G0066300' => 'sbr', 'Sabra08G0115500' => 'sbr', 'Sabra09G0023900' => 'sbr', 'Sabra10G0054000' => 'sbr', 'Sabra14G0081500' => 'sbr', 'Sabra16G0147100' => 'sbr', 'SalBow2G2957' => 'sbo', 'SalBow4G3320' => 'sbo', 'SalBow8G1894' => 'sbo', 'Sc07g0007950' => 'sci', 'Sc12g0001360' => 'sci', 'Sc13g0004330' => 'sci', 'Sc20g0005010' => 'sci', 'Sed0000361' => 'sed', 'Sed0001706' => 'sed', 'Sed0002422' => 'sed', 'Sed0004029' => 'sed', 'Sed0004602' => 'sed', 'Sed0004943' => 'sed', 'Sed0008646' => 'sed', 'Sed0023313' => 'sed', 'Sed0024843' => 'sed', 'SEGI_00081' => 'sgi', 'SEGI_00947' => 'sgi', 'SEGI_04046' => 'sgi', 'SEGI_06880' => 'sgi', 'SEGI_09736' => 'sgi', 'SEGI_12741' => 'sgi', 'SEGI_14530' => 'sgi', 'SEGI_20705' => 'sgi', 'SEGI_26088' => 'sgi', 'SEGI_28323' => 'sgi', 'SEGI_33343' => 'sgi', 'SGA_v2.0_scaffold126G33775' => 'sas', 'SGA_v2.0_scaffold2G01337' => 'sas', 'SGA_v2.0_scaffold38G15006' => 'sas', 'SGA_v2.0_scaffold39G15264' => 'sas', 'SGA_v2.0_scaffold453G51880' => 'sas', 'SHI12696' => 'shi', 'SMO367G1096' => 'smo', 'Solyc01g068630.3' => 'sly', 'Solyc05g011880.3' => 'sly', 'Solyc06g076300.3' => 'sly', 'Solyc09g010940.4' => 'sly', 'Solyc09g075890.3' => 'sly', 'Sopen01g030560' => 'spe', 'Sopen05g006630' => 'spe', 'Sopen06g032720' => 'spe', 'Sopen09g005660' => 'spe', 'Sopen09g030690' => 'spe', 'Sp4g14540' => 'spa', 'Sp4g20030' => 'spa', 'Sp5g01320' => 'spa', 'Sp6g21170' => 'spa', 'Sp6g21180' => 'spa', 'Sp6g21190' => 'spa', 'Sp6g40220' => 'spa', 'TAR362G0122' => 'tar', 'TAR362G1338' => 'tar', 'TAR369G0590' => 'tar', 'TAR371G0824' => 'tar', 'TAR622G1429' => 'tar', 'TAR623G0734' => 'tar', 'TAR625G0441' => 'tar', 'TAR629G0976' => 'tar', 'TAR633G1195' => 'tar', 'TAR636G2660' => 'tar', 'THA.LOC104799440' => 'tha', 'THA.LOC104800966' => 'tha', 'THA.LOC104806559' => 'tha', 'THA.LOC104810765' => 'tha', 'THA.LOC104816266' => 'tha', 'THA.LOC104817419' => 'tha', 'THA.LOC104827021' => 'tha', 'Thecc.01G327400' => 'tca', 'Thecc.04G229200' => 'tca', 'Thecc.05G037400' => 'tca', 'Thecc.09G318600' => 'tca', 'Thecc.09G318700' => 'tca', 'Thhalv10006238m.g' => 'esa', 'Thhalv10014321m.g' => 'esa', 'Thhalv10014335m.g' => 'esa', 'Thhalv10015826m.g' => 'esa', 'Thhalv10017107m.g' => 'esa', 'Thhalv10017180m.g' => 'esa', 'Thhalv10029339m.g' => 'esa', 'TPR.G1699' => 'tpr', 'TPR.G23609' => 'tpr', 'TPR.G3081' => 'tpr', 'TPR.G40397' => 'tpr', 'TPR.G5522' => 'tpr', 'TPR.G5618' => 'tpr', 'TPR.G5626' => 'tpr', 'TWI09G1632' => 'twi', 'TWI23G1230' => 'twi', 'TWI53G1064' => 'twi', 'TWI59G0751' => 'twi', 'TWI74G0947' => 'twi', 'TWI77G0337' => 'twi', 'TWI79G1254' => 'twi', 'unitig_0.g2341' => 'ugi', 'unitig_26.g10006' => 'ugi', 'unitig_26.g10008' => 'ugi', 'unitig_26.g9192' => 'ugi', 'vmacro14547' => 'vma', 'vmacro15333' => 'vma', 'vmacro18743' => 'vma', 'vmacro20166' => 'vma', 'VMungo0331G0523' => 'vmu', 'VMungo0331G1202' => 'vmu', 'VMungo0720G1228' => 'vmu', 'VMungo0720G1514' => 'vmu', 'VMungo1080G0169' => 'vmu', 'VMungo1127G1475' => 'vmu', 'VMungo1383G1208' => 'vmu', 'VMungo1383G1698' => 'vmu', 'Zm00001eb012270' => 'zma', 'Zm00001eb054100' => 'zma', 'Zm00001eb063350' => 'zma', 'Zm00001eb328560' => 'zma', 'Zm00001eb342820' => 'zma', 'Zm00001eb362210' => 'zma', 'Zm00001eb397730' => 'zma', 'Zm00001eb399750' => 'zma' ) $gf_id = 'HOM05D000959' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000959' ) $data_identifier = 'HOM05D000959' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 5, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 5, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 10, 'mbi' => (int) 3, 'mco' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 2, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 3, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 11, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399750' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000959', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '622', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p07100' => 'bna', 'A03p11720' => 'bna', 'A05p08300' => 'bna', 'A05p13380' => 'bna', 'A09p54130' => 'bna', 'A10p16690' => 'bna', 'A10p16700' => 'bna', 'A10p33390' => 'bna', 'Aa31LG10G16020' => 'aar', 'Aa31LG1G11810' => 'aar', 'Aa31LG1G11830' => 'aar', 'Aa31LG1G22510' => 'aar', 'Aa31LG5G4890' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5793' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2310' => 'aag', 'Actinidia08499' => 'ach', 'Actinidia11262' => 'ach', 'Actinidia23926' => 'ach', 'Actinidia34420' => 'ach', 'Actinidia36970' => 'ach', 'Ah.02g111220' => 'amhyb', 'Ah.15g097750' => 'amhyb', 'AL4G27500' => 'aly', 'AL6G11470' => 'aly', 'AL8G35950' => 'aly', 'AL8G35960' => 'aly', 'AL8G35970' => 'aly', 'Aqoxy1G00912' => 'aox', 'Aqoxy2G02253' => 'aox', 'Aqoxy2G02411' => 'aox', 'Aqoxy5G00485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BZ66YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K8ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM4FUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6BF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HFV7XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25JBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0YNNV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MAKK6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P70IT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP2Z6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V61LZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YWP64R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3S9AI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7PGHH' => 'arhy', 'AT2G32150' => 'ath', 'AT3G62040' => 'ath', 'AT5G02230' => 'ath', 'AT5G59480' => 'ath', 'AT5G59490' => 'ath', 'ATR0332G060' => 'atr', 'ATR0559G190' => 'atr', 'ATR0693G294' => 'atr', 'Atru.chr3.3975' => 'acertr', 'Atru.chr3.3976' => 'acertr', 'Atru.chr3.3977' => 'acertr', 'Atru.chr4.2498' => 'acertr', 'Atru.chr5.838' => 'acertr', 'Atru.chr8.1990' => 'acertr', 'Atru.chr8.1991' => 'acertr', 'Atru.chr8.1992' => 'acertr', 'AUR62001759' => 'cqu', 'AUR62009545' => 'cqu', 'AUR62010474' => 'cqu', 'AUR62025820' => 'cqu', 'AUR62030422' => 'cqu', 'AUR62033605' => 'cqu', 'AUR62038615' => 'cqu', 'AUR62041347' => 'cqu', 'BcaB01g04574' => 'bca', 'BcaB02g09263' => 'bca', 'BcaB02g10453' => 'bca', 'BcaB05g22513' => 'bca', 'BcaB08g36253' => 'bca', 'BcaB08g36254' => 'bca', 'BcaC01g06519' => 'bca', 'BcaC02g11889' => 'bca', 'BcaC03g14010' => 'bca', 'BcaC03g18439' => 'bca', 'BcaC04g19765' => 'bca', 'BcaC09g48432' => 'bca', 'BcaNung07302' => 'bca', 'BolC2t06040H' => 'bol', 'BolC2t07346H' => 'bol', 'BolC3t13817H' => 'bol', 'BolC4t22625H' => 'bol', 'BolC4t23297H' => 'bol', 'BolC8t51278H' => 'bol', 'BolC9t58050H' => 'bol', 'BolC9t58051H' => 'bol', 'BolC9t60163H' => 'bol', 'BraA02t04712Z' => 'bra', 'BraA02t05791Z' => 'bra', 'BraA03t10483Z' => 'bra', 'BraA05t19795Z' => 'bra', 'BraA05t20276Z' => 'bra', 'BraA09t40827Z' => 'bra', 'BraA10t43750Z' => 'bra', 'BraA10t43751Z' => 'bra', 'BraA10t45370Z' => 'bra', 'C02p00400' => 'bna', 'C02p12460' => 'bna', 'C03p13680' => 'bna', 'C04p10270' => 'bna', 'C04p17500' => 'bna', 'C08p37010' => 'bna', 'C09p51880' => 'bna', 'C09p51890' => 'bna', 'C09p74300' => 'bna', 'CAN.G179.26' => 'can', 'CAN.G3384.1' => 'can', 'CAN.G394.68' => 'can', 'CAN.G907.13' => 'can', 'CANSAT11G0012' => 'cansat', 'CANSAT25G1586' => 'cansat', 'CANSAT35G0735' => 'cansat', 'CANSAT54G0556' => 'cansat', 'CANSAT64G0356' => 'cansat', 'CANSAT78G2042' => 'cansat', 'CARHR125920' => 'chi', 'CARHR131910' => 'chi', 'CARHR172390' => 'chi', 'CARHR211140' => 'chi', 'CARHR285850' => 'chi', 'CARHR285860' => 'chi', 'Carub.0004s1347' => 'cru', 'Carub.0004s1960' => 'cru', 'Carub.0005s2880' => 'cru', 'Carub.0006s0107' => 'cru', 'Carub.0008s2015' => 'cru', 'Carub.0008s2016' => 'cru', 'Carub.0008s2017' => 'cru', 'Ca_01315_v3' => 'car', 'Ca_05063_v3' => 'car', 'Ca_10231_v3' => 'car', 'Ca_10913_v3' => 'car', 'Ca_19156_v3' => 'car', 'Ca_23644_v3' => 'car', 'Ca_26735_v3' => 'car', 'Cc01_g13130' => 'ccan', 'Cc02_g21690' => 'ccan', 'Cc03_g03600' => 'ccan', 'Cc06_g02510' => 'ccan', 'CDE02G1265' => 'cde', 'CDE05G0415' => 'cde', 'CDE08G1082' => 'cde', 'Cfa005780' => 'cfa', 'Cfa011522' => 'cfa', 'Cfa011523' => 'cfa', 'Cfa015627' => 'cfa', 'Cfa017359' => 'cfa', 'Ciclev10005687m.g' => 'ccl', 'Ciclev10012173m.g' => 'ccl', 'Ciclev10021621m.g' => 'ccl', 'Ciclev10028968m.g' => 'ccl', 'Ciclev10029907m.g' => 'ccl', 'CiPaw.01G164800' => 'cil', 'CiPaw.07G083700' => 'cil', 'CiPaw.07G127000' => 'cil', 'CiPaw.07G136900' => 'cil', 'CiPaw.08G081700' => 'cil', 'CiPaw.09G194600' => 'cil', 'CiPaw.10G146500' => 'cil', 'CiPaw.13G091500' => 'cil', 'CiPaw.13G091600' => 'cil', 'ClCG00G003390' => 'cla', 'ClCG01G007220' => 'cla', 'ClCG03G001370' => 'cla', 'ClCG04G008100' => 'cla', 'ClCG06G006110' => 'cla', 'ClCG06G006130' => 'cla', 'ClCG10G021210' => 'cla', 'COL.COLO4_07648' => 'col', 'COL.COLO4_07650' => 'col', 'COL.COLO4_07651' => 'col', 'COL.COLO4_14780' => 'col', 'COL.COLO4_18546' => 'col', 'COL.COLO4_18547' => 'col', 'COL.COLO4_23103' => 'col', 'COL.COLO4_30419' => 'col', 'COL.COLO4_34232' => 'col', 'Cpa.g.sc169.20' => 'cpa', 'Cpa.g.sc57.45' => 'cpa', 'Cpa.g.sc58.124' => 'cpa', 'Cpa.g.sc58.125' => 'cpa', 'Cpa.g.sc81.118' => 'cpa', 'Cpa.g.sc81.119' => 'cpa', 'Cre12.g524700' => 'cre', 'CsaV3_1G034430' => 'csa', 'CsaV3_1G034440' => 'csa', 'CsaV3_1G034450' => 'csa', 'CsaV3_3G034830' => 'csa', 'CsaV3_4G025090' => 'csa', 'CsaV3_5G018660' => 'csa', 'CsaV3_6G038160' => 'csa', 'CSS0003447' => 'camsi', 'CSS0017840' => 'camsi', 'CSS0019260' => 'camsi', 'CSS0040375' => 'camsi', 'CSS0042533' => 'camsi', 'DCAR_005960' => 'dca', 'DCAR_012104' => 'dca', 'DCAR_012105' => 'dca', 'DCAR_012293' => 'dca', 'DCAR_015632' => 'dca', 'DCAR_024602' => 'dca', 'DCAR_028752' => 'dca', 'Dinv06261' => 'din', 'Dinv13982' => 'din', 'Dinv17029' => 'din', 'Dinv18463' => 'din', 'Dinv33181' => 'din', 'Dinv35585' => 'din', 'Dinv37161' => 'din', 'Dinv42977' => 'din', 'Dinv43122' => 'din', 'Dinv44517' => 'din', 'Duzib093G0256' => 'dzi', 'Duzib106G1254' => 'dzi', 'Duzib128G1789' => 'dzi', 'Duzib133G0633' => 'dzi', 'Duzib138G0510' => 'dzi', 'Duzib150G1084' => 'dzi', 'Duzib168G0488' => 'dzi', 'Duzib168G1523' => 'dzi', 'Duzib170G0133' => 'dzi', 'ECA234G1433' => 'eca', 'ECA236G1432' => 'eca', 'ECA236G2256' => 'eca', 'ECA236G2365' => 'eca', 'ECA236G4830' => 'eca', 'ECA248G1505' => 'eca', 'EL10Ac3g06431' => 'bvu', 'EL10Ac5g12577' => 'bvu', 'EL10Ac6g13533' => 'bvu', 'EL10Ac7g16045' => 'bvu', 'Eucgr.A01281' => 'egr', 'Eucgr.B02326' => 'egr', 'Eucgr.H03532' => 'egr', 'Eucgr.K00553' => 'egr', 'Eucgr.K03116' => 'egr', 'FAN02G3963' => 'fan', 'FAN05G0438' => 'fan', 'FAN09G2434' => 'fan', 'FAN12G3984' => 'fan', 'FAN14G0798' => 'fan', 'FAN17G0652' => 'fan', 'FAN19G1988' => 'fan', 'FAN22G0632' => 'fan', 'FAN23G0387' => 'fan', 'FAN26G1323' => 'fan', 'FAN28G0666' => 'fan', 'FvH4_1g26080' => 'fve', 'FvH4_3g36780' => 'fve', 'FvH4_4g15270' => 'fve', 'FvH4_6g13490' => 'fve', 'Glyma.01G098700' => 'gma', 'Glyma.03G065900' => 'gma', 'Glyma.03G073754' => 'gma', 'Glyma.03G073758' => 'gma', 'Glyma.03G083200' => 'gma', 'Glyma.03G225500' => 'gma', 'Glyma.05G037766' => 'gma', 'Glyma.07G133500' => 'gma', 'Glyma.10G139400' => 'gma', 'Glyma.10G248900' => 'gma', 'Glyma.11G137800' => 'gma', 'Glyma.12G061300' => 'gma', 'Glyma.13G337900' => 'gma', 'Glyma.15G036600' => 'gma', 'Glyma.18G182800' => 'gma', 'Glyma.19G222500' => 'gma', 'Glyma.20G144800' => 'gma', 'Gohir.A01G222000' => 'ghi', 'Gohir.A03G044000' => 'ghi', 'Gohir.A03G044100' => 'ghi', 'Gohir.A04G083100' => 'ghi', 'Gohir.A07G127200' => 'ghi', 'Gohir.A07G132400' => 'ghi', 'Gohir.A08G000700' => 'ghi', 'Gohir.A11G327300' => 'ghi', 'Gohir.D01G211500' => 'ghi', 'Gohir.D03G123400' => 'ghi', 'Gohir.D03G123500' => 'ghi', 'Gohir.D04G121800' => 'ghi', 'Gohir.D07G131500' => 'ghi', 'Gohir.D07G136600' => 'ghi', 'Gohir.D08G011600' => 'ghi', 'Gohir.D11G346200' => 'ghi', 'Gorai.001G142800' => 'gra', 'Gorai.001G148700' => 'gra', 'Gorai.002G257300' => 'gra', 'Gorai.003G130000' => 'gra', 'Gorai.003G130100' => 'gra', 'Gorai.004G005300' => 'gra', 'Gorai.007G376500' => 'gra', 'Gorai.012G104700' => 'gra', 'GSVIVG01017946001' => 'vvi', 'GSVIVG01024928001' => 'vvi', 'GSVIVG01028227001' => 'vvi', 'GSVIVG01034151001' => 'vvi', 'HanXRQChr05g0135031' => 'han', 'HanXRQChr05g0135041' => 'han', 'HanXRQChr05g0140021' => 'han', 'HanXRQChr06g0178981' => 'han', 'HanXRQChr07g0188251' => 'han', 'HanXRQChr08g0235311' => 'han', 'HanXRQChr09g0271011' => 'han', 'HanXRQChr10g0293321' => 'han', 'HanXRQChr13g0388171' => 'han', 'Haze_00916' => 'cav', 'Haze_05063' => 'cav', 'Haze_20814' => 'cav', 'Haze_24128' => 'cav', 'Hma1.2p1_0745F.1_g212010' => 'hma', 'Hma1.2p1_0757F.1_g213260' => 'hma', 'Hma1.2p1_0936F.1_g238840' => 'hma', 'Hma1.2p1_1735F.1_g299890' => 'hma', 'Hma1.2p1_1861F.1_g305685' => 'hma', 'HPP92_003397' => 'vpl', 'HPP92_012597' => 'vpl', 'HPP92_015520' => 'vpl', 'HPP92_015539' => 'vpl', 'HPP92_020373' => 'vpl', 'Hund04938' => 'sun', 'Hund10677' => 'sun', 'Hund11033' => 'sun', 'Hund12155' => 'sun', 'Lalb_Chr01g0022551' => 'lal', 'Lalb_Chr03g0042341' => 'lal', 'Lalb_Chr07g0192931' => 'lal', 'Lalb_Chr12g0209551' => 'lal', 'Lalb_Chr19g0125251' => 'lal', 'Lalb_Chr19g0137891' => 'lal', 'Lalb_Chr21g0304641' => 'lal', 'Lalb_Chr21g0309881' => 'lal', 'Lj1A5T12' => 'lonja', 'Lj1C148G10' => 'lonja', 'Lj2A93T83' => 'lonja', 'Lj3A738G68' => 'lonja', 'Lj3C966T1' => 'lonja', 'Lj3g0018958' => 'lja', 'Lj3g0021831' => 'lja', 'Lj3g0025443' => 'lja', 'Lj4g0026809' => 'lja', 'Lj5g0012558' => 'lja', 'Lj5g0021586' => 'lja', 'Lsat_1_v5_gn_5_156840' => 'lsa', 'Lsat_1_v5_gn_8_73460' => 'lsa', 'Lsat_1_v5_gn_8_73481' => 'lsa', 'Lsat_1_v5_gn_9_31601' => 'lsa', 'Lsat_1_v5_gn_9_77320' => 'lsa', 'Manes.01G171300' => 'mes', 'Manes.01G171400' => 'mes', 'Manes.01G236100' => 'mes', 'Manes.02G130500' => 'mes', 'Manes.02G130600' => 'mes', 'Manes.03G180200' => 'mes', 'Manes.05G007000' => 'mes', 'Manes.08G084400' => 'mes', 'Manes.09G092600' => 'mes', 'Manes.15G027900' => 'mes', 'MBI04_g40948_MAGBIO' => 'mbi', 'MBI14_g12123_MAGBIO' => 'mbi', 'MBI18_g28915_MAGBIO' => 'mbi', 'MCO09G053' => 'mco', 'MCO11G782' => 'mco', 'MCO15G215' => 'mco', 'MD03G1088500' => 'mdo', 'MD03G1088600' => 'mdo', 'MD04G1130800' => 'mdo', 'MD09G1291700' => 'mdo', 'MD11G1097500' => 'mdo', 'MD11G1097600' => 'mdo', 'MD12G1143900' => 'mdo', 'MD13G1191400' => 'mdo', 'MD16G1191500' => 'mdo', 'Medtr1g085570' => 'mtr', 'Medtr1g104610' => 'mtr', 'Medtr2g097520' => 'mtr', 'Medtr4g021800' => 'mtr', 'Medtr4g021825' => 'mtr', 'Medtr4g064270' => 'mtr', 'Medtr4g064380' => 'mtr', 'Medtr7g062150' => 'mtr', 'MELO3C003138.2' => 'cme', 'MELO3C005187.2' => 'cme', 'MELO3C009252.2' => 'cme', 'MELO3C014481.2' => 'cme', 'MELO3C020616.2' => 'cme', 'MELO3C020617.2' => 'cme', 'MELO3C020618.2' => 'cme', 'Migut.G00328' => 'egut', 'Migut.J00320' => 'egut', 'Migut.L01000' => 'egut', 'Migut.L01953' => 'egut', 'MSTRG.10253' => 'ama', 'MSTRG.19077' => 'ama', 'MSTRG.26780' => 'ama', 'MSTRG.4023' => 'ama', 'MSTRG.5655' => 'ama', 'MSTRG.9992' => 'ama', 'Nitab4.5_0000043g0310' => 'nta', 'Nitab4.5_0000463g0080' => 'nta', 'Nitab4.5_0000705g0170' => 'nta', 'Nitab4.5_0001326g0060' => 'nta', 'Nitab4.5_0001628g0030' => 'nta', 'Nitab4.5_0002103g0110' => 'nta', 'Nitab4.5_0002946g0030' => 'nta', 'Nitab4.5_0004639g0030' => 'nta', 'Nn2g11149' => 'nnu', 'Nn2g13389' => 'nnu', 'Nn4g25326' => 'nnu', 'Nn4g26290' => 'nnu', 'Nn5g29865' => 'nnu', 'Oeu004163.1' => 'oeu', 'Oeu006901.1' => 'oeu', 'Oeu010096.1' => 'oeu', 'Oeu024340.1' => 'oeu', 'Oeu048369.1' => 'oeu', 'Os01g0973000' => 'osa', 'Os03g0273800' => 'osa', 'Os03g0701200' => 'osa', 'Os03g0834050' => 'osa', 'Os07g0634400' => 'osa', 'Peaxi162Scf00092g01414' => 'pax', 'Peaxi162Scf00165g00818' => 'pax', 'Peaxi162Scf00309g00516' => 'pax', 'Peaxi162Scf00774g00218' => 'pax', 'PGR004G1824' => 'pgr', 'PGR004G2606' => 'pgr', 'PGR031G2716' => 'pgr', 'PGR102G2460' => 'pgr', 'PGR142G2599' => 'pgr', 'PGSC0003DMG400000843' => 'stu', 'PGSC0003DMG400008829' => 'stu', 'PGSC0003DMG400030418' => 'stu', 'PGSC0003DMG400031834' => 'stu', 'PGSC0003DMG401028300' => 'stu', 'PGSC0003DMG402028300' => 'stu', 'Phvul.001G219300' => 'pvu', 'Phvul.007G056000' => 'pvu', 'Phvul.007G208000' => 'pvu', 'Phvul.008G119500' => 'pvu', 'Phvul.010G011200' => 'pvu', 'Phvul.010G014800' => 'pvu', 'Phvul.011G062900' => 'pvu', 'Phvul.L007043' => 'pvu', 'Potri.001G242300' => 'ptr', 'Potri.002G185300' => 'ptr', 'Potri.006G086900' => 'ptr', 'Potri.008G151700' => 'ptr', 'Potri.009G033500' => 'ptr', 'Potri.010G089300' => 'ptr', 'Potri.014G110800' => 'ptr', 'Pp3c27_8130' => 'ppa', 'Pp3c6_27410' => 'ppa', 'PRCOL_00001659' => 'pco', 'PRCOL_00001927' => 'pco', 'PRCOL_00003649' => 'pco', 'Prupe.1G011600' => 'ppe', 'Prupe.3G000800' => 'ppe', 'Prupe.3G001100' => 'ppe', 'Prupe.6G072700' => 'ppe', 'Prupe.6G072800' => 'ppe', 'Prupe.6G257300' => 'ppe', 'Prupe.8G033000' => 'ppe', 'Psat0s2633g0080' => 'psa', 'Psat0s3396g0080' => 'psa', 'Psat0s3396g0200' => 'psa', 'Psat3g139080' => 'psa', 'Psat5g285080' => 'psa', 'Psat6g157760' => 'psa', 'Psat6g208440' => 'psa', 'Psat7g215320' => 'psa', 'Psat7g215400' => 'psa', 'Psat7g235600' => 'psa', 'Psat7g235760' => 'psa', 'PSO063G4603' => 'pso', 'PSO210G0182' => 'pso', 'PSO210G0196' => 'pso', 'PSO339G0394' => 'pso', 'PSO339G4127' => 'pso', 'PSO513G0064' => 'pso', 'PSO761G0079' => 'pso', 'QL01p031003' => 'qlo', 'QL01p031078' => 'qlo', 'QL06p003004' => 'qlo', 'QL07p048731' => 'qlo', 'QL09p037427' => 'qlo', 'RcHm_v2.0_Chr3g0466361' => 'rch', 'RcHm_v2.0_Chr3g0485571' => 'rch', 'RcHm_v2.0_Chr4g0416551' => 'rch', 'RcHm_v2.0_Chr5g0065831' => 'rch', 'Rhsim01G0230500' => 'rsi', 'Rhsim05G0194000' => 'rsi', 'Rhsim08G0250400' => 'rsi', 'Sabra02G0131000' => 'sbr', 'Sabra06G0066300' => 'sbr', 'Sabra08G0115500' => 'sbr', 'Sabra09G0023900' => 'sbr', 'Sabra10G0054000' => 'sbr', 'Sabra14G0081500' => 'sbr', 'Sabra16G0147100' => 'sbr', 'SalBow2G2957' => 'sbo', 'SalBow4G3320' => 'sbo', 'SalBow8G1894' => 'sbo', 'Sc07g0007950' => 'sci', 'Sc12g0001360' => 'sci', 'Sc13g0004330' => 'sci', 'Sc20g0005010' => 'sci', 'Sed0000361' => 'sed', 'Sed0001706' => 'sed', 'Sed0002422' => 'sed', 'Sed0004029' => 'sed', 'Sed0004602' => 'sed', 'Sed0004943' => 'sed', 'Sed0008646' => 'sed', 'Sed0023313' => 'sed', 'Sed0024843' => 'sed', 'SEGI_00081' => 'sgi', 'SEGI_00947' => 'sgi', 'SEGI_04046' => 'sgi', 'SEGI_06880' => 'sgi', 'SEGI_09736' => 'sgi', 'SEGI_12741' => 'sgi', 'SEGI_14530' => 'sgi', 'SEGI_20705' => 'sgi', 'SEGI_26088' => 'sgi', 'SEGI_28323' => 'sgi', 'SEGI_33343' => 'sgi', 'SGA_v2.0_scaffold126G33775' => 'sas', 'SGA_v2.0_scaffold2G01337' => 'sas', 'SGA_v2.0_scaffold38G15006' => 'sas', 'SGA_v2.0_scaffold39G15264' => 'sas', 'SGA_v2.0_scaffold453G51880' => 'sas', 'SHI12696' => 'shi', 'SMO367G1096' => 'smo', 'Solyc01g068630.3' => 'sly', 'Solyc05g011880.3' => 'sly', 'Solyc06g076300.3' => 'sly', 'Solyc09g010940.4' => 'sly', 'Solyc09g075890.3' => 'sly', 'Sopen01g030560' => 'spe', 'Sopen05g006630' => 'spe', 'Sopen06g032720' => 'spe', 'Sopen09g005660' => 'spe', 'Sopen09g030690' => 'spe', 'Sp4g14540' => 'spa', 'Sp4g20030' => 'spa', 'Sp5g01320' => 'spa', 'Sp6g21170' => 'spa', 'Sp6g21180' => 'spa', 'Sp6g21190' => 'spa', 'Sp6g40220' => 'spa', 'TAR362G0122' => 'tar', 'TAR362G1338' => 'tar', 'TAR369G0590' => 'tar', 'TAR371G0824' => 'tar', 'TAR622G1429' => 'tar', 'TAR623G0734' => 'tar', 'TAR625G0441' => 'tar', 'TAR629G0976' => 'tar', 'TAR633G1195' => 'tar', 'TAR636G2660' => 'tar', 'THA.LOC104799440' => 'tha', 'THA.LOC104800966' => 'tha', 'THA.LOC104806559' => 'tha', 'THA.LOC104810765' => 'tha', 'THA.LOC104816266' => 'tha', 'THA.LOC104817419' => 'tha', 'THA.LOC104827021' => 'tha', 'Thecc.01G327400' => 'tca', 'Thecc.04G229200' => 'tca', 'Thecc.05G037400' => 'tca', 'Thecc.09G318600' => 'tca', 'Thecc.09G318700' => 'tca', 'Thhalv10006238m.g' => 'esa', 'Thhalv10014321m.g' => 'esa', 'Thhalv10014335m.g' => 'esa', 'Thhalv10015826m.g' => 'esa', 'Thhalv10017107m.g' => 'esa', 'Thhalv10017180m.g' => 'esa', 'Thhalv10029339m.g' => 'esa', 'TPR.G1699' => 'tpr', 'TPR.G23609' => 'tpr', 'TPR.G3081' => 'tpr', 'TPR.G40397' => 'tpr', 'TPR.G5522' => 'tpr', 'TPR.G5618' => 'tpr', 'TPR.G5626' => 'tpr', 'TWI09G1632' => 'twi', 'TWI23G1230' => 'twi', 'TWI53G1064' => 'twi', 'TWI59G0751' => 'twi', 'TWI74G0947' => 'twi', 'TWI77G0337' => 'twi', 'TWI79G1254' => 'twi', 'unitig_0.g2341' => 'ugi', 'unitig_26.g10006' => 'ugi', 'unitig_26.g10008' => 'ugi', 'unitig_26.g9192' => 'ugi', 'vmacro14547' => 'vma', 'vmacro15333' => 'vma', 'vmacro18743' => 'vma', 'vmacro20166' => 'vma', 'VMungo0331G0523' => 'vmu', 'VMungo0331G1202' => 'vmu', 'VMungo0720G1228' => 'vmu', 'VMungo0720G1514' => 'vmu', 'VMungo1080G0169' => 'vmu', 'VMungo1127G1475' => 'vmu', 'VMungo1383G1208' => 'vmu', 'VMungo1383G1698' => 'vmu', 'Zm00001eb012270' => 'zma', 'Zm00001eb054100' => 'zma', 'Zm00001eb063350' => 'zma', 'Zm00001eb328560' => 'zma', 'Zm00001eb342820' => 'zma', 'Zm00001eb362210' => 'zma', 'Zm00001eb397730' => 'zma', 'Zm00001eb399750' => 'zma' ), 'gf_id' => 'HOM05D000959', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000959' ), 'data_identifier' => 'HOM05D000959', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000959', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '622', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p07100' => 'bna', 'A03p11720' => 'bna', 'A05p08300' => 'bna', 'A05p13380' => 'bna', 'A09p54130' => 'bna', 'A10p16690' => 'bna', 'A10p16700' => 'bna', 'A10p33390' => 'bna', 'Aa31LG10G16020' => 'aar', 'Aa31LG1G11810' => 'aar', 'Aa31LG1G11830' => 'aar', 'Aa31LG1G22510' => 'aar', 'Aa31LG5G4890' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5793' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2310' => 'aag', 'Actinidia08499' => 'ach', 'Actinidia11262' => 'ach', 'Actinidia23926' => 'ach', 'Actinidia34420' => 'ach', 'Actinidia36970' => 'ach', 'Ah.02g111220' => 'amhyb', 'Ah.15g097750' => 'amhyb', 'AL4G27500' => 'aly', 'AL6G11470' => 'aly', 'AL8G35950' => 'aly', 'AL8G35960' => 'aly', 'AL8G35970' => 'aly', 'Aqoxy1G00912' => 'aox', 'Aqoxy2G02253' => 'aox', 'Aqoxy2G02411' => 'aox', 'Aqoxy5G00485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BZ66YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K8ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM4FUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6BF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HFV7XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25JBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0YNNV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MAKK6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P70IT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP2Z6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V61LZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YWP64R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3S9AI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7PGHH' => 'arhy', 'AT2G32150' => 'ath', 'AT3G62040' => 'ath', 'AT5G02230' => 'ath', 'AT5G59480' => 'ath', 'AT5G59490' => 'ath', 'ATR0332G060' => 'atr', 'ATR0559G190' => 'atr', 'ATR0693G294' => 'atr', 'Atru.chr3.3975' => 'acertr', 'Atru.chr3.3976' => 'acertr', 'Atru.chr3.3977' => 'acertr', 'Atru.chr4.2498' => 'acertr', 'Atru.chr5.838' => 'acertr', 'Atru.chr8.1990' => 'acertr', 'Atru.chr8.1991' => 'acertr', 'Atru.chr8.1992' => 'acertr', 'AUR62001759' => 'cqu', 'AUR62009545' => 'cqu', 'AUR62010474' => 'cqu', 'AUR62025820' => 'cqu', 'AUR62030422' => 'cqu', 'AUR62033605' => 'cqu', 'AUR62038615' => 'cqu', 'AUR62041347' => 'cqu', 'BcaB01g04574' => 'bca', 'BcaB02g09263' => 'bca', 'BcaB02g10453' => 'bca', 'BcaB05g22513' => 'bca', 'BcaB08g36253' => 'bca', 'BcaB08g36254' => 'bca', 'BcaC01g06519' => 'bca', 'BcaC02g11889' => 'bca', 'BcaC03g14010' => 'bca', 'BcaC03g18439' => 'bca', 'BcaC04g19765' => 'bca', 'BcaC09g48432' => 'bca', 'BcaNung07302' => 'bca', 'BolC2t06040H' => 'bol', 'BolC2t07346H' => 'bol', 'BolC3t13817H' => 'bol', 'BolC4t22625H' => 'bol', 'BolC4t23297H' => 'bol', 'BolC8t51278H' => 'bol', 'BolC9t58050H' => 'bol', 'BolC9t58051H' => 'bol', 'BolC9t60163H' => 'bol', 'BraA02t04712Z' => 'bra', 'BraA02t05791Z' => 'bra', 'BraA03t10483Z' => 'bra', 'BraA05t19795Z' => 'bra', 'BraA05t20276Z' => 'bra', 'BraA09t40827Z' => 'bra', 'BraA10t43750Z' => 'bra', 'BraA10t43751Z' => 'bra', 'BraA10t45370Z' => 'bra', 'C02p00400' => 'bna', 'C02p12460' => 'bna', 'C03p13680' => 'bna', 'C04p10270' => 'bna', 'C04p17500' => 'bna', 'C08p37010' => 'bna', 'C09p51880' => 'bna', 'C09p51890' => 'bna', 'C09p74300' => 'bna', 'CAN.G179.26' => 'can', 'CAN.G3384.1' => 'can', 'CAN.G394.68' => 'can', 'CAN.G907.13' => 'can', 'CANSAT11G0012' => 'cansat', 'CANSAT25G1586' => 'cansat', 'CANSAT35G0735' => 'cansat', 'CANSAT54G0556' => 'cansat', 'CANSAT64G0356' => 'cansat', 'CANSAT78G2042' => 'cansat', 'CARHR125920' => 'chi', 'CARHR131910' => 'chi', 'CARHR172390' => 'chi', 'CARHR211140' => 'chi', 'CARHR285850' => 'chi', 'CARHR285860' => 'chi', 'Carub.0004s1347' => 'cru', 'Carub.0004s1960' => 'cru', 'Carub.0005s2880' => 'cru', 'Carub.0006s0107' => 'cru', 'Carub.0008s2015' => 'cru', 'Carub.0008s2016' => 'cru', 'Carub.0008s2017' => 'cru', 'Ca_01315_v3' => 'car', 'Ca_05063_v3' => 'car', 'Ca_10231_v3' => 'car', 'Ca_10913_v3' => 'car', 'Ca_19156_v3' => 'car', 'Ca_23644_v3' => 'car', 'Ca_26735_v3' => 'car', 'Cc01_g13130' => 'ccan', 'Cc02_g21690' => 'ccan', 'Cc03_g03600' => 'ccan', 'Cc06_g02510' => 'ccan', 'CDE02G1265' => 'cde', 'CDE05G0415' => 'cde', 'CDE08G1082' => 'cde', 'Cfa005780' => 'cfa', 'Cfa011522' => 'cfa', 'Cfa011523' => 'cfa', 'Cfa015627' => 'cfa', 'Cfa017359' => 'cfa', 'Ciclev10005687m.g' => 'ccl', 'Ciclev10012173m.g' => 'ccl', 'Ciclev10021621m.g' => 'ccl', 'Ciclev10028968m.g' => 'ccl', 'Ciclev10029907m.g' => 'ccl', 'CiPaw.01G164800' => 'cil', 'CiPaw.07G083700' => 'cil', 'CiPaw.07G127000' => 'cil', 'CiPaw.07G136900' => 'cil', 'CiPaw.08G081700' => 'cil', 'CiPaw.09G194600' => 'cil', 'CiPaw.10G146500' => 'cil', 'CiPaw.13G091500' => 'cil', 'CiPaw.13G091600' => 'cil', 'ClCG00G003390' => 'cla', 'ClCG01G007220' => 'cla', 'ClCG03G001370' => 'cla', 'ClCG04G008100' => 'cla', 'ClCG06G006110' => 'cla', 'ClCG06G006130' => 'cla', 'ClCG10G021210' => 'cla', 'COL.COLO4_07648' => 'col', 'COL.COLO4_07650' => 'col', 'COL.COLO4_07651' => 'col', 'COL.COLO4_14780' => 'col', 'COL.COLO4_18546' => 'col', 'COL.COLO4_18547' => 'col', 'COL.COLO4_23103' => 'col', 'COL.COLO4_30419' => 'col', 'COL.COLO4_34232' => 'col', 'Cpa.g.sc169.20' => 'cpa', 'Cpa.g.sc57.45' => 'cpa', 'Cpa.g.sc58.124' => 'cpa', 'Cpa.g.sc58.125' => 'cpa', 'Cpa.g.sc81.118' => 'cpa', 'Cpa.g.sc81.119' => 'cpa', 'Cre12.g524700' => 'cre', 'CsaV3_1G034430' => 'csa', 'CsaV3_1G034440' => 'csa', 'CsaV3_1G034450' => 'csa', 'CsaV3_3G034830' => 'csa', 'CsaV3_4G025090' => 'csa', 'CsaV3_5G018660' => 'csa', 'CsaV3_6G038160' => 'csa', 'CSS0003447' => 'camsi', 'CSS0017840' => 'camsi', 'CSS0019260' => 'camsi', 'CSS0040375' => 'camsi', 'CSS0042533' => 'camsi', 'DCAR_005960' => 'dca', 'DCAR_012104' => 'dca', 'DCAR_012105' => 'dca', 'DCAR_012293' => 'dca', 'DCAR_015632' => 'dca', 'DCAR_024602' => 'dca', 'DCAR_028752' => 'dca', 'Dinv06261' => 'din', 'Dinv13982' => 'din', 'Dinv17029' => 'din', 'Dinv18463' => 'din', 'Dinv33181' => 'din', 'Dinv35585' => 'din', 'Dinv37161' => 'din', 'Dinv42977' => 'din', 'Dinv43122' => 'din', 'Dinv44517' => 'din', 'Duzib093G0256' => 'dzi', 'Duzib106G1254' => 'dzi', 'Duzib128G1789' => 'dzi', 'Duzib133G0633' => 'dzi', 'Duzib138G0510' => 'dzi', 'Duzib150G1084' => 'dzi', 'Duzib168G0488' => 'dzi', 'Duzib168G1523' => 'dzi', 'Duzib170G0133' => 'dzi', 'ECA234G1433' => 'eca', 'ECA236G1432' => 'eca', 'ECA236G2256' => 'eca', 'ECA236G2365' => 'eca', 'ECA236G4830' => 'eca', 'ECA248G1505' => 'eca', 'EL10Ac3g06431' => 'bvu', 'EL10Ac5g12577' => 'bvu', 'EL10Ac6g13533' => 'bvu', 'EL10Ac7g16045' => 'bvu', 'Eucgr.A01281' => 'egr', 'Eucgr.B02326' => 'egr', 'Eucgr.H03532' => 'egr', 'Eucgr.K00553' => 'egr', 'Eucgr.K03116' => 'egr', 'FAN02G3963' => 'fan', 'FAN05G0438' => 'fan', 'FAN09G2434' => 'fan', 'FAN12G3984' => 'fan', 'FAN14G0798' => 'fan', 'FAN17G0652' => 'fan', 'FAN19G1988' => 'fan', 'FAN22G0632' => 'fan', 'FAN23G0387' => 'fan', 'FAN26G1323' => 'fan', 'FAN28G0666' => 'fan', 'FvH4_1g26080' => 'fve', 'FvH4_3g36780' => 'fve', 'FvH4_4g15270' => 'fve', 'FvH4_6g13490' => 'fve', 'Glyma.01G098700' => 'gma', 'Glyma.03G065900' => 'gma', 'Glyma.03G073754' => 'gma', 'Glyma.03G073758' => 'gma', 'Glyma.03G083200' => 'gma', 'Glyma.03G225500' => 'gma', 'Glyma.05G037766' => 'gma', 'Glyma.07G133500' => 'gma', 'Glyma.10G139400' => 'gma', 'Glyma.10G248900' => 'gma', 'Glyma.11G137800' => 'gma', 'Glyma.12G061300' => 'gma', 'Glyma.13G337900' => 'gma', 'Glyma.15G036600' => 'gma', 'Glyma.18G182800' => 'gma', 'Glyma.19G222500' => 'gma', 'Glyma.20G144800' => 'gma', 'Gohir.A01G222000' => 'ghi', 'Gohir.A03G044000' => 'ghi', 'Gohir.A03G044100' => 'ghi', 'Gohir.A04G083100' => 'ghi', 'Gohir.A07G127200' => 'ghi', 'Gohir.A07G132400' => 'ghi', 'Gohir.A08G000700' => 'ghi', 'Gohir.A11G327300' => 'ghi', 'Gohir.D01G211500' => 'ghi', 'Gohir.D03G123400' => 'ghi', 'Gohir.D03G123500' => 'ghi', 'Gohir.D04G121800' => 'ghi', 'Gohir.D07G131500' => 'ghi', 'Gohir.D07G136600' => 'ghi', 'Gohir.D08G011600' => 'ghi', 'Gohir.D11G346200' => 'ghi', 'Gorai.001G142800' => 'gra', 'Gorai.001G148700' => 'gra', 'Gorai.002G257300' => 'gra', 'Gorai.003G130000' => 'gra', 'Gorai.003G130100' => 'gra', 'Gorai.004G005300' => 'gra', 'Gorai.007G376500' => 'gra', 'Gorai.012G104700' => 'gra', 'GSVIVG01017946001' => 'vvi', 'GSVIVG01024928001' => 'vvi', 'GSVIVG01028227001' => 'vvi', 'GSVIVG01034151001' => 'vvi', 'HanXRQChr05g0135031' => 'han', 'HanXRQChr05g0135041' => 'han', 'HanXRQChr05g0140021' => 'han', 'HanXRQChr06g0178981' => 'han', 'HanXRQChr07g0188251' => 'han', 'HanXRQChr08g0235311' => 'han', 'HanXRQChr09g0271011' => 'han', 'HanXRQChr10g0293321' => 'han', 'HanXRQChr13g0388171' => 'han', 'Haze_00916' => 'cav', 'Haze_05063' => 'cav', 'Haze_20814' => 'cav', 'Haze_24128' => 'cav', 'Hma1.2p1_0745F.1_g212010' => 'hma', 'Hma1.2p1_0757F.1_g213260' => 'hma', 'Hma1.2p1_0936F.1_g238840' => 'hma', 'Hma1.2p1_1735F.1_g299890' => 'hma', 'Hma1.2p1_1861F.1_g305685' => 'hma', 'HPP92_003397' => 'vpl', 'HPP92_012597' => 'vpl', 'HPP92_015520' => 'vpl', 'HPP92_015539' => 'vpl', 'HPP92_020373' => 'vpl', 'Hund04938' => 'sun', 'Hund10677' => 'sun', 'Hund11033' => 'sun', 'Hund12155' => 'sun', 'Lalb_Chr01g0022551' => 'lal', 'Lalb_Chr03g0042341' => 'lal', 'Lalb_Chr07g0192931' => 'lal', 'Lalb_Chr12g0209551' => 'lal', 'Lalb_Chr19g0125251' => 'lal', 'Lalb_Chr19g0137891' => 'lal', 'Lalb_Chr21g0304641' => 'lal', 'Lalb_Chr21g0309881' => 'lal', 'Lj1A5T12' => 'lonja', 'Lj1C148G10' => 'lonja', 'Lj2A93T83' => 'lonja', 'Lj3A738G68' => 'lonja', 'Lj3C966T1' => 'lonja', 'Lj3g0018958' => 'lja', 'Lj3g0021831' => 'lja', 'Lj3g0025443' => 'lja', 'Lj4g0026809' => 'lja', 'Lj5g0012558' => 'lja', 'Lj5g0021586' => 'lja', 'Lsat_1_v5_gn_5_156840' => 'lsa', 'Lsat_1_v5_gn_8_73460' => 'lsa', 'Lsat_1_v5_gn_8_73481' => 'lsa', 'Lsat_1_v5_gn_9_31601' => 'lsa', 'Lsat_1_v5_gn_9_77320' => 'lsa', 'Manes.01G171300' => 'mes', 'Manes.01G171400' => 'mes', 'Manes.01G236100' => 'mes', 'Manes.02G130500' => 'mes', 'Manes.02G130600' => 'mes', 'Manes.03G180200' => 'mes', 'Manes.05G007000' => 'mes', 'Manes.08G084400' => 'mes', 'Manes.09G092600' => 'mes', 'Manes.15G027900' => 'mes', 'MBI04_g40948_MAGBIO' => 'mbi', 'MBI14_g12123_MAGBIO' => 'mbi', 'MBI18_g28915_MAGBIO' => 'mbi', 'MCO09G053' => 'mco', 'MCO11G782' => 'mco', 'MCO15G215' => 'mco', 'MD03G1088500' => 'mdo', 'MD03G1088600' => 'mdo', 'MD04G1130800' => 'mdo', 'MD09G1291700' => 'mdo', 'MD11G1097500' => 'mdo', 'MD11G1097600' => 'mdo', 'MD12G1143900' => 'mdo', 'MD13G1191400' => 'mdo', 'MD16G1191500' => 'mdo', 'Medtr1g085570' => 'mtr', 'Medtr1g104610' => 'mtr', 'Medtr2g097520' => 'mtr', 'Medtr4g021800' => 'mtr', 'Medtr4g021825' => 'mtr', 'Medtr4g064270' => 'mtr', 'Medtr4g064380' => 'mtr', 'Medtr7g062150' => 'mtr', 'MELO3C003138.2' => 'cme', 'MELO3C005187.2' => 'cme', 'MELO3C009252.2' => 'cme', 'MELO3C014481.2' => 'cme', 'MELO3C020616.2' => 'cme', 'MELO3C020617.2' => 'cme', 'MELO3C020618.2' => 'cme', 'Migut.G00328' => 'egut', 'Migut.J00320' => 'egut', 'Migut.L01000' => 'egut', 'Migut.L01953' => 'egut', 'MSTRG.10253' => 'ama', 'MSTRG.19077' => 'ama', 'MSTRG.26780' => 'ama', 'MSTRG.4023' => 'ama', 'MSTRG.5655' => 'ama', 'MSTRG.9992' => 'ama', 'Nitab4.5_0000043g0310' => 'nta', 'Nitab4.5_0000463g0080' => 'nta', 'Nitab4.5_0000705g0170' => 'nta', 'Nitab4.5_0001326g0060' => 'nta', 'Nitab4.5_0001628g0030' => 'nta', 'Nitab4.5_0002103g0110' => 'nta', 'Nitab4.5_0002946g0030' => 'nta', 'Nitab4.5_0004639g0030' => 'nta', 'Nn2g11149' => 'nnu', 'Nn2g13389' => 'nnu', 'Nn4g25326' => 'nnu', 'Nn4g26290' => 'nnu', 'Nn5g29865' => 'nnu', 'Oeu004163.1' => 'oeu', 'Oeu006901.1' => 'oeu', 'Oeu010096.1' => 'oeu', 'Oeu024340.1' => 'oeu', 'Oeu048369.1' => 'oeu', 'Os01g0973000' => 'osa', 'Os03g0273800' => 'osa', 'Os03g0701200' => 'osa', 'Os03g0834050' => 'osa', 'Os07g0634400' => 'osa', 'Peaxi162Scf00092g01414' => 'pax', 'Peaxi162Scf00165g00818' => 'pax', 'Peaxi162Scf00309g00516' => 'pax', 'Peaxi162Scf00774g00218' => 'pax', 'PGR004G1824' => 'pgr', 'PGR004G2606' => 'pgr', 'PGR031G2716' => 'pgr', 'PGR102G2460' => 'pgr', 'PGR142G2599' => 'pgr', 'PGSC0003DMG400000843' => 'stu', 'PGSC0003DMG400008829' => 'stu', 'PGSC0003DMG400030418' => 'stu', 'PGSC0003DMG400031834' => 'stu', 'PGSC0003DMG401028300' => 'stu', 'PGSC0003DMG402028300' => 'stu', 'Phvul.001G219300' => 'pvu', 'Phvul.007G056000' => 'pvu', 'Phvul.007G208000' => 'pvu', 'Phvul.008G119500' => 'pvu', 'Phvul.010G011200' => 'pvu', 'Phvul.010G014800' => 'pvu', 'Phvul.011G062900' => 'pvu', 'Phvul.L007043' => 'pvu', 'Potri.001G242300' => 'ptr', 'Potri.002G185300' => 'ptr', 'Potri.006G086900' => 'ptr', 'Potri.008G151700' => 'ptr', 'Potri.009G033500' => 'ptr', 'Potri.010G089300' => 'ptr', 'Potri.014G110800' => 'ptr', 'Pp3c27_8130' => 'ppa', 'Pp3c6_27410' => 'ppa', 'PRCOL_00001659' => 'pco', 'PRCOL_00001927' => 'pco', 'PRCOL_00003649' => 'pco', 'Prupe.1G011600' => 'ppe', 'Prupe.3G000800' => 'ppe', 'Prupe.3G001100' => 'ppe', 'Prupe.6G072700' => 'ppe', 'Prupe.6G072800' => 'ppe', 'Prupe.6G257300' => 'ppe', 'Prupe.8G033000' => 'ppe', 'Psat0s2633g0080' => 'psa', 'Psat0s3396g0080' => 'psa', 'Psat0s3396g0200' => 'psa', 'Psat3g139080' => 'psa', 'Psat5g285080' => 'psa', 'Psat6g157760' => 'psa', 'Psat6g208440' => 'psa', 'Psat7g215320' => 'psa', 'Psat7g215400' => 'psa', 'Psat7g235600' => 'psa', 'Psat7g235760' => 'psa', 'PSO063G4603' => 'pso', 'PSO210G0182' => 'pso', 'PSO210G0196' => 'pso', 'PSO339G0394' => 'pso', 'PSO339G4127' => 'pso', 'PSO513G0064' => 'pso', 'PSO761G0079' => 'pso', 'QL01p031003' => 'qlo', 'QL01p031078' => 'qlo', 'QL06p003004' => 'qlo', 'QL07p048731' => 'qlo', 'QL09p037427' => 'qlo', 'RcHm_v2.0_Chr3g0466361' => 'rch', 'RcHm_v2.0_Chr3g0485571' => 'rch', 'RcHm_v2.0_Chr4g0416551' => 'rch', 'RcHm_v2.0_Chr5g0065831' => 'rch', 'Rhsim01G0230500' => 'rsi', 'Rhsim05G0194000' => 'rsi', 'Rhsim08G0250400' => 'rsi', 'Sabra02G0131000' => 'sbr', 'Sabra06G0066300' => 'sbr', 'Sabra08G0115500' => 'sbr', 'Sabra09G0023900' => 'sbr', 'Sabra10G0054000' => 'sbr', 'Sabra14G0081500' => 'sbr', 'Sabra16G0147100' => 'sbr', 'SalBow2G2957' => 'sbo', 'SalBow4G3320' => 'sbo', 'SalBow8G1894' => 'sbo', 'Sc07g0007950' => 'sci', 'Sc12g0001360' => 'sci', 'Sc13g0004330' => 'sci', 'Sc20g0005010' => 'sci', 'Sed0000361' => 'sed', 'Sed0001706' => 'sed', 'Sed0002422' => 'sed', 'Sed0004029' => 'sed', 'Sed0004602' => 'sed', 'Sed0004943' => 'sed', 'Sed0008646' => 'sed', 'Sed0023313' => 'sed', 'Sed0024843' => 'sed', 'SEGI_00081' => 'sgi', 'SEGI_00947' => 'sgi', 'SEGI_04046' => 'sgi', 'SEGI_06880' => 'sgi', 'SEGI_09736' => 'sgi', 'SEGI_12741' => 'sgi', 'SEGI_14530' => 'sgi', 'SEGI_20705' => 'sgi', 'SEGI_26088' => 'sgi', 'SEGI_28323' => 'sgi', 'SEGI_33343' => 'sgi', 'SGA_v2.0_scaffold126G33775' => 'sas', 'SGA_v2.0_scaffold2G01337' => 'sas', 'SGA_v2.0_scaffold38G15006' => 'sas', 'SGA_v2.0_scaffold39G15264' => 'sas', 'SGA_v2.0_scaffold453G51880' => 'sas', 'SHI12696' => 'shi', 'SMO367G1096' => 'smo', 'Solyc01g068630.3' => 'sly', 'Solyc05g011880.3' => 'sly', 'Solyc06g076300.3' => 'sly', 'Solyc09g010940.4' => 'sly', 'Solyc09g075890.3' => 'sly', 'Sopen01g030560' => 'spe', 'Sopen05g006630' => 'spe', 'Sopen06g032720' => 'spe', 'Sopen09g005660' => 'spe', 'Sopen09g030690' => 'spe', 'Sp4g14540' => 'spa', 'Sp4g20030' => 'spa', 'Sp5g01320' => 'spa', 'Sp6g21170' => 'spa', 'Sp6g21180' => 'spa', 'Sp6g21190' => 'spa', 'Sp6g40220' => 'spa', 'TAR362G0122' => 'tar', 'TAR362G1338' => 'tar', 'TAR369G0590' => 'tar', 'TAR371G0824' => 'tar', 'TAR622G1429' => 'tar', 'TAR623G0734' => 'tar', 'TAR625G0441' => 'tar', 'TAR629G0976' => 'tar', 'TAR633G1195' => 'tar', 'TAR636G2660' => 'tar', 'THA.LOC104799440' => 'tha', 'THA.LOC104800966' => 'tha', 'THA.LOC104806559' => 'tha', 'THA.LOC104810765' => 'tha', 'THA.LOC104816266' => 'tha', 'THA.LOC104817419' => 'tha', 'THA.LOC104827021' => 'tha', 'Thecc.01G327400' => 'tca', 'Thecc.04G229200' => 'tca', 'Thecc.05G037400' => 'tca', 'Thecc.09G318600' => 'tca', 'Thecc.09G318700' => 'tca', 'Thhalv10006238m.g' => 'esa', 'Thhalv10014321m.g' => 'esa', 'Thhalv10014335m.g' => 'esa', 'Thhalv10015826m.g' => 'esa', 'Thhalv10017107m.g' => 'esa', 'Thhalv10017180m.g' => 'esa', 'Thhalv10029339m.g' => 'esa', 'TPR.G1699' => 'tpr', 'TPR.G23609' => 'tpr', 'TPR.G3081' => 'tpr', 'TPR.G40397' => 'tpr', 'TPR.G5522' => 'tpr', 'TPR.G5618' => 'tpr', 'TPR.G5626' => 'tpr', 'TWI09G1632' => 'twi', 'TWI23G1230' => 'twi', 'TWI53G1064' => 'twi', 'TWI59G0751' => 'twi', 'TWI74G0947' => 'twi', 'TWI77G0337' => 'twi', 'TWI79G1254' => 'twi', 'unitig_0.g2341' => 'ugi', 'unitig_26.g10006' => 'ugi', 'unitig_26.g10008' => 'ugi', 'unitig_26.g9192' => 'ugi', 'vmacro14547' => 'vma', 'vmacro15333' => 'vma', 'vmacro18743' => 'vma', 'vmacro20166' => 'vma', 'VMungo0331G0523' => 'vmu', 'VMungo0331G1202' => 'vmu', 'VMungo0720G1228' => 'vmu', 'VMungo0720G1514' => 'vmu', 'VMungo1080G0169' => 'vmu', 'VMungo1127G1475' => 'vmu', 'VMungo1383G1208' => 'vmu', 'VMungo1383G1698' => 'vmu', 'Zm00001eb012270' => 'zma', 'Zm00001eb054100' => 'zma', 'Zm00001eb063350' => 'zma', 'Zm00001eb328560' => 'zma', 'Zm00001eb342820' => 'zma', 'Zm00001eb362210' => 'zma', 'Zm00001eb397730' => 'zma', 'Zm00001eb399750' => 'zma' ) $gf_id = 'HOM05D000959' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000959' ) $data_identifier = 'HOM05D000959' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 5, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 5, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 10, 'mbi' => (int) 3, 'mco' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 2, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 3, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 11, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399750' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000959', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '622', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p07100' => 'bna', 'A03p11720' => 'bna', 'A05p08300' => 'bna', 'A05p13380' => 'bna', 'A09p54130' => 'bna', 'A10p16690' => 'bna', 'A10p16700' => 'bna', 'A10p33390' => 'bna', 'Aa31LG10G16020' => 'aar', 'Aa31LG1G11810' => 'aar', 'Aa31LG1G11830' => 'aar', 'Aa31LG1G22510' => 'aar', 'Aa31LG5G4890' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5793' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2310' => 'aag', 'Actinidia08499' => 'ach', 'Actinidia11262' => 'ach', 'Actinidia23926' => 'ach', 'Actinidia34420' => 'ach', 'Actinidia36970' => 'ach', 'Ah.02g111220' => 'amhyb', 'Ah.15g097750' => 'amhyb', 'AL4G27500' => 'aly', 'AL6G11470' => 'aly', 'AL8G35950' => 'aly', 'AL8G35960' => 'aly', 'AL8G35970' => 'aly', 'Aqoxy1G00912' => 'aox', 'Aqoxy2G02253' => 'aox', 'Aqoxy2G02411' => 'aox', 'Aqoxy5G00485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BZ66YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K8ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM4FUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6BF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HFV7XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25JBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0YNNV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MAKK6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P70IT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP2Z6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V61LZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YWP64R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3S9AI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7PGHH' => 'arhy', 'AT2G32150' => 'ath', 'AT3G62040' => 'ath', 'AT5G02230' => 'ath', 'AT5G59480' => 'ath', 'AT5G59490' => 'ath', 'ATR0332G060' => 'atr', 'ATR0559G190' => 'atr', 'ATR0693G294' => 'atr', 'Atru.chr3.3975' => 'acertr', 'Atru.chr3.3976' => 'acertr', 'Atru.chr3.3977' => 'acertr', 'Atru.chr4.2498' => 'acertr', 'Atru.chr5.838' => 'acertr', 'Atru.chr8.1990' => 'acertr', 'Atru.chr8.1991' => 'acertr', 'Atru.chr8.1992' => 'acertr', 'AUR62001759' => 'cqu', 'AUR62009545' => 'cqu', 'AUR62010474' => 'cqu', 'AUR62025820' => 'cqu', 'AUR62030422' => 'cqu', 'AUR62033605' => 'cqu', 'AUR62038615' => 'cqu', 'AUR62041347' => 'cqu', 'BcaB01g04574' => 'bca', 'BcaB02g09263' => 'bca', 'BcaB02g10453' => 'bca', 'BcaB05g22513' => 'bca', 'BcaB08g36253' => 'bca', 'BcaB08g36254' => 'bca', 'BcaC01g06519' => 'bca', 'BcaC02g11889' => 'bca', 'BcaC03g14010' => 'bca', 'BcaC03g18439' => 'bca', 'BcaC04g19765' => 'bca', 'BcaC09g48432' => 'bca', 'BcaNung07302' => 'bca', 'BolC2t06040H' => 'bol', 'BolC2t07346H' => 'bol', 'BolC3t13817H' => 'bol', 'BolC4t22625H' => 'bol', 'BolC4t23297H' => 'bol', 'BolC8t51278H' => 'bol', 'BolC9t58050H' => 'bol', 'BolC9t58051H' => 'bol', 'BolC9t60163H' => 'bol', 'BraA02t04712Z' => 'bra', 'BraA02t05791Z' => 'bra', 'BraA03t10483Z' => 'bra', 'BraA05t19795Z' => 'bra', 'BraA05t20276Z' => 'bra', 'BraA09t40827Z' => 'bra', 'BraA10t43750Z' => 'bra', 'BraA10t43751Z' => 'bra', 'BraA10t45370Z' => 'bra', 'C02p00400' => 'bna', 'C02p12460' => 'bna', 'C03p13680' => 'bna', 'C04p10270' => 'bna', 'C04p17500' => 'bna', 'C08p37010' => 'bna', 'C09p51880' => 'bna', 'C09p51890' => 'bna', 'C09p74300' => 'bna', 'CAN.G179.26' => 'can', 'CAN.G3384.1' => 'can', 'CAN.G394.68' => 'can', 'CAN.G907.13' => 'can', 'CANSAT11G0012' => 'cansat', 'CANSAT25G1586' => 'cansat', 'CANSAT35G0735' => 'cansat', 'CANSAT54G0556' => 'cansat', 'CANSAT64G0356' => 'cansat', 'CANSAT78G2042' => 'cansat', 'CARHR125920' => 'chi', 'CARHR131910' => 'chi', 'CARHR172390' => 'chi', 'CARHR211140' => 'chi', 'CARHR285850' => 'chi', 'CARHR285860' => 'chi', 'Carub.0004s1347' => 'cru', 'Carub.0004s1960' => 'cru', 'Carub.0005s2880' => 'cru', 'Carub.0006s0107' => 'cru', 'Carub.0008s2015' => 'cru', 'Carub.0008s2016' => 'cru', 'Carub.0008s2017' => 'cru', 'Ca_01315_v3' => 'car', 'Ca_05063_v3' => 'car', 'Ca_10231_v3' => 'car', 'Ca_10913_v3' => 'car', 'Ca_19156_v3' => 'car', 'Ca_23644_v3' => 'car', 'Ca_26735_v3' => 'car', 'Cc01_g13130' => 'ccan', 'Cc02_g21690' => 'ccan', 'Cc03_g03600' => 'ccan', 'Cc06_g02510' => 'ccan', 'CDE02G1265' => 'cde', 'CDE05G0415' => 'cde', 'CDE08G1082' => 'cde', 'Cfa005780' => 'cfa', 'Cfa011522' => 'cfa', 'Cfa011523' => 'cfa', 'Cfa015627' => 'cfa', 'Cfa017359' => 'cfa', 'Ciclev10005687m.g' => 'ccl', 'Ciclev10012173m.g' => 'ccl', 'Ciclev10021621m.g' => 'ccl', 'Ciclev10028968m.g' => 'ccl', 'Ciclev10029907m.g' => 'ccl', 'CiPaw.01G164800' => 'cil', 'CiPaw.07G083700' => 'cil', 'CiPaw.07G127000' => 'cil', 'CiPaw.07G136900' => 'cil', 'CiPaw.08G081700' => 'cil', 'CiPaw.09G194600' => 'cil', 'CiPaw.10G146500' => 'cil', 'CiPaw.13G091500' => 'cil', 'CiPaw.13G091600' => 'cil', 'ClCG00G003390' => 'cla', 'ClCG01G007220' => 'cla', 'ClCG03G001370' => 'cla', 'ClCG04G008100' => 'cla', 'ClCG06G006110' => 'cla', 'ClCG06G006130' => 'cla', 'ClCG10G021210' => 'cla', 'COL.COLO4_07648' => 'col', 'COL.COLO4_07650' => 'col', 'COL.COLO4_07651' => 'col', 'COL.COLO4_14780' => 'col', 'COL.COLO4_18546' => 'col', 'COL.COLO4_18547' => 'col', 'COL.COLO4_23103' => 'col', 'COL.COLO4_30419' => 'col', 'COL.COLO4_34232' => 'col', 'Cpa.g.sc169.20' => 'cpa', 'Cpa.g.sc57.45' => 'cpa', 'Cpa.g.sc58.124' => 'cpa', 'Cpa.g.sc58.125' => 'cpa', 'Cpa.g.sc81.118' => 'cpa', 'Cpa.g.sc81.119' => 'cpa', 'Cre12.g524700' => 'cre', 'CsaV3_1G034430' => 'csa', 'CsaV3_1G034440' => 'csa', 'CsaV3_1G034450' => 'csa', 'CsaV3_3G034830' => 'csa', 'CsaV3_4G025090' => 'csa', 'CsaV3_5G018660' => 'csa', 'CsaV3_6G038160' => 'csa', 'CSS0003447' => 'camsi', 'CSS0017840' => 'camsi', 'CSS0019260' => 'camsi', 'CSS0040375' => 'camsi', 'CSS0042533' => 'camsi', 'DCAR_005960' => 'dca', 'DCAR_012104' => 'dca', 'DCAR_012105' => 'dca', 'DCAR_012293' => 'dca', 'DCAR_015632' => 'dca', 'DCAR_024602' => 'dca', 'DCAR_028752' => 'dca', 'Dinv06261' => 'din', 'Dinv13982' => 'din', 'Dinv17029' => 'din', 'Dinv18463' => 'din', 'Dinv33181' => 'din', 'Dinv35585' => 'din', 'Dinv37161' => 'din', 'Dinv42977' => 'din', 'Dinv43122' => 'din', 'Dinv44517' => 'din', 'Duzib093G0256' => 'dzi', 'Duzib106G1254' => 'dzi', 'Duzib128G1789' => 'dzi', 'Duzib133G0633' => 'dzi', 'Duzib138G0510' => 'dzi', 'Duzib150G1084' => 'dzi', 'Duzib168G0488' => 'dzi', 'Duzib168G1523' => 'dzi', 'Duzib170G0133' => 'dzi', 'ECA234G1433' => 'eca', 'ECA236G1432' => 'eca', 'ECA236G2256' => 'eca', 'ECA236G2365' => 'eca', 'ECA236G4830' => 'eca', 'ECA248G1505' => 'eca', 'EL10Ac3g06431' => 'bvu', 'EL10Ac5g12577' => 'bvu', 'EL10Ac6g13533' => 'bvu', 'EL10Ac7g16045' => 'bvu', 'Eucgr.A01281' => 'egr', 'Eucgr.B02326' => 'egr', 'Eucgr.H03532' => 'egr', 'Eucgr.K00553' => 'egr', 'Eucgr.K03116' => 'egr', 'FAN02G3963' => 'fan', 'FAN05G0438' => 'fan', 'FAN09G2434' => 'fan', 'FAN12G3984' => 'fan', 'FAN14G0798' => 'fan', 'FAN17G0652' => 'fan', 'FAN19G1988' => 'fan', 'FAN22G0632' => 'fan', 'FAN23G0387' => 'fan', 'FAN26G1323' => 'fan', 'FAN28G0666' => 'fan', 'FvH4_1g26080' => 'fve', 'FvH4_3g36780' => 'fve', 'FvH4_4g15270' => 'fve', 'FvH4_6g13490' => 'fve', 'Glyma.01G098700' => 'gma', 'Glyma.03G065900' => 'gma', 'Glyma.03G073754' => 'gma', 'Glyma.03G073758' => 'gma', 'Glyma.03G083200' => 'gma', 'Glyma.03G225500' => 'gma', 'Glyma.05G037766' => 'gma', 'Glyma.07G133500' => 'gma', 'Glyma.10G139400' => 'gma', 'Glyma.10G248900' => 'gma', 'Glyma.11G137800' => 'gma', 'Glyma.12G061300' => 'gma', 'Glyma.13G337900' => 'gma', 'Glyma.15G036600' => 'gma', 'Glyma.18G182800' => 'gma', 'Glyma.19G222500' => 'gma', 'Glyma.20G144800' => 'gma', 'Gohir.A01G222000' => 'ghi', 'Gohir.A03G044000' => 'ghi', 'Gohir.A03G044100' => 'ghi', 'Gohir.A04G083100' => 'ghi', 'Gohir.A07G127200' => 'ghi', 'Gohir.A07G132400' => 'ghi', 'Gohir.A08G000700' => 'ghi', 'Gohir.A11G327300' => 'ghi', 'Gohir.D01G211500' => 'ghi', 'Gohir.D03G123400' => 'ghi', 'Gohir.D03G123500' => 'ghi', 'Gohir.D04G121800' => 'ghi', 'Gohir.D07G131500' => 'ghi', 'Gohir.D07G136600' => 'ghi', 'Gohir.D08G011600' => 'ghi', 'Gohir.D11G346200' => 'ghi', 'Gorai.001G142800' => 'gra', 'Gorai.001G148700' => 'gra', 'Gorai.002G257300' => 'gra', 'Gorai.003G130000' => 'gra', 'Gorai.003G130100' => 'gra', 'Gorai.004G005300' => 'gra', 'Gorai.007G376500' => 'gra', 'Gorai.012G104700' => 'gra', 'GSVIVG01017946001' => 'vvi', 'GSVIVG01024928001' => 'vvi', 'GSVIVG01028227001' => 'vvi', 'GSVIVG01034151001' => 'vvi', 'HanXRQChr05g0135031' => 'han', 'HanXRQChr05g0135041' => 'han', 'HanXRQChr05g0140021' => 'han', 'HanXRQChr06g0178981' => 'han', 'HanXRQChr07g0188251' => 'han', 'HanXRQChr08g0235311' => 'han', 'HanXRQChr09g0271011' => 'han', 'HanXRQChr10g0293321' => 'han', 'HanXRQChr13g0388171' => 'han', 'Haze_00916' => 'cav', 'Haze_05063' => 'cav', 'Haze_20814' => 'cav', 'Haze_24128' => 'cav', 'Hma1.2p1_0745F.1_g212010' => 'hma', 'Hma1.2p1_0757F.1_g213260' => 'hma', 'Hma1.2p1_0936F.1_g238840' => 'hma', 'Hma1.2p1_1735F.1_g299890' => 'hma', 'Hma1.2p1_1861F.1_g305685' => 'hma', 'HPP92_003397' => 'vpl', 'HPP92_012597' => 'vpl', 'HPP92_015520' => 'vpl', 'HPP92_015539' => 'vpl', 'HPP92_020373' => 'vpl', 'Hund04938' => 'sun', 'Hund10677' => 'sun', 'Hund11033' => 'sun', 'Hund12155' => 'sun', 'Lalb_Chr01g0022551' => 'lal', 'Lalb_Chr03g0042341' => 'lal', 'Lalb_Chr07g0192931' => 'lal', 'Lalb_Chr12g0209551' => 'lal', 'Lalb_Chr19g0125251' => 'lal', 'Lalb_Chr19g0137891' => 'lal', 'Lalb_Chr21g0304641' => 'lal', 'Lalb_Chr21g0309881' => 'lal', 'Lj1A5T12' => 'lonja', 'Lj1C148G10' => 'lonja', 'Lj2A93T83' => 'lonja', 'Lj3A738G68' => 'lonja', 'Lj3C966T1' => 'lonja', 'Lj3g0018958' => 'lja', 'Lj3g0021831' => 'lja', 'Lj3g0025443' => 'lja', 'Lj4g0026809' => 'lja', 'Lj5g0012558' => 'lja', 'Lj5g0021586' => 'lja', 'Lsat_1_v5_gn_5_156840' => 'lsa', 'Lsat_1_v5_gn_8_73460' => 'lsa', 'Lsat_1_v5_gn_8_73481' => 'lsa', 'Lsat_1_v5_gn_9_31601' => 'lsa', 'Lsat_1_v5_gn_9_77320' => 'lsa', 'Manes.01G171300' => 'mes', 'Manes.01G171400' => 'mes', 'Manes.01G236100' => 'mes', 'Manes.02G130500' => 'mes', 'Manes.02G130600' => 'mes', 'Manes.03G180200' => 'mes', 'Manes.05G007000' => 'mes', 'Manes.08G084400' => 'mes', 'Manes.09G092600' => 'mes', 'Manes.15G027900' => 'mes', 'MBI04_g40948_MAGBIO' => 'mbi', 'MBI14_g12123_MAGBIO' => 'mbi', 'MBI18_g28915_MAGBIO' => 'mbi', 'MCO09G053' => 'mco', 'MCO11G782' => 'mco', 'MCO15G215' => 'mco', 'MD03G1088500' => 'mdo', 'MD03G1088600' => 'mdo', 'MD04G1130800' => 'mdo', 'MD09G1291700' => 'mdo', 'MD11G1097500' => 'mdo', 'MD11G1097600' => 'mdo', 'MD12G1143900' => 'mdo', 'MD13G1191400' => 'mdo', 'MD16G1191500' => 'mdo', 'Medtr1g085570' => 'mtr', 'Medtr1g104610' => 'mtr', 'Medtr2g097520' => 'mtr', 'Medtr4g021800' => 'mtr', 'Medtr4g021825' => 'mtr', 'Medtr4g064270' => 'mtr', 'Medtr4g064380' => 'mtr', 'Medtr7g062150' => 'mtr', 'MELO3C003138.2' => 'cme', 'MELO3C005187.2' => 'cme', 'MELO3C009252.2' => 'cme', 'MELO3C014481.2' => 'cme', 'MELO3C020616.2' => 'cme', 'MELO3C020617.2' => 'cme', 'MELO3C020618.2' => 'cme', 'Migut.G00328' => 'egut', 'Migut.J00320' => 'egut', 'Migut.L01000' => 'egut', 'Migut.L01953' => 'egut', 'MSTRG.10253' => 'ama', 'MSTRG.19077' => 'ama', 'MSTRG.26780' => 'ama', 'MSTRG.4023' => 'ama', 'MSTRG.5655' => 'ama', 'MSTRG.9992' => 'ama', 'Nitab4.5_0000043g0310' => 'nta', 'Nitab4.5_0000463g0080' => 'nta', 'Nitab4.5_0000705g0170' => 'nta', 'Nitab4.5_0001326g0060' => 'nta', 'Nitab4.5_0001628g0030' => 'nta', 'Nitab4.5_0002103g0110' => 'nta', 'Nitab4.5_0002946g0030' => 'nta', 'Nitab4.5_0004639g0030' => 'nta', 'Nn2g11149' => 'nnu', 'Nn2g13389' => 'nnu', 'Nn4g25326' => 'nnu', 'Nn4g26290' => 'nnu', 'Nn5g29865' => 'nnu', 'Oeu004163.1' => 'oeu', 'Oeu006901.1' => 'oeu', 'Oeu010096.1' => 'oeu', 'Oeu024340.1' => 'oeu', 'Oeu048369.1' => 'oeu', 'Os01g0973000' => 'osa', 'Os03g0273800' => 'osa', 'Os03g0701200' => 'osa', 'Os03g0834050' => 'osa', 'Os07g0634400' => 'osa', 'Peaxi162Scf00092g01414' => 'pax', 'Peaxi162Scf00165g00818' => 'pax', 'Peaxi162Scf00309g00516' => 'pax', 'Peaxi162Scf00774g00218' => 'pax', 'PGR004G1824' => 'pgr', 'PGR004G2606' => 'pgr', 'PGR031G2716' => 'pgr', 'PGR102G2460' => 'pgr', 'PGR142G2599' => 'pgr', 'PGSC0003DMG400000843' => 'stu', 'PGSC0003DMG400008829' => 'stu', 'PGSC0003DMG400030418' => 'stu', 'PGSC0003DMG400031834' => 'stu', 'PGSC0003DMG401028300' => 'stu', 'PGSC0003DMG402028300' => 'stu', 'Phvul.001G219300' => 'pvu', 'Phvul.007G056000' => 'pvu', 'Phvul.007G208000' => 'pvu', 'Phvul.008G119500' => 'pvu', 'Phvul.010G011200' => 'pvu', 'Phvul.010G014800' => 'pvu', 'Phvul.011G062900' => 'pvu', 'Phvul.L007043' => 'pvu', 'Potri.001G242300' => 'ptr', 'Potri.002G185300' => 'ptr', 'Potri.006G086900' => 'ptr', 'Potri.008G151700' => 'ptr', 'Potri.009G033500' => 'ptr', 'Potri.010G089300' => 'ptr', 'Potri.014G110800' => 'ptr', 'Pp3c27_8130' => 'ppa', 'Pp3c6_27410' => 'ppa', 'PRCOL_00001659' => 'pco', 'PRCOL_00001927' => 'pco', 'PRCOL_00003649' => 'pco', 'Prupe.1G011600' => 'ppe', 'Prupe.3G000800' => 'ppe', 'Prupe.3G001100' => 'ppe', 'Prupe.6G072700' => 'ppe', 'Prupe.6G072800' => 'ppe', 'Prupe.6G257300' => 'ppe', 'Prupe.8G033000' => 'ppe', 'Psat0s2633g0080' => 'psa', 'Psat0s3396g0080' => 'psa', 'Psat0s3396g0200' => 'psa', 'Psat3g139080' => 'psa', 'Psat5g285080' => 'psa', 'Psat6g157760' => 'psa', 'Psat6g208440' => 'psa', 'Psat7g215320' => 'psa', 'Psat7g215400' => 'psa', 'Psat7g235600' => 'psa', 'Psat7g235760' => 'psa', 'PSO063G4603' => 'pso', 'PSO210G0182' => 'pso', 'PSO210G0196' => 'pso', 'PSO339G0394' => 'pso', 'PSO339G4127' => 'pso', 'PSO513G0064' => 'pso', 'PSO761G0079' => 'pso', 'QL01p031003' => 'qlo', 'QL01p031078' => 'qlo', 'QL06p003004' => 'qlo', 'QL07p048731' => 'qlo', 'QL09p037427' => 'qlo', 'RcHm_v2.0_Chr3g0466361' => 'rch', 'RcHm_v2.0_Chr3g0485571' => 'rch', 'RcHm_v2.0_Chr4g0416551' => 'rch', 'RcHm_v2.0_Chr5g0065831' => 'rch', 'Rhsim01G0230500' => 'rsi', 'Rhsim05G0194000' => 'rsi', 'Rhsim08G0250400' => 'rsi', 'Sabra02G0131000' => 'sbr', 'Sabra06G0066300' => 'sbr', 'Sabra08G0115500' => 'sbr', 'Sabra09G0023900' => 'sbr', 'Sabra10G0054000' => 'sbr', 'Sabra14G0081500' => 'sbr', 'Sabra16G0147100' => 'sbr', 'SalBow2G2957' => 'sbo', 'SalBow4G3320' => 'sbo', 'SalBow8G1894' => 'sbo', 'Sc07g0007950' => 'sci', 'Sc12g0001360' => 'sci', 'Sc13g0004330' => 'sci', 'Sc20g0005010' => 'sci', 'Sed0000361' => 'sed', 'Sed0001706' => 'sed', 'Sed0002422' => 'sed', 'Sed0004029' => 'sed', 'Sed0004602' => 'sed', 'Sed0004943' => 'sed', 'Sed0008646' => 'sed', 'Sed0023313' => 'sed', 'Sed0024843' => 'sed', 'SEGI_00081' => 'sgi', 'SEGI_00947' => 'sgi', 'SEGI_04046' => 'sgi', 'SEGI_06880' => 'sgi', 'SEGI_09736' => 'sgi', 'SEGI_12741' => 'sgi', 'SEGI_14530' => 'sgi', 'SEGI_20705' => 'sgi', 'SEGI_26088' => 'sgi', 'SEGI_28323' => 'sgi', 'SEGI_33343' => 'sgi', 'SGA_v2.0_scaffold126G33775' => 'sas', 'SGA_v2.0_scaffold2G01337' => 'sas', 'SGA_v2.0_scaffold38G15006' => 'sas', 'SGA_v2.0_scaffold39G15264' => 'sas', 'SGA_v2.0_scaffold453G51880' => 'sas', 'SHI12696' => 'shi', 'SMO367G1096' => 'smo', 'Solyc01g068630.3' => 'sly', 'Solyc05g011880.3' => 'sly', 'Solyc06g076300.3' => 'sly', 'Solyc09g010940.4' => 'sly', 'Solyc09g075890.3' => 'sly', 'Sopen01g030560' => 'spe', 'Sopen05g006630' => 'spe', 'Sopen06g032720' => 'spe', 'Sopen09g005660' => 'spe', 'Sopen09g030690' => 'spe', 'Sp4g14540' => 'spa', 'Sp4g20030' => 'spa', 'Sp5g01320' => 'spa', 'Sp6g21170' => 'spa', 'Sp6g21180' => 'spa', 'Sp6g21190' => 'spa', 'Sp6g40220' => 'spa', 'TAR362G0122' => 'tar', 'TAR362G1338' => 'tar', 'TAR369G0590' => 'tar', 'TAR371G0824' => 'tar', 'TAR622G1429' => 'tar', 'TAR623G0734' => 'tar', 'TAR625G0441' => 'tar', 'TAR629G0976' => 'tar', 'TAR633G1195' => 'tar', 'TAR636G2660' => 'tar', 'THA.LOC104799440' => 'tha', 'THA.LOC104800966' => 'tha', 'THA.LOC104806559' => 'tha', 'THA.LOC104810765' => 'tha', 'THA.LOC104816266' => 'tha', 'THA.LOC104817419' => 'tha', 'THA.LOC104827021' => 'tha', 'Thecc.01G327400' => 'tca', 'Thecc.04G229200' => 'tca', 'Thecc.05G037400' => 'tca', 'Thecc.09G318600' => 'tca', 'Thecc.09G318700' => 'tca', 'Thhalv10006238m.g' => 'esa', 'Thhalv10014321m.g' => 'esa', 'Thhalv10014335m.g' => 'esa', 'Thhalv10015826m.g' => 'esa', 'Thhalv10017107m.g' => 'esa', 'Thhalv10017180m.g' => 'esa', 'Thhalv10029339m.g' => 'esa', 'TPR.G1699' => 'tpr', 'TPR.G23609' => 'tpr', 'TPR.G3081' => 'tpr', 'TPR.G40397' => 'tpr', 'TPR.G5522' => 'tpr', 'TPR.G5618' => 'tpr', 'TPR.G5626' => 'tpr', 'TWI09G1632' => 'twi', 'TWI23G1230' => 'twi', 'TWI53G1064' => 'twi', 'TWI59G0751' => 'twi', 'TWI74G0947' => 'twi', 'TWI77G0337' => 'twi', 'TWI79G1254' => 'twi', 'unitig_0.g2341' => 'ugi', 'unitig_26.g10006' => 'ugi', 'unitig_26.g10008' => 'ugi', 'unitig_26.g9192' => 'ugi', 'vmacro14547' => 'vma', 'vmacro15333' => 'vma', 'vmacro18743' => 'vma', 'vmacro20166' => 'vma', 'VMungo0331G0523' => 'vmu', 'VMungo0331G1202' => 'vmu', 'VMungo0720G1228' => 'vmu', 'VMungo0720G1514' => 'vmu', 'VMungo1080G0169' => 'vmu', 'VMungo1127G1475' => 'vmu', 'VMungo1383G1208' => 'vmu', 'VMungo1383G1698' => 'vmu', 'Zm00001eb012270' => 'zma', 'Zm00001eb054100' => 'zma', 'Zm00001eb063350' => 'zma', 'Zm00001eb328560' => 'zma', 'Zm00001eb342820' => 'zma', 'Zm00001eb362210' => 'zma', 'Zm00001eb397730' => 'zma', 'Zm00001eb399750' => 'zma' ), 'gf_id' => 'HOM05D000959', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000959' ), 'data_identifier' => 'HOM05D000959', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000959', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '622', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p07100' => 'bna', 'A03p11720' => 'bna', 'A05p08300' => 'bna', 'A05p13380' => 'bna', 'A09p54130' => 'bna', 'A10p16690' => 'bna', 'A10p16700' => 'bna', 'A10p33390' => 'bna', 'Aa31LG10G16020' => 'aar', 'Aa31LG1G11810' => 'aar', 'Aa31LG1G11830' => 'aar', 'Aa31LG1G22510' => 'aar', 'Aa31LG5G4890' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5793' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2310' => 'aag', 'Actinidia08499' => 'ach', 'Actinidia11262' => 'ach', 'Actinidia23926' => 'ach', 'Actinidia34420' => 'ach', 'Actinidia36970' => 'ach', 'Ah.02g111220' => 'amhyb', 'Ah.15g097750' => 'amhyb', 'AL4G27500' => 'aly', 'AL6G11470' => 'aly', 'AL8G35950' => 'aly', 'AL8G35960' => 'aly', 'AL8G35970' => 'aly', 'Aqoxy1G00912' => 'aox', 'Aqoxy2G02253' => 'aox', 'Aqoxy2G02411' => 'aox', 'Aqoxy5G00485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BZ66YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K8ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM4FUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6BF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HFV7XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25JBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0YNNV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MAKK6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P70IT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP2Z6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V61LZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YWP64R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3S9AI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7PGHH' => 'arhy', 'AT2G32150' => 'ath', 'AT3G62040' => 'ath', 'AT5G02230' => 'ath', 'AT5G59480' => 'ath', 'AT5G59490' => 'ath', 'ATR0332G060' => 'atr', 'ATR0559G190' => 'atr', 'ATR0693G294' => 'atr', 'Atru.chr3.3975' => 'acertr', 'Atru.chr3.3976' => 'acertr', 'Atru.chr3.3977' => 'acertr', 'Atru.chr4.2498' => 'acertr', 'Atru.chr5.838' => 'acertr', 'Atru.chr8.1990' => 'acertr', 'Atru.chr8.1991' => 'acertr', 'Atru.chr8.1992' => 'acertr', 'AUR62001759' => 'cqu', 'AUR62009545' => 'cqu', 'AUR62010474' => 'cqu', 'AUR62025820' => 'cqu', 'AUR62030422' => 'cqu', 'AUR62033605' => 'cqu', 'AUR62038615' => 'cqu', 'AUR62041347' => 'cqu', 'BcaB01g04574' => 'bca', 'BcaB02g09263' => 'bca', 'BcaB02g10453' => 'bca', 'BcaB05g22513' => 'bca', 'BcaB08g36253' => 'bca', 'BcaB08g36254' => 'bca', 'BcaC01g06519' => 'bca', 'BcaC02g11889' => 'bca', 'BcaC03g14010' => 'bca', 'BcaC03g18439' => 'bca', 'BcaC04g19765' => 'bca', 'BcaC09g48432' => 'bca', 'BcaNung07302' => 'bca', 'BolC2t06040H' => 'bol', 'BolC2t07346H' => 'bol', 'BolC3t13817H' => 'bol', 'BolC4t22625H' => 'bol', 'BolC4t23297H' => 'bol', 'BolC8t51278H' => 'bol', 'BolC9t58050H' => 'bol', 'BolC9t58051H' => 'bol', 'BolC9t60163H' => 'bol', 'BraA02t04712Z' => 'bra', 'BraA02t05791Z' => 'bra', 'BraA03t10483Z' => 'bra', 'BraA05t19795Z' => 'bra', 'BraA05t20276Z' => 'bra', 'BraA09t40827Z' => 'bra', 'BraA10t43750Z' => 'bra', 'BraA10t43751Z' => 'bra', 'BraA10t45370Z' => 'bra', 'C02p00400' => 'bna', 'C02p12460' => 'bna', 'C03p13680' => 'bna', 'C04p10270' => 'bna', 'C04p17500' => 'bna', 'C08p37010' => 'bna', 'C09p51880' => 'bna', 'C09p51890' => 'bna', 'C09p74300' => 'bna', 'CAN.G179.26' => 'can', 'CAN.G3384.1' => 'can', 'CAN.G394.68' => 'can', 'CAN.G907.13' => 'can', 'CANSAT11G0012' => 'cansat', 'CANSAT25G1586' => 'cansat', 'CANSAT35G0735' => 'cansat', 'CANSAT54G0556' => 'cansat', 'CANSAT64G0356' => 'cansat', 'CANSAT78G2042' => 'cansat', 'CARHR125920' => 'chi', 'CARHR131910' => 'chi', 'CARHR172390' => 'chi', 'CARHR211140' => 'chi', 'CARHR285850' => 'chi', 'CARHR285860' => 'chi', 'Carub.0004s1347' => 'cru', 'Carub.0004s1960' => 'cru', 'Carub.0005s2880' => 'cru', 'Carub.0006s0107' => 'cru', 'Carub.0008s2015' => 'cru', 'Carub.0008s2016' => 'cru', 'Carub.0008s2017' => 'cru', 'Ca_01315_v3' => 'car', 'Ca_05063_v3' => 'car', 'Ca_10231_v3' => 'car', 'Ca_10913_v3' => 'car', 'Ca_19156_v3' => 'car', 'Ca_23644_v3' => 'car', 'Ca_26735_v3' => 'car', 'Cc01_g13130' => 'ccan', 'Cc02_g21690' => 'ccan', 'Cc03_g03600' => 'ccan', 'Cc06_g02510' => 'ccan', 'CDE02G1265' => 'cde', 'CDE05G0415' => 'cde', 'CDE08G1082' => 'cde', 'Cfa005780' => 'cfa', 'Cfa011522' => 'cfa', 'Cfa011523' => 'cfa', 'Cfa015627' => 'cfa', 'Cfa017359' => 'cfa', 'Ciclev10005687m.g' => 'ccl', 'Ciclev10012173m.g' => 'ccl', 'Ciclev10021621m.g' => 'ccl', 'Ciclev10028968m.g' => 'ccl', 'Ciclev10029907m.g' => 'ccl', 'CiPaw.01G164800' => 'cil', 'CiPaw.07G083700' => 'cil', 'CiPaw.07G127000' => 'cil', 'CiPaw.07G136900' => 'cil', 'CiPaw.08G081700' => 'cil', 'CiPaw.09G194600' => 'cil', 'CiPaw.10G146500' => 'cil', 'CiPaw.13G091500' => 'cil', 'CiPaw.13G091600' => 'cil', 'ClCG00G003390' => 'cla', 'ClCG01G007220' => 'cla', 'ClCG03G001370' => 'cla', 'ClCG04G008100' => 'cla', 'ClCG06G006110' => 'cla', 'ClCG06G006130' => 'cla', 'ClCG10G021210' => 'cla', 'COL.COLO4_07648' => 'col', 'COL.COLO4_07650' => 'col', 'COL.COLO4_07651' => 'col', 'COL.COLO4_14780' => 'col', 'COL.COLO4_18546' => 'col', 'COL.COLO4_18547' => 'col', 'COL.COLO4_23103' => 'col', 'COL.COLO4_30419' => 'col', 'COL.COLO4_34232' => 'col', 'Cpa.g.sc169.20' => 'cpa', 'Cpa.g.sc57.45' => 'cpa', 'Cpa.g.sc58.124' => 'cpa', 'Cpa.g.sc58.125' => 'cpa', 'Cpa.g.sc81.118' => 'cpa', 'Cpa.g.sc81.119' => 'cpa', 'Cre12.g524700' => 'cre', 'CsaV3_1G034430' => 'csa', 'CsaV3_1G034440' => 'csa', 'CsaV3_1G034450' => 'csa', 'CsaV3_3G034830' => 'csa', 'CsaV3_4G025090' => 'csa', 'CsaV3_5G018660' => 'csa', 'CsaV3_6G038160' => 'csa', 'CSS0003447' => 'camsi', 'CSS0017840' => 'camsi', 'CSS0019260' => 'camsi', 'CSS0040375' => 'camsi', 'CSS0042533' => 'camsi', 'DCAR_005960' => 'dca', 'DCAR_012104' => 'dca', 'DCAR_012105' => 'dca', 'DCAR_012293' => 'dca', 'DCAR_015632' => 'dca', 'DCAR_024602' => 'dca', 'DCAR_028752' => 'dca', 'Dinv06261' => 'din', 'Dinv13982' => 'din', 'Dinv17029' => 'din', 'Dinv18463' => 'din', 'Dinv33181' => 'din', 'Dinv35585' => 'din', 'Dinv37161' => 'din', 'Dinv42977' => 'din', 'Dinv43122' => 'din', 'Dinv44517' => 'din', 'Duzib093G0256' => 'dzi', 'Duzib106G1254' => 'dzi', 'Duzib128G1789' => 'dzi', 'Duzib133G0633' => 'dzi', 'Duzib138G0510' => 'dzi', 'Duzib150G1084' => 'dzi', 'Duzib168G0488' => 'dzi', 'Duzib168G1523' => 'dzi', 'Duzib170G0133' => 'dzi', 'ECA234G1433' => 'eca', 'ECA236G1432' => 'eca', 'ECA236G2256' => 'eca', 'ECA236G2365' => 'eca', 'ECA236G4830' => 'eca', 'ECA248G1505' => 'eca', 'EL10Ac3g06431' => 'bvu', 'EL10Ac5g12577' => 'bvu', 'EL10Ac6g13533' => 'bvu', 'EL10Ac7g16045' => 'bvu', 'Eucgr.A01281' => 'egr', 'Eucgr.B02326' => 'egr', 'Eucgr.H03532' => 'egr', 'Eucgr.K00553' => 'egr', 'Eucgr.K03116' => 'egr', 'FAN02G3963' => 'fan', 'FAN05G0438' => 'fan', 'FAN09G2434' => 'fan', 'FAN12G3984' => 'fan', 'FAN14G0798' => 'fan', 'FAN17G0652' => 'fan', 'FAN19G1988' => 'fan', 'FAN22G0632' => 'fan', 'FAN23G0387' => 'fan', 'FAN26G1323' => 'fan', 'FAN28G0666' => 'fan', 'FvH4_1g26080' => 'fve', 'FvH4_3g36780' => 'fve', 'FvH4_4g15270' => 'fve', 'FvH4_6g13490' => 'fve', 'Glyma.01G098700' => 'gma', 'Glyma.03G065900' => 'gma', 'Glyma.03G073754' => 'gma', 'Glyma.03G073758' => 'gma', 'Glyma.03G083200' => 'gma', 'Glyma.03G225500' => 'gma', 'Glyma.05G037766' => 'gma', 'Glyma.07G133500' => 'gma', 'Glyma.10G139400' => 'gma', 'Glyma.10G248900' => 'gma', 'Glyma.11G137800' => 'gma', 'Glyma.12G061300' => 'gma', 'Glyma.13G337900' => 'gma', 'Glyma.15G036600' => 'gma', 'Glyma.18G182800' => 'gma', 'Glyma.19G222500' => 'gma', 'Glyma.20G144800' => 'gma', 'Gohir.A01G222000' => 'ghi', 'Gohir.A03G044000' => 'ghi', 'Gohir.A03G044100' => 'ghi', 'Gohir.A04G083100' => 'ghi', 'Gohir.A07G127200' => 'ghi', 'Gohir.A07G132400' => 'ghi', 'Gohir.A08G000700' => 'ghi', 'Gohir.A11G327300' => 'ghi', 'Gohir.D01G211500' => 'ghi', 'Gohir.D03G123400' => 'ghi', 'Gohir.D03G123500' => 'ghi', 'Gohir.D04G121800' => 'ghi', 'Gohir.D07G131500' => 'ghi', 'Gohir.D07G136600' => 'ghi', 'Gohir.D08G011600' => 'ghi', 'Gohir.D11G346200' => 'ghi', 'Gorai.001G142800' => 'gra', 'Gorai.001G148700' => 'gra', 'Gorai.002G257300' => 'gra', 'Gorai.003G130000' => 'gra', 'Gorai.003G130100' => 'gra', 'Gorai.004G005300' => 'gra', 'Gorai.007G376500' => 'gra', 'Gorai.012G104700' => 'gra', 'GSVIVG01017946001' => 'vvi', 'GSVIVG01024928001' => 'vvi', 'GSVIVG01028227001' => 'vvi', 'GSVIVG01034151001' => 'vvi', 'HanXRQChr05g0135031' => 'han', 'HanXRQChr05g0135041' => 'han', 'HanXRQChr05g0140021' => 'han', 'HanXRQChr06g0178981' => 'han', 'HanXRQChr07g0188251' => 'han', 'HanXRQChr08g0235311' => 'han', 'HanXRQChr09g0271011' => 'han', 'HanXRQChr10g0293321' => 'han', 'HanXRQChr13g0388171' => 'han', 'Haze_00916' => 'cav', 'Haze_05063' => 'cav', 'Haze_20814' => 'cav', 'Haze_24128' => 'cav', 'Hma1.2p1_0745F.1_g212010' => 'hma', 'Hma1.2p1_0757F.1_g213260' => 'hma', 'Hma1.2p1_0936F.1_g238840' => 'hma', 'Hma1.2p1_1735F.1_g299890' => 'hma', 'Hma1.2p1_1861F.1_g305685' => 'hma', 'HPP92_003397' => 'vpl', 'HPP92_012597' => 'vpl', 'HPP92_015520' => 'vpl', 'HPP92_015539' => 'vpl', 'HPP92_020373' => 'vpl', 'Hund04938' => 'sun', 'Hund10677' => 'sun', 'Hund11033' => 'sun', 'Hund12155' => 'sun', 'Lalb_Chr01g0022551' => 'lal', 'Lalb_Chr03g0042341' => 'lal', 'Lalb_Chr07g0192931' => 'lal', 'Lalb_Chr12g0209551' => 'lal', 'Lalb_Chr19g0125251' => 'lal', 'Lalb_Chr19g0137891' => 'lal', 'Lalb_Chr21g0304641' => 'lal', 'Lalb_Chr21g0309881' => 'lal', 'Lj1A5T12' => 'lonja', 'Lj1C148G10' => 'lonja', 'Lj2A93T83' => 'lonja', 'Lj3A738G68' => 'lonja', 'Lj3C966T1' => 'lonja', 'Lj3g0018958' => 'lja', 'Lj3g0021831' => 'lja', 'Lj3g0025443' => 'lja', 'Lj4g0026809' => 'lja', 'Lj5g0012558' => 'lja', 'Lj5g0021586' => 'lja', 'Lsat_1_v5_gn_5_156840' => 'lsa', 'Lsat_1_v5_gn_8_73460' => 'lsa', 'Lsat_1_v5_gn_8_73481' => 'lsa', 'Lsat_1_v5_gn_9_31601' => 'lsa', 'Lsat_1_v5_gn_9_77320' => 'lsa', 'Manes.01G171300' => 'mes', 'Manes.01G171400' => 'mes', 'Manes.01G236100' => 'mes', 'Manes.02G130500' => 'mes', 'Manes.02G130600' => 'mes', 'Manes.03G180200' => 'mes', 'Manes.05G007000' => 'mes', 'Manes.08G084400' => 'mes', 'Manes.09G092600' => 'mes', 'Manes.15G027900' => 'mes', 'MBI04_g40948_MAGBIO' => 'mbi', 'MBI14_g12123_MAGBIO' => 'mbi', 'MBI18_g28915_MAGBIO' => 'mbi', 'MCO09G053' => 'mco', 'MCO11G782' => 'mco', 'MCO15G215' => 'mco', 'MD03G1088500' => 'mdo', 'MD03G1088600' => 'mdo', 'MD04G1130800' => 'mdo', 'MD09G1291700' => 'mdo', 'MD11G1097500' => 'mdo', 'MD11G1097600' => 'mdo', 'MD12G1143900' => 'mdo', 'MD13G1191400' => 'mdo', 'MD16G1191500' => 'mdo', 'Medtr1g085570' => 'mtr', 'Medtr1g104610' => 'mtr', 'Medtr2g097520' => 'mtr', 'Medtr4g021800' => 'mtr', 'Medtr4g021825' => 'mtr', 'Medtr4g064270' => 'mtr', 'Medtr4g064380' => 'mtr', 'Medtr7g062150' => 'mtr', 'MELO3C003138.2' => 'cme', 'MELO3C005187.2' => 'cme', 'MELO3C009252.2' => 'cme', 'MELO3C014481.2' => 'cme', 'MELO3C020616.2' => 'cme', 'MELO3C020617.2' => 'cme', 'MELO3C020618.2' => 'cme', 'Migut.G00328' => 'egut', 'Migut.J00320' => 'egut', 'Migut.L01000' => 'egut', 'Migut.L01953' => 'egut', 'MSTRG.10253' => 'ama', 'MSTRG.19077' => 'ama', 'MSTRG.26780' => 'ama', 'MSTRG.4023' => 'ama', 'MSTRG.5655' => 'ama', 'MSTRG.9992' => 'ama', 'Nitab4.5_0000043g0310' => 'nta', 'Nitab4.5_0000463g0080' => 'nta', 'Nitab4.5_0000705g0170' => 'nta', 'Nitab4.5_0001326g0060' => 'nta', 'Nitab4.5_0001628g0030' => 'nta', 'Nitab4.5_0002103g0110' => 'nta', 'Nitab4.5_0002946g0030' => 'nta', 'Nitab4.5_0004639g0030' => 'nta', 'Nn2g11149' => 'nnu', 'Nn2g13389' => 'nnu', 'Nn4g25326' => 'nnu', 'Nn4g26290' => 'nnu', 'Nn5g29865' => 'nnu', 'Oeu004163.1' => 'oeu', 'Oeu006901.1' => 'oeu', 'Oeu010096.1' => 'oeu', 'Oeu024340.1' => 'oeu', 'Oeu048369.1' => 'oeu', 'Os01g0973000' => 'osa', 'Os03g0273800' => 'osa', 'Os03g0701200' => 'osa', 'Os03g0834050' => 'osa', 'Os07g0634400' => 'osa', 'Peaxi162Scf00092g01414' => 'pax', 'Peaxi162Scf00165g00818' => 'pax', 'Peaxi162Scf00309g00516' => 'pax', 'Peaxi162Scf00774g00218' => 'pax', 'PGR004G1824' => 'pgr', 'PGR004G2606' => 'pgr', 'PGR031G2716' => 'pgr', 'PGR102G2460' => 'pgr', 'PGR142G2599' => 'pgr', 'PGSC0003DMG400000843' => 'stu', 'PGSC0003DMG400008829' => 'stu', 'PGSC0003DMG400030418' => 'stu', 'PGSC0003DMG400031834' => 'stu', 'PGSC0003DMG401028300' => 'stu', 'PGSC0003DMG402028300' => 'stu', 'Phvul.001G219300' => 'pvu', 'Phvul.007G056000' => 'pvu', 'Phvul.007G208000' => 'pvu', 'Phvul.008G119500' => 'pvu', 'Phvul.010G011200' => 'pvu', 'Phvul.010G014800' => 'pvu', 'Phvul.011G062900' => 'pvu', 'Phvul.L007043' => 'pvu', 'Potri.001G242300' => 'ptr', 'Potri.002G185300' => 'ptr', 'Potri.006G086900' => 'ptr', 'Potri.008G151700' => 'ptr', 'Potri.009G033500' => 'ptr', 'Potri.010G089300' => 'ptr', 'Potri.014G110800' => 'ptr', 'Pp3c27_8130' => 'ppa', 'Pp3c6_27410' => 'ppa', 'PRCOL_00001659' => 'pco', 'PRCOL_00001927' => 'pco', 'PRCOL_00003649' => 'pco', 'Prupe.1G011600' => 'ppe', 'Prupe.3G000800' => 'ppe', 'Prupe.3G001100' => 'ppe', 'Prupe.6G072700' => 'ppe', 'Prupe.6G072800' => 'ppe', 'Prupe.6G257300' => 'ppe', 'Prupe.8G033000' => 'ppe', 'Psat0s2633g0080' => 'psa', 'Psat0s3396g0080' => 'psa', 'Psat0s3396g0200' => 'psa', 'Psat3g139080' => 'psa', 'Psat5g285080' => 'psa', 'Psat6g157760' => 'psa', 'Psat6g208440' => 'psa', 'Psat7g215320' => 'psa', 'Psat7g215400' => 'psa', 'Psat7g235600' => 'psa', 'Psat7g235760' => 'psa', 'PSO063G4603' => 'pso', 'PSO210G0182' => 'pso', 'PSO210G0196' => 'pso', 'PSO339G0394' => 'pso', 'PSO339G4127' => 'pso', 'PSO513G0064' => 'pso', 'PSO761G0079' => 'pso', 'QL01p031003' => 'qlo', 'QL01p031078' => 'qlo', 'QL06p003004' => 'qlo', 'QL07p048731' => 'qlo', 'QL09p037427' => 'qlo', 'RcHm_v2.0_Chr3g0466361' => 'rch', 'RcHm_v2.0_Chr3g0485571' => 'rch', 'RcHm_v2.0_Chr4g0416551' => 'rch', 'RcHm_v2.0_Chr5g0065831' => 'rch', 'Rhsim01G0230500' => 'rsi', 'Rhsim05G0194000' => 'rsi', 'Rhsim08G0250400' => 'rsi', 'Sabra02G0131000' => 'sbr', 'Sabra06G0066300' => 'sbr', 'Sabra08G0115500' => 'sbr', 'Sabra09G0023900' => 'sbr', 'Sabra10G0054000' => 'sbr', 'Sabra14G0081500' => 'sbr', 'Sabra16G0147100' => 'sbr', 'SalBow2G2957' => 'sbo', 'SalBow4G3320' => 'sbo', 'SalBow8G1894' => 'sbo', 'Sc07g0007950' => 'sci', 'Sc12g0001360' => 'sci', 'Sc13g0004330' => 'sci', 'Sc20g0005010' => 'sci', 'Sed0000361' => 'sed', 'Sed0001706' => 'sed', 'Sed0002422' => 'sed', 'Sed0004029' => 'sed', 'Sed0004602' => 'sed', 'Sed0004943' => 'sed', 'Sed0008646' => 'sed', 'Sed0023313' => 'sed', 'Sed0024843' => 'sed', 'SEGI_00081' => 'sgi', 'SEGI_00947' => 'sgi', 'SEGI_04046' => 'sgi', 'SEGI_06880' => 'sgi', 'SEGI_09736' => 'sgi', 'SEGI_12741' => 'sgi', 'SEGI_14530' => 'sgi', 'SEGI_20705' => 'sgi', 'SEGI_26088' => 'sgi', 'SEGI_28323' => 'sgi', 'SEGI_33343' => 'sgi', 'SGA_v2.0_scaffold126G33775' => 'sas', 'SGA_v2.0_scaffold2G01337' => 'sas', 'SGA_v2.0_scaffold38G15006' => 'sas', 'SGA_v2.0_scaffold39G15264' => 'sas', 'SGA_v2.0_scaffold453G51880' => 'sas', 'SHI12696' => 'shi', 'SMO367G1096' => 'smo', 'Solyc01g068630.3' => 'sly', 'Solyc05g011880.3' => 'sly', 'Solyc06g076300.3' => 'sly', 'Solyc09g010940.4' => 'sly', 'Solyc09g075890.3' => 'sly', 'Sopen01g030560' => 'spe', 'Sopen05g006630' => 'spe', 'Sopen06g032720' => 'spe', 'Sopen09g005660' => 'spe', 'Sopen09g030690' => 'spe', 'Sp4g14540' => 'spa', 'Sp4g20030' => 'spa', 'Sp5g01320' => 'spa', 'Sp6g21170' => 'spa', 'Sp6g21180' => 'spa', 'Sp6g21190' => 'spa', 'Sp6g40220' => 'spa', 'TAR362G0122' => 'tar', 'TAR362G1338' => 'tar', 'TAR369G0590' => 'tar', 'TAR371G0824' => 'tar', 'TAR622G1429' => 'tar', 'TAR623G0734' => 'tar', 'TAR625G0441' => 'tar', 'TAR629G0976' => 'tar', 'TAR633G1195' => 'tar', 'TAR636G2660' => 'tar', 'THA.LOC104799440' => 'tha', 'THA.LOC104800966' => 'tha', 'THA.LOC104806559' => 'tha', 'THA.LOC104810765' => 'tha', 'THA.LOC104816266' => 'tha', 'THA.LOC104817419' => 'tha', 'THA.LOC104827021' => 'tha', 'Thecc.01G327400' => 'tca', 'Thecc.04G229200' => 'tca', 'Thecc.05G037400' => 'tca', 'Thecc.09G318600' => 'tca', 'Thecc.09G318700' => 'tca', 'Thhalv10006238m.g' => 'esa', 'Thhalv10014321m.g' => 'esa', 'Thhalv10014335m.g' => 'esa', 'Thhalv10015826m.g' => 'esa', 'Thhalv10017107m.g' => 'esa', 'Thhalv10017180m.g' => 'esa', 'Thhalv10029339m.g' => 'esa', 'TPR.G1699' => 'tpr', 'TPR.G23609' => 'tpr', 'TPR.G3081' => 'tpr', 'TPR.G40397' => 'tpr', 'TPR.G5522' => 'tpr', 'TPR.G5618' => 'tpr', 'TPR.G5626' => 'tpr', 'TWI09G1632' => 'twi', 'TWI23G1230' => 'twi', 'TWI53G1064' => 'twi', 'TWI59G0751' => 'twi', 'TWI74G0947' => 'twi', 'TWI77G0337' => 'twi', 'TWI79G1254' => 'twi', 'unitig_0.g2341' => 'ugi', 'unitig_26.g10006' => 'ugi', 'unitig_26.g10008' => 'ugi', 'unitig_26.g9192' => 'ugi', 'vmacro14547' => 'vma', 'vmacro15333' => 'vma', 'vmacro18743' => 'vma', 'vmacro20166' => 'vma', 'VMungo0331G0523' => 'vmu', 'VMungo0331G1202' => 'vmu', 'VMungo0720G1228' => 'vmu', 'VMungo0720G1514' => 'vmu', 'VMungo1080G0169' => 'vmu', 'VMungo1127G1475' => 'vmu', 'VMungo1383G1208' => 'vmu', 'VMungo1383G1698' => 'vmu', 'Zm00001eb012270' => 'zma', 'Zm00001eb054100' => 'zma', 'Zm00001eb063350' => 'zma', 'Zm00001eb328560' => 'zma', 'Zm00001eb342820' => 'zma', 'Zm00001eb362210' => 'zma', 'Zm00001eb397730' => 'zma', 'Zm00001eb399750' => 'zma' ) $gf_id = 'HOM05D000959' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000959' ) $data_identifier = 'HOM05D000959' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 5, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 5, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 10, 'mbi' => (int) 3, 'mco' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 2, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 3, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 11, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399750' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000959', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '622', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p07100' => 'bna', 'A03p11720' => 'bna', 'A05p08300' => 'bna', 'A05p13380' => 'bna', 'A09p54130' => 'bna', 'A10p16690' => 'bna', 'A10p16700' => 'bna', 'A10p33390' => 'bna', 'Aa31LG10G16020' => 'aar', 'Aa31LG1G11810' => 'aar', 'Aa31LG1G11830' => 'aar', 'Aa31LG1G22510' => 'aar', 'Aa31LG5G4890' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5793' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2310' => 'aag', 'Actinidia08499' => 'ach', 'Actinidia11262' => 'ach', 'Actinidia23926' => 'ach', 'Actinidia34420' => 'ach', 'Actinidia36970' => 'ach', 'Ah.02g111220' => 'amhyb', 'Ah.15g097750' => 'amhyb', 'AL4G27500' => 'aly', 'AL6G11470' => 'aly', 'AL8G35950' => 'aly', 'AL8G35960' => 'aly', 'AL8G35970' => 'aly', 'Aqoxy1G00912' => 'aox', 'Aqoxy2G02253' => 'aox', 'Aqoxy2G02411' => 'aox', 'Aqoxy5G00485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BZ66YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K8ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM4FUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6BF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HFV7XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25JBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0YNNV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MAKK6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P70IT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP2Z6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V61LZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YWP64R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3S9AI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7PGHH' => 'arhy', 'AT2G32150' => 'ath', 'AT3G62040' => 'ath', 'AT5G02230' => 'ath', 'AT5G59480' => 'ath', 'AT5G59490' => 'ath', 'ATR0332G060' => 'atr', 'ATR0559G190' => 'atr', 'ATR0693G294' => 'atr', 'Atru.chr3.3975' => 'acertr', 'Atru.chr3.3976' => 'acertr', 'Atru.chr3.3977' => 'acertr', 'Atru.chr4.2498' => 'acertr', 'Atru.chr5.838' => 'acertr', 'Atru.chr8.1990' => 'acertr', 'Atru.chr8.1991' => 'acertr', 'Atru.chr8.1992' => 'acertr', 'AUR62001759' => 'cqu', 'AUR62009545' => 'cqu', 'AUR62010474' => 'cqu', 'AUR62025820' => 'cqu', 'AUR62030422' => 'cqu', 'AUR62033605' => 'cqu', 'AUR62038615' => 'cqu', 'AUR62041347' => 'cqu', 'BcaB01g04574' => 'bca', 'BcaB02g09263' => 'bca', 'BcaB02g10453' => 'bca', 'BcaB05g22513' => 'bca', 'BcaB08g36253' => 'bca', 'BcaB08g36254' => 'bca', 'BcaC01g06519' => 'bca', 'BcaC02g11889' => 'bca', 'BcaC03g14010' => 'bca', 'BcaC03g18439' => 'bca', 'BcaC04g19765' => 'bca', 'BcaC09g48432' => 'bca', 'BcaNung07302' => 'bca', 'BolC2t06040H' => 'bol', 'BolC2t07346H' => 'bol', 'BolC3t13817H' => 'bol', 'BolC4t22625H' => 'bol', 'BolC4t23297H' => 'bol', 'BolC8t51278H' => 'bol', 'BolC9t58050H' => 'bol', 'BolC9t58051H' => 'bol', 'BolC9t60163H' => 'bol', 'BraA02t04712Z' => 'bra', 'BraA02t05791Z' => 'bra', 'BraA03t10483Z' => 'bra', 'BraA05t19795Z' => 'bra', 'BraA05t20276Z' => 'bra', 'BraA09t40827Z' => 'bra', 'BraA10t43750Z' => 'bra', 'BraA10t43751Z' => 'bra', 'BraA10t45370Z' => 'bra', 'C02p00400' => 'bna', 'C02p12460' => 'bna', 'C03p13680' => 'bna', 'C04p10270' => 'bna', 'C04p17500' => 'bna', 'C08p37010' => 'bna', 'C09p51880' => 'bna', 'C09p51890' => 'bna', 'C09p74300' => 'bna', 'CAN.G179.26' => 'can', 'CAN.G3384.1' => 'can', 'CAN.G394.68' => 'can', 'CAN.G907.13' => 'can', 'CANSAT11G0012' => 'cansat', 'CANSAT25G1586' => 'cansat', 'CANSAT35G0735' => 'cansat', 'CANSAT54G0556' => 'cansat', 'CANSAT64G0356' => 'cansat', 'CANSAT78G2042' => 'cansat', 'CARHR125920' => 'chi', 'CARHR131910' => 'chi', 'CARHR172390' => 'chi', 'CARHR211140' => 'chi', 'CARHR285850' => 'chi', 'CARHR285860' => 'chi', 'Carub.0004s1347' => 'cru', 'Carub.0004s1960' => 'cru', 'Carub.0005s2880' => 'cru', 'Carub.0006s0107' => 'cru', 'Carub.0008s2015' => 'cru', 'Carub.0008s2016' => 'cru', 'Carub.0008s2017' => 'cru', 'Ca_01315_v3' => 'car', 'Ca_05063_v3' => 'car', 'Ca_10231_v3' => 'car', 'Ca_10913_v3' => 'car', 'Ca_19156_v3' => 'car', 'Ca_23644_v3' => 'car', 'Ca_26735_v3' => 'car', 'Cc01_g13130' => 'ccan', 'Cc02_g21690' => 'ccan', 'Cc03_g03600' => 'ccan', 'Cc06_g02510' => 'ccan', 'CDE02G1265' => 'cde', 'CDE05G0415' => 'cde', 'CDE08G1082' => 'cde', 'Cfa005780' => 'cfa', 'Cfa011522' => 'cfa', 'Cfa011523' => 'cfa', 'Cfa015627' => 'cfa', 'Cfa017359' => 'cfa', 'Ciclev10005687m.g' => 'ccl', 'Ciclev10012173m.g' => 'ccl', 'Ciclev10021621m.g' => 'ccl', 'Ciclev10028968m.g' => 'ccl', 'Ciclev10029907m.g' => 'ccl', 'CiPaw.01G164800' => 'cil', 'CiPaw.07G083700' => 'cil', 'CiPaw.07G127000' => 'cil', 'CiPaw.07G136900' => 'cil', 'CiPaw.08G081700' => 'cil', 'CiPaw.09G194600' => 'cil', 'CiPaw.10G146500' => 'cil', 'CiPaw.13G091500' => 'cil', 'CiPaw.13G091600' => 'cil', 'ClCG00G003390' => 'cla', 'ClCG01G007220' => 'cla', 'ClCG03G001370' => 'cla', 'ClCG04G008100' => 'cla', 'ClCG06G006110' => 'cla', 'ClCG06G006130' => 'cla', 'ClCG10G021210' => 'cla', 'COL.COLO4_07648' => 'col', 'COL.COLO4_07650' => 'col', 'COL.COLO4_07651' => 'col', 'COL.COLO4_14780' => 'col', 'COL.COLO4_18546' => 'col', 'COL.COLO4_18547' => 'col', 'COL.COLO4_23103' => 'col', 'COL.COLO4_30419' => 'col', 'COL.COLO4_34232' => 'col', 'Cpa.g.sc169.20' => 'cpa', 'Cpa.g.sc57.45' => 'cpa', 'Cpa.g.sc58.124' => 'cpa', 'Cpa.g.sc58.125' => 'cpa', 'Cpa.g.sc81.118' => 'cpa', 'Cpa.g.sc81.119' => 'cpa', 'Cre12.g524700' => 'cre', 'CsaV3_1G034430' => 'csa', 'CsaV3_1G034440' => 'csa', 'CsaV3_1G034450' => 'csa', 'CsaV3_3G034830' => 'csa', 'CsaV3_4G025090' => 'csa', 'CsaV3_5G018660' => 'csa', 'CsaV3_6G038160' => 'csa', 'CSS0003447' => 'camsi', 'CSS0017840' => 'camsi', 'CSS0019260' => 'camsi', 'CSS0040375' => 'camsi', 'CSS0042533' => 'camsi', 'DCAR_005960' => 'dca', 'DCAR_012104' => 'dca', 'DCAR_012105' => 'dca', 'DCAR_012293' => 'dca', 'DCAR_015632' => 'dca', 'DCAR_024602' => 'dca', 'DCAR_028752' => 'dca', 'Dinv06261' => 'din', 'Dinv13982' => 'din', 'Dinv17029' => 'din', 'Dinv18463' => 'din', 'Dinv33181' => 'din', 'Dinv35585' => 'din', 'Dinv37161' => 'din', 'Dinv42977' => 'din', 'Dinv43122' => 'din', 'Dinv44517' => 'din', 'Duzib093G0256' => 'dzi', 'Duzib106G1254' => 'dzi', 'Duzib128G1789' => 'dzi', 'Duzib133G0633' => 'dzi', 'Duzib138G0510' => 'dzi', 'Duzib150G1084' => 'dzi', 'Duzib168G0488' => 'dzi', 'Duzib168G1523' => 'dzi', 'Duzib170G0133' => 'dzi', 'ECA234G1433' => 'eca', 'ECA236G1432' => 'eca', 'ECA236G2256' => 'eca', 'ECA236G2365' => 'eca', 'ECA236G4830' => 'eca', 'ECA248G1505' => 'eca', 'EL10Ac3g06431' => 'bvu', 'EL10Ac5g12577' => 'bvu', 'EL10Ac6g13533' => 'bvu', 'EL10Ac7g16045' => 'bvu', 'Eucgr.A01281' => 'egr', 'Eucgr.B02326' => 'egr', 'Eucgr.H03532' => 'egr', 'Eucgr.K00553' => 'egr', 'Eucgr.K03116' => 'egr', 'FAN02G3963' => 'fan', 'FAN05G0438' => 'fan', 'FAN09G2434' => 'fan', 'FAN12G3984' => 'fan', 'FAN14G0798' => 'fan', 'FAN17G0652' => 'fan', 'FAN19G1988' => 'fan', 'FAN22G0632' => 'fan', 'FAN23G0387' => 'fan', 'FAN26G1323' => 'fan', 'FAN28G0666' => 'fan', 'FvH4_1g26080' => 'fve', 'FvH4_3g36780' => 'fve', 'FvH4_4g15270' => 'fve', 'FvH4_6g13490' => 'fve', 'Glyma.01G098700' => 'gma', 'Glyma.03G065900' => 'gma', 'Glyma.03G073754' => 'gma', 'Glyma.03G073758' => 'gma', 'Glyma.03G083200' => 'gma', 'Glyma.03G225500' => 'gma', 'Glyma.05G037766' => 'gma', 'Glyma.07G133500' => 'gma', 'Glyma.10G139400' => 'gma', 'Glyma.10G248900' => 'gma', 'Glyma.11G137800' => 'gma', 'Glyma.12G061300' => 'gma', 'Glyma.13G337900' => 'gma', 'Glyma.15G036600' => 'gma', 'Glyma.18G182800' => 'gma', 'Glyma.19G222500' => 'gma', 'Glyma.20G144800' => 'gma', 'Gohir.A01G222000' => 'ghi', 'Gohir.A03G044000' => 'ghi', 'Gohir.A03G044100' => 'ghi', 'Gohir.A04G083100' => 'ghi', 'Gohir.A07G127200' => 'ghi', 'Gohir.A07G132400' => 'ghi', 'Gohir.A08G000700' => 'ghi', 'Gohir.A11G327300' => 'ghi', 'Gohir.D01G211500' => 'ghi', 'Gohir.D03G123400' => 'ghi', 'Gohir.D03G123500' => 'ghi', 'Gohir.D04G121800' => 'ghi', 'Gohir.D07G131500' => 'ghi', 'Gohir.D07G136600' => 'ghi', 'Gohir.D08G011600' => 'ghi', 'Gohir.D11G346200' => 'ghi', 'Gorai.001G142800' => 'gra', 'Gorai.001G148700' => 'gra', 'Gorai.002G257300' => 'gra', 'Gorai.003G130000' => 'gra', 'Gorai.003G130100' => 'gra', 'Gorai.004G005300' => 'gra', 'Gorai.007G376500' => 'gra', 'Gorai.012G104700' => 'gra', 'GSVIVG01017946001' => 'vvi', 'GSVIVG01024928001' => 'vvi', 'GSVIVG01028227001' => 'vvi', 'GSVIVG01034151001' => 'vvi', 'HanXRQChr05g0135031' => 'han', 'HanXRQChr05g0135041' => 'han', 'HanXRQChr05g0140021' => 'han', 'HanXRQChr06g0178981' => 'han', 'HanXRQChr07g0188251' => 'han', 'HanXRQChr08g0235311' => 'han', 'HanXRQChr09g0271011' => 'han', 'HanXRQChr10g0293321' => 'han', 'HanXRQChr13g0388171' => 'han', 'Haze_00916' => 'cav', 'Haze_05063' => 'cav', 'Haze_20814' => 'cav', 'Haze_24128' => 'cav', 'Hma1.2p1_0745F.1_g212010' => 'hma', 'Hma1.2p1_0757F.1_g213260' => 'hma', 'Hma1.2p1_0936F.1_g238840' => 'hma', 'Hma1.2p1_1735F.1_g299890' => 'hma', 'Hma1.2p1_1861F.1_g305685' => 'hma', 'HPP92_003397' => 'vpl', 'HPP92_012597' => 'vpl', 'HPP92_015520' => 'vpl', 'HPP92_015539' => 'vpl', 'HPP92_020373' => 'vpl', 'Hund04938' => 'sun', 'Hund10677' => 'sun', 'Hund11033' => 'sun', 'Hund12155' => 'sun', 'Lalb_Chr01g0022551' => 'lal', 'Lalb_Chr03g0042341' => 'lal', 'Lalb_Chr07g0192931' => 'lal', 'Lalb_Chr12g0209551' => 'lal', 'Lalb_Chr19g0125251' => 'lal', 'Lalb_Chr19g0137891' => 'lal', 'Lalb_Chr21g0304641' => 'lal', 'Lalb_Chr21g0309881' => 'lal', 'Lj1A5T12' => 'lonja', 'Lj1C148G10' => 'lonja', 'Lj2A93T83' => 'lonja', 'Lj3A738G68' => 'lonja', 'Lj3C966T1' => 'lonja', 'Lj3g0018958' => 'lja', 'Lj3g0021831' => 'lja', 'Lj3g0025443' => 'lja', 'Lj4g0026809' => 'lja', 'Lj5g0012558' => 'lja', 'Lj5g0021586' => 'lja', 'Lsat_1_v5_gn_5_156840' => 'lsa', 'Lsat_1_v5_gn_8_73460' => 'lsa', 'Lsat_1_v5_gn_8_73481' => 'lsa', 'Lsat_1_v5_gn_9_31601' => 'lsa', 'Lsat_1_v5_gn_9_77320' => 'lsa', 'Manes.01G171300' => 'mes', 'Manes.01G171400' => 'mes', 'Manes.01G236100' => 'mes', 'Manes.02G130500' => 'mes', 'Manes.02G130600' => 'mes', 'Manes.03G180200' => 'mes', 'Manes.05G007000' => 'mes', 'Manes.08G084400' => 'mes', 'Manes.09G092600' => 'mes', 'Manes.15G027900' => 'mes', 'MBI04_g40948_MAGBIO' => 'mbi', 'MBI14_g12123_MAGBIO' => 'mbi', 'MBI18_g28915_MAGBIO' => 'mbi', 'MCO09G053' => 'mco', 'MCO11G782' => 'mco', 'MCO15G215' => 'mco', 'MD03G1088500' => 'mdo', 'MD03G1088600' => 'mdo', 'MD04G1130800' => 'mdo', 'MD09G1291700' => 'mdo', 'MD11G1097500' => 'mdo', 'MD11G1097600' => 'mdo', 'MD12G1143900' => 'mdo', 'MD13G1191400' => 'mdo', 'MD16G1191500' => 'mdo', 'Medtr1g085570' => 'mtr', 'Medtr1g104610' => 'mtr', 'Medtr2g097520' => 'mtr', 'Medtr4g021800' => 'mtr', 'Medtr4g021825' => 'mtr', 'Medtr4g064270' => 'mtr', 'Medtr4g064380' => 'mtr', 'Medtr7g062150' => 'mtr', 'MELO3C003138.2' => 'cme', 'MELO3C005187.2' => 'cme', 'MELO3C009252.2' => 'cme', 'MELO3C014481.2' => 'cme', 'MELO3C020616.2' => 'cme', 'MELO3C020617.2' => 'cme', 'MELO3C020618.2' => 'cme', 'Migut.G00328' => 'egut', 'Migut.J00320' => 'egut', 'Migut.L01000' => 'egut', 'Migut.L01953' => 'egut', 'MSTRG.10253' => 'ama', 'MSTRG.19077' => 'ama', 'MSTRG.26780' => 'ama', 'MSTRG.4023' => 'ama', 'MSTRG.5655' => 'ama', 'MSTRG.9992' => 'ama', 'Nitab4.5_0000043g0310' => 'nta', 'Nitab4.5_0000463g0080' => 'nta', 'Nitab4.5_0000705g0170' => 'nta', 'Nitab4.5_0001326g0060' => 'nta', 'Nitab4.5_0001628g0030' => 'nta', 'Nitab4.5_0002103g0110' => 'nta', 'Nitab4.5_0002946g0030' => 'nta', 'Nitab4.5_0004639g0030' => 'nta', 'Nn2g11149' => 'nnu', 'Nn2g13389' => 'nnu', 'Nn4g25326' => 'nnu', 'Nn4g26290' => 'nnu', 'Nn5g29865' => 'nnu', 'Oeu004163.1' => 'oeu', 'Oeu006901.1' => 'oeu', 'Oeu010096.1' => 'oeu', 'Oeu024340.1' => 'oeu', 'Oeu048369.1' => 'oeu', 'Os01g0973000' => 'osa', 'Os03g0273800' => 'osa', 'Os03g0701200' => 'osa', 'Os03g0834050' => 'osa', 'Os07g0634400' => 'osa', 'Peaxi162Scf00092g01414' => 'pax', 'Peaxi162Scf00165g00818' => 'pax', 'Peaxi162Scf00309g00516' => 'pax', 'Peaxi162Scf00774g00218' => 'pax', 'PGR004G1824' => 'pgr', 'PGR004G2606' => 'pgr', 'PGR031G2716' => 'pgr', 'PGR102G2460' => 'pgr', 'PGR142G2599' => 'pgr', 'PGSC0003DMG400000843' => 'stu', 'PGSC0003DMG400008829' => 'stu', 'PGSC0003DMG400030418' => 'stu', 'PGSC0003DMG400031834' => 'stu', 'PGSC0003DMG401028300' => 'stu', 'PGSC0003DMG402028300' => 'stu', 'Phvul.001G219300' => 'pvu', 'Phvul.007G056000' => 'pvu', 'Phvul.007G208000' => 'pvu', 'Phvul.008G119500' => 'pvu', 'Phvul.010G011200' => 'pvu', 'Phvul.010G014800' => 'pvu', 'Phvul.011G062900' => 'pvu', 'Phvul.L007043' => 'pvu', 'Potri.001G242300' => 'ptr', 'Potri.002G185300' => 'ptr', 'Potri.006G086900' => 'ptr', 'Potri.008G151700' => 'ptr', 'Potri.009G033500' => 'ptr', 'Potri.010G089300' => 'ptr', 'Potri.014G110800' => 'ptr', 'Pp3c27_8130' => 'ppa', 'Pp3c6_27410' => 'ppa', 'PRCOL_00001659' => 'pco', 'PRCOL_00001927' => 'pco', 'PRCOL_00003649' => 'pco', 'Prupe.1G011600' => 'ppe', 'Prupe.3G000800' => 'ppe', 'Prupe.3G001100' => 'ppe', 'Prupe.6G072700' => 'ppe', 'Prupe.6G072800' => 'ppe', 'Prupe.6G257300' => 'ppe', 'Prupe.8G033000' => 'ppe', 'Psat0s2633g0080' => 'psa', 'Psat0s3396g0080' => 'psa', 'Psat0s3396g0200' => 'psa', 'Psat3g139080' => 'psa', 'Psat5g285080' => 'psa', 'Psat6g157760' => 'psa', 'Psat6g208440' => 'psa', 'Psat7g215320' => 'psa', 'Psat7g215400' => 'psa', 'Psat7g235600' => 'psa', 'Psat7g235760' => 'psa', 'PSO063G4603' => 'pso', 'PSO210G0182' => 'pso', 'PSO210G0196' => 'pso', 'PSO339G0394' => 'pso', 'PSO339G4127' => 'pso', 'PSO513G0064' => 'pso', 'PSO761G0079' => 'pso', 'QL01p031003' => 'qlo', 'QL01p031078' => 'qlo', 'QL06p003004' => 'qlo', 'QL07p048731' => 'qlo', 'QL09p037427' => 'qlo', 'RcHm_v2.0_Chr3g0466361' => 'rch', 'RcHm_v2.0_Chr3g0485571' => 'rch', 'RcHm_v2.0_Chr4g0416551' => 'rch', 'RcHm_v2.0_Chr5g0065831' => 'rch', 'Rhsim01G0230500' => 'rsi', 'Rhsim05G0194000' => 'rsi', 'Rhsim08G0250400' => 'rsi', 'Sabra02G0131000' => 'sbr', 'Sabra06G0066300' => 'sbr', 'Sabra08G0115500' => 'sbr', 'Sabra09G0023900' => 'sbr', 'Sabra10G0054000' => 'sbr', 'Sabra14G0081500' => 'sbr', 'Sabra16G0147100' => 'sbr', 'SalBow2G2957' => 'sbo', 'SalBow4G3320' => 'sbo', 'SalBow8G1894' => 'sbo', 'Sc07g0007950' => 'sci', 'Sc12g0001360' => 'sci', 'Sc13g0004330' => 'sci', 'Sc20g0005010' => 'sci', 'Sed0000361' => 'sed', 'Sed0001706' => 'sed', 'Sed0002422' => 'sed', 'Sed0004029' => 'sed', 'Sed0004602' => 'sed', 'Sed0004943' => 'sed', 'Sed0008646' => 'sed', 'Sed0023313' => 'sed', 'Sed0024843' => 'sed', 'SEGI_00081' => 'sgi', 'SEGI_00947' => 'sgi', 'SEGI_04046' => 'sgi', 'SEGI_06880' => 'sgi', 'SEGI_09736' => 'sgi', 'SEGI_12741' => 'sgi', 'SEGI_14530' => 'sgi', 'SEGI_20705' => 'sgi', 'SEGI_26088' => 'sgi', 'SEGI_28323' => 'sgi', 'SEGI_33343' => 'sgi', 'SGA_v2.0_scaffold126G33775' => 'sas', 'SGA_v2.0_scaffold2G01337' => 'sas', 'SGA_v2.0_scaffold38G15006' => 'sas', 'SGA_v2.0_scaffold39G15264' => 'sas', 'SGA_v2.0_scaffold453G51880' => 'sas', 'SHI12696' => 'shi', 'SMO367G1096' => 'smo', 'Solyc01g068630.3' => 'sly', 'Solyc05g011880.3' => 'sly', 'Solyc06g076300.3' => 'sly', 'Solyc09g010940.4' => 'sly', 'Solyc09g075890.3' => 'sly', 'Sopen01g030560' => 'spe', 'Sopen05g006630' => 'spe', 'Sopen06g032720' => 'spe', 'Sopen09g005660' => 'spe', 'Sopen09g030690' => 'spe', 'Sp4g14540' => 'spa', 'Sp4g20030' => 'spa', 'Sp5g01320' => 'spa', 'Sp6g21170' => 'spa', 'Sp6g21180' => 'spa', 'Sp6g21190' => 'spa', 'Sp6g40220' => 'spa', 'TAR362G0122' => 'tar', 'TAR362G1338' => 'tar', 'TAR369G0590' => 'tar', 'TAR371G0824' => 'tar', 'TAR622G1429' => 'tar', 'TAR623G0734' => 'tar', 'TAR625G0441' => 'tar', 'TAR629G0976' => 'tar', 'TAR633G1195' => 'tar', 'TAR636G2660' => 'tar', 'THA.LOC104799440' => 'tha', 'THA.LOC104800966' => 'tha', 'THA.LOC104806559' => 'tha', 'THA.LOC104810765' => 'tha', 'THA.LOC104816266' => 'tha', 'THA.LOC104817419' => 'tha', 'THA.LOC104827021' => 'tha', 'Thecc.01G327400' => 'tca', 'Thecc.04G229200' => 'tca', 'Thecc.05G037400' => 'tca', 'Thecc.09G318600' => 'tca', 'Thecc.09G318700' => 'tca', 'Thhalv10006238m.g' => 'esa', 'Thhalv10014321m.g' => 'esa', 'Thhalv10014335m.g' => 'esa', 'Thhalv10015826m.g' => 'esa', 'Thhalv10017107m.g' => 'esa', 'Thhalv10017180m.g' => 'esa', 'Thhalv10029339m.g' => 'esa', 'TPR.G1699' => 'tpr', 'TPR.G23609' => 'tpr', 'TPR.G3081' => 'tpr', 'TPR.G40397' => 'tpr', 'TPR.G5522' => 'tpr', 'TPR.G5618' => 'tpr', 'TPR.G5626' => 'tpr', 'TWI09G1632' => 'twi', 'TWI23G1230' => 'twi', 'TWI53G1064' => 'twi', 'TWI59G0751' => 'twi', 'TWI74G0947' => 'twi', 'TWI77G0337' => 'twi', 'TWI79G1254' => 'twi', 'unitig_0.g2341' => 'ugi', 'unitig_26.g10006' => 'ugi', 'unitig_26.g10008' => 'ugi', 'unitig_26.g9192' => 'ugi', 'vmacro14547' => 'vma', 'vmacro15333' => 'vma', 'vmacro18743' => 'vma', 'vmacro20166' => 'vma', 'VMungo0331G0523' => 'vmu', 'VMungo0331G1202' => 'vmu', 'VMungo0720G1228' => 'vmu', 'VMungo0720G1514' => 'vmu', 'VMungo1080G0169' => 'vmu', 'VMungo1127G1475' => 'vmu', 'VMungo1383G1208' => 'vmu', 'VMungo1383G1698' => 'vmu', 'Zm00001eb012270' => 'zma', 'Zm00001eb054100' => 'zma', 'Zm00001eb063350' => 'zma', 'Zm00001eb328560' => 'zma', 'Zm00001eb342820' => 'zma', 'Zm00001eb362210' => 'zma', 'Zm00001eb397730' => 'zma', 'Zm00001eb399750' => 'zma' ), 'gf_id' => 'HOM05D000959', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000959' ), 'data_identifier' => 'HOM05D000959', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000959', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '622', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p07100' => 'bna', 'A03p11720' => 'bna', 'A05p08300' => 'bna', 'A05p13380' => 'bna', 'A09p54130' => 'bna', 'A10p16690' => 'bna', 'A10p16700' => 'bna', 'A10p33390' => 'bna', 'Aa31LG10G16020' => 'aar', 'Aa31LG1G11810' => 'aar', 'Aa31LG1G11830' => 'aar', 'Aa31LG1G22510' => 'aar', 'Aa31LG5G4890' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5793' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2310' => 'aag', 'Actinidia08499' => 'ach', 'Actinidia11262' => 'ach', 'Actinidia23926' => 'ach', 'Actinidia34420' => 'ach', 'Actinidia36970' => 'ach', 'Ah.02g111220' => 'amhyb', 'Ah.15g097750' => 'amhyb', 'AL4G27500' => 'aly', 'AL6G11470' => 'aly', 'AL8G35950' => 'aly', 'AL8G35960' => 'aly', 'AL8G35970' => 'aly', 'Aqoxy1G00912' => 'aox', 'Aqoxy2G02253' => 'aox', 'Aqoxy2G02411' => 'aox', 'Aqoxy5G00485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BZ66YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K8ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM4FUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6BF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HFV7XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25JBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0YNNV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MAKK6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P70IT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP2Z6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V61LZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YWP64R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3S9AI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7PGHH' => 'arhy', 'AT2G32150' => 'ath', 'AT3G62040' => 'ath', 'AT5G02230' => 'ath', 'AT5G59480' => 'ath', 'AT5G59490' => 'ath', 'ATR0332G060' => 'atr', 'ATR0559G190' => 'atr', 'ATR0693G294' => 'atr', 'Atru.chr3.3975' => 'acertr', 'Atru.chr3.3976' => 'acertr', 'Atru.chr3.3977' => 'acertr', 'Atru.chr4.2498' => 'acertr', 'Atru.chr5.838' => 'acertr', 'Atru.chr8.1990' => 'acertr', 'Atru.chr8.1991' => 'acertr', 'Atru.chr8.1992' => 'acertr', 'AUR62001759' => 'cqu', 'AUR62009545' => 'cqu', 'AUR62010474' => 'cqu', 'AUR62025820' => 'cqu', 'AUR62030422' => 'cqu', 'AUR62033605' => 'cqu', 'AUR62038615' => 'cqu', 'AUR62041347' => 'cqu', 'BcaB01g04574' => 'bca', 'BcaB02g09263' => 'bca', 'BcaB02g10453' => 'bca', 'BcaB05g22513' => 'bca', 'BcaB08g36253' => 'bca', 'BcaB08g36254' => 'bca', 'BcaC01g06519' => 'bca', 'BcaC02g11889' => 'bca', 'BcaC03g14010' => 'bca', 'BcaC03g18439' => 'bca', 'BcaC04g19765' => 'bca', 'BcaC09g48432' => 'bca', 'BcaNung07302' => 'bca', 'BolC2t06040H' => 'bol', 'BolC2t07346H' => 'bol', 'BolC3t13817H' => 'bol', 'BolC4t22625H' => 'bol', 'BolC4t23297H' => 'bol', 'BolC8t51278H' => 'bol', 'BolC9t58050H' => 'bol', 'BolC9t58051H' => 'bol', 'BolC9t60163H' => 'bol', 'BraA02t04712Z' => 'bra', 'BraA02t05791Z' => 'bra', 'BraA03t10483Z' => 'bra', 'BraA05t19795Z' => 'bra', 'BraA05t20276Z' => 'bra', 'BraA09t40827Z' => 'bra', 'BraA10t43750Z' => 'bra', 'BraA10t43751Z' => 'bra', 'BraA10t45370Z' => 'bra', 'C02p00400' => 'bna', 'C02p12460' => 'bna', 'C03p13680' => 'bna', 'C04p10270' => 'bna', 'C04p17500' => 'bna', 'C08p37010' => 'bna', 'C09p51880' => 'bna', 'C09p51890' => 'bna', 'C09p74300' => 'bna', 'CAN.G179.26' => 'can', 'CAN.G3384.1' => 'can', 'CAN.G394.68' => 'can', 'CAN.G907.13' => 'can', 'CANSAT11G0012' => 'cansat', 'CANSAT25G1586' => 'cansat', 'CANSAT35G0735' => 'cansat', 'CANSAT54G0556' => 'cansat', 'CANSAT64G0356' => 'cansat', 'CANSAT78G2042' => 'cansat', 'CARHR125920' => 'chi', 'CARHR131910' => 'chi', 'CARHR172390' => 'chi', 'CARHR211140' => 'chi', 'CARHR285850' => 'chi', 'CARHR285860' => 'chi', 'Carub.0004s1347' => 'cru', 'Carub.0004s1960' => 'cru', 'Carub.0005s2880' => 'cru', 'Carub.0006s0107' => 'cru', 'Carub.0008s2015' => 'cru', 'Carub.0008s2016' => 'cru', 'Carub.0008s2017' => 'cru', 'Ca_01315_v3' => 'car', 'Ca_05063_v3' => 'car', 'Ca_10231_v3' => 'car', 'Ca_10913_v3' => 'car', 'Ca_19156_v3' => 'car', 'Ca_23644_v3' => 'car', 'Ca_26735_v3' => 'car', 'Cc01_g13130' => 'ccan', 'Cc02_g21690' => 'ccan', 'Cc03_g03600' => 'ccan', 'Cc06_g02510' => 'ccan', 'CDE02G1265' => 'cde', 'CDE05G0415' => 'cde', 'CDE08G1082' => 'cde', 'Cfa005780' => 'cfa', 'Cfa011522' => 'cfa', 'Cfa011523' => 'cfa', 'Cfa015627' => 'cfa', 'Cfa017359' => 'cfa', 'Ciclev10005687m.g' => 'ccl', 'Ciclev10012173m.g' => 'ccl', 'Ciclev10021621m.g' => 'ccl', 'Ciclev10028968m.g' => 'ccl', 'Ciclev10029907m.g' => 'ccl', 'CiPaw.01G164800' => 'cil', 'CiPaw.07G083700' => 'cil', 'CiPaw.07G127000' => 'cil', 'CiPaw.07G136900' => 'cil', 'CiPaw.08G081700' => 'cil', 'CiPaw.09G194600' => 'cil', 'CiPaw.10G146500' => 'cil', 'CiPaw.13G091500' => 'cil', 'CiPaw.13G091600' => 'cil', 'ClCG00G003390' => 'cla', 'ClCG01G007220' => 'cla', 'ClCG03G001370' => 'cla', 'ClCG04G008100' => 'cla', 'ClCG06G006110' => 'cla', 'ClCG06G006130' => 'cla', 'ClCG10G021210' => 'cla', 'COL.COLO4_07648' => 'col', 'COL.COLO4_07650' => 'col', 'COL.COLO4_07651' => 'col', 'COL.COLO4_14780' => 'col', 'COL.COLO4_18546' => 'col', 'COL.COLO4_18547' => 'col', 'COL.COLO4_23103' => 'col', 'COL.COLO4_30419' => 'col', 'COL.COLO4_34232' => 'col', 'Cpa.g.sc169.20' => 'cpa', 'Cpa.g.sc57.45' => 'cpa', 'Cpa.g.sc58.124' => 'cpa', 'Cpa.g.sc58.125' => 'cpa', 'Cpa.g.sc81.118' => 'cpa', 'Cpa.g.sc81.119' => 'cpa', 'Cre12.g524700' => 'cre', 'CsaV3_1G034430' => 'csa', 'CsaV3_1G034440' => 'csa', 'CsaV3_1G034450' => 'csa', 'CsaV3_3G034830' => 'csa', 'CsaV3_4G025090' => 'csa', 'CsaV3_5G018660' => 'csa', 'CsaV3_6G038160' => 'csa', 'CSS0003447' => 'camsi', 'CSS0017840' => 'camsi', 'CSS0019260' => 'camsi', 'CSS0040375' => 'camsi', 'CSS0042533' => 'camsi', 'DCAR_005960' => 'dca', 'DCAR_012104' => 'dca', 'DCAR_012105' => 'dca', 'DCAR_012293' => 'dca', 'DCAR_015632' => 'dca', 'DCAR_024602' => 'dca', 'DCAR_028752' => 'dca', 'Dinv06261' => 'din', 'Dinv13982' => 'din', 'Dinv17029' => 'din', 'Dinv18463' => 'din', 'Dinv33181' => 'din', 'Dinv35585' => 'din', 'Dinv37161' => 'din', 'Dinv42977' => 'din', 'Dinv43122' => 'din', 'Dinv44517' => 'din', 'Duzib093G0256' => 'dzi', 'Duzib106G1254' => 'dzi', 'Duzib128G1789' => 'dzi', 'Duzib133G0633' => 'dzi', 'Duzib138G0510' => 'dzi', 'Duzib150G1084' => 'dzi', 'Duzib168G0488' => 'dzi', 'Duzib168G1523' => 'dzi', 'Duzib170G0133' => 'dzi', 'ECA234G1433' => 'eca', 'ECA236G1432' => 'eca', 'ECA236G2256' => 'eca', 'ECA236G2365' => 'eca', 'ECA236G4830' => 'eca', 'ECA248G1505' => 'eca', 'EL10Ac3g06431' => 'bvu', 'EL10Ac5g12577' => 'bvu', 'EL10Ac6g13533' => 'bvu', 'EL10Ac7g16045' => 'bvu', 'Eucgr.A01281' => 'egr', 'Eucgr.B02326' => 'egr', 'Eucgr.H03532' => 'egr', 'Eucgr.K00553' => 'egr', 'Eucgr.K03116' => 'egr', 'FAN02G3963' => 'fan', 'FAN05G0438' => 'fan', 'FAN09G2434' => 'fan', 'FAN12G3984' => 'fan', 'FAN14G0798' => 'fan', 'FAN17G0652' => 'fan', 'FAN19G1988' => 'fan', 'FAN22G0632' => 'fan', 'FAN23G0387' => 'fan', 'FAN26G1323' => 'fan', 'FAN28G0666' => 'fan', 'FvH4_1g26080' => 'fve', 'FvH4_3g36780' => 'fve', 'FvH4_4g15270' => 'fve', 'FvH4_6g13490' => 'fve', 'Glyma.01G098700' => 'gma', 'Glyma.03G065900' => 'gma', 'Glyma.03G073754' => 'gma', 'Glyma.03G073758' => 'gma', 'Glyma.03G083200' => 'gma', 'Glyma.03G225500' => 'gma', 'Glyma.05G037766' => 'gma', 'Glyma.07G133500' => 'gma', 'Glyma.10G139400' => 'gma', 'Glyma.10G248900' => 'gma', 'Glyma.11G137800' => 'gma', 'Glyma.12G061300' => 'gma', 'Glyma.13G337900' => 'gma', 'Glyma.15G036600' => 'gma', 'Glyma.18G182800' => 'gma', 'Glyma.19G222500' => 'gma', 'Glyma.20G144800' => 'gma', 'Gohir.A01G222000' => 'ghi', 'Gohir.A03G044000' => 'ghi', 'Gohir.A03G044100' => 'ghi', 'Gohir.A04G083100' => 'ghi', 'Gohir.A07G127200' => 'ghi', 'Gohir.A07G132400' => 'ghi', 'Gohir.A08G000700' => 'ghi', 'Gohir.A11G327300' => 'ghi', 'Gohir.D01G211500' => 'ghi', 'Gohir.D03G123400' => 'ghi', 'Gohir.D03G123500' => 'ghi', 'Gohir.D04G121800' => 'ghi', 'Gohir.D07G131500' => 'ghi', 'Gohir.D07G136600' => 'ghi', 'Gohir.D08G011600' => 'ghi', 'Gohir.D11G346200' => 'ghi', 'Gorai.001G142800' => 'gra', 'Gorai.001G148700' => 'gra', 'Gorai.002G257300' => 'gra', 'Gorai.003G130000' => 'gra', 'Gorai.003G130100' => 'gra', 'Gorai.004G005300' => 'gra', 'Gorai.007G376500' => 'gra', 'Gorai.012G104700' => 'gra', 'GSVIVG01017946001' => 'vvi', 'GSVIVG01024928001' => 'vvi', 'GSVIVG01028227001' => 'vvi', 'GSVIVG01034151001' => 'vvi', 'HanXRQChr05g0135031' => 'han', 'HanXRQChr05g0135041' => 'han', 'HanXRQChr05g0140021' => 'han', 'HanXRQChr06g0178981' => 'han', 'HanXRQChr07g0188251' => 'han', 'HanXRQChr08g0235311' => 'han', 'HanXRQChr09g0271011' => 'han', 'HanXRQChr10g0293321' => 'han', 'HanXRQChr13g0388171' => 'han', 'Haze_00916' => 'cav', 'Haze_05063' => 'cav', 'Haze_20814' => 'cav', 'Haze_24128' => 'cav', 'Hma1.2p1_0745F.1_g212010' => 'hma', 'Hma1.2p1_0757F.1_g213260' => 'hma', 'Hma1.2p1_0936F.1_g238840' => 'hma', 'Hma1.2p1_1735F.1_g299890' => 'hma', 'Hma1.2p1_1861F.1_g305685' => 'hma', 'HPP92_003397' => 'vpl', 'HPP92_012597' => 'vpl', 'HPP92_015520' => 'vpl', 'HPP92_015539' => 'vpl', 'HPP92_020373' => 'vpl', 'Hund04938' => 'sun', 'Hund10677' => 'sun', 'Hund11033' => 'sun', 'Hund12155' => 'sun', 'Lalb_Chr01g0022551' => 'lal', 'Lalb_Chr03g0042341' => 'lal', 'Lalb_Chr07g0192931' => 'lal', 'Lalb_Chr12g0209551' => 'lal', 'Lalb_Chr19g0125251' => 'lal', 'Lalb_Chr19g0137891' => 'lal', 'Lalb_Chr21g0304641' => 'lal', 'Lalb_Chr21g0309881' => 'lal', 'Lj1A5T12' => 'lonja', 'Lj1C148G10' => 'lonja', 'Lj2A93T83' => 'lonja', 'Lj3A738G68' => 'lonja', 'Lj3C966T1' => 'lonja', 'Lj3g0018958' => 'lja', 'Lj3g0021831' => 'lja', 'Lj3g0025443' => 'lja', 'Lj4g0026809' => 'lja', 'Lj5g0012558' => 'lja', 'Lj5g0021586' => 'lja', 'Lsat_1_v5_gn_5_156840' => 'lsa', 'Lsat_1_v5_gn_8_73460' => 'lsa', 'Lsat_1_v5_gn_8_73481' => 'lsa', 'Lsat_1_v5_gn_9_31601' => 'lsa', 'Lsat_1_v5_gn_9_77320' => 'lsa', 'Manes.01G171300' => 'mes', 'Manes.01G171400' => 'mes', 'Manes.01G236100' => 'mes', 'Manes.02G130500' => 'mes', 'Manes.02G130600' => 'mes', 'Manes.03G180200' => 'mes', 'Manes.05G007000' => 'mes', 'Manes.08G084400' => 'mes', 'Manes.09G092600' => 'mes', 'Manes.15G027900' => 'mes', 'MBI04_g40948_MAGBIO' => 'mbi', 'MBI14_g12123_MAGBIO' => 'mbi', 'MBI18_g28915_MAGBIO' => 'mbi', 'MCO09G053' => 'mco', 'MCO11G782' => 'mco', 'MCO15G215' => 'mco', 'MD03G1088500' => 'mdo', 'MD03G1088600' => 'mdo', 'MD04G1130800' => 'mdo', 'MD09G1291700' => 'mdo', 'MD11G1097500' => 'mdo', 'MD11G1097600' => 'mdo', 'MD12G1143900' => 'mdo', 'MD13G1191400' => 'mdo', 'MD16G1191500' => 'mdo', 'Medtr1g085570' => 'mtr', 'Medtr1g104610' => 'mtr', 'Medtr2g097520' => 'mtr', 'Medtr4g021800' => 'mtr', 'Medtr4g021825' => 'mtr', 'Medtr4g064270' => 'mtr', 'Medtr4g064380' => 'mtr', 'Medtr7g062150' => 'mtr', 'MELO3C003138.2' => 'cme', 'MELO3C005187.2' => 'cme', 'MELO3C009252.2' => 'cme', 'MELO3C014481.2' => 'cme', 'MELO3C020616.2' => 'cme', 'MELO3C020617.2' => 'cme', 'MELO3C020618.2' => 'cme', 'Migut.G00328' => 'egut', 'Migut.J00320' => 'egut', 'Migut.L01000' => 'egut', 'Migut.L01953' => 'egut', 'MSTRG.10253' => 'ama', 'MSTRG.19077' => 'ama', 'MSTRG.26780' => 'ama', 'MSTRG.4023' => 'ama', 'MSTRG.5655' => 'ama', 'MSTRG.9992' => 'ama', 'Nitab4.5_0000043g0310' => 'nta', 'Nitab4.5_0000463g0080' => 'nta', 'Nitab4.5_0000705g0170' => 'nta', 'Nitab4.5_0001326g0060' => 'nta', 'Nitab4.5_0001628g0030' => 'nta', 'Nitab4.5_0002103g0110' => 'nta', 'Nitab4.5_0002946g0030' => 'nta', 'Nitab4.5_0004639g0030' => 'nta', 'Nn2g11149' => 'nnu', 'Nn2g13389' => 'nnu', 'Nn4g25326' => 'nnu', 'Nn4g26290' => 'nnu', 'Nn5g29865' => 'nnu', 'Oeu004163.1' => 'oeu', 'Oeu006901.1' => 'oeu', 'Oeu010096.1' => 'oeu', 'Oeu024340.1' => 'oeu', 'Oeu048369.1' => 'oeu', 'Os01g0973000' => 'osa', 'Os03g0273800' => 'osa', 'Os03g0701200' => 'osa', 'Os03g0834050' => 'osa', 'Os07g0634400' => 'osa', 'Peaxi162Scf00092g01414' => 'pax', 'Peaxi162Scf00165g00818' => 'pax', 'Peaxi162Scf00309g00516' => 'pax', 'Peaxi162Scf00774g00218' => 'pax', 'PGR004G1824' => 'pgr', 'PGR004G2606' => 'pgr', 'PGR031G2716' => 'pgr', 'PGR102G2460' => 'pgr', 'PGR142G2599' => 'pgr', 'PGSC0003DMG400000843' => 'stu', 'PGSC0003DMG400008829' => 'stu', 'PGSC0003DMG400030418' => 'stu', 'PGSC0003DMG400031834' => 'stu', 'PGSC0003DMG401028300' => 'stu', 'PGSC0003DMG402028300' => 'stu', 'Phvul.001G219300' => 'pvu', 'Phvul.007G056000' => 'pvu', 'Phvul.007G208000' => 'pvu', 'Phvul.008G119500' => 'pvu', 'Phvul.010G011200' => 'pvu', 'Phvul.010G014800' => 'pvu', 'Phvul.011G062900' => 'pvu', 'Phvul.L007043' => 'pvu', 'Potri.001G242300' => 'ptr', 'Potri.002G185300' => 'ptr', 'Potri.006G086900' => 'ptr', 'Potri.008G151700' => 'ptr', 'Potri.009G033500' => 'ptr', 'Potri.010G089300' => 'ptr', 'Potri.014G110800' => 'ptr', 'Pp3c27_8130' => 'ppa', 'Pp3c6_27410' => 'ppa', 'PRCOL_00001659' => 'pco', 'PRCOL_00001927' => 'pco', 'PRCOL_00003649' => 'pco', 'Prupe.1G011600' => 'ppe', 'Prupe.3G000800' => 'ppe', 'Prupe.3G001100' => 'ppe', 'Prupe.6G072700' => 'ppe', 'Prupe.6G072800' => 'ppe', 'Prupe.6G257300' => 'ppe', 'Prupe.8G033000' => 'ppe', 'Psat0s2633g0080' => 'psa', 'Psat0s3396g0080' => 'psa', 'Psat0s3396g0200' => 'psa', 'Psat3g139080' => 'psa', 'Psat5g285080' => 'psa', 'Psat6g157760' => 'psa', 'Psat6g208440' => 'psa', 'Psat7g215320' => 'psa', 'Psat7g215400' => 'psa', 'Psat7g235600' => 'psa', 'Psat7g235760' => 'psa', 'PSO063G4603' => 'pso', 'PSO210G0182' => 'pso', 'PSO210G0196' => 'pso', 'PSO339G0394' => 'pso', 'PSO339G4127' => 'pso', 'PSO513G0064' => 'pso', 'PSO761G0079' => 'pso', 'QL01p031003' => 'qlo', 'QL01p031078' => 'qlo', 'QL06p003004' => 'qlo', 'QL07p048731' => 'qlo', 'QL09p037427' => 'qlo', 'RcHm_v2.0_Chr3g0466361' => 'rch', 'RcHm_v2.0_Chr3g0485571' => 'rch', 'RcHm_v2.0_Chr4g0416551' => 'rch', 'RcHm_v2.0_Chr5g0065831' => 'rch', 'Rhsim01G0230500' => 'rsi', 'Rhsim05G0194000' => 'rsi', 'Rhsim08G0250400' => 'rsi', 'Sabra02G0131000' => 'sbr', 'Sabra06G0066300' => 'sbr', 'Sabra08G0115500' => 'sbr', 'Sabra09G0023900' => 'sbr', 'Sabra10G0054000' => 'sbr', 'Sabra14G0081500' => 'sbr', 'Sabra16G0147100' => 'sbr', 'SalBow2G2957' => 'sbo', 'SalBow4G3320' => 'sbo', 'SalBow8G1894' => 'sbo', 'Sc07g0007950' => 'sci', 'Sc12g0001360' => 'sci', 'Sc13g0004330' => 'sci', 'Sc20g0005010' => 'sci', 'Sed0000361' => 'sed', 'Sed0001706' => 'sed', 'Sed0002422' => 'sed', 'Sed0004029' => 'sed', 'Sed0004602' => 'sed', 'Sed0004943' => 'sed', 'Sed0008646' => 'sed', 'Sed0023313' => 'sed', 'Sed0024843' => 'sed', 'SEGI_00081' => 'sgi', 'SEGI_00947' => 'sgi', 'SEGI_04046' => 'sgi', 'SEGI_06880' => 'sgi', 'SEGI_09736' => 'sgi', 'SEGI_12741' => 'sgi', 'SEGI_14530' => 'sgi', 'SEGI_20705' => 'sgi', 'SEGI_26088' => 'sgi', 'SEGI_28323' => 'sgi', 'SEGI_33343' => 'sgi', 'SGA_v2.0_scaffold126G33775' => 'sas', 'SGA_v2.0_scaffold2G01337' => 'sas', 'SGA_v2.0_scaffold38G15006' => 'sas', 'SGA_v2.0_scaffold39G15264' => 'sas', 'SGA_v2.0_scaffold453G51880' => 'sas', 'SHI12696' => 'shi', 'SMO367G1096' => 'smo', 'Solyc01g068630.3' => 'sly', 'Solyc05g011880.3' => 'sly', 'Solyc06g076300.3' => 'sly', 'Solyc09g010940.4' => 'sly', 'Solyc09g075890.3' => 'sly', 'Sopen01g030560' => 'spe', 'Sopen05g006630' => 'spe', 'Sopen06g032720' => 'spe', 'Sopen09g005660' => 'spe', 'Sopen09g030690' => 'spe', 'Sp4g14540' => 'spa', 'Sp4g20030' => 'spa', 'Sp5g01320' => 'spa', 'Sp6g21170' => 'spa', 'Sp6g21180' => 'spa', 'Sp6g21190' => 'spa', 'Sp6g40220' => 'spa', 'TAR362G0122' => 'tar', 'TAR362G1338' => 'tar', 'TAR369G0590' => 'tar', 'TAR371G0824' => 'tar', 'TAR622G1429' => 'tar', 'TAR623G0734' => 'tar', 'TAR625G0441' => 'tar', 'TAR629G0976' => 'tar', 'TAR633G1195' => 'tar', 'TAR636G2660' => 'tar', 'THA.LOC104799440' => 'tha', 'THA.LOC104800966' => 'tha', 'THA.LOC104806559' => 'tha', 'THA.LOC104810765' => 'tha', 'THA.LOC104816266' => 'tha', 'THA.LOC104817419' => 'tha', 'THA.LOC104827021' => 'tha', 'Thecc.01G327400' => 'tca', 'Thecc.04G229200' => 'tca', 'Thecc.05G037400' => 'tca', 'Thecc.09G318600' => 'tca', 'Thecc.09G318700' => 'tca', 'Thhalv10006238m.g' => 'esa', 'Thhalv10014321m.g' => 'esa', 'Thhalv10014335m.g' => 'esa', 'Thhalv10015826m.g' => 'esa', 'Thhalv10017107m.g' => 'esa', 'Thhalv10017180m.g' => 'esa', 'Thhalv10029339m.g' => 'esa', 'TPR.G1699' => 'tpr', 'TPR.G23609' => 'tpr', 'TPR.G3081' => 'tpr', 'TPR.G40397' => 'tpr', 'TPR.G5522' => 'tpr', 'TPR.G5618' => 'tpr', 'TPR.G5626' => 'tpr', 'TWI09G1632' => 'twi', 'TWI23G1230' => 'twi', 'TWI53G1064' => 'twi', 'TWI59G0751' => 'twi', 'TWI74G0947' => 'twi', 'TWI77G0337' => 'twi', 'TWI79G1254' => 'twi', 'unitig_0.g2341' => 'ugi', 'unitig_26.g10006' => 'ugi', 'unitig_26.g10008' => 'ugi', 'unitig_26.g9192' => 'ugi', 'vmacro14547' => 'vma', 'vmacro15333' => 'vma', 'vmacro18743' => 'vma', 'vmacro20166' => 'vma', 'VMungo0331G0523' => 'vmu', 'VMungo0331G1202' => 'vmu', 'VMungo0720G1228' => 'vmu', 'VMungo0720G1514' => 'vmu', 'VMungo1080G0169' => 'vmu', 'VMungo1127G1475' => 'vmu', 'VMungo1383G1208' => 'vmu', 'VMungo1383G1698' => 'vmu', 'Zm00001eb012270' => 'zma', 'Zm00001eb054100' => 'zma', 'Zm00001eb063350' => 'zma', 'Zm00001eb328560' => 'zma', 'Zm00001eb342820' => 'zma', 'Zm00001eb362210' => 'zma', 'Zm00001eb397730' => 'zma', 'Zm00001eb399750' => 'zma' ) $gf_id = 'HOM05D000959' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000959' ) $data_identifier = 'HOM05D000959' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 5, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 5, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 10, 'mbi' => (int) 3, 'mco' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 2, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 3, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 11, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399750' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000959', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '622', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p07100' => 'bna', 'A03p11720' => 'bna', 'A05p08300' => 'bna', 'A05p13380' => 'bna', 'A09p54130' => 'bna', 'A10p16690' => 'bna', 'A10p16700' => 'bna', 'A10p33390' => 'bna', 'Aa31LG10G16020' => 'aar', 'Aa31LG1G11810' => 'aar', 'Aa31LG1G11830' => 'aar', 'Aa31LG1G22510' => 'aar', 'Aa31LG5G4890' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5793' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2310' => 'aag', 'Actinidia08499' => 'ach', 'Actinidia11262' => 'ach', 'Actinidia23926' => 'ach', 'Actinidia34420' => 'ach', 'Actinidia36970' => 'ach', 'Ah.02g111220' => 'amhyb', 'Ah.15g097750' => 'amhyb', 'AL4G27500' => 'aly', 'AL6G11470' => 'aly', 'AL8G35950' => 'aly', 'AL8G35960' => 'aly', 'AL8G35970' => 'aly', 'Aqoxy1G00912' => 'aox', 'Aqoxy2G02253' => 'aox', 'Aqoxy2G02411' => 'aox', 'Aqoxy5G00485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BZ66YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K8ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM4FUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6BF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HFV7XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25JBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0YNNV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MAKK6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P70IT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP2Z6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V61LZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YWP64R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3S9AI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7PGHH' => 'arhy', 'AT2G32150' => 'ath', 'AT3G62040' => 'ath', 'AT5G02230' => 'ath', 'AT5G59480' => 'ath', 'AT5G59490' => 'ath', 'ATR0332G060' => 'atr', 'ATR0559G190' => 'atr', 'ATR0693G294' => 'atr', 'Atru.chr3.3975' => 'acertr', 'Atru.chr3.3976' => 'acertr', 'Atru.chr3.3977' => 'acertr', 'Atru.chr4.2498' => 'acertr', 'Atru.chr5.838' => 'acertr', 'Atru.chr8.1990' => 'acertr', 'Atru.chr8.1991' => 'acertr', 'Atru.chr8.1992' => 'acertr', 'AUR62001759' => 'cqu', 'AUR62009545' => 'cqu', 'AUR62010474' => 'cqu', 'AUR62025820' => 'cqu', 'AUR62030422' => 'cqu', 'AUR62033605' => 'cqu', 'AUR62038615' => 'cqu', 'AUR62041347' => 'cqu', 'BcaB01g04574' => 'bca', 'BcaB02g09263' => 'bca', 'BcaB02g10453' => 'bca', 'BcaB05g22513' => 'bca', 'BcaB08g36253' => 'bca', 'BcaB08g36254' => 'bca', 'BcaC01g06519' => 'bca', 'BcaC02g11889' => 'bca', 'BcaC03g14010' => 'bca', 'BcaC03g18439' => 'bca', 'BcaC04g19765' => 'bca', 'BcaC09g48432' => 'bca', 'BcaNung07302' => 'bca', 'BolC2t06040H' => 'bol', 'BolC2t07346H' => 'bol', 'BolC3t13817H' => 'bol', 'BolC4t22625H' => 'bol', 'BolC4t23297H' => 'bol', 'BolC8t51278H' => 'bol', 'BolC9t58050H' => 'bol', 'BolC9t58051H' => 'bol', 'BolC9t60163H' => 'bol', 'BraA02t04712Z' => 'bra', 'BraA02t05791Z' => 'bra', 'BraA03t10483Z' => 'bra', 'BraA05t19795Z' => 'bra', 'BraA05t20276Z' => 'bra', 'BraA09t40827Z' => 'bra', 'BraA10t43750Z' => 'bra', 'BraA10t43751Z' => 'bra', 'BraA10t45370Z' => 'bra', 'C02p00400' => 'bna', 'C02p12460' => 'bna', 'C03p13680' => 'bna', 'C04p10270' => 'bna', 'C04p17500' => 'bna', 'C08p37010' => 'bna', 'C09p51880' => 'bna', 'C09p51890' => 'bna', 'C09p74300' => 'bna', 'CAN.G179.26' => 'can', 'CAN.G3384.1' => 'can', 'CAN.G394.68' => 'can', 'CAN.G907.13' => 'can', 'CANSAT11G0012' => 'cansat', 'CANSAT25G1586' => 'cansat', 'CANSAT35G0735' => 'cansat', 'CANSAT54G0556' => 'cansat', 'CANSAT64G0356' => 'cansat', 'CANSAT78G2042' => 'cansat', 'CARHR125920' => 'chi', 'CARHR131910' => 'chi', 'CARHR172390' => 'chi', 'CARHR211140' => 'chi', 'CARHR285850' => 'chi', 'CARHR285860' => 'chi', 'Carub.0004s1347' => 'cru', 'Carub.0004s1960' => 'cru', 'Carub.0005s2880' => 'cru', 'Carub.0006s0107' => 'cru', 'Carub.0008s2015' => 'cru', 'Carub.0008s2016' => 'cru', 'Carub.0008s2017' => 'cru', 'Ca_01315_v3' => 'car', 'Ca_05063_v3' => 'car', 'Ca_10231_v3' => 'car', 'Ca_10913_v3' => 'car', 'Ca_19156_v3' => 'car', 'Ca_23644_v3' => 'car', 'Ca_26735_v3' => 'car', 'Cc01_g13130' => 'ccan', 'Cc02_g21690' => 'ccan', 'Cc03_g03600' => 'ccan', 'Cc06_g02510' => 'ccan', 'CDE02G1265' => 'cde', 'CDE05G0415' => 'cde', 'CDE08G1082' => 'cde', 'Cfa005780' => 'cfa', 'Cfa011522' => 'cfa', 'Cfa011523' => 'cfa', 'Cfa015627' => 'cfa', 'Cfa017359' => 'cfa', 'Ciclev10005687m.g' => 'ccl', 'Ciclev10012173m.g' => 'ccl', 'Ciclev10021621m.g' => 'ccl', 'Ciclev10028968m.g' => 'ccl', 'Ciclev10029907m.g' => 'ccl', 'CiPaw.01G164800' => 'cil', 'CiPaw.07G083700' => 'cil', 'CiPaw.07G127000' => 'cil', 'CiPaw.07G136900' => 'cil', 'CiPaw.08G081700' => 'cil', 'CiPaw.09G194600' => 'cil', 'CiPaw.10G146500' => 'cil', 'CiPaw.13G091500' => 'cil', 'CiPaw.13G091600' => 'cil', 'ClCG00G003390' => 'cla', 'ClCG01G007220' => 'cla', 'ClCG03G001370' => 'cla', 'ClCG04G008100' => 'cla', 'ClCG06G006110' => 'cla', 'ClCG06G006130' => 'cla', 'ClCG10G021210' => 'cla', 'COL.COLO4_07648' => 'col', 'COL.COLO4_07650' => 'col', 'COL.COLO4_07651' => 'col', 'COL.COLO4_14780' => 'col', 'COL.COLO4_18546' => 'col', 'COL.COLO4_18547' => 'col', 'COL.COLO4_23103' => 'col', 'COL.COLO4_30419' => 'col', 'COL.COLO4_34232' => 'col', 'Cpa.g.sc169.20' => 'cpa', 'Cpa.g.sc57.45' => 'cpa', 'Cpa.g.sc58.124' => 'cpa', 'Cpa.g.sc58.125' => 'cpa', 'Cpa.g.sc81.118' => 'cpa', 'Cpa.g.sc81.119' => 'cpa', 'Cre12.g524700' => 'cre', 'CsaV3_1G034430' => 'csa', 'CsaV3_1G034440' => 'csa', 'CsaV3_1G034450' => 'csa', 'CsaV3_3G034830' => 'csa', 'CsaV3_4G025090' => 'csa', 'CsaV3_5G018660' => 'csa', 'CsaV3_6G038160' => 'csa', 'CSS0003447' => 'camsi', 'CSS0017840' => 'camsi', 'CSS0019260' => 'camsi', 'CSS0040375' => 'camsi', 'CSS0042533' => 'camsi', 'DCAR_005960' => 'dca', 'DCAR_012104' => 'dca', 'DCAR_012105' => 'dca', 'DCAR_012293' => 'dca', 'DCAR_015632' => 'dca', 'DCAR_024602' => 'dca', 'DCAR_028752' => 'dca', 'Dinv06261' => 'din', 'Dinv13982' => 'din', 'Dinv17029' => 'din', 'Dinv18463' => 'din', 'Dinv33181' => 'din', 'Dinv35585' => 'din', 'Dinv37161' => 'din', 'Dinv42977' => 'din', 'Dinv43122' => 'din', 'Dinv44517' => 'din', 'Duzib093G0256' => 'dzi', 'Duzib106G1254' => 'dzi', 'Duzib128G1789' => 'dzi', 'Duzib133G0633' => 'dzi', 'Duzib138G0510' => 'dzi', 'Duzib150G1084' => 'dzi', 'Duzib168G0488' => 'dzi', 'Duzib168G1523' => 'dzi', 'Duzib170G0133' => 'dzi', 'ECA234G1433' => 'eca', 'ECA236G1432' => 'eca', 'ECA236G2256' => 'eca', 'ECA236G2365' => 'eca', 'ECA236G4830' => 'eca', 'ECA248G1505' => 'eca', 'EL10Ac3g06431' => 'bvu', 'EL10Ac5g12577' => 'bvu', 'EL10Ac6g13533' => 'bvu', 'EL10Ac7g16045' => 'bvu', 'Eucgr.A01281' => 'egr', 'Eucgr.B02326' => 'egr', 'Eucgr.H03532' => 'egr', 'Eucgr.K00553' => 'egr', 'Eucgr.K03116' => 'egr', 'FAN02G3963' => 'fan', 'FAN05G0438' => 'fan', 'FAN09G2434' => 'fan', 'FAN12G3984' => 'fan', 'FAN14G0798' => 'fan', 'FAN17G0652' => 'fan', 'FAN19G1988' => 'fan', 'FAN22G0632' => 'fan', 'FAN23G0387' => 'fan', 'FAN26G1323' => 'fan', 'FAN28G0666' => 'fan', 'FvH4_1g26080' => 'fve', 'FvH4_3g36780' => 'fve', 'FvH4_4g15270' => 'fve', 'FvH4_6g13490' => 'fve', 'Glyma.01G098700' => 'gma', 'Glyma.03G065900' => 'gma', 'Glyma.03G073754' => 'gma', 'Glyma.03G073758' => 'gma', 'Glyma.03G083200' => 'gma', 'Glyma.03G225500' => 'gma', 'Glyma.05G037766' => 'gma', 'Glyma.07G133500' => 'gma', 'Glyma.10G139400' => 'gma', 'Glyma.10G248900' => 'gma', 'Glyma.11G137800' => 'gma', 'Glyma.12G061300' => 'gma', 'Glyma.13G337900' => 'gma', 'Glyma.15G036600' => 'gma', 'Glyma.18G182800' => 'gma', 'Glyma.19G222500' => 'gma', 'Glyma.20G144800' => 'gma', 'Gohir.A01G222000' => 'ghi', 'Gohir.A03G044000' => 'ghi', 'Gohir.A03G044100' => 'ghi', 'Gohir.A04G083100' => 'ghi', 'Gohir.A07G127200' => 'ghi', 'Gohir.A07G132400' => 'ghi', 'Gohir.A08G000700' => 'ghi', 'Gohir.A11G327300' => 'ghi', 'Gohir.D01G211500' => 'ghi', 'Gohir.D03G123400' => 'ghi', 'Gohir.D03G123500' => 'ghi', 'Gohir.D04G121800' => 'ghi', 'Gohir.D07G131500' => 'ghi', 'Gohir.D07G136600' => 'ghi', 'Gohir.D08G011600' => 'ghi', 'Gohir.D11G346200' => 'ghi', 'Gorai.001G142800' => 'gra', 'Gorai.001G148700' => 'gra', 'Gorai.002G257300' => 'gra', 'Gorai.003G130000' => 'gra', 'Gorai.003G130100' => 'gra', 'Gorai.004G005300' => 'gra', 'Gorai.007G376500' => 'gra', 'Gorai.012G104700' => 'gra', 'GSVIVG01017946001' => 'vvi', 'GSVIVG01024928001' => 'vvi', 'GSVIVG01028227001' => 'vvi', 'GSVIVG01034151001' => 'vvi', 'HanXRQChr05g0135031' => 'han', 'HanXRQChr05g0135041' => 'han', 'HanXRQChr05g0140021' => 'han', 'HanXRQChr06g0178981' => 'han', 'HanXRQChr07g0188251' => 'han', 'HanXRQChr08g0235311' => 'han', 'HanXRQChr09g0271011' => 'han', 'HanXRQChr10g0293321' => 'han', 'HanXRQChr13g0388171' => 'han', 'Haze_00916' => 'cav', 'Haze_05063' => 'cav', 'Haze_20814' => 'cav', 'Haze_24128' => 'cav', 'Hma1.2p1_0745F.1_g212010' => 'hma', 'Hma1.2p1_0757F.1_g213260' => 'hma', 'Hma1.2p1_0936F.1_g238840' => 'hma', 'Hma1.2p1_1735F.1_g299890' => 'hma', 'Hma1.2p1_1861F.1_g305685' => 'hma', 'HPP92_003397' => 'vpl', 'HPP92_012597' => 'vpl', 'HPP92_015520' => 'vpl', 'HPP92_015539' => 'vpl', 'HPP92_020373' => 'vpl', 'Hund04938' => 'sun', 'Hund10677' => 'sun', 'Hund11033' => 'sun', 'Hund12155' => 'sun', 'Lalb_Chr01g0022551' => 'lal', 'Lalb_Chr03g0042341' => 'lal', 'Lalb_Chr07g0192931' => 'lal', 'Lalb_Chr12g0209551' => 'lal', 'Lalb_Chr19g0125251' => 'lal', 'Lalb_Chr19g0137891' => 'lal', 'Lalb_Chr21g0304641' => 'lal', 'Lalb_Chr21g0309881' => 'lal', 'Lj1A5T12' => 'lonja', 'Lj1C148G10' => 'lonja', 'Lj2A93T83' => 'lonja', 'Lj3A738G68' => 'lonja', 'Lj3C966T1' => 'lonja', 'Lj3g0018958' => 'lja', 'Lj3g0021831' => 'lja', 'Lj3g0025443' => 'lja', 'Lj4g0026809' => 'lja', 'Lj5g0012558' => 'lja', 'Lj5g0021586' => 'lja', 'Lsat_1_v5_gn_5_156840' => 'lsa', 'Lsat_1_v5_gn_8_73460' => 'lsa', 'Lsat_1_v5_gn_8_73481' => 'lsa', 'Lsat_1_v5_gn_9_31601' => 'lsa', 'Lsat_1_v5_gn_9_77320' => 'lsa', 'Manes.01G171300' => 'mes', 'Manes.01G171400' => 'mes', 'Manes.01G236100' => 'mes', 'Manes.02G130500' => 'mes', 'Manes.02G130600' => 'mes', 'Manes.03G180200' => 'mes', 'Manes.05G007000' => 'mes', 'Manes.08G084400' => 'mes', 'Manes.09G092600' => 'mes', 'Manes.15G027900' => 'mes', 'MBI04_g40948_MAGBIO' => 'mbi', 'MBI14_g12123_MAGBIO' => 'mbi', 'MBI18_g28915_MAGBIO' => 'mbi', 'MCO09G053' => 'mco', 'MCO11G782' => 'mco', 'MCO15G215' => 'mco', 'MD03G1088500' => 'mdo', 'MD03G1088600' => 'mdo', 'MD04G1130800' => 'mdo', 'MD09G1291700' => 'mdo', 'MD11G1097500' => 'mdo', 'MD11G1097600' => 'mdo', 'MD12G1143900' => 'mdo', 'MD13G1191400' => 'mdo', 'MD16G1191500' => 'mdo', 'Medtr1g085570' => 'mtr', 'Medtr1g104610' => 'mtr', 'Medtr2g097520' => 'mtr', 'Medtr4g021800' => 'mtr', 'Medtr4g021825' => 'mtr', 'Medtr4g064270' => 'mtr', 'Medtr4g064380' => 'mtr', 'Medtr7g062150' => 'mtr', 'MELO3C003138.2' => 'cme', 'MELO3C005187.2' => 'cme', 'MELO3C009252.2' => 'cme', 'MELO3C014481.2' => 'cme', 'MELO3C020616.2' => 'cme', 'MELO3C020617.2' => 'cme', 'MELO3C020618.2' => 'cme', 'Migut.G00328' => 'egut', 'Migut.J00320' => 'egut', 'Migut.L01000' => 'egut', 'Migut.L01953' => 'egut', 'MSTRG.10253' => 'ama', 'MSTRG.19077' => 'ama', 'MSTRG.26780' => 'ama', 'MSTRG.4023' => 'ama', 'MSTRG.5655' => 'ama', 'MSTRG.9992' => 'ama', 'Nitab4.5_0000043g0310' => 'nta', 'Nitab4.5_0000463g0080' => 'nta', 'Nitab4.5_0000705g0170' => 'nta', 'Nitab4.5_0001326g0060' => 'nta', 'Nitab4.5_0001628g0030' => 'nta', 'Nitab4.5_0002103g0110' => 'nta', 'Nitab4.5_0002946g0030' => 'nta', 'Nitab4.5_0004639g0030' => 'nta', 'Nn2g11149' => 'nnu', 'Nn2g13389' => 'nnu', 'Nn4g25326' => 'nnu', 'Nn4g26290' => 'nnu', 'Nn5g29865' => 'nnu', 'Oeu004163.1' => 'oeu', 'Oeu006901.1' => 'oeu', 'Oeu010096.1' => 'oeu', 'Oeu024340.1' => 'oeu', 'Oeu048369.1' => 'oeu', 'Os01g0973000' => 'osa', 'Os03g0273800' => 'osa', 'Os03g0701200' => 'osa', 'Os03g0834050' => 'osa', 'Os07g0634400' => 'osa', 'Peaxi162Scf00092g01414' => 'pax', 'Peaxi162Scf00165g00818' => 'pax', 'Peaxi162Scf00309g00516' => 'pax', 'Peaxi162Scf00774g00218' => 'pax', 'PGR004G1824' => 'pgr', 'PGR004G2606' => 'pgr', 'PGR031G2716' => 'pgr', 'PGR102G2460' => 'pgr', 'PGR142G2599' => 'pgr', 'PGSC0003DMG400000843' => 'stu', 'PGSC0003DMG400008829' => 'stu', 'PGSC0003DMG400030418' => 'stu', 'PGSC0003DMG400031834' => 'stu', 'PGSC0003DMG401028300' => 'stu', 'PGSC0003DMG402028300' => 'stu', 'Phvul.001G219300' => 'pvu', 'Phvul.007G056000' => 'pvu', 'Phvul.007G208000' => 'pvu', 'Phvul.008G119500' => 'pvu', 'Phvul.010G011200' => 'pvu', 'Phvul.010G014800' => 'pvu', 'Phvul.011G062900' => 'pvu', 'Phvul.L007043' => 'pvu', 'Potri.001G242300' => 'ptr', 'Potri.002G185300' => 'ptr', 'Potri.006G086900' => 'ptr', 'Potri.008G151700' => 'ptr', 'Potri.009G033500' => 'ptr', 'Potri.010G089300' => 'ptr', 'Potri.014G110800' => 'ptr', 'Pp3c27_8130' => 'ppa', 'Pp3c6_27410' => 'ppa', 'PRCOL_00001659' => 'pco', 'PRCOL_00001927' => 'pco', 'PRCOL_00003649' => 'pco', 'Prupe.1G011600' => 'ppe', 'Prupe.3G000800' => 'ppe', 'Prupe.3G001100' => 'ppe', 'Prupe.6G072700' => 'ppe', 'Prupe.6G072800' => 'ppe', 'Prupe.6G257300' => 'ppe', 'Prupe.8G033000' => 'ppe', 'Psat0s2633g0080' => 'psa', 'Psat0s3396g0080' => 'psa', 'Psat0s3396g0200' => 'psa', 'Psat3g139080' => 'psa', 'Psat5g285080' => 'psa', 'Psat6g157760' => 'psa', 'Psat6g208440' => 'psa', 'Psat7g215320' => 'psa', 'Psat7g215400' => 'psa', 'Psat7g235600' => 'psa', 'Psat7g235760' => 'psa', 'PSO063G4603' => 'pso', 'PSO210G0182' => 'pso', 'PSO210G0196' => 'pso', 'PSO339G0394' => 'pso', 'PSO339G4127' => 'pso', 'PSO513G0064' => 'pso', 'PSO761G0079' => 'pso', 'QL01p031003' => 'qlo', 'QL01p031078' => 'qlo', 'QL06p003004' => 'qlo', 'QL07p048731' => 'qlo', 'QL09p037427' => 'qlo', 'RcHm_v2.0_Chr3g0466361' => 'rch', 'RcHm_v2.0_Chr3g0485571' => 'rch', 'RcHm_v2.0_Chr4g0416551' => 'rch', 'RcHm_v2.0_Chr5g0065831' => 'rch', 'Rhsim01G0230500' => 'rsi', 'Rhsim05G0194000' => 'rsi', 'Rhsim08G0250400' => 'rsi', 'Sabra02G0131000' => 'sbr', 'Sabra06G0066300' => 'sbr', 'Sabra08G0115500' => 'sbr', 'Sabra09G0023900' => 'sbr', 'Sabra10G0054000' => 'sbr', 'Sabra14G0081500' => 'sbr', 'Sabra16G0147100' => 'sbr', 'SalBow2G2957' => 'sbo', 'SalBow4G3320' => 'sbo', 'SalBow8G1894' => 'sbo', 'Sc07g0007950' => 'sci', 'Sc12g0001360' => 'sci', 'Sc13g0004330' => 'sci', 'Sc20g0005010' => 'sci', 'Sed0000361' => 'sed', 'Sed0001706' => 'sed', 'Sed0002422' => 'sed', 'Sed0004029' => 'sed', 'Sed0004602' => 'sed', 'Sed0004943' => 'sed', 'Sed0008646' => 'sed', 'Sed0023313' => 'sed', 'Sed0024843' => 'sed', 'SEGI_00081' => 'sgi', 'SEGI_00947' => 'sgi', 'SEGI_04046' => 'sgi', 'SEGI_06880' => 'sgi', 'SEGI_09736' => 'sgi', 'SEGI_12741' => 'sgi', 'SEGI_14530' => 'sgi', 'SEGI_20705' => 'sgi', 'SEGI_26088' => 'sgi', 'SEGI_28323' => 'sgi', 'SEGI_33343' => 'sgi', 'SGA_v2.0_scaffold126G33775' => 'sas', 'SGA_v2.0_scaffold2G01337' => 'sas', 'SGA_v2.0_scaffold38G15006' => 'sas', 'SGA_v2.0_scaffold39G15264' => 'sas', 'SGA_v2.0_scaffold453G51880' => 'sas', 'SHI12696' => 'shi', 'SMO367G1096' => 'smo', 'Solyc01g068630.3' => 'sly', 'Solyc05g011880.3' => 'sly', 'Solyc06g076300.3' => 'sly', 'Solyc09g010940.4' => 'sly', 'Solyc09g075890.3' => 'sly', 'Sopen01g030560' => 'spe', 'Sopen05g006630' => 'spe', 'Sopen06g032720' => 'spe', 'Sopen09g005660' => 'spe', 'Sopen09g030690' => 'spe', 'Sp4g14540' => 'spa', 'Sp4g20030' => 'spa', 'Sp5g01320' => 'spa', 'Sp6g21170' => 'spa', 'Sp6g21180' => 'spa', 'Sp6g21190' => 'spa', 'Sp6g40220' => 'spa', 'TAR362G0122' => 'tar', 'TAR362G1338' => 'tar', 'TAR369G0590' => 'tar', 'TAR371G0824' => 'tar', 'TAR622G1429' => 'tar', 'TAR623G0734' => 'tar', 'TAR625G0441' => 'tar', 'TAR629G0976' => 'tar', 'TAR633G1195' => 'tar', 'TAR636G2660' => 'tar', 'THA.LOC104799440' => 'tha', 'THA.LOC104800966' => 'tha', 'THA.LOC104806559' => 'tha', 'THA.LOC104810765' => 'tha', 'THA.LOC104816266' => 'tha', 'THA.LOC104817419' => 'tha', 'THA.LOC104827021' => 'tha', 'Thecc.01G327400' => 'tca', 'Thecc.04G229200' => 'tca', 'Thecc.05G037400' => 'tca', 'Thecc.09G318600' => 'tca', 'Thecc.09G318700' => 'tca', 'Thhalv10006238m.g' => 'esa', 'Thhalv10014321m.g' => 'esa', 'Thhalv10014335m.g' => 'esa', 'Thhalv10015826m.g' => 'esa', 'Thhalv10017107m.g' => 'esa', 'Thhalv10017180m.g' => 'esa', 'Thhalv10029339m.g' => 'esa', 'TPR.G1699' => 'tpr', 'TPR.G23609' => 'tpr', 'TPR.G3081' => 'tpr', 'TPR.G40397' => 'tpr', 'TPR.G5522' => 'tpr', 'TPR.G5618' => 'tpr', 'TPR.G5626' => 'tpr', 'TWI09G1632' => 'twi', 'TWI23G1230' => 'twi', 'TWI53G1064' => 'twi', 'TWI59G0751' => 'twi', 'TWI74G0947' => 'twi', 'TWI77G0337' => 'twi', 'TWI79G1254' => 'twi', 'unitig_0.g2341' => 'ugi', 'unitig_26.g10006' => 'ugi', 'unitig_26.g10008' => 'ugi', 'unitig_26.g9192' => 'ugi', 'vmacro14547' => 'vma', 'vmacro15333' => 'vma', 'vmacro18743' => 'vma', 'vmacro20166' => 'vma', 'VMungo0331G0523' => 'vmu', 'VMungo0331G1202' => 'vmu', 'VMungo0720G1228' => 'vmu', 'VMungo0720G1514' => 'vmu', 'VMungo1080G0169' => 'vmu', 'VMungo1127G1475' => 'vmu', 'VMungo1383G1208' => 'vmu', 'VMungo1383G1698' => 'vmu', 'Zm00001eb012270' => 'zma', 'Zm00001eb054100' => 'zma', 'Zm00001eb063350' => 'zma', 'Zm00001eb328560' => 'zma', 'Zm00001eb342820' => 'zma', 'Zm00001eb362210' => 'zma', 'Zm00001eb397730' => 'zma', 'Zm00001eb399750' => 'zma' ), 'gf_id' => 'HOM05D000959', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000959' ), 'data_identifier' => 'HOM05D000959', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000959', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '622', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p07100' => 'bna', 'A03p11720' => 'bna', 'A05p08300' => 'bna', 'A05p13380' => 'bna', 'A09p54130' => 'bna', 'A10p16690' => 'bna', 'A10p16700' => 'bna', 'A10p33390' => 'bna', 'Aa31LG10G16020' => 'aar', 'Aa31LG1G11810' => 'aar', 'Aa31LG1G11830' => 'aar', 'Aa31LG1G22510' => 'aar', 'Aa31LG5G4890' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5793' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2310' => 'aag', 'Actinidia08499' => 'ach', 'Actinidia11262' => 'ach', 'Actinidia23926' => 'ach', 'Actinidia34420' => 'ach', 'Actinidia36970' => 'ach', 'Ah.02g111220' => 'amhyb', 'Ah.15g097750' => 'amhyb', 'AL4G27500' => 'aly', 'AL6G11470' => 'aly', 'AL8G35950' => 'aly', 'AL8G35960' => 'aly', 'AL8G35970' => 'aly', 'Aqoxy1G00912' => 'aox', 'Aqoxy2G02253' => 'aox', 'Aqoxy2G02411' => 'aox', 'Aqoxy5G00485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BZ66YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K8ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM4FUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6BF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HFV7XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25JBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0YNNV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MAKK6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P70IT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP2Z6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V61LZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YWP64R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3S9AI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7PGHH' => 'arhy', 'AT2G32150' => 'ath', 'AT3G62040' => 'ath', 'AT5G02230' => 'ath', 'AT5G59480' => 'ath', 'AT5G59490' => 'ath', 'ATR0332G060' => 'atr', 'ATR0559G190' => 'atr', 'ATR0693G294' => 'atr', 'Atru.chr3.3975' => 'acertr', 'Atru.chr3.3976' => 'acertr', 'Atru.chr3.3977' => 'acertr', 'Atru.chr4.2498' => 'acertr', 'Atru.chr5.838' => 'acertr', 'Atru.chr8.1990' => 'acertr', 'Atru.chr8.1991' => 'acertr', 'Atru.chr8.1992' => 'acertr', 'AUR62001759' => 'cqu', 'AUR62009545' => 'cqu', 'AUR62010474' => 'cqu', 'AUR62025820' => 'cqu', 'AUR62030422' => 'cqu', 'AUR62033605' => 'cqu', 'AUR62038615' => 'cqu', 'AUR62041347' => 'cqu', 'BcaB01g04574' => 'bca', 'BcaB02g09263' => 'bca', 'BcaB02g10453' => 'bca', 'BcaB05g22513' => 'bca', 'BcaB08g36253' => 'bca', 'BcaB08g36254' => 'bca', 'BcaC01g06519' => 'bca', 'BcaC02g11889' => 'bca', 'BcaC03g14010' => 'bca', 'BcaC03g18439' => 'bca', 'BcaC04g19765' => 'bca', 'BcaC09g48432' => 'bca', 'BcaNung07302' => 'bca', 'BolC2t06040H' => 'bol', 'BolC2t07346H' => 'bol', 'BolC3t13817H' => 'bol', 'BolC4t22625H' => 'bol', 'BolC4t23297H' => 'bol', 'BolC8t51278H' => 'bol', 'BolC9t58050H' => 'bol', 'BolC9t58051H' => 'bol', 'BolC9t60163H' => 'bol', 'BraA02t04712Z' => 'bra', 'BraA02t05791Z' => 'bra', 'BraA03t10483Z' => 'bra', 'BraA05t19795Z' => 'bra', 'BraA05t20276Z' => 'bra', 'BraA09t40827Z' => 'bra', 'BraA10t43750Z' => 'bra', 'BraA10t43751Z' => 'bra', 'BraA10t45370Z' => 'bra', 'C02p00400' => 'bna', 'C02p12460' => 'bna', 'C03p13680' => 'bna', 'C04p10270' => 'bna', 'C04p17500' => 'bna', 'C08p37010' => 'bna', 'C09p51880' => 'bna', 'C09p51890' => 'bna', 'C09p74300' => 'bna', 'CAN.G179.26' => 'can', 'CAN.G3384.1' => 'can', 'CAN.G394.68' => 'can', 'CAN.G907.13' => 'can', 'CANSAT11G0012' => 'cansat', 'CANSAT25G1586' => 'cansat', 'CANSAT35G0735' => 'cansat', 'CANSAT54G0556' => 'cansat', 'CANSAT64G0356' => 'cansat', 'CANSAT78G2042' => 'cansat', 'CARHR125920' => 'chi', 'CARHR131910' => 'chi', 'CARHR172390' => 'chi', 'CARHR211140' => 'chi', 'CARHR285850' => 'chi', 'CARHR285860' => 'chi', 'Carub.0004s1347' => 'cru', 'Carub.0004s1960' => 'cru', 'Carub.0005s2880' => 'cru', 'Carub.0006s0107' => 'cru', 'Carub.0008s2015' => 'cru', 'Carub.0008s2016' => 'cru', 'Carub.0008s2017' => 'cru', 'Ca_01315_v3' => 'car', 'Ca_05063_v3' => 'car', 'Ca_10231_v3' => 'car', 'Ca_10913_v3' => 'car', 'Ca_19156_v3' => 'car', 'Ca_23644_v3' => 'car', 'Ca_26735_v3' => 'car', 'Cc01_g13130' => 'ccan', 'Cc02_g21690' => 'ccan', 'Cc03_g03600' => 'ccan', 'Cc06_g02510' => 'ccan', 'CDE02G1265' => 'cde', 'CDE05G0415' => 'cde', 'CDE08G1082' => 'cde', 'Cfa005780' => 'cfa', 'Cfa011522' => 'cfa', 'Cfa011523' => 'cfa', 'Cfa015627' => 'cfa', 'Cfa017359' => 'cfa', 'Ciclev10005687m.g' => 'ccl', 'Ciclev10012173m.g' => 'ccl', 'Ciclev10021621m.g' => 'ccl', 'Ciclev10028968m.g' => 'ccl', 'Ciclev10029907m.g' => 'ccl', 'CiPaw.01G164800' => 'cil', 'CiPaw.07G083700' => 'cil', 'CiPaw.07G127000' => 'cil', 'CiPaw.07G136900' => 'cil', 'CiPaw.08G081700' => 'cil', 'CiPaw.09G194600' => 'cil', 'CiPaw.10G146500' => 'cil', 'CiPaw.13G091500' => 'cil', 'CiPaw.13G091600' => 'cil', 'ClCG00G003390' => 'cla', 'ClCG01G007220' => 'cla', 'ClCG03G001370' => 'cla', 'ClCG04G008100' => 'cla', 'ClCG06G006110' => 'cla', 'ClCG06G006130' => 'cla', 'ClCG10G021210' => 'cla', 'COL.COLO4_07648' => 'col', 'COL.COLO4_07650' => 'col', 'COL.COLO4_07651' => 'col', 'COL.COLO4_14780' => 'col', 'COL.COLO4_18546' => 'col', 'COL.COLO4_18547' => 'col', 'COL.COLO4_23103' => 'col', 'COL.COLO4_30419' => 'col', 'COL.COLO4_34232' => 'col', 'Cpa.g.sc169.20' => 'cpa', 'Cpa.g.sc57.45' => 'cpa', 'Cpa.g.sc58.124' => 'cpa', 'Cpa.g.sc58.125' => 'cpa', 'Cpa.g.sc81.118' => 'cpa', 'Cpa.g.sc81.119' => 'cpa', 'Cre12.g524700' => 'cre', 'CsaV3_1G034430' => 'csa', 'CsaV3_1G034440' => 'csa', 'CsaV3_1G034450' => 'csa', 'CsaV3_3G034830' => 'csa', 'CsaV3_4G025090' => 'csa', 'CsaV3_5G018660' => 'csa', 'CsaV3_6G038160' => 'csa', 'CSS0003447' => 'camsi', 'CSS0017840' => 'camsi', 'CSS0019260' => 'camsi', 'CSS0040375' => 'camsi', 'CSS0042533' => 'camsi', 'DCAR_005960' => 'dca', 'DCAR_012104' => 'dca', 'DCAR_012105' => 'dca', 'DCAR_012293' => 'dca', 'DCAR_015632' => 'dca', 'DCAR_024602' => 'dca', 'DCAR_028752' => 'dca', 'Dinv06261' => 'din', 'Dinv13982' => 'din', 'Dinv17029' => 'din', 'Dinv18463' => 'din', 'Dinv33181' => 'din', 'Dinv35585' => 'din', 'Dinv37161' => 'din', 'Dinv42977' => 'din', 'Dinv43122' => 'din', 'Dinv44517' => 'din', 'Duzib093G0256' => 'dzi', 'Duzib106G1254' => 'dzi', 'Duzib128G1789' => 'dzi', 'Duzib133G0633' => 'dzi', 'Duzib138G0510' => 'dzi', 'Duzib150G1084' => 'dzi', 'Duzib168G0488' => 'dzi', 'Duzib168G1523' => 'dzi', 'Duzib170G0133' => 'dzi', 'ECA234G1433' => 'eca', 'ECA236G1432' => 'eca', 'ECA236G2256' => 'eca', 'ECA236G2365' => 'eca', 'ECA236G4830' => 'eca', 'ECA248G1505' => 'eca', 'EL10Ac3g06431' => 'bvu', 'EL10Ac5g12577' => 'bvu', 'EL10Ac6g13533' => 'bvu', 'EL10Ac7g16045' => 'bvu', 'Eucgr.A01281' => 'egr', 'Eucgr.B02326' => 'egr', 'Eucgr.H03532' => 'egr', 'Eucgr.K00553' => 'egr', 'Eucgr.K03116' => 'egr', 'FAN02G3963' => 'fan', 'FAN05G0438' => 'fan', 'FAN09G2434' => 'fan', 'FAN12G3984' => 'fan', 'FAN14G0798' => 'fan', 'FAN17G0652' => 'fan', 'FAN19G1988' => 'fan', 'FAN22G0632' => 'fan', 'FAN23G0387' => 'fan', 'FAN26G1323' => 'fan', 'FAN28G0666' => 'fan', 'FvH4_1g26080' => 'fve', 'FvH4_3g36780' => 'fve', 'FvH4_4g15270' => 'fve', 'FvH4_6g13490' => 'fve', 'Glyma.01G098700' => 'gma', 'Glyma.03G065900' => 'gma', 'Glyma.03G073754' => 'gma', 'Glyma.03G073758' => 'gma', 'Glyma.03G083200' => 'gma', 'Glyma.03G225500' => 'gma', 'Glyma.05G037766' => 'gma', 'Glyma.07G133500' => 'gma', 'Glyma.10G139400' => 'gma', 'Glyma.10G248900' => 'gma', 'Glyma.11G137800' => 'gma', 'Glyma.12G061300' => 'gma', 'Glyma.13G337900' => 'gma', 'Glyma.15G036600' => 'gma', 'Glyma.18G182800' => 'gma', 'Glyma.19G222500' => 'gma', 'Glyma.20G144800' => 'gma', 'Gohir.A01G222000' => 'ghi', 'Gohir.A03G044000' => 'ghi', 'Gohir.A03G044100' => 'ghi', 'Gohir.A04G083100' => 'ghi', 'Gohir.A07G127200' => 'ghi', 'Gohir.A07G132400' => 'ghi', 'Gohir.A08G000700' => 'ghi', 'Gohir.A11G327300' => 'ghi', 'Gohir.D01G211500' => 'ghi', 'Gohir.D03G123400' => 'ghi', 'Gohir.D03G123500' => 'ghi', 'Gohir.D04G121800' => 'ghi', 'Gohir.D07G131500' => 'ghi', 'Gohir.D07G136600' => 'ghi', 'Gohir.D08G011600' => 'ghi', 'Gohir.D11G346200' => 'ghi', 'Gorai.001G142800' => 'gra', 'Gorai.001G148700' => 'gra', 'Gorai.002G257300' => 'gra', 'Gorai.003G130000' => 'gra', 'Gorai.003G130100' => 'gra', 'Gorai.004G005300' => 'gra', 'Gorai.007G376500' => 'gra', 'Gorai.012G104700' => 'gra', 'GSVIVG01017946001' => 'vvi', 'GSVIVG01024928001' => 'vvi', 'GSVIVG01028227001' => 'vvi', 'GSVIVG01034151001' => 'vvi', 'HanXRQChr05g0135031' => 'han', 'HanXRQChr05g0135041' => 'han', 'HanXRQChr05g0140021' => 'han', 'HanXRQChr06g0178981' => 'han', 'HanXRQChr07g0188251' => 'han', 'HanXRQChr08g0235311' => 'han', 'HanXRQChr09g0271011' => 'han', 'HanXRQChr10g0293321' => 'han', 'HanXRQChr13g0388171' => 'han', 'Haze_00916' => 'cav', 'Haze_05063' => 'cav', 'Haze_20814' => 'cav', 'Haze_24128' => 'cav', 'Hma1.2p1_0745F.1_g212010' => 'hma', 'Hma1.2p1_0757F.1_g213260' => 'hma', 'Hma1.2p1_0936F.1_g238840' => 'hma', 'Hma1.2p1_1735F.1_g299890' => 'hma', 'Hma1.2p1_1861F.1_g305685' => 'hma', 'HPP92_003397' => 'vpl', 'HPP92_012597' => 'vpl', 'HPP92_015520' => 'vpl', 'HPP92_015539' => 'vpl', 'HPP92_020373' => 'vpl', 'Hund04938' => 'sun', 'Hund10677' => 'sun', 'Hund11033' => 'sun', 'Hund12155' => 'sun', 'Lalb_Chr01g0022551' => 'lal', 'Lalb_Chr03g0042341' => 'lal', 'Lalb_Chr07g0192931' => 'lal', 'Lalb_Chr12g0209551' => 'lal', 'Lalb_Chr19g0125251' => 'lal', 'Lalb_Chr19g0137891' => 'lal', 'Lalb_Chr21g0304641' => 'lal', 'Lalb_Chr21g0309881' => 'lal', 'Lj1A5T12' => 'lonja', 'Lj1C148G10' => 'lonja', 'Lj2A93T83' => 'lonja', 'Lj3A738G68' => 'lonja', 'Lj3C966T1' => 'lonja', 'Lj3g0018958' => 'lja', 'Lj3g0021831' => 'lja', 'Lj3g0025443' => 'lja', 'Lj4g0026809' => 'lja', 'Lj5g0012558' => 'lja', 'Lj5g0021586' => 'lja', 'Lsat_1_v5_gn_5_156840' => 'lsa', 'Lsat_1_v5_gn_8_73460' => 'lsa', 'Lsat_1_v5_gn_8_73481' => 'lsa', 'Lsat_1_v5_gn_9_31601' => 'lsa', 'Lsat_1_v5_gn_9_77320' => 'lsa', 'Manes.01G171300' => 'mes', 'Manes.01G171400' => 'mes', 'Manes.01G236100' => 'mes', 'Manes.02G130500' => 'mes', 'Manes.02G130600' => 'mes', 'Manes.03G180200' => 'mes', 'Manes.05G007000' => 'mes', 'Manes.08G084400' => 'mes', 'Manes.09G092600' => 'mes', 'Manes.15G027900' => 'mes', 'MBI04_g40948_MAGBIO' => 'mbi', 'MBI14_g12123_MAGBIO' => 'mbi', 'MBI18_g28915_MAGBIO' => 'mbi', 'MCO09G053' => 'mco', 'MCO11G782' => 'mco', 'MCO15G215' => 'mco', 'MD03G1088500' => 'mdo', 'MD03G1088600' => 'mdo', 'MD04G1130800' => 'mdo', 'MD09G1291700' => 'mdo', 'MD11G1097500' => 'mdo', 'MD11G1097600' => 'mdo', 'MD12G1143900' => 'mdo', 'MD13G1191400' => 'mdo', 'MD16G1191500' => 'mdo', 'Medtr1g085570' => 'mtr', 'Medtr1g104610' => 'mtr', 'Medtr2g097520' => 'mtr', 'Medtr4g021800' => 'mtr', 'Medtr4g021825' => 'mtr', 'Medtr4g064270' => 'mtr', 'Medtr4g064380' => 'mtr', 'Medtr7g062150' => 'mtr', 'MELO3C003138.2' => 'cme', 'MELO3C005187.2' => 'cme', 'MELO3C009252.2' => 'cme', 'MELO3C014481.2' => 'cme', 'MELO3C020616.2' => 'cme', 'MELO3C020617.2' => 'cme', 'MELO3C020618.2' => 'cme', 'Migut.G00328' => 'egut', 'Migut.J00320' => 'egut', 'Migut.L01000' => 'egut', 'Migut.L01953' => 'egut', 'MSTRG.10253' => 'ama', 'MSTRG.19077' => 'ama', 'MSTRG.26780' => 'ama', 'MSTRG.4023' => 'ama', 'MSTRG.5655' => 'ama', 'MSTRG.9992' => 'ama', 'Nitab4.5_0000043g0310' => 'nta', 'Nitab4.5_0000463g0080' => 'nta', 'Nitab4.5_0000705g0170' => 'nta', 'Nitab4.5_0001326g0060' => 'nta', 'Nitab4.5_0001628g0030' => 'nta', 'Nitab4.5_0002103g0110' => 'nta', 'Nitab4.5_0002946g0030' => 'nta', 'Nitab4.5_0004639g0030' => 'nta', 'Nn2g11149' => 'nnu', 'Nn2g13389' => 'nnu', 'Nn4g25326' => 'nnu', 'Nn4g26290' => 'nnu', 'Nn5g29865' => 'nnu', 'Oeu004163.1' => 'oeu', 'Oeu006901.1' => 'oeu', 'Oeu010096.1' => 'oeu', 'Oeu024340.1' => 'oeu', 'Oeu048369.1' => 'oeu', 'Os01g0973000' => 'osa', 'Os03g0273800' => 'osa', 'Os03g0701200' => 'osa', 'Os03g0834050' => 'osa', 'Os07g0634400' => 'osa', 'Peaxi162Scf00092g01414' => 'pax', 'Peaxi162Scf00165g00818' => 'pax', 'Peaxi162Scf00309g00516' => 'pax', 'Peaxi162Scf00774g00218' => 'pax', 'PGR004G1824' => 'pgr', 'PGR004G2606' => 'pgr', 'PGR031G2716' => 'pgr', 'PGR102G2460' => 'pgr', 'PGR142G2599' => 'pgr', 'PGSC0003DMG400000843' => 'stu', 'PGSC0003DMG400008829' => 'stu', 'PGSC0003DMG400030418' => 'stu', 'PGSC0003DMG400031834' => 'stu', 'PGSC0003DMG401028300' => 'stu', 'PGSC0003DMG402028300' => 'stu', 'Phvul.001G219300' => 'pvu', 'Phvul.007G056000' => 'pvu', 'Phvul.007G208000' => 'pvu', 'Phvul.008G119500' => 'pvu', 'Phvul.010G011200' => 'pvu', 'Phvul.010G014800' => 'pvu', 'Phvul.011G062900' => 'pvu', 'Phvul.L007043' => 'pvu', 'Potri.001G242300' => 'ptr', 'Potri.002G185300' => 'ptr', 'Potri.006G086900' => 'ptr', 'Potri.008G151700' => 'ptr', 'Potri.009G033500' => 'ptr', 'Potri.010G089300' => 'ptr', 'Potri.014G110800' => 'ptr', 'Pp3c27_8130' => 'ppa', 'Pp3c6_27410' => 'ppa', 'PRCOL_00001659' => 'pco', 'PRCOL_00001927' => 'pco', 'PRCOL_00003649' => 'pco', 'Prupe.1G011600' => 'ppe', 'Prupe.3G000800' => 'ppe', 'Prupe.3G001100' => 'ppe', 'Prupe.6G072700' => 'ppe', 'Prupe.6G072800' => 'ppe', 'Prupe.6G257300' => 'ppe', 'Prupe.8G033000' => 'ppe', 'Psat0s2633g0080' => 'psa', 'Psat0s3396g0080' => 'psa', 'Psat0s3396g0200' => 'psa', 'Psat3g139080' => 'psa', 'Psat5g285080' => 'psa', 'Psat6g157760' => 'psa', 'Psat6g208440' => 'psa', 'Psat7g215320' => 'psa', 'Psat7g215400' => 'psa', 'Psat7g235600' => 'psa', 'Psat7g235760' => 'psa', 'PSO063G4603' => 'pso', 'PSO210G0182' => 'pso', 'PSO210G0196' => 'pso', 'PSO339G0394' => 'pso', 'PSO339G4127' => 'pso', 'PSO513G0064' => 'pso', 'PSO761G0079' => 'pso', 'QL01p031003' => 'qlo', 'QL01p031078' => 'qlo', 'QL06p003004' => 'qlo', 'QL07p048731' => 'qlo', 'QL09p037427' => 'qlo', 'RcHm_v2.0_Chr3g0466361' => 'rch', 'RcHm_v2.0_Chr3g0485571' => 'rch', 'RcHm_v2.0_Chr4g0416551' => 'rch', 'RcHm_v2.0_Chr5g0065831' => 'rch', 'Rhsim01G0230500' => 'rsi', 'Rhsim05G0194000' => 'rsi', 'Rhsim08G0250400' => 'rsi', 'Sabra02G0131000' => 'sbr', 'Sabra06G0066300' => 'sbr', 'Sabra08G0115500' => 'sbr', 'Sabra09G0023900' => 'sbr', 'Sabra10G0054000' => 'sbr', 'Sabra14G0081500' => 'sbr', 'Sabra16G0147100' => 'sbr', 'SalBow2G2957' => 'sbo', 'SalBow4G3320' => 'sbo', 'SalBow8G1894' => 'sbo', 'Sc07g0007950' => 'sci', 'Sc12g0001360' => 'sci', 'Sc13g0004330' => 'sci', 'Sc20g0005010' => 'sci', 'Sed0000361' => 'sed', 'Sed0001706' => 'sed', 'Sed0002422' => 'sed', 'Sed0004029' => 'sed', 'Sed0004602' => 'sed', 'Sed0004943' => 'sed', 'Sed0008646' => 'sed', 'Sed0023313' => 'sed', 'Sed0024843' => 'sed', 'SEGI_00081' => 'sgi', 'SEGI_00947' => 'sgi', 'SEGI_04046' => 'sgi', 'SEGI_06880' => 'sgi', 'SEGI_09736' => 'sgi', 'SEGI_12741' => 'sgi', 'SEGI_14530' => 'sgi', 'SEGI_20705' => 'sgi', 'SEGI_26088' => 'sgi', 'SEGI_28323' => 'sgi', 'SEGI_33343' => 'sgi', 'SGA_v2.0_scaffold126G33775' => 'sas', 'SGA_v2.0_scaffold2G01337' => 'sas', 'SGA_v2.0_scaffold38G15006' => 'sas', 'SGA_v2.0_scaffold39G15264' => 'sas', 'SGA_v2.0_scaffold453G51880' => 'sas', 'SHI12696' => 'shi', 'SMO367G1096' => 'smo', 'Solyc01g068630.3' => 'sly', 'Solyc05g011880.3' => 'sly', 'Solyc06g076300.3' => 'sly', 'Solyc09g010940.4' => 'sly', 'Solyc09g075890.3' => 'sly', 'Sopen01g030560' => 'spe', 'Sopen05g006630' => 'spe', 'Sopen06g032720' => 'spe', 'Sopen09g005660' => 'spe', 'Sopen09g030690' => 'spe', 'Sp4g14540' => 'spa', 'Sp4g20030' => 'spa', 'Sp5g01320' => 'spa', 'Sp6g21170' => 'spa', 'Sp6g21180' => 'spa', 'Sp6g21190' => 'spa', 'Sp6g40220' => 'spa', 'TAR362G0122' => 'tar', 'TAR362G1338' => 'tar', 'TAR369G0590' => 'tar', 'TAR371G0824' => 'tar', 'TAR622G1429' => 'tar', 'TAR623G0734' => 'tar', 'TAR625G0441' => 'tar', 'TAR629G0976' => 'tar', 'TAR633G1195' => 'tar', 'TAR636G2660' => 'tar', 'THA.LOC104799440' => 'tha', 'THA.LOC104800966' => 'tha', 'THA.LOC104806559' => 'tha', 'THA.LOC104810765' => 'tha', 'THA.LOC104816266' => 'tha', 'THA.LOC104817419' => 'tha', 'THA.LOC104827021' => 'tha', 'Thecc.01G327400' => 'tca', 'Thecc.04G229200' => 'tca', 'Thecc.05G037400' => 'tca', 'Thecc.09G318600' => 'tca', 'Thecc.09G318700' => 'tca', 'Thhalv10006238m.g' => 'esa', 'Thhalv10014321m.g' => 'esa', 'Thhalv10014335m.g' => 'esa', 'Thhalv10015826m.g' => 'esa', 'Thhalv10017107m.g' => 'esa', 'Thhalv10017180m.g' => 'esa', 'Thhalv10029339m.g' => 'esa', 'TPR.G1699' => 'tpr', 'TPR.G23609' => 'tpr', 'TPR.G3081' => 'tpr', 'TPR.G40397' => 'tpr', 'TPR.G5522' => 'tpr', 'TPR.G5618' => 'tpr', 'TPR.G5626' => 'tpr', 'TWI09G1632' => 'twi', 'TWI23G1230' => 'twi', 'TWI53G1064' => 'twi', 'TWI59G0751' => 'twi', 'TWI74G0947' => 'twi', 'TWI77G0337' => 'twi', 'TWI79G1254' => 'twi', 'unitig_0.g2341' => 'ugi', 'unitig_26.g10006' => 'ugi', 'unitig_26.g10008' => 'ugi', 'unitig_26.g9192' => 'ugi', 'vmacro14547' => 'vma', 'vmacro15333' => 'vma', 'vmacro18743' => 'vma', 'vmacro20166' => 'vma', 'VMungo0331G0523' => 'vmu', 'VMungo0331G1202' => 'vmu', 'VMungo0720G1228' => 'vmu', 'VMungo0720G1514' => 'vmu', 'VMungo1080G0169' => 'vmu', 'VMungo1127G1475' => 'vmu', 'VMungo1383G1208' => 'vmu', 'VMungo1383G1698' => 'vmu', 'Zm00001eb012270' => 'zma', 'Zm00001eb054100' => 'zma', 'Zm00001eb063350' => 'zma', 'Zm00001eb328560' => 'zma', 'Zm00001eb342820' => 'zma', 'Zm00001eb362210' => 'zma', 'Zm00001eb397730' => 'zma', 'Zm00001eb399750' => 'zma' ) $gf_id = 'HOM05D000959' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000959' ) $data_identifier = 'HOM05D000959' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 5, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 5, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 10, 'mbi' => (int) 3, 'mco' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 2, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 3, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 11, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399750' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000959', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '622', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p07100' => 'bna', 'A03p11720' => 'bna', 'A05p08300' => 'bna', 'A05p13380' => 'bna', 'A09p54130' => 'bna', 'A10p16690' => 'bna', 'A10p16700' => 'bna', 'A10p33390' => 'bna', 'Aa31LG10G16020' => 'aar', 'Aa31LG1G11810' => 'aar', 'Aa31LG1G11830' => 'aar', 'Aa31LG1G22510' => 'aar', 'Aa31LG5G4890' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5793' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2310' => 'aag', 'Actinidia08499' => 'ach', 'Actinidia11262' => 'ach', 'Actinidia23926' => 'ach', 'Actinidia34420' => 'ach', 'Actinidia36970' => 'ach', 'Ah.02g111220' => 'amhyb', 'Ah.15g097750' => 'amhyb', 'AL4G27500' => 'aly', 'AL6G11470' => 'aly', 'AL8G35950' => 'aly', 'AL8G35960' => 'aly', 'AL8G35970' => 'aly', 'Aqoxy1G00912' => 'aox', 'Aqoxy2G02253' => 'aox', 'Aqoxy2G02411' => 'aox', 'Aqoxy5G00485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BZ66YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K8ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM4FUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6BF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HFV7XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25JBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0YNNV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MAKK6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P70IT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP2Z6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V61LZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YWP64R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3S9AI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7PGHH' => 'arhy', 'AT2G32150' => 'ath', 'AT3G62040' => 'ath', 'AT5G02230' => 'ath', 'AT5G59480' => 'ath', 'AT5G59490' => 'ath', 'ATR0332G060' => 'atr', 'ATR0559G190' => 'atr', 'ATR0693G294' => 'atr', 'Atru.chr3.3975' => 'acertr', 'Atru.chr3.3976' => 'acertr', 'Atru.chr3.3977' => 'acertr', 'Atru.chr4.2498' => 'acertr', 'Atru.chr5.838' => 'acertr', 'Atru.chr8.1990' => 'acertr', 'Atru.chr8.1991' => 'acertr', 'Atru.chr8.1992' => 'acertr', 'AUR62001759' => 'cqu', 'AUR62009545' => 'cqu', 'AUR62010474' => 'cqu', 'AUR62025820' => 'cqu', 'AUR62030422' => 'cqu', 'AUR62033605' => 'cqu', 'AUR62038615' => 'cqu', 'AUR62041347' => 'cqu', 'BcaB01g04574' => 'bca', 'BcaB02g09263' => 'bca', 'BcaB02g10453' => 'bca', 'BcaB05g22513' => 'bca', 'BcaB08g36253' => 'bca', 'BcaB08g36254' => 'bca', 'BcaC01g06519' => 'bca', 'BcaC02g11889' => 'bca', 'BcaC03g14010' => 'bca', 'BcaC03g18439' => 'bca', 'BcaC04g19765' => 'bca', 'BcaC09g48432' => 'bca', 'BcaNung07302' => 'bca', 'BolC2t06040H' => 'bol', 'BolC2t07346H' => 'bol', 'BolC3t13817H' => 'bol', 'BolC4t22625H' => 'bol', 'BolC4t23297H' => 'bol', 'BolC8t51278H' => 'bol', 'BolC9t58050H' => 'bol', 'BolC9t58051H' => 'bol', 'BolC9t60163H' => 'bol', 'BraA02t04712Z' => 'bra', 'BraA02t05791Z' => 'bra', 'BraA03t10483Z' => 'bra', 'BraA05t19795Z' => 'bra', 'BraA05t20276Z' => 'bra', 'BraA09t40827Z' => 'bra', 'BraA10t43750Z' => 'bra', 'BraA10t43751Z' => 'bra', 'BraA10t45370Z' => 'bra', 'C02p00400' => 'bna', 'C02p12460' => 'bna', 'C03p13680' => 'bna', 'C04p10270' => 'bna', 'C04p17500' => 'bna', 'C08p37010' => 'bna', 'C09p51880' => 'bna', 'C09p51890' => 'bna', 'C09p74300' => 'bna', 'CAN.G179.26' => 'can', 'CAN.G3384.1' => 'can', 'CAN.G394.68' => 'can', 'CAN.G907.13' => 'can', 'CANSAT11G0012' => 'cansat', 'CANSAT25G1586' => 'cansat', 'CANSAT35G0735' => 'cansat', 'CANSAT54G0556' => 'cansat', 'CANSAT64G0356' => 'cansat', 'CANSAT78G2042' => 'cansat', 'CARHR125920' => 'chi', 'CARHR131910' => 'chi', 'CARHR172390' => 'chi', 'CARHR211140' => 'chi', 'CARHR285850' => 'chi', 'CARHR285860' => 'chi', 'Carub.0004s1347' => 'cru', 'Carub.0004s1960' => 'cru', 'Carub.0005s2880' => 'cru', 'Carub.0006s0107' => 'cru', 'Carub.0008s2015' => 'cru', 'Carub.0008s2016' => 'cru', 'Carub.0008s2017' => 'cru', 'Ca_01315_v3' => 'car', 'Ca_05063_v3' => 'car', 'Ca_10231_v3' => 'car', 'Ca_10913_v3' => 'car', 'Ca_19156_v3' => 'car', 'Ca_23644_v3' => 'car', 'Ca_26735_v3' => 'car', 'Cc01_g13130' => 'ccan', 'Cc02_g21690' => 'ccan', 'Cc03_g03600' => 'ccan', 'Cc06_g02510' => 'ccan', 'CDE02G1265' => 'cde', 'CDE05G0415' => 'cde', 'CDE08G1082' => 'cde', 'Cfa005780' => 'cfa', 'Cfa011522' => 'cfa', 'Cfa011523' => 'cfa', 'Cfa015627' => 'cfa', 'Cfa017359' => 'cfa', 'Ciclev10005687m.g' => 'ccl', 'Ciclev10012173m.g' => 'ccl', 'Ciclev10021621m.g' => 'ccl', 'Ciclev10028968m.g' => 'ccl', 'Ciclev10029907m.g' => 'ccl', 'CiPaw.01G164800' => 'cil', 'CiPaw.07G083700' => 'cil', 'CiPaw.07G127000' => 'cil', 'CiPaw.07G136900' => 'cil', 'CiPaw.08G081700' => 'cil', 'CiPaw.09G194600' => 'cil', 'CiPaw.10G146500' => 'cil', 'CiPaw.13G091500' => 'cil', 'CiPaw.13G091600' => 'cil', 'ClCG00G003390' => 'cla', 'ClCG01G007220' => 'cla', 'ClCG03G001370' => 'cla', 'ClCG04G008100' => 'cla', 'ClCG06G006110' => 'cla', 'ClCG06G006130' => 'cla', 'ClCG10G021210' => 'cla', 'COL.COLO4_07648' => 'col', 'COL.COLO4_07650' => 'col', 'COL.COLO4_07651' => 'col', 'COL.COLO4_14780' => 'col', 'COL.COLO4_18546' => 'col', 'COL.COLO4_18547' => 'col', 'COL.COLO4_23103' => 'col', 'COL.COLO4_30419' => 'col', 'COL.COLO4_34232' => 'col', 'Cpa.g.sc169.20' => 'cpa', 'Cpa.g.sc57.45' => 'cpa', 'Cpa.g.sc58.124' => 'cpa', 'Cpa.g.sc58.125' => 'cpa', 'Cpa.g.sc81.118' => 'cpa', 'Cpa.g.sc81.119' => 'cpa', 'Cre12.g524700' => 'cre', 'CsaV3_1G034430' => 'csa', 'CsaV3_1G034440' => 'csa', 'CsaV3_1G034450' => 'csa', 'CsaV3_3G034830' => 'csa', 'CsaV3_4G025090' => 'csa', 'CsaV3_5G018660' => 'csa', 'CsaV3_6G038160' => 'csa', 'CSS0003447' => 'camsi', 'CSS0017840' => 'camsi', 'CSS0019260' => 'camsi', 'CSS0040375' => 'camsi', 'CSS0042533' => 'camsi', 'DCAR_005960' => 'dca', 'DCAR_012104' => 'dca', 'DCAR_012105' => 'dca', 'DCAR_012293' => 'dca', 'DCAR_015632' => 'dca', 'DCAR_024602' => 'dca', 'DCAR_028752' => 'dca', 'Dinv06261' => 'din', 'Dinv13982' => 'din', 'Dinv17029' => 'din', 'Dinv18463' => 'din', 'Dinv33181' => 'din', 'Dinv35585' => 'din', 'Dinv37161' => 'din', 'Dinv42977' => 'din', 'Dinv43122' => 'din', 'Dinv44517' => 'din', 'Duzib093G0256' => 'dzi', 'Duzib106G1254' => 'dzi', 'Duzib128G1789' => 'dzi', 'Duzib133G0633' => 'dzi', 'Duzib138G0510' => 'dzi', 'Duzib150G1084' => 'dzi', 'Duzib168G0488' => 'dzi', 'Duzib168G1523' => 'dzi', 'Duzib170G0133' => 'dzi', 'ECA234G1433' => 'eca', 'ECA236G1432' => 'eca', 'ECA236G2256' => 'eca', 'ECA236G2365' => 'eca', 'ECA236G4830' => 'eca', 'ECA248G1505' => 'eca', 'EL10Ac3g06431' => 'bvu', 'EL10Ac5g12577' => 'bvu', 'EL10Ac6g13533' => 'bvu', 'EL10Ac7g16045' => 'bvu', 'Eucgr.A01281' => 'egr', 'Eucgr.B02326' => 'egr', 'Eucgr.H03532' => 'egr', 'Eucgr.K00553' => 'egr', 'Eucgr.K03116' => 'egr', 'FAN02G3963' => 'fan', 'FAN05G0438' => 'fan', 'FAN09G2434' => 'fan', 'FAN12G3984' => 'fan', 'FAN14G0798' => 'fan', 'FAN17G0652' => 'fan', 'FAN19G1988' => 'fan', 'FAN22G0632' => 'fan', 'FAN23G0387' => 'fan', 'FAN26G1323' => 'fan', 'FAN28G0666' => 'fan', 'FvH4_1g26080' => 'fve', 'FvH4_3g36780' => 'fve', 'FvH4_4g15270' => 'fve', 'FvH4_6g13490' => 'fve', 'Glyma.01G098700' => 'gma', 'Glyma.03G065900' => 'gma', 'Glyma.03G073754' => 'gma', 'Glyma.03G073758' => 'gma', 'Glyma.03G083200' => 'gma', 'Glyma.03G225500' => 'gma', 'Glyma.05G037766' => 'gma', 'Glyma.07G133500' => 'gma', 'Glyma.10G139400' => 'gma', 'Glyma.10G248900' => 'gma', 'Glyma.11G137800' => 'gma', 'Glyma.12G061300' => 'gma', 'Glyma.13G337900' => 'gma', 'Glyma.15G036600' => 'gma', 'Glyma.18G182800' => 'gma', 'Glyma.19G222500' => 'gma', 'Glyma.20G144800' => 'gma', 'Gohir.A01G222000' => 'ghi', 'Gohir.A03G044000' => 'ghi', 'Gohir.A03G044100' => 'ghi', 'Gohir.A04G083100' => 'ghi', 'Gohir.A07G127200' => 'ghi', 'Gohir.A07G132400' => 'ghi', 'Gohir.A08G000700' => 'ghi', 'Gohir.A11G327300' => 'ghi', 'Gohir.D01G211500' => 'ghi', 'Gohir.D03G123400' => 'ghi', 'Gohir.D03G123500' => 'ghi', 'Gohir.D04G121800' => 'ghi', 'Gohir.D07G131500' => 'ghi', 'Gohir.D07G136600' => 'ghi', 'Gohir.D08G011600' => 'ghi', 'Gohir.D11G346200' => 'ghi', 'Gorai.001G142800' => 'gra', 'Gorai.001G148700' => 'gra', 'Gorai.002G257300' => 'gra', 'Gorai.003G130000' => 'gra', 'Gorai.003G130100' => 'gra', 'Gorai.004G005300' => 'gra', 'Gorai.007G376500' => 'gra', 'Gorai.012G104700' => 'gra', 'GSVIVG01017946001' => 'vvi', 'GSVIVG01024928001' => 'vvi', 'GSVIVG01028227001' => 'vvi', 'GSVIVG01034151001' => 'vvi', 'HanXRQChr05g0135031' => 'han', 'HanXRQChr05g0135041' => 'han', 'HanXRQChr05g0140021' => 'han', 'HanXRQChr06g0178981' => 'han', 'HanXRQChr07g0188251' => 'han', 'HanXRQChr08g0235311' => 'han', 'HanXRQChr09g0271011' => 'han', 'HanXRQChr10g0293321' => 'han', 'HanXRQChr13g0388171' => 'han', 'Haze_00916' => 'cav', 'Haze_05063' => 'cav', 'Haze_20814' => 'cav', 'Haze_24128' => 'cav', 'Hma1.2p1_0745F.1_g212010' => 'hma', 'Hma1.2p1_0757F.1_g213260' => 'hma', 'Hma1.2p1_0936F.1_g238840' => 'hma', 'Hma1.2p1_1735F.1_g299890' => 'hma', 'Hma1.2p1_1861F.1_g305685' => 'hma', 'HPP92_003397' => 'vpl', 'HPP92_012597' => 'vpl', 'HPP92_015520' => 'vpl', 'HPP92_015539' => 'vpl', 'HPP92_020373' => 'vpl', 'Hund04938' => 'sun', 'Hund10677' => 'sun', 'Hund11033' => 'sun', 'Hund12155' => 'sun', 'Lalb_Chr01g0022551' => 'lal', 'Lalb_Chr03g0042341' => 'lal', 'Lalb_Chr07g0192931' => 'lal', 'Lalb_Chr12g0209551' => 'lal', 'Lalb_Chr19g0125251' => 'lal', 'Lalb_Chr19g0137891' => 'lal', 'Lalb_Chr21g0304641' => 'lal', 'Lalb_Chr21g0309881' => 'lal', 'Lj1A5T12' => 'lonja', 'Lj1C148G10' => 'lonja', 'Lj2A93T83' => 'lonja', 'Lj3A738G68' => 'lonja', 'Lj3C966T1' => 'lonja', 'Lj3g0018958' => 'lja', 'Lj3g0021831' => 'lja', 'Lj3g0025443' => 'lja', 'Lj4g0026809' => 'lja', 'Lj5g0012558' => 'lja', 'Lj5g0021586' => 'lja', 'Lsat_1_v5_gn_5_156840' => 'lsa', 'Lsat_1_v5_gn_8_73460' => 'lsa', 'Lsat_1_v5_gn_8_73481' => 'lsa', 'Lsat_1_v5_gn_9_31601' => 'lsa', 'Lsat_1_v5_gn_9_77320' => 'lsa', 'Manes.01G171300' => 'mes', 'Manes.01G171400' => 'mes', 'Manes.01G236100' => 'mes', 'Manes.02G130500' => 'mes', 'Manes.02G130600' => 'mes', 'Manes.03G180200' => 'mes', 'Manes.05G007000' => 'mes', 'Manes.08G084400' => 'mes', 'Manes.09G092600' => 'mes', 'Manes.15G027900' => 'mes', 'MBI04_g40948_MAGBIO' => 'mbi', 'MBI14_g12123_MAGBIO' => 'mbi', 'MBI18_g28915_MAGBIO' => 'mbi', 'MCO09G053' => 'mco', 'MCO11G782' => 'mco', 'MCO15G215' => 'mco', 'MD03G1088500' => 'mdo', 'MD03G1088600' => 'mdo', 'MD04G1130800' => 'mdo', 'MD09G1291700' => 'mdo', 'MD11G1097500' => 'mdo', 'MD11G1097600' => 'mdo', 'MD12G1143900' => 'mdo', 'MD13G1191400' => 'mdo', 'MD16G1191500' => 'mdo', 'Medtr1g085570' => 'mtr', 'Medtr1g104610' => 'mtr', 'Medtr2g097520' => 'mtr', 'Medtr4g021800' => 'mtr', 'Medtr4g021825' => 'mtr', 'Medtr4g064270' => 'mtr', 'Medtr4g064380' => 'mtr', 'Medtr7g062150' => 'mtr', 'MELO3C003138.2' => 'cme', 'MELO3C005187.2' => 'cme', 'MELO3C009252.2' => 'cme', 'MELO3C014481.2' => 'cme', 'MELO3C020616.2' => 'cme', 'MELO3C020617.2' => 'cme', 'MELO3C020618.2' => 'cme', 'Migut.G00328' => 'egut', 'Migut.J00320' => 'egut', 'Migut.L01000' => 'egut', 'Migut.L01953' => 'egut', 'MSTRG.10253' => 'ama', 'MSTRG.19077' => 'ama', 'MSTRG.26780' => 'ama', 'MSTRG.4023' => 'ama', 'MSTRG.5655' => 'ama', 'MSTRG.9992' => 'ama', 'Nitab4.5_0000043g0310' => 'nta', 'Nitab4.5_0000463g0080' => 'nta', 'Nitab4.5_0000705g0170' => 'nta', 'Nitab4.5_0001326g0060' => 'nta', 'Nitab4.5_0001628g0030' => 'nta', 'Nitab4.5_0002103g0110' => 'nta', 'Nitab4.5_0002946g0030' => 'nta', 'Nitab4.5_0004639g0030' => 'nta', 'Nn2g11149' => 'nnu', 'Nn2g13389' => 'nnu', 'Nn4g25326' => 'nnu', 'Nn4g26290' => 'nnu', 'Nn5g29865' => 'nnu', 'Oeu004163.1' => 'oeu', 'Oeu006901.1' => 'oeu', 'Oeu010096.1' => 'oeu', 'Oeu024340.1' => 'oeu', 'Oeu048369.1' => 'oeu', 'Os01g0973000' => 'osa', 'Os03g0273800' => 'osa', 'Os03g0701200' => 'osa', 'Os03g0834050' => 'osa', 'Os07g0634400' => 'osa', 'Peaxi162Scf00092g01414' => 'pax', 'Peaxi162Scf00165g00818' => 'pax', 'Peaxi162Scf00309g00516' => 'pax', 'Peaxi162Scf00774g00218' => 'pax', 'PGR004G1824' => 'pgr', 'PGR004G2606' => 'pgr', 'PGR031G2716' => 'pgr', 'PGR102G2460' => 'pgr', 'PGR142G2599' => 'pgr', 'PGSC0003DMG400000843' => 'stu', 'PGSC0003DMG400008829' => 'stu', 'PGSC0003DMG400030418' => 'stu', 'PGSC0003DMG400031834' => 'stu', 'PGSC0003DMG401028300' => 'stu', 'PGSC0003DMG402028300' => 'stu', 'Phvul.001G219300' => 'pvu', 'Phvul.007G056000' => 'pvu', 'Phvul.007G208000' => 'pvu', 'Phvul.008G119500' => 'pvu', 'Phvul.010G011200' => 'pvu', 'Phvul.010G014800' => 'pvu', 'Phvul.011G062900' => 'pvu', 'Phvul.L007043' => 'pvu', 'Potri.001G242300' => 'ptr', 'Potri.002G185300' => 'ptr', 'Potri.006G086900' => 'ptr', 'Potri.008G151700' => 'ptr', 'Potri.009G033500' => 'ptr', 'Potri.010G089300' => 'ptr', 'Potri.014G110800' => 'ptr', 'Pp3c27_8130' => 'ppa', 'Pp3c6_27410' => 'ppa', 'PRCOL_00001659' => 'pco', 'PRCOL_00001927' => 'pco', 'PRCOL_00003649' => 'pco', 'Prupe.1G011600' => 'ppe', 'Prupe.3G000800' => 'ppe', 'Prupe.3G001100' => 'ppe', 'Prupe.6G072700' => 'ppe', 'Prupe.6G072800' => 'ppe', 'Prupe.6G257300' => 'ppe', 'Prupe.8G033000' => 'ppe', 'Psat0s2633g0080' => 'psa', 'Psat0s3396g0080' => 'psa', 'Psat0s3396g0200' => 'psa', 'Psat3g139080' => 'psa', 'Psat5g285080' => 'psa', 'Psat6g157760' => 'psa', 'Psat6g208440' => 'psa', 'Psat7g215320' => 'psa', 'Psat7g215400' => 'psa', 'Psat7g235600' => 'psa', 'Psat7g235760' => 'psa', 'PSO063G4603' => 'pso', 'PSO210G0182' => 'pso', 'PSO210G0196' => 'pso', 'PSO339G0394' => 'pso', 'PSO339G4127' => 'pso', 'PSO513G0064' => 'pso', 'PSO761G0079' => 'pso', 'QL01p031003' => 'qlo', 'QL01p031078' => 'qlo', 'QL06p003004' => 'qlo', 'QL07p048731' => 'qlo', 'QL09p037427' => 'qlo', 'RcHm_v2.0_Chr3g0466361' => 'rch', 'RcHm_v2.0_Chr3g0485571' => 'rch', 'RcHm_v2.0_Chr4g0416551' => 'rch', 'RcHm_v2.0_Chr5g0065831' => 'rch', 'Rhsim01G0230500' => 'rsi', 'Rhsim05G0194000' => 'rsi', 'Rhsim08G0250400' => 'rsi', 'Sabra02G0131000' => 'sbr', 'Sabra06G0066300' => 'sbr', 'Sabra08G0115500' => 'sbr', 'Sabra09G0023900' => 'sbr', 'Sabra10G0054000' => 'sbr', 'Sabra14G0081500' => 'sbr', 'Sabra16G0147100' => 'sbr', 'SalBow2G2957' => 'sbo', 'SalBow4G3320' => 'sbo', 'SalBow8G1894' => 'sbo', 'Sc07g0007950' => 'sci', 'Sc12g0001360' => 'sci', 'Sc13g0004330' => 'sci', 'Sc20g0005010' => 'sci', 'Sed0000361' => 'sed', 'Sed0001706' => 'sed', 'Sed0002422' => 'sed', 'Sed0004029' => 'sed', 'Sed0004602' => 'sed', 'Sed0004943' => 'sed', 'Sed0008646' => 'sed', 'Sed0023313' => 'sed', 'Sed0024843' => 'sed', 'SEGI_00081' => 'sgi', 'SEGI_00947' => 'sgi', 'SEGI_04046' => 'sgi', 'SEGI_06880' => 'sgi', 'SEGI_09736' => 'sgi', 'SEGI_12741' => 'sgi', 'SEGI_14530' => 'sgi', 'SEGI_20705' => 'sgi', 'SEGI_26088' => 'sgi', 'SEGI_28323' => 'sgi', 'SEGI_33343' => 'sgi', 'SGA_v2.0_scaffold126G33775' => 'sas', 'SGA_v2.0_scaffold2G01337' => 'sas', 'SGA_v2.0_scaffold38G15006' => 'sas', 'SGA_v2.0_scaffold39G15264' => 'sas', 'SGA_v2.0_scaffold453G51880' => 'sas', 'SHI12696' => 'shi', 'SMO367G1096' => 'smo', 'Solyc01g068630.3' => 'sly', 'Solyc05g011880.3' => 'sly', 'Solyc06g076300.3' => 'sly', 'Solyc09g010940.4' => 'sly', 'Solyc09g075890.3' => 'sly', 'Sopen01g030560' => 'spe', 'Sopen05g006630' => 'spe', 'Sopen06g032720' => 'spe', 'Sopen09g005660' => 'spe', 'Sopen09g030690' => 'spe', 'Sp4g14540' => 'spa', 'Sp4g20030' => 'spa', 'Sp5g01320' => 'spa', 'Sp6g21170' => 'spa', 'Sp6g21180' => 'spa', 'Sp6g21190' => 'spa', 'Sp6g40220' => 'spa', 'TAR362G0122' => 'tar', 'TAR362G1338' => 'tar', 'TAR369G0590' => 'tar', 'TAR371G0824' => 'tar', 'TAR622G1429' => 'tar', 'TAR623G0734' => 'tar', 'TAR625G0441' => 'tar', 'TAR629G0976' => 'tar', 'TAR633G1195' => 'tar', 'TAR636G2660' => 'tar', 'THA.LOC104799440' => 'tha', 'THA.LOC104800966' => 'tha', 'THA.LOC104806559' => 'tha', 'THA.LOC104810765' => 'tha', 'THA.LOC104816266' => 'tha', 'THA.LOC104817419' => 'tha', 'THA.LOC104827021' => 'tha', 'Thecc.01G327400' => 'tca', 'Thecc.04G229200' => 'tca', 'Thecc.05G037400' => 'tca', 'Thecc.09G318600' => 'tca', 'Thecc.09G318700' => 'tca', 'Thhalv10006238m.g' => 'esa', 'Thhalv10014321m.g' => 'esa', 'Thhalv10014335m.g' => 'esa', 'Thhalv10015826m.g' => 'esa', 'Thhalv10017107m.g' => 'esa', 'Thhalv10017180m.g' => 'esa', 'Thhalv10029339m.g' => 'esa', 'TPR.G1699' => 'tpr', 'TPR.G23609' => 'tpr', 'TPR.G3081' => 'tpr', 'TPR.G40397' => 'tpr', 'TPR.G5522' => 'tpr', 'TPR.G5618' => 'tpr', 'TPR.G5626' => 'tpr', 'TWI09G1632' => 'twi', 'TWI23G1230' => 'twi', 'TWI53G1064' => 'twi', 'TWI59G0751' => 'twi', 'TWI74G0947' => 'twi', 'TWI77G0337' => 'twi', 'TWI79G1254' => 'twi', 'unitig_0.g2341' => 'ugi', 'unitig_26.g10006' => 'ugi', 'unitig_26.g10008' => 'ugi', 'unitig_26.g9192' => 'ugi', 'vmacro14547' => 'vma', 'vmacro15333' => 'vma', 'vmacro18743' => 'vma', 'vmacro20166' => 'vma', 'VMungo0331G0523' => 'vmu', 'VMungo0331G1202' => 'vmu', 'VMungo0720G1228' => 'vmu', 'VMungo0720G1514' => 'vmu', 'VMungo1080G0169' => 'vmu', 'VMungo1127G1475' => 'vmu', 'VMungo1383G1208' => 'vmu', 'VMungo1383G1698' => 'vmu', 'Zm00001eb012270' => 'zma', 'Zm00001eb054100' => 'zma', 'Zm00001eb063350' => 'zma', 'Zm00001eb328560' => 'zma', 'Zm00001eb342820' => 'zma', 'Zm00001eb362210' => 'zma', 'Zm00001eb397730' => 'zma', 'Zm00001eb399750' => 'zma' ), 'gf_id' => 'HOM05D000959', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000959' ), 'data_identifier' => 'HOM05D000959', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000959', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '622', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p07100' => 'bna', 'A03p11720' => 'bna', 'A05p08300' => 'bna', 'A05p13380' => 'bna', 'A09p54130' => 'bna', 'A10p16690' => 'bna', 'A10p16700' => 'bna', 'A10p33390' => 'bna', 'Aa31LG10G16020' => 'aar', 'Aa31LG1G11810' => 'aar', 'Aa31LG1G11830' => 'aar', 'Aa31LG1G22510' => 'aar', 'Aa31LG5G4890' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5793' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2310' => 'aag', 'Actinidia08499' => 'ach', 'Actinidia11262' => 'ach', 'Actinidia23926' => 'ach', 'Actinidia34420' => 'ach', 'Actinidia36970' => 'ach', 'Ah.02g111220' => 'amhyb', 'Ah.15g097750' => 'amhyb', 'AL4G27500' => 'aly', 'AL6G11470' => 'aly', 'AL8G35950' => 'aly', 'AL8G35960' => 'aly', 'AL8G35970' => 'aly', 'Aqoxy1G00912' => 'aox', 'Aqoxy2G02253' => 'aox', 'Aqoxy2G02411' => 'aox', 'Aqoxy5G00485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BZ66YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K8ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM4FUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6BF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HFV7XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25JBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0YNNV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MAKK6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P70IT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP2Z6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V61LZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YWP64R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3S9AI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7PGHH' => 'arhy', 'AT2G32150' => 'ath', 'AT3G62040' => 'ath', 'AT5G02230' => 'ath', 'AT5G59480' => 'ath', 'AT5G59490' => 'ath', 'ATR0332G060' => 'atr', 'ATR0559G190' => 'atr', 'ATR0693G294' => 'atr', 'Atru.chr3.3975' => 'acertr', 'Atru.chr3.3976' => 'acertr', 'Atru.chr3.3977' => 'acertr', 'Atru.chr4.2498' => 'acertr', 'Atru.chr5.838' => 'acertr', 'Atru.chr8.1990' => 'acertr', 'Atru.chr8.1991' => 'acertr', 'Atru.chr8.1992' => 'acertr', 'AUR62001759' => 'cqu', 'AUR62009545' => 'cqu', 'AUR62010474' => 'cqu', 'AUR62025820' => 'cqu', 'AUR62030422' => 'cqu', 'AUR62033605' => 'cqu', 'AUR62038615' => 'cqu', 'AUR62041347' => 'cqu', 'BcaB01g04574' => 'bca', 'BcaB02g09263' => 'bca', 'BcaB02g10453' => 'bca', 'BcaB05g22513' => 'bca', 'BcaB08g36253' => 'bca', 'BcaB08g36254' => 'bca', 'BcaC01g06519' => 'bca', 'BcaC02g11889' => 'bca', 'BcaC03g14010' => 'bca', 'BcaC03g18439' => 'bca', 'BcaC04g19765' => 'bca', 'BcaC09g48432' => 'bca', 'BcaNung07302' => 'bca', 'BolC2t06040H' => 'bol', 'BolC2t07346H' => 'bol', 'BolC3t13817H' => 'bol', 'BolC4t22625H' => 'bol', 'BolC4t23297H' => 'bol', 'BolC8t51278H' => 'bol', 'BolC9t58050H' => 'bol', 'BolC9t58051H' => 'bol', 'BolC9t60163H' => 'bol', 'BraA02t04712Z' => 'bra', 'BraA02t05791Z' => 'bra', 'BraA03t10483Z' => 'bra', 'BraA05t19795Z' => 'bra', 'BraA05t20276Z' => 'bra', 'BraA09t40827Z' => 'bra', 'BraA10t43750Z' => 'bra', 'BraA10t43751Z' => 'bra', 'BraA10t45370Z' => 'bra', 'C02p00400' => 'bna', 'C02p12460' => 'bna', 'C03p13680' => 'bna', 'C04p10270' => 'bna', 'C04p17500' => 'bna', 'C08p37010' => 'bna', 'C09p51880' => 'bna', 'C09p51890' => 'bna', 'C09p74300' => 'bna', 'CAN.G179.26' => 'can', 'CAN.G3384.1' => 'can', 'CAN.G394.68' => 'can', 'CAN.G907.13' => 'can', 'CANSAT11G0012' => 'cansat', 'CANSAT25G1586' => 'cansat', 'CANSAT35G0735' => 'cansat', 'CANSAT54G0556' => 'cansat', 'CANSAT64G0356' => 'cansat', 'CANSAT78G2042' => 'cansat', 'CARHR125920' => 'chi', 'CARHR131910' => 'chi', 'CARHR172390' => 'chi', 'CARHR211140' => 'chi', 'CARHR285850' => 'chi', 'CARHR285860' => 'chi', 'Carub.0004s1347' => 'cru', 'Carub.0004s1960' => 'cru', 'Carub.0005s2880' => 'cru', 'Carub.0006s0107' => 'cru', 'Carub.0008s2015' => 'cru', 'Carub.0008s2016' => 'cru', 'Carub.0008s2017' => 'cru', 'Ca_01315_v3' => 'car', 'Ca_05063_v3' => 'car', 'Ca_10231_v3' => 'car', 'Ca_10913_v3' => 'car', 'Ca_19156_v3' => 'car', 'Ca_23644_v3' => 'car', 'Ca_26735_v3' => 'car', 'Cc01_g13130' => 'ccan', 'Cc02_g21690' => 'ccan', 'Cc03_g03600' => 'ccan', 'Cc06_g02510' => 'ccan', 'CDE02G1265' => 'cde', 'CDE05G0415' => 'cde', 'CDE08G1082' => 'cde', 'Cfa005780' => 'cfa', 'Cfa011522' => 'cfa', 'Cfa011523' => 'cfa', 'Cfa015627' => 'cfa', 'Cfa017359' => 'cfa', 'Ciclev10005687m.g' => 'ccl', 'Ciclev10012173m.g' => 'ccl', 'Ciclev10021621m.g' => 'ccl', 'Ciclev10028968m.g' => 'ccl', 'Ciclev10029907m.g' => 'ccl', 'CiPaw.01G164800' => 'cil', 'CiPaw.07G083700' => 'cil', 'CiPaw.07G127000' => 'cil', 'CiPaw.07G136900' => 'cil', 'CiPaw.08G081700' => 'cil', 'CiPaw.09G194600' => 'cil', 'CiPaw.10G146500' => 'cil', 'CiPaw.13G091500' => 'cil', 'CiPaw.13G091600' => 'cil', 'ClCG00G003390' => 'cla', 'ClCG01G007220' => 'cla', 'ClCG03G001370' => 'cla', 'ClCG04G008100' => 'cla', 'ClCG06G006110' => 'cla', 'ClCG06G006130' => 'cla', 'ClCG10G021210' => 'cla', 'COL.COLO4_07648' => 'col', 'COL.COLO4_07650' => 'col', 'COL.COLO4_07651' => 'col', 'COL.COLO4_14780' => 'col', 'COL.COLO4_18546' => 'col', 'COL.COLO4_18547' => 'col', 'COL.COLO4_23103' => 'col', 'COL.COLO4_30419' => 'col', 'COL.COLO4_34232' => 'col', 'Cpa.g.sc169.20' => 'cpa', 'Cpa.g.sc57.45' => 'cpa', 'Cpa.g.sc58.124' => 'cpa', 'Cpa.g.sc58.125' => 'cpa', 'Cpa.g.sc81.118' => 'cpa', 'Cpa.g.sc81.119' => 'cpa', 'Cre12.g524700' => 'cre', 'CsaV3_1G034430' => 'csa', 'CsaV3_1G034440' => 'csa', 'CsaV3_1G034450' => 'csa', 'CsaV3_3G034830' => 'csa', 'CsaV3_4G025090' => 'csa', 'CsaV3_5G018660' => 'csa', 'CsaV3_6G038160' => 'csa', 'CSS0003447' => 'camsi', 'CSS0017840' => 'camsi', 'CSS0019260' => 'camsi', 'CSS0040375' => 'camsi', 'CSS0042533' => 'camsi', 'DCAR_005960' => 'dca', 'DCAR_012104' => 'dca', 'DCAR_012105' => 'dca', 'DCAR_012293' => 'dca', 'DCAR_015632' => 'dca', 'DCAR_024602' => 'dca', 'DCAR_028752' => 'dca', 'Dinv06261' => 'din', 'Dinv13982' => 'din', 'Dinv17029' => 'din', 'Dinv18463' => 'din', 'Dinv33181' => 'din', 'Dinv35585' => 'din', 'Dinv37161' => 'din', 'Dinv42977' => 'din', 'Dinv43122' => 'din', 'Dinv44517' => 'din', 'Duzib093G0256' => 'dzi', 'Duzib106G1254' => 'dzi', 'Duzib128G1789' => 'dzi', 'Duzib133G0633' => 'dzi', 'Duzib138G0510' => 'dzi', 'Duzib150G1084' => 'dzi', 'Duzib168G0488' => 'dzi', 'Duzib168G1523' => 'dzi', 'Duzib170G0133' => 'dzi', 'ECA234G1433' => 'eca', 'ECA236G1432' => 'eca', 'ECA236G2256' => 'eca', 'ECA236G2365' => 'eca', 'ECA236G4830' => 'eca', 'ECA248G1505' => 'eca', 'EL10Ac3g06431' => 'bvu', 'EL10Ac5g12577' => 'bvu', 'EL10Ac6g13533' => 'bvu', 'EL10Ac7g16045' => 'bvu', 'Eucgr.A01281' => 'egr', 'Eucgr.B02326' => 'egr', 'Eucgr.H03532' => 'egr', 'Eucgr.K00553' => 'egr', 'Eucgr.K03116' => 'egr', 'FAN02G3963' => 'fan', 'FAN05G0438' => 'fan', 'FAN09G2434' => 'fan', 'FAN12G3984' => 'fan', 'FAN14G0798' => 'fan', 'FAN17G0652' => 'fan', 'FAN19G1988' => 'fan', 'FAN22G0632' => 'fan', 'FAN23G0387' => 'fan', 'FAN26G1323' => 'fan', 'FAN28G0666' => 'fan', 'FvH4_1g26080' => 'fve', 'FvH4_3g36780' => 'fve', 'FvH4_4g15270' => 'fve', 'FvH4_6g13490' => 'fve', 'Glyma.01G098700' => 'gma', 'Glyma.03G065900' => 'gma', 'Glyma.03G073754' => 'gma', 'Glyma.03G073758' => 'gma', 'Glyma.03G083200' => 'gma', 'Glyma.03G225500' => 'gma', 'Glyma.05G037766' => 'gma', 'Glyma.07G133500' => 'gma', 'Glyma.10G139400' => 'gma', 'Glyma.10G248900' => 'gma', 'Glyma.11G137800' => 'gma', 'Glyma.12G061300' => 'gma', 'Glyma.13G337900' => 'gma', 'Glyma.15G036600' => 'gma', 'Glyma.18G182800' => 'gma', 'Glyma.19G222500' => 'gma', 'Glyma.20G144800' => 'gma', 'Gohir.A01G222000' => 'ghi', 'Gohir.A03G044000' => 'ghi', 'Gohir.A03G044100' => 'ghi', 'Gohir.A04G083100' => 'ghi', 'Gohir.A07G127200' => 'ghi', 'Gohir.A07G132400' => 'ghi', 'Gohir.A08G000700' => 'ghi', 'Gohir.A11G327300' => 'ghi', 'Gohir.D01G211500' => 'ghi', 'Gohir.D03G123400' => 'ghi', 'Gohir.D03G123500' => 'ghi', 'Gohir.D04G121800' => 'ghi', 'Gohir.D07G131500' => 'ghi', 'Gohir.D07G136600' => 'ghi', 'Gohir.D08G011600' => 'ghi', 'Gohir.D11G346200' => 'ghi', 'Gorai.001G142800' => 'gra', 'Gorai.001G148700' => 'gra', 'Gorai.002G257300' => 'gra', 'Gorai.003G130000' => 'gra', 'Gorai.003G130100' => 'gra', 'Gorai.004G005300' => 'gra', 'Gorai.007G376500' => 'gra', 'Gorai.012G104700' => 'gra', 'GSVIVG01017946001' => 'vvi', 'GSVIVG01024928001' => 'vvi', 'GSVIVG01028227001' => 'vvi', 'GSVIVG01034151001' => 'vvi', 'HanXRQChr05g0135031' => 'han', 'HanXRQChr05g0135041' => 'han', 'HanXRQChr05g0140021' => 'han', 'HanXRQChr06g0178981' => 'han', 'HanXRQChr07g0188251' => 'han', 'HanXRQChr08g0235311' => 'han', 'HanXRQChr09g0271011' => 'han', 'HanXRQChr10g0293321' => 'han', 'HanXRQChr13g0388171' => 'han', 'Haze_00916' => 'cav', 'Haze_05063' => 'cav', 'Haze_20814' => 'cav', 'Haze_24128' => 'cav', 'Hma1.2p1_0745F.1_g212010' => 'hma', 'Hma1.2p1_0757F.1_g213260' => 'hma', 'Hma1.2p1_0936F.1_g238840' => 'hma', 'Hma1.2p1_1735F.1_g299890' => 'hma', 'Hma1.2p1_1861F.1_g305685' => 'hma', 'HPP92_003397' => 'vpl', 'HPP92_012597' => 'vpl', 'HPP92_015520' => 'vpl', 'HPP92_015539' => 'vpl', 'HPP92_020373' => 'vpl', 'Hund04938' => 'sun', 'Hund10677' => 'sun', 'Hund11033' => 'sun', 'Hund12155' => 'sun', 'Lalb_Chr01g0022551' => 'lal', 'Lalb_Chr03g0042341' => 'lal', 'Lalb_Chr07g0192931' => 'lal', 'Lalb_Chr12g0209551' => 'lal', 'Lalb_Chr19g0125251' => 'lal', 'Lalb_Chr19g0137891' => 'lal', 'Lalb_Chr21g0304641' => 'lal', 'Lalb_Chr21g0309881' => 'lal', 'Lj1A5T12' => 'lonja', 'Lj1C148G10' => 'lonja', 'Lj2A93T83' => 'lonja', 'Lj3A738G68' => 'lonja', 'Lj3C966T1' => 'lonja', 'Lj3g0018958' => 'lja', 'Lj3g0021831' => 'lja', 'Lj3g0025443' => 'lja', 'Lj4g0026809' => 'lja', 'Lj5g0012558' => 'lja', 'Lj5g0021586' => 'lja', 'Lsat_1_v5_gn_5_156840' => 'lsa', 'Lsat_1_v5_gn_8_73460' => 'lsa', 'Lsat_1_v5_gn_8_73481' => 'lsa', 'Lsat_1_v5_gn_9_31601' => 'lsa', 'Lsat_1_v5_gn_9_77320' => 'lsa', 'Manes.01G171300' => 'mes', 'Manes.01G171400' => 'mes', 'Manes.01G236100' => 'mes', 'Manes.02G130500' => 'mes', 'Manes.02G130600' => 'mes', 'Manes.03G180200' => 'mes', 'Manes.05G007000' => 'mes', 'Manes.08G084400' => 'mes', 'Manes.09G092600' => 'mes', 'Manes.15G027900' => 'mes', 'MBI04_g40948_MAGBIO' => 'mbi', 'MBI14_g12123_MAGBIO' => 'mbi', 'MBI18_g28915_MAGBIO' => 'mbi', 'MCO09G053' => 'mco', 'MCO11G782' => 'mco', 'MCO15G215' => 'mco', 'MD03G1088500' => 'mdo', 'MD03G1088600' => 'mdo', 'MD04G1130800' => 'mdo', 'MD09G1291700' => 'mdo', 'MD11G1097500' => 'mdo', 'MD11G1097600' => 'mdo', 'MD12G1143900' => 'mdo', 'MD13G1191400' => 'mdo', 'MD16G1191500' => 'mdo', 'Medtr1g085570' => 'mtr', 'Medtr1g104610' => 'mtr', 'Medtr2g097520' => 'mtr', 'Medtr4g021800' => 'mtr', 'Medtr4g021825' => 'mtr', 'Medtr4g064270' => 'mtr', 'Medtr4g064380' => 'mtr', 'Medtr7g062150' => 'mtr', 'MELO3C003138.2' => 'cme', 'MELO3C005187.2' => 'cme', 'MELO3C009252.2' => 'cme', 'MELO3C014481.2' => 'cme', 'MELO3C020616.2' => 'cme', 'MELO3C020617.2' => 'cme', 'MELO3C020618.2' => 'cme', 'Migut.G00328' => 'egut', 'Migut.J00320' => 'egut', 'Migut.L01000' => 'egut', 'Migut.L01953' => 'egut', 'MSTRG.10253' => 'ama', 'MSTRG.19077' => 'ama', 'MSTRG.26780' => 'ama', 'MSTRG.4023' => 'ama', 'MSTRG.5655' => 'ama', 'MSTRG.9992' => 'ama', 'Nitab4.5_0000043g0310' => 'nta', 'Nitab4.5_0000463g0080' => 'nta', 'Nitab4.5_0000705g0170' => 'nta', 'Nitab4.5_0001326g0060' => 'nta', 'Nitab4.5_0001628g0030' => 'nta', 'Nitab4.5_0002103g0110' => 'nta', 'Nitab4.5_0002946g0030' => 'nta', 'Nitab4.5_0004639g0030' => 'nta', 'Nn2g11149' => 'nnu', 'Nn2g13389' => 'nnu', 'Nn4g25326' => 'nnu', 'Nn4g26290' => 'nnu', 'Nn5g29865' => 'nnu', 'Oeu004163.1' => 'oeu', 'Oeu006901.1' => 'oeu', 'Oeu010096.1' => 'oeu', 'Oeu024340.1' => 'oeu', 'Oeu048369.1' => 'oeu', 'Os01g0973000' => 'osa', 'Os03g0273800' => 'osa', 'Os03g0701200' => 'osa', 'Os03g0834050' => 'osa', 'Os07g0634400' => 'osa', 'Peaxi162Scf00092g01414' => 'pax', 'Peaxi162Scf00165g00818' => 'pax', 'Peaxi162Scf00309g00516' => 'pax', 'Peaxi162Scf00774g00218' => 'pax', 'PGR004G1824' => 'pgr', 'PGR004G2606' => 'pgr', 'PGR031G2716' => 'pgr', 'PGR102G2460' => 'pgr', 'PGR142G2599' => 'pgr', 'PGSC0003DMG400000843' => 'stu', 'PGSC0003DMG400008829' => 'stu', 'PGSC0003DMG400030418' => 'stu', 'PGSC0003DMG400031834' => 'stu', 'PGSC0003DMG401028300' => 'stu', 'PGSC0003DMG402028300' => 'stu', 'Phvul.001G219300' => 'pvu', 'Phvul.007G056000' => 'pvu', 'Phvul.007G208000' => 'pvu', 'Phvul.008G119500' => 'pvu', 'Phvul.010G011200' => 'pvu', 'Phvul.010G014800' => 'pvu', 'Phvul.011G062900' => 'pvu', 'Phvul.L007043' => 'pvu', 'Potri.001G242300' => 'ptr', 'Potri.002G185300' => 'ptr', 'Potri.006G086900' => 'ptr', 'Potri.008G151700' => 'ptr', 'Potri.009G033500' => 'ptr', 'Potri.010G089300' => 'ptr', 'Potri.014G110800' => 'ptr', 'Pp3c27_8130' => 'ppa', 'Pp3c6_27410' => 'ppa', 'PRCOL_00001659' => 'pco', 'PRCOL_00001927' => 'pco', 'PRCOL_00003649' => 'pco', 'Prupe.1G011600' => 'ppe', 'Prupe.3G000800' => 'ppe', 'Prupe.3G001100' => 'ppe', 'Prupe.6G072700' => 'ppe', 'Prupe.6G072800' => 'ppe', 'Prupe.6G257300' => 'ppe', 'Prupe.8G033000' => 'ppe', 'Psat0s2633g0080' => 'psa', 'Psat0s3396g0080' => 'psa', 'Psat0s3396g0200' => 'psa', 'Psat3g139080' => 'psa', 'Psat5g285080' => 'psa', 'Psat6g157760' => 'psa', 'Psat6g208440' => 'psa', 'Psat7g215320' => 'psa', 'Psat7g215400' => 'psa', 'Psat7g235600' => 'psa', 'Psat7g235760' => 'psa', 'PSO063G4603' => 'pso', 'PSO210G0182' => 'pso', 'PSO210G0196' => 'pso', 'PSO339G0394' => 'pso', 'PSO339G4127' => 'pso', 'PSO513G0064' => 'pso', 'PSO761G0079' => 'pso', 'QL01p031003' => 'qlo', 'QL01p031078' => 'qlo', 'QL06p003004' => 'qlo', 'QL07p048731' => 'qlo', 'QL09p037427' => 'qlo', 'RcHm_v2.0_Chr3g0466361' => 'rch', 'RcHm_v2.0_Chr3g0485571' => 'rch', 'RcHm_v2.0_Chr4g0416551' => 'rch', 'RcHm_v2.0_Chr5g0065831' => 'rch', 'Rhsim01G0230500' => 'rsi', 'Rhsim05G0194000' => 'rsi', 'Rhsim08G0250400' => 'rsi', 'Sabra02G0131000' => 'sbr', 'Sabra06G0066300' => 'sbr', 'Sabra08G0115500' => 'sbr', 'Sabra09G0023900' => 'sbr', 'Sabra10G0054000' => 'sbr', 'Sabra14G0081500' => 'sbr', 'Sabra16G0147100' => 'sbr', 'SalBow2G2957' => 'sbo', 'SalBow4G3320' => 'sbo', 'SalBow8G1894' => 'sbo', 'Sc07g0007950' => 'sci', 'Sc12g0001360' => 'sci', 'Sc13g0004330' => 'sci', 'Sc20g0005010' => 'sci', 'Sed0000361' => 'sed', 'Sed0001706' => 'sed', 'Sed0002422' => 'sed', 'Sed0004029' => 'sed', 'Sed0004602' => 'sed', 'Sed0004943' => 'sed', 'Sed0008646' => 'sed', 'Sed0023313' => 'sed', 'Sed0024843' => 'sed', 'SEGI_00081' => 'sgi', 'SEGI_00947' => 'sgi', 'SEGI_04046' => 'sgi', 'SEGI_06880' => 'sgi', 'SEGI_09736' => 'sgi', 'SEGI_12741' => 'sgi', 'SEGI_14530' => 'sgi', 'SEGI_20705' => 'sgi', 'SEGI_26088' => 'sgi', 'SEGI_28323' => 'sgi', 'SEGI_33343' => 'sgi', 'SGA_v2.0_scaffold126G33775' => 'sas', 'SGA_v2.0_scaffold2G01337' => 'sas', 'SGA_v2.0_scaffold38G15006' => 'sas', 'SGA_v2.0_scaffold39G15264' => 'sas', 'SGA_v2.0_scaffold453G51880' => 'sas', 'SHI12696' => 'shi', 'SMO367G1096' => 'smo', 'Solyc01g068630.3' => 'sly', 'Solyc05g011880.3' => 'sly', 'Solyc06g076300.3' => 'sly', 'Solyc09g010940.4' => 'sly', 'Solyc09g075890.3' => 'sly', 'Sopen01g030560' => 'spe', 'Sopen05g006630' => 'spe', 'Sopen06g032720' => 'spe', 'Sopen09g005660' => 'spe', 'Sopen09g030690' => 'spe', 'Sp4g14540' => 'spa', 'Sp4g20030' => 'spa', 'Sp5g01320' => 'spa', 'Sp6g21170' => 'spa', 'Sp6g21180' => 'spa', 'Sp6g21190' => 'spa', 'Sp6g40220' => 'spa', 'TAR362G0122' => 'tar', 'TAR362G1338' => 'tar', 'TAR369G0590' => 'tar', 'TAR371G0824' => 'tar', 'TAR622G1429' => 'tar', 'TAR623G0734' => 'tar', 'TAR625G0441' => 'tar', 'TAR629G0976' => 'tar', 'TAR633G1195' => 'tar', 'TAR636G2660' => 'tar', 'THA.LOC104799440' => 'tha', 'THA.LOC104800966' => 'tha', 'THA.LOC104806559' => 'tha', 'THA.LOC104810765' => 'tha', 'THA.LOC104816266' => 'tha', 'THA.LOC104817419' => 'tha', 'THA.LOC104827021' => 'tha', 'Thecc.01G327400' => 'tca', 'Thecc.04G229200' => 'tca', 'Thecc.05G037400' => 'tca', 'Thecc.09G318600' => 'tca', 'Thecc.09G318700' => 'tca', 'Thhalv10006238m.g' => 'esa', 'Thhalv10014321m.g' => 'esa', 'Thhalv10014335m.g' => 'esa', 'Thhalv10015826m.g' => 'esa', 'Thhalv10017107m.g' => 'esa', 'Thhalv10017180m.g' => 'esa', 'Thhalv10029339m.g' => 'esa', 'TPR.G1699' => 'tpr', 'TPR.G23609' => 'tpr', 'TPR.G3081' => 'tpr', 'TPR.G40397' => 'tpr', 'TPR.G5522' => 'tpr', 'TPR.G5618' => 'tpr', 'TPR.G5626' => 'tpr', 'TWI09G1632' => 'twi', 'TWI23G1230' => 'twi', 'TWI53G1064' => 'twi', 'TWI59G0751' => 'twi', 'TWI74G0947' => 'twi', 'TWI77G0337' => 'twi', 'TWI79G1254' => 'twi', 'unitig_0.g2341' => 'ugi', 'unitig_26.g10006' => 'ugi', 'unitig_26.g10008' => 'ugi', 'unitig_26.g9192' => 'ugi', 'vmacro14547' => 'vma', 'vmacro15333' => 'vma', 'vmacro18743' => 'vma', 'vmacro20166' => 'vma', 'VMungo0331G0523' => 'vmu', 'VMungo0331G1202' => 'vmu', 'VMungo0720G1228' => 'vmu', 'VMungo0720G1514' => 'vmu', 'VMungo1080G0169' => 'vmu', 'VMungo1127G1475' => 'vmu', 'VMungo1383G1208' => 'vmu', 'VMungo1383G1698' => 'vmu', 'Zm00001eb012270' => 'zma', 'Zm00001eb054100' => 'zma', 'Zm00001eb063350' => 'zma', 'Zm00001eb328560' => 'zma', 'Zm00001eb342820' => 'zma', 'Zm00001eb362210' => 'zma', 'Zm00001eb397730' => 'zma', 'Zm00001eb399750' => 'zma' ) $gf_id = 'HOM05D000959' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000959' ) $data_identifier = 'HOM05D000959' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 5, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 5, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 10, 'mbi' => (int) 3, 'mco' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 2, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 3, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 11, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399750' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000959', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '622', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p07100' => 'bna', 'A03p11720' => 'bna', 'A05p08300' => 'bna', 'A05p13380' => 'bna', 'A09p54130' => 'bna', 'A10p16690' => 'bna', 'A10p16700' => 'bna', 'A10p33390' => 'bna', 'Aa31LG10G16020' => 'aar', 'Aa31LG1G11810' => 'aar', 'Aa31LG1G11830' => 'aar', 'Aa31LG1G22510' => 'aar', 'Aa31LG5G4890' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5793' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2310' => 'aag', 'Actinidia08499' => 'ach', 'Actinidia11262' => 'ach', 'Actinidia23926' => 'ach', 'Actinidia34420' => 'ach', 'Actinidia36970' => 'ach', 'Ah.02g111220' => 'amhyb', 'Ah.15g097750' => 'amhyb', 'AL4G27500' => 'aly', 'AL6G11470' => 'aly', 'AL8G35950' => 'aly', 'AL8G35960' => 'aly', 'AL8G35970' => 'aly', 'Aqoxy1G00912' => 'aox', 'Aqoxy2G02253' => 'aox', 'Aqoxy2G02411' => 'aox', 'Aqoxy5G00485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BZ66YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K8ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM4FUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6BF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HFV7XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25JBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0YNNV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MAKK6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P70IT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP2Z6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V61LZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YWP64R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3S9AI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7PGHH' => 'arhy', 'AT2G32150' => 'ath', 'AT3G62040' => 'ath', 'AT5G02230' => 'ath', 'AT5G59480' => 'ath', 'AT5G59490' => 'ath', 'ATR0332G060' => 'atr', 'ATR0559G190' => 'atr', 'ATR0693G294' => 'atr', 'Atru.chr3.3975' => 'acertr', 'Atru.chr3.3976' => 'acertr', 'Atru.chr3.3977' => 'acertr', 'Atru.chr4.2498' => 'acertr', 'Atru.chr5.838' => 'acertr', 'Atru.chr8.1990' => 'acertr', 'Atru.chr8.1991' => 'acertr', 'Atru.chr8.1992' => 'acertr', 'AUR62001759' => 'cqu', 'AUR62009545' => 'cqu', 'AUR62010474' => 'cqu', 'AUR62025820' => 'cqu', 'AUR62030422' => 'cqu', 'AUR62033605' => 'cqu', 'AUR62038615' => 'cqu', 'AUR62041347' => 'cqu', 'BcaB01g04574' => 'bca', 'BcaB02g09263' => 'bca', 'BcaB02g10453' => 'bca', 'BcaB05g22513' => 'bca', 'BcaB08g36253' => 'bca', 'BcaB08g36254' => 'bca', 'BcaC01g06519' => 'bca', 'BcaC02g11889' => 'bca', 'BcaC03g14010' => 'bca', 'BcaC03g18439' => 'bca', 'BcaC04g19765' => 'bca', 'BcaC09g48432' => 'bca', 'BcaNung07302' => 'bca', 'BolC2t06040H' => 'bol', 'BolC2t07346H' => 'bol', 'BolC3t13817H' => 'bol', 'BolC4t22625H' => 'bol', 'BolC4t23297H' => 'bol', 'BolC8t51278H' => 'bol', 'BolC9t58050H' => 'bol', 'BolC9t58051H' => 'bol', 'BolC9t60163H' => 'bol', 'BraA02t04712Z' => 'bra', 'BraA02t05791Z' => 'bra', 'BraA03t10483Z' => 'bra', 'BraA05t19795Z' => 'bra', 'BraA05t20276Z' => 'bra', 'BraA09t40827Z' => 'bra', 'BraA10t43750Z' => 'bra', 'BraA10t43751Z' => 'bra', 'BraA10t45370Z' => 'bra', 'C02p00400' => 'bna', 'C02p12460' => 'bna', 'C03p13680' => 'bna', 'C04p10270' => 'bna', 'C04p17500' => 'bna', 'C08p37010' => 'bna', 'C09p51880' => 'bna', 'C09p51890' => 'bna', 'C09p74300' => 'bna', 'CAN.G179.26' => 'can', 'CAN.G3384.1' => 'can', 'CAN.G394.68' => 'can', 'CAN.G907.13' => 'can', 'CANSAT11G0012' => 'cansat', 'CANSAT25G1586' => 'cansat', 'CANSAT35G0735' => 'cansat', 'CANSAT54G0556' => 'cansat', 'CANSAT64G0356' => 'cansat', 'CANSAT78G2042' => 'cansat', 'CARHR125920' => 'chi', 'CARHR131910' => 'chi', 'CARHR172390' => 'chi', 'CARHR211140' => 'chi', 'CARHR285850' => 'chi', 'CARHR285860' => 'chi', 'Carub.0004s1347' => 'cru', 'Carub.0004s1960' => 'cru', 'Carub.0005s2880' => 'cru', 'Carub.0006s0107' => 'cru', 'Carub.0008s2015' => 'cru', 'Carub.0008s2016' => 'cru', 'Carub.0008s2017' => 'cru', 'Ca_01315_v3' => 'car', 'Ca_05063_v3' => 'car', 'Ca_10231_v3' => 'car', 'Ca_10913_v3' => 'car', 'Ca_19156_v3' => 'car', 'Ca_23644_v3' => 'car', 'Ca_26735_v3' => 'car', 'Cc01_g13130' => 'ccan', 'Cc02_g21690' => 'ccan', 'Cc03_g03600' => 'ccan', 'Cc06_g02510' => 'ccan', 'CDE02G1265' => 'cde', 'CDE05G0415' => 'cde', 'CDE08G1082' => 'cde', 'Cfa005780' => 'cfa', 'Cfa011522' => 'cfa', 'Cfa011523' => 'cfa', 'Cfa015627' => 'cfa', 'Cfa017359' => 'cfa', 'Ciclev10005687m.g' => 'ccl', 'Ciclev10012173m.g' => 'ccl', 'Ciclev10021621m.g' => 'ccl', 'Ciclev10028968m.g' => 'ccl', 'Ciclev10029907m.g' => 'ccl', 'CiPaw.01G164800' => 'cil', 'CiPaw.07G083700' => 'cil', 'CiPaw.07G127000' => 'cil', 'CiPaw.07G136900' => 'cil', 'CiPaw.08G081700' => 'cil', 'CiPaw.09G194600' => 'cil', 'CiPaw.10G146500' => 'cil', 'CiPaw.13G091500' => 'cil', 'CiPaw.13G091600' => 'cil', 'ClCG00G003390' => 'cla', 'ClCG01G007220' => 'cla', 'ClCG03G001370' => 'cla', 'ClCG04G008100' => 'cla', 'ClCG06G006110' => 'cla', 'ClCG06G006130' => 'cla', 'ClCG10G021210' => 'cla', 'COL.COLO4_07648' => 'col', 'COL.COLO4_07650' => 'col', 'COL.COLO4_07651' => 'col', 'COL.COLO4_14780' => 'col', 'COL.COLO4_18546' => 'col', 'COL.COLO4_18547' => 'col', 'COL.COLO4_23103' => 'col', 'COL.COLO4_30419' => 'col', 'COL.COLO4_34232' => 'col', 'Cpa.g.sc169.20' => 'cpa', 'Cpa.g.sc57.45' => 'cpa', 'Cpa.g.sc58.124' => 'cpa', 'Cpa.g.sc58.125' => 'cpa', 'Cpa.g.sc81.118' => 'cpa', 'Cpa.g.sc81.119' => 'cpa', 'Cre12.g524700' => 'cre', 'CsaV3_1G034430' => 'csa', 'CsaV3_1G034440' => 'csa', 'CsaV3_1G034450' => 'csa', 'CsaV3_3G034830' => 'csa', 'CsaV3_4G025090' => 'csa', 'CsaV3_5G018660' => 'csa', 'CsaV3_6G038160' => 'csa', 'CSS0003447' => 'camsi', 'CSS0017840' => 'camsi', 'CSS0019260' => 'camsi', 'CSS0040375' => 'camsi', 'CSS0042533' => 'camsi', 'DCAR_005960' => 'dca', 'DCAR_012104' => 'dca', 'DCAR_012105' => 'dca', 'DCAR_012293' => 'dca', 'DCAR_015632' => 'dca', 'DCAR_024602' => 'dca', 'DCAR_028752' => 'dca', 'Dinv06261' => 'din', 'Dinv13982' => 'din', 'Dinv17029' => 'din', 'Dinv18463' => 'din', 'Dinv33181' => 'din', 'Dinv35585' => 'din', 'Dinv37161' => 'din', 'Dinv42977' => 'din', 'Dinv43122' => 'din', 'Dinv44517' => 'din', 'Duzib093G0256' => 'dzi', 'Duzib106G1254' => 'dzi', 'Duzib128G1789' => 'dzi', 'Duzib133G0633' => 'dzi', 'Duzib138G0510' => 'dzi', 'Duzib150G1084' => 'dzi', 'Duzib168G0488' => 'dzi', 'Duzib168G1523' => 'dzi', 'Duzib170G0133' => 'dzi', 'ECA234G1433' => 'eca', 'ECA236G1432' => 'eca', 'ECA236G2256' => 'eca', 'ECA236G2365' => 'eca', 'ECA236G4830' => 'eca', 'ECA248G1505' => 'eca', 'EL10Ac3g06431' => 'bvu', 'EL10Ac5g12577' => 'bvu', 'EL10Ac6g13533' => 'bvu', 'EL10Ac7g16045' => 'bvu', 'Eucgr.A01281' => 'egr', 'Eucgr.B02326' => 'egr', 'Eucgr.H03532' => 'egr', 'Eucgr.K00553' => 'egr', 'Eucgr.K03116' => 'egr', 'FAN02G3963' => 'fan', 'FAN05G0438' => 'fan', 'FAN09G2434' => 'fan', 'FAN12G3984' => 'fan', 'FAN14G0798' => 'fan', 'FAN17G0652' => 'fan', 'FAN19G1988' => 'fan', 'FAN22G0632' => 'fan', 'FAN23G0387' => 'fan', 'FAN26G1323' => 'fan', 'FAN28G0666' => 'fan', 'FvH4_1g26080' => 'fve', 'FvH4_3g36780' => 'fve', 'FvH4_4g15270' => 'fve', 'FvH4_6g13490' => 'fve', 'Glyma.01G098700' => 'gma', 'Glyma.03G065900' => 'gma', 'Glyma.03G073754' => 'gma', 'Glyma.03G073758' => 'gma', 'Glyma.03G083200' => 'gma', 'Glyma.03G225500' => 'gma', 'Glyma.05G037766' => 'gma', 'Glyma.07G133500' => 'gma', 'Glyma.10G139400' => 'gma', 'Glyma.10G248900' => 'gma', 'Glyma.11G137800' => 'gma', 'Glyma.12G061300' => 'gma', 'Glyma.13G337900' => 'gma', 'Glyma.15G036600' => 'gma', 'Glyma.18G182800' => 'gma', 'Glyma.19G222500' => 'gma', 'Glyma.20G144800' => 'gma', 'Gohir.A01G222000' => 'ghi', 'Gohir.A03G044000' => 'ghi', 'Gohir.A03G044100' => 'ghi', 'Gohir.A04G083100' => 'ghi', 'Gohir.A07G127200' => 'ghi', 'Gohir.A07G132400' => 'ghi', 'Gohir.A08G000700' => 'ghi', 'Gohir.A11G327300' => 'ghi', 'Gohir.D01G211500' => 'ghi', 'Gohir.D03G123400' => 'ghi', 'Gohir.D03G123500' => 'ghi', 'Gohir.D04G121800' => 'ghi', 'Gohir.D07G131500' => 'ghi', 'Gohir.D07G136600' => 'ghi', 'Gohir.D08G011600' => 'ghi', 'Gohir.D11G346200' => 'ghi', 'Gorai.001G142800' => 'gra', 'Gorai.001G148700' => 'gra', 'Gorai.002G257300' => 'gra', 'Gorai.003G130000' => 'gra', 'Gorai.003G130100' => 'gra', 'Gorai.004G005300' => 'gra', 'Gorai.007G376500' => 'gra', 'Gorai.012G104700' => 'gra', 'GSVIVG01017946001' => 'vvi', 'GSVIVG01024928001' => 'vvi', 'GSVIVG01028227001' => 'vvi', 'GSVIVG01034151001' => 'vvi', 'HanXRQChr05g0135031' => 'han', 'HanXRQChr05g0135041' => 'han', 'HanXRQChr05g0140021' => 'han', 'HanXRQChr06g0178981' => 'han', 'HanXRQChr07g0188251' => 'han', 'HanXRQChr08g0235311' => 'han', 'HanXRQChr09g0271011' => 'han', 'HanXRQChr10g0293321' => 'han', 'HanXRQChr13g0388171' => 'han', 'Haze_00916' => 'cav', 'Haze_05063' => 'cav', 'Haze_20814' => 'cav', 'Haze_24128' => 'cav', 'Hma1.2p1_0745F.1_g212010' => 'hma', 'Hma1.2p1_0757F.1_g213260' => 'hma', 'Hma1.2p1_0936F.1_g238840' => 'hma', 'Hma1.2p1_1735F.1_g299890' => 'hma', 'Hma1.2p1_1861F.1_g305685' => 'hma', 'HPP92_003397' => 'vpl', 'HPP92_012597' => 'vpl', 'HPP92_015520' => 'vpl', 'HPP92_015539' => 'vpl', 'HPP92_020373' => 'vpl', 'Hund04938' => 'sun', 'Hund10677' => 'sun', 'Hund11033' => 'sun', 'Hund12155' => 'sun', 'Lalb_Chr01g0022551' => 'lal', 'Lalb_Chr03g0042341' => 'lal', 'Lalb_Chr07g0192931' => 'lal', 'Lalb_Chr12g0209551' => 'lal', 'Lalb_Chr19g0125251' => 'lal', 'Lalb_Chr19g0137891' => 'lal', 'Lalb_Chr21g0304641' => 'lal', 'Lalb_Chr21g0309881' => 'lal', 'Lj1A5T12' => 'lonja', 'Lj1C148G10' => 'lonja', 'Lj2A93T83' => 'lonja', 'Lj3A738G68' => 'lonja', 'Lj3C966T1' => 'lonja', 'Lj3g0018958' => 'lja', 'Lj3g0021831' => 'lja', 'Lj3g0025443' => 'lja', 'Lj4g0026809' => 'lja', 'Lj5g0012558' => 'lja', 'Lj5g0021586' => 'lja', 'Lsat_1_v5_gn_5_156840' => 'lsa', 'Lsat_1_v5_gn_8_73460' => 'lsa', 'Lsat_1_v5_gn_8_73481' => 'lsa', 'Lsat_1_v5_gn_9_31601' => 'lsa', 'Lsat_1_v5_gn_9_77320' => 'lsa', 'Manes.01G171300' => 'mes', 'Manes.01G171400' => 'mes', 'Manes.01G236100' => 'mes', 'Manes.02G130500' => 'mes', 'Manes.02G130600' => 'mes', 'Manes.03G180200' => 'mes', 'Manes.05G007000' => 'mes', 'Manes.08G084400' => 'mes', 'Manes.09G092600' => 'mes', 'Manes.15G027900' => 'mes', 'MBI04_g40948_MAGBIO' => 'mbi', 'MBI14_g12123_MAGBIO' => 'mbi', 'MBI18_g28915_MAGBIO' => 'mbi', 'MCO09G053' => 'mco', 'MCO11G782' => 'mco', 'MCO15G215' => 'mco', 'MD03G1088500' => 'mdo', 'MD03G1088600' => 'mdo', 'MD04G1130800' => 'mdo', 'MD09G1291700' => 'mdo', 'MD11G1097500' => 'mdo', 'MD11G1097600' => 'mdo', 'MD12G1143900' => 'mdo', 'MD13G1191400' => 'mdo', 'MD16G1191500' => 'mdo', 'Medtr1g085570' => 'mtr', 'Medtr1g104610' => 'mtr', 'Medtr2g097520' => 'mtr', 'Medtr4g021800' => 'mtr', 'Medtr4g021825' => 'mtr', 'Medtr4g064270' => 'mtr', 'Medtr4g064380' => 'mtr', 'Medtr7g062150' => 'mtr', 'MELO3C003138.2' => 'cme', 'MELO3C005187.2' => 'cme', 'MELO3C009252.2' => 'cme', 'MELO3C014481.2' => 'cme', 'MELO3C020616.2' => 'cme', 'MELO3C020617.2' => 'cme', 'MELO3C020618.2' => 'cme', 'Migut.G00328' => 'egut', 'Migut.J00320' => 'egut', 'Migut.L01000' => 'egut', 'Migut.L01953' => 'egut', 'MSTRG.10253' => 'ama', 'MSTRG.19077' => 'ama', 'MSTRG.26780' => 'ama', 'MSTRG.4023' => 'ama', 'MSTRG.5655' => 'ama', 'MSTRG.9992' => 'ama', 'Nitab4.5_0000043g0310' => 'nta', 'Nitab4.5_0000463g0080' => 'nta', 'Nitab4.5_0000705g0170' => 'nta', 'Nitab4.5_0001326g0060' => 'nta', 'Nitab4.5_0001628g0030' => 'nta', 'Nitab4.5_0002103g0110' => 'nta', 'Nitab4.5_0002946g0030' => 'nta', 'Nitab4.5_0004639g0030' => 'nta', 'Nn2g11149' => 'nnu', 'Nn2g13389' => 'nnu', 'Nn4g25326' => 'nnu', 'Nn4g26290' => 'nnu', 'Nn5g29865' => 'nnu', 'Oeu004163.1' => 'oeu', 'Oeu006901.1' => 'oeu', 'Oeu010096.1' => 'oeu', 'Oeu024340.1' => 'oeu', 'Oeu048369.1' => 'oeu', 'Os01g0973000' => 'osa', 'Os03g0273800' => 'osa', 'Os03g0701200' => 'osa', 'Os03g0834050' => 'osa', 'Os07g0634400' => 'osa', 'Peaxi162Scf00092g01414' => 'pax', 'Peaxi162Scf00165g00818' => 'pax', 'Peaxi162Scf00309g00516' => 'pax', 'Peaxi162Scf00774g00218' => 'pax', 'PGR004G1824' => 'pgr', 'PGR004G2606' => 'pgr', 'PGR031G2716' => 'pgr', 'PGR102G2460' => 'pgr', 'PGR142G2599' => 'pgr', 'PGSC0003DMG400000843' => 'stu', 'PGSC0003DMG400008829' => 'stu', 'PGSC0003DMG400030418' => 'stu', 'PGSC0003DMG400031834' => 'stu', 'PGSC0003DMG401028300' => 'stu', 'PGSC0003DMG402028300' => 'stu', 'Phvul.001G219300' => 'pvu', 'Phvul.007G056000' => 'pvu', 'Phvul.007G208000' => 'pvu', 'Phvul.008G119500' => 'pvu', 'Phvul.010G011200' => 'pvu', 'Phvul.010G014800' => 'pvu', 'Phvul.011G062900' => 'pvu', 'Phvul.L007043' => 'pvu', 'Potri.001G242300' => 'ptr', 'Potri.002G185300' => 'ptr', 'Potri.006G086900' => 'ptr', 'Potri.008G151700' => 'ptr', 'Potri.009G033500' => 'ptr', 'Potri.010G089300' => 'ptr', 'Potri.014G110800' => 'ptr', 'Pp3c27_8130' => 'ppa', 'Pp3c6_27410' => 'ppa', 'PRCOL_00001659' => 'pco', 'PRCOL_00001927' => 'pco', 'PRCOL_00003649' => 'pco', 'Prupe.1G011600' => 'ppe', 'Prupe.3G000800' => 'ppe', 'Prupe.3G001100' => 'ppe', 'Prupe.6G072700' => 'ppe', 'Prupe.6G072800' => 'ppe', 'Prupe.6G257300' => 'ppe', 'Prupe.8G033000' => 'ppe', 'Psat0s2633g0080' => 'psa', 'Psat0s3396g0080' => 'psa', 'Psat0s3396g0200' => 'psa', 'Psat3g139080' => 'psa', 'Psat5g285080' => 'psa', 'Psat6g157760' => 'psa', 'Psat6g208440' => 'psa', 'Psat7g215320' => 'psa', 'Psat7g215400' => 'psa', 'Psat7g235600' => 'psa', 'Psat7g235760' => 'psa', 'PSO063G4603' => 'pso', 'PSO210G0182' => 'pso', 'PSO210G0196' => 'pso', 'PSO339G0394' => 'pso', 'PSO339G4127' => 'pso', 'PSO513G0064' => 'pso', 'PSO761G0079' => 'pso', 'QL01p031003' => 'qlo', 'QL01p031078' => 'qlo', 'QL06p003004' => 'qlo', 'QL07p048731' => 'qlo', 'QL09p037427' => 'qlo', 'RcHm_v2.0_Chr3g0466361' => 'rch', 'RcHm_v2.0_Chr3g0485571' => 'rch', 'RcHm_v2.0_Chr4g0416551' => 'rch', 'RcHm_v2.0_Chr5g0065831' => 'rch', 'Rhsim01G0230500' => 'rsi', 'Rhsim05G0194000' => 'rsi', 'Rhsim08G0250400' => 'rsi', 'Sabra02G0131000' => 'sbr', 'Sabra06G0066300' => 'sbr', 'Sabra08G0115500' => 'sbr', 'Sabra09G0023900' => 'sbr', 'Sabra10G0054000' => 'sbr', 'Sabra14G0081500' => 'sbr', 'Sabra16G0147100' => 'sbr', 'SalBow2G2957' => 'sbo', 'SalBow4G3320' => 'sbo', 'SalBow8G1894' => 'sbo', 'Sc07g0007950' => 'sci', 'Sc12g0001360' => 'sci', 'Sc13g0004330' => 'sci', 'Sc20g0005010' => 'sci', 'Sed0000361' => 'sed', 'Sed0001706' => 'sed', 'Sed0002422' => 'sed', 'Sed0004029' => 'sed', 'Sed0004602' => 'sed', 'Sed0004943' => 'sed', 'Sed0008646' => 'sed', 'Sed0023313' => 'sed', 'Sed0024843' => 'sed', 'SEGI_00081' => 'sgi', 'SEGI_00947' => 'sgi', 'SEGI_04046' => 'sgi', 'SEGI_06880' => 'sgi', 'SEGI_09736' => 'sgi', 'SEGI_12741' => 'sgi', 'SEGI_14530' => 'sgi', 'SEGI_20705' => 'sgi', 'SEGI_26088' => 'sgi', 'SEGI_28323' => 'sgi', 'SEGI_33343' => 'sgi', 'SGA_v2.0_scaffold126G33775' => 'sas', 'SGA_v2.0_scaffold2G01337' => 'sas', 'SGA_v2.0_scaffold38G15006' => 'sas', 'SGA_v2.0_scaffold39G15264' => 'sas', 'SGA_v2.0_scaffold453G51880' => 'sas', 'SHI12696' => 'shi', 'SMO367G1096' => 'smo', 'Solyc01g068630.3' => 'sly', 'Solyc05g011880.3' => 'sly', 'Solyc06g076300.3' => 'sly', 'Solyc09g010940.4' => 'sly', 'Solyc09g075890.3' => 'sly', 'Sopen01g030560' => 'spe', 'Sopen05g006630' => 'spe', 'Sopen06g032720' => 'spe', 'Sopen09g005660' => 'spe', 'Sopen09g030690' => 'spe', 'Sp4g14540' => 'spa', 'Sp4g20030' => 'spa', 'Sp5g01320' => 'spa', 'Sp6g21170' => 'spa', 'Sp6g21180' => 'spa', 'Sp6g21190' => 'spa', 'Sp6g40220' => 'spa', 'TAR362G0122' => 'tar', 'TAR362G1338' => 'tar', 'TAR369G0590' => 'tar', 'TAR371G0824' => 'tar', 'TAR622G1429' => 'tar', 'TAR623G0734' => 'tar', 'TAR625G0441' => 'tar', 'TAR629G0976' => 'tar', 'TAR633G1195' => 'tar', 'TAR636G2660' => 'tar', 'THA.LOC104799440' => 'tha', 'THA.LOC104800966' => 'tha', 'THA.LOC104806559' => 'tha', 'THA.LOC104810765' => 'tha', 'THA.LOC104816266' => 'tha', 'THA.LOC104817419' => 'tha', 'THA.LOC104827021' => 'tha', 'Thecc.01G327400' => 'tca', 'Thecc.04G229200' => 'tca', 'Thecc.05G037400' => 'tca', 'Thecc.09G318600' => 'tca', 'Thecc.09G318700' => 'tca', 'Thhalv10006238m.g' => 'esa', 'Thhalv10014321m.g' => 'esa', 'Thhalv10014335m.g' => 'esa', 'Thhalv10015826m.g' => 'esa', 'Thhalv10017107m.g' => 'esa', 'Thhalv10017180m.g' => 'esa', 'Thhalv10029339m.g' => 'esa', 'TPR.G1699' => 'tpr', 'TPR.G23609' => 'tpr', 'TPR.G3081' => 'tpr', 'TPR.G40397' => 'tpr', 'TPR.G5522' => 'tpr', 'TPR.G5618' => 'tpr', 'TPR.G5626' => 'tpr', 'TWI09G1632' => 'twi', 'TWI23G1230' => 'twi', 'TWI53G1064' => 'twi', 'TWI59G0751' => 'twi', 'TWI74G0947' => 'twi', 'TWI77G0337' => 'twi', 'TWI79G1254' => 'twi', 'unitig_0.g2341' => 'ugi', 'unitig_26.g10006' => 'ugi', 'unitig_26.g10008' => 'ugi', 'unitig_26.g9192' => 'ugi', 'vmacro14547' => 'vma', 'vmacro15333' => 'vma', 'vmacro18743' => 'vma', 'vmacro20166' => 'vma', 'VMungo0331G0523' => 'vmu', 'VMungo0331G1202' => 'vmu', 'VMungo0720G1228' => 'vmu', 'VMungo0720G1514' => 'vmu', 'VMungo1080G0169' => 'vmu', 'VMungo1127G1475' => 'vmu', 'VMungo1383G1208' => 'vmu', 'VMungo1383G1698' => 'vmu', 'Zm00001eb012270' => 'zma', 'Zm00001eb054100' => 'zma', 'Zm00001eb063350' => 'zma', 'Zm00001eb328560' => 'zma', 'Zm00001eb342820' => 'zma', 'Zm00001eb362210' => 'zma', 'Zm00001eb397730' => 'zma', 'Zm00001eb399750' => 'zma' ), 'gf_id' => 'HOM05D000959', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000959' ), 'data_identifier' => 'HOM05D000959', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000959', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '622', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p07100' => 'bna', 'A03p11720' => 'bna', 'A05p08300' => 'bna', 'A05p13380' => 'bna', 'A09p54130' => 'bna', 'A10p16690' => 'bna', 'A10p16700' => 'bna', 'A10p33390' => 'bna', 'Aa31LG10G16020' => 'aar', 'Aa31LG1G11810' => 'aar', 'Aa31LG1G11830' => 'aar', 'Aa31LG1G22510' => 'aar', 'Aa31LG5G4890' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5793' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2310' => 'aag', 'Actinidia08499' => 'ach', 'Actinidia11262' => 'ach', 'Actinidia23926' => 'ach', 'Actinidia34420' => 'ach', 'Actinidia36970' => 'ach', 'Ah.02g111220' => 'amhyb', 'Ah.15g097750' => 'amhyb', 'AL4G27500' => 'aly', 'AL6G11470' => 'aly', 'AL8G35950' => 'aly', 'AL8G35960' => 'aly', 'AL8G35970' => 'aly', 'Aqoxy1G00912' => 'aox', 'Aqoxy2G02253' => 'aox', 'Aqoxy2G02411' => 'aox', 'Aqoxy5G00485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BZ66YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K8ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM4FUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6BF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HFV7XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25JBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0YNNV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MAKK6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P70IT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP2Z6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V61LZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YWP64R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3S9AI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7PGHH' => 'arhy', 'AT2G32150' => 'ath', 'AT3G62040' => 'ath', 'AT5G02230' => 'ath', 'AT5G59480' => 'ath', 'AT5G59490' => 'ath', 'ATR0332G060' => 'atr', 'ATR0559G190' => 'atr', 'ATR0693G294' => 'atr', 'Atru.chr3.3975' => 'acertr', 'Atru.chr3.3976' => 'acertr', 'Atru.chr3.3977' => 'acertr', 'Atru.chr4.2498' => 'acertr', 'Atru.chr5.838' => 'acertr', 'Atru.chr8.1990' => 'acertr', 'Atru.chr8.1991' => 'acertr', 'Atru.chr8.1992' => 'acertr', 'AUR62001759' => 'cqu', 'AUR62009545' => 'cqu', 'AUR62010474' => 'cqu', 'AUR62025820' => 'cqu', 'AUR62030422' => 'cqu', 'AUR62033605' => 'cqu', 'AUR62038615' => 'cqu', 'AUR62041347' => 'cqu', 'BcaB01g04574' => 'bca', 'BcaB02g09263' => 'bca', 'BcaB02g10453' => 'bca', 'BcaB05g22513' => 'bca', 'BcaB08g36253' => 'bca', 'BcaB08g36254' => 'bca', 'BcaC01g06519' => 'bca', 'BcaC02g11889' => 'bca', 'BcaC03g14010' => 'bca', 'BcaC03g18439' => 'bca', 'BcaC04g19765' => 'bca', 'BcaC09g48432' => 'bca', 'BcaNung07302' => 'bca', 'BolC2t06040H' => 'bol', 'BolC2t07346H' => 'bol', 'BolC3t13817H' => 'bol', 'BolC4t22625H' => 'bol', 'BolC4t23297H' => 'bol', 'BolC8t51278H' => 'bol', 'BolC9t58050H' => 'bol', 'BolC9t58051H' => 'bol', 'BolC9t60163H' => 'bol', 'BraA02t04712Z' => 'bra', 'BraA02t05791Z' => 'bra', 'BraA03t10483Z' => 'bra', 'BraA05t19795Z' => 'bra', 'BraA05t20276Z' => 'bra', 'BraA09t40827Z' => 'bra', 'BraA10t43750Z' => 'bra', 'BraA10t43751Z' => 'bra', 'BraA10t45370Z' => 'bra', 'C02p00400' => 'bna', 'C02p12460' => 'bna', 'C03p13680' => 'bna', 'C04p10270' => 'bna', 'C04p17500' => 'bna', 'C08p37010' => 'bna', 'C09p51880' => 'bna', 'C09p51890' => 'bna', 'C09p74300' => 'bna', 'CAN.G179.26' => 'can', 'CAN.G3384.1' => 'can', 'CAN.G394.68' => 'can', 'CAN.G907.13' => 'can', 'CANSAT11G0012' => 'cansat', 'CANSAT25G1586' => 'cansat', 'CANSAT35G0735' => 'cansat', 'CANSAT54G0556' => 'cansat', 'CANSAT64G0356' => 'cansat', 'CANSAT78G2042' => 'cansat', 'CARHR125920' => 'chi', 'CARHR131910' => 'chi', 'CARHR172390' => 'chi', 'CARHR211140' => 'chi', 'CARHR285850' => 'chi', 'CARHR285860' => 'chi', 'Carub.0004s1347' => 'cru', 'Carub.0004s1960' => 'cru', 'Carub.0005s2880' => 'cru', 'Carub.0006s0107' => 'cru', 'Carub.0008s2015' => 'cru', 'Carub.0008s2016' => 'cru', 'Carub.0008s2017' => 'cru', 'Ca_01315_v3' => 'car', 'Ca_05063_v3' => 'car', 'Ca_10231_v3' => 'car', 'Ca_10913_v3' => 'car', 'Ca_19156_v3' => 'car', 'Ca_23644_v3' => 'car', 'Ca_26735_v3' => 'car', 'Cc01_g13130' => 'ccan', 'Cc02_g21690' => 'ccan', 'Cc03_g03600' => 'ccan', 'Cc06_g02510' => 'ccan', 'CDE02G1265' => 'cde', 'CDE05G0415' => 'cde', 'CDE08G1082' => 'cde', 'Cfa005780' => 'cfa', 'Cfa011522' => 'cfa', 'Cfa011523' => 'cfa', 'Cfa015627' => 'cfa', 'Cfa017359' => 'cfa', 'Ciclev10005687m.g' => 'ccl', 'Ciclev10012173m.g' => 'ccl', 'Ciclev10021621m.g' => 'ccl', 'Ciclev10028968m.g' => 'ccl', 'Ciclev10029907m.g' => 'ccl', 'CiPaw.01G164800' => 'cil', 'CiPaw.07G083700' => 'cil', 'CiPaw.07G127000' => 'cil', 'CiPaw.07G136900' => 'cil', 'CiPaw.08G081700' => 'cil', 'CiPaw.09G194600' => 'cil', 'CiPaw.10G146500' => 'cil', 'CiPaw.13G091500' => 'cil', 'CiPaw.13G091600' => 'cil', 'ClCG00G003390' => 'cla', 'ClCG01G007220' => 'cla', 'ClCG03G001370' => 'cla', 'ClCG04G008100' => 'cla', 'ClCG06G006110' => 'cla', 'ClCG06G006130' => 'cla', 'ClCG10G021210' => 'cla', 'COL.COLO4_07648' => 'col', 'COL.COLO4_07650' => 'col', 'COL.COLO4_07651' => 'col', 'COL.COLO4_14780' => 'col', 'COL.COLO4_18546' => 'col', 'COL.COLO4_18547' => 'col', 'COL.COLO4_23103' => 'col', 'COL.COLO4_30419' => 'col', 'COL.COLO4_34232' => 'col', 'Cpa.g.sc169.20' => 'cpa', 'Cpa.g.sc57.45' => 'cpa', 'Cpa.g.sc58.124' => 'cpa', 'Cpa.g.sc58.125' => 'cpa', 'Cpa.g.sc81.118' => 'cpa', 'Cpa.g.sc81.119' => 'cpa', 'Cre12.g524700' => 'cre', 'CsaV3_1G034430' => 'csa', 'CsaV3_1G034440' => 'csa', 'CsaV3_1G034450' => 'csa', 'CsaV3_3G034830' => 'csa', 'CsaV3_4G025090' => 'csa', 'CsaV3_5G018660' => 'csa', 'CsaV3_6G038160' => 'csa', 'CSS0003447' => 'camsi', 'CSS0017840' => 'camsi', 'CSS0019260' => 'camsi', 'CSS0040375' => 'camsi', 'CSS0042533' => 'camsi', 'DCAR_005960' => 'dca', 'DCAR_012104' => 'dca', 'DCAR_012105' => 'dca', 'DCAR_012293' => 'dca', 'DCAR_015632' => 'dca', 'DCAR_024602' => 'dca', 'DCAR_028752' => 'dca', 'Dinv06261' => 'din', 'Dinv13982' => 'din', 'Dinv17029' => 'din', 'Dinv18463' => 'din', 'Dinv33181' => 'din', 'Dinv35585' => 'din', 'Dinv37161' => 'din', 'Dinv42977' => 'din', 'Dinv43122' => 'din', 'Dinv44517' => 'din', 'Duzib093G0256' => 'dzi', 'Duzib106G1254' => 'dzi', 'Duzib128G1789' => 'dzi', 'Duzib133G0633' => 'dzi', 'Duzib138G0510' => 'dzi', 'Duzib150G1084' => 'dzi', 'Duzib168G0488' => 'dzi', 'Duzib168G1523' => 'dzi', 'Duzib170G0133' => 'dzi', 'ECA234G1433' => 'eca', 'ECA236G1432' => 'eca', 'ECA236G2256' => 'eca', 'ECA236G2365' => 'eca', 'ECA236G4830' => 'eca', 'ECA248G1505' => 'eca', 'EL10Ac3g06431' => 'bvu', 'EL10Ac5g12577' => 'bvu', 'EL10Ac6g13533' => 'bvu', 'EL10Ac7g16045' => 'bvu', 'Eucgr.A01281' => 'egr', 'Eucgr.B02326' => 'egr', 'Eucgr.H03532' => 'egr', 'Eucgr.K00553' => 'egr', 'Eucgr.K03116' => 'egr', 'FAN02G3963' => 'fan', 'FAN05G0438' => 'fan', 'FAN09G2434' => 'fan', 'FAN12G3984' => 'fan', 'FAN14G0798' => 'fan', 'FAN17G0652' => 'fan', 'FAN19G1988' => 'fan', 'FAN22G0632' => 'fan', 'FAN23G0387' => 'fan', 'FAN26G1323' => 'fan', 'FAN28G0666' => 'fan', 'FvH4_1g26080' => 'fve', 'FvH4_3g36780' => 'fve', 'FvH4_4g15270' => 'fve', 'FvH4_6g13490' => 'fve', 'Glyma.01G098700' => 'gma', 'Glyma.03G065900' => 'gma', 'Glyma.03G073754' => 'gma', 'Glyma.03G073758' => 'gma', 'Glyma.03G083200' => 'gma', 'Glyma.03G225500' => 'gma', 'Glyma.05G037766' => 'gma', 'Glyma.07G133500' => 'gma', 'Glyma.10G139400' => 'gma', 'Glyma.10G248900' => 'gma', 'Glyma.11G137800' => 'gma', 'Glyma.12G061300' => 'gma', 'Glyma.13G337900' => 'gma', 'Glyma.15G036600' => 'gma', 'Glyma.18G182800' => 'gma', 'Glyma.19G222500' => 'gma', 'Glyma.20G144800' => 'gma', 'Gohir.A01G222000' => 'ghi', 'Gohir.A03G044000' => 'ghi', 'Gohir.A03G044100' => 'ghi', 'Gohir.A04G083100' => 'ghi', 'Gohir.A07G127200' => 'ghi', 'Gohir.A07G132400' => 'ghi', 'Gohir.A08G000700' => 'ghi', 'Gohir.A11G327300' => 'ghi', 'Gohir.D01G211500' => 'ghi', 'Gohir.D03G123400' => 'ghi', 'Gohir.D03G123500' => 'ghi', 'Gohir.D04G121800' => 'ghi', 'Gohir.D07G131500' => 'ghi', 'Gohir.D07G136600' => 'ghi', 'Gohir.D08G011600' => 'ghi', 'Gohir.D11G346200' => 'ghi', 'Gorai.001G142800' => 'gra', 'Gorai.001G148700' => 'gra', 'Gorai.002G257300' => 'gra', 'Gorai.003G130000' => 'gra', 'Gorai.003G130100' => 'gra', 'Gorai.004G005300' => 'gra', 'Gorai.007G376500' => 'gra', 'Gorai.012G104700' => 'gra', 'GSVIVG01017946001' => 'vvi', 'GSVIVG01024928001' => 'vvi', 'GSVIVG01028227001' => 'vvi', 'GSVIVG01034151001' => 'vvi', 'HanXRQChr05g0135031' => 'han', 'HanXRQChr05g0135041' => 'han', 'HanXRQChr05g0140021' => 'han', 'HanXRQChr06g0178981' => 'han', 'HanXRQChr07g0188251' => 'han', 'HanXRQChr08g0235311' => 'han', 'HanXRQChr09g0271011' => 'han', 'HanXRQChr10g0293321' => 'han', 'HanXRQChr13g0388171' => 'han', 'Haze_00916' => 'cav', 'Haze_05063' => 'cav', 'Haze_20814' => 'cav', 'Haze_24128' => 'cav', 'Hma1.2p1_0745F.1_g212010' => 'hma', 'Hma1.2p1_0757F.1_g213260' => 'hma', 'Hma1.2p1_0936F.1_g238840' => 'hma', 'Hma1.2p1_1735F.1_g299890' => 'hma', 'Hma1.2p1_1861F.1_g305685' => 'hma', 'HPP92_003397' => 'vpl', 'HPP92_012597' => 'vpl', 'HPP92_015520' => 'vpl', 'HPP92_015539' => 'vpl', 'HPP92_020373' => 'vpl', 'Hund04938' => 'sun', 'Hund10677' => 'sun', 'Hund11033' => 'sun', 'Hund12155' => 'sun', 'Lalb_Chr01g0022551' => 'lal', 'Lalb_Chr03g0042341' => 'lal', 'Lalb_Chr07g0192931' => 'lal', 'Lalb_Chr12g0209551' => 'lal', 'Lalb_Chr19g0125251' => 'lal', 'Lalb_Chr19g0137891' => 'lal', 'Lalb_Chr21g0304641' => 'lal', 'Lalb_Chr21g0309881' => 'lal', 'Lj1A5T12' => 'lonja', 'Lj1C148G10' => 'lonja', 'Lj2A93T83' => 'lonja', 'Lj3A738G68' => 'lonja', 'Lj3C966T1' => 'lonja', 'Lj3g0018958' => 'lja', 'Lj3g0021831' => 'lja', 'Lj3g0025443' => 'lja', 'Lj4g0026809' => 'lja', 'Lj5g0012558' => 'lja', 'Lj5g0021586' => 'lja', 'Lsat_1_v5_gn_5_156840' => 'lsa', 'Lsat_1_v5_gn_8_73460' => 'lsa', 'Lsat_1_v5_gn_8_73481' => 'lsa', 'Lsat_1_v5_gn_9_31601' => 'lsa', 'Lsat_1_v5_gn_9_77320' => 'lsa', 'Manes.01G171300' => 'mes', 'Manes.01G171400' => 'mes', 'Manes.01G236100' => 'mes', 'Manes.02G130500' => 'mes', 'Manes.02G130600' => 'mes', 'Manes.03G180200' => 'mes', 'Manes.05G007000' => 'mes', 'Manes.08G084400' => 'mes', 'Manes.09G092600' => 'mes', 'Manes.15G027900' => 'mes', 'MBI04_g40948_MAGBIO' => 'mbi', 'MBI14_g12123_MAGBIO' => 'mbi', 'MBI18_g28915_MAGBIO' => 'mbi', 'MCO09G053' => 'mco', 'MCO11G782' => 'mco', 'MCO15G215' => 'mco', 'MD03G1088500' => 'mdo', 'MD03G1088600' => 'mdo', 'MD04G1130800' => 'mdo', 'MD09G1291700' => 'mdo', 'MD11G1097500' => 'mdo', 'MD11G1097600' => 'mdo', 'MD12G1143900' => 'mdo', 'MD13G1191400' => 'mdo', 'MD16G1191500' => 'mdo', 'Medtr1g085570' => 'mtr', 'Medtr1g104610' => 'mtr', 'Medtr2g097520' => 'mtr', 'Medtr4g021800' => 'mtr', 'Medtr4g021825' => 'mtr', 'Medtr4g064270' => 'mtr', 'Medtr4g064380' => 'mtr', 'Medtr7g062150' => 'mtr', 'MELO3C003138.2' => 'cme', 'MELO3C005187.2' => 'cme', 'MELO3C009252.2' => 'cme', 'MELO3C014481.2' => 'cme', 'MELO3C020616.2' => 'cme', 'MELO3C020617.2' => 'cme', 'MELO3C020618.2' => 'cme', 'Migut.G00328' => 'egut', 'Migut.J00320' => 'egut', 'Migut.L01000' => 'egut', 'Migut.L01953' => 'egut', 'MSTRG.10253' => 'ama', 'MSTRG.19077' => 'ama', 'MSTRG.26780' => 'ama', 'MSTRG.4023' => 'ama', 'MSTRG.5655' => 'ama', 'MSTRG.9992' => 'ama', 'Nitab4.5_0000043g0310' => 'nta', 'Nitab4.5_0000463g0080' => 'nta', 'Nitab4.5_0000705g0170' => 'nta', 'Nitab4.5_0001326g0060' => 'nta', 'Nitab4.5_0001628g0030' => 'nta', 'Nitab4.5_0002103g0110' => 'nta', 'Nitab4.5_0002946g0030' => 'nta', 'Nitab4.5_0004639g0030' => 'nta', 'Nn2g11149' => 'nnu', 'Nn2g13389' => 'nnu', 'Nn4g25326' => 'nnu', 'Nn4g26290' => 'nnu', 'Nn5g29865' => 'nnu', 'Oeu004163.1' => 'oeu', 'Oeu006901.1' => 'oeu', 'Oeu010096.1' => 'oeu', 'Oeu024340.1' => 'oeu', 'Oeu048369.1' => 'oeu', 'Os01g0973000' => 'osa', 'Os03g0273800' => 'osa', 'Os03g0701200' => 'osa', 'Os03g0834050' => 'osa', 'Os07g0634400' => 'osa', 'Peaxi162Scf00092g01414' => 'pax', 'Peaxi162Scf00165g00818' => 'pax', 'Peaxi162Scf00309g00516' => 'pax', 'Peaxi162Scf00774g00218' => 'pax', 'PGR004G1824' => 'pgr', 'PGR004G2606' => 'pgr', 'PGR031G2716' => 'pgr', 'PGR102G2460' => 'pgr', 'PGR142G2599' => 'pgr', 'PGSC0003DMG400000843' => 'stu', 'PGSC0003DMG400008829' => 'stu', 'PGSC0003DMG400030418' => 'stu', 'PGSC0003DMG400031834' => 'stu', 'PGSC0003DMG401028300' => 'stu', 'PGSC0003DMG402028300' => 'stu', 'Phvul.001G219300' => 'pvu', 'Phvul.007G056000' => 'pvu', 'Phvul.007G208000' => 'pvu', 'Phvul.008G119500' => 'pvu', 'Phvul.010G011200' => 'pvu', 'Phvul.010G014800' => 'pvu', 'Phvul.011G062900' => 'pvu', 'Phvul.L007043' => 'pvu', 'Potri.001G242300' => 'ptr', 'Potri.002G185300' => 'ptr', 'Potri.006G086900' => 'ptr', 'Potri.008G151700' => 'ptr', 'Potri.009G033500' => 'ptr', 'Potri.010G089300' => 'ptr', 'Potri.014G110800' => 'ptr', 'Pp3c27_8130' => 'ppa', 'Pp3c6_27410' => 'ppa', 'PRCOL_00001659' => 'pco', 'PRCOL_00001927' => 'pco', 'PRCOL_00003649' => 'pco', 'Prupe.1G011600' => 'ppe', 'Prupe.3G000800' => 'ppe', 'Prupe.3G001100' => 'ppe', 'Prupe.6G072700' => 'ppe', 'Prupe.6G072800' => 'ppe', 'Prupe.6G257300' => 'ppe', 'Prupe.8G033000' => 'ppe', 'Psat0s2633g0080' => 'psa', 'Psat0s3396g0080' => 'psa', 'Psat0s3396g0200' => 'psa', 'Psat3g139080' => 'psa', 'Psat5g285080' => 'psa', 'Psat6g157760' => 'psa', 'Psat6g208440' => 'psa', 'Psat7g215320' => 'psa', 'Psat7g215400' => 'psa', 'Psat7g235600' => 'psa', 'Psat7g235760' => 'psa', 'PSO063G4603' => 'pso', 'PSO210G0182' => 'pso', 'PSO210G0196' => 'pso', 'PSO339G0394' => 'pso', 'PSO339G4127' => 'pso', 'PSO513G0064' => 'pso', 'PSO761G0079' => 'pso', 'QL01p031003' => 'qlo', 'QL01p031078' => 'qlo', 'QL06p003004' => 'qlo', 'QL07p048731' => 'qlo', 'QL09p037427' => 'qlo', 'RcHm_v2.0_Chr3g0466361' => 'rch', 'RcHm_v2.0_Chr3g0485571' => 'rch', 'RcHm_v2.0_Chr4g0416551' => 'rch', 'RcHm_v2.0_Chr5g0065831' => 'rch', 'Rhsim01G0230500' => 'rsi', 'Rhsim05G0194000' => 'rsi', 'Rhsim08G0250400' => 'rsi', 'Sabra02G0131000' => 'sbr', 'Sabra06G0066300' => 'sbr', 'Sabra08G0115500' => 'sbr', 'Sabra09G0023900' => 'sbr', 'Sabra10G0054000' => 'sbr', 'Sabra14G0081500' => 'sbr', 'Sabra16G0147100' => 'sbr', 'SalBow2G2957' => 'sbo', 'SalBow4G3320' => 'sbo', 'SalBow8G1894' => 'sbo', 'Sc07g0007950' => 'sci', 'Sc12g0001360' => 'sci', 'Sc13g0004330' => 'sci', 'Sc20g0005010' => 'sci', 'Sed0000361' => 'sed', 'Sed0001706' => 'sed', 'Sed0002422' => 'sed', 'Sed0004029' => 'sed', 'Sed0004602' => 'sed', 'Sed0004943' => 'sed', 'Sed0008646' => 'sed', 'Sed0023313' => 'sed', 'Sed0024843' => 'sed', 'SEGI_00081' => 'sgi', 'SEGI_00947' => 'sgi', 'SEGI_04046' => 'sgi', 'SEGI_06880' => 'sgi', 'SEGI_09736' => 'sgi', 'SEGI_12741' => 'sgi', 'SEGI_14530' => 'sgi', 'SEGI_20705' => 'sgi', 'SEGI_26088' => 'sgi', 'SEGI_28323' => 'sgi', 'SEGI_33343' => 'sgi', 'SGA_v2.0_scaffold126G33775' => 'sas', 'SGA_v2.0_scaffold2G01337' => 'sas', 'SGA_v2.0_scaffold38G15006' => 'sas', 'SGA_v2.0_scaffold39G15264' => 'sas', 'SGA_v2.0_scaffold453G51880' => 'sas', 'SHI12696' => 'shi', 'SMO367G1096' => 'smo', 'Solyc01g068630.3' => 'sly', 'Solyc05g011880.3' => 'sly', 'Solyc06g076300.3' => 'sly', 'Solyc09g010940.4' => 'sly', 'Solyc09g075890.3' => 'sly', 'Sopen01g030560' => 'spe', 'Sopen05g006630' => 'spe', 'Sopen06g032720' => 'spe', 'Sopen09g005660' => 'spe', 'Sopen09g030690' => 'spe', 'Sp4g14540' => 'spa', 'Sp4g20030' => 'spa', 'Sp5g01320' => 'spa', 'Sp6g21170' => 'spa', 'Sp6g21180' => 'spa', 'Sp6g21190' => 'spa', 'Sp6g40220' => 'spa', 'TAR362G0122' => 'tar', 'TAR362G1338' => 'tar', 'TAR369G0590' => 'tar', 'TAR371G0824' => 'tar', 'TAR622G1429' => 'tar', 'TAR623G0734' => 'tar', 'TAR625G0441' => 'tar', 'TAR629G0976' => 'tar', 'TAR633G1195' => 'tar', 'TAR636G2660' => 'tar', 'THA.LOC104799440' => 'tha', 'THA.LOC104800966' => 'tha', 'THA.LOC104806559' => 'tha', 'THA.LOC104810765' => 'tha', 'THA.LOC104816266' => 'tha', 'THA.LOC104817419' => 'tha', 'THA.LOC104827021' => 'tha', 'Thecc.01G327400' => 'tca', 'Thecc.04G229200' => 'tca', 'Thecc.05G037400' => 'tca', 'Thecc.09G318600' => 'tca', 'Thecc.09G318700' => 'tca', 'Thhalv10006238m.g' => 'esa', 'Thhalv10014321m.g' => 'esa', 'Thhalv10014335m.g' => 'esa', 'Thhalv10015826m.g' => 'esa', 'Thhalv10017107m.g' => 'esa', 'Thhalv10017180m.g' => 'esa', 'Thhalv10029339m.g' => 'esa', 'TPR.G1699' => 'tpr', 'TPR.G23609' => 'tpr', 'TPR.G3081' => 'tpr', 'TPR.G40397' => 'tpr', 'TPR.G5522' => 'tpr', 'TPR.G5618' => 'tpr', 'TPR.G5626' => 'tpr', 'TWI09G1632' => 'twi', 'TWI23G1230' => 'twi', 'TWI53G1064' => 'twi', 'TWI59G0751' => 'twi', 'TWI74G0947' => 'twi', 'TWI77G0337' => 'twi', 'TWI79G1254' => 'twi', 'unitig_0.g2341' => 'ugi', 'unitig_26.g10006' => 'ugi', 'unitig_26.g10008' => 'ugi', 'unitig_26.g9192' => 'ugi', 'vmacro14547' => 'vma', 'vmacro15333' => 'vma', 'vmacro18743' => 'vma', 'vmacro20166' => 'vma', 'VMungo0331G0523' => 'vmu', 'VMungo0331G1202' => 'vmu', 'VMungo0720G1228' => 'vmu', 'VMungo0720G1514' => 'vmu', 'VMungo1080G0169' => 'vmu', 'VMungo1127G1475' => 'vmu', 'VMungo1383G1208' => 'vmu', 'VMungo1383G1698' => 'vmu', 'Zm00001eb012270' => 'zma', 'Zm00001eb054100' => 'zma', 'Zm00001eb063350' => 'zma', 'Zm00001eb328560' => 'zma', 'Zm00001eb342820' => 'zma', 'Zm00001eb362210' => 'zma', 'Zm00001eb397730' => 'zma', 'Zm00001eb399750' => 'zma' ) $gf_id = 'HOM05D000959' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000959' ) $data_identifier = 'HOM05D000959' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 5, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 5, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 10, 'mbi' => (int) 3, 'mco' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 2, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 3, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 11, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399750' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000959', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '622', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p07100' => 'bna', 'A03p11720' => 'bna', 'A05p08300' => 'bna', 'A05p13380' => 'bna', 'A09p54130' => 'bna', 'A10p16690' => 'bna', 'A10p16700' => 'bna', 'A10p33390' => 'bna', 'Aa31LG10G16020' => 'aar', 'Aa31LG1G11810' => 'aar', 'Aa31LG1G11830' => 'aar', 'Aa31LG1G22510' => 'aar', 'Aa31LG5G4890' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5793' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2310' => 'aag', 'Actinidia08499' => 'ach', 'Actinidia11262' => 'ach', 'Actinidia23926' => 'ach', 'Actinidia34420' => 'ach', 'Actinidia36970' => 'ach', 'Ah.02g111220' => 'amhyb', 'Ah.15g097750' => 'amhyb', 'AL4G27500' => 'aly', 'AL6G11470' => 'aly', 'AL8G35950' => 'aly', 'AL8G35960' => 'aly', 'AL8G35970' => 'aly', 'Aqoxy1G00912' => 'aox', 'Aqoxy2G02253' => 'aox', 'Aqoxy2G02411' => 'aox', 'Aqoxy5G00485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BZ66YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K8ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM4FUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6BF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HFV7XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25JBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0YNNV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MAKK6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P70IT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP2Z6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V61LZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YWP64R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3S9AI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7PGHH' => 'arhy', 'AT2G32150' => 'ath', 'AT3G62040' => 'ath', 'AT5G02230' => 'ath', 'AT5G59480' => 'ath', 'AT5G59490' => 'ath', 'ATR0332G060' => 'atr', 'ATR0559G190' => 'atr', 'ATR0693G294' => 'atr', 'Atru.chr3.3975' => 'acertr', 'Atru.chr3.3976' => 'acertr', 'Atru.chr3.3977' => 'acertr', 'Atru.chr4.2498' => 'acertr', 'Atru.chr5.838' => 'acertr', 'Atru.chr8.1990' => 'acertr', 'Atru.chr8.1991' => 'acertr', 'Atru.chr8.1992' => 'acertr', 'AUR62001759' => 'cqu', 'AUR62009545' => 'cqu', 'AUR62010474' => 'cqu', 'AUR62025820' => 'cqu', 'AUR62030422' => 'cqu', 'AUR62033605' => 'cqu', 'AUR62038615' => 'cqu', 'AUR62041347' => 'cqu', 'BcaB01g04574' => 'bca', 'BcaB02g09263' => 'bca', 'BcaB02g10453' => 'bca', 'BcaB05g22513' => 'bca', 'BcaB08g36253' => 'bca', 'BcaB08g36254' => 'bca', 'BcaC01g06519' => 'bca', 'BcaC02g11889' => 'bca', 'BcaC03g14010' => 'bca', 'BcaC03g18439' => 'bca', 'BcaC04g19765' => 'bca', 'BcaC09g48432' => 'bca', 'BcaNung07302' => 'bca', 'BolC2t06040H' => 'bol', 'BolC2t07346H' => 'bol', 'BolC3t13817H' => 'bol', 'BolC4t22625H' => 'bol', 'BolC4t23297H' => 'bol', 'BolC8t51278H' => 'bol', 'BolC9t58050H' => 'bol', 'BolC9t58051H' => 'bol', 'BolC9t60163H' => 'bol', 'BraA02t04712Z' => 'bra', 'BraA02t05791Z' => 'bra', 'BraA03t10483Z' => 'bra', 'BraA05t19795Z' => 'bra', 'BraA05t20276Z' => 'bra', 'BraA09t40827Z' => 'bra', 'BraA10t43750Z' => 'bra', 'BraA10t43751Z' => 'bra', 'BraA10t45370Z' => 'bra', 'C02p00400' => 'bna', 'C02p12460' => 'bna', 'C03p13680' => 'bna', 'C04p10270' => 'bna', 'C04p17500' => 'bna', 'C08p37010' => 'bna', 'C09p51880' => 'bna', 'C09p51890' => 'bna', 'C09p74300' => 'bna', 'CAN.G179.26' => 'can', 'CAN.G3384.1' => 'can', 'CAN.G394.68' => 'can', 'CAN.G907.13' => 'can', 'CANSAT11G0012' => 'cansat', 'CANSAT25G1586' => 'cansat', 'CANSAT35G0735' => 'cansat', 'CANSAT54G0556' => 'cansat', 'CANSAT64G0356' => 'cansat', 'CANSAT78G2042' => 'cansat', 'CARHR125920' => 'chi', 'CARHR131910' => 'chi', 'CARHR172390' => 'chi', 'CARHR211140' => 'chi', 'CARHR285850' => 'chi', 'CARHR285860' => 'chi', 'Carub.0004s1347' => 'cru', 'Carub.0004s1960' => 'cru', 'Carub.0005s2880' => 'cru', 'Carub.0006s0107' => 'cru', 'Carub.0008s2015' => 'cru', 'Carub.0008s2016' => 'cru', 'Carub.0008s2017' => 'cru', 'Ca_01315_v3' => 'car', 'Ca_05063_v3' => 'car', 'Ca_10231_v3' => 'car', 'Ca_10913_v3' => 'car', 'Ca_19156_v3' => 'car', 'Ca_23644_v3' => 'car', 'Ca_26735_v3' => 'car', 'Cc01_g13130' => 'ccan', 'Cc02_g21690' => 'ccan', 'Cc03_g03600' => 'ccan', 'Cc06_g02510' => 'ccan', 'CDE02G1265' => 'cde', 'CDE05G0415' => 'cde', 'CDE08G1082' => 'cde', 'Cfa005780' => 'cfa', 'Cfa011522' => 'cfa', 'Cfa011523' => 'cfa', 'Cfa015627' => 'cfa', 'Cfa017359' => 'cfa', 'Ciclev10005687m.g' => 'ccl', 'Ciclev10012173m.g' => 'ccl', 'Ciclev10021621m.g' => 'ccl', 'Ciclev10028968m.g' => 'ccl', 'Ciclev10029907m.g' => 'ccl', 'CiPaw.01G164800' => 'cil', 'CiPaw.07G083700' => 'cil', 'CiPaw.07G127000' => 'cil', 'CiPaw.07G136900' => 'cil', 'CiPaw.08G081700' => 'cil', 'CiPaw.09G194600' => 'cil', 'CiPaw.10G146500' => 'cil', 'CiPaw.13G091500' => 'cil', 'CiPaw.13G091600' => 'cil', 'ClCG00G003390' => 'cla', 'ClCG01G007220' => 'cla', 'ClCG03G001370' => 'cla', 'ClCG04G008100' => 'cla', 'ClCG06G006110' => 'cla', 'ClCG06G006130' => 'cla', 'ClCG10G021210' => 'cla', 'COL.COLO4_07648' => 'col', 'COL.COLO4_07650' => 'col', 'COL.COLO4_07651' => 'col', 'COL.COLO4_14780' => 'col', 'COL.COLO4_18546' => 'col', 'COL.COLO4_18547' => 'col', 'COL.COLO4_23103' => 'col', 'COL.COLO4_30419' => 'col', 'COL.COLO4_34232' => 'col', 'Cpa.g.sc169.20' => 'cpa', 'Cpa.g.sc57.45' => 'cpa', 'Cpa.g.sc58.124' => 'cpa', 'Cpa.g.sc58.125' => 'cpa', 'Cpa.g.sc81.118' => 'cpa', 'Cpa.g.sc81.119' => 'cpa', 'Cre12.g524700' => 'cre', 'CsaV3_1G034430' => 'csa', 'CsaV3_1G034440' => 'csa', 'CsaV3_1G034450' => 'csa', 'CsaV3_3G034830' => 'csa', 'CsaV3_4G025090' => 'csa', 'CsaV3_5G018660' => 'csa', 'CsaV3_6G038160' => 'csa', 'CSS0003447' => 'camsi', 'CSS0017840' => 'camsi', 'CSS0019260' => 'camsi', 'CSS0040375' => 'camsi', 'CSS0042533' => 'camsi', 'DCAR_005960' => 'dca', 'DCAR_012104' => 'dca', 'DCAR_012105' => 'dca', 'DCAR_012293' => 'dca', 'DCAR_015632' => 'dca', 'DCAR_024602' => 'dca', 'DCAR_028752' => 'dca', 'Dinv06261' => 'din', 'Dinv13982' => 'din', 'Dinv17029' => 'din', 'Dinv18463' => 'din', 'Dinv33181' => 'din', 'Dinv35585' => 'din', 'Dinv37161' => 'din', 'Dinv42977' => 'din', 'Dinv43122' => 'din', 'Dinv44517' => 'din', 'Duzib093G0256' => 'dzi', 'Duzib106G1254' => 'dzi', 'Duzib128G1789' => 'dzi', 'Duzib133G0633' => 'dzi', 'Duzib138G0510' => 'dzi', 'Duzib150G1084' => 'dzi', 'Duzib168G0488' => 'dzi', 'Duzib168G1523' => 'dzi', 'Duzib170G0133' => 'dzi', 'ECA234G1433' => 'eca', 'ECA236G1432' => 'eca', 'ECA236G2256' => 'eca', 'ECA236G2365' => 'eca', 'ECA236G4830' => 'eca', 'ECA248G1505' => 'eca', 'EL10Ac3g06431' => 'bvu', 'EL10Ac5g12577' => 'bvu', 'EL10Ac6g13533' => 'bvu', 'EL10Ac7g16045' => 'bvu', 'Eucgr.A01281' => 'egr', 'Eucgr.B02326' => 'egr', 'Eucgr.H03532' => 'egr', 'Eucgr.K00553' => 'egr', 'Eucgr.K03116' => 'egr', 'FAN02G3963' => 'fan', 'FAN05G0438' => 'fan', 'FAN09G2434' => 'fan', 'FAN12G3984' => 'fan', 'FAN14G0798' => 'fan', 'FAN17G0652' => 'fan', 'FAN19G1988' => 'fan', 'FAN22G0632' => 'fan', 'FAN23G0387' => 'fan', 'FAN26G1323' => 'fan', 'FAN28G0666' => 'fan', 'FvH4_1g26080' => 'fve', 'FvH4_3g36780' => 'fve', 'FvH4_4g15270' => 'fve', 'FvH4_6g13490' => 'fve', 'Glyma.01G098700' => 'gma', 'Glyma.03G065900' => 'gma', 'Glyma.03G073754' => 'gma', 'Glyma.03G073758' => 'gma', 'Glyma.03G083200' => 'gma', 'Glyma.03G225500' => 'gma', 'Glyma.05G037766' => 'gma', 'Glyma.07G133500' => 'gma', 'Glyma.10G139400' => 'gma', 'Glyma.10G248900' => 'gma', 'Glyma.11G137800' => 'gma', 'Glyma.12G061300' => 'gma', 'Glyma.13G337900' => 'gma', 'Glyma.15G036600' => 'gma', 'Glyma.18G182800' => 'gma', 'Glyma.19G222500' => 'gma', 'Glyma.20G144800' => 'gma', 'Gohir.A01G222000' => 'ghi', 'Gohir.A03G044000' => 'ghi', 'Gohir.A03G044100' => 'ghi', 'Gohir.A04G083100' => 'ghi', 'Gohir.A07G127200' => 'ghi', 'Gohir.A07G132400' => 'ghi', 'Gohir.A08G000700' => 'ghi', 'Gohir.A11G327300' => 'ghi', 'Gohir.D01G211500' => 'ghi', 'Gohir.D03G123400' => 'ghi', 'Gohir.D03G123500' => 'ghi', 'Gohir.D04G121800' => 'ghi', 'Gohir.D07G131500' => 'ghi', 'Gohir.D07G136600' => 'ghi', 'Gohir.D08G011600' => 'ghi', 'Gohir.D11G346200' => 'ghi', 'Gorai.001G142800' => 'gra', 'Gorai.001G148700' => 'gra', 'Gorai.002G257300' => 'gra', 'Gorai.003G130000' => 'gra', 'Gorai.003G130100' => 'gra', 'Gorai.004G005300' => 'gra', 'Gorai.007G376500' => 'gra', 'Gorai.012G104700' => 'gra', 'GSVIVG01017946001' => 'vvi', 'GSVIVG01024928001' => 'vvi', 'GSVIVG01028227001' => 'vvi', 'GSVIVG01034151001' => 'vvi', 'HanXRQChr05g0135031' => 'han', 'HanXRQChr05g0135041' => 'han', 'HanXRQChr05g0140021' => 'han', 'HanXRQChr06g0178981' => 'han', 'HanXRQChr07g0188251' => 'han', 'HanXRQChr08g0235311' => 'han', 'HanXRQChr09g0271011' => 'han', 'HanXRQChr10g0293321' => 'han', 'HanXRQChr13g0388171' => 'han', 'Haze_00916' => 'cav', 'Haze_05063' => 'cav', 'Haze_20814' => 'cav', 'Haze_24128' => 'cav', 'Hma1.2p1_0745F.1_g212010' => 'hma', 'Hma1.2p1_0757F.1_g213260' => 'hma', 'Hma1.2p1_0936F.1_g238840' => 'hma', 'Hma1.2p1_1735F.1_g299890' => 'hma', 'Hma1.2p1_1861F.1_g305685' => 'hma', 'HPP92_003397' => 'vpl', 'HPP92_012597' => 'vpl', 'HPP92_015520' => 'vpl', 'HPP92_015539' => 'vpl', 'HPP92_020373' => 'vpl', 'Hund04938' => 'sun', 'Hund10677' => 'sun', 'Hund11033' => 'sun', 'Hund12155' => 'sun', 'Lalb_Chr01g0022551' => 'lal', 'Lalb_Chr03g0042341' => 'lal', 'Lalb_Chr07g0192931' => 'lal', 'Lalb_Chr12g0209551' => 'lal', 'Lalb_Chr19g0125251' => 'lal', 'Lalb_Chr19g0137891' => 'lal', 'Lalb_Chr21g0304641' => 'lal', 'Lalb_Chr21g0309881' => 'lal', 'Lj1A5T12' => 'lonja', 'Lj1C148G10' => 'lonja', 'Lj2A93T83' => 'lonja', 'Lj3A738G68' => 'lonja', 'Lj3C966T1' => 'lonja', 'Lj3g0018958' => 'lja', 'Lj3g0021831' => 'lja', 'Lj3g0025443' => 'lja', 'Lj4g0026809' => 'lja', 'Lj5g0012558' => 'lja', 'Lj5g0021586' => 'lja', 'Lsat_1_v5_gn_5_156840' => 'lsa', 'Lsat_1_v5_gn_8_73460' => 'lsa', 'Lsat_1_v5_gn_8_73481' => 'lsa', 'Lsat_1_v5_gn_9_31601' => 'lsa', 'Lsat_1_v5_gn_9_77320' => 'lsa', 'Manes.01G171300' => 'mes', 'Manes.01G171400' => 'mes', 'Manes.01G236100' => 'mes', 'Manes.02G130500' => 'mes', 'Manes.02G130600' => 'mes', 'Manes.03G180200' => 'mes', 'Manes.05G007000' => 'mes', 'Manes.08G084400' => 'mes', 'Manes.09G092600' => 'mes', 'Manes.15G027900' => 'mes', 'MBI04_g40948_MAGBIO' => 'mbi', 'MBI14_g12123_MAGBIO' => 'mbi', 'MBI18_g28915_MAGBIO' => 'mbi', 'MCO09G053' => 'mco', 'MCO11G782' => 'mco', 'MCO15G215' => 'mco', 'MD03G1088500' => 'mdo', 'MD03G1088600' => 'mdo', 'MD04G1130800' => 'mdo', 'MD09G1291700' => 'mdo', 'MD11G1097500' => 'mdo', 'MD11G1097600' => 'mdo', 'MD12G1143900' => 'mdo', 'MD13G1191400' => 'mdo', 'MD16G1191500' => 'mdo', 'Medtr1g085570' => 'mtr', 'Medtr1g104610' => 'mtr', 'Medtr2g097520' => 'mtr', 'Medtr4g021800' => 'mtr', 'Medtr4g021825' => 'mtr', 'Medtr4g064270' => 'mtr', 'Medtr4g064380' => 'mtr', 'Medtr7g062150' => 'mtr', 'MELO3C003138.2' => 'cme', 'MELO3C005187.2' => 'cme', 'MELO3C009252.2' => 'cme', 'MELO3C014481.2' => 'cme', 'MELO3C020616.2' => 'cme', 'MELO3C020617.2' => 'cme', 'MELO3C020618.2' => 'cme', 'Migut.G00328' => 'egut', 'Migut.J00320' => 'egut', 'Migut.L01000' => 'egut', 'Migut.L01953' => 'egut', 'MSTRG.10253' => 'ama', 'MSTRG.19077' => 'ama', 'MSTRG.26780' => 'ama', 'MSTRG.4023' => 'ama', 'MSTRG.5655' => 'ama', 'MSTRG.9992' => 'ama', 'Nitab4.5_0000043g0310' => 'nta', 'Nitab4.5_0000463g0080' => 'nta', 'Nitab4.5_0000705g0170' => 'nta', 'Nitab4.5_0001326g0060' => 'nta', 'Nitab4.5_0001628g0030' => 'nta', 'Nitab4.5_0002103g0110' => 'nta', 'Nitab4.5_0002946g0030' => 'nta', 'Nitab4.5_0004639g0030' => 'nta', 'Nn2g11149' => 'nnu', 'Nn2g13389' => 'nnu', 'Nn4g25326' => 'nnu', 'Nn4g26290' => 'nnu', 'Nn5g29865' => 'nnu', 'Oeu004163.1' => 'oeu', 'Oeu006901.1' => 'oeu', 'Oeu010096.1' => 'oeu', 'Oeu024340.1' => 'oeu', 'Oeu048369.1' => 'oeu', 'Os01g0973000' => 'osa', 'Os03g0273800' => 'osa', 'Os03g0701200' => 'osa', 'Os03g0834050' => 'osa', 'Os07g0634400' => 'osa', 'Peaxi162Scf00092g01414' => 'pax', 'Peaxi162Scf00165g00818' => 'pax', 'Peaxi162Scf00309g00516' => 'pax', 'Peaxi162Scf00774g00218' => 'pax', 'PGR004G1824' => 'pgr', 'PGR004G2606' => 'pgr', 'PGR031G2716' => 'pgr', 'PGR102G2460' => 'pgr', 'PGR142G2599' => 'pgr', 'PGSC0003DMG400000843' => 'stu', 'PGSC0003DMG400008829' => 'stu', 'PGSC0003DMG400030418' => 'stu', 'PGSC0003DMG400031834' => 'stu', 'PGSC0003DMG401028300' => 'stu', 'PGSC0003DMG402028300' => 'stu', 'Phvul.001G219300' => 'pvu', 'Phvul.007G056000' => 'pvu', 'Phvul.007G208000' => 'pvu', 'Phvul.008G119500' => 'pvu', 'Phvul.010G011200' => 'pvu', 'Phvul.010G014800' => 'pvu', 'Phvul.011G062900' => 'pvu', 'Phvul.L007043' => 'pvu', 'Potri.001G242300' => 'ptr', 'Potri.002G185300' => 'ptr', 'Potri.006G086900' => 'ptr', 'Potri.008G151700' => 'ptr', 'Potri.009G033500' => 'ptr', 'Potri.010G089300' => 'ptr', 'Potri.014G110800' => 'ptr', 'Pp3c27_8130' => 'ppa', 'Pp3c6_27410' => 'ppa', 'PRCOL_00001659' => 'pco', 'PRCOL_00001927' => 'pco', 'PRCOL_00003649' => 'pco', 'Prupe.1G011600' => 'ppe', 'Prupe.3G000800' => 'ppe', 'Prupe.3G001100' => 'ppe', 'Prupe.6G072700' => 'ppe', 'Prupe.6G072800' => 'ppe', 'Prupe.6G257300' => 'ppe', 'Prupe.8G033000' => 'ppe', 'Psat0s2633g0080' => 'psa', 'Psat0s3396g0080' => 'psa', 'Psat0s3396g0200' => 'psa', 'Psat3g139080' => 'psa', 'Psat5g285080' => 'psa', 'Psat6g157760' => 'psa', 'Psat6g208440' => 'psa', 'Psat7g215320' => 'psa', 'Psat7g215400' => 'psa', 'Psat7g235600' => 'psa', 'Psat7g235760' => 'psa', 'PSO063G4603' => 'pso', 'PSO210G0182' => 'pso', 'PSO210G0196' => 'pso', 'PSO339G0394' => 'pso', 'PSO339G4127' => 'pso', 'PSO513G0064' => 'pso', 'PSO761G0079' => 'pso', 'QL01p031003' => 'qlo', 'QL01p031078' => 'qlo', 'QL06p003004' => 'qlo', 'QL07p048731' => 'qlo', 'QL09p037427' => 'qlo', 'RcHm_v2.0_Chr3g0466361' => 'rch', 'RcHm_v2.0_Chr3g0485571' => 'rch', 'RcHm_v2.0_Chr4g0416551' => 'rch', 'RcHm_v2.0_Chr5g0065831' => 'rch', 'Rhsim01G0230500' => 'rsi', 'Rhsim05G0194000' => 'rsi', 'Rhsim08G0250400' => 'rsi', 'Sabra02G0131000' => 'sbr', 'Sabra06G0066300' => 'sbr', 'Sabra08G0115500' => 'sbr', 'Sabra09G0023900' => 'sbr', 'Sabra10G0054000' => 'sbr', 'Sabra14G0081500' => 'sbr', 'Sabra16G0147100' => 'sbr', 'SalBow2G2957' => 'sbo', 'SalBow4G3320' => 'sbo', 'SalBow8G1894' => 'sbo', 'Sc07g0007950' => 'sci', 'Sc12g0001360' => 'sci', 'Sc13g0004330' => 'sci', 'Sc20g0005010' => 'sci', 'Sed0000361' => 'sed', 'Sed0001706' => 'sed', 'Sed0002422' => 'sed', 'Sed0004029' => 'sed', 'Sed0004602' => 'sed', 'Sed0004943' => 'sed', 'Sed0008646' => 'sed', 'Sed0023313' => 'sed', 'Sed0024843' => 'sed', 'SEGI_00081' => 'sgi', 'SEGI_00947' => 'sgi', 'SEGI_04046' => 'sgi', 'SEGI_06880' => 'sgi', 'SEGI_09736' => 'sgi', 'SEGI_12741' => 'sgi', 'SEGI_14530' => 'sgi', 'SEGI_20705' => 'sgi', 'SEGI_26088' => 'sgi', 'SEGI_28323' => 'sgi', 'SEGI_33343' => 'sgi', 'SGA_v2.0_scaffold126G33775' => 'sas', 'SGA_v2.0_scaffold2G01337' => 'sas', 'SGA_v2.0_scaffold38G15006' => 'sas', 'SGA_v2.0_scaffold39G15264' => 'sas', 'SGA_v2.0_scaffold453G51880' => 'sas', 'SHI12696' => 'shi', 'SMO367G1096' => 'smo', 'Solyc01g068630.3' => 'sly', 'Solyc05g011880.3' => 'sly', 'Solyc06g076300.3' => 'sly', 'Solyc09g010940.4' => 'sly', 'Solyc09g075890.3' => 'sly', 'Sopen01g030560' => 'spe', 'Sopen05g006630' => 'spe', 'Sopen06g032720' => 'spe', 'Sopen09g005660' => 'spe', 'Sopen09g030690' => 'spe', 'Sp4g14540' => 'spa', 'Sp4g20030' => 'spa', 'Sp5g01320' => 'spa', 'Sp6g21170' => 'spa', 'Sp6g21180' => 'spa', 'Sp6g21190' => 'spa', 'Sp6g40220' => 'spa', 'TAR362G0122' => 'tar', 'TAR362G1338' => 'tar', 'TAR369G0590' => 'tar', 'TAR371G0824' => 'tar', 'TAR622G1429' => 'tar', 'TAR623G0734' => 'tar', 'TAR625G0441' => 'tar', 'TAR629G0976' => 'tar', 'TAR633G1195' => 'tar', 'TAR636G2660' => 'tar', 'THA.LOC104799440' => 'tha', 'THA.LOC104800966' => 'tha', 'THA.LOC104806559' => 'tha', 'THA.LOC104810765' => 'tha', 'THA.LOC104816266' => 'tha', 'THA.LOC104817419' => 'tha', 'THA.LOC104827021' => 'tha', 'Thecc.01G327400' => 'tca', 'Thecc.04G229200' => 'tca', 'Thecc.05G037400' => 'tca', 'Thecc.09G318600' => 'tca', 'Thecc.09G318700' => 'tca', 'Thhalv10006238m.g' => 'esa', 'Thhalv10014321m.g' => 'esa', 'Thhalv10014335m.g' => 'esa', 'Thhalv10015826m.g' => 'esa', 'Thhalv10017107m.g' => 'esa', 'Thhalv10017180m.g' => 'esa', 'Thhalv10029339m.g' => 'esa', 'TPR.G1699' => 'tpr', 'TPR.G23609' => 'tpr', 'TPR.G3081' => 'tpr', 'TPR.G40397' => 'tpr', 'TPR.G5522' => 'tpr', 'TPR.G5618' => 'tpr', 'TPR.G5626' => 'tpr', 'TWI09G1632' => 'twi', 'TWI23G1230' => 'twi', 'TWI53G1064' => 'twi', 'TWI59G0751' => 'twi', 'TWI74G0947' => 'twi', 'TWI77G0337' => 'twi', 'TWI79G1254' => 'twi', 'unitig_0.g2341' => 'ugi', 'unitig_26.g10006' => 'ugi', 'unitig_26.g10008' => 'ugi', 'unitig_26.g9192' => 'ugi', 'vmacro14547' => 'vma', 'vmacro15333' => 'vma', 'vmacro18743' => 'vma', 'vmacro20166' => 'vma', 'VMungo0331G0523' => 'vmu', 'VMungo0331G1202' => 'vmu', 'VMungo0720G1228' => 'vmu', 'VMungo0720G1514' => 'vmu', 'VMungo1080G0169' => 'vmu', 'VMungo1127G1475' => 'vmu', 'VMungo1383G1208' => 'vmu', 'VMungo1383G1698' => 'vmu', 'Zm00001eb012270' => 'zma', 'Zm00001eb054100' => 'zma', 'Zm00001eb063350' => 'zma', 'Zm00001eb328560' => 'zma', 'Zm00001eb342820' => 'zma', 'Zm00001eb362210' => 'zma', 'Zm00001eb397730' => 'zma', 'Zm00001eb399750' => 'zma' ), 'gf_id' => 'HOM05D000959', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000959' ), 'data_identifier' => 'HOM05D000959', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000959', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '622', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p07100' => 'bna', 'A03p11720' => 'bna', 'A05p08300' => 'bna', 'A05p13380' => 'bna', 'A09p54130' => 'bna', 'A10p16690' => 'bna', 'A10p16700' => 'bna', 'A10p33390' => 'bna', 'Aa31LG10G16020' => 'aar', 'Aa31LG1G11810' => 'aar', 'Aa31LG1G11830' => 'aar', 'Aa31LG1G22510' => 'aar', 'Aa31LG5G4890' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5793' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2310' => 'aag', 'Actinidia08499' => 'ach', 'Actinidia11262' => 'ach', 'Actinidia23926' => 'ach', 'Actinidia34420' => 'ach', 'Actinidia36970' => 'ach', 'Ah.02g111220' => 'amhyb', 'Ah.15g097750' => 'amhyb', 'AL4G27500' => 'aly', 'AL6G11470' => 'aly', 'AL8G35950' => 'aly', 'AL8G35960' => 'aly', 'AL8G35970' => 'aly', 'Aqoxy1G00912' => 'aox', 'Aqoxy2G02253' => 'aox', 'Aqoxy2G02411' => 'aox', 'Aqoxy5G00485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BZ66YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K8ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM4FUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6BF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HFV7XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25JBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0YNNV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MAKK6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P70IT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP2Z6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V61LZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YWP64R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3S9AI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7PGHH' => 'arhy', 'AT2G32150' => 'ath', 'AT3G62040' => 'ath', 'AT5G02230' => 'ath', 'AT5G59480' => 'ath', 'AT5G59490' => 'ath', 'ATR0332G060' => 'atr', 'ATR0559G190' => 'atr', 'ATR0693G294' => 'atr', 'Atru.chr3.3975' => 'acertr', 'Atru.chr3.3976' => 'acertr', 'Atru.chr3.3977' => 'acertr', 'Atru.chr4.2498' => 'acertr', 'Atru.chr5.838' => 'acertr', 'Atru.chr8.1990' => 'acertr', 'Atru.chr8.1991' => 'acertr', 'Atru.chr8.1992' => 'acertr', 'AUR62001759' => 'cqu', 'AUR62009545' => 'cqu', 'AUR62010474' => 'cqu', 'AUR62025820' => 'cqu', 'AUR62030422' => 'cqu', 'AUR62033605' => 'cqu', 'AUR62038615' => 'cqu', 'AUR62041347' => 'cqu', 'BcaB01g04574' => 'bca', 'BcaB02g09263' => 'bca', 'BcaB02g10453' => 'bca', 'BcaB05g22513' => 'bca', 'BcaB08g36253' => 'bca', 'BcaB08g36254' => 'bca', 'BcaC01g06519' => 'bca', 'BcaC02g11889' => 'bca', 'BcaC03g14010' => 'bca', 'BcaC03g18439' => 'bca', 'BcaC04g19765' => 'bca', 'BcaC09g48432' => 'bca', 'BcaNung07302' => 'bca', 'BolC2t06040H' => 'bol', 'BolC2t07346H' => 'bol', 'BolC3t13817H' => 'bol', 'BolC4t22625H' => 'bol', 'BolC4t23297H' => 'bol', 'BolC8t51278H' => 'bol', 'BolC9t58050H' => 'bol', 'BolC9t58051H' => 'bol', 'BolC9t60163H' => 'bol', 'BraA02t04712Z' => 'bra', 'BraA02t05791Z' => 'bra', 'BraA03t10483Z' => 'bra', 'BraA05t19795Z' => 'bra', 'BraA05t20276Z' => 'bra', 'BraA09t40827Z' => 'bra', 'BraA10t43750Z' => 'bra', 'BraA10t43751Z' => 'bra', 'BraA10t45370Z' => 'bra', 'C02p00400' => 'bna', 'C02p12460' => 'bna', 'C03p13680' => 'bna', 'C04p10270' => 'bna', 'C04p17500' => 'bna', 'C08p37010' => 'bna', 'C09p51880' => 'bna', 'C09p51890' => 'bna', 'C09p74300' => 'bna', 'CAN.G179.26' => 'can', 'CAN.G3384.1' => 'can', 'CAN.G394.68' => 'can', 'CAN.G907.13' => 'can', 'CANSAT11G0012' => 'cansat', 'CANSAT25G1586' => 'cansat', 'CANSAT35G0735' => 'cansat', 'CANSAT54G0556' => 'cansat', 'CANSAT64G0356' => 'cansat', 'CANSAT78G2042' => 'cansat', 'CARHR125920' => 'chi', 'CARHR131910' => 'chi', 'CARHR172390' => 'chi', 'CARHR211140' => 'chi', 'CARHR285850' => 'chi', 'CARHR285860' => 'chi', 'Carub.0004s1347' => 'cru', 'Carub.0004s1960' => 'cru', 'Carub.0005s2880' => 'cru', 'Carub.0006s0107' => 'cru', 'Carub.0008s2015' => 'cru', 'Carub.0008s2016' => 'cru', 'Carub.0008s2017' => 'cru', 'Ca_01315_v3' => 'car', 'Ca_05063_v3' => 'car', 'Ca_10231_v3' => 'car', 'Ca_10913_v3' => 'car', 'Ca_19156_v3' => 'car', 'Ca_23644_v3' => 'car', 'Ca_26735_v3' => 'car', 'Cc01_g13130' => 'ccan', 'Cc02_g21690' => 'ccan', 'Cc03_g03600' => 'ccan', 'Cc06_g02510' => 'ccan', 'CDE02G1265' => 'cde', 'CDE05G0415' => 'cde', 'CDE08G1082' => 'cde', 'Cfa005780' => 'cfa', 'Cfa011522' => 'cfa', 'Cfa011523' => 'cfa', 'Cfa015627' => 'cfa', 'Cfa017359' => 'cfa', 'Ciclev10005687m.g' => 'ccl', 'Ciclev10012173m.g' => 'ccl', 'Ciclev10021621m.g' => 'ccl', 'Ciclev10028968m.g' => 'ccl', 'Ciclev10029907m.g' => 'ccl', 'CiPaw.01G164800' => 'cil', 'CiPaw.07G083700' => 'cil', 'CiPaw.07G127000' => 'cil', 'CiPaw.07G136900' => 'cil', 'CiPaw.08G081700' => 'cil', 'CiPaw.09G194600' => 'cil', 'CiPaw.10G146500' => 'cil', 'CiPaw.13G091500' => 'cil', 'CiPaw.13G091600' => 'cil', 'ClCG00G003390' => 'cla', 'ClCG01G007220' => 'cla', 'ClCG03G001370' => 'cla', 'ClCG04G008100' => 'cla', 'ClCG06G006110' => 'cla', 'ClCG06G006130' => 'cla', 'ClCG10G021210' => 'cla', 'COL.COLO4_07648' => 'col', 'COL.COLO4_07650' => 'col', 'COL.COLO4_07651' => 'col', 'COL.COLO4_14780' => 'col', 'COL.COLO4_18546' => 'col', 'COL.COLO4_18547' => 'col', 'COL.COLO4_23103' => 'col', 'COL.COLO4_30419' => 'col', 'COL.COLO4_34232' => 'col', 'Cpa.g.sc169.20' => 'cpa', 'Cpa.g.sc57.45' => 'cpa', 'Cpa.g.sc58.124' => 'cpa', 'Cpa.g.sc58.125' => 'cpa', 'Cpa.g.sc81.118' => 'cpa', 'Cpa.g.sc81.119' => 'cpa', 'Cre12.g524700' => 'cre', 'CsaV3_1G034430' => 'csa', 'CsaV3_1G034440' => 'csa', 'CsaV3_1G034450' => 'csa', 'CsaV3_3G034830' => 'csa', 'CsaV3_4G025090' => 'csa', 'CsaV3_5G018660' => 'csa', 'CsaV3_6G038160' => 'csa', 'CSS0003447' => 'camsi', 'CSS0017840' => 'camsi', 'CSS0019260' => 'camsi', 'CSS0040375' => 'camsi', 'CSS0042533' => 'camsi', 'DCAR_005960' => 'dca', 'DCAR_012104' => 'dca', 'DCAR_012105' => 'dca', 'DCAR_012293' => 'dca', 'DCAR_015632' => 'dca', 'DCAR_024602' => 'dca', 'DCAR_028752' => 'dca', 'Dinv06261' => 'din', 'Dinv13982' => 'din', 'Dinv17029' => 'din', 'Dinv18463' => 'din', 'Dinv33181' => 'din', 'Dinv35585' => 'din', 'Dinv37161' => 'din', 'Dinv42977' => 'din', 'Dinv43122' => 'din', 'Dinv44517' => 'din', 'Duzib093G0256' => 'dzi', 'Duzib106G1254' => 'dzi', 'Duzib128G1789' => 'dzi', 'Duzib133G0633' => 'dzi', 'Duzib138G0510' => 'dzi', 'Duzib150G1084' => 'dzi', 'Duzib168G0488' => 'dzi', 'Duzib168G1523' => 'dzi', 'Duzib170G0133' => 'dzi', 'ECA234G1433' => 'eca', 'ECA236G1432' => 'eca', 'ECA236G2256' => 'eca', 'ECA236G2365' => 'eca', 'ECA236G4830' => 'eca', 'ECA248G1505' => 'eca', 'EL10Ac3g06431' => 'bvu', 'EL10Ac5g12577' => 'bvu', 'EL10Ac6g13533' => 'bvu', 'EL10Ac7g16045' => 'bvu', 'Eucgr.A01281' => 'egr', 'Eucgr.B02326' => 'egr', 'Eucgr.H03532' => 'egr', 'Eucgr.K00553' => 'egr', 'Eucgr.K03116' => 'egr', 'FAN02G3963' => 'fan', 'FAN05G0438' => 'fan', 'FAN09G2434' => 'fan', 'FAN12G3984' => 'fan', 'FAN14G0798' => 'fan', 'FAN17G0652' => 'fan', 'FAN19G1988' => 'fan', 'FAN22G0632' => 'fan', 'FAN23G0387' => 'fan', 'FAN26G1323' => 'fan', 'FAN28G0666' => 'fan', 'FvH4_1g26080' => 'fve', 'FvH4_3g36780' => 'fve', 'FvH4_4g15270' => 'fve', 'FvH4_6g13490' => 'fve', 'Glyma.01G098700' => 'gma', 'Glyma.03G065900' => 'gma', 'Glyma.03G073754' => 'gma', 'Glyma.03G073758' => 'gma', 'Glyma.03G083200' => 'gma', 'Glyma.03G225500' => 'gma', 'Glyma.05G037766' => 'gma', 'Glyma.07G133500' => 'gma', 'Glyma.10G139400' => 'gma', 'Glyma.10G248900' => 'gma', 'Glyma.11G137800' => 'gma', 'Glyma.12G061300' => 'gma', 'Glyma.13G337900' => 'gma', 'Glyma.15G036600' => 'gma', 'Glyma.18G182800' => 'gma', 'Glyma.19G222500' => 'gma', 'Glyma.20G144800' => 'gma', 'Gohir.A01G222000' => 'ghi', 'Gohir.A03G044000' => 'ghi', 'Gohir.A03G044100' => 'ghi', 'Gohir.A04G083100' => 'ghi', 'Gohir.A07G127200' => 'ghi', 'Gohir.A07G132400' => 'ghi', 'Gohir.A08G000700' => 'ghi', 'Gohir.A11G327300' => 'ghi', 'Gohir.D01G211500' => 'ghi', 'Gohir.D03G123400' => 'ghi', 'Gohir.D03G123500' => 'ghi', 'Gohir.D04G121800' => 'ghi', 'Gohir.D07G131500' => 'ghi', 'Gohir.D07G136600' => 'ghi', 'Gohir.D08G011600' => 'ghi', 'Gohir.D11G346200' => 'ghi', 'Gorai.001G142800' => 'gra', 'Gorai.001G148700' => 'gra', 'Gorai.002G257300' => 'gra', 'Gorai.003G130000' => 'gra', 'Gorai.003G130100' => 'gra', 'Gorai.004G005300' => 'gra', 'Gorai.007G376500' => 'gra', 'Gorai.012G104700' => 'gra', 'GSVIVG01017946001' => 'vvi', 'GSVIVG01024928001' => 'vvi', 'GSVIVG01028227001' => 'vvi', 'GSVIVG01034151001' => 'vvi', 'HanXRQChr05g0135031' => 'han', 'HanXRQChr05g0135041' => 'han', 'HanXRQChr05g0140021' => 'han', 'HanXRQChr06g0178981' => 'han', 'HanXRQChr07g0188251' => 'han', 'HanXRQChr08g0235311' => 'han', 'HanXRQChr09g0271011' => 'han', 'HanXRQChr10g0293321' => 'han', 'HanXRQChr13g0388171' => 'han', 'Haze_00916' => 'cav', 'Haze_05063' => 'cav', 'Haze_20814' => 'cav', 'Haze_24128' => 'cav', 'Hma1.2p1_0745F.1_g212010' => 'hma', 'Hma1.2p1_0757F.1_g213260' => 'hma', 'Hma1.2p1_0936F.1_g238840' => 'hma', 'Hma1.2p1_1735F.1_g299890' => 'hma', 'Hma1.2p1_1861F.1_g305685' => 'hma', 'HPP92_003397' => 'vpl', 'HPP92_012597' => 'vpl', 'HPP92_015520' => 'vpl', 'HPP92_015539' => 'vpl', 'HPP92_020373' => 'vpl', 'Hund04938' => 'sun', 'Hund10677' => 'sun', 'Hund11033' => 'sun', 'Hund12155' => 'sun', 'Lalb_Chr01g0022551' => 'lal', 'Lalb_Chr03g0042341' => 'lal', 'Lalb_Chr07g0192931' => 'lal', 'Lalb_Chr12g0209551' => 'lal', 'Lalb_Chr19g0125251' => 'lal', 'Lalb_Chr19g0137891' => 'lal', 'Lalb_Chr21g0304641' => 'lal', 'Lalb_Chr21g0309881' => 'lal', 'Lj1A5T12' => 'lonja', 'Lj1C148G10' => 'lonja', 'Lj2A93T83' => 'lonja', 'Lj3A738G68' => 'lonja', 'Lj3C966T1' => 'lonja', 'Lj3g0018958' => 'lja', 'Lj3g0021831' => 'lja', 'Lj3g0025443' => 'lja', 'Lj4g0026809' => 'lja', 'Lj5g0012558' => 'lja', 'Lj5g0021586' => 'lja', 'Lsat_1_v5_gn_5_156840' => 'lsa', 'Lsat_1_v5_gn_8_73460' => 'lsa', 'Lsat_1_v5_gn_8_73481' => 'lsa', 'Lsat_1_v5_gn_9_31601' => 'lsa', 'Lsat_1_v5_gn_9_77320' => 'lsa', 'Manes.01G171300' => 'mes', 'Manes.01G171400' => 'mes', 'Manes.01G236100' => 'mes', 'Manes.02G130500' => 'mes', 'Manes.02G130600' => 'mes', 'Manes.03G180200' => 'mes', 'Manes.05G007000' => 'mes', 'Manes.08G084400' => 'mes', 'Manes.09G092600' => 'mes', 'Manes.15G027900' => 'mes', 'MBI04_g40948_MAGBIO' => 'mbi', 'MBI14_g12123_MAGBIO' => 'mbi', 'MBI18_g28915_MAGBIO' => 'mbi', 'MCO09G053' => 'mco', 'MCO11G782' => 'mco', 'MCO15G215' => 'mco', 'MD03G1088500' => 'mdo', 'MD03G1088600' => 'mdo', 'MD04G1130800' => 'mdo', 'MD09G1291700' => 'mdo', 'MD11G1097500' => 'mdo', 'MD11G1097600' => 'mdo', 'MD12G1143900' => 'mdo', 'MD13G1191400' => 'mdo', 'MD16G1191500' => 'mdo', 'Medtr1g085570' => 'mtr', 'Medtr1g104610' => 'mtr', 'Medtr2g097520' => 'mtr', 'Medtr4g021800' => 'mtr', 'Medtr4g021825' => 'mtr', 'Medtr4g064270' => 'mtr', 'Medtr4g064380' => 'mtr', 'Medtr7g062150' => 'mtr', 'MELO3C003138.2' => 'cme', 'MELO3C005187.2' => 'cme', 'MELO3C009252.2' => 'cme', 'MELO3C014481.2' => 'cme', 'MELO3C020616.2' => 'cme', 'MELO3C020617.2' => 'cme', 'MELO3C020618.2' => 'cme', 'Migut.G00328' => 'egut', 'Migut.J00320' => 'egut', 'Migut.L01000' => 'egut', 'Migut.L01953' => 'egut', 'MSTRG.10253' => 'ama', 'MSTRG.19077' => 'ama', 'MSTRG.26780' => 'ama', 'MSTRG.4023' => 'ama', 'MSTRG.5655' => 'ama', 'MSTRG.9992' => 'ama', 'Nitab4.5_0000043g0310' => 'nta', 'Nitab4.5_0000463g0080' => 'nta', 'Nitab4.5_0000705g0170' => 'nta', 'Nitab4.5_0001326g0060' => 'nta', 'Nitab4.5_0001628g0030' => 'nta', 'Nitab4.5_0002103g0110' => 'nta', 'Nitab4.5_0002946g0030' => 'nta', 'Nitab4.5_0004639g0030' => 'nta', 'Nn2g11149' => 'nnu', 'Nn2g13389' => 'nnu', 'Nn4g25326' => 'nnu', 'Nn4g26290' => 'nnu', 'Nn5g29865' => 'nnu', 'Oeu004163.1' => 'oeu', 'Oeu006901.1' => 'oeu', 'Oeu010096.1' => 'oeu', 'Oeu024340.1' => 'oeu', 'Oeu048369.1' => 'oeu', 'Os01g0973000' => 'osa', 'Os03g0273800' => 'osa', 'Os03g0701200' => 'osa', 'Os03g0834050' => 'osa', 'Os07g0634400' => 'osa', 'Peaxi162Scf00092g01414' => 'pax', 'Peaxi162Scf00165g00818' => 'pax', 'Peaxi162Scf00309g00516' => 'pax', 'Peaxi162Scf00774g00218' => 'pax', 'PGR004G1824' => 'pgr', 'PGR004G2606' => 'pgr', 'PGR031G2716' => 'pgr', 'PGR102G2460' => 'pgr', 'PGR142G2599' => 'pgr', 'PGSC0003DMG400000843' => 'stu', 'PGSC0003DMG400008829' => 'stu', 'PGSC0003DMG400030418' => 'stu', 'PGSC0003DMG400031834' => 'stu', 'PGSC0003DMG401028300' => 'stu', 'PGSC0003DMG402028300' => 'stu', 'Phvul.001G219300' => 'pvu', 'Phvul.007G056000' => 'pvu', 'Phvul.007G208000' => 'pvu', 'Phvul.008G119500' => 'pvu', 'Phvul.010G011200' => 'pvu', 'Phvul.010G014800' => 'pvu', 'Phvul.011G062900' => 'pvu', 'Phvul.L007043' => 'pvu', 'Potri.001G242300' => 'ptr', 'Potri.002G185300' => 'ptr', 'Potri.006G086900' => 'ptr', 'Potri.008G151700' => 'ptr', 'Potri.009G033500' => 'ptr', 'Potri.010G089300' => 'ptr', 'Potri.014G110800' => 'ptr', 'Pp3c27_8130' => 'ppa', 'Pp3c6_27410' => 'ppa', 'PRCOL_00001659' => 'pco', 'PRCOL_00001927' => 'pco', 'PRCOL_00003649' => 'pco', 'Prupe.1G011600' => 'ppe', 'Prupe.3G000800' => 'ppe', 'Prupe.3G001100' => 'ppe', 'Prupe.6G072700' => 'ppe', 'Prupe.6G072800' => 'ppe', 'Prupe.6G257300' => 'ppe', 'Prupe.8G033000' => 'ppe', 'Psat0s2633g0080' => 'psa', 'Psat0s3396g0080' => 'psa', 'Psat0s3396g0200' => 'psa', 'Psat3g139080' => 'psa', 'Psat5g285080' => 'psa', 'Psat6g157760' => 'psa', 'Psat6g208440' => 'psa', 'Psat7g215320' => 'psa', 'Psat7g215400' => 'psa', 'Psat7g235600' => 'psa', 'Psat7g235760' => 'psa', 'PSO063G4603' => 'pso', 'PSO210G0182' => 'pso', 'PSO210G0196' => 'pso', 'PSO339G0394' => 'pso', 'PSO339G4127' => 'pso', 'PSO513G0064' => 'pso', 'PSO761G0079' => 'pso', 'QL01p031003' => 'qlo', 'QL01p031078' => 'qlo', 'QL06p003004' => 'qlo', 'QL07p048731' => 'qlo', 'QL09p037427' => 'qlo', 'RcHm_v2.0_Chr3g0466361' => 'rch', 'RcHm_v2.0_Chr3g0485571' => 'rch', 'RcHm_v2.0_Chr4g0416551' => 'rch', 'RcHm_v2.0_Chr5g0065831' => 'rch', 'Rhsim01G0230500' => 'rsi', 'Rhsim05G0194000' => 'rsi', 'Rhsim08G0250400' => 'rsi', 'Sabra02G0131000' => 'sbr', 'Sabra06G0066300' => 'sbr', 'Sabra08G0115500' => 'sbr', 'Sabra09G0023900' => 'sbr', 'Sabra10G0054000' => 'sbr', 'Sabra14G0081500' => 'sbr', 'Sabra16G0147100' => 'sbr', 'SalBow2G2957' => 'sbo', 'SalBow4G3320' => 'sbo', 'SalBow8G1894' => 'sbo', 'Sc07g0007950' => 'sci', 'Sc12g0001360' => 'sci', 'Sc13g0004330' => 'sci', 'Sc20g0005010' => 'sci', 'Sed0000361' => 'sed', 'Sed0001706' => 'sed', 'Sed0002422' => 'sed', 'Sed0004029' => 'sed', 'Sed0004602' => 'sed', 'Sed0004943' => 'sed', 'Sed0008646' => 'sed', 'Sed0023313' => 'sed', 'Sed0024843' => 'sed', 'SEGI_00081' => 'sgi', 'SEGI_00947' => 'sgi', 'SEGI_04046' => 'sgi', 'SEGI_06880' => 'sgi', 'SEGI_09736' => 'sgi', 'SEGI_12741' => 'sgi', 'SEGI_14530' => 'sgi', 'SEGI_20705' => 'sgi', 'SEGI_26088' => 'sgi', 'SEGI_28323' => 'sgi', 'SEGI_33343' => 'sgi', 'SGA_v2.0_scaffold126G33775' => 'sas', 'SGA_v2.0_scaffold2G01337' => 'sas', 'SGA_v2.0_scaffold38G15006' => 'sas', 'SGA_v2.0_scaffold39G15264' => 'sas', 'SGA_v2.0_scaffold453G51880' => 'sas', 'SHI12696' => 'shi', 'SMO367G1096' => 'smo', 'Solyc01g068630.3' => 'sly', 'Solyc05g011880.3' => 'sly', 'Solyc06g076300.3' => 'sly', 'Solyc09g010940.4' => 'sly', 'Solyc09g075890.3' => 'sly', 'Sopen01g030560' => 'spe', 'Sopen05g006630' => 'spe', 'Sopen06g032720' => 'spe', 'Sopen09g005660' => 'spe', 'Sopen09g030690' => 'spe', 'Sp4g14540' => 'spa', 'Sp4g20030' => 'spa', 'Sp5g01320' => 'spa', 'Sp6g21170' => 'spa', 'Sp6g21180' => 'spa', 'Sp6g21190' => 'spa', 'Sp6g40220' => 'spa', 'TAR362G0122' => 'tar', 'TAR362G1338' => 'tar', 'TAR369G0590' => 'tar', 'TAR371G0824' => 'tar', 'TAR622G1429' => 'tar', 'TAR623G0734' => 'tar', 'TAR625G0441' => 'tar', 'TAR629G0976' => 'tar', 'TAR633G1195' => 'tar', 'TAR636G2660' => 'tar', 'THA.LOC104799440' => 'tha', 'THA.LOC104800966' => 'tha', 'THA.LOC104806559' => 'tha', 'THA.LOC104810765' => 'tha', 'THA.LOC104816266' => 'tha', 'THA.LOC104817419' => 'tha', 'THA.LOC104827021' => 'tha', 'Thecc.01G327400' => 'tca', 'Thecc.04G229200' => 'tca', 'Thecc.05G037400' => 'tca', 'Thecc.09G318600' => 'tca', 'Thecc.09G318700' => 'tca', 'Thhalv10006238m.g' => 'esa', 'Thhalv10014321m.g' => 'esa', 'Thhalv10014335m.g' => 'esa', 'Thhalv10015826m.g' => 'esa', 'Thhalv10017107m.g' => 'esa', 'Thhalv10017180m.g' => 'esa', 'Thhalv10029339m.g' => 'esa', 'TPR.G1699' => 'tpr', 'TPR.G23609' => 'tpr', 'TPR.G3081' => 'tpr', 'TPR.G40397' => 'tpr', 'TPR.G5522' => 'tpr', 'TPR.G5618' => 'tpr', 'TPR.G5626' => 'tpr', 'TWI09G1632' => 'twi', 'TWI23G1230' => 'twi', 'TWI53G1064' => 'twi', 'TWI59G0751' => 'twi', 'TWI74G0947' => 'twi', 'TWI77G0337' => 'twi', 'TWI79G1254' => 'twi', 'unitig_0.g2341' => 'ugi', 'unitig_26.g10006' => 'ugi', 'unitig_26.g10008' => 'ugi', 'unitig_26.g9192' => 'ugi', 'vmacro14547' => 'vma', 'vmacro15333' => 'vma', 'vmacro18743' => 'vma', 'vmacro20166' => 'vma', 'VMungo0331G0523' => 'vmu', 'VMungo0331G1202' => 'vmu', 'VMungo0720G1228' => 'vmu', 'VMungo0720G1514' => 'vmu', 'VMungo1080G0169' => 'vmu', 'VMungo1127G1475' => 'vmu', 'VMungo1383G1208' => 'vmu', 'VMungo1383G1698' => 'vmu', 'Zm00001eb012270' => 'zma', 'Zm00001eb054100' => 'zma', 'Zm00001eb063350' => 'zma', 'Zm00001eb328560' => 'zma', 'Zm00001eb342820' => 'zma', 'Zm00001eb362210' => 'zma', 'Zm00001eb397730' => 'zma', 'Zm00001eb399750' => 'zma' ) $gf_id = 'HOM05D000959' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000959' ) $data_identifier = 'HOM05D000959' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 5, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 5, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 10, 'mbi' => (int) 3, 'mco' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 2, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 3, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 11, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399750' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000959', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '622', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p07100' => 'bna', 'A03p11720' => 'bna', 'A05p08300' => 'bna', 'A05p13380' => 'bna', 'A09p54130' => 'bna', 'A10p16690' => 'bna', 'A10p16700' => 'bna', 'A10p33390' => 'bna', 'Aa31LG10G16020' => 'aar', 'Aa31LG1G11810' => 'aar', 'Aa31LG1G11830' => 'aar', 'Aa31LG1G22510' => 'aar', 'Aa31LG5G4890' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5793' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2310' => 'aag', 'Actinidia08499' => 'ach', 'Actinidia11262' => 'ach', 'Actinidia23926' => 'ach', 'Actinidia34420' => 'ach', 'Actinidia36970' => 'ach', 'Ah.02g111220' => 'amhyb', 'Ah.15g097750' => 'amhyb', 'AL4G27500' => 'aly', 'AL6G11470' => 'aly', 'AL8G35950' => 'aly', 'AL8G35960' => 'aly', 'AL8G35970' => 'aly', 'Aqoxy1G00912' => 'aox', 'Aqoxy2G02253' => 'aox', 'Aqoxy2G02411' => 'aox', 'Aqoxy5G00485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BZ66YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K8ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM4FUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6BF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HFV7XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25JBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0YNNV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MAKK6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P70IT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP2Z6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V61LZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YWP64R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3S9AI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7PGHH' => 'arhy', 'AT2G32150' => 'ath', 'AT3G62040' => 'ath', 'AT5G02230' => 'ath', 'AT5G59480' => 'ath', 'AT5G59490' => 'ath', 'ATR0332G060' => 'atr', 'ATR0559G190' => 'atr', 'ATR0693G294' => 'atr', 'Atru.chr3.3975' => 'acertr', 'Atru.chr3.3976' => 'acertr', 'Atru.chr3.3977' => 'acertr', 'Atru.chr4.2498' => 'acertr', 'Atru.chr5.838' => 'acertr', 'Atru.chr8.1990' => 'acertr', 'Atru.chr8.1991' => 'acertr', 'Atru.chr8.1992' => 'acertr', 'AUR62001759' => 'cqu', 'AUR62009545' => 'cqu', 'AUR62010474' => 'cqu', 'AUR62025820' => 'cqu', 'AUR62030422' => 'cqu', 'AUR62033605' => 'cqu', 'AUR62038615' => 'cqu', 'AUR62041347' => 'cqu', 'BcaB01g04574' => 'bca', 'BcaB02g09263' => 'bca', 'BcaB02g10453' => 'bca', 'BcaB05g22513' => 'bca', 'BcaB08g36253' => 'bca', 'BcaB08g36254' => 'bca', 'BcaC01g06519' => 'bca', 'BcaC02g11889' => 'bca', 'BcaC03g14010' => 'bca', 'BcaC03g18439' => 'bca', 'BcaC04g19765' => 'bca', 'BcaC09g48432' => 'bca', 'BcaNung07302' => 'bca', 'BolC2t06040H' => 'bol', 'BolC2t07346H' => 'bol', 'BolC3t13817H' => 'bol', 'BolC4t22625H' => 'bol', 'BolC4t23297H' => 'bol', 'BolC8t51278H' => 'bol', 'BolC9t58050H' => 'bol', 'BolC9t58051H' => 'bol', 'BolC9t60163H' => 'bol', 'BraA02t04712Z' => 'bra', 'BraA02t05791Z' => 'bra', 'BraA03t10483Z' => 'bra', 'BraA05t19795Z' => 'bra', 'BraA05t20276Z' => 'bra', 'BraA09t40827Z' => 'bra', 'BraA10t43750Z' => 'bra', 'BraA10t43751Z' => 'bra', 'BraA10t45370Z' => 'bra', 'C02p00400' => 'bna', 'C02p12460' => 'bna', 'C03p13680' => 'bna', 'C04p10270' => 'bna', 'C04p17500' => 'bna', 'C08p37010' => 'bna', 'C09p51880' => 'bna', 'C09p51890' => 'bna', 'C09p74300' => 'bna', 'CAN.G179.26' => 'can', 'CAN.G3384.1' => 'can', 'CAN.G394.68' => 'can', 'CAN.G907.13' => 'can', 'CANSAT11G0012' => 'cansat', 'CANSAT25G1586' => 'cansat', 'CANSAT35G0735' => 'cansat', 'CANSAT54G0556' => 'cansat', 'CANSAT64G0356' => 'cansat', 'CANSAT78G2042' => 'cansat', 'CARHR125920' => 'chi', 'CARHR131910' => 'chi', 'CARHR172390' => 'chi', 'CARHR211140' => 'chi', 'CARHR285850' => 'chi', 'CARHR285860' => 'chi', 'Carub.0004s1347' => 'cru', 'Carub.0004s1960' => 'cru', 'Carub.0005s2880' => 'cru', 'Carub.0006s0107' => 'cru', 'Carub.0008s2015' => 'cru', 'Carub.0008s2016' => 'cru', 'Carub.0008s2017' => 'cru', 'Ca_01315_v3' => 'car', 'Ca_05063_v3' => 'car', 'Ca_10231_v3' => 'car', 'Ca_10913_v3' => 'car', 'Ca_19156_v3' => 'car', 'Ca_23644_v3' => 'car', 'Ca_26735_v3' => 'car', 'Cc01_g13130' => 'ccan', 'Cc02_g21690' => 'ccan', 'Cc03_g03600' => 'ccan', 'Cc06_g02510' => 'ccan', 'CDE02G1265' => 'cde', 'CDE05G0415' => 'cde', 'CDE08G1082' => 'cde', 'Cfa005780' => 'cfa', 'Cfa011522' => 'cfa', 'Cfa011523' => 'cfa', 'Cfa015627' => 'cfa', 'Cfa017359' => 'cfa', 'Ciclev10005687m.g' => 'ccl', 'Ciclev10012173m.g' => 'ccl', 'Ciclev10021621m.g' => 'ccl', 'Ciclev10028968m.g' => 'ccl', 'Ciclev10029907m.g' => 'ccl', 'CiPaw.01G164800' => 'cil', 'CiPaw.07G083700' => 'cil', 'CiPaw.07G127000' => 'cil', 'CiPaw.07G136900' => 'cil', 'CiPaw.08G081700' => 'cil', 'CiPaw.09G194600' => 'cil', 'CiPaw.10G146500' => 'cil', 'CiPaw.13G091500' => 'cil', 'CiPaw.13G091600' => 'cil', 'ClCG00G003390' => 'cla', 'ClCG01G007220' => 'cla', 'ClCG03G001370' => 'cla', 'ClCG04G008100' => 'cla', 'ClCG06G006110' => 'cla', 'ClCG06G006130' => 'cla', 'ClCG10G021210' => 'cla', 'COL.COLO4_07648' => 'col', 'COL.COLO4_07650' => 'col', 'COL.COLO4_07651' => 'col', 'COL.COLO4_14780' => 'col', 'COL.COLO4_18546' => 'col', 'COL.COLO4_18547' => 'col', 'COL.COLO4_23103' => 'col', 'COL.COLO4_30419' => 'col', 'COL.COLO4_34232' => 'col', 'Cpa.g.sc169.20' => 'cpa', 'Cpa.g.sc57.45' => 'cpa', 'Cpa.g.sc58.124' => 'cpa', 'Cpa.g.sc58.125' => 'cpa', 'Cpa.g.sc81.118' => 'cpa', 'Cpa.g.sc81.119' => 'cpa', 'Cre12.g524700' => 'cre', 'CsaV3_1G034430' => 'csa', 'CsaV3_1G034440' => 'csa', 'CsaV3_1G034450' => 'csa', 'CsaV3_3G034830' => 'csa', 'CsaV3_4G025090' => 'csa', 'CsaV3_5G018660' => 'csa', 'CsaV3_6G038160' => 'csa', 'CSS0003447' => 'camsi', 'CSS0017840' => 'camsi', 'CSS0019260' => 'camsi', 'CSS0040375' => 'camsi', 'CSS0042533' => 'camsi', 'DCAR_005960' => 'dca', 'DCAR_012104' => 'dca', 'DCAR_012105' => 'dca', 'DCAR_012293' => 'dca', 'DCAR_015632' => 'dca', 'DCAR_024602' => 'dca', 'DCAR_028752' => 'dca', 'Dinv06261' => 'din', 'Dinv13982' => 'din', 'Dinv17029' => 'din', 'Dinv18463' => 'din', 'Dinv33181' => 'din', 'Dinv35585' => 'din', 'Dinv37161' => 'din', 'Dinv42977' => 'din', 'Dinv43122' => 'din', 'Dinv44517' => 'din', 'Duzib093G0256' => 'dzi', 'Duzib106G1254' => 'dzi', 'Duzib128G1789' => 'dzi', 'Duzib133G0633' => 'dzi', 'Duzib138G0510' => 'dzi', 'Duzib150G1084' => 'dzi', 'Duzib168G0488' => 'dzi', 'Duzib168G1523' => 'dzi', 'Duzib170G0133' => 'dzi', 'ECA234G1433' => 'eca', 'ECA236G1432' => 'eca', 'ECA236G2256' => 'eca', 'ECA236G2365' => 'eca', 'ECA236G4830' => 'eca', 'ECA248G1505' => 'eca', 'EL10Ac3g06431' => 'bvu', 'EL10Ac5g12577' => 'bvu', 'EL10Ac6g13533' => 'bvu', 'EL10Ac7g16045' => 'bvu', 'Eucgr.A01281' => 'egr', 'Eucgr.B02326' => 'egr', 'Eucgr.H03532' => 'egr', 'Eucgr.K00553' => 'egr', 'Eucgr.K03116' => 'egr', 'FAN02G3963' => 'fan', 'FAN05G0438' => 'fan', 'FAN09G2434' => 'fan', 'FAN12G3984' => 'fan', 'FAN14G0798' => 'fan', 'FAN17G0652' => 'fan', 'FAN19G1988' => 'fan', 'FAN22G0632' => 'fan', 'FAN23G0387' => 'fan', 'FAN26G1323' => 'fan', 'FAN28G0666' => 'fan', 'FvH4_1g26080' => 'fve', 'FvH4_3g36780' => 'fve', 'FvH4_4g15270' => 'fve', 'FvH4_6g13490' => 'fve', 'Glyma.01G098700' => 'gma', 'Glyma.03G065900' => 'gma', 'Glyma.03G073754' => 'gma', 'Glyma.03G073758' => 'gma', 'Glyma.03G083200' => 'gma', 'Glyma.03G225500' => 'gma', 'Glyma.05G037766' => 'gma', 'Glyma.07G133500' => 'gma', 'Glyma.10G139400' => 'gma', 'Glyma.10G248900' => 'gma', 'Glyma.11G137800' => 'gma', 'Glyma.12G061300' => 'gma', 'Glyma.13G337900' => 'gma', 'Glyma.15G036600' => 'gma', 'Glyma.18G182800' => 'gma', 'Glyma.19G222500' => 'gma', 'Glyma.20G144800' => 'gma', 'Gohir.A01G222000' => 'ghi', 'Gohir.A03G044000' => 'ghi', 'Gohir.A03G044100' => 'ghi', 'Gohir.A04G083100' => 'ghi', 'Gohir.A07G127200' => 'ghi', 'Gohir.A07G132400' => 'ghi', 'Gohir.A08G000700' => 'ghi', 'Gohir.A11G327300' => 'ghi', 'Gohir.D01G211500' => 'ghi', 'Gohir.D03G123400' => 'ghi', 'Gohir.D03G123500' => 'ghi', 'Gohir.D04G121800' => 'ghi', 'Gohir.D07G131500' => 'ghi', 'Gohir.D07G136600' => 'ghi', 'Gohir.D08G011600' => 'ghi', 'Gohir.D11G346200' => 'ghi', 'Gorai.001G142800' => 'gra', 'Gorai.001G148700' => 'gra', 'Gorai.002G257300' => 'gra', 'Gorai.003G130000' => 'gra', 'Gorai.003G130100' => 'gra', 'Gorai.004G005300' => 'gra', 'Gorai.007G376500' => 'gra', 'Gorai.012G104700' => 'gra', 'GSVIVG01017946001' => 'vvi', 'GSVIVG01024928001' => 'vvi', 'GSVIVG01028227001' => 'vvi', 'GSVIVG01034151001' => 'vvi', 'HanXRQChr05g0135031' => 'han', 'HanXRQChr05g0135041' => 'han', 'HanXRQChr05g0140021' => 'han', 'HanXRQChr06g0178981' => 'han', 'HanXRQChr07g0188251' => 'han', 'HanXRQChr08g0235311' => 'han', 'HanXRQChr09g0271011' => 'han', 'HanXRQChr10g0293321' => 'han', 'HanXRQChr13g0388171' => 'han', 'Haze_00916' => 'cav', 'Haze_05063' => 'cav', 'Haze_20814' => 'cav', 'Haze_24128' => 'cav', 'Hma1.2p1_0745F.1_g212010' => 'hma', 'Hma1.2p1_0757F.1_g213260' => 'hma', 'Hma1.2p1_0936F.1_g238840' => 'hma', 'Hma1.2p1_1735F.1_g299890' => 'hma', 'Hma1.2p1_1861F.1_g305685' => 'hma', 'HPP92_003397' => 'vpl', 'HPP92_012597' => 'vpl', 'HPP92_015520' => 'vpl', 'HPP92_015539' => 'vpl', 'HPP92_020373' => 'vpl', 'Hund04938' => 'sun', 'Hund10677' => 'sun', 'Hund11033' => 'sun', 'Hund12155' => 'sun', 'Lalb_Chr01g0022551' => 'lal', 'Lalb_Chr03g0042341' => 'lal', 'Lalb_Chr07g0192931' => 'lal', 'Lalb_Chr12g0209551' => 'lal', 'Lalb_Chr19g0125251' => 'lal', 'Lalb_Chr19g0137891' => 'lal', 'Lalb_Chr21g0304641' => 'lal', 'Lalb_Chr21g0309881' => 'lal', 'Lj1A5T12' => 'lonja', 'Lj1C148G10' => 'lonja', 'Lj2A93T83' => 'lonja', 'Lj3A738G68' => 'lonja', 'Lj3C966T1' => 'lonja', 'Lj3g0018958' => 'lja', 'Lj3g0021831' => 'lja', 'Lj3g0025443' => 'lja', 'Lj4g0026809' => 'lja', 'Lj5g0012558' => 'lja', 'Lj5g0021586' => 'lja', 'Lsat_1_v5_gn_5_156840' => 'lsa', 'Lsat_1_v5_gn_8_73460' => 'lsa', 'Lsat_1_v5_gn_8_73481' => 'lsa', 'Lsat_1_v5_gn_9_31601' => 'lsa', 'Lsat_1_v5_gn_9_77320' => 'lsa', 'Manes.01G171300' => 'mes', 'Manes.01G171400' => 'mes', 'Manes.01G236100' => 'mes', 'Manes.02G130500' => 'mes', 'Manes.02G130600' => 'mes', 'Manes.03G180200' => 'mes', 'Manes.05G007000' => 'mes', 'Manes.08G084400' => 'mes', 'Manes.09G092600' => 'mes', 'Manes.15G027900' => 'mes', 'MBI04_g40948_MAGBIO' => 'mbi', 'MBI14_g12123_MAGBIO' => 'mbi', 'MBI18_g28915_MAGBIO' => 'mbi', 'MCO09G053' => 'mco', 'MCO11G782' => 'mco', 'MCO15G215' => 'mco', 'MD03G1088500' => 'mdo', 'MD03G1088600' => 'mdo', 'MD04G1130800' => 'mdo', 'MD09G1291700' => 'mdo', 'MD11G1097500' => 'mdo', 'MD11G1097600' => 'mdo', 'MD12G1143900' => 'mdo', 'MD13G1191400' => 'mdo', 'MD16G1191500' => 'mdo', 'Medtr1g085570' => 'mtr', 'Medtr1g104610' => 'mtr', 'Medtr2g097520' => 'mtr', 'Medtr4g021800' => 'mtr', 'Medtr4g021825' => 'mtr', 'Medtr4g064270' => 'mtr', 'Medtr4g064380' => 'mtr', 'Medtr7g062150' => 'mtr', 'MELO3C003138.2' => 'cme', 'MELO3C005187.2' => 'cme', 'MELO3C009252.2' => 'cme', 'MELO3C014481.2' => 'cme', 'MELO3C020616.2' => 'cme', 'MELO3C020617.2' => 'cme', 'MELO3C020618.2' => 'cme', 'Migut.G00328' => 'egut', 'Migut.J00320' => 'egut', 'Migut.L01000' => 'egut', 'Migut.L01953' => 'egut', 'MSTRG.10253' => 'ama', 'MSTRG.19077' => 'ama', 'MSTRG.26780' => 'ama', 'MSTRG.4023' => 'ama', 'MSTRG.5655' => 'ama', 'MSTRG.9992' => 'ama', 'Nitab4.5_0000043g0310' => 'nta', 'Nitab4.5_0000463g0080' => 'nta', 'Nitab4.5_0000705g0170' => 'nta', 'Nitab4.5_0001326g0060' => 'nta', 'Nitab4.5_0001628g0030' => 'nta', 'Nitab4.5_0002103g0110' => 'nta', 'Nitab4.5_0002946g0030' => 'nta', 'Nitab4.5_0004639g0030' => 'nta', 'Nn2g11149' => 'nnu', 'Nn2g13389' => 'nnu', 'Nn4g25326' => 'nnu', 'Nn4g26290' => 'nnu', 'Nn5g29865' => 'nnu', 'Oeu004163.1' => 'oeu', 'Oeu006901.1' => 'oeu', 'Oeu010096.1' => 'oeu', 'Oeu024340.1' => 'oeu', 'Oeu048369.1' => 'oeu', 'Os01g0973000' => 'osa', 'Os03g0273800' => 'osa', 'Os03g0701200' => 'osa', 'Os03g0834050' => 'osa', 'Os07g0634400' => 'osa', 'Peaxi162Scf00092g01414' => 'pax', 'Peaxi162Scf00165g00818' => 'pax', 'Peaxi162Scf00309g00516' => 'pax', 'Peaxi162Scf00774g00218' => 'pax', 'PGR004G1824' => 'pgr', 'PGR004G2606' => 'pgr', 'PGR031G2716' => 'pgr', 'PGR102G2460' => 'pgr', 'PGR142G2599' => 'pgr', 'PGSC0003DMG400000843' => 'stu', 'PGSC0003DMG400008829' => 'stu', 'PGSC0003DMG400030418' => 'stu', 'PGSC0003DMG400031834' => 'stu', 'PGSC0003DMG401028300' => 'stu', 'PGSC0003DMG402028300' => 'stu', 'Phvul.001G219300' => 'pvu', 'Phvul.007G056000' => 'pvu', 'Phvul.007G208000' => 'pvu', 'Phvul.008G119500' => 'pvu', 'Phvul.010G011200' => 'pvu', 'Phvul.010G014800' => 'pvu', 'Phvul.011G062900' => 'pvu', 'Phvul.L007043' => 'pvu', 'Potri.001G242300' => 'ptr', 'Potri.002G185300' => 'ptr', 'Potri.006G086900' => 'ptr', 'Potri.008G151700' => 'ptr', 'Potri.009G033500' => 'ptr', 'Potri.010G089300' => 'ptr', 'Potri.014G110800' => 'ptr', 'Pp3c27_8130' => 'ppa', 'Pp3c6_27410' => 'ppa', 'PRCOL_00001659' => 'pco', 'PRCOL_00001927' => 'pco', 'PRCOL_00003649' => 'pco', 'Prupe.1G011600' => 'ppe', 'Prupe.3G000800' => 'ppe', 'Prupe.3G001100' => 'ppe', 'Prupe.6G072700' => 'ppe', 'Prupe.6G072800' => 'ppe', 'Prupe.6G257300' => 'ppe', 'Prupe.8G033000' => 'ppe', 'Psat0s2633g0080' => 'psa', 'Psat0s3396g0080' => 'psa', 'Psat0s3396g0200' => 'psa', 'Psat3g139080' => 'psa', 'Psat5g285080' => 'psa', 'Psat6g157760' => 'psa', 'Psat6g208440' => 'psa', 'Psat7g215320' => 'psa', 'Psat7g215400' => 'psa', 'Psat7g235600' => 'psa', 'Psat7g235760' => 'psa', 'PSO063G4603' => 'pso', 'PSO210G0182' => 'pso', 'PSO210G0196' => 'pso', 'PSO339G0394' => 'pso', 'PSO339G4127' => 'pso', 'PSO513G0064' => 'pso', 'PSO761G0079' => 'pso', 'QL01p031003' => 'qlo', 'QL01p031078' => 'qlo', 'QL06p003004' => 'qlo', 'QL07p048731' => 'qlo', 'QL09p037427' => 'qlo', 'RcHm_v2.0_Chr3g0466361' => 'rch', 'RcHm_v2.0_Chr3g0485571' => 'rch', 'RcHm_v2.0_Chr4g0416551' => 'rch', 'RcHm_v2.0_Chr5g0065831' => 'rch', 'Rhsim01G0230500' => 'rsi', 'Rhsim05G0194000' => 'rsi', 'Rhsim08G0250400' => 'rsi', 'Sabra02G0131000' => 'sbr', 'Sabra06G0066300' => 'sbr', 'Sabra08G0115500' => 'sbr', 'Sabra09G0023900' => 'sbr', 'Sabra10G0054000' => 'sbr', 'Sabra14G0081500' => 'sbr', 'Sabra16G0147100' => 'sbr', 'SalBow2G2957' => 'sbo', 'SalBow4G3320' => 'sbo', 'SalBow8G1894' => 'sbo', 'Sc07g0007950' => 'sci', 'Sc12g0001360' => 'sci', 'Sc13g0004330' => 'sci', 'Sc20g0005010' => 'sci', 'Sed0000361' => 'sed', 'Sed0001706' => 'sed', 'Sed0002422' => 'sed', 'Sed0004029' => 'sed', 'Sed0004602' => 'sed', 'Sed0004943' => 'sed', 'Sed0008646' => 'sed', 'Sed0023313' => 'sed', 'Sed0024843' => 'sed', 'SEGI_00081' => 'sgi', 'SEGI_00947' => 'sgi', 'SEGI_04046' => 'sgi', 'SEGI_06880' => 'sgi', 'SEGI_09736' => 'sgi', 'SEGI_12741' => 'sgi', 'SEGI_14530' => 'sgi', 'SEGI_20705' => 'sgi', 'SEGI_26088' => 'sgi', 'SEGI_28323' => 'sgi', 'SEGI_33343' => 'sgi', 'SGA_v2.0_scaffold126G33775' => 'sas', 'SGA_v2.0_scaffold2G01337' => 'sas', 'SGA_v2.0_scaffold38G15006' => 'sas', 'SGA_v2.0_scaffold39G15264' => 'sas', 'SGA_v2.0_scaffold453G51880' => 'sas', 'SHI12696' => 'shi', 'SMO367G1096' => 'smo', 'Solyc01g068630.3' => 'sly', 'Solyc05g011880.3' => 'sly', 'Solyc06g076300.3' => 'sly', 'Solyc09g010940.4' => 'sly', 'Solyc09g075890.3' => 'sly', 'Sopen01g030560' => 'spe', 'Sopen05g006630' => 'spe', 'Sopen06g032720' => 'spe', 'Sopen09g005660' => 'spe', 'Sopen09g030690' => 'spe', 'Sp4g14540' => 'spa', 'Sp4g20030' => 'spa', 'Sp5g01320' => 'spa', 'Sp6g21170' => 'spa', 'Sp6g21180' => 'spa', 'Sp6g21190' => 'spa', 'Sp6g40220' => 'spa', 'TAR362G0122' => 'tar', 'TAR362G1338' => 'tar', 'TAR369G0590' => 'tar', 'TAR371G0824' => 'tar', 'TAR622G1429' => 'tar', 'TAR623G0734' => 'tar', 'TAR625G0441' => 'tar', 'TAR629G0976' => 'tar', 'TAR633G1195' => 'tar', 'TAR636G2660' => 'tar', 'THA.LOC104799440' => 'tha', 'THA.LOC104800966' => 'tha', 'THA.LOC104806559' => 'tha', 'THA.LOC104810765' => 'tha', 'THA.LOC104816266' => 'tha', 'THA.LOC104817419' => 'tha', 'THA.LOC104827021' => 'tha', 'Thecc.01G327400' => 'tca', 'Thecc.04G229200' => 'tca', 'Thecc.05G037400' => 'tca', 'Thecc.09G318600' => 'tca', 'Thecc.09G318700' => 'tca', 'Thhalv10006238m.g' => 'esa', 'Thhalv10014321m.g' => 'esa', 'Thhalv10014335m.g' => 'esa', 'Thhalv10015826m.g' => 'esa', 'Thhalv10017107m.g' => 'esa', 'Thhalv10017180m.g' => 'esa', 'Thhalv10029339m.g' => 'esa', 'TPR.G1699' => 'tpr', 'TPR.G23609' => 'tpr', 'TPR.G3081' => 'tpr', 'TPR.G40397' => 'tpr', 'TPR.G5522' => 'tpr', 'TPR.G5618' => 'tpr', 'TPR.G5626' => 'tpr', 'TWI09G1632' => 'twi', 'TWI23G1230' => 'twi', 'TWI53G1064' => 'twi', 'TWI59G0751' => 'twi', 'TWI74G0947' => 'twi', 'TWI77G0337' => 'twi', 'TWI79G1254' => 'twi', 'unitig_0.g2341' => 'ugi', 'unitig_26.g10006' => 'ugi', 'unitig_26.g10008' => 'ugi', 'unitig_26.g9192' => 'ugi', 'vmacro14547' => 'vma', 'vmacro15333' => 'vma', 'vmacro18743' => 'vma', 'vmacro20166' => 'vma', 'VMungo0331G0523' => 'vmu', 'VMungo0331G1202' => 'vmu', 'VMungo0720G1228' => 'vmu', 'VMungo0720G1514' => 'vmu', 'VMungo1080G0169' => 'vmu', 'VMungo1127G1475' => 'vmu', 'VMungo1383G1208' => 'vmu', 'VMungo1383G1698' => 'vmu', 'Zm00001eb012270' => 'zma', 'Zm00001eb054100' => 'zma', 'Zm00001eb063350' => 'zma', 'Zm00001eb328560' => 'zma', 'Zm00001eb342820' => 'zma', 'Zm00001eb362210' => 'zma', 'Zm00001eb397730' => 'zma', 'Zm00001eb399750' => 'zma' ), 'gf_id' => 'HOM05D000959', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000959' ), 'data_identifier' => 'HOM05D000959', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000959', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '622', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p07100' => 'bna', 'A03p11720' => 'bna', 'A05p08300' => 'bna', 'A05p13380' => 'bna', 'A09p54130' => 'bna', 'A10p16690' => 'bna', 'A10p16700' => 'bna', 'A10p33390' => 'bna', 'Aa31LG10G16020' => 'aar', 'Aa31LG1G11810' => 'aar', 'Aa31LG1G11830' => 'aar', 'Aa31LG1G22510' => 'aar', 'Aa31LG5G4890' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5793' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2310' => 'aag', 'Actinidia08499' => 'ach', 'Actinidia11262' => 'ach', 'Actinidia23926' => 'ach', 'Actinidia34420' => 'ach', 'Actinidia36970' => 'ach', 'Ah.02g111220' => 'amhyb', 'Ah.15g097750' => 'amhyb', 'AL4G27500' => 'aly', 'AL6G11470' => 'aly', 'AL8G35950' => 'aly', 'AL8G35960' => 'aly', 'AL8G35970' => 'aly', 'Aqoxy1G00912' => 'aox', 'Aqoxy2G02253' => 'aox', 'Aqoxy2G02411' => 'aox', 'Aqoxy5G00485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BZ66YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K8ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM4FUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6BF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HFV7XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25JBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0YNNV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MAKK6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P70IT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP2Z6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V61LZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YWP64R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3S9AI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7PGHH' => 'arhy', 'AT2G32150' => 'ath', 'AT3G62040' => 'ath', 'AT5G02230' => 'ath', 'AT5G59480' => 'ath', 'AT5G59490' => 'ath', 'ATR0332G060' => 'atr', 'ATR0559G190' => 'atr', 'ATR0693G294' => 'atr', 'Atru.chr3.3975' => 'acertr', 'Atru.chr3.3976' => 'acertr', 'Atru.chr3.3977' => 'acertr', 'Atru.chr4.2498' => 'acertr', 'Atru.chr5.838' => 'acertr', 'Atru.chr8.1990' => 'acertr', 'Atru.chr8.1991' => 'acertr', 'Atru.chr8.1992' => 'acertr', 'AUR62001759' => 'cqu', 'AUR62009545' => 'cqu', 'AUR62010474' => 'cqu', 'AUR62025820' => 'cqu', 'AUR62030422' => 'cqu', 'AUR62033605' => 'cqu', 'AUR62038615' => 'cqu', 'AUR62041347' => 'cqu', 'BcaB01g04574' => 'bca', 'BcaB02g09263' => 'bca', 'BcaB02g10453' => 'bca', 'BcaB05g22513' => 'bca', 'BcaB08g36253' => 'bca', 'BcaB08g36254' => 'bca', 'BcaC01g06519' => 'bca', 'BcaC02g11889' => 'bca', 'BcaC03g14010' => 'bca', 'BcaC03g18439' => 'bca', 'BcaC04g19765' => 'bca', 'BcaC09g48432' => 'bca', 'BcaNung07302' => 'bca', 'BolC2t06040H' => 'bol', 'BolC2t07346H' => 'bol', 'BolC3t13817H' => 'bol', 'BolC4t22625H' => 'bol', 'BolC4t23297H' => 'bol', 'BolC8t51278H' => 'bol', 'BolC9t58050H' => 'bol', 'BolC9t58051H' => 'bol', 'BolC9t60163H' => 'bol', 'BraA02t04712Z' => 'bra', 'BraA02t05791Z' => 'bra', 'BraA03t10483Z' => 'bra', 'BraA05t19795Z' => 'bra', 'BraA05t20276Z' => 'bra', 'BraA09t40827Z' => 'bra', 'BraA10t43750Z' => 'bra', 'BraA10t43751Z' => 'bra', 'BraA10t45370Z' => 'bra', 'C02p00400' => 'bna', 'C02p12460' => 'bna', 'C03p13680' => 'bna', 'C04p10270' => 'bna', 'C04p17500' => 'bna', 'C08p37010' => 'bna', 'C09p51880' => 'bna', 'C09p51890' => 'bna', 'C09p74300' => 'bna', 'CAN.G179.26' => 'can', 'CAN.G3384.1' => 'can', 'CAN.G394.68' => 'can', 'CAN.G907.13' => 'can', 'CANSAT11G0012' => 'cansat', 'CANSAT25G1586' => 'cansat', 'CANSAT35G0735' => 'cansat', 'CANSAT54G0556' => 'cansat', 'CANSAT64G0356' => 'cansat', 'CANSAT78G2042' => 'cansat', 'CARHR125920' => 'chi', 'CARHR131910' => 'chi', 'CARHR172390' => 'chi', 'CARHR211140' => 'chi', 'CARHR285850' => 'chi', 'CARHR285860' => 'chi', 'Carub.0004s1347' => 'cru', 'Carub.0004s1960' => 'cru', 'Carub.0005s2880' => 'cru', 'Carub.0006s0107' => 'cru', 'Carub.0008s2015' => 'cru', 'Carub.0008s2016' => 'cru', 'Carub.0008s2017' => 'cru', 'Ca_01315_v3' => 'car', 'Ca_05063_v3' => 'car', 'Ca_10231_v3' => 'car', 'Ca_10913_v3' => 'car', 'Ca_19156_v3' => 'car', 'Ca_23644_v3' => 'car', 'Ca_26735_v3' => 'car', 'Cc01_g13130' => 'ccan', 'Cc02_g21690' => 'ccan', 'Cc03_g03600' => 'ccan', 'Cc06_g02510' => 'ccan', 'CDE02G1265' => 'cde', 'CDE05G0415' => 'cde', 'CDE08G1082' => 'cde', 'Cfa005780' => 'cfa', 'Cfa011522' => 'cfa', 'Cfa011523' => 'cfa', 'Cfa015627' => 'cfa', 'Cfa017359' => 'cfa', 'Ciclev10005687m.g' => 'ccl', 'Ciclev10012173m.g' => 'ccl', 'Ciclev10021621m.g' => 'ccl', 'Ciclev10028968m.g' => 'ccl', 'Ciclev10029907m.g' => 'ccl', 'CiPaw.01G164800' => 'cil', 'CiPaw.07G083700' => 'cil', 'CiPaw.07G127000' => 'cil', 'CiPaw.07G136900' => 'cil', 'CiPaw.08G081700' => 'cil', 'CiPaw.09G194600' => 'cil', 'CiPaw.10G146500' => 'cil', 'CiPaw.13G091500' => 'cil', 'CiPaw.13G091600' => 'cil', 'ClCG00G003390' => 'cla', 'ClCG01G007220' => 'cla', 'ClCG03G001370' => 'cla', 'ClCG04G008100' => 'cla', 'ClCG06G006110' => 'cla', 'ClCG06G006130' => 'cla', 'ClCG10G021210' => 'cla', 'COL.COLO4_07648' => 'col', 'COL.COLO4_07650' => 'col', 'COL.COLO4_07651' => 'col', 'COL.COLO4_14780' => 'col', 'COL.COLO4_18546' => 'col', 'COL.COLO4_18547' => 'col', 'COL.COLO4_23103' => 'col', 'COL.COLO4_30419' => 'col', 'COL.COLO4_34232' => 'col', 'Cpa.g.sc169.20' => 'cpa', 'Cpa.g.sc57.45' => 'cpa', 'Cpa.g.sc58.124' => 'cpa', 'Cpa.g.sc58.125' => 'cpa', 'Cpa.g.sc81.118' => 'cpa', 'Cpa.g.sc81.119' => 'cpa', 'Cre12.g524700' => 'cre', 'CsaV3_1G034430' => 'csa', 'CsaV3_1G034440' => 'csa', 'CsaV3_1G034450' => 'csa', 'CsaV3_3G034830' => 'csa', 'CsaV3_4G025090' => 'csa', 'CsaV3_5G018660' => 'csa', 'CsaV3_6G038160' => 'csa', 'CSS0003447' => 'camsi', 'CSS0017840' => 'camsi', 'CSS0019260' => 'camsi', 'CSS0040375' => 'camsi', 'CSS0042533' => 'camsi', 'DCAR_005960' => 'dca', 'DCAR_012104' => 'dca', 'DCAR_012105' => 'dca', 'DCAR_012293' => 'dca', 'DCAR_015632' => 'dca', 'DCAR_024602' => 'dca', 'DCAR_028752' => 'dca', 'Dinv06261' => 'din', 'Dinv13982' => 'din', 'Dinv17029' => 'din', 'Dinv18463' => 'din', 'Dinv33181' => 'din', 'Dinv35585' => 'din', 'Dinv37161' => 'din', 'Dinv42977' => 'din', 'Dinv43122' => 'din', 'Dinv44517' => 'din', 'Duzib093G0256' => 'dzi', 'Duzib106G1254' => 'dzi', 'Duzib128G1789' => 'dzi', 'Duzib133G0633' => 'dzi', 'Duzib138G0510' => 'dzi', 'Duzib150G1084' => 'dzi', 'Duzib168G0488' => 'dzi', 'Duzib168G1523' => 'dzi', 'Duzib170G0133' => 'dzi', 'ECA234G1433' => 'eca', 'ECA236G1432' => 'eca', 'ECA236G2256' => 'eca', 'ECA236G2365' => 'eca', 'ECA236G4830' => 'eca', 'ECA248G1505' => 'eca', 'EL10Ac3g06431' => 'bvu', 'EL10Ac5g12577' => 'bvu', 'EL10Ac6g13533' => 'bvu', 'EL10Ac7g16045' => 'bvu', 'Eucgr.A01281' => 'egr', 'Eucgr.B02326' => 'egr', 'Eucgr.H03532' => 'egr', 'Eucgr.K00553' => 'egr', 'Eucgr.K03116' => 'egr', 'FAN02G3963' => 'fan', 'FAN05G0438' => 'fan', 'FAN09G2434' => 'fan', 'FAN12G3984' => 'fan', 'FAN14G0798' => 'fan', 'FAN17G0652' => 'fan', 'FAN19G1988' => 'fan', 'FAN22G0632' => 'fan', 'FAN23G0387' => 'fan', 'FAN26G1323' => 'fan', 'FAN28G0666' => 'fan', 'FvH4_1g26080' => 'fve', 'FvH4_3g36780' => 'fve', 'FvH4_4g15270' => 'fve', 'FvH4_6g13490' => 'fve', 'Glyma.01G098700' => 'gma', 'Glyma.03G065900' => 'gma', 'Glyma.03G073754' => 'gma', 'Glyma.03G073758' => 'gma', 'Glyma.03G083200' => 'gma', 'Glyma.03G225500' => 'gma', 'Glyma.05G037766' => 'gma', 'Glyma.07G133500' => 'gma', 'Glyma.10G139400' => 'gma', 'Glyma.10G248900' => 'gma', 'Glyma.11G137800' => 'gma', 'Glyma.12G061300' => 'gma', 'Glyma.13G337900' => 'gma', 'Glyma.15G036600' => 'gma', 'Glyma.18G182800' => 'gma', 'Glyma.19G222500' => 'gma', 'Glyma.20G144800' => 'gma', 'Gohir.A01G222000' => 'ghi', 'Gohir.A03G044000' => 'ghi', 'Gohir.A03G044100' => 'ghi', 'Gohir.A04G083100' => 'ghi', 'Gohir.A07G127200' => 'ghi', 'Gohir.A07G132400' => 'ghi', 'Gohir.A08G000700' => 'ghi', 'Gohir.A11G327300' => 'ghi', 'Gohir.D01G211500' => 'ghi', 'Gohir.D03G123400' => 'ghi', 'Gohir.D03G123500' => 'ghi', 'Gohir.D04G121800' => 'ghi', 'Gohir.D07G131500' => 'ghi', 'Gohir.D07G136600' => 'ghi', 'Gohir.D08G011600' => 'ghi', 'Gohir.D11G346200' => 'ghi', 'Gorai.001G142800' => 'gra', 'Gorai.001G148700' => 'gra', 'Gorai.002G257300' => 'gra', 'Gorai.003G130000' => 'gra', 'Gorai.003G130100' => 'gra', 'Gorai.004G005300' => 'gra', 'Gorai.007G376500' => 'gra', 'Gorai.012G104700' => 'gra', 'GSVIVG01017946001' => 'vvi', 'GSVIVG01024928001' => 'vvi', 'GSVIVG01028227001' => 'vvi', 'GSVIVG01034151001' => 'vvi', 'HanXRQChr05g0135031' => 'han', 'HanXRQChr05g0135041' => 'han', 'HanXRQChr05g0140021' => 'han', 'HanXRQChr06g0178981' => 'han', 'HanXRQChr07g0188251' => 'han', 'HanXRQChr08g0235311' => 'han', 'HanXRQChr09g0271011' => 'han', 'HanXRQChr10g0293321' => 'han', 'HanXRQChr13g0388171' => 'han', 'Haze_00916' => 'cav', 'Haze_05063' => 'cav', 'Haze_20814' => 'cav', 'Haze_24128' => 'cav', 'Hma1.2p1_0745F.1_g212010' => 'hma', 'Hma1.2p1_0757F.1_g213260' => 'hma', 'Hma1.2p1_0936F.1_g238840' => 'hma', 'Hma1.2p1_1735F.1_g299890' => 'hma', 'Hma1.2p1_1861F.1_g305685' => 'hma', 'HPP92_003397' => 'vpl', 'HPP92_012597' => 'vpl', 'HPP92_015520' => 'vpl', 'HPP92_015539' => 'vpl', 'HPP92_020373' => 'vpl', 'Hund04938' => 'sun', 'Hund10677' => 'sun', 'Hund11033' => 'sun', 'Hund12155' => 'sun', 'Lalb_Chr01g0022551' => 'lal', 'Lalb_Chr03g0042341' => 'lal', 'Lalb_Chr07g0192931' => 'lal', 'Lalb_Chr12g0209551' => 'lal', 'Lalb_Chr19g0125251' => 'lal', 'Lalb_Chr19g0137891' => 'lal', 'Lalb_Chr21g0304641' => 'lal', 'Lalb_Chr21g0309881' => 'lal', 'Lj1A5T12' => 'lonja', 'Lj1C148G10' => 'lonja', 'Lj2A93T83' => 'lonja', 'Lj3A738G68' => 'lonja', 'Lj3C966T1' => 'lonja', 'Lj3g0018958' => 'lja', 'Lj3g0021831' => 'lja', 'Lj3g0025443' => 'lja', 'Lj4g0026809' => 'lja', 'Lj5g0012558' => 'lja', 'Lj5g0021586' => 'lja', 'Lsat_1_v5_gn_5_156840' => 'lsa', 'Lsat_1_v5_gn_8_73460' => 'lsa', 'Lsat_1_v5_gn_8_73481' => 'lsa', 'Lsat_1_v5_gn_9_31601' => 'lsa', 'Lsat_1_v5_gn_9_77320' => 'lsa', 'Manes.01G171300' => 'mes', 'Manes.01G171400' => 'mes', 'Manes.01G236100' => 'mes', 'Manes.02G130500' => 'mes', 'Manes.02G130600' => 'mes', 'Manes.03G180200' => 'mes', 'Manes.05G007000' => 'mes', 'Manes.08G084400' => 'mes', 'Manes.09G092600' => 'mes', 'Manes.15G027900' => 'mes', 'MBI04_g40948_MAGBIO' => 'mbi', 'MBI14_g12123_MAGBIO' => 'mbi', 'MBI18_g28915_MAGBIO' => 'mbi', 'MCO09G053' => 'mco', 'MCO11G782' => 'mco', 'MCO15G215' => 'mco', 'MD03G1088500' => 'mdo', 'MD03G1088600' => 'mdo', 'MD04G1130800' => 'mdo', 'MD09G1291700' => 'mdo', 'MD11G1097500' => 'mdo', 'MD11G1097600' => 'mdo', 'MD12G1143900' => 'mdo', 'MD13G1191400' => 'mdo', 'MD16G1191500' => 'mdo', 'Medtr1g085570' => 'mtr', 'Medtr1g104610' => 'mtr', 'Medtr2g097520' => 'mtr', 'Medtr4g021800' => 'mtr', 'Medtr4g021825' => 'mtr', 'Medtr4g064270' => 'mtr', 'Medtr4g064380' => 'mtr', 'Medtr7g062150' => 'mtr', 'MELO3C003138.2' => 'cme', 'MELO3C005187.2' => 'cme', 'MELO3C009252.2' => 'cme', 'MELO3C014481.2' => 'cme', 'MELO3C020616.2' => 'cme', 'MELO3C020617.2' => 'cme', 'MELO3C020618.2' => 'cme', 'Migut.G00328' => 'egut', 'Migut.J00320' => 'egut', 'Migut.L01000' => 'egut', 'Migut.L01953' => 'egut', 'MSTRG.10253' => 'ama', 'MSTRG.19077' => 'ama', 'MSTRG.26780' => 'ama', 'MSTRG.4023' => 'ama', 'MSTRG.5655' => 'ama', 'MSTRG.9992' => 'ama', 'Nitab4.5_0000043g0310' => 'nta', 'Nitab4.5_0000463g0080' => 'nta', 'Nitab4.5_0000705g0170' => 'nta', 'Nitab4.5_0001326g0060' => 'nta', 'Nitab4.5_0001628g0030' => 'nta', 'Nitab4.5_0002103g0110' => 'nta', 'Nitab4.5_0002946g0030' => 'nta', 'Nitab4.5_0004639g0030' => 'nta', 'Nn2g11149' => 'nnu', 'Nn2g13389' => 'nnu', 'Nn4g25326' => 'nnu', 'Nn4g26290' => 'nnu', 'Nn5g29865' => 'nnu', 'Oeu004163.1' => 'oeu', 'Oeu006901.1' => 'oeu', 'Oeu010096.1' => 'oeu', 'Oeu024340.1' => 'oeu', 'Oeu048369.1' => 'oeu', 'Os01g0973000' => 'osa', 'Os03g0273800' => 'osa', 'Os03g0701200' => 'osa', 'Os03g0834050' => 'osa', 'Os07g0634400' => 'osa', 'Peaxi162Scf00092g01414' => 'pax', 'Peaxi162Scf00165g00818' => 'pax', 'Peaxi162Scf00309g00516' => 'pax', 'Peaxi162Scf00774g00218' => 'pax', 'PGR004G1824' => 'pgr', 'PGR004G2606' => 'pgr', 'PGR031G2716' => 'pgr', 'PGR102G2460' => 'pgr', 'PGR142G2599' => 'pgr', 'PGSC0003DMG400000843' => 'stu', 'PGSC0003DMG400008829' => 'stu', 'PGSC0003DMG400030418' => 'stu', 'PGSC0003DMG400031834' => 'stu', 'PGSC0003DMG401028300' => 'stu', 'PGSC0003DMG402028300' => 'stu', 'Phvul.001G219300' => 'pvu', 'Phvul.007G056000' => 'pvu', 'Phvul.007G208000' => 'pvu', 'Phvul.008G119500' => 'pvu', 'Phvul.010G011200' => 'pvu', 'Phvul.010G014800' => 'pvu', 'Phvul.011G062900' => 'pvu', 'Phvul.L007043' => 'pvu', 'Potri.001G242300' => 'ptr', 'Potri.002G185300' => 'ptr', 'Potri.006G086900' => 'ptr', 'Potri.008G151700' => 'ptr', 'Potri.009G033500' => 'ptr', 'Potri.010G089300' => 'ptr', 'Potri.014G110800' => 'ptr', 'Pp3c27_8130' => 'ppa', 'Pp3c6_27410' => 'ppa', 'PRCOL_00001659' => 'pco', 'PRCOL_00001927' => 'pco', 'PRCOL_00003649' => 'pco', 'Prupe.1G011600' => 'ppe', 'Prupe.3G000800' => 'ppe', 'Prupe.3G001100' => 'ppe', 'Prupe.6G072700' => 'ppe', 'Prupe.6G072800' => 'ppe', 'Prupe.6G257300' => 'ppe', 'Prupe.8G033000' => 'ppe', 'Psat0s2633g0080' => 'psa', 'Psat0s3396g0080' => 'psa', 'Psat0s3396g0200' => 'psa', 'Psat3g139080' => 'psa', 'Psat5g285080' => 'psa', 'Psat6g157760' => 'psa', 'Psat6g208440' => 'psa', 'Psat7g215320' => 'psa', 'Psat7g215400' => 'psa', 'Psat7g235600' => 'psa', 'Psat7g235760' => 'psa', 'PSO063G4603' => 'pso', 'PSO210G0182' => 'pso', 'PSO210G0196' => 'pso', 'PSO339G0394' => 'pso', 'PSO339G4127' => 'pso', 'PSO513G0064' => 'pso', 'PSO761G0079' => 'pso', 'QL01p031003' => 'qlo', 'QL01p031078' => 'qlo', 'QL06p003004' => 'qlo', 'QL07p048731' => 'qlo', 'QL09p037427' => 'qlo', 'RcHm_v2.0_Chr3g0466361' => 'rch', 'RcHm_v2.0_Chr3g0485571' => 'rch', 'RcHm_v2.0_Chr4g0416551' => 'rch', 'RcHm_v2.0_Chr5g0065831' => 'rch', 'Rhsim01G0230500' => 'rsi', 'Rhsim05G0194000' => 'rsi', 'Rhsim08G0250400' => 'rsi', 'Sabra02G0131000' => 'sbr', 'Sabra06G0066300' => 'sbr', 'Sabra08G0115500' => 'sbr', 'Sabra09G0023900' => 'sbr', 'Sabra10G0054000' => 'sbr', 'Sabra14G0081500' => 'sbr', 'Sabra16G0147100' => 'sbr', 'SalBow2G2957' => 'sbo', 'SalBow4G3320' => 'sbo', 'SalBow8G1894' => 'sbo', 'Sc07g0007950' => 'sci', 'Sc12g0001360' => 'sci', 'Sc13g0004330' => 'sci', 'Sc20g0005010' => 'sci', 'Sed0000361' => 'sed', 'Sed0001706' => 'sed', 'Sed0002422' => 'sed', 'Sed0004029' => 'sed', 'Sed0004602' => 'sed', 'Sed0004943' => 'sed', 'Sed0008646' => 'sed', 'Sed0023313' => 'sed', 'Sed0024843' => 'sed', 'SEGI_00081' => 'sgi', 'SEGI_00947' => 'sgi', 'SEGI_04046' => 'sgi', 'SEGI_06880' => 'sgi', 'SEGI_09736' => 'sgi', 'SEGI_12741' => 'sgi', 'SEGI_14530' => 'sgi', 'SEGI_20705' => 'sgi', 'SEGI_26088' => 'sgi', 'SEGI_28323' => 'sgi', 'SEGI_33343' => 'sgi', 'SGA_v2.0_scaffold126G33775' => 'sas', 'SGA_v2.0_scaffold2G01337' => 'sas', 'SGA_v2.0_scaffold38G15006' => 'sas', 'SGA_v2.0_scaffold39G15264' => 'sas', 'SGA_v2.0_scaffold453G51880' => 'sas', 'SHI12696' => 'shi', 'SMO367G1096' => 'smo', 'Solyc01g068630.3' => 'sly', 'Solyc05g011880.3' => 'sly', 'Solyc06g076300.3' => 'sly', 'Solyc09g010940.4' => 'sly', 'Solyc09g075890.3' => 'sly', 'Sopen01g030560' => 'spe', 'Sopen05g006630' => 'spe', 'Sopen06g032720' => 'spe', 'Sopen09g005660' => 'spe', 'Sopen09g030690' => 'spe', 'Sp4g14540' => 'spa', 'Sp4g20030' => 'spa', 'Sp5g01320' => 'spa', 'Sp6g21170' => 'spa', 'Sp6g21180' => 'spa', 'Sp6g21190' => 'spa', 'Sp6g40220' => 'spa', 'TAR362G0122' => 'tar', 'TAR362G1338' => 'tar', 'TAR369G0590' => 'tar', 'TAR371G0824' => 'tar', 'TAR622G1429' => 'tar', 'TAR623G0734' => 'tar', 'TAR625G0441' => 'tar', 'TAR629G0976' => 'tar', 'TAR633G1195' => 'tar', 'TAR636G2660' => 'tar', 'THA.LOC104799440' => 'tha', 'THA.LOC104800966' => 'tha', 'THA.LOC104806559' => 'tha', 'THA.LOC104810765' => 'tha', 'THA.LOC104816266' => 'tha', 'THA.LOC104817419' => 'tha', 'THA.LOC104827021' => 'tha', 'Thecc.01G327400' => 'tca', 'Thecc.04G229200' => 'tca', 'Thecc.05G037400' => 'tca', 'Thecc.09G318600' => 'tca', 'Thecc.09G318700' => 'tca', 'Thhalv10006238m.g' => 'esa', 'Thhalv10014321m.g' => 'esa', 'Thhalv10014335m.g' => 'esa', 'Thhalv10015826m.g' => 'esa', 'Thhalv10017107m.g' => 'esa', 'Thhalv10017180m.g' => 'esa', 'Thhalv10029339m.g' => 'esa', 'TPR.G1699' => 'tpr', 'TPR.G23609' => 'tpr', 'TPR.G3081' => 'tpr', 'TPR.G40397' => 'tpr', 'TPR.G5522' => 'tpr', 'TPR.G5618' => 'tpr', 'TPR.G5626' => 'tpr', 'TWI09G1632' => 'twi', 'TWI23G1230' => 'twi', 'TWI53G1064' => 'twi', 'TWI59G0751' => 'twi', 'TWI74G0947' => 'twi', 'TWI77G0337' => 'twi', 'TWI79G1254' => 'twi', 'unitig_0.g2341' => 'ugi', 'unitig_26.g10006' => 'ugi', 'unitig_26.g10008' => 'ugi', 'unitig_26.g9192' => 'ugi', 'vmacro14547' => 'vma', 'vmacro15333' => 'vma', 'vmacro18743' => 'vma', 'vmacro20166' => 'vma', 'VMungo0331G0523' => 'vmu', 'VMungo0331G1202' => 'vmu', 'VMungo0720G1228' => 'vmu', 'VMungo0720G1514' => 'vmu', 'VMungo1080G0169' => 'vmu', 'VMungo1127G1475' => 'vmu', 'VMungo1383G1208' => 'vmu', 'VMungo1383G1698' => 'vmu', 'Zm00001eb012270' => 'zma', 'Zm00001eb054100' => 'zma', 'Zm00001eb063350' => 'zma', 'Zm00001eb328560' => 'zma', 'Zm00001eb342820' => 'zma', 'Zm00001eb362210' => 'zma', 'Zm00001eb397730' => 'zma', 'Zm00001eb399750' => 'zma' ) $gf_id = 'HOM05D000959' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000959' ) $data_identifier = 'HOM05D000959' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 5, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 5, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 10, 'mbi' => (int) 3, 'mco' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 2, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 3, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 11, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399750' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000959', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '622', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p07100' => 'bna', 'A03p11720' => 'bna', 'A05p08300' => 'bna', 'A05p13380' => 'bna', 'A09p54130' => 'bna', 'A10p16690' => 'bna', 'A10p16700' => 'bna', 'A10p33390' => 'bna', 'Aa31LG10G16020' => 'aar', 'Aa31LG1G11810' => 'aar', 'Aa31LG1G11830' => 'aar', 'Aa31LG1G22510' => 'aar', 'Aa31LG5G4890' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5793' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2310' => 'aag', 'Actinidia08499' => 'ach', 'Actinidia11262' => 'ach', 'Actinidia23926' => 'ach', 'Actinidia34420' => 'ach', 'Actinidia36970' => 'ach', 'Ah.02g111220' => 'amhyb', 'Ah.15g097750' => 'amhyb', 'AL4G27500' => 'aly', 'AL6G11470' => 'aly', 'AL8G35950' => 'aly', 'AL8G35960' => 'aly', 'AL8G35970' => 'aly', 'Aqoxy1G00912' => 'aox', 'Aqoxy2G02253' => 'aox', 'Aqoxy2G02411' => 'aox', 'Aqoxy5G00485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BZ66YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K8ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM4FUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6BF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HFV7XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25JBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0YNNV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MAKK6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P70IT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP2Z6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V61LZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YWP64R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3S9AI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7PGHH' => 'arhy', 'AT2G32150' => 'ath', 'AT3G62040' => 'ath', 'AT5G02230' => 'ath', 'AT5G59480' => 'ath', 'AT5G59490' => 'ath', 'ATR0332G060' => 'atr', 'ATR0559G190' => 'atr', 'ATR0693G294' => 'atr', 'Atru.chr3.3975' => 'acertr', 'Atru.chr3.3976' => 'acertr', 'Atru.chr3.3977' => 'acertr', 'Atru.chr4.2498' => 'acertr', 'Atru.chr5.838' => 'acertr', 'Atru.chr8.1990' => 'acertr', 'Atru.chr8.1991' => 'acertr', 'Atru.chr8.1992' => 'acertr', 'AUR62001759' => 'cqu', 'AUR62009545' => 'cqu', 'AUR62010474' => 'cqu', 'AUR62025820' => 'cqu', 'AUR62030422' => 'cqu', 'AUR62033605' => 'cqu', 'AUR62038615' => 'cqu', 'AUR62041347' => 'cqu', 'BcaB01g04574' => 'bca', 'BcaB02g09263' => 'bca', 'BcaB02g10453' => 'bca', 'BcaB05g22513' => 'bca', 'BcaB08g36253' => 'bca', 'BcaB08g36254' => 'bca', 'BcaC01g06519' => 'bca', 'BcaC02g11889' => 'bca', 'BcaC03g14010' => 'bca', 'BcaC03g18439' => 'bca', 'BcaC04g19765' => 'bca', 'BcaC09g48432' => 'bca', 'BcaNung07302' => 'bca', 'BolC2t06040H' => 'bol', 'BolC2t07346H' => 'bol', 'BolC3t13817H' => 'bol', 'BolC4t22625H' => 'bol', 'BolC4t23297H' => 'bol', 'BolC8t51278H' => 'bol', 'BolC9t58050H' => 'bol', 'BolC9t58051H' => 'bol', 'BolC9t60163H' => 'bol', 'BraA02t04712Z' => 'bra', 'BraA02t05791Z' => 'bra', 'BraA03t10483Z' => 'bra', 'BraA05t19795Z' => 'bra', 'BraA05t20276Z' => 'bra', 'BraA09t40827Z' => 'bra', 'BraA10t43750Z' => 'bra', 'BraA10t43751Z' => 'bra', 'BraA10t45370Z' => 'bra', 'C02p00400' => 'bna', 'C02p12460' => 'bna', 'C03p13680' => 'bna', 'C04p10270' => 'bna', 'C04p17500' => 'bna', 'C08p37010' => 'bna', 'C09p51880' => 'bna', 'C09p51890' => 'bna', 'C09p74300' => 'bna', 'CAN.G179.26' => 'can', 'CAN.G3384.1' => 'can', 'CAN.G394.68' => 'can', 'CAN.G907.13' => 'can', 'CANSAT11G0012' => 'cansat', 'CANSAT25G1586' => 'cansat', 'CANSAT35G0735' => 'cansat', 'CANSAT54G0556' => 'cansat', 'CANSAT64G0356' => 'cansat', 'CANSAT78G2042' => 'cansat', 'CARHR125920' => 'chi', 'CARHR131910' => 'chi', 'CARHR172390' => 'chi', 'CARHR211140' => 'chi', 'CARHR285850' => 'chi', 'CARHR285860' => 'chi', 'Carub.0004s1347' => 'cru', 'Carub.0004s1960' => 'cru', 'Carub.0005s2880' => 'cru', 'Carub.0006s0107' => 'cru', 'Carub.0008s2015' => 'cru', 'Carub.0008s2016' => 'cru', 'Carub.0008s2017' => 'cru', 'Ca_01315_v3' => 'car', 'Ca_05063_v3' => 'car', 'Ca_10231_v3' => 'car', 'Ca_10913_v3' => 'car', 'Ca_19156_v3' => 'car', 'Ca_23644_v3' => 'car', 'Ca_26735_v3' => 'car', 'Cc01_g13130' => 'ccan', 'Cc02_g21690' => 'ccan', 'Cc03_g03600' => 'ccan', 'Cc06_g02510' => 'ccan', 'CDE02G1265' => 'cde', 'CDE05G0415' => 'cde', 'CDE08G1082' => 'cde', 'Cfa005780' => 'cfa', 'Cfa011522' => 'cfa', 'Cfa011523' => 'cfa', 'Cfa015627' => 'cfa', 'Cfa017359' => 'cfa', 'Ciclev10005687m.g' => 'ccl', 'Ciclev10012173m.g' => 'ccl', 'Ciclev10021621m.g' => 'ccl', 'Ciclev10028968m.g' => 'ccl', 'Ciclev10029907m.g' => 'ccl', 'CiPaw.01G164800' => 'cil', 'CiPaw.07G083700' => 'cil', 'CiPaw.07G127000' => 'cil', 'CiPaw.07G136900' => 'cil', 'CiPaw.08G081700' => 'cil', 'CiPaw.09G194600' => 'cil', 'CiPaw.10G146500' => 'cil', 'CiPaw.13G091500' => 'cil', 'CiPaw.13G091600' => 'cil', 'ClCG00G003390' => 'cla', 'ClCG01G007220' => 'cla', 'ClCG03G001370' => 'cla', 'ClCG04G008100' => 'cla', 'ClCG06G006110' => 'cla', 'ClCG06G006130' => 'cla', 'ClCG10G021210' => 'cla', 'COL.COLO4_07648' => 'col', 'COL.COLO4_07650' => 'col', 'COL.COLO4_07651' => 'col', 'COL.COLO4_14780' => 'col', 'COL.COLO4_18546' => 'col', 'COL.COLO4_18547' => 'col', 'COL.COLO4_23103' => 'col', 'COL.COLO4_30419' => 'col', 'COL.COLO4_34232' => 'col', 'Cpa.g.sc169.20' => 'cpa', 'Cpa.g.sc57.45' => 'cpa', 'Cpa.g.sc58.124' => 'cpa', 'Cpa.g.sc58.125' => 'cpa', 'Cpa.g.sc81.118' => 'cpa', 'Cpa.g.sc81.119' => 'cpa', 'Cre12.g524700' => 'cre', 'CsaV3_1G034430' => 'csa', 'CsaV3_1G034440' => 'csa', 'CsaV3_1G034450' => 'csa', 'CsaV3_3G034830' => 'csa', 'CsaV3_4G025090' => 'csa', 'CsaV3_5G018660' => 'csa', 'CsaV3_6G038160' => 'csa', 'CSS0003447' => 'camsi', 'CSS0017840' => 'camsi', 'CSS0019260' => 'camsi', 'CSS0040375' => 'camsi', 'CSS0042533' => 'camsi', 'DCAR_005960' => 'dca', 'DCAR_012104' => 'dca', 'DCAR_012105' => 'dca', 'DCAR_012293' => 'dca', 'DCAR_015632' => 'dca', 'DCAR_024602' => 'dca', 'DCAR_028752' => 'dca', 'Dinv06261' => 'din', 'Dinv13982' => 'din', 'Dinv17029' => 'din', 'Dinv18463' => 'din', 'Dinv33181' => 'din', 'Dinv35585' => 'din', 'Dinv37161' => 'din', 'Dinv42977' => 'din', 'Dinv43122' => 'din', 'Dinv44517' => 'din', 'Duzib093G0256' => 'dzi', 'Duzib106G1254' => 'dzi', 'Duzib128G1789' => 'dzi', 'Duzib133G0633' => 'dzi', 'Duzib138G0510' => 'dzi', 'Duzib150G1084' => 'dzi', 'Duzib168G0488' => 'dzi', 'Duzib168G1523' => 'dzi', 'Duzib170G0133' => 'dzi', 'ECA234G1433' => 'eca', 'ECA236G1432' => 'eca', 'ECA236G2256' => 'eca', 'ECA236G2365' => 'eca', 'ECA236G4830' => 'eca', 'ECA248G1505' => 'eca', 'EL10Ac3g06431' => 'bvu', 'EL10Ac5g12577' => 'bvu', 'EL10Ac6g13533' => 'bvu', 'EL10Ac7g16045' => 'bvu', 'Eucgr.A01281' => 'egr', 'Eucgr.B02326' => 'egr', 'Eucgr.H03532' => 'egr', 'Eucgr.K00553' => 'egr', 'Eucgr.K03116' => 'egr', 'FAN02G3963' => 'fan', 'FAN05G0438' => 'fan', 'FAN09G2434' => 'fan', 'FAN12G3984' => 'fan', 'FAN14G0798' => 'fan', 'FAN17G0652' => 'fan', 'FAN19G1988' => 'fan', 'FAN22G0632' => 'fan', 'FAN23G0387' => 'fan', 'FAN26G1323' => 'fan', 'FAN28G0666' => 'fan', 'FvH4_1g26080' => 'fve', 'FvH4_3g36780' => 'fve', 'FvH4_4g15270' => 'fve', 'FvH4_6g13490' => 'fve', 'Glyma.01G098700' => 'gma', 'Glyma.03G065900' => 'gma', 'Glyma.03G073754' => 'gma', 'Glyma.03G073758' => 'gma', 'Glyma.03G083200' => 'gma', 'Glyma.03G225500' => 'gma', 'Glyma.05G037766' => 'gma', 'Glyma.07G133500' => 'gma', 'Glyma.10G139400' => 'gma', 'Glyma.10G248900' => 'gma', 'Glyma.11G137800' => 'gma', 'Glyma.12G061300' => 'gma', 'Glyma.13G337900' => 'gma', 'Glyma.15G036600' => 'gma', 'Glyma.18G182800' => 'gma', 'Glyma.19G222500' => 'gma', 'Glyma.20G144800' => 'gma', 'Gohir.A01G222000' => 'ghi', 'Gohir.A03G044000' => 'ghi', 'Gohir.A03G044100' => 'ghi', 'Gohir.A04G083100' => 'ghi', 'Gohir.A07G127200' => 'ghi', 'Gohir.A07G132400' => 'ghi', 'Gohir.A08G000700' => 'ghi', 'Gohir.A11G327300' => 'ghi', 'Gohir.D01G211500' => 'ghi', 'Gohir.D03G123400' => 'ghi', 'Gohir.D03G123500' => 'ghi', 'Gohir.D04G121800' => 'ghi', 'Gohir.D07G131500' => 'ghi', 'Gohir.D07G136600' => 'ghi', 'Gohir.D08G011600' => 'ghi', 'Gohir.D11G346200' => 'ghi', 'Gorai.001G142800' => 'gra', 'Gorai.001G148700' => 'gra', 'Gorai.002G257300' => 'gra', 'Gorai.003G130000' => 'gra', 'Gorai.003G130100' => 'gra', 'Gorai.004G005300' => 'gra', 'Gorai.007G376500' => 'gra', 'Gorai.012G104700' => 'gra', 'GSVIVG01017946001' => 'vvi', 'GSVIVG01024928001' => 'vvi', 'GSVIVG01028227001' => 'vvi', 'GSVIVG01034151001' => 'vvi', 'HanXRQChr05g0135031' => 'han', 'HanXRQChr05g0135041' => 'han', 'HanXRQChr05g0140021' => 'han', 'HanXRQChr06g0178981' => 'han', 'HanXRQChr07g0188251' => 'han', 'HanXRQChr08g0235311' => 'han', 'HanXRQChr09g0271011' => 'han', 'HanXRQChr10g0293321' => 'han', 'HanXRQChr13g0388171' => 'han', 'Haze_00916' => 'cav', 'Haze_05063' => 'cav', 'Haze_20814' => 'cav', 'Haze_24128' => 'cav', 'Hma1.2p1_0745F.1_g212010' => 'hma', 'Hma1.2p1_0757F.1_g213260' => 'hma', 'Hma1.2p1_0936F.1_g238840' => 'hma', 'Hma1.2p1_1735F.1_g299890' => 'hma', 'Hma1.2p1_1861F.1_g305685' => 'hma', 'HPP92_003397' => 'vpl', 'HPP92_012597' => 'vpl', 'HPP92_015520' => 'vpl', 'HPP92_015539' => 'vpl', 'HPP92_020373' => 'vpl', 'Hund04938' => 'sun', 'Hund10677' => 'sun', 'Hund11033' => 'sun', 'Hund12155' => 'sun', 'Lalb_Chr01g0022551' => 'lal', 'Lalb_Chr03g0042341' => 'lal', 'Lalb_Chr07g0192931' => 'lal', 'Lalb_Chr12g0209551' => 'lal', 'Lalb_Chr19g0125251' => 'lal', 'Lalb_Chr19g0137891' => 'lal', 'Lalb_Chr21g0304641' => 'lal', 'Lalb_Chr21g0309881' => 'lal', 'Lj1A5T12' => 'lonja', 'Lj1C148G10' => 'lonja', 'Lj2A93T83' => 'lonja', 'Lj3A738G68' => 'lonja', 'Lj3C966T1' => 'lonja', 'Lj3g0018958' => 'lja', 'Lj3g0021831' => 'lja', 'Lj3g0025443' => 'lja', 'Lj4g0026809' => 'lja', 'Lj5g0012558' => 'lja', 'Lj5g0021586' => 'lja', 'Lsat_1_v5_gn_5_156840' => 'lsa', 'Lsat_1_v5_gn_8_73460' => 'lsa', 'Lsat_1_v5_gn_8_73481' => 'lsa', 'Lsat_1_v5_gn_9_31601' => 'lsa', 'Lsat_1_v5_gn_9_77320' => 'lsa', 'Manes.01G171300' => 'mes', 'Manes.01G171400' => 'mes', 'Manes.01G236100' => 'mes', 'Manes.02G130500' => 'mes', 'Manes.02G130600' => 'mes', 'Manes.03G180200' => 'mes', 'Manes.05G007000' => 'mes', 'Manes.08G084400' => 'mes', 'Manes.09G092600' => 'mes', 'Manes.15G027900' => 'mes', 'MBI04_g40948_MAGBIO' => 'mbi', 'MBI14_g12123_MAGBIO' => 'mbi', 'MBI18_g28915_MAGBIO' => 'mbi', 'MCO09G053' => 'mco', 'MCO11G782' => 'mco', 'MCO15G215' => 'mco', 'MD03G1088500' => 'mdo', 'MD03G1088600' => 'mdo', 'MD04G1130800' => 'mdo', 'MD09G1291700' => 'mdo', 'MD11G1097500' => 'mdo', 'MD11G1097600' => 'mdo', 'MD12G1143900' => 'mdo', 'MD13G1191400' => 'mdo', 'MD16G1191500' => 'mdo', 'Medtr1g085570' => 'mtr', 'Medtr1g104610' => 'mtr', 'Medtr2g097520' => 'mtr', 'Medtr4g021800' => 'mtr', 'Medtr4g021825' => 'mtr', 'Medtr4g064270' => 'mtr', 'Medtr4g064380' => 'mtr', 'Medtr7g062150' => 'mtr', 'MELO3C003138.2' => 'cme', 'MELO3C005187.2' => 'cme', 'MELO3C009252.2' => 'cme', 'MELO3C014481.2' => 'cme', 'MELO3C020616.2' => 'cme', 'MELO3C020617.2' => 'cme', 'MELO3C020618.2' => 'cme', 'Migut.G00328' => 'egut', 'Migut.J00320' => 'egut', 'Migut.L01000' => 'egut', 'Migut.L01953' => 'egut', 'MSTRG.10253' => 'ama', 'MSTRG.19077' => 'ama', 'MSTRG.26780' => 'ama', 'MSTRG.4023' => 'ama', 'MSTRG.5655' => 'ama', 'MSTRG.9992' => 'ama', 'Nitab4.5_0000043g0310' => 'nta', 'Nitab4.5_0000463g0080' => 'nta', 'Nitab4.5_0000705g0170' => 'nta', 'Nitab4.5_0001326g0060' => 'nta', 'Nitab4.5_0001628g0030' => 'nta', 'Nitab4.5_0002103g0110' => 'nta', 'Nitab4.5_0002946g0030' => 'nta', 'Nitab4.5_0004639g0030' => 'nta', 'Nn2g11149' => 'nnu', 'Nn2g13389' => 'nnu', 'Nn4g25326' => 'nnu', 'Nn4g26290' => 'nnu', 'Nn5g29865' => 'nnu', 'Oeu004163.1' => 'oeu', 'Oeu006901.1' => 'oeu', 'Oeu010096.1' => 'oeu', 'Oeu024340.1' => 'oeu', 'Oeu048369.1' => 'oeu', 'Os01g0973000' => 'osa', 'Os03g0273800' => 'osa', 'Os03g0701200' => 'osa', 'Os03g0834050' => 'osa', 'Os07g0634400' => 'osa', 'Peaxi162Scf00092g01414' => 'pax', 'Peaxi162Scf00165g00818' => 'pax', 'Peaxi162Scf00309g00516' => 'pax', 'Peaxi162Scf00774g00218' => 'pax', 'PGR004G1824' => 'pgr', 'PGR004G2606' => 'pgr', 'PGR031G2716' => 'pgr', 'PGR102G2460' => 'pgr', 'PGR142G2599' => 'pgr', 'PGSC0003DMG400000843' => 'stu', 'PGSC0003DMG400008829' => 'stu', 'PGSC0003DMG400030418' => 'stu', 'PGSC0003DMG400031834' => 'stu', 'PGSC0003DMG401028300' => 'stu', 'PGSC0003DMG402028300' => 'stu', 'Phvul.001G219300' => 'pvu', 'Phvul.007G056000' => 'pvu', 'Phvul.007G208000' => 'pvu', 'Phvul.008G119500' => 'pvu', 'Phvul.010G011200' => 'pvu', 'Phvul.010G014800' => 'pvu', 'Phvul.011G062900' => 'pvu', 'Phvul.L007043' => 'pvu', 'Potri.001G242300' => 'ptr', 'Potri.002G185300' => 'ptr', 'Potri.006G086900' => 'ptr', 'Potri.008G151700' => 'ptr', 'Potri.009G033500' => 'ptr', 'Potri.010G089300' => 'ptr', 'Potri.014G110800' => 'ptr', 'Pp3c27_8130' => 'ppa', 'Pp3c6_27410' => 'ppa', 'PRCOL_00001659' => 'pco', 'PRCOL_00001927' => 'pco', 'PRCOL_00003649' => 'pco', 'Prupe.1G011600' => 'ppe', 'Prupe.3G000800' => 'ppe', 'Prupe.3G001100' => 'ppe', 'Prupe.6G072700' => 'ppe', 'Prupe.6G072800' => 'ppe', 'Prupe.6G257300' => 'ppe', 'Prupe.8G033000' => 'ppe', 'Psat0s2633g0080' => 'psa', 'Psat0s3396g0080' => 'psa', 'Psat0s3396g0200' => 'psa', 'Psat3g139080' => 'psa', 'Psat5g285080' => 'psa', 'Psat6g157760' => 'psa', 'Psat6g208440' => 'psa', 'Psat7g215320' => 'psa', 'Psat7g215400' => 'psa', 'Psat7g235600' => 'psa', 'Psat7g235760' => 'psa', 'PSO063G4603' => 'pso', 'PSO210G0182' => 'pso', 'PSO210G0196' => 'pso', 'PSO339G0394' => 'pso', 'PSO339G4127' => 'pso', 'PSO513G0064' => 'pso', 'PSO761G0079' => 'pso', 'QL01p031003' => 'qlo', 'QL01p031078' => 'qlo', 'QL06p003004' => 'qlo', 'QL07p048731' => 'qlo', 'QL09p037427' => 'qlo', 'RcHm_v2.0_Chr3g0466361' => 'rch', 'RcHm_v2.0_Chr3g0485571' => 'rch', 'RcHm_v2.0_Chr4g0416551' => 'rch', 'RcHm_v2.0_Chr5g0065831' => 'rch', 'Rhsim01G0230500' => 'rsi', 'Rhsim05G0194000' => 'rsi', 'Rhsim08G0250400' => 'rsi', 'Sabra02G0131000' => 'sbr', 'Sabra06G0066300' => 'sbr', 'Sabra08G0115500' => 'sbr', 'Sabra09G0023900' => 'sbr', 'Sabra10G0054000' => 'sbr', 'Sabra14G0081500' => 'sbr', 'Sabra16G0147100' => 'sbr', 'SalBow2G2957' => 'sbo', 'SalBow4G3320' => 'sbo', 'SalBow8G1894' => 'sbo', 'Sc07g0007950' => 'sci', 'Sc12g0001360' => 'sci', 'Sc13g0004330' => 'sci', 'Sc20g0005010' => 'sci', 'Sed0000361' => 'sed', 'Sed0001706' => 'sed', 'Sed0002422' => 'sed', 'Sed0004029' => 'sed', 'Sed0004602' => 'sed', 'Sed0004943' => 'sed', 'Sed0008646' => 'sed', 'Sed0023313' => 'sed', 'Sed0024843' => 'sed', 'SEGI_00081' => 'sgi', 'SEGI_00947' => 'sgi', 'SEGI_04046' => 'sgi', 'SEGI_06880' => 'sgi', 'SEGI_09736' => 'sgi', 'SEGI_12741' => 'sgi', 'SEGI_14530' => 'sgi', 'SEGI_20705' => 'sgi', 'SEGI_26088' => 'sgi', 'SEGI_28323' => 'sgi', 'SEGI_33343' => 'sgi', 'SGA_v2.0_scaffold126G33775' => 'sas', 'SGA_v2.0_scaffold2G01337' => 'sas', 'SGA_v2.0_scaffold38G15006' => 'sas', 'SGA_v2.0_scaffold39G15264' => 'sas', 'SGA_v2.0_scaffold453G51880' => 'sas', 'SHI12696' => 'shi', 'SMO367G1096' => 'smo', 'Solyc01g068630.3' => 'sly', 'Solyc05g011880.3' => 'sly', 'Solyc06g076300.3' => 'sly', 'Solyc09g010940.4' => 'sly', 'Solyc09g075890.3' => 'sly', 'Sopen01g030560' => 'spe', 'Sopen05g006630' => 'spe', 'Sopen06g032720' => 'spe', 'Sopen09g005660' => 'spe', 'Sopen09g030690' => 'spe', 'Sp4g14540' => 'spa', 'Sp4g20030' => 'spa', 'Sp5g01320' => 'spa', 'Sp6g21170' => 'spa', 'Sp6g21180' => 'spa', 'Sp6g21190' => 'spa', 'Sp6g40220' => 'spa', 'TAR362G0122' => 'tar', 'TAR362G1338' => 'tar', 'TAR369G0590' => 'tar', 'TAR371G0824' => 'tar', 'TAR622G1429' => 'tar', 'TAR623G0734' => 'tar', 'TAR625G0441' => 'tar', 'TAR629G0976' => 'tar', 'TAR633G1195' => 'tar', 'TAR636G2660' => 'tar', 'THA.LOC104799440' => 'tha', 'THA.LOC104800966' => 'tha', 'THA.LOC104806559' => 'tha', 'THA.LOC104810765' => 'tha', 'THA.LOC104816266' => 'tha', 'THA.LOC104817419' => 'tha', 'THA.LOC104827021' => 'tha', 'Thecc.01G327400' => 'tca', 'Thecc.04G229200' => 'tca', 'Thecc.05G037400' => 'tca', 'Thecc.09G318600' => 'tca', 'Thecc.09G318700' => 'tca', 'Thhalv10006238m.g' => 'esa', 'Thhalv10014321m.g' => 'esa', 'Thhalv10014335m.g' => 'esa', 'Thhalv10015826m.g' => 'esa', 'Thhalv10017107m.g' => 'esa', 'Thhalv10017180m.g' => 'esa', 'Thhalv10029339m.g' => 'esa', 'TPR.G1699' => 'tpr', 'TPR.G23609' => 'tpr', 'TPR.G3081' => 'tpr', 'TPR.G40397' => 'tpr', 'TPR.G5522' => 'tpr', 'TPR.G5618' => 'tpr', 'TPR.G5626' => 'tpr', 'TWI09G1632' => 'twi', 'TWI23G1230' => 'twi', 'TWI53G1064' => 'twi', 'TWI59G0751' => 'twi', 'TWI74G0947' => 'twi', 'TWI77G0337' => 'twi', 'TWI79G1254' => 'twi', 'unitig_0.g2341' => 'ugi', 'unitig_26.g10006' => 'ugi', 'unitig_26.g10008' => 'ugi', 'unitig_26.g9192' => 'ugi', 'vmacro14547' => 'vma', 'vmacro15333' => 'vma', 'vmacro18743' => 'vma', 'vmacro20166' => 'vma', 'VMungo0331G0523' => 'vmu', 'VMungo0331G1202' => 'vmu', 'VMungo0720G1228' => 'vmu', 'VMungo0720G1514' => 'vmu', 'VMungo1080G0169' => 'vmu', 'VMungo1127G1475' => 'vmu', 'VMungo1383G1208' => 'vmu', 'VMungo1383G1698' => 'vmu', 'Zm00001eb012270' => 'zma', 'Zm00001eb054100' => 'zma', 'Zm00001eb063350' => 'zma', 'Zm00001eb328560' => 'zma', 'Zm00001eb342820' => 'zma', 'Zm00001eb362210' => 'zma', 'Zm00001eb397730' => 'zma', 'Zm00001eb399750' => 'zma' ), 'gf_id' => 'HOM05D000959', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000959' ), 'data_identifier' => 'HOM05D000959', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000959', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '622', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p07100' => 'bna', 'A03p11720' => 'bna', 'A05p08300' => 'bna', 'A05p13380' => 'bna', 'A09p54130' => 'bna', 'A10p16690' => 'bna', 'A10p16700' => 'bna', 'A10p33390' => 'bna', 'Aa31LG10G16020' => 'aar', 'Aa31LG1G11810' => 'aar', 'Aa31LG1G11830' => 'aar', 'Aa31LG1G22510' => 'aar', 'Aa31LG5G4890' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5793' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2310' => 'aag', 'Actinidia08499' => 'ach', 'Actinidia11262' => 'ach', 'Actinidia23926' => 'ach', 'Actinidia34420' => 'ach', 'Actinidia36970' => 'ach', 'Ah.02g111220' => 'amhyb', 'Ah.15g097750' => 'amhyb', 'AL4G27500' => 'aly', 'AL6G11470' => 'aly', 'AL8G35950' => 'aly', 'AL8G35960' => 'aly', 'AL8G35970' => 'aly', 'Aqoxy1G00912' => 'aox', 'Aqoxy2G02253' => 'aox', 'Aqoxy2G02411' => 'aox', 'Aqoxy5G00485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BZ66YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K8ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM4FUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6BF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HFV7XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25JBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0YNNV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MAKK6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P70IT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP2Z6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V61LZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YWP64R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3S9AI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7PGHH' => 'arhy', 'AT2G32150' => 'ath', 'AT3G62040' => 'ath', 'AT5G02230' => 'ath', 'AT5G59480' => 'ath', 'AT5G59490' => 'ath', 'ATR0332G060' => 'atr', 'ATR0559G190' => 'atr', 'ATR0693G294' => 'atr', 'Atru.chr3.3975' => 'acertr', 'Atru.chr3.3976' => 'acertr', 'Atru.chr3.3977' => 'acertr', 'Atru.chr4.2498' => 'acertr', 'Atru.chr5.838' => 'acertr', 'Atru.chr8.1990' => 'acertr', 'Atru.chr8.1991' => 'acertr', 'Atru.chr8.1992' => 'acertr', 'AUR62001759' => 'cqu', 'AUR62009545' => 'cqu', 'AUR62010474' => 'cqu', 'AUR62025820' => 'cqu', 'AUR62030422' => 'cqu', 'AUR62033605' => 'cqu', 'AUR62038615' => 'cqu', 'AUR62041347' => 'cqu', 'BcaB01g04574' => 'bca', 'BcaB02g09263' => 'bca', 'BcaB02g10453' => 'bca', 'BcaB05g22513' => 'bca', 'BcaB08g36253' => 'bca', 'BcaB08g36254' => 'bca', 'BcaC01g06519' => 'bca', 'BcaC02g11889' => 'bca', 'BcaC03g14010' => 'bca', 'BcaC03g18439' => 'bca', 'BcaC04g19765' => 'bca', 'BcaC09g48432' => 'bca', 'BcaNung07302' => 'bca', 'BolC2t06040H' => 'bol', 'BolC2t07346H' => 'bol', 'BolC3t13817H' => 'bol', 'BolC4t22625H' => 'bol', 'BolC4t23297H' => 'bol', 'BolC8t51278H' => 'bol', 'BolC9t58050H' => 'bol', 'BolC9t58051H' => 'bol', 'BolC9t60163H' => 'bol', 'BraA02t04712Z' => 'bra', 'BraA02t05791Z' => 'bra', 'BraA03t10483Z' => 'bra', 'BraA05t19795Z' => 'bra', 'BraA05t20276Z' => 'bra', 'BraA09t40827Z' => 'bra', 'BraA10t43750Z' => 'bra', 'BraA10t43751Z' => 'bra', 'BraA10t45370Z' => 'bra', 'C02p00400' => 'bna', 'C02p12460' => 'bna', 'C03p13680' => 'bna', 'C04p10270' => 'bna', 'C04p17500' => 'bna', 'C08p37010' => 'bna', 'C09p51880' => 'bna', 'C09p51890' => 'bna', 'C09p74300' => 'bna', 'CAN.G179.26' => 'can', 'CAN.G3384.1' => 'can', 'CAN.G394.68' => 'can', 'CAN.G907.13' => 'can', 'CANSAT11G0012' => 'cansat', 'CANSAT25G1586' => 'cansat', 'CANSAT35G0735' => 'cansat', 'CANSAT54G0556' => 'cansat', 'CANSAT64G0356' => 'cansat', 'CANSAT78G2042' => 'cansat', 'CARHR125920' => 'chi', 'CARHR131910' => 'chi', 'CARHR172390' => 'chi', 'CARHR211140' => 'chi', 'CARHR285850' => 'chi', 'CARHR285860' => 'chi', 'Carub.0004s1347' => 'cru', 'Carub.0004s1960' => 'cru', 'Carub.0005s2880' => 'cru', 'Carub.0006s0107' => 'cru', 'Carub.0008s2015' => 'cru', 'Carub.0008s2016' => 'cru', 'Carub.0008s2017' => 'cru', 'Ca_01315_v3' => 'car', 'Ca_05063_v3' => 'car', 'Ca_10231_v3' => 'car', 'Ca_10913_v3' => 'car', 'Ca_19156_v3' => 'car', 'Ca_23644_v3' => 'car', 'Ca_26735_v3' => 'car', 'Cc01_g13130' => 'ccan', 'Cc02_g21690' => 'ccan', 'Cc03_g03600' => 'ccan', 'Cc06_g02510' => 'ccan', 'CDE02G1265' => 'cde', 'CDE05G0415' => 'cde', 'CDE08G1082' => 'cde', 'Cfa005780' => 'cfa', 'Cfa011522' => 'cfa', 'Cfa011523' => 'cfa', 'Cfa015627' => 'cfa', 'Cfa017359' => 'cfa', 'Ciclev10005687m.g' => 'ccl', 'Ciclev10012173m.g' => 'ccl', 'Ciclev10021621m.g' => 'ccl', 'Ciclev10028968m.g' => 'ccl', 'Ciclev10029907m.g' => 'ccl', 'CiPaw.01G164800' => 'cil', 'CiPaw.07G083700' => 'cil', 'CiPaw.07G127000' => 'cil', 'CiPaw.07G136900' => 'cil', 'CiPaw.08G081700' => 'cil', 'CiPaw.09G194600' => 'cil', 'CiPaw.10G146500' => 'cil', 'CiPaw.13G091500' => 'cil', 'CiPaw.13G091600' => 'cil', 'ClCG00G003390' => 'cla', 'ClCG01G007220' => 'cla', 'ClCG03G001370' => 'cla', 'ClCG04G008100' => 'cla', 'ClCG06G006110' => 'cla', 'ClCG06G006130' => 'cla', 'ClCG10G021210' => 'cla', 'COL.COLO4_07648' => 'col', 'COL.COLO4_07650' => 'col', 'COL.COLO4_07651' => 'col', 'COL.COLO4_14780' => 'col', 'COL.COLO4_18546' => 'col', 'COL.COLO4_18547' => 'col', 'COL.COLO4_23103' => 'col', 'COL.COLO4_30419' => 'col', 'COL.COLO4_34232' => 'col', 'Cpa.g.sc169.20' => 'cpa', 'Cpa.g.sc57.45' => 'cpa', 'Cpa.g.sc58.124' => 'cpa', 'Cpa.g.sc58.125' => 'cpa', 'Cpa.g.sc81.118' => 'cpa', 'Cpa.g.sc81.119' => 'cpa', 'Cre12.g524700' => 'cre', 'CsaV3_1G034430' => 'csa', 'CsaV3_1G034440' => 'csa', 'CsaV3_1G034450' => 'csa', 'CsaV3_3G034830' => 'csa', 'CsaV3_4G025090' => 'csa', 'CsaV3_5G018660' => 'csa', 'CsaV3_6G038160' => 'csa', 'CSS0003447' => 'camsi', 'CSS0017840' => 'camsi', 'CSS0019260' => 'camsi', 'CSS0040375' => 'camsi', 'CSS0042533' => 'camsi', 'DCAR_005960' => 'dca', 'DCAR_012104' => 'dca', 'DCAR_012105' => 'dca', 'DCAR_012293' => 'dca', 'DCAR_015632' => 'dca', 'DCAR_024602' => 'dca', 'DCAR_028752' => 'dca', 'Dinv06261' => 'din', 'Dinv13982' => 'din', 'Dinv17029' => 'din', 'Dinv18463' => 'din', 'Dinv33181' => 'din', 'Dinv35585' => 'din', 'Dinv37161' => 'din', 'Dinv42977' => 'din', 'Dinv43122' => 'din', 'Dinv44517' => 'din', 'Duzib093G0256' => 'dzi', 'Duzib106G1254' => 'dzi', 'Duzib128G1789' => 'dzi', 'Duzib133G0633' => 'dzi', 'Duzib138G0510' => 'dzi', 'Duzib150G1084' => 'dzi', 'Duzib168G0488' => 'dzi', 'Duzib168G1523' => 'dzi', 'Duzib170G0133' => 'dzi', 'ECA234G1433' => 'eca', 'ECA236G1432' => 'eca', 'ECA236G2256' => 'eca', 'ECA236G2365' => 'eca', 'ECA236G4830' => 'eca', 'ECA248G1505' => 'eca', 'EL10Ac3g06431' => 'bvu', 'EL10Ac5g12577' => 'bvu', 'EL10Ac6g13533' => 'bvu', 'EL10Ac7g16045' => 'bvu', 'Eucgr.A01281' => 'egr', 'Eucgr.B02326' => 'egr', 'Eucgr.H03532' => 'egr', 'Eucgr.K00553' => 'egr', 'Eucgr.K03116' => 'egr', 'FAN02G3963' => 'fan', 'FAN05G0438' => 'fan', 'FAN09G2434' => 'fan', 'FAN12G3984' => 'fan', 'FAN14G0798' => 'fan', 'FAN17G0652' => 'fan', 'FAN19G1988' => 'fan', 'FAN22G0632' => 'fan', 'FAN23G0387' => 'fan', 'FAN26G1323' => 'fan', 'FAN28G0666' => 'fan', 'FvH4_1g26080' => 'fve', 'FvH4_3g36780' => 'fve', 'FvH4_4g15270' => 'fve', 'FvH4_6g13490' => 'fve', 'Glyma.01G098700' => 'gma', 'Glyma.03G065900' => 'gma', 'Glyma.03G073754' => 'gma', 'Glyma.03G073758' => 'gma', 'Glyma.03G083200' => 'gma', 'Glyma.03G225500' => 'gma', 'Glyma.05G037766' => 'gma', 'Glyma.07G133500' => 'gma', 'Glyma.10G139400' => 'gma', 'Glyma.10G248900' => 'gma', 'Glyma.11G137800' => 'gma', 'Glyma.12G061300' => 'gma', 'Glyma.13G337900' => 'gma', 'Glyma.15G036600' => 'gma', 'Glyma.18G182800' => 'gma', 'Glyma.19G222500' => 'gma', 'Glyma.20G144800' => 'gma', 'Gohir.A01G222000' => 'ghi', 'Gohir.A03G044000' => 'ghi', 'Gohir.A03G044100' => 'ghi', 'Gohir.A04G083100' => 'ghi', 'Gohir.A07G127200' => 'ghi', 'Gohir.A07G132400' => 'ghi', 'Gohir.A08G000700' => 'ghi', 'Gohir.A11G327300' => 'ghi', 'Gohir.D01G211500' => 'ghi', 'Gohir.D03G123400' => 'ghi', 'Gohir.D03G123500' => 'ghi', 'Gohir.D04G121800' => 'ghi', 'Gohir.D07G131500' => 'ghi', 'Gohir.D07G136600' => 'ghi', 'Gohir.D08G011600' => 'ghi', 'Gohir.D11G346200' => 'ghi', 'Gorai.001G142800' => 'gra', 'Gorai.001G148700' => 'gra', 'Gorai.002G257300' => 'gra', 'Gorai.003G130000' => 'gra', 'Gorai.003G130100' => 'gra', 'Gorai.004G005300' => 'gra', 'Gorai.007G376500' => 'gra', 'Gorai.012G104700' => 'gra', 'GSVIVG01017946001' => 'vvi', 'GSVIVG01024928001' => 'vvi', 'GSVIVG01028227001' => 'vvi', 'GSVIVG01034151001' => 'vvi', 'HanXRQChr05g0135031' => 'han', 'HanXRQChr05g0135041' => 'han', 'HanXRQChr05g0140021' => 'han', 'HanXRQChr06g0178981' => 'han', 'HanXRQChr07g0188251' => 'han', 'HanXRQChr08g0235311' => 'han', 'HanXRQChr09g0271011' => 'han', 'HanXRQChr10g0293321' => 'han', 'HanXRQChr13g0388171' => 'han', 'Haze_00916' => 'cav', 'Haze_05063' => 'cav', 'Haze_20814' => 'cav', 'Haze_24128' => 'cav', 'Hma1.2p1_0745F.1_g212010' => 'hma', 'Hma1.2p1_0757F.1_g213260' => 'hma', 'Hma1.2p1_0936F.1_g238840' => 'hma', 'Hma1.2p1_1735F.1_g299890' => 'hma', 'Hma1.2p1_1861F.1_g305685' => 'hma', 'HPP92_003397' => 'vpl', 'HPP92_012597' => 'vpl', 'HPP92_015520' => 'vpl', 'HPP92_015539' => 'vpl', 'HPP92_020373' => 'vpl', 'Hund04938' => 'sun', 'Hund10677' => 'sun', 'Hund11033' => 'sun', 'Hund12155' => 'sun', 'Lalb_Chr01g0022551' => 'lal', 'Lalb_Chr03g0042341' => 'lal', 'Lalb_Chr07g0192931' => 'lal', 'Lalb_Chr12g0209551' => 'lal', 'Lalb_Chr19g0125251' => 'lal', 'Lalb_Chr19g0137891' => 'lal', 'Lalb_Chr21g0304641' => 'lal', 'Lalb_Chr21g0309881' => 'lal', 'Lj1A5T12' => 'lonja', 'Lj1C148G10' => 'lonja', 'Lj2A93T83' => 'lonja', 'Lj3A738G68' => 'lonja', 'Lj3C966T1' => 'lonja', 'Lj3g0018958' => 'lja', 'Lj3g0021831' => 'lja', 'Lj3g0025443' => 'lja', 'Lj4g0026809' => 'lja', 'Lj5g0012558' => 'lja', 'Lj5g0021586' => 'lja', 'Lsat_1_v5_gn_5_156840' => 'lsa', 'Lsat_1_v5_gn_8_73460' => 'lsa', 'Lsat_1_v5_gn_8_73481' => 'lsa', 'Lsat_1_v5_gn_9_31601' => 'lsa', 'Lsat_1_v5_gn_9_77320' => 'lsa', 'Manes.01G171300' => 'mes', 'Manes.01G171400' => 'mes', 'Manes.01G236100' => 'mes', 'Manes.02G130500' => 'mes', 'Manes.02G130600' => 'mes', 'Manes.03G180200' => 'mes', 'Manes.05G007000' => 'mes', 'Manes.08G084400' => 'mes', 'Manes.09G092600' => 'mes', 'Manes.15G027900' => 'mes', 'MBI04_g40948_MAGBIO' => 'mbi', 'MBI14_g12123_MAGBIO' => 'mbi', 'MBI18_g28915_MAGBIO' => 'mbi', 'MCO09G053' => 'mco', 'MCO11G782' => 'mco', 'MCO15G215' => 'mco', 'MD03G1088500' => 'mdo', 'MD03G1088600' => 'mdo', 'MD04G1130800' => 'mdo', 'MD09G1291700' => 'mdo', 'MD11G1097500' => 'mdo', 'MD11G1097600' => 'mdo', 'MD12G1143900' => 'mdo', 'MD13G1191400' => 'mdo', 'MD16G1191500' => 'mdo', 'Medtr1g085570' => 'mtr', 'Medtr1g104610' => 'mtr', 'Medtr2g097520' => 'mtr', 'Medtr4g021800' => 'mtr', 'Medtr4g021825' => 'mtr', 'Medtr4g064270' => 'mtr', 'Medtr4g064380' => 'mtr', 'Medtr7g062150' => 'mtr', 'MELO3C003138.2' => 'cme', 'MELO3C005187.2' => 'cme', 'MELO3C009252.2' => 'cme', 'MELO3C014481.2' => 'cme', 'MELO3C020616.2' => 'cme', 'MELO3C020617.2' => 'cme', 'MELO3C020618.2' => 'cme', 'Migut.G00328' => 'egut', 'Migut.J00320' => 'egut', 'Migut.L01000' => 'egut', 'Migut.L01953' => 'egut', 'MSTRG.10253' => 'ama', 'MSTRG.19077' => 'ama', 'MSTRG.26780' => 'ama', 'MSTRG.4023' => 'ama', 'MSTRG.5655' => 'ama', 'MSTRG.9992' => 'ama', 'Nitab4.5_0000043g0310' => 'nta', 'Nitab4.5_0000463g0080' => 'nta', 'Nitab4.5_0000705g0170' => 'nta', 'Nitab4.5_0001326g0060' => 'nta', 'Nitab4.5_0001628g0030' => 'nta', 'Nitab4.5_0002103g0110' => 'nta', 'Nitab4.5_0002946g0030' => 'nta', 'Nitab4.5_0004639g0030' => 'nta', 'Nn2g11149' => 'nnu', 'Nn2g13389' => 'nnu', 'Nn4g25326' => 'nnu', 'Nn4g26290' => 'nnu', 'Nn5g29865' => 'nnu', 'Oeu004163.1' => 'oeu', 'Oeu006901.1' => 'oeu', 'Oeu010096.1' => 'oeu', 'Oeu024340.1' => 'oeu', 'Oeu048369.1' => 'oeu', 'Os01g0973000' => 'osa', 'Os03g0273800' => 'osa', 'Os03g0701200' => 'osa', 'Os03g0834050' => 'osa', 'Os07g0634400' => 'osa', 'Peaxi162Scf00092g01414' => 'pax', 'Peaxi162Scf00165g00818' => 'pax', 'Peaxi162Scf00309g00516' => 'pax', 'Peaxi162Scf00774g00218' => 'pax', 'PGR004G1824' => 'pgr', 'PGR004G2606' => 'pgr', 'PGR031G2716' => 'pgr', 'PGR102G2460' => 'pgr', 'PGR142G2599' => 'pgr', 'PGSC0003DMG400000843' => 'stu', 'PGSC0003DMG400008829' => 'stu', 'PGSC0003DMG400030418' => 'stu', 'PGSC0003DMG400031834' => 'stu', 'PGSC0003DMG401028300' => 'stu', 'PGSC0003DMG402028300' => 'stu', 'Phvul.001G219300' => 'pvu', 'Phvul.007G056000' => 'pvu', 'Phvul.007G208000' => 'pvu', 'Phvul.008G119500' => 'pvu', 'Phvul.010G011200' => 'pvu', 'Phvul.010G014800' => 'pvu', 'Phvul.011G062900' => 'pvu', 'Phvul.L007043' => 'pvu', 'Potri.001G242300' => 'ptr', 'Potri.002G185300' => 'ptr', 'Potri.006G086900' => 'ptr', 'Potri.008G151700' => 'ptr', 'Potri.009G033500' => 'ptr', 'Potri.010G089300' => 'ptr', 'Potri.014G110800' => 'ptr', 'Pp3c27_8130' => 'ppa', 'Pp3c6_27410' => 'ppa', 'PRCOL_00001659' => 'pco', 'PRCOL_00001927' => 'pco', 'PRCOL_00003649' => 'pco', 'Prupe.1G011600' => 'ppe', 'Prupe.3G000800' => 'ppe', 'Prupe.3G001100' => 'ppe', 'Prupe.6G072700' => 'ppe', 'Prupe.6G072800' => 'ppe', 'Prupe.6G257300' => 'ppe', 'Prupe.8G033000' => 'ppe', 'Psat0s2633g0080' => 'psa', 'Psat0s3396g0080' => 'psa', 'Psat0s3396g0200' => 'psa', 'Psat3g139080' => 'psa', 'Psat5g285080' => 'psa', 'Psat6g157760' => 'psa', 'Psat6g208440' => 'psa', 'Psat7g215320' => 'psa', 'Psat7g215400' => 'psa', 'Psat7g235600' => 'psa', 'Psat7g235760' => 'psa', 'PSO063G4603' => 'pso', 'PSO210G0182' => 'pso', 'PSO210G0196' => 'pso', 'PSO339G0394' => 'pso', 'PSO339G4127' => 'pso', 'PSO513G0064' => 'pso', 'PSO761G0079' => 'pso', 'QL01p031003' => 'qlo', 'QL01p031078' => 'qlo', 'QL06p003004' => 'qlo', 'QL07p048731' => 'qlo', 'QL09p037427' => 'qlo', 'RcHm_v2.0_Chr3g0466361' => 'rch', 'RcHm_v2.0_Chr3g0485571' => 'rch', 'RcHm_v2.0_Chr4g0416551' => 'rch', 'RcHm_v2.0_Chr5g0065831' => 'rch', 'Rhsim01G0230500' => 'rsi', 'Rhsim05G0194000' => 'rsi', 'Rhsim08G0250400' => 'rsi', 'Sabra02G0131000' => 'sbr', 'Sabra06G0066300' => 'sbr', 'Sabra08G0115500' => 'sbr', 'Sabra09G0023900' => 'sbr', 'Sabra10G0054000' => 'sbr', 'Sabra14G0081500' => 'sbr', 'Sabra16G0147100' => 'sbr', 'SalBow2G2957' => 'sbo', 'SalBow4G3320' => 'sbo', 'SalBow8G1894' => 'sbo', 'Sc07g0007950' => 'sci', 'Sc12g0001360' => 'sci', 'Sc13g0004330' => 'sci', 'Sc20g0005010' => 'sci', 'Sed0000361' => 'sed', 'Sed0001706' => 'sed', 'Sed0002422' => 'sed', 'Sed0004029' => 'sed', 'Sed0004602' => 'sed', 'Sed0004943' => 'sed', 'Sed0008646' => 'sed', 'Sed0023313' => 'sed', 'Sed0024843' => 'sed', 'SEGI_00081' => 'sgi', 'SEGI_00947' => 'sgi', 'SEGI_04046' => 'sgi', 'SEGI_06880' => 'sgi', 'SEGI_09736' => 'sgi', 'SEGI_12741' => 'sgi', 'SEGI_14530' => 'sgi', 'SEGI_20705' => 'sgi', 'SEGI_26088' => 'sgi', 'SEGI_28323' => 'sgi', 'SEGI_33343' => 'sgi', 'SGA_v2.0_scaffold126G33775' => 'sas', 'SGA_v2.0_scaffold2G01337' => 'sas', 'SGA_v2.0_scaffold38G15006' => 'sas', 'SGA_v2.0_scaffold39G15264' => 'sas', 'SGA_v2.0_scaffold453G51880' => 'sas', 'SHI12696' => 'shi', 'SMO367G1096' => 'smo', 'Solyc01g068630.3' => 'sly', 'Solyc05g011880.3' => 'sly', 'Solyc06g076300.3' => 'sly', 'Solyc09g010940.4' => 'sly', 'Solyc09g075890.3' => 'sly', 'Sopen01g030560' => 'spe', 'Sopen05g006630' => 'spe', 'Sopen06g032720' => 'spe', 'Sopen09g005660' => 'spe', 'Sopen09g030690' => 'spe', 'Sp4g14540' => 'spa', 'Sp4g20030' => 'spa', 'Sp5g01320' => 'spa', 'Sp6g21170' => 'spa', 'Sp6g21180' => 'spa', 'Sp6g21190' => 'spa', 'Sp6g40220' => 'spa', 'TAR362G0122' => 'tar', 'TAR362G1338' => 'tar', 'TAR369G0590' => 'tar', 'TAR371G0824' => 'tar', 'TAR622G1429' => 'tar', 'TAR623G0734' => 'tar', 'TAR625G0441' => 'tar', 'TAR629G0976' => 'tar', 'TAR633G1195' => 'tar', 'TAR636G2660' => 'tar', 'THA.LOC104799440' => 'tha', 'THA.LOC104800966' => 'tha', 'THA.LOC104806559' => 'tha', 'THA.LOC104810765' => 'tha', 'THA.LOC104816266' => 'tha', 'THA.LOC104817419' => 'tha', 'THA.LOC104827021' => 'tha', 'Thecc.01G327400' => 'tca', 'Thecc.04G229200' => 'tca', 'Thecc.05G037400' => 'tca', 'Thecc.09G318600' => 'tca', 'Thecc.09G318700' => 'tca', 'Thhalv10006238m.g' => 'esa', 'Thhalv10014321m.g' => 'esa', 'Thhalv10014335m.g' => 'esa', 'Thhalv10015826m.g' => 'esa', 'Thhalv10017107m.g' => 'esa', 'Thhalv10017180m.g' => 'esa', 'Thhalv10029339m.g' => 'esa', 'TPR.G1699' => 'tpr', 'TPR.G23609' => 'tpr', 'TPR.G3081' => 'tpr', 'TPR.G40397' => 'tpr', 'TPR.G5522' => 'tpr', 'TPR.G5618' => 'tpr', 'TPR.G5626' => 'tpr', 'TWI09G1632' => 'twi', 'TWI23G1230' => 'twi', 'TWI53G1064' => 'twi', 'TWI59G0751' => 'twi', 'TWI74G0947' => 'twi', 'TWI77G0337' => 'twi', 'TWI79G1254' => 'twi', 'unitig_0.g2341' => 'ugi', 'unitig_26.g10006' => 'ugi', 'unitig_26.g10008' => 'ugi', 'unitig_26.g9192' => 'ugi', 'vmacro14547' => 'vma', 'vmacro15333' => 'vma', 'vmacro18743' => 'vma', 'vmacro20166' => 'vma', 'VMungo0331G0523' => 'vmu', 'VMungo0331G1202' => 'vmu', 'VMungo0720G1228' => 'vmu', 'VMungo0720G1514' => 'vmu', 'VMungo1080G0169' => 'vmu', 'VMungo1127G1475' => 'vmu', 'VMungo1383G1208' => 'vmu', 'VMungo1383G1698' => 'vmu', 'Zm00001eb012270' => 'zma', 'Zm00001eb054100' => 'zma', 'Zm00001eb063350' => 'zma', 'Zm00001eb328560' => 'zma', 'Zm00001eb342820' => 'zma', 'Zm00001eb362210' => 'zma', 'Zm00001eb397730' => 'zma', 'Zm00001eb399750' => 'zma' ) $gf_id = 'HOM05D000959' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000959' ) $data_identifier = 'HOM05D000959' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 5, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 5, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 10, 'mbi' => (int) 3, 'mco' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 2, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 3, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 11, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399750' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000959', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '622', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p07100' => 'bna', 'A03p11720' => 'bna', 'A05p08300' => 'bna', 'A05p13380' => 'bna', 'A09p54130' => 'bna', 'A10p16690' => 'bna', 'A10p16700' => 'bna', 'A10p33390' => 'bna', 'Aa31LG10G16020' => 'aar', 'Aa31LG1G11810' => 'aar', 'Aa31LG1G11830' => 'aar', 'Aa31LG1G22510' => 'aar', 'Aa31LG5G4890' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5793' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2310' => 'aag', 'Actinidia08499' => 'ach', 'Actinidia11262' => 'ach', 'Actinidia23926' => 'ach', 'Actinidia34420' => 'ach', 'Actinidia36970' => 'ach', 'Ah.02g111220' => 'amhyb', 'Ah.15g097750' => 'amhyb', 'AL4G27500' => 'aly', 'AL6G11470' => 'aly', 'AL8G35950' => 'aly', 'AL8G35960' => 'aly', 'AL8G35970' => 'aly', 'Aqoxy1G00912' => 'aox', 'Aqoxy2G02253' => 'aox', 'Aqoxy2G02411' => 'aox', 'Aqoxy5G00485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BZ66YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K8ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM4FUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6BF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HFV7XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25JBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0YNNV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MAKK6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P70IT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP2Z6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V61LZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YWP64R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3S9AI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7PGHH' => 'arhy', 'AT2G32150' => 'ath', 'AT3G62040' => 'ath', 'AT5G02230' => 'ath', 'AT5G59480' => 'ath', 'AT5G59490' => 'ath', 'ATR0332G060' => 'atr', 'ATR0559G190' => 'atr', 'ATR0693G294' => 'atr', 'Atru.chr3.3975' => 'acertr', 'Atru.chr3.3976' => 'acertr', 'Atru.chr3.3977' => 'acertr', 'Atru.chr4.2498' => 'acertr', 'Atru.chr5.838' => 'acertr', 'Atru.chr8.1990' => 'acertr', 'Atru.chr8.1991' => 'acertr', 'Atru.chr8.1992' => 'acertr', 'AUR62001759' => 'cqu', 'AUR62009545' => 'cqu', 'AUR62010474' => 'cqu', 'AUR62025820' => 'cqu', 'AUR62030422' => 'cqu', 'AUR62033605' => 'cqu', 'AUR62038615' => 'cqu', 'AUR62041347' => 'cqu', 'BcaB01g04574' => 'bca', 'BcaB02g09263' => 'bca', 'BcaB02g10453' => 'bca', 'BcaB05g22513' => 'bca', 'BcaB08g36253' => 'bca', 'BcaB08g36254' => 'bca', 'BcaC01g06519' => 'bca', 'BcaC02g11889' => 'bca', 'BcaC03g14010' => 'bca', 'BcaC03g18439' => 'bca', 'BcaC04g19765' => 'bca', 'BcaC09g48432' => 'bca', 'BcaNung07302' => 'bca', 'BolC2t06040H' => 'bol', 'BolC2t07346H' => 'bol', 'BolC3t13817H' => 'bol', 'BolC4t22625H' => 'bol', 'BolC4t23297H' => 'bol', 'BolC8t51278H' => 'bol', 'BolC9t58050H' => 'bol', 'BolC9t58051H' => 'bol', 'BolC9t60163H' => 'bol', 'BraA02t04712Z' => 'bra', 'BraA02t05791Z' => 'bra', 'BraA03t10483Z' => 'bra', 'BraA05t19795Z' => 'bra', 'BraA05t20276Z' => 'bra', 'BraA09t40827Z' => 'bra', 'BraA10t43750Z' => 'bra', 'BraA10t43751Z' => 'bra', 'BraA10t45370Z' => 'bra', 'C02p00400' => 'bna', 'C02p12460' => 'bna', 'C03p13680' => 'bna', 'C04p10270' => 'bna', 'C04p17500' => 'bna', 'C08p37010' => 'bna', 'C09p51880' => 'bna', 'C09p51890' => 'bna', 'C09p74300' => 'bna', 'CAN.G179.26' => 'can', 'CAN.G3384.1' => 'can', 'CAN.G394.68' => 'can', 'CAN.G907.13' => 'can', 'CANSAT11G0012' => 'cansat', 'CANSAT25G1586' => 'cansat', 'CANSAT35G0735' => 'cansat', 'CANSAT54G0556' => 'cansat', 'CANSAT64G0356' => 'cansat', 'CANSAT78G2042' => 'cansat', 'CARHR125920' => 'chi', 'CARHR131910' => 'chi', 'CARHR172390' => 'chi', 'CARHR211140' => 'chi', 'CARHR285850' => 'chi', 'CARHR285860' => 'chi', 'Carub.0004s1347' => 'cru', 'Carub.0004s1960' => 'cru', 'Carub.0005s2880' => 'cru', 'Carub.0006s0107' => 'cru', 'Carub.0008s2015' => 'cru', 'Carub.0008s2016' => 'cru', 'Carub.0008s2017' => 'cru', 'Ca_01315_v3' => 'car', 'Ca_05063_v3' => 'car', 'Ca_10231_v3' => 'car', 'Ca_10913_v3' => 'car', 'Ca_19156_v3' => 'car', 'Ca_23644_v3' => 'car', 'Ca_26735_v3' => 'car', 'Cc01_g13130' => 'ccan', 'Cc02_g21690' => 'ccan', 'Cc03_g03600' => 'ccan', 'Cc06_g02510' => 'ccan', 'CDE02G1265' => 'cde', 'CDE05G0415' => 'cde', 'CDE08G1082' => 'cde', 'Cfa005780' => 'cfa', 'Cfa011522' => 'cfa', 'Cfa011523' => 'cfa', 'Cfa015627' => 'cfa', 'Cfa017359' => 'cfa', 'Ciclev10005687m.g' => 'ccl', 'Ciclev10012173m.g' => 'ccl', 'Ciclev10021621m.g' => 'ccl', 'Ciclev10028968m.g' => 'ccl', 'Ciclev10029907m.g' => 'ccl', 'CiPaw.01G164800' => 'cil', 'CiPaw.07G083700' => 'cil', 'CiPaw.07G127000' => 'cil', 'CiPaw.07G136900' => 'cil', 'CiPaw.08G081700' => 'cil', 'CiPaw.09G194600' => 'cil', 'CiPaw.10G146500' => 'cil', 'CiPaw.13G091500' => 'cil', 'CiPaw.13G091600' => 'cil', 'ClCG00G003390' => 'cla', 'ClCG01G007220' => 'cla', 'ClCG03G001370' => 'cla', 'ClCG04G008100' => 'cla', 'ClCG06G006110' => 'cla', 'ClCG06G006130' => 'cla', 'ClCG10G021210' => 'cla', 'COL.COLO4_07648' => 'col', 'COL.COLO4_07650' => 'col', 'COL.COLO4_07651' => 'col', 'COL.COLO4_14780' => 'col', 'COL.COLO4_18546' => 'col', 'COL.COLO4_18547' => 'col', 'COL.COLO4_23103' => 'col', 'COL.COLO4_30419' => 'col', 'COL.COLO4_34232' => 'col', 'Cpa.g.sc169.20' => 'cpa', 'Cpa.g.sc57.45' => 'cpa', 'Cpa.g.sc58.124' => 'cpa', 'Cpa.g.sc58.125' => 'cpa', 'Cpa.g.sc81.118' => 'cpa', 'Cpa.g.sc81.119' => 'cpa', 'Cre12.g524700' => 'cre', 'CsaV3_1G034430' => 'csa', 'CsaV3_1G034440' => 'csa', 'CsaV3_1G034450' => 'csa', 'CsaV3_3G034830' => 'csa', 'CsaV3_4G025090' => 'csa', 'CsaV3_5G018660' => 'csa', 'CsaV3_6G038160' => 'csa', 'CSS0003447' => 'camsi', 'CSS0017840' => 'camsi', 'CSS0019260' => 'camsi', 'CSS0040375' => 'camsi', 'CSS0042533' => 'camsi', 'DCAR_005960' => 'dca', 'DCAR_012104' => 'dca', 'DCAR_012105' => 'dca', 'DCAR_012293' => 'dca', 'DCAR_015632' => 'dca', 'DCAR_024602' => 'dca', 'DCAR_028752' => 'dca', 'Dinv06261' => 'din', 'Dinv13982' => 'din', 'Dinv17029' => 'din', 'Dinv18463' => 'din', 'Dinv33181' => 'din', 'Dinv35585' => 'din', 'Dinv37161' => 'din', 'Dinv42977' => 'din', 'Dinv43122' => 'din', 'Dinv44517' => 'din', 'Duzib093G0256' => 'dzi', 'Duzib106G1254' => 'dzi', 'Duzib128G1789' => 'dzi', 'Duzib133G0633' => 'dzi', 'Duzib138G0510' => 'dzi', 'Duzib150G1084' => 'dzi', 'Duzib168G0488' => 'dzi', 'Duzib168G1523' => 'dzi', 'Duzib170G0133' => 'dzi', 'ECA234G1433' => 'eca', 'ECA236G1432' => 'eca', 'ECA236G2256' => 'eca', 'ECA236G2365' => 'eca', 'ECA236G4830' => 'eca', 'ECA248G1505' => 'eca', 'EL10Ac3g06431' => 'bvu', 'EL10Ac5g12577' => 'bvu', 'EL10Ac6g13533' => 'bvu', 'EL10Ac7g16045' => 'bvu', 'Eucgr.A01281' => 'egr', 'Eucgr.B02326' => 'egr', 'Eucgr.H03532' => 'egr', 'Eucgr.K00553' => 'egr', 'Eucgr.K03116' => 'egr', 'FAN02G3963' => 'fan', 'FAN05G0438' => 'fan', 'FAN09G2434' => 'fan', 'FAN12G3984' => 'fan', 'FAN14G0798' => 'fan', 'FAN17G0652' => 'fan', 'FAN19G1988' => 'fan', 'FAN22G0632' => 'fan', 'FAN23G0387' => 'fan', 'FAN26G1323' => 'fan', 'FAN28G0666' => 'fan', 'FvH4_1g26080' => 'fve', 'FvH4_3g36780' => 'fve', 'FvH4_4g15270' => 'fve', 'FvH4_6g13490' => 'fve', 'Glyma.01G098700' => 'gma', 'Glyma.03G065900' => 'gma', 'Glyma.03G073754' => 'gma', 'Glyma.03G073758' => 'gma', 'Glyma.03G083200' => 'gma', 'Glyma.03G225500' => 'gma', 'Glyma.05G037766' => 'gma', 'Glyma.07G133500' => 'gma', 'Glyma.10G139400' => 'gma', 'Glyma.10G248900' => 'gma', 'Glyma.11G137800' => 'gma', 'Glyma.12G061300' => 'gma', 'Glyma.13G337900' => 'gma', 'Glyma.15G036600' => 'gma', 'Glyma.18G182800' => 'gma', 'Glyma.19G222500' => 'gma', 'Glyma.20G144800' => 'gma', 'Gohir.A01G222000' => 'ghi', 'Gohir.A03G044000' => 'ghi', 'Gohir.A03G044100' => 'ghi', 'Gohir.A04G083100' => 'ghi', 'Gohir.A07G127200' => 'ghi', 'Gohir.A07G132400' => 'ghi', 'Gohir.A08G000700' => 'ghi', 'Gohir.A11G327300' => 'ghi', 'Gohir.D01G211500' => 'ghi', 'Gohir.D03G123400' => 'ghi', 'Gohir.D03G123500' => 'ghi', 'Gohir.D04G121800' => 'ghi', 'Gohir.D07G131500' => 'ghi', 'Gohir.D07G136600' => 'ghi', 'Gohir.D08G011600' => 'ghi', 'Gohir.D11G346200' => 'ghi', 'Gorai.001G142800' => 'gra', 'Gorai.001G148700' => 'gra', 'Gorai.002G257300' => 'gra', 'Gorai.003G130000' => 'gra', 'Gorai.003G130100' => 'gra', 'Gorai.004G005300' => 'gra', 'Gorai.007G376500' => 'gra', 'Gorai.012G104700' => 'gra', 'GSVIVG01017946001' => 'vvi', 'GSVIVG01024928001' => 'vvi', 'GSVIVG01028227001' => 'vvi', 'GSVIVG01034151001' => 'vvi', 'HanXRQChr05g0135031' => 'han', 'HanXRQChr05g0135041' => 'han', 'HanXRQChr05g0140021' => 'han', 'HanXRQChr06g0178981' => 'han', 'HanXRQChr07g0188251' => 'han', 'HanXRQChr08g0235311' => 'han', 'HanXRQChr09g0271011' => 'han', 'HanXRQChr10g0293321' => 'han', 'HanXRQChr13g0388171' => 'han', 'Haze_00916' => 'cav', 'Haze_05063' => 'cav', 'Haze_20814' => 'cav', 'Haze_24128' => 'cav', 'Hma1.2p1_0745F.1_g212010' => 'hma', 'Hma1.2p1_0757F.1_g213260' => 'hma', 'Hma1.2p1_0936F.1_g238840' => 'hma', 'Hma1.2p1_1735F.1_g299890' => 'hma', 'Hma1.2p1_1861F.1_g305685' => 'hma', 'HPP92_003397' => 'vpl', 'HPP92_012597' => 'vpl', 'HPP92_015520' => 'vpl', 'HPP92_015539' => 'vpl', 'HPP92_020373' => 'vpl', 'Hund04938' => 'sun', 'Hund10677' => 'sun', 'Hund11033' => 'sun', 'Hund12155' => 'sun', 'Lalb_Chr01g0022551' => 'lal', 'Lalb_Chr03g0042341' => 'lal', 'Lalb_Chr07g0192931' => 'lal', 'Lalb_Chr12g0209551' => 'lal', 'Lalb_Chr19g0125251' => 'lal', 'Lalb_Chr19g0137891' => 'lal', 'Lalb_Chr21g0304641' => 'lal', 'Lalb_Chr21g0309881' => 'lal', 'Lj1A5T12' => 'lonja', 'Lj1C148G10' => 'lonja', 'Lj2A93T83' => 'lonja', 'Lj3A738G68' => 'lonja', 'Lj3C966T1' => 'lonja', 'Lj3g0018958' => 'lja', 'Lj3g0021831' => 'lja', 'Lj3g0025443' => 'lja', 'Lj4g0026809' => 'lja', 'Lj5g0012558' => 'lja', 'Lj5g0021586' => 'lja', 'Lsat_1_v5_gn_5_156840' => 'lsa', 'Lsat_1_v5_gn_8_73460' => 'lsa', 'Lsat_1_v5_gn_8_73481' => 'lsa', 'Lsat_1_v5_gn_9_31601' => 'lsa', 'Lsat_1_v5_gn_9_77320' => 'lsa', 'Manes.01G171300' => 'mes', 'Manes.01G171400' => 'mes', 'Manes.01G236100' => 'mes', 'Manes.02G130500' => 'mes', 'Manes.02G130600' => 'mes', 'Manes.03G180200' => 'mes', 'Manes.05G007000' => 'mes', 'Manes.08G084400' => 'mes', 'Manes.09G092600' => 'mes', 'Manes.15G027900' => 'mes', 'MBI04_g40948_MAGBIO' => 'mbi', 'MBI14_g12123_MAGBIO' => 'mbi', 'MBI18_g28915_MAGBIO' => 'mbi', 'MCO09G053' => 'mco', 'MCO11G782' => 'mco', 'MCO15G215' => 'mco', 'MD03G1088500' => 'mdo', 'MD03G1088600' => 'mdo', 'MD04G1130800' => 'mdo', 'MD09G1291700' => 'mdo', 'MD11G1097500' => 'mdo', 'MD11G1097600' => 'mdo', 'MD12G1143900' => 'mdo', 'MD13G1191400' => 'mdo', 'MD16G1191500' => 'mdo', 'Medtr1g085570' => 'mtr', 'Medtr1g104610' => 'mtr', 'Medtr2g097520' => 'mtr', 'Medtr4g021800' => 'mtr', 'Medtr4g021825' => 'mtr', 'Medtr4g064270' => 'mtr', 'Medtr4g064380' => 'mtr', 'Medtr7g062150' => 'mtr', 'MELO3C003138.2' => 'cme', 'MELO3C005187.2' => 'cme', 'MELO3C009252.2' => 'cme', 'MELO3C014481.2' => 'cme', 'MELO3C020616.2' => 'cme', 'MELO3C020617.2' => 'cme', 'MELO3C020618.2' => 'cme', 'Migut.G00328' => 'egut', 'Migut.J00320' => 'egut', 'Migut.L01000' => 'egut', 'Migut.L01953' => 'egut', 'MSTRG.10253' => 'ama', 'MSTRG.19077' => 'ama', 'MSTRG.26780' => 'ama', 'MSTRG.4023' => 'ama', 'MSTRG.5655' => 'ama', 'MSTRG.9992' => 'ama', 'Nitab4.5_0000043g0310' => 'nta', 'Nitab4.5_0000463g0080' => 'nta', 'Nitab4.5_0000705g0170' => 'nta', 'Nitab4.5_0001326g0060' => 'nta', 'Nitab4.5_0001628g0030' => 'nta', 'Nitab4.5_0002103g0110' => 'nta', 'Nitab4.5_0002946g0030' => 'nta', 'Nitab4.5_0004639g0030' => 'nta', 'Nn2g11149' => 'nnu', 'Nn2g13389' => 'nnu', 'Nn4g25326' => 'nnu', 'Nn4g26290' => 'nnu', 'Nn5g29865' => 'nnu', 'Oeu004163.1' => 'oeu', 'Oeu006901.1' => 'oeu', 'Oeu010096.1' => 'oeu', 'Oeu024340.1' => 'oeu', 'Oeu048369.1' => 'oeu', 'Os01g0973000' => 'osa', 'Os03g0273800' => 'osa', 'Os03g0701200' => 'osa', 'Os03g0834050' => 'osa', 'Os07g0634400' => 'osa', 'Peaxi162Scf00092g01414' => 'pax', 'Peaxi162Scf00165g00818' => 'pax', 'Peaxi162Scf00309g00516' => 'pax', 'Peaxi162Scf00774g00218' => 'pax', 'PGR004G1824' => 'pgr', 'PGR004G2606' => 'pgr', 'PGR031G2716' => 'pgr', 'PGR102G2460' => 'pgr', 'PGR142G2599' => 'pgr', 'PGSC0003DMG400000843' => 'stu', 'PGSC0003DMG400008829' => 'stu', 'PGSC0003DMG400030418' => 'stu', 'PGSC0003DMG400031834' => 'stu', 'PGSC0003DMG401028300' => 'stu', 'PGSC0003DMG402028300' => 'stu', 'Phvul.001G219300' => 'pvu', 'Phvul.007G056000' => 'pvu', 'Phvul.007G208000' => 'pvu', 'Phvul.008G119500' => 'pvu', 'Phvul.010G011200' => 'pvu', 'Phvul.010G014800' => 'pvu', 'Phvul.011G062900' => 'pvu', 'Phvul.L007043' => 'pvu', 'Potri.001G242300' => 'ptr', 'Potri.002G185300' => 'ptr', 'Potri.006G086900' => 'ptr', 'Potri.008G151700' => 'ptr', 'Potri.009G033500' => 'ptr', 'Potri.010G089300' => 'ptr', 'Potri.014G110800' => 'ptr', 'Pp3c27_8130' => 'ppa', 'Pp3c6_27410' => 'ppa', 'PRCOL_00001659' => 'pco', 'PRCOL_00001927' => 'pco', 'PRCOL_00003649' => 'pco', 'Prupe.1G011600' => 'ppe', 'Prupe.3G000800' => 'ppe', 'Prupe.3G001100' => 'ppe', 'Prupe.6G072700' => 'ppe', 'Prupe.6G072800' => 'ppe', 'Prupe.6G257300' => 'ppe', 'Prupe.8G033000' => 'ppe', 'Psat0s2633g0080' => 'psa', 'Psat0s3396g0080' => 'psa', 'Psat0s3396g0200' => 'psa', 'Psat3g139080' => 'psa', 'Psat5g285080' => 'psa', 'Psat6g157760' => 'psa', 'Psat6g208440' => 'psa', 'Psat7g215320' => 'psa', 'Psat7g215400' => 'psa', 'Psat7g235600' => 'psa', 'Psat7g235760' => 'psa', 'PSO063G4603' => 'pso', 'PSO210G0182' => 'pso', 'PSO210G0196' => 'pso', 'PSO339G0394' => 'pso', 'PSO339G4127' => 'pso', 'PSO513G0064' => 'pso', 'PSO761G0079' => 'pso', 'QL01p031003' => 'qlo', 'QL01p031078' => 'qlo', 'QL06p003004' => 'qlo', 'QL07p048731' => 'qlo', 'QL09p037427' => 'qlo', 'RcHm_v2.0_Chr3g0466361' => 'rch', 'RcHm_v2.0_Chr3g0485571' => 'rch', 'RcHm_v2.0_Chr4g0416551' => 'rch', 'RcHm_v2.0_Chr5g0065831' => 'rch', 'Rhsim01G0230500' => 'rsi', 'Rhsim05G0194000' => 'rsi', 'Rhsim08G0250400' => 'rsi', 'Sabra02G0131000' => 'sbr', 'Sabra06G0066300' => 'sbr', 'Sabra08G0115500' => 'sbr', 'Sabra09G0023900' => 'sbr', 'Sabra10G0054000' => 'sbr', 'Sabra14G0081500' => 'sbr', 'Sabra16G0147100' => 'sbr', 'SalBow2G2957' => 'sbo', 'SalBow4G3320' => 'sbo', 'SalBow8G1894' => 'sbo', 'Sc07g0007950' => 'sci', 'Sc12g0001360' => 'sci', 'Sc13g0004330' => 'sci', 'Sc20g0005010' => 'sci', 'Sed0000361' => 'sed', 'Sed0001706' => 'sed', 'Sed0002422' => 'sed', 'Sed0004029' => 'sed', 'Sed0004602' => 'sed', 'Sed0004943' => 'sed', 'Sed0008646' => 'sed', 'Sed0023313' => 'sed', 'Sed0024843' => 'sed', 'SEGI_00081' => 'sgi', 'SEGI_00947' => 'sgi', 'SEGI_04046' => 'sgi', 'SEGI_06880' => 'sgi', 'SEGI_09736' => 'sgi', 'SEGI_12741' => 'sgi', 'SEGI_14530' => 'sgi', 'SEGI_20705' => 'sgi', 'SEGI_26088' => 'sgi', 'SEGI_28323' => 'sgi', 'SEGI_33343' => 'sgi', 'SGA_v2.0_scaffold126G33775' => 'sas', 'SGA_v2.0_scaffold2G01337' => 'sas', 'SGA_v2.0_scaffold38G15006' => 'sas', 'SGA_v2.0_scaffold39G15264' => 'sas', 'SGA_v2.0_scaffold453G51880' => 'sas', 'SHI12696' => 'shi', 'SMO367G1096' => 'smo', 'Solyc01g068630.3' => 'sly', 'Solyc05g011880.3' => 'sly', 'Solyc06g076300.3' => 'sly', 'Solyc09g010940.4' => 'sly', 'Solyc09g075890.3' => 'sly', 'Sopen01g030560' => 'spe', 'Sopen05g006630' => 'spe', 'Sopen06g032720' => 'spe', 'Sopen09g005660' => 'spe', 'Sopen09g030690' => 'spe', 'Sp4g14540' => 'spa', 'Sp4g20030' => 'spa', 'Sp5g01320' => 'spa', 'Sp6g21170' => 'spa', 'Sp6g21180' => 'spa', 'Sp6g21190' => 'spa', 'Sp6g40220' => 'spa', 'TAR362G0122' => 'tar', 'TAR362G1338' => 'tar', 'TAR369G0590' => 'tar', 'TAR371G0824' => 'tar', 'TAR622G1429' => 'tar', 'TAR623G0734' => 'tar', 'TAR625G0441' => 'tar', 'TAR629G0976' => 'tar', 'TAR633G1195' => 'tar', 'TAR636G2660' => 'tar', 'THA.LOC104799440' => 'tha', 'THA.LOC104800966' => 'tha', 'THA.LOC104806559' => 'tha', 'THA.LOC104810765' => 'tha', 'THA.LOC104816266' => 'tha', 'THA.LOC104817419' => 'tha', 'THA.LOC104827021' => 'tha', 'Thecc.01G327400' => 'tca', 'Thecc.04G229200' => 'tca', 'Thecc.05G037400' => 'tca', 'Thecc.09G318600' => 'tca', 'Thecc.09G318700' => 'tca', 'Thhalv10006238m.g' => 'esa', 'Thhalv10014321m.g' => 'esa', 'Thhalv10014335m.g' => 'esa', 'Thhalv10015826m.g' => 'esa', 'Thhalv10017107m.g' => 'esa', 'Thhalv10017180m.g' => 'esa', 'Thhalv10029339m.g' => 'esa', 'TPR.G1699' => 'tpr', 'TPR.G23609' => 'tpr', 'TPR.G3081' => 'tpr', 'TPR.G40397' => 'tpr', 'TPR.G5522' => 'tpr', 'TPR.G5618' => 'tpr', 'TPR.G5626' => 'tpr', 'TWI09G1632' => 'twi', 'TWI23G1230' => 'twi', 'TWI53G1064' => 'twi', 'TWI59G0751' => 'twi', 'TWI74G0947' => 'twi', 'TWI77G0337' => 'twi', 'TWI79G1254' => 'twi', 'unitig_0.g2341' => 'ugi', 'unitig_26.g10006' => 'ugi', 'unitig_26.g10008' => 'ugi', 'unitig_26.g9192' => 'ugi', 'vmacro14547' => 'vma', 'vmacro15333' => 'vma', 'vmacro18743' => 'vma', 'vmacro20166' => 'vma', 'VMungo0331G0523' => 'vmu', 'VMungo0331G1202' => 'vmu', 'VMungo0720G1228' => 'vmu', 'VMungo0720G1514' => 'vmu', 'VMungo1080G0169' => 'vmu', 'VMungo1127G1475' => 'vmu', 'VMungo1383G1208' => 'vmu', 'VMungo1383G1698' => 'vmu', 'Zm00001eb012270' => 'zma', 'Zm00001eb054100' => 'zma', 'Zm00001eb063350' => 'zma', 'Zm00001eb328560' => 'zma', 'Zm00001eb342820' => 'zma', 'Zm00001eb362210' => 'zma', 'Zm00001eb397730' => 'zma', 'Zm00001eb399750' => 'zma' ), 'gf_id' => 'HOM05D000959', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000959' ), 'data_identifier' => 'HOM05D000959', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000959', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '622', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p07100' => 'bna', 'A03p11720' => 'bna', 'A05p08300' => 'bna', 'A05p13380' => 'bna', 'A09p54130' => 'bna', 'A10p16690' => 'bna', 'A10p16700' => 'bna', 'A10p33390' => 'bna', 'Aa31LG10G16020' => 'aar', 'Aa31LG1G11810' => 'aar', 'Aa31LG1G11830' => 'aar', 'Aa31LG1G22510' => 'aar', 'Aa31LG5G4890' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5793' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2310' => 'aag', 'Actinidia08499' => 'ach', 'Actinidia11262' => 'ach', 'Actinidia23926' => 'ach', 'Actinidia34420' => 'ach', 'Actinidia36970' => 'ach', 'Ah.02g111220' => 'amhyb', 'Ah.15g097750' => 'amhyb', 'AL4G27500' => 'aly', 'AL6G11470' => 'aly', 'AL8G35950' => 'aly', 'AL8G35960' => 'aly', 'AL8G35970' => 'aly', 'Aqoxy1G00912' => 'aox', 'Aqoxy2G02253' => 'aox', 'Aqoxy2G02411' => 'aox', 'Aqoxy5G00485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BZ66YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K8ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM4FUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6BF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HFV7XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25JBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0YNNV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MAKK6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P70IT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP2Z6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V61LZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YWP64R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3S9AI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7PGHH' => 'arhy', 'AT2G32150' => 'ath', 'AT3G62040' => 'ath', 'AT5G02230' => 'ath', 'AT5G59480' => 'ath', 'AT5G59490' => 'ath', 'ATR0332G060' => 'atr', 'ATR0559G190' => 'atr', 'ATR0693G294' => 'atr', 'Atru.chr3.3975' => 'acertr', 'Atru.chr3.3976' => 'acertr', 'Atru.chr3.3977' => 'acertr', 'Atru.chr4.2498' => 'acertr', 'Atru.chr5.838' => 'acertr', 'Atru.chr8.1990' => 'acertr', 'Atru.chr8.1991' => 'acertr', 'Atru.chr8.1992' => 'acertr', 'AUR62001759' => 'cqu', 'AUR62009545' => 'cqu', 'AUR62010474' => 'cqu', 'AUR62025820' => 'cqu', 'AUR62030422' => 'cqu', 'AUR62033605' => 'cqu', 'AUR62038615' => 'cqu', 'AUR62041347' => 'cqu', 'BcaB01g04574' => 'bca', 'BcaB02g09263' => 'bca', 'BcaB02g10453' => 'bca', 'BcaB05g22513' => 'bca', 'BcaB08g36253' => 'bca', 'BcaB08g36254' => 'bca', 'BcaC01g06519' => 'bca', 'BcaC02g11889' => 'bca', 'BcaC03g14010' => 'bca', 'BcaC03g18439' => 'bca', 'BcaC04g19765' => 'bca', 'BcaC09g48432' => 'bca', 'BcaNung07302' => 'bca', 'BolC2t06040H' => 'bol', 'BolC2t07346H' => 'bol', 'BolC3t13817H' => 'bol', 'BolC4t22625H' => 'bol', 'BolC4t23297H' => 'bol', 'BolC8t51278H' => 'bol', 'BolC9t58050H' => 'bol', 'BolC9t58051H' => 'bol', 'BolC9t60163H' => 'bol', 'BraA02t04712Z' => 'bra', 'BraA02t05791Z' => 'bra', 'BraA03t10483Z' => 'bra', 'BraA05t19795Z' => 'bra', 'BraA05t20276Z' => 'bra', 'BraA09t40827Z' => 'bra', 'BraA10t43750Z' => 'bra', 'BraA10t43751Z' => 'bra', 'BraA10t45370Z' => 'bra', 'C02p00400' => 'bna', 'C02p12460' => 'bna', 'C03p13680' => 'bna', 'C04p10270' => 'bna', 'C04p17500' => 'bna', 'C08p37010' => 'bna', 'C09p51880' => 'bna', 'C09p51890' => 'bna', 'C09p74300' => 'bna', 'CAN.G179.26' => 'can', 'CAN.G3384.1' => 'can', 'CAN.G394.68' => 'can', 'CAN.G907.13' => 'can', 'CANSAT11G0012' => 'cansat', 'CANSAT25G1586' => 'cansat', 'CANSAT35G0735' => 'cansat', 'CANSAT54G0556' => 'cansat', 'CANSAT64G0356' => 'cansat', 'CANSAT78G2042' => 'cansat', 'CARHR125920' => 'chi', 'CARHR131910' => 'chi', 'CARHR172390' => 'chi', 'CARHR211140' => 'chi', 'CARHR285850' => 'chi', 'CARHR285860' => 'chi', 'Carub.0004s1347' => 'cru', 'Carub.0004s1960' => 'cru', 'Carub.0005s2880' => 'cru', 'Carub.0006s0107' => 'cru', 'Carub.0008s2015' => 'cru', 'Carub.0008s2016' => 'cru', 'Carub.0008s2017' => 'cru', 'Ca_01315_v3' => 'car', 'Ca_05063_v3' => 'car', 'Ca_10231_v3' => 'car', 'Ca_10913_v3' => 'car', 'Ca_19156_v3' => 'car', 'Ca_23644_v3' => 'car', 'Ca_26735_v3' => 'car', 'Cc01_g13130' => 'ccan', 'Cc02_g21690' => 'ccan', 'Cc03_g03600' => 'ccan', 'Cc06_g02510' => 'ccan', 'CDE02G1265' => 'cde', 'CDE05G0415' => 'cde', 'CDE08G1082' => 'cde', 'Cfa005780' => 'cfa', 'Cfa011522' => 'cfa', 'Cfa011523' => 'cfa', 'Cfa015627' => 'cfa', 'Cfa017359' => 'cfa', 'Ciclev10005687m.g' => 'ccl', 'Ciclev10012173m.g' => 'ccl', 'Ciclev10021621m.g' => 'ccl', 'Ciclev10028968m.g' => 'ccl', 'Ciclev10029907m.g' => 'ccl', 'CiPaw.01G164800' => 'cil', 'CiPaw.07G083700' => 'cil', 'CiPaw.07G127000' => 'cil', 'CiPaw.07G136900' => 'cil', 'CiPaw.08G081700' => 'cil', 'CiPaw.09G194600' => 'cil', 'CiPaw.10G146500' => 'cil', 'CiPaw.13G091500' => 'cil', 'CiPaw.13G091600' => 'cil', 'ClCG00G003390' => 'cla', 'ClCG01G007220' => 'cla', 'ClCG03G001370' => 'cla', 'ClCG04G008100' => 'cla', 'ClCG06G006110' => 'cla', 'ClCG06G006130' => 'cla', 'ClCG10G021210' => 'cla', 'COL.COLO4_07648' => 'col', 'COL.COLO4_07650' => 'col', 'COL.COLO4_07651' => 'col', 'COL.COLO4_14780' => 'col', 'COL.COLO4_18546' => 'col', 'COL.COLO4_18547' => 'col', 'COL.COLO4_23103' => 'col', 'COL.COLO4_30419' => 'col', 'COL.COLO4_34232' => 'col', 'Cpa.g.sc169.20' => 'cpa', 'Cpa.g.sc57.45' => 'cpa', 'Cpa.g.sc58.124' => 'cpa', 'Cpa.g.sc58.125' => 'cpa', 'Cpa.g.sc81.118' => 'cpa', 'Cpa.g.sc81.119' => 'cpa', 'Cre12.g524700' => 'cre', 'CsaV3_1G034430' => 'csa', 'CsaV3_1G034440' => 'csa', 'CsaV3_1G034450' => 'csa', 'CsaV3_3G034830' => 'csa', 'CsaV3_4G025090' => 'csa', 'CsaV3_5G018660' => 'csa', 'CsaV3_6G038160' => 'csa', 'CSS0003447' => 'camsi', 'CSS0017840' => 'camsi', 'CSS0019260' => 'camsi', 'CSS0040375' => 'camsi', 'CSS0042533' => 'camsi', 'DCAR_005960' => 'dca', 'DCAR_012104' => 'dca', 'DCAR_012105' => 'dca', 'DCAR_012293' => 'dca', 'DCAR_015632' => 'dca', 'DCAR_024602' => 'dca', 'DCAR_028752' => 'dca', 'Dinv06261' => 'din', 'Dinv13982' => 'din', 'Dinv17029' => 'din', 'Dinv18463' => 'din', 'Dinv33181' => 'din', 'Dinv35585' => 'din', 'Dinv37161' => 'din', 'Dinv42977' => 'din', 'Dinv43122' => 'din', 'Dinv44517' => 'din', 'Duzib093G0256' => 'dzi', 'Duzib106G1254' => 'dzi', 'Duzib128G1789' => 'dzi', 'Duzib133G0633' => 'dzi', 'Duzib138G0510' => 'dzi', 'Duzib150G1084' => 'dzi', 'Duzib168G0488' => 'dzi', 'Duzib168G1523' => 'dzi', 'Duzib170G0133' => 'dzi', 'ECA234G1433' => 'eca', 'ECA236G1432' => 'eca', 'ECA236G2256' => 'eca', 'ECA236G2365' => 'eca', 'ECA236G4830' => 'eca', 'ECA248G1505' => 'eca', 'EL10Ac3g06431' => 'bvu', 'EL10Ac5g12577' => 'bvu', 'EL10Ac6g13533' => 'bvu', 'EL10Ac7g16045' => 'bvu', 'Eucgr.A01281' => 'egr', 'Eucgr.B02326' => 'egr', 'Eucgr.H03532' => 'egr', 'Eucgr.K00553' => 'egr', 'Eucgr.K03116' => 'egr', 'FAN02G3963' => 'fan', 'FAN05G0438' => 'fan', 'FAN09G2434' => 'fan', 'FAN12G3984' => 'fan', 'FAN14G0798' => 'fan', 'FAN17G0652' => 'fan', 'FAN19G1988' => 'fan', 'FAN22G0632' => 'fan', 'FAN23G0387' => 'fan', 'FAN26G1323' => 'fan', 'FAN28G0666' => 'fan', 'FvH4_1g26080' => 'fve', 'FvH4_3g36780' => 'fve', 'FvH4_4g15270' => 'fve', 'FvH4_6g13490' => 'fve', 'Glyma.01G098700' => 'gma', 'Glyma.03G065900' => 'gma', 'Glyma.03G073754' => 'gma', 'Glyma.03G073758' => 'gma', 'Glyma.03G083200' => 'gma', 'Glyma.03G225500' => 'gma', 'Glyma.05G037766' => 'gma', 'Glyma.07G133500' => 'gma', 'Glyma.10G139400' => 'gma', 'Glyma.10G248900' => 'gma', 'Glyma.11G137800' => 'gma', 'Glyma.12G061300' => 'gma', 'Glyma.13G337900' => 'gma', 'Glyma.15G036600' => 'gma', 'Glyma.18G182800' => 'gma', 'Glyma.19G222500' => 'gma', 'Glyma.20G144800' => 'gma', 'Gohir.A01G222000' => 'ghi', 'Gohir.A03G044000' => 'ghi', 'Gohir.A03G044100' => 'ghi', 'Gohir.A04G083100' => 'ghi', 'Gohir.A07G127200' => 'ghi', 'Gohir.A07G132400' => 'ghi', 'Gohir.A08G000700' => 'ghi', 'Gohir.A11G327300' => 'ghi', 'Gohir.D01G211500' => 'ghi', 'Gohir.D03G123400' => 'ghi', 'Gohir.D03G123500' => 'ghi', 'Gohir.D04G121800' => 'ghi', 'Gohir.D07G131500' => 'ghi', 'Gohir.D07G136600' => 'ghi', 'Gohir.D08G011600' => 'ghi', 'Gohir.D11G346200' => 'ghi', 'Gorai.001G142800' => 'gra', 'Gorai.001G148700' => 'gra', 'Gorai.002G257300' => 'gra', 'Gorai.003G130000' => 'gra', 'Gorai.003G130100' => 'gra', 'Gorai.004G005300' => 'gra', 'Gorai.007G376500' => 'gra', 'Gorai.012G104700' => 'gra', 'GSVIVG01017946001' => 'vvi', 'GSVIVG01024928001' => 'vvi', 'GSVIVG01028227001' => 'vvi', 'GSVIVG01034151001' => 'vvi', 'HanXRQChr05g0135031' => 'han', 'HanXRQChr05g0135041' => 'han', 'HanXRQChr05g0140021' => 'han', 'HanXRQChr06g0178981' => 'han', 'HanXRQChr07g0188251' => 'han', 'HanXRQChr08g0235311' => 'han', 'HanXRQChr09g0271011' => 'han', 'HanXRQChr10g0293321' => 'han', 'HanXRQChr13g0388171' => 'han', 'Haze_00916' => 'cav', 'Haze_05063' => 'cav', 'Haze_20814' => 'cav', 'Haze_24128' => 'cav', 'Hma1.2p1_0745F.1_g212010' => 'hma', 'Hma1.2p1_0757F.1_g213260' => 'hma', 'Hma1.2p1_0936F.1_g238840' => 'hma', 'Hma1.2p1_1735F.1_g299890' => 'hma', 'Hma1.2p1_1861F.1_g305685' => 'hma', 'HPP92_003397' => 'vpl', 'HPP92_012597' => 'vpl', 'HPP92_015520' => 'vpl', 'HPP92_015539' => 'vpl', 'HPP92_020373' => 'vpl', 'Hund04938' => 'sun', 'Hund10677' => 'sun', 'Hund11033' => 'sun', 'Hund12155' => 'sun', 'Lalb_Chr01g0022551' => 'lal', 'Lalb_Chr03g0042341' => 'lal', 'Lalb_Chr07g0192931' => 'lal', 'Lalb_Chr12g0209551' => 'lal', 'Lalb_Chr19g0125251' => 'lal', 'Lalb_Chr19g0137891' => 'lal', 'Lalb_Chr21g0304641' => 'lal', 'Lalb_Chr21g0309881' => 'lal', 'Lj1A5T12' => 'lonja', 'Lj1C148G10' => 'lonja', 'Lj2A93T83' => 'lonja', 'Lj3A738G68' => 'lonja', 'Lj3C966T1' => 'lonja', 'Lj3g0018958' => 'lja', 'Lj3g0021831' => 'lja', 'Lj3g0025443' => 'lja', 'Lj4g0026809' => 'lja', 'Lj5g0012558' => 'lja', 'Lj5g0021586' => 'lja', 'Lsat_1_v5_gn_5_156840' => 'lsa', 'Lsat_1_v5_gn_8_73460' => 'lsa', 'Lsat_1_v5_gn_8_73481' => 'lsa', 'Lsat_1_v5_gn_9_31601' => 'lsa', 'Lsat_1_v5_gn_9_77320' => 'lsa', 'Manes.01G171300' => 'mes', 'Manes.01G171400' => 'mes', 'Manes.01G236100' => 'mes', 'Manes.02G130500' => 'mes', 'Manes.02G130600' => 'mes', 'Manes.03G180200' => 'mes', 'Manes.05G007000' => 'mes', 'Manes.08G084400' => 'mes', 'Manes.09G092600' => 'mes', 'Manes.15G027900' => 'mes', 'MBI04_g40948_MAGBIO' => 'mbi', 'MBI14_g12123_MAGBIO' => 'mbi', 'MBI18_g28915_MAGBIO' => 'mbi', 'MCO09G053' => 'mco', 'MCO11G782' => 'mco', 'MCO15G215' => 'mco', 'MD03G1088500' => 'mdo', 'MD03G1088600' => 'mdo', 'MD04G1130800' => 'mdo', 'MD09G1291700' => 'mdo', 'MD11G1097500' => 'mdo', 'MD11G1097600' => 'mdo', 'MD12G1143900' => 'mdo', 'MD13G1191400' => 'mdo', 'MD16G1191500' => 'mdo', 'Medtr1g085570' => 'mtr', 'Medtr1g104610' => 'mtr', 'Medtr2g097520' => 'mtr', 'Medtr4g021800' => 'mtr', 'Medtr4g021825' => 'mtr', 'Medtr4g064270' => 'mtr', 'Medtr4g064380' => 'mtr', 'Medtr7g062150' => 'mtr', 'MELO3C003138.2' => 'cme', 'MELO3C005187.2' => 'cme', 'MELO3C009252.2' => 'cme', 'MELO3C014481.2' => 'cme', 'MELO3C020616.2' => 'cme', 'MELO3C020617.2' => 'cme', 'MELO3C020618.2' => 'cme', 'Migut.G00328' => 'egut', 'Migut.J00320' => 'egut', 'Migut.L01000' => 'egut', 'Migut.L01953' => 'egut', 'MSTRG.10253' => 'ama', 'MSTRG.19077' => 'ama', 'MSTRG.26780' => 'ama', 'MSTRG.4023' => 'ama', 'MSTRG.5655' => 'ama', 'MSTRG.9992' => 'ama', 'Nitab4.5_0000043g0310' => 'nta', 'Nitab4.5_0000463g0080' => 'nta', 'Nitab4.5_0000705g0170' => 'nta', 'Nitab4.5_0001326g0060' => 'nta', 'Nitab4.5_0001628g0030' => 'nta', 'Nitab4.5_0002103g0110' => 'nta', 'Nitab4.5_0002946g0030' => 'nta', 'Nitab4.5_0004639g0030' => 'nta', 'Nn2g11149' => 'nnu', 'Nn2g13389' => 'nnu', 'Nn4g25326' => 'nnu', 'Nn4g26290' => 'nnu', 'Nn5g29865' => 'nnu', 'Oeu004163.1' => 'oeu', 'Oeu006901.1' => 'oeu', 'Oeu010096.1' => 'oeu', 'Oeu024340.1' => 'oeu', 'Oeu048369.1' => 'oeu', 'Os01g0973000' => 'osa', 'Os03g0273800' => 'osa', 'Os03g0701200' => 'osa', 'Os03g0834050' => 'osa', 'Os07g0634400' => 'osa', 'Peaxi162Scf00092g01414' => 'pax', 'Peaxi162Scf00165g00818' => 'pax', 'Peaxi162Scf00309g00516' => 'pax', 'Peaxi162Scf00774g00218' => 'pax', 'PGR004G1824' => 'pgr', 'PGR004G2606' => 'pgr', 'PGR031G2716' => 'pgr', 'PGR102G2460' => 'pgr', 'PGR142G2599' => 'pgr', 'PGSC0003DMG400000843' => 'stu', 'PGSC0003DMG400008829' => 'stu', 'PGSC0003DMG400030418' => 'stu', 'PGSC0003DMG400031834' => 'stu', 'PGSC0003DMG401028300' => 'stu', 'PGSC0003DMG402028300' => 'stu', 'Phvul.001G219300' => 'pvu', 'Phvul.007G056000' => 'pvu', 'Phvul.007G208000' => 'pvu', 'Phvul.008G119500' => 'pvu', 'Phvul.010G011200' => 'pvu', 'Phvul.010G014800' => 'pvu', 'Phvul.011G062900' => 'pvu', 'Phvul.L007043' => 'pvu', 'Potri.001G242300' => 'ptr', 'Potri.002G185300' => 'ptr', 'Potri.006G086900' => 'ptr', 'Potri.008G151700' => 'ptr', 'Potri.009G033500' => 'ptr', 'Potri.010G089300' => 'ptr', 'Potri.014G110800' => 'ptr', 'Pp3c27_8130' => 'ppa', 'Pp3c6_27410' => 'ppa', 'PRCOL_00001659' => 'pco', 'PRCOL_00001927' => 'pco', 'PRCOL_00003649' => 'pco', 'Prupe.1G011600' => 'ppe', 'Prupe.3G000800' => 'ppe', 'Prupe.3G001100' => 'ppe', 'Prupe.6G072700' => 'ppe', 'Prupe.6G072800' => 'ppe', 'Prupe.6G257300' => 'ppe', 'Prupe.8G033000' => 'ppe', 'Psat0s2633g0080' => 'psa', 'Psat0s3396g0080' => 'psa', 'Psat0s3396g0200' => 'psa', 'Psat3g139080' => 'psa', 'Psat5g285080' => 'psa', 'Psat6g157760' => 'psa', 'Psat6g208440' => 'psa', 'Psat7g215320' => 'psa', 'Psat7g215400' => 'psa', 'Psat7g235600' => 'psa', 'Psat7g235760' => 'psa', 'PSO063G4603' => 'pso', 'PSO210G0182' => 'pso', 'PSO210G0196' => 'pso', 'PSO339G0394' => 'pso', 'PSO339G4127' => 'pso', 'PSO513G0064' => 'pso', 'PSO761G0079' => 'pso', 'QL01p031003' => 'qlo', 'QL01p031078' => 'qlo', 'QL06p003004' => 'qlo', 'QL07p048731' => 'qlo', 'QL09p037427' => 'qlo', 'RcHm_v2.0_Chr3g0466361' => 'rch', 'RcHm_v2.0_Chr3g0485571' => 'rch', 'RcHm_v2.0_Chr4g0416551' => 'rch', 'RcHm_v2.0_Chr5g0065831' => 'rch', 'Rhsim01G0230500' => 'rsi', 'Rhsim05G0194000' => 'rsi', 'Rhsim08G0250400' => 'rsi', 'Sabra02G0131000' => 'sbr', 'Sabra06G0066300' => 'sbr', 'Sabra08G0115500' => 'sbr', 'Sabra09G0023900' => 'sbr', 'Sabra10G0054000' => 'sbr', 'Sabra14G0081500' => 'sbr', 'Sabra16G0147100' => 'sbr', 'SalBow2G2957' => 'sbo', 'SalBow4G3320' => 'sbo', 'SalBow8G1894' => 'sbo', 'Sc07g0007950' => 'sci', 'Sc12g0001360' => 'sci', 'Sc13g0004330' => 'sci', 'Sc20g0005010' => 'sci', 'Sed0000361' => 'sed', 'Sed0001706' => 'sed', 'Sed0002422' => 'sed', 'Sed0004029' => 'sed', 'Sed0004602' => 'sed', 'Sed0004943' => 'sed', 'Sed0008646' => 'sed', 'Sed0023313' => 'sed', 'Sed0024843' => 'sed', 'SEGI_00081' => 'sgi', 'SEGI_00947' => 'sgi', 'SEGI_04046' => 'sgi', 'SEGI_06880' => 'sgi', 'SEGI_09736' => 'sgi', 'SEGI_12741' => 'sgi', 'SEGI_14530' => 'sgi', 'SEGI_20705' => 'sgi', 'SEGI_26088' => 'sgi', 'SEGI_28323' => 'sgi', 'SEGI_33343' => 'sgi', 'SGA_v2.0_scaffold126G33775' => 'sas', 'SGA_v2.0_scaffold2G01337' => 'sas', 'SGA_v2.0_scaffold38G15006' => 'sas', 'SGA_v2.0_scaffold39G15264' => 'sas', 'SGA_v2.0_scaffold453G51880' => 'sas', 'SHI12696' => 'shi', 'SMO367G1096' => 'smo', 'Solyc01g068630.3' => 'sly', 'Solyc05g011880.3' => 'sly', 'Solyc06g076300.3' => 'sly', 'Solyc09g010940.4' => 'sly', 'Solyc09g075890.3' => 'sly', 'Sopen01g030560' => 'spe', 'Sopen05g006630' => 'spe', 'Sopen06g032720' => 'spe', 'Sopen09g005660' => 'spe', 'Sopen09g030690' => 'spe', 'Sp4g14540' => 'spa', 'Sp4g20030' => 'spa', 'Sp5g01320' => 'spa', 'Sp6g21170' => 'spa', 'Sp6g21180' => 'spa', 'Sp6g21190' => 'spa', 'Sp6g40220' => 'spa', 'TAR362G0122' => 'tar', 'TAR362G1338' => 'tar', 'TAR369G0590' => 'tar', 'TAR371G0824' => 'tar', 'TAR622G1429' => 'tar', 'TAR623G0734' => 'tar', 'TAR625G0441' => 'tar', 'TAR629G0976' => 'tar', 'TAR633G1195' => 'tar', 'TAR636G2660' => 'tar', 'THA.LOC104799440' => 'tha', 'THA.LOC104800966' => 'tha', 'THA.LOC104806559' => 'tha', 'THA.LOC104810765' => 'tha', 'THA.LOC104816266' => 'tha', 'THA.LOC104817419' => 'tha', 'THA.LOC104827021' => 'tha', 'Thecc.01G327400' => 'tca', 'Thecc.04G229200' => 'tca', 'Thecc.05G037400' => 'tca', 'Thecc.09G318600' => 'tca', 'Thecc.09G318700' => 'tca', 'Thhalv10006238m.g' => 'esa', 'Thhalv10014321m.g' => 'esa', 'Thhalv10014335m.g' => 'esa', 'Thhalv10015826m.g' => 'esa', 'Thhalv10017107m.g' => 'esa', 'Thhalv10017180m.g' => 'esa', 'Thhalv10029339m.g' => 'esa', 'TPR.G1699' => 'tpr', 'TPR.G23609' => 'tpr', 'TPR.G3081' => 'tpr', 'TPR.G40397' => 'tpr', 'TPR.G5522' => 'tpr', 'TPR.G5618' => 'tpr', 'TPR.G5626' => 'tpr', 'TWI09G1632' => 'twi', 'TWI23G1230' => 'twi', 'TWI53G1064' => 'twi', 'TWI59G0751' => 'twi', 'TWI74G0947' => 'twi', 'TWI77G0337' => 'twi', 'TWI79G1254' => 'twi', 'unitig_0.g2341' => 'ugi', 'unitig_26.g10006' => 'ugi', 'unitig_26.g10008' => 'ugi', 'unitig_26.g9192' => 'ugi', 'vmacro14547' => 'vma', 'vmacro15333' => 'vma', 'vmacro18743' => 'vma', 'vmacro20166' => 'vma', 'VMungo0331G0523' => 'vmu', 'VMungo0331G1202' => 'vmu', 'VMungo0720G1228' => 'vmu', 'VMungo0720G1514' => 'vmu', 'VMungo1080G0169' => 'vmu', 'VMungo1127G1475' => 'vmu', 'VMungo1383G1208' => 'vmu', 'VMungo1383G1698' => 'vmu', 'Zm00001eb012270' => 'zma', 'Zm00001eb054100' => 'zma', 'Zm00001eb063350' => 'zma', 'Zm00001eb328560' => 'zma', 'Zm00001eb342820' => 'zma', 'Zm00001eb362210' => 'zma', 'Zm00001eb397730' => 'zma', 'Zm00001eb399750' => 'zma' ) $gf_id = 'HOM05D000959' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000959' ) $data_identifier = 'HOM05D000959' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 5, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 5, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 10, 'mbi' => (int) 3, 'mco' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 2, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 3, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 11, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399750' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000959', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '622', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p07100' => 'bna', 'A03p11720' => 'bna', 'A05p08300' => 'bna', 'A05p13380' => 'bna', 'A09p54130' => 'bna', 'A10p16690' => 'bna', 'A10p16700' => 'bna', 'A10p33390' => 'bna', 'Aa31LG10G16020' => 'aar', 'Aa31LG1G11810' => 'aar', 'Aa31LG1G11830' => 'aar', 'Aa31LG1G22510' => 'aar', 'Aa31LG5G4890' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5793' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2310' => 'aag', 'Actinidia08499' => 'ach', 'Actinidia11262' => 'ach', 'Actinidia23926' => 'ach', 'Actinidia34420' => 'ach', 'Actinidia36970' => 'ach', 'Ah.02g111220' => 'amhyb', 'Ah.15g097750' => 'amhyb', 'AL4G27500' => 'aly', 'AL6G11470' => 'aly', 'AL8G35950' => 'aly', 'AL8G35960' => 'aly', 'AL8G35970' => 'aly', 'Aqoxy1G00912' => 'aox', 'Aqoxy2G02253' => 'aox', 'Aqoxy2G02411' => 'aox', 'Aqoxy5G00485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BZ66YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K8ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM4FUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6BF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HFV7XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25JBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0YNNV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MAKK6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P70IT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP2Z6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V61LZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YWP64R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3S9AI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7PGHH' => 'arhy', 'AT2G32150' => 'ath', 'AT3G62040' => 'ath', 'AT5G02230' => 'ath', 'AT5G59480' => 'ath', 'AT5G59490' => 'ath', 'ATR0332G060' => 'atr', 'ATR0559G190' => 'atr', 'ATR0693G294' => 'atr', 'Atru.chr3.3975' => 'acertr', 'Atru.chr3.3976' => 'acertr', 'Atru.chr3.3977' => 'acertr', 'Atru.chr4.2498' => 'acertr', 'Atru.chr5.838' => 'acertr', 'Atru.chr8.1990' => 'acertr', 'Atru.chr8.1991' => 'acertr', 'Atru.chr8.1992' => 'acertr', 'AUR62001759' => 'cqu', 'AUR62009545' => 'cqu', 'AUR62010474' => 'cqu', 'AUR62025820' => 'cqu', 'AUR62030422' => 'cqu', 'AUR62033605' => 'cqu', 'AUR62038615' => 'cqu', 'AUR62041347' => 'cqu', 'BcaB01g04574' => 'bca', 'BcaB02g09263' => 'bca', 'BcaB02g10453' => 'bca', 'BcaB05g22513' => 'bca', 'BcaB08g36253' => 'bca', 'BcaB08g36254' => 'bca', 'BcaC01g06519' => 'bca', 'BcaC02g11889' => 'bca', 'BcaC03g14010' => 'bca', 'BcaC03g18439' => 'bca', 'BcaC04g19765' => 'bca', 'BcaC09g48432' => 'bca', 'BcaNung07302' => 'bca', 'BolC2t06040H' => 'bol', 'BolC2t07346H' => 'bol', 'BolC3t13817H' => 'bol', 'BolC4t22625H' => 'bol', 'BolC4t23297H' => 'bol', 'BolC8t51278H' => 'bol', 'BolC9t58050H' => 'bol', 'BolC9t58051H' => 'bol', 'BolC9t60163H' => 'bol', 'BraA02t04712Z' => 'bra', 'BraA02t05791Z' => 'bra', 'BraA03t10483Z' => 'bra', 'BraA05t19795Z' => 'bra', 'BraA05t20276Z' => 'bra', 'BraA09t40827Z' => 'bra', 'BraA10t43750Z' => 'bra', 'BraA10t43751Z' => 'bra', 'BraA10t45370Z' => 'bra', 'C02p00400' => 'bna', 'C02p12460' => 'bna', 'C03p13680' => 'bna', 'C04p10270' => 'bna', 'C04p17500' => 'bna', 'C08p37010' => 'bna', 'C09p51880' => 'bna', 'C09p51890' => 'bna', 'C09p74300' => 'bna', 'CAN.G179.26' => 'can', 'CAN.G3384.1' => 'can', 'CAN.G394.68' => 'can', 'CAN.G907.13' => 'can', 'CANSAT11G0012' => 'cansat', 'CANSAT25G1586' => 'cansat', 'CANSAT35G0735' => 'cansat', 'CANSAT54G0556' => 'cansat', 'CANSAT64G0356' => 'cansat', 'CANSAT78G2042' => 'cansat', 'CARHR125920' => 'chi', 'CARHR131910' => 'chi', 'CARHR172390' => 'chi', 'CARHR211140' => 'chi', 'CARHR285850' => 'chi', 'CARHR285860' => 'chi', 'Carub.0004s1347' => 'cru', 'Carub.0004s1960' => 'cru', 'Carub.0005s2880' => 'cru', 'Carub.0006s0107' => 'cru', 'Carub.0008s2015' => 'cru', 'Carub.0008s2016' => 'cru', 'Carub.0008s2017' => 'cru', 'Ca_01315_v3' => 'car', 'Ca_05063_v3' => 'car', 'Ca_10231_v3' => 'car', 'Ca_10913_v3' => 'car', 'Ca_19156_v3' => 'car', 'Ca_23644_v3' => 'car', 'Ca_26735_v3' => 'car', 'Cc01_g13130' => 'ccan', 'Cc02_g21690' => 'ccan', 'Cc03_g03600' => 'ccan', 'Cc06_g02510' => 'ccan', 'CDE02G1265' => 'cde', 'CDE05G0415' => 'cde', 'CDE08G1082' => 'cde', 'Cfa005780' => 'cfa', 'Cfa011522' => 'cfa', 'Cfa011523' => 'cfa', 'Cfa015627' => 'cfa', 'Cfa017359' => 'cfa', 'Ciclev10005687m.g' => 'ccl', 'Ciclev10012173m.g' => 'ccl', 'Ciclev10021621m.g' => 'ccl', 'Ciclev10028968m.g' => 'ccl', 'Ciclev10029907m.g' => 'ccl', 'CiPaw.01G164800' => 'cil', 'CiPaw.07G083700' => 'cil', 'CiPaw.07G127000' => 'cil', 'CiPaw.07G136900' => 'cil', 'CiPaw.08G081700' => 'cil', 'CiPaw.09G194600' => 'cil', 'CiPaw.10G146500' => 'cil', 'CiPaw.13G091500' => 'cil', 'CiPaw.13G091600' => 'cil', 'ClCG00G003390' => 'cla', 'ClCG01G007220' => 'cla', 'ClCG03G001370' => 'cla', 'ClCG04G008100' => 'cla', 'ClCG06G006110' => 'cla', 'ClCG06G006130' => 'cla', 'ClCG10G021210' => 'cla', 'COL.COLO4_07648' => 'col', 'COL.COLO4_07650' => 'col', 'COL.COLO4_07651' => 'col', 'COL.COLO4_14780' => 'col', 'COL.COLO4_18546' => 'col', 'COL.COLO4_18547' => 'col', 'COL.COLO4_23103' => 'col', 'COL.COLO4_30419' => 'col', 'COL.COLO4_34232' => 'col', 'Cpa.g.sc169.20' => 'cpa', 'Cpa.g.sc57.45' => 'cpa', 'Cpa.g.sc58.124' => 'cpa', 'Cpa.g.sc58.125' => 'cpa', 'Cpa.g.sc81.118' => 'cpa', 'Cpa.g.sc81.119' => 'cpa', 'Cre12.g524700' => 'cre', 'CsaV3_1G034430' => 'csa', 'CsaV3_1G034440' => 'csa', 'CsaV3_1G034450' => 'csa', 'CsaV3_3G034830' => 'csa', 'CsaV3_4G025090' => 'csa', 'CsaV3_5G018660' => 'csa', 'CsaV3_6G038160' => 'csa', 'CSS0003447' => 'camsi', 'CSS0017840' => 'camsi', 'CSS0019260' => 'camsi', 'CSS0040375' => 'camsi', 'CSS0042533' => 'camsi', 'DCAR_005960' => 'dca', 'DCAR_012104' => 'dca', 'DCAR_012105' => 'dca', 'DCAR_012293' => 'dca', 'DCAR_015632' => 'dca', 'DCAR_024602' => 'dca', 'DCAR_028752' => 'dca', 'Dinv06261' => 'din', 'Dinv13982' => 'din', 'Dinv17029' => 'din', 'Dinv18463' => 'din', 'Dinv33181' => 'din', 'Dinv35585' => 'din', 'Dinv37161' => 'din', 'Dinv42977' => 'din', 'Dinv43122' => 'din', 'Dinv44517' => 'din', 'Duzib093G0256' => 'dzi', 'Duzib106G1254' => 'dzi', 'Duzib128G1789' => 'dzi', 'Duzib133G0633' => 'dzi', 'Duzib138G0510' => 'dzi', 'Duzib150G1084' => 'dzi', 'Duzib168G0488' => 'dzi', 'Duzib168G1523' => 'dzi', 'Duzib170G0133' => 'dzi', 'ECA234G1433' => 'eca', 'ECA236G1432' => 'eca', 'ECA236G2256' => 'eca', 'ECA236G2365' => 'eca', 'ECA236G4830' => 'eca', 'ECA248G1505' => 'eca', 'EL10Ac3g06431' => 'bvu', 'EL10Ac5g12577' => 'bvu', 'EL10Ac6g13533' => 'bvu', 'EL10Ac7g16045' => 'bvu', 'Eucgr.A01281' => 'egr', 'Eucgr.B02326' => 'egr', 'Eucgr.H03532' => 'egr', 'Eucgr.K00553' => 'egr', 'Eucgr.K03116' => 'egr', 'FAN02G3963' => 'fan', 'FAN05G0438' => 'fan', 'FAN09G2434' => 'fan', 'FAN12G3984' => 'fan', 'FAN14G0798' => 'fan', 'FAN17G0652' => 'fan', 'FAN19G1988' => 'fan', 'FAN22G0632' => 'fan', 'FAN23G0387' => 'fan', 'FAN26G1323' => 'fan', 'FAN28G0666' => 'fan', 'FvH4_1g26080' => 'fve', 'FvH4_3g36780' => 'fve', 'FvH4_4g15270' => 'fve', 'FvH4_6g13490' => 'fve', 'Glyma.01G098700' => 'gma', 'Glyma.03G065900' => 'gma', 'Glyma.03G073754' => 'gma', 'Glyma.03G073758' => 'gma', 'Glyma.03G083200' => 'gma', 'Glyma.03G225500' => 'gma', 'Glyma.05G037766' => 'gma', 'Glyma.07G133500' => 'gma', 'Glyma.10G139400' => 'gma', 'Glyma.10G248900' => 'gma', 'Glyma.11G137800' => 'gma', 'Glyma.12G061300' => 'gma', 'Glyma.13G337900' => 'gma', 'Glyma.15G036600' => 'gma', 'Glyma.18G182800' => 'gma', 'Glyma.19G222500' => 'gma', 'Glyma.20G144800' => 'gma', 'Gohir.A01G222000' => 'ghi', 'Gohir.A03G044000' => 'ghi', 'Gohir.A03G044100' => 'ghi', 'Gohir.A04G083100' => 'ghi', 'Gohir.A07G127200' => 'ghi', 'Gohir.A07G132400' => 'ghi', 'Gohir.A08G000700' => 'ghi', 'Gohir.A11G327300' => 'ghi', 'Gohir.D01G211500' => 'ghi', 'Gohir.D03G123400' => 'ghi', 'Gohir.D03G123500' => 'ghi', 'Gohir.D04G121800' => 'ghi', 'Gohir.D07G131500' => 'ghi', 'Gohir.D07G136600' => 'ghi', 'Gohir.D08G011600' => 'ghi', 'Gohir.D11G346200' => 'ghi', 'Gorai.001G142800' => 'gra', 'Gorai.001G148700' => 'gra', 'Gorai.002G257300' => 'gra', 'Gorai.003G130000' => 'gra', 'Gorai.003G130100' => 'gra', 'Gorai.004G005300' => 'gra', 'Gorai.007G376500' => 'gra', 'Gorai.012G104700' => 'gra', 'GSVIVG01017946001' => 'vvi', 'GSVIVG01024928001' => 'vvi', 'GSVIVG01028227001' => 'vvi', 'GSVIVG01034151001' => 'vvi', 'HanXRQChr05g0135031' => 'han', 'HanXRQChr05g0135041' => 'han', 'HanXRQChr05g0140021' => 'han', 'HanXRQChr06g0178981' => 'han', 'HanXRQChr07g0188251' => 'han', 'HanXRQChr08g0235311' => 'han', 'HanXRQChr09g0271011' => 'han', 'HanXRQChr10g0293321' => 'han', 'HanXRQChr13g0388171' => 'han', 'Haze_00916' => 'cav', 'Haze_05063' => 'cav', 'Haze_20814' => 'cav', 'Haze_24128' => 'cav', 'Hma1.2p1_0745F.1_g212010' => 'hma', 'Hma1.2p1_0757F.1_g213260' => 'hma', 'Hma1.2p1_0936F.1_g238840' => 'hma', 'Hma1.2p1_1735F.1_g299890' => 'hma', 'Hma1.2p1_1861F.1_g305685' => 'hma', 'HPP92_003397' => 'vpl', 'HPP92_012597' => 'vpl', 'HPP92_015520' => 'vpl', 'HPP92_015539' => 'vpl', 'HPP92_020373' => 'vpl', 'Hund04938' => 'sun', 'Hund10677' => 'sun', 'Hund11033' => 'sun', 'Hund12155' => 'sun', 'Lalb_Chr01g0022551' => 'lal', 'Lalb_Chr03g0042341' => 'lal', 'Lalb_Chr07g0192931' => 'lal', 'Lalb_Chr12g0209551' => 'lal', 'Lalb_Chr19g0125251' => 'lal', 'Lalb_Chr19g0137891' => 'lal', 'Lalb_Chr21g0304641' => 'lal', 'Lalb_Chr21g0309881' => 'lal', 'Lj1A5T12' => 'lonja', 'Lj1C148G10' => 'lonja', 'Lj2A93T83' => 'lonja', 'Lj3A738G68' => 'lonja', 'Lj3C966T1' => 'lonja', 'Lj3g0018958' => 'lja', 'Lj3g0021831' => 'lja', 'Lj3g0025443' => 'lja', 'Lj4g0026809' => 'lja', 'Lj5g0012558' => 'lja', 'Lj5g0021586' => 'lja', 'Lsat_1_v5_gn_5_156840' => 'lsa', 'Lsat_1_v5_gn_8_73460' => 'lsa', 'Lsat_1_v5_gn_8_73481' => 'lsa', 'Lsat_1_v5_gn_9_31601' => 'lsa', 'Lsat_1_v5_gn_9_77320' => 'lsa', 'Manes.01G171300' => 'mes', 'Manes.01G171400' => 'mes', 'Manes.01G236100' => 'mes', 'Manes.02G130500' => 'mes', 'Manes.02G130600' => 'mes', 'Manes.03G180200' => 'mes', 'Manes.05G007000' => 'mes', 'Manes.08G084400' => 'mes', 'Manes.09G092600' => 'mes', 'Manes.15G027900' => 'mes', 'MBI04_g40948_MAGBIO' => 'mbi', 'MBI14_g12123_MAGBIO' => 'mbi', 'MBI18_g28915_MAGBIO' => 'mbi', 'MCO09G053' => 'mco', 'MCO11G782' => 'mco', 'MCO15G215' => 'mco', 'MD03G1088500' => 'mdo', 'MD03G1088600' => 'mdo', 'MD04G1130800' => 'mdo', 'MD09G1291700' => 'mdo', 'MD11G1097500' => 'mdo', 'MD11G1097600' => 'mdo', 'MD12G1143900' => 'mdo', 'MD13G1191400' => 'mdo', 'MD16G1191500' => 'mdo', 'Medtr1g085570' => 'mtr', 'Medtr1g104610' => 'mtr', 'Medtr2g097520' => 'mtr', 'Medtr4g021800' => 'mtr', 'Medtr4g021825' => 'mtr', 'Medtr4g064270' => 'mtr', 'Medtr4g064380' => 'mtr', 'Medtr7g062150' => 'mtr', 'MELO3C003138.2' => 'cme', 'MELO3C005187.2' => 'cme', 'MELO3C009252.2' => 'cme', 'MELO3C014481.2' => 'cme', 'MELO3C020616.2' => 'cme', 'MELO3C020617.2' => 'cme', 'MELO3C020618.2' => 'cme', 'Migut.G00328' => 'egut', 'Migut.J00320' => 'egut', 'Migut.L01000' => 'egut', 'Migut.L01953' => 'egut', 'MSTRG.10253' => 'ama', 'MSTRG.19077' => 'ama', 'MSTRG.26780' => 'ama', 'MSTRG.4023' => 'ama', 'MSTRG.5655' => 'ama', 'MSTRG.9992' => 'ama', 'Nitab4.5_0000043g0310' => 'nta', 'Nitab4.5_0000463g0080' => 'nta', 'Nitab4.5_0000705g0170' => 'nta', 'Nitab4.5_0001326g0060' => 'nta', 'Nitab4.5_0001628g0030' => 'nta', 'Nitab4.5_0002103g0110' => 'nta', 'Nitab4.5_0002946g0030' => 'nta', 'Nitab4.5_0004639g0030' => 'nta', 'Nn2g11149' => 'nnu', 'Nn2g13389' => 'nnu', 'Nn4g25326' => 'nnu', 'Nn4g26290' => 'nnu', 'Nn5g29865' => 'nnu', 'Oeu004163.1' => 'oeu', 'Oeu006901.1' => 'oeu', 'Oeu010096.1' => 'oeu', 'Oeu024340.1' => 'oeu', 'Oeu048369.1' => 'oeu', 'Os01g0973000' => 'osa', 'Os03g0273800' => 'osa', 'Os03g0701200' => 'osa', 'Os03g0834050' => 'osa', 'Os07g0634400' => 'osa', 'Peaxi162Scf00092g01414' => 'pax', 'Peaxi162Scf00165g00818' => 'pax', 'Peaxi162Scf00309g00516' => 'pax', 'Peaxi162Scf00774g00218' => 'pax', 'PGR004G1824' => 'pgr', 'PGR004G2606' => 'pgr', 'PGR031G2716' => 'pgr', 'PGR102G2460' => 'pgr', 'PGR142G2599' => 'pgr', 'PGSC0003DMG400000843' => 'stu', 'PGSC0003DMG400008829' => 'stu', 'PGSC0003DMG400030418' => 'stu', 'PGSC0003DMG400031834' => 'stu', 'PGSC0003DMG401028300' => 'stu', 'PGSC0003DMG402028300' => 'stu', 'Phvul.001G219300' => 'pvu', 'Phvul.007G056000' => 'pvu', 'Phvul.007G208000' => 'pvu', 'Phvul.008G119500' => 'pvu', 'Phvul.010G011200' => 'pvu', 'Phvul.010G014800' => 'pvu', 'Phvul.011G062900' => 'pvu', 'Phvul.L007043' => 'pvu', 'Potri.001G242300' => 'ptr', 'Potri.002G185300' => 'ptr', 'Potri.006G086900' => 'ptr', 'Potri.008G151700' => 'ptr', 'Potri.009G033500' => 'ptr', 'Potri.010G089300' => 'ptr', 'Potri.014G110800' => 'ptr', 'Pp3c27_8130' => 'ppa', 'Pp3c6_27410' => 'ppa', 'PRCOL_00001659' => 'pco', 'PRCOL_00001927' => 'pco', 'PRCOL_00003649' => 'pco', 'Prupe.1G011600' => 'ppe', 'Prupe.3G000800' => 'ppe', 'Prupe.3G001100' => 'ppe', 'Prupe.6G072700' => 'ppe', 'Prupe.6G072800' => 'ppe', 'Prupe.6G257300' => 'ppe', 'Prupe.8G033000' => 'ppe', 'Psat0s2633g0080' => 'psa', 'Psat0s3396g0080' => 'psa', 'Psat0s3396g0200' => 'psa', 'Psat3g139080' => 'psa', 'Psat5g285080' => 'psa', 'Psat6g157760' => 'psa', 'Psat6g208440' => 'psa', 'Psat7g215320' => 'psa', 'Psat7g215400' => 'psa', 'Psat7g235600' => 'psa', 'Psat7g235760' => 'psa', 'PSO063G4603' => 'pso', 'PSO210G0182' => 'pso', 'PSO210G0196' => 'pso', 'PSO339G0394' => 'pso', 'PSO339G4127' => 'pso', 'PSO513G0064' => 'pso', 'PSO761G0079' => 'pso', 'QL01p031003' => 'qlo', 'QL01p031078' => 'qlo', 'QL06p003004' => 'qlo', 'QL07p048731' => 'qlo', 'QL09p037427' => 'qlo', 'RcHm_v2.0_Chr3g0466361' => 'rch', 'RcHm_v2.0_Chr3g0485571' => 'rch', 'RcHm_v2.0_Chr4g0416551' => 'rch', 'RcHm_v2.0_Chr5g0065831' => 'rch', 'Rhsim01G0230500' => 'rsi', 'Rhsim05G0194000' => 'rsi', 'Rhsim08G0250400' => 'rsi', 'Sabra02G0131000' => 'sbr', 'Sabra06G0066300' => 'sbr', 'Sabra08G0115500' => 'sbr', 'Sabra09G0023900' => 'sbr', 'Sabra10G0054000' => 'sbr', 'Sabra14G0081500' => 'sbr', 'Sabra16G0147100' => 'sbr', 'SalBow2G2957' => 'sbo', 'SalBow4G3320' => 'sbo', 'SalBow8G1894' => 'sbo', 'Sc07g0007950' => 'sci', 'Sc12g0001360' => 'sci', 'Sc13g0004330' => 'sci', 'Sc20g0005010' => 'sci', 'Sed0000361' => 'sed', 'Sed0001706' => 'sed', 'Sed0002422' => 'sed', 'Sed0004029' => 'sed', 'Sed0004602' => 'sed', 'Sed0004943' => 'sed', 'Sed0008646' => 'sed', 'Sed0023313' => 'sed', 'Sed0024843' => 'sed', 'SEGI_00081' => 'sgi', 'SEGI_00947' => 'sgi', 'SEGI_04046' => 'sgi', 'SEGI_06880' => 'sgi', 'SEGI_09736' => 'sgi', 'SEGI_12741' => 'sgi', 'SEGI_14530' => 'sgi', 'SEGI_20705' => 'sgi', 'SEGI_26088' => 'sgi', 'SEGI_28323' => 'sgi', 'SEGI_33343' => 'sgi', 'SGA_v2.0_scaffold126G33775' => 'sas', 'SGA_v2.0_scaffold2G01337' => 'sas', 'SGA_v2.0_scaffold38G15006' => 'sas', 'SGA_v2.0_scaffold39G15264' => 'sas', 'SGA_v2.0_scaffold453G51880' => 'sas', 'SHI12696' => 'shi', 'SMO367G1096' => 'smo', 'Solyc01g068630.3' => 'sly', 'Solyc05g011880.3' => 'sly', 'Solyc06g076300.3' => 'sly', 'Solyc09g010940.4' => 'sly', 'Solyc09g075890.3' => 'sly', 'Sopen01g030560' => 'spe', 'Sopen05g006630' => 'spe', 'Sopen06g032720' => 'spe', 'Sopen09g005660' => 'spe', 'Sopen09g030690' => 'spe', 'Sp4g14540' => 'spa', 'Sp4g20030' => 'spa', 'Sp5g01320' => 'spa', 'Sp6g21170' => 'spa', 'Sp6g21180' => 'spa', 'Sp6g21190' => 'spa', 'Sp6g40220' => 'spa', 'TAR362G0122' => 'tar', 'TAR362G1338' => 'tar', 'TAR369G0590' => 'tar', 'TAR371G0824' => 'tar', 'TAR622G1429' => 'tar', 'TAR623G0734' => 'tar', 'TAR625G0441' => 'tar', 'TAR629G0976' => 'tar', 'TAR633G1195' => 'tar', 'TAR636G2660' => 'tar', 'THA.LOC104799440' => 'tha', 'THA.LOC104800966' => 'tha', 'THA.LOC104806559' => 'tha', 'THA.LOC104810765' => 'tha', 'THA.LOC104816266' => 'tha', 'THA.LOC104817419' => 'tha', 'THA.LOC104827021' => 'tha', 'Thecc.01G327400' => 'tca', 'Thecc.04G229200' => 'tca', 'Thecc.05G037400' => 'tca', 'Thecc.09G318600' => 'tca', 'Thecc.09G318700' => 'tca', 'Thhalv10006238m.g' => 'esa', 'Thhalv10014321m.g' => 'esa', 'Thhalv10014335m.g' => 'esa', 'Thhalv10015826m.g' => 'esa', 'Thhalv10017107m.g' => 'esa', 'Thhalv10017180m.g' => 'esa', 'Thhalv10029339m.g' => 'esa', 'TPR.G1699' => 'tpr', 'TPR.G23609' => 'tpr', 'TPR.G3081' => 'tpr', 'TPR.G40397' => 'tpr', 'TPR.G5522' => 'tpr', 'TPR.G5618' => 'tpr', 'TPR.G5626' => 'tpr', 'TWI09G1632' => 'twi', 'TWI23G1230' => 'twi', 'TWI53G1064' => 'twi', 'TWI59G0751' => 'twi', 'TWI74G0947' => 'twi', 'TWI77G0337' => 'twi', 'TWI79G1254' => 'twi', 'unitig_0.g2341' => 'ugi', 'unitig_26.g10006' => 'ugi', 'unitig_26.g10008' => 'ugi', 'unitig_26.g9192' => 'ugi', 'vmacro14547' => 'vma', 'vmacro15333' => 'vma', 'vmacro18743' => 'vma', 'vmacro20166' => 'vma', 'VMungo0331G0523' => 'vmu', 'VMungo0331G1202' => 'vmu', 'VMungo0720G1228' => 'vmu', 'VMungo0720G1514' => 'vmu', 'VMungo1080G0169' => 'vmu', 'VMungo1127G1475' => 'vmu', 'VMungo1383G1208' => 'vmu', 'VMungo1383G1698' => 'vmu', 'Zm00001eb012270' => 'zma', 'Zm00001eb054100' => 'zma', 'Zm00001eb063350' => 'zma', 'Zm00001eb328560' => 'zma', 'Zm00001eb342820' => 'zma', 'Zm00001eb362210' => 'zma', 'Zm00001eb397730' => 'zma', 'Zm00001eb399750' => 'zma' ), 'gf_id' => 'HOM05D000959', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000959' ), 'data_identifier' => 'HOM05D000959', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000959', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '622', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p07100' => 'bna', 'A03p11720' => 'bna', 'A05p08300' => 'bna', 'A05p13380' => 'bna', 'A09p54130' => 'bna', 'A10p16690' => 'bna', 'A10p16700' => 'bna', 'A10p33390' => 'bna', 'Aa31LG10G16020' => 'aar', 'Aa31LG1G11810' => 'aar', 'Aa31LG1G11830' => 'aar', 'Aa31LG1G22510' => 'aar', 'Aa31LG5G4890' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5793' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2310' => 'aag', 'Actinidia08499' => 'ach', 'Actinidia11262' => 'ach', 'Actinidia23926' => 'ach', 'Actinidia34420' => 'ach', 'Actinidia36970' => 'ach', 'Ah.02g111220' => 'amhyb', 'Ah.15g097750' => 'amhyb', 'AL4G27500' => 'aly', 'AL6G11470' => 'aly', 'AL8G35950' => 'aly', 'AL8G35960' => 'aly', 'AL8G35970' => 'aly', 'Aqoxy1G00912' => 'aox', 'Aqoxy2G02253' => 'aox', 'Aqoxy2G02411' => 'aox', 'Aqoxy5G00485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BZ66YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K8ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM4FUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6BF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HFV7XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25JBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0YNNV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MAKK6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P70IT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP2Z6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V61LZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YWP64R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3S9AI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7PGHH' => 'arhy', 'AT2G32150' => 'ath', 'AT3G62040' => 'ath', 'AT5G02230' => 'ath', 'AT5G59480' => 'ath', 'AT5G59490' => 'ath', 'ATR0332G060' => 'atr', 'ATR0559G190' => 'atr', 'ATR0693G294' => 'atr', 'Atru.chr3.3975' => 'acertr', 'Atru.chr3.3976' => 'acertr', 'Atru.chr3.3977' => 'acertr', 'Atru.chr4.2498' => 'acertr', 'Atru.chr5.838' => 'acertr', 'Atru.chr8.1990' => 'acertr', 'Atru.chr8.1991' => 'acertr', 'Atru.chr8.1992' => 'acertr', 'AUR62001759' => 'cqu', 'AUR62009545' => 'cqu', 'AUR62010474' => 'cqu', 'AUR62025820' => 'cqu', 'AUR62030422' => 'cqu', 'AUR62033605' => 'cqu', 'AUR62038615' => 'cqu', 'AUR62041347' => 'cqu', 'BcaB01g04574' => 'bca', 'BcaB02g09263' => 'bca', 'BcaB02g10453' => 'bca', 'BcaB05g22513' => 'bca', 'BcaB08g36253' => 'bca', 'BcaB08g36254' => 'bca', 'BcaC01g06519' => 'bca', 'BcaC02g11889' => 'bca', 'BcaC03g14010' => 'bca', 'BcaC03g18439' => 'bca', 'BcaC04g19765' => 'bca', 'BcaC09g48432' => 'bca', 'BcaNung07302' => 'bca', 'BolC2t06040H' => 'bol', 'BolC2t07346H' => 'bol', 'BolC3t13817H' => 'bol', 'BolC4t22625H' => 'bol', 'BolC4t23297H' => 'bol', 'BolC8t51278H' => 'bol', 'BolC9t58050H' => 'bol', 'BolC9t58051H' => 'bol', 'BolC9t60163H' => 'bol', 'BraA02t04712Z' => 'bra', 'BraA02t05791Z' => 'bra', 'BraA03t10483Z' => 'bra', 'BraA05t19795Z' => 'bra', 'BraA05t20276Z' => 'bra', 'BraA09t40827Z' => 'bra', 'BraA10t43750Z' => 'bra', 'BraA10t43751Z' => 'bra', 'BraA10t45370Z' => 'bra', 'C02p00400' => 'bna', 'C02p12460' => 'bna', 'C03p13680' => 'bna', 'C04p10270' => 'bna', 'C04p17500' => 'bna', 'C08p37010' => 'bna', 'C09p51880' => 'bna', 'C09p51890' => 'bna', 'C09p74300' => 'bna', 'CAN.G179.26' => 'can', 'CAN.G3384.1' => 'can', 'CAN.G394.68' => 'can', 'CAN.G907.13' => 'can', 'CANSAT11G0012' => 'cansat', 'CANSAT25G1586' => 'cansat', 'CANSAT35G0735' => 'cansat', 'CANSAT54G0556' => 'cansat', 'CANSAT64G0356' => 'cansat', 'CANSAT78G2042' => 'cansat', 'CARHR125920' => 'chi', 'CARHR131910' => 'chi', 'CARHR172390' => 'chi', 'CARHR211140' => 'chi', 'CARHR285850' => 'chi', 'CARHR285860' => 'chi', 'Carub.0004s1347' => 'cru', 'Carub.0004s1960' => 'cru', 'Carub.0005s2880' => 'cru', 'Carub.0006s0107' => 'cru', 'Carub.0008s2015' => 'cru', 'Carub.0008s2016' => 'cru', 'Carub.0008s2017' => 'cru', 'Ca_01315_v3' => 'car', 'Ca_05063_v3' => 'car', 'Ca_10231_v3' => 'car', 'Ca_10913_v3' => 'car', 'Ca_19156_v3' => 'car', 'Ca_23644_v3' => 'car', 'Ca_26735_v3' => 'car', 'Cc01_g13130' => 'ccan', 'Cc02_g21690' => 'ccan', 'Cc03_g03600' => 'ccan', 'Cc06_g02510' => 'ccan', 'CDE02G1265' => 'cde', 'CDE05G0415' => 'cde', 'CDE08G1082' => 'cde', 'Cfa005780' => 'cfa', 'Cfa011522' => 'cfa', 'Cfa011523' => 'cfa', 'Cfa015627' => 'cfa', 'Cfa017359' => 'cfa', 'Ciclev10005687m.g' => 'ccl', 'Ciclev10012173m.g' => 'ccl', 'Ciclev10021621m.g' => 'ccl', 'Ciclev10028968m.g' => 'ccl', 'Ciclev10029907m.g' => 'ccl', 'CiPaw.01G164800' => 'cil', 'CiPaw.07G083700' => 'cil', 'CiPaw.07G127000' => 'cil', 'CiPaw.07G136900' => 'cil', 'CiPaw.08G081700' => 'cil', 'CiPaw.09G194600' => 'cil', 'CiPaw.10G146500' => 'cil', 'CiPaw.13G091500' => 'cil', 'CiPaw.13G091600' => 'cil', 'ClCG00G003390' => 'cla', 'ClCG01G007220' => 'cla', 'ClCG03G001370' => 'cla', 'ClCG04G008100' => 'cla', 'ClCG06G006110' => 'cla', 'ClCG06G006130' => 'cla', 'ClCG10G021210' => 'cla', 'COL.COLO4_07648' => 'col', 'COL.COLO4_07650' => 'col', 'COL.COLO4_07651' => 'col', 'COL.COLO4_14780' => 'col', 'COL.COLO4_18546' => 'col', 'COL.COLO4_18547' => 'col', 'COL.COLO4_23103' => 'col', 'COL.COLO4_30419' => 'col', 'COL.COLO4_34232' => 'col', 'Cpa.g.sc169.20' => 'cpa', 'Cpa.g.sc57.45' => 'cpa', 'Cpa.g.sc58.124' => 'cpa', 'Cpa.g.sc58.125' => 'cpa', 'Cpa.g.sc81.118' => 'cpa', 'Cpa.g.sc81.119' => 'cpa', 'Cre12.g524700' => 'cre', 'CsaV3_1G034430' => 'csa', 'CsaV3_1G034440' => 'csa', 'CsaV3_1G034450' => 'csa', 'CsaV3_3G034830' => 'csa', 'CsaV3_4G025090' => 'csa', 'CsaV3_5G018660' => 'csa', 'CsaV3_6G038160' => 'csa', 'CSS0003447' => 'camsi', 'CSS0017840' => 'camsi', 'CSS0019260' => 'camsi', 'CSS0040375' => 'camsi', 'CSS0042533' => 'camsi', 'DCAR_005960' => 'dca', 'DCAR_012104' => 'dca', 'DCAR_012105' => 'dca', 'DCAR_012293' => 'dca', 'DCAR_015632' => 'dca', 'DCAR_024602' => 'dca', 'DCAR_028752' => 'dca', 'Dinv06261' => 'din', 'Dinv13982' => 'din', 'Dinv17029' => 'din', 'Dinv18463' => 'din', 'Dinv33181' => 'din', 'Dinv35585' => 'din', 'Dinv37161' => 'din', 'Dinv42977' => 'din', 'Dinv43122' => 'din', 'Dinv44517' => 'din', 'Duzib093G0256' => 'dzi', 'Duzib106G1254' => 'dzi', 'Duzib128G1789' => 'dzi', 'Duzib133G0633' => 'dzi', 'Duzib138G0510' => 'dzi', 'Duzib150G1084' => 'dzi', 'Duzib168G0488' => 'dzi', 'Duzib168G1523' => 'dzi', 'Duzib170G0133' => 'dzi', 'ECA234G1433' => 'eca', 'ECA236G1432' => 'eca', 'ECA236G2256' => 'eca', 'ECA236G2365' => 'eca', 'ECA236G4830' => 'eca', 'ECA248G1505' => 'eca', 'EL10Ac3g06431' => 'bvu', 'EL10Ac5g12577' => 'bvu', 'EL10Ac6g13533' => 'bvu', 'EL10Ac7g16045' => 'bvu', 'Eucgr.A01281' => 'egr', 'Eucgr.B02326' => 'egr', 'Eucgr.H03532' => 'egr', 'Eucgr.K00553' => 'egr', 'Eucgr.K03116' => 'egr', 'FAN02G3963' => 'fan', 'FAN05G0438' => 'fan', 'FAN09G2434' => 'fan', 'FAN12G3984' => 'fan', 'FAN14G0798' => 'fan', 'FAN17G0652' => 'fan', 'FAN19G1988' => 'fan', 'FAN22G0632' => 'fan', 'FAN23G0387' => 'fan', 'FAN26G1323' => 'fan', 'FAN28G0666' => 'fan', 'FvH4_1g26080' => 'fve', 'FvH4_3g36780' => 'fve', 'FvH4_4g15270' => 'fve', 'FvH4_6g13490' => 'fve', 'Glyma.01G098700' => 'gma', 'Glyma.03G065900' => 'gma', 'Glyma.03G073754' => 'gma', 'Glyma.03G073758' => 'gma', 'Glyma.03G083200' => 'gma', 'Glyma.03G225500' => 'gma', 'Glyma.05G037766' => 'gma', 'Glyma.07G133500' => 'gma', 'Glyma.10G139400' => 'gma', 'Glyma.10G248900' => 'gma', 'Glyma.11G137800' => 'gma', 'Glyma.12G061300' => 'gma', 'Glyma.13G337900' => 'gma', 'Glyma.15G036600' => 'gma', 'Glyma.18G182800' => 'gma', 'Glyma.19G222500' => 'gma', 'Glyma.20G144800' => 'gma', 'Gohir.A01G222000' => 'ghi', 'Gohir.A03G044000' => 'ghi', 'Gohir.A03G044100' => 'ghi', 'Gohir.A04G083100' => 'ghi', 'Gohir.A07G127200' => 'ghi', 'Gohir.A07G132400' => 'ghi', 'Gohir.A08G000700' => 'ghi', 'Gohir.A11G327300' => 'ghi', 'Gohir.D01G211500' => 'ghi', 'Gohir.D03G123400' => 'ghi', 'Gohir.D03G123500' => 'ghi', 'Gohir.D04G121800' => 'ghi', 'Gohir.D07G131500' => 'ghi', 'Gohir.D07G136600' => 'ghi', 'Gohir.D08G011600' => 'ghi', 'Gohir.D11G346200' => 'ghi', 'Gorai.001G142800' => 'gra', 'Gorai.001G148700' => 'gra', 'Gorai.002G257300' => 'gra', 'Gorai.003G130000' => 'gra', 'Gorai.003G130100' => 'gra', 'Gorai.004G005300' => 'gra', 'Gorai.007G376500' => 'gra', 'Gorai.012G104700' => 'gra', 'GSVIVG01017946001' => 'vvi', 'GSVIVG01024928001' => 'vvi', 'GSVIVG01028227001' => 'vvi', 'GSVIVG01034151001' => 'vvi', 'HanXRQChr05g0135031' => 'han', 'HanXRQChr05g0135041' => 'han', 'HanXRQChr05g0140021' => 'han', 'HanXRQChr06g0178981' => 'han', 'HanXRQChr07g0188251' => 'han', 'HanXRQChr08g0235311' => 'han', 'HanXRQChr09g0271011' => 'han', 'HanXRQChr10g0293321' => 'han', 'HanXRQChr13g0388171' => 'han', 'Haze_00916' => 'cav', 'Haze_05063' => 'cav', 'Haze_20814' => 'cav', 'Haze_24128' => 'cav', 'Hma1.2p1_0745F.1_g212010' => 'hma', 'Hma1.2p1_0757F.1_g213260' => 'hma', 'Hma1.2p1_0936F.1_g238840' => 'hma', 'Hma1.2p1_1735F.1_g299890' => 'hma', 'Hma1.2p1_1861F.1_g305685' => 'hma', 'HPP92_003397' => 'vpl', 'HPP92_012597' => 'vpl', 'HPP92_015520' => 'vpl', 'HPP92_015539' => 'vpl', 'HPP92_020373' => 'vpl', 'Hund04938' => 'sun', 'Hund10677' => 'sun', 'Hund11033' => 'sun', 'Hund12155' => 'sun', 'Lalb_Chr01g0022551' => 'lal', 'Lalb_Chr03g0042341' => 'lal', 'Lalb_Chr07g0192931' => 'lal', 'Lalb_Chr12g0209551' => 'lal', 'Lalb_Chr19g0125251' => 'lal', 'Lalb_Chr19g0137891' => 'lal', 'Lalb_Chr21g0304641' => 'lal', 'Lalb_Chr21g0309881' => 'lal', 'Lj1A5T12' => 'lonja', 'Lj1C148G10' => 'lonja', 'Lj2A93T83' => 'lonja', 'Lj3A738G68' => 'lonja', 'Lj3C966T1' => 'lonja', 'Lj3g0018958' => 'lja', 'Lj3g0021831' => 'lja', 'Lj3g0025443' => 'lja', 'Lj4g0026809' => 'lja', 'Lj5g0012558' => 'lja', 'Lj5g0021586' => 'lja', 'Lsat_1_v5_gn_5_156840' => 'lsa', 'Lsat_1_v5_gn_8_73460' => 'lsa', 'Lsat_1_v5_gn_8_73481' => 'lsa', 'Lsat_1_v5_gn_9_31601' => 'lsa', 'Lsat_1_v5_gn_9_77320' => 'lsa', 'Manes.01G171300' => 'mes', 'Manes.01G171400' => 'mes', 'Manes.01G236100' => 'mes', 'Manes.02G130500' => 'mes', 'Manes.02G130600' => 'mes', 'Manes.03G180200' => 'mes', 'Manes.05G007000' => 'mes', 'Manes.08G084400' => 'mes', 'Manes.09G092600' => 'mes', 'Manes.15G027900' => 'mes', 'MBI04_g40948_MAGBIO' => 'mbi', 'MBI14_g12123_MAGBIO' => 'mbi', 'MBI18_g28915_MAGBIO' => 'mbi', 'MCO09G053' => 'mco', 'MCO11G782' => 'mco', 'MCO15G215' => 'mco', 'MD03G1088500' => 'mdo', 'MD03G1088600' => 'mdo', 'MD04G1130800' => 'mdo', 'MD09G1291700' => 'mdo', 'MD11G1097500' => 'mdo', 'MD11G1097600' => 'mdo', 'MD12G1143900' => 'mdo', 'MD13G1191400' => 'mdo', 'MD16G1191500' => 'mdo', 'Medtr1g085570' => 'mtr', 'Medtr1g104610' => 'mtr', 'Medtr2g097520' => 'mtr', 'Medtr4g021800' => 'mtr', 'Medtr4g021825' => 'mtr', 'Medtr4g064270' => 'mtr', 'Medtr4g064380' => 'mtr', 'Medtr7g062150' => 'mtr', 'MELO3C003138.2' => 'cme', 'MELO3C005187.2' => 'cme', 'MELO3C009252.2' => 'cme', 'MELO3C014481.2' => 'cme', 'MELO3C020616.2' => 'cme', 'MELO3C020617.2' => 'cme', 'MELO3C020618.2' => 'cme', 'Migut.G00328' => 'egut', 'Migut.J00320' => 'egut', 'Migut.L01000' => 'egut', 'Migut.L01953' => 'egut', 'MSTRG.10253' => 'ama', 'MSTRG.19077' => 'ama', 'MSTRG.26780' => 'ama', 'MSTRG.4023' => 'ama', 'MSTRG.5655' => 'ama', 'MSTRG.9992' => 'ama', 'Nitab4.5_0000043g0310' => 'nta', 'Nitab4.5_0000463g0080' => 'nta', 'Nitab4.5_0000705g0170' => 'nta', 'Nitab4.5_0001326g0060' => 'nta', 'Nitab4.5_0001628g0030' => 'nta', 'Nitab4.5_0002103g0110' => 'nta', 'Nitab4.5_0002946g0030' => 'nta', 'Nitab4.5_0004639g0030' => 'nta', 'Nn2g11149' => 'nnu', 'Nn2g13389' => 'nnu', 'Nn4g25326' => 'nnu', 'Nn4g26290' => 'nnu', 'Nn5g29865' => 'nnu', 'Oeu004163.1' => 'oeu', 'Oeu006901.1' => 'oeu', 'Oeu010096.1' => 'oeu', 'Oeu024340.1' => 'oeu', 'Oeu048369.1' => 'oeu', 'Os01g0973000' => 'osa', 'Os03g0273800' => 'osa', 'Os03g0701200' => 'osa', 'Os03g0834050' => 'osa', 'Os07g0634400' => 'osa', 'Peaxi162Scf00092g01414' => 'pax', 'Peaxi162Scf00165g00818' => 'pax', 'Peaxi162Scf00309g00516' => 'pax', 'Peaxi162Scf00774g00218' => 'pax', 'PGR004G1824' => 'pgr', 'PGR004G2606' => 'pgr', 'PGR031G2716' => 'pgr', 'PGR102G2460' => 'pgr', 'PGR142G2599' => 'pgr', 'PGSC0003DMG400000843' => 'stu', 'PGSC0003DMG400008829' => 'stu', 'PGSC0003DMG400030418' => 'stu', 'PGSC0003DMG400031834' => 'stu', 'PGSC0003DMG401028300' => 'stu', 'PGSC0003DMG402028300' => 'stu', 'Phvul.001G219300' => 'pvu', 'Phvul.007G056000' => 'pvu', 'Phvul.007G208000' => 'pvu', 'Phvul.008G119500' => 'pvu', 'Phvul.010G011200' => 'pvu', 'Phvul.010G014800' => 'pvu', 'Phvul.011G062900' => 'pvu', 'Phvul.L007043' => 'pvu', 'Potri.001G242300' => 'ptr', 'Potri.002G185300' => 'ptr', 'Potri.006G086900' => 'ptr', 'Potri.008G151700' => 'ptr', 'Potri.009G033500' => 'ptr', 'Potri.010G089300' => 'ptr', 'Potri.014G110800' => 'ptr', 'Pp3c27_8130' => 'ppa', 'Pp3c6_27410' => 'ppa', 'PRCOL_00001659' => 'pco', 'PRCOL_00001927' => 'pco', 'PRCOL_00003649' => 'pco', 'Prupe.1G011600' => 'ppe', 'Prupe.3G000800' => 'ppe', 'Prupe.3G001100' => 'ppe', 'Prupe.6G072700' => 'ppe', 'Prupe.6G072800' => 'ppe', 'Prupe.6G257300' => 'ppe', 'Prupe.8G033000' => 'ppe', 'Psat0s2633g0080' => 'psa', 'Psat0s3396g0080' => 'psa', 'Psat0s3396g0200' => 'psa', 'Psat3g139080' => 'psa', 'Psat5g285080' => 'psa', 'Psat6g157760' => 'psa', 'Psat6g208440' => 'psa', 'Psat7g215320' => 'psa', 'Psat7g215400' => 'psa', 'Psat7g235600' => 'psa', 'Psat7g235760' => 'psa', 'PSO063G4603' => 'pso', 'PSO210G0182' => 'pso', 'PSO210G0196' => 'pso', 'PSO339G0394' => 'pso', 'PSO339G4127' => 'pso', 'PSO513G0064' => 'pso', 'PSO761G0079' => 'pso', 'QL01p031003' => 'qlo', 'QL01p031078' => 'qlo', 'QL06p003004' => 'qlo', 'QL07p048731' => 'qlo', 'QL09p037427' => 'qlo', 'RcHm_v2.0_Chr3g0466361' => 'rch', 'RcHm_v2.0_Chr3g0485571' => 'rch', 'RcHm_v2.0_Chr4g0416551' => 'rch', 'RcHm_v2.0_Chr5g0065831' => 'rch', 'Rhsim01G0230500' => 'rsi', 'Rhsim05G0194000' => 'rsi', 'Rhsim08G0250400' => 'rsi', 'Sabra02G0131000' => 'sbr', 'Sabra06G0066300' => 'sbr', 'Sabra08G0115500' => 'sbr', 'Sabra09G0023900' => 'sbr', 'Sabra10G0054000' => 'sbr', 'Sabra14G0081500' => 'sbr', 'Sabra16G0147100' => 'sbr', 'SalBow2G2957' => 'sbo', 'SalBow4G3320' => 'sbo', 'SalBow8G1894' => 'sbo', 'Sc07g0007950' => 'sci', 'Sc12g0001360' => 'sci', 'Sc13g0004330' => 'sci', 'Sc20g0005010' => 'sci', 'Sed0000361' => 'sed', 'Sed0001706' => 'sed', 'Sed0002422' => 'sed', 'Sed0004029' => 'sed', 'Sed0004602' => 'sed', 'Sed0004943' => 'sed', 'Sed0008646' => 'sed', 'Sed0023313' => 'sed', 'Sed0024843' => 'sed', 'SEGI_00081' => 'sgi', 'SEGI_00947' => 'sgi', 'SEGI_04046' => 'sgi', 'SEGI_06880' => 'sgi', 'SEGI_09736' => 'sgi', 'SEGI_12741' => 'sgi', 'SEGI_14530' => 'sgi', 'SEGI_20705' => 'sgi', 'SEGI_26088' => 'sgi', 'SEGI_28323' => 'sgi', 'SEGI_33343' => 'sgi', 'SGA_v2.0_scaffold126G33775' => 'sas', 'SGA_v2.0_scaffold2G01337' => 'sas', 'SGA_v2.0_scaffold38G15006' => 'sas', 'SGA_v2.0_scaffold39G15264' => 'sas', 'SGA_v2.0_scaffold453G51880' => 'sas', 'SHI12696' => 'shi', 'SMO367G1096' => 'smo', 'Solyc01g068630.3' => 'sly', 'Solyc05g011880.3' => 'sly', 'Solyc06g076300.3' => 'sly', 'Solyc09g010940.4' => 'sly', 'Solyc09g075890.3' => 'sly', 'Sopen01g030560' => 'spe', 'Sopen05g006630' => 'spe', 'Sopen06g032720' => 'spe', 'Sopen09g005660' => 'spe', 'Sopen09g030690' => 'spe', 'Sp4g14540' => 'spa', 'Sp4g20030' => 'spa', 'Sp5g01320' => 'spa', 'Sp6g21170' => 'spa', 'Sp6g21180' => 'spa', 'Sp6g21190' => 'spa', 'Sp6g40220' => 'spa', 'TAR362G0122' => 'tar', 'TAR362G1338' => 'tar', 'TAR369G0590' => 'tar', 'TAR371G0824' => 'tar', 'TAR622G1429' => 'tar', 'TAR623G0734' => 'tar', 'TAR625G0441' => 'tar', 'TAR629G0976' => 'tar', 'TAR633G1195' => 'tar', 'TAR636G2660' => 'tar', 'THA.LOC104799440' => 'tha', 'THA.LOC104800966' => 'tha', 'THA.LOC104806559' => 'tha', 'THA.LOC104810765' => 'tha', 'THA.LOC104816266' => 'tha', 'THA.LOC104817419' => 'tha', 'THA.LOC104827021' => 'tha', 'Thecc.01G327400' => 'tca', 'Thecc.04G229200' => 'tca', 'Thecc.05G037400' => 'tca', 'Thecc.09G318600' => 'tca', 'Thecc.09G318700' => 'tca', 'Thhalv10006238m.g' => 'esa', 'Thhalv10014321m.g' => 'esa', 'Thhalv10014335m.g' => 'esa', 'Thhalv10015826m.g' => 'esa', 'Thhalv10017107m.g' => 'esa', 'Thhalv10017180m.g' => 'esa', 'Thhalv10029339m.g' => 'esa', 'TPR.G1699' => 'tpr', 'TPR.G23609' => 'tpr', 'TPR.G3081' => 'tpr', 'TPR.G40397' => 'tpr', 'TPR.G5522' => 'tpr', 'TPR.G5618' => 'tpr', 'TPR.G5626' => 'tpr', 'TWI09G1632' => 'twi', 'TWI23G1230' => 'twi', 'TWI53G1064' => 'twi', 'TWI59G0751' => 'twi', 'TWI74G0947' => 'twi', 'TWI77G0337' => 'twi', 'TWI79G1254' => 'twi', 'unitig_0.g2341' => 'ugi', 'unitig_26.g10006' => 'ugi', 'unitig_26.g10008' => 'ugi', 'unitig_26.g9192' => 'ugi', 'vmacro14547' => 'vma', 'vmacro15333' => 'vma', 'vmacro18743' => 'vma', 'vmacro20166' => 'vma', 'VMungo0331G0523' => 'vmu', 'VMungo0331G1202' => 'vmu', 'VMungo0720G1228' => 'vmu', 'VMungo0720G1514' => 'vmu', 'VMungo1080G0169' => 'vmu', 'VMungo1127G1475' => 'vmu', 'VMungo1383G1208' => 'vmu', 'VMungo1383G1698' => 'vmu', 'Zm00001eb012270' => 'zma', 'Zm00001eb054100' => 'zma', 'Zm00001eb063350' => 'zma', 'Zm00001eb328560' => 'zma', 'Zm00001eb342820' => 'zma', 'Zm00001eb362210' => 'zma', 'Zm00001eb397730' => 'zma', 'Zm00001eb399750' => 'zma' ) $gf_id = 'HOM05D000959' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000959' ) $data_identifier = 'HOM05D000959' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 5, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 5, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 10, 'mbi' => (int) 3, 'mco' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 2, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 3, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 11, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399750' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000959', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '622', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p07100' => 'bna', 'A03p11720' => 'bna', 'A05p08300' => 'bna', 'A05p13380' => 'bna', 'A09p54130' => 'bna', 'A10p16690' => 'bna', 'A10p16700' => 'bna', 'A10p33390' => 'bna', 'Aa31LG10G16020' => 'aar', 'Aa31LG1G11810' => 'aar', 'Aa31LG1G11830' => 'aar', 'Aa31LG1G22510' => 'aar', 'Aa31LG5G4890' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5793' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2310' => 'aag', 'Actinidia08499' => 'ach', 'Actinidia11262' => 'ach', 'Actinidia23926' => 'ach', 'Actinidia34420' => 'ach', 'Actinidia36970' => 'ach', 'Ah.02g111220' => 'amhyb', 'Ah.15g097750' => 'amhyb', 'AL4G27500' => 'aly', 'AL6G11470' => 'aly', 'AL8G35950' => 'aly', 'AL8G35960' => 'aly', 'AL8G35970' => 'aly', 'Aqoxy1G00912' => 'aox', 'Aqoxy2G02253' => 'aox', 'Aqoxy2G02411' => 'aox', 'Aqoxy5G00485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BZ66YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K8ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM4FUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6BF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HFV7XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25JBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0YNNV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MAKK6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P70IT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP2Z6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V61LZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YWP64R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3S9AI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7PGHH' => 'arhy', 'AT2G32150' => 'ath', 'AT3G62040' => 'ath', 'AT5G02230' => 'ath', 'AT5G59480' => 'ath', 'AT5G59490' => 'ath', 'ATR0332G060' => 'atr', 'ATR0559G190' => 'atr', 'ATR0693G294' => 'atr', 'Atru.chr3.3975' => 'acertr', 'Atru.chr3.3976' => 'acertr', 'Atru.chr3.3977' => 'acertr', 'Atru.chr4.2498' => 'acertr', 'Atru.chr5.838' => 'acertr', 'Atru.chr8.1990' => 'acertr', 'Atru.chr8.1991' => 'acertr', 'Atru.chr8.1992' => 'acertr', 'AUR62001759' => 'cqu', 'AUR62009545' => 'cqu', 'AUR62010474' => 'cqu', 'AUR62025820' => 'cqu', 'AUR62030422' => 'cqu', 'AUR62033605' => 'cqu', 'AUR62038615' => 'cqu', 'AUR62041347' => 'cqu', 'BcaB01g04574' => 'bca', 'BcaB02g09263' => 'bca', 'BcaB02g10453' => 'bca', 'BcaB05g22513' => 'bca', 'BcaB08g36253' => 'bca', 'BcaB08g36254' => 'bca', 'BcaC01g06519' => 'bca', 'BcaC02g11889' => 'bca', 'BcaC03g14010' => 'bca', 'BcaC03g18439' => 'bca', 'BcaC04g19765' => 'bca', 'BcaC09g48432' => 'bca', 'BcaNung07302' => 'bca', 'BolC2t06040H' => 'bol', 'BolC2t07346H' => 'bol', 'BolC3t13817H' => 'bol', 'BolC4t22625H' => 'bol', 'BolC4t23297H' => 'bol', 'BolC8t51278H' => 'bol', 'BolC9t58050H' => 'bol', 'BolC9t58051H' => 'bol', 'BolC9t60163H' => 'bol', 'BraA02t04712Z' => 'bra', 'BraA02t05791Z' => 'bra', 'BraA03t10483Z' => 'bra', 'BraA05t19795Z' => 'bra', 'BraA05t20276Z' => 'bra', 'BraA09t40827Z' => 'bra', 'BraA10t43750Z' => 'bra', 'BraA10t43751Z' => 'bra', 'BraA10t45370Z' => 'bra', 'C02p00400' => 'bna', 'C02p12460' => 'bna', 'C03p13680' => 'bna', 'C04p10270' => 'bna', 'C04p17500' => 'bna', 'C08p37010' => 'bna', 'C09p51880' => 'bna', 'C09p51890' => 'bna', 'C09p74300' => 'bna', 'CAN.G179.26' => 'can', 'CAN.G3384.1' => 'can', 'CAN.G394.68' => 'can', 'CAN.G907.13' => 'can', 'CANSAT11G0012' => 'cansat', 'CANSAT25G1586' => 'cansat', 'CANSAT35G0735' => 'cansat', 'CANSAT54G0556' => 'cansat', 'CANSAT64G0356' => 'cansat', 'CANSAT78G2042' => 'cansat', 'CARHR125920' => 'chi', 'CARHR131910' => 'chi', 'CARHR172390' => 'chi', 'CARHR211140' => 'chi', 'CARHR285850' => 'chi', 'CARHR285860' => 'chi', 'Carub.0004s1347' => 'cru', 'Carub.0004s1960' => 'cru', 'Carub.0005s2880' => 'cru', 'Carub.0006s0107' => 'cru', 'Carub.0008s2015' => 'cru', 'Carub.0008s2016' => 'cru', 'Carub.0008s2017' => 'cru', 'Ca_01315_v3' => 'car', 'Ca_05063_v3' => 'car', 'Ca_10231_v3' => 'car', 'Ca_10913_v3' => 'car', 'Ca_19156_v3' => 'car', 'Ca_23644_v3' => 'car', 'Ca_26735_v3' => 'car', 'Cc01_g13130' => 'ccan', 'Cc02_g21690' => 'ccan', 'Cc03_g03600' => 'ccan', 'Cc06_g02510' => 'ccan', 'CDE02G1265' => 'cde', 'CDE05G0415' => 'cde', 'CDE08G1082' => 'cde', 'Cfa005780' => 'cfa', 'Cfa011522' => 'cfa', 'Cfa011523' => 'cfa', 'Cfa015627' => 'cfa', 'Cfa017359' => 'cfa', 'Ciclev10005687m.g' => 'ccl', 'Ciclev10012173m.g' => 'ccl', 'Ciclev10021621m.g' => 'ccl', 'Ciclev10028968m.g' => 'ccl', 'Ciclev10029907m.g' => 'ccl', 'CiPaw.01G164800' => 'cil', 'CiPaw.07G083700' => 'cil', 'CiPaw.07G127000' => 'cil', 'CiPaw.07G136900' => 'cil', 'CiPaw.08G081700' => 'cil', 'CiPaw.09G194600' => 'cil', 'CiPaw.10G146500' => 'cil', 'CiPaw.13G091500' => 'cil', 'CiPaw.13G091600' => 'cil', 'ClCG00G003390' => 'cla', 'ClCG01G007220' => 'cla', 'ClCG03G001370' => 'cla', 'ClCG04G008100' => 'cla', 'ClCG06G006110' => 'cla', 'ClCG06G006130' => 'cla', 'ClCG10G021210' => 'cla', 'COL.COLO4_07648' => 'col', 'COL.COLO4_07650' => 'col', 'COL.COLO4_07651' => 'col', 'COL.COLO4_14780' => 'col', 'COL.COLO4_18546' => 'col', 'COL.COLO4_18547' => 'col', 'COL.COLO4_23103' => 'col', 'COL.COLO4_30419' => 'col', 'COL.COLO4_34232' => 'col', 'Cpa.g.sc169.20' => 'cpa', 'Cpa.g.sc57.45' => 'cpa', 'Cpa.g.sc58.124' => 'cpa', 'Cpa.g.sc58.125' => 'cpa', 'Cpa.g.sc81.118' => 'cpa', 'Cpa.g.sc81.119' => 'cpa', 'Cre12.g524700' => 'cre', 'CsaV3_1G034430' => 'csa', 'CsaV3_1G034440' => 'csa', 'CsaV3_1G034450' => 'csa', 'CsaV3_3G034830' => 'csa', 'CsaV3_4G025090' => 'csa', 'CsaV3_5G018660' => 'csa', 'CsaV3_6G038160' => 'csa', 'CSS0003447' => 'camsi', 'CSS0017840' => 'camsi', 'CSS0019260' => 'camsi', 'CSS0040375' => 'camsi', 'CSS0042533' => 'camsi', 'DCAR_005960' => 'dca', 'DCAR_012104' => 'dca', 'DCAR_012105' => 'dca', 'DCAR_012293' => 'dca', 'DCAR_015632' => 'dca', 'DCAR_024602' => 'dca', 'DCAR_028752' => 'dca', 'Dinv06261' => 'din', 'Dinv13982' => 'din', 'Dinv17029' => 'din', 'Dinv18463' => 'din', 'Dinv33181' => 'din', 'Dinv35585' => 'din', 'Dinv37161' => 'din', 'Dinv42977' => 'din', 'Dinv43122' => 'din', 'Dinv44517' => 'din', 'Duzib093G0256' => 'dzi', 'Duzib106G1254' => 'dzi', 'Duzib128G1789' => 'dzi', 'Duzib133G0633' => 'dzi', 'Duzib138G0510' => 'dzi', 'Duzib150G1084' => 'dzi', 'Duzib168G0488' => 'dzi', 'Duzib168G1523' => 'dzi', 'Duzib170G0133' => 'dzi', 'ECA234G1433' => 'eca', 'ECA236G1432' => 'eca', 'ECA236G2256' => 'eca', 'ECA236G2365' => 'eca', 'ECA236G4830' => 'eca', 'ECA248G1505' => 'eca', 'EL10Ac3g06431' => 'bvu', 'EL10Ac5g12577' => 'bvu', 'EL10Ac6g13533' => 'bvu', 'EL10Ac7g16045' => 'bvu', 'Eucgr.A01281' => 'egr', 'Eucgr.B02326' => 'egr', 'Eucgr.H03532' => 'egr', 'Eucgr.K00553' => 'egr', 'Eucgr.K03116' => 'egr', 'FAN02G3963' => 'fan', 'FAN05G0438' => 'fan', 'FAN09G2434' => 'fan', 'FAN12G3984' => 'fan', 'FAN14G0798' => 'fan', 'FAN17G0652' => 'fan', 'FAN19G1988' => 'fan', 'FAN22G0632' => 'fan', 'FAN23G0387' => 'fan', 'FAN26G1323' => 'fan', 'FAN28G0666' => 'fan', 'FvH4_1g26080' => 'fve', 'FvH4_3g36780' => 'fve', 'FvH4_4g15270' => 'fve', 'FvH4_6g13490' => 'fve', 'Glyma.01G098700' => 'gma', 'Glyma.03G065900' => 'gma', 'Glyma.03G073754' => 'gma', 'Glyma.03G073758' => 'gma', 'Glyma.03G083200' => 'gma', 'Glyma.03G225500' => 'gma', 'Glyma.05G037766' => 'gma', 'Glyma.07G133500' => 'gma', 'Glyma.10G139400' => 'gma', 'Glyma.10G248900' => 'gma', 'Glyma.11G137800' => 'gma', 'Glyma.12G061300' => 'gma', 'Glyma.13G337900' => 'gma', 'Glyma.15G036600' => 'gma', 'Glyma.18G182800' => 'gma', 'Glyma.19G222500' => 'gma', 'Glyma.20G144800' => 'gma', 'Gohir.A01G222000' => 'ghi', 'Gohir.A03G044000' => 'ghi', 'Gohir.A03G044100' => 'ghi', 'Gohir.A04G083100' => 'ghi', 'Gohir.A07G127200' => 'ghi', 'Gohir.A07G132400' => 'ghi', 'Gohir.A08G000700' => 'ghi', 'Gohir.A11G327300' => 'ghi', 'Gohir.D01G211500' => 'ghi', 'Gohir.D03G123400' => 'ghi', 'Gohir.D03G123500' => 'ghi', 'Gohir.D04G121800' => 'ghi', 'Gohir.D07G131500' => 'ghi', 'Gohir.D07G136600' => 'ghi', 'Gohir.D08G011600' => 'ghi', 'Gohir.D11G346200' => 'ghi', 'Gorai.001G142800' => 'gra', 'Gorai.001G148700' => 'gra', 'Gorai.002G257300' => 'gra', 'Gorai.003G130000' => 'gra', 'Gorai.003G130100' => 'gra', 'Gorai.004G005300' => 'gra', 'Gorai.007G376500' => 'gra', 'Gorai.012G104700' => 'gra', 'GSVIVG01017946001' => 'vvi', 'GSVIVG01024928001' => 'vvi', 'GSVIVG01028227001' => 'vvi', 'GSVIVG01034151001' => 'vvi', 'HanXRQChr05g0135031' => 'han', 'HanXRQChr05g0135041' => 'han', 'HanXRQChr05g0140021' => 'han', 'HanXRQChr06g0178981' => 'han', 'HanXRQChr07g0188251' => 'han', 'HanXRQChr08g0235311' => 'han', 'HanXRQChr09g0271011' => 'han', 'HanXRQChr10g0293321' => 'han', 'HanXRQChr13g0388171' => 'han', 'Haze_00916' => 'cav', 'Haze_05063' => 'cav', 'Haze_20814' => 'cav', 'Haze_24128' => 'cav', 'Hma1.2p1_0745F.1_g212010' => 'hma', 'Hma1.2p1_0757F.1_g213260' => 'hma', 'Hma1.2p1_0936F.1_g238840' => 'hma', 'Hma1.2p1_1735F.1_g299890' => 'hma', 'Hma1.2p1_1861F.1_g305685' => 'hma', 'HPP92_003397' => 'vpl', 'HPP92_012597' => 'vpl', 'HPP92_015520' => 'vpl', 'HPP92_015539' => 'vpl', 'HPP92_020373' => 'vpl', 'Hund04938' => 'sun', 'Hund10677' => 'sun', 'Hund11033' => 'sun', 'Hund12155' => 'sun', 'Lalb_Chr01g0022551' => 'lal', 'Lalb_Chr03g0042341' => 'lal', 'Lalb_Chr07g0192931' => 'lal', 'Lalb_Chr12g0209551' => 'lal', 'Lalb_Chr19g0125251' => 'lal', 'Lalb_Chr19g0137891' => 'lal', 'Lalb_Chr21g0304641' => 'lal', 'Lalb_Chr21g0309881' => 'lal', 'Lj1A5T12' => 'lonja', 'Lj1C148G10' => 'lonja', 'Lj2A93T83' => 'lonja', 'Lj3A738G68' => 'lonja', 'Lj3C966T1' => 'lonja', 'Lj3g0018958' => 'lja', 'Lj3g0021831' => 'lja', 'Lj3g0025443' => 'lja', 'Lj4g0026809' => 'lja', 'Lj5g0012558' => 'lja', 'Lj5g0021586' => 'lja', 'Lsat_1_v5_gn_5_156840' => 'lsa', 'Lsat_1_v5_gn_8_73460' => 'lsa', 'Lsat_1_v5_gn_8_73481' => 'lsa', 'Lsat_1_v5_gn_9_31601' => 'lsa', 'Lsat_1_v5_gn_9_77320' => 'lsa', 'Manes.01G171300' => 'mes', 'Manes.01G171400' => 'mes', 'Manes.01G236100' => 'mes', 'Manes.02G130500' => 'mes', 'Manes.02G130600' => 'mes', 'Manes.03G180200' => 'mes', 'Manes.05G007000' => 'mes', 'Manes.08G084400' => 'mes', 'Manes.09G092600' => 'mes', 'Manes.15G027900' => 'mes', 'MBI04_g40948_MAGBIO' => 'mbi', 'MBI14_g12123_MAGBIO' => 'mbi', 'MBI18_g28915_MAGBIO' => 'mbi', 'MCO09G053' => 'mco', 'MCO11G782' => 'mco', 'MCO15G215' => 'mco', 'MD03G1088500' => 'mdo', 'MD03G1088600' => 'mdo', 'MD04G1130800' => 'mdo', 'MD09G1291700' => 'mdo', 'MD11G1097500' => 'mdo', 'MD11G1097600' => 'mdo', 'MD12G1143900' => 'mdo', 'MD13G1191400' => 'mdo', 'MD16G1191500' => 'mdo', 'Medtr1g085570' => 'mtr', 'Medtr1g104610' => 'mtr', 'Medtr2g097520' => 'mtr', 'Medtr4g021800' => 'mtr', 'Medtr4g021825' => 'mtr', 'Medtr4g064270' => 'mtr', 'Medtr4g064380' => 'mtr', 'Medtr7g062150' => 'mtr', 'MELO3C003138.2' => 'cme', 'MELO3C005187.2' => 'cme', 'MELO3C009252.2' => 'cme', 'MELO3C014481.2' => 'cme', 'MELO3C020616.2' => 'cme', 'MELO3C020617.2' => 'cme', 'MELO3C020618.2' => 'cme', 'Migut.G00328' => 'egut', 'Migut.J00320' => 'egut', 'Migut.L01000' => 'egut', 'Migut.L01953' => 'egut', 'MSTRG.10253' => 'ama', 'MSTRG.19077' => 'ama', 'MSTRG.26780' => 'ama', 'MSTRG.4023' => 'ama', 'MSTRG.5655' => 'ama', 'MSTRG.9992' => 'ama', 'Nitab4.5_0000043g0310' => 'nta', 'Nitab4.5_0000463g0080' => 'nta', 'Nitab4.5_0000705g0170' => 'nta', 'Nitab4.5_0001326g0060' => 'nta', 'Nitab4.5_0001628g0030' => 'nta', 'Nitab4.5_0002103g0110' => 'nta', 'Nitab4.5_0002946g0030' => 'nta', 'Nitab4.5_0004639g0030' => 'nta', 'Nn2g11149' => 'nnu', 'Nn2g13389' => 'nnu', 'Nn4g25326' => 'nnu', 'Nn4g26290' => 'nnu', 'Nn5g29865' => 'nnu', 'Oeu004163.1' => 'oeu', 'Oeu006901.1' => 'oeu', 'Oeu010096.1' => 'oeu', 'Oeu024340.1' => 'oeu', 'Oeu048369.1' => 'oeu', 'Os01g0973000' => 'osa', 'Os03g0273800' => 'osa', 'Os03g0701200' => 'osa', 'Os03g0834050' => 'osa', 'Os07g0634400' => 'osa', 'Peaxi162Scf00092g01414' => 'pax', 'Peaxi162Scf00165g00818' => 'pax', 'Peaxi162Scf00309g00516' => 'pax', 'Peaxi162Scf00774g00218' => 'pax', 'PGR004G1824' => 'pgr', 'PGR004G2606' => 'pgr', 'PGR031G2716' => 'pgr', 'PGR102G2460' => 'pgr', 'PGR142G2599' => 'pgr', 'PGSC0003DMG400000843' => 'stu', 'PGSC0003DMG400008829' => 'stu', 'PGSC0003DMG400030418' => 'stu', 'PGSC0003DMG400031834' => 'stu', 'PGSC0003DMG401028300' => 'stu', 'PGSC0003DMG402028300' => 'stu', 'Phvul.001G219300' => 'pvu', 'Phvul.007G056000' => 'pvu', 'Phvul.007G208000' => 'pvu', 'Phvul.008G119500' => 'pvu', 'Phvul.010G011200' => 'pvu', 'Phvul.010G014800' => 'pvu', 'Phvul.011G062900' => 'pvu', 'Phvul.L007043' => 'pvu', 'Potri.001G242300' => 'ptr', 'Potri.002G185300' => 'ptr', 'Potri.006G086900' => 'ptr', 'Potri.008G151700' => 'ptr', 'Potri.009G033500' => 'ptr', 'Potri.010G089300' => 'ptr', 'Potri.014G110800' => 'ptr', 'Pp3c27_8130' => 'ppa', 'Pp3c6_27410' => 'ppa', 'PRCOL_00001659' => 'pco', 'PRCOL_00001927' => 'pco', 'PRCOL_00003649' => 'pco', 'Prupe.1G011600' => 'ppe', 'Prupe.3G000800' => 'ppe', 'Prupe.3G001100' => 'ppe', 'Prupe.6G072700' => 'ppe', 'Prupe.6G072800' => 'ppe', 'Prupe.6G257300' => 'ppe', 'Prupe.8G033000' => 'ppe', 'Psat0s2633g0080' => 'psa', 'Psat0s3396g0080' => 'psa', 'Psat0s3396g0200' => 'psa', 'Psat3g139080' => 'psa', 'Psat5g285080' => 'psa', 'Psat6g157760' => 'psa', 'Psat6g208440' => 'psa', 'Psat7g215320' => 'psa', 'Psat7g215400' => 'psa', 'Psat7g235600' => 'psa', 'Psat7g235760' => 'psa', 'PSO063G4603' => 'pso', 'PSO210G0182' => 'pso', 'PSO210G0196' => 'pso', 'PSO339G0394' => 'pso', 'PSO339G4127' => 'pso', 'PSO513G0064' => 'pso', 'PSO761G0079' => 'pso', 'QL01p031003' => 'qlo', 'QL01p031078' => 'qlo', 'QL06p003004' => 'qlo', 'QL07p048731' => 'qlo', 'QL09p037427' => 'qlo', 'RcHm_v2.0_Chr3g0466361' => 'rch', 'RcHm_v2.0_Chr3g0485571' => 'rch', 'RcHm_v2.0_Chr4g0416551' => 'rch', 'RcHm_v2.0_Chr5g0065831' => 'rch', 'Rhsim01G0230500' => 'rsi', 'Rhsim05G0194000' => 'rsi', 'Rhsim08G0250400' => 'rsi', 'Sabra02G0131000' => 'sbr', 'Sabra06G0066300' => 'sbr', 'Sabra08G0115500' => 'sbr', 'Sabra09G0023900' => 'sbr', 'Sabra10G0054000' => 'sbr', 'Sabra14G0081500' => 'sbr', 'Sabra16G0147100' => 'sbr', 'SalBow2G2957' => 'sbo', 'SalBow4G3320' => 'sbo', 'SalBow8G1894' => 'sbo', 'Sc07g0007950' => 'sci', 'Sc12g0001360' => 'sci', 'Sc13g0004330' => 'sci', 'Sc20g0005010' => 'sci', 'Sed0000361' => 'sed', 'Sed0001706' => 'sed', 'Sed0002422' => 'sed', 'Sed0004029' => 'sed', 'Sed0004602' => 'sed', 'Sed0004943' => 'sed', 'Sed0008646' => 'sed', 'Sed0023313' => 'sed', 'Sed0024843' => 'sed', 'SEGI_00081' => 'sgi', 'SEGI_00947' => 'sgi', 'SEGI_04046' => 'sgi', 'SEGI_06880' => 'sgi', 'SEGI_09736' => 'sgi', 'SEGI_12741' => 'sgi', 'SEGI_14530' => 'sgi', 'SEGI_20705' => 'sgi', 'SEGI_26088' => 'sgi', 'SEGI_28323' => 'sgi', 'SEGI_33343' => 'sgi', 'SGA_v2.0_scaffold126G33775' => 'sas', 'SGA_v2.0_scaffold2G01337' => 'sas', 'SGA_v2.0_scaffold38G15006' => 'sas', 'SGA_v2.0_scaffold39G15264' => 'sas', 'SGA_v2.0_scaffold453G51880' => 'sas', 'SHI12696' => 'shi', 'SMO367G1096' => 'smo', 'Solyc01g068630.3' => 'sly', 'Solyc05g011880.3' => 'sly', 'Solyc06g076300.3' => 'sly', 'Solyc09g010940.4' => 'sly', 'Solyc09g075890.3' => 'sly', 'Sopen01g030560' => 'spe', 'Sopen05g006630' => 'spe', 'Sopen06g032720' => 'spe', 'Sopen09g005660' => 'spe', 'Sopen09g030690' => 'spe', 'Sp4g14540' => 'spa', 'Sp4g20030' => 'spa', 'Sp5g01320' => 'spa', 'Sp6g21170' => 'spa', 'Sp6g21180' => 'spa', 'Sp6g21190' => 'spa', 'Sp6g40220' => 'spa', 'TAR362G0122' => 'tar', 'TAR362G1338' => 'tar', 'TAR369G0590' => 'tar', 'TAR371G0824' => 'tar', 'TAR622G1429' => 'tar', 'TAR623G0734' => 'tar', 'TAR625G0441' => 'tar', 'TAR629G0976' => 'tar', 'TAR633G1195' => 'tar', 'TAR636G2660' => 'tar', 'THA.LOC104799440' => 'tha', 'THA.LOC104800966' => 'tha', 'THA.LOC104806559' => 'tha', 'THA.LOC104810765' => 'tha', 'THA.LOC104816266' => 'tha', 'THA.LOC104817419' => 'tha', 'THA.LOC104827021' => 'tha', 'Thecc.01G327400' => 'tca', 'Thecc.04G229200' => 'tca', 'Thecc.05G037400' => 'tca', 'Thecc.09G318600' => 'tca', 'Thecc.09G318700' => 'tca', 'Thhalv10006238m.g' => 'esa', 'Thhalv10014321m.g' => 'esa', 'Thhalv10014335m.g' => 'esa', 'Thhalv10015826m.g' => 'esa', 'Thhalv10017107m.g' => 'esa', 'Thhalv10017180m.g' => 'esa', 'Thhalv10029339m.g' => 'esa', 'TPR.G1699' => 'tpr', 'TPR.G23609' => 'tpr', 'TPR.G3081' => 'tpr', 'TPR.G40397' => 'tpr', 'TPR.G5522' => 'tpr', 'TPR.G5618' => 'tpr', 'TPR.G5626' => 'tpr', 'TWI09G1632' => 'twi', 'TWI23G1230' => 'twi', 'TWI53G1064' => 'twi', 'TWI59G0751' => 'twi', 'TWI74G0947' => 'twi', 'TWI77G0337' => 'twi', 'TWI79G1254' => 'twi', 'unitig_0.g2341' => 'ugi', 'unitig_26.g10006' => 'ugi', 'unitig_26.g10008' => 'ugi', 'unitig_26.g9192' => 'ugi', 'vmacro14547' => 'vma', 'vmacro15333' => 'vma', 'vmacro18743' => 'vma', 'vmacro20166' => 'vma', 'VMungo0331G0523' => 'vmu', 'VMungo0331G1202' => 'vmu', 'VMungo0720G1228' => 'vmu', 'VMungo0720G1514' => 'vmu', 'VMungo1080G0169' => 'vmu', 'VMungo1127G1475' => 'vmu', 'VMungo1383G1208' => 'vmu', 'VMungo1383G1698' => 'vmu', 'Zm00001eb012270' => 'zma', 'Zm00001eb054100' => 'zma', 'Zm00001eb063350' => 'zma', 'Zm00001eb328560' => 'zma', 'Zm00001eb342820' => 'zma', 'Zm00001eb362210' => 'zma', 'Zm00001eb397730' => 'zma', 'Zm00001eb399750' => 'zma' ), 'gf_id' => 'HOM05D000959', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000959' ), 'data_identifier' => 'HOM05D000959', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000959', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '622', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p07100' => 'bna', 'A03p11720' => 'bna', 'A05p08300' => 'bna', 'A05p13380' => 'bna', 'A09p54130' => 'bna', 'A10p16690' => 'bna', 'A10p16700' => 'bna', 'A10p33390' => 'bna', 'Aa31LG10G16020' => 'aar', 'Aa31LG1G11810' => 'aar', 'Aa31LG1G11830' => 'aar', 'Aa31LG1G22510' => 'aar', 'Aa31LG5G4890' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5793' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2310' => 'aag', 'Actinidia08499' => 'ach', 'Actinidia11262' => 'ach', 'Actinidia23926' => 'ach', 'Actinidia34420' => 'ach', 'Actinidia36970' => 'ach', 'Ah.02g111220' => 'amhyb', 'Ah.15g097750' => 'amhyb', 'AL4G27500' => 'aly', 'AL6G11470' => 'aly', 'AL8G35950' => 'aly', 'AL8G35960' => 'aly', 'AL8G35970' => 'aly', 'Aqoxy1G00912' => 'aox', 'Aqoxy2G02253' => 'aox', 'Aqoxy2G02411' => 'aox', 'Aqoxy5G00485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BZ66YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K8ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM4FUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6BF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HFV7XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25JBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0YNNV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MAKK6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P70IT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP2Z6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V61LZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YWP64R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3S9AI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7PGHH' => 'arhy', 'AT2G32150' => 'ath', 'AT3G62040' => 'ath', 'AT5G02230' => 'ath', 'AT5G59480' => 'ath', 'AT5G59490' => 'ath', 'ATR0332G060' => 'atr', 'ATR0559G190' => 'atr', 'ATR0693G294' => 'atr', 'Atru.chr3.3975' => 'acertr', 'Atru.chr3.3976' => 'acertr', 'Atru.chr3.3977' => 'acertr', 'Atru.chr4.2498' => 'acertr', 'Atru.chr5.838' => 'acertr', 'Atru.chr8.1990' => 'acertr', 'Atru.chr8.1991' => 'acertr', 'Atru.chr8.1992' => 'acertr', 'AUR62001759' => 'cqu', 'AUR62009545' => 'cqu', 'AUR62010474' => 'cqu', 'AUR62025820' => 'cqu', 'AUR62030422' => 'cqu', 'AUR62033605' => 'cqu', 'AUR62038615' => 'cqu', 'AUR62041347' => 'cqu', 'BcaB01g04574' => 'bca', 'BcaB02g09263' => 'bca', 'BcaB02g10453' => 'bca', 'BcaB05g22513' => 'bca', 'BcaB08g36253' => 'bca', 'BcaB08g36254' => 'bca', 'BcaC01g06519' => 'bca', 'BcaC02g11889' => 'bca', 'BcaC03g14010' => 'bca', 'BcaC03g18439' => 'bca', 'BcaC04g19765' => 'bca', 'BcaC09g48432' => 'bca', 'BcaNung07302' => 'bca', 'BolC2t06040H' => 'bol', 'BolC2t07346H' => 'bol', 'BolC3t13817H' => 'bol', 'BolC4t22625H' => 'bol', 'BolC4t23297H' => 'bol', 'BolC8t51278H' => 'bol', 'BolC9t58050H' => 'bol', 'BolC9t58051H' => 'bol', 'BolC9t60163H' => 'bol', 'BraA02t04712Z' => 'bra', 'BraA02t05791Z' => 'bra', 'BraA03t10483Z' => 'bra', 'BraA05t19795Z' => 'bra', 'BraA05t20276Z' => 'bra', 'BraA09t40827Z' => 'bra', 'BraA10t43750Z' => 'bra', 'BraA10t43751Z' => 'bra', 'BraA10t45370Z' => 'bra', 'C02p00400' => 'bna', 'C02p12460' => 'bna', 'C03p13680' => 'bna', 'C04p10270' => 'bna', 'C04p17500' => 'bna', 'C08p37010' => 'bna', 'C09p51880' => 'bna', 'C09p51890' => 'bna', 'C09p74300' => 'bna', 'CAN.G179.26' => 'can', 'CAN.G3384.1' => 'can', 'CAN.G394.68' => 'can', 'CAN.G907.13' => 'can', 'CANSAT11G0012' => 'cansat', 'CANSAT25G1586' => 'cansat', 'CANSAT35G0735' => 'cansat', 'CANSAT54G0556' => 'cansat', 'CANSAT64G0356' => 'cansat', 'CANSAT78G2042' => 'cansat', 'CARHR125920' => 'chi', 'CARHR131910' => 'chi', 'CARHR172390' => 'chi', 'CARHR211140' => 'chi', 'CARHR285850' => 'chi', 'CARHR285860' => 'chi', 'Carub.0004s1347' => 'cru', 'Carub.0004s1960' => 'cru', 'Carub.0005s2880' => 'cru', 'Carub.0006s0107' => 'cru', 'Carub.0008s2015' => 'cru', 'Carub.0008s2016' => 'cru', 'Carub.0008s2017' => 'cru', 'Ca_01315_v3' => 'car', 'Ca_05063_v3' => 'car', 'Ca_10231_v3' => 'car', 'Ca_10913_v3' => 'car', 'Ca_19156_v3' => 'car', 'Ca_23644_v3' => 'car', 'Ca_26735_v3' => 'car', 'Cc01_g13130' => 'ccan', 'Cc02_g21690' => 'ccan', 'Cc03_g03600' => 'ccan', 'Cc06_g02510' => 'ccan', 'CDE02G1265' => 'cde', 'CDE05G0415' => 'cde', 'CDE08G1082' => 'cde', 'Cfa005780' => 'cfa', 'Cfa011522' => 'cfa', 'Cfa011523' => 'cfa', 'Cfa015627' => 'cfa', 'Cfa017359' => 'cfa', 'Ciclev10005687m.g' => 'ccl', 'Ciclev10012173m.g' => 'ccl', 'Ciclev10021621m.g' => 'ccl', 'Ciclev10028968m.g' => 'ccl', 'Ciclev10029907m.g' => 'ccl', 'CiPaw.01G164800' => 'cil', 'CiPaw.07G083700' => 'cil', 'CiPaw.07G127000' => 'cil', 'CiPaw.07G136900' => 'cil', 'CiPaw.08G081700' => 'cil', 'CiPaw.09G194600' => 'cil', 'CiPaw.10G146500' => 'cil', 'CiPaw.13G091500' => 'cil', 'CiPaw.13G091600' => 'cil', 'ClCG00G003390' => 'cla', 'ClCG01G007220' => 'cla', 'ClCG03G001370' => 'cla', 'ClCG04G008100' => 'cla', 'ClCG06G006110' => 'cla', 'ClCG06G006130' => 'cla', 'ClCG10G021210' => 'cla', 'COL.COLO4_07648' => 'col', 'COL.COLO4_07650' => 'col', 'COL.COLO4_07651' => 'col', 'COL.COLO4_14780' => 'col', 'COL.COLO4_18546' => 'col', 'COL.COLO4_18547' => 'col', 'COL.COLO4_23103' => 'col', 'COL.COLO4_30419' => 'col', 'COL.COLO4_34232' => 'col', 'Cpa.g.sc169.20' => 'cpa', 'Cpa.g.sc57.45' => 'cpa', 'Cpa.g.sc58.124' => 'cpa', 'Cpa.g.sc58.125' => 'cpa', 'Cpa.g.sc81.118' => 'cpa', 'Cpa.g.sc81.119' => 'cpa', 'Cre12.g524700' => 'cre', 'CsaV3_1G034430' => 'csa', 'CsaV3_1G034440' => 'csa', 'CsaV3_1G034450' => 'csa', 'CsaV3_3G034830' => 'csa', 'CsaV3_4G025090' => 'csa', 'CsaV3_5G018660' => 'csa', 'CsaV3_6G038160' => 'csa', 'CSS0003447' => 'camsi', 'CSS0017840' => 'camsi', 'CSS0019260' => 'camsi', 'CSS0040375' => 'camsi', 'CSS0042533' => 'camsi', 'DCAR_005960' => 'dca', 'DCAR_012104' => 'dca', 'DCAR_012105' => 'dca', 'DCAR_012293' => 'dca', 'DCAR_015632' => 'dca', 'DCAR_024602' => 'dca', 'DCAR_028752' => 'dca', 'Dinv06261' => 'din', 'Dinv13982' => 'din', 'Dinv17029' => 'din', 'Dinv18463' => 'din', 'Dinv33181' => 'din', 'Dinv35585' => 'din', 'Dinv37161' => 'din', 'Dinv42977' => 'din', 'Dinv43122' => 'din', 'Dinv44517' => 'din', 'Duzib093G0256' => 'dzi', 'Duzib106G1254' => 'dzi', 'Duzib128G1789' => 'dzi', 'Duzib133G0633' => 'dzi', 'Duzib138G0510' => 'dzi', 'Duzib150G1084' => 'dzi', 'Duzib168G0488' => 'dzi', 'Duzib168G1523' => 'dzi', 'Duzib170G0133' => 'dzi', 'ECA234G1433' => 'eca', 'ECA236G1432' => 'eca', 'ECA236G2256' => 'eca', 'ECA236G2365' => 'eca', 'ECA236G4830' => 'eca', 'ECA248G1505' => 'eca', 'EL10Ac3g06431' => 'bvu', 'EL10Ac5g12577' => 'bvu', 'EL10Ac6g13533' => 'bvu', 'EL10Ac7g16045' => 'bvu', 'Eucgr.A01281' => 'egr', 'Eucgr.B02326' => 'egr', 'Eucgr.H03532' => 'egr', 'Eucgr.K00553' => 'egr', 'Eucgr.K03116' => 'egr', 'FAN02G3963' => 'fan', 'FAN05G0438' => 'fan', 'FAN09G2434' => 'fan', 'FAN12G3984' => 'fan', 'FAN14G0798' => 'fan', 'FAN17G0652' => 'fan', 'FAN19G1988' => 'fan', 'FAN22G0632' => 'fan', 'FAN23G0387' => 'fan', 'FAN26G1323' => 'fan', 'FAN28G0666' => 'fan', 'FvH4_1g26080' => 'fve', 'FvH4_3g36780' => 'fve', 'FvH4_4g15270' => 'fve', 'FvH4_6g13490' => 'fve', 'Glyma.01G098700' => 'gma', 'Glyma.03G065900' => 'gma', 'Glyma.03G073754' => 'gma', 'Glyma.03G073758' => 'gma', 'Glyma.03G083200' => 'gma', 'Glyma.03G225500' => 'gma', 'Glyma.05G037766' => 'gma', 'Glyma.07G133500' => 'gma', 'Glyma.10G139400' => 'gma', 'Glyma.10G248900' => 'gma', 'Glyma.11G137800' => 'gma', 'Glyma.12G061300' => 'gma', 'Glyma.13G337900' => 'gma', 'Glyma.15G036600' => 'gma', 'Glyma.18G182800' => 'gma', 'Glyma.19G222500' => 'gma', 'Glyma.20G144800' => 'gma', 'Gohir.A01G222000' => 'ghi', 'Gohir.A03G044000' => 'ghi', 'Gohir.A03G044100' => 'ghi', 'Gohir.A04G083100' => 'ghi', 'Gohir.A07G127200' => 'ghi', 'Gohir.A07G132400' => 'ghi', 'Gohir.A08G000700' => 'ghi', 'Gohir.A11G327300' => 'ghi', 'Gohir.D01G211500' => 'ghi', 'Gohir.D03G123400' => 'ghi', 'Gohir.D03G123500' => 'ghi', 'Gohir.D04G121800' => 'ghi', 'Gohir.D07G131500' => 'ghi', 'Gohir.D07G136600' => 'ghi', 'Gohir.D08G011600' => 'ghi', 'Gohir.D11G346200' => 'ghi', 'Gorai.001G142800' => 'gra', 'Gorai.001G148700' => 'gra', 'Gorai.002G257300' => 'gra', 'Gorai.003G130000' => 'gra', 'Gorai.003G130100' => 'gra', 'Gorai.004G005300' => 'gra', 'Gorai.007G376500' => 'gra', 'Gorai.012G104700' => 'gra', 'GSVIVG01017946001' => 'vvi', 'GSVIVG01024928001' => 'vvi', 'GSVIVG01028227001' => 'vvi', 'GSVIVG01034151001' => 'vvi', 'HanXRQChr05g0135031' => 'han', 'HanXRQChr05g0135041' => 'han', 'HanXRQChr05g0140021' => 'han', 'HanXRQChr06g0178981' => 'han', 'HanXRQChr07g0188251' => 'han', 'HanXRQChr08g0235311' => 'han', 'HanXRQChr09g0271011' => 'han', 'HanXRQChr10g0293321' => 'han', 'HanXRQChr13g0388171' => 'han', 'Haze_00916' => 'cav', 'Haze_05063' => 'cav', 'Haze_20814' => 'cav', 'Haze_24128' => 'cav', 'Hma1.2p1_0745F.1_g212010' => 'hma', 'Hma1.2p1_0757F.1_g213260' => 'hma', 'Hma1.2p1_0936F.1_g238840' => 'hma', 'Hma1.2p1_1735F.1_g299890' => 'hma', 'Hma1.2p1_1861F.1_g305685' => 'hma', 'HPP92_003397' => 'vpl', 'HPP92_012597' => 'vpl', 'HPP92_015520' => 'vpl', 'HPP92_015539' => 'vpl', 'HPP92_020373' => 'vpl', 'Hund04938' => 'sun', 'Hund10677' => 'sun', 'Hund11033' => 'sun', 'Hund12155' => 'sun', 'Lalb_Chr01g0022551' => 'lal', 'Lalb_Chr03g0042341' => 'lal', 'Lalb_Chr07g0192931' => 'lal', 'Lalb_Chr12g0209551' => 'lal', 'Lalb_Chr19g0125251' => 'lal', 'Lalb_Chr19g0137891' => 'lal', 'Lalb_Chr21g0304641' => 'lal', 'Lalb_Chr21g0309881' => 'lal', 'Lj1A5T12' => 'lonja', 'Lj1C148G10' => 'lonja', 'Lj2A93T83' => 'lonja', 'Lj3A738G68' => 'lonja', 'Lj3C966T1' => 'lonja', 'Lj3g0018958' => 'lja', 'Lj3g0021831' => 'lja', 'Lj3g0025443' => 'lja', 'Lj4g0026809' => 'lja', 'Lj5g0012558' => 'lja', 'Lj5g0021586' => 'lja', 'Lsat_1_v5_gn_5_156840' => 'lsa', 'Lsat_1_v5_gn_8_73460' => 'lsa', 'Lsat_1_v5_gn_8_73481' => 'lsa', 'Lsat_1_v5_gn_9_31601' => 'lsa', 'Lsat_1_v5_gn_9_77320' => 'lsa', 'Manes.01G171300' => 'mes', 'Manes.01G171400' => 'mes', 'Manes.01G236100' => 'mes', 'Manes.02G130500' => 'mes', 'Manes.02G130600' => 'mes', 'Manes.03G180200' => 'mes', 'Manes.05G007000' => 'mes', 'Manes.08G084400' => 'mes', 'Manes.09G092600' => 'mes', 'Manes.15G027900' => 'mes', 'MBI04_g40948_MAGBIO' => 'mbi', 'MBI14_g12123_MAGBIO' => 'mbi', 'MBI18_g28915_MAGBIO' => 'mbi', 'MCO09G053' => 'mco', 'MCO11G782' => 'mco', 'MCO15G215' => 'mco', 'MD03G1088500' => 'mdo', 'MD03G1088600' => 'mdo', 'MD04G1130800' => 'mdo', 'MD09G1291700' => 'mdo', 'MD11G1097500' => 'mdo', 'MD11G1097600' => 'mdo', 'MD12G1143900' => 'mdo', 'MD13G1191400' => 'mdo', 'MD16G1191500' => 'mdo', 'Medtr1g085570' => 'mtr', 'Medtr1g104610' => 'mtr', 'Medtr2g097520' => 'mtr', 'Medtr4g021800' => 'mtr', 'Medtr4g021825' => 'mtr', 'Medtr4g064270' => 'mtr', 'Medtr4g064380' => 'mtr', 'Medtr7g062150' => 'mtr', 'MELO3C003138.2' => 'cme', 'MELO3C005187.2' => 'cme', 'MELO3C009252.2' => 'cme', 'MELO3C014481.2' => 'cme', 'MELO3C020616.2' => 'cme', 'MELO3C020617.2' => 'cme', 'MELO3C020618.2' => 'cme', 'Migut.G00328' => 'egut', 'Migut.J00320' => 'egut', 'Migut.L01000' => 'egut', 'Migut.L01953' => 'egut', 'MSTRG.10253' => 'ama', 'MSTRG.19077' => 'ama', 'MSTRG.26780' => 'ama', 'MSTRG.4023' => 'ama', 'MSTRG.5655' => 'ama', 'MSTRG.9992' => 'ama', 'Nitab4.5_0000043g0310' => 'nta', 'Nitab4.5_0000463g0080' => 'nta', 'Nitab4.5_0000705g0170' => 'nta', 'Nitab4.5_0001326g0060' => 'nta', 'Nitab4.5_0001628g0030' => 'nta', 'Nitab4.5_0002103g0110' => 'nta', 'Nitab4.5_0002946g0030' => 'nta', 'Nitab4.5_0004639g0030' => 'nta', 'Nn2g11149' => 'nnu', 'Nn2g13389' => 'nnu', 'Nn4g25326' => 'nnu', 'Nn4g26290' => 'nnu', 'Nn5g29865' => 'nnu', 'Oeu004163.1' => 'oeu', 'Oeu006901.1' => 'oeu', 'Oeu010096.1' => 'oeu', 'Oeu024340.1' => 'oeu', 'Oeu048369.1' => 'oeu', 'Os01g0973000' => 'osa', 'Os03g0273800' => 'osa', 'Os03g0701200' => 'osa', 'Os03g0834050' => 'osa', 'Os07g0634400' => 'osa', 'Peaxi162Scf00092g01414' => 'pax', 'Peaxi162Scf00165g00818' => 'pax', 'Peaxi162Scf00309g00516' => 'pax', 'Peaxi162Scf00774g00218' => 'pax', 'PGR004G1824' => 'pgr', 'PGR004G2606' => 'pgr', 'PGR031G2716' => 'pgr', 'PGR102G2460' => 'pgr', 'PGR142G2599' => 'pgr', 'PGSC0003DMG400000843' => 'stu', 'PGSC0003DMG400008829' => 'stu', 'PGSC0003DMG400030418' => 'stu', 'PGSC0003DMG400031834' => 'stu', 'PGSC0003DMG401028300' => 'stu', 'PGSC0003DMG402028300' => 'stu', 'Phvul.001G219300' => 'pvu', 'Phvul.007G056000' => 'pvu', 'Phvul.007G208000' => 'pvu', 'Phvul.008G119500' => 'pvu', 'Phvul.010G011200' => 'pvu', 'Phvul.010G014800' => 'pvu', 'Phvul.011G062900' => 'pvu', 'Phvul.L007043' => 'pvu', 'Potri.001G242300' => 'ptr', 'Potri.002G185300' => 'ptr', 'Potri.006G086900' => 'ptr', 'Potri.008G151700' => 'ptr', 'Potri.009G033500' => 'ptr', 'Potri.010G089300' => 'ptr', 'Potri.014G110800' => 'ptr', 'Pp3c27_8130' => 'ppa', 'Pp3c6_27410' => 'ppa', 'PRCOL_00001659' => 'pco', 'PRCOL_00001927' => 'pco', 'PRCOL_00003649' => 'pco', 'Prupe.1G011600' => 'ppe', 'Prupe.3G000800' => 'ppe', 'Prupe.3G001100' => 'ppe', 'Prupe.6G072700' => 'ppe', 'Prupe.6G072800' => 'ppe', 'Prupe.6G257300' => 'ppe', 'Prupe.8G033000' => 'ppe', 'Psat0s2633g0080' => 'psa', 'Psat0s3396g0080' => 'psa', 'Psat0s3396g0200' => 'psa', 'Psat3g139080' => 'psa', 'Psat5g285080' => 'psa', 'Psat6g157760' => 'psa', 'Psat6g208440' => 'psa', 'Psat7g215320' => 'psa', 'Psat7g215400' => 'psa', 'Psat7g235600' => 'psa', 'Psat7g235760' => 'psa', 'PSO063G4603' => 'pso', 'PSO210G0182' => 'pso', 'PSO210G0196' => 'pso', 'PSO339G0394' => 'pso', 'PSO339G4127' => 'pso', 'PSO513G0064' => 'pso', 'PSO761G0079' => 'pso', 'QL01p031003' => 'qlo', 'QL01p031078' => 'qlo', 'QL06p003004' => 'qlo', 'QL07p048731' => 'qlo', 'QL09p037427' => 'qlo', 'RcHm_v2.0_Chr3g0466361' => 'rch', 'RcHm_v2.0_Chr3g0485571' => 'rch', 'RcHm_v2.0_Chr4g0416551' => 'rch', 'RcHm_v2.0_Chr5g0065831' => 'rch', 'Rhsim01G0230500' => 'rsi', 'Rhsim05G0194000' => 'rsi', 'Rhsim08G0250400' => 'rsi', 'Sabra02G0131000' => 'sbr', 'Sabra06G0066300' => 'sbr', 'Sabra08G0115500' => 'sbr', 'Sabra09G0023900' => 'sbr', 'Sabra10G0054000' => 'sbr', 'Sabra14G0081500' => 'sbr', 'Sabra16G0147100' => 'sbr', 'SalBow2G2957' => 'sbo', 'SalBow4G3320' => 'sbo', 'SalBow8G1894' => 'sbo', 'Sc07g0007950' => 'sci', 'Sc12g0001360' => 'sci', 'Sc13g0004330' => 'sci', 'Sc20g0005010' => 'sci', 'Sed0000361' => 'sed', 'Sed0001706' => 'sed', 'Sed0002422' => 'sed', 'Sed0004029' => 'sed', 'Sed0004602' => 'sed', 'Sed0004943' => 'sed', 'Sed0008646' => 'sed', 'Sed0023313' => 'sed', 'Sed0024843' => 'sed', 'SEGI_00081' => 'sgi', 'SEGI_00947' => 'sgi', 'SEGI_04046' => 'sgi', 'SEGI_06880' => 'sgi', 'SEGI_09736' => 'sgi', 'SEGI_12741' => 'sgi', 'SEGI_14530' => 'sgi', 'SEGI_20705' => 'sgi', 'SEGI_26088' => 'sgi', 'SEGI_28323' => 'sgi', 'SEGI_33343' => 'sgi', 'SGA_v2.0_scaffold126G33775' => 'sas', 'SGA_v2.0_scaffold2G01337' => 'sas', 'SGA_v2.0_scaffold38G15006' => 'sas', 'SGA_v2.0_scaffold39G15264' => 'sas', 'SGA_v2.0_scaffold453G51880' => 'sas', 'SHI12696' => 'shi', 'SMO367G1096' => 'smo', 'Solyc01g068630.3' => 'sly', 'Solyc05g011880.3' => 'sly', 'Solyc06g076300.3' => 'sly', 'Solyc09g010940.4' => 'sly', 'Solyc09g075890.3' => 'sly', 'Sopen01g030560' => 'spe', 'Sopen05g006630' => 'spe', 'Sopen06g032720' => 'spe', 'Sopen09g005660' => 'spe', 'Sopen09g030690' => 'spe', 'Sp4g14540' => 'spa', 'Sp4g20030' => 'spa', 'Sp5g01320' => 'spa', 'Sp6g21170' => 'spa', 'Sp6g21180' => 'spa', 'Sp6g21190' => 'spa', 'Sp6g40220' => 'spa', 'TAR362G0122' => 'tar', 'TAR362G1338' => 'tar', 'TAR369G0590' => 'tar', 'TAR371G0824' => 'tar', 'TAR622G1429' => 'tar', 'TAR623G0734' => 'tar', 'TAR625G0441' => 'tar', 'TAR629G0976' => 'tar', 'TAR633G1195' => 'tar', 'TAR636G2660' => 'tar', 'THA.LOC104799440' => 'tha', 'THA.LOC104800966' => 'tha', 'THA.LOC104806559' => 'tha', 'THA.LOC104810765' => 'tha', 'THA.LOC104816266' => 'tha', 'THA.LOC104817419' => 'tha', 'THA.LOC104827021' => 'tha', 'Thecc.01G327400' => 'tca', 'Thecc.04G229200' => 'tca', 'Thecc.05G037400' => 'tca', 'Thecc.09G318600' => 'tca', 'Thecc.09G318700' => 'tca', 'Thhalv10006238m.g' => 'esa', 'Thhalv10014321m.g' => 'esa', 'Thhalv10014335m.g' => 'esa', 'Thhalv10015826m.g' => 'esa', 'Thhalv10017107m.g' => 'esa', 'Thhalv10017180m.g' => 'esa', 'Thhalv10029339m.g' => 'esa', 'TPR.G1699' => 'tpr', 'TPR.G23609' => 'tpr', 'TPR.G3081' => 'tpr', 'TPR.G40397' => 'tpr', 'TPR.G5522' => 'tpr', 'TPR.G5618' => 'tpr', 'TPR.G5626' => 'tpr', 'TWI09G1632' => 'twi', 'TWI23G1230' => 'twi', 'TWI53G1064' => 'twi', 'TWI59G0751' => 'twi', 'TWI74G0947' => 'twi', 'TWI77G0337' => 'twi', 'TWI79G1254' => 'twi', 'unitig_0.g2341' => 'ugi', 'unitig_26.g10006' => 'ugi', 'unitig_26.g10008' => 'ugi', 'unitig_26.g9192' => 'ugi', 'vmacro14547' => 'vma', 'vmacro15333' => 'vma', 'vmacro18743' => 'vma', 'vmacro20166' => 'vma', 'VMungo0331G0523' => 'vmu', 'VMungo0331G1202' => 'vmu', 'VMungo0720G1228' => 'vmu', 'VMungo0720G1514' => 'vmu', 'VMungo1080G0169' => 'vmu', 'VMungo1127G1475' => 'vmu', 'VMungo1383G1208' => 'vmu', 'VMungo1383G1698' => 'vmu', 'Zm00001eb012270' => 'zma', 'Zm00001eb054100' => 'zma', 'Zm00001eb063350' => 'zma', 'Zm00001eb328560' => 'zma', 'Zm00001eb342820' => 'zma', 'Zm00001eb362210' => 'zma', 'Zm00001eb397730' => 'zma', 'Zm00001eb399750' => 'zma' ) $gf_id = 'HOM05D000959' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000959' ) $data_identifier = 'HOM05D000959' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 5, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 5, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 10, 'mbi' => (int) 3, 'mco' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 2, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 3, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 11, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399750' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000959', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '622', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p07100' => 'bna', 'A03p11720' => 'bna', 'A05p08300' => 'bna', 'A05p13380' => 'bna', 'A09p54130' => 'bna', 'A10p16690' => 'bna', 'A10p16700' => 'bna', 'A10p33390' => 'bna', 'Aa31LG10G16020' => 'aar', 'Aa31LG1G11810' => 'aar', 'Aa31LG1G11830' => 'aar', 'Aa31LG1G22510' => 'aar', 'Aa31LG5G4890' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5793' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2310' => 'aag', 'Actinidia08499' => 'ach', 'Actinidia11262' => 'ach', 'Actinidia23926' => 'ach', 'Actinidia34420' => 'ach', 'Actinidia36970' => 'ach', 'Ah.02g111220' => 'amhyb', 'Ah.15g097750' => 'amhyb', 'AL4G27500' => 'aly', 'AL6G11470' => 'aly', 'AL8G35950' => 'aly', 'AL8G35960' => 'aly', 'AL8G35970' => 'aly', 'Aqoxy1G00912' => 'aox', 'Aqoxy2G02253' => 'aox', 'Aqoxy2G02411' => 'aox', 'Aqoxy5G00485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BZ66YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K8ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM4FUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6BF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HFV7XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25JBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0YNNV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MAKK6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P70IT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP2Z6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V61LZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YWP64R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3S9AI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7PGHH' => 'arhy', 'AT2G32150' => 'ath', 'AT3G62040' => 'ath', 'AT5G02230' => 'ath', 'AT5G59480' => 'ath', 'AT5G59490' => 'ath', 'ATR0332G060' => 'atr', 'ATR0559G190' => 'atr', 'ATR0693G294' => 'atr', 'Atru.chr3.3975' => 'acertr', 'Atru.chr3.3976' => 'acertr', 'Atru.chr3.3977' => 'acertr', 'Atru.chr4.2498' => 'acertr', 'Atru.chr5.838' => 'acertr', 'Atru.chr8.1990' => 'acertr', 'Atru.chr8.1991' => 'acertr', 'Atru.chr8.1992' => 'acertr', 'AUR62001759' => 'cqu', 'AUR62009545' => 'cqu', 'AUR62010474' => 'cqu', 'AUR62025820' => 'cqu', 'AUR62030422' => 'cqu', 'AUR62033605' => 'cqu', 'AUR62038615' => 'cqu', 'AUR62041347' => 'cqu', 'BcaB01g04574' => 'bca', 'BcaB02g09263' => 'bca', 'BcaB02g10453' => 'bca', 'BcaB05g22513' => 'bca', 'BcaB08g36253' => 'bca', 'BcaB08g36254' => 'bca', 'BcaC01g06519' => 'bca', 'BcaC02g11889' => 'bca', 'BcaC03g14010' => 'bca', 'BcaC03g18439' => 'bca', 'BcaC04g19765' => 'bca', 'BcaC09g48432' => 'bca', 'BcaNung07302' => 'bca', 'BolC2t06040H' => 'bol', 'BolC2t07346H' => 'bol', 'BolC3t13817H' => 'bol', 'BolC4t22625H' => 'bol', 'BolC4t23297H' => 'bol', 'BolC8t51278H' => 'bol', 'BolC9t58050H' => 'bol', 'BolC9t58051H' => 'bol', 'BolC9t60163H' => 'bol', 'BraA02t04712Z' => 'bra', 'BraA02t05791Z' => 'bra', 'BraA03t10483Z' => 'bra', 'BraA05t19795Z' => 'bra', 'BraA05t20276Z' => 'bra', 'BraA09t40827Z' => 'bra', 'BraA10t43750Z' => 'bra', 'BraA10t43751Z' => 'bra', 'BraA10t45370Z' => 'bra', 'C02p00400' => 'bna', 'C02p12460' => 'bna', 'C03p13680' => 'bna', 'C04p10270' => 'bna', 'C04p17500' => 'bna', 'C08p37010' => 'bna', 'C09p51880' => 'bna', 'C09p51890' => 'bna', 'C09p74300' => 'bna', 'CAN.G179.26' => 'can', 'CAN.G3384.1' => 'can', 'CAN.G394.68' => 'can', 'CAN.G907.13' => 'can', 'CANSAT11G0012' => 'cansat', 'CANSAT25G1586' => 'cansat', 'CANSAT35G0735' => 'cansat', 'CANSAT54G0556' => 'cansat', 'CANSAT64G0356' => 'cansat', 'CANSAT78G2042' => 'cansat', 'CARHR125920' => 'chi', 'CARHR131910' => 'chi', 'CARHR172390' => 'chi', 'CARHR211140' => 'chi', 'CARHR285850' => 'chi', 'CARHR285860' => 'chi', 'Carub.0004s1347' => 'cru', 'Carub.0004s1960' => 'cru', 'Carub.0005s2880' => 'cru', 'Carub.0006s0107' => 'cru', 'Carub.0008s2015' => 'cru', 'Carub.0008s2016' => 'cru', 'Carub.0008s2017' => 'cru', 'Ca_01315_v3' => 'car', 'Ca_05063_v3' => 'car', 'Ca_10231_v3' => 'car', 'Ca_10913_v3' => 'car', 'Ca_19156_v3' => 'car', 'Ca_23644_v3' => 'car', 'Ca_26735_v3' => 'car', 'Cc01_g13130' => 'ccan', 'Cc02_g21690' => 'ccan', 'Cc03_g03600' => 'ccan', 'Cc06_g02510' => 'ccan', 'CDE02G1265' => 'cde', 'CDE05G0415' => 'cde', 'CDE08G1082' => 'cde', 'Cfa005780' => 'cfa', 'Cfa011522' => 'cfa', 'Cfa011523' => 'cfa', 'Cfa015627' => 'cfa', 'Cfa017359' => 'cfa', 'Ciclev10005687m.g' => 'ccl', 'Ciclev10012173m.g' => 'ccl', 'Ciclev10021621m.g' => 'ccl', 'Ciclev10028968m.g' => 'ccl', 'Ciclev10029907m.g' => 'ccl', 'CiPaw.01G164800' => 'cil', 'CiPaw.07G083700' => 'cil', 'CiPaw.07G127000' => 'cil', 'CiPaw.07G136900' => 'cil', 'CiPaw.08G081700' => 'cil', 'CiPaw.09G194600' => 'cil', 'CiPaw.10G146500' => 'cil', 'CiPaw.13G091500' => 'cil', 'CiPaw.13G091600' => 'cil', 'ClCG00G003390' => 'cla', 'ClCG01G007220' => 'cla', 'ClCG03G001370' => 'cla', 'ClCG04G008100' => 'cla', 'ClCG06G006110' => 'cla', 'ClCG06G006130' => 'cla', 'ClCG10G021210' => 'cla', 'COL.COLO4_07648' => 'col', 'COL.COLO4_07650' => 'col', 'COL.COLO4_07651' => 'col', 'COL.COLO4_14780' => 'col', 'COL.COLO4_18546' => 'col', 'COL.COLO4_18547' => 'col', 'COL.COLO4_23103' => 'col', 'COL.COLO4_30419' => 'col', 'COL.COLO4_34232' => 'col', 'Cpa.g.sc169.20' => 'cpa', 'Cpa.g.sc57.45' => 'cpa', 'Cpa.g.sc58.124' => 'cpa', 'Cpa.g.sc58.125' => 'cpa', 'Cpa.g.sc81.118' => 'cpa', 'Cpa.g.sc81.119' => 'cpa', 'Cre12.g524700' => 'cre', 'CsaV3_1G034430' => 'csa', 'CsaV3_1G034440' => 'csa', 'CsaV3_1G034450' => 'csa', 'CsaV3_3G034830' => 'csa', 'CsaV3_4G025090' => 'csa', 'CsaV3_5G018660' => 'csa', 'CsaV3_6G038160' => 'csa', 'CSS0003447' => 'camsi', 'CSS0017840' => 'camsi', 'CSS0019260' => 'camsi', 'CSS0040375' => 'camsi', 'CSS0042533' => 'camsi', 'DCAR_005960' => 'dca', 'DCAR_012104' => 'dca', 'DCAR_012105' => 'dca', 'DCAR_012293' => 'dca', 'DCAR_015632' => 'dca', 'DCAR_024602' => 'dca', 'DCAR_028752' => 'dca', 'Dinv06261' => 'din', 'Dinv13982' => 'din', 'Dinv17029' => 'din', 'Dinv18463' => 'din', 'Dinv33181' => 'din', 'Dinv35585' => 'din', 'Dinv37161' => 'din', 'Dinv42977' => 'din', 'Dinv43122' => 'din', 'Dinv44517' => 'din', 'Duzib093G0256' => 'dzi', 'Duzib106G1254' => 'dzi', 'Duzib128G1789' => 'dzi', 'Duzib133G0633' => 'dzi', 'Duzib138G0510' => 'dzi', 'Duzib150G1084' => 'dzi', 'Duzib168G0488' => 'dzi', 'Duzib168G1523' => 'dzi', 'Duzib170G0133' => 'dzi', 'ECA234G1433' => 'eca', 'ECA236G1432' => 'eca', 'ECA236G2256' => 'eca', 'ECA236G2365' => 'eca', 'ECA236G4830' => 'eca', 'ECA248G1505' => 'eca', 'EL10Ac3g06431' => 'bvu', 'EL10Ac5g12577' => 'bvu', 'EL10Ac6g13533' => 'bvu', 'EL10Ac7g16045' => 'bvu', 'Eucgr.A01281' => 'egr', 'Eucgr.B02326' => 'egr', 'Eucgr.H03532' => 'egr', 'Eucgr.K00553' => 'egr', 'Eucgr.K03116' => 'egr', 'FAN02G3963' => 'fan', 'FAN05G0438' => 'fan', 'FAN09G2434' => 'fan', 'FAN12G3984' => 'fan', 'FAN14G0798' => 'fan', 'FAN17G0652' => 'fan', 'FAN19G1988' => 'fan', 'FAN22G0632' => 'fan', 'FAN23G0387' => 'fan', 'FAN26G1323' => 'fan', 'FAN28G0666' => 'fan', 'FvH4_1g26080' => 'fve', 'FvH4_3g36780' => 'fve', 'FvH4_4g15270' => 'fve', 'FvH4_6g13490' => 'fve', 'Glyma.01G098700' => 'gma', 'Glyma.03G065900' => 'gma', 'Glyma.03G073754' => 'gma', 'Glyma.03G073758' => 'gma', 'Glyma.03G083200' => 'gma', 'Glyma.03G225500' => 'gma', 'Glyma.05G037766' => 'gma', 'Glyma.07G133500' => 'gma', 'Glyma.10G139400' => 'gma', 'Glyma.10G248900' => 'gma', 'Glyma.11G137800' => 'gma', 'Glyma.12G061300' => 'gma', 'Glyma.13G337900' => 'gma', 'Glyma.15G036600' => 'gma', 'Glyma.18G182800' => 'gma', 'Glyma.19G222500' => 'gma', 'Glyma.20G144800' => 'gma', 'Gohir.A01G222000' => 'ghi', 'Gohir.A03G044000' => 'ghi', 'Gohir.A03G044100' => 'ghi', 'Gohir.A04G083100' => 'ghi', 'Gohir.A07G127200' => 'ghi', 'Gohir.A07G132400' => 'ghi', 'Gohir.A08G000700' => 'ghi', 'Gohir.A11G327300' => 'ghi', 'Gohir.D01G211500' => 'ghi', 'Gohir.D03G123400' => 'ghi', 'Gohir.D03G123500' => 'ghi', 'Gohir.D04G121800' => 'ghi', 'Gohir.D07G131500' => 'ghi', 'Gohir.D07G136600' => 'ghi', 'Gohir.D08G011600' => 'ghi', 'Gohir.D11G346200' => 'ghi', 'Gorai.001G142800' => 'gra', 'Gorai.001G148700' => 'gra', 'Gorai.002G257300' => 'gra', 'Gorai.003G130000' => 'gra', 'Gorai.003G130100' => 'gra', 'Gorai.004G005300' => 'gra', 'Gorai.007G376500' => 'gra', 'Gorai.012G104700' => 'gra', 'GSVIVG01017946001' => 'vvi', 'GSVIVG01024928001' => 'vvi', 'GSVIVG01028227001' => 'vvi', 'GSVIVG01034151001' => 'vvi', 'HanXRQChr05g0135031' => 'han', 'HanXRQChr05g0135041' => 'han', 'HanXRQChr05g0140021' => 'han', 'HanXRQChr06g0178981' => 'han', 'HanXRQChr07g0188251' => 'han', 'HanXRQChr08g0235311' => 'han', 'HanXRQChr09g0271011' => 'han', 'HanXRQChr10g0293321' => 'han', 'HanXRQChr13g0388171' => 'han', 'Haze_00916' => 'cav', 'Haze_05063' => 'cav', 'Haze_20814' => 'cav', 'Haze_24128' => 'cav', 'Hma1.2p1_0745F.1_g212010' => 'hma', 'Hma1.2p1_0757F.1_g213260' => 'hma', 'Hma1.2p1_0936F.1_g238840' => 'hma', 'Hma1.2p1_1735F.1_g299890' => 'hma', 'Hma1.2p1_1861F.1_g305685' => 'hma', 'HPP92_003397' => 'vpl', 'HPP92_012597' => 'vpl', 'HPP92_015520' => 'vpl', 'HPP92_015539' => 'vpl', 'HPP92_020373' => 'vpl', 'Hund04938' => 'sun', 'Hund10677' => 'sun', 'Hund11033' => 'sun', 'Hund12155' => 'sun', 'Lalb_Chr01g0022551' => 'lal', 'Lalb_Chr03g0042341' => 'lal', 'Lalb_Chr07g0192931' => 'lal', 'Lalb_Chr12g0209551' => 'lal', 'Lalb_Chr19g0125251' => 'lal', 'Lalb_Chr19g0137891' => 'lal', 'Lalb_Chr21g0304641' => 'lal', 'Lalb_Chr21g0309881' => 'lal', 'Lj1A5T12' => 'lonja', 'Lj1C148G10' => 'lonja', 'Lj2A93T83' => 'lonja', 'Lj3A738G68' => 'lonja', 'Lj3C966T1' => 'lonja', 'Lj3g0018958' => 'lja', 'Lj3g0021831' => 'lja', 'Lj3g0025443' => 'lja', 'Lj4g0026809' => 'lja', 'Lj5g0012558' => 'lja', 'Lj5g0021586' => 'lja', 'Lsat_1_v5_gn_5_156840' => 'lsa', 'Lsat_1_v5_gn_8_73460' => 'lsa', 'Lsat_1_v5_gn_8_73481' => 'lsa', 'Lsat_1_v5_gn_9_31601' => 'lsa', 'Lsat_1_v5_gn_9_77320' => 'lsa', 'Manes.01G171300' => 'mes', 'Manes.01G171400' => 'mes', 'Manes.01G236100' => 'mes', 'Manes.02G130500' => 'mes', 'Manes.02G130600' => 'mes', 'Manes.03G180200' => 'mes', 'Manes.05G007000' => 'mes', 'Manes.08G084400' => 'mes', 'Manes.09G092600' => 'mes', 'Manes.15G027900' => 'mes', 'MBI04_g40948_MAGBIO' => 'mbi', 'MBI14_g12123_MAGBIO' => 'mbi', 'MBI18_g28915_MAGBIO' => 'mbi', 'MCO09G053' => 'mco', 'MCO11G782' => 'mco', 'MCO15G215' => 'mco', 'MD03G1088500' => 'mdo', 'MD03G1088600' => 'mdo', 'MD04G1130800' => 'mdo', 'MD09G1291700' => 'mdo', 'MD11G1097500' => 'mdo', 'MD11G1097600' => 'mdo', 'MD12G1143900' => 'mdo', 'MD13G1191400' => 'mdo', 'MD16G1191500' => 'mdo', 'Medtr1g085570' => 'mtr', 'Medtr1g104610' => 'mtr', 'Medtr2g097520' => 'mtr', 'Medtr4g021800' => 'mtr', 'Medtr4g021825' => 'mtr', 'Medtr4g064270' => 'mtr', 'Medtr4g064380' => 'mtr', 'Medtr7g062150' => 'mtr', 'MELO3C003138.2' => 'cme', 'MELO3C005187.2' => 'cme', 'MELO3C009252.2' => 'cme', 'MELO3C014481.2' => 'cme', 'MELO3C020616.2' => 'cme', 'MELO3C020617.2' => 'cme', 'MELO3C020618.2' => 'cme', 'Migut.G00328' => 'egut', 'Migut.J00320' => 'egut', 'Migut.L01000' => 'egut', 'Migut.L01953' => 'egut', 'MSTRG.10253' => 'ama', 'MSTRG.19077' => 'ama', 'MSTRG.26780' => 'ama', 'MSTRG.4023' => 'ama', 'MSTRG.5655' => 'ama', 'MSTRG.9992' => 'ama', 'Nitab4.5_0000043g0310' => 'nta', 'Nitab4.5_0000463g0080' => 'nta', 'Nitab4.5_0000705g0170' => 'nta', 'Nitab4.5_0001326g0060' => 'nta', 'Nitab4.5_0001628g0030' => 'nta', 'Nitab4.5_0002103g0110' => 'nta', 'Nitab4.5_0002946g0030' => 'nta', 'Nitab4.5_0004639g0030' => 'nta', 'Nn2g11149' => 'nnu', 'Nn2g13389' => 'nnu', 'Nn4g25326' => 'nnu', 'Nn4g26290' => 'nnu', 'Nn5g29865' => 'nnu', 'Oeu004163.1' => 'oeu', 'Oeu006901.1' => 'oeu', 'Oeu010096.1' => 'oeu', 'Oeu024340.1' => 'oeu', 'Oeu048369.1' => 'oeu', 'Os01g0973000' => 'osa', 'Os03g0273800' => 'osa', 'Os03g0701200' => 'osa', 'Os03g0834050' => 'osa', 'Os07g0634400' => 'osa', 'Peaxi162Scf00092g01414' => 'pax', 'Peaxi162Scf00165g00818' => 'pax', 'Peaxi162Scf00309g00516' => 'pax', 'Peaxi162Scf00774g00218' => 'pax', 'PGR004G1824' => 'pgr', 'PGR004G2606' => 'pgr', 'PGR031G2716' => 'pgr', 'PGR102G2460' => 'pgr', 'PGR142G2599' => 'pgr', 'PGSC0003DMG400000843' => 'stu', 'PGSC0003DMG400008829' => 'stu', 'PGSC0003DMG400030418' => 'stu', 'PGSC0003DMG400031834' => 'stu', 'PGSC0003DMG401028300' => 'stu', 'PGSC0003DMG402028300' => 'stu', 'Phvul.001G219300' => 'pvu', 'Phvul.007G056000' => 'pvu', 'Phvul.007G208000' => 'pvu', 'Phvul.008G119500' => 'pvu', 'Phvul.010G011200' => 'pvu', 'Phvul.010G014800' => 'pvu', 'Phvul.011G062900' => 'pvu', 'Phvul.L007043' => 'pvu', 'Potri.001G242300' => 'ptr', 'Potri.002G185300' => 'ptr', 'Potri.006G086900' => 'ptr', 'Potri.008G151700' => 'ptr', 'Potri.009G033500' => 'ptr', 'Potri.010G089300' => 'ptr', 'Potri.014G110800' => 'ptr', 'Pp3c27_8130' => 'ppa', 'Pp3c6_27410' => 'ppa', 'PRCOL_00001659' => 'pco', 'PRCOL_00001927' => 'pco', 'PRCOL_00003649' => 'pco', 'Prupe.1G011600' => 'ppe', 'Prupe.3G000800' => 'ppe', 'Prupe.3G001100' => 'ppe', 'Prupe.6G072700' => 'ppe', 'Prupe.6G072800' => 'ppe', 'Prupe.6G257300' => 'ppe', 'Prupe.8G033000' => 'ppe', 'Psat0s2633g0080' => 'psa', 'Psat0s3396g0080' => 'psa', 'Psat0s3396g0200' => 'psa', 'Psat3g139080' => 'psa', 'Psat5g285080' => 'psa', 'Psat6g157760' => 'psa', 'Psat6g208440' => 'psa', 'Psat7g215320' => 'psa', 'Psat7g215400' => 'psa', 'Psat7g235600' => 'psa', 'Psat7g235760' => 'psa', 'PSO063G4603' => 'pso', 'PSO210G0182' => 'pso', 'PSO210G0196' => 'pso', 'PSO339G0394' => 'pso', 'PSO339G4127' => 'pso', 'PSO513G0064' => 'pso', 'PSO761G0079' => 'pso', 'QL01p031003' => 'qlo', 'QL01p031078' => 'qlo', 'QL06p003004' => 'qlo', 'QL07p048731' => 'qlo', 'QL09p037427' => 'qlo', 'RcHm_v2.0_Chr3g0466361' => 'rch', 'RcHm_v2.0_Chr3g0485571' => 'rch', 'RcHm_v2.0_Chr4g0416551' => 'rch', 'RcHm_v2.0_Chr5g0065831' => 'rch', 'Rhsim01G0230500' => 'rsi', 'Rhsim05G0194000' => 'rsi', 'Rhsim08G0250400' => 'rsi', 'Sabra02G0131000' => 'sbr', 'Sabra06G0066300' => 'sbr', 'Sabra08G0115500' => 'sbr', 'Sabra09G0023900' => 'sbr', 'Sabra10G0054000' => 'sbr', 'Sabra14G0081500' => 'sbr', 'Sabra16G0147100' => 'sbr', 'SalBow2G2957' => 'sbo', 'SalBow4G3320' => 'sbo', 'SalBow8G1894' => 'sbo', 'Sc07g0007950' => 'sci', 'Sc12g0001360' => 'sci', 'Sc13g0004330' => 'sci', 'Sc20g0005010' => 'sci', 'Sed0000361' => 'sed', 'Sed0001706' => 'sed', 'Sed0002422' => 'sed', 'Sed0004029' => 'sed', 'Sed0004602' => 'sed', 'Sed0004943' => 'sed', 'Sed0008646' => 'sed', 'Sed0023313' => 'sed', 'Sed0024843' => 'sed', 'SEGI_00081' => 'sgi', 'SEGI_00947' => 'sgi', 'SEGI_04046' => 'sgi', 'SEGI_06880' => 'sgi', 'SEGI_09736' => 'sgi', 'SEGI_12741' => 'sgi', 'SEGI_14530' => 'sgi', 'SEGI_20705' => 'sgi', 'SEGI_26088' => 'sgi', 'SEGI_28323' => 'sgi', 'SEGI_33343' => 'sgi', 'SGA_v2.0_scaffold126G33775' => 'sas', 'SGA_v2.0_scaffold2G01337' => 'sas', 'SGA_v2.0_scaffold38G15006' => 'sas', 'SGA_v2.0_scaffold39G15264' => 'sas', 'SGA_v2.0_scaffold453G51880' => 'sas', 'SHI12696' => 'shi', 'SMO367G1096' => 'smo', 'Solyc01g068630.3' => 'sly', 'Solyc05g011880.3' => 'sly', 'Solyc06g076300.3' => 'sly', 'Solyc09g010940.4' => 'sly', 'Solyc09g075890.3' => 'sly', 'Sopen01g030560' => 'spe', 'Sopen05g006630' => 'spe', 'Sopen06g032720' => 'spe', 'Sopen09g005660' => 'spe', 'Sopen09g030690' => 'spe', 'Sp4g14540' => 'spa', 'Sp4g20030' => 'spa', 'Sp5g01320' => 'spa', 'Sp6g21170' => 'spa', 'Sp6g21180' => 'spa', 'Sp6g21190' => 'spa', 'Sp6g40220' => 'spa', 'TAR362G0122' => 'tar', 'TAR362G1338' => 'tar', 'TAR369G0590' => 'tar', 'TAR371G0824' => 'tar', 'TAR622G1429' => 'tar', 'TAR623G0734' => 'tar', 'TAR625G0441' => 'tar', 'TAR629G0976' => 'tar', 'TAR633G1195' => 'tar', 'TAR636G2660' => 'tar', 'THA.LOC104799440' => 'tha', 'THA.LOC104800966' => 'tha', 'THA.LOC104806559' => 'tha', 'THA.LOC104810765' => 'tha', 'THA.LOC104816266' => 'tha', 'THA.LOC104817419' => 'tha', 'THA.LOC104827021' => 'tha', 'Thecc.01G327400' => 'tca', 'Thecc.04G229200' => 'tca', 'Thecc.05G037400' => 'tca', 'Thecc.09G318600' => 'tca', 'Thecc.09G318700' => 'tca', 'Thhalv10006238m.g' => 'esa', 'Thhalv10014321m.g' => 'esa', 'Thhalv10014335m.g' => 'esa', 'Thhalv10015826m.g' => 'esa', 'Thhalv10017107m.g' => 'esa', 'Thhalv10017180m.g' => 'esa', 'Thhalv10029339m.g' => 'esa', 'TPR.G1699' => 'tpr', 'TPR.G23609' => 'tpr', 'TPR.G3081' => 'tpr', 'TPR.G40397' => 'tpr', 'TPR.G5522' => 'tpr', 'TPR.G5618' => 'tpr', 'TPR.G5626' => 'tpr', 'TWI09G1632' => 'twi', 'TWI23G1230' => 'twi', 'TWI53G1064' => 'twi', 'TWI59G0751' => 'twi', 'TWI74G0947' => 'twi', 'TWI77G0337' => 'twi', 'TWI79G1254' => 'twi', 'unitig_0.g2341' => 'ugi', 'unitig_26.g10006' => 'ugi', 'unitig_26.g10008' => 'ugi', 'unitig_26.g9192' => 'ugi', 'vmacro14547' => 'vma', 'vmacro15333' => 'vma', 'vmacro18743' => 'vma', 'vmacro20166' => 'vma', 'VMungo0331G0523' => 'vmu', 'VMungo0331G1202' => 'vmu', 'VMungo0720G1228' => 'vmu', 'VMungo0720G1514' => 'vmu', 'VMungo1080G0169' => 'vmu', 'VMungo1127G1475' => 'vmu', 'VMungo1383G1208' => 'vmu', 'VMungo1383G1698' => 'vmu', 'Zm00001eb012270' => 'zma', 'Zm00001eb054100' => 'zma', 'Zm00001eb063350' => 'zma', 'Zm00001eb328560' => 'zma', 'Zm00001eb342820' => 'zma', 'Zm00001eb362210' => 'zma', 'Zm00001eb397730' => 'zma', 'Zm00001eb399750' => 'zma' ), 'gf_id' => 'HOM05D000959', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000959' ), 'data_identifier' => 'HOM05D000959', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000959', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '622', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p07100' => 'bna', 'A03p11720' => 'bna', 'A05p08300' => 'bna', 'A05p13380' => 'bna', 'A09p54130' => 'bna', 'A10p16690' => 'bna', 'A10p16700' => 'bna', 'A10p33390' => 'bna', 'Aa31LG10G16020' => 'aar', 'Aa31LG1G11810' => 'aar', 'Aa31LG1G11830' => 'aar', 'Aa31LG1G22510' => 'aar', 'Aa31LG5G4890' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5793' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2310' => 'aag', 'Actinidia08499' => 'ach', 'Actinidia11262' => 'ach', 'Actinidia23926' => 'ach', 'Actinidia34420' => 'ach', 'Actinidia36970' => 'ach', 'Ah.02g111220' => 'amhyb', 'Ah.15g097750' => 'amhyb', 'AL4G27500' => 'aly', 'AL6G11470' => 'aly', 'AL8G35950' => 'aly', 'AL8G35960' => 'aly', 'AL8G35970' => 'aly', 'Aqoxy1G00912' => 'aox', 'Aqoxy2G02253' => 'aox', 'Aqoxy2G02411' => 'aox', 'Aqoxy5G00485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BZ66YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K8ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM4FUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6BF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HFV7XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25JBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0YNNV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MAKK6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P70IT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP2Z6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V61LZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YWP64R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3S9AI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7PGHH' => 'arhy', 'AT2G32150' => 'ath', 'AT3G62040' => 'ath', 'AT5G02230' => 'ath', 'AT5G59480' => 'ath', 'AT5G59490' => 'ath', 'ATR0332G060' => 'atr', 'ATR0559G190' => 'atr', 'ATR0693G294' => 'atr', 'Atru.chr3.3975' => 'acertr', 'Atru.chr3.3976' => 'acertr', 'Atru.chr3.3977' => 'acertr', 'Atru.chr4.2498' => 'acertr', 'Atru.chr5.838' => 'acertr', 'Atru.chr8.1990' => 'acertr', 'Atru.chr8.1991' => 'acertr', 'Atru.chr8.1992' => 'acertr', 'AUR62001759' => 'cqu', 'AUR62009545' => 'cqu', 'AUR62010474' => 'cqu', 'AUR62025820' => 'cqu', 'AUR62030422' => 'cqu', 'AUR62033605' => 'cqu', 'AUR62038615' => 'cqu', 'AUR62041347' => 'cqu', 'BcaB01g04574' => 'bca', 'BcaB02g09263' => 'bca', 'BcaB02g10453' => 'bca', 'BcaB05g22513' => 'bca', 'BcaB08g36253' => 'bca', 'BcaB08g36254' => 'bca', 'BcaC01g06519' => 'bca', 'BcaC02g11889' => 'bca', 'BcaC03g14010' => 'bca', 'BcaC03g18439' => 'bca', 'BcaC04g19765' => 'bca', 'BcaC09g48432' => 'bca', 'BcaNung07302' => 'bca', 'BolC2t06040H' => 'bol', 'BolC2t07346H' => 'bol', 'BolC3t13817H' => 'bol', 'BolC4t22625H' => 'bol', 'BolC4t23297H' => 'bol', 'BolC8t51278H' => 'bol', 'BolC9t58050H' => 'bol', 'BolC9t58051H' => 'bol', 'BolC9t60163H' => 'bol', 'BraA02t04712Z' => 'bra', 'BraA02t05791Z' => 'bra', 'BraA03t10483Z' => 'bra', 'BraA05t19795Z' => 'bra', 'BraA05t20276Z' => 'bra', 'BraA09t40827Z' => 'bra', 'BraA10t43750Z' => 'bra', 'BraA10t43751Z' => 'bra', 'BraA10t45370Z' => 'bra', 'C02p00400' => 'bna', 'C02p12460' => 'bna', 'C03p13680' => 'bna', 'C04p10270' => 'bna', 'C04p17500' => 'bna', 'C08p37010' => 'bna', 'C09p51880' => 'bna', 'C09p51890' => 'bna', 'C09p74300' => 'bna', 'CAN.G179.26' => 'can', 'CAN.G3384.1' => 'can', 'CAN.G394.68' => 'can', 'CAN.G907.13' => 'can', 'CANSAT11G0012' => 'cansat', 'CANSAT25G1586' => 'cansat', 'CANSAT35G0735' => 'cansat', 'CANSAT54G0556' => 'cansat', 'CANSAT64G0356' => 'cansat', 'CANSAT78G2042' => 'cansat', 'CARHR125920' => 'chi', 'CARHR131910' => 'chi', 'CARHR172390' => 'chi', 'CARHR211140' => 'chi', 'CARHR285850' => 'chi', 'CARHR285860' => 'chi', 'Carub.0004s1347' => 'cru', 'Carub.0004s1960' => 'cru', 'Carub.0005s2880' => 'cru', 'Carub.0006s0107' => 'cru', 'Carub.0008s2015' => 'cru', 'Carub.0008s2016' => 'cru', 'Carub.0008s2017' => 'cru', 'Ca_01315_v3' => 'car', 'Ca_05063_v3' => 'car', 'Ca_10231_v3' => 'car', 'Ca_10913_v3' => 'car', 'Ca_19156_v3' => 'car', 'Ca_23644_v3' => 'car', 'Ca_26735_v3' => 'car', 'Cc01_g13130' => 'ccan', 'Cc02_g21690' => 'ccan', 'Cc03_g03600' => 'ccan', 'Cc06_g02510' => 'ccan', 'CDE02G1265' => 'cde', 'CDE05G0415' => 'cde', 'CDE08G1082' => 'cde', 'Cfa005780' => 'cfa', 'Cfa011522' => 'cfa', 'Cfa011523' => 'cfa', 'Cfa015627' => 'cfa', 'Cfa017359' => 'cfa', 'Ciclev10005687m.g' => 'ccl', 'Ciclev10012173m.g' => 'ccl', 'Ciclev10021621m.g' => 'ccl', 'Ciclev10028968m.g' => 'ccl', 'Ciclev10029907m.g' => 'ccl', 'CiPaw.01G164800' => 'cil', 'CiPaw.07G083700' => 'cil', 'CiPaw.07G127000' => 'cil', 'CiPaw.07G136900' => 'cil', 'CiPaw.08G081700' => 'cil', 'CiPaw.09G194600' => 'cil', 'CiPaw.10G146500' => 'cil', 'CiPaw.13G091500' => 'cil', 'CiPaw.13G091600' => 'cil', 'ClCG00G003390' => 'cla', 'ClCG01G007220' => 'cla', 'ClCG03G001370' => 'cla', 'ClCG04G008100' => 'cla', 'ClCG06G006110' => 'cla', 'ClCG06G006130' => 'cla', 'ClCG10G021210' => 'cla', 'COL.COLO4_07648' => 'col', 'COL.COLO4_07650' => 'col', 'COL.COLO4_07651' => 'col', 'COL.COLO4_14780' => 'col', 'COL.COLO4_18546' => 'col', 'COL.COLO4_18547' => 'col', 'COL.COLO4_23103' => 'col', 'COL.COLO4_30419' => 'col', 'COL.COLO4_34232' => 'col', 'Cpa.g.sc169.20' => 'cpa', 'Cpa.g.sc57.45' => 'cpa', 'Cpa.g.sc58.124' => 'cpa', 'Cpa.g.sc58.125' => 'cpa', 'Cpa.g.sc81.118' => 'cpa', 'Cpa.g.sc81.119' => 'cpa', 'Cre12.g524700' => 'cre', 'CsaV3_1G034430' => 'csa', 'CsaV3_1G034440' => 'csa', 'CsaV3_1G034450' => 'csa', 'CsaV3_3G034830' => 'csa', 'CsaV3_4G025090' => 'csa', 'CsaV3_5G018660' => 'csa', 'CsaV3_6G038160' => 'csa', 'CSS0003447' => 'camsi', 'CSS0017840' => 'camsi', 'CSS0019260' => 'camsi', 'CSS0040375' => 'camsi', 'CSS0042533' => 'camsi', 'DCAR_005960' => 'dca', 'DCAR_012104' => 'dca', 'DCAR_012105' => 'dca', 'DCAR_012293' => 'dca', 'DCAR_015632' => 'dca', 'DCAR_024602' => 'dca', 'DCAR_028752' => 'dca', 'Dinv06261' => 'din', 'Dinv13982' => 'din', 'Dinv17029' => 'din', 'Dinv18463' => 'din', 'Dinv33181' => 'din', 'Dinv35585' => 'din', 'Dinv37161' => 'din', 'Dinv42977' => 'din', 'Dinv43122' => 'din', 'Dinv44517' => 'din', 'Duzib093G0256' => 'dzi', 'Duzib106G1254' => 'dzi', 'Duzib128G1789' => 'dzi', 'Duzib133G0633' => 'dzi', 'Duzib138G0510' => 'dzi', 'Duzib150G1084' => 'dzi', 'Duzib168G0488' => 'dzi', 'Duzib168G1523' => 'dzi', 'Duzib170G0133' => 'dzi', 'ECA234G1433' => 'eca', 'ECA236G1432' => 'eca', 'ECA236G2256' => 'eca', 'ECA236G2365' => 'eca', 'ECA236G4830' => 'eca', 'ECA248G1505' => 'eca', 'EL10Ac3g06431' => 'bvu', 'EL10Ac5g12577' => 'bvu', 'EL10Ac6g13533' => 'bvu', 'EL10Ac7g16045' => 'bvu', 'Eucgr.A01281' => 'egr', 'Eucgr.B02326' => 'egr', 'Eucgr.H03532' => 'egr', 'Eucgr.K00553' => 'egr', 'Eucgr.K03116' => 'egr', 'FAN02G3963' => 'fan', 'FAN05G0438' => 'fan', 'FAN09G2434' => 'fan', 'FAN12G3984' => 'fan', 'FAN14G0798' => 'fan', 'FAN17G0652' => 'fan', 'FAN19G1988' => 'fan', 'FAN22G0632' => 'fan', 'FAN23G0387' => 'fan', 'FAN26G1323' => 'fan', 'FAN28G0666' => 'fan', 'FvH4_1g26080' => 'fve', 'FvH4_3g36780' => 'fve', 'FvH4_4g15270' => 'fve', 'FvH4_6g13490' => 'fve', 'Glyma.01G098700' => 'gma', 'Glyma.03G065900' => 'gma', 'Glyma.03G073754' => 'gma', 'Glyma.03G073758' => 'gma', 'Glyma.03G083200' => 'gma', 'Glyma.03G225500' => 'gma', 'Glyma.05G037766' => 'gma', 'Glyma.07G133500' => 'gma', 'Glyma.10G139400' => 'gma', 'Glyma.10G248900' => 'gma', 'Glyma.11G137800' => 'gma', 'Glyma.12G061300' => 'gma', 'Glyma.13G337900' => 'gma', 'Glyma.15G036600' => 'gma', 'Glyma.18G182800' => 'gma', 'Glyma.19G222500' => 'gma', 'Glyma.20G144800' => 'gma', 'Gohir.A01G222000' => 'ghi', 'Gohir.A03G044000' => 'ghi', 'Gohir.A03G044100' => 'ghi', 'Gohir.A04G083100' => 'ghi', 'Gohir.A07G127200' => 'ghi', 'Gohir.A07G132400' => 'ghi', 'Gohir.A08G000700' => 'ghi', 'Gohir.A11G327300' => 'ghi', 'Gohir.D01G211500' => 'ghi', 'Gohir.D03G123400' => 'ghi', 'Gohir.D03G123500' => 'ghi', 'Gohir.D04G121800' => 'ghi', 'Gohir.D07G131500' => 'ghi', 'Gohir.D07G136600' => 'ghi', 'Gohir.D08G011600' => 'ghi', 'Gohir.D11G346200' => 'ghi', 'Gorai.001G142800' => 'gra', 'Gorai.001G148700' => 'gra', 'Gorai.002G257300' => 'gra', 'Gorai.003G130000' => 'gra', 'Gorai.003G130100' => 'gra', 'Gorai.004G005300' => 'gra', 'Gorai.007G376500' => 'gra', 'Gorai.012G104700' => 'gra', 'GSVIVG01017946001' => 'vvi', 'GSVIVG01024928001' => 'vvi', 'GSVIVG01028227001' => 'vvi', 'GSVIVG01034151001' => 'vvi', 'HanXRQChr05g0135031' => 'han', 'HanXRQChr05g0135041' => 'han', 'HanXRQChr05g0140021' => 'han', 'HanXRQChr06g0178981' => 'han', 'HanXRQChr07g0188251' => 'han', 'HanXRQChr08g0235311' => 'han', 'HanXRQChr09g0271011' => 'han', 'HanXRQChr10g0293321' => 'han', 'HanXRQChr13g0388171' => 'han', 'Haze_00916' => 'cav', 'Haze_05063' => 'cav', 'Haze_20814' => 'cav', 'Haze_24128' => 'cav', 'Hma1.2p1_0745F.1_g212010' => 'hma', 'Hma1.2p1_0757F.1_g213260' => 'hma', 'Hma1.2p1_0936F.1_g238840' => 'hma', 'Hma1.2p1_1735F.1_g299890' => 'hma', 'Hma1.2p1_1861F.1_g305685' => 'hma', 'HPP92_003397' => 'vpl', 'HPP92_012597' => 'vpl', 'HPP92_015520' => 'vpl', 'HPP92_015539' => 'vpl', 'HPP92_020373' => 'vpl', 'Hund04938' => 'sun', 'Hund10677' => 'sun', 'Hund11033' => 'sun', 'Hund12155' => 'sun', 'Lalb_Chr01g0022551' => 'lal', 'Lalb_Chr03g0042341' => 'lal', 'Lalb_Chr07g0192931' => 'lal', 'Lalb_Chr12g0209551' => 'lal', 'Lalb_Chr19g0125251' => 'lal', 'Lalb_Chr19g0137891' => 'lal', 'Lalb_Chr21g0304641' => 'lal', 'Lalb_Chr21g0309881' => 'lal', 'Lj1A5T12' => 'lonja', 'Lj1C148G10' => 'lonja', 'Lj2A93T83' => 'lonja', 'Lj3A738G68' => 'lonja', 'Lj3C966T1' => 'lonja', 'Lj3g0018958' => 'lja', 'Lj3g0021831' => 'lja', 'Lj3g0025443' => 'lja', 'Lj4g0026809' => 'lja', 'Lj5g0012558' => 'lja', 'Lj5g0021586' => 'lja', 'Lsat_1_v5_gn_5_156840' => 'lsa', 'Lsat_1_v5_gn_8_73460' => 'lsa', 'Lsat_1_v5_gn_8_73481' => 'lsa', 'Lsat_1_v5_gn_9_31601' => 'lsa', 'Lsat_1_v5_gn_9_77320' => 'lsa', 'Manes.01G171300' => 'mes', 'Manes.01G171400' => 'mes', 'Manes.01G236100' => 'mes', 'Manes.02G130500' => 'mes', 'Manes.02G130600' => 'mes', 'Manes.03G180200' => 'mes', 'Manes.05G007000' => 'mes', 'Manes.08G084400' => 'mes', 'Manes.09G092600' => 'mes', 'Manes.15G027900' => 'mes', 'MBI04_g40948_MAGBIO' => 'mbi', 'MBI14_g12123_MAGBIO' => 'mbi', 'MBI18_g28915_MAGBIO' => 'mbi', 'MCO09G053' => 'mco', 'MCO11G782' => 'mco', 'MCO15G215' => 'mco', 'MD03G1088500' => 'mdo', 'MD03G1088600' => 'mdo', 'MD04G1130800' => 'mdo', 'MD09G1291700' => 'mdo', 'MD11G1097500' => 'mdo', 'MD11G1097600' => 'mdo', 'MD12G1143900' => 'mdo', 'MD13G1191400' => 'mdo', 'MD16G1191500' => 'mdo', 'Medtr1g085570' => 'mtr', 'Medtr1g104610' => 'mtr', 'Medtr2g097520' => 'mtr', 'Medtr4g021800' => 'mtr', 'Medtr4g021825' => 'mtr', 'Medtr4g064270' => 'mtr', 'Medtr4g064380' => 'mtr', 'Medtr7g062150' => 'mtr', 'MELO3C003138.2' => 'cme', 'MELO3C005187.2' => 'cme', 'MELO3C009252.2' => 'cme', 'MELO3C014481.2' => 'cme', 'MELO3C020616.2' => 'cme', 'MELO3C020617.2' => 'cme', 'MELO3C020618.2' => 'cme', 'Migut.G00328' => 'egut', 'Migut.J00320' => 'egut', 'Migut.L01000' => 'egut', 'Migut.L01953' => 'egut', 'MSTRG.10253' => 'ama', 'MSTRG.19077' => 'ama', 'MSTRG.26780' => 'ama', 'MSTRG.4023' => 'ama', 'MSTRG.5655' => 'ama', 'MSTRG.9992' => 'ama', 'Nitab4.5_0000043g0310' => 'nta', 'Nitab4.5_0000463g0080' => 'nta', 'Nitab4.5_0000705g0170' => 'nta', 'Nitab4.5_0001326g0060' => 'nta', 'Nitab4.5_0001628g0030' => 'nta', 'Nitab4.5_0002103g0110' => 'nta', 'Nitab4.5_0002946g0030' => 'nta', 'Nitab4.5_0004639g0030' => 'nta', 'Nn2g11149' => 'nnu', 'Nn2g13389' => 'nnu', 'Nn4g25326' => 'nnu', 'Nn4g26290' => 'nnu', 'Nn5g29865' => 'nnu', 'Oeu004163.1' => 'oeu', 'Oeu006901.1' => 'oeu', 'Oeu010096.1' => 'oeu', 'Oeu024340.1' => 'oeu', 'Oeu048369.1' => 'oeu', 'Os01g0973000' => 'osa', 'Os03g0273800' => 'osa', 'Os03g0701200' => 'osa', 'Os03g0834050' => 'osa', 'Os07g0634400' => 'osa', 'Peaxi162Scf00092g01414' => 'pax', 'Peaxi162Scf00165g00818' => 'pax', 'Peaxi162Scf00309g00516' => 'pax', 'Peaxi162Scf00774g00218' => 'pax', 'PGR004G1824' => 'pgr', 'PGR004G2606' => 'pgr', 'PGR031G2716' => 'pgr', 'PGR102G2460' => 'pgr', 'PGR142G2599' => 'pgr', 'PGSC0003DMG400000843' => 'stu', 'PGSC0003DMG400008829' => 'stu', 'PGSC0003DMG400030418' => 'stu', 'PGSC0003DMG400031834' => 'stu', 'PGSC0003DMG401028300' => 'stu', 'PGSC0003DMG402028300' => 'stu', 'Phvul.001G219300' => 'pvu', 'Phvul.007G056000' => 'pvu', 'Phvul.007G208000' => 'pvu', 'Phvul.008G119500' => 'pvu', 'Phvul.010G011200' => 'pvu', 'Phvul.010G014800' => 'pvu', 'Phvul.011G062900' => 'pvu', 'Phvul.L007043' => 'pvu', 'Potri.001G242300' => 'ptr', 'Potri.002G185300' => 'ptr', 'Potri.006G086900' => 'ptr', 'Potri.008G151700' => 'ptr', 'Potri.009G033500' => 'ptr', 'Potri.010G089300' => 'ptr', 'Potri.014G110800' => 'ptr', 'Pp3c27_8130' => 'ppa', 'Pp3c6_27410' => 'ppa', 'PRCOL_00001659' => 'pco', 'PRCOL_00001927' => 'pco', 'PRCOL_00003649' => 'pco', 'Prupe.1G011600' => 'ppe', 'Prupe.3G000800' => 'ppe', 'Prupe.3G001100' => 'ppe', 'Prupe.6G072700' => 'ppe', 'Prupe.6G072800' => 'ppe', 'Prupe.6G257300' => 'ppe', 'Prupe.8G033000' => 'ppe', 'Psat0s2633g0080' => 'psa', 'Psat0s3396g0080' => 'psa', 'Psat0s3396g0200' => 'psa', 'Psat3g139080' => 'psa', 'Psat5g285080' => 'psa', 'Psat6g157760' => 'psa', 'Psat6g208440' => 'psa', 'Psat7g215320' => 'psa', 'Psat7g215400' => 'psa', 'Psat7g235600' => 'psa', 'Psat7g235760' => 'psa', 'PSO063G4603' => 'pso', 'PSO210G0182' => 'pso', 'PSO210G0196' => 'pso', 'PSO339G0394' => 'pso', 'PSO339G4127' => 'pso', 'PSO513G0064' => 'pso', 'PSO761G0079' => 'pso', 'QL01p031003' => 'qlo', 'QL01p031078' => 'qlo', 'QL06p003004' => 'qlo', 'QL07p048731' => 'qlo', 'QL09p037427' => 'qlo', 'RcHm_v2.0_Chr3g0466361' => 'rch', 'RcHm_v2.0_Chr3g0485571' => 'rch', 'RcHm_v2.0_Chr4g0416551' => 'rch', 'RcHm_v2.0_Chr5g0065831' => 'rch', 'Rhsim01G0230500' => 'rsi', 'Rhsim05G0194000' => 'rsi', 'Rhsim08G0250400' => 'rsi', 'Sabra02G0131000' => 'sbr', 'Sabra06G0066300' => 'sbr', 'Sabra08G0115500' => 'sbr', 'Sabra09G0023900' => 'sbr', 'Sabra10G0054000' => 'sbr', 'Sabra14G0081500' => 'sbr', 'Sabra16G0147100' => 'sbr', 'SalBow2G2957' => 'sbo', 'SalBow4G3320' => 'sbo', 'SalBow8G1894' => 'sbo', 'Sc07g0007950' => 'sci', 'Sc12g0001360' => 'sci', 'Sc13g0004330' => 'sci', 'Sc20g0005010' => 'sci', 'Sed0000361' => 'sed', 'Sed0001706' => 'sed', 'Sed0002422' => 'sed', 'Sed0004029' => 'sed', 'Sed0004602' => 'sed', 'Sed0004943' => 'sed', 'Sed0008646' => 'sed', 'Sed0023313' => 'sed', 'Sed0024843' => 'sed', 'SEGI_00081' => 'sgi', 'SEGI_00947' => 'sgi', 'SEGI_04046' => 'sgi', 'SEGI_06880' => 'sgi', 'SEGI_09736' => 'sgi', 'SEGI_12741' => 'sgi', 'SEGI_14530' => 'sgi', 'SEGI_20705' => 'sgi', 'SEGI_26088' => 'sgi', 'SEGI_28323' => 'sgi', 'SEGI_33343' => 'sgi', 'SGA_v2.0_scaffold126G33775' => 'sas', 'SGA_v2.0_scaffold2G01337' => 'sas', 'SGA_v2.0_scaffold38G15006' => 'sas', 'SGA_v2.0_scaffold39G15264' => 'sas', 'SGA_v2.0_scaffold453G51880' => 'sas', 'SHI12696' => 'shi', 'SMO367G1096' => 'smo', 'Solyc01g068630.3' => 'sly', 'Solyc05g011880.3' => 'sly', 'Solyc06g076300.3' => 'sly', 'Solyc09g010940.4' => 'sly', 'Solyc09g075890.3' => 'sly', 'Sopen01g030560' => 'spe', 'Sopen05g006630' => 'spe', 'Sopen06g032720' => 'spe', 'Sopen09g005660' => 'spe', 'Sopen09g030690' => 'spe', 'Sp4g14540' => 'spa', 'Sp4g20030' => 'spa', 'Sp5g01320' => 'spa', 'Sp6g21170' => 'spa', 'Sp6g21180' => 'spa', 'Sp6g21190' => 'spa', 'Sp6g40220' => 'spa', 'TAR362G0122' => 'tar', 'TAR362G1338' => 'tar', 'TAR369G0590' => 'tar', 'TAR371G0824' => 'tar', 'TAR622G1429' => 'tar', 'TAR623G0734' => 'tar', 'TAR625G0441' => 'tar', 'TAR629G0976' => 'tar', 'TAR633G1195' => 'tar', 'TAR636G2660' => 'tar', 'THA.LOC104799440' => 'tha', 'THA.LOC104800966' => 'tha', 'THA.LOC104806559' => 'tha', 'THA.LOC104810765' => 'tha', 'THA.LOC104816266' => 'tha', 'THA.LOC104817419' => 'tha', 'THA.LOC104827021' => 'tha', 'Thecc.01G327400' => 'tca', 'Thecc.04G229200' => 'tca', 'Thecc.05G037400' => 'tca', 'Thecc.09G318600' => 'tca', 'Thecc.09G318700' => 'tca', 'Thhalv10006238m.g' => 'esa', 'Thhalv10014321m.g' => 'esa', 'Thhalv10014335m.g' => 'esa', 'Thhalv10015826m.g' => 'esa', 'Thhalv10017107m.g' => 'esa', 'Thhalv10017180m.g' => 'esa', 'Thhalv10029339m.g' => 'esa', 'TPR.G1699' => 'tpr', 'TPR.G23609' => 'tpr', 'TPR.G3081' => 'tpr', 'TPR.G40397' => 'tpr', 'TPR.G5522' => 'tpr', 'TPR.G5618' => 'tpr', 'TPR.G5626' => 'tpr', 'TWI09G1632' => 'twi', 'TWI23G1230' => 'twi', 'TWI53G1064' => 'twi', 'TWI59G0751' => 'twi', 'TWI74G0947' => 'twi', 'TWI77G0337' => 'twi', 'TWI79G1254' => 'twi', 'unitig_0.g2341' => 'ugi', 'unitig_26.g10006' => 'ugi', 'unitig_26.g10008' => 'ugi', 'unitig_26.g9192' => 'ugi', 'vmacro14547' => 'vma', 'vmacro15333' => 'vma', 'vmacro18743' => 'vma', 'vmacro20166' => 'vma', 'VMungo0331G0523' => 'vmu', 'VMungo0331G1202' => 'vmu', 'VMungo0720G1228' => 'vmu', 'VMungo0720G1514' => 'vmu', 'VMungo1080G0169' => 'vmu', 'VMungo1127G1475' => 'vmu', 'VMungo1383G1208' => 'vmu', 'VMungo1383G1698' => 'vmu', 'Zm00001eb012270' => 'zma', 'Zm00001eb054100' => 'zma', 'Zm00001eb063350' => 'zma', 'Zm00001eb328560' => 'zma', 'Zm00001eb342820' => 'zma', 'Zm00001eb362210' => 'zma', 'Zm00001eb397730' => 'zma', 'Zm00001eb399750' => 'zma' ) $gf_id = 'HOM05D000959' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000959' ) $data_identifier = 'HOM05D000959' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 5, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 5, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 10, 'mbi' => (int) 3, 'mco' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 2, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 3, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 11, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399750' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000959', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '622', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p07100' => 'bna', 'A03p11720' => 'bna', 'A05p08300' => 'bna', 'A05p13380' => 'bna', 'A09p54130' => 'bna', 'A10p16690' => 'bna', 'A10p16700' => 'bna', 'A10p33390' => 'bna', 'Aa31LG10G16020' => 'aar', 'Aa31LG1G11810' => 'aar', 'Aa31LG1G11830' => 'aar', 'Aa31LG1G22510' => 'aar', 'Aa31LG5G4890' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5793' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2310' => 'aag', 'Actinidia08499' => 'ach', 'Actinidia11262' => 'ach', 'Actinidia23926' => 'ach', 'Actinidia34420' => 'ach', 'Actinidia36970' => 'ach', 'Ah.02g111220' => 'amhyb', 'Ah.15g097750' => 'amhyb', 'AL4G27500' => 'aly', 'AL6G11470' => 'aly', 'AL8G35950' => 'aly', 'AL8G35960' => 'aly', 'AL8G35970' => 'aly', 'Aqoxy1G00912' => 'aox', 'Aqoxy2G02253' => 'aox', 'Aqoxy2G02411' => 'aox', 'Aqoxy5G00485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BZ66YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K8ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM4FUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6BF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HFV7XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25JBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0YNNV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MAKK6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P70IT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP2Z6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V61LZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YWP64R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3S9AI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7PGHH' => 'arhy', 'AT2G32150' => 'ath', 'AT3G62040' => 'ath', 'AT5G02230' => 'ath', 'AT5G59480' => 'ath', 'AT5G59490' => 'ath', 'ATR0332G060' => 'atr', 'ATR0559G190' => 'atr', 'ATR0693G294' => 'atr', 'Atru.chr3.3975' => 'acertr', 'Atru.chr3.3976' => 'acertr', 'Atru.chr3.3977' => 'acertr', 'Atru.chr4.2498' => 'acertr', 'Atru.chr5.838' => 'acertr', 'Atru.chr8.1990' => 'acertr', 'Atru.chr8.1991' => 'acertr', 'Atru.chr8.1992' => 'acertr', 'AUR62001759' => 'cqu', 'AUR62009545' => 'cqu', 'AUR62010474' => 'cqu', 'AUR62025820' => 'cqu', 'AUR62030422' => 'cqu', 'AUR62033605' => 'cqu', 'AUR62038615' => 'cqu', 'AUR62041347' => 'cqu', 'BcaB01g04574' => 'bca', 'BcaB02g09263' => 'bca', 'BcaB02g10453' => 'bca', 'BcaB05g22513' => 'bca', 'BcaB08g36253' => 'bca', 'BcaB08g36254' => 'bca', 'BcaC01g06519' => 'bca', 'BcaC02g11889' => 'bca', 'BcaC03g14010' => 'bca', 'BcaC03g18439' => 'bca', 'BcaC04g19765' => 'bca', 'BcaC09g48432' => 'bca', 'BcaNung07302' => 'bca', 'BolC2t06040H' => 'bol', 'BolC2t07346H' => 'bol', 'BolC3t13817H' => 'bol', 'BolC4t22625H' => 'bol', 'BolC4t23297H' => 'bol', 'BolC8t51278H' => 'bol', 'BolC9t58050H' => 'bol', 'BolC9t58051H' => 'bol', 'BolC9t60163H' => 'bol', 'BraA02t04712Z' => 'bra', 'BraA02t05791Z' => 'bra', 'BraA03t10483Z' => 'bra', 'BraA05t19795Z' => 'bra', 'BraA05t20276Z' => 'bra', 'BraA09t40827Z' => 'bra', 'BraA10t43750Z' => 'bra', 'BraA10t43751Z' => 'bra', 'BraA10t45370Z' => 'bra', 'C02p00400' => 'bna', 'C02p12460' => 'bna', 'C03p13680' => 'bna', 'C04p10270' => 'bna', 'C04p17500' => 'bna', 'C08p37010' => 'bna', 'C09p51880' => 'bna', 'C09p51890' => 'bna', 'C09p74300' => 'bna', 'CAN.G179.26' => 'can', 'CAN.G3384.1' => 'can', 'CAN.G394.68' => 'can', 'CAN.G907.13' => 'can', 'CANSAT11G0012' => 'cansat', 'CANSAT25G1586' => 'cansat', 'CANSAT35G0735' => 'cansat', 'CANSAT54G0556' => 'cansat', 'CANSAT64G0356' => 'cansat', 'CANSAT78G2042' => 'cansat', 'CARHR125920' => 'chi', 'CARHR131910' => 'chi', 'CARHR172390' => 'chi', 'CARHR211140' => 'chi', 'CARHR285850' => 'chi', 'CARHR285860' => 'chi', 'Carub.0004s1347' => 'cru', 'Carub.0004s1960' => 'cru', 'Carub.0005s2880' => 'cru', 'Carub.0006s0107' => 'cru', 'Carub.0008s2015' => 'cru', 'Carub.0008s2016' => 'cru', 'Carub.0008s2017' => 'cru', 'Ca_01315_v3' => 'car', 'Ca_05063_v3' => 'car', 'Ca_10231_v3' => 'car', 'Ca_10913_v3' => 'car', 'Ca_19156_v3' => 'car', 'Ca_23644_v3' => 'car', 'Ca_26735_v3' => 'car', 'Cc01_g13130' => 'ccan', 'Cc02_g21690' => 'ccan', 'Cc03_g03600' => 'ccan', 'Cc06_g02510' => 'ccan', 'CDE02G1265' => 'cde', 'CDE05G0415' => 'cde', 'CDE08G1082' => 'cde', 'Cfa005780' => 'cfa', 'Cfa011522' => 'cfa', 'Cfa011523' => 'cfa', 'Cfa015627' => 'cfa', 'Cfa017359' => 'cfa', 'Ciclev10005687m.g' => 'ccl', 'Ciclev10012173m.g' => 'ccl', 'Ciclev10021621m.g' => 'ccl', 'Ciclev10028968m.g' => 'ccl', 'Ciclev10029907m.g' => 'ccl', 'CiPaw.01G164800' => 'cil', 'CiPaw.07G083700' => 'cil', 'CiPaw.07G127000' => 'cil', 'CiPaw.07G136900' => 'cil', 'CiPaw.08G081700' => 'cil', 'CiPaw.09G194600' => 'cil', 'CiPaw.10G146500' => 'cil', 'CiPaw.13G091500' => 'cil', 'CiPaw.13G091600' => 'cil', 'ClCG00G003390' => 'cla', 'ClCG01G007220' => 'cla', 'ClCG03G001370' => 'cla', 'ClCG04G008100' => 'cla', 'ClCG06G006110' => 'cla', 'ClCG06G006130' => 'cla', 'ClCG10G021210' => 'cla', 'COL.COLO4_07648' => 'col', 'COL.COLO4_07650' => 'col', 'COL.COLO4_07651' => 'col', 'COL.COLO4_14780' => 'col', 'COL.COLO4_18546' => 'col', 'COL.COLO4_18547' => 'col', 'COL.COLO4_23103' => 'col', 'COL.COLO4_30419' => 'col', 'COL.COLO4_34232' => 'col', 'Cpa.g.sc169.20' => 'cpa', 'Cpa.g.sc57.45' => 'cpa', 'Cpa.g.sc58.124' => 'cpa', 'Cpa.g.sc58.125' => 'cpa', 'Cpa.g.sc81.118' => 'cpa', 'Cpa.g.sc81.119' => 'cpa', 'Cre12.g524700' => 'cre', 'CsaV3_1G034430' => 'csa', 'CsaV3_1G034440' => 'csa', 'CsaV3_1G034450' => 'csa', 'CsaV3_3G034830' => 'csa', 'CsaV3_4G025090' => 'csa', 'CsaV3_5G018660' => 'csa', 'CsaV3_6G038160' => 'csa', 'CSS0003447' => 'camsi', 'CSS0017840' => 'camsi', 'CSS0019260' => 'camsi', 'CSS0040375' => 'camsi', 'CSS0042533' => 'camsi', 'DCAR_005960' => 'dca', 'DCAR_012104' => 'dca', 'DCAR_012105' => 'dca', 'DCAR_012293' => 'dca', 'DCAR_015632' => 'dca', 'DCAR_024602' => 'dca', 'DCAR_028752' => 'dca', 'Dinv06261' => 'din', 'Dinv13982' => 'din', 'Dinv17029' => 'din', 'Dinv18463' => 'din', 'Dinv33181' => 'din', 'Dinv35585' => 'din', 'Dinv37161' => 'din', 'Dinv42977' => 'din', 'Dinv43122' => 'din', 'Dinv44517' => 'din', 'Duzib093G0256' => 'dzi', 'Duzib106G1254' => 'dzi', 'Duzib128G1789' => 'dzi', 'Duzib133G0633' => 'dzi', 'Duzib138G0510' => 'dzi', 'Duzib150G1084' => 'dzi', 'Duzib168G0488' => 'dzi', 'Duzib168G1523' => 'dzi', 'Duzib170G0133' => 'dzi', 'ECA234G1433' => 'eca', 'ECA236G1432' => 'eca', 'ECA236G2256' => 'eca', 'ECA236G2365' => 'eca', 'ECA236G4830' => 'eca', 'ECA248G1505' => 'eca', 'EL10Ac3g06431' => 'bvu', 'EL10Ac5g12577' => 'bvu', 'EL10Ac6g13533' => 'bvu', 'EL10Ac7g16045' => 'bvu', 'Eucgr.A01281' => 'egr', 'Eucgr.B02326' => 'egr', 'Eucgr.H03532' => 'egr', 'Eucgr.K00553' => 'egr', 'Eucgr.K03116' => 'egr', 'FAN02G3963' => 'fan', 'FAN05G0438' => 'fan', 'FAN09G2434' => 'fan', 'FAN12G3984' => 'fan', 'FAN14G0798' => 'fan', 'FAN17G0652' => 'fan', 'FAN19G1988' => 'fan', 'FAN22G0632' => 'fan', 'FAN23G0387' => 'fan', 'FAN26G1323' => 'fan', 'FAN28G0666' => 'fan', 'FvH4_1g26080' => 'fve', 'FvH4_3g36780' => 'fve', 'FvH4_4g15270' => 'fve', 'FvH4_6g13490' => 'fve', 'Glyma.01G098700' => 'gma', 'Glyma.03G065900' => 'gma', 'Glyma.03G073754' => 'gma', 'Glyma.03G073758' => 'gma', 'Glyma.03G083200' => 'gma', 'Glyma.03G225500' => 'gma', 'Glyma.05G037766' => 'gma', 'Glyma.07G133500' => 'gma', 'Glyma.10G139400' => 'gma', 'Glyma.10G248900' => 'gma', 'Glyma.11G137800' => 'gma', 'Glyma.12G061300' => 'gma', 'Glyma.13G337900' => 'gma', 'Glyma.15G036600' => 'gma', 'Glyma.18G182800' => 'gma', 'Glyma.19G222500' => 'gma', 'Glyma.20G144800' => 'gma', 'Gohir.A01G222000' => 'ghi', 'Gohir.A03G044000' => 'ghi', 'Gohir.A03G044100' => 'ghi', 'Gohir.A04G083100' => 'ghi', 'Gohir.A07G127200' => 'ghi', 'Gohir.A07G132400' => 'ghi', 'Gohir.A08G000700' => 'ghi', 'Gohir.A11G327300' => 'ghi', 'Gohir.D01G211500' => 'ghi', 'Gohir.D03G123400' => 'ghi', 'Gohir.D03G123500' => 'ghi', 'Gohir.D04G121800' => 'ghi', 'Gohir.D07G131500' => 'ghi', 'Gohir.D07G136600' => 'ghi', 'Gohir.D08G011600' => 'ghi', 'Gohir.D11G346200' => 'ghi', 'Gorai.001G142800' => 'gra', 'Gorai.001G148700' => 'gra', 'Gorai.002G257300' => 'gra', 'Gorai.003G130000' => 'gra', 'Gorai.003G130100' => 'gra', 'Gorai.004G005300' => 'gra', 'Gorai.007G376500' => 'gra', 'Gorai.012G104700' => 'gra', 'GSVIVG01017946001' => 'vvi', 'GSVIVG01024928001' => 'vvi', 'GSVIVG01028227001' => 'vvi', 'GSVIVG01034151001' => 'vvi', 'HanXRQChr05g0135031' => 'han', 'HanXRQChr05g0135041' => 'han', 'HanXRQChr05g0140021' => 'han', 'HanXRQChr06g0178981' => 'han', 'HanXRQChr07g0188251' => 'han', 'HanXRQChr08g0235311' => 'han', 'HanXRQChr09g0271011' => 'han', 'HanXRQChr10g0293321' => 'han', 'HanXRQChr13g0388171' => 'han', 'Haze_00916' => 'cav', 'Haze_05063' => 'cav', 'Haze_20814' => 'cav', 'Haze_24128' => 'cav', 'Hma1.2p1_0745F.1_g212010' => 'hma', 'Hma1.2p1_0757F.1_g213260' => 'hma', 'Hma1.2p1_0936F.1_g238840' => 'hma', 'Hma1.2p1_1735F.1_g299890' => 'hma', 'Hma1.2p1_1861F.1_g305685' => 'hma', 'HPP92_003397' => 'vpl', 'HPP92_012597' => 'vpl', 'HPP92_015520' => 'vpl', 'HPP92_015539' => 'vpl', 'HPP92_020373' => 'vpl', 'Hund04938' => 'sun', 'Hund10677' => 'sun', 'Hund11033' => 'sun', 'Hund12155' => 'sun', 'Lalb_Chr01g0022551' => 'lal', 'Lalb_Chr03g0042341' => 'lal', 'Lalb_Chr07g0192931' => 'lal', 'Lalb_Chr12g0209551' => 'lal', 'Lalb_Chr19g0125251' => 'lal', 'Lalb_Chr19g0137891' => 'lal', 'Lalb_Chr21g0304641' => 'lal', 'Lalb_Chr21g0309881' => 'lal', 'Lj1A5T12' => 'lonja', 'Lj1C148G10' => 'lonja', 'Lj2A93T83' => 'lonja', 'Lj3A738G68' => 'lonja', 'Lj3C966T1' => 'lonja', 'Lj3g0018958' => 'lja', 'Lj3g0021831' => 'lja', 'Lj3g0025443' => 'lja', 'Lj4g0026809' => 'lja', 'Lj5g0012558' => 'lja', 'Lj5g0021586' => 'lja', 'Lsat_1_v5_gn_5_156840' => 'lsa', 'Lsat_1_v5_gn_8_73460' => 'lsa', 'Lsat_1_v5_gn_8_73481' => 'lsa', 'Lsat_1_v5_gn_9_31601' => 'lsa', 'Lsat_1_v5_gn_9_77320' => 'lsa', 'Manes.01G171300' => 'mes', 'Manes.01G171400' => 'mes', 'Manes.01G236100' => 'mes', 'Manes.02G130500' => 'mes', 'Manes.02G130600' => 'mes', 'Manes.03G180200' => 'mes', 'Manes.05G007000' => 'mes', 'Manes.08G084400' => 'mes', 'Manes.09G092600' => 'mes', 'Manes.15G027900' => 'mes', 'MBI04_g40948_MAGBIO' => 'mbi', 'MBI14_g12123_MAGBIO' => 'mbi', 'MBI18_g28915_MAGBIO' => 'mbi', 'MCO09G053' => 'mco', 'MCO11G782' => 'mco', 'MCO15G215' => 'mco', 'MD03G1088500' => 'mdo', 'MD03G1088600' => 'mdo', 'MD04G1130800' => 'mdo', 'MD09G1291700' => 'mdo', 'MD11G1097500' => 'mdo', 'MD11G1097600' => 'mdo', 'MD12G1143900' => 'mdo', 'MD13G1191400' => 'mdo', 'MD16G1191500' => 'mdo', 'Medtr1g085570' => 'mtr', 'Medtr1g104610' => 'mtr', 'Medtr2g097520' => 'mtr', 'Medtr4g021800' => 'mtr', 'Medtr4g021825' => 'mtr', 'Medtr4g064270' => 'mtr', 'Medtr4g064380' => 'mtr', 'Medtr7g062150' => 'mtr', 'MELO3C003138.2' => 'cme', 'MELO3C005187.2' => 'cme', 'MELO3C009252.2' => 'cme', 'MELO3C014481.2' => 'cme', 'MELO3C020616.2' => 'cme', 'MELO3C020617.2' => 'cme', 'MELO3C020618.2' => 'cme', 'Migut.G00328' => 'egut', 'Migut.J00320' => 'egut', 'Migut.L01000' => 'egut', 'Migut.L01953' => 'egut', 'MSTRG.10253' => 'ama', 'MSTRG.19077' => 'ama', 'MSTRG.26780' => 'ama', 'MSTRG.4023' => 'ama', 'MSTRG.5655' => 'ama', 'MSTRG.9992' => 'ama', 'Nitab4.5_0000043g0310' => 'nta', 'Nitab4.5_0000463g0080' => 'nta', 'Nitab4.5_0000705g0170' => 'nta', 'Nitab4.5_0001326g0060' => 'nta', 'Nitab4.5_0001628g0030' => 'nta', 'Nitab4.5_0002103g0110' => 'nta', 'Nitab4.5_0002946g0030' => 'nta', 'Nitab4.5_0004639g0030' => 'nta', 'Nn2g11149' => 'nnu', 'Nn2g13389' => 'nnu', 'Nn4g25326' => 'nnu', 'Nn4g26290' => 'nnu', 'Nn5g29865' => 'nnu', 'Oeu004163.1' => 'oeu', 'Oeu006901.1' => 'oeu', 'Oeu010096.1' => 'oeu', 'Oeu024340.1' => 'oeu', 'Oeu048369.1' => 'oeu', 'Os01g0973000' => 'osa', 'Os03g0273800' => 'osa', 'Os03g0701200' => 'osa', 'Os03g0834050' => 'osa', 'Os07g0634400' => 'osa', 'Peaxi162Scf00092g01414' => 'pax', 'Peaxi162Scf00165g00818' => 'pax', 'Peaxi162Scf00309g00516' => 'pax', 'Peaxi162Scf00774g00218' => 'pax', 'PGR004G1824' => 'pgr', 'PGR004G2606' => 'pgr', 'PGR031G2716' => 'pgr', 'PGR102G2460' => 'pgr', 'PGR142G2599' => 'pgr', 'PGSC0003DMG400000843' => 'stu', 'PGSC0003DMG400008829' => 'stu', 'PGSC0003DMG400030418' => 'stu', 'PGSC0003DMG400031834' => 'stu', 'PGSC0003DMG401028300' => 'stu', 'PGSC0003DMG402028300' => 'stu', 'Phvul.001G219300' => 'pvu', 'Phvul.007G056000' => 'pvu', 'Phvul.007G208000' => 'pvu', 'Phvul.008G119500' => 'pvu', 'Phvul.010G011200' => 'pvu', 'Phvul.010G014800' => 'pvu', 'Phvul.011G062900' => 'pvu', 'Phvul.L007043' => 'pvu', 'Potri.001G242300' => 'ptr', 'Potri.002G185300' => 'ptr', 'Potri.006G086900' => 'ptr', 'Potri.008G151700' => 'ptr', 'Potri.009G033500' => 'ptr', 'Potri.010G089300' => 'ptr', 'Potri.014G110800' => 'ptr', 'Pp3c27_8130' => 'ppa', 'Pp3c6_27410' => 'ppa', 'PRCOL_00001659' => 'pco', 'PRCOL_00001927' => 'pco', 'PRCOL_00003649' => 'pco', 'Prupe.1G011600' => 'ppe', 'Prupe.3G000800' => 'ppe', 'Prupe.3G001100' => 'ppe', 'Prupe.6G072700' => 'ppe', 'Prupe.6G072800' => 'ppe', 'Prupe.6G257300' => 'ppe', 'Prupe.8G033000' => 'ppe', 'Psat0s2633g0080' => 'psa', 'Psat0s3396g0080' => 'psa', 'Psat0s3396g0200' => 'psa', 'Psat3g139080' => 'psa', 'Psat5g285080' => 'psa', 'Psat6g157760' => 'psa', 'Psat6g208440' => 'psa', 'Psat7g215320' => 'psa', 'Psat7g215400' => 'psa', 'Psat7g235600' => 'psa', 'Psat7g235760' => 'psa', 'PSO063G4603' => 'pso', 'PSO210G0182' => 'pso', 'PSO210G0196' => 'pso', 'PSO339G0394' => 'pso', 'PSO339G4127' => 'pso', 'PSO513G0064' => 'pso', 'PSO761G0079' => 'pso', 'QL01p031003' => 'qlo', 'QL01p031078' => 'qlo', 'QL06p003004' => 'qlo', 'QL07p048731' => 'qlo', 'QL09p037427' => 'qlo', 'RcHm_v2.0_Chr3g0466361' => 'rch', 'RcHm_v2.0_Chr3g0485571' => 'rch', 'RcHm_v2.0_Chr4g0416551' => 'rch', 'RcHm_v2.0_Chr5g0065831' => 'rch', 'Rhsim01G0230500' => 'rsi', 'Rhsim05G0194000' => 'rsi', 'Rhsim08G0250400' => 'rsi', 'Sabra02G0131000' => 'sbr', 'Sabra06G0066300' => 'sbr', 'Sabra08G0115500' => 'sbr', 'Sabra09G0023900' => 'sbr', 'Sabra10G0054000' => 'sbr', 'Sabra14G0081500' => 'sbr', 'Sabra16G0147100' => 'sbr', 'SalBow2G2957' => 'sbo', 'SalBow4G3320' => 'sbo', 'SalBow8G1894' => 'sbo', 'Sc07g0007950' => 'sci', 'Sc12g0001360' => 'sci', 'Sc13g0004330' => 'sci', 'Sc20g0005010' => 'sci', 'Sed0000361' => 'sed', 'Sed0001706' => 'sed', 'Sed0002422' => 'sed', 'Sed0004029' => 'sed', 'Sed0004602' => 'sed', 'Sed0004943' => 'sed', 'Sed0008646' => 'sed', 'Sed0023313' => 'sed', 'Sed0024843' => 'sed', 'SEGI_00081' => 'sgi', 'SEGI_00947' => 'sgi', 'SEGI_04046' => 'sgi', 'SEGI_06880' => 'sgi', 'SEGI_09736' => 'sgi', 'SEGI_12741' => 'sgi', 'SEGI_14530' => 'sgi', 'SEGI_20705' => 'sgi', 'SEGI_26088' => 'sgi', 'SEGI_28323' => 'sgi', 'SEGI_33343' => 'sgi', 'SGA_v2.0_scaffold126G33775' => 'sas', 'SGA_v2.0_scaffold2G01337' => 'sas', 'SGA_v2.0_scaffold38G15006' => 'sas', 'SGA_v2.0_scaffold39G15264' => 'sas', 'SGA_v2.0_scaffold453G51880' => 'sas', 'SHI12696' => 'shi', 'SMO367G1096' => 'smo', 'Solyc01g068630.3' => 'sly', 'Solyc05g011880.3' => 'sly', 'Solyc06g076300.3' => 'sly', 'Solyc09g010940.4' => 'sly', 'Solyc09g075890.3' => 'sly', 'Sopen01g030560' => 'spe', 'Sopen05g006630' => 'spe', 'Sopen06g032720' => 'spe', 'Sopen09g005660' => 'spe', 'Sopen09g030690' => 'spe', 'Sp4g14540' => 'spa', 'Sp4g20030' => 'spa', 'Sp5g01320' => 'spa', 'Sp6g21170' => 'spa', 'Sp6g21180' => 'spa', 'Sp6g21190' => 'spa', 'Sp6g40220' => 'spa', 'TAR362G0122' => 'tar', 'TAR362G1338' => 'tar', 'TAR369G0590' => 'tar', 'TAR371G0824' => 'tar', 'TAR622G1429' => 'tar', 'TAR623G0734' => 'tar', 'TAR625G0441' => 'tar', 'TAR629G0976' => 'tar', 'TAR633G1195' => 'tar', 'TAR636G2660' => 'tar', 'THA.LOC104799440' => 'tha', 'THA.LOC104800966' => 'tha', 'THA.LOC104806559' => 'tha', 'THA.LOC104810765' => 'tha', 'THA.LOC104816266' => 'tha', 'THA.LOC104817419' => 'tha', 'THA.LOC104827021' => 'tha', 'Thecc.01G327400' => 'tca', 'Thecc.04G229200' => 'tca', 'Thecc.05G037400' => 'tca', 'Thecc.09G318600' => 'tca', 'Thecc.09G318700' => 'tca', 'Thhalv10006238m.g' => 'esa', 'Thhalv10014321m.g' => 'esa', 'Thhalv10014335m.g' => 'esa', 'Thhalv10015826m.g' => 'esa', 'Thhalv10017107m.g' => 'esa', 'Thhalv10017180m.g' => 'esa', 'Thhalv10029339m.g' => 'esa', 'TPR.G1699' => 'tpr', 'TPR.G23609' => 'tpr', 'TPR.G3081' => 'tpr', 'TPR.G40397' => 'tpr', 'TPR.G5522' => 'tpr', 'TPR.G5618' => 'tpr', 'TPR.G5626' => 'tpr', 'TWI09G1632' => 'twi', 'TWI23G1230' => 'twi', 'TWI53G1064' => 'twi', 'TWI59G0751' => 'twi', 'TWI74G0947' => 'twi', 'TWI77G0337' => 'twi', 'TWI79G1254' => 'twi', 'unitig_0.g2341' => 'ugi', 'unitig_26.g10006' => 'ugi', 'unitig_26.g10008' => 'ugi', 'unitig_26.g9192' => 'ugi', 'vmacro14547' => 'vma', 'vmacro15333' => 'vma', 'vmacro18743' => 'vma', 'vmacro20166' => 'vma', 'VMungo0331G0523' => 'vmu', 'VMungo0331G1202' => 'vmu', 'VMungo0720G1228' => 'vmu', 'VMungo0720G1514' => 'vmu', 'VMungo1080G0169' => 'vmu', 'VMungo1127G1475' => 'vmu', 'VMungo1383G1208' => 'vmu', 'VMungo1383G1698' => 'vmu', 'Zm00001eb012270' => 'zma', 'Zm00001eb054100' => 'zma', 'Zm00001eb063350' => 'zma', 'Zm00001eb328560' => 'zma', 'Zm00001eb342820' => 'zma', 'Zm00001eb362210' => 'zma', 'Zm00001eb397730' => 'zma', 'Zm00001eb399750' => 'zma' ), 'gf_id' => 'HOM05D000959', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000959' ), 'data_identifier' => 'HOM05D000959', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000959', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '622', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p07100' => 'bna', 'A03p11720' => 'bna', 'A05p08300' => 'bna', 'A05p13380' => 'bna', 'A09p54130' => 'bna', 'A10p16690' => 'bna', 'A10p16700' => 'bna', 'A10p33390' => 'bna', 'Aa31LG10G16020' => 'aar', 'Aa31LG1G11810' => 'aar', 'Aa31LG1G11830' => 'aar', 'Aa31LG1G22510' => 'aar', 'Aa31LG5G4890' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5793' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2310' => 'aag', 'Actinidia08499' => 'ach', 'Actinidia11262' => 'ach', 'Actinidia23926' => 'ach', 'Actinidia34420' => 'ach', 'Actinidia36970' => 'ach', 'Ah.02g111220' => 'amhyb', 'Ah.15g097750' => 'amhyb', 'AL4G27500' => 'aly', 'AL6G11470' => 'aly', 'AL8G35950' => 'aly', 'AL8G35960' => 'aly', 'AL8G35970' => 'aly', 'Aqoxy1G00912' => 'aox', 'Aqoxy2G02253' => 'aox', 'Aqoxy2G02411' => 'aox', 'Aqoxy5G00485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BZ66YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K8ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM4FUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6BF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HFV7XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25JBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0YNNV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MAKK6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P70IT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP2Z6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V61LZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YWP64R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3S9AI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7PGHH' => 'arhy', 'AT2G32150' => 'ath', 'AT3G62040' => 'ath', 'AT5G02230' => 'ath', 'AT5G59480' => 'ath', 'AT5G59490' => 'ath', 'ATR0332G060' => 'atr', 'ATR0559G190' => 'atr', 'ATR0693G294' => 'atr', 'Atru.chr3.3975' => 'acertr', 'Atru.chr3.3976' => 'acertr', 'Atru.chr3.3977' => 'acertr', 'Atru.chr4.2498' => 'acertr', 'Atru.chr5.838' => 'acertr', 'Atru.chr8.1990' => 'acertr', 'Atru.chr8.1991' => 'acertr', 'Atru.chr8.1992' => 'acertr', 'AUR62001759' => 'cqu', 'AUR62009545' => 'cqu', 'AUR62010474' => 'cqu', 'AUR62025820' => 'cqu', 'AUR62030422' => 'cqu', 'AUR62033605' => 'cqu', 'AUR62038615' => 'cqu', 'AUR62041347' => 'cqu', 'BcaB01g04574' => 'bca', 'BcaB02g09263' => 'bca', 'BcaB02g10453' => 'bca', 'BcaB05g22513' => 'bca', 'BcaB08g36253' => 'bca', 'BcaB08g36254' => 'bca', 'BcaC01g06519' => 'bca', 'BcaC02g11889' => 'bca', 'BcaC03g14010' => 'bca', 'BcaC03g18439' => 'bca', 'BcaC04g19765' => 'bca', 'BcaC09g48432' => 'bca', 'BcaNung07302' => 'bca', 'BolC2t06040H' => 'bol', 'BolC2t07346H' => 'bol', 'BolC3t13817H' => 'bol', 'BolC4t22625H' => 'bol', 'BolC4t23297H' => 'bol', 'BolC8t51278H' => 'bol', 'BolC9t58050H' => 'bol', 'BolC9t58051H' => 'bol', 'BolC9t60163H' => 'bol', 'BraA02t04712Z' => 'bra', 'BraA02t05791Z' => 'bra', 'BraA03t10483Z' => 'bra', 'BraA05t19795Z' => 'bra', 'BraA05t20276Z' => 'bra', 'BraA09t40827Z' => 'bra', 'BraA10t43750Z' => 'bra', 'BraA10t43751Z' => 'bra', 'BraA10t45370Z' => 'bra', 'C02p00400' => 'bna', 'C02p12460' => 'bna', 'C03p13680' => 'bna', 'C04p10270' => 'bna', 'C04p17500' => 'bna', 'C08p37010' => 'bna', 'C09p51880' => 'bna', 'C09p51890' => 'bna', 'C09p74300' => 'bna', 'CAN.G179.26' => 'can', 'CAN.G3384.1' => 'can', 'CAN.G394.68' => 'can', 'CAN.G907.13' => 'can', 'CANSAT11G0012' => 'cansat', 'CANSAT25G1586' => 'cansat', 'CANSAT35G0735' => 'cansat', 'CANSAT54G0556' => 'cansat', 'CANSAT64G0356' => 'cansat', 'CANSAT78G2042' => 'cansat', 'CARHR125920' => 'chi', 'CARHR131910' => 'chi', 'CARHR172390' => 'chi', 'CARHR211140' => 'chi', 'CARHR285850' => 'chi', 'CARHR285860' => 'chi', 'Carub.0004s1347' => 'cru', 'Carub.0004s1960' => 'cru', 'Carub.0005s2880' => 'cru', 'Carub.0006s0107' => 'cru', 'Carub.0008s2015' => 'cru', 'Carub.0008s2016' => 'cru', 'Carub.0008s2017' => 'cru', 'Ca_01315_v3' => 'car', 'Ca_05063_v3' => 'car', 'Ca_10231_v3' => 'car', 'Ca_10913_v3' => 'car', 'Ca_19156_v3' => 'car', 'Ca_23644_v3' => 'car', 'Ca_26735_v3' => 'car', 'Cc01_g13130' => 'ccan', 'Cc02_g21690' => 'ccan', 'Cc03_g03600' => 'ccan', 'Cc06_g02510' => 'ccan', 'CDE02G1265' => 'cde', 'CDE05G0415' => 'cde', 'CDE08G1082' => 'cde', 'Cfa005780' => 'cfa', 'Cfa011522' => 'cfa', 'Cfa011523' => 'cfa', 'Cfa015627' => 'cfa', 'Cfa017359' => 'cfa', 'Ciclev10005687m.g' => 'ccl', 'Ciclev10012173m.g' => 'ccl', 'Ciclev10021621m.g' => 'ccl', 'Ciclev10028968m.g' => 'ccl', 'Ciclev10029907m.g' => 'ccl', 'CiPaw.01G164800' => 'cil', 'CiPaw.07G083700' => 'cil', 'CiPaw.07G127000' => 'cil', 'CiPaw.07G136900' => 'cil', 'CiPaw.08G081700' => 'cil', 'CiPaw.09G194600' => 'cil', 'CiPaw.10G146500' => 'cil', 'CiPaw.13G091500' => 'cil', 'CiPaw.13G091600' => 'cil', 'ClCG00G003390' => 'cla', 'ClCG01G007220' => 'cla', 'ClCG03G001370' => 'cla', 'ClCG04G008100' => 'cla', 'ClCG06G006110' => 'cla', 'ClCG06G006130' => 'cla', 'ClCG10G021210' => 'cla', 'COL.COLO4_07648' => 'col', 'COL.COLO4_07650' => 'col', 'COL.COLO4_07651' => 'col', 'COL.COLO4_14780' => 'col', 'COL.COLO4_18546' => 'col', 'COL.COLO4_18547' => 'col', 'COL.COLO4_23103' => 'col', 'COL.COLO4_30419' => 'col', 'COL.COLO4_34232' => 'col', 'Cpa.g.sc169.20' => 'cpa', 'Cpa.g.sc57.45' => 'cpa', 'Cpa.g.sc58.124' => 'cpa', 'Cpa.g.sc58.125' => 'cpa', 'Cpa.g.sc81.118' => 'cpa', 'Cpa.g.sc81.119' => 'cpa', 'Cre12.g524700' => 'cre', 'CsaV3_1G034430' => 'csa', 'CsaV3_1G034440' => 'csa', 'CsaV3_1G034450' => 'csa', 'CsaV3_3G034830' => 'csa', 'CsaV3_4G025090' => 'csa', 'CsaV3_5G018660' => 'csa', 'CsaV3_6G038160' => 'csa', 'CSS0003447' => 'camsi', 'CSS0017840' => 'camsi', 'CSS0019260' => 'camsi', 'CSS0040375' => 'camsi', 'CSS0042533' => 'camsi', 'DCAR_005960' => 'dca', 'DCAR_012104' => 'dca', 'DCAR_012105' => 'dca', 'DCAR_012293' => 'dca', 'DCAR_015632' => 'dca', 'DCAR_024602' => 'dca', 'DCAR_028752' => 'dca', 'Dinv06261' => 'din', 'Dinv13982' => 'din', 'Dinv17029' => 'din', 'Dinv18463' => 'din', 'Dinv33181' => 'din', 'Dinv35585' => 'din', 'Dinv37161' => 'din', 'Dinv42977' => 'din', 'Dinv43122' => 'din', 'Dinv44517' => 'din', 'Duzib093G0256' => 'dzi', 'Duzib106G1254' => 'dzi', 'Duzib128G1789' => 'dzi', 'Duzib133G0633' => 'dzi', 'Duzib138G0510' => 'dzi', 'Duzib150G1084' => 'dzi', 'Duzib168G0488' => 'dzi', 'Duzib168G1523' => 'dzi', 'Duzib170G0133' => 'dzi', 'ECA234G1433' => 'eca', 'ECA236G1432' => 'eca', 'ECA236G2256' => 'eca', 'ECA236G2365' => 'eca', 'ECA236G4830' => 'eca', 'ECA248G1505' => 'eca', 'EL10Ac3g06431' => 'bvu', 'EL10Ac5g12577' => 'bvu', 'EL10Ac6g13533' => 'bvu', 'EL10Ac7g16045' => 'bvu', 'Eucgr.A01281' => 'egr', 'Eucgr.B02326' => 'egr', 'Eucgr.H03532' => 'egr', 'Eucgr.K00553' => 'egr', 'Eucgr.K03116' => 'egr', 'FAN02G3963' => 'fan', 'FAN05G0438' => 'fan', 'FAN09G2434' => 'fan', 'FAN12G3984' => 'fan', 'FAN14G0798' => 'fan', 'FAN17G0652' => 'fan', 'FAN19G1988' => 'fan', 'FAN22G0632' => 'fan', 'FAN23G0387' => 'fan', 'FAN26G1323' => 'fan', 'FAN28G0666' => 'fan', 'FvH4_1g26080' => 'fve', 'FvH4_3g36780' => 'fve', 'FvH4_4g15270' => 'fve', 'FvH4_6g13490' => 'fve', 'Glyma.01G098700' => 'gma', 'Glyma.03G065900' => 'gma', 'Glyma.03G073754' => 'gma', 'Glyma.03G073758' => 'gma', 'Glyma.03G083200' => 'gma', 'Glyma.03G225500' => 'gma', 'Glyma.05G037766' => 'gma', 'Glyma.07G133500' => 'gma', 'Glyma.10G139400' => 'gma', 'Glyma.10G248900' => 'gma', 'Glyma.11G137800' => 'gma', 'Glyma.12G061300' => 'gma', 'Glyma.13G337900' => 'gma', 'Glyma.15G036600' => 'gma', 'Glyma.18G182800' => 'gma', 'Glyma.19G222500' => 'gma', 'Glyma.20G144800' => 'gma', 'Gohir.A01G222000' => 'ghi', 'Gohir.A03G044000' => 'ghi', 'Gohir.A03G044100' => 'ghi', 'Gohir.A04G083100' => 'ghi', 'Gohir.A07G127200' => 'ghi', 'Gohir.A07G132400' => 'ghi', 'Gohir.A08G000700' => 'ghi', 'Gohir.A11G327300' => 'ghi', 'Gohir.D01G211500' => 'ghi', 'Gohir.D03G123400' => 'ghi', 'Gohir.D03G123500' => 'ghi', 'Gohir.D04G121800' => 'ghi', 'Gohir.D07G131500' => 'ghi', 'Gohir.D07G136600' => 'ghi', 'Gohir.D08G011600' => 'ghi', 'Gohir.D11G346200' => 'ghi', 'Gorai.001G142800' => 'gra', 'Gorai.001G148700' => 'gra', 'Gorai.002G257300' => 'gra', 'Gorai.003G130000' => 'gra', 'Gorai.003G130100' => 'gra', 'Gorai.004G005300' => 'gra', 'Gorai.007G376500' => 'gra', 'Gorai.012G104700' => 'gra', 'GSVIVG01017946001' => 'vvi', 'GSVIVG01024928001' => 'vvi', 'GSVIVG01028227001' => 'vvi', 'GSVIVG01034151001' => 'vvi', 'HanXRQChr05g0135031' => 'han', 'HanXRQChr05g0135041' => 'han', 'HanXRQChr05g0140021' => 'han', 'HanXRQChr06g0178981' => 'han', 'HanXRQChr07g0188251' => 'han', 'HanXRQChr08g0235311' => 'han', 'HanXRQChr09g0271011' => 'han', 'HanXRQChr10g0293321' => 'han', 'HanXRQChr13g0388171' => 'han', 'Haze_00916' => 'cav', 'Haze_05063' => 'cav', 'Haze_20814' => 'cav', 'Haze_24128' => 'cav', 'Hma1.2p1_0745F.1_g212010' => 'hma', 'Hma1.2p1_0757F.1_g213260' => 'hma', 'Hma1.2p1_0936F.1_g238840' => 'hma', 'Hma1.2p1_1735F.1_g299890' => 'hma', 'Hma1.2p1_1861F.1_g305685' => 'hma', 'HPP92_003397' => 'vpl', 'HPP92_012597' => 'vpl', 'HPP92_015520' => 'vpl', 'HPP92_015539' => 'vpl', 'HPP92_020373' => 'vpl', 'Hund04938' => 'sun', 'Hund10677' => 'sun', 'Hund11033' => 'sun', 'Hund12155' => 'sun', 'Lalb_Chr01g0022551' => 'lal', 'Lalb_Chr03g0042341' => 'lal', 'Lalb_Chr07g0192931' => 'lal', 'Lalb_Chr12g0209551' => 'lal', 'Lalb_Chr19g0125251' => 'lal', 'Lalb_Chr19g0137891' => 'lal', 'Lalb_Chr21g0304641' => 'lal', 'Lalb_Chr21g0309881' => 'lal', 'Lj1A5T12' => 'lonja', 'Lj1C148G10' => 'lonja', 'Lj2A93T83' => 'lonja', 'Lj3A738G68' => 'lonja', 'Lj3C966T1' => 'lonja', 'Lj3g0018958' => 'lja', 'Lj3g0021831' => 'lja', 'Lj3g0025443' => 'lja', 'Lj4g0026809' => 'lja', 'Lj5g0012558' => 'lja', 'Lj5g0021586' => 'lja', 'Lsat_1_v5_gn_5_156840' => 'lsa', 'Lsat_1_v5_gn_8_73460' => 'lsa', 'Lsat_1_v5_gn_8_73481' => 'lsa', 'Lsat_1_v5_gn_9_31601' => 'lsa', 'Lsat_1_v5_gn_9_77320' => 'lsa', 'Manes.01G171300' => 'mes', 'Manes.01G171400' => 'mes', 'Manes.01G236100' => 'mes', 'Manes.02G130500' => 'mes', 'Manes.02G130600' => 'mes', 'Manes.03G180200' => 'mes', 'Manes.05G007000' => 'mes', 'Manes.08G084400' => 'mes', 'Manes.09G092600' => 'mes', 'Manes.15G027900' => 'mes', 'MBI04_g40948_MAGBIO' => 'mbi', 'MBI14_g12123_MAGBIO' => 'mbi', 'MBI18_g28915_MAGBIO' => 'mbi', 'MCO09G053' => 'mco', 'MCO11G782' => 'mco', 'MCO15G215' => 'mco', 'MD03G1088500' => 'mdo', 'MD03G1088600' => 'mdo', 'MD04G1130800' => 'mdo', 'MD09G1291700' => 'mdo', 'MD11G1097500' => 'mdo', 'MD11G1097600' => 'mdo', 'MD12G1143900' => 'mdo', 'MD13G1191400' => 'mdo', 'MD16G1191500' => 'mdo', 'Medtr1g085570' => 'mtr', 'Medtr1g104610' => 'mtr', 'Medtr2g097520' => 'mtr', 'Medtr4g021800' => 'mtr', 'Medtr4g021825' => 'mtr', 'Medtr4g064270' => 'mtr', 'Medtr4g064380' => 'mtr', 'Medtr7g062150' => 'mtr', 'MELO3C003138.2' => 'cme', 'MELO3C005187.2' => 'cme', 'MELO3C009252.2' => 'cme', 'MELO3C014481.2' => 'cme', 'MELO3C020616.2' => 'cme', 'MELO3C020617.2' => 'cme', 'MELO3C020618.2' => 'cme', 'Migut.G00328' => 'egut', 'Migut.J00320' => 'egut', 'Migut.L01000' => 'egut', 'Migut.L01953' => 'egut', 'MSTRG.10253' => 'ama', 'MSTRG.19077' => 'ama', 'MSTRG.26780' => 'ama', 'MSTRG.4023' => 'ama', 'MSTRG.5655' => 'ama', 'MSTRG.9992' => 'ama', 'Nitab4.5_0000043g0310' => 'nta', 'Nitab4.5_0000463g0080' => 'nta', 'Nitab4.5_0000705g0170' => 'nta', 'Nitab4.5_0001326g0060' => 'nta', 'Nitab4.5_0001628g0030' => 'nta', 'Nitab4.5_0002103g0110' => 'nta', 'Nitab4.5_0002946g0030' => 'nta', 'Nitab4.5_0004639g0030' => 'nta', 'Nn2g11149' => 'nnu', 'Nn2g13389' => 'nnu', 'Nn4g25326' => 'nnu', 'Nn4g26290' => 'nnu', 'Nn5g29865' => 'nnu', 'Oeu004163.1' => 'oeu', 'Oeu006901.1' => 'oeu', 'Oeu010096.1' => 'oeu', 'Oeu024340.1' => 'oeu', 'Oeu048369.1' => 'oeu', 'Os01g0973000' => 'osa', 'Os03g0273800' => 'osa', 'Os03g0701200' => 'osa', 'Os03g0834050' => 'osa', 'Os07g0634400' => 'osa', 'Peaxi162Scf00092g01414' => 'pax', 'Peaxi162Scf00165g00818' => 'pax', 'Peaxi162Scf00309g00516' => 'pax', 'Peaxi162Scf00774g00218' => 'pax', 'PGR004G1824' => 'pgr', 'PGR004G2606' => 'pgr', 'PGR031G2716' => 'pgr', 'PGR102G2460' => 'pgr', 'PGR142G2599' => 'pgr', 'PGSC0003DMG400000843' => 'stu', 'PGSC0003DMG400008829' => 'stu', 'PGSC0003DMG400030418' => 'stu', 'PGSC0003DMG400031834' => 'stu', 'PGSC0003DMG401028300' => 'stu', 'PGSC0003DMG402028300' => 'stu', 'Phvul.001G219300' => 'pvu', 'Phvul.007G056000' => 'pvu', 'Phvul.007G208000' => 'pvu', 'Phvul.008G119500' => 'pvu', 'Phvul.010G011200' => 'pvu', 'Phvul.010G014800' => 'pvu', 'Phvul.011G062900' => 'pvu', 'Phvul.L007043' => 'pvu', 'Potri.001G242300' => 'ptr', 'Potri.002G185300' => 'ptr', 'Potri.006G086900' => 'ptr', 'Potri.008G151700' => 'ptr', 'Potri.009G033500' => 'ptr', 'Potri.010G089300' => 'ptr', 'Potri.014G110800' => 'ptr', 'Pp3c27_8130' => 'ppa', 'Pp3c6_27410' => 'ppa', 'PRCOL_00001659' => 'pco', 'PRCOL_00001927' => 'pco', 'PRCOL_00003649' => 'pco', 'Prupe.1G011600' => 'ppe', 'Prupe.3G000800' => 'ppe', 'Prupe.3G001100' => 'ppe', 'Prupe.6G072700' => 'ppe', 'Prupe.6G072800' => 'ppe', 'Prupe.6G257300' => 'ppe', 'Prupe.8G033000' => 'ppe', 'Psat0s2633g0080' => 'psa', 'Psat0s3396g0080' => 'psa', 'Psat0s3396g0200' => 'psa', 'Psat3g139080' => 'psa', 'Psat5g285080' => 'psa', 'Psat6g157760' => 'psa', 'Psat6g208440' => 'psa', 'Psat7g215320' => 'psa', 'Psat7g215400' => 'psa', 'Psat7g235600' => 'psa', 'Psat7g235760' => 'psa', 'PSO063G4603' => 'pso', 'PSO210G0182' => 'pso', 'PSO210G0196' => 'pso', 'PSO339G0394' => 'pso', 'PSO339G4127' => 'pso', 'PSO513G0064' => 'pso', 'PSO761G0079' => 'pso', 'QL01p031003' => 'qlo', 'QL01p031078' => 'qlo', 'QL06p003004' => 'qlo', 'QL07p048731' => 'qlo', 'QL09p037427' => 'qlo', 'RcHm_v2.0_Chr3g0466361' => 'rch', 'RcHm_v2.0_Chr3g0485571' => 'rch', 'RcHm_v2.0_Chr4g0416551' => 'rch', 'RcHm_v2.0_Chr5g0065831' => 'rch', 'Rhsim01G0230500' => 'rsi', 'Rhsim05G0194000' => 'rsi', 'Rhsim08G0250400' => 'rsi', 'Sabra02G0131000' => 'sbr', 'Sabra06G0066300' => 'sbr', 'Sabra08G0115500' => 'sbr', 'Sabra09G0023900' => 'sbr', 'Sabra10G0054000' => 'sbr', 'Sabra14G0081500' => 'sbr', 'Sabra16G0147100' => 'sbr', 'SalBow2G2957' => 'sbo', 'SalBow4G3320' => 'sbo', 'SalBow8G1894' => 'sbo', 'Sc07g0007950' => 'sci', 'Sc12g0001360' => 'sci', 'Sc13g0004330' => 'sci', 'Sc20g0005010' => 'sci', 'Sed0000361' => 'sed', 'Sed0001706' => 'sed', 'Sed0002422' => 'sed', 'Sed0004029' => 'sed', 'Sed0004602' => 'sed', 'Sed0004943' => 'sed', 'Sed0008646' => 'sed', 'Sed0023313' => 'sed', 'Sed0024843' => 'sed', 'SEGI_00081' => 'sgi', 'SEGI_00947' => 'sgi', 'SEGI_04046' => 'sgi', 'SEGI_06880' => 'sgi', 'SEGI_09736' => 'sgi', 'SEGI_12741' => 'sgi', 'SEGI_14530' => 'sgi', 'SEGI_20705' => 'sgi', 'SEGI_26088' => 'sgi', 'SEGI_28323' => 'sgi', 'SEGI_33343' => 'sgi', 'SGA_v2.0_scaffold126G33775' => 'sas', 'SGA_v2.0_scaffold2G01337' => 'sas', 'SGA_v2.0_scaffold38G15006' => 'sas', 'SGA_v2.0_scaffold39G15264' => 'sas', 'SGA_v2.0_scaffold453G51880' => 'sas', 'SHI12696' => 'shi', 'SMO367G1096' => 'smo', 'Solyc01g068630.3' => 'sly', 'Solyc05g011880.3' => 'sly', 'Solyc06g076300.3' => 'sly', 'Solyc09g010940.4' => 'sly', 'Solyc09g075890.3' => 'sly', 'Sopen01g030560' => 'spe', 'Sopen05g006630' => 'spe', 'Sopen06g032720' => 'spe', 'Sopen09g005660' => 'spe', 'Sopen09g030690' => 'spe', 'Sp4g14540' => 'spa', 'Sp4g20030' => 'spa', 'Sp5g01320' => 'spa', 'Sp6g21170' => 'spa', 'Sp6g21180' => 'spa', 'Sp6g21190' => 'spa', 'Sp6g40220' => 'spa', 'TAR362G0122' => 'tar', 'TAR362G1338' => 'tar', 'TAR369G0590' => 'tar', 'TAR371G0824' => 'tar', 'TAR622G1429' => 'tar', 'TAR623G0734' => 'tar', 'TAR625G0441' => 'tar', 'TAR629G0976' => 'tar', 'TAR633G1195' => 'tar', 'TAR636G2660' => 'tar', 'THA.LOC104799440' => 'tha', 'THA.LOC104800966' => 'tha', 'THA.LOC104806559' => 'tha', 'THA.LOC104810765' => 'tha', 'THA.LOC104816266' => 'tha', 'THA.LOC104817419' => 'tha', 'THA.LOC104827021' => 'tha', 'Thecc.01G327400' => 'tca', 'Thecc.04G229200' => 'tca', 'Thecc.05G037400' => 'tca', 'Thecc.09G318600' => 'tca', 'Thecc.09G318700' => 'tca', 'Thhalv10006238m.g' => 'esa', 'Thhalv10014321m.g' => 'esa', 'Thhalv10014335m.g' => 'esa', 'Thhalv10015826m.g' => 'esa', 'Thhalv10017107m.g' => 'esa', 'Thhalv10017180m.g' => 'esa', 'Thhalv10029339m.g' => 'esa', 'TPR.G1699' => 'tpr', 'TPR.G23609' => 'tpr', 'TPR.G3081' => 'tpr', 'TPR.G40397' => 'tpr', 'TPR.G5522' => 'tpr', 'TPR.G5618' => 'tpr', 'TPR.G5626' => 'tpr', 'TWI09G1632' => 'twi', 'TWI23G1230' => 'twi', 'TWI53G1064' => 'twi', 'TWI59G0751' => 'twi', 'TWI74G0947' => 'twi', 'TWI77G0337' => 'twi', 'TWI79G1254' => 'twi', 'unitig_0.g2341' => 'ugi', 'unitig_26.g10006' => 'ugi', 'unitig_26.g10008' => 'ugi', 'unitig_26.g9192' => 'ugi', 'vmacro14547' => 'vma', 'vmacro15333' => 'vma', 'vmacro18743' => 'vma', 'vmacro20166' => 'vma', 'VMungo0331G0523' => 'vmu', 'VMungo0331G1202' => 'vmu', 'VMungo0720G1228' => 'vmu', 'VMungo0720G1514' => 'vmu', 'VMungo1080G0169' => 'vmu', 'VMungo1127G1475' => 'vmu', 'VMungo1383G1208' => 'vmu', 'VMungo1383G1698' => 'vmu', 'Zm00001eb012270' => 'zma', 'Zm00001eb054100' => 'zma', 'Zm00001eb063350' => 'zma', 'Zm00001eb328560' => 'zma', 'Zm00001eb342820' => 'zma', 'Zm00001eb362210' => 'zma', 'Zm00001eb397730' => 'zma', 'Zm00001eb399750' => 'zma' ) $gf_id = 'HOM05D000959' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000959' ) $data_identifier = 'HOM05D000959' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 5, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 5, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 10, 'mbi' => (int) 3, 'mco' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 2, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 3, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 11, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399750' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000959', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '622', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p07100' => 'bna', 'A03p11720' => 'bna', 'A05p08300' => 'bna', 'A05p13380' => 'bna', 'A09p54130' => 'bna', 'A10p16690' => 'bna', 'A10p16700' => 'bna', 'A10p33390' => 'bna', 'Aa31LG10G16020' => 'aar', 'Aa31LG1G11810' => 'aar', 'Aa31LG1G11830' => 'aar', 'Aa31LG1G22510' => 'aar', 'Aa31LG5G4890' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5793' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2310' => 'aag', 'Actinidia08499' => 'ach', 'Actinidia11262' => 'ach', 'Actinidia23926' => 'ach', 'Actinidia34420' => 'ach', 'Actinidia36970' => 'ach', 'Ah.02g111220' => 'amhyb', 'Ah.15g097750' => 'amhyb', 'AL4G27500' => 'aly', 'AL6G11470' => 'aly', 'AL8G35950' => 'aly', 'AL8G35960' => 'aly', 'AL8G35970' => 'aly', 'Aqoxy1G00912' => 'aox', 'Aqoxy2G02253' => 'aox', 'Aqoxy2G02411' => 'aox', 'Aqoxy5G00485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BZ66YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K8ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM4FUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6BF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HFV7XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25JBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0YNNV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MAKK6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P70IT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP2Z6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V61LZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YWP64R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3S9AI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7PGHH' => 'arhy', 'AT2G32150' => 'ath', 'AT3G62040' => 'ath', 'AT5G02230' => 'ath', 'AT5G59480' => 'ath', 'AT5G59490' => 'ath', 'ATR0332G060' => 'atr', 'ATR0559G190' => 'atr', 'ATR0693G294' => 'atr', 'Atru.chr3.3975' => 'acertr', 'Atru.chr3.3976' => 'acertr', 'Atru.chr3.3977' => 'acertr', 'Atru.chr4.2498' => 'acertr', 'Atru.chr5.838' => 'acertr', 'Atru.chr8.1990' => 'acertr', 'Atru.chr8.1991' => 'acertr', 'Atru.chr8.1992' => 'acertr', 'AUR62001759' => 'cqu', 'AUR62009545' => 'cqu', 'AUR62010474' => 'cqu', 'AUR62025820' => 'cqu', 'AUR62030422' => 'cqu', 'AUR62033605' => 'cqu', 'AUR62038615' => 'cqu', 'AUR62041347' => 'cqu', 'BcaB01g04574' => 'bca', 'BcaB02g09263' => 'bca', 'BcaB02g10453' => 'bca', 'BcaB05g22513' => 'bca', 'BcaB08g36253' => 'bca', 'BcaB08g36254' => 'bca', 'BcaC01g06519' => 'bca', 'BcaC02g11889' => 'bca', 'BcaC03g14010' => 'bca', 'BcaC03g18439' => 'bca', 'BcaC04g19765' => 'bca', 'BcaC09g48432' => 'bca', 'BcaNung07302' => 'bca', 'BolC2t06040H' => 'bol', 'BolC2t07346H' => 'bol', 'BolC3t13817H' => 'bol', 'BolC4t22625H' => 'bol', 'BolC4t23297H' => 'bol', 'BolC8t51278H' => 'bol', 'BolC9t58050H' => 'bol', 'BolC9t58051H' => 'bol', 'BolC9t60163H' => 'bol', 'BraA02t04712Z' => 'bra', 'BraA02t05791Z' => 'bra', 'BraA03t10483Z' => 'bra', 'BraA05t19795Z' => 'bra', 'BraA05t20276Z' => 'bra', 'BraA09t40827Z' => 'bra', 'BraA10t43750Z' => 'bra', 'BraA10t43751Z' => 'bra', 'BraA10t45370Z' => 'bra', 'C02p00400' => 'bna', 'C02p12460' => 'bna', 'C03p13680' => 'bna', 'C04p10270' => 'bna', 'C04p17500' => 'bna', 'C08p37010' => 'bna', 'C09p51880' => 'bna', 'C09p51890' => 'bna', 'C09p74300' => 'bna', 'CAN.G179.26' => 'can', 'CAN.G3384.1' => 'can', 'CAN.G394.68' => 'can', 'CAN.G907.13' => 'can', 'CANSAT11G0012' => 'cansat', 'CANSAT25G1586' => 'cansat', 'CANSAT35G0735' => 'cansat', 'CANSAT54G0556' => 'cansat', 'CANSAT64G0356' => 'cansat', 'CANSAT78G2042' => 'cansat', 'CARHR125920' => 'chi', 'CARHR131910' => 'chi', 'CARHR172390' => 'chi', 'CARHR211140' => 'chi', 'CARHR285850' => 'chi', 'CARHR285860' => 'chi', 'Carub.0004s1347' => 'cru', 'Carub.0004s1960' => 'cru', 'Carub.0005s2880' => 'cru', 'Carub.0006s0107' => 'cru', 'Carub.0008s2015' => 'cru', 'Carub.0008s2016' => 'cru', 'Carub.0008s2017' => 'cru', 'Ca_01315_v3' => 'car', 'Ca_05063_v3' => 'car', 'Ca_10231_v3' => 'car', 'Ca_10913_v3' => 'car', 'Ca_19156_v3' => 'car', 'Ca_23644_v3' => 'car', 'Ca_26735_v3' => 'car', 'Cc01_g13130' => 'ccan', 'Cc02_g21690' => 'ccan', 'Cc03_g03600' => 'ccan', 'Cc06_g02510' => 'ccan', 'CDE02G1265' => 'cde', 'CDE05G0415' => 'cde', 'CDE08G1082' => 'cde', 'Cfa005780' => 'cfa', 'Cfa011522' => 'cfa', 'Cfa011523' => 'cfa', 'Cfa015627' => 'cfa', 'Cfa017359' => 'cfa', 'Ciclev10005687m.g' => 'ccl', 'Ciclev10012173m.g' => 'ccl', 'Ciclev10021621m.g' => 'ccl', 'Ciclev10028968m.g' => 'ccl', 'Ciclev10029907m.g' => 'ccl', 'CiPaw.01G164800' => 'cil', 'CiPaw.07G083700' => 'cil', 'CiPaw.07G127000' => 'cil', 'CiPaw.07G136900' => 'cil', 'CiPaw.08G081700' => 'cil', 'CiPaw.09G194600' => 'cil', 'CiPaw.10G146500' => 'cil', 'CiPaw.13G091500' => 'cil', 'CiPaw.13G091600' => 'cil', 'ClCG00G003390' => 'cla', 'ClCG01G007220' => 'cla', 'ClCG03G001370' => 'cla', 'ClCG04G008100' => 'cla', 'ClCG06G006110' => 'cla', 'ClCG06G006130' => 'cla', 'ClCG10G021210' => 'cla', 'COL.COLO4_07648' => 'col', 'COL.COLO4_07650' => 'col', 'COL.COLO4_07651' => 'col', 'COL.COLO4_14780' => 'col', 'COL.COLO4_18546' => 'col', 'COL.COLO4_18547' => 'col', 'COL.COLO4_23103' => 'col', 'COL.COLO4_30419' => 'col', 'COL.COLO4_34232' => 'col', 'Cpa.g.sc169.20' => 'cpa', 'Cpa.g.sc57.45' => 'cpa', 'Cpa.g.sc58.124' => 'cpa', 'Cpa.g.sc58.125' => 'cpa', 'Cpa.g.sc81.118' => 'cpa', 'Cpa.g.sc81.119' => 'cpa', 'Cre12.g524700' => 'cre', 'CsaV3_1G034430' => 'csa', 'CsaV3_1G034440' => 'csa', 'CsaV3_1G034450' => 'csa', 'CsaV3_3G034830' => 'csa', 'CsaV3_4G025090' => 'csa', 'CsaV3_5G018660' => 'csa', 'CsaV3_6G038160' => 'csa', 'CSS0003447' => 'camsi', 'CSS0017840' => 'camsi', 'CSS0019260' => 'camsi', 'CSS0040375' => 'camsi', 'CSS0042533' => 'camsi', 'DCAR_005960' => 'dca', 'DCAR_012104' => 'dca', 'DCAR_012105' => 'dca', 'DCAR_012293' => 'dca', 'DCAR_015632' => 'dca', 'DCAR_024602' => 'dca', 'DCAR_028752' => 'dca', 'Dinv06261' => 'din', 'Dinv13982' => 'din', 'Dinv17029' => 'din', 'Dinv18463' => 'din', 'Dinv33181' => 'din', 'Dinv35585' => 'din', 'Dinv37161' => 'din', 'Dinv42977' => 'din', 'Dinv43122' => 'din', 'Dinv44517' => 'din', 'Duzib093G0256' => 'dzi', 'Duzib106G1254' => 'dzi', 'Duzib128G1789' => 'dzi', 'Duzib133G0633' => 'dzi', 'Duzib138G0510' => 'dzi', 'Duzib150G1084' => 'dzi', 'Duzib168G0488' => 'dzi', 'Duzib168G1523' => 'dzi', 'Duzib170G0133' => 'dzi', 'ECA234G1433' => 'eca', 'ECA236G1432' => 'eca', 'ECA236G2256' => 'eca', 'ECA236G2365' => 'eca', 'ECA236G4830' => 'eca', 'ECA248G1505' => 'eca', 'EL10Ac3g06431' => 'bvu', 'EL10Ac5g12577' => 'bvu', 'EL10Ac6g13533' => 'bvu', 'EL10Ac7g16045' => 'bvu', 'Eucgr.A01281' => 'egr', 'Eucgr.B02326' => 'egr', 'Eucgr.H03532' => 'egr', 'Eucgr.K00553' => 'egr', 'Eucgr.K03116' => 'egr', 'FAN02G3963' => 'fan', 'FAN05G0438' => 'fan', 'FAN09G2434' => 'fan', 'FAN12G3984' => 'fan', 'FAN14G0798' => 'fan', 'FAN17G0652' => 'fan', 'FAN19G1988' => 'fan', 'FAN22G0632' => 'fan', 'FAN23G0387' => 'fan', 'FAN26G1323' => 'fan', 'FAN28G0666' => 'fan', 'FvH4_1g26080' => 'fve', 'FvH4_3g36780' => 'fve', 'FvH4_4g15270' => 'fve', 'FvH4_6g13490' => 'fve', 'Glyma.01G098700' => 'gma', 'Glyma.03G065900' => 'gma', 'Glyma.03G073754' => 'gma', 'Glyma.03G073758' => 'gma', 'Glyma.03G083200' => 'gma', 'Glyma.03G225500' => 'gma', 'Glyma.05G037766' => 'gma', 'Glyma.07G133500' => 'gma', 'Glyma.10G139400' => 'gma', 'Glyma.10G248900' => 'gma', 'Glyma.11G137800' => 'gma', 'Glyma.12G061300' => 'gma', 'Glyma.13G337900' => 'gma', 'Glyma.15G036600' => 'gma', 'Glyma.18G182800' => 'gma', 'Glyma.19G222500' => 'gma', 'Glyma.20G144800' => 'gma', 'Gohir.A01G222000' => 'ghi', 'Gohir.A03G044000' => 'ghi', 'Gohir.A03G044100' => 'ghi', 'Gohir.A04G083100' => 'ghi', 'Gohir.A07G127200' => 'ghi', 'Gohir.A07G132400' => 'ghi', 'Gohir.A08G000700' => 'ghi', 'Gohir.A11G327300' => 'ghi', 'Gohir.D01G211500' => 'ghi', 'Gohir.D03G123400' => 'ghi', 'Gohir.D03G123500' => 'ghi', 'Gohir.D04G121800' => 'ghi', 'Gohir.D07G131500' => 'ghi', 'Gohir.D07G136600' => 'ghi', 'Gohir.D08G011600' => 'ghi', 'Gohir.D11G346200' => 'ghi', 'Gorai.001G142800' => 'gra', 'Gorai.001G148700' => 'gra', 'Gorai.002G257300' => 'gra', 'Gorai.003G130000' => 'gra', 'Gorai.003G130100' => 'gra', 'Gorai.004G005300' => 'gra', 'Gorai.007G376500' => 'gra', 'Gorai.012G104700' => 'gra', 'GSVIVG01017946001' => 'vvi', 'GSVIVG01024928001' => 'vvi', 'GSVIVG01028227001' => 'vvi', 'GSVIVG01034151001' => 'vvi', 'HanXRQChr05g0135031' => 'han', 'HanXRQChr05g0135041' => 'han', 'HanXRQChr05g0140021' => 'han', 'HanXRQChr06g0178981' => 'han', 'HanXRQChr07g0188251' => 'han', 'HanXRQChr08g0235311' => 'han', 'HanXRQChr09g0271011' => 'han', 'HanXRQChr10g0293321' => 'han', 'HanXRQChr13g0388171' => 'han', 'Haze_00916' => 'cav', 'Haze_05063' => 'cav', 'Haze_20814' => 'cav', 'Haze_24128' => 'cav', 'Hma1.2p1_0745F.1_g212010' => 'hma', 'Hma1.2p1_0757F.1_g213260' => 'hma', 'Hma1.2p1_0936F.1_g238840' => 'hma', 'Hma1.2p1_1735F.1_g299890' => 'hma', 'Hma1.2p1_1861F.1_g305685' => 'hma', 'HPP92_003397' => 'vpl', 'HPP92_012597' => 'vpl', 'HPP92_015520' => 'vpl', 'HPP92_015539' => 'vpl', 'HPP92_020373' => 'vpl', 'Hund04938' => 'sun', 'Hund10677' => 'sun', 'Hund11033' => 'sun', 'Hund12155' => 'sun', 'Lalb_Chr01g0022551' => 'lal', 'Lalb_Chr03g0042341' => 'lal', 'Lalb_Chr07g0192931' => 'lal', 'Lalb_Chr12g0209551' => 'lal', 'Lalb_Chr19g0125251' => 'lal', 'Lalb_Chr19g0137891' => 'lal', 'Lalb_Chr21g0304641' => 'lal', 'Lalb_Chr21g0309881' => 'lal', 'Lj1A5T12' => 'lonja', 'Lj1C148G10' => 'lonja', 'Lj2A93T83' => 'lonja', 'Lj3A738G68' => 'lonja', 'Lj3C966T1' => 'lonja', 'Lj3g0018958' => 'lja', 'Lj3g0021831' => 'lja', 'Lj3g0025443' => 'lja', 'Lj4g0026809' => 'lja', 'Lj5g0012558' => 'lja', 'Lj5g0021586' => 'lja', 'Lsat_1_v5_gn_5_156840' => 'lsa', 'Lsat_1_v5_gn_8_73460' => 'lsa', 'Lsat_1_v5_gn_8_73481' => 'lsa', 'Lsat_1_v5_gn_9_31601' => 'lsa', 'Lsat_1_v5_gn_9_77320' => 'lsa', 'Manes.01G171300' => 'mes', 'Manes.01G171400' => 'mes', 'Manes.01G236100' => 'mes', 'Manes.02G130500' => 'mes', 'Manes.02G130600' => 'mes', 'Manes.03G180200' => 'mes', 'Manes.05G007000' => 'mes', 'Manes.08G084400' => 'mes', 'Manes.09G092600' => 'mes', 'Manes.15G027900' => 'mes', 'MBI04_g40948_MAGBIO' => 'mbi', 'MBI14_g12123_MAGBIO' => 'mbi', 'MBI18_g28915_MAGBIO' => 'mbi', 'MCO09G053' => 'mco', 'MCO11G782' => 'mco', 'MCO15G215' => 'mco', 'MD03G1088500' => 'mdo', 'MD03G1088600' => 'mdo', 'MD04G1130800' => 'mdo', 'MD09G1291700' => 'mdo', 'MD11G1097500' => 'mdo', 'MD11G1097600' => 'mdo', 'MD12G1143900' => 'mdo', 'MD13G1191400' => 'mdo', 'MD16G1191500' => 'mdo', 'Medtr1g085570' => 'mtr', 'Medtr1g104610' => 'mtr', 'Medtr2g097520' => 'mtr', 'Medtr4g021800' => 'mtr', 'Medtr4g021825' => 'mtr', 'Medtr4g064270' => 'mtr', 'Medtr4g064380' => 'mtr', 'Medtr7g062150' => 'mtr', 'MELO3C003138.2' => 'cme', 'MELO3C005187.2' => 'cme', 'MELO3C009252.2' => 'cme', 'MELO3C014481.2' => 'cme', 'MELO3C020616.2' => 'cme', 'MELO3C020617.2' => 'cme', 'MELO3C020618.2' => 'cme', 'Migut.G00328' => 'egut', 'Migut.J00320' => 'egut', 'Migut.L01000' => 'egut', 'Migut.L01953' => 'egut', 'MSTRG.10253' => 'ama', 'MSTRG.19077' => 'ama', 'MSTRG.26780' => 'ama', 'MSTRG.4023' => 'ama', 'MSTRG.5655' => 'ama', 'MSTRG.9992' => 'ama', 'Nitab4.5_0000043g0310' => 'nta', 'Nitab4.5_0000463g0080' => 'nta', 'Nitab4.5_0000705g0170' => 'nta', 'Nitab4.5_0001326g0060' => 'nta', 'Nitab4.5_0001628g0030' => 'nta', 'Nitab4.5_0002103g0110' => 'nta', 'Nitab4.5_0002946g0030' => 'nta', 'Nitab4.5_0004639g0030' => 'nta', 'Nn2g11149' => 'nnu', 'Nn2g13389' => 'nnu', 'Nn4g25326' => 'nnu', 'Nn4g26290' => 'nnu', 'Nn5g29865' => 'nnu', 'Oeu004163.1' => 'oeu', 'Oeu006901.1' => 'oeu', 'Oeu010096.1' => 'oeu', 'Oeu024340.1' => 'oeu', 'Oeu048369.1' => 'oeu', 'Os01g0973000' => 'osa', 'Os03g0273800' => 'osa', 'Os03g0701200' => 'osa', 'Os03g0834050' => 'osa', 'Os07g0634400' => 'osa', 'Peaxi162Scf00092g01414' => 'pax', 'Peaxi162Scf00165g00818' => 'pax', 'Peaxi162Scf00309g00516' => 'pax', 'Peaxi162Scf00774g00218' => 'pax', 'PGR004G1824' => 'pgr', 'PGR004G2606' => 'pgr', 'PGR031G2716' => 'pgr', 'PGR102G2460' => 'pgr', 'PGR142G2599' => 'pgr', 'PGSC0003DMG400000843' => 'stu', 'PGSC0003DMG400008829' => 'stu', 'PGSC0003DMG400030418' => 'stu', 'PGSC0003DMG400031834' => 'stu', 'PGSC0003DMG401028300' => 'stu', 'PGSC0003DMG402028300' => 'stu', 'Phvul.001G219300' => 'pvu', 'Phvul.007G056000' => 'pvu', 'Phvul.007G208000' => 'pvu', 'Phvul.008G119500' => 'pvu', 'Phvul.010G011200' => 'pvu', 'Phvul.010G014800' => 'pvu', 'Phvul.011G062900' => 'pvu', 'Phvul.L007043' => 'pvu', 'Potri.001G242300' => 'ptr', 'Potri.002G185300' => 'ptr', 'Potri.006G086900' => 'ptr', 'Potri.008G151700' => 'ptr', 'Potri.009G033500' => 'ptr', 'Potri.010G089300' => 'ptr', 'Potri.014G110800' => 'ptr', 'Pp3c27_8130' => 'ppa', 'Pp3c6_27410' => 'ppa', 'PRCOL_00001659' => 'pco', 'PRCOL_00001927' => 'pco', 'PRCOL_00003649' => 'pco', 'Prupe.1G011600' => 'ppe', 'Prupe.3G000800' => 'ppe', 'Prupe.3G001100' => 'ppe', 'Prupe.6G072700' => 'ppe', 'Prupe.6G072800' => 'ppe', 'Prupe.6G257300' => 'ppe', 'Prupe.8G033000' => 'ppe', 'Psat0s2633g0080' => 'psa', 'Psat0s3396g0080' => 'psa', 'Psat0s3396g0200' => 'psa', 'Psat3g139080' => 'psa', 'Psat5g285080' => 'psa', 'Psat6g157760' => 'psa', 'Psat6g208440' => 'psa', 'Psat7g215320' => 'psa', 'Psat7g215400' => 'psa', 'Psat7g235600' => 'psa', 'Psat7g235760' => 'psa', 'PSO063G4603' => 'pso', 'PSO210G0182' => 'pso', 'PSO210G0196' => 'pso', 'PSO339G0394' => 'pso', 'PSO339G4127' => 'pso', 'PSO513G0064' => 'pso', 'PSO761G0079' => 'pso', 'QL01p031003' => 'qlo', 'QL01p031078' => 'qlo', 'QL06p003004' => 'qlo', 'QL07p048731' => 'qlo', 'QL09p037427' => 'qlo', 'RcHm_v2.0_Chr3g0466361' => 'rch', 'RcHm_v2.0_Chr3g0485571' => 'rch', 'RcHm_v2.0_Chr4g0416551' => 'rch', 'RcHm_v2.0_Chr5g0065831' => 'rch', 'Rhsim01G0230500' => 'rsi', 'Rhsim05G0194000' => 'rsi', 'Rhsim08G0250400' => 'rsi', 'Sabra02G0131000' => 'sbr', 'Sabra06G0066300' => 'sbr', 'Sabra08G0115500' => 'sbr', 'Sabra09G0023900' => 'sbr', 'Sabra10G0054000' => 'sbr', 'Sabra14G0081500' => 'sbr', 'Sabra16G0147100' => 'sbr', 'SalBow2G2957' => 'sbo', 'SalBow4G3320' => 'sbo', 'SalBow8G1894' => 'sbo', 'Sc07g0007950' => 'sci', 'Sc12g0001360' => 'sci', 'Sc13g0004330' => 'sci', 'Sc20g0005010' => 'sci', 'Sed0000361' => 'sed', 'Sed0001706' => 'sed', 'Sed0002422' => 'sed', 'Sed0004029' => 'sed', 'Sed0004602' => 'sed', 'Sed0004943' => 'sed', 'Sed0008646' => 'sed', 'Sed0023313' => 'sed', 'Sed0024843' => 'sed', 'SEGI_00081' => 'sgi', 'SEGI_00947' => 'sgi', 'SEGI_04046' => 'sgi', 'SEGI_06880' => 'sgi', 'SEGI_09736' => 'sgi', 'SEGI_12741' => 'sgi', 'SEGI_14530' => 'sgi', 'SEGI_20705' => 'sgi', 'SEGI_26088' => 'sgi', 'SEGI_28323' => 'sgi', 'SEGI_33343' => 'sgi', 'SGA_v2.0_scaffold126G33775' => 'sas', 'SGA_v2.0_scaffold2G01337' => 'sas', 'SGA_v2.0_scaffold38G15006' => 'sas', 'SGA_v2.0_scaffold39G15264' => 'sas', 'SGA_v2.0_scaffold453G51880' => 'sas', 'SHI12696' => 'shi', 'SMO367G1096' => 'smo', 'Solyc01g068630.3' => 'sly', 'Solyc05g011880.3' => 'sly', 'Solyc06g076300.3' => 'sly', 'Solyc09g010940.4' => 'sly', 'Solyc09g075890.3' => 'sly', 'Sopen01g030560' => 'spe', 'Sopen05g006630' => 'spe', 'Sopen06g032720' => 'spe', 'Sopen09g005660' => 'spe', 'Sopen09g030690' => 'spe', 'Sp4g14540' => 'spa', 'Sp4g20030' => 'spa', 'Sp5g01320' => 'spa', 'Sp6g21170' => 'spa', 'Sp6g21180' => 'spa', 'Sp6g21190' => 'spa', 'Sp6g40220' => 'spa', 'TAR362G0122' => 'tar', 'TAR362G1338' => 'tar', 'TAR369G0590' => 'tar', 'TAR371G0824' => 'tar', 'TAR622G1429' => 'tar', 'TAR623G0734' => 'tar', 'TAR625G0441' => 'tar', 'TAR629G0976' => 'tar', 'TAR633G1195' => 'tar', 'TAR636G2660' => 'tar', 'THA.LOC104799440' => 'tha', 'THA.LOC104800966' => 'tha', 'THA.LOC104806559' => 'tha', 'THA.LOC104810765' => 'tha', 'THA.LOC104816266' => 'tha', 'THA.LOC104817419' => 'tha', 'THA.LOC104827021' => 'tha', 'Thecc.01G327400' => 'tca', 'Thecc.04G229200' => 'tca', 'Thecc.05G037400' => 'tca', 'Thecc.09G318600' => 'tca', 'Thecc.09G318700' => 'tca', 'Thhalv10006238m.g' => 'esa', 'Thhalv10014321m.g' => 'esa', 'Thhalv10014335m.g' => 'esa', 'Thhalv10015826m.g' => 'esa', 'Thhalv10017107m.g' => 'esa', 'Thhalv10017180m.g' => 'esa', 'Thhalv10029339m.g' => 'esa', 'TPR.G1699' => 'tpr', 'TPR.G23609' => 'tpr', 'TPR.G3081' => 'tpr', 'TPR.G40397' => 'tpr', 'TPR.G5522' => 'tpr', 'TPR.G5618' => 'tpr', 'TPR.G5626' => 'tpr', 'TWI09G1632' => 'twi', 'TWI23G1230' => 'twi', 'TWI53G1064' => 'twi', 'TWI59G0751' => 'twi', 'TWI74G0947' => 'twi', 'TWI77G0337' => 'twi', 'TWI79G1254' => 'twi', 'unitig_0.g2341' => 'ugi', 'unitig_26.g10006' => 'ugi', 'unitig_26.g10008' => 'ugi', 'unitig_26.g9192' => 'ugi', 'vmacro14547' => 'vma', 'vmacro15333' => 'vma', 'vmacro18743' => 'vma', 'vmacro20166' => 'vma', 'VMungo0331G0523' => 'vmu', 'VMungo0331G1202' => 'vmu', 'VMungo0720G1228' => 'vmu', 'VMungo0720G1514' => 'vmu', 'VMungo1080G0169' => 'vmu', 'VMungo1127G1475' => 'vmu', 'VMungo1383G1208' => 'vmu', 'VMungo1383G1698' => 'vmu', 'Zm00001eb012270' => 'zma', 'Zm00001eb054100' => 'zma', 'Zm00001eb063350' => 'zma', 'Zm00001eb328560' => 'zma', 'Zm00001eb342820' => 'zma', 'Zm00001eb362210' => 'zma', 'Zm00001eb397730' => 'zma', 'Zm00001eb399750' => 'zma' ), 'gf_id' => 'HOM05D000959', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000959' ), 'data_identifier' => 'HOM05D000959', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000959', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '622', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p07100' => 'bna', 'A03p11720' => 'bna', 'A05p08300' => 'bna', 'A05p13380' => 'bna', 'A09p54130' => 'bna', 'A10p16690' => 'bna', 'A10p16700' => 'bna', 'A10p33390' => 'bna', 'Aa31LG10G16020' => 'aar', 'Aa31LG1G11810' => 'aar', 'Aa31LG1G11830' => 'aar', 'Aa31LG1G22510' => 'aar', 'Aa31LG5G4890' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5793' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2310' => 'aag', 'Actinidia08499' => 'ach', 'Actinidia11262' => 'ach', 'Actinidia23926' => 'ach', 'Actinidia34420' => 'ach', 'Actinidia36970' => 'ach', 'Ah.02g111220' => 'amhyb', 'Ah.15g097750' => 'amhyb', 'AL4G27500' => 'aly', 'AL6G11470' => 'aly', 'AL8G35950' => 'aly', 'AL8G35960' => 'aly', 'AL8G35970' => 'aly', 'Aqoxy1G00912' => 'aox', 'Aqoxy2G02253' => 'aox', 'Aqoxy2G02411' => 'aox', 'Aqoxy5G00485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BZ66YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K8ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM4FUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6BF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HFV7XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25JBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0YNNV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MAKK6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P70IT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP2Z6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V61LZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YWP64R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3S9AI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7PGHH' => 'arhy', 'AT2G32150' => 'ath', 'AT3G62040' => 'ath', 'AT5G02230' => 'ath', 'AT5G59480' => 'ath', 'AT5G59490' => 'ath', 'ATR0332G060' => 'atr', 'ATR0559G190' => 'atr', 'ATR0693G294' => 'atr', 'Atru.chr3.3975' => 'acertr', 'Atru.chr3.3976' => 'acertr', 'Atru.chr3.3977' => 'acertr', 'Atru.chr4.2498' => 'acertr', 'Atru.chr5.838' => 'acertr', 'Atru.chr8.1990' => 'acertr', 'Atru.chr8.1991' => 'acertr', 'Atru.chr8.1992' => 'acertr', 'AUR62001759' => 'cqu', 'AUR62009545' => 'cqu', 'AUR62010474' => 'cqu', 'AUR62025820' => 'cqu', 'AUR62030422' => 'cqu', 'AUR62033605' => 'cqu', 'AUR62038615' => 'cqu', 'AUR62041347' => 'cqu', 'BcaB01g04574' => 'bca', 'BcaB02g09263' => 'bca', 'BcaB02g10453' => 'bca', 'BcaB05g22513' => 'bca', 'BcaB08g36253' => 'bca', 'BcaB08g36254' => 'bca', 'BcaC01g06519' => 'bca', 'BcaC02g11889' => 'bca', 'BcaC03g14010' => 'bca', 'BcaC03g18439' => 'bca', 'BcaC04g19765' => 'bca', 'BcaC09g48432' => 'bca', 'BcaNung07302' => 'bca', 'BolC2t06040H' => 'bol', 'BolC2t07346H' => 'bol', 'BolC3t13817H' => 'bol', 'BolC4t22625H' => 'bol', 'BolC4t23297H' => 'bol', 'BolC8t51278H' => 'bol', 'BolC9t58050H' => 'bol', 'BolC9t58051H' => 'bol', 'BolC9t60163H' => 'bol', 'BraA02t04712Z' => 'bra', 'BraA02t05791Z' => 'bra', 'BraA03t10483Z' => 'bra', 'BraA05t19795Z' => 'bra', 'BraA05t20276Z' => 'bra', 'BraA09t40827Z' => 'bra', 'BraA10t43750Z' => 'bra', 'BraA10t43751Z' => 'bra', 'BraA10t45370Z' => 'bra', 'C02p00400' => 'bna', 'C02p12460' => 'bna', 'C03p13680' => 'bna', 'C04p10270' => 'bna', 'C04p17500' => 'bna', 'C08p37010' => 'bna', 'C09p51880' => 'bna', 'C09p51890' => 'bna', 'C09p74300' => 'bna', 'CAN.G179.26' => 'can', 'CAN.G3384.1' => 'can', 'CAN.G394.68' => 'can', 'CAN.G907.13' => 'can', 'CANSAT11G0012' => 'cansat', 'CANSAT25G1586' => 'cansat', 'CANSAT35G0735' => 'cansat', 'CANSAT54G0556' => 'cansat', 'CANSAT64G0356' => 'cansat', 'CANSAT78G2042' => 'cansat', 'CARHR125920' => 'chi', 'CARHR131910' => 'chi', 'CARHR172390' => 'chi', 'CARHR211140' => 'chi', 'CARHR285850' => 'chi', 'CARHR285860' => 'chi', 'Carub.0004s1347' => 'cru', 'Carub.0004s1960' => 'cru', 'Carub.0005s2880' => 'cru', 'Carub.0006s0107' => 'cru', 'Carub.0008s2015' => 'cru', 'Carub.0008s2016' => 'cru', 'Carub.0008s2017' => 'cru', 'Ca_01315_v3' => 'car', 'Ca_05063_v3' => 'car', 'Ca_10231_v3' => 'car', 'Ca_10913_v3' => 'car', 'Ca_19156_v3' => 'car', 'Ca_23644_v3' => 'car', 'Ca_26735_v3' => 'car', 'Cc01_g13130' => 'ccan', 'Cc02_g21690' => 'ccan', 'Cc03_g03600' => 'ccan', 'Cc06_g02510' => 'ccan', 'CDE02G1265' => 'cde', 'CDE05G0415' => 'cde', 'CDE08G1082' => 'cde', 'Cfa005780' => 'cfa', 'Cfa011522' => 'cfa', 'Cfa011523' => 'cfa', 'Cfa015627' => 'cfa', 'Cfa017359' => 'cfa', 'Ciclev10005687m.g' => 'ccl', 'Ciclev10012173m.g' => 'ccl', 'Ciclev10021621m.g' => 'ccl', 'Ciclev10028968m.g' => 'ccl', 'Ciclev10029907m.g' => 'ccl', 'CiPaw.01G164800' => 'cil', 'CiPaw.07G083700' => 'cil', 'CiPaw.07G127000' => 'cil', 'CiPaw.07G136900' => 'cil', 'CiPaw.08G081700' => 'cil', 'CiPaw.09G194600' => 'cil', 'CiPaw.10G146500' => 'cil', 'CiPaw.13G091500' => 'cil', 'CiPaw.13G091600' => 'cil', 'ClCG00G003390' => 'cla', 'ClCG01G007220' => 'cla', 'ClCG03G001370' => 'cla', 'ClCG04G008100' => 'cla', 'ClCG06G006110' => 'cla', 'ClCG06G006130' => 'cla', 'ClCG10G021210' => 'cla', 'COL.COLO4_07648' => 'col', 'COL.COLO4_07650' => 'col', 'COL.COLO4_07651' => 'col', 'COL.COLO4_14780' => 'col', 'COL.COLO4_18546' => 'col', 'COL.COLO4_18547' => 'col', 'COL.COLO4_23103' => 'col', 'COL.COLO4_30419' => 'col', 'COL.COLO4_34232' => 'col', 'Cpa.g.sc169.20' => 'cpa', 'Cpa.g.sc57.45' => 'cpa', 'Cpa.g.sc58.124' => 'cpa', 'Cpa.g.sc58.125' => 'cpa', 'Cpa.g.sc81.118' => 'cpa', 'Cpa.g.sc81.119' => 'cpa', 'Cre12.g524700' => 'cre', 'CsaV3_1G034430' => 'csa', 'CsaV3_1G034440' => 'csa', 'CsaV3_1G034450' => 'csa', 'CsaV3_3G034830' => 'csa', 'CsaV3_4G025090' => 'csa', 'CsaV3_5G018660' => 'csa', 'CsaV3_6G038160' => 'csa', 'CSS0003447' => 'camsi', 'CSS0017840' => 'camsi', 'CSS0019260' => 'camsi', 'CSS0040375' => 'camsi', 'CSS0042533' => 'camsi', 'DCAR_005960' => 'dca', 'DCAR_012104' => 'dca', 'DCAR_012105' => 'dca', 'DCAR_012293' => 'dca', 'DCAR_015632' => 'dca', 'DCAR_024602' => 'dca', 'DCAR_028752' => 'dca', 'Dinv06261' => 'din', 'Dinv13982' => 'din', 'Dinv17029' => 'din', 'Dinv18463' => 'din', 'Dinv33181' => 'din', 'Dinv35585' => 'din', 'Dinv37161' => 'din', 'Dinv42977' => 'din', 'Dinv43122' => 'din', 'Dinv44517' => 'din', 'Duzib093G0256' => 'dzi', 'Duzib106G1254' => 'dzi', 'Duzib128G1789' => 'dzi', 'Duzib133G0633' => 'dzi', 'Duzib138G0510' => 'dzi', 'Duzib150G1084' => 'dzi', 'Duzib168G0488' => 'dzi', 'Duzib168G1523' => 'dzi', 'Duzib170G0133' => 'dzi', 'ECA234G1433' => 'eca', 'ECA236G1432' => 'eca', 'ECA236G2256' => 'eca', 'ECA236G2365' => 'eca', 'ECA236G4830' => 'eca', 'ECA248G1505' => 'eca', 'EL10Ac3g06431' => 'bvu', 'EL10Ac5g12577' => 'bvu', 'EL10Ac6g13533' => 'bvu', 'EL10Ac7g16045' => 'bvu', 'Eucgr.A01281' => 'egr', 'Eucgr.B02326' => 'egr', 'Eucgr.H03532' => 'egr', 'Eucgr.K00553' => 'egr', 'Eucgr.K03116' => 'egr', 'FAN02G3963' => 'fan', 'FAN05G0438' => 'fan', 'FAN09G2434' => 'fan', 'FAN12G3984' => 'fan', 'FAN14G0798' => 'fan', 'FAN17G0652' => 'fan', 'FAN19G1988' => 'fan', 'FAN22G0632' => 'fan', 'FAN23G0387' => 'fan', 'FAN26G1323' => 'fan', 'FAN28G0666' => 'fan', 'FvH4_1g26080' => 'fve', 'FvH4_3g36780' => 'fve', 'FvH4_4g15270' => 'fve', 'FvH4_6g13490' => 'fve', 'Glyma.01G098700' => 'gma', 'Glyma.03G065900' => 'gma', 'Glyma.03G073754' => 'gma', 'Glyma.03G073758' => 'gma', 'Glyma.03G083200' => 'gma', 'Glyma.03G225500' => 'gma', 'Glyma.05G037766' => 'gma', 'Glyma.07G133500' => 'gma', 'Glyma.10G139400' => 'gma', 'Glyma.10G248900' => 'gma', 'Glyma.11G137800' => 'gma', 'Glyma.12G061300' => 'gma', 'Glyma.13G337900' => 'gma', 'Glyma.15G036600' => 'gma', 'Glyma.18G182800' => 'gma', 'Glyma.19G222500' => 'gma', 'Glyma.20G144800' => 'gma', 'Gohir.A01G222000' => 'ghi', 'Gohir.A03G044000' => 'ghi', 'Gohir.A03G044100' => 'ghi', 'Gohir.A04G083100' => 'ghi', 'Gohir.A07G127200' => 'ghi', 'Gohir.A07G132400' => 'ghi', 'Gohir.A08G000700' => 'ghi', 'Gohir.A11G327300' => 'ghi', 'Gohir.D01G211500' => 'ghi', 'Gohir.D03G123400' => 'ghi', 'Gohir.D03G123500' => 'ghi', 'Gohir.D04G121800' => 'ghi', 'Gohir.D07G131500' => 'ghi', 'Gohir.D07G136600' => 'ghi', 'Gohir.D08G011600' => 'ghi', 'Gohir.D11G346200' => 'ghi', 'Gorai.001G142800' => 'gra', 'Gorai.001G148700' => 'gra', 'Gorai.002G257300' => 'gra', 'Gorai.003G130000' => 'gra', 'Gorai.003G130100' => 'gra', 'Gorai.004G005300' => 'gra', 'Gorai.007G376500' => 'gra', 'Gorai.012G104700' => 'gra', 'GSVIVG01017946001' => 'vvi', 'GSVIVG01024928001' => 'vvi', 'GSVIVG01028227001' => 'vvi', 'GSVIVG01034151001' => 'vvi', 'HanXRQChr05g0135031' => 'han', 'HanXRQChr05g0135041' => 'han', 'HanXRQChr05g0140021' => 'han', 'HanXRQChr06g0178981' => 'han', 'HanXRQChr07g0188251' => 'han', 'HanXRQChr08g0235311' => 'han', 'HanXRQChr09g0271011' => 'han', 'HanXRQChr10g0293321' => 'han', 'HanXRQChr13g0388171' => 'han', 'Haze_00916' => 'cav', 'Haze_05063' => 'cav', 'Haze_20814' => 'cav', 'Haze_24128' => 'cav', 'Hma1.2p1_0745F.1_g212010' => 'hma', 'Hma1.2p1_0757F.1_g213260' => 'hma', 'Hma1.2p1_0936F.1_g238840' => 'hma', 'Hma1.2p1_1735F.1_g299890' => 'hma', 'Hma1.2p1_1861F.1_g305685' => 'hma', 'HPP92_003397' => 'vpl', 'HPP92_012597' => 'vpl', 'HPP92_015520' => 'vpl', 'HPP92_015539' => 'vpl', 'HPP92_020373' => 'vpl', 'Hund04938' => 'sun', 'Hund10677' => 'sun', 'Hund11033' => 'sun', 'Hund12155' => 'sun', 'Lalb_Chr01g0022551' => 'lal', 'Lalb_Chr03g0042341' => 'lal', 'Lalb_Chr07g0192931' => 'lal', 'Lalb_Chr12g0209551' => 'lal', 'Lalb_Chr19g0125251' => 'lal', 'Lalb_Chr19g0137891' => 'lal', 'Lalb_Chr21g0304641' => 'lal', 'Lalb_Chr21g0309881' => 'lal', 'Lj1A5T12' => 'lonja', 'Lj1C148G10' => 'lonja', 'Lj2A93T83' => 'lonja', 'Lj3A738G68' => 'lonja', 'Lj3C966T1' => 'lonja', 'Lj3g0018958' => 'lja', 'Lj3g0021831' => 'lja', 'Lj3g0025443' => 'lja', 'Lj4g0026809' => 'lja', 'Lj5g0012558' => 'lja', 'Lj5g0021586' => 'lja', 'Lsat_1_v5_gn_5_156840' => 'lsa', 'Lsat_1_v5_gn_8_73460' => 'lsa', 'Lsat_1_v5_gn_8_73481' => 'lsa', 'Lsat_1_v5_gn_9_31601' => 'lsa', 'Lsat_1_v5_gn_9_77320' => 'lsa', 'Manes.01G171300' => 'mes', 'Manes.01G171400' => 'mes', 'Manes.01G236100' => 'mes', 'Manes.02G130500' => 'mes', 'Manes.02G130600' => 'mes', 'Manes.03G180200' => 'mes', 'Manes.05G007000' => 'mes', 'Manes.08G084400' => 'mes', 'Manes.09G092600' => 'mes', 'Manes.15G027900' => 'mes', 'MBI04_g40948_MAGBIO' => 'mbi', 'MBI14_g12123_MAGBIO' => 'mbi', 'MBI18_g28915_MAGBIO' => 'mbi', 'MCO09G053' => 'mco', 'MCO11G782' => 'mco', 'MCO15G215' => 'mco', 'MD03G1088500' => 'mdo', 'MD03G1088600' => 'mdo', 'MD04G1130800' => 'mdo', 'MD09G1291700' => 'mdo', 'MD11G1097500' => 'mdo', 'MD11G1097600' => 'mdo', 'MD12G1143900' => 'mdo', 'MD13G1191400' => 'mdo', 'MD16G1191500' => 'mdo', 'Medtr1g085570' => 'mtr', 'Medtr1g104610' => 'mtr', 'Medtr2g097520' => 'mtr', 'Medtr4g021800' => 'mtr', 'Medtr4g021825' => 'mtr', 'Medtr4g064270' => 'mtr', 'Medtr4g064380' => 'mtr', 'Medtr7g062150' => 'mtr', 'MELO3C003138.2' => 'cme', 'MELO3C005187.2' => 'cme', 'MELO3C009252.2' => 'cme', 'MELO3C014481.2' => 'cme', 'MELO3C020616.2' => 'cme', 'MELO3C020617.2' => 'cme', 'MELO3C020618.2' => 'cme', 'Migut.G00328' => 'egut', 'Migut.J00320' => 'egut', 'Migut.L01000' => 'egut', 'Migut.L01953' => 'egut', 'MSTRG.10253' => 'ama', 'MSTRG.19077' => 'ama', 'MSTRG.26780' => 'ama', 'MSTRG.4023' => 'ama', 'MSTRG.5655' => 'ama', 'MSTRG.9992' => 'ama', 'Nitab4.5_0000043g0310' => 'nta', 'Nitab4.5_0000463g0080' => 'nta', 'Nitab4.5_0000705g0170' => 'nta', 'Nitab4.5_0001326g0060' => 'nta', 'Nitab4.5_0001628g0030' => 'nta', 'Nitab4.5_0002103g0110' => 'nta', 'Nitab4.5_0002946g0030' => 'nta', 'Nitab4.5_0004639g0030' => 'nta', 'Nn2g11149' => 'nnu', 'Nn2g13389' => 'nnu', 'Nn4g25326' => 'nnu', 'Nn4g26290' => 'nnu', 'Nn5g29865' => 'nnu', 'Oeu004163.1' => 'oeu', 'Oeu006901.1' => 'oeu', 'Oeu010096.1' => 'oeu', 'Oeu024340.1' => 'oeu', 'Oeu048369.1' => 'oeu', 'Os01g0973000' => 'osa', 'Os03g0273800' => 'osa', 'Os03g0701200' => 'osa', 'Os03g0834050' => 'osa', 'Os07g0634400' => 'osa', 'Peaxi162Scf00092g01414' => 'pax', 'Peaxi162Scf00165g00818' => 'pax', 'Peaxi162Scf00309g00516' => 'pax', 'Peaxi162Scf00774g00218' => 'pax', 'PGR004G1824' => 'pgr', 'PGR004G2606' => 'pgr', 'PGR031G2716' => 'pgr', 'PGR102G2460' => 'pgr', 'PGR142G2599' => 'pgr', 'PGSC0003DMG400000843' => 'stu', 'PGSC0003DMG400008829' => 'stu', 'PGSC0003DMG400030418' => 'stu', 'PGSC0003DMG400031834' => 'stu', 'PGSC0003DMG401028300' => 'stu', 'PGSC0003DMG402028300' => 'stu', 'Phvul.001G219300' => 'pvu', 'Phvul.007G056000' => 'pvu', 'Phvul.007G208000' => 'pvu', 'Phvul.008G119500' => 'pvu', 'Phvul.010G011200' => 'pvu', 'Phvul.010G014800' => 'pvu', 'Phvul.011G062900' => 'pvu', 'Phvul.L007043' => 'pvu', 'Potri.001G242300' => 'ptr', 'Potri.002G185300' => 'ptr', 'Potri.006G086900' => 'ptr', 'Potri.008G151700' => 'ptr', 'Potri.009G033500' => 'ptr', 'Potri.010G089300' => 'ptr', 'Potri.014G110800' => 'ptr', 'Pp3c27_8130' => 'ppa', 'Pp3c6_27410' => 'ppa', 'PRCOL_00001659' => 'pco', 'PRCOL_00001927' => 'pco', 'PRCOL_00003649' => 'pco', 'Prupe.1G011600' => 'ppe', 'Prupe.3G000800' => 'ppe', 'Prupe.3G001100' => 'ppe', 'Prupe.6G072700' => 'ppe', 'Prupe.6G072800' => 'ppe', 'Prupe.6G257300' => 'ppe', 'Prupe.8G033000' => 'ppe', 'Psat0s2633g0080' => 'psa', 'Psat0s3396g0080' => 'psa', 'Psat0s3396g0200' => 'psa', 'Psat3g139080' => 'psa', 'Psat5g285080' => 'psa', 'Psat6g157760' => 'psa', 'Psat6g208440' => 'psa', 'Psat7g215320' => 'psa', 'Psat7g215400' => 'psa', 'Psat7g235600' => 'psa', 'Psat7g235760' => 'psa', 'PSO063G4603' => 'pso', 'PSO210G0182' => 'pso', 'PSO210G0196' => 'pso', 'PSO339G0394' => 'pso', 'PSO339G4127' => 'pso', 'PSO513G0064' => 'pso', 'PSO761G0079' => 'pso', 'QL01p031003' => 'qlo', 'QL01p031078' => 'qlo', 'QL06p003004' => 'qlo', 'QL07p048731' => 'qlo', 'QL09p037427' => 'qlo', 'RcHm_v2.0_Chr3g0466361' => 'rch', 'RcHm_v2.0_Chr3g0485571' => 'rch', 'RcHm_v2.0_Chr4g0416551' => 'rch', 'RcHm_v2.0_Chr5g0065831' => 'rch', 'Rhsim01G0230500' => 'rsi', 'Rhsim05G0194000' => 'rsi', 'Rhsim08G0250400' => 'rsi', 'Sabra02G0131000' => 'sbr', 'Sabra06G0066300' => 'sbr', 'Sabra08G0115500' => 'sbr', 'Sabra09G0023900' => 'sbr', 'Sabra10G0054000' => 'sbr', 'Sabra14G0081500' => 'sbr', 'Sabra16G0147100' => 'sbr', 'SalBow2G2957' => 'sbo', 'SalBow4G3320' => 'sbo', 'SalBow8G1894' => 'sbo', 'Sc07g0007950' => 'sci', 'Sc12g0001360' => 'sci', 'Sc13g0004330' => 'sci', 'Sc20g0005010' => 'sci', 'Sed0000361' => 'sed', 'Sed0001706' => 'sed', 'Sed0002422' => 'sed', 'Sed0004029' => 'sed', 'Sed0004602' => 'sed', 'Sed0004943' => 'sed', 'Sed0008646' => 'sed', 'Sed0023313' => 'sed', 'Sed0024843' => 'sed', 'SEGI_00081' => 'sgi', 'SEGI_00947' => 'sgi', 'SEGI_04046' => 'sgi', 'SEGI_06880' => 'sgi', 'SEGI_09736' => 'sgi', 'SEGI_12741' => 'sgi', 'SEGI_14530' => 'sgi', 'SEGI_20705' => 'sgi', 'SEGI_26088' => 'sgi', 'SEGI_28323' => 'sgi', 'SEGI_33343' => 'sgi', 'SGA_v2.0_scaffold126G33775' => 'sas', 'SGA_v2.0_scaffold2G01337' => 'sas', 'SGA_v2.0_scaffold38G15006' => 'sas', 'SGA_v2.0_scaffold39G15264' => 'sas', 'SGA_v2.0_scaffold453G51880' => 'sas', 'SHI12696' => 'shi', 'SMO367G1096' => 'smo', 'Solyc01g068630.3' => 'sly', 'Solyc05g011880.3' => 'sly', 'Solyc06g076300.3' => 'sly', 'Solyc09g010940.4' => 'sly', 'Solyc09g075890.3' => 'sly', 'Sopen01g030560' => 'spe', 'Sopen05g006630' => 'spe', 'Sopen06g032720' => 'spe', 'Sopen09g005660' => 'spe', 'Sopen09g030690' => 'spe', 'Sp4g14540' => 'spa', 'Sp4g20030' => 'spa', 'Sp5g01320' => 'spa', 'Sp6g21170' => 'spa', 'Sp6g21180' => 'spa', 'Sp6g21190' => 'spa', 'Sp6g40220' => 'spa', 'TAR362G0122' => 'tar', 'TAR362G1338' => 'tar', 'TAR369G0590' => 'tar', 'TAR371G0824' => 'tar', 'TAR622G1429' => 'tar', 'TAR623G0734' => 'tar', 'TAR625G0441' => 'tar', 'TAR629G0976' => 'tar', 'TAR633G1195' => 'tar', 'TAR636G2660' => 'tar', 'THA.LOC104799440' => 'tha', 'THA.LOC104800966' => 'tha', 'THA.LOC104806559' => 'tha', 'THA.LOC104810765' => 'tha', 'THA.LOC104816266' => 'tha', 'THA.LOC104817419' => 'tha', 'THA.LOC104827021' => 'tha', 'Thecc.01G327400' => 'tca', 'Thecc.04G229200' => 'tca', 'Thecc.05G037400' => 'tca', 'Thecc.09G318600' => 'tca', 'Thecc.09G318700' => 'tca', 'Thhalv10006238m.g' => 'esa', 'Thhalv10014321m.g' => 'esa', 'Thhalv10014335m.g' => 'esa', 'Thhalv10015826m.g' => 'esa', 'Thhalv10017107m.g' => 'esa', 'Thhalv10017180m.g' => 'esa', 'Thhalv10029339m.g' => 'esa', 'TPR.G1699' => 'tpr', 'TPR.G23609' => 'tpr', 'TPR.G3081' => 'tpr', 'TPR.G40397' => 'tpr', 'TPR.G5522' => 'tpr', 'TPR.G5618' => 'tpr', 'TPR.G5626' => 'tpr', 'TWI09G1632' => 'twi', 'TWI23G1230' => 'twi', 'TWI53G1064' => 'twi', 'TWI59G0751' => 'twi', 'TWI74G0947' => 'twi', 'TWI77G0337' => 'twi', 'TWI79G1254' => 'twi', 'unitig_0.g2341' => 'ugi', 'unitig_26.g10006' => 'ugi', 'unitig_26.g10008' => 'ugi', 'unitig_26.g9192' => 'ugi', 'vmacro14547' => 'vma', 'vmacro15333' => 'vma', 'vmacro18743' => 'vma', 'vmacro20166' => 'vma', 'VMungo0331G0523' => 'vmu', 'VMungo0331G1202' => 'vmu', 'VMungo0720G1228' => 'vmu', 'VMungo0720G1514' => 'vmu', 'VMungo1080G0169' => 'vmu', 'VMungo1127G1475' => 'vmu', 'VMungo1383G1208' => 'vmu', 'VMungo1383G1698' => 'vmu', 'Zm00001eb012270' => 'zma', 'Zm00001eb054100' => 'zma', 'Zm00001eb063350' => 'zma', 'Zm00001eb328560' => 'zma', 'Zm00001eb342820' => 'zma', 'Zm00001eb362210' => 'zma', 'Zm00001eb397730' => 'zma', 'Zm00001eb399750' => 'zma' ) $gf_id = 'HOM05D000959' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000959' ) $data_identifier = 'HOM05D000959' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 5, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 5, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 10, 'mbi' => (int) 3, 'mco' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 2, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 3, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 11, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399750' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000959', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '622', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p07100' => 'bna', 'A03p11720' => 'bna', 'A05p08300' => 'bna', 'A05p13380' => 'bna', 'A09p54130' => 'bna', 'A10p16690' => 'bna', 'A10p16700' => 'bna', 'A10p33390' => 'bna', 'Aa31LG10G16020' => 'aar', 'Aa31LG1G11810' => 'aar', 'Aa31LG1G11830' => 'aar', 'Aa31LG1G22510' => 'aar', 'Aa31LG5G4890' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5793' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2310' => 'aag', 'Actinidia08499' => 'ach', 'Actinidia11262' => 'ach', 'Actinidia23926' => 'ach', 'Actinidia34420' => 'ach', 'Actinidia36970' => 'ach', 'Ah.02g111220' => 'amhyb', 'Ah.15g097750' => 'amhyb', 'AL4G27500' => 'aly', 'AL6G11470' => 'aly', 'AL8G35950' => 'aly', 'AL8G35960' => 'aly', 'AL8G35970' => 'aly', 'Aqoxy1G00912' => 'aox', 'Aqoxy2G02253' => 'aox', 'Aqoxy2G02411' => 'aox', 'Aqoxy5G00485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BZ66YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K8ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM4FUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6BF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HFV7XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25JBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0YNNV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MAKK6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P70IT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP2Z6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V61LZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YWP64R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3S9AI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7PGHH' => 'arhy', 'AT2G32150' => 'ath', 'AT3G62040' => 'ath', 'AT5G02230' => 'ath', 'AT5G59480' => 'ath', 'AT5G59490' => 'ath', 'ATR0332G060' => 'atr', 'ATR0559G190' => 'atr', 'ATR0693G294' => 'atr', 'Atru.chr3.3975' => 'acertr', 'Atru.chr3.3976' => 'acertr', 'Atru.chr3.3977' => 'acertr', 'Atru.chr4.2498' => 'acertr', 'Atru.chr5.838' => 'acertr', 'Atru.chr8.1990' => 'acertr', 'Atru.chr8.1991' => 'acertr', 'Atru.chr8.1992' => 'acertr', 'AUR62001759' => 'cqu', 'AUR62009545' => 'cqu', 'AUR62010474' => 'cqu', 'AUR62025820' => 'cqu', 'AUR62030422' => 'cqu', 'AUR62033605' => 'cqu', 'AUR62038615' => 'cqu', 'AUR62041347' => 'cqu', 'BcaB01g04574' => 'bca', 'BcaB02g09263' => 'bca', 'BcaB02g10453' => 'bca', 'BcaB05g22513' => 'bca', 'BcaB08g36253' => 'bca', 'BcaB08g36254' => 'bca', 'BcaC01g06519' => 'bca', 'BcaC02g11889' => 'bca', 'BcaC03g14010' => 'bca', 'BcaC03g18439' => 'bca', 'BcaC04g19765' => 'bca', 'BcaC09g48432' => 'bca', 'BcaNung07302' => 'bca', 'BolC2t06040H' => 'bol', 'BolC2t07346H' => 'bol', 'BolC3t13817H' => 'bol', 'BolC4t22625H' => 'bol', 'BolC4t23297H' => 'bol', 'BolC8t51278H' => 'bol', 'BolC9t58050H' => 'bol', 'BolC9t58051H' => 'bol', 'BolC9t60163H' => 'bol', 'BraA02t04712Z' => 'bra', 'BraA02t05791Z' => 'bra', 'BraA03t10483Z' => 'bra', 'BraA05t19795Z' => 'bra', 'BraA05t20276Z' => 'bra', 'BraA09t40827Z' => 'bra', 'BraA10t43750Z' => 'bra', 'BraA10t43751Z' => 'bra', 'BraA10t45370Z' => 'bra', 'C02p00400' => 'bna', 'C02p12460' => 'bna', 'C03p13680' => 'bna', 'C04p10270' => 'bna', 'C04p17500' => 'bna', 'C08p37010' => 'bna', 'C09p51880' => 'bna', 'C09p51890' => 'bna', 'C09p74300' => 'bna', 'CAN.G179.26' => 'can', 'CAN.G3384.1' => 'can', 'CAN.G394.68' => 'can', 'CAN.G907.13' => 'can', 'CANSAT11G0012' => 'cansat', 'CANSAT25G1586' => 'cansat', 'CANSAT35G0735' => 'cansat', 'CANSAT54G0556' => 'cansat', 'CANSAT64G0356' => 'cansat', 'CANSAT78G2042' => 'cansat', 'CARHR125920' => 'chi', 'CARHR131910' => 'chi', 'CARHR172390' => 'chi', 'CARHR211140' => 'chi', 'CARHR285850' => 'chi', 'CARHR285860' => 'chi', 'Carub.0004s1347' => 'cru', 'Carub.0004s1960' => 'cru', 'Carub.0005s2880' => 'cru', 'Carub.0006s0107' => 'cru', 'Carub.0008s2015' => 'cru', 'Carub.0008s2016' => 'cru', 'Carub.0008s2017' => 'cru', 'Ca_01315_v3' => 'car', 'Ca_05063_v3' => 'car', 'Ca_10231_v3' => 'car', 'Ca_10913_v3' => 'car', 'Ca_19156_v3' => 'car', 'Ca_23644_v3' => 'car', 'Ca_26735_v3' => 'car', 'Cc01_g13130' => 'ccan', 'Cc02_g21690' => 'ccan', 'Cc03_g03600' => 'ccan', 'Cc06_g02510' => 'ccan', 'CDE02G1265' => 'cde', 'CDE05G0415' => 'cde', 'CDE08G1082' => 'cde', 'Cfa005780' => 'cfa', 'Cfa011522' => 'cfa', 'Cfa011523' => 'cfa', 'Cfa015627' => 'cfa', 'Cfa017359' => 'cfa', 'Ciclev10005687m.g' => 'ccl', 'Ciclev10012173m.g' => 'ccl', 'Ciclev10021621m.g' => 'ccl', 'Ciclev10028968m.g' => 'ccl', 'Ciclev10029907m.g' => 'ccl', 'CiPaw.01G164800' => 'cil', 'CiPaw.07G083700' => 'cil', 'CiPaw.07G127000' => 'cil', 'CiPaw.07G136900' => 'cil', 'CiPaw.08G081700' => 'cil', 'CiPaw.09G194600' => 'cil', 'CiPaw.10G146500' => 'cil', 'CiPaw.13G091500' => 'cil', 'CiPaw.13G091600' => 'cil', 'ClCG00G003390' => 'cla', 'ClCG01G007220' => 'cla', 'ClCG03G001370' => 'cla', 'ClCG04G008100' => 'cla', 'ClCG06G006110' => 'cla', 'ClCG06G006130' => 'cla', 'ClCG10G021210' => 'cla', 'COL.COLO4_07648' => 'col', 'COL.COLO4_07650' => 'col', 'COL.COLO4_07651' => 'col', 'COL.COLO4_14780' => 'col', 'COL.COLO4_18546' => 'col', 'COL.COLO4_18547' => 'col', 'COL.COLO4_23103' => 'col', 'COL.COLO4_30419' => 'col', 'COL.COLO4_34232' => 'col', 'Cpa.g.sc169.20' => 'cpa', 'Cpa.g.sc57.45' => 'cpa', 'Cpa.g.sc58.124' => 'cpa', 'Cpa.g.sc58.125' => 'cpa', 'Cpa.g.sc81.118' => 'cpa', 'Cpa.g.sc81.119' => 'cpa', 'Cre12.g524700' => 'cre', 'CsaV3_1G034430' => 'csa', 'CsaV3_1G034440' => 'csa', 'CsaV3_1G034450' => 'csa', 'CsaV3_3G034830' => 'csa', 'CsaV3_4G025090' => 'csa', 'CsaV3_5G018660' => 'csa', 'CsaV3_6G038160' => 'csa', 'CSS0003447' => 'camsi', 'CSS0017840' => 'camsi', 'CSS0019260' => 'camsi', 'CSS0040375' => 'camsi', 'CSS0042533' => 'camsi', 'DCAR_005960' => 'dca', 'DCAR_012104' => 'dca', 'DCAR_012105' => 'dca', 'DCAR_012293' => 'dca', 'DCAR_015632' => 'dca', 'DCAR_024602' => 'dca', 'DCAR_028752' => 'dca', 'Dinv06261' => 'din', 'Dinv13982' => 'din', 'Dinv17029' => 'din', 'Dinv18463' => 'din', 'Dinv33181' => 'din', 'Dinv35585' => 'din', 'Dinv37161' => 'din', 'Dinv42977' => 'din', 'Dinv43122' => 'din', 'Dinv44517' => 'din', 'Duzib093G0256' => 'dzi', 'Duzib106G1254' => 'dzi', 'Duzib128G1789' => 'dzi', 'Duzib133G0633' => 'dzi', 'Duzib138G0510' => 'dzi', 'Duzib150G1084' => 'dzi', 'Duzib168G0488' => 'dzi', 'Duzib168G1523' => 'dzi', 'Duzib170G0133' => 'dzi', 'ECA234G1433' => 'eca', 'ECA236G1432' => 'eca', 'ECA236G2256' => 'eca', 'ECA236G2365' => 'eca', 'ECA236G4830' => 'eca', 'ECA248G1505' => 'eca', 'EL10Ac3g06431' => 'bvu', 'EL10Ac5g12577' => 'bvu', 'EL10Ac6g13533' => 'bvu', 'EL10Ac7g16045' => 'bvu', 'Eucgr.A01281' => 'egr', 'Eucgr.B02326' => 'egr', 'Eucgr.H03532' => 'egr', 'Eucgr.K00553' => 'egr', 'Eucgr.K03116' => 'egr', 'FAN02G3963' => 'fan', 'FAN05G0438' => 'fan', 'FAN09G2434' => 'fan', 'FAN12G3984' => 'fan', 'FAN14G0798' => 'fan', 'FAN17G0652' => 'fan', 'FAN19G1988' => 'fan', 'FAN22G0632' => 'fan', 'FAN23G0387' => 'fan', 'FAN26G1323' => 'fan', 'FAN28G0666' => 'fan', 'FvH4_1g26080' => 'fve', 'FvH4_3g36780' => 'fve', 'FvH4_4g15270' => 'fve', 'FvH4_6g13490' => 'fve', 'Glyma.01G098700' => 'gma', 'Glyma.03G065900' => 'gma', 'Glyma.03G073754' => 'gma', 'Glyma.03G073758' => 'gma', 'Glyma.03G083200' => 'gma', 'Glyma.03G225500' => 'gma', 'Glyma.05G037766' => 'gma', 'Glyma.07G133500' => 'gma', 'Glyma.10G139400' => 'gma', 'Glyma.10G248900' => 'gma', 'Glyma.11G137800' => 'gma', 'Glyma.12G061300' => 'gma', 'Glyma.13G337900' => 'gma', 'Glyma.15G036600' => 'gma', 'Glyma.18G182800' => 'gma', 'Glyma.19G222500' => 'gma', 'Glyma.20G144800' => 'gma', 'Gohir.A01G222000' => 'ghi', 'Gohir.A03G044000' => 'ghi', 'Gohir.A03G044100' => 'ghi', 'Gohir.A04G083100' => 'ghi', 'Gohir.A07G127200' => 'ghi', 'Gohir.A07G132400' => 'ghi', 'Gohir.A08G000700' => 'ghi', 'Gohir.A11G327300' => 'ghi', 'Gohir.D01G211500' => 'ghi', 'Gohir.D03G123400' => 'ghi', 'Gohir.D03G123500' => 'ghi', 'Gohir.D04G121800' => 'ghi', 'Gohir.D07G131500' => 'ghi', 'Gohir.D07G136600' => 'ghi', 'Gohir.D08G011600' => 'ghi', 'Gohir.D11G346200' => 'ghi', 'Gorai.001G142800' => 'gra', 'Gorai.001G148700' => 'gra', 'Gorai.002G257300' => 'gra', 'Gorai.003G130000' => 'gra', 'Gorai.003G130100' => 'gra', 'Gorai.004G005300' => 'gra', 'Gorai.007G376500' => 'gra', 'Gorai.012G104700' => 'gra', 'GSVIVG01017946001' => 'vvi', 'GSVIVG01024928001' => 'vvi', 'GSVIVG01028227001' => 'vvi', 'GSVIVG01034151001' => 'vvi', 'HanXRQChr05g0135031' => 'han', 'HanXRQChr05g0135041' => 'han', 'HanXRQChr05g0140021' => 'han', 'HanXRQChr06g0178981' => 'han', 'HanXRQChr07g0188251' => 'han', 'HanXRQChr08g0235311' => 'han', 'HanXRQChr09g0271011' => 'han', 'HanXRQChr10g0293321' => 'han', 'HanXRQChr13g0388171' => 'han', 'Haze_00916' => 'cav', 'Haze_05063' => 'cav', 'Haze_20814' => 'cav', 'Haze_24128' => 'cav', 'Hma1.2p1_0745F.1_g212010' => 'hma', 'Hma1.2p1_0757F.1_g213260' => 'hma', 'Hma1.2p1_0936F.1_g238840' => 'hma', 'Hma1.2p1_1735F.1_g299890' => 'hma', 'Hma1.2p1_1861F.1_g305685' => 'hma', 'HPP92_003397' => 'vpl', 'HPP92_012597' => 'vpl', 'HPP92_015520' => 'vpl', 'HPP92_015539' => 'vpl', 'HPP92_020373' => 'vpl', 'Hund04938' => 'sun', 'Hund10677' => 'sun', 'Hund11033' => 'sun', 'Hund12155' => 'sun', 'Lalb_Chr01g0022551' => 'lal', 'Lalb_Chr03g0042341' => 'lal', 'Lalb_Chr07g0192931' => 'lal', 'Lalb_Chr12g0209551' => 'lal', 'Lalb_Chr19g0125251' => 'lal', 'Lalb_Chr19g0137891' => 'lal', 'Lalb_Chr21g0304641' => 'lal', 'Lalb_Chr21g0309881' => 'lal', 'Lj1A5T12' => 'lonja', 'Lj1C148G10' => 'lonja', 'Lj2A93T83' => 'lonja', 'Lj3A738G68' => 'lonja', 'Lj3C966T1' => 'lonja', 'Lj3g0018958' => 'lja', 'Lj3g0021831' => 'lja', 'Lj3g0025443' => 'lja', 'Lj4g0026809' => 'lja', 'Lj5g0012558' => 'lja', 'Lj5g0021586' => 'lja', 'Lsat_1_v5_gn_5_156840' => 'lsa', 'Lsat_1_v5_gn_8_73460' => 'lsa', 'Lsat_1_v5_gn_8_73481' => 'lsa', 'Lsat_1_v5_gn_9_31601' => 'lsa', 'Lsat_1_v5_gn_9_77320' => 'lsa', 'Manes.01G171300' => 'mes', 'Manes.01G171400' => 'mes', 'Manes.01G236100' => 'mes', 'Manes.02G130500' => 'mes', 'Manes.02G130600' => 'mes', 'Manes.03G180200' => 'mes', 'Manes.05G007000' => 'mes', 'Manes.08G084400' => 'mes', 'Manes.09G092600' => 'mes', 'Manes.15G027900' => 'mes', 'MBI04_g40948_MAGBIO' => 'mbi', 'MBI14_g12123_MAGBIO' => 'mbi', 'MBI18_g28915_MAGBIO' => 'mbi', 'MCO09G053' => 'mco', 'MCO11G782' => 'mco', 'MCO15G215' => 'mco', 'MD03G1088500' => 'mdo', 'MD03G1088600' => 'mdo', 'MD04G1130800' => 'mdo', 'MD09G1291700' => 'mdo', 'MD11G1097500' => 'mdo', 'MD11G1097600' => 'mdo', 'MD12G1143900' => 'mdo', 'MD13G1191400' => 'mdo', 'MD16G1191500' => 'mdo', 'Medtr1g085570' => 'mtr', 'Medtr1g104610' => 'mtr', 'Medtr2g097520' => 'mtr', 'Medtr4g021800' => 'mtr', 'Medtr4g021825' => 'mtr', 'Medtr4g064270' => 'mtr', 'Medtr4g064380' => 'mtr', 'Medtr7g062150' => 'mtr', 'MELO3C003138.2' => 'cme', 'MELO3C005187.2' => 'cme', 'MELO3C009252.2' => 'cme', 'MELO3C014481.2' => 'cme', 'MELO3C020616.2' => 'cme', 'MELO3C020617.2' => 'cme', 'MELO3C020618.2' => 'cme', 'Migut.G00328' => 'egut', 'Migut.J00320' => 'egut', 'Migut.L01000' => 'egut', 'Migut.L01953' => 'egut', 'MSTRG.10253' => 'ama', 'MSTRG.19077' => 'ama', 'MSTRG.26780' => 'ama', 'MSTRG.4023' => 'ama', 'MSTRG.5655' => 'ama', 'MSTRG.9992' => 'ama', 'Nitab4.5_0000043g0310' => 'nta', 'Nitab4.5_0000463g0080' => 'nta', 'Nitab4.5_0000705g0170' => 'nta', 'Nitab4.5_0001326g0060' => 'nta', 'Nitab4.5_0001628g0030' => 'nta', 'Nitab4.5_0002103g0110' => 'nta', 'Nitab4.5_0002946g0030' => 'nta', 'Nitab4.5_0004639g0030' => 'nta', 'Nn2g11149' => 'nnu', 'Nn2g13389' => 'nnu', 'Nn4g25326' => 'nnu', 'Nn4g26290' => 'nnu', 'Nn5g29865' => 'nnu', 'Oeu004163.1' => 'oeu', 'Oeu006901.1' => 'oeu', 'Oeu010096.1' => 'oeu', 'Oeu024340.1' => 'oeu', 'Oeu048369.1' => 'oeu', 'Os01g0973000' => 'osa', 'Os03g0273800' => 'osa', 'Os03g0701200' => 'osa', 'Os03g0834050' => 'osa', 'Os07g0634400' => 'osa', 'Peaxi162Scf00092g01414' => 'pax', 'Peaxi162Scf00165g00818' => 'pax', 'Peaxi162Scf00309g00516' => 'pax', 'Peaxi162Scf00774g00218' => 'pax', 'PGR004G1824' => 'pgr', 'PGR004G2606' => 'pgr', 'PGR031G2716' => 'pgr', 'PGR102G2460' => 'pgr', 'PGR142G2599' => 'pgr', 'PGSC0003DMG400000843' => 'stu', 'PGSC0003DMG400008829' => 'stu', 'PGSC0003DMG400030418' => 'stu', 'PGSC0003DMG400031834' => 'stu', 'PGSC0003DMG401028300' => 'stu', 'PGSC0003DMG402028300' => 'stu', 'Phvul.001G219300' => 'pvu', 'Phvul.007G056000' => 'pvu', 'Phvul.007G208000' => 'pvu', 'Phvul.008G119500' => 'pvu', 'Phvul.010G011200' => 'pvu', 'Phvul.010G014800' => 'pvu', 'Phvul.011G062900' => 'pvu', 'Phvul.L007043' => 'pvu', 'Potri.001G242300' => 'ptr', 'Potri.002G185300' => 'ptr', 'Potri.006G086900' => 'ptr', 'Potri.008G151700' => 'ptr', 'Potri.009G033500' => 'ptr', 'Potri.010G089300' => 'ptr', 'Potri.014G110800' => 'ptr', 'Pp3c27_8130' => 'ppa', 'Pp3c6_27410' => 'ppa', 'PRCOL_00001659' => 'pco', 'PRCOL_00001927' => 'pco', 'PRCOL_00003649' => 'pco', 'Prupe.1G011600' => 'ppe', 'Prupe.3G000800' => 'ppe', 'Prupe.3G001100' => 'ppe', 'Prupe.6G072700' => 'ppe', 'Prupe.6G072800' => 'ppe', 'Prupe.6G257300' => 'ppe', 'Prupe.8G033000' => 'ppe', 'Psat0s2633g0080' => 'psa', 'Psat0s3396g0080' => 'psa', 'Psat0s3396g0200' => 'psa', 'Psat3g139080' => 'psa', 'Psat5g285080' => 'psa', 'Psat6g157760' => 'psa', 'Psat6g208440' => 'psa', 'Psat7g215320' => 'psa', 'Psat7g215400' => 'psa', 'Psat7g235600' => 'psa', 'Psat7g235760' => 'psa', 'PSO063G4603' => 'pso', 'PSO210G0182' => 'pso', 'PSO210G0196' => 'pso', 'PSO339G0394' => 'pso', 'PSO339G4127' => 'pso', 'PSO513G0064' => 'pso', 'PSO761G0079' => 'pso', 'QL01p031003' => 'qlo', 'QL01p031078' => 'qlo', 'QL06p003004' => 'qlo', 'QL07p048731' => 'qlo', 'QL09p037427' => 'qlo', 'RcHm_v2.0_Chr3g0466361' => 'rch', 'RcHm_v2.0_Chr3g0485571' => 'rch', 'RcHm_v2.0_Chr4g0416551' => 'rch', 'RcHm_v2.0_Chr5g0065831' => 'rch', 'Rhsim01G0230500' => 'rsi', 'Rhsim05G0194000' => 'rsi', 'Rhsim08G0250400' => 'rsi', 'Sabra02G0131000' => 'sbr', 'Sabra06G0066300' => 'sbr', 'Sabra08G0115500' => 'sbr', 'Sabra09G0023900' => 'sbr', 'Sabra10G0054000' => 'sbr', 'Sabra14G0081500' => 'sbr', 'Sabra16G0147100' => 'sbr', 'SalBow2G2957' => 'sbo', 'SalBow4G3320' => 'sbo', 'SalBow8G1894' => 'sbo', 'Sc07g0007950' => 'sci', 'Sc12g0001360' => 'sci', 'Sc13g0004330' => 'sci', 'Sc20g0005010' => 'sci', 'Sed0000361' => 'sed', 'Sed0001706' => 'sed', 'Sed0002422' => 'sed', 'Sed0004029' => 'sed', 'Sed0004602' => 'sed', 'Sed0004943' => 'sed', 'Sed0008646' => 'sed', 'Sed0023313' => 'sed', 'Sed0024843' => 'sed', 'SEGI_00081' => 'sgi', 'SEGI_00947' => 'sgi', 'SEGI_04046' => 'sgi', 'SEGI_06880' => 'sgi', 'SEGI_09736' => 'sgi', 'SEGI_12741' => 'sgi', 'SEGI_14530' => 'sgi', 'SEGI_20705' => 'sgi', 'SEGI_26088' => 'sgi', 'SEGI_28323' => 'sgi', 'SEGI_33343' => 'sgi', 'SGA_v2.0_scaffold126G33775' => 'sas', 'SGA_v2.0_scaffold2G01337' => 'sas', 'SGA_v2.0_scaffold38G15006' => 'sas', 'SGA_v2.0_scaffold39G15264' => 'sas', 'SGA_v2.0_scaffold453G51880' => 'sas', 'SHI12696' => 'shi', 'SMO367G1096' => 'smo', 'Solyc01g068630.3' => 'sly', 'Solyc05g011880.3' => 'sly', 'Solyc06g076300.3' => 'sly', 'Solyc09g010940.4' => 'sly', 'Solyc09g075890.3' => 'sly', 'Sopen01g030560' => 'spe', 'Sopen05g006630' => 'spe', 'Sopen06g032720' => 'spe', 'Sopen09g005660' => 'spe', 'Sopen09g030690' => 'spe', 'Sp4g14540' => 'spa', 'Sp4g20030' => 'spa', 'Sp5g01320' => 'spa', 'Sp6g21170' => 'spa', 'Sp6g21180' => 'spa', 'Sp6g21190' => 'spa', 'Sp6g40220' => 'spa', 'TAR362G0122' => 'tar', 'TAR362G1338' => 'tar', 'TAR369G0590' => 'tar', 'TAR371G0824' => 'tar', 'TAR622G1429' => 'tar', 'TAR623G0734' => 'tar', 'TAR625G0441' => 'tar', 'TAR629G0976' => 'tar', 'TAR633G1195' => 'tar', 'TAR636G2660' => 'tar', 'THA.LOC104799440' => 'tha', 'THA.LOC104800966' => 'tha', 'THA.LOC104806559' => 'tha', 'THA.LOC104810765' => 'tha', 'THA.LOC104816266' => 'tha', 'THA.LOC104817419' => 'tha', 'THA.LOC104827021' => 'tha', 'Thecc.01G327400' => 'tca', 'Thecc.04G229200' => 'tca', 'Thecc.05G037400' => 'tca', 'Thecc.09G318600' => 'tca', 'Thecc.09G318700' => 'tca', 'Thhalv10006238m.g' => 'esa', 'Thhalv10014321m.g' => 'esa', 'Thhalv10014335m.g' => 'esa', 'Thhalv10015826m.g' => 'esa', 'Thhalv10017107m.g' => 'esa', 'Thhalv10017180m.g' => 'esa', 'Thhalv10029339m.g' => 'esa', 'TPR.G1699' => 'tpr', 'TPR.G23609' => 'tpr', 'TPR.G3081' => 'tpr', 'TPR.G40397' => 'tpr', 'TPR.G5522' => 'tpr', 'TPR.G5618' => 'tpr', 'TPR.G5626' => 'tpr', 'TWI09G1632' => 'twi', 'TWI23G1230' => 'twi', 'TWI53G1064' => 'twi', 'TWI59G0751' => 'twi', 'TWI74G0947' => 'twi', 'TWI77G0337' => 'twi', 'TWI79G1254' => 'twi', 'unitig_0.g2341' => 'ugi', 'unitig_26.g10006' => 'ugi', 'unitig_26.g10008' => 'ugi', 'unitig_26.g9192' => 'ugi', 'vmacro14547' => 'vma', 'vmacro15333' => 'vma', 'vmacro18743' => 'vma', 'vmacro20166' => 'vma', 'VMungo0331G0523' => 'vmu', 'VMungo0331G1202' => 'vmu', 'VMungo0720G1228' => 'vmu', 'VMungo0720G1514' => 'vmu', 'VMungo1080G0169' => 'vmu', 'VMungo1127G1475' => 'vmu', 'VMungo1383G1208' => 'vmu', 'VMungo1383G1698' => 'vmu', 'Zm00001eb012270' => 'zma', 'Zm00001eb054100' => 'zma', 'Zm00001eb063350' => 'zma', 'Zm00001eb328560' => 'zma', 'Zm00001eb342820' => 'zma', 'Zm00001eb362210' => 'zma', 'Zm00001eb397730' => 'zma', 'Zm00001eb399750' => 'zma' ), 'gf_id' => 'HOM05D000959', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000959' ), 'data_identifier' => 'HOM05D000959', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000959', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '622', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p07100' => 'bna', 'A03p11720' => 'bna', 'A05p08300' => 'bna', 'A05p13380' => 'bna', 'A09p54130' => 'bna', 'A10p16690' => 'bna', 'A10p16700' => 'bna', 'A10p33390' => 'bna', 'Aa31LG10G16020' => 'aar', 'Aa31LG1G11810' => 'aar', 'Aa31LG1G11830' => 'aar', 'Aa31LG1G22510' => 'aar', 'Aa31LG5G4890' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5793' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2310' => 'aag', 'Actinidia08499' => 'ach', 'Actinidia11262' => 'ach', 'Actinidia23926' => 'ach', 'Actinidia34420' => 'ach', 'Actinidia36970' => 'ach', 'Ah.02g111220' => 'amhyb', 'Ah.15g097750' => 'amhyb', 'AL4G27500' => 'aly', 'AL6G11470' => 'aly', 'AL8G35950' => 'aly', 'AL8G35960' => 'aly', 'AL8G35970' => 'aly', 'Aqoxy1G00912' => 'aox', 'Aqoxy2G02253' => 'aox', 'Aqoxy2G02411' => 'aox', 'Aqoxy5G00485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BZ66YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K8ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM4FUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6BF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HFV7XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25JBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0YNNV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MAKK6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P70IT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP2Z6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V61LZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YWP64R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3S9AI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7PGHH' => 'arhy', 'AT2G32150' => 'ath', 'AT3G62040' => 'ath', 'AT5G02230' => 'ath', 'AT5G59480' => 'ath', 'AT5G59490' => 'ath', 'ATR0332G060' => 'atr', 'ATR0559G190' => 'atr', 'ATR0693G294' => 'atr', 'Atru.chr3.3975' => 'acertr', 'Atru.chr3.3976' => 'acertr', 'Atru.chr3.3977' => 'acertr', 'Atru.chr4.2498' => 'acertr', 'Atru.chr5.838' => 'acertr', 'Atru.chr8.1990' => 'acertr', 'Atru.chr8.1991' => 'acertr', 'Atru.chr8.1992' => 'acertr', 'AUR62001759' => 'cqu', 'AUR62009545' => 'cqu', 'AUR62010474' => 'cqu', 'AUR62025820' => 'cqu', 'AUR62030422' => 'cqu', 'AUR62033605' => 'cqu', 'AUR62038615' => 'cqu', 'AUR62041347' => 'cqu', 'BcaB01g04574' => 'bca', 'BcaB02g09263' => 'bca', 'BcaB02g10453' => 'bca', 'BcaB05g22513' => 'bca', 'BcaB08g36253' => 'bca', 'BcaB08g36254' => 'bca', 'BcaC01g06519' => 'bca', 'BcaC02g11889' => 'bca', 'BcaC03g14010' => 'bca', 'BcaC03g18439' => 'bca', 'BcaC04g19765' => 'bca', 'BcaC09g48432' => 'bca', 'BcaNung07302' => 'bca', 'BolC2t06040H' => 'bol', 'BolC2t07346H' => 'bol', 'BolC3t13817H' => 'bol', 'BolC4t22625H' => 'bol', 'BolC4t23297H' => 'bol', 'BolC8t51278H' => 'bol', 'BolC9t58050H' => 'bol', 'BolC9t58051H' => 'bol', 'BolC9t60163H' => 'bol', 'BraA02t04712Z' => 'bra', 'BraA02t05791Z' => 'bra', 'BraA03t10483Z' => 'bra', 'BraA05t19795Z' => 'bra', 'BraA05t20276Z' => 'bra', 'BraA09t40827Z' => 'bra', 'BraA10t43750Z' => 'bra', 'BraA10t43751Z' => 'bra', 'BraA10t45370Z' => 'bra', 'C02p00400' => 'bna', 'C02p12460' => 'bna', 'C03p13680' => 'bna', 'C04p10270' => 'bna', 'C04p17500' => 'bna', 'C08p37010' => 'bna', 'C09p51880' => 'bna', 'C09p51890' => 'bna', 'C09p74300' => 'bna', 'CAN.G179.26' => 'can', 'CAN.G3384.1' => 'can', 'CAN.G394.68' => 'can', 'CAN.G907.13' => 'can', 'CANSAT11G0012' => 'cansat', 'CANSAT25G1586' => 'cansat', 'CANSAT35G0735' => 'cansat', 'CANSAT54G0556' => 'cansat', 'CANSAT64G0356' => 'cansat', 'CANSAT78G2042' => 'cansat', 'CARHR125920' => 'chi', 'CARHR131910' => 'chi', 'CARHR172390' => 'chi', 'CARHR211140' => 'chi', 'CARHR285850' => 'chi', 'CARHR285860' => 'chi', 'Carub.0004s1347' => 'cru', 'Carub.0004s1960' => 'cru', 'Carub.0005s2880' => 'cru', 'Carub.0006s0107' => 'cru', 'Carub.0008s2015' => 'cru', 'Carub.0008s2016' => 'cru', 'Carub.0008s2017' => 'cru', 'Ca_01315_v3' => 'car', 'Ca_05063_v3' => 'car', 'Ca_10231_v3' => 'car', 'Ca_10913_v3' => 'car', 'Ca_19156_v3' => 'car', 'Ca_23644_v3' => 'car', 'Ca_26735_v3' => 'car', 'Cc01_g13130' => 'ccan', 'Cc02_g21690' => 'ccan', 'Cc03_g03600' => 'ccan', 'Cc06_g02510' => 'ccan', 'CDE02G1265' => 'cde', 'CDE05G0415' => 'cde', 'CDE08G1082' => 'cde', 'Cfa005780' => 'cfa', 'Cfa011522' => 'cfa', 'Cfa011523' => 'cfa', 'Cfa015627' => 'cfa', 'Cfa017359' => 'cfa', 'Ciclev10005687m.g' => 'ccl', 'Ciclev10012173m.g' => 'ccl', 'Ciclev10021621m.g' => 'ccl', 'Ciclev10028968m.g' => 'ccl', 'Ciclev10029907m.g' => 'ccl', 'CiPaw.01G164800' => 'cil', 'CiPaw.07G083700' => 'cil', 'CiPaw.07G127000' => 'cil', 'CiPaw.07G136900' => 'cil', 'CiPaw.08G081700' => 'cil', 'CiPaw.09G194600' => 'cil', 'CiPaw.10G146500' => 'cil', 'CiPaw.13G091500' => 'cil', 'CiPaw.13G091600' => 'cil', 'ClCG00G003390' => 'cla', 'ClCG01G007220' => 'cla', 'ClCG03G001370' => 'cla', 'ClCG04G008100' => 'cla', 'ClCG06G006110' => 'cla', 'ClCG06G006130' => 'cla', 'ClCG10G021210' => 'cla', 'COL.COLO4_07648' => 'col', 'COL.COLO4_07650' => 'col', 'COL.COLO4_07651' => 'col', 'COL.COLO4_14780' => 'col', 'COL.COLO4_18546' => 'col', 'COL.COLO4_18547' => 'col', 'COL.COLO4_23103' => 'col', 'COL.COLO4_30419' => 'col', 'COL.COLO4_34232' => 'col', 'Cpa.g.sc169.20' => 'cpa', 'Cpa.g.sc57.45' => 'cpa', 'Cpa.g.sc58.124' => 'cpa', 'Cpa.g.sc58.125' => 'cpa', 'Cpa.g.sc81.118' => 'cpa', 'Cpa.g.sc81.119' => 'cpa', 'Cre12.g524700' => 'cre', 'CsaV3_1G034430' => 'csa', 'CsaV3_1G034440' => 'csa', 'CsaV3_1G034450' => 'csa', 'CsaV3_3G034830' => 'csa', 'CsaV3_4G025090' => 'csa', 'CsaV3_5G018660' => 'csa', 'CsaV3_6G038160' => 'csa', 'CSS0003447' => 'camsi', 'CSS0017840' => 'camsi', 'CSS0019260' => 'camsi', 'CSS0040375' => 'camsi', 'CSS0042533' => 'camsi', 'DCAR_005960' => 'dca', 'DCAR_012104' => 'dca', 'DCAR_012105' => 'dca', 'DCAR_012293' => 'dca', 'DCAR_015632' => 'dca', 'DCAR_024602' => 'dca', 'DCAR_028752' => 'dca', 'Dinv06261' => 'din', 'Dinv13982' => 'din', 'Dinv17029' => 'din', 'Dinv18463' => 'din', 'Dinv33181' => 'din', 'Dinv35585' => 'din', 'Dinv37161' => 'din', 'Dinv42977' => 'din', 'Dinv43122' => 'din', 'Dinv44517' => 'din', 'Duzib093G0256' => 'dzi', 'Duzib106G1254' => 'dzi', 'Duzib128G1789' => 'dzi', 'Duzib133G0633' => 'dzi', 'Duzib138G0510' => 'dzi', 'Duzib150G1084' => 'dzi', 'Duzib168G0488' => 'dzi', 'Duzib168G1523' => 'dzi', 'Duzib170G0133' => 'dzi', 'ECA234G1433' => 'eca', 'ECA236G1432' => 'eca', 'ECA236G2256' => 'eca', 'ECA236G2365' => 'eca', 'ECA236G4830' => 'eca', 'ECA248G1505' => 'eca', 'EL10Ac3g06431' => 'bvu', 'EL10Ac5g12577' => 'bvu', 'EL10Ac6g13533' => 'bvu', 'EL10Ac7g16045' => 'bvu', 'Eucgr.A01281' => 'egr', 'Eucgr.B02326' => 'egr', 'Eucgr.H03532' => 'egr', 'Eucgr.K00553' => 'egr', 'Eucgr.K03116' => 'egr', 'FAN02G3963' => 'fan', 'FAN05G0438' => 'fan', 'FAN09G2434' => 'fan', 'FAN12G3984' => 'fan', 'FAN14G0798' => 'fan', 'FAN17G0652' => 'fan', 'FAN19G1988' => 'fan', 'FAN22G0632' => 'fan', 'FAN23G0387' => 'fan', 'FAN26G1323' => 'fan', 'FAN28G0666' => 'fan', 'FvH4_1g26080' => 'fve', 'FvH4_3g36780' => 'fve', 'FvH4_4g15270' => 'fve', 'FvH4_6g13490' => 'fve', 'Glyma.01G098700' => 'gma', 'Glyma.03G065900' => 'gma', 'Glyma.03G073754' => 'gma', 'Glyma.03G073758' => 'gma', 'Glyma.03G083200' => 'gma', 'Glyma.03G225500' => 'gma', 'Glyma.05G037766' => 'gma', 'Glyma.07G133500' => 'gma', 'Glyma.10G139400' => 'gma', 'Glyma.10G248900' => 'gma', 'Glyma.11G137800' => 'gma', 'Glyma.12G061300' => 'gma', 'Glyma.13G337900' => 'gma', 'Glyma.15G036600' => 'gma', 'Glyma.18G182800' => 'gma', 'Glyma.19G222500' => 'gma', 'Glyma.20G144800' => 'gma', 'Gohir.A01G222000' => 'ghi', 'Gohir.A03G044000' => 'ghi', 'Gohir.A03G044100' => 'ghi', 'Gohir.A04G083100' => 'ghi', 'Gohir.A07G127200' => 'ghi', 'Gohir.A07G132400' => 'ghi', 'Gohir.A08G000700' => 'ghi', 'Gohir.A11G327300' => 'ghi', 'Gohir.D01G211500' => 'ghi', 'Gohir.D03G123400' => 'ghi', 'Gohir.D03G123500' => 'ghi', 'Gohir.D04G121800' => 'ghi', 'Gohir.D07G131500' => 'ghi', 'Gohir.D07G136600' => 'ghi', 'Gohir.D08G011600' => 'ghi', 'Gohir.D11G346200' => 'ghi', 'Gorai.001G142800' => 'gra', 'Gorai.001G148700' => 'gra', 'Gorai.002G257300' => 'gra', 'Gorai.003G130000' => 'gra', 'Gorai.003G130100' => 'gra', 'Gorai.004G005300' => 'gra', 'Gorai.007G376500' => 'gra', 'Gorai.012G104700' => 'gra', 'GSVIVG01017946001' => 'vvi', 'GSVIVG01024928001' => 'vvi', 'GSVIVG01028227001' => 'vvi', 'GSVIVG01034151001' => 'vvi', 'HanXRQChr05g0135031' => 'han', 'HanXRQChr05g0135041' => 'han', 'HanXRQChr05g0140021' => 'han', 'HanXRQChr06g0178981' => 'han', 'HanXRQChr07g0188251' => 'han', 'HanXRQChr08g0235311' => 'han', 'HanXRQChr09g0271011' => 'han', 'HanXRQChr10g0293321' => 'han', 'HanXRQChr13g0388171' => 'han', 'Haze_00916' => 'cav', 'Haze_05063' => 'cav', 'Haze_20814' => 'cav', 'Haze_24128' => 'cav', 'Hma1.2p1_0745F.1_g212010' => 'hma', 'Hma1.2p1_0757F.1_g213260' => 'hma', 'Hma1.2p1_0936F.1_g238840' => 'hma', 'Hma1.2p1_1735F.1_g299890' => 'hma', 'Hma1.2p1_1861F.1_g305685' => 'hma', 'HPP92_003397' => 'vpl', 'HPP92_012597' => 'vpl', 'HPP92_015520' => 'vpl', 'HPP92_015539' => 'vpl', 'HPP92_020373' => 'vpl', 'Hund04938' => 'sun', 'Hund10677' => 'sun', 'Hund11033' => 'sun', 'Hund12155' => 'sun', 'Lalb_Chr01g0022551' => 'lal', 'Lalb_Chr03g0042341' => 'lal', 'Lalb_Chr07g0192931' => 'lal', 'Lalb_Chr12g0209551' => 'lal', 'Lalb_Chr19g0125251' => 'lal', 'Lalb_Chr19g0137891' => 'lal', 'Lalb_Chr21g0304641' => 'lal', 'Lalb_Chr21g0309881' => 'lal', 'Lj1A5T12' => 'lonja', 'Lj1C148G10' => 'lonja', 'Lj2A93T83' => 'lonja', 'Lj3A738G68' => 'lonja', 'Lj3C966T1' => 'lonja', 'Lj3g0018958' => 'lja', 'Lj3g0021831' => 'lja', 'Lj3g0025443' => 'lja', 'Lj4g0026809' => 'lja', 'Lj5g0012558' => 'lja', 'Lj5g0021586' => 'lja', 'Lsat_1_v5_gn_5_156840' => 'lsa', 'Lsat_1_v5_gn_8_73460' => 'lsa', 'Lsat_1_v5_gn_8_73481' => 'lsa', 'Lsat_1_v5_gn_9_31601' => 'lsa', 'Lsat_1_v5_gn_9_77320' => 'lsa', 'Manes.01G171300' => 'mes', 'Manes.01G171400' => 'mes', 'Manes.01G236100' => 'mes', 'Manes.02G130500' => 'mes', 'Manes.02G130600' => 'mes', 'Manes.03G180200' => 'mes', 'Manes.05G007000' => 'mes', 'Manes.08G084400' => 'mes', 'Manes.09G092600' => 'mes', 'Manes.15G027900' => 'mes', 'MBI04_g40948_MAGBIO' => 'mbi', 'MBI14_g12123_MAGBIO' => 'mbi', 'MBI18_g28915_MAGBIO' => 'mbi', 'MCO09G053' => 'mco', 'MCO11G782' => 'mco', 'MCO15G215' => 'mco', 'MD03G1088500' => 'mdo', 'MD03G1088600' => 'mdo', 'MD04G1130800' => 'mdo', 'MD09G1291700' => 'mdo', 'MD11G1097500' => 'mdo', 'MD11G1097600' => 'mdo', 'MD12G1143900' => 'mdo', 'MD13G1191400' => 'mdo', 'MD16G1191500' => 'mdo', 'Medtr1g085570' => 'mtr', 'Medtr1g104610' => 'mtr', 'Medtr2g097520' => 'mtr', 'Medtr4g021800' => 'mtr', 'Medtr4g021825' => 'mtr', 'Medtr4g064270' => 'mtr', 'Medtr4g064380' => 'mtr', 'Medtr7g062150' => 'mtr', 'MELO3C003138.2' => 'cme', 'MELO3C005187.2' => 'cme', 'MELO3C009252.2' => 'cme', 'MELO3C014481.2' => 'cme', 'MELO3C020616.2' => 'cme', 'MELO3C020617.2' => 'cme', 'MELO3C020618.2' => 'cme', 'Migut.G00328' => 'egut', 'Migut.J00320' => 'egut', 'Migut.L01000' => 'egut', 'Migut.L01953' => 'egut', 'MSTRG.10253' => 'ama', 'MSTRG.19077' => 'ama', 'MSTRG.26780' => 'ama', 'MSTRG.4023' => 'ama', 'MSTRG.5655' => 'ama', 'MSTRG.9992' => 'ama', 'Nitab4.5_0000043g0310' => 'nta', 'Nitab4.5_0000463g0080' => 'nta', 'Nitab4.5_0000705g0170' => 'nta', 'Nitab4.5_0001326g0060' => 'nta', 'Nitab4.5_0001628g0030' => 'nta', 'Nitab4.5_0002103g0110' => 'nta', 'Nitab4.5_0002946g0030' => 'nta', 'Nitab4.5_0004639g0030' => 'nta', 'Nn2g11149' => 'nnu', 'Nn2g13389' => 'nnu', 'Nn4g25326' => 'nnu', 'Nn4g26290' => 'nnu', 'Nn5g29865' => 'nnu', 'Oeu004163.1' => 'oeu', 'Oeu006901.1' => 'oeu', 'Oeu010096.1' => 'oeu', 'Oeu024340.1' => 'oeu', 'Oeu048369.1' => 'oeu', 'Os01g0973000' => 'osa', 'Os03g0273800' => 'osa', 'Os03g0701200' => 'osa', 'Os03g0834050' => 'osa', 'Os07g0634400' => 'osa', 'Peaxi162Scf00092g01414' => 'pax', 'Peaxi162Scf00165g00818' => 'pax', 'Peaxi162Scf00309g00516' => 'pax', 'Peaxi162Scf00774g00218' => 'pax', 'PGR004G1824' => 'pgr', 'PGR004G2606' => 'pgr', 'PGR031G2716' => 'pgr', 'PGR102G2460' => 'pgr', 'PGR142G2599' => 'pgr', 'PGSC0003DMG400000843' => 'stu', 'PGSC0003DMG400008829' => 'stu', 'PGSC0003DMG400030418' => 'stu', 'PGSC0003DMG400031834' => 'stu', 'PGSC0003DMG401028300' => 'stu', 'PGSC0003DMG402028300' => 'stu', 'Phvul.001G219300' => 'pvu', 'Phvul.007G056000' => 'pvu', 'Phvul.007G208000' => 'pvu', 'Phvul.008G119500' => 'pvu', 'Phvul.010G011200' => 'pvu', 'Phvul.010G014800' => 'pvu', 'Phvul.011G062900' => 'pvu', 'Phvul.L007043' => 'pvu', 'Potri.001G242300' => 'ptr', 'Potri.002G185300' => 'ptr', 'Potri.006G086900' => 'ptr', 'Potri.008G151700' => 'ptr', 'Potri.009G033500' => 'ptr', 'Potri.010G089300' => 'ptr', 'Potri.014G110800' => 'ptr', 'Pp3c27_8130' => 'ppa', 'Pp3c6_27410' => 'ppa', 'PRCOL_00001659' => 'pco', 'PRCOL_00001927' => 'pco', 'PRCOL_00003649' => 'pco', 'Prupe.1G011600' => 'ppe', 'Prupe.3G000800' => 'ppe', 'Prupe.3G001100' => 'ppe', 'Prupe.6G072700' => 'ppe', 'Prupe.6G072800' => 'ppe', 'Prupe.6G257300' => 'ppe', 'Prupe.8G033000' => 'ppe', 'Psat0s2633g0080' => 'psa', 'Psat0s3396g0080' => 'psa', 'Psat0s3396g0200' => 'psa', 'Psat3g139080' => 'psa', 'Psat5g285080' => 'psa', 'Psat6g157760' => 'psa', 'Psat6g208440' => 'psa', 'Psat7g215320' => 'psa', 'Psat7g215400' => 'psa', 'Psat7g235600' => 'psa', 'Psat7g235760' => 'psa', 'PSO063G4603' => 'pso', 'PSO210G0182' => 'pso', 'PSO210G0196' => 'pso', 'PSO339G0394' => 'pso', 'PSO339G4127' => 'pso', 'PSO513G0064' => 'pso', 'PSO761G0079' => 'pso', 'QL01p031003' => 'qlo', 'QL01p031078' => 'qlo', 'QL06p003004' => 'qlo', 'QL07p048731' => 'qlo', 'QL09p037427' => 'qlo', 'RcHm_v2.0_Chr3g0466361' => 'rch', 'RcHm_v2.0_Chr3g0485571' => 'rch', 'RcHm_v2.0_Chr4g0416551' => 'rch', 'RcHm_v2.0_Chr5g0065831' => 'rch', 'Rhsim01G0230500' => 'rsi', 'Rhsim05G0194000' => 'rsi', 'Rhsim08G0250400' => 'rsi', 'Sabra02G0131000' => 'sbr', 'Sabra06G0066300' => 'sbr', 'Sabra08G0115500' => 'sbr', 'Sabra09G0023900' => 'sbr', 'Sabra10G0054000' => 'sbr', 'Sabra14G0081500' => 'sbr', 'Sabra16G0147100' => 'sbr', 'SalBow2G2957' => 'sbo', 'SalBow4G3320' => 'sbo', 'SalBow8G1894' => 'sbo', 'Sc07g0007950' => 'sci', 'Sc12g0001360' => 'sci', 'Sc13g0004330' => 'sci', 'Sc20g0005010' => 'sci', 'Sed0000361' => 'sed', 'Sed0001706' => 'sed', 'Sed0002422' => 'sed', 'Sed0004029' => 'sed', 'Sed0004602' => 'sed', 'Sed0004943' => 'sed', 'Sed0008646' => 'sed', 'Sed0023313' => 'sed', 'Sed0024843' => 'sed', 'SEGI_00081' => 'sgi', 'SEGI_00947' => 'sgi', 'SEGI_04046' => 'sgi', 'SEGI_06880' => 'sgi', 'SEGI_09736' => 'sgi', 'SEGI_12741' => 'sgi', 'SEGI_14530' => 'sgi', 'SEGI_20705' => 'sgi', 'SEGI_26088' => 'sgi', 'SEGI_28323' => 'sgi', 'SEGI_33343' => 'sgi', 'SGA_v2.0_scaffold126G33775' => 'sas', 'SGA_v2.0_scaffold2G01337' => 'sas', 'SGA_v2.0_scaffold38G15006' => 'sas', 'SGA_v2.0_scaffold39G15264' => 'sas', 'SGA_v2.0_scaffold453G51880' => 'sas', 'SHI12696' => 'shi', 'SMO367G1096' => 'smo', 'Solyc01g068630.3' => 'sly', 'Solyc05g011880.3' => 'sly', 'Solyc06g076300.3' => 'sly', 'Solyc09g010940.4' => 'sly', 'Solyc09g075890.3' => 'sly', 'Sopen01g030560' => 'spe', 'Sopen05g006630' => 'spe', 'Sopen06g032720' => 'spe', 'Sopen09g005660' => 'spe', 'Sopen09g030690' => 'spe', 'Sp4g14540' => 'spa', 'Sp4g20030' => 'spa', 'Sp5g01320' => 'spa', 'Sp6g21170' => 'spa', 'Sp6g21180' => 'spa', 'Sp6g21190' => 'spa', 'Sp6g40220' => 'spa', 'TAR362G0122' => 'tar', 'TAR362G1338' => 'tar', 'TAR369G0590' => 'tar', 'TAR371G0824' => 'tar', 'TAR622G1429' => 'tar', 'TAR623G0734' => 'tar', 'TAR625G0441' => 'tar', 'TAR629G0976' => 'tar', 'TAR633G1195' => 'tar', 'TAR636G2660' => 'tar', 'THA.LOC104799440' => 'tha', 'THA.LOC104800966' => 'tha', 'THA.LOC104806559' => 'tha', 'THA.LOC104810765' => 'tha', 'THA.LOC104816266' => 'tha', 'THA.LOC104817419' => 'tha', 'THA.LOC104827021' => 'tha', 'Thecc.01G327400' => 'tca', 'Thecc.04G229200' => 'tca', 'Thecc.05G037400' => 'tca', 'Thecc.09G318600' => 'tca', 'Thecc.09G318700' => 'tca', 'Thhalv10006238m.g' => 'esa', 'Thhalv10014321m.g' => 'esa', 'Thhalv10014335m.g' => 'esa', 'Thhalv10015826m.g' => 'esa', 'Thhalv10017107m.g' => 'esa', 'Thhalv10017180m.g' => 'esa', 'Thhalv10029339m.g' => 'esa', 'TPR.G1699' => 'tpr', 'TPR.G23609' => 'tpr', 'TPR.G3081' => 'tpr', 'TPR.G40397' => 'tpr', 'TPR.G5522' => 'tpr', 'TPR.G5618' => 'tpr', 'TPR.G5626' => 'tpr', 'TWI09G1632' => 'twi', 'TWI23G1230' => 'twi', 'TWI53G1064' => 'twi', 'TWI59G0751' => 'twi', 'TWI74G0947' => 'twi', 'TWI77G0337' => 'twi', 'TWI79G1254' => 'twi', 'unitig_0.g2341' => 'ugi', 'unitig_26.g10006' => 'ugi', 'unitig_26.g10008' => 'ugi', 'unitig_26.g9192' => 'ugi', 'vmacro14547' => 'vma', 'vmacro15333' => 'vma', 'vmacro18743' => 'vma', 'vmacro20166' => 'vma', 'VMungo0331G0523' => 'vmu', 'VMungo0331G1202' => 'vmu', 'VMungo0720G1228' => 'vmu', 'VMungo0720G1514' => 'vmu', 'VMungo1080G0169' => 'vmu', 'VMungo1127G1475' => 'vmu', 'VMungo1383G1208' => 'vmu', 'VMungo1383G1698' => 'vmu', 'Zm00001eb012270' => 'zma', 'Zm00001eb054100' => 'zma', 'Zm00001eb063350' => 'zma', 'Zm00001eb328560' => 'zma', 'Zm00001eb342820' => 'zma', 'Zm00001eb362210' => 'zma', 'Zm00001eb397730' => 'zma', 'Zm00001eb399750' => 'zma' ) $gf_id = 'HOM05D000959' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000959' ) $data_identifier = 'HOM05D000959' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 5, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 5, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 10, 'mbi' => (int) 3, 'mco' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 2, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 3, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 11, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399750' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000959', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '622', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p07100' => 'bna', 'A03p11720' => 'bna', 'A05p08300' => 'bna', 'A05p13380' => 'bna', 'A09p54130' => 'bna', 'A10p16690' => 'bna', 'A10p16700' => 'bna', 'A10p33390' => 'bna', 'Aa31LG10G16020' => 'aar', 'Aa31LG1G11810' => 'aar', 'Aa31LG1G11830' => 'aar', 'Aa31LG1G22510' => 'aar', 'Aa31LG5G4890' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5793' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2310' => 'aag', 'Actinidia08499' => 'ach', 'Actinidia11262' => 'ach', 'Actinidia23926' => 'ach', 'Actinidia34420' => 'ach', 'Actinidia36970' => 'ach', 'Ah.02g111220' => 'amhyb', 'Ah.15g097750' => 'amhyb', 'AL4G27500' => 'aly', 'AL6G11470' => 'aly', 'AL8G35950' => 'aly', 'AL8G35960' => 'aly', 'AL8G35970' => 'aly', 'Aqoxy1G00912' => 'aox', 'Aqoxy2G02253' => 'aox', 'Aqoxy2G02411' => 'aox', 'Aqoxy5G00485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BZ66YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K8ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM4FUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6BF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HFV7XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25JBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0YNNV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MAKK6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P70IT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP2Z6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V61LZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YWP64R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3S9AI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7PGHH' => 'arhy', 'AT2G32150' => 'ath', 'AT3G62040' => 'ath', 'AT5G02230' => 'ath', 'AT5G59480' => 'ath', 'AT5G59490' => 'ath', 'ATR0332G060' => 'atr', 'ATR0559G190' => 'atr', 'ATR0693G294' => 'atr', 'Atru.chr3.3975' => 'acertr', 'Atru.chr3.3976' => 'acertr', 'Atru.chr3.3977' => 'acertr', 'Atru.chr4.2498' => 'acertr', 'Atru.chr5.838' => 'acertr', 'Atru.chr8.1990' => 'acertr', 'Atru.chr8.1991' => 'acertr', 'Atru.chr8.1992' => 'acertr', 'AUR62001759' => 'cqu', 'AUR62009545' => 'cqu', 'AUR62010474' => 'cqu', 'AUR62025820' => 'cqu', 'AUR62030422' => 'cqu', 'AUR62033605' => 'cqu', 'AUR62038615' => 'cqu', 'AUR62041347' => 'cqu', 'BcaB01g04574' => 'bca', 'BcaB02g09263' => 'bca', 'BcaB02g10453' => 'bca', 'BcaB05g22513' => 'bca', 'BcaB08g36253' => 'bca', 'BcaB08g36254' => 'bca', 'BcaC01g06519' => 'bca', 'BcaC02g11889' => 'bca', 'BcaC03g14010' => 'bca', 'BcaC03g18439' => 'bca', 'BcaC04g19765' => 'bca', 'BcaC09g48432' => 'bca', 'BcaNung07302' => 'bca', 'BolC2t06040H' => 'bol', 'BolC2t07346H' => 'bol', 'BolC3t13817H' => 'bol', 'BolC4t22625H' => 'bol', 'BolC4t23297H' => 'bol', 'BolC8t51278H' => 'bol', 'BolC9t58050H' => 'bol', 'BolC9t58051H' => 'bol', 'BolC9t60163H' => 'bol', 'BraA02t04712Z' => 'bra', 'BraA02t05791Z' => 'bra', 'BraA03t10483Z' => 'bra', 'BraA05t19795Z' => 'bra', 'BraA05t20276Z' => 'bra', 'BraA09t40827Z' => 'bra', 'BraA10t43750Z' => 'bra', 'BraA10t43751Z' => 'bra', 'BraA10t45370Z' => 'bra', 'C02p00400' => 'bna', 'C02p12460' => 'bna', 'C03p13680' => 'bna', 'C04p10270' => 'bna', 'C04p17500' => 'bna', 'C08p37010' => 'bna', 'C09p51880' => 'bna', 'C09p51890' => 'bna', 'C09p74300' => 'bna', 'CAN.G179.26' => 'can', 'CAN.G3384.1' => 'can', 'CAN.G394.68' => 'can', 'CAN.G907.13' => 'can', 'CANSAT11G0012' => 'cansat', 'CANSAT25G1586' => 'cansat', 'CANSAT35G0735' => 'cansat', 'CANSAT54G0556' => 'cansat', 'CANSAT64G0356' => 'cansat', 'CANSAT78G2042' => 'cansat', 'CARHR125920' => 'chi', 'CARHR131910' => 'chi', 'CARHR172390' => 'chi', 'CARHR211140' => 'chi', 'CARHR285850' => 'chi', 'CARHR285860' => 'chi', 'Carub.0004s1347' => 'cru', 'Carub.0004s1960' => 'cru', 'Carub.0005s2880' => 'cru', 'Carub.0006s0107' => 'cru', 'Carub.0008s2015' => 'cru', 'Carub.0008s2016' => 'cru', 'Carub.0008s2017' => 'cru', 'Ca_01315_v3' => 'car', 'Ca_05063_v3' => 'car', 'Ca_10231_v3' => 'car', 'Ca_10913_v3' => 'car', 'Ca_19156_v3' => 'car', 'Ca_23644_v3' => 'car', 'Ca_26735_v3' => 'car', 'Cc01_g13130' => 'ccan', 'Cc02_g21690' => 'ccan', 'Cc03_g03600' => 'ccan', 'Cc06_g02510' => 'ccan', 'CDE02G1265' => 'cde', 'CDE05G0415' => 'cde', 'CDE08G1082' => 'cde', 'Cfa005780' => 'cfa', 'Cfa011522' => 'cfa', 'Cfa011523' => 'cfa', 'Cfa015627' => 'cfa', 'Cfa017359' => 'cfa', 'Ciclev10005687m.g' => 'ccl', 'Ciclev10012173m.g' => 'ccl', 'Ciclev10021621m.g' => 'ccl', 'Ciclev10028968m.g' => 'ccl', 'Ciclev10029907m.g' => 'ccl', 'CiPaw.01G164800' => 'cil', 'CiPaw.07G083700' => 'cil', 'CiPaw.07G127000' => 'cil', 'CiPaw.07G136900' => 'cil', 'CiPaw.08G081700' => 'cil', 'CiPaw.09G194600' => 'cil', 'CiPaw.10G146500' => 'cil', 'CiPaw.13G091500' => 'cil', 'CiPaw.13G091600' => 'cil', 'ClCG00G003390' => 'cla', 'ClCG01G007220' => 'cla', 'ClCG03G001370' => 'cla', 'ClCG04G008100' => 'cla', 'ClCG06G006110' => 'cla', 'ClCG06G006130' => 'cla', 'ClCG10G021210' => 'cla', 'COL.COLO4_07648' => 'col', 'COL.COLO4_07650' => 'col', 'COL.COLO4_07651' => 'col', 'COL.COLO4_14780' => 'col', 'COL.COLO4_18546' => 'col', 'COL.COLO4_18547' => 'col', 'COL.COLO4_23103' => 'col', 'COL.COLO4_30419' => 'col', 'COL.COLO4_34232' => 'col', 'Cpa.g.sc169.20' => 'cpa', 'Cpa.g.sc57.45' => 'cpa', 'Cpa.g.sc58.124' => 'cpa', 'Cpa.g.sc58.125' => 'cpa', 'Cpa.g.sc81.118' => 'cpa', 'Cpa.g.sc81.119' => 'cpa', 'Cre12.g524700' => 'cre', 'CsaV3_1G034430' => 'csa', 'CsaV3_1G034440' => 'csa', 'CsaV3_1G034450' => 'csa', 'CsaV3_3G034830' => 'csa', 'CsaV3_4G025090' => 'csa', 'CsaV3_5G018660' => 'csa', 'CsaV3_6G038160' => 'csa', 'CSS0003447' => 'camsi', 'CSS0017840' => 'camsi', 'CSS0019260' => 'camsi', 'CSS0040375' => 'camsi', 'CSS0042533' => 'camsi', 'DCAR_005960' => 'dca', 'DCAR_012104' => 'dca', 'DCAR_012105' => 'dca', 'DCAR_012293' => 'dca', 'DCAR_015632' => 'dca', 'DCAR_024602' => 'dca', 'DCAR_028752' => 'dca', 'Dinv06261' => 'din', 'Dinv13982' => 'din', 'Dinv17029' => 'din', 'Dinv18463' => 'din', 'Dinv33181' => 'din', 'Dinv35585' => 'din', 'Dinv37161' => 'din', 'Dinv42977' => 'din', 'Dinv43122' => 'din', 'Dinv44517' => 'din', 'Duzib093G0256' => 'dzi', 'Duzib106G1254' => 'dzi', 'Duzib128G1789' => 'dzi', 'Duzib133G0633' => 'dzi', 'Duzib138G0510' => 'dzi', 'Duzib150G1084' => 'dzi', 'Duzib168G0488' => 'dzi', 'Duzib168G1523' => 'dzi', 'Duzib170G0133' => 'dzi', 'ECA234G1433' => 'eca', 'ECA236G1432' => 'eca', 'ECA236G2256' => 'eca', 'ECA236G2365' => 'eca', 'ECA236G4830' => 'eca', 'ECA248G1505' => 'eca', 'EL10Ac3g06431' => 'bvu', 'EL10Ac5g12577' => 'bvu', 'EL10Ac6g13533' => 'bvu', 'EL10Ac7g16045' => 'bvu', 'Eucgr.A01281' => 'egr', 'Eucgr.B02326' => 'egr', 'Eucgr.H03532' => 'egr', 'Eucgr.K00553' => 'egr', 'Eucgr.K03116' => 'egr', 'FAN02G3963' => 'fan', 'FAN05G0438' => 'fan', 'FAN09G2434' => 'fan', 'FAN12G3984' => 'fan', 'FAN14G0798' => 'fan', 'FAN17G0652' => 'fan', 'FAN19G1988' => 'fan', 'FAN22G0632' => 'fan', 'FAN23G0387' => 'fan', 'FAN26G1323' => 'fan', 'FAN28G0666' => 'fan', 'FvH4_1g26080' => 'fve', 'FvH4_3g36780' => 'fve', 'FvH4_4g15270' => 'fve', 'FvH4_6g13490' => 'fve', 'Glyma.01G098700' => 'gma', 'Glyma.03G065900' => 'gma', 'Glyma.03G073754' => 'gma', 'Glyma.03G073758' => 'gma', 'Glyma.03G083200' => 'gma', 'Glyma.03G225500' => 'gma', 'Glyma.05G037766' => 'gma', 'Glyma.07G133500' => 'gma', 'Glyma.10G139400' => 'gma', 'Glyma.10G248900' => 'gma', 'Glyma.11G137800' => 'gma', 'Glyma.12G061300' => 'gma', 'Glyma.13G337900' => 'gma', 'Glyma.15G036600' => 'gma', 'Glyma.18G182800' => 'gma', 'Glyma.19G222500' => 'gma', 'Glyma.20G144800' => 'gma', 'Gohir.A01G222000' => 'ghi', 'Gohir.A03G044000' => 'ghi', 'Gohir.A03G044100' => 'ghi', 'Gohir.A04G083100' => 'ghi', 'Gohir.A07G127200' => 'ghi', 'Gohir.A07G132400' => 'ghi', 'Gohir.A08G000700' => 'ghi', 'Gohir.A11G327300' => 'ghi', 'Gohir.D01G211500' => 'ghi', 'Gohir.D03G123400' => 'ghi', 'Gohir.D03G123500' => 'ghi', 'Gohir.D04G121800' => 'ghi', 'Gohir.D07G131500' => 'ghi', 'Gohir.D07G136600' => 'ghi', 'Gohir.D08G011600' => 'ghi', 'Gohir.D11G346200' => 'ghi', 'Gorai.001G142800' => 'gra', 'Gorai.001G148700' => 'gra', 'Gorai.002G257300' => 'gra', 'Gorai.003G130000' => 'gra', 'Gorai.003G130100' => 'gra', 'Gorai.004G005300' => 'gra', 'Gorai.007G376500' => 'gra', 'Gorai.012G104700' => 'gra', 'GSVIVG01017946001' => 'vvi', 'GSVIVG01024928001' => 'vvi', 'GSVIVG01028227001' => 'vvi', 'GSVIVG01034151001' => 'vvi', 'HanXRQChr05g0135031' => 'han', 'HanXRQChr05g0135041' => 'han', 'HanXRQChr05g0140021' => 'han', 'HanXRQChr06g0178981' => 'han', 'HanXRQChr07g0188251' => 'han', 'HanXRQChr08g0235311' => 'han', 'HanXRQChr09g0271011' => 'han', 'HanXRQChr10g0293321' => 'han', 'HanXRQChr13g0388171' => 'han', 'Haze_00916' => 'cav', 'Haze_05063' => 'cav', 'Haze_20814' => 'cav', 'Haze_24128' => 'cav', 'Hma1.2p1_0745F.1_g212010' => 'hma', 'Hma1.2p1_0757F.1_g213260' => 'hma', 'Hma1.2p1_0936F.1_g238840' => 'hma', 'Hma1.2p1_1735F.1_g299890' => 'hma', 'Hma1.2p1_1861F.1_g305685' => 'hma', 'HPP92_003397' => 'vpl', 'HPP92_012597' => 'vpl', 'HPP92_015520' => 'vpl', 'HPP92_015539' => 'vpl', 'HPP92_020373' => 'vpl', 'Hund04938' => 'sun', 'Hund10677' => 'sun', 'Hund11033' => 'sun', 'Hund12155' => 'sun', 'Lalb_Chr01g0022551' => 'lal', 'Lalb_Chr03g0042341' => 'lal', 'Lalb_Chr07g0192931' => 'lal', 'Lalb_Chr12g0209551' => 'lal', 'Lalb_Chr19g0125251' => 'lal', 'Lalb_Chr19g0137891' => 'lal', 'Lalb_Chr21g0304641' => 'lal', 'Lalb_Chr21g0309881' => 'lal', 'Lj1A5T12' => 'lonja', 'Lj1C148G10' => 'lonja', 'Lj2A93T83' => 'lonja', 'Lj3A738G68' => 'lonja', 'Lj3C966T1' => 'lonja', 'Lj3g0018958' => 'lja', 'Lj3g0021831' => 'lja', 'Lj3g0025443' => 'lja', 'Lj4g0026809' => 'lja', 'Lj5g0012558' => 'lja', 'Lj5g0021586' => 'lja', 'Lsat_1_v5_gn_5_156840' => 'lsa', 'Lsat_1_v5_gn_8_73460' => 'lsa', 'Lsat_1_v5_gn_8_73481' => 'lsa', 'Lsat_1_v5_gn_9_31601' => 'lsa', 'Lsat_1_v5_gn_9_77320' => 'lsa', 'Manes.01G171300' => 'mes', 'Manes.01G171400' => 'mes', 'Manes.01G236100' => 'mes', 'Manes.02G130500' => 'mes', 'Manes.02G130600' => 'mes', 'Manes.03G180200' => 'mes', 'Manes.05G007000' => 'mes', 'Manes.08G084400' => 'mes', 'Manes.09G092600' => 'mes', 'Manes.15G027900' => 'mes', 'MBI04_g40948_MAGBIO' => 'mbi', 'MBI14_g12123_MAGBIO' => 'mbi', 'MBI18_g28915_MAGBIO' => 'mbi', 'MCO09G053' => 'mco', 'MCO11G782' => 'mco', 'MCO15G215' => 'mco', 'MD03G1088500' => 'mdo', 'MD03G1088600' => 'mdo', 'MD04G1130800' => 'mdo', 'MD09G1291700' => 'mdo', 'MD11G1097500' => 'mdo', 'MD11G1097600' => 'mdo', 'MD12G1143900' => 'mdo', 'MD13G1191400' => 'mdo', 'MD16G1191500' => 'mdo', 'Medtr1g085570' => 'mtr', 'Medtr1g104610' => 'mtr', 'Medtr2g097520' => 'mtr', 'Medtr4g021800' => 'mtr', 'Medtr4g021825' => 'mtr', 'Medtr4g064270' => 'mtr', 'Medtr4g064380' => 'mtr', 'Medtr7g062150' => 'mtr', 'MELO3C003138.2' => 'cme', 'MELO3C005187.2' => 'cme', 'MELO3C009252.2' => 'cme', 'MELO3C014481.2' => 'cme', 'MELO3C020616.2' => 'cme', 'MELO3C020617.2' => 'cme', 'MELO3C020618.2' => 'cme', 'Migut.G00328' => 'egut', 'Migut.J00320' => 'egut', 'Migut.L01000' => 'egut', 'Migut.L01953' => 'egut', 'MSTRG.10253' => 'ama', 'MSTRG.19077' => 'ama', 'MSTRG.26780' => 'ama', 'MSTRG.4023' => 'ama', 'MSTRG.5655' => 'ama', 'MSTRG.9992' => 'ama', 'Nitab4.5_0000043g0310' => 'nta', 'Nitab4.5_0000463g0080' => 'nta', 'Nitab4.5_0000705g0170' => 'nta', 'Nitab4.5_0001326g0060' => 'nta', 'Nitab4.5_0001628g0030' => 'nta', 'Nitab4.5_0002103g0110' => 'nta', 'Nitab4.5_0002946g0030' => 'nta', 'Nitab4.5_0004639g0030' => 'nta', 'Nn2g11149' => 'nnu', 'Nn2g13389' => 'nnu', 'Nn4g25326' => 'nnu', 'Nn4g26290' => 'nnu', 'Nn5g29865' => 'nnu', 'Oeu004163.1' => 'oeu', 'Oeu006901.1' => 'oeu', 'Oeu010096.1' => 'oeu', 'Oeu024340.1' => 'oeu', 'Oeu048369.1' => 'oeu', 'Os01g0973000' => 'osa', 'Os03g0273800' => 'osa', 'Os03g0701200' => 'osa', 'Os03g0834050' => 'osa', 'Os07g0634400' => 'osa', 'Peaxi162Scf00092g01414' => 'pax', 'Peaxi162Scf00165g00818' => 'pax', 'Peaxi162Scf00309g00516' => 'pax', 'Peaxi162Scf00774g00218' => 'pax', 'PGR004G1824' => 'pgr', 'PGR004G2606' => 'pgr', 'PGR031G2716' => 'pgr', 'PGR102G2460' => 'pgr', 'PGR142G2599' => 'pgr', 'PGSC0003DMG400000843' => 'stu', 'PGSC0003DMG400008829' => 'stu', 'PGSC0003DMG400030418' => 'stu', 'PGSC0003DMG400031834' => 'stu', 'PGSC0003DMG401028300' => 'stu', 'PGSC0003DMG402028300' => 'stu', 'Phvul.001G219300' => 'pvu', 'Phvul.007G056000' => 'pvu', 'Phvul.007G208000' => 'pvu', 'Phvul.008G119500' => 'pvu', 'Phvul.010G011200' => 'pvu', 'Phvul.010G014800' => 'pvu', 'Phvul.011G062900' => 'pvu', 'Phvul.L007043' => 'pvu', 'Potri.001G242300' => 'ptr', 'Potri.002G185300' => 'ptr', 'Potri.006G086900' => 'ptr', 'Potri.008G151700' => 'ptr', 'Potri.009G033500' => 'ptr', 'Potri.010G089300' => 'ptr', 'Potri.014G110800' => 'ptr', 'Pp3c27_8130' => 'ppa', 'Pp3c6_27410' => 'ppa', 'PRCOL_00001659' => 'pco', 'PRCOL_00001927' => 'pco', 'PRCOL_00003649' => 'pco', 'Prupe.1G011600' => 'ppe', 'Prupe.3G000800' => 'ppe', 'Prupe.3G001100' => 'ppe', 'Prupe.6G072700' => 'ppe', 'Prupe.6G072800' => 'ppe', 'Prupe.6G257300' => 'ppe', 'Prupe.8G033000' => 'ppe', 'Psat0s2633g0080' => 'psa', 'Psat0s3396g0080' => 'psa', 'Psat0s3396g0200' => 'psa', 'Psat3g139080' => 'psa', 'Psat5g285080' => 'psa', 'Psat6g157760' => 'psa', 'Psat6g208440' => 'psa', 'Psat7g215320' => 'psa', 'Psat7g215400' => 'psa', 'Psat7g235600' => 'psa', 'Psat7g235760' => 'psa', 'PSO063G4603' => 'pso', 'PSO210G0182' => 'pso', 'PSO210G0196' => 'pso', 'PSO339G0394' => 'pso', 'PSO339G4127' => 'pso', 'PSO513G0064' => 'pso', 'PSO761G0079' => 'pso', 'QL01p031003' => 'qlo', 'QL01p031078' => 'qlo', 'QL06p003004' => 'qlo', 'QL07p048731' => 'qlo', 'QL09p037427' => 'qlo', 'RcHm_v2.0_Chr3g0466361' => 'rch', 'RcHm_v2.0_Chr3g0485571' => 'rch', 'RcHm_v2.0_Chr4g0416551' => 'rch', 'RcHm_v2.0_Chr5g0065831' => 'rch', 'Rhsim01G0230500' => 'rsi', 'Rhsim05G0194000' => 'rsi', 'Rhsim08G0250400' => 'rsi', 'Sabra02G0131000' => 'sbr', 'Sabra06G0066300' => 'sbr', 'Sabra08G0115500' => 'sbr', 'Sabra09G0023900' => 'sbr', 'Sabra10G0054000' => 'sbr', 'Sabra14G0081500' => 'sbr', 'Sabra16G0147100' => 'sbr', 'SalBow2G2957' => 'sbo', 'SalBow4G3320' => 'sbo', 'SalBow8G1894' => 'sbo', 'Sc07g0007950' => 'sci', 'Sc12g0001360' => 'sci', 'Sc13g0004330' => 'sci', 'Sc20g0005010' => 'sci', 'Sed0000361' => 'sed', 'Sed0001706' => 'sed', 'Sed0002422' => 'sed', 'Sed0004029' => 'sed', 'Sed0004602' => 'sed', 'Sed0004943' => 'sed', 'Sed0008646' => 'sed', 'Sed0023313' => 'sed', 'Sed0024843' => 'sed', 'SEGI_00081' => 'sgi', 'SEGI_00947' => 'sgi', 'SEGI_04046' => 'sgi', 'SEGI_06880' => 'sgi', 'SEGI_09736' => 'sgi', 'SEGI_12741' => 'sgi', 'SEGI_14530' => 'sgi', 'SEGI_20705' => 'sgi', 'SEGI_26088' => 'sgi', 'SEGI_28323' => 'sgi', 'SEGI_33343' => 'sgi', 'SGA_v2.0_scaffold126G33775' => 'sas', 'SGA_v2.0_scaffold2G01337' => 'sas', 'SGA_v2.0_scaffold38G15006' => 'sas', 'SGA_v2.0_scaffold39G15264' => 'sas', 'SGA_v2.0_scaffold453G51880' => 'sas', 'SHI12696' => 'shi', 'SMO367G1096' => 'smo', 'Solyc01g068630.3' => 'sly', 'Solyc05g011880.3' => 'sly', 'Solyc06g076300.3' => 'sly', 'Solyc09g010940.4' => 'sly', 'Solyc09g075890.3' => 'sly', 'Sopen01g030560' => 'spe', 'Sopen05g006630' => 'spe', 'Sopen06g032720' => 'spe', 'Sopen09g005660' => 'spe', 'Sopen09g030690' => 'spe', 'Sp4g14540' => 'spa', 'Sp4g20030' => 'spa', 'Sp5g01320' => 'spa', 'Sp6g21170' => 'spa', 'Sp6g21180' => 'spa', 'Sp6g21190' => 'spa', 'Sp6g40220' => 'spa', 'TAR362G0122' => 'tar', 'TAR362G1338' => 'tar', 'TAR369G0590' => 'tar', 'TAR371G0824' => 'tar', 'TAR622G1429' => 'tar', 'TAR623G0734' => 'tar', 'TAR625G0441' => 'tar', 'TAR629G0976' => 'tar', 'TAR633G1195' => 'tar', 'TAR636G2660' => 'tar', 'THA.LOC104799440' => 'tha', 'THA.LOC104800966' => 'tha', 'THA.LOC104806559' => 'tha', 'THA.LOC104810765' => 'tha', 'THA.LOC104816266' => 'tha', 'THA.LOC104817419' => 'tha', 'THA.LOC104827021' => 'tha', 'Thecc.01G327400' => 'tca', 'Thecc.04G229200' => 'tca', 'Thecc.05G037400' => 'tca', 'Thecc.09G318600' => 'tca', 'Thecc.09G318700' => 'tca', 'Thhalv10006238m.g' => 'esa', 'Thhalv10014321m.g' => 'esa', 'Thhalv10014335m.g' => 'esa', 'Thhalv10015826m.g' => 'esa', 'Thhalv10017107m.g' => 'esa', 'Thhalv10017180m.g' => 'esa', 'Thhalv10029339m.g' => 'esa', 'TPR.G1699' => 'tpr', 'TPR.G23609' => 'tpr', 'TPR.G3081' => 'tpr', 'TPR.G40397' => 'tpr', 'TPR.G5522' => 'tpr', 'TPR.G5618' => 'tpr', 'TPR.G5626' => 'tpr', 'TWI09G1632' => 'twi', 'TWI23G1230' => 'twi', 'TWI53G1064' => 'twi', 'TWI59G0751' => 'twi', 'TWI74G0947' => 'twi', 'TWI77G0337' => 'twi', 'TWI79G1254' => 'twi', 'unitig_0.g2341' => 'ugi', 'unitig_26.g10006' => 'ugi', 'unitig_26.g10008' => 'ugi', 'unitig_26.g9192' => 'ugi', 'vmacro14547' => 'vma', 'vmacro15333' => 'vma', 'vmacro18743' => 'vma', 'vmacro20166' => 'vma', 'VMungo0331G0523' => 'vmu', 'VMungo0331G1202' => 'vmu', 'VMungo0720G1228' => 'vmu', 'VMungo0720G1514' => 'vmu', 'VMungo1080G0169' => 'vmu', 'VMungo1127G1475' => 'vmu', 'VMungo1383G1208' => 'vmu', 'VMungo1383G1698' => 'vmu', 'Zm00001eb012270' => 'zma', 'Zm00001eb054100' => 'zma', 'Zm00001eb063350' => 'zma', 'Zm00001eb328560' => 'zma', 'Zm00001eb342820' => 'zma', 'Zm00001eb362210' => 'zma', 'Zm00001eb397730' => 'zma', 'Zm00001eb399750' => 'zma' ), 'gf_id' => 'HOM05D000959', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000959' ), 'data_identifier' => 'HOM05D000959', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000959', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '622', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p07100' => 'bna', 'A03p11720' => 'bna', 'A05p08300' => 'bna', 'A05p13380' => 'bna', 'A09p54130' => 'bna', 'A10p16690' => 'bna', 'A10p16700' => 'bna', 'A10p33390' => 'bna', 'Aa31LG10G16020' => 'aar', 'Aa31LG1G11810' => 'aar', 'Aa31LG1G11830' => 'aar', 'Aa31LG1G22510' => 'aar', 'Aa31LG5G4890' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5793' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2310' => 'aag', 'Actinidia08499' => 'ach', 'Actinidia11262' => 'ach', 'Actinidia23926' => 'ach', 'Actinidia34420' => 'ach', 'Actinidia36970' => 'ach', 'Ah.02g111220' => 'amhyb', 'Ah.15g097750' => 'amhyb', 'AL4G27500' => 'aly', 'AL6G11470' => 'aly', 'AL8G35950' => 'aly', 'AL8G35960' => 'aly', 'AL8G35970' => 'aly', 'Aqoxy1G00912' => 'aox', 'Aqoxy2G02253' => 'aox', 'Aqoxy2G02411' => 'aox', 'Aqoxy5G00485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BZ66YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K8ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM4FUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6BF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HFV7XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25JBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0YNNV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MAKK6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P70IT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP2Z6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V61LZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YWP64R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3S9AI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7PGHH' => 'arhy', 'AT2G32150' => 'ath', 'AT3G62040' => 'ath', 'AT5G02230' => 'ath', 'AT5G59480' => 'ath', 'AT5G59490' => 'ath', 'ATR0332G060' => 'atr', 'ATR0559G190' => 'atr', 'ATR0693G294' => 'atr', 'Atru.chr3.3975' => 'acertr', 'Atru.chr3.3976' => 'acertr', 'Atru.chr3.3977' => 'acertr', 'Atru.chr4.2498' => 'acertr', 'Atru.chr5.838' => 'acertr', 'Atru.chr8.1990' => 'acertr', 'Atru.chr8.1991' => 'acertr', 'Atru.chr8.1992' => 'acertr', 'AUR62001759' => 'cqu', 'AUR62009545' => 'cqu', 'AUR62010474' => 'cqu', 'AUR62025820' => 'cqu', 'AUR62030422' => 'cqu', 'AUR62033605' => 'cqu', 'AUR62038615' => 'cqu', 'AUR62041347' => 'cqu', 'BcaB01g04574' => 'bca', 'BcaB02g09263' => 'bca', 'BcaB02g10453' => 'bca', 'BcaB05g22513' => 'bca', 'BcaB08g36253' => 'bca', 'BcaB08g36254' => 'bca', 'BcaC01g06519' => 'bca', 'BcaC02g11889' => 'bca', 'BcaC03g14010' => 'bca', 'BcaC03g18439' => 'bca', 'BcaC04g19765' => 'bca', 'BcaC09g48432' => 'bca', 'BcaNung07302' => 'bca', 'BolC2t06040H' => 'bol', 'BolC2t07346H' => 'bol', 'BolC3t13817H' => 'bol', 'BolC4t22625H' => 'bol', 'BolC4t23297H' => 'bol', 'BolC8t51278H' => 'bol', 'BolC9t58050H' => 'bol', 'BolC9t58051H' => 'bol', 'BolC9t60163H' => 'bol', 'BraA02t04712Z' => 'bra', 'BraA02t05791Z' => 'bra', 'BraA03t10483Z' => 'bra', 'BraA05t19795Z' => 'bra', 'BraA05t20276Z' => 'bra', 'BraA09t40827Z' => 'bra', 'BraA10t43750Z' => 'bra', 'BraA10t43751Z' => 'bra', 'BraA10t45370Z' => 'bra', 'C02p00400' => 'bna', 'C02p12460' => 'bna', 'C03p13680' => 'bna', 'C04p10270' => 'bna', 'C04p17500' => 'bna', 'C08p37010' => 'bna', 'C09p51880' => 'bna', 'C09p51890' => 'bna', 'C09p74300' => 'bna', 'CAN.G179.26' => 'can', 'CAN.G3384.1' => 'can', 'CAN.G394.68' => 'can', 'CAN.G907.13' => 'can', 'CANSAT11G0012' => 'cansat', 'CANSAT25G1586' => 'cansat', 'CANSAT35G0735' => 'cansat', 'CANSAT54G0556' => 'cansat', 'CANSAT64G0356' => 'cansat', 'CANSAT78G2042' => 'cansat', 'CARHR125920' => 'chi', 'CARHR131910' => 'chi', 'CARHR172390' => 'chi', 'CARHR211140' => 'chi', 'CARHR285850' => 'chi', 'CARHR285860' => 'chi', 'Carub.0004s1347' => 'cru', 'Carub.0004s1960' => 'cru', 'Carub.0005s2880' => 'cru', 'Carub.0006s0107' => 'cru', 'Carub.0008s2015' => 'cru', 'Carub.0008s2016' => 'cru', 'Carub.0008s2017' => 'cru', 'Ca_01315_v3' => 'car', 'Ca_05063_v3' => 'car', 'Ca_10231_v3' => 'car', 'Ca_10913_v3' => 'car', 'Ca_19156_v3' => 'car', 'Ca_23644_v3' => 'car', 'Ca_26735_v3' => 'car', 'Cc01_g13130' => 'ccan', 'Cc02_g21690' => 'ccan', 'Cc03_g03600' => 'ccan', 'Cc06_g02510' => 'ccan', 'CDE02G1265' => 'cde', 'CDE05G0415' => 'cde', 'CDE08G1082' => 'cde', 'Cfa005780' => 'cfa', 'Cfa011522' => 'cfa', 'Cfa011523' => 'cfa', 'Cfa015627' => 'cfa', 'Cfa017359' => 'cfa', 'Ciclev10005687m.g' => 'ccl', 'Ciclev10012173m.g' => 'ccl', 'Ciclev10021621m.g' => 'ccl', 'Ciclev10028968m.g' => 'ccl', 'Ciclev10029907m.g' => 'ccl', 'CiPaw.01G164800' => 'cil', 'CiPaw.07G083700' => 'cil', 'CiPaw.07G127000' => 'cil', 'CiPaw.07G136900' => 'cil', 'CiPaw.08G081700' => 'cil', 'CiPaw.09G194600' => 'cil', 'CiPaw.10G146500' => 'cil', 'CiPaw.13G091500' => 'cil', 'CiPaw.13G091600' => 'cil', 'ClCG00G003390' => 'cla', 'ClCG01G007220' => 'cla', 'ClCG03G001370' => 'cla', 'ClCG04G008100' => 'cla', 'ClCG06G006110' => 'cla', 'ClCG06G006130' => 'cla', 'ClCG10G021210' => 'cla', 'COL.COLO4_07648' => 'col', 'COL.COLO4_07650' => 'col', 'COL.COLO4_07651' => 'col', 'COL.COLO4_14780' => 'col', 'COL.COLO4_18546' => 'col', 'COL.COLO4_18547' => 'col', 'COL.COLO4_23103' => 'col', 'COL.COLO4_30419' => 'col', 'COL.COLO4_34232' => 'col', 'Cpa.g.sc169.20' => 'cpa', 'Cpa.g.sc57.45' => 'cpa', 'Cpa.g.sc58.124' => 'cpa', 'Cpa.g.sc58.125' => 'cpa', 'Cpa.g.sc81.118' => 'cpa', 'Cpa.g.sc81.119' => 'cpa', 'Cre12.g524700' => 'cre', 'CsaV3_1G034430' => 'csa', 'CsaV3_1G034440' => 'csa', 'CsaV3_1G034450' => 'csa', 'CsaV3_3G034830' => 'csa', 'CsaV3_4G025090' => 'csa', 'CsaV3_5G018660' => 'csa', 'CsaV3_6G038160' => 'csa', 'CSS0003447' => 'camsi', 'CSS0017840' => 'camsi', 'CSS0019260' => 'camsi', 'CSS0040375' => 'camsi', 'CSS0042533' => 'camsi', 'DCAR_005960' => 'dca', 'DCAR_012104' => 'dca', 'DCAR_012105' => 'dca', 'DCAR_012293' => 'dca', 'DCAR_015632' => 'dca', 'DCAR_024602' => 'dca', 'DCAR_028752' => 'dca', 'Dinv06261' => 'din', 'Dinv13982' => 'din', 'Dinv17029' => 'din', 'Dinv18463' => 'din', 'Dinv33181' => 'din', 'Dinv35585' => 'din', 'Dinv37161' => 'din', 'Dinv42977' => 'din', 'Dinv43122' => 'din', 'Dinv44517' => 'din', 'Duzib093G0256' => 'dzi', 'Duzib106G1254' => 'dzi', 'Duzib128G1789' => 'dzi', 'Duzib133G0633' => 'dzi', 'Duzib138G0510' => 'dzi', 'Duzib150G1084' => 'dzi', 'Duzib168G0488' => 'dzi', 'Duzib168G1523' => 'dzi', 'Duzib170G0133' => 'dzi', 'ECA234G1433' => 'eca', 'ECA236G1432' => 'eca', 'ECA236G2256' => 'eca', 'ECA236G2365' => 'eca', 'ECA236G4830' => 'eca', 'ECA248G1505' => 'eca', 'EL10Ac3g06431' => 'bvu', 'EL10Ac5g12577' => 'bvu', 'EL10Ac6g13533' => 'bvu', 'EL10Ac7g16045' => 'bvu', 'Eucgr.A01281' => 'egr', 'Eucgr.B02326' => 'egr', 'Eucgr.H03532' => 'egr', 'Eucgr.K00553' => 'egr', 'Eucgr.K03116' => 'egr', 'FAN02G3963' => 'fan', 'FAN05G0438' => 'fan', 'FAN09G2434' => 'fan', 'FAN12G3984' => 'fan', 'FAN14G0798' => 'fan', 'FAN17G0652' => 'fan', 'FAN19G1988' => 'fan', 'FAN22G0632' => 'fan', 'FAN23G0387' => 'fan', 'FAN26G1323' => 'fan', 'FAN28G0666' => 'fan', 'FvH4_1g26080' => 'fve', 'FvH4_3g36780' => 'fve', 'FvH4_4g15270' => 'fve', 'FvH4_6g13490' => 'fve', 'Glyma.01G098700' => 'gma', 'Glyma.03G065900' => 'gma', 'Glyma.03G073754' => 'gma', 'Glyma.03G073758' => 'gma', 'Glyma.03G083200' => 'gma', 'Glyma.03G225500' => 'gma', 'Glyma.05G037766' => 'gma', 'Glyma.07G133500' => 'gma', 'Glyma.10G139400' => 'gma', 'Glyma.10G248900' => 'gma', 'Glyma.11G137800' => 'gma', 'Glyma.12G061300' => 'gma', 'Glyma.13G337900' => 'gma', 'Glyma.15G036600' => 'gma', 'Glyma.18G182800' => 'gma', 'Glyma.19G222500' => 'gma', 'Glyma.20G144800' => 'gma', 'Gohir.A01G222000' => 'ghi', 'Gohir.A03G044000' => 'ghi', 'Gohir.A03G044100' => 'ghi', 'Gohir.A04G083100' => 'ghi', 'Gohir.A07G127200' => 'ghi', 'Gohir.A07G132400' => 'ghi', 'Gohir.A08G000700' => 'ghi', 'Gohir.A11G327300' => 'ghi', 'Gohir.D01G211500' => 'ghi', 'Gohir.D03G123400' => 'ghi', 'Gohir.D03G123500' => 'ghi', 'Gohir.D04G121800' => 'ghi', 'Gohir.D07G131500' => 'ghi', 'Gohir.D07G136600' => 'ghi', 'Gohir.D08G011600' => 'ghi', 'Gohir.D11G346200' => 'ghi', 'Gorai.001G142800' => 'gra', 'Gorai.001G148700' => 'gra', 'Gorai.002G257300' => 'gra', 'Gorai.003G130000' => 'gra', 'Gorai.003G130100' => 'gra', 'Gorai.004G005300' => 'gra', 'Gorai.007G376500' => 'gra', 'Gorai.012G104700' => 'gra', 'GSVIVG01017946001' => 'vvi', 'GSVIVG01024928001' => 'vvi', 'GSVIVG01028227001' => 'vvi', 'GSVIVG01034151001' => 'vvi', 'HanXRQChr05g0135031' => 'han', 'HanXRQChr05g0135041' => 'han', 'HanXRQChr05g0140021' => 'han', 'HanXRQChr06g0178981' => 'han', 'HanXRQChr07g0188251' => 'han', 'HanXRQChr08g0235311' => 'han', 'HanXRQChr09g0271011' => 'han', 'HanXRQChr10g0293321' => 'han', 'HanXRQChr13g0388171' => 'han', 'Haze_00916' => 'cav', 'Haze_05063' => 'cav', 'Haze_20814' => 'cav', 'Haze_24128' => 'cav', 'Hma1.2p1_0745F.1_g212010' => 'hma', 'Hma1.2p1_0757F.1_g213260' => 'hma', 'Hma1.2p1_0936F.1_g238840' => 'hma', 'Hma1.2p1_1735F.1_g299890' => 'hma', 'Hma1.2p1_1861F.1_g305685' => 'hma', 'HPP92_003397' => 'vpl', 'HPP92_012597' => 'vpl', 'HPP92_015520' => 'vpl', 'HPP92_015539' => 'vpl', 'HPP92_020373' => 'vpl', 'Hund04938' => 'sun', 'Hund10677' => 'sun', 'Hund11033' => 'sun', 'Hund12155' => 'sun', 'Lalb_Chr01g0022551' => 'lal', 'Lalb_Chr03g0042341' => 'lal', 'Lalb_Chr07g0192931' => 'lal', 'Lalb_Chr12g0209551' => 'lal', 'Lalb_Chr19g0125251' => 'lal', 'Lalb_Chr19g0137891' => 'lal', 'Lalb_Chr21g0304641' => 'lal', 'Lalb_Chr21g0309881' => 'lal', 'Lj1A5T12' => 'lonja', 'Lj1C148G10' => 'lonja', 'Lj2A93T83' => 'lonja', 'Lj3A738G68' => 'lonja', 'Lj3C966T1' => 'lonja', 'Lj3g0018958' => 'lja', 'Lj3g0021831' => 'lja', 'Lj3g0025443' => 'lja', 'Lj4g0026809' => 'lja', 'Lj5g0012558' => 'lja', 'Lj5g0021586' => 'lja', 'Lsat_1_v5_gn_5_156840' => 'lsa', 'Lsat_1_v5_gn_8_73460' => 'lsa', 'Lsat_1_v5_gn_8_73481' => 'lsa', 'Lsat_1_v5_gn_9_31601' => 'lsa', 'Lsat_1_v5_gn_9_77320' => 'lsa', 'Manes.01G171300' => 'mes', 'Manes.01G171400' => 'mes', 'Manes.01G236100' => 'mes', 'Manes.02G130500' => 'mes', 'Manes.02G130600' => 'mes', 'Manes.03G180200' => 'mes', 'Manes.05G007000' => 'mes', 'Manes.08G084400' => 'mes', 'Manes.09G092600' => 'mes', 'Manes.15G027900' => 'mes', 'MBI04_g40948_MAGBIO' => 'mbi', 'MBI14_g12123_MAGBIO' => 'mbi', 'MBI18_g28915_MAGBIO' => 'mbi', 'MCO09G053' => 'mco', 'MCO11G782' => 'mco', 'MCO15G215' => 'mco', 'MD03G1088500' => 'mdo', 'MD03G1088600' => 'mdo', 'MD04G1130800' => 'mdo', 'MD09G1291700' => 'mdo', 'MD11G1097500' => 'mdo', 'MD11G1097600' => 'mdo', 'MD12G1143900' => 'mdo', 'MD13G1191400' => 'mdo', 'MD16G1191500' => 'mdo', 'Medtr1g085570' => 'mtr', 'Medtr1g104610' => 'mtr', 'Medtr2g097520' => 'mtr', 'Medtr4g021800' => 'mtr', 'Medtr4g021825' => 'mtr', 'Medtr4g064270' => 'mtr', 'Medtr4g064380' => 'mtr', 'Medtr7g062150' => 'mtr', 'MELO3C003138.2' => 'cme', 'MELO3C005187.2' => 'cme', 'MELO3C009252.2' => 'cme', 'MELO3C014481.2' => 'cme', 'MELO3C020616.2' => 'cme', 'MELO3C020617.2' => 'cme', 'MELO3C020618.2' => 'cme', 'Migut.G00328' => 'egut', 'Migut.J00320' => 'egut', 'Migut.L01000' => 'egut', 'Migut.L01953' => 'egut', 'MSTRG.10253' => 'ama', 'MSTRG.19077' => 'ama', 'MSTRG.26780' => 'ama', 'MSTRG.4023' => 'ama', 'MSTRG.5655' => 'ama', 'MSTRG.9992' => 'ama', 'Nitab4.5_0000043g0310' => 'nta', 'Nitab4.5_0000463g0080' => 'nta', 'Nitab4.5_0000705g0170' => 'nta', 'Nitab4.5_0001326g0060' => 'nta', 'Nitab4.5_0001628g0030' => 'nta', 'Nitab4.5_0002103g0110' => 'nta', 'Nitab4.5_0002946g0030' => 'nta', 'Nitab4.5_0004639g0030' => 'nta', 'Nn2g11149' => 'nnu', 'Nn2g13389' => 'nnu', 'Nn4g25326' => 'nnu', 'Nn4g26290' => 'nnu', 'Nn5g29865' => 'nnu', 'Oeu004163.1' => 'oeu', 'Oeu006901.1' => 'oeu', 'Oeu010096.1' => 'oeu', 'Oeu024340.1' => 'oeu', 'Oeu048369.1' => 'oeu', 'Os01g0973000' => 'osa', 'Os03g0273800' => 'osa', 'Os03g0701200' => 'osa', 'Os03g0834050' => 'osa', 'Os07g0634400' => 'osa', 'Peaxi162Scf00092g01414' => 'pax', 'Peaxi162Scf00165g00818' => 'pax', 'Peaxi162Scf00309g00516' => 'pax', 'Peaxi162Scf00774g00218' => 'pax', 'PGR004G1824' => 'pgr', 'PGR004G2606' => 'pgr', 'PGR031G2716' => 'pgr', 'PGR102G2460' => 'pgr', 'PGR142G2599' => 'pgr', 'PGSC0003DMG400000843' => 'stu', 'PGSC0003DMG400008829' => 'stu', 'PGSC0003DMG400030418' => 'stu', 'PGSC0003DMG400031834' => 'stu', 'PGSC0003DMG401028300' => 'stu', 'PGSC0003DMG402028300' => 'stu', 'Phvul.001G219300' => 'pvu', 'Phvul.007G056000' => 'pvu', 'Phvul.007G208000' => 'pvu', 'Phvul.008G119500' => 'pvu', 'Phvul.010G011200' => 'pvu', 'Phvul.010G014800' => 'pvu', 'Phvul.011G062900' => 'pvu', 'Phvul.L007043' => 'pvu', 'Potri.001G242300' => 'ptr', 'Potri.002G185300' => 'ptr', 'Potri.006G086900' => 'ptr', 'Potri.008G151700' => 'ptr', 'Potri.009G033500' => 'ptr', 'Potri.010G089300' => 'ptr', 'Potri.014G110800' => 'ptr', 'Pp3c27_8130' => 'ppa', 'Pp3c6_27410' => 'ppa', 'PRCOL_00001659' => 'pco', 'PRCOL_00001927' => 'pco', 'PRCOL_00003649' => 'pco', 'Prupe.1G011600' => 'ppe', 'Prupe.3G000800' => 'ppe', 'Prupe.3G001100' => 'ppe', 'Prupe.6G072700' => 'ppe', 'Prupe.6G072800' => 'ppe', 'Prupe.6G257300' => 'ppe', 'Prupe.8G033000' => 'ppe', 'Psat0s2633g0080' => 'psa', 'Psat0s3396g0080' => 'psa', 'Psat0s3396g0200' => 'psa', 'Psat3g139080' => 'psa', 'Psat5g285080' => 'psa', 'Psat6g157760' => 'psa', 'Psat6g208440' => 'psa', 'Psat7g215320' => 'psa', 'Psat7g215400' => 'psa', 'Psat7g235600' => 'psa', 'Psat7g235760' => 'psa', 'PSO063G4603' => 'pso', 'PSO210G0182' => 'pso', 'PSO210G0196' => 'pso', 'PSO339G0394' => 'pso', 'PSO339G4127' => 'pso', 'PSO513G0064' => 'pso', 'PSO761G0079' => 'pso', 'QL01p031003' => 'qlo', 'QL01p031078' => 'qlo', 'QL06p003004' => 'qlo', 'QL07p048731' => 'qlo', 'QL09p037427' => 'qlo', 'RcHm_v2.0_Chr3g0466361' => 'rch', 'RcHm_v2.0_Chr3g0485571' => 'rch', 'RcHm_v2.0_Chr4g0416551' => 'rch', 'RcHm_v2.0_Chr5g0065831' => 'rch', 'Rhsim01G0230500' => 'rsi', 'Rhsim05G0194000' => 'rsi', 'Rhsim08G0250400' => 'rsi', 'Sabra02G0131000' => 'sbr', 'Sabra06G0066300' => 'sbr', 'Sabra08G0115500' => 'sbr', 'Sabra09G0023900' => 'sbr', 'Sabra10G0054000' => 'sbr', 'Sabra14G0081500' => 'sbr', 'Sabra16G0147100' => 'sbr', 'SalBow2G2957' => 'sbo', 'SalBow4G3320' => 'sbo', 'SalBow8G1894' => 'sbo', 'Sc07g0007950' => 'sci', 'Sc12g0001360' => 'sci', 'Sc13g0004330' => 'sci', 'Sc20g0005010' => 'sci', 'Sed0000361' => 'sed', 'Sed0001706' => 'sed', 'Sed0002422' => 'sed', 'Sed0004029' => 'sed', 'Sed0004602' => 'sed', 'Sed0004943' => 'sed', 'Sed0008646' => 'sed', 'Sed0023313' => 'sed', 'Sed0024843' => 'sed', 'SEGI_00081' => 'sgi', 'SEGI_00947' => 'sgi', 'SEGI_04046' => 'sgi', 'SEGI_06880' => 'sgi', 'SEGI_09736' => 'sgi', 'SEGI_12741' => 'sgi', 'SEGI_14530' => 'sgi', 'SEGI_20705' => 'sgi', 'SEGI_26088' => 'sgi', 'SEGI_28323' => 'sgi', 'SEGI_33343' => 'sgi', 'SGA_v2.0_scaffold126G33775' => 'sas', 'SGA_v2.0_scaffold2G01337' => 'sas', 'SGA_v2.0_scaffold38G15006' => 'sas', 'SGA_v2.0_scaffold39G15264' => 'sas', 'SGA_v2.0_scaffold453G51880' => 'sas', 'SHI12696' => 'shi', 'SMO367G1096' => 'smo', 'Solyc01g068630.3' => 'sly', 'Solyc05g011880.3' => 'sly', 'Solyc06g076300.3' => 'sly', 'Solyc09g010940.4' => 'sly', 'Solyc09g075890.3' => 'sly', 'Sopen01g030560' => 'spe', 'Sopen05g006630' => 'spe', 'Sopen06g032720' => 'spe', 'Sopen09g005660' => 'spe', 'Sopen09g030690' => 'spe', 'Sp4g14540' => 'spa', 'Sp4g20030' => 'spa', 'Sp5g01320' => 'spa', 'Sp6g21170' => 'spa', 'Sp6g21180' => 'spa', 'Sp6g21190' => 'spa', 'Sp6g40220' => 'spa', 'TAR362G0122' => 'tar', 'TAR362G1338' => 'tar', 'TAR369G0590' => 'tar', 'TAR371G0824' => 'tar', 'TAR622G1429' => 'tar', 'TAR623G0734' => 'tar', 'TAR625G0441' => 'tar', 'TAR629G0976' => 'tar', 'TAR633G1195' => 'tar', 'TAR636G2660' => 'tar', 'THA.LOC104799440' => 'tha', 'THA.LOC104800966' => 'tha', 'THA.LOC104806559' => 'tha', 'THA.LOC104810765' => 'tha', 'THA.LOC104816266' => 'tha', 'THA.LOC104817419' => 'tha', 'THA.LOC104827021' => 'tha', 'Thecc.01G327400' => 'tca', 'Thecc.04G229200' => 'tca', 'Thecc.05G037400' => 'tca', 'Thecc.09G318600' => 'tca', 'Thecc.09G318700' => 'tca', 'Thhalv10006238m.g' => 'esa', 'Thhalv10014321m.g' => 'esa', 'Thhalv10014335m.g' => 'esa', 'Thhalv10015826m.g' => 'esa', 'Thhalv10017107m.g' => 'esa', 'Thhalv10017180m.g' => 'esa', 'Thhalv10029339m.g' => 'esa', 'TPR.G1699' => 'tpr', 'TPR.G23609' => 'tpr', 'TPR.G3081' => 'tpr', 'TPR.G40397' => 'tpr', 'TPR.G5522' => 'tpr', 'TPR.G5618' => 'tpr', 'TPR.G5626' => 'tpr', 'TWI09G1632' => 'twi', 'TWI23G1230' => 'twi', 'TWI53G1064' => 'twi', 'TWI59G0751' => 'twi', 'TWI74G0947' => 'twi', 'TWI77G0337' => 'twi', 'TWI79G1254' => 'twi', 'unitig_0.g2341' => 'ugi', 'unitig_26.g10006' => 'ugi', 'unitig_26.g10008' => 'ugi', 'unitig_26.g9192' => 'ugi', 'vmacro14547' => 'vma', 'vmacro15333' => 'vma', 'vmacro18743' => 'vma', 'vmacro20166' => 'vma', 'VMungo0331G0523' => 'vmu', 'VMungo0331G1202' => 'vmu', 'VMungo0720G1228' => 'vmu', 'VMungo0720G1514' => 'vmu', 'VMungo1080G0169' => 'vmu', 'VMungo1127G1475' => 'vmu', 'VMungo1383G1208' => 'vmu', 'VMungo1383G1698' => 'vmu', 'Zm00001eb012270' => 'zma', 'Zm00001eb054100' => 'zma', 'Zm00001eb063350' => 'zma', 'Zm00001eb328560' => 'zma', 'Zm00001eb342820' => 'zma', 'Zm00001eb362210' => 'zma', 'Zm00001eb397730' => 'zma', 'Zm00001eb399750' => 'zma' ) $gf_id = 'HOM05D000959' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000959' ) $data_identifier = 'HOM05D000959' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 5, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 5, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 10, 'mbi' => (int) 3, 'mco' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 2, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 3, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 11, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399750' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000959', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '622', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p07100' => 'bna', 'A03p11720' => 'bna', 'A05p08300' => 'bna', 'A05p13380' => 'bna', 'A09p54130' => 'bna', 'A10p16690' => 'bna', 'A10p16700' => 'bna', 'A10p33390' => 'bna', 'Aa31LG10G16020' => 'aar', 'Aa31LG1G11810' => 'aar', 'Aa31LG1G11830' => 'aar', 'Aa31LG1G22510' => 'aar', 'Aa31LG5G4890' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5793' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2310' => 'aag', 'Actinidia08499' => 'ach', 'Actinidia11262' => 'ach', 'Actinidia23926' => 'ach', 'Actinidia34420' => 'ach', 'Actinidia36970' => 'ach', 'Ah.02g111220' => 'amhyb', 'Ah.15g097750' => 'amhyb', 'AL4G27500' => 'aly', 'AL6G11470' => 'aly', 'AL8G35950' => 'aly', 'AL8G35960' => 'aly', 'AL8G35970' => 'aly', 'Aqoxy1G00912' => 'aox', 'Aqoxy2G02253' => 'aox', 'Aqoxy2G02411' => 'aox', 'Aqoxy5G00485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BZ66YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K8ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM4FUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6BF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HFV7XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25JBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0YNNV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MAKK6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P70IT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP2Z6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V61LZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YWP64R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3S9AI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7PGHH' => 'arhy', 'AT2G32150' => 'ath', 'AT3G62040' => 'ath', 'AT5G02230' => 'ath', 'AT5G59480' => 'ath', 'AT5G59490' => 'ath', 'ATR0332G060' => 'atr', 'ATR0559G190' => 'atr', 'ATR0693G294' => 'atr', 'Atru.chr3.3975' => 'acertr', 'Atru.chr3.3976' => 'acertr', 'Atru.chr3.3977' => 'acertr', 'Atru.chr4.2498' => 'acertr', 'Atru.chr5.838' => 'acertr', 'Atru.chr8.1990' => 'acertr', 'Atru.chr8.1991' => 'acertr', 'Atru.chr8.1992' => 'acertr', 'AUR62001759' => 'cqu', 'AUR62009545' => 'cqu', 'AUR62010474' => 'cqu', 'AUR62025820' => 'cqu', 'AUR62030422' => 'cqu', 'AUR62033605' => 'cqu', 'AUR62038615' => 'cqu', 'AUR62041347' => 'cqu', 'BcaB01g04574' => 'bca', 'BcaB02g09263' => 'bca', 'BcaB02g10453' => 'bca', 'BcaB05g22513' => 'bca', 'BcaB08g36253' => 'bca', 'BcaB08g36254' => 'bca', 'BcaC01g06519' => 'bca', 'BcaC02g11889' => 'bca', 'BcaC03g14010' => 'bca', 'BcaC03g18439' => 'bca', 'BcaC04g19765' => 'bca', 'BcaC09g48432' => 'bca', 'BcaNung07302' => 'bca', 'BolC2t06040H' => 'bol', 'BolC2t07346H' => 'bol', 'BolC3t13817H' => 'bol', 'BolC4t22625H' => 'bol', 'BolC4t23297H' => 'bol', 'BolC8t51278H' => 'bol', 'BolC9t58050H' => 'bol', 'BolC9t58051H' => 'bol', 'BolC9t60163H' => 'bol', 'BraA02t04712Z' => 'bra', 'BraA02t05791Z' => 'bra', 'BraA03t10483Z' => 'bra', 'BraA05t19795Z' => 'bra', 'BraA05t20276Z' => 'bra', 'BraA09t40827Z' => 'bra', 'BraA10t43750Z' => 'bra', 'BraA10t43751Z' => 'bra', 'BraA10t45370Z' => 'bra', 'C02p00400' => 'bna', 'C02p12460' => 'bna', 'C03p13680' => 'bna', 'C04p10270' => 'bna', 'C04p17500' => 'bna', 'C08p37010' => 'bna', 'C09p51880' => 'bna', 'C09p51890' => 'bna', 'C09p74300' => 'bna', 'CAN.G179.26' => 'can', 'CAN.G3384.1' => 'can', 'CAN.G394.68' => 'can', 'CAN.G907.13' => 'can', 'CANSAT11G0012' => 'cansat', 'CANSAT25G1586' => 'cansat', 'CANSAT35G0735' => 'cansat', 'CANSAT54G0556' => 'cansat', 'CANSAT64G0356' => 'cansat', 'CANSAT78G2042' => 'cansat', 'CARHR125920' => 'chi', 'CARHR131910' => 'chi', 'CARHR172390' => 'chi', 'CARHR211140' => 'chi', 'CARHR285850' => 'chi', 'CARHR285860' => 'chi', 'Carub.0004s1347' => 'cru', 'Carub.0004s1960' => 'cru', 'Carub.0005s2880' => 'cru', 'Carub.0006s0107' => 'cru', 'Carub.0008s2015' => 'cru', 'Carub.0008s2016' => 'cru', 'Carub.0008s2017' => 'cru', 'Ca_01315_v3' => 'car', 'Ca_05063_v3' => 'car', 'Ca_10231_v3' => 'car', 'Ca_10913_v3' => 'car', 'Ca_19156_v3' => 'car', 'Ca_23644_v3' => 'car', 'Ca_26735_v3' => 'car', 'Cc01_g13130' => 'ccan', 'Cc02_g21690' => 'ccan', 'Cc03_g03600' => 'ccan', 'Cc06_g02510' => 'ccan', 'CDE02G1265' => 'cde', 'CDE05G0415' => 'cde', 'CDE08G1082' => 'cde', 'Cfa005780' => 'cfa', 'Cfa011522' => 'cfa', 'Cfa011523' => 'cfa', 'Cfa015627' => 'cfa', 'Cfa017359' => 'cfa', 'Ciclev10005687m.g' => 'ccl', 'Ciclev10012173m.g' => 'ccl', 'Ciclev10021621m.g' => 'ccl', 'Ciclev10028968m.g' => 'ccl', 'Ciclev10029907m.g' => 'ccl', 'CiPaw.01G164800' => 'cil', 'CiPaw.07G083700' => 'cil', 'CiPaw.07G127000' => 'cil', 'CiPaw.07G136900' => 'cil', 'CiPaw.08G081700' => 'cil', 'CiPaw.09G194600' => 'cil', 'CiPaw.10G146500' => 'cil', 'CiPaw.13G091500' => 'cil', 'CiPaw.13G091600' => 'cil', 'ClCG00G003390' => 'cla', 'ClCG01G007220' => 'cla', 'ClCG03G001370' => 'cla', 'ClCG04G008100' => 'cla', 'ClCG06G006110' => 'cla', 'ClCG06G006130' => 'cla', 'ClCG10G021210' => 'cla', 'COL.COLO4_07648' => 'col', 'COL.COLO4_07650' => 'col', 'COL.COLO4_07651' => 'col', 'COL.COLO4_14780' => 'col', 'COL.COLO4_18546' => 'col', 'COL.COLO4_18547' => 'col', 'COL.COLO4_23103' => 'col', 'COL.COLO4_30419' => 'col', 'COL.COLO4_34232' => 'col', 'Cpa.g.sc169.20' => 'cpa', 'Cpa.g.sc57.45' => 'cpa', 'Cpa.g.sc58.124' => 'cpa', 'Cpa.g.sc58.125' => 'cpa', 'Cpa.g.sc81.118' => 'cpa', 'Cpa.g.sc81.119' => 'cpa', 'Cre12.g524700' => 'cre', 'CsaV3_1G034430' => 'csa', 'CsaV3_1G034440' => 'csa', 'CsaV3_1G034450' => 'csa', 'CsaV3_3G034830' => 'csa', 'CsaV3_4G025090' => 'csa', 'CsaV3_5G018660' => 'csa', 'CsaV3_6G038160' => 'csa', 'CSS0003447' => 'camsi', 'CSS0017840' => 'camsi', 'CSS0019260' => 'camsi', 'CSS0040375' => 'camsi', 'CSS0042533' => 'camsi', 'DCAR_005960' => 'dca', 'DCAR_012104' => 'dca', 'DCAR_012105' => 'dca', 'DCAR_012293' => 'dca', 'DCAR_015632' => 'dca', 'DCAR_024602' => 'dca', 'DCAR_028752' => 'dca', 'Dinv06261' => 'din', 'Dinv13982' => 'din', 'Dinv17029' => 'din', 'Dinv18463' => 'din', 'Dinv33181' => 'din', 'Dinv35585' => 'din', 'Dinv37161' => 'din', 'Dinv42977' => 'din', 'Dinv43122' => 'din', 'Dinv44517' => 'din', 'Duzib093G0256' => 'dzi', 'Duzib106G1254' => 'dzi', 'Duzib128G1789' => 'dzi', 'Duzib133G0633' => 'dzi', 'Duzib138G0510' => 'dzi', 'Duzib150G1084' => 'dzi', 'Duzib168G0488' => 'dzi', 'Duzib168G1523' => 'dzi', 'Duzib170G0133' => 'dzi', 'ECA234G1433' => 'eca', 'ECA236G1432' => 'eca', 'ECA236G2256' => 'eca', 'ECA236G2365' => 'eca', 'ECA236G4830' => 'eca', 'ECA248G1505' => 'eca', 'EL10Ac3g06431' => 'bvu', 'EL10Ac5g12577' => 'bvu', 'EL10Ac6g13533' => 'bvu', 'EL10Ac7g16045' => 'bvu', 'Eucgr.A01281' => 'egr', 'Eucgr.B02326' => 'egr', 'Eucgr.H03532' => 'egr', 'Eucgr.K00553' => 'egr', 'Eucgr.K03116' => 'egr', 'FAN02G3963' => 'fan', 'FAN05G0438' => 'fan', 'FAN09G2434' => 'fan', 'FAN12G3984' => 'fan', 'FAN14G0798' => 'fan', 'FAN17G0652' => 'fan', 'FAN19G1988' => 'fan', 'FAN22G0632' => 'fan', 'FAN23G0387' => 'fan', 'FAN26G1323' => 'fan', 'FAN28G0666' => 'fan', 'FvH4_1g26080' => 'fve', 'FvH4_3g36780' => 'fve', 'FvH4_4g15270' => 'fve', 'FvH4_6g13490' => 'fve', 'Glyma.01G098700' => 'gma', 'Glyma.03G065900' => 'gma', 'Glyma.03G073754' => 'gma', 'Glyma.03G073758' => 'gma', 'Glyma.03G083200' => 'gma', 'Glyma.03G225500' => 'gma', 'Glyma.05G037766' => 'gma', 'Glyma.07G133500' => 'gma', 'Glyma.10G139400' => 'gma', 'Glyma.10G248900' => 'gma', 'Glyma.11G137800' => 'gma', 'Glyma.12G061300' => 'gma', 'Glyma.13G337900' => 'gma', 'Glyma.15G036600' => 'gma', 'Glyma.18G182800' => 'gma', 'Glyma.19G222500' => 'gma', 'Glyma.20G144800' => 'gma', 'Gohir.A01G222000' => 'ghi', 'Gohir.A03G044000' => 'ghi', 'Gohir.A03G044100' => 'ghi', 'Gohir.A04G083100' => 'ghi', 'Gohir.A07G127200' => 'ghi', 'Gohir.A07G132400' => 'ghi', 'Gohir.A08G000700' => 'ghi', 'Gohir.A11G327300' => 'ghi', 'Gohir.D01G211500' => 'ghi', 'Gohir.D03G123400' => 'ghi', 'Gohir.D03G123500' => 'ghi', 'Gohir.D04G121800' => 'ghi', 'Gohir.D07G131500' => 'ghi', 'Gohir.D07G136600' => 'ghi', 'Gohir.D08G011600' => 'ghi', 'Gohir.D11G346200' => 'ghi', 'Gorai.001G142800' => 'gra', 'Gorai.001G148700' => 'gra', 'Gorai.002G257300' => 'gra', 'Gorai.003G130000' => 'gra', 'Gorai.003G130100' => 'gra', 'Gorai.004G005300' => 'gra', 'Gorai.007G376500' => 'gra', 'Gorai.012G104700' => 'gra', 'GSVIVG01017946001' => 'vvi', 'GSVIVG01024928001' => 'vvi', 'GSVIVG01028227001' => 'vvi', 'GSVIVG01034151001' => 'vvi', 'HanXRQChr05g0135031' => 'han', 'HanXRQChr05g0135041' => 'han', 'HanXRQChr05g0140021' => 'han', 'HanXRQChr06g0178981' => 'han', 'HanXRQChr07g0188251' => 'han', 'HanXRQChr08g0235311' => 'han', 'HanXRQChr09g0271011' => 'han', 'HanXRQChr10g0293321' => 'han', 'HanXRQChr13g0388171' => 'han', 'Haze_00916' => 'cav', 'Haze_05063' => 'cav', 'Haze_20814' => 'cav', 'Haze_24128' => 'cav', 'Hma1.2p1_0745F.1_g212010' => 'hma', 'Hma1.2p1_0757F.1_g213260' => 'hma', 'Hma1.2p1_0936F.1_g238840' => 'hma', 'Hma1.2p1_1735F.1_g299890' => 'hma', 'Hma1.2p1_1861F.1_g305685' => 'hma', 'HPP92_003397' => 'vpl', 'HPP92_012597' => 'vpl', 'HPP92_015520' => 'vpl', 'HPP92_015539' => 'vpl', 'HPP92_020373' => 'vpl', 'Hund04938' => 'sun', 'Hund10677' => 'sun', 'Hund11033' => 'sun', 'Hund12155' => 'sun', 'Lalb_Chr01g0022551' => 'lal', 'Lalb_Chr03g0042341' => 'lal', 'Lalb_Chr07g0192931' => 'lal', 'Lalb_Chr12g0209551' => 'lal', 'Lalb_Chr19g0125251' => 'lal', 'Lalb_Chr19g0137891' => 'lal', 'Lalb_Chr21g0304641' => 'lal', 'Lalb_Chr21g0309881' => 'lal', 'Lj1A5T12' => 'lonja', 'Lj1C148G10' => 'lonja', 'Lj2A93T83' => 'lonja', 'Lj3A738G68' => 'lonja', 'Lj3C966T1' => 'lonja', 'Lj3g0018958' => 'lja', 'Lj3g0021831' => 'lja', 'Lj3g0025443' => 'lja', 'Lj4g0026809' => 'lja', 'Lj5g0012558' => 'lja', 'Lj5g0021586' => 'lja', 'Lsat_1_v5_gn_5_156840' => 'lsa', 'Lsat_1_v5_gn_8_73460' => 'lsa', 'Lsat_1_v5_gn_8_73481' => 'lsa', 'Lsat_1_v5_gn_9_31601' => 'lsa', 'Lsat_1_v5_gn_9_77320' => 'lsa', 'Manes.01G171300' => 'mes', 'Manes.01G171400' => 'mes', 'Manes.01G236100' => 'mes', 'Manes.02G130500' => 'mes', 'Manes.02G130600' => 'mes', 'Manes.03G180200' => 'mes', 'Manes.05G007000' => 'mes', 'Manes.08G084400' => 'mes', 'Manes.09G092600' => 'mes', 'Manes.15G027900' => 'mes', 'MBI04_g40948_MAGBIO' => 'mbi', 'MBI14_g12123_MAGBIO' => 'mbi', 'MBI18_g28915_MAGBIO' => 'mbi', 'MCO09G053' => 'mco', 'MCO11G782' => 'mco', 'MCO15G215' => 'mco', 'MD03G1088500' => 'mdo', 'MD03G1088600' => 'mdo', 'MD04G1130800' => 'mdo', 'MD09G1291700' => 'mdo', 'MD11G1097500' => 'mdo', 'MD11G1097600' => 'mdo', 'MD12G1143900' => 'mdo', 'MD13G1191400' => 'mdo', 'MD16G1191500' => 'mdo', 'Medtr1g085570' => 'mtr', 'Medtr1g104610' => 'mtr', 'Medtr2g097520' => 'mtr', 'Medtr4g021800' => 'mtr', 'Medtr4g021825' => 'mtr', 'Medtr4g064270' => 'mtr', 'Medtr4g064380' => 'mtr', 'Medtr7g062150' => 'mtr', 'MELO3C003138.2' => 'cme', 'MELO3C005187.2' => 'cme', 'MELO3C009252.2' => 'cme', 'MELO3C014481.2' => 'cme', 'MELO3C020616.2' => 'cme', 'MELO3C020617.2' => 'cme', 'MELO3C020618.2' => 'cme', 'Migut.G00328' => 'egut', 'Migut.J00320' => 'egut', 'Migut.L01000' => 'egut', 'Migut.L01953' => 'egut', 'MSTRG.10253' => 'ama', 'MSTRG.19077' => 'ama', 'MSTRG.26780' => 'ama', 'MSTRG.4023' => 'ama', 'MSTRG.5655' => 'ama', 'MSTRG.9992' => 'ama', 'Nitab4.5_0000043g0310' => 'nta', 'Nitab4.5_0000463g0080' => 'nta', 'Nitab4.5_0000705g0170' => 'nta', 'Nitab4.5_0001326g0060' => 'nta', 'Nitab4.5_0001628g0030' => 'nta', 'Nitab4.5_0002103g0110' => 'nta', 'Nitab4.5_0002946g0030' => 'nta', 'Nitab4.5_0004639g0030' => 'nta', 'Nn2g11149' => 'nnu', 'Nn2g13389' => 'nnu', 'Nn4g25326' => 'nnu', 'Nn4g26290' => 'nnu', 'Nn5g29865' => 'nnu', 'Oeu004163.1' => 'oeu', 'Oeu006901.1' => 'oeu', 'Oeu010096.1' => 'oeu', 'Oeu024340.1' => 'oeu', 'Oeu048369.1' => 'oeu', 'Os01g0973000' => 'osa', 'Os03g0273800' => 'osa', 'Os03g0701200' => 'osa', 'Os03g0834050' => 'osa', 'Os07g0634400' => 'osa', 'Peaxi162Scf00092g01414' => 'pax', 'Peaxi162Scf00165g00818' => 'pax', 'Peaxi162Scf00309g00516' => 'pax', 'Peaxi162Scf00774g00218' => 'pax', 'PGR004G1824' => 'pgr', 'PGR004G2606' => 'pgr', 'PGR031G2716' => 'pgr', 'PGR102G2460' => 'pgr', 'PGR142G2599' => 'pgr', 'PGSC0003DMG400000843' => 'stu', 'PGSC0003DMG400008829' => 'stu', 'PGSC0003DMG400030418' => 'stu', 'PGSC0003DMG400031834' => 'stu', 'PGSC0003DMG401028300' => 'stu', 'PGSC0003DMG402028300' => 'stu', 'Phvul.001G219300' => 'pvu', 'Phvul.007G056000' => 'pvu', 'Phvul.007G208000' => 'pvu', 'Phvul.008G119500' => 'pvu', 'Phvul.010G011200' => 'pvu', 'Phvul.010G014800' => 'pvu', 'Phvul.011G062900' => 'pvu', 'Phvul.L007043' => 'pvu', 'Potri.001G242300' => 'ptr', 'Potri.002G185300' => 'ptr', 'Potri.006G086900' => 'ptr', 'Potri.008G151700' => 'ptr', 'Potri.009G033500' => 'ptr', 'Potri.010G089300' => 'ptr', 'Potri.014G110800' => 'ptr', 'Pp3c27_8130' => 'ppa', 'Pp3c6_27410' => 'ppa', 'PRCOL_00001659' => 'pco', 'PRCOL_00001927' => 'pco', 'PRCOL_00003649' => 'pco', 'Prupe.1G011600' => 'ppe', 'Prupe.3G000800' => 'ppe', 'Prupe.3G001100' => 'ppe', 'Prupe.6G072700' => 'ppe', 'Prupe.6G072800' => 'ppe', 'Prupe.6G257300' => 'ppe', 'Prupe.8G033000' => 'ppe', 'Psat0s2633g0080' => 'psa', 'Psat0s3396g0080' => 'psa', 'Psat0s3396g0200' => 'psa', 'Psat3g139080' => 'psa', 'Psat5g285080' => 'psa', 'Psat6g157760' => 'psa', 'Psat6g208440' => 'psa', 'Psat7g215320' => 'psa', 'Psat7g215400' => 'psa', 'Psat7g235600' => 'psa', 'Psat7g235760' => 'psa', 'PSO063G4603' => 'pso', 'PSO210G0182' => 'pso', 'PSO210G0196' => 'pso', 'PSO339G0394' => 'pso', 'PSO339G4127' => 'pso', 'PSO513G0064' => 'pso', 'PSO761G0079' => 'pso', 'QL01p031003' => 'qlo', 'QL01p031078' => 'qlo', 'QL06p003004' => 'qlo', 'QL07p048731' => 'qlo', 'QL09p037427' => 'qlo', 'RcHm_v2.0_Chr3g0466361' => 'rch', 'RcHm_v2.0_Chr3g0485571' => 'rch', 'RcHm_v2.0_Chr4g0416551' => 'rch', 'RcHm_v2.0_Chr5g0065831' => 'rch', 'Rhsim01G0230500' => 'rsi', 'Rhsim05G0194000' => 'rsi', 'Rhsim08G0250400' => 'rsi', 'Sabra02G0131000' => 'sbr', 'Sabra06G0066300' => 'sbr', 'Sabra08G0115500' => 'sbr', 'Sabra09G0023900' => 'sbr', 'Sabra10G0054000' => 'sbr', 'Sabra14G0081500' => 'sbr', 'Sabra16G0147100' => 'sbr', 'SalBow2G2957' => 'sbo', 'SalBow4G3320' => 'sbo', 'SalBow8G1894' => 'sbo', 'Sc07g0007950' => 'sci', 'Sc12g0001360' => 'sci', 'Sc13g0004330' => 'sci', 'Sc20g0005010' => 'sci', 'Sed0000361' => 'sed', 'Sed0001706' => 'sed', 'Sed0002422' => 'sed', 'Sed0004029' => 'sed', 'Sed0004602' => 'sed', 'Sed0004943' => 'sed', 'Sed0008646' => 'sed', 'Sed0023313' => 'sed', 'Sed0024843' => 'sed', 'SEGI_00081' => 'sgi', 'SEGI_00947' => 'sgi', 'SEGI_04046' => 'sgi', 'SEGI_06880' => 'sgi', 'SEGI_09736' => 'sgi', 'SEGI_12741' => 'sgi', 'SEGI_14530' => 'sgi', 'SEGI_20705' => 'sgi', 'SEGI_26088' => 'sgi', 'SEGI_28323' => 'sgi', 'SEGI_33343' => 'sgi', 'SGA_v2.0_scaffold126G33775' => 'sas', 'SGA_v2.0_scaffold2G01337' => 'sas', 'SGA_v2.0_scaffold38G15006' => 'sas', 'SGA_v2.0_scaffold39G15264' => 'sas', 'SGA_v2.0_scaffold453G51880' => 'sas', 'SHI12696' => 'shi', 'SMO367G1096' => 'smo', 'Solyc01g068630.3' => 'sly', 'Solyc05g011880.3' => 'sly', 'Solyc06g076300.3' => 'sly', 'Solyc09g010940.4' => 'sly', 'Solyc09g075890.3' => 'sly', 'Sopen01g030560' => 'spe', 'Sopen05g006630' => 'spe', 'Sopen06g032720' => 'spe', 'Sopen09g005660' => 'spe', 'Sopen09g030690' => 'spe', 'Sp4g14540' => 'spa', 'Sp4g20030' => 'spa', 'Sp5g01320' => 'spa', 'Sp6g21170' => 'spa', 'Sp6g21180' => 'spa', 'Sp6g21190' => 'spa', 'Sp6g40220' => 'spa', 'TAR362G0122' => 'tar', 'TAR362G1338' => 'tar', 'TAR369G0590' => 'tar', 'TAR371G0824' => 'tar', 'TAR622G1429' => 'tar', 'TAR623G0734' => 'tar', 'TAR625G0441' => 'tar', 'TAR629G0976' => 'tar', 'TAR633G1195' => 'tar', 'TAR636G2660' => 'tar', 'THA.LOC104799440' => 'tha', 'THA.LOC104800966' => 'tha', 'THA.LOC104806559' => 'tha', 'THA.LOC104810765' => 'tha', 'THA.LOC104816266' => 'tha', 'THA.LOC104817419' => 'tha', 'THA.LOC104827021' => 'tha', 'Thecc.01G327400' => 'tca', 'Thecc.04G229200' => 'tca', 'Thecc.05G037400' => 'tca', 'Thecc.09G318600' => 'tca', 'Thecc.09G318700' => 'tca', 'Thhalv10006238m.g' => 'esa', 'Thhalv10014321m.g' => 'esa', 'Thhalv10014335m.g' => 'esa', 'Thhalv10015826m.g' => 'esa', 'Thhalv10017107m.g' => 'esa', 'Thhalv10017180m.g' => 'esa', 'Thhalv10029339m.g' => 'esa', 'TPR.G1699' => 'tpr', 'TPR.G23609' => 'tpr', 'TPR.G3081' => 'tpr', 'TPR.G40397' => 'tpr', 'TPR.G5522' => 'tpr', 'TPR.G5618' => 'tpr', 'TPR.G5626' => 'tpr', 'TWI09G1632' => 'twi', 'TWI23G1230' => 'twi', 'TWI53G1064' => 'twi', 'TWI59G0751' => 'twi', 'TWI74G0947' => 'twi', 'TWI77G0337' => 'twi', 'TWI79G1254' => 'twi', 'unitig_0.g2341' => 'ugi', 'unitig_26.g10006' => 'ugi', 'unitig_26.g10008' => 'ugi', 'unitig_26.g9192' => 'ugi', 'vmacro14547' => 'vma', 'vmacro15333' => 'vma', 'vmacro18743' => 'vma', 'vmacro20166' => 'vma', 'VMungo0331G0523' => 'vmu', 'VMungo0331G1202' => 'vmu', 'VMungo0720G1228' => 'vmu', 'VMungo0720G1514' => 'vmu', 'VMungo1080G0169' => 'vmu', 'VMungo1127G1475' => 'vmu', 'VMungo1383G1208' => 'vmu', 'VMungo1383G1698' => 'vmu', 'Zm00001eb012270' => 'zma', 'Zm00001eb054100' => 'zma', 'Zm00001eb063350' => 'zma', 'Zm00001eb328560' => 'zma', 'Zm00001eb342820' => 'zma', 'Zm00001eb362210' => 'zma', 'Zm00001eb397730' => 'zma', 'Zm00001eb399750' => 'zma' ), 'gf_id' => 'HOM05D000959', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000959' ), 'data_identifier' => 'HOM05D000959', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000959', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '622', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p07100' => 'bna', 'A03p11720' => 'bna', 'A05p08300' => 'bna', 'A05p13380' => 'bna', 'A09p54130' => 'bna', 'A10p16690' => 'bna', 'A10p16700' => 'bna', 'A10p33390' => 'bna', 'Aa31LG10G16020' => 'aar', 'Aa31LG1G11810' => 'aar', 'Aa31LG1G11830' => 'aar', 'Aa31LG1G22510' => 'aar', 'Aa31LG5G4890' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5793' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2310' => 'aag', 'Actinidia08499' => 'ach', 'Actinidia11262' => 'ach', 'Actinidia23926' => 'ach', 'Actinidia34420' => 'ach', 'Actinidia36970' => 'ach', 'Ah.02g111220' => 'amhyb', 'Ah.15g097750' => 'amhyb', 'AL4G27500' => 'aly', 'AL6G11470' => 'aly', 'AL8G35950' => 'aly', 'AL8G35960' => 'aly', 'AL8G35970' => 'aly', 'Aqoxy1G00912' => 'aox', 'Aqoxy2G02253' => 'aox', 'Aqoxy2G02411' => 'aox', 'Aqoxy5G00485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BZ66YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K8ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM4FUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6BF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HFV7XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25JBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0YNNV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MAKK6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P70IT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP2Z6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V61LZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YWP64R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3S9AI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7PGHH' => 'arhy', 'AT2G32150' => 'ath', 'AT3G62040' => 'ath', 'AT5G02230' => 'ath', 'AT5G59480' => 'ath', 'AT5G59490' => 'ath', 'ATR0332G060' => 'atr', 'ATR0559G190' => 'atr', 'ATR0693G294' => 'atr', 'Atru.chr3.3975' => 'acertr', 'Atru.chr3.3976' => 'acertr', 'Atru.chr3.3977' => 'acertr', 'Atru.chr4.2498' => 'acertr', 'Atru.chr5.838' => 'acertr', 'Atru.chr8.1990' => 'acertr', 'Atru.chr8.1991' => 'acertr', 'Atru.chr8.1992' => 'acertr', 'AUR62001759' => 'cqu', 'AUR62009545' => 'cqu', 'AUR62010474' => 'cqu', 'AUR62025820' => 'cqu', 'AUR62030422' => 'cqu', 'AUR62033605' => 'cqu', 'AUR62038615' => 'cqu', 'AUR62041347' => 'cqu', 'BcaB01g04574' => 'bca', 'BcaB02g09263' => 'bca', 'BcaB02g10453' => 'bca', 'BcaB05g22513' => 'bca', 'BcaB08g36253' => 'bca', 'BcaB08g36254' => 'bca', 'BcaC01g06519' => 'bca', 'BcaC02g11889' => 'bca', 'BcaC03g14010' => 'bca', 'BcaC03g18439' => 'bca', 'BcaC04g19765' => 'bca', 'BcaC09g48432' => 'bca', 'BcaNung07302' => 'bca', 'BolC2t06040H' => 'bol', 'BolC2t07346H' => 'bol', 'BolC3t13817H' => 'bol', 'BolC4t22625H' => 'bol', 'BolC4t23297H' => 'bol', 'BolC8t51278H' => 'bol', 'BolC9t58050H' => 'bol', 'BolC9t58051H' => 'bol', 'BolC9t60163H' => 'bol', 'BraA02t04712Z' => 'bra', 'BraA02t05791Z' => 'bra', 'BraA03t10483Z' => 'bra', 'BraA05t19795Z' => 'bra', 'BraA05t20276Z' => 'bra', 'BraA09t40827Z' => 'bra', 'BraA10t43750Z' => 'bra', 'BraA10t43751Z' => 'bra', 'BraA10t45370Z' => 'bra', 'C02p00400' => 'bna', 'C02p12460' => 'bna', 'C03p13680' => 'bna', 'C04p10270' => 'bna', 'C04p17500' => 'bna', 'C08p37010' => 'bna', 'C09p51880' => 'bna', 'C09p51890' => 'bna', 'C09p74300' => 'bna', 'CAN.G179.26' => 'can', 'CAN.G3384.1' => 'can', 'CAN.G394.68' => 'can', 'CAN.G907.13' => 'can', 'CANSAT11G0012' => 'cansat', 'CANSAT25G1586' => 'cansat', 'CANSAT35G0735' => 'cansat', 'CANSAT54G0556' => 'cansat', 'CANSAT64G0356' => 'cansat', 'CANSAT78G2042' => 'cansat', 'CARHR125920' => 'chi', 'CARHR131910' => 'chi', 'CARHR172390' => 'chi', 'CARHR211140' => 'chi', 'CARHR285850' => 'chi', 'CARHR285860' => 'chi', 'Carub.0004s1347' => 'cru', 'Carub.0004s1960' => 'cru', 'Carub.0005s2880' => 'cru', 'Carub.0006s0107' => 'cru', 'Carub.0008s2015' => 'cru', 'Carub.0008s2016' => 'cru', 'Carub.0008s2017' => 'cru', 'Ca_01315_v3' => 'car', 'Ca_05063_v3' => 'car', 'Ca_10231_v3' => 'car', 'Ca_10913_v3' => 'car', 'Ca_19156_v3' => 'car', 'Ca_23644_v3' => 'car', 'Ca_26735_v3' => 'car', 'Cc01_g13130' => 'ccan', 'Cc02_g21690' => 'ccan', 'Cc03_g03600' => 'ccan', 'Cc06_g02510' => 'ccan', 'CDE02G1265' => 'cde', 'CDE05G0415' => 'cde', 'CDE08G1082' => 'cde', 'Cfa005780' => 'cfa', 'Cfa011522' => 'cfa', 'Cfa011523' => 'cfa', 'Cfa015627' => 'cfa', 'Cfa017359' => 'cfa', 'Ciclev10005687m.g' => 'ccl', 'Ciclev10012173m.g' => 'ccl', 'Ciclev10021621m.g' => 'ccl', 'Ciclev10028968m.g' => 'ccl', 'Ciclev10029907m.g' => 'ccl', 'CiPaw.01G164800' => 'cil', 'CiPaw.07G083700' => 'cil', 'CiPaw.07G127000' => 'cil', 'CiPaw.07G136900' => 'cil', 'CiPaw.08G081700' => 'cil', 'CiPaw.09G194600' => 'cil', 'CiPaw.10G146500' => 'cil', 'CiPaw.13G091500' => 'cil', 'CiPaw.13G091600' => 'cil', 'ClCG00G003390' => 'cla', 'ClCG01G007220' => 'cla', 'ClCG03G001370' => 'cla', 'ClCG04G008100' => 'cla', 'ClCG06G006110' => 'cla', 'ClCG06G006130' => 'cla', 'ClCG10G021210' => 'cla', 'COL.COLO4_07648' => 'col', 'COL.COLO4_07650' => 'col', 'COL.COLO4_07651' => 'col', 'COL.COLO4_14780' => 'col', 'COL.COLO4_18546' => 'col', 'COL.COLO4_18547' => 'col', 'COL.COLO4_23103' => 'col', 'COL.COLO4_30419' => 'col', 'COL.COLO4_34232' => 'col', 'Cpa.g.sc169.20' => 'cpa', 'Cpa.g.sc57.45' => 'cpa', 'Cpa.g.sc58.124' => 'cpa', 'Cpa.g.sc58.125' => 'cpa', 'Cpa.g.sc81.118' => 'cpa', 'Cpa.g.sc81.119' => 'cpa', 'Cre12.g524700' => 'cre', 'CsaV3_1G034430' => 'csa', 'CsaV3_1G034440' => 'csa', 'CsaV3_1G034450' => 'csa', 'CsaV3_3G034830' => 'csa', 'CsaV3_4G025090' => 'csa', 'CsaV3_5G018660' => 'csa', 'CsaV3_6G038160' => 'csa', 'CSS0003447' => 'camsi', 'CSS0017840' => 'camsi', 'CSS0019260' => 'camsi', 'CSS0040375' => 'camsi', 'CSS0042533' => 'camsi', 'DCAR_005960' => 'dca', 'DCAR_012104' => 'dca', 'DCAR_012105' => 'dca', 'DCAR_012293' => 'dca', 'DCAR_015632' => 'dca', 'DCAR_024602' => 'dca', 'DCAR_028752' => 'dca', 'Dinv06261' => 'din', 'Dinv13982' => 'din', 'Dinv17029' => 'din', 'Dinv18463' => 'din', 'Dinv33181' => 'din', 'Dinv35585' => 'din', 'Dinv37161' => 'din', 'Dinv42977' => 'din', 'Dinv43122' => 'din', 'Dinv44517' => 'din', 'Duzib093G0256' => 'dzi', 'Duzib106G1254' => 'dzi', 'Duzib128G1789' => 'dzi', 'Duzib133G0633' => 'dzi', 'Duzib138G0510' => 'dzi', 'Duzib150G1084' => 'dzi', 'Duzib168G0488' => 'dzi', 'Duzib168G1523' => 'dzi', 'Duzib170G0133' => 'dzi', 'ECA234G1433' => 'eca', 'ECA236G1432' => 'eca', 'ECA236G2256' => 'eca', 'ECA236G2365' => 'eca', 'ECA236G4830' => 'eca', 'ECA248G1505' => 'eca', 'EL10Ac3g06431' => 'bvu', 'EL10Ac5g12577' => 'bvu', 'EL10Ac6g13533' => 'bvu', 'EL10Ac7g16045' => 'bvu', 'Eucgr.A01281' => 'egr', 'Eucgr.B02326' => 'egr', 'Eucgr.H03532' => 'egr', 'Eucgr.K00553' => 'egr', 'Eucgr.K03116' => 'egr', 'FAN02G3963' => 'fan', 'FAN05G0438' => 'fan', 'FAN09G2434' => 'fan', 'FAN12G3984' => 'fan', 'FAN14G0798' => 'fan', 'FAN17G0652' => 'fan', 'FAN19G1988' => 'fan', 'FAN22G0632' => 'fan', 'FAN23G0387' => 'fan', 'FAN26G1323' => 'fan', 'FAN28G0666' => 'fan', 'FvH4_1g26080' => 'fve', 'FvH4_3g36780' => 'fve', 'FvH4_4g15270' => 'fve', 'FvH4_6g13490' => 'fve', 'Glyma.01G098700' => 'gma', 'Glyma.03G065900' => 'gma', 'Glyma.03G073754' => 'gma', 'Glyma.03G073758' => 'gma', 'Glyma.03G083200' => 'gma', 'Glyma.03G225500' => 'gma', 'Glyma.05G037766' => 'gma', 'Glyma.07G133500' => 'gma', 'Glyma.10G139400' => 'gma', 'Glyma.10G248900' => 'gma', 'Glyma.11G137800' => 'gma', 'Glyma.12G061300' => 'gma', 'Glyma.13G337900' => 'gma', 'Glyma.15G036600' => 'gma', 'Glyma.18G182800' => 'gma', 'Glyma.19G222500' => 'gma', 'Glyma.20G144800' => 'gma', 'Gohir.A01G222000' => 'ghi', 'Gohir.A03G044000' => 'ghi', 'Gohir.A03G044100' => 'ghi', 'Gohir.A04G083100' => 'ghi', 'Gohir.A07G127200' => 'ghi', 'Gohir.A07G132400' => 'ghi', 'Gohir.A08G000700' => 'ghi', 'Gohir.A11G327300' => 'ghi', 'Gohir.D01G211500' => 'ghi', 'Gohir.D03G123400' => 'ghi', 'Gohir.D03G123500' => 'ghi', 'Gohir.D04G121800' => 'ghi', 'Gohir.D07G131500' => 'ghi', 'Gohir.D07G136600' => 'ghi', 'Gohir.D08G011600' => 'ghi', 'Gohir.D11G346200' => 'ghi', 'Gorai.001G142800' => 'gra', 'Gorai.001G148700' => 'gra', 'Gorai.002G257300' => 'gra', 'Gorai.003G130000' => 'gra', 'Gorai.003G130100' => 'gra', 'Gorai.004G005300' => 'gra', 'Gorai.007G376500' => 'gra', 'Gorai.012G104700' => 'gra', 'GSVIVG01017946001' => 'vvi', 'GSVIVG01024928001' => 'vvi', 'GSVIVG01028227001' => 'vvi', 'GSVIVG01034151001' => 'vvi', 'HanXRQChr05g0135031' => 'han', 'HanXRQChr05g0135041' => 'han', 'HanXRQChr05g0140021' => 'han', 'HanXRQChr06g0178981' => 'han', 'HanXRQChr07g0188251' => 'han', 'HanXRQChr08g0235311' => 'han', 'HanXRQChr09g0271011' => 'han', 'HanXRQChr10g0293321' => 'han', 'HanXRQChr13g0388171' => 'han', 'Haze_00916' => 'cav', 'Haze_05063' => 'cav', 'Haze_20814' => 'cav', 'Haze_24128' => 'cav', 'Hma1.2p1_0745F.1_g212010' => 'hma', 'Hma1.2p1_0757F.1_g213260' => 'hma', 'Hma1.2p1_0936F.1_g238840' => 'hma', 'Hma1.2p1_1735F.1_g299890' => 'hma', 'Hma1.2p1_1861F.1_g305685' => 'hma', 'HPP92_003397' => 'vpl', 'HPP92_012597' => 'vpl', 'HPP92_015520' => 'vpl', 'HPP92_015539' => 'vpl', 'HPP92_020373' => 'vpl', 'Hund04938' => 'sun', 'Hund10677' => 'sun', 'Hund11033' => 'sun', 'Hund12155' => 'sun', 'Lalb_Chr01g0022551' => 'lal', 'Lalb_Chr03g0042341' => 'lal', 'Lalb_Chr07g0192931' => 'lal', 'Lalb_Chr12g0209551' => 'lal', 'Lalb_Chr19g0125251' => 'lal', 'Lalb_Chr19g0137891' => 'lal', 'Lalb_Chr21g0304641' => 'lal', 'Lalb_Chr21g0309881' => 'lal', 'Lj1A5T12' => 'lonja', 'Lj1C148G10' => 'lonja', 'Lj2A93T83' => 'lonja', 'Lj3A738G68' => 'lonja', 'Lj3C966T1' => 'lonja', 'Lj3g0018958' => 'lja', 'Lj3g0021831' => 'lja', 'Lj3g0025443' => 'lja', 'Lj4g0026809' => 'lja', 'Lj5g0012558' => 'lja', 'Lj5g0021586' => 'lja', 'Lsat_1_v5_gn_5_156840' => 'lsa', 'Lsat_1_v5_gn_8_73460' => 'lsa', 'Lsat_1_v5_gn_8_73481' => 'lsa', 'Lsat_1_v5_gn_9_31601' => 'lsa', 'Lsat_1_v5_gn_9_77320' => 'lsa', 'Manes.01G171300' => 'mes', 'Manes.01G171400' => 'mes', 'Manes.01G236100' => 'mes', 'Manes.02G130500' => 'mes', 'Manes.02G130600' => 'mes', 'Manes.03G180200' => 'mes', 'Manes.05G007000' => 'mes', 'Manes.08G084400' => 'mes', 'Manes.09G092600' => 'mes', 'Manes.15G027900' => 'mes', 'MBI04_g40948_MAGBIO' => 'mbi', 'MBI14_g12123_MAGBIO' => 'mbi', 'MBI18_g28915_MAGBIO' => 'mbi', 'MCO09G053' => 'mco', 'MCO11G782' => 'mco', 'MCO15G215' => 'mco', 'MD03G1088500' => 'mdo', 'MD03G1088600' => 'mdo', 'MD04G1130800' => 'mdo', 'MD09G1291700' => 'mdo', 'MD11G1097500' => 'mdo', 'MD11G1097600' => 'mdo', 'MD12G1143900' => 'mdo', 'MD13G1191400' => 'mdo', 'MD16G1191500' => 'mdo', 'Medtr1g085570' => 'mtr', 'Medtr1g104610' => 'mtr', 'Medtr2g097520' => 'mtr', 'Medtr4g021800' => 'mtr', 'Medtr4g021825' => 'mtr', 'Medtr4g064270' => 'mtr', 'Medtr4g064380' => 'mtr', 'Medtr7g062150' => 'mtr', 'MELO3C003138.2' => 'cme', 'MELO3C005187.2' => 'cme', 'MELO3C009252.2' => 'cme', 'MELO3C014481.2' => 'cme', 'MELO3C020616.2' => 'cme', 'MELO3C020617.2' => 'cme', 'MELO3C020618.2' => 'cme', 'Migut.G00328' => 'egut', 'Migut.J00320' => 'egut', 'Migut.L01000' => 'egut', 'Migut.L01953' => 'egut', 'MSTRG.10253' => 'ama', 'MSTRG.19077' => 'ama', 'MSTRG.26780' => 'ama', 'MSTRG.4023' => 'ama', 'MSTRG.5655' => 'ama', 'MSTRG.9992' => 'ama', 'Nitab4.5_0000043g0310' => 'nta', 'Nitab4.5_0000463g0080' => 'nta', 'Nitab4.5_0000705g0170' => 'nta', 'Nitab4.5_0001326g0060' => 'nta', 'Nitab4.5_0001628g0030' => 'nta', 'Nitab4.5_0002103g0110' => 'nta', 'Nitab4.5_0002946g0030' => 'nta', 'Nitab4.5_0004639g0030' => 'nta', 'Nn2g11149' => 'nnu', 'Nn2g13389' => 'nnu', 'Nn4g25326' => 'nnu', 'Nn4g26290' => 'nnu', 'Nn5g29865' => 'nnu', 'Oeu004163.1' => 'oeu', 'Oeu006901.1' => 'oeu', 'Oeu010096.1' => 'oeu', 'Oeu024340.1' => 'oeu', 'Oeu048369.1' => 'oeu', 'Os01g0973000' => 'osa', 'Os03g0273800' => 'osa', 'Os03g0701200' => 'osa', 'Os03g0834050' => 'osa', 'Os07g0634400' => 'osa', 'Peaxi162Scf00092g01414' => 'pax', 'Peaxi162Scf00165g00818' => 'pax', 'Peaxi162Scf00309g00516' => 'pax', 'Peaxi162Scf00774g00218' => 'pax', 'PGR004G1824' => 'pgr', 'PGR004G2606' => 'pgr', 'PGR031G2716' => 'pgr', 'PGR102G2460' => 'pgr', 'PGR142G2599' => 'pgr', 'PGSC0003DMG400000843' => 'stu', 'PGSC0003DMG400008829' => 'stu', 'PGSC0003DMG400030418' => 'stu', 'PGSC0003DMG400031834' => 'stu', 'PGSC0003DMG401028300' => 'stu', 'PGSC0003DMG402028300' => 'stu', 'Phvul.001G219300' => 'pvu', 'Phvul.007G056000' => 'pvu', 'Phvul.007G208000' => 'pvu', 'Phvul.008G119500' => 'pvu', 'Phvul.010G011200' => 'pvu', 'Phvul.010G014800' => 'pvu', 'Phvul.011G062900' => 'pvu', 'Phvul.L007043' => 'pvu', 'Potri.001G242300' => 'ptr', 'Potri.002G185300' => 'ptr', 'Potri.006G086900' => 'ptr', 'Potri.008G151700' => 'ptr', 'Potri.009G033500' => 'ptr', 'Potri.010G089300' => 'ptr', 'Potri.014G110800' => 'ptr', 'Pp3c27_8130' => 'ppa', 'Pp3c6_27410' => 'ppa', 'PRCOL_00001659' => 'pco', 'PRCOL_00001927' => 'pco', 'PRCOL_00003649' => 'pco', 'Prupe.1G011600' => 'ppe', 'Prupe.3G000800' => 'ppe', 'Prupe.3G001100' => 'ppe', 'Prupe.6G072700' => 'ppe', 'Prupe.6G072800' => 'ppe', 'Prupe.6G257300' => 'ppe', 'Prupe.8G033000' => 'ppe', 'Psat0s2633g0080' => 'psa', 'Psat0s3396g0080' => 'psa', 'Psat0s3396g0200' => 'psa', 'Psat3g139080' => 'psa', 'Psat5g285080' => 'psa', 'Psat6g157760' => 'psa', 'Psat6g208440' => 'psa', 'Psat7g215320' => 'psa', 'Psat7g215400' => 'psa', 'Psat7g235600' => 'psa', 'Psat7g235760' => 'psa', 'PSO063G4603' => 'pso', 'PSO210G0182' => 'pso', 'PSO210G0196' => 'pso', 'PSO339G0394' => 'pso', 'PSO339G4127' => 'pso', 'PSO513G0064' => 'pso', 'PSO761G0079' => 'pso', 'QL01p031003' => 'qlo', 'QL01p031078' => 'qlo', 'QL06p003004' => 'qlo', 'QL07p048731' => 'qlo', 'QL09p037427' => 'qlo', 'RcHm_v2.0_Chr3g0466361' => 'rch', 'RcHm_v2.0_Chr3g0485571' => 'rch', 'RcHm_v2.0_Chr4g0416551' => 'rch', 'RcHm_v2.0_Chr5g0065831' => 'rch', 'Rhsim01G0230500' => 'rsi', 'Rhsim05G0194000' => 'rsi', 'Rhsim08G0250400' => 'rsi', 'Sabra02G0131000' => 'sbr', 'Sabra06G0066300' => 'sbr', 'Sabra08G0115500' => 'sbr', 'Sabra09G0023900' => 'sbr', 'Sabra10G0054000' => 'sbr', 'Sabra14G0081500' => 'sbr', 'Sabra16G0147100' => 'sbr', 'SalBow2G2957' => 'sbo', 'SalBow4G3320' => 'sbo', 'SalBow8G1894' => 'sbo', 'Sc07g0007950' => 'sci', 'Sc12g0001360' => 'sci', 'Sc13g0004330' => 'sci', 'Sc20g0005010' => 'sci', 'Sed0000361' => 'sed', 'Sed0001706' => 'sed', 'Sed0002422' => 'sed', 'Sed0004029' => 'sed', 'Sed0004602' => 'sed', 'Sed0004943' => 'sed', 'Sed0008646' => 'sed', 'Sed0023313' => 'sed', 'Sed0024843' => 'sed', 'SEGI_00081' => 'sgi', 'SEGI_00947' => 'sgi', 'SEGI_04046' => 'sgi', 'SEGI_06880' => 'sgi', 'SEGI_09736' => 'sgi', 'SEGI_12741' => 'sgi', 'SEGI_14530' => 'sgi', 'SEGI_20705' => 'sgi', 'SEGI_26088' => 'sgi', 'SEGI_28323' => 'sgi', 'SEGI_33343' => 'sgi', 'SGA_v2.0_scaffold126G33775' => 'sas', 'SGA_v2.0_scaffold2G01337' => 'sas', 'SGA_v2.0_scaffold38G15006' => 'sas', 'SGA_v2.0_scaffold39G15264' => 'sas', 'SGA_v2.0_scaffold453G51880' => 'sas', 'SHI12696' => 'shi', 'SMO367G1096' => 'smo', 'Solyc01g068630.3' => 'sly', 'Solyc05g011880.3' => 'sly', 'Solyc06g076300.3' => 'sly', 'Solyc09g010940.4' => 'sly', 'Solyc09g075890.3' => 'sly', 'Sopen01g030560' => 'spe', 'Sopen05g006630' => 'spe', 'Sopen06g032720' => 'spe', 'Sopen09g005660' => 'spe', 'Sopen09g030690' => 'spe', 'Sp4g14540' => 'spa', 'Sp4g20030' => 'spa', 'Sp5g01320' => 'spa', 'Sp6g21170' => 'spa', 'Sp6g21180' => 'spa', 'Sp6g21190' => 'spa', 'Sp6g40220' => 'spa', 'TAR362G0122' => 'tar', 'TAR362G1338' => 'tar', 'TAR369G0590' => 'tar', 'TAR371G0824' => 'tar', 'TAR622G1429' => 'tar', 'TAR623G0734' => 'tar', 'TAR625G0441' => 'tar', 'TAR629G0976' => 'tar', 'TAR633G1195' => 'tar', 'TAR636G2660' => 'tar', 'THA.LOC104799440' => 'tha', 'THA.LOC104800966' => 'tha', 'THA.LOC104806559' => 'tha', 'THA.LOC104810765' => 'tha', 'THA.LOC104816266' => 'tha', 'THA.LOC104817419' => 'tha', 'THA.LOC104827021' => 'tha', 'Thecc.01G327400' => 'tca', 'Thecc.04G229200' => 'tca', 'Thecc.05G037400' => 'tca', 'Thecc.09G318600' => 'tca', 'Thecc.09G318700' => 'tca', 'Thhalv10006238m.g' => 'esa', 'Thhalv10014321m.g' => 'esa', 'Thhalv10014335m.g' => 'esa', 'Thhalv10015826m.g' => 'esa', 'Thhalv10017107m.g' => 'esa', 'Thhalv10017180m.g' => 'esa', 'Thhalv10029339m.g' => 'esa', 'TPR.G1699' => 'tpr', 'TPR.G23609' => 'tpr', 'TPR.G3081' => 'tpr', 'TPR.G40397' => 'tpr', 'TPR.G5522' => 'tpr', 'TPR.G5618' => 'tpr', 'TPR.G5626' => 'tpr', 'TWI09G1632' => 'twi', 'TWI23G1230' => 'twi', 'TWI53G1064' => 'twi', 'TWI59G0751' => 'twi', 'TWI74G0947' => 'twi', 'TWI77G0337' => 'twi', 'TWI79G1254' => 'twi', 'unitig_0.g2341' => 'ugi', 'unitig_26.g10006' => 'ugi', 'unitig_26.g10008' => 'ugi', 'unitig_26.g9192' => 'ugi', 'vmacro14547' => 'vma', 'vmacro15333' => 'vma', 'vmacro18743' => 'vma', 'vmacro20166' => 'vma', 'VMungo0331G0523' => 'vmu', 'VMungo0331G1202' => 'vmu', 'VMungo0720G1228' => 'vmu', 'VMungo0720G1514' => 'vmu', 'VMungo1080G0169' => 'vmu', 'VMungo1127G1475' => 'vmu', 'VMungo1383G1208' => 'vmu', 'VMungo1383G1698' => 'vmu', 'Zm00001eb012270' => 'zma', 'Zm00001eb054100' => 'zma', 'Zm00001eb063350' => 'zma', 'Zm00001eb328560' => 'zma', 'Zm00001eb342820' => 'zma', 'Zm00001eb362210' => 'zma', 'Zm00001eb397730' => 'zma', 'Zm00001eb399750' => 'zma' ) $gf_id = 'HOM05D000959' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000959' ) $data_identifier = 'HOM05D000959' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 5, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 5, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 10, 'mbi' => (int) 3, 'mco' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 2, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 3, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 11, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399750' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000959', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '622', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p07100' => 'bna', 'A03p11720' => 'bna', 'A05p08300' => 'bna', 'A05p13380' => 'bna', 'A09p54130' => 'bna', 'A10p16690' => 'bna', 'A10p16700' => 'bna', 'A10p33390' => 'bna', 'Aa31LG10G16020' => 'aar', 'Aa31LG1G11810' => 'aar', 'Aa31LG1G11830' => 'aar', 'Aa31LG1G22510' => 'aar', 'Aa31LG5G4890' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5793' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2310' => 'aag', 'Actinidia08499' => 'ach', 'Actinidia11262' => 'ach', 'Actinidia23926' => 'ach', 'Actinidia34420' => 'ach', 'Actinidia36970' => 'ach', 'Ah.02g111220' => 'amhyb', 'Ah.15g097750' => 'amhyb', 'AL4G27500' => 'aly', 'AL6G11470' => 'aly', 'AL8G35950' => 'aly', 'AL8G35960' => 'aly', 'AL8G35970' => 'aly', 'Aqoxy1G00912' => 'aox', 'Aqoxy2G02253' => 'aox', 'Aqoxy2G02411' => 'aox', 'Aqoxy5G00485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BZ66YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K8ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM4FUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6BF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HFV7XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25JBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0YNNV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MAKK6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P70IT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP2Z6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V61LZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YWP64R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3S9AI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7PGHH' => 'arhy', 'AT2G32150' => 'ath', 'AT3G62040' => 'ath', 'AT5G02230' => 'ath', 'AT5G59480' => 'ath', 'AT5G59490' => 'ath', 'ATR0332G060' => 'atr', 'ATR0559G190' => 'atr', 'ATR0693G294' => 'atr', 'Atru.chr3.3975' => 'acertr', 'Atru.chr3.3976' => 'acertr', 'Atru.chr3.3977' => 'acertr', 'Atru.chr4.2498' => 'acertr', 'Atru.chr5.838' => 'acertr', 'Atru.chr8.1990' => 'acertr', 'Atru.chr8.1991' => 'acertr', 'Atru.chr8.1992' => 'acertr', 'AUR62001759' => 'cqu', 'AUR62009545' => 'cqu', 'AUR62010474' => 'cqu', 'AUR62025820' => 'cqu', 'AUR62030422' => 'cqu', 'AUR62033605' => 'cqu', 'AUR62038615' => 'cqu', 'AUR62041347' => 'cqu', 'BcaB01g04574' => 'bca', 'BcaB02g09263' => 'bca', 'BcaB02g10453' => 'bca', 'BcaB05g22513' => 'bca', 'BcaB08g36253' => 'bca', 'BcaB08g36254' => 'bca', 'BcaC01g06519' => 'bca', 'BcaC02g11889' => 'bca', 'BcaC03g14010' => 'bca', 'BcaC03g18439' => 'bca', 'BcaC04g19765' => 'bca', 'BcaC09g48432' => 'bca', 'BcaNung07302' => 'bca', 'BolC2t06040H' => 'bol', 'BolC2t07346H' => 'bol', 'BolC3t13817H' => 'bol', 'BolC4t22625H' => 'bol', 'BolC4t23297H' => 'bol', 'BolC8t51278H' => 'bol', 'BolC9t58050H' => 'bol', 'BolC9t58051H' => 'bol', 'BolC9t60163H' => 'bol', 'BraA02t04712Z' => 'bra', 'BraA02t05791Z' => 'bra', 'BraA03t10483Z' => 'bra', 'BraA05t19795Z' => 'bra', 'BraA05t20276Z' => 'bra', 'BraA09t40827Z' => 'bra', 'BraA10t43750Z' => 'bra', 'BraA10t43751Z' => 'bra', 'BraA10t45370Z' => 'bra', 'C02p00400' => 'bna', 'C02p12460' => 'bna', 'C03p13680' => 'bna', 'C04p10270' => 'bna', 'C04p17500' => 'bna', 'C08p37010' => 'bna', 'C09p51880' => 'bna', 'C09p51890' => 'bna', 'C09p74300' => 'bna', 'CAN.G179.26' => 'can', 'CAN.G3384.1' => 'can', 'CAN.G394.68' => 'can', 'CAN.G907.13' => 'can', 'CANSAT11G0012' => 'cansat', 'CANSAT25G1586' => 'cansat', 'CANSAT35G0735' => 'cansat', 'CANSAT54G0556' => 'cansat', 'CANSAT64G0356' => 'cansat', 'CANSAT78G2042' => 'cansat', 'CARHR125920' => 'chi', 'CARHR131910' => 'chi', 'CARHR172390' => 'chi', 'CARHR211140' => 'chi', 'CARHR285850' => 'chi', 'CARHR285860' => 'chi', 'Carub.0004s1347' => 'cru', 'Carub.0004s1960' => 'cru', 'Carub.0005s2880' => 'cru', 'Carub.0006s0107' => 'cru', 'Carub.0008s2015' => 'cru', 'Carub.0008s2016' => 'cru', 'Carub.0008s2017' => 'cru', 'Ca_01315_v3' => 'car', 'Ca_05063_v3' => 'car', 'Ca_10231_v3' => 'car', 'Ca_10913_v3' => 'car', 'Ca_19156_v3' => 'car', 'Ca_23644_v3' => 'car', 'Ca_26735_v3' => 'car', 'Cc01_g13130' => 'ccan', 'Cc02_g21690' => 'ccan', 'Cc03_g03600' => 'ccan', 'Cc06_g02510' => 'ccan', 'CDE02G1265' => 'cde', 'CDE05G0415' => 'cde', 'CDE08G1082' => 'cde', 'Cfa005780' => 'cfa', 'Cfa011522' => 'cfa', 'Cfa011523' => 'cfa', 'Cfa015627' => 'cfa', 'Cfa017359' => 'cfa', 'Ciclev10005687m.g' => 'ccl', 'Ciclev10012173m.g' => 'ccl', 'Ciclev10021621m.g' => 'ccl', 'Ciclev10028968m.g' => 'ccl', 'Ciclev10029907m.g' => 'ccl', 'CiPaw.01G164800' => 'cil', 'CiPaw.07G083700' => 'cil', 'CiPaw.07G127000' => 'cil', 'CiPaw.07G136900' => 'cil', 'CiPaw.08G081700' => 'cil', 'CiPaw.09G194600' => 'cil', 'CiPaw.10G146500' => 'cil', 'CiPaw.13G091500' => 'cil', 'CiPaw.13G091600' => 'cil', 'ClCG00G003390' => 'cla', 'ClCG01G007220' => 'cla', 'ClCG03G001370' => 'cla', 'ClCG04G008100' => 'cla', 'ClCG06G006110' => 'cla', 'ClCG06G006130' => 'cla', 'ClCG10G021210' => 'cla', 'COL.COLO4_07648' => 'col', 'COL.COLO4_07650' => 'col', 'COL.COLO4_07651' => 'col', 'COL.COLO4_14780' => 'col', 'COL.COLO4_18546' => 'col', 'COL.COLO4_18547' => 'col', 'COL.COLO4_23103' => 'col', 'COL.COLO4_30419' => 'col', 'COL.COLO4_34232' => 'col', 'Cpa.g.sc169.20' => 'cpa', 'Cpa.g.sc57.45' => 'cpa', 'Cpa.g.sc58.124' => 'cpa', 'Cpa.g.sc58.125' => 'cpa', 'Cpa.g.sc81.118' => 'cpa', 'Cpa.g.sc81.119' => 'cpa', 'Cre12.g524700' => 'cre', 'CsaV3_1G034430' => 'csa', 'CsaV3_1G034440' => 'csa', 'CsaV3_1G034450' => 'csa', 'CsaV3_3G034830' => 'csa', 'CsaV3_4G025090' => 'csa', 'CsaV3_5G018660' => 'csa', 'CsaV3_6G038160' => 'csa', 'CSS0003447' => 'camsi', 'CSS0017840' => 'camsi', 'CSS0019260' => 'camsi', 'CSS0040375' => 'camsi', 'CSS0042533' => 'camsi', 'DCAR_005960' => 'dca', 'DCAR_012104' => 'dca', 'DCAR_012105' => 'dca', 'DCAR_012293' => 'dca', 'DCAR_015632' => 'dca', 'DCAR_024602' => 'dca', 'DCAR_028752' => 'dca', 'Dinv06261' => 'din', 'Dinv13982' => 'din', 'Dinv17029' => 'din', 'Dinv18463' => 'din', 'Dinv33181' => 'din', 'Dinv35585' => 'din', 'Dinv37161' => 'din', 'Dinv42977' => 'din', 'Dinv43122' => 'din', 'Dinv44517' => 'din', 'Duzib093G0256' => 'dzi', 'Duzib106G1254' => 'dzi', 'Duzib128G1789' => 'dzi', 'Duzib133G0633' => 'dzi', 'Duzib138G0510' => 'dzi', 'Duzib150G1084' => 'dzi', 'Duzib168G0488' => 'dzi', 'Duzib168G1523' => 'dzi', 'Duzib170G0133' => 'dzi', 'ECA234G1433' => 'eca', 'ECA236G1432' => 'eca', 'ECA236G2256' => 'eca', 'ECA236G2365' => 'eca', 'ECA236G4830' => 'eca', 'ECA248G1505' => 'eca', 'EL10Ac3g06431' => 'bvu', 'EL10Ac5g12577' => 'bvu', 'EL10Ac6g13533' => 'bvu', 'EL10Ac7g16045' => 'bvu', 'Eucgr.A01281' => 'egr', 'Eucgr.B02326' => 'egr', 'Eucgr.H03532' => 'egr', 'Eucgr.K00553' => 'egr', 'Eucgr.K03116' => 'egr', 'FAN02G3963' => 'fan', 'FAN05G0438' => 'fan', 'FAN09G2434' => 'fan', 'FAN12G3984' => 'fan', 'FAN14G0798' => 'fan', 'FAN17G0652' => 'fan', 'FAN19G1988' => 'fan', 'FAN22G0632' => 'fan', 'FAN23G0387' => 'fan', 'FAN26G1323' => 'fan', 'FAN28G0666' => 'fan', 'FvH4_1g26080' => 'fve', 'FvH4_3g36780' => 'fve', 'FvH4_4g15270' => 'fve', 'FvH4_6g13490' => 'fve', 'Glyma.01G098700' => 'gma', 'Glyma.03G065900' => 'gma', 'Glyma.03G073754' => 'gma', 'Glyma.03G073758' => 'gma', 'Glyma.03G083200' => 'gma', 'Glyma.03G225500' => 'gma', 'Glyma.05G037766' => 'gma', 'Glyma.07G133500' => 'gma', 'Glyma.10G139400' => 'gma', 'Glyma.10G248900' => 'gma', 'Glyma.11G137800' => 'gma', 'Glyma.12G061300' => 'gma', 'Glyma.13G337900' => 'gma', 'Glyma.15G036600' => 'gma', 'Glyma.18G182800' => 'gma', 'Glyma.19G222500' => 'gma', 'Glyma.20G144800' => 'gma', 'Gohir.A01G222000' => 'ghi', 'Gohir.A03G044000' => 'ghi', 'Gohir.A03G044100' => 'ghi', 'Gohir.A04G083100' => 'ghi', 'Gohir.A07G127200' => 'ghi', 'Gohir.A07G132400' => 'ghi', 'Gohir.A08G000700' => 'ghi', 'Gohir.A11G327300' => 'ghi', 'Gohir.D01G211500' => 'ghi', 'Gohir.D03G123400' => 'ghi', 'Gohir.D03G123500' => 'ghi', 'Gohir.D04G121800' => 'ghi', 'Gohir.D07G131500' => 'ghi', 'Gohir.D07G136600' => 'ghi', 'Gohir.D08G011600' => 'ghi', 'Gohir.D11G346200' => 'ghi', 'Gorai.001G142800' => 'gra', 'Gorai.001G148700' => 'gra', 'Gorai.002G257300' => 'gra', 'Gorai.003G130000' => 'gra', 'Gorai.003G130100' => 'gra', 'Gorai.004G005300' => 'gra', 'Gorai.007G376500' => 'gra', 'Gorai.012G104700' => 'gra', 'GSVIVG01017946001' => 'vvi', 'GSVIVG01024928001' => 'vvi', 'GSVIVG01028227001' => 'vvi', 'GSVIVG01034151001' => 'vvi', 'HanXRQChr05g0135031' => 'han', 'HanXRQChr05g0135041' => 'han', 'HanXRQChr05g0140021' => 'han', 'HanXRQChr06g0178981' => 'han', 'HanXRQChr07g0188251' => 'han', 'HanXRQChr08g0235311' => 'han', 'HanXRQChr09g0271011' => 'han', 'HanXRQChr10g0293321' => 'han', 'HanXRQChr13g0388171' => 'han', 'Haze_00916' => 'cav', 'Haze_05063' => 'cav', 'Haze_20814' => 'cav', 'Haze_24128' => 'cav', 'Hma1.2p1_0745F.1_g212010' => 'hma', 'Hma1.2p1_0757F.1_g213260' => 'hma', 'Hma1.2p1_0936F.1_g238840' => 'hma', 'Hma1.2p1_1735F.1_g299890' => 'hma', 'Hma1.2p1_1861F.1_g305685' => 'hma', 'HPP92_003397' => 'vpl', 'HPP92_012597' => 'vpl', 'HPP92_015520' => 'vpl', 'HPP92_015539' => 'vpl', 'HPP92_020373' => 'vpl', 'Hund04938' => 'sun', 'Hund10677' => 'sun', 'Hund11033' => 'sun', 'Hund12155' => 'sun', 'Lalb_Chr01g0022551' => 'lal', 'Lalb_Chr03g0042341' => 'lal', 'Lalb_Chr07g0192931' => 'lal', 'Lalb_Chr12g0209551' => 'lal', 'Lalb_Chr19g0125251' => 'lal', 'Lalb_Chr19g0137891' => 'lal', 'Lalb_Chr21g0304641' => 'lal', 'Lalb_Chr21g0309881' => 'lal', 'Lj1A5T12' => 'lonja', 'Lj1C148G10' => 'lonja', 'Lj2A93T83' => 'lonja', 'Lj3A738G68' => 'lonja', 'Lj3C966T1' => 'lonja', 'Lj3g0018958' => 'lja', 'Lj3g0021831' => 'lja', 'Lj3g0025443' => 'lja', 'Lj4g0026809' => 'lja', 'Lj5g0012558' => 'lja', 'Lj5g0021586' => 'lja', 'Lsat_1_v5_gn_5_156840' => 'lsa', 'Lsat_1_v5_gn_8_73460' => 'lsa', 'Lsat_1_v5_gn_8_73481' => 'lsa', 'Lsat_1_v5_gn_9_31601' => 'lsa', 'Lsat_1_v5_gn_9_77320' => 'lsa', 'Manes.01G171300' => 'mes', 'Manes.01G171400' => 'mes', 'Manes.01G236100' => 'mes', 'Manes.02G130500' => 'mes', 'Manes.02G130600' => 'mes', 'Manes.03G180200' => 'mes', 'Manes.05G007000' => 'mes', 'Manes.08G084400' => 'mes', 'Manes.09G092600' => 'mes', 'Manes.15G027900' => 'mes', 'MBI04_g40948_MAGBIO' => 'mbi', 'MBI14_g12123_MAGBIO' => 'mbi', 'MBI18_g28915_MAGBIO' => 'mbi', 'MCO09G053' => 'mco', 'MCO11G782' => 'mco', 'MCO15G215' => 'mco', 'MD03G1088500' => 'mdo', 'MD03G1088600' => 'mdo', 'MD04G1130800' => 'mdo', 'MD09G1291700' => 'mdo', 'MD11G1097500' => 'mdo', 'MD11G1097600' => 'mdo', 'MD12G1143900' => 'mdo', 'MD13G1191400' => 'mdo', 'MD16G1191500' => 'mdo', 'Medtr1g085570' => 'mtr', 'Medtr1g104610' => 'mtr', 'Medtr2g097520' => 'mtr', 'Medtr4g021800' => 'mtr', 'Medtr4g021825' => 'mtr', 'Medtr4g064270' => 'mtr', 'Medtr4g064380' => 'mtr', 'Medtr7g062150' => 'mtr', 'MELO3C003138.2' => 'cme', 'MELO3C005187.2' => 'cme', 'MELO3C009252.2' => 'cme', 'MELO3C014481.2' => 'cme', 'MELO3C020616.2' => 'cme', 'MELO3C020617.2' => 'cme', 'MELO3C020618.2' => 'cme', 'Migut.G00328' => 'egut', 'Migut.J00320' => 'egut', 'Migut.L01000' => 'egut', 'Migut.L01953' => 'egut', 'MSTRG.10253' => 'ama', 'MSTRG.19077' => 'ama', 'MSTRG.26780' => 'ama', 'MSTRG.4023' => 'ama', 'MSTRG.5655' => 'ama', 'MSTRG.9992' => 'ama', 'Nitab4.5_0000043g0310' => 'nta', 'Nitab4.5_0000463g0080' => 'nta', 'Nitab4.5_0000705g0170' => 'nta', 'Nitab4.5_0001326g0060' => 'nta', 'Nitab4.5_0001628g0030' => 'nta', 'Nitab4.5_0002103g0110' => 'nta', 'Nitab4.5_0002946g0030' => 'nta', 'Nitab4.5_0004639g0030' => 'nta', 'Nn2g11149' => 'nnu', 'Nn2g13389' => 'nnu', 'Nn4g25326' => 'nnu', 'Nn4g26290' => 'nnu', 'Nn5g29865' => 'nnu', 'Oeu004163.1' => 'oeu', 'Oeu006901.1' => 'oeu', 'Oeu010096.1' => 'oeu', 'Oeu024340.1' => 'oeu', 'Oeu048369.1' => 'oeu', 'Os01g0973000' => 'osa', 'Os03g0273800' => 'osa', 'Os03g0701200' => 'osa', 'Os03g0834050' => 'osa', 'Os07g0634400' => 'osa', 'Peaxi162Scf00092g01414' => 'pax', 'Peaxi162Scf00165g00818' => 'pax', 'Peaxi162Scf00309g00516' => 'pax', 'Peaxi162Scf00774g00218' => 'pax', 'PGR004G1824' => 'pgr', 'PGR004G2606' => 'pgr', 'PGR031G2716' => 'pgr', 'PGR102G2460' => 'pgr', 'PGR142G2599' => 'pgr', 'PGSC0003DMG400000843' => 'stu', 'PGSC0003DMG400008829' => 'stu', 'PGSC0003DMG400030418' => 'stu', 'PGSC0003DMG400031834' => 'stu', 'PGSC0003DMG401028300' => 'stu', 'PGSC0003DMG402028300' => 'stu', 'Phvul.001G219300' => 'pvu', 'Phvul.007G056000' => 'pvu', 'Phvul.007G208000' => 'pvu', 'Phvul.008G119500' => 'pvu', 'Phvul.010G011200' => 'pvu', 'Phvul.010G014800' => 'pvu', 'Phvul.011G062900' => 'pvu', 'Phvul.L007043' => 'pvu', 'Potri.001G242300' => 'ptr', 'Potri.002G185300' => 'ptr', 'Potri.006G086900' => 'ptr', 'Potri.008G151700' => 'ptr', 'Potri.009G033500' => 'ptr', 'Potri.010G089300' => 'ptr', 'Potri.014G110800' => 'ptr', 'Pp3c27_8130' => 'ppa', 'Pp3c6_27410' => 'ppa', 'PRCOL_00001659' => 'pco', 'PRCOL_00001927' => 'pco', 'PRCOL_00003649' => 'pco', 'Prupe.1G011600' => 'ppe', 'Prupe.3G000800' => 'ppe', 'Prupe.3G001100' => 'ppe', 'Prupe.6G072700' => 'ppe', 'Prupe.6G072800' => 'ppe', 'Prupe.6G257300' => 'ppe', 'Prupe.8G033000' => 'ppe', 'Psat0s2633g0080' => 'psa', 'Psat0s3396g0080' => 'psa', 'Psat0s3396g0200' => 'psa', 'Psat3g139080' => 'psa', 'Psat5g285080' => 'psa', 'Psat6g157760' => 'psa', 'Psat6g208440' => 'psa', 'Psat7g215320' => 'psa', 'Psat7g215400' => 'psa', 'Psat7g235600' => 'psa', 'Psat7g235760' => 'psa', 'PSO063G4603' => 'pso', 'PSO210G0182' => 'pso', 'PSO210G0196' => 'pso', 'PSO339G0394' => 'pso', 'PSO339G4127' => 'pso', 'PSO513G0064' => 'pso', 'PSO761G0079' => 'pso', 'QL01p031003' => 'qlo', 'QL01p031078' => 'qlo', 'QL06p003004' => 'qlo', 'QL07p048731' => 'qlo', 'QL09p037427' => 'qlo', 'RcHm_v2.0_Chr3g0466361' => 'rch', 'RcHm_v2.0_Chr3g0485571' => 'rch', 'RcHm_v2.0_Chr4g0416551' => 'rch', 'RcHm_v2.0_Chr5g0065831' => 'rch', 'Rhsim01G0230500' => 'rsi', 'Rhsim05G0194000' => 'rsi', 'Rhsim08G0250400' => 'rsi', 'Sabra02G0131000' => 'sbr', 'Sabra06G0066300' => 'sbr', 'Sabra08G0115500' => 'sbr', 'Sabra09G0023900' => 'sbr', 'Sabra10G0054000' => 'sbr', 'Sabra14G0081500' => 'sbr', 'Sabra16G0147100' => 'sbr', 'SalBow2G2957' => 'sbo', 'SalBow4G3320' => 'sbo', 'SalBow8G1894' => 'sbo', 'Sc07g0007950' => 'sci', 'Sc12g0001360' => 'sci', 'Sc13g0004330' => 'sci', 'Sc20g0005010' => 'sci', 'Sed0000361' => 'sed', 'Sed0001706' => 'sed', 'Sed0002422' => 'sed', 'Sed0004029' => 'sed', 'Sed0004602' => 'sed', 'Sed0004943' => 'sed', 'Sed0008646' => 'sed', 'Sed0023313' => 'sed', 'Sed0024843' => 'sed', 'SEGI_00081' => 'sgi', 'SEGI_00947' => 'sgi', 'SEGI_04046' => 'sgi', 'SEGI_06880' => 'sgi', 'SEGI_09736' => 'sgi', 'SEGI_12741' => 'sgi', 'SEGI_14530' => 'sgi', 'SEGI_20705' => 'sgi', 'SEGI_26088' => 'sgi', 'SEGI_28323' => 'sgi', 'SEGI_33343' => 'sgi', 'SGA_v2.0_scaffold126G33775' => 'sas', 'SGA_v2.0_scaffold2G01337' => 'sas', 'SGA_v2.0_scaffold38G15006' => 'sas', 'SGA_v2.0_scaffold39G15264' => 'sas', 'SGA_v2.0_scaffold453G51880' => 'sas', 'SHI12696' => 'shi', 'SMO367G1096' => 'smo', 'Solyc01g068630.3' => 'sly', 'Solyc05g011880.3' => 'sly', 'Solyc06g076300.3' => 'sly', 'Solyc09g010940.4' => 'sly', 'Solyc09g075890.3' => 'sly', 'Sopen01g030560' => 'spe', 'Sopen05g006630' => 'spe', 'Sopen06g032720' => 'spe', 'Sopen09g005660' => 'spe', 'Sopen09g030690' => 'spe', 'Sp4g14540' => 'spa', 'Sp4g20030' => 'spa', 'Sp5g01320' => 'spa', 'Sp6g21170' => 'spa', 'Sp6g21180' => 'spa', 'Sp6g21190' => 'spa', 'Sp6g40220' => 'spa', 'TAR362G0122' => 'tar', 'TAR362G1338' => 'tar', 'TAR369G0590' => 'tar', 'TAR371G0824' => 'tar', 'TAR622G1429' => 'tar', 'TAR623G0734' => 'tar', 'TAR625G0441' => 'tar', 'TAR629G0976' => 'tar', 'TAR633G1195' => 'tar', 'TAR636G2660' => 'tar', 'THA.LOC104799440' => 'tha', 'THA.LOC104800966' => 'tha', 'THA.LOC104806559' => 'tha', 'THA.LOC104810765' => 'tha', 'THA.LOC104816266' => 'tha', 'THA.LOC104817419' => 'tha', 'THA.LOC104827021' => 'tha', 'Thecc.01G327400' => 'tca', 'Thecc.04G229200' => 'tca', 'Thecc.05G037400' => 'tca', 'Thecc.09G318600' => 'tca', 'Thecc.09G318700' => 'tca', 'Thhalv10006238m.g' => 'esa', 'Thhalv10014321m.g' => 'esa', 'Thhalv10014335m.g' => 'esa', 'Thhalv10015826m.g' => 'esa', 'Thhalv10017107m.g' => 'esa', 'Thhalv10017180m.g' => 'esa', 'Thhalv10029339m.g' => 'esa', 'TPR.G1699' => 'tpr', 'TPR.G23609' => 'tpr', 'TPR.G3081' => 'tpr', 'TPR.G40397' => 'tpr', 'TPR.G5522' => 'tpr', 'TPR.G5618' => 'tpr', 'TPR.G5626' => 'tpr', 'TWI09G1632' => 'twi', 'TWI23G1230' => 'twi', 'TWI53G1064' => 'twi', 'TWI59G0751' => 'twi', 'TWI74G0947' => 'twi', 'TWI77G0337' => 'twi', 'TWI79G1254' => 'twi', 'unitig_0.g2341' => 'ugi', 'unitig_26.g10006' => 'ugi', 'unitig_26.g10008' => 'ugi', 'unitig_26.g9192' => 'ugi', 'vmacro14547' => 'vma', 'vmacro15333' => 'vma', 'vmacro18743' => 'vma', 'vmacro20166' => 'vma', 'VMungo0331G0523' => 'vmu', 'VMungo0331G1202' => 'vmu', 'VMungo0720G1228' => 'vmu', 'VMungo0720G1514' => 'vmu', 'VMungo1080G0169' => 'vmu', 'VMungo1127G1475' => 'vmu', 'VMungo1383G1208' => 'vmu', 'VMungo1383G1698' => 'vmu', 'Zm00001eb012270' => 'zma', 'Zm00001eb054100' => 'zma', 'Zm00001eb063350' => 'zma', 'Zm00001eb328560' => 'zma', 'Zm00001eb342820' => 'zma', 'Zm00001eb362210' => 'zma', 'Zm00001eb397730' => 'zma', 'Zm00001eb399750' => 'zma' ), 'gf_id' => 'HOM05D000959', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000959' ), 'data_identifier' => 'HOM05D000959', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000959', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '622', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p07100' => 'bna', 'A03p11720' => 'bna', 'A05p08300' => 'bna', 'A05p13380' => 'bna', 'A09p54130' => 'bna', 'A10p16690' => 'bna', 'A10p16700' => 'bna', 'A10p33390' => 'bna', 'Aa31LG10G16020' => 'aar', 'Aa31LG1G11810' => 'aar', 'Aa31LG1G11830' => 'aar', 'Aa31LG1G22510' => 'aar', 'Aa31LG5G4890' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5793' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2310' => 'aag', 'Actinidia08499' => 'ach', 'Actinidia11262' => 'ach', 'Actinidia23926' => 'ach', 'Actinidia34420' => 'ach', 'Actinidia36970' => 'ach', 'Ah.02g111220' => 'amhyb', 'Ah.15g097750' => 'amhyb', 'AL4G27500' => 'aly', 'AL6G11470' => 'aly', 'AL8G35950' => 'aly', 'AL8G35960' => 'aly', 'AL8G35970' => 'aly', 'Aqoxy1G00912' => 'aox', 'Aqoxy2G02253' => 'aox', 'Aqoxy2G02411' => 'aox', 'Aqoxy5G00485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BZ66YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K8ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM4FUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6BF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HFV7XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25JBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0YNNV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MAKK6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P70IT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP2Z6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V61LZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YWP64R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3S9AI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7PGHH' => 'arhy', 'AT2G32150' => 'ath', 'AT3G62040' => 'ath', 'AT5G02230' => 'ath', 'AT5G59480' => 'ath', 'AT5G59490' => 'ath', 'ATR0332G060' => 'atr', 'ATR0559G190' => 'atr', 'ATR0693G294' => 'atr', 'Atru.chr3.3975' => 'acertr', 'Atru.chr3.3976' => 'acertr', 'Atru.chr3.3977' => 'acertr', 'Atru.chr4.2498' => 'acertr', 'Atru.chr5.838' => 'acertr', 'Atru.chr8.1990' => 'acertr', 'Atru.chr8.1991' => 'acertr', 'Atru.chr8.1992' => 'acertr', 'AUR62001759' => 'cqu', 'AUR62009545' => 'cqu', 'AUR62010474' => 'cqu', 'AUR62025820' => 'cqu', 'AUR62030422' => 'cqu', 'AUR62033605' => 'cqu', 'AUR62038615' => 'cqu', 'AUR62041347' => 'cqu', 'BcaB01g04574' => 'bca', 'BcaB02g09263' => 'bca', 'BcaB02g10453' => 'bca', 'BcaB05g22513' => 'bca', 'BcaB08g36253' => 'bca', 'BcaB08g36254' => 'bca', 'BcaC01g06519' => 'bca', 'BcaC02g11889' => 'bca', 'BcaC03g14010' => 'bca', 'BcaC03g18439' => 'bca', 'BcaC04g19765' => 'bca', 'BcaC09g48432' => 'bca', 'BcaNung07302' => 'bca', 'BolC2t06040H' => 'bol', 'BolC2t07346H' => 'bol', 'BolC3t13817H' => 'bol', 'BolC4t22625H' => 'bol', 'BolC4t23297H' => 'bol', 'BolC8t51278H' => 'bol', 'BolC9t58050H' => 'bol', 'BolC9t58051H' => 'bol', 'BolC9t60163H' => 'bol', 'BraA02t04712Z' => 'bra', 'BraA02t05791Z' => 'bra', 'BraA03t10483Z' => 'bra', 'BraA05t19795Z' => 'bra', 'BraA05t20276Z' => 'bra', 'BraA09t40827Z' => 'bra', 'BraA10t43750Z' => 'bra', 'BraA10t43751Z' => 'bra', 'BraA10t45370Z' => 'bra', 'C02p00400' => 'bna', 'C02p12460' => 'bna', 'C03p13680' => 'bna', 'C04p10270' => 'bna', 'C04p17500' => 'bna', 'C08p37010' => 'bna', 'C09p51880' => 'bna', 'C09p51890' => 'bna', 'C09p74300' => 'bna', 'CAN.G179.26' => 'can', 'CAN.G3384.1' => 'can', 'CAN.G394.68' => 'can', 'CAN.G907.13' => 'can', 'CANSAT11G0012' => 'cansat', 'CANSAT25G1586' => 'cansat', 'CANSAT35G0735' => 'cansat', 'CANSAT54G0556' => 'cansat', 'CANSAT64G0356' => 'cansat', 'CANSAT78G2042' => 'cansat', 'CARHR125920' => 'chi', 'CARHR131910' => 'chi', 'CARHR172390' => 'chi', 'CARHR211140' => 'chi', 'CARHR285850' => 'chi', 'CARHR285860' => 'chi', 'Carub.0004s1347' => 'cru', 'Carub.0004s1960' => 'cru', 'Carub.0005s2880' => 'cru', 'Carub.0006s0107' => 'cru', 'Carub.0008s2015' => 'cru', 'Carub.0008s2016' => 'cru', 'Carub.0008s2017' => 'cru', 'Ca_01315_v3' => 'car', 'Ca_05063_v3' => 'car', 'Ca_10231_v3' => 'car', 'Ca_10913_v3' => 'car', 'Ca_19156_v3' => 'car', 'Ca_23644_v3' => 'car', 'Ca_26735_v3' => 'car', 'Cc01_g13130' => 'ccan', 'Cc02_g21690' => 'ccan', 'Cc03_g03600' => 'ccan', 'Cc06_g02510' => 'ccan', 'CDE02G1265' => 'cde', 'CDE05G0415' => 'cde', 'CDE08G1082' => 'cde', 'Cfa005780' => 'cfa', 'Cfa011522' => 'cfa', 'Cfa011523' => 'cfa', 'Cfa015627' => 'cfa', 'Cfa017359' => 'cfa', 'Ciclev10005687m.g' => 'ccl', 'Ciclev10012173m.g' => 'ccl', 'Ciclev10021621m.g' => 'ccl', 'Ciclev10028968m.g' => 'ccl', 'Ciclev10029907m.g' => 'ccl', 'CiPaw.01G164800' => 'cil', 'CiPaw.07G083700' => 'cil', 'CiPaw.07G127000' => 'cil', 'CiPaw.07G136900' => 'cil', 'CiPaw.08G081700' => 'cil', 'CiPaw.09G194600' => 'cil', 'CiPaw.10G146500' => 'cil', 'CiPaw.13G091500' => 'cil', 'CiPaw.13G091600' => 'cil', 'ClCG00G003390' => 'cla', 'ClCG01G007220' => 'cla', 'ClCG03G001370' => 'cla', 'ClCG04G008100' => 'cla', 'ClCG06G006110' => 'cla', 'ClCG06G006130' => 'cla', 'ClCG10G021210' => 'cla', 'COL.COLO4_07648' => 'col', 'COL.COLO4_07650' => 'col', 'COL.COLO4_07651' => 'col', 'COL.COLO4_14780' => 'col', 'COL.COLO4_18546' => 'col', 'COL.COLO4_18547' => 'col', 'COL.COLO4_23103' => 'col', 'COL.COLO4_30419' => 'col', 'COL.COLO4_34232' => 'col', 'Cpa.g.sc169.20' => 'cpa', 'Cpa.g.sc57.45' => 'cpa', 'Cpa.g.sc58.124' => 'cpa', 'Cpa.g.sc58.125' => 'cpa', 'Cpa.g.sc81.118' => 'cpa', 'Cpa.g.sc81.119' => 'cpa', 'Cre12.g524700' => 'cre', 'CsaV3_1G034430' => 'csa', 'CsaV3_1G034440' => 'csa', 'CsaV3_1G034450' => 'csa', 'CsaV3_3G034830' => 'csa', 'CsaV3_4G025090' => 'csa', 'CsaV3_5G018660' => 'csa', 'CsaV3_6G038160' => 'csa', 'CSS0003447' => 'camsi', 'CSS0017840' => 'camsi', 'CSS0019260' => 'camsi', 'CSS0040375' => 'camsi', 'CSS0042533' => 'camsi', 'DCAR_005960' => 'dca', 'DCAR_012104' => 'dca', 'DCAR_012105' => 'dca', 'DCAR_012293' => 'dca', 'DCAR_015632' => 'dca', 'DCAR_024602' => 'dca', 'DCAR_028752' => 'dca', 'Dinv06261' => 'din', 'Dinv13982' => 'din', 'Dinv17029' => 'din', 'Dinv18463' => 'din', 'Dinv33181' => 'din', 'Dinv35585' => 'din', 'Dinv37161' => 'din', 'Dinv42977' => 'din', 'Dinv43122' => 'din', 'Dinv44517' => 'din', 'Duzib093G0256' => 'dzi', 'Duzib106G1254' => 'dzi', 'Duzib128G1789' => 'dzi', 'Duzib133G0633' => 'dzi', 'Duzib138G0510' => 'dzi', 'Duzib150G1084' => 'dzi', 'Duzib168G0488' => 'dzi', 'Duzib168G1523' => 'dzi', 'Duzib170G0133' => 'dzi', 'ECA234G1433' => 'eca', 'ECA236G1432' => 'eca', 'ECA236G2256' => 'eca', 'ECA236G2365' => 'eca', 'ECA236G4830' => 'eca', 'ECA248G1505' => 'eca', 'EL10Ac3g06431' => 'bvu', 'EL10Ac5g12577' => 'bvu', 'EL10Ac6g13533' => 'bvu', 'EL10Ac7g16045' => 'bvu', 'Eucgr.A01281' => 'egr', 'Eucgr.B02326' => 'egr', 'Eucgr.H03532' => 'egr', 'Eucgr.K00553' => 'egr', 'Eucgr.K03116' => 'egr', 'FAN02G3963' => 'fan', 'FAN05G0438' => 'fan', 'FAN09G2434' => 'fan', 'FAN12G3984' => 'fan', 'FAN14G0798' => 'fan', 'FAN17G0652' => 'fan', 'FAN19G1988' => 'fan', 'FAN22G0632' => 'fan', 'FAN23G0387' => 'fan', 'FAN26G1323' => 'fan', 'FAN28G0666' => 'fan', 'FvH4_1g26080' => 'fve', 'FvH4_3g36780' => 'fve', 'FvH4_4g15270' => 'fve', 'FvH4_6g13490' => 'fve', 'Glyma.01G098700' => 'gma', 'Glyma.03G065900' => 'gma', 'Glyma.03G073754' => 'gma', 'Glyma.03G073758' => 'gma', 'Glyma.03G083200' => 'gma', 'Glyma.03G225500' => 'gma', 'Glyma.05G037766' => 'gma', 'Glyma.07G133500' => 'gma', 'Glyma.10G139400' => 'gma', 'Glyma.10G248900' => 'gma', 'Glyma.11G137800' => 'gma', 'Glyma.12G061300' => 'gma', 'Glyma.13G337900' => 'gma', 'Glyma.15G036600' => 'gma', 'Glyma.18G182800' => 'gma', 'Glyma.19G222500' => 'gma', 'Glyma.20G144800' => 'gma', 'Gohir.A01G222000' => 'ghi', 'Gohir.A03G044000' => 'ghi', 'Gohir.A03G044100' => 'ghi', 'Gohir.A04G083100' => 'ghi', 'Gohir.A07G127200' => 'ghi', 'Gohir.A07G132400' => 'ghi', 'Gohir.A08G000700' => 'ghi', 'Gohir.A11G327300' => 'ghi', 'Gohir.D01G211500' => 'ghi', 'Gohir.D03G123400' => 'ghi', 'Gohir.D03G123500' => 'ghi', 'Gohir.D04G121800' => 'ghi', 'Gohir.D07G131500' => 'ghi', 'Gohir.D07G136600' => 'ghi', 'Gohir.D08G011600' => 'ghi', 'Gohir.D11G346200' => 'ghi', 'Gorai.001G142800' => 'gra', 'Gorai.001G148700' => 'gra', 'Gorai.002G257300' => 'gra', 'Gorai.003G130000' => 'gra', 'Gorai.003G130100' => 'gra', 'Gorai.004G005300' => 'gra', 'Gorai.007G376500' => 'gra', 'Gorai.012G104700' => 'gra', 'GSVIVG01017946001' => 'vvi', 'GSVIVG01024928001' => 'vvi', 'GSVIVG01028227001' => 'vvi', 'GSVIVG01034151001' => 'vvi', 'HanXRQChr05g0135031' => 'han', 'HanXRQChr05g0135041' => 'han', 'HanXRQChr05g0140021' => 'han', 'HanXRQChr06g0178981' => 'han', 'HanXRQChr07g0188251' => 'han', 'HanXRQChr08g0235311' => 'han', 'HanXRQChr09g0271011' => 'han', 'HanXRQChr10g0293321' => 'han', 'HanXRQChr13g0388171' => 'han', 'Haze_00916' => 'cav', 'Haze_05063' => 'cav', 'Haze_20814' => 'cav', 'Haze_24128' => 'cav', 'Hma1.2p1_0745F.1_g212010' => 'hma', 'Hma1.2p1_0757F.1_g213260' => 'hma', 'Hma1.2p1_0936F.1_g238840' => 'hma', 'Hma1.2p1_1735F.1_g299890' => 'hma', 'Hma1.2p1_1861F.1_g305685' => 'hma', 'HPP92_003397' => 'vpl', 'HPP92_012597' => 'vpl', 'HPP92_015520' => 'vpl', 'HPP92_015539' => 'vpl', 'HPP92_020373' => 'vpl', 'Hund04938' => 'sun', 'Hund10677' => 'sun', 'Hund11033' => 'sun', 'Hund12155' => 'sun', 'Lalb_Chr01g0022551' => 'lal', 'Lalb_Chr03g0042341' => 'lal', 'Lalb_Chr07g0192931' => 'lal', 'Lalb_Chr12g0209551' => 'lal', 'Lalb_Chr19g0125251' => 'lal', 'Lalb_Chr19g0137891' => 'lal', 'Lalb_Chr21g0304641' => 'lal', 'Lalb_Chr21g0309881' => 'lal', 'Lj1A5T12' => 'lonja', 'Lj1C148G10' => 'lonja', 'Lj2A93T83' => 'lonja', 'Lj3A738G68' => 'lonja', 'Lj3C966T1' => 'lonja', 'Lj3g0018958' => 'lja', 'Lj3g0021831' => 'lja', 'Lj3g0025443' => 'lja', 'Lj4g0026809' => 'lja', 'Lj5g0012558' => 'lja', 'Lj5g0021586' => 'lja', 'Lsat_1_v5_gn_5_156840' => 'lsa', 'Lsat_1_v5_gn_8_73460' => 'lsa', 'Lsat_1_v5_gn_8_73481' => 'lsa', 'Lsat_1_v5_gn_9_31601' => 'lsa', 'Lsat_1_v5_gn_9_77320' => 'lsa', 'Manes.01G171300' => 'mes', 'Manes.01G171400' => 'mes', 'Manes.01G236100' => 'mes', 'Manes.02G130500' => 'mes', 'Manes.02G130600' => 'mes', 'Manes.03G180200' => 'mes', 'Manes.05G007000' => 'mes', 'Manes.08G084400' => 'mes', 'Manes.09G092600' => 'mes', 'Manes.15G027900' => 'mes', 'MBI04_g40948_MAGBIO' => 'mbi', 'MBI14_g12123_MAGBIO' => 'mbi', 'MBI18_g28915_MAGBIO' => 'mbi', 'MCO09G053' => 'mco', 'MCO11G782' => 'mco', 'MCO15G215' => 'mco', 'MD03G1088500' => 'mdo', 'MD03G1088600' => 'mdo', 'MD04G1130800' => 'mdo', 'MD09G1291700' => 'mdo', 'MD11G1097500' => 'mdo', 'MD11G1097600' => 'mdo', 'MD12G1143900' => 'mdo', 'MD13G1191400' => 'mdo', 'MD16G1191500' => 'mdo', 'Medtr1g085570' => 'mtr', 'Medtr1g104610' => 'mtr', 'Medtr2g097520' => 'mtr', 'Medtr4g021800' => 'mtr', 'Medtr4g021825' => 'mtr', 'Medtr4g064270' => 'mtr', 'Medtr4g064380' => 'mtr', 'Medtr7g062150' => 'mtr', 'MELO3C003138.2' => 'cme', 'MELO3C005187.2' => 'cme', 'MELO3C009252.2' => 'cme', 'MELO3C014481.2' => 'cme', 'MELO3C020616.2' => 'cme', 'MELO3C020617.2' => 'cme', 'MELO3C020618.2' => 'cme', 'Migut.G00328' => 'egut', 'Migut.J00320' => 'egut', 'Migut.L01000' => 'egut', 'Migut.L01953' => 'egut', 'MSTRG.10253' => 'ama', 'MSTRG.19077' => 'ama', 'MSTRG.26780' => 'ama', 'MSTRG.4023' => 'ama', 'MSTRG.5655' => 'ama', 'MSTRG.9992' => 'ama', 'Nitab4.5_0000043g0310' => 'nta', 'Nitab4.5_0000463g0080' => 'nta', 'Nitab4.5_0000705g0170' => 'nta', 'Nitab4.5_0001326g0060' => 'nta', 'Nitab4.5_0001628g0030' => 'nta', 'Nitab4.5_0002103g0110' => 'nta', 'Nitab4.5_0002946g0030' => 'nta', 'Nitab4.5_0004639g0030' => 'nta', 'Nn2g11149' => 'nnu', 'Nn2g13389' => 'nnu', 'Nn4g25326' => 'nnu', 'Nn4g26290' => 'nnu', 'Nn5g29865' => 'nnu', 'Oeu004163.1' => 'oeu', 'Oeu006901.1' => 'oeu', 'Oeu010096.1' => 'oeu', 'Oeu024340.1' => 'oeu', 'Oeu048369.1' => 'oeu', 'Os01g0973000' => 'osa', 'Os03g0273800' => 'osa', 'Os03g0701200' => 'osa', 'Os03g0834050' => 'osa', 'Os07g0634400' => 'osa', 'Peaxi162Scf00092g01414' => 'pax', 'Peaxi162Scf00165g00818' => 'pax', 'Peaxi162Scf00309g00516' => 'pax', 'Peaxi162Scf00774g00218' => 'pax', 'PGR004G1824' => 'pgr', 'PGR004G2606' => 'pgr', 'PGR031G2716' => 'pgr', 'PGR102G2460' => 'pgr', 'PGR142G2599' => 'pgr', 'PGSC0003DMG400000843' => 'stu', 'PGSC0003DMG400008829' => 'stu', 'PGSC0003DMG400030418' => 'stu', 'PGSC0003DMG400031834' => 'stu', 'PGSC0003DMG401028300' => 'stu', 'PGSC0003DMG402028300' => 'stu', 'Phvul.001G219300' => 'pvu', 'Phvul.007G056000' => 'pvu', 'Phvul.007G208000' => 'pvu', 'Phvul.008G119500' => 'pvu', 'Phvul.010G011200' => 'pvu', 'Phvul.010G014800' => 'pvu', 'Phvul.011G062900' => 'pvu', 'Phvul.L007043' => 'pvu', 'Potri.001G242300' => 'ptr', 'Potri.002G185300' => 'ptr', 'Potri.006G086900' => 'ptr', 'Potri.008G151700' => 'ptr', 'Potri.009G033500' => 'ptr', 'Potri.010G089300' => 'ptr', 'Potri.014G110800' => 'ptr', 'Pp3c27_8130' => 'ppa', 'Pp3c6_27410' => 'ppa', 'PRCOL_00001659' => 'pco', 'PRCOL_00001927' => 'pco', 'PRCOL_00003649' => 'pco', 'Prupe.1G011600' => 'ppe', 'Prupe.3G000800' => 'ppe', 'Prupe.3G001100' => 'ppe', 'Prupe.6G072700' => 'ppe', 'Prupe.6G072800' => 'ppe', 'Prupe.6G257300' => 'ppe', 'Prupe.8G033000' => 'ppe', 'Psat0s2633g0080' => 'psa', 'Psat0s3396g0080' => 'psa', 'Psat0s3396g0200' => 'psa', 'Psat3g139080' => 'psa', 'Psat5g285080' => 'psa', 'Psat6g157760' => 'psa', 'Psat6g208440' => 'psa', 'Psat7g215320' => 'psa', 'Psat7g215400' => 'psa', 'Psat7g235600' => 'psa', 'Psat7g235760' => 'psa', 'PSO063G4603' => 'pso', 'PSO210G0182' => 'pso', 'PSO210G0196' => 'pso', 'PSO339G0394' => 'pso', 'PSO339G4127' => 'pso', 'PSO513G0064' => 'pso', 'PSO761G0079' => 'pso', 'QL01p031003' => 'qlo', 'QL01p031078' => 'qlo', 'QL06p003004' => 'qlo', 'QL07p048731' => 'qlo', 'QL09p037427' => 'qlo', 'RcHm_v2.0_Chr3g0466361' => 'rch', 'RcHm_v2.0_Chr3g0485571' => 'rch', 'RcHm_v2.0_Chr4g0416551' => 'rch', 'RcHm_v2.0_Chr5g0065831' => 'rch', 'Rhsim01G0230500' => 'rsi', 'Rhsim05G0194000' => 'rsi', 'Rhsim08G0250400' => 'rsi', 'Sabra02G0131000' => 'sbr', 'Sabra06G0066300' => 'sbr', 'Sabra08G0115500' => 'sbr', 'Sabra09G0023900' => 'sbr', 'Sabra10G0054000' => 'sbr', 'Sabra14G0081500' => 'sbr', 'Sabra16G0147100' => 'sbr', 'SalBow2G2957' => 'sbo', 'SalBow4G3320' => 'sbo', 'SalBow8G1894' => 'sbo', 'Sc07g0007950' => 'sci', 'Sc12g0001360' => 'sci', 'Sc13g0004330' => 'sci', 'Sc20g0005010' => 'sci', 'Sed0000361' => 'sed', 'Sed0001706' => 'sed', 'Sed0002422' => 'sed', 'Sed0004029' => 'sed', 'Sed0004602' => 'sed', 'Sed0004943' => 'sed', 'Sed0008646' => 'sed', 'Sed0023313' => 'sed', 'Sed0024843' => 'sed', 'SEGI_00081' => 'sgi', 'SEGI_00947' => 'sgi', 'SEGI_04046' => 'sgi', 'SEGI_06880' => 'sgi', 'SEGI_09736' => 'sgi', 'SEGI_12741' => 'sgi', 'SEGI_14530' => 'sgi', 'SEGI_20705' => 'sgi', 'SEGI_26088' => 'sgi', 'SEGI_28323' => 'sgi', 'SEGI_33343' => 'sgi', 'SGA_v2.0_scaffold126G33775' => 'sas', 'SGA_v2.0_scaffold2G01337' => 'sas', 'SGA_v2.0_scaffold38G15006' => 'sas', 'SGA_v2.0_scaffold39G15264' => 'sas', 'SGA_v2.0_scaffold453G51880' => 'sas', 'SHI12696' => 'shi', 'SMO367G1096' => 'smo', 'Solyc01g068630.3' => 'sly', 'Solyc05g011880.3' => 'sly', 'Solyc06g076300.3' => 'sly', 'Solyc09g010940.4' => 'sly', 'Solyc09g075890.3' => 'sly', 'Sopen01g030560' => 'spe', 'Sopen05g006630' => 'spe', 'Sopen06g032720' => 'spe', 'Sopen09g005660' => 'spe', 'Sopen09g030690' => 'spe', 'Sp4g14540' => 'spa', 'Sp4g20030' => 'spa', 'Sp5g01320' => 'spa', 'Sp6g21170' => 'spa', 'Sp6g21180' => 'spa', 'Sp6g21190' => 'spa', 'Sp6g40220' => 'spa', 'TAR362G0122' => 'tar', 'TAR362G1338' => 'tar', 'TAR369G0590' => 'tar', 'TAR371G0824' => 'tar', 'TAR622G1429' => 'tar', 'TAR623G0734' => 'tar', 'TAR625G0441' => 'tar', 'TAR629G0976' => 'tar', 'TAR633G1195' => 'tar', 'TAR636G2660' => 'tar', 'THA.LOC104799440' => 'tha', 'THA.LOC104800966' => 'tha', 'THA.LOC104806559' => 'tha', 'THA.LOC104810765' => 'tha', 'THA.LOC104816266' => 'tha', 'THA.LOC104817419' => 'tha', 'THA.LOC104827021' => 'tha', 'Thecc.01G327400' => 'tca', 'Thecc.04G229200' => 'tca', 'Thecc.05G037400' => 'tca', 'Thecc.09G318600' => 'tca', 'Thecc.09G318700' => 'tca', 'Thhalv10006238m.g' => 'esa', 'Thhalv10014321m.g' => 'esa', 'Thhalv10014335m.g' => 'esa', 'Thhalv10015826m.g' => 'esa', 'Thhalv10017107m.g' => 'esa', 'Thhalv10017180m.g' => 'esa', 'Thhalv10029339m.g' => 'esa', 'TPR.G1699' => 'tpr', 'TPR.G23609' => 'tpr', 'TPR.G3081' => 'tpr', 'TPR.G40397' => 'tpr', 'TPR.G5522' => 'tpr', 'TPR.G5618' => 'tpr', 'TPR.G5626' => 'tpr', 'TWI09G1632' => 'twi', 'TWI23G1230' => 'twi', 'TWI53G1064' => 'twi', 'TWI59G0751' => 'twi', 'TWI74G0947' => 'twi', 'TWI77G0337' => 'twi', 'TWI79G1254' => 'twi', 'unitig_0.g2341' => 'ugi', 'unitig_26.g10006' => 'ugi', 'unitig_26.g10008' => 'ugi', 'unitig_26.g9192' => 'ugi', 'vmacro14547' => 'vma', 'vmacro15333' => 'vma', 'vmacro18743' => 'vma', 'vmacro20166' => 'vma', 'VMungo0331G0523' => 'vmu', 'VMungo0331G1202' => 'vmu', 'VMungo0720G1228' => 'vmu', 'VMungo0720G1514' => 'vmu', 'VMungo1080G0169' => 'vmu', 'VMungo1127G1475' => 'vmu', 'VMungo1383G1208' => 'vmu', 'VMungo1383G1698' => 'vmu', 'Zm00001eb012270' => 'zma', 'Zm00001eb054100' => 'zma', 'Zm00001eb063350' => 'zma', 'Zm00001eb328560' => 'zma', 'Zm00001eb342820' => 'zma', 'Zm00001eb362210' => 'zma', 'Zm00001eb397730' => 'zma', 'Zm00001eb399750' => 'zma' ) $gf_id = 'HOM05D000959' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000959' ) $data_identifier = 'HOM05D000959' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 5, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 5, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 10, 'mbi' => (int) 3, 'mco' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 2, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 3, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 11, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399750' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000959', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '622', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p07100' => 'bna', 'A03p11720' => 'bna', 'A05p08300' => 'bna', 'A05p13380' => 'bna', 'A09p54130' => 'bna', 'A10p16690' => 'bna', 'A10p16700' => 'bna', 'A10p33390' => 'bna', 'Aa31LG10G16020' => 'aar', 'Aa31LG1G11810' => 'aar', 'Aa31LG1G11830' => 'aar', 'Aa31LG1G22510' => 'aar', 'Aa31LG5G4890' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5793' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2310' => 'aag', 'Actinidia08499' => 'ach', 'Actinidia11262' => 'ach', 'Actinidia23926' => 'ach', 'Actinidia34420' => 'ach', 'Actinidia36970' => 'ach', 'Ah.02g111220' => 'amhyb', 'Ah.15g097750' => 'amhyb', 'AL4G27500' => 'aly', 'AL6G11470' => 'aly', 'AL8G35950' => 'aly', 'AL8G35960' => 'aly', 'AL8G35970' => 'aly', 'Aqoxy1G00912' => 'aox', 'Aqoxy2G02253' => 'aox', 'Aqoxy2G02411' => 'aox', 'Aqoxy5G00485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BZ66YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K8ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM4FUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6BF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HFV7XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25JBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0YNNV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MAKK6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P70IT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP2Z6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V61LZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YWP64R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3S9AI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7PGHH' => 'arhy', 'AT2G32150' => 'ath', 'AT3G62040' => 'ath', 'AT5G02230' => 'ath', 'AT5G59480' => 'ath', 'AT5G59490' => 'ath', 'ATR0332G060' => 'atr', 'ATR0559G190' => 'atr', 'ATR0693G294' => 'atr', 'Atru.chr3.3975' => 'acertr', 'Atru.chr3.3976' => 'acertr', 'Atru.chr3.3977' => 'acertr', 'Atru.chr4.2498' => 'acertr', 'Atru.chr5.838' => 'acertr', 'Atru.chr8.1990' => 'acertr', 'Atru.chr8.1991' => 'acertr', 'Atru.chr8.1992' => 'acertr', 'AUR62001759' => 'cqu', 'AUR62009545' => 'cqu', 'AUR62010474' => 'cqu', 'AUR62025820' => 'cqu', 'AUR62030422' => 'cqu', 'AUR62033605' => 'cqu', 'AUR62038615' => 'cqu', 'AUR62041347' => 'cqu', 'BcaB01g04574' => 'bca', 'BcaB02g09263' => 'bca', 'BcaB02g10453' => 'bca', 'BcaB05g22513' => 'bca', 'BcaB08g36253' => 'bca', 'BcaB08g36254' => 'bca', 'BcaC01g06519' => 'bca', 'BcaC02g11889' => 'bca', 'BcaC03g14010' => 'bca', 'BcaC03g18439' => 'bca', 'BcaC04g19765' => 'bca', 'BcaC09g48432' => 'bca', 'BcaNung07302' => 'bca', 'BolC2t06040H' => 'bol', 'BolC2t07346H' => 'bol', 'BolC3t13817H' => 'bol', 'BolC4t22625H' => 'bol', 'BolC4t23297H' => 'bol', 'BolC8t51278H' => 'bol', 'BolC9t58050H' => 'bol', 'BolC9t58051H' => 'bol', 'BolC9t60163H' => 'bol', 'BraA02t04712Z' => 'bra', 'BraA02t05791Z' => 'bra', 'BraA03t10483Z' => 'bra', 'BraA05t19795Z' => 'bra', 'BraA05t20276Z' => 'bra', 'BraA09t40827Z' => 'bra', 'BraA10t43750Z' => 'bra', 'BraA10t43751Z' => 'bra', 'BraA10t45370Z' => 'bra', 'C02p00400' => 'bna', 'C02p12460' => 'bna', 'C03p13680' => 'bna', 'C04p10270' => 'bna', 'C04p17500' => 'bna', 'C08p37010' => 'bna', 'C09p51880' => 'bna', 'C09p51890' => 'bna', 'C09p74300' => 'bna', 'CAN.G179.26' => 'can', 'CAN.G3384.1' => 'can', 'CAN.G394.68' => 'can', 'CAN.G907.13' => 'can', 'CANSAT11G0012' => 'cansat', 'CANSAT25G1586' => 'cansat', 'CANSAT35G0735' => 'cansat', 'CANSAT54G0556' => 'cansat', 'CANSAT64G0356' => 'cansat', 'CANSAT78G2042' => 'cansat', 'CARHR125920' => 'chi', 'CARHR131910' => 'chi', 'CARHR172390' => 'chi', 'CARHR211140' => 'chi', 'CARHR285850' => 'chi', 'CARHR285860' => 'chi', 'Carub.0004s1347' => 'cru', 'Carub.0004s1960' => 'cru', 'Carub.0005s2880' => 'cru', 'Carub.0006s0107' => 'cru', 'Carub.0008s2015' => 'cru', 'Carub.0008s2016' => 'cru', 'Carub.0008s2017' => 'cru', 'Ca_01315_v3' => 'car', 'Ca_05063_v3' => 'car', 'Ca_10231_v3' => 'car', 'Ca_10913_v3' => 'car', 'Ca_19156_v3' => 'car', 'Ca_23644_v3' => 'car', 'Ca_26735_v3' => 'car', 'Cc01_g13130' => 'ccan', 'Cc02_g21690' => 'ccan', 'Cc03_g03600' => 'ccan', 'Cc06_g02510' => 'ccan', 'CDE02G1265' => 'cde', 'CDE05G0415' => 'cde', 'CDE08G1082' => 'cde', 'Cfa005780' => 'cfa', 'Cfa011522' => 'cfa', 'Cfa011523' => 'cfa', 'Cfa015627' => 'cfa', 'Cfa017359' => 'cfa', 'Ciclev10005687m.g' => 'ccl', 'Ciclev10012173m.g' => 'ccl', 'Ciclev10021621m.g' => 'ccl', 'Ciclev10028968m.g' => 'ccl', 'Ciclev10029907m.g' => 'ccl', 'CiPaw.01G164800' => 'cil', 'CiPaw.07G083700' => 'cil', 'CiPaw.07G127000' => 'cil', 'CiPaw.07G136900' => 'cil', 'CiPaw.08G081700' => 'cil', 'CiPaw.09G194600' => 'cil', 'CiPaw.10G146500' => 'cil', 'CiPaw.13G091500' => 'cil', 'CiPaw.13G091600' => 'cil', 'ClCG00G003390' => 'cla', 'ClCG01G007220' => 'cla', 'ClCG03G001370' => 'cla', 'ClCG04G008100' => 'cla', 'ClCG06G006110' => 'cla', 'ClCG06G006130' => 'cla', 'ClCG10G021210' => 'cla', 'COL.COLO4_07648' => 'col', 'COL.COLO4_07650' => 'col', 'COL.COLO4_07651' => 'col', 'COL.COLO4_14780' => 'col', 'COL.COLO4_18546' => 'col', 'COL.COLO4_18547' => 'col', 'COL.COLO4_23103' => 'col', 'COL.COLO4_30419' => 'col', 'COL.COLO4_34232' => 'col', 'Cpa.g.sc169.20' => 'cpa', 'Cpa.g.sc57.45' => 'cpa', 'Cpa.g.sc58.124' => 'cpa', 'Cpa.g.sc58.125' => 'cpa', 'Cpa.g.sc81.118' => 'cpa', 'Cpa.g.sc81.119' => 'cpa', 'Cre12.g524700' => 'cre', 'CsaV3_1G034430' => 'csa', 'CsaV3_1G034440' => 'csa', 'CsaV3_1G034450' => 'csa', 'CsaV3_3G034830' => 'csa', 'CsaV3_4G025090' => 'csa', 'CsaV3_5G018660' => 'csa', 'CsaV3_6G038160' => 'csa', 'CSS0003447' => 'camsi', 'CSS0017840' => 'camsi', 'CSS0019260' => 'camsi', 'CSS0040375' => 'camsi', 'CSS0042533' => 'camsi', 'DCAR_005960' => 'dca', 'DCAR_012104' => 'dca', 'DCAR_012105' => 'dca', 'DCAR_012293' => 'dca', 'DCAR_015632' => 'dca', 'DCAR_024602' => 'dca', 'DCAR_028752' => 'dca', 'Dinv06261' => 'din', 'Dinv13982' => 'din', 'Dinv17029' => 'din', 'Dinv18463' => 'din', 'Dinv33181' => 'din', 'Dinv35585' => 'din', 'Dinv37161' => 'din', 'Dinv42977' => 'din', 'Dinv43122' => 'din', 'Dinv44517' => 'din', 'Duzib093G0256' => 'dzi', 'Duzib106G1254' => 'dzi', 'Duzib128G1789' => 'dzi', 'Duzib133G0633' => 'dzi', 'Duzib138G0510' => 'dzi', 'Duzib150G1084' => 'dzi', 'Duzib168G0488' => 'dzi', 'Duzib168G1523' => 'dzi', 'Duzib170G0133' => 'dzi', 'ECA234G1433' => 'eca', 'ECA236G1432' => 'eca', 'ECA236G2256' => 'eca', 'ECA236G2365' => 'eca', 'ECA236G4830' => 'eca', 'ECA248G1505' => 'eca', 'EL10Ac3g06431' => 'bvu', 'EL10Ac5g12577' => 'bvu', 'EL10Ac6g13533' => 'bvu', 'EL10Ac7g16045' => 'bvu', 'Eucgr.A01281' => 'egr', 'Eucgr.B02326' => 'egr', 'Eucgr.H03532' => 'egr', 'Eucgr.K00553' => 'egr', 'Eucgr.K03116' => 'egr', 'FAN02G3963' => 'fan', 'FAN05G0438' => 'fan', 'FAN09G2434' => 'fan', 'FAN12G3984' => 'fan', 'FAN14G0798' => 'fan', 'FAN17G0652' => 'fan', 'FAN19G1988' => 'fan', 'FAN22G0632' => 'fan', 'FAN23G0387' => 'fan', 'FAN26G1323' => 'fan', 'FAN28G0666' => 'fan', 'FvH4_1g26080' => 'fve', 'FvH4_3g36780' => 'fve', 'FvH4_4g15270' => 'fve', 'FvH4_6g13490' => 'fve', 'Glyma.01G098700' => 'gma', 'Glyma.03G065900' => 'gma', 'Glyma.03G073754' => 'gma', 'Glyma.03G073758' => 'gma', 'Glyma.03G083200' => 'gma', 'Glyma.03G225500' => 'gma', 'Glyma.05G037766' => 'gma', 'Glyma.07G133500' => 'gma', 'Glyma.10G139400' => 'gma', 'Glyma.10G248900' => 'gma', 'Glyma.11G137800' => 'gma', 'Glyma.12G061300' => 'gma', 'Glyma.13G337900' => 'gma', 'Glyma.15G036600' => 'gma', 'Glyma.18G182800' => 'gma', 'Glyma.19G222500' => 'gma', 'Glyma.20G144800' => 'gma', 'Gohir.A01G222000' => 'ghi', 'Gohir.A03G044000' => 'ghi', 'Gohir.A03G044100' => 'ghi', 'Gohir.A04G083100' => 'ghi', 'Gohir.A07G127200' => 'ghi', 'Gohir.A07G132400' => 'ghi', 'Gohir.A08G000700' => 'ghi', 'Gohir.A11G327300' => 'ghi', 'Gohir.D01G211500' => 'ghi', 'Gohir.D03G123400' => 'ghi', 'Gohir.D03G123500' => 'ghi', 'Gohir.D04G121800' => 'ghi', 'Gohir.D07G131500' => 'ghi', 'Gohir.D07G136600' => 'ghi', 'Gohir.D08G011600' => 'ghi', 'Gohir.D11G346200' => 'ghi', 'Gorai.001G142800' => 'gra', 'Gorai.001G148700' => 'gra', 'Gorai.002G257300' => 'gra', 'Gorai.003G130000' => 'gra', 'Gorai.003G130100' => 'gra', 'Gorai.004G005300' => 'gra', 'Gorai.007G376500' => 'gra', 'Gorai.012G104700' => 'gra', 'GSVIVG01017946001' => 'vvi', 'GSVIVG01024928001' => 'vvi', 'GSVIVG01028227001' => 'vvi', 'GSVIVG01034151001' => 'vvi', 'HanXRQChr05g0135031' => 'han', 'HanXRQChr05g0135041' => 'han', 'HanXRQChr05g0140021' => 'han', 'HanXRQChr06g0178981' => 'han', 'HanXRQChr07g0188251' => 'han', 'HanXRQChr08g0235311' => 'han', 'HanXRQChr09g0271011' => 'han', 'HanXRQChr10g0293321' => 'han', 'HanXRQChr13g0388171' => 'han', 'Haze_00916' => 'cav', 'Haze_05063' => 'cav', 'Haze_20814' => 'cav', 'Haze_24128' => 'cav', 'Hma1.2p1_0745F.1_g212010' => 'hma', 'Hma1.2p1_0757F.1_g213260' => 'hma', 'Hma1.2p1_0936F.1_g238840' => 'hma', 'Hma1.2p1_1735F.1_g299890' => 'hma', 'Hma1.2p1_1861F.1_g305685' => 'hma', 'HPP92_003397' => 'vpl', 'HPP92_012597' => 'vpl', 'HPP92_015520' => 'vpl', 'HPP92_015539' => 'vpl', 'HPP92_020373' => 'vpl', 'Hund04938' => 'sun', 'Hund10677' => 'sun', 'Hund11033' => 'sun', 'Hund12155' => 'sun', 'Lalb_Chr01g0022551' => 'lal', 'Lalb_Chr03g0042341' => 'lal', 'Lalb_Chr07g0192931' => 'lal', 'Lalb_Chr12g0209551' => 'lal', 'Lalb_Chr19g0125251' => 'lal', 'Lalb_Chr19g0137891' => 'lal', 'Lalb_Chr21g0304641' => 'lal', 'Lalb_Chr21g0309881' => 'lal', 'Lj1A5T12' => 'lonja', 'Lj1C148G10' => 'lonja', 'Lj2A93T83' => 'lonja', 'Lj3A738G68' => 'lonja', 'Lj3C966T1' => 'lonja', 'Lj3g0018958' => 'lja', 'Lj3g0021831' => 'lja', 'Lj3g0025443' => 'lja', 'Lj4g0026809' => 'lja', 'Lj5g0012558' => 'lja', 'Lj5g0021586' => 'lja', 'Lsat_1_v5_gn_5_156840' => 'lsa', 'Lsat_1_v5_gn_8_73460' => 'lsa', 'Lsat_1_v5_gn_8_73481' => 'lsa', 'Lsat_1_v5_gn_9_31601' => 'lsa', 'Lsat_1_v5_gn_9_77320' => 'lsa', 'Manes.01G171300' => 'mes', 'Manes.01G171400' => 'mes', 'Manes.01G236100' => 'mes', 'Manes.02G130500' => 'mes', 'Manes.02G130600' => 'mes', 'Manes.03G180200' => 'mes', 'Manes.05G007000' => 'mes', 'Manes.08G084400' => 'mes', 'Manes.09G092600' => 'mes', 'Manes.15G027900' => 'mes', 'MBI04_g40948_MAGBIO' => 'mbi', 'MBI14_g12123_MAGBIO' => 'mbi', 'MBI18_g28915_MAGBIO' => 'mbi', 'MCO09G053' => 'mco', 'MCO11G782' => 'mco', 'MCO15G215' => 'mco', 'MD03G1088500' => 'mdo', 'MD03G1088600' => 'mdo', 'MD04G1130800' => 'mdo', 'MD09G1291700' => 'mdo', 'MD11G1097500' => 'mdo', 'MD11G1097600' => 'mdo', 'MD12G1143900' => 'mdo', 'MD13G1191400' => 'mdo', 'MD16G1191500' => 'mdo', 'Medtr1g085570' => 'mtr', 'Medtr1g104610' => 'mtr', 'Medtr2g097520' => 'mtr', 'Medtr4g021800' => 'mtr', 'Medtr4g021825' => 'mtr', 'Medtr4g064270' => 'mtr', 'Medtr4g064380' => 'mtr', 'Medtr7g062150' => 'mtr', 'MELO3C003138.2' => 'cme', 'MELO3C005187.2' => 'cme', 'MELO3C009252.2' => 'cme', 'MELO3C014481.2' => 'cme', 'MELO3C020616.2' => 'cme', 'MELO3C020617.2' => 'cme', 'MELO3C020618.2' => 'cme', 'Migut.G00328' => 'egut', 'Migut.J00320' => 'egut', 'Migut.L01000' => 'egut', 'Migut.L01953' => 'egut', 'MSTRG.10253' => 'ama', 'MSTRG.19077' => 'ama', 'MSTRG.26780' => 'ama', 'MSTRG.4023' => 'ama', 'MSTRG.5655' => 'ama', 'MSTRG.9992' => 'ama', 'Nitab4.5_0000043g0310' => 'nta', 'Nitab4.5_0000463g0080' => 'nta', 'Nitab4.5_0000705g0170' => 'nta', 'Nitab4.5_0001326g0060' => 'nta', 'Nitab4.5_0001628g0030' => 'nta', 'Nitab4.5_0002103g0110' => 'nta', 'Nitab4.5_0002946g0030' => 'nta', 'Nitab4.5_0004639g0030' => 'nta', 'Nn2g11149' => 'nnu', 'Nn2g13389' => 'nnu', 'Nn4g25326' => 'nnu', 'Nn4g26290' => 'nnu', 'Nn5g29865' => 'nnu', 'Oeu004163.1' => 'oeu', 'Oeu006901.1' => 'oeu', 'Oeu010096.1' => 'oeu', 'Oeu024340.1' => 'oeu', 'Oeu048369.1' => 'oeu', 'Os01g0973000' => 'osa', 'Os03g0273800' => 'osa', 'Os03g0701200' => 'osa', 'Os03g0834050' => 'osa', 'Os07g0634400' => 'osa', 'Peaxi162Scf00092g01414' => 'pax', 'Peaxi162Scf00165g00818' => 'pax', 'Peaxi162Scf00309g00516' => 'pax', 'Peaxi162Scf00774g00218' => 'pax', 'PGR004G1824' => 'pgr', 'PGR004G2606' => 'pgr', 'PGR031G2716' => 'pgr', 'PGR102G2460' => 'pgr', 'PGR142G2599' => 'pgr', 'PGSC0003DMG400000843' => 'stu', 'PGSC0003DMG400008829' => 'stu', 'PGSC0003DMG400030418' => 'stu', 'PGSC0003DMG400031834' => 'stu', 'PGSC0003DMG401028300' => 'stu', 'PGSC0003DMG402028300' => 'stu', 'Phvul.001G219300' => 'pvu', 'Phvul.007G056000' => 'pvu', 'Phvul.007G208000' => 'pvu', 'Phvul.008G119500' => 'pvu', 'Phvul.010G011200' => 'pvu', 'Phvul.010G014800' => 'pvu', 'Phvul.011G062900' => 'pvu', 'Phvul.L007043' => 'pvu', 'Potri.001G242300' => 'ptr', 'Potri.002G185300' => 'ptr', 'Potri.006G086900' => 'ptr', 'Potri.008G151700' => 'ptr', 'Potri.009G033500' => 'ptr', 'Potri.010G089300' => 'ptr', 'Potri.014G110800' => 'ptr', 'Pp3c27_8130' => 'ppa', 'Pp3c6_27410' => 'ppa', 'PRCOL_00001659' => 'pco', 'PRCOL_00001927' => 'pco', 'PRCOL_00003649' => 'pco', 'Prupe.1G011600' => 'ppe', 'Prupe.3G000800' => 'ppe', 'Prupe.3G001100' => 'ppe', 'Prupe.6G072700' => 'ppe', 'Prupe.6G072800' => 'ppe', 'Prupe.6G257300' => 'ppe', 'Prupe.8G033000' => 'ppe', 'Psat0s2633g0080' => 'psa', 'Psat0s3396g0080' => 'psa', 'Psat0s3396g0200' => 'psa', 'Psat3g139080' => 'psa', 'Psat5g285080' => 'psa', 'Psat6g157760' => 'psa', 'Psat6g208440' => 'psa', 'Psat7g215320' => 'psa', 'Psat7g215400' => 'psa', 'Psat7g235600' => 'psa', 'Psat7g235760' => 'psa', 'PSO063G4603' => 'pso', 'PSO210G0182' => 'pso', 'PSO210G0196' => 'pso', 'PSO339G0394' => 'pso', 'PSO339G4127' => 'pso', 'PSO513G0064' => 'pso', 'PSO761G0079' => 'pso', 'QL01p031003' => 'qlo', 'QL01p031078' => 'qlo', 'QL06p003004' => 'qlo', 'QL07p048731' => 'qlo', 'QL09p037427' => 'qlo', 'RcHm_v2.0_Chr3g0466361' => 'rch', 'RcHm_v2.0_Chr3g0485571' => 'rch', 'RcHm_v2.0_Chr4g0416551' => 'rch', 'RcHm_v2.0_Chr5g0065831' => 'rch', 'Rhsim01G0230500' => 'rsi', 'Rhsim05G0194000' => 'rsi', 'Rhsim08G0250400' => 'rsi', 'Sabra02G0131000' => 'sbr', 'Sabra06G0066300' => 'sbr', 'Sabra08G0115500' => 'sbr', 'Sabra09G0023900' => 'sbr', 'Sabra10G0054000' => 'sbr', 'Sabra14G0081500' => 'sbr', 'Sabra16G0147100' => 'sbr', 'SalBow2G2957' => 'sbo', 'SalBow4G3320' => 'sbo', 'SalBow8G1894' => 'sbo', 'Sc07g0007950' => 'sci', 'Sc12g0001360' => 'sci', 'Sc13g0004330' => 'sci', 'Sc20g0005010' => 'sci', 'Sed0000361' => 'sed', 'Sed0001706' => 'sed', 'Sed0002422' => 'sed', 'Sed0004029' => 'sed', 'Sed0004602' => 'sed', 'Sed0004943' => 'sed', 'Sed0008646' => 'sed', 'Sed0023313' => 'sed', 'Sed0024843' => 'sed', 'SEGI_00081' => 'sgi', 'SEGI_00947' => 'sgi', 'SEGI_04046' => 'sgi', 'SEGI_06880' => 'sgi', 'SEGI_09736' => 'sgi', 'SEGI_12741' => 'sgi', 'SEGI_14530' => 'sgi', 'SEGI_20705' => 'sgi', 'SEGI_26088' => 'sgi', 'SEGI_28323' => 'sgi', 'SEGI_33343' => 'sgi', 'SGA_v2.0_scaffold126G33775' => 'sas', 'SGA_v2.0_scaffold2G01337' => 'sas', 'SGA_v2.0_scaffold38G15006' => 'sas', 'SGA_v2.0_scaffold39G15264' => 'sas', 'SGA_v2.0_scaffold453G51880' => 'sas', 'SHI12696' => 'shi', 'SMO367G1096' => 'smo', 'Solyc01g068630.3' => 'sly', 'Solyc05g011880.3' => 'sly', 'Solyc06g076300.3' => 'sly', 'Solyc09g010940.4' => 'sly', 'Solyc09g075890.3' => 'sly', 'Sopen01g030560' => 'spe', 'Sopen05g006630' => 'spe', 'Sopen06g032720' => 'spe', 'Sopen09g005660' => 'spe', 'Sopen09g030690' => 'spe', 'Sp4g14540' => 'spa', 'Sp4g20030' => 'spa', 'Sp5g01320' => 'spa', 'Sp6g21170' => 'spa', 'Sp6g21180' => 'spa', 'Sp6g21190' => 'spa', 'Sp6g40220' => 'spa', 'TAR362G0122' => 'tar', 'TAR362G1338' => 'tar', 'TAR369G0590' => 'tar', 'TAR371G0824' => 'tar', 'TAR622G1429' => 'tar', 'TAR623G0734' => 'tar', 'TAR625G0441' => 'tar', 'TAR629G0976' => 'tar', 'TAR633G1195' => 'tar', 'TAR636G2660' => 'tar', 'THA.LOC104799440' => 'tha', 'THA.LOC104800966' => 'tha', 'THA.LOC104806559' => 'tha', 'THA.LOC104810765' => 'tha', 'THA.LOC104816266' => 'tha', 'THA.LOC104817419' => 'tha', 'THA.LOC104827021' => 'tha', 'Thecc.01G327400' => 'tca', 'Thecc.04G229200' => 'tca', 'Thecc.05G037400' => 'tca', 'Thecc.09G318600' => 'tca', 'Thecc.09G318700' => 'tca', 'Thhalv10006238m.g' => 'esa', 'Thhalv10014321m.g' => 'esa', 'Thhalv10014335m.g' => 'esa', 'Thhalv10015826m.g' => 'esa', 'Thhalv10017107m.g' => 'esa', 'Thhalv10017180m.g' => 'esa', 'Thhalv10029339m.g' => 'esa', 'TPR.G1699' => 'tpr', 'TPR.G23609' => 'tpr', 'TPR.G3081' => 'tpr', 'TPR.G40397' => 'tpr', 'TPR.G5522' => 'tpr', 'TPR.G5618' => 'tpr', 'TPR.G5626' => 'tpr', 'TWI09G1632' => 'twi', 'TWI23G1230' => 'twi', 'TWI53G1064' => 'twi', 'TWI59G0751' => 'twi', 'TWI74G0947' => 'twi', 'TWI77G0337' => 'twi', 'TWI79G1254' => 'twi', 'unitig_0.g2341' => 'ugi', 'unitig_26.g10006' => 'ugi', 'unitig_26.g10008' => 'ugi', 'unitig_26.g9192' => 'ugi', 'vmacro14547' => 'vma', 'vmacro15333' => 'vma', 'vmacro18743' => 'vma', 'vmacro20166' => 'vma', 'VMungo0331G0523' => 'vmu', 'VMungo0331G1202' => 'vmu', 'VMungo0720G1228' => 'vmu', 'VMungo0720G1514' => 'vmu', 'VMungo1080G0169' => 'vmu', 'VMungo1127G1475' => 'vmu', 'VMungo1383G1208' => 'vmu', 'VMungo1383G1698' => 'vmu', 'Zm00001eb012270' => 'zma', 'Zm00001eb054100' => 'zma', 'Zm00001eb063350' => 'zma', 'Zm00001eb328560' => 'zma', 'Zm00001eb342820' => 'zma', 'Zm00001eb362210' => 'zma', 'Zm00001eb397730' => 'zma', 'Zm00001eb399750' => 'zma' ), 'gf_id' => 'HOM05D000959', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000959' ), 'data_identifier' => 'HOM05D000959', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000959', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '622', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p07100' => 'bna', 'A03p11720' => 'bna', 'A05p08300' => 'bna', 'A05p13380' => 'bna', 'A09p54130' => 'bna', 'A10p16690' => 'bna', 'A10p16700' => 'bna', 'A10p33390' => 'bna', 'Aa31LG10G16020' => 'aar', 'Aa31LG1G11810' => 'aar', 'Aa31LG1G11830' => 'aar', 'Aa31LG1G22510' => 'aar', 'Aa31LG5G4890' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5793' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2310' => 'aag', 'Actinidia08499' => 'ach', 'Actinidia11262' => 'ach', 'Actinidia23926' => 'ach', 'Actinidia34420' => 'ach', 'Actinidia36970' => 'ach', 'Ah.02g111220' => 'amhyb', 'Ah.15g097750' => 'amhyb', 'AL4G27500' => 'aly', 'AL6G11470' => 'aly', 'AL8G35950' => 'aly', 'AL8G35960' => 'aly', 'AL8G35970' => 'aly', 'Aqoxy1G00912' => 'aox', 'Aqoxy2G02253' => 'aox', 'Aqoxy2G02411' => 'aox', 'Aqoxy5G00485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BZ66YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K8ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM4FUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6BF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HFV7XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25JBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0YNNV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MAKK6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P70IT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP2Z6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V61LZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YWP64R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3S9AI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7PGHH' => 'arhy', 'AT2G32150' => 'ath', 'AT3G62040' => 'ath', 'AT5G02230' => 'ath', 'AT5G59480' => 'ath', 'AT5G59490' => 'ath', 'ATR0332G060' => 'atr', 'ATR0559G190' => 'atr', 'ATR0693G294' => 'atr', 'Atru.chr3.3975' => 'acertr', 'Atru.chr3.3976' => 'acertr', 'Atru.chr3.3977' => 'acertr', 'Atru.chr4.2498' => 'acertr', 'Atru.chr5.838' => 'acertr', 'Atru.chr8.1990' => 'acertr', 'Atru.chr8.1991' => 'acertr', 'Atru.chr8.1992' => 'acertr', 'AUR62001759' => 'cqu', 'AUR62009545' => 'cqu', 'AUR62010474' => 'cqu', 'AUR62025820' => 'cqu', 'AUR62030422' => 'cqu', 'AUR62033605' => 'cqu', 'AUR62038615' => 'cqu', 'AUR62041347' => 'cqu', 'BcaB01g04574' => 'bca', 'BcaB02g09263' => 'bca', 'BcaB02g10453' => 'bca', 'BcaB05g22513' => 'bca', 'BcaB08g36253' => 'bca', 'BcaB08g36254' => 'bca', 'BcaC01g06519' => 'bca', 'BcaC02g11889' => 'bca', 'BcaC03g14010' => 'bca', 'BcaC03g18439' => 'bca', 'BcaC04g19765' => 'bca', 'BcaC09g48432' => 'bca', 'BcaNung07302' => 'bca', 'BolC2t06040H' => 'bol', 'BolC2t07346H' => 'bol', 'BolC3t13817H' => 'bol', 'BolC4t22625H' => 'bol', 'BolC4t23297H' => 'bol', 'BolC8t51278H' => 'bol', 'BolC9t58050H' => 'bol', 'BolC9t58051H' => 'bol', 'BolC9t60163H' => 'bol', 'BraA02t04712Z' => 'bra', 'BraA02t05791Z' => 'bra', 'BraA03t10483Z' => 'bra', 'BraA05t19795Z' => 'bra', 'BraA05t20276Z' => 'bra', 'BraA09t40827Z' => 'bra', 'BraA10t43750Z' => 'bra', 'BraA10t43751Z' => 'bra', 'BraA10t45370Z' => 'bra', 'C02p00400' => 'bna', 'C02p12460' => 'bna', 'C03p13680' => 'bna', 'C04p10270' => 'bna', 'C04p17500' => 'bna', 'C08p37010' => 'bna', 'C09p51880' => 'bna', 'C09p51890' => 'bna', 'C09p74300' => 'bna', 'CAN.G179.26' => 'can', 'CAN.G3384.1' => 'can', 'CAN.G394.68' => 'can', 'CAN.G907.13' => 'can', 'CANSAT11G0012' => 'cansat', 'CANSAT25G1586' => 'cansat', 'CANSAT35G0735' => 'cansat', 'CANSAT54G0556' => 'cansat', 'CANSAT64G0356' => 'cansat', 'CANSAT78G2042' => 'cansat', 'CARHR125920' => 'chi', 'CARHR131910' => 'chi', 'CARHR172390' => 'chi', 'CARHR211140' => 'chi', 'CARHR285850' => 'chi', 'CARHR285860' => 'chi', 'Carub.0004s1347' => 'cru', 'Carub.0004s1960' => 'cru', 'Carub.0005s2880' => 'cru', 'Carub.0006s0107' => 'cru', 'Carub.0008s2015' => 'cru', 'Carub.0008s2016' => 'cru', 'Carub.0008s2017' => 'cru', 'Ca_01315_v3' => 'car', 'Ca_05063_v3' => 'car', 'Ca_10231_v3' => 'car', 'Ca_10913_v3' => 'car', 'Ca_19156_v3' => 'car', 'Ca_23644_v3' => 'car', 'Ca_26735_v3' => 'car', 'Cc01_g13130' => 'ccan', 'Cc02_g21690' => 'ccan', 'Cc03_g03600' => 'ccan', 'Cc06_g02510' => 'ccan', 'CDE02G1265' => 'cde', 'CDE05G0415' => 'cde', 'CDE08G1082' => 'cde', 'Cfa005780' => 'cfa', 'Cfa011522' => 'cfa', 'Cfa011523' => 'cfa', 'Cfa015627' => 'cfa', 'Cfa017359' => 'cfa', 'Ciclev10005687m.g' => 'ccl', 'Ciclev10012173m.g' => 'ccl', 'Ciclev10021621m.g' => 'ccl', 'Ciclev10028968m.g' => 'ccl', 'Ciclev10029907m.g' => 'ccl', 'CiPaw.01G164800' => 'cil', 'CiPaw.07G083700' => 'cil', 'CiPaw.07G127000' => 'cil', 'CiPaw.07G136900' => 'cil', 'CiPaw.08G081700' => 'cil', 'CiPaw.09G194600' => 'cil', 'CiPaw.10G146500' => 'cil', 'CiPaw.13G091500' => 'cil', 'CiPaw.13G091600' => 'cil', 'ClCG00G003390' => 'cla', 'ClCG01G007220' => 'cla', 'ClCG03G001370' => 'cla', 'ClCG04G008100' => 'cla', 'ClCG06G006110' => 'cla', 'ClCG06G006130' => 'cla', 'ClCG10G021210' => 'cla', 'COL.COLO4_07648' => 'col', 'COL.COLO4_07650' => 'col', 'COL.COLO4_07651' => 'col', 'COL.COLO4_14780' => 'col', 'COL.COLO4_18546' => 'col', 'COL.COLO4_18547' => 'col', 'COL.COLO4_23103' => 'col', 'COL.COLO4_30419' => 'col', 'COL.COLO4_34232' => 'col', 'Cpa.g.sc169.20' => 'cpa', 'Cpa.g.sc57.45' => 'cpa', 'Cpa.g.sc58.124' => 'cpa', 'Cpa.g.sc58.125' => 'cpa', 'Cpa.g.sc81.118' => 'cpa', 'Cpa.g.sc81.119' => 'cpa', 'Cre12.g524700' => 'cre', 'CsaV3_1G034430' => 'csa', 'CsaV3_1G034440' => 'csa', 'CsaV3_1G034450' => 'csa', 'CsaV3_3G034830' => 'csa', 'CsaV3_4G025090' => 'csa', 'CsaV3_5G018660' => 'csa', 'CsaV3_6G038160' => 'csa', 'CSS0003447' => 'camsi', 'CSS0017840' => 'camsi', 'CSS0019260' => 'camsi', 'CSS0040375' => 'camsi', 'CSS0042533' => 'camsi', 'DCAR_005960' => 'dca', 'DCAR_012104' => 'dca', 'DCAR_012105' => 'dca', 'DCAR_012293' => 'dca', 'DCAR_015632' => 'dca', 'DCAR_024602' => 'dca', 'DCAR_028752' => 'dca', 'Dinv06261' => 'din', 'Dinv13982' => 'din', 'Dinv17029' => 'din', 'Dinv18463' => 'din', 'Dinv33181' => 'din', 'Dinv35585' => 'din', 'Dinv37161' => 'din', 'Dinv42977' => 'din', 'Dinv43122' => 'din', 'Dinv44517' => 'din', 'Duzib093G0256' => 'dzi', 'Duzib106G1254' => 'dzi', 'Duzib128G1789' => 'dzi', 'Duzib133G0633' => 'dzi', 'Duzib138G0510' => 'dzi', 'Duzib150G1084' => 'dzi', 'Duzib168G0488' => 'dzi', 'Duzib168G1523' => 'dzi', 'Duzib170G0133' => 'dzi', 'ECA234G1433' => 'eca', 'ECA236G1432' => 'eca', 'ECA236G2256' => 'eca', 'ECA236G2365' => 'eca', 'ECA236G4830' => 'eca', 'ECA248G1505' => 'eca', 'EL10Ac3g06431' => 'bvu', 'EL10Ac5g12577' => 'bvu', 'EL10Ac6g13533' => 'bvu', 'EL10Ac7g16045' => 'bvu', 'Eucgr.A01281' => 'egr', 'Eucgr.B02326' => 'egr', 'Eucgr.H03532' => 'egr', 'Eucgr.K00553' => 'egr', 'Eucgr.K03116' => 'egr', 'FAN02G3963' => 'fan', 'FAN05G0438' => 'fan', 'FAN09G2434' => 'fan', 'FAN12G3984' => 'fan', 'FAN14G0798' => 'fan', 'FAN17G0652' => 'fan', 'FAN19G1988' => 'fan', 'FAN22G0632' => 'fan', 'FAN23G0387' => 'fan', 'FAN26G1323' => 'fan', 'FAN28G0666' => 'fan', 'FvH4_1g26080' => 'fve', 'FvH4_3g36780' => 'fve', 'FvH4_4g15270' => 'fve', 'FvH4_6g13490' => 'fve', 'Glyma.01G098700' => 'gma', 'Glyma.03G065900' => 'gma', 'Glyma.03G073754' => 'gma', 'Glyma.03G073758' => 'gma', 'Glyma.03G083200' => 'gma', 'Glyma.03G225500' => 'gma', 'Glyma.05G037766' => 'gma', 'Glyma.07G133500' => 'gma', 'Glyma.10G139400' => 'gma', 'Glyma.10G248900' => 'gma', 'Glyma.11G137800' => 'gma', 'Glyma.12G061300' => 'gma', 'Glyma.13G337900' => 'gma', 'Glyma.15G036600' => 'gma', 'Glyma.18G182800' => 'gma', 'Glyma.19G222500' => 'gma', 'Glyma.20G144800' => 'gma', 'Gohir.A01G222000' => 'ghi', 'Gohir.A03G044000' => 'ghi', 'Gohir.A03G044100' => 'ghi', 'Gohir.A04G083100' => 'ghi', 'Gohir.A07G127200' => 'ghi', 'Gohir.A07G132400' => 'ghi', 'Gohir.A08G000700' => 'ghi', 'Gohir.A11G327300' => 'ghi', 'Gohir.D01G211500' => 'ghi', 'Gohir.D03G123400' => 'ghi', 'Gohir.D03G123500' => 'ghi', 'Gohir.D04G121800' => 'ghi', 'Gohir.D07G131500' => 'ghi', 'Gohir.D07G136600' => 'ghi', 'Gohir.D08G011600' => 'ghi', 'Gohir.D11G346200' => 'ghi', 'Gorai.001G142800' => 'gra', 'Gorai.001G148700' => 'gra', 'Gorai.002G257300' => 'gra', 'Gorai.003G130000' => 'gra', 'Gorai.003G130100' => 'gra', 'Gorai.004G005300' => 'gra', 'Gorai.007G376500' => 'gra', 'Gorai.012G104700' => 'gra', 'GSVIVG01017946001' => 'vvi', 'GSVIVG01024928001' => 'vvi', 'GSVIVG01028227001' => 'vvi', 'GSVIVG01034151001' => 'vvi', 'HanXRQChr05g0135031' => 'han', 'HanXRQChr05g0135041' => 'han', 'HanXRQChr05g0140021' => 'han', 'HanXRQChr06g0178981' => 'han', 'HanXRQChr07g0188251' => 'han', 'HanXRQChr08g0235311' => 'han', 'HanXRQChr09g0271011' => 'han', 'HanXRQChr10g0293321' => 'han', 'HanXRQChr13g0388171' => 'han', 'Haze_00916' => 'cav', 'Haze_05063' => 'cav', 'Haze_20814' => 'cav', 'Haze_24128' => 'cav', 'Hma1.2p1_0745F.1_g212010' => 'hma', 'Hma1.2p1_0757F.1_g213260' => 'hma', 'Hma1.2p1_0936F.1_g238840' => 'hma', 'Hma1.2p1_1735F.1_g299890' => 'hma', 'Hma1.2p1_1861F.1_g305685' => 'hma', 'HPP92_003397' => 'vpl', 'HPP92_012597' => 'vpl', 'HPP92_015520' => 'vpl', 'HPP92_015539' => 'vpl', 'HPP92_020373' => 'vpl', 'Hund04938' => 'sun', 'Hund10677' => 'sun', 'Hund11033' => 'sun', 'Hund12155' => 'sun', 'Lalb_Chr01g0022551' => 'lal', 'Lalb_Chr03g0042341' => 'lal', 'Lalb_Chr07g0192931' => 'lal', 'Lalb_Chr12g0209551' => 'lal', 'Lalb_Chr19g0125251' => 'lal', 'Lalb_Chr19g0137891' => 'lal', 'Lalb_Chr21g0304641' => 'lal', 'Lalb_Chr21g0309881' => 'lal', 'Lj1A5T12' => 'lonja', 'Lj1C148G10' => 'lonja', 'Lj2A93T83' => 'lonja', 'Lj3A738G68' => 'lonja', 'Lj3C966T1' => 'lonja', 'Lj3g0018958' => 'lja', 'Lj3g0021831' => 'lja', 'Lj3g0025443' => 'lja', 'Lj4g0026809' => 'lja', 'Lj5g0012558' => 'lja', 'Lj5g0021586' => 'lja', 'Lsat_1_v5_gn_5_156840' => 'lsa', 'Lsat_1_v5_gn_8_73460' => 'lsa', 'Lsat_1_v5_gn_8_73481' => 'lsa', 'Lsat_1_v5_gn_9_31601' => 'lsa', 'Lsat_1_v5_gn_9_77320' => 'lsa', 'Manes.01G171300' => 'mes', 'Manes.01G171400' => 'mes', 'Manes.01G236100' => 'mes', 'Manes.02G130500' => 'mes', 'Manes.02G130600' => 'mes', 'Manes.03G180200' => 'mes', 'Manes.05G007000' => 'mes', 'Manes.08G084400' => 'mes', 'Manes.09G092600' => 'mes', 'Manes.15G027900' => 'mes', 'MBI04_g40948_MAGBIO' => 'mbi', 'MBI14_g12123_MAGBIO' => 'mbi', 'MBI18_g28915_MAGBIO' => 'mbi', 'MCO09G053' => 'mco', 'MCO11G782' => 'mco', 'MCO15G215' => 'mco', 'MD03G1088500' => 'mdo', 'MD03G1088600' => 'mdo', 'MD04G1130800' => 'mdo', 'MD09G1291700' => 'mdo', 'MD11G1097500' => 'mdo', 'MD11G1097600' => 'mdo', 'MD12G1143900' => 'mdo', 'MD13G1191400' => 'mdo', 'MD16G1191500' => 'mdo', 'Medtr1g085570' => 'mtr', 'Medtr1g104610' => 'mtr', 'Medtr2g097520' => 'mtr', 'Medtr4g021800' => 'mtr', 'Medtr4g021825' => 'mtr', 'Medtr4g064270' => 'mtr', 'Medtr4g064380' => 'mtr', 'Medtr7g062150' => 'mtr', 'MELO3C003138.2' => 'cme', 'MELO3C005187.2' => 'cme', 'MELO3C009252.2' => 'cme', 'MELO3C014481.2' => 'cme', 'MELO3C020616.2' => 'cme', 'MELO3C020617.2' => 'cme', 'MELO3C020618.2' => 'cme', 'Migut.G00328' => 'egut', 'Migut.J00320' => 'egut', 'Migut.L01000' => 'egut', 'Migut.L01953' => 'egut', 'MSTRG.10253' => 'ama', 'MSTRG.19077' => 'ama', 'MSTRG.26780' => 'ama', 'MSTRG.4023' => 'ama', 'MSTRG.5655' => 'ama', 'MSTRG.9992' => 'ama', 'Nitab4.5_0000043g0310' => 'nta', 'Nitab4.5_0000463g0080' => 'nta', 'Nitab4.5_0000705g0170' => 'nta', 'Nitab4.5_0001326g0060' => 'nta', 'Nitab4.5_0001628g0030' => 'nta', 'Nitab4.5_0002103g0110' => 'nta', 'Nitab4.5_0002946g0030' => 'nta', 'Nitab4.5_0004639g0030' => 'nta', 'Nn2g11149' => 'nnu', 'Nn2g13389' => 'nnu', 'Nn4g25326' => 'nnu', 'Nn4g26290' => 'nnu', 'Nn5g29865' => 'nnu', 'Oeu004163.1' => 'oeu', 'Oeu006901.1' => 'oeu', 'Oeu010096.1' => 'oeu', 'Oeu024340.1' => 'oeu', 'Oeu048369.1' => 'oeu', 'Os01g0973000' => 'osa', 'Os03g0273800' => 'osa', 'Os03g0701200' => 'osa', 'Os03g0834050' => 'osa', 'Os07g0634400' => 'osa', 'Peaxi162Scf00092g01414' => 'pax', 'Peaxi162Scf00165g00818' => 'pax', 'Peaxi162Scf00309g00516' => 'pax', 'Peaxi162Scf00774g00218' => 'pax', 'PGR004G1824' => 'pgr', 'PGR004G2606' => 'pgr', 'PGR031G2716' => 'pgr', 'PGR102G2460' => 'pgr', 'PGR142G2599' => 'pgr', 'PGSC0003DMG400000843' => 'stu', 'PGSC0003DMG400008829' => 'stu', 'PGSC0003DMG400030418' => 'stu', 'PGSC0003DMG400031834' => 'stu', 'PGSC0003DMG401028300' => 'stu', 'PGSC0003DMG402028300' => 'stu', 'Phvul.001G219300' => 'pvu', 'Phvul.007G056000' => 'pvu', 'Phvul.007G208000' => 'pvu', 'Phvul.008G119500' => 'pvu', 'Phvul.010G011200' => 'pvu', 'Phvul.010G014800' => 'pvu', 'Phvul.011G062900' => 'pvu', 'Phvul.L007043' => 'pvu', 'Potri.001G242300' => 'ptr', 'Potri.002G185300' => 'ptr', 'Potri.006G086900' => 'ptr', 'Potri.008G151700' => 'ptr', 'Potri.009G033500' => 'ptr', 'Potri.010G089300' => 'ptr', 'Potri.014G110800' => 'ptr', 'Pp3c27_8130' => 'ppa', 'Pp3c6_27410' => 'ppa', 'PRCOL_00001659' => 'pco', 'PRCOL_00001927' => 'pco', 'PRCOL_00003649' => 'pco', 'Prupe.1G011600' => 'ppe', 'Prupe.3G000800' => 'ppe', 'Prupe.3G001100' => 'ppe', 'Prupe.6G072700' => 'ppe', 'Prupe.6G072800' => 'ppe', 'Prupe.6G257300' => 'ppe', 'Prupe.8G033000' => 'ppe', 'Psat0s2633g0080' => 'psa', 'Psat0s3396g0080' => 'psa', 'Psat0s3396g0200' => 'psa', 'Psat3g139080' => 'psa', 'Psat5g285080' => 'psa', 'Psat6g157760' => 'psa', 'Psat6g208440' => 'psa', 'Psat7g215320' => 'psa', 'Psat7g215400' => 'psa', 'Psat7g235600' => 'psa', 'Psat7g235760' => 'psa', 'PSO063G4603' => 'pso', 'PSO210G0182' => 'pso', 'PSO210G0196' => 'pso', 'PSO339G0394' => 'pso', 'PSO339G4127' => 'pso', 'PSO513G0064' => 'pso', 'PSO761G0079' => 'pso', 'QL01p031003' => 'qlo', 'QL01p031078' => 'qlo', 'QL06p003004' => 'qlo', 'QL07p048731' => 'qlo', 'QL09p037427' => 'qlo', 'RcHm_v2.0_Chr3g0466361' => 'rch', 'RcHm_v2.0_Chr3g0485571' => 'rch', 'RcHm_v2.0_Chr4g0416551' => 'rch', 'RcHm_v2.0_Chr5g0065831' => 'rch', 'Rhsim01G0230500' => 'rsi', 'Rhsim05G0194000' => 'rsi', 'Rhsim08G0250400' => 'rsi', 'Sabra02G0131000' => 'sbr', 'Sabra06G0066300' => 'sbr', 'Sabra08G0115500' => 'sbr', 'Sabra09G0023900' => 'sbr', 'Sabra10G0054000' => 'sbr', 'Sabra14G0081500' => 'sbr', 'Sabra16G0147100' => 'sbr', 'SalBow2G2957' => 'sbo', 'SalBow4G3320' => 'sbo', 'SalBow8G1894' => 'sbo', 'Sc07g0007950' => 'sci', 'Sc12g0001360' => 'sci', 'Sc13g0004330' => 'sci', 'Sc20g0005010' => 'sci', 'Sed0000361' => 'sed', 'Sed0001706' => 'sed', 'Sed0002422' => 'sed', 'Sed0004029' => 'sed', 'Sed0004602' => 'sed', 'Sed0004943' => 'sed', 'Sed0008646' => 'sed', 'Sed0023313' => 'sed', 'Sed0024843' => 'sed', 'SEGI_00081' => 'sgi', 'SEGI_00947' => 'sgi', 'SEGI_04046' => 'sgi', 'SEGI_06880' => 'sgi', 'SEGI_09736' => 'sgi', 'SEGI_12741' => 'sgi', 'SEGI_14530' => 'sgi', 'SEGI_20705' => 'sgi', 'SEGI_26088' => 'sgi', 'SEGI_28323' => 'sgi', 'SEGI_33343' => 'sgi', 'SGA_v2.0_scaffold126G33775' => 'sas', 'SGA_v2.0_scaffold2G01337' => 'sas', 'SGA_v2.0_scaffold38G15006' => 'sas', 'SGA_v2.0_scaffold39G15264' => 'sas', 'SGA_v2.0_scaffold453G51880' => 'sas', 'SHI12696' => 'shi', 'SMO367G1096' => 'smo', 'Solyc01g068630.3' => 'sly', 'Solyc05g011880.3' => 'sly', 'Solyc06g076300.3' => 'sly', 'Solyc09g010940.4' => 'sly', 'Solyc09g075890.3' => 'sly', 'Sopen01g030560' => 'spe', 'Sopen05g006630' => 'spe', 'Sopen06g032720' => 'spe', 'Sopen09g005660' => 'spe', 'Sopen09g030690' => 'spe', 'Sp4g14540' => 'spa', 'Sp4g20030' => 'spa', 'Sp5g01320' => 'spa', 'Sp6g21170' => 'spa', 'Sp6g21180' => 'spa', 'Sp6g21190' => 'spa', 'Sp6g40220' => 'spa', 'TAR362G0122' => 'tar', 'TAR362G1338' => 'tar', 'TAR369G0590' => 'tar', 'TAR371G0824' => 'tar', 'TAR622G1429' => 'tar', 'TAR623G0734' => 'tar', 'TAR625G0441' => 'tar', 'TAR629G0976' => 'tar', 'TAR633G1195' => 'tar', 'TAR636G2660' => 'tar', 'THA.LOC104799440' => 'tha', 'THA.LOC104800966' => 'tha', 'THA.LOC104806559' => 'tha', 'THA.LOC104810765' => 'tha', 'THA.LOC104816266' => 'tha', 'THA.LOC104817419' => 'tha', 'THA.LOC104827021' => 'tha', 'Thecc.01G327400' => 'tca', 'Thecc.04G229200' => 'tca', 'Thecc.05G037400' => 'tca', 'Thecc.09G318600' => 'tca', 'Thecc.09G318700' => 'tca', 'Thhalv10006238m.g' => 'esa', 'Thhalv10014321m.g' => 'esa', 'Thhalv10014335m.g' => 'esa', 'Thhalv10015826m.g' => 'esa', 'Thhalv10017107m.g' => 'esa', 'Thhalv10017180m.g' => 'esa', 'Thhalv10029339m.g' => 'esa', 'TPR.G1699' => 'tpr', 'TPR.G23609' => 'tpr', 'TPR.G3081' => 'tpr', 'TPR.G40397' => 'tpr', 'TPR.G5522' => 'tpr', 'TPR.G5618' => 'tpr', 'TPR.G5626' => 'tpr', 'TWI09G1632' => 'twi', 'TWI23G1230' => 'twi', 'TWI53G1064' => 'twi', 'TWI59G0751' => 'twi', 'TWI74G0947' => 'twi', 'TWI77G0337' => 'twi', 'TWI79G1254' => 'twi', 'unitig_0.g2341' => 'ugi', 'unitig_26.g10006' => 'ugi', 'unitig_26.g10008' => 'ugi', 'unitig_26.g9192' => 'ugi', 'vmacro14547' => 'vma', 'vmacro15333' => 'vma', 'vmacro18743' => 'vma', 'vmacro20166' => 'vma', 'VMungo0331G0523' => 'vmu', 'VMungo0331G1202' => 'vmu', 'VMungo0720G1228' => 'vmu', 'VMungo0720G1514' => 'vmu', 'VMungo1080G0169' => 'vmu', 'VMungo1127G1475' => 'vmu', 'VMungo1383G1208' => 'vmu', 'VMungo1383G1698' => 'vmu', 'Zm00001eb012270' => 'zma', 'Zm00001eb054100' => 'zma', 'Zm00001eb063350' => 'zma', 'Zm00001eb328560' => 'zma', 'Zm00001eb342820' => 'zma', 'Zm00001eb362210' => 'zma', 'Zm00001eb397730' => 'zma', 'Zm00001eb399750' => 'zma' ) $gf_id = 'HOM05D000959' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000959' ) $data_identifier = 'HOM05D000959' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 5, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 5, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 10, 'mbi' => (int) 3, 'mco' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 2, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 3, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 11, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399750' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000959', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '622', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p07100' => 'bna', 'A03p11720' => 'bna', 'A05p08300' => 'bna', 'A05p13380' => 'bna', 'A09p54130' => 'bna', 'A10p16690' => 'bna', 'A10p16700' => 'bna', 'A10p33390' => 'bna', 'Aa31LG10G16020' => 'aar', 'Aa31LG1G11810' => 'aar', 'Aa31LG1G11830' => 'aar', 'Aa31LG1G22510' => 'aar', 'Aa31LG5G4890' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5793' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2310' => 'aag', 'Actinidia08499' => 'ach', 'Actinidia11262' => 'ach', 'Actinidia23926' => 'ach', 'Actinidia34420' => 'ach', 'Actinidia36970' => 'ach', 'Ah.02g111220' => 'amhyb', 'Ah.15g097750' => 'amhyb', 'AL4G27500' => 'aly', 'AL6G11470' => 'aly', 'AL8G35950' => 'aly', 'AL8G35960' => 'aly', 'AL8G35970' => 'aly', 'Aqoxy1G00912' => 'aox', 'Aqoxy2G02253' => 'aox', 'Aqoxy2G02411' => 'aox', 'Aqoxy5G00485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BZ66YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K8ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM4FUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6BF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HFV7XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25JBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0YNNV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MAKK6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P70IT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP2Z6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V61LZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YWP64R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3S9AI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7PGHH' => 'arhy', 'AT2G32150' => 'ath', 'AT3G62040' => 'ath', 'AT5G02230' => 'ath', 'AT5G59480' => 'ath', 'AT5G59490' => 'ath', 'ATR0332G060' => 'atr', 'ATR0559G190' => 'atr', 'ATR0693G294' => 'atr', 'Atru.chr3.3975' => 'acertr', 'Atru.chr3.3976' => 'acertr', 'Atru.chr3.3977' => 'acertr', 'Atru.chr4.2498' => 'acertr', 'Atru.chr5.838' => 'acertr', 'Atru.chr8.1990' => 'acertr', 'Atru.chr8.1991' => 'acertr', 'Atru.chr8.1992' => 'acertr', 'AUR62001759' => 'cqu', 'AUR62009545' => 'cqu', 'AUR62010474' => 'cqu', 'AUR62025820' => 'cqu', 'AUR62030422' => 'cqu', 'AUR62033605' => 'cqu', 'AUR62038615' => 'cqu', 'AUR62041347' => 'cqu', 'BcaB01g04574' => 'bca', 'BcaB02g09263' => 'bca', 'BcaB02g10453' => 'bca', 'BcaB05g22513' => 'bca', 'BcaB08g36253' => 'bca', 'BcaB08g36254' => 'bca', 'BcaC01g06519' => 'bca', 'BcaC02g11889' => 'bca', 'BcaC03g14010' => 'bca', 'BcaC03g18439' => 'bca', 'BcaC04g19765' => 'bca', 'BcaC09g48432' => 'bca', 'BcaNung07302' => 'bca', 'BolC2t06040H' => 'bol', 'BolC2t07346H' => 'bol', 'BolC3t13817H' => 'bol', 'BolC4t22625H' => 'bol', 'BolC4t23297H' => 'bol', 'BolC8t51278H' => 'bol', 'BolC9t58050H' => 'bol', 'BolC9t58051H' => 'bol', 'BolC9t60163H' => 'bol', 'BraA02t04712Z' => 'bra', 'BraA02t05791Z' => 'bra', 'BraA03t10483Z' => 'bra', 'BraA05t19795Z' => 'bra', 'BraA05t20276Z' => 'bra', 'BraA09t40827Z' => 'bra', 'BraA10t43750Z' => 'bra', 'BraA10t43751Z' => 'bra', 'BraA10t45370Z' => 'bra', 'C02p00400' => 'bna', 'C02p12460' => 'bna', 'C03p13680' => 'bna', 'C04p10270' => 'bna', 'C04p17500' => 'bna', 'C08p37010' => 'bna', 'C09p51880' => 'bna', 'C09p51890' => 'bna', 'C09p74300' => 'bna', 'CAN.G179.26' => 'can', 'CAN.G3384.1' => 'can', 'CAN.G394.68' => 'can', 'CAN.G907.13' => 'can', 'CANSAT11G0012' => 'cansat', 'CANSAT25G1586' => 'cansat', 'CANSAT35G0735' => 'cansat', 'CANSAT54G0556' => 'cansat', 'CANSAT64G0356' => 'cansat', 'CANSAT78G2042' => 'cansat', 'CARHR125920' => 'chi', 'CARHR131910' => 'chi', 'CARHR172390' => 'chi', 'CARHR211140' => 'chi', 'CARHR285850' => 'chi', 'CARHR285860' => 'chi', 'Carub.0004s1347' => 'cru', 'Carub.0004s1960' => 'cru', 'Carub.0005s2880' => 'cru', 'Carub.0006s0107' => 'cru', 'Carub.0008s2015' => 'cru', 'Carub.0008s2016' => 'cru', 'Carub.0008s2017' => 'cru', 'Ca_01315_v3' => 'car', 'Ca_05063_v3' => 'car', 'Ca_10231_v3' => 'car', 'Ca_10913_v3' => 'car', 'Ca_19156_v3' => 'car', 'Ca_23644_v3' => 'car', 'Ca_26735_v3' => 'car', 'Cc01_g13130' => 'ccan', 'Cc02_g21690' => 'ccan', 'Cc03_g03600' => 'ccan', 'Cc06_g02510' => 'ccan', 'CDE02G1265' => 'cde', 'CDE05G0415' => 'cde', 'CDE08G1082' => 'cde', 'Cfa005780' => 'cfa', 'Cfa011522' => 'cfa', 'Cfa011523' => 'cfa', 'Cfa015627' => 'cfa', 'Cfa017359' => 'cfa', 'Ciclev10005687m.g' => 'ccl', 'Ciclev10012173m.g' => 'ccl', 'Ciclev10021621m.g' => 'ccl', 'Ciclev10028968m.g' => 'ccl', 'Ciclev10029907m.g' => 'ccl', 'CiPaw.01G164800' => 'cil', 'CiPaw.07G083700' => 'cil', 'CiPaw.07G127000' => 'cil', 'CiPaw.07G136900' => 'cil', 'CiPaw.08G081700' => 'cil', 'CiPaw.09G194600' => 'cil', 'CiPaw.10G146500' => 'cil', 'CiPaw.13G091500' => 'cil', 'CiPaw.13G091600' => 'cil', 'ClCG00G003390' => 'cla', 'ClCG01G007220' => 'cla', 'ClCG03G001370' => 'cla', 'ClCG04G008100' => 'cla', 'ClCG06G006110' => 'cla', 'ClCG06G006130' => 'cla', 'ClCG10G021210' => 'cla', 'COL.COLO4_07648' => 'col', 'COL.COLO4_07650' => 'col', 'COL.COLO4_07651' => 'col', 'COL.COLO4_14780' => 'col', 'COL.COLO4_18546' => 'col', 'COL.COLO4_18547' => 'col', 'COL.COLO4_23103' => 'col', 'COL.COLO4_30419' => 'col', 'COL.COLO4_34232' => 'col', 'Cpa.g.sc169.20' => 'cpa', 'Cpa.g.sc57.45' => 'cpa', 'Cpa.g.sc58.124' => 'cpa', 'Cpa.g.sc58.125' => 'cpa', 'Cpa.g.sc81.118' => 'cpa', 'Cpa.g.sc81.119' => 'cpa', 'Cre12.g524700' => 'cre', 'CsaV3_1G034430' => 'csa', 'CsaV3_1G034440' => 'csa', 'CsaV3_1G034450' => 'csa', 'CsaV3_3G034830' => 'csa', 'CsaV3_4G025090' => 'csa', 'CsaV3_5G018660' => 'csa', 'CsaV3_6G038160' => 'csa', 'CSS0003447' => 'camsi', 'CSS0017840' => 'camsi', 'CSS0019260' => 'camsi', 'CSS0040375' => 'camsi', 'CSS0042533' => 'camsi', 'DCAR_005960' => 'dca', 'DCAR_012104' => 'dca', 'DCAR_012105' => 'dca', 'DCAR_012293' => 'dca', 'DCAR_015632' => 'dca', 'DCAR_024602' => 'dca', 'DCAR_028752' => 'dca', 'Dinv06261' => 'din', 'Dinv13982' => 'din', 'Dinv17029' => 'din', 'Dinv18463' => 'din', 'Dinv33181' => 'din', 'Dinv35585' => 'din', 'Dinv37161' => 'din', 'Dinv42977' => 'din', 'Dinv43122' => 'din', 'Dinv44517' => 'din', 'Duzib093G0256' => 'dzi', 'Duzib106G1254' => 'dzi', 'Duzib128G1789' => 'dzi', 'Duzib133G0633' => 'dzi', 'Duzib138G0510' => 'dzi', 'Duzib150G1084' => 'dzi', 'Duzib168G0488' => 'dzi', 'Duzib168G1523' => 'dzi', 'Duzib170G0133' => 'dzi', 'ECA234G1433' => 'eca', 'ECA236G1432' => 'eca', 'ECA236G2256' => 'eca', 'ECA236G2365' => 'eca', 'ECA236G4830' => 'eca', 'ECA248G1505' => 'eca', 'EL10Ac3g06431' => 'bvu', 'EL10Ac5g12577' => 'bvu', 'EL10Ac6g13533' => 'bvu', 'EL10Ac7g16045' => 'bvu', 'Eucgr.A01281' => 'egr', 'Eucgr.B02326' => 'egr', 'Eucgr.H03532' => 'egr', 'Eucgr.K00553' => 'egr', 'Eucgr.K03116' => 'egr', 'FAN02G3963' => 'fan', 'FAN05G0438' => 'fan', 'FAN09G2434' => 'fan', 'FAN12G3984' => 'fan', 'FAN14G0798' => 'fan', 'FAN17G0652' => 'fan', 'FAN19G1988' => 'fan', 'FAN22G0632' => 'fan', 'FAN23G0387' => 'fan', 'FAN26G1323' => 'fan', 'FAN28G0666' => 'fan', 'FvH4_1g26080' => 'fve', 'FvH4_3g36780' => 'fve', 'FvH4_4g15270' => 'fve', 'FvH4_6g13490' => 'fve', 'Glyma.01G098700' => 'gma', 'Glyma.03G065900' => 'gma', 'Glyma.03G073754' => 'gma', 'Glyma.03G073758' => 'gma', 'Glyma.03G083200' => 'gma', 'Glyma.03G225500' => 'gma', 'Glyma.05G037766' => 'gma', 'Glyma.07G133500' => 'gma', 'Glyma.10G139400' => 'gma', 'Glyma.10G248900' => 'gma', 'Glyma.11G137800' => 'gma', 'Glyma.12G061300' => 'gma', 'Glyma.13G337900' => 'gma', 'Glyma.15G036600' => 'gma', 'Glyma.18G182800' => 'gma', 'Glyma.19G222500' => 'gma', 'Glyma.20G144800' => 'gma', 'Gohir.A01G222000' => 'ghi', 'Gohir.A03G044000' => 'ghi', 'Gohir.A03G044100' => 'ghi', 'Gohir.A04G083100' => 'ghi', 'Gohir.A07G127200' => 'ghi', 'Gohir.A07G132400' => 'ghi', 'Gohir.A08G000700' => 'ghi', 'Gohir.A11G327300' => 'ghi', 'Gohir.D01G211500' => 'ghi', 'Gohir.D03G123400' => 'ghi', 'Gohir.D03G123500' => 'ghi', 'Gohir.D04G121800' => 'ghi', 'Gohir.D07G131500' => 'ghi', 'Gohir.D07G136600' => 'ghi', 'Gohir.D08G011600' => 'ghi', 'Gohir.D11G346200' => 'ghi', 'Gorai.001G142800' => 'gra', 'Gorai.001G148700' => 'gra', 'Gorai.002G257300' => 'gra', 'Gorai.003G130000' => 'gra', 'Gorai.003G130100' => 'gra', 'Gorai.004G005300' => 'gra', 'Gorai.007G376500' => 'gra', 'Gorai.012G104700' => 'gra', 'GSVIVG01017946001' => 'vvi', 'GSVIVG01024928001' => 'vvi', 'GSVIVG01028227001' => 'vvi', 'GSVIVG01034151001' => 'vvi', 'HanXRQChr05g0135031' => 'han', 'HanXRQChr05g0135041' => 'han', 'HanXRQChr05g0140021' => 'han', 'HanXRQChr06g0178981' => 'han', 'HanXRQChr07g0188251' => 'han', 'HanXRQChr08g0235311' => 'han', 'HanXRQChr09g0271011' => 'han', 'HanXRQChr10g0293321' => 'han', 'HanXRQChr13g0388171' => 'han', 'Haze_00916' => 'cav', 'Haze_05063' => 'cav', 'Haze_20814' => 'cav', 'Haze_24128' => 'cav', 'Hma1.2p1_0745F.1_g212010' => 'hma', 'Hma1.2p1_0757F.1_g213260' => 'hma', 'Hma1.2p1_0936F.1_g238840' => 'hma', 'Hma1.2p1_1735F.1_g299890' => 'hma', 'Hma1.2p1_1861F.1_g305685' => 'hma', 'HPP92_003397' => 'vpl', 'HPP92_012597' => 'vpl', 'HPP92_015520' => 'vpl', 'HPP92_015539' => 'vpl', 'HPP92_020373' => 'vpl', 'Hund04938' => 'sun', 'Hund10677' => 'sun', 'Hund11033' => 'sun', 'Hund12155' => 'sun', 'Lalb_Chr01g0022551' => 'lal', 'Lalb_Chr03g0042341' => 'lal', 'Lalb_Chr07g0192931' => 'lal', 'Lalb_Chr12g0209551' => 'lal', 'Lalb_Chr19g0125251' => 'lal', 'Lalb_Chr19g0137891' => 'lal', 'Lalb_Chr21g0304641' => 'lal', 'Lalb_Chr21g0309881' => 'lal', 'Lj1A5T12' => 'lonja', 'Lj1C148G10' => 'lonja', 'Lj2A93T83' => 'lonja', 'Lj3A738G68' => 'lonja', 'Lj3C966T1' => 'lonja', 'Lj3g0018958' => 'lja', 'Lj3g0021831' => 'lja', 'Lj3g0025443' => 'lja', 'Lj4g0026809' => 'lja', 'Lj5g0012558' => 'lja', 'Lj5g0021586' => 'lja', 'Lsat_1_v5_gn_5_156840' => 'lsa', 'Lsat_1_v5_gn_8_73460' => 'lsa', 'Lsat_1_v5_gn_8_73481' => 'lsa', 'Lsat_1_v5_gn_9_31601' => 'lsa', 'Lsat_1_v5_gn_9_77320' => 'lsa', 'Manes.01G171300' => 'mes', 'Manes.01G171400' => 'mes', 'Manes.01G236100' => 'mes', 'Manes.02G130500' => 'mes', 'Manes.02G130600' => 'mes', 'Manes.03G180200' => 'mes', 'Manes.05G007000' => 'mes', 'Manes.08G084400' => 'mes', 'Manes.09G092600' => 'mes', 'Manes.15G027900' => 'mes', 'MBI04_g40948_MAGBIO' => 'mbi', 'MBI14_g12123_MAGBIO' => 'mbi', 'MBI18_g28915_MAGBIO' => 'mbi', 'MCO09G053' => 'mco', 'MCO11G782' => 'mco', 'MCO15G215' => 'mco', 'MD03G1088500' => 'mdo', 'MD03G1088600' => 'mdo', 'MD04G1130800' => 'mdo', 'MD09G1291700' => 'mdo', 'MD11G1097500' => 'mdo', 'MD11G1097600' => 'mdo', 'MD12G1143900' => 'mdo', 'MD13G1191400' => 'mdo', 'MD16G1191500' => 'mdo', 'Medtr1g085570' => 'mtr', 'Medtr1g104610' => 'mtr', 'Medtr2g097520' => 'mtr', 'Medtr4g021800' => 'mtr', 'Medtr4g021825' => 'mtr', 'Medtr4g064270' => 'mtr', 'Medtr4g064380' => 'mtr', 'Medtr7g062150' => 'mtr', 'MELO3C003138.2' => 'cme', 'MELO3C005187.2' => 'cme', 'MELO3C009252.2' => 'cme', 'MELO3C014481.2' => 'cme', 'MELO3C020616.2' => 'cme', 'MELO3C020617.2' => 'cme', 'MELO3C020618.2' => 'cme', 'Migut.G00328' => 'egut', 'Migut.J00320' => 'egut', 'Migut.L01000' => 'egut', 'Migut.L01953' => 'egut', 'MSTRG.10253' => 'ama', 'MSTRG.19077' => 'ama', 'MSTRG.26780' => 'ama', 'MSTRG.4023' => 'ama', 'MSTRG.5655' => 'ama', 'MSTRG.9992' => 'ama', 'Nitab4.5_0000043g0310' => 'nta', 'Nitab4.5_0000463g0080' => 'nta', 'Nitab4.5_0000705g0170' => 'nta', 'Nitab4.5_0001326g0060' => 'nta', 'Nitab4.5_0001628g0030' => 'nta', 'Nitab4.5_0002103g0110' => 'nta', 'Nitab4.5_0002946g0030' => 'nta', 'Nitab4.5_0004639g0030' => 'nta', 'Nn2g11149' => 'nnu', 'Nn2g13389' => 'nnu', 'Nn4g25326' => 'nnu', 'Nn4g26290' => 'nnu', 'Nn5g29865' => 'nnu', 'Oeu004163.1' => 'oeu', 'Oeu006901.1' => 'oeu', 'Oeu010096.1' => 'oeu', 'Oeu024340.1' => 'oeu', 'Oeu048369.1' => 'oeu', 'Os01g0973000' => 'osa', 'Os03g0273800' => 'osa', 'Os03g0701200' => 'osa', 'Os03g0834050' => 'osa', 'Os07g0634400' => 'osa', 'Peaxi162Scf00092g01414' => 'pax', 'Peaxi162Scf00165g00818' => 'pax', 'Peaxi162Scf00309g00516' => 'pax', 'Peaxi162Scf00774g00218' => 'pax', 'PGR004G1824' => 'pgr', 'PGR004G2606' => 'pgr', 'PGR031G2716' => 'pgr', 'PGR102G2460' => 'pgr', 'PGR142G2599' => 'pgr', 'PGSC0003DMG400000843' => 'stu', 'PGSC0003DMG400008829' => 'stu', 'PGSC0003DMG400030418' => 'stu', 'PGSC0003DMG400031834' => 'stu', 'PGSC0003DMG401028300' => 'stu', 'PGSC0003DMG402028300' => 'stu', 'Phvul.001G219300' => 'pvu', 'Phvul.007G056000' => 'pvu', 'Phvul.007G208000' => 'pvu', 'Phvul.008G119500' => 'pvu', 'Phvul.010G011200' => 'pvu', 'Phvul.010G014800' => 'pvu', 'Phvul.011G062900' => 'pvu', 'Phvul.L007043' => 'pvu', 'Potri.001G242300' => 'ptr', 'Potri.002G185300' => 'ptr', 'Potri.006G086900' => 'ptr', 'Potri.008G151700' => 'ptr', 'Potri.009G033500' => 'ptr', 'Potri.010G089300' => 'ptr', 'Potri.014G110800' => 'ptr', 'Pp3c27_8130' => 'ppa', 'Pp3c6_27410' => 'ppa', 'PRCOL_00001659' => 'pco', 'PRCOL_00001927' => 'pco', 'PRCOL_00003649' => 'pco', 'Prupe.1G011600' => 'ppe', 'Prupe.3G000800' => 'ppe', 'Prupe.3G001100' => 'ppe', 'Prupe.6G072700' => 'ppe', 'Prupe.6G072800' => 'ppe', 'Prupe.6G257300' => 'ppe', 'Prupe.8G033000' => 'ppe', 'Psat0s2633g0080' => 'psa', 'Psat0s3396g0080' => 'psa', 'Psat0s3396g0200' => 'psa', 'Psat3g139080' => 'psa', 'Psat5g285080' => 'psa', 'Psat6g157760' => 'psa', 'Psat6g208440' => 'psa', 'Psat7g215320' => 'psa', 'Psat7g215400' => 'psa', 'Psat7g235600' => 'psa', 'Psat7g235760' => 'psa', 'PSO063G4603' => 'pso', 'PSO210G0182' => 'pso', 'PSO210G0196' => 'pso', 'PSO339G0394' => 'pso', 'PSO339G4127' => 'pso', 'PSO513G0064' => 'pso', 'PSO761G0079' => 'pso', 'QL01p031003' => 'qlo', 'QL01p031078' => 'qlo', 'QL06p003004' => 'qlo', 'QL07p048731' => 'qlo', 'QL09p037427' => 'qlo', 'RcHm_v2.0_Chr3g0466361' => 'rch', 'RcHm_v2.0_Chr3g0485571' => 'rch', 'RcHm_v2.0_Chr4g0416551' => 'rch', 'RcHm_v2.0_Chr5g0065831' => 'rch', 'Rhsim01G0230500' => 'rsi', 'Rhsim05G0194000' => 'rsi', 'Rhsim08G0250400' => 'rsi', 'Sabra02G0131000' => 'sbr', 'Sabra06G0066300' => 'sbr', 'Sabra08G0115500' => 'sbr', 'Sabra09G0023900' => 'sbr', 'Sabra10G0054000' => 'sbr', 'Sabra14G0081500' => 'sbr', 'Sabra16G0147100' => 'sbr', 'SalBow2G2957' => 'sbo', 'SalBow4G3320' => 'sbo', 'SalBow8G1894' => 'sbo', 'Sc07g0007950' => 'sci', 'Sc12g0001360' => 'sci', 'Sc13g0004330' => 'sci', 'Sc20g0005010' => 'sci', 'Sed0000361' => 'sed', 'Sed0001706' => 'sed', 'Sed0002422' => 'sed', 'Sed0004029' => 'sed', 'Sed0004602' => 'sed', 'Sed0004943' => 'sed', 'Sed0008646' => 'sed', 'Sed0023313' => 'sed', 'Sed0024843' => 'sed', 'SEGI_00081' => 'sgi', 'SEGI_00947' => 'sgi', 'SEGI_04046' => 'sgi', 'SEGI_06880' => 'sgi', 'SEGI_09736' => 'sgi', 'SEGI_12741' => 'sgi', 'SEGI_14530' => 'sgi', 'SEGI_20705' => 'sgi', 'SEGI_26088' => 'sgi', 'SEGI_28323' => 'sgi', 'SEGI_33343' => 'sgi', 'SGA_v2.0_scaffold126G33775' => 'sas', 'SGA_v2.0_scaffold2G01337' => 'sas', 'SGA_v2.0_scaffold38G15006' => 'sas', 'SGA_v2.0_scaffold39G15264' => 'sas', 'SGA_v2.0_scaffold453G51880' => 'sas', 'SHI12696' => 'shi', 'SMO367G1096' => 'smo', 'Solyc01g068630.3' => 'sly', 'Solyc05g011880.3' => 'sly', 'Solyc06g076300.3' => 'sly', 'Solyc09g010940.4' => 'sly', 'Solyc09g075890.3' => 'sly', 'Sopen01g030560' => 'spe', 'Sopen05g006630' => 'spe', 'Sopen06g032720' => 'spe', 'Sopen09g005660' => 'spe', 'Sopen09g030690' => 'spe', 'Sp4g14540' => 'spa', 'Sp4g20030' => 'spa', 'Sp5g01320' => 'spa', 'Sp6g21170' => 'spa', 'Sp6g21180' => 'spa', 'Sp6g21190' => 'spa', 'Sp6g40220' => 'spa', 'TAR362G0122' => 'tar', 'TAR362G1338' => 'tar', 'TAR369G0590' => 'tar', 'TAR371G0824' => 'tar', 'TAR622G1429' => 'tar', 'TAR623G0734' => 'tar', 'TAR625G0441' => 'tar', 'TAR629G0976' => 'tar', 'TAR633G1195' => 'tar', 'TAR636G2660' => 'tar', 'THA.LOC104799440' => 'tha', 'THA.LOC104800966' => 'tha', 'THA.LOC104806559' => 'tha', 'THA.LOC104810765' => 'tha', 'THA.LOC104816266' => 'tha', 'THA.LOC104817419' => 'tha', 'THA.LOC104827021' => 'tha', 'Thecc.01G327400' => 'tca', 'Thecc.04G229200' => 'tca', 'Thecc.05G037400' => 'tca', 'Thecc.09G318600' => 'tca', 'Thecc.09G318700' => 'tca', 'Thhalv10006238m.g' => 'esa', 'Thhalv10014321m.g' => 'esa', 'Thhalv10014335m.g' => 'esa', 'Thhalv10015826m.g' => 'esa', 'Thhalv10017107m.g' => 'esa', 'Thhalv10017180m.g' => 'esa', 'Thhalv10029339m.g' => 'esa', 'TPR.G1699' => 'tpr', 'TPR.G23609' => 'tpr', 'TPR.G3081' => 'tpr', 'TPR.G40397' => 'tpr', 'TPR.G5522' => 'tpr', 'TPR.G5618' => 'tpr', 'TPR.G5626' => 'tpr', 'TWI09G1632' => 'twi', 'TWI23G1230' => 'twi', 'TWI53G1064' => 'twi', 'TWI59G0751' => 'twi', 'TWI74G0947' => 'twi', 'TWI77G0337' => 'twi', 'TWI79G1254' => 'twi', 'unitig_0.g2341' => 'ugi', 'unitig_26.g10006' => 'ugi', 'unitig_26.g10008' => 'ugi', 'unitig_26.g9192' => 'ugi', 'vmacro14547' => 'vma', 'vmacro15333' => 'vma', 'vmacro18743' => 'vma', 'vmacro20166' => 'vma', 'VMungo0331G0523' => 'vmu', 'VMungo0331G1202' => 'vmu', 'VMungo0720G1228' => 'vmu', 'VMungo0720G1514' => 'vmu', 'VMungo1080G0169' => 'vmu', 'VMungo1127G1475' => 'vmu', 'VMungo1383G1208' => 'vmu', 'VMungo1383G1698' => 'vmu', 'Zm00001eb012270' => 'zma', 'Zm00001eb054100' => 'zma', 'Zm00001eb063350' => 'zma', 'Zm00001eb328560' => 'zma', 'Zm00001eb342820' => 'zma', 'Zm00001eb362210' => 'zma', 'Zm00001eb397730' => 'zma', 'Zm00001eb399750' => 'zma' ), 'gf_id' => 'HOM05D000959', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000959' ), 'data_identifier' => 'HOM05D000959', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000959', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '622', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p07100' => 'bna', 'A03p11720' => 'bna', 'A05p08300' => 'bna', 'A05p13380' => 'bna', 'A09p54130' => 'bna', 'A10p16690' => 'bna', 'A10p16700' => 'bna', 'A10p33390' => 'bna', 'Aa31LG10G16020' => 'aar', 'Aa31LG1G11810' => 'aar', 'Aa31LG1G11830' => 'aar', 'Aa31LG1G22510' => 'aar', 'Aa31LG5G4890' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5793' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2310' => 'aag', 'Actinidia08499' => 'ach', 'Actinidia11262' => 'ach', 'Actinidia23926' => 'ach', 'Actinidia34420' => 'ach', 'Actinidia36970' => 'ach', 'Ah.02g111220' => 'amhyb', 'Ah.15g097750' => 'amhyb', 'AL4G27500' => 'aly', 'AL6G11470' => 'aly', 'AL8G35950' => 'aly', 'AL8G35960' => 'aly', 'AL8G35970' => 'aly', 'Aqoxy1G00912' => 'aox', 'Aqoxy2G02253' => 'aox', 'Aqoxy2G02411' => 'aox', 'Aqoxy5G00485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BZ66YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K8ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM4FUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6BF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HFV7XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25JBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0YNNV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MAKK6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P70IT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP2Z6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V61LZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YWP64R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3S9AI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7PGHH' => 'arhy', 'AT2G32150' => 'ath', 'AT3G62040' => 'ath', 'AT5G02230' => 'ath', 'AT5G59480' => 'ath', 'AT5G59490' => 'ath', 'ATR0332G060' => 'atr', 'ATR0559G190' => 'atr', 'ATR0693G294' => 'atr', 'Atru.chr3.3975' => 'acertr', 'Atru.chr3.3976' => 'acertr', 'Atru.chr3.3977' => 'acertr', 'Atru.chr4.2498' => 'acertr', 'Atru.chr5.838' => 'acertr', 'Atru.chr8.1990' => 'acertr', 'Atru.chr8.1991' => 'acertr', 'Atru.chr8.1992' => 'acertr', 'AUR62001759' => 'cqu', 'AUR62009545' => 'cqu', 'AUR62010474' => 'cqu', 'AUR62025820' => 'cqu', 'AUR62030422' => 'cqu', 'AUR62033605' => 'cqu', 'AUR62038615' => 'cqu', 'AUR62041347' => 'cqu', 'BcaB01g04574' => 'bca', 'BcaB02g09263' => 'bca', 'BcaB02g10453' => 'bca', 'BcaB05g22513' => 'bca', 'BcaB08g36253' => 'bca', 'BcaB08g36254' => 'bca', 'BcaC01g06519' => 'bca', 'BcaC02g11889' => 'bca', 'BcaC03g14010' => 'bca', 'BcaC03g18439' => 'bca', 'BcaC04g19765' => 'bca', 'BcaC09g48432' => 'bca', 'BcaNung07302' => 'bca', 'BolC2t06040H' => 'bol', 'BolC2t07346H' => 'bol', 'BolC3t13817H' => 'bol', 'BolC4t22625H' => 'bol', 'BolC4t23297H' => 'bol', 'BolC8t51278H' => 'bol', 'BolC9t58050H' => 'bol', 'BolC9t58051H' => 'bol', 'BolC9t60163H' => 'bol', 'BraA02t04712Z' => 'bra', 'BraA02t05791Z' => 'bra', 'BraA03t10483Z' => 'bra', 'BraA05t19795Z' => 'bra', 'BraA05t20276Z' => 'bra', 'BraA09t40827Z' => 'bra', 'BraA10t43750Z' => 'bra', 'BraA10t43751Z' => 'bra', 'BraA10t45370Z' => 'bra', 'C02p00400' => 'bna', 'C02p12460' => 'bna', 'C03p13680' => 'bna', 'C04p10270' => 'bna', 'C04p17500' => 'bna', 'C08p37010' => 'bna', 'C09p51880' => 'bna', 'C09p51890' => 'bna', 'C09p74300' => 'bna', 'CAN.G179.26' => 'can', 'CAN.G3384.1' => 'can', 'CAN.G394.68' => 'can', 'CAN.G907.13' => 'can', 'CANSAT11G0012' => 'cansat', 'CANSAT25G1586' => 'cansat', 'CANSAT35G0735' => 'cansat', 'CANSAT54G0556' => 'cansat', 'CANSAT64G0356' => 'cansat', 'CANSAT78G2042' => 'cansat', 'CARHR125920' => 'chi', 'CARHR131910' => 'chi', 'CARHR172390' => 'chi', 'CARHR211140' => 'chi', 'CARHR285850' => 'chi', 'CARHR285860' => 'chi', 'Carub.0004s1347' => 'cru', 'Carub.0004s1960' => 'cru', 'Carub.0005s2880' => 'cru', 'Carub.0006s0107' => 'cru', 'Carub.0008s2015' => 'cru', 'Carub.0008s2016' => 'cru', 'Carub.0008s2017' => 'cru', 'Ca_01315_v3' => 'car', 'Ca_05063_v3' => 'car', 'Ca_10231_v3' => 'car', 'Ca_10913_v3' => 'car', 'Ca_19156_v3' => 'car', 'Ca_23644_v3' => 'car', 'Ca_26735_v3' => 'car', 'Cc01_g13130' => 'ccan', 'Cc02_g21690' => 'ccan', 'Cc03_g03600' => 'ccan', 'Cc06_g02510' => 'ccan', 'CDE02G1265' => 'cde', 'CDE05G0415' => 'cde', 'CDE08G1082' => 'cde', 'Cfa005780' => 'cfa', 'Cfa011522' => 'cfa', 'Cfa011523' => 'cfa', 'Cfa015627' => 'cfa', 'Cfa017359' => 'cfa', 'Ciclev10005687m.g' => 'ccl', 'Ciclev10012173m.g' => 'ccl', 'Ciclev10021621m.g' => 'ccl', 'Ciclev10028968m.g' => 'ccl', 'Ciclev10029907m.g' => 'ccl', 'CiPaw.01G164800' => 'cil', 'CiPaw.07G083700' => 'cil', 'CiPaw.07G127000' => 'cil', 'CiPaw.07G136900' => 'cil', 'CiPaw.08G081700' => 'cil', 'CiPaw.09G194600' => 'cil', 'CiPaw.10G146500' => 'cil', 'CiPaw.13G091500' => 'cil', 'CiPaw.13G091600' => 'cil', 'ClCG00G003390' => 'cla', 'ClCG01G007220' => 'cla', 'ClCG03G001370' => 'cla', 'ClCG04G008100' => 'cla', 'ClCG06G006110' => 'cla', 'ClCG06G006130' => 'cla', 'ClCG10G021210' => 'cla', 'COL.COLO4_07648' => 'col', 'COL.COLO4_07650' => 'col', 'COL.COLO4_07651' => 'col', 'COL.COLO4_14780' => 'col', 'COL.COLO4_18546' => 'col', 'COL.COLO4_18547' => 'col', 'COL.COLO4_23103' => 'col', 'COL.COLO4_30419' => 'col', 'COL.COLO4_34232' => 'col', 'Cpa.g.sc169.20' => 'cpa', 'Cpa.g.sc57.45' => 'cpa', 'Cpa.g.sc58.124' => 'cpa', 'Cpa.g.sc58.125' => 'cpa', 'Cpa.g.sc81.118' => 'cpa', 'Cpa.g.sc81.119' => 'cpa', 'Cre12.g524700' => 'cre', 'CsaV3_1G034430' => 'csa', 'CsaV3_1G034440' => 'csa', 'CsaV3_1G034450' => 'csa', 'CsaV3_3G034830' => 'csa', 'CsaV3_4G025090' => 'csa', 'CsaV3_5G018660' => 'csa', 'CsaV3_6G038160' => 'csa', 'CSS0003447' => 'camsi', 'CSS0017840' => 'camsi', 'CSS0019260' => 'camsi', 'CSS0040375' => 'camsi', 'CSS0042533' => 'camsi', 'DCAR_005960' => 'dca', 'DCAR_012104' => 'dca', 'DCAR_012105' => 'dca', 'DCAR_012293' => 'dca', 'DCAR_015632' => 'dca', 'DCAR_024602' => 'dca', 'DCAR_028752' => 'dca', 'Dinv06261' => 'din', 'Dinv13982' => 'din', 'Dinv17029' => 'din', 'Dinv18463' => 'din', 'Dinv33181' => 'din', 'Dinv35585' => 'din', 'Dinv37161' => 'din', 'Dinv42977' => 'din', 'Dinv43122' => 'din', 'Dinv44517' => 'din', 'Duzib093G0256' => 'dzi', 'Duzib106G1254' => 'dzi', 'Duzib128G1789' => 'dzi', 'Duzib133G0633' => 'dzi', 'Duzib138G0510' => 'dzi', 'Duzib150G1084' => 'dzi', 'Duzib168G0488' => 'dzi', 'Duzib168G1523' => 'dzi', 'Duzib170G0133' => 'dzi', 'ECA234G1433' => 'eca', 'ECA236G1432' => 'eca', 'ECA236G2256' => 'eca', 'ECA236G2365' => 'eca', 'ECA236G4830' => 'eca', 'ECA248G1505' => 'eca', 'EL10Ac3g06431' => 'bvu', 'EL10Ac5g12577' => 'bvu', 'EL10Ac6g13533' => 'bvu', 'EL10Ac7g16045' => 'bvu', 'Eucgr.A01281' => 'egr', 'Eucgr.B02326' => 'egr', 'Eucgr.H03532' => 'egr', 'Eucgr.K00553' => 'egr', 'Eucgr.K03116' => 'egr', 'FAN02G3963' => 'fan', 'FAN05G0438' => 'fan', 'FAN09G2434' => 'fan', 'FAN12G3984' => 'fan', 'FAN14G0798' => 'fan', 'FAN17G0652' => 'fan', 'FAN19G1988' => 'fan', 'FAN22G0632' => 'fan', 'FAN23G0387' => 'fan', 'FAN26G1323' => 'fan', 'FAN28G0666' => 'fan', 'FvH4_1g26080' => 'fve', 'FvH4_3g36780' => 'fve', 'FvH4_4g15270' => 'fve', 'FvH4_6g13490' => 'fve', 'Glyma.01G098700' => 'gma', 'Glyma.03G065900' => 'gma', 'Glyma.03G073754' => 'gma', 'Glyma.03G073758' => 'gma', 'Glyma.03G083200' => 'gma', 'Glyma.03G225500' => 'gma', 'Glyma.05G037766' => 'gma', 'Glyma.07G133500' => 'gma', 'Glyma.10G139400' => 'gma', 'Glyma.10G248900' => 'gma', 'Glyma.11G137800' => 'gma', 'Glyma.12G061300' => 'gma', 'Glyma.13G337900' => 'gma', 'Glyma.15G036600' => 'gma', 'Glyma.18G182800' => 'gma', 'Glyma.19G222500' => 'gma', 'Glyma.20G144800' => 'gma', 'Gohir.A01G222000' => 'ghi', 'Gohir.A03G044000' => 'ghi', 'Gohir.A03G044100' => 'ghi', 'Gohir.A04G083100' => 'ghi', 'Gohir.A07G127200' => 'ghi', 'Gohir.A07G132400' => 'ghi', 'Gohir.A08G000700' => 'ghi', 'Gohir.A11G327300' => 'ghi', 'Gohir.D01G211500' => 'ghi', 'Gohir.D03G123400' => 'ghi', 'Gohir.D03G123500' => 'ghi', 'Gohir.D04G121800' => 'ghi', 'Gohir.D07G131500' => 'ghi', 'Gohir.D07G136600' => 'ghi', 'Gohir.D08G011600' => 'ghi', 'Gohir.D11G346200' => 'ghi', 'Gorai.001G142800' => 'gra', 'Gorai.001G148700' => 'gra', 'Gorai.002G257300' => 'gra', 'Gorai.003G130000' => 'gra', 'Gorai.003G130100' => 'gra', 'Gorai.004G005300' => 'gra', 'Gorai.007G376500' => 'gra', 'Gorai.012G104700' => 'gra', 'GSVIVG01017946001' => 'vvi', 'GSVIVG01024928001' => 'vvi', 'GSVIVG01028227001' => 'vvi', 'GSVIVG01034151001' => 'vvi', 'HanXRQChr05g0135031' => 'han', 'HanXRQChr05g0135041' => 'han', 'HanXRQChr05g0140021' => 'han', 'HanXRQChr06g0178981' => 'han', 'HanXRQChr07g0188251' => 'han', 'HanXRQChr08g0235311' => 'han', 'HanXRQChr09g0271011' => 'han', 'HanXRQChr10g0293321' => 'han', 'HanXRQChr13g0388171' => 'han', 'Haze_00916' => 'cav', 'Haze_05063' => 'cav', 'Haze_20814' => 'cav', 'Haze_24128' => 'cav', 'Hma1.2p1_0745F.1_g212010' => 'hma', 'Hma1.2p1_0757F.1_g213260' => 'hma', 'Hma1.2p1_0936F.1_g238840' => 'hma', 'Hma1.2p1_1735F.1_g299890' => 'hma', 'Hma1.2p1_1861F.1_g305685' => 'hma', 'HPP92_003397' => 'vpl', 'HPP92_012597' => 'vpl', 'HPP92_015520' => 'vpl', 'HPP92_015539' => 'vpl', 'HPP92_020373' => 'vpl', 'Hund04938' => 'sun', 'Hund10677' => 'sun', 'Hund11033' => 'sun', 'Hund12155' => 'sun', 'Lalb_Chr01g0022551' => 'lal', 'Lalb_Chr03g0042341' => 'lal', 'Lalb_Chr07g0192931' => 'lal', 'Lalb_Chr12g0209551' => 'lal', 'Lalb_Chr19g0125251' => 'lal', 'Lalb_Chr19g0137891' => 'lal', 'Lalb_Chr21g0304641' => 'lal', 'Lalb_Chr21g0309881' => 'lal', 'Lj1A5T12' => 'lonja', 'Lj1C148G10' => 'lonja', 'Lj2A93T83' => 'lonja', 'Lj3A738G68' => 'lonja', 'Lj3C966T1' => 'lonja', 'Lj3g0018958' => 'lja', 'Lj3g0021831' => 'lja', 'Lj3g0025443' => 'lja', 'Lj4g0026809' => 'lja', 'Lj5g0012558' => 'lja', 'Lj5g0021586' => 'lja', 'Lsat_1_v5_gn_5_156840' => 'lsa', 'Lsat_1_v5_gn_8_73460' => 'lsa', 'Lsat_1_v5_gn_8_73481' => 'lsa', 'Lsat_1_v5_gn_9_31601' => 'lsa', 'Lsat_1_v5_gn_9_77320' => 'lsa', 'Manes.01G171300' => 'mes', 'Manes.01G171400' => 'mes', 'Manes.01G236100' => 'mes', 'Manes.02G130500' => 'mes', 'Manes.02G130600' => 'mes', 'Manes.03G180200' => 'mes', 'Manes.05G007000' => 'mes', 'Manes.08G084400' => 'mes', 'Manes.09G092600' => 'mes', 'Manes.15G027900' => 'mes', 'MBI04_g40948_MAGBIO' => 'mbi', 'MBI14_g12123_MAGBIO' => 'mbi', 'MBI18_g28915_MAGBIO' => 'mbi', 'MCO09G053' => 'mco', 'MCO11G782' => 'mco', 'MCO15G215' => 'mco', 'MD03G1088500' => 'mdo', 'MD03G1088600' => 'mdo', 'MD04G1130800' => 'mdo', 'MD09G1291700' => 'mdo', 'MD11G1097500' => 'mdo', 'MD11G1097600' => 'mdo', 'MD12G1143900' => 'mdo', 'MD13G1191400' => 'mdo', 'MD16G1191500' => 'mdo', 'Medtr1g085570' => 'mtr', 'Medtr1g104610' => 'mtr', 'Medtr2g097520' => 'mtr', 'Medtr4g021800' => 'mtr', 'Medtr4g021825' => 'mtr', 'Medtr4g064270' => 'mtr', 'Medtr4g064380' => 'mtr', 'Medtr7g062150' => 'mtr', 'MELO3C003138.2' => 'cme', 'MELO3C005187.2' => 'cme', 'MELO3C009252.2' => 'cme', 'MELO3C014481.2' => 'cme', 'MELO3C020616.2' => 'cme', 'MELO3C020617.2' => 'cme', 'MELO3C020618.2' => 'cme', 'Migut.G00328' => 'egut', 'Migut.J00320' => 'egut', 'Migut.L01000' => 'egut', 'Migut.L01953' => 'egut', 'MSTRG.10253' => 'ama', 'MSTRG.19077' => 'ama', 'MSTRG.26780' => 'ama', 'MSTRG.4023' => 'ama', 'MSTRG.5655' => 'ama', 'MSTRG.9992' => 'ama', 'Nitab4.5_0000043g0310' => 'nta', 'Nitab4.5_0000463g0080' => 'nta', 'Nitab4.5_0000705g0170' => 'nta', 'Nitab4.5_0001326g0060' => 'nta', 'Nitab4.5_0001628g0030' => 'nta', 'Nitab4.5_0002103g0110' => 'nta', 'Nitab4.5_0002946g0030' => 'nta', 'Nitab4.5_0004639g0030' => 'nta', 'Nn2g11149' => 'nnu', 'Nn2g13389' => 'nnu', 'Nn4g25326' => 'nnu', 'Nn4g26290' => 'nnu', 'Nn5g29865' => 'nnu', 'Oeu004163.1' => 'oeu', 'Oeu006901.1' => 'oeu', 'Oeu010096.1' => 'oeu', 'Oeu024340.1' => 'oeu', 'Oeu048369.1' => 'oeu', 'Os01g0973000' => 'osa', 'Os03g0273800' => 'osa', 'Os03g0701200' => 'osa', 'Os03g0834050' => 'osa', 'Os07g0634400' => 'osa', 'Peaxi162Scf00092g01414' => 'pax', 'Peaxi162Scf00165g00818' => 'pax', 'Peaxi162Scf00309g00516' => 'pax', 'Peaxi162Scf00774g00218' => 'pax', 'PGR004G1824' => 'pgr', 'PGR004G2606' => 'pgr', 'PGR031G2716' => 'pgr', 'PGR102G2460' => 'pgr', 'PGR142G2599' => 'pgr', 'PGSC0003DMG400000843' => 'stu', 'PGSC0003DMG400008829' => 'stu', 'PGSC0003DMG400030418' => 'stu', 'PGSC0003DMG400031834' => 'stu', 'PGSC0003DMG401028300' => 'stu', 'PGSC0003DMG402028300' => 'stu', 'Phvul.001G219300' => 'pvu', 'Phvul.007G056000' => 'pvu', 'Phvul.007G208000' => 'pvu', 'Phvul.008G119500' => 'pvu', 'Phvul.010G011200' => 'pvu', 'Phvul.010G014800' => 'pvu', 'Phvul.011G062900' => 'pvu', 'Phvul.L007043' => 'pvu', 'Potri.001G242300' => 'ptr', 'Potri.002G185300' => 'ptr', 'Potri.006G086900' => 'ptr', 'Potri.008G151700' => 'ptr', 'Potri.009G033500' => 'ptr', 'Potri.010G089300' => 'ptr', 'Potri.014G110800' => 'ptr', 'Pp3c27_8130' => 'ppa', 'Pp3c6_27410' => 'ppa', 'PRCOL_00001659' => 'pco', 'PRCOL_00001927' => 'pco', 'PRCOL_00003649' => 'pco', 'Prupe.1G011600' => 'ppe', 'Prupe.3G000800' => 'ppe', 'Prupe.3G001100' => 'ppe', 'Prupe.6G072700' => 'ppe', 'Prupe.6G072800' => 'ppe', 'Prupe.6G257300' => 'ppe', 'Prupe.8G033000' => 'ppe', 'Psat0s2633g0080' => 'psa', 'Psat0s3396g0080' => 'psa', 'Psat0s3396g0200' => 'psa', 'Psat3g139080' => 'psa', 'Psat5g285080' => 'psa', 'Psat6g157760' => 'psa', 'Psat6g208440' => 'psa', 'Psat7g215320' => 'psa', 'Psat7g215400' => 'psa', 'Psat7g235600' => 'psa', 'Psat7g235760' => 'psa', 'PSO063G4603' => 'pso', 'PSO210G0182' => 'pso', 'PSO210G0196' => 'pso', 'PSO339G0394' => 'pso', 'PSO339G4127' => 'pso', 'PSO513G0064' => 'pso', 'PSO761G0079' => 'pso', 'QL01p031003' => 'qlo', 'QL01p031078' => 'qlo', 'QL06p003004' => 'qlo', 'QL07p048731' => 'qlo', 'QL09p037427' => 'qlo', 'RcHm_v2.0_Chr3g0466361' => 'rch', 'RcHm_v2.0_Chr3g0485571' => 'rch', 'RcHm_v2.0_Chr4g0416551' => 'rch', 'RcHm_v2.0_Chr5g0065831' => 'rch', 'Rhsim01G0230500' => 'rsi', 'Rhsim05G0194000' => 'rsi', 'Rhsim08G0250400' => 'rsi', 'Sabra02G0131000' => 'sbr', 'Sabra06G0066300' => 'sbr', 'Sabra08G0115500' => 'sbr', 'Sabra09G0023900' => 'sbr', 'Sabra10G0054000' => 'sbr', 'Sabra14G0081500' => 'sbr', 'Sabra16G0147100' => 'sbr', 'SalBow2G2957' => 'sbo', 'SalBow4G3320' => 'sbo', 'SalBow8G1894' => 'sbo', 'Sc07g0007950' => 'sci', 'Sc12g0001360' => 'sci', 'Sc13g0004330' => 'sci', 'Sc20g0005010' => 'sci', 'Sed0000361' => 'sed', 'Sed0001706' => 'sed', 'Sed0002422' => 'sed', 'Sed0004029' => 'sed', 'Sed0004602' => 'sed', 'Sed0004943' => 'sed', 'Sed0008646' => 'sed', 'Sed0023313' => 'sed', 'Sed0024843' => 'sed', 'SEGI_00081' => 'sgi', 'SEGI_00947' => 'sgi', 'SEGI_04046' => 'sgi', 'SEGI_06880' => 'sgi', 'SEGI_09736' => 'sgi', 'SEGI_12741' => 'sgi', 'SEGI_14530' => 'sgi', 'SEGI_20705' => 'sgi', 'SEGI_26088' => 'sgi', 'SEGI_28323' => 'sgi', 'SEGI_33343' => 'sgi', 'SGA_v2.0_scaffold126G33775' => 'sas', 'SGA_v2.0_scaffold2G01337' => 'sas', 'SGA_v2.0_scaffold38G15006' => 'sas', 'SGA_v2.0_scaffold39G15264' => 'sas', 'SGA_v2.0_scaffold453G51880' => 'sas', 'SHI12696' => 'shi', 'SMO367G1096' => 'smo', 'Solyc01g068630.3' => 'sly', 'Solyc05g011880.3' => 'sly', 'Solyc06g076300.3' => 'sly', 'Solyc09g010940.4' => 'sly', 'Solyc09g075890.3' => 'sly', 'Sopen01g030560' => 'spe', 'Sopen05g006630' => 'spe', 'Sopen06g032720' => 'spe', 'Sopen09g005660' => 'spe', 'Sopen09g030690' => 'spe', 'Sp4g14540' => 'spa', 'Sp4g20030' => 'spa', 'Sp5g01320' => 'spa', 'Sp6g21170' => 'spa', 'Sp6g21180' => 'spa', 'Sp6g21190' => 'spa', 'Sp6g40220' => 'spa', 'TAR362G0122' => 'tar', 'TAR362G1338' => 'tar', 'TAR369G0590' => 'tar', 'TAR371G0824' => 'tar', 'TAR622G1429' => 'tar', 'TAR623G0734' => 'tar', 'TAR625G0441' => 'tar', 'TAR629G0976' => 'tar', 'TAR633G1195' => 'tar', 'TAR636G2660' => 'tar', 'THA.LOC104799440' => 'tha', 'THA.LOC104800966' => 'tha', 'THA.LOC104806559' => 'tha', 'THA.LOC104810765' => 'tha', 'THA.LOC104816266' => 'tha', 'THA.LOC104817419' => 'tha', 'THA.LOC104827021' => 'tha', 'Thecc.01G327400' => 'tca', 'Thecc.04G229200' => 'tca', 'Thecc.05G037400' => 'tca', 'Thecc.09G318600' => 'tca', 'Thecc.09G318700' => 'tca', 'Thhalv10006238m.g' => 'esa', 'Thhalv10014321m.g' => 'esa', 'Thhalv10014335m.g' => 'esa', 'Thhalv10015826m.g' => 'esa', 'Thhalv10017107m.g' => 'esa', 'Thhalv10017180m.g' => 'esa', 'Thhalv10029339m.g' => 'esa', 'TPR.G1699' => 'tpr', 'TPR.G23609' => 'tpr', 'TPR.G3081' => 'tpr', 'TPR.G40397' => 'tpr', 'TPR.G5522' => 'tpr', 'TPR.G5618' => 'tpr', 'TPR.G5626' => 'tpr', 'TWI09G1632' => 'twi', 'TWI23G1230' => 'twi', 'TWI53G1064' => 'twi', 'TWI59G0751' => 'twi', 'TWI74G0947' => 'twi', 'TWI77G0337' => 'twi', 'TWI79G1254' => 'twi', 'unitig_0.g2341' => 'ugi', 'unitig_26.g10006' => 'ugi', 'unitig_26.g10008' => 'ugi', 'unitig_26.g9192' => 'ugi', 'vmacro14547' => 'vma', 'vmacro15333' => 'vma', 'vmacro18743' => 'vma', 'vmacro20166' => 'vma', 'VMungo0331G0523' => 'vmu', 'VMungo0331G1202' => 'vmu', 'VMungo0720G1228' => 'vmu', 'VMungo0720G1514' => 'vmu', 'VMungo1080G0169' => 'vmu', 'VMungo1127G1475' => 'vmu', 'VMungo1383G1208' => 'vmu', 'VMungo1383G1698' => 'vmu', 'Zm00001eb012270' => 'zma', 'Zm00001eb054100' => 'zma', 'Zm00001eb063350' => 'zma', 'Zm00001eb328560' => 'zma', 'Zm00001eb342820' => 'zma', 'Zm00001eb362210' => 'zma', 'Zm00001eb397730' => 'zma', 'Zm00001eb399750' => 'zma' ) $gf_id = 'HOM05D000959' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000959' ) $data_identifier = 'HOM05D000959' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 5, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 5, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 10, 'mbi' => (int) 3, 'mco' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 2, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 3, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 11, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399750' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000959', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '622', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p07100' => 'bna', 'A03p11720' => 'bna', 'A05p08300' => 'bna', 'A05p13380' => 'bna', 'A09p54130' => 'bna', 'A10p16690' => 'bna', 'A10p16700' => 'bna', 'A10p33390' => 'bna', 'Aa31LG10G16020' => 'aar', 'Aa31LG1G11810' => 'aar', 'Aa31LG1G11830' => 'aar', 'Aa31LG1G22510' => 'aar', 'Aa31LG5G4890' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5793' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2310' => 'aag', 'Actinidia08499' => 'ach', 'Actinidia11262' => 'ach', 'Actinidia23926' => 'ach', 'Actinidia34420' => 'ach', 'Actinidia36970' => 'ach', 'Ah.02g111220' => 'amhyb', 'Ah.15g097750' => 'amhyb', 'AL4G27500' => 'aly', 'AL6G11470' => 'aly', 'AL8G35950' => 'aly', 'AL8G35960' => 'aly', 'AL8G35970' => 'aly', 'Aqoxy1G00912' => 'aox', 'Aqoxy2G02253' => 'aox', 'Aqoxy2G02411' => 'aox', 'Aqoxy5G00485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BZ66YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K8ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM4FUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6BF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HFV7XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25JBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0YNNV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MAKK6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P70IT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP2Z6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V61LZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YWP64R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3S9AI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7PGHH' => 'arhy', 'AT2G32150' => 'ath', 'AT3G62040' => 'ath', 'AT5G02230' => 'ath', 'AT5G59480' => 'ath', 'AT5G59490' => 'ath', 'ATR0332G060' => 'atr', 'ATR0559G190' => 'atr', 'ATR0693G294' => 'atr', 'Atru.chr3.3975' => 'acertr', 'Atru.chr3.3976' => 'acertr', 'Atru.chr3.3977' => 'acertr', 'Atru.chr4.2498' => 'acertr', 'Atru.chr5.838' => 'acertr', 'Atru.chr8.1990' => 'acertr', 'Atru.chr8.1991' => 'acertr', 'Atru.chr8.1992' => 'acertr', 'AUR62001759' => 'cqu', 'AUR62009545' => 'cqu', 'AUR62010474' => 'cqu', 'AUR62025820' => 'cqu', 'AUR62030422' => 'cqu', 'AUR62033605' => 'cqu', 'AUR62038615' => 'cqu', 'AUR62041347' => 'cqu', 'BcaB01g04574' => 'bca', 'BcaB02g09263' => 'bca', 'BcaB02g10453' => 'bca', 'BcaB05g22513' => 'bca', 'BcaB08g36253' => 'bca', 'BcaB08g36254' => 'bca', 'BcaC01g06519' => 'bca', 'BcaC02g11889' => 'bca', 'BcaC03g14010' => 'bca', 'BcaC03g18439' => 'bca', 'BcaC04g19765' => 'bca', 'BcaC09g48432' => 'bca', 'BcaNung07302' => 'bca', 'BolC2t06040H' => 'bol', 'BolC2t07346H' => 'bol', 'BolC3t13817H' => 'bol', 'BolC4t22625H' => 'bol', 'BolC4t23297H' => 'bol', 'BolC8t51278H' => 'bol', 'BolC9t58050H' => 'bol', 'BolC9t58051H' => 'bol', 'BolC9t60163H' => 'bol', 'BraA02t04712Z' => 'bra', 'BraA02t05791Z' => 'bra', 'BraA03t10483Z' => 'bra', 'BraA05t19795Z' => 'bra', 'BraA05t20276Z' => 'bra', 'BraA09t40827Z' => 'bra', 'BraA10t43750Z' => 'bra', 'BraA10t43751Z' => 'bra', 'BraA10t45370Z' => 'bra', 'C02p00400' => 'bna', 'C02p12460' => 'bna', 'C03p13680' => 'bna', 'C04p10270' => 'bna', 'C04p17500' => 'bna', 'C08p37010' => 'bna', 'C09p51880' => 'bna', 'C09p51890' => 'bna', 'C09p74300' => 'bna', 'CAN.G179.26' => 'can', 'CAN.G3384.1' => 'can', 'CAN.G394.68' => 'can', 'CAN.G907.13' => 'can', 'CANSAT11G0012' => 'cansat', 'CANSAT25G1586' => 'cansat', 'CANSAT35G0735' => 'cansat', 'CANSAT54G0556' => 'cansat', 'CANSAT64G0356' => 'cansat', 'CANSAT78G2042' => 'cansat', 'CARHR125920' => 'chi', 'CARHR131910' => 'chi', 'CARHR172390' => 'chi', 'CARHR211140' => 'chi', 'CARHR285850' => 'chi', 'CARHR285860' => 'chi', 'Carub.0004s1347' => 'cru', 'Carub.0004s1960' => 'cru', 'Carub.0005s2880' => 'cru', 'Carub.0006s0107' => 'cru', 'Carub.0008s2015' => 'cru', 'Carub.0008s2016' => 'cru', 'Carub.0008s2017' => 'cru', 'Ca_01315_v3' => 'car', 'Ca_05063_v3' => 'car', 'Ca_10231_v3' => 'car', 'Ca_10913_v3' => 'car', 'Ca_19156_v3' => 'car', 'Ca_23644_v3' => 'car', 'Ca_26735_v3' => 'car', 'Cc01_g13130' => 'ccan', 'Cc02_g21690' => 'ccan', 'Cc03_g03600' => 'ccan', 'Cc06_g02510' => 'ccan', 'CDE02G1265' => 'cde', 'CDE05G0415' => 'cde', 'CDE08G1082' => 'cde', 'Cfa005780' => 'cfa', 'Cfa011522' => 'cfa', 'Cfa011523' => 'cfa', 'Cfa015627' => 'cfa', 'Cfa017359' => 'cfa', 'Ciclev10005687m.g' => 'ccl', 'Ciclev10012173m.g' => 'ccl', 'Ciclev10021621m.g' => 'ccl', 'Ciclev10028968m.g' => 'ccl', 'Ciclev10029907m.g' => 'ccl', 'CiPaw.01G164800' => 'cil', 'CiPaw.07G083700' => 'cil', 'CiPaw.07G127000' => 'cil', 'CiPaw.07G136900' => 'cil', 'CiPaw.08G081700' => 'cil', 'CiPaw.09G194600' => 'cil', 'CiPaw.10G146500' => 'cil', 'CiPaw.13G091500' => 'cil', 'CiPaw.13G091600' => 'cil', 'ClCG00G003390' => 'cla', 'ClCG01G007220' => 'cla', 'ClCG03G001370' => 'cla', 'ClCG04G008100' => 'cla', 'ClCG06G006110' => 'cla', 'ClCG06G006130' => 'cla', 'ClCG10G021210' => 'cla', 'COL.COLO4_07648' => 'col', 'COL.COLO4_07650' => 'col', 'COL.COLO4_07651' => 'col', 'COL.COLO4_14780' => 'col', 'COL.COLO4_18546' => 'col', 'COL.COLO4_18547' => 'col', 'COL.COLO4_23103' => 'col', 'COL.COLO4_30419' => 'col', 'COL.COLO4_34232' => 'col', 'Cpa.g.sc169.20' => 'cpa', 'Cpa.g.sc57.45' => 'cpa', 'Cpa.g.sc58.124' => 'cpa', 'Cpa.g.sc58.125' => 'cpa', 'Cpa.g.sc81.118' => 'cpa', 'Cpa.g.sc81.119' => 'cpa', 'Cre12.g524700' => 'cre', 'CsaV3_1G034430' => 'csa', 'CsaV3_1G034440' => 'csa', 'CsaV3_1G034450' => 'csa', 'CsaV3_3G034830' => 'csa', 'CsaV3_4G025090' => 'csa', 'CsaV3_5G018660' => 'csa', 'CsaV3_6G038160' => 'csa', 'CSS0003447' => 'camsi', 'CSS0017840' => 'camsi', 'CSS0019260' => 'camsi', 'CSS0040375' => 'camsi', 'CSS0042533' => 'camsi', 'DCAR_005960' => 'dca', 'DCAR_012104' => 'dca', 'DCAR_012105' => 'dca', 'DCAR_012293' => 'dca', 'DCAR_015632' => 'dca', 'DCAR_024602' => 'dca', 'DCAR_028752' => 'dca', 'Dinv06261' => 'din', 'Dinv13982' => 'din', 'Dinv17029' => 'din', 'Dinv18463' => 'din', 'Dinv33181' => 'din', 'Dinv35585' => 'din', 'Dinv37161' => 'din', 'Dinv42977' => 'din', 'Dinv43122' => 'din', 'Dinv44517' => 'din', 'Duzib093G0256' => 'dzi', 'Duzib106G1254' => 'dzi', 'Duzib128G1789' => 'dzi', 'Duzib133G0633' => 'dzi', 'Duzib138G0510' => 'dzi', 'Duzib150G1084' => 'dzi', 'Duzib168G0488' => 'dzi', 'Duzib168G1523' => 'dzi', 'Duzib170G0133' => 'dzi', 'ECA234G1433' => 'eca', 'ECA236G1432' => 'eca', 'ECA236G2256' => 'eca', 'ECA236G2365' => 'eca', 'ECA236G4830' => 'eca', 'ECA248G1505' => 'eca', 'EL10Ac3g06431' => 'bvu', 'EL10Ac5g12577' => 'bvu', 'EL10Ac6g13533' => 'bvu', 'EL10Ac7g16045' => 'bvu', 'Eucgr.A01281' => 'egr', 'Eucgr.B02326' => 'egr', 'Eucgr.H03532' => 'egr', 'Eucgr.K00553' => 'egr', 'Eucgr.K03116' => 'egr', 'FAN02G3963' => 'fan', 'FAN05G0438' => 'fan', 'FAN09G2434' => 'fan', 'FAN12G3984' => 'fan', 'FAN14G0798' => 'fan', 'FAN17G0652' => 'fan', 'FAN19G1988' => 'fan', 'FAN22G0632' => 'fan', 'FAN23G0387' => 'fan', 'FAN26G1323' => 'fan', 'FAN28G0666' => 'fan', 'FvH4_1g26080' => 'fve', 'FvH4_3g36780' => 'fve', 'FvH4_4g15270' => 'fve', 'FvH4_6g13490' => 'fve', 'Glyma.01G098700' => 'gma', 'Glyma.03G065900' => 'gma', 'Glyma.03G073754' => 'gma', 'Glyma.03G073758' => 'gma', 'Glyma.03G083200' => 'gma', 'Glyma.03G225500' => 'gma', 'Glyma.05G037766' => 'gma', 'Glyma.07G133500' => 'gma', 'Glyma.10G139400' => 'gma', 'Glyma.10G248900' => 'gma', 'Glyma.11G137800' => 'gma', 'Glyma.12G061300' => 'gma', 'Glyma.13G337900' => 'gma', 'Glyma.15G036600' => 'gma', 'Glyma.18G182800' => 'gma', 'Glyma.19G222500' => 'gma', 'Glyma.20G144800' => 'gma', 'Gohir.A01G222000' => 'ghi', 'Gohir.A03G044000' => 'ghi', 'Gohir.A03G044100' => 'ghi', 'Gohir.A04G083100' => 'ghi', 'Gohir.A07G127200' => 'ghi', 'Gohir.A07G132400' => 'ghi', 'Gohir.A08G000700' => 'ghi', 'Gohir.A11G327300' => 'ghi', 'Gohir.D01G211500' => 'ghi', 'Gohir.D03G123400' => 'ghi', 'Gohir.D03G123500' => 'ghi', 'Gohir.D04G121800' => 'ghi', 'Gohir.D07G131500' => 'ghi', 'Gohir.D07G136600' => 'ghi', 'Gohir.D08G011600' => 'ghi', 'Gohir.D11G346200' => 'ghi', 'Gorai.001G142800' => 'gra', 'Gorai.001G148700' => 'gra', 'Gorai.002G257300' => 'gra', 'Gorai.003G130000' => 'gra', 'Gorai.003G130100' => 'gra', 'Gorai.004G005300' => 'gra', 'Gorai.007G376500' => 'gra', 'Gorai.012G104700' => 'gra', 'GSVIVG01017946001' => 'vvi', 'GSVIVG01024928001' => 'vvi', 'GSVIVG01028227001' => 'vvi', 'GSVIVG01034151001' => 'vvi', 'HanXRQChr05g0135031' => 'han', 'HanXRQChr05g0135041' => 'han', 'HanXRQChr05g0140021' => 'han', 'HanXRQChr06g0178981' => 'han', 'HanXRQChr07g0188251' => 'han', 'HanXRQChr08g0235311' => 'han', 'HanXRQChr09g0271011' => 'han', 'HanXRQChr10g0293321' => 'han', 'HanXRQChr13g0388171' => 'han', 'Haze_00916' => 'cav', 'Haze_05063' => 'cav', 'Haze_20814' => 'cav', 'Haze_24128' => 'cav', 'Hma1.2p1_0745F.1_g212010' => 'hma', 'Hma1.2p1_0757F.1_g213260' => 'hma', 'Hma1.2p1_0936F.1_g238840' => 'hma', 'Hma1.2p1_1735F.1_g299890' => 'hma', 'Hma1.2p1_1861F.1_g305685' => 'hma', 'HPP92_003397' => 'vpl', 'HPP92_012597' => 'vpl', 'HPP92_015520' => 'vpl', 'HPP92_015539' => 'vpl', 'HPP92_020373' => 'vpl', 'Hund04938' => 'sun', 'Hund10677' => 'sun', 'Hund11033' => 'sun', 'Hund12155' => 'sun', 'Lalb_Chr01g0022551' => 'lal', 'Lalb_Chr03g0042341' => 'lal', 'Lalb_Chr07g0192931' => 'lal', 'Lalb_Chr12g0209551' => 'lal', 'Lalb_Chr19g0125251' => 'lal', 'Lalb_Chr19g0137891' => 'lal', 'Lalb_Chr21g0304641' => 'lal', 'Lalb_Chr21g0309881' => 'lal', 'Lj1A5T12' => 'lonja', 'Lj1C148G10' => 'lonja', 'Lj2A93T83' => 'lonja', 'Lj3A738G68' => 'lonja', 'Lj3C966T1' => 'lonja', 'Lj3g0018958' => 'lja', 'Lj3g0021831' => 'lja', 'Lj3g0025443' => 'lja', 'Lj4g0026809' => 'lja', 'Lj5g0012558' => 'lja', 'Lj5g0021586' => 'lja', 'Lsat_1_v5_gn_5_156840' => 'lsa', 'Lsat_1_v5_gn_8_73460' => 'lsa', 'Lsat_1_v5_gn_8_73481' => 'lsa', 'Lsat_1_v5_gn_9_31601' => 'lsa', 'Lsat_1_v5_gn_9_77320' => 'lsa', 'Manes.01G171300' => 'mes', 'Manes.01G171400' => 'mes', 'Manes.01G236100' => 'mes', 'Manes.02G130500' => 'mes', 'Manes.02G130600' => 'mes', 'Manes.03G180200' => 'mes', 'Manes.05G007000' => 'mes', 'Manes.08G084400' => 'mes', 'Manes.09G092600' => 'mes', 'Manes.15G027900' => 'mes', 'MBI04_g40948_MAGBIO' => 'mbi', 'MBI14_g12123_MAGBIO' => 'mbi', 'MBI18_g28915_MAGBIO' => 'mbi', 'MCO09G053' => 'mco', 'MCO11G782' => 'mco', 'MCO15G215' => 'mco', 'MD03G1088500' => 'mdo', 'MD03G1088600' => 'mdo', 'MD04G1130800' => 'mdo', 'MD09G1291700' => 'mdo', 'MD11G1097500' => 'mdo', 'MD11G1097600' => 'mdo', 'MD12G1143900' => 'mdo', 'MD13G1191400' => 'mdo', 'MD16G1191500' => 'mdo', 'Medtr1g085570' => 'mtr', 'Medtr1g104610' => 'mtr', 'Medtr2g097520' => 'mtr', 'Medtr4g021800' => 'mtr', 'Medtr4g021825' => 'mtr', 'Medtr4g064270' => 'mtr', 'Medtr4g064380' => 'mtr', 'Medtr7g062150' => 'mtr', 'MELO3C003138.2' => 'cme', 'MELO3C005187.2' => 'cme', 'MELO3C009252.2' => 'cme', 'MELO3C014481.2' => 'cme', 'MELO3C020616.2' => 'cme', 'MELO3C020617.2' => 'cme', 'MELO3C020618.2' => 'cme', 'Migut.G00328' => 'egut', 'Migut.J00320' => 'egut', 'Migut.L01000' => 'egut', 'Migut.L01953' => 'egut', 'MSTRG.10253' => 'ama', 'MSTRG.19077' => 'ama', 'MSTRG.26780' => 'ama', 'MSTRG.4023' => 'ama', 'MSTRG.5655' => 'ama', 'MSTRG.9992' => 'ama', 'Nitab4.5_0000043g0310' => 'nta', 'Nitab4.5_0000463g0080' => 'nta', 'Nitab4.5_0000705g0170' => 'nta', 'Nitab4.5_0001326g0060' => 'nta', 'Nitab4.5_0001628g0030' => 'nta', 'Nitab4.5_0002103g0110' => 'nta', 'Nitab4.5_0002946g0030' => 'nta', 'Nitab4.5_0004639g0030' => 'nta', 'Nn2g11149' => 'nnu', 'Nn2g13389' => 'nnu', 'Nn4g25326' => 'nnu', 'Nn4g26290' => 'nnu', 'Nn5g29865' => 'nnu', 'Oeu004163.1' => 'oeu', 'Oeu006901.1' => 'oeu', 'Oeu010096.1' => 'oeu', 'Oeu024340.1' => 'oeu', 'Oeu048369.1' => 'oeu', 'Os01g0973000' => 'osa', 'Os03g0273800' => 'osa', 'Os03g0701200' => 'osa', 'Os03g0834050' => 'osa', 'Os07g0634400' => 'osa', 'Peaxi162Scf00092g01414' => 'pax', 'Peaxi162Scf00165g00818' => 'pax', 'Peaxi162Scf00309g00516' => 'pax', 'Peaxi162Scf00774g00218' => 'pax', 'PGR004G1824' => 'pgr', 'PGR004G2606' => 'pgr', 'PGR031G2716' => 'pgr', 'PGR102G2460' => 'pgr', 'PGR142G2599' => 'pgr', 'PGSC0003DMG400000843' => 'stu', 'PGSC0003DMG400008829' => 'stu', 'PGSC0003DMG400030418' => 'stu', 'PGSC0003DMG400031834' => 'stu', 'PGSC0003DMG401028300' => 'stu', 'PGSC0003DMG402028300' => 'stu', 'Phvul.001G219300' => 'pvu', 'Phvul.007G056000' => 'pvu', 'Phvul.007G208000' => 'pvu', 'Phvul.008G119500' => 'pvu', 'Phvul.010G011200' => 'pvu', 'Phvul.010G014800' => 'pvu', 'Phvul.011G062900' => 'pvu', 'Phvul.L007043' => 'pvu', 'Potri.001G242300' => 'ptr', 'Potri.002G185300' => 'ptr', 'Potri.006G086900' => 'ptr', 'Potri.008G151700' => 'ptr', 'Potri.009G033500' => 'ptr', 'Potri.010G089300' => 'ptr', 'Potri.014G110800' => 'ptr', 'Pp3c27_8130' => 'ppa', 'Pp3c6_27410' => 'ppa', 'PRCOL_00001659' => 'pco', 'PRCOL_00001927' => 'pco', 'PRCOL_00003649' => 'pco', 'Prupe.1G011600' => 'ppe', 'Prupe.3G000800' => 'ppe', 'Prupe.3G001100' => 'ppe', 'Prupe.6G072700' => 'ppe', 'Prupe.6G072800' => 'ppe', 'Prupe.6G257300' => 'ppe', 'Prupe.8G033000' => 'ppe', 'Psat0s2633g0080' => 'psa', 'Psat0s3396g0080' => 'psa', 'Psat0s3396g0200' => 'psa', 'Psat3g139080' => 'psa', 'Psat5g285080' => 'psa', 'Psat6g157760' => 'psa', 'Psat6g208440' => 'psa', 'Psat7g215320' => 'psa', 'Psat7g215400' => 'psa', 'Psat7g235600' => 'psa', 'Psat7g235760' => 'psa', 'PSO063G4603' => 'pso', 'PSO210G0182' => 'pso', 'PSO210G0196' => 'pso', 'PSO339G0394' => 'pso', 'PSO339G4127' => 'pso', 'PSO513G0064' => 'pso', 'PSO761G0079' => 'pso', 'QL01p031003' => 'qlo', 'QL01p031078' => 'qlo', 'QL06p003004' => 'qlo', 'QL07p048731' => 'qlo', 'QL09p037427' => 'qlo', 'RcHm_v2.0_Chr3g0466361' => 'rch', 'RcHm_v2.0_Chr3g0485571' => 'rch', 'RcHm_v2.0_Chr4g0416551' => 'rch', 'RcHm_v2.0_Chr5g0065831' => 'rch', 'Rhsim01G0230500' => 'rsi', 'Rhsim05G0194000' => 'rsi', 'Rhsim08G0250400' => 'rsi', 'Sabra02G0131000' => 'sbr', 'Sabra06G0066300' => 'sbr', 'Sabra08G0115500' => 'sbr', 'Sabra09G0023900' => 'sbr', 'Sabra10G0054000' => 'sbr', 'Sabra14G0081500' => 'sbr', 'Sabra16G0147100' => 'sbr', 'SalBow2G2957' => 'sbo', 'SalBow4G3320' => 'sbo', 'SalBow8G1894' => 'sbo', 'Sc07g0007950' => 'sci', 'Sc12g0001360' => 'sci', 'Sc13g0004330' => 'sci', 'Sc20g0005010' => 'sci', 'Sed0000361' => 'sed', 'Sed0001706' => 'sed', 'Sed0002422' => 'sed', 'Sed0004029' => 'sed', 'Sed0004602' => 'sed', 'Sed0004943' => 'sed', 'Sed0008646' => 'sed', 'Sed0023313' => 'sed', 'Sed0024843' => 'sed', 'SEGI_00081' => 'sgi', 'SEGI_00947' => 'sgi', 'SEGI_04046' => 'sgi', 'SEGI_06880' => 'sgi', 'SEGI_09736' => 'sgi', 'SEGI_12741' => 'sgi', 'SEGI_14530' => 'sgi', 'SEGI_20705' => 'sgi', 'SEGI_26088' => 'sgi', 'SEGI_28323' => 'sgi', 'SEGI_33343' => 'sgi', 'SGA_v2.0_scaffold126G33775' => 'sas', 'SGA_v2.0_scaffold2G01337' => 'sas', 'SGA_v2.0_scaffold38G15006' => 'sas', 'SGA_v2.0_scaffold39G15264' => 'sas', 'SGA_v2.0_scaffold453G51880' => 'sas', 'SHI12696' => 'shi', 'SMO367G1096' => 'smo', 'Solyc01g068630.3' => 'sly', 'Solyc05g011880.3' => 'sly', 'Solyc06g076300.3' => 'sly', 'Solyc09g010940.4' => 'sly', 'Solyc09g075890.3' => 'sly', 'Sopen01g030560' => 'spe', 'Sopen05g006630' => 'spe', 'Sopen06g032720' => 'spe', 'Sopen09g005660' => 'spe', 'Sopen09g030690' => 'spe', 'Sp4g14540' => 'spa', 'Sp4g20030' => 'spa', 'Sp5g01320' => 'spa', 'Sp6g21170' => 'spa', 'Sp6g21180' => 'spa', 'Sp6g21190' => 'spa', 'Sp6g40220' => 'spa', 'TAR362G0122' => 'tar', 'TAR362G1338' => 'tar', 'TAR369G0590' => 'tar', 'TAR371G0824' => 'tar', 'TAR622G1429' => 'tar', 'TAR623G0734' => 'tar', 'TAR625G0441' => 'tar', 'TAR629G0976' => 'tar', 'TAR633G1195' => 'tar', 'TAR636G2660' => 'tar', 'THA.LOC104799440' => 'tha', 'THA.LOC104800966' => 'tha', 'THA.LOC104806559' => 'tha', 'THA.LOC104810765' => 'tha', 'THA.LOC104816266' => 'tha', 'THA.LOC104817419' => 'tha', 'THA.LOC104827021' => 'tha', 'Thecc.01G327400' => 'tca', 'Thecc.04G229200' => 'tca', 'Thecc.05G037400' => 'tca', 'Thecc.09G318600' => 'tca', 'Thecc.09G318700' => 'tca', 'Thhalv10006238m.g' => 'esa', 'Thhalv10014321m.g' => 'esa', 'Thhalv10014335m.g' => 'esa', 'Thhalv10015826m.g' => 'esa', 'Thhalv10017107m.g' => 'esa', 'Thhalv10017180m.g' => 'esa', 'Thhalv10029339m.g' => 'esa', 'TPR.G1699' => 'tpr', 'TPR.G23609' => 'tpr', 'TPR.G3081' => 'tpr', 'TPR.G40397' => 'tpr', 'TPR.G5522' => 'tpr', 'TPR.G5618' => 'tpr', 'TPR.G5626' => 'tpr', 'TWI09G1632' => 'twi', 'TWI23G1230' => 'twi', 'TWI53G1064' => 'twi', 'TWI59G0751' => 'twi', 'TWI74G0947' => 'twi', 'TWI77G0337' => 'twi', 'TWI79G1254' => 'twi', 'unitig_0.g2341' => 'ugi', 'unitig_26.g10006' => 'ugi', 'unitig_26.g10008' => 'ugi', 'unitig_26.g9192' => 'ugi', 'vmacro14547' => 'vma', 'vmacro15333' => 'vma', 'vmacro18743' => 'vma', 'vmacro20166' => 'vma', 'VMungo0331G0523' => 'vmu', 'VMungo0331G1202' => 'vmu', 'VMungo0720G1228' => 'vmu', 'VMungo0720G1514' => 'vmu', 'VMungo1080G0169' => 'vmu', 'VMungo1127G1475' => 'vmu', 'VMungo1383G1208' => 'vmu', 'VMungo1383G1698' => 'vmu', 'Zm00001eb012270' => 'zma', 'Zm00001eb054100' => 'zma', 'Zm00001eb063350' => 'zma', 'Zm00001eb328560' => 'zma', 'Zm00001eb342820' => 'zma', 'Zm00001eb362210' => 'zma', 'Zm00001eb397730' => 'zma', 'Zm00001eb399750' => 'zma' ), 'gf_id' => 'HOM05D000959', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000959' ), 'data_identifier' => 'HOM05D000959', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000959', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '622', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p07100' => 'bna', 'A03p11720' => 'bna', 'A05p08300' => 'bna', 'A05p13380' => 'bna', 'A09p54130' => 'bna', 'A10p16690' => 'bna', 'A10p16700' => 'bna', 'A10p33390' => 'bna', 'Aa31LG10G16020' => 'aar', 'Aa31LG1G11810' => 'aar', 'Aa31LG1G11830' => 'aar', 'Aa31LG1G22510' => 'aar', 'Aa31LG5G4890' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5793' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2310' => 'aag', 'Actinidia08499' => 'ach', 'Actinidia11262' => 'ach', 'Actinidia23926' => 'ach', 'Actinidia34420' => 'ach', 'Actinidia36970' => 'ach', 'Ah.02g111220' => 'amhyb', 'Ah.15g097750' => 'amhyb', 'AL4G27500' => 'aly', 'AL6G11470' => 'aly', 'AL8G35950' => 'aly', 'AL8G35960' => 'aly', 'AL8G35970' => 'aly', 'Aqoxy1G00912' => 'aox', 'Aqoxy2G02253' => 'aox', 'Aqoxy2G02411' => 'aox', 'Aqoxy5G00485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BZ66YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K8ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM4FUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6BF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HFV7XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25JBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0YNNV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MAKK6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P70IT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP2Z6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V61LZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YWP64R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3S9AI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7PGHH' => 'arhy', 'AT2G32150' => 'ath', 'AT3G62040' => 'ath', 'AT5G02230' => 'ath', 'AT5G59480' => 'ath', 'AT5G59490' => 'ath', 'ATR0332G060' => 'atr', 'ATR0559G190' => 'atr', 'ATR0693G294' => 'atr', 'Atru.chr3.3975' => 'acertr', 'Atru.chr3.3976' => 'acertr', 'Atru.chr3.3977' => 'acertr', 'Atru.chr4.2498' => 'acertr', 'Atru.chr5.838' => 'acertr', 'Atru.chr8.1990' => 'acertr', 'Atru.chr8.1991' => 'acertr', 'Atru.chr8.1992' => 'acertr', 'AUR62001759' => 'cqu', 'AUR62009545' => 'cqu', 'AUR62010474' => 'cqu', 'AUR62025820' => 'cqu', 'AUR62030422' => 'cqu', 'AUR62033605' => 'cqu', 'AUR62038615' => 'cqu', 'AUR62041347' => 'cqu', 'BcaB01g04574' => 'bca', 'BcaB02g09263' => 'bca', 'BcaB02g10453' => 'bca', 'BcaB05g22513' => 'bca', 'BcaB08g36253' => 'bca', 'BcaB08g36254' => 'bca', 'BcaC01g06519' => 'bca', 'BcaC02g11889' => 'bca', 'BcaC03g14010' => 'bca', 'BcaC03g18439' => 'bca', 'BcaC04g19765' => 'bca', 'BcaC09g48432' => 'bca', 'BcaNung07302' => 'bca', 'BolC2t06040H' => 'bol', 'BolC2t07346H' => 'bol', 'BolC3t13817H' => 'bol', 'BolC4t22625H' => 'bol', 'BolC4t23297H' => 'bol', 'BolC8t51278H' => 'bol', 'BolC9t58050H' => 'bol', 'BolC9t58051H' => 'bol', 'BolC9t60163H' => 'bol', 'BraA02t04712Z' => 'bra', 'BraA02t05791Z' => 'bra', 'BraA03t10483Z' => 'bra', 'BraA05t19795Z' => 'bra', 'BraA05t20276Z' => 'bra', 'BraA09t40827Z' => 'bra', 'BraA10t43750Z' => 'bra', 'BraA10t43751Z' => 'bra', 'BraA10t45370Z' => 'bra', 'C02p00400' => 'bna', 'C02p12460' => 'bna', 'C03p13680' => 'bna', 'C04p10270' => 'bna', 'C04p17500' => 'bna', 'C08p37010' => 'bna', 'C09p51880' => 'bna', 'C09p51890' => 'bna', 'C09p74300' => 'bna', 'CAN.G179.26' => 'can', 'CAN.G3384.1' => 'can', 'CAN.G394.68' => 'can', 'CAN.G907.13' => 'can', 'CANSAT11G0012' => 'cansat', 'CANSAT25G1586' => 'cansat', 'CANSAT35G0735' => 'cansat', 'CANSAT54G0556' => 'cansat', 'CANSAT64G0356' => 'cansat', 'CANSAT78G2042' => 'cansat', 'CARHR125920' => 'chi', 'CARHR131910' => 'chi', 'CARHR172390' => 'chi', 'CARHR211140' => 'chi', 'CARHR285850' => 'chi', 'CARHR285860' => 'chi', 'Carub.0004s1347' => 'cru', 'Carub.0004s1960' => 'cru', 'Carub.0005s2880' => 'cru', 'Carub.0006s0107' => 'cru', 'Carub.0008s2015' => 'cru', 'Carub.0008s2016' => 'cru', 'Carub.0008s2017' => 'cru', 'Ca_01315_v3' => 'car', 'Ca_05063_v3' => 'car', 'Ca_10231_v3' => 'car', 'Ca_10913_v3' => 'car', 'Ca_19156_v3' => 'car', 'Ca_23644_v3' => 'car', 'Ca_26735_v3' => 'car', 'Cc01_g13130' => 'ccan', 'Cc02_g21690' => 'ccan', 'Cc03_g03600' => 'ccan', 'Cc06_g02510' => 'ccan', 'CDE02G1265' => 'cde', 'CDE05G0415' => 'cde', 'CDE08G1082' => 'cde', 'Cfa005780' => 'cfa', 'Cfa011522' => 'cfa', 'Cfa011523' => 'cfa', 'Cfa015627' => 'cfa', 'Cfa017359' => 'cfa', 'Ciclev10005687m.g' => 'ccl', 'Ciclev10012173m.g' => 'ccl', 'Ciclev10021621m.g' => 'ccl', 'Ciclev10028968m.g' => 'ccl', 'Ciclev10029907m.g' => 'ccl', 'CiPaw.01G164800' => 'cil', 'CiPaw.07G083700' => 'cil', 'CiPaw.07G127000' => 'cil', 'CiPaw.07G136900' => 'cil', 'CiPaw.08G081700' => 'cil', 'CiPaw.09G194600' => 'cil', 'CiPaw.10G146500' => 'cil', 'CiPaw.13G091500' => 'cil', 'CiPaw.13G091600' => 'cil', 'ClCG00G003390' => 'cla', 'ClCG01G007220' => 'cla', 'ClCG03G001370' => 'cla', 'ClCG04G008100' => 'cla', 'ClCG06G006110' => 'cla', 'ClCG06G006130' => 'cla', 'ClCG10G021210' => 'cla', 'COL.COLO4_07648' => 'col', 'COL.COLO4_07650' => 'col', 'COL.COLO4_07651' => 'col', 'COL.COLO4_14780' => 'col', 'COL.COLO4_18546' => 'col', 'COL.COLO4_18547' => 'col', 'COL.COLO4_23103' => 'col', 'COL.COLO4_30419' => 'col', 'COL.COLO4_34232' => 'col', 'Cpa.g.sc169.20' => 'cpa', 'Cpa.g.sc57.45' => 'cpa', 'Cpa.g.sc58.124' => 'cpa', 'Cpa.g.sc58.125' => 'cpa', 'Cpa.g.sc81.118' => 'cpa', 'Cpa.g.sc81.119' => 'cpa', 'Cre12.g524700' => 'cre', 'CsaV3_1G034430' => 'csa', 'CsaV3_1G034440' => 'csa', 'CsaV3_1G034450' => 'csa', 'CsaV3_3G034830' => 'csa', 'CsaV3_4G025090' => 'csa', 'CsaV3_5G018660' => 'csa', 'CsaV3_6G038160' => 'csa', 'CSS0003447' => 'camsi', 'CSS0017840' => 'camsi', 'CSS0019260' => 'camsi', 'CSS0040375' => 'camsi', 'CSS0042533' => 'camsi', 'DCAR_005960' => 'dca', 'DCAR_012104' => 'dca', 'DCAR_012105' => 'dca', 'DCAR_012293' => 'dca', 'DCAR_015632' => 'dca', 'DCAR_024602' => 'dca', 'DCAR_028752' => 'dca', 'Dinv06261' => 'din', 'Dinv13982' => 'din', 'Dinv17029' => 'din', 'Dinv18463' => 'din', 'Dinv33181' => 'din', 'Dinv35585' => 'din', 'Dinv37161' => 'din', 'Dinv42977' => 'din', 'Dinv43122' => 'din', 'Dinv44517' => 'din', 'Duzib093G0256' => 'dzi', 'Duzib106G1254' => 'dzi', 'Duzib128G1789' => 'dzi', 'Duzib133G0633' => 'dzi', 'Duzib138G0510' => 'dzi', 'Duzib150G1084' => 'dzi', 'Duzib168G0488' => 'dzi', 'Duzib168G1523' => 'dzi', 'Duzib170G0133' => 'dzi', 'ECA234G1433' => 'eca', 'ECA236G1432' => 'eca', 'ECA236G2256' => 'eca', 'ECA236G2365' => 'eca', 'ECA236G4830' => 'eca', 'ECA248G1505' => 'eca', 'EL10Ac3g06431' => 'bvu', 'EL10Ac5g12577' => 'bvu', 'EL10Ac6g13533' => 'bvu', 'EL10Ac7g16045' => 'bvu', 'Eucgr.A01281' => 'egr', 'Eucgr.B02326' => 'egr', 'Eucgr.H03532' => 'egr', 'Eucgr.K00553' => 'egr', 'Eucgr.K03116' => 'egr', 'FAN02G3963' => 'fan', 'FAN05G0438' => 'fan', 'FAN09G2434' => 'fan', 'FAN12G3984' => 'fan', 'FAN14G0798' => 'fan', 'FAN17G0652' => 'fan', 'FAN19G1988' => 'fan', 'FAN22G0632' => 'fan', 'FAN23G0387' => 'fan', 'FAN26G1323' => 'fan', 'FAN28G0666' => 'fan', 'FvH4_1g26080' => 'fve', 'FvH4_3g36780' => 'fve', 'FvH4_4g15270' => 'fve', 'FvH4_6g13490' => 'fve', 'Glyma.01G098700' => 'gma', 'Glyma.03G065900' => 'gma', 'Glyma.03G073754' => 'gma', 'Glyma.03G073758' => 'gma', 'Glyma.03G083200' => 'gma', 'Glyma.03G225500' => 'gma', 'Glyma.05G037766' => 'gma', 'Glyma.07G133500' => 'gma', 'Glyma.10G139400' => 'gma', 'Glyma.10G248900' => 'gma', 'Glyma.11G137800' => 'gma', 'Glyma.12G061300' => 'gma', 'Glyma.13G337900' => 'gma', 'Glyma.15G036600' => 'gma', 'Glyma.18G182800' => 'gma', 'Glyma.19G222500' => 'gma', 'Glyma.20G144800' => 'gma', 'Gohir.A01G222000' => 'ghi', 'Gohir.A03G044000' => 'ghi', 'Gohir.A03G044100' => 'ghi', 'Gohir.A04G083100' => 'ghi', 'Gohir.A07G127200' => 'ghi', 'Gohir.A07G132400' => 'ghi', 'Gohir.A08G000700' => 'ghi', 'Gohir.A11G327300' => 'ghi', 'Gohir.D01G211500' => 'ghi', 'Gohir.D03G123400' => 'ghi', 'Gohir.D03G123500' => 'ghi', 'Gohir.D04G121800' => 'ghi', 'Gohir.D07G131500' => 'ghi', 'Gohir.D07G136600' => 'ghi', 'Gohir.D08G011600' => 'ghi', 'Gohir.D11G346200' => 'ghi', 'Gorai.001G142800' => 'gra', 'Gorai.001G148700' => 'gra', 'Gorai.002G257300' => 'gra', 'Gorai.003G130000' => 'gra', 'Gorai.003G130100' => 'gra', 'Gorai.004G005300' => 'gra', 'Gorai.007G376500' => 'gra', 'Gorai.012G104700' => 'gra', 'GSVIVG01017946001' => 'vvi', 'GSVIVG01024928001' => 'vvi', 'GSVIVG01028227001' => 'vvi', 'GSVIVG01034151001' => 'vvi', 'HanXRQChr05g0135031' => 'han', 'HanXRQChr05g0135041' => 'han', 'HanXRQChr05g0140021' => 'han', 'HanXRQChr06g0178981' => 'han', 'HanXRQChr07g0188251' => 'han', 'HanXRQChr08g0235311' => 'han', 'HanXRQChr09g0271011' => 'han', 'HanXRQChr10g0293321' => 'han', 'HanXRQChr13g0388171' => 'han', 'Haze_00916' => 'cav', 'Haze_05063' => 'cav', 'Haze_20814' => 'cav', 'Haze_24128' => 'cav', 'Hma1.2p1_0745F.1_g212010' => 'hma', 'Hma1.2p1_0757F.1_g213260' => 'hma', 'Hma1.2p1_0936F.1_g238840' => 'hma', 'Hma1.2p1_1735F.1_g299890' => 'hma', 'Hma1.2p1_1861F.1_g305685' => 'hma', 'HPP92_003397' => 'vpl', 'HPP92_012597' => 'vpl', 'HPP92_015520' => 'vpl', 'HPP92_015539' => 'vpl', 'HPP92_020373' => 'vpl', 'Hund04938' => 'sun', 'Hund10677' => 'sun', 'Hund11033' => 'sun', 'Hund12155' => 'sun', 'Lalb_Chr01g0022551' => 'lal', 'Lalb_Chr03g0042341' => 'lal', 'Lalb_Chr07g0192931' => 'lal', 'Lalb_Chr12g0209551' => 'lal', 'Lalb_Chr19g0125251' => 'lal', 'Lalb_Chr19g0137891' => 'lal', 'Lalb_Chr21g0304641' => 'lal', 'Lalb_Chr21g0309881' => 'lal', 'Lj1A5T12' => 'lonja', 'Lj1C148G10' => 'lonja', 'Lj2A93T83' => 'lonja', 'Lj3A738G68' => 'lonja', 'Lj3C966T1' => 'lonja', 'Lj3g0018958' => 'lja', 'Lj3g0021831' => 'lja', 'Lj3g0025443' => 'lja', 'Lj4g0026809' => 'lja', 'Lj5g0012558' => 'lja', 'Lj5g0021586' => 'lja', 'Lsat_1_v5_gn_5_156840' => 'lsa', 'Lsat_1_v5_gn_8_73460' => 'lsa', 'Lsat_1_v5_gn_8_73481' => 'lsa', 'Lsat_1_v5_gn_9_31601' => 'lsa', 'Lsat_1_v5_gn_9_77320' => 'lsa', 'Manes.01G171300' => 'mes', 'Manes.01G171400' => 'mes', 'Manes.01G236100' => 'mes', 'Manes.02G130500' => 'mes', 'Manes.02G130600' => 'mes', 'Manes.03G180200' => 'mes', 'Manes.05G007000' => 'mes', 'Manes.08G084400' => 'mes', 'Manes.09G092600' => 'mes', 'Manes.15G027900' => 'mes', 'MBI04_g40948_MAGBIO' => 'mbi', 'MBI14_g12123_MAGBIO' => 'mbi', 'MBI18_g28915_MAGBIO' => 'mbi', 'MCO09G053' => 'mco', 'MCO11G782' => 'mco', 'MCO15G215' => 'mco', 'MD03G1088500' => 'mdo', 'MD03G1088600' => 'mdo', 'MD04G1130800' => 'mdo', 'MD09G1291700' => 'mdo', 'MD11G1097500' => 'mdo', 'MD11G1097600' => 'mdo', 'MD12G1143900' => 'mdo', 'MD13G1191400' => 'mdo', 'MD16G1191500' => 'mdo', 'Medtr1g085570' => 'mtr', 'Medtr1g104610' => 'mtr', 'Medtr2g097520' => 'mtr', 'Medtr4g021800' => 'mtr', 'Medtr4g021825' => 'mtr', 'Medtr4g064270' => 'mtr', 'Medtr4g064380' => 'mtr', 'Medtr7g062150' => 'mtr', 'MELO3C003138.2' => 'cme', 'MELO3C005187.2' => 'cme', 'MELO3C009252.2' => 'cme', 'MELO3C014481.2' => 'cme', 'MELO3C020616.2' => 'cme', 'MELO3C020617.2' => 'cme', 'MELO3C020618.2' => 'cme', 'Migut.G00328' => 'egut', 'Migut.J00320' => 'egut', 'Migut.L01000' => 'egut', 'Migut.L01953' => 'egut', 'MSTRG.10253' => 'ama', 'MSTRG.19077' => 'ama', 'MSTRG.26780' => 'ama', 'MSTRG.4023' => 'ama', 'MSTRG.5655' => 'ama', 'MSTRG.9992' => 'ama', 'Nitab4.5_0000043g0310' => 'nta', 'Nitab4.5_0000463g0080' => 'nta', 'Nitab4.5_0000705g0170' => 'nta', 'Nitab4.5_0001326g0060' => 'nta', 'Nitab4.5_0001628g0030' => 'nta', 'Nitab4.5_0002103g0110' => 'nta', 'Nitab4.5_0002946g0030' => 'nta', 'Nitab4.5_0004639g0030' => 'nta', 'Nn2g11149' => 'nnu', 'Nn2g13389' => 'nnu', 'Nn4g25326' => 'nnu', 'Nn4g26290' => 'nnu', 'Nn5g29865' => 'nnu', 'Oeu004163.1' => 'oeu', 'Oeu006901.1' => 'oeu', 'Oeu010096.1' => 'oeu', 'Oeu024340.1' => 'oeu', 'Oeu048369.1' => 'oeu', 'Os01g0973000' => 'osa', 'Os03g0273800' => 'osa', 'Os03g0701200' => 'osa', 'Os03g0834050' => 'osa', 'Os07g0634400' => 'osa', 'Peaxi162Scf00092g01414' => 'pax', 'Peaxi162Scf00165g00818' => 'pax', 'Peaxi162Scf00309g00516' => 'pax', 'Peaxi162Scf00774g00218' => 'pax', 'PGR004G1824' => 'pgr', 'PGR004G2606' => 'pgr', 'PGR031G2716' => 'pgr', 'PGR102G2460' => 'pgr', 'PGR142G2599' => 'pgr', 'PGSC0003DMG400000843' => 'stu', 'PGSC0003DMG400008829' => 'stu', 'PGSC0003DMG400030418' => 'stu', 'PGSC0003DMG400031834' => 'stu', 'PGSC0003DMG401028300' => 'stu', 'PGSC0003DMG402028300' => 'stu', 'Phvul.001G219300' => 'pvu', 'Phvul.007G056000' => 'pvu', 'Phvul.007G208000' => 'pvu', 'Phvul.008G119500' => 'pvu', 'Phvul.010G011200' => 'pvu', 'Phvul.010G014800' => 'pvu', 'Phvul.011G062900' => 'pvu', 'Phvul.L007043' => 'pvu', 'Potri.001G242300' => 'ptr', 'Potri.002G185300' => 'ptr', 'Potri.006G086900' => 'ptr', 'Potri.008G151700' => 'ptr', 'Potri.009G033500' => 'ptr', 'Potri.010G089300' => 'ptr', 'Potri.014G110800' => 'ptr', 'Pp3c27_8130' => 'ppa', 'Pp3c6_27410' => 'ppa', 'PRCOL_00001659' => 'pco', 'PRCOL_00001927' => 'pco', 'PRCOL_00003649' => 'pco', 'Prupe.1G011600' => 'ppe', 'Prupe.3G000800' => 'ppe', 'Prupe.3G001100' => 'ppe', 'Prupe.6G072700' => 'ppe', 'Prupe.6G072800' => 'ppe', 'Prupe.6G257300' => 'ppe', 'Prupe.8G033000' => 'ppe', 'Psat0s2633g0080' => 'psa', 'Psat0s3396g0080' => 'psa', 'Psat0s3396g0200' => 'psa', 'Psat3g139080' => 'psa', 'Psat5g285080' => 'psa', 'Psat6g157760' => 'psa', 'Psat6g208440' => 'psa', 'Psat7g215320' => 'psa', 'Psat7g215400' => 'psa', 'Psat7g235600' => 'psa', 'Psat7g235760' => 'psa', 'PSO063G4603' => 'pso', 'PSO210G0182' => 'pso', 'PSO210G0196' => 'pso', 'PSO339G0394' => 'pso', 'PSO339G4127' => 'pso', 'PSO513G0064' => 'pso', 'PSO761G0079' => 'pso', 'QL01p031003' => 'qlo', 'QL01p031078' => 'qlo', 'QL06p003004' => 'qlo', 'QL07p048731' => 'qlo', 'QL09p037427' => 'qlo', 'RcHm_v2.0_Chr3g0466361' => 'rch', 'RcHm_v2.0_Chr3g0485571' => 'rch', 'RcHm_v2.0_Chr4g0416551' => 'rch', 'RcHm_v2.0_Chr5g0065831' => 'rch', 'Rhsim01G0230500' => 'rsi', 'Rhsim05G0194000' => 'rsi', 'Rhsim08G0250400' => 'rsi', 'Sabra02G0131000' => 'sbr', 'Sabra06G0066300' => 'sbr', 'Sabra08G0115500' => 'sbr', 'Sabra09G0023900' => 'sbr', 'Sabra10G0054000' => 'sbr', 'Sabra14G0081500' => 'sbr', 'Sabra16G0147100' => 'sbr', 'SalBow2G2957' => 'sbo', 'SalBow4G3320' => 'sbo', 'SalBow8G1894' => 'sbo', 'Sc07g0007950' => 'sci', 'Sc12g0001360' => 'sci', 'Sc13g0004330' => 'sci', 'Sc20g0005010' => 'sci', 'Sed0000361' => 'sed', 'Sed0001706' => 'sed', 'Sed0002422' => 'sed', 'Sed0004029' => 'sed', 'Sed0004602' => 'sed', 'Sed0004943' => 'sed', 'Sed0008646' => 'sed', 'Sed0023313' => 'sed', 'Sed0024843' => 'sed', 'SEGI_00081' => 'sgi', 'SEGI_00947' => 'sgi', 'SEGI_04046' => 'sgi', 'SEGI_06880' => 'sgi', 'SEGI_09736' => 'sgi', 'SEGI_12741' => 'sgi', 'SEGI_14530' => 'sgi', 'SEGI_20705' => 'sgi', 'SEGI_26088' => 'sgi', 'SEGI_28323' => 'sgi', 'SEGI_33343' => 'sgi', 'SGA_v2.0_scaffold126G33775' => 'sas', 'SGA_v2.0_scaffold2G01337' => 'sas', 'SGA_v2.0_scaffold38G15006' => 'sas', 'SGA_v2.0_scaffold39G15264' => 'sas', 'SGA_v2.0_scaffold453G51880' => 'sas', 'SHI12696' => 'shi', 'SMO367G1096' => 'smo', 'Solyc01g068630.3' => 'sly', 'Solyc05g011880.3' => 'sly', 'Solyc06g076300.3' => 'sly', 'Solyc09g010940.4' => 'sly', 'Solyc09g075890.3' => 'sly', 'Sopen01g030560' => 'spe', 'Sopen05g006630' => 'spe', 'Sopen06g032720' => 'spe', 'Sopen09g005660' => 'spe', 'Sopen09g030690' => 'spe', 'Sp4g14540' => 'spa', 'Sp4g20030' => 'spa', 'Sp5g01320' => 'spa', 'Sp6g21170' => 'spa', 'Sp6g21180' => 'spa', 'Sp6g21190' => 'spa', 'Sp6g40220' => 'spa', 'TAR362G0122' => 'tar', 'TAR362G1338' => 'tar', 'TAR369G0590' => 'tar', 'TAR371G0824' => 'tar', 'TAR622G1429' => 'tar', 'TAR623G0734' => 'tar', 'TAR625G0441' => 'tar', 'TAR629G0976' => 'tar', 'TAR633G1195' => 'tar', 'TAR636G2660' => 'tar', 'THA.LOC104799440' => 'tha', 'THA.LOC104800966' => 'tha', 'THA.LOC104806559' => 'tha', 'THA.LOC104810765' => 'tha', 'THA.LOC104816266' => 'tha', 'THA.LOC104817419' => 'tha', 'THA.LOC104827021' => 'tha', 'Thecc.01G327400' => 'tca', 'Thecc.04G229200' => 'tca', 'Thecc.05G037400' => 'tca', 'Thecc.09G318600' => 'tca', 'Thecc.09G318700' => 'tca', 'Thhalv10006238m.g' => 'esa', 'Thhalv10014321m.g' => 'esa', 'Thhalv10014335m.g' => 'esa', 'Thhalv10015826m.g' => 'esa', 'Thhalv10017107m.g' => 'esa', 'Thhalv10017180m.g' => 'esa', 'Thhalv10029339m.g' => 'esa', 'TPR.G1699' => 'tpr', 'TPR.G23609' => 'tpr', 'TPR.G3081' => 'tpr', 'TPR.G40397' => 'tpr', 'TPR.G5522' => 'tpr', 'TPR.G5618' => 'tpr', 'TPR.G5626' => 'tpr', 'TWI09G1632' => 'twi', 'TWI23G1230' => 'twi', 'TWI53G1064' => 'twi', 'TWI59G0751' => 'twi', 'TWI74G0947' => 'twi', 'TWI77G0337' => 'twi', 'TWI79G1254' => 'twi', 'unitig_0.g2341' => 'ugi', 'unitig_26.g10006' => 'ugi', 'unitig_26.g10008' => 'ugi', 'unitig_26.g9192' => 'ugi', 'vmacro14547' => 'vma', 'vmacro15333' => 'vma', 'vmacro18743' => 'vma', 'vmacro20166' => 'vma', 'VMungo0331G0523' => 'vmu', 'VMungo0331G1202' => 'vmu', 'VMungo0720G1228' => 'vmu', 'VMungo0720G1514' => 'vmu', 'VMungo1080G0169' => 'vmu', 'VMungo1127G1475' => 'vmu', 'VMungo1383G1208' => 'vmu', 'VMungo1383G1698' => 'vmu', 'Zm00001eb012270' => 'zma', 'Zm00001eb054100' => 'zma', 'Zm00001eb063350' => 'zma', 'Zm00001eb328560' => 'zma', 'Zm00001eb342820' => 'zma', 'Zm00001eb362210' => 'zma', 'Zm00001eb397730' => 'zma', 'Zm00001eb399750' => 'zma' ) $gf_id = 'HOM05D000959' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000959' ) $data_identifier = 'HOM05D000959' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 5, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 5, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 10, 'mbi' => (int) 3, 'mco' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 2, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 3, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 11, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399750' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000959', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '622', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p07100' => 'bna', 'A03p11720' => 'bna', 'A05p08300' => 'bna', 'A05p13380' => 'bna', 'A09p54130' => 'bna', 'A10p16690' => 'bna', 'A10p16700' => 'bna', 'A10p33390' => 'bna', 'Aa31LG10G16020' => 'aar', 'Aa31LG1G11810' => 'aar', 'Aa31LG1G11830' => 'aar', 'Aa31LG1G22510' => 'aar', 'Aa31LG5G4890' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5793' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2310' => 'aag', 'Actinidia08499' => 'ach', 'Actinidia11262' => 'ach', 'Actinidia23926' => 'ach', 'Actinidia34420' => 'ach', 'Actinidia36970' => 'ach', 'Ah.02g111220' => 'amhyb', 'Ah.15g097750' => 'amhyb', 'AL4G27500' => 'aly', 'AL6G11470' => 'aly', 'AL8G35950' => 'aly', 'AL8G35960' => 'aly', 'AL8G35970' => 'aly', 'Aqoxy1G00912' => 'aox', 'Aqoxy2G02253' => 'aox', 'Aqoxy2G02411' => 'aox', 'Aqoxy5G00485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BZ66YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K8ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM4FUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6BF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HFV7XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25JBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0YNNV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MAKK6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P70IT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP2Z6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V61LZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YWP64R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3S9AI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7PGHH' => 'arhy', 'AT2G32150' => 'ath', 'AT3G62040' => 'ath', 'AT5G02230' => 'ath', 'AT5G59480' => 'ath', 'AT5G59490' => 'ath', 'ATR0332G060' => 'atr', 'ATR0559G190' => 'atr', 'ATR0693G294' => 'atr', 'Atru.chr3.3975' => 'acertr', 'Atru.chr3.3976' => 'acertr', 'Atru.chr3.3977' => 'acertr', 'Atru.chr4.2498' => 'acertr', 'Atru.chr5.838' => 'acertr', 'Atru.chr8.1990' => 'acertr', 'Atru.chr8.1991' => 'acertr', 'Atru.chr8.1992' => 'acertr', 'AUR62001759' => 'cqu', 'AUR62009545' => 'cqu', 'AUR62010474' => 'cqu', 'AUR62025820' => 'cqu', 'AUR62030422' => 'cqu', 'AUR62033605' => 'cqu', 'AUR62038615' => 'cqu', 'AUR62041347' => 'cqu', 'BcaB01g04574' => 'bca', 'BcaB02g09263' => 'bca', 'BcaB02g10453' => 'bca', 'BcaB05g22513' => 'bca', 'BcaB08g36253' => 'bca', 'BcaB08g36254' => 'bca', 'BcaC01g06519' => 'bca', 'BcaC02g11889' => 'bca', 'BcaC03g14010' => 'bca', 'BcaC03g18439' => 'bca', 'BcaC04g19765' => 'bca', 'BcaC09g48432' => 'bca', 'BcaNung07302' => 'bca', 'BolC2t06040H' => 'bol', 'BolC2t07346H' => 'bol', 'BolC3t13817H' => 'bol', 'BolC4t22625H' => 'bol', 'BolC4t23297H' => 'bol', 'BolC8t51278H' => 'bol', 'BolC9t58050H' => 'bol', 'BolC9t58051H' => 'bol', 'BolC9t60163H' => 'bol', 'BraA02t04712Z' => 'bra', 'BraA02t05791Z' => 'bra', 'BraA03t10483Z' => 'bra', 'BraA05t19795Z' => 'bra', 'BraA05t20276Z' => 'bra', 'BraA09t40827Z' => 'bra', 'BraA10t43750Z' => 'bra', 'BraA10t43751Z' => 'bra', 'BraA10t45370Z' => 'bra', 'C02p00400' => 'bna', 'C02p12460' => 'bna', 'C03p13680' => 'bna', 'C04p10270' => 'bna', 'C04p17500' => 'bna', 'C08p37010' => 'bna', 'C09p51880' => 'bna', 'C09p51890' => 'bna', 'C09p74300' => 'bna', 'CAN.G179.26' => 'can', 'CAN.G3384.1' => 'can', 'CAN.G394.68' => 'can', 'CAN.G907.13' => 'can', 'CANSAT11G0012' => 'cansat', 'CANSAT25G1586' => 'cansat', 'CANSAT35G0735' => 'cansat', 'CANSAT54G0556' => 'cansat', 'CANSAT64G0356' => 'cansat', 'CANSAT78G2042' => 'cansat', 'CARHR125920' => 'chi', 'CARHR131910' => 'chi', 'CARHR172390' => 'chi', 'CARHR211140' => 'chi', 'CARHR285850' => 'chi', 'CARHR285860' => 'chi', 'Carub.0004s1347' => 'cru', 'Carub.0004s1960' => 'cru', 'Carub.0005s2880' => 'cru', 'Carub.0006s0107' => 'cru', 'Carub.0008s2015' => 'cru', 'Carub.0008s2016' => 'cru', 'Carub.0008s2017' => 'cru', 'Ca_01315_v3' => 'car', 'Ca_05063_v3' => 'car', 'Ca_10231_v3' => 'car', 'Ca_10913_v3' => 'car', 'Ca_19156_v3' => 'car', 'Ca_23644_v3' => 'car', 'Ca_26735_v3' => 'car', 'Cc01_g13130' => 'ccan', 'Cc02_g21690' => 'ccan', 'Cc03_g03600' => 'ccan', 'Cc06_g02510' => 'ccan', 'CDE02G1265' => 'cde', 'CDE05G0415' => 'cde', 'CDE08G1082' => 'cde', 'Cfa005780' => 'cfa', 'Cfa011522' => 'cfa', 'Cfa011523' => 'cfa', 'Cfa015627' => 'cfa', 'Cfa017359' => 'cfa', 'Ciclev10005687m.g' => 'ccl', 'Ciclev10012173m.g' => 'ccl', 'Ciclev10021621m.g' => 'ccl', 'Ciclev10028968m.g' => 'ccl', 'Ciclev10029907m.g' => 'ccl', 'CiPaw.01G164800' => 'cil', 'CiPaw.07G083700' => 'cil', 'CiPaw.07G127000' => 'cil', 'CiPaw.07G136900' => 'cil', 'CiPaw.08G081700' => 'cil', 'CiPaw.09G194600' => 'cil', 'CiPaw.10G146500' => 'cil', 'CiPaw.13G091500' => 'cil', 'CiPaw.13G091600' => 'cil', 'ClCG00G003390' => 'cla', 'ClCG01G007220' => 'cla', 'ClCG03G001370' => 'cla', 'ClCG04G008100' => 'cla', 'ClCG06G006110' => 'cla', 'ClCG06G006130' => 'cla', 'ClCG10G021210' => 'cla', 'COL.COLO4_07648' => 'col', 'COL.COLO4_07650' => 'col', 'COL.COLO4_07651' => 'col', 'COL.COLO4_14780' => 'col', 'COL.COLO4_18546' => 'col', 'COL.COLO4_18547' => 'col', 'COL.COLO4_23103' => 'col', 'COL.COLO4_30419' => 'col', 'COL.COLO4_34232' => 'col', 'Cpa.g.sc169.20' => 'cpa', 'Cpa.g.sc57.45' => 'cpa', 'Cpa.g.sc58.124' => 'cpa', 'Cpa.g.sc58.125' => 'cpa', 'Cpa.g.sc81.118' => 'cpa', 'Cpa.g.sc81.119' => 'cpa', 'Cre12.g524700' => 'cre', 'CsaV3_1G034430' => 'csa', 'CsaV3_1G034440' => 'csa', 'CsaV3_1G034450' => 'csa', 'CsaV3_3G034830' => 'csa', 'CsaV3_4G025090' => 'csa', 'CsaV3_5G018660' => 'csa', 'CsaV3_6G038160' => 'csa', 'CSS0003447' => 'camsi', 'CSS0017840' => 'camsi', 'CSS0019260' => 'camsi', 'CSS0040375' => 'camsi', 'CSS0042533' => 'camsi', 'DCAR_005960' => 'dca', 'DCAR_012104' => 'dca', 'DCAR_012105' => 'dca', 'DCAR_012293' => 'dca', 'DCAR_015632' => 'dca', 'DCAR_024602' => 'dca', 'DCAR_028752' => 'dca', 'Dinv06261' => 'din', 'Dinv13982' => 'din', 'Dinv17029' => 'din', 'Dinv18463' => 'din', 'Dinv33181' => 'din', 'Dinv35585' => 'din', 'Dinv37161' => 'din', 'Dinv42977' => 'din', 'Dinv43122' => 'din', 'Dinv44517' => 'din', 'Duzib093G0256' => 'dzi', 'Duzib106G1254' => 'dzi', 'Duzib128G1789' => 'dzi', 'Duzib133G0633' => 'dzi', 'Duzib138G0510' => 'dzi', 'Duzib150G1084' => 'dzi', 'Duzib168G0488' => 'dzi', 'Duzib168G1523' => 'dzi', 'Duzib170G0133' => 'dzi', 'ECA234G1433' => 'eca', 'ECA236G1432' => 'eca', 'ECA236G2256' => 'eca', 'ECA236G2365' => 'eca', 'ECA236G4830' => 'eca', 'ECA248G1505' => 'eca', 'EL10Ac3g06431' => 'bvu', 'EL10Ac5g12577' => 'bvu', 'EL10Ac6g13533' => 'bvu', 'EL10Ac7g16045' => 'bvu', 'Eucgr.A01281' => 'egr', 'Eucgr.B02326' => 'egr', 'Eucgr.H03532' => 'egr', 'Eucgr.K00553' => 'egr', 'Eucgr.K03116' => 'egr', 'FAN02G3963' => 'fan', 'FAN05G0438' => 'fan', 'FAN09G2434' => 'fan', 'FAN12G3984' => 'fan', 'FAN14G0798' => 'fan', 'FAN17G0652' => 'fan', 'FAN19G1988' => 'fan', 'FAN22G0632' => 'fan', 'FAN23G0387' => 'fan', 'FAN26G1323' => 'fan', 'FAN28G0666' => 'fan', 'FvH4_1g26080' => 'fve', 'FvH4_3g36780' => 'fve', 'FvH4_4g15270' => 'fve', 'FvH4_6g13490' => 'fve', 'Glyma.01G098700' => 'gma', 'Glyma.03G065900' => 'gma', 'Glyma.03G073754' => 'gma', 'Glyma.03G073758' => 'gma', 'Glyma.03G083200' => 'gma', 'Glyma.03G225500' => 'gma', 'Glyma.05G037766' => 'gma', 'Glyma.07G133500' => 'gma', 'Glyma.10G139400' => 'gma', 'Glyma.10G248900' => 'gma', 'Glyma.11G137800' => 'gma', 'Glyma.12G061300' => 'gma', 'Glyma.13G337900' => 'gma', 'Glyma.15G036600' => 'gma', 'Glyma.18G182800' => 'gma', 'Glyma.19G222500' => 'gma', 'Glyma.20G144800' => 'gma', 'Gohir.A01G222000' => 'ghi', 'Gohir.A03G044000' => 'ghi', 'Gohir.A03G044100' => 'ghi', 'Gohir.A04G083100' => 'ghi', 'Gohir.A07G127200' => 'ghi', 'Gohir.A07G132400' => 'ghi', 'Gohir.A08G000700' => 'ghi', 'Gohir.A11G327300' => 'ghi', 'Gohir.D01G211500' => 'ghi', 'Gohir.D03G123400' => 'ghi', 'Gohir.D03G123500' => 'ghi', 'Gohir.D04G121800' => 'ghi', 'Gohir.D07G131500' => 'ghi', 'Gohir.D07G136600' => 'ghi', 'Gohir.D08G011600' => 'ghi', 'Gohir.D11G346200' => 'ghi', 'Gorai.001G142800' => 'gra', 'Gorai.001G148700' => 'gra', 'Gorai.002G257300' => 'gra', 'Gorai.003G130000' => 'gra', 'Gorai.003G130100' => 'gra', 'Gorai.004G005300' => 'gra', 'Gorai.007G376500' => 'gra', 'Gorai.012G104700' => 'gra', 'GSVIVG01017946001' => 'vvi', 'GSVIVG01024928001' => 'vvi', 'GSVIVG01028227001' => 'vvi', 'GSVIVG01034151001' => 'vvi', 'HanXRQChr05g0135031' => 'han', 'HanXRQChr05g0135041' => 'han', 'HanXRQChr05g0140021' => 'han', 'HanXRQChr06g0178981' => 'han', 'HanXRQChr07g0188251' => 'han', 'HanXRQChr08g0235311' => 'han', 'HanXRQChr09g0271011' => 'han', 'HanXRQChr10g0293321' => 'han', 'HanXRQChr13g0388171' => 'han', 'Haze_00916' => 'cav', 'Haze_05063' => 'cav', 'Haze_20814' => 'cav', 'Haze_24128' => 'cav', 'Hma1.2p1_0745F.1_g212010' => 'hma', 'Hma1.2p1_0757F.1_g213260' => 'hma', 'Hma1.2p1_0936F.1_g238840' => 'hma', 'Hma1.2p1_1735F.1_g299890' => 'hma', 'Hma1.2p1_1861F.1_g305685' => 'hma', 'HPP92_003397' => 'vpl', 'HPP92_012597' => 'vpl', 'HPP92_015520' => 'vpl', 'HPP92_015539' => 'vpl', 'HPP92_020373' => 'vpl', 'Hund04938' => 'sun', 'Hund10677' => 'sun', 'Hund11033' => 'sun', 'Hund12155' => 'sun', 'Lalb_Chr01g0022551' => 'lal', 'Lalb_Chr03g0042341' => 'lal', 'Lalb_Chr07g0192931' => 'lal', 'Lalb_Chr12g0209551' => 'lal', 'Lalb_Chr19g0125251' => 'lal', 'Lalb_Chr19g0137891' => 'lal', 'Lalb_Chr21g0304641' => 'lal', 'Lalb_Chr21g0309881' => 'lal', 'Lj1A5T12' => 'lonja', 'Lj1C148G10' => 'lonja', 'Lj2A93T83' => 'lonja', 'Lj3A738G68' => 'lonja', 'Lj3C966T1' => 'lonja', 'Lj3g0018958' => 'lja', 'Lj3g0021831' => 'lja', 'Lj3g0025443' => 'lja', 'Lj4g0026809' => 'lja', 'Lj5g0012558' => 'lja', 'Lj5g0021586' => 'lja', 'Lsat_1_v5_gn_5_156840' => 'lsa', 'Lsat_1_v5_gn_8_73460' => 'lsa', 'Lsat_1_v5_gn_8_73481' => 'lsa', 'Lsat_1_v5_gn_9_31601' => 'lsa', 'Lsat_1_v5_gn_9_77320' => 'lsa', 'Manes.01G171300' => 'mes', 'Manes.01G171400' => 'mes', 'Manes.01G236100' => 'mes', 'Manes.02G130500' => 'mes', 'Manes.02G130600' => 'mes', 'Manes.03G180200' => 'mes', 'Manes.05G007000' => 'mes', 'Manes.08G084400' => 'mes', 'Manes.09G092600' => 'mes', 'Manes.15G027900' => 'mes', 'MBI04_g40948_MAGBIO' => 'mbi', 'MBI14_g12123_MAGBIO' => 'mbi', 'MBI18_g28915_MAGBIO' => 'mbi', 'MCO09G053' => 'mco', 'MCO11G782' => 'mco', 'MCO15G215' => 'mco', 'MD03G1088500' => 'mdo', 'MD03G1088600' => 'mdo', 'MD04G1130800' => 'mdo', 'MD09G1291700' => 'mdo', 'MD11G1097500' => 'mdo', 'MD11G1097600' => 'mdo', 'MD12G1143900' => 'mdo', 'MD13G1191400' => 'mdo', 'MD16G1191500' => 'mdo', 'Medtr1g085570' => 'mtr', 'Medtr1g104610' => 'mtr', 'Medtr2g097520' => 'mtr', 'Medtr4g021800' => 'mtr', 'Medtr4g021825' => 'mtr', 'Medtr4g064270' => 'mtr', 'Medtr4g064380' => 'mtr', 'Medtr7g062150' => 'mtr', 'MELO3C003138.2' => 'cme', 'MELO3C005187.2' => 'cme', 'MELO3C009252.2' => 'cme', 'MELO3C014481.2' => 'cme', 'MELO3C020616.2' => 'cme', 'MELO3C020617.2' => 'cme', 'MELO3C020618.2' => 'cme', 'Migut.G00328' => 'egut', 'Migut.J00320' => 'egut', 'Migut.L01000' => 'egut', 'Migut.L01953' => 'egut', 'MSTRG.10253' => 'ama', 'MSTRG.19077' => 'ama', 'MSTRG.26780' => 'ama', 'MSTRG.4023' => 'ama', 'MSTRG.5655' => 'ama', 'MSTRG.9992' => 'ama', 'Nitab4.5_0000043g0310' => 'nta', 'Nitab4.5_0000463g0080' => 'nta', 'Nitab4.5_0000705g0170' => 'nta', 'Nitab4.5_0001326g0060' => 'nta', 'Nitab4.5_0001628g0030' => 'nta', 'Nitab4.5_0002103g0110' => 'nta', 'Nitab4.5_0002946g0030' => 'nta', 'Nitab4.5_0004639g0030' => 'nta', 'Nn2g11149' => 'nnu', 'Nn2g13389' => 'nnu', 'Nn4g25326' => 'nnu', 'Nn4g26290' => 'nnu', 'Nn5g29865' => 'nnu', 'Oeu004163.1' => 'oeu', 'Oeu006901.1' => 'oeu', 'Oeu010096.1' => 'oeu', 'Oeu024340.1' => 'oeu', 'Oeu048369.1' => 'oeu', 'Os01g0973000' => 'osa', 'Os03g0273800' => 'osa', 'Os03g0701200' => 'osa', 'Os03g0834050' => 'osa', 'Os07g0634400' => 'osa', 'Peaxi162Scf00092g01414' => 'pax', 'Peaxi162Scf00165g00818' => 'pax', 'Peaxi162Scf00309g00516' => 'pax', 'Peaxi162Scf00774g00218' => 'pax', 'PGR004G1824' => 'pgr', 'PGR004G2606' => 'pgr', 'PGR031G2716' => 'pgr', 'PGR102G2460' => 'pgr', 'PGR142G2599' => 'pgr', 'PGSC0003DMG400000843' => 'stu', 'PGSC0003DMG400008829' => 'stu', 'PGSC0003DMG400030418' => 'stu', 'PGSC0003DMG400031834' => 'stu', 'PGSC0003DMG401028300' => 'stu', 'PGSC0003DMG402028300' => 'stu', 'Phvul.001G219300' => 'pvu', 'Phvul.007G056000' => 'pvu', 'Phvul.007G208000' => 'pvu', 'Phvul.008G119500' => 'pvu', 'Phvul.010G011200' => 'pvu', 'Phvul.010G014800' => 'pvu', 'Phvul.011G062900' => 'pvu', 'Phvul.L007043' => 'pvu', 'Potri.001G242300' => 'ptr', 'Potri.002G185300' => 'ptr', 'Potri.006G086900' => 'ptr', 'Potri.008G151700' => 'ptr', 'Potri.009G033500' => 'ptr', 'Potri.010G089300' => 'ptr', 'Potri.014G110800' => 'ptr', 'Pp3c27_8130' => 'ppa', 'Pp3c6_27410' => 'ppa', 'PRCOL_00001659' => 'pco', 'PRCOL_00001927' => 'pco', 'PRCOL_00003649' => 'pco', 'Prupe.1G011600' => 'ppe', 'Prupe.3G000800' => 'ppe', 'Prupe.3G001100' => 'ppe', 'Prupe.6G072700' => 'ppe', 'Prupe.6G072800' => 'ppe', 'Prupe.6G257300' => 'ppe', 'Prupe.8G033000' => 'ppe', 'Psat0s2633g0080' => 'psa', 'Psat0s3396g0080' => 'psa', 'Psat0s3396g0200' => 'psa', 'Psat3g139080' => 'psa', 'Psat5g285080' => 'psa', 'Psat6g157760' => 'psa', 'Psat6g208440' => 'psa', 'Psat7g215320' => 'psa', 'Psat7g215400' => 'psa', 'Psat7g235600' => 'psa', 'Psat7g235760' => 'psa', 'PSO063G4603' => 'pso', 'PSO210G0182' => 'pso', 'PSO210G0196' => 'pso', 'PSO339G0394' => 'pso', 'PSO339G4127' => 'pso', 'PSO513G0064' => 'pso', 'PSO761G0079' => 'pso', 'QL01p031003' => 'qlo', 'QL01p031078' => 'qlo', 'QL06p003004' => 'qlo', 'QL07p048731' => 'qlo', 'QL09p037427' => 'qlo', 'RcHm_v2.0_Chr3g0466361' => 'rch', 'RcHm_v2.0_Chr3g0485571' => 'rch', 'RcHm_v2.0_Chr4g0416551' => 'rch', 'RcHm_v2.0_Chr5g0065831' => 'rch', 'Rhsim01G0230500' => 'rsi', 'Rhsim05G0194000' => 'rsi', 'Rhsim08G0250400' => 'rsi', 'Sabra02G0131000' => 'sbr', 'Sabra06G0066300' => 'sbr', 'Sabra08G0115500' => 'sbr', 'Sabra09G0023900' => 'sbr', 'Sabra10G0054000' => 'sbr', 'Sabra14G0081500' => 'sbr', 'Sabra16G0147100' => 'sbr', 'SalBow2G2957' => 'sbo', 'SalBow4G3320' => 'sbo', 'SalBow8G1894' => 'sbo', 'Sc07g0007950' => 'sci', 'Sc12g0001360' => 'sci', 'Sc13g0004330' => 'sci', 'Sc20g0005010' => 'sci', 'Sed0000361' => 'sed', 'Sed0001706' => 'sed', 'Sed0002422' => 'sed', 'Sed0004029' => 'sed', 'Sed0004602' => 'sed', 'Sed0004943' => 'sed', 'Sed0008646' => 'sed', 'Sed0023313' => 'sed', 'Sed0024843' => 'sed', 'SEGI_00081' => 'sgi', 'SEGI_00947' => 'sgi', 'SEGI_04046' => 'sgi', 'SEGI_06880' => 'sgi', 'SEGI_09736' => 'sgi', 'SEGI_12741' => 'sgi', 'SEGI_14530' => 'sgi', 'SEGI_20705' => 'sgi', 'SEGI_26088' => 'sgi', 'SEGI_28323' => 'sgi', 'SEGI_33343' => 'sgi', 'SGA_v2.0_scaffold126G33775' => 'sas', 'SGA_v2.0_scaffold2G01337' => 'sas', 'SGA_v2.0_scaffold38G15006' => 'sas', 'SGA_v2.0_scaffold39G15264' => 'sas', 'SGA_v2.0_scaffold453G51880' => 'sas', 'SHI12696' => 'shi', 'SMO367G1096' => 'smo', 'Solyc01g068630.3' => 'sly', 'Solyc05g011880.3' => 'sly', 'Solyc06g076300.3' => 'sly', 'Solyc09g010940.4' => 'sly', 'Solyc09g075890.3' => 'sly', 'Sopen01g030560' => 'spe', 'Sopen05g006630' => 'spe', 'Sopen06g032720' => 'spe', 'Sopen09g005660' => 'spe', 'Sopen09g030690' => 'spe', 'Sp4g14540' => 'spa', 'Sp4g20030' => 'spa', 'Sp5g01320' => 'spa', 'Sp6g21170' => 'spa', 'Sp6g21180' => 'spa', 'Sp6g21190' => 'spa', 'Sp6g40220' => 'spa', 'TAR362G0122' => 'tar', 'TAR362G1338' => 'tar', 'TAR369G0590' => 'tar', 'TAR371G0824' => 'tar', 'TAR622G1429' => 'tar', 'TAR623G0734' => 'tar', 'TAR625G0441' => 'tar', 'TAR629G0976' => 'tar', 'TAR633G1195' => 'tar', 'TAR636G2660' => 'tar', 'THA.LOC104799440' => 'tha', 'THA.LOC104800966' => 'tha', 'THA.LOC104806559' => 'tha', 'THA.LOC104810765' => 'tha', 'THA.LOC104816266' => 'tha', 'THA.LOC104817419' => 'tha', 'THA.LOC104827021' => 'tha', 'Thecc.01G327400' => 'tca', 'Thecc.04G229200' => 'tca', 'Thecc.05G037400' => 'tca', 'Thecc.09G318600' => 'tca', 'Thecc.09G318700' => 'tca', 'Thhalv10006238m.g' => 'esa', 'Thhalv10014321m.g' => 'esa', 'Thhalv10014335m.g' => 'esa', 'Thhalv10015826m.g' => 'esa', 'Thhalv10017107m.g' => 'esa', 'Thhalv10017180m.g' => 'esa', 'Thhalv10029339m.g' => 'esa', 'TPR.G1699' => 'tpr', 'TPR.G23609' => 'tpr', 'TPR.G3081' => 'tpr', 'TPR.G40397' => 'tpr', 'TPR.G5522' => 'tpr', 'TPR.G5618' => 'tpr', 'TPR.G5626' => 'tpr', 'TWI09G1632' => 'twi', 'TWI23G1230' => 'twi', 'TWI53G1064' => 'twi', 'TWI59G0751' => 'twi', 'TWI74G0947' => 'twi', 'TWI77G0337' => 'twi', 'TWI79G1254' => 'twi', 'unitig_0.g2341' => 'ugi', 'unitig_26.g10006' => 'ugi', 'unitig_26.g10008' => 'ugi', 'unitig_26.g9192' => 'ugi', 'vmacro14547' => 'vma', 'vmacro15333' => 'vma', 'vmacro18743' => 'vma', 'vmacro20166' => 'vma', 'VMungo0331G0523' => 'vmu', 'VMungo0331G1202' => 'vmu', 'VMungo0720G1228' => 'vmu', 'VMungo0720G1514' => 'vmu', 'VMungo1080G0169' => 'vmu', 'VMungo1127G1475' => 'vmu', 'VMungo1383G1208' => 'vmu', 'VMungo1383G1698' => 'vmu', 'Zm00001eb012270' => 'zma', 'Zm00001eb054100' => 'zma', 'Zm00001eb063350' => 'zma', 'Zm00001eb328560' => 'zma', 'Zm00001eb342820' => 'zma', 'Zm00001eb362210' => 'zma', 'Zm00001eb397730' => 'zma', 'Zm00001eb399750' => 'zma' ), 'gf_id' => 'HOM05D000959', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000959' ), 'data_identifier' => 'HOM05D000959', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000959', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '622', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p07100' => 'bna', 'A03p11720' => 'bna', 'A05p08300' => 'bna', 'A05p13380' => 'bna', 'A09p54130' => 'bna', 'A10p16690' => 'bna', 'A10p16700' => 'bna', 'A10p33390' => 'bna', 'Aa31LG10G16020' => 'aar', 'Aa31LG1G11810' => 'aar', 'Aa31LG1G11830' => 'aar', 'Aa31LG1G22510' => 'aar', 'Aa31LG5G4890' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5793' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2310' => 'aag', 'Actinidia08499' => 'ach', 'Actinidia11262' => 'ach', 'Actinidia23926' => 'ach', 'Actinidia34420' => 'ach', 'Actinidia36970' => 'ach', 'Ah.02g111220' => 'amhyb', 'Ah.15g097750' => 'amhyb', 'AL4G27500' => 'aly', 'AL6G11470' => 'aly', 'AL8G35950' => 'aly', 'AL8G35960' => 'aly', 'AL8G35970' => 'aly', 'Aqoxy1G00912' => 'aox', 'Aqoxy2G02253' => 'aox', 'Aqoxy2G02411' => 'aox', 'Aqoxy5G00485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BZ66YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K8ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM4FUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6BF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HFV7XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25JBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0YNNV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MAKK6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P70IT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP2Z6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V61LZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YWP64R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3S9AI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7PGHH' => 'arhy', 'AT2G32150' => 'ath', 'AT3G62040' => 'ath', 'AT5G02230' => 'ath', 'AT5G59480' => 'ath', 'AT5G59490' => 'ath', 'ATR0332G060' => 'atr', 'ATR0559G190' => 'atr', 'ATR0693G294' => 'atr', 'Atru.chr3.3975' => 'acertr', 'Atru.chr3.3976' => 'acertr', 'Atru.chr3.3977' => 'acertr', 'Atru.chr4.2498' => 'acertr', 'Atru.chr5.838' => 'acertr', 'Atru.chr8.1990' => 'acertr', 'Atru.chr8.1991' => 'acertr', 'Atru.chr8.1992' => 'acertr', 'AUR62001759' => 'cqu', 'AUR62009545' => 'cqu', 'AUR62010474' => 'cqu', 'AUR62025820' => 'cqu', 'AUR62030422' => 'cqu', 'AUR62033605' => 'cqu', 'AUR62038615' => 'cqu', 'AUR62041347' => 'cqu', 'BcaB01g04574' => 'bca', 'BcaB02g09263' => 'bca', 'BcaB02g10453' => 'bca', 'BcaB05g22513' => 'bca', 'BcaB08g36253' => 'bca', 'BcaB08g36254' => 'bca', 'BcaC01g06519' => 'bca', 'BcaC02g11889' => 'bca', 'BcaC03g14010' => 'bca', 'BcaC03g18439' => 'bca', 'BcaC04g19765' => 'bca', 'BcaC09g48432' => 'bca', 'BcaNung07302' => 'bca', 'BolC2t06040H' => 'bol', 'BolC2t07346H' => 'bol', 'BolC3t13817H' => 'bol', 'BolC4t22625H' => 'bol', 'BolC4t23297H' => 'bol', 'BolC8t51278H' => 'bol', 'BolC9t58050H' => 'bol', 'BolC9t58051H' => 'bol', 'BolC9t60163H' => 'bol', 'BraA02t04712Z' => 'bra', 'BraA02t05791Z' => 'bra', 'BraA03t10483Z' => 'bra', 'BraA05t19795Z' => 'bra', 'BraA05t20276Z' => 'bra', 'BraA09t40827Z' => 'bra', 'BraA10t43750Z' => 'bra', 'BraA10t43751Z' => 'bra', 'BraA10t45370Z' => 'bra', 'C02p00400' => 'bna', 'C02p12460' => 'bna', 'C03p13680' => 'bna', 'C04p10270' => 'bna', 'C04p17500' => 'bna', 'C08p37010' => 'bna', 'C09p51880' => 'bna', 'C09p51890' => 'bna', 'C09p74300' => 'bna', 'CAN.G179.26' => 'can', 'CAN.G3384.1' => 'can', 'CAN.G394.68' => 'can', 'CAN.G907.13' => 'can', 'CANSAT11G0012' => 'cansat', 'CANSAT25G1586' => 'cansat', 'CANSAT35G0735' => 'cansat', 'CANSAT54G0556' => 'cansat', 'CANSAT64G0356' => 'cansat', 'CANSAT78G2042' => 'cansat', 'CARHR125920' => 'chi', 'CARHR131910' => 'chi', 'CARHR172390' => 'chi', 'CARHR211140' => 'chi', 'CARHR285850' => 'chi', 'CARHR285860' => 'chi', 'Carub.0004s1347' => 'cru', 'Carub.0004s1960' => 'cru', 'Carub.0005s2880' => 'cru', 'Carub.0006s0107' => 'cru', 'Carub.0008s2015' => 'cru', 'Carub.0008s2016' => 'cru', 'Carub.0008s2017' => 'cru', 'Ca_01315_v3' => 'car', 'Ca_05063_v3' => 'car', 'Ca_10231_v3' => 'car', 'Ca_10913_v3' => 'car', 'Ca_19156_v3' => 'car', 'Ca_23644_v3' => 'car', 'Ca_26735_v3' => 'car', 'Cc01_g13130' => 'ccan', 'Cc02_g21690' => 'ccan', 'Cc03_g03600' => 'ccan', 'Cc06_g02510' => 'ccan', 'CDE02G1265' => 'cde', 'CDE05G0415' => 'cde', 'CDE08G1082' => 'cde', 'Cfa005780' => 'cfa', 'Cfa011522' => 'cfa', 'Cfa011523' => 'cfa', 'Cfa015627' => 'cfa', 'Cfa017359' => 'cfa', 'Ciclev10005687m.g' => 'ccl', 'Ciclev10012173m.g' => 'ccl', 'Ciclev10021621m.g' => 'ccl', 'Ciclev10028968m.g' => 'ccl', 'Ciclev10029907m.g' => 'ccl', 'CiPaw.01G164800' => 'cil', 'CiPaw.07G083700' => 'cil', 'CiPaw.07G127000' => 'cil', 'CiPaw.07G136900' => 'cil', 'CiPaw.08G081700' => 'cil', 'CiPaw.09G194600' => 'cil', 'CiPaw.10G146500' => 'cil', 'CiPaw.13G091500' => 'cil', 'CiPaw.13G091600' => 'cil', 'ClCG00G003390' => 'cla', 'ClCG01G007220' => 'cla', 'ClCG03G001370' => 'cla', 'ClCG04G008100' => 'cla', 'ClCG06G006110' => 'cla', 'ClCG06G006130' => 'cla', 'ClCG10G021210' => 'cla', 'COL.COLO4_07648' => 'col', 'COL.COLO4_07650' => 'col', 'COL.COLO4_07651' => 'col', 'COL.COLO4_14780' => 'col', 'COL.COLO4_18546' => 'col', 'COL.COLO4_18547' => 'col', 'COL.COLO4_23103' => 'col', 'COL.COLO4_30419' => 'col', 'COL.COLO4_34232' => 'col', 'Cpa.g.sc169.20' => 'cpa', 'Cpa.g.sc57.45' => 'cpa', 'Cpa.g.sc58.124' => 'cpa', 'Cpa.g.sc58.125' => 'cpa', 'Cpa.g.sc81.118' => 'cpa', 'Cpa.g.sc81.119' => 'cpa', 'Cre12.g524700' => 'cre', 'CsaV3_1G034430' => 'csa', 'CsaV3_1G034440' => 'csa', 'CsaV3_1G034450' => 'csa', 'CsaV3_3G034830' => 'csa', 'CsaV3_4G025090' => 'csa', 'CsaV3_5G018660' => 'csa', 'CsaV3_6G038160' => 'csa', 'CSS0003447' => 'camsi', 'CSS0017840' => 'camsi', 'CSS0019260' => 'camsi', 'CSS0040375' => 'camsi', 'CSS0042533' => 'camsi', 'DCAR_005960' => 'dca', 'DCAR_012104' => 'dca', 'DCAR_012105' => 'dca', 'DCAR_012293' => 'dca', 'DCAR_015632' => 'dca', 'DCAR_024602' => 'dca', 'DCAR_028752' => 'dca', 'Dinv06261' => 'din', 'Dinv13982' => 'din', 'Dinv17029' => 'din', 'Dinv18463' => 'din', 'Dinv33181' => 'din', 'Dinv35585' => 'din', 'Dinv37161' => 'din', 'Dinv42977' => 'din', 'Dinv43122' => 'din', 'Dinv44517' => 'din', 'Duzib093G0256' => 'dzi', 'Duzib106G1254' => 'dzi', 'Duzib128G1789' => 'dzi', 'Duzib133G0633' => 'dzi', 'Duzib138G0510' => 'dzi', 'Duzib150G1084' => 'dzi', 'Duzib168G0488' => 'dzi', 'Duzib168G1523' => 'dzi', 'Duzib170G0133' => 'dzi', 'ECA234G1433' => 'eca', 'ECA236G1432' => 'eca', 'ECA236G2256' => 'eca', 'ECA236G2365' => 'eca', 'ECA236G4830' => 'eca', 'ECA248G1505' => 'eca', 'EL10Ac3g06431' => 'bvu', 'EL10Ac5g12577' => 'bvu', 'EL10Ac6g13533' => 'bvu', 'EL10Ac7g16045' => 'bvu', 'Eucgr.A01281' => 'egr', 'Eucgr.B02326' => 'egr', 'Eucgr.H03532' => 'egr', 'Eucgr.K00553' => 'egr', 'Eucgr.K03116' => 'egr', 'FAN02G3963' => 'fan', 'FAN05G0438' => 'fan', 'FAN09G2434' => 'fan', 'FAN12G3984' => 'fan', 'FAN14G0798' => 'fan', 'FAN17G0652' => 'fan', 'FAN19G1988' => 'fan', 'FAN22G0632' => 'fan', 'FAN23G0387' => 'fan', 'FAN26G1323' => 'fan', 'FAN28G0666' => 'fan', 'FvH4_1g26080' => 'fve', 'FvH4_3g36780' => 'fve', 'FvH4_4g15270' => 'fve', 'FvH4_6g13490' => 'fve', 'Glyma.01G098700' => 'gma', 'Glyma.03G065900' => 'gma', 'Glyma.03G073754' => 'gma', 'Glyma.03G073758' => 'gma', 'Glyma.03G083200' => 'gma', 'Glyma.03G225500' => 'gma', 'Glyma.05G037766' => 'gma', 'Glyma.07G133500' => 'gma', 'Glyma.10G139400' => 'gma', 'Glyma.10G248900' => 'gma', 'Glyma.11G137800' => 'gma', 'Glyma.12G061300' => 'gma', 'Glyma.13G337900' => 'gma', 'Glyma.15G036600' => 'gma', 'Glyma.18G182800' => 'gma', 'Glyma.19G222500' => 'gma', 'Glyma.20G144800' => 'gma', 'Gohir.A01G222000' => 'ghi', 'Gohir.A03G044000' => 'ghi', 'Gohir.A03G044100' => 'ghi', 'Gohir.A04G083100' => 'ghi', 'Gohir.A07G127200' => 'ghi', 'Gohir.A07G132400' => 'ghi', 'Gohir.A08G000700' => 'ghi', 'Gohir.A11G327300' => 'ghi', 'Gohir.D01G211500' => 'ghi', 'Gohir.D03G123400' => 'ghi', 'Gohir.D03G123500' => 'ghi', 'Gohir.D04G121800' => 'ghi', 'Gohir.D07G131500' => 'ghi', 'Gohir.D07G136600' => 'ghi', 'Gohir.D08G011600' => 'ghi', 'Gohir.D11G346200' => 'ghi', 'Gorai.001G142800' => 'gra', 'Gorai.001G148700' => 'gra', 'Gorai.002G257300' => 'gra', 'Gorai.003G130000' => 'gra', 'Gorai.003G130100' => 'gra', 'Gorai.004G005300' => 'gra', 'Gorai.007G376500' => 'gra', 'Gorai.012G104700' => 'gra', 'GSVIVG01017946001' => 'vvi', 'GSVIVG01024928001' => 'vvi', 'GSVIVG01028227001' => 'vvi', 'GSVIVG01034151001' => 'vvi', 'HanXRQChr05g0135031' => 'han', 'HanXRQChr05g0135041' => 'han', 'HanXRQChr05g0140021' => 'han', 'HanXRQChr06g0178981' => 'han', 'HanXRQChr07g0188251' => 'han', 'HanXRQChr08g0235311' => 'han', 'HanXRQChr09g0271011' => 'han', 'HanXRQChr10g0293321' => 'han', 'HanXRQChr13g0388171' => 'han', 'Haze_00916' => 'cav', 'Haze_05063' => 'cav', 'Haze_20814' => 'cav', 'Haze_24128' => 'cav', 'Hma1.2p1_0745F.1_g212010' => 'hma', 'Hma1.2p1_0757F.1_g213260' => 'hma', 'Hma1.2p1_0936F.1_g238840' => 'hma', 'Hma1.2p1_1735F.1_g299890' => 'hma', 'Hma1.2p1_1861F.1_g305685' => 'hma', 'HPP92_003397' => 'vpl', 'HPP92_012597' => 'vpl', 'HPP92_015520' => 'vpl', 'HPP92_015539' => 'vpl', 'HPP92_020373' => 'vpl', 'Hund04938' => 'sun', 'Hund10677' => 'sun', 'Hund11033' => 'sun', 'Hund12155' => 'sun', 'Lalb_Chr01g0022551' => 'lal', 'Lalb_Chr03g0042341' => 'lal', 'Lalb_Chr07g0192931' => 'lal', 'Lalb_Chr12g0209551' => 'lal', 'Lalb_Chr19g0125251' => 'lal', 'Lalb_Chr19g0137891' => 'lal', 'Lalb_Chr21g0304641' => 'lal', 'Lalb_Chr21g0309881' => 'lal', 'Lj1A5T12' => 'lonja', 'Lj1C148G10' => 'lonja', 'Lj2A93T83' => 'lonja', 'Lj3A738G68' => 'lonja', 'Lj3C966T1' => 'lonja', 'Lj3g0018958' => 'lja', 'Lj3g0021831' => 'lja', 'Lj3g0025443' => 'lja', 'Lj4g0026809' => 'lja', 'Lj5g0012558' => 'lja', 'Lj5g0021586' => 'lja', 'Lsat_1_v5_gn_5_156840' => 'lsa', 'Lsat_1_v5_gn_8_73460' => 'lsa', 'Lsat_1_v5_gn_8_73481' => 'lsa', 'Lsat_1_v5_gn_9_31601' => 'lsa', 'Lsat_1_v5_gn_9_77320' => 'lsa', 'Manes.01G171300' => 'mes', 'Manes.01G171400' => 'mes', 'Manes.01G236100' => 'mes', 'Manes.02G130500' => 'mes', 'Manes.02G130600' => 'mes', 'Manes.03G180200' => 'mes', 'Manes.05G007000' => 'mes', 'Manes.08G084400' => 'mes', 'Manes.09G092600' => 'mes', 'Manes.15G027900' => 'mes', 'MBI04_g40948_MAGBIO' => 'mbi', 'MBI14_g12123_MAGBIO' => 'mbi', 'MBI18_g28915_MAGBIO' => 'mbi', 'MCO09G053' => 'mco', 'MCO11G782' => 'mco', 'MCO15G215' => 'mco', 'MD03G1088500' => 'mdo', 'MD03G1088600' => 'mdo', 'MD04G1130800' => 'mdo', 'MD09G1291700' => 'mdo', 'MD11G1097500' => 'mdo', 'MD11G1097600' => 'mdo', 'MD12G1143900' => 'mdo', 'MD13G1191400' => 'mdo', 'MD16G1191500' => 'mdo', 'Medtr1g085570' => 'mtr', 'Medtr1g104610' => 'mtr', 'Medtr2g097520' => 'mtr', 'Medtr4g021800' => 'mtr', 'Medtr4g021825' => 'mtr', 'Medtr4g064270' => 'mtr', 'Medtr4g064380' => 'mtr', 'Medtr7g062150' => 'mtr', 'MELO3C003138.2' => 'cme', 'MELO3C005187.2' => 'cme', 'MELO3C009252.2' => 'cme', 'MELO3C014481.2' => 'cme', 'MELO3C020616.2' => 'cme', 'MELO3C020617.2' => 'cme', 'MELO3C020618.2' => 'cme', 'Migut.G00328' => 'egut', 'Migut.J00320' => 'egut', 'Migut.L01000' => 'egut', 'Migut.L01953' => 'egut', 'MSTRG.10253' => 'ama', 'MSTRG.19077' => 'ama', 'MSTRG.26780' => 'ama', 'MSTRG.4023' => 'ama', 'MSTRG.5655' => 'ama', 'MSTRG.9992' => 'ama', 'Nitab4.5_0000043g0310' => 'nta', 'Nitab4.5_0000463g0080' => 'nta', 'Nitab4.5_0000705g0170' => 'nta', 'Nitab4.5_0001326g0060' => 'nta', 'Nitab4.5_0001628g0030' => 'nta', 'Nitab4.5_0002103g0110' => 'nta', 'Nitab4.5_0002946g0030' => 'nta', 'Nitab4.5_0004639g0030' => 'nta', 'Nn2g11149' => 'nnu', 'Nn2g13389' => 'nnu', 'Nn4g25326' => 'nnu', 'Nn4g26290' => 'nnu', 'Nn5g29865' => 'nnu', 'Oeu004163.1' => 'oeu', 'Oeu006901.1' => 'oeu', 'Oeu010096.1' => 'oeu', 'Oeu024340.1' => 'oeu', 'Oeu048369.1' => 'oeu', 'Os01g0973000' => 'osa', 'Os03g0273800' => 'osa', 'Os03g0701200' => 'osa', 'Os03g0834050' => 'osa', 'Os07g0634400' => 'osa', 'Peaxi162Scf00092g01414' => 'pax', 'Peaxi162Scf00165g00818' => 'pax', 'Peaxi162Scf00309g00516' => 'pax', 'Peaxi162Scf00774g00218' => 'pax', 'PGR004G1824' => 'pgr', 'PGR004G2606' => 'pgr', 'PGR031G2716' => 'pgr', 'PGR102G2460' => 'pgr', 'PGR142G2599' => 'pgr', 'PGSC0003DMG400000843' => 'stu', 'PGSC0003DMG400008829' => 'stu', 'PGSC0003DMG400030418' => 'stu', 'PGSC0003DMG400031834' => 'stu', 'PGSC0003DMG401028300' => 'stu', 'PGSC0003DMG402028300' => 'stu', 'Phvul.001G219300' => 'pvu', 'Phvul.007G056000' => 'pvu', 'Phvul.007G208000' => 'pvu', 'Phvul.008G119500' => 'pvu', 'Phvul.010G011200' => 'pvu', 'Phvul.010G014800' => 'pvu', 'Phvul.011G062900' => 'pvu', 'Phvul.L007043' => 'pvu', 'Potri.001G242300' => 'ptr', 'Potri.002G185300' => 'ptr', 'Potri.006G086900' => 'ptr', 'Potri.008G151700' => 'ptr', 'Potri.009G033500' => 'ptr', 'Potri.010G089300' => 'ptr', 'Potri.014G110800' => 'ptr', 'Pp3c27_8130' => 'ppa', 'Pp3c6_27410' => 'ppa', 'PRCOL_00001659' => 'pco', 'PRCOL_00001927' => 'pco', 'PRCOL_00003649' => 'pco', 'Prupe.1G011600' => 'ppe', 'Prupe.3G000800' => 'ppe', 'Prupe.3G001100' => 'ppe', 'Prupe.6G072700' => 'ppe', 'Prupe.6G072800' => 'ppe', 'Prupe.6G257300' => 'ppe', 'Prupe.8G033000' => 'ppe', 'Psat0s2633g0080' => 'psa', 'Psat0s3396g0080' => 'psa', 'Psat0s3396g0200' => 'psa', 'Psat3g139080' => 'psa', 'Psat5g285080' => 'psa', 'Psat6g157760' => 'psa', 'Psat6g208440' => 'psa', 'Psat7g215320' => 'psa', 'Psat7g215400' => 'psa', 'Psat7g235600' => 'psa', 'Psat7g235760' => 'psa', 'PSO063G4603' => 'pso', 'PSO210G0182' => 'pso', 'PSO210G0196' => 'pso', 'PSO339G0394' => 'pso', 'PSO339G4127' => 'pso', 'PSO513G0064' => 'pso', 'PSO761G0079' => 'pso', 'QL01p031003' => 'qlo', 'QL01p031078' => 'qlo', 'QL06p003004' => 'qlo', 'QL07p048731' => 'qlo', 'QL09p037427' => 'qlo', 'RcHm_v2.0_Chr3g0466361' => 'rch', 'RcHm_v2.0_Chr3g0485571' => 'rch', 'RcHm_v2.0_Chr4g0416551' => 'rch', 'RcHm_v2.0_Chr5g0065831' => 'rch', 'Rhsim01G0230500' => 'rsi', 'Rhsim05G0194000' => 'rsi', 'Rhsim08G0250400' => 'rsi', 'Sabra02G0131000' => 'sbr', 'Sabra06G0066300' => 'sbr', 'Sabra08G0115500' => 'sbr', 'Sabra09G0023900' => 'sbr', 'Sabra10G0054000' => 'sbr', 'Sabra14G0081500' => 'sbr', 'Sabra16G0147100' => 'sbr', 'SalBow2G2957' => 'sbo', 'SalBow4G3320' => 'sbo', 'SalBow8G1894' => 'sbo', 'Sc07g0007950' => 'sci', 'Sc12g0001360' => 'sci', 'Sc13g0004330' => 'sci', 'Sc20g0005010' => 'sci', 'Sed0000361' => 'sed', 'Sed0001706' => 'sed', 'Sed0002422' => 'sed', 'Sed0004029' => 'sed', 'Sed0004602' => 'sed', 'Sed0004943' => 'sed', 'Sed0008646' => 'sed', 'Sed0023313' => 'sed', 'Sed0024843' => 'sed', 'SEGI_00081' => 'sgi', 'SEGI_00947' => 'sgi', 'SEGI_04046' => 'sgi', 'SEGI_06880' => 'sgi', 'SEGI_09736' => 'sgi', 'SEGI_12741' => 'sgi', 'SEGI_14530' => 'sgi', 'SEGI_20705' => 'sgi', 'SEGI_26088' => 'sgi', 'SEGI_28323' => 'sgi', 'SEGI_33343' => 'sgi', 'SGA_v2.0_scaffold126G33775' => 'sas', 'SGA_v2.0_scaffold2G01337' => 'sas', 'SGA_v2.0_scaffold38G15006' => 'sas', 'SGA_v2.0_scaffold39G15264' => 'sas', 'SGA_v2.0_scaffold453G51880' => 'sas', 'SHI12696' => 'shi', 'SMO367G1096' => 'smo', 'Solyc01g068630.3' => 'sly', 'Solyc05g011880.3' => 'sly', 'Solyc06g076300.3' => 'sly', 'Solyc09g010940.4' => 'sly', 'Solyc09g075890.3' => 'sly', 'Sopen01g030560' => 'spe', 'Sopen05g006630' => 'spe', 'Sopen06g032720' => 'spe', 'Sopen09g005660' => 'spe', 'Sopen09g030690' => 'spe', 'Sp4g14540' => 'spa', 'Sp4g20030' => 'spa', 'Sp5g01320' => 'spa', 'Sp6g21170' => 'spa', 'Sp6g21180' => 'spa', 'Sp6g21190' => 'spa', 'Sp6g40220' => 'spa', 'TAR362G0122' => 'tar', 'TAR362G1338' => 'tar', 'TAR369G0590' => 'tar', 'TAR371G0824' => 'tar', 'TAR622G1429' => 'tar', 'TAR623G0734' => 'tar', 'TAR625G0441' => 'tar', 'TAR629G0976' => 'tar', 'TAR633G1195' => 'tar', 'TAR636G2660' => 'tar', 'THA.LOC104799440' => 'tha', 'THA.LOC104800966' => 'tha', 'THA.LOC104806559' => 'tha', 'THA.LOC104810765' => 'tha', 'THA.LOC104816266' => 'tha', 'THA.LOC104817419' => 'tha', 'THA.LOC104827021' => 'tha', 'Thecc.01G327400' => 'tca', 'Thecc.04G229200' => 'tca', 'Thecc.05G037400' => 'tca', 'Thecc.09G318600' => 'tca', 'Thecc.09G318700' => 'tca', 'Thhalv10006238m.g' => 'esa', 'Thhalv10014321m.g' => 'esa', 'Thhalv10014335m.g' => 'esa', 'Thhalv10015826m.g' => 'esa', 'Thhalv10017107m.g' => 'esa', 'Thhalv10017180m.g' => 'esa', 'Thhalv10029339m.g' => 'esa', 'TPR.G1699' => 'tpr', 'TPR.G23609' => 'tpr', 'TPR.G3081' => 'tpr', 'TPR.G40397' => 'tpr', 'TPR.G5522' => 'tpr', 'TPR.G5618' => 'tpr', 'TPR.G5626' => 'tpr', 'TWI09G1632' => 'twi', 'TWI23G1230' => 'twi', 'TWI53G1064' => 'twi', 'TWI59G0751' => 'twi', 'TWI74G0947' => 'twi', 'TWI77G0337' => 'twi', 'TWI79G1254' => 'twi', 'unitig_0.g2341' => 'ugi', 'unitig_26.g10006' => 'ugi', 'unitig_26.g10008' => 'ugi', 'unitig_26.g9192' => 'ugi', 'vmacro14547' => 'vma', 'vmacro15333' => 'vma', 'vmacro18743' => 'vma', 'vmacro20166' => 'vma', 'VMungo0331G0523' => 'vmu', 'VMungo0331G1202' => 'vmu', 'VMungo0720G1228' => 'vmu', 'VMungo0720G1514' => 'vmu', 'VMungo1080G0169' => 'vmu', 'VMungo1127G1475' => 'vmu', 'VMungo1383G1208' => 'vmu', 'VMungo1383G1698' => 'vmu', 'Zm00001eb012270' => 'zma', 'Zm00001eb054100' => 'zma', 'Zm00001eb063350' => 'zma', 'Zm00001eb328560' => 'zma', 'Zm00001eb342820' => 'zma', 'Zm00001eb362210' => 'zma', 'Zm00001eb397730' => 'zma', 'Zm00001eb399750' => 'zma' ) $gf_id = 'HOM05D000959' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000959' ) $data_identifier = 'HOM05D000959' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 5, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 5, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 10, 'mbi' => (int) 3, 'mco' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 2, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 3, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 11, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399750' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000959', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '622', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p07100' => 'bna', 'A03p11720' => 'bna', 'A05p08300' => 'bna', 'A05p13380' => 'bna', 'A09p54130' => 'bna', 'A10p16690' => 'bna', 'A10p16700' => 'bna', 'A10p33390' => 'bna', 'Aa31LG10G16020' => 'aar', 'Aa31LG1G11810' => 'aar', 'Aa31LG1G11830' => 'aar', 'Aa31LG1G22510' => 'aar', 'Aa31LG5G4890' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5793' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2310' => 'aag', 'Actinidia08499' => 'ach', 'Actinidia11262' => 'ach', 'Actinidia23926' => 'ach', 'Actinidia34420' => 'ach', 'Actinidia36970' => 'ach', 'Ah.02g111220' => 'amhyb', 'Ah.15g097750' => 'amhyb', 'AL4G27500' => 'aly', 'AL6G11470' => 'aly', 'AL8G35950' => 'aly', 'AL8G35960' => 'aly', 'AL8G35970' => 'aly', 'Aqoxy1G00912' => 'aox', 'Aqoxy2G02253' => 'aox', 'Aqoxy2G02411' => 'aox', 'Aqoxy5G00485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BZ66YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K8ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM4FUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6BF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HFV7XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25JBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0YNNV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MAKK6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P70IT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP2Z6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V61LZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YWP64R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3S9AI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7PGHH' => 'arhy', 'AT2G32150' => 'ath', 'AT3G62040' => 'ath', 'AT5G02230' => 'ath', 'AT5G59480' => 'ath', 'AT5G59490' => 'ath', 'ATR0332G060' => 'atr', 'ATR0559G190' => 'atr', 'ATR0693G294' => 'atr', 'Atru.chr3.3975' => 'acertr', 'Atru.chr3.3976' => 'acertr', 'Atru.chr3.3977' => 'acertr', 'Atru.chr4.2498' => 'acertr', 'Atru.chr5.838' => 'acertr', 'Atru.chr8.1990' => 'acertr', 'Atru.chr8.1991' => 'acertr', 'Atru.chr8.1992' => 'acertr', 'AUR62001759' => 'cqu', 'AUR62009545' => 'cqu', 'AUR62010474' => 'cqu', 'AUR62025820' => 'cqu', 'AUR62030422' => 'cqu', 'AUR62033605' => 'cqu', 'AUR62038615' => 'cqu', 'AUR62041347' => 'cqu', 'BcaB01g04574' => 'bca', 'BcaB02g09263' => 'bca', 'BcaB02g10453' => 'bca', 'BcaB05g22513' => 'bca', 'BcaB08g36253' => 'bca', 'BcaB08g36254' => 'bca', 'BcaC01g06519' => 'bca', 'BcaC02g11889' => 'bca', 'BcaC03g14010' => 'bca', 'BcaC03g18439' => 'bca', 'BcaC04g19765' => 'bca', 'BcaC09g48432' => 'bca', 'BcaNung07302' => 'bca', 'BolC2t06040H' => 'bol', 'BolC2t07346H' => 'bol', 'BolC3t13817H' => 'bol', 'BolC4t22625H' => 'bol', 'BolC4t23297H' => 'bol', 'BolC8t51278H' => 'bol', 'BolC9t58050H' => 'bol', 'BolC9t58051H' => 'bol', 'BolC9t60163H' => 'bol', 'BraA02t04712Z' => 'bra', 'BraA02t05791Z' => 'bra', 'BraA03t10483Z' => 'bra', 'BraA05t19795Z' => 'bra', 'BraA05t20276Z' => 'bra', 'BraA09t40827Z' => 'bra', 'BraA10t43750Z' => 'bra', 'BraA10t43751Z' => 'bra', 'BraA10t45370Z' => 'bra', 'C02p00400' => 'bna', 'C02p12460' => 'bna', 'C03p13680' => 'bna', 'C04p10270' => 'bna', 'C04p17500' => 'bna', 'C08p37010' => 'bna', 'C09p51880' => 'bna', 'C09p51890' => 'bna', 'C09p74300' => 'bna', 'CAN.G179.26' => 'can', 'CAN.G3384.1' => 'can', 'CAN.G394.68' => 'can', 'CAN.G907.13' => 'can', 'CANSAT11G0012' => 'cansat', 'CANSAT25G1586' => 'cansat', 'CANSAT35G0735' => 'cansat', 'CANSAT54G0556' => 'cansat', 'CANSAT64G0356' => 'cansat', 'CANSAT78G2042' => 'cansat', 'CARHR125920' => 'chi', 'CARHR131910' => 'chi', 'CARHR172390' => 'chi', 'CARHR211140' => 'chi', 'CARHR285850' => 'chi', 'CARHR285860' => 'chi', 'Carub.0004s1347' => 'cru', 'Carub.0004s1960' => 'cru', 'Carub.0005s2880' => 'cru', 'Carub.0006s0107' => 'cru', 'Carub.0008s2015' => 'cru', 'Carub.0008s2016' => 'cru', 'Carub.0008s2017' => 'cru', 'Ca_01315_v3' => 'car', 'Ca_05063_v3' => 'car', 'Ca_10231_v3' => 'car', 'Ca_10913_v3' => 'car', 'Ca_19156_v3' => 'car', 'Ca_23644_v3' => 'car', 'Ca_26735_v3' => 'car', 'Cc01_g13130' => 'ccan', 'Cc02_g21690' => 'ccan', 'Cc03_g03600' => 'ccan', 'Cc06_g02510' => 'ccan', 'CDE02G1265' => 'cde', 'CDE05G0415' => 'cde', 'CDE08G1082' => 'cde', 'Cfa005780' => 'cfa', 'Cfa011522' => 'cfa', 'Cfa011523' => 'cfa', 'Cfa015627' => 'cfa', 'Cfa017359' => 'cfa', 'Ciclev10005687m.g' => 'ccl', 'Ciclev10012173m.g' => 'ccl', 'Ciclev10021621m.g' => 'ccl', 'Ciclev10028968m.g' => 'ccl', 'Ciclev10029907m.g' => 'ccl', 'CiPaw.01G164800' => 'cil', 'CiPaw.07G083700' => 'cil', 'CiPaw.07G127000' => 'cil', 'CiPaw.07G136900' => 'cil', 'CiPaw.08G081700' => 'cil', 'CiPaw.09G194600' => 'cil', 'CiPaw.10G146500' => 'cil', 'CiPaw.13G091500' => 'cil', 'CiPaw.13G091600' => 'cil', 'ClCG00G003390' => 'cla', 'ClCG01G007220' => 'cla', 'ClCG03G001370' => 'cla', 'ClCG04G008100' => 'cla', 'ClCG06G006110' => 'cla', 'ClCG06G006130' => 'cla', 'ClCG10G021210' => 'cla', 'COL.COLO4_07648' => 'col', 'COL.COLO4_07650' => 'col', 'COL.COLO4_07651' => 'col', 'COL.COLO4_14780' => 'col', 'COL.COLO4_18546' => 'col', 'COL.COLO4_18547' => 'col', 'COL.COLO4_23103' => 'col', 'COL.COLO4_30419' => 'col', 'COL.COLO4_34232' => 'col', 'Cpa.g.sc169.20' => 'cpa', 'Cpa.g.sc57.45' => 'cpa', 'Cpa.g.sc58.124' => 'cpa', 'Cpa.g.sc58.125' => 'cpa', 'Cpa.g.sc81.118' => 'cpa', 'Cpa.g.sc81.119' => 'cpa', 'Cre12.g524700' => 'cre', 'CsaV3_1G034430' => 'csa', 'CsaV3_1G034440' => 'csa', 'CsaV3_1G034450' => 'csa', 'CsaV3_3G034830' => 'csa', 'CsaV3_4G025090' => 'csa', 'CsaV3_5G018660' => 'csa', 'CsaV3_6G038160' => 'csa', 'CSS0003447' => 'camsi', 'CSS0017840' => 'camsi', 'CSS0019260' => 'camsi', 'CSS0040375' => 'camsi', 'CSS0042533' => 'camsi', 'DCAR_005960' => 'dca', 'DCAR_012104' => 'dca', 'DCAR_012105' => 'dca', 'DCAR_012293' => 'dca', 'DCAR_015632' => 'dca', 'DCAR_024602' => 'dca', 'DCAR_028752' => 'dca', 'Dinv06261' => 'din', 'Dinv13982' => 'din', 'Dinv17029' => 'din', 'Dinv18463' => 'din', 'Dinv33181' => 'din', 'Dinv35585' => 'din', 'Dinv37161' => 'din', 'Dinv42977' => 'din', 'Dinv43122' => 'din', 'Dinv44517' => 'din', 'Duzib093G0256' => 'dzi', 'Duzib106G1254' => 'dzi', 'Duzib128G1789' => 'dzi', 'Duzib133G0633' => 'dzi', 'Duzib138G0510' => 'dzi', 'Duzib150G1084' => 'dzi', 'Duzib168G0488' => 'dzi', 'Duzib168G1523' => 'dzi', 'Duzib170G0133' => 'dzi', 'ECA234G1433' => 'eca', 'ECA236G1432' => 'eca', 'ECA236G2256' => 'eca', 'ECA236G2365' => 'eca', 'ECA236G4830' => 'eca', 'ECA248G1505' => 'eca', 'EL10Ac3g06431' => 'bvu', 'EL10Ac5g12577' => 'bvu', 'EL10Ac6g13533' => 'bvu', 'EL10Ac7g16045' => 'bvu', 'Eucgr.A01281' => 'egr', 'Eucgr.B02326' => 'egr', 'Eucgr.H03532' => 'egr', 'Eucgr.K00553' => 'egr', 'Eucgr.K03116' => 'egr', 'FAN02G3963' => 'fan', 'FAN05G0438' => 'fan', 'FAN09G2434' => 'fan', 'FAN12G3984' => 'fan', 'FAN14G0798' => 'fan', 'FAN17G0652' => 'fan', 'FAN19G1988' => 'fan', 'FAN22G0632' => 'fan', 'FAN23G0387' => 'fan', 'FAN26G1323' => 'fan', 'FAN28G0666' => 'fan', 'FvH4_1g26080' => 'fve', 'FvH4_3g36780' => 'fve', 'FvH4_4g15270' => 'fve', 'FvH4_6g13490' => 'fve', 'Glyma.01G098700' => 'gma', 'Glyma.03G065900' => 'gma', 'Glyma.03G073754' => 'gma', 'Glyma.03G073758' => 'gma', 'Glyma.03G083200' => 'gma', 'Glyma.03G225500' => 'gma', 'Glyma.05G037766' => 'gma', 'Glyma.07G133500' => 'gma', 'Glyma.10G139400' => 'gma', 'Glyma.10G248900' => 'gma', 'Glyma.11G137800' => 'gma', 'Glyma.12G061300' => 'gma', 'Glyma.13G337900' => 'gma', 'Glyma.15G036600' => 'gma', 'Glyma.18G182800' => 'gma', 'Glyma.19G222500' => 'gma', 'Glyma.20G144800' => 'gma', 'Gohir.A01G222000' => 'ghi', 'Gohir.A03G044000' => 'ghi', 'Gohir.A03G044100' => 'ghi', 'Gohir.A04G083100' => 'ghi', 'Gohir.A07G127200' => 'ghi', 'Gohir.A07G132400' => 'ghi', 'Gohir.A08G000700' => 'ghi', 'Gohir.A11G327300' => 'ghi', 'Gohir.D01G211500' => 'ghi', 'Gohir.D03G123400' => 'ghi', 'Gohir.D03G123500' => 'ghi', 'Gohir.D04G121800' => 'ghi', 'Gohir.D07G131500' => 'ghi', 'Gohir.D07G136600' => 'ghi', 'Gohir.D08G011600' => 'ghi', 'Gohir.D11G346200' => 'ghi', 'Gorai.001G142800' => 'gra', 'Gorai.001G148700' => 'gra', 'Gorai.002G257300' => 'gra', 'Gorai.003G130000' => 'gra', 'Gorai.003G130100' => 'gra', 'Gorai.004G005300' => 'gra', 'Gorai.007G376500' => 'gra', 'Gorai.012G104700' => 'gra', 'GSVIVG01017946001' => 'vvi', 'GSVIVG01024928001' => 'vvi', 'GSVIVG01028227001' => 'vvi', 'GSVIVG01034151001' => 'vvi', 'HanXRQChr05g0135031' => 'han', 'HanXRQChr05g0135041' => 'han', 'HanXRQChr05g0140021' => 'han', 'HanXRQChr06g0178981' => 'han', 'HanXRQChr07g0188251' => 'han', 'HanXRQChr08g0235311' => 'han', 'HanXRQChr09g0271011' => 'han', 'HanXRQChr10g0293321' => 'han', 'HanXRQChr13g0388171' => 'han', 'Haze_00916' => 'cav', 'Haze_05063' => 'cav', 'Haze_20814' => 'cav', 'Haze_24128' => 'cav', 'Hma1.2p1_0745F.1_g212010' => 'hma', 'Hma1.2p1_0757F.1_g213260' => 'hma', 'Hma1.2p1_0936F.1_g238840' => 'hma', 'Hma1.2p1_1735F.1_g299890' => 'hma', 'Hma1.2p1_1861F.1_g305685' => 'hma', 'HPP92_003397' => 'vpl', 'HPP92_012597' => 'vpl', 'HPP92_015520' => 'vpl', 'HPP92_015539' => 'vpl', 'HPP92_020373' => 'vpl', 'Hund04938' => 'sun', 'Hund10677' => 'sun', 'Hund11033' => 'sun', 'Hund12155' => 'sun', 'Lalb_Chr01g0022551' => 'lal', 'Lalb_Chr03g0042341' => 'lal', 'Lalb_Chr07g0192931' => 'lal', 'Lalb_Chr12g0209551' => 'lal', 'Lalb_Chr19g0125251' => 'lal', 'Lalb_Chr19g0137891' => 'lal', 'Lalb_Chr21g0304641' => 'lal', 'Lalb_Chr21g0309881' => 'lal', 'Lj1A5T12' => 'lonja', 'Lj1C148G10' => 'lonja', 'Lj2A93T83' => 'lonja', 'Lj3A738G68' => 'lonja', 'Lj3C966T1' => 'lonja', 'Lj3g0018958' => 'lja', 'Lj3g0021831' => 'lja', 'Lj3g0025443' => 'lja', 'Lj4g0026809' => 'lja', 'Lj5g0012558' => 'lja', 'Lj5g0021586' => 'lja', 'Lsat_1_v5_gn_5_156840' => 'lsa', 'Lsat_1_v5_gn_8_73460' => 'lsa', 'Lsat_1_v5_gn_8_73481' => 'lsa', 'Lsat_1_v5_gn_9_31601' => 'lsa', 'Lsat_1_v5_gn_9_77320' => 'lsa', 'Manes.01G171300' => 'mes', 'Manes.01G171400' => 'mes', 'Manes.01G236100' => 'mes', 'Manes.02G130500' => 'mes', 'Manes.02G130600' => 'mes', 'Manes.03G180200' => 'mes', 'Manes.05G007000' => 'mes', 'Manes.08G084400' => 'mes', 'Manes.09G092600' => 'mes', 'Manes.15G027900' => 'mes', 'MBI04_g40948_MAGBIO' => 'mbi', 'MBI14_g12123_MAGBIO' => 'mbi', 'MBI18_g28915_MAGBIO' => 'mbi', 'MCO09G053' => 'mco', 'MCO11G782' => 'mco', 'MCO15G215' => 'mco', 'MD03G1088500' => 'mdo', 'MD03G1088600' => 'mdo', 'MD04G1130800' => 'mdo', 'MD09G1291700' => 'mdo', 'MD11G1097500' => 'mdo', 'MD11G1097600' => 'mdo', 'MD12G1143900' => 'mdo', 'MD13G1191400' => 'mdo', 'MD16G1191500' => 'mdo', 'Medtr1g085570' => 'mtr', 'Medtr1g104610' => 'mtr', 'Medtr2g097520' => 'mtr', 'Medtr4g021800' => 'mtr', 'Medtr4g021825' => 'mtr', 'Medtr4g064270' => 'mtr', 'Medtr4g064380' => 'mtr', 'Medtr7g062150' => 'mtr', 'MELO3C003138.2' => 'cme', 'MELO3C005187.2' => 'cme', 'MELO3C009252.2' => 'cme', 'MELO3C014481.2' => 'cme', 'MELO3C020616.2' => 'cme', 'MELO3C020617.2' => 'cme', 'MELO3C020618.2' => 'cme', 'Migut.G00328' => 'egut', 'Migut.J00320' => 'egut', 'Migut.L01000' => 'egut', 'Migut.L01953' => 'egut', 'MSTRG.10253' => 'ama', 'MSTRG.19077' => 'ama', 'MSTRG.26780' => 'ama', 'MSTRG.4023' => 'ama', 'MSTRG.5655' => 'ama', 'MSTRG.9992' => 'ama', 'Nitab4.5_0000043g0310' => 'nta', 'Nitab4.5_0000463g0080' => 'nta', 'Nitab4.5_0000705g0170' => 'nta', 'Nitab4.5_0001326g0060' => 'nta', 'Nitab4.5_0001628g0030' => 'nta', 'Nitab4.5_0002103g0110' => 'nta', 'Nitab4.5_0002946g0030' => 'nta', 'Nitab4.5_0004639g0030' => 'nta', 'Nn2g11149' => 'nnu', 'Nn2g13389' => 'nnu', 'Nn4g25326' => 'nnu', 'Nn4g26290' => 'nnu', 'Nn5g29865' => 'nnu', 'Oeu004163.1' => 'oeu', 'Oeu006901.1' => 'oeu', 'Oeu010096.1' => 'oeu', 'Oeu024340.1' => 'oeu', 'Oeu048369.1' => 'oeu', 'Os01g0973000' => 'osa', 'Os03g0273800' => 'osa', 'Os03g0701200' => 'osa', 'Os03g0834050' => 'osa', 'Os07g0634400' => 'osa', 'Peaxi162Scf00092g01414' => 'pax', 'Peaxi162Scf00165g00818' => 'pax', 'Peaxi162Scf00309g00516' => 'pax', 'Peaxi162Scf00774g00218' => 'pax', 'PGR004G1824' => 'pgr', 'PGR004G2606' => 'pgr', 'PGR031G2716' => 'pgr', 'PGR102G2460' => 'pgr', 'PGR142G2599' => 'pgr', 'PGSC0003DMG400000843' => 'stu', 'PGSC0003DMG400008829' => 'stu', 'PGSC0003DMG400030418' => 'stu', 'PGSC0003DMG400031834' => 'stu', 'PGSC0003DMG401028300' => 'stu', 'PGSC0003DMG402028300' => 'stu', 'Phvul.001G219300' => 'pvu', 'Phvul.007G056000' => 'pvu', 'Phvul.007G208000' => 'pvu', 'Phvul.008G119500' => 'pvu', 'Phvul.010G011200' => 'pvu', 'Phvul.010G014800' => 'pvu', 'Phvul.011G062900' => 'pvu', 'Phvul.L007043' => 'pvu', 'Potri.001G242300' => 'ptr', 'Potri.002G185300' => 'ptr', 'Potri.006G086900' => 'ptr', 'Potri.008G151700' => 'ptr', 'Potri.009G033500' => 'ptr', 'Potri.010G089300' => 'ptr', 'Potri.014G110800' => 'ptr', 'Pp3c27_8130' => 'ppa', 'Pp3c6_27410' => 'ppa', 'PRCOL_00001659' => 'pco', 'PRCOL_00001927' => 'pco', 'PRCOL_00003649' => 'pco', 'Prupe.1G011600' => 'ppe', 'Prupe.3G000800' => 'ppe', 'Prupe.3G001100' => 'ppe', 'Prupe.6G072700' => 'ppe', 'Prupe.6G072800' => 'ppe', 'Prupe.6G257300' => 'ppe', 'Prupe.8G033000' => 'ppe', 'Psat0s2633g0080' => 'psa', 'Psat0s3396g0080' => 'psa', 'Psat0s3396g0200' => 'psa', 'Psat3g139080' => 'psa', 'Psat5g285080' => 'psa', 'Psat6g157760' => 'psa', 'Psat6g208440' => 'psa', 'Psat7g215320' => 'psa', 'Psat7g215400' => 'psa', 'Psat7g235600' => 'psa', 'Psat7g235760' => 'psa', 'PSO063G4603' => 'pso', 'PSO210G0182' => 'pso', 'PSO210G0196' => 'pso', 'PSO339G0394' => 'pso', 'PSO339G4127' => 'pso', 'PSO513G0064' => 'pso', 'PSO761G0079' => 'pso', 'QL01p031003' => 'qlo', 'QL01p031078' => 'qlo', 'QL06p003004' => 'qlo', 'QL07p048731' => 'qlo', 'QL09p037427' => 'qlo', 'RcHm_v2.0_Chr3g0466361' => 'rch', 'RcHm_v2.0_Chr3g0485571' => 'rch', 'RcHm_v2.0_Chr4g0416551' => 'rch', 'RcHm_v2.0_Chr5g0065831' => 'rch', 'Rhsim01G0230500' => 'rsi', 'Rhsim05G0194000' => 'rsi', 'Rhsim08G0250400' => 'rsi', 'Sabra02G0131000' => 'sbr', 'Sabra06G0066300' => 'sbr', 'Sabra08G0115500' => 'sbr', 'Sabra09G0023900' => 'sbr', 'Sabra10G0054000' => 'sbr', 'Sabra14G0081500' => 'sbr', 'Sabra16G0147100' => 'sbr', 'SalBow2G2957' => 'sbo', 'SalBow4G3320' => 'sbo', 'SalBow8G1894' => 'sbo', 'Sc07g0007950' => 'sci', 'Sc12g0001360' => 'sci', 'Sc13g0004330' => 'sci', 'Sc20g0005010' => 'sci', 'Sed0000361' => 'sed', 'Sed0001706' => 'sed', 'Sed0002422' => 'sed', 'Sed0004029' => 'sed', 'Sed0004602' => 'sed', 'Sed0004943' => 'sed', 'Sed0008646' => 'sed', 'Sed0023313' => 'sed', 'Sed0024843' => 'sed', 'SEGI_00081' => 'sgi', 'SEGI_00947' => 'sgi', 'SEGI_04046' => 'sgi', 'SEGI_06880' => 'sgi', 'SEGI_09736' => 'sgi', 'SEGI_12741' => 'sgi', 'SEGI_14530' => 'sgi', 'SEGI_20705' => 'sgi', 'SEGI_26088' => 'sgi', 'SEGI_28323' => 'sgi', 'SEGI_33343' => 'sgi', 'SGA_v2.0_scaffold126G33775' => 'sas', 'SGA_v2.0_scaffold2G01337' => 'sas', 'SGA_v2.0_scaffold38G15006' => 'sas', 'SGA_v2.0_scaffold39G15264' => 'sas', 'SGA_v2.0_scaffold453G51880' => 'sas', 'SHI12696' => 'shi', 'SMO367G1096' => 'smo', 'Solyc01g068630.3' => 'sly', 'Solyc05g011880.3' => 'sly', 'Solyc06g076300.3' => 'sly', 'Solyc09g010940.4' => 'sly', 'Solyc09g075890.3' => 'sly', 'Sopen01g030560' => 'spe', 'Sopen05g006630' => 'spe', 'Sopen06g032720' => 'spe', 'Sopen09g005660' => 'spe', 'Sopen09g030690' => 'spe', 'Sp4g14540' => 'spa', 'Sp4g20030' => 'spa', 'Sp5g01320' => 'spa', 'Sp6g21170' => 'spa', 'Sp6g21180' => 'spa', 'Sp6g21190' => 'spa', 'Sp6g40220' => 'spa', 'TAR362G0122' => 'tar', 'TAR362G1338' => 'tar', 'TAR369G0590' => 'tar', 'TAR371G0824' => 'tar', 'TAR622G1429' => 'tar', 'TAR623G0734' => 'tar', 'TAR625G0441' => 'tar', 'TAR629G0976' => 'tar', 'TAR633G1195' => 'tar', 'TAR636G2660' => 'tar', 'THA.LOC104799440' => 'tha', 'THA.LOC104800966' => 'tha', 'THA.LOC104806559' => 'tha', 'THA.LOC104810765' => 'tha', 'THA.LOC104816266' => 'tha', 'THA.LOC104817419' => 'tha', 'THA.LOC104827021' => 'tha', 'Thecc.01G327400' => 'tca', 'Thecc.04G229200' => 'tca', 'Thecc.05G037400' => 'tca', 'Thecc.09G318600' => 'tca', 'Thecc.09G318700' => 'tca', 'Thhalv10006238m.g' => 'esa', 'Thhalv10014321m.g' => 'esa', 'Thhalv10014335m.g' => 'esa', 'Thhalv10015826m.g' => 'esa', 'Thhalv10017107m.g' => 'esa', 'Thhalv10017180m.g' => 'esa', 'Thhalv10029339m.g' => 'esa', 'TPR.G1699' => 'tpr', 'TPR.G23609' => 'tpr', 'TPR.G3081' => 'tpr', 'TPR.G40397' => 'tpr', 'TPR.G5522' => 'tpr', 'TPR.G5618' => 'tpr', 'TPR.G5626' => 'tpr', 'TWI09G1632' => 'twi', 'TWI23G1230' => 'twi', 'TWI53G1064' => 'twi', 'TWI59G0751' => 'twi', 'TWI74G0947' => 'twi', 'TWI77G0337' => 'twi', 'TWI79G1254' => 'twi', 'unitig_0.g2341' => 'ugi', 'unitig_26.g10006' => 'ugi', 'unitig_26.g10008' => 'ugi', 'unitig_26.g9192' => 'ugi', 'vmacro14547' => 'vma', 'vmacro15333' => 'vma', 'vmacro18743' => 'vma', 'vmacro20166' => 'vma', 'VMungo0331G0523' => 'vmu', 'VMungo0331G1202' => 'vmu', 'VMungo0720G1228' => 'vmu', 'VMungo0720G1514' => 'vmu', 'VMungo1080G0169' => 'vmu', 'VMungo1127G1475' => 'vmu', 'VMungo1383G1208' => 'vmu', 'VMungo1383G1698' => 'vmu', 'Zm00001eb012270' => 'zma', 'Zm00001eb054100' => 'zma', 'Zm00001eb063350' => 'zma', 'Zm00001eb328560' => 'zma', 'Zm00001eb342820' => 'zma', 'Zm00001eb362210' => 'zma', 'Zm00001eb397730' => 'zma', 'Zm00001eb399750' => 'zma' ), 'gf_id' => 'HOM05D000959', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000959' ), 'data_identifier' => 'HOM05D000959', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000959', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '622', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p07100' => 'bna', 'A03p11720' => 'bna', 'A05p08300' => 'bna', 'A05p13380' => 'bna', 'A09p54130' => 'bna', 'A10p16690' => 'bna', 'A10p16700' => 'bna', 'A10p33390' => 'bna', 'Aa31LG10G16020' => 'aar', 'Aa31LG1G11810' => 'aar', 'Aa31LG1G11830' => 'aar', 'Aa31LG1G22510' => 'aar', 'Aa31LG5G4890' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5793' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2310' => 'aag', 'Actinidia08499' => 'ach', 'Actinidia11262' => 'ach', 'Actinidia23926' => 'ach', 'Actinidia34420' => 'ach', 'Actinidia36970' => 'ach', 'Ah.02g111220' => 'amhyb', 'Ah.15g097750' => 'amhyb', 'AL4G27500' => 'aly', 'AL6G11470' => 'aly', 'AL8G35950' => 'aly', 'AL8G35960' => 'aly', 'AL8G35970' => 'aly', 'Aqoxy1G00912' => 'aox', 'Aqoxy2G02253' => 'aox', 'Aqoxy2G02411' => 'aox', 'Aqoxy5G00485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BZ66YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K8ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM4FUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6BF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HFV7XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25JBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0YNNV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MAKK6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P70IT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP2Z6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V61LZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YWP64R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3S9AI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7PGHH' => 'arhy', 'AT2G32150' => 'ath', 'AT3G62040' => 'ath', 'AT5G02230' => 'ath', 'AT5G59480' => 'ath', 'AT5G59490' => 'ath', 'ATR0332G060' => 'atr', 'ATR0559G190' => 'atr', 'ATR0693G294' => 'atr', 'Atru.chr3.3975' => 'acertr', 'Atru.chr3.3976' => 'acertr', 'Atru.chr3.3977' => 'acertr', 'Atru.chr4.2498' => 'acertr', 'Atru.chr5.838' => 'acertr', 'Atru.chr8.1990' => 'acertr', 'Atru.chr8.1991' => 'acertr', 'Atru.chr8.1992' => 'acertr', 'AUR62001759' => 'cqu', 'AUR62009545' => 'cqu', 'AUR62010474' => 'cqu', 'AUR62025820' => 'cqu', 'AUR62030422' => 'cqu', 'AUR62033605' => 'cqu', 'AUR62038615' => 'cqu', 'AUR62041347' => 'cqu', 'BcaB01g04574' => 'bca', 'BcaB02g09263' => 'bca', 'BcaB02g10453' => 'bca', 'BcaB05g22513' => 'bca', 'BcaB08g36253' => 'bca', 'BcaB08g36254' => 'bca', 'BcaC01g06519' => 'bca', 'BcaC02g11889' => 'bca', 'BcaC03g14010' => 'bca', 'BcaC03g18439' => 'bca', 'BcaC04g19765' => 'bca', 'BcaC09g48432' => 'bca', 'BcaNung07302' => 'bca', 'BolC2t06040H' => 'bol', 'BolC2t07346H' => 'bol', 'BolC3t13817H' => 'bol', 'BolC4t22625H' => 'bol', 'BolC4t23297H' => 'bol', 'BolC8t51278H' => 'bol', 'BolC9t58050H' => 'bol', 'BolC9t58051H' => 'bol', 'BolC9t60163H' => 'bol', 'BraA02t04712Z' => 'bra', 'BraA02t05791Z' => 'bra', 'BraA03t10483Z' => 'bra', 'BraA05t19795Z' => 'bra', 'BraA05t20276Z' => 'bra', 'BraA09t40827Z' => 'bra', 'BraA10t43750Z' => 'bra', 'BraA10t43751Z' => 'bra', 'BraA10t45370Z' => 'bra', 'C02p00400' => 'bna', 'C02p12460' => 'bna', 'C03p13680' => 'bna', 'C04p10270' => 'bna', 'C04p17500' => 'bna', 'C08p37010' => 'bna', 'C09p51880' => 'bna', 'C09p51890' => 'bna', 'C09p74300' => 'bna', 'CAN.G179.26' => 'can', 'CAN.G3384.1' => 'can', 'CAN.G394.68' => 'can', 'CAN.G907.13' => 'can', 'CANSAT11G0012' => 'cansat', 'CANSAT25G1586' => 'cansat', 'CANSAT35G0735' => 'cansat', 'CANSAT54G0556' => 'cansat', 'CANSAT64G0356' => 'cansat', 'CANSAT78G2042' => 'cansat', 'CARHR125920' => 'chi', 'CARHR131910' => 'chi', 'CARHR172390' => 'chi', 'CARHR211140' => 'chi', 'CARHR285850' => 'chi', 'CARHR285860' => 'chi', 'Carub.0004s1347' => 'cru', 'Carub.0004s1960' => 'cru', 'Carub.0005s2880' => 'cru', 'Carub.0006s0107' => 'cru', 'Carub.0008s2015' => 'cru', 'Carub.0008s2016' => 'cru', 'Carub.0008s2017' => 'cru', 'Ca_01315_v3' => 'car', 'Ca_05063_v3' => 'car', 'Ca_10231_v3' => 'car', 'Ca_10913_v3' => 'car', 'Ca_19156_v3' => 'car', 'Ca_23644_v3' => 'car', 'Ca_26735_v3' => 'car', 'Cc01_g13130' => 'ccan', 'Cc02_g21690' => 'ccan', 'Cc03_g03600' => 'ccan', 'Cc06_g02510' => 'ccan', 'CDE02G1265' => 'cde', 'CDE05G0415' => 'cde', 'CDE08G1082' => 'cde', 'Cfa005780' => 'cfa', 'Cfa011522' => 'cfa', 'Cfa011523' => 'cfa', 'Cfa015627' => 'cfa', 'Cfa017359' => 'cfa', 'Ciclev10005687m.g' => 'ccl', 'Ciclev10012173m.g' => 'ccl', 'Ciclev10021621m.g' => 'ccl', 'Ciclev10028968m.g' => 'ccl', 'Ciclev10029907m.g' => 'ccl', 'CiPaw.01G164800' => 'cil', 'CiPaw.07G083700' => 'cil', 'CiPaw.07G127000' => 'cil', 'CiPaw.07G136900' => 'cil', 'CiPaw.08G081700' => 'cil', 'CiPaw.09G194600' => 'cil', 'CiPaw.10G146500' => 'cil', 'CiPaw.13G091500' => 'cil', 'CiPaw.13G091600' => 'cil', 'ClCG00G003390' => 'cla', 'ClCG01G007220' => 'cla', 'ClCG03G001370' => 'cla', 'ClCG04G008100' => 'cla', 'ClCG06G006110' => 'cla', 'ClCG06G006130' => 'cla', 'ClCG10G021210' => 'cla', 'COL.COLO4_07648' => 'col', 'COL.COLO4_07650' => 'col', 'COL.COLO4_07651' => 'col', 'COL.COLO4_14780' => 'col', 'COL.COLO4_18546' => 'col', 'COL.COLO4_18547' => 'col', 'COL.COLO4_23103' => 'col', 'COL.COLO4_30419' => 'col', 'COL.COLO4_34232' => 'col', 'Cpa.g.sc169.20' => 'cpa', 'Cpa.g.sc57.45' => 'cpa', 'Cpa.g.sc58.124' => 'cpa', 'Cpa.g.sc58.125' => 'cpa', 'Cpa.g.sc81.118' => 'cpa', 'Cpa.g.sc81.119' => 'cpa', 'Cre12.g524700' => 'cre', 'CsaV3_1G034430' => 'csa', 'CsaV3_1G034440' => 'csa', 'CsaV3_1G034450' => 'csa', 'CsaV3_3G034830' => 'csa', 'CsaV3_4G025090' => 'csa', 'CsaV3_5G018660' => 'csa', 'CsaV3_6G038160' => 'csa', 'CSS0003447' => 'camsi', 'CSS0017840' => 'camsi', 'CSS0019260' => 'camsi', 'CSS0040375' => 'camsi', 'CSS0042533' => 'camsi', 'DCAR_005960' => 'dca', 'DCAR_012104' => 'dca', 'DCAR_012105' => 'dca', 'DCAR_012293' => 'dca', 'DCAR_015632' => 'dca', 'DCAR_024602' => 'dca', 'DCAR_028752' => 'dca', 'Dinv06261' => 'din', 'Dinv13982' => 'din', 'Dinv17029' => 'din', 'Dinv18463' => 'din', 'Dinv33181' => 'din', 'Dinv35585' => 'din', 'Dinv37161' => 'din', 'Dinv42977' => 'din', 'Dinv43122' => 'din', 'Dinv44517' => 'din', 'Duzib093G0256' => 'dzi', 'Duzib106G1254' => 'dzi', 'Duzib128G1789' => 'dzi', 'Duzib133G0633' => 'dzi', 'Duzib138G0510' => 'dzi', 'Duzib150G1084' => 'dzi', 'Duzib168G0488' => 'dzi', 'Duzib168G1523' => 'dzi', 'Duzib170G0133' => 'dzi', 'ECA234G1433' => 'eca', 'ECA236G1432' => 'eca', 'ECA236G2256' => 'eca', 'ECA236G2365' => 'eca', 'ECA236G4830' => 'eca', 'ECA248G1505' => 'eca', 'EL10Ac3g06431' => 'bvu', 'EL10Ac5g12577' => 'bvu', 'EL10Ac6g13533' => 'bvu', 'EL10Ac7g16045' => 'bvu', 'Eucgr.A01281' => 'egr', 'Eucgr.B02326' => 'egr', 'Eucgr.H03532' => 'egr', 'Eucgr.K00553' => 'egr', 'Eucgr.K03116' => 'egr', 'FAN02G3963' => 'fan', 'FAN05G0438' => 'fan', 'FAN09G2434' => 'fan', 'FAN12G3984' => 'fan', 'FAN14G0798' => 'fan', 'FAN17G0652' => 'fan', 'FAN19G1988' => 'fan', 'FAN22G0632' => 'fan', 'FAN23G0387' => 'fan', 'FAN26G1323' => 'fan', 'FAN28G0666' => 'fan', 'FvH4_1g26080' => 'fve', 'FvH4_3g36780' => 'fve', 'FvH4_4g15270' => 'fve', 'FvH4_6g13490' => 'fve', 'Glyma.01G098700' => 'gma', 'Glyma.03G065900' => 'gma', 'Glyma.03G073754' => 'gma', 'Glyma.03G073758' => 'gma', 'Glyma.03G083200' => 'gma', 'Glyma.03G225500' => 'gma', 'Glyma.05G037766' => 'gma', 'Glyma.07G133500' => 'gma', 'Glyma.10G139400' => 'gma', 'Glyma.10G248900' => 'gma', 'Glyma.11G137800' => 'gma', 'Glyma.12G061300' => 'gma', 'Glyma.13G337900' => 'gma', 'Glyma.15G036600' => 'gma', 'Glyma.18G182800' => 'gma', 'Glyma.19G222500' => 'gma', 'Glyma.20G144800' => 'gma', 'Gohir.A01G222000' => 'ghi', 'Gohir.A03G044000' => 'ghi', 'Gohir.A03G044100' => 'ghi', 'Gohir.A04G083100' => 'ghi', 'Gohir.A07G127200' => 'ghi', 'Gohir.A07G132400' => 'ghi', 'Gohir.A08G000700' => 'ghi', 'Gohir.A11G327300' => 'ghi', 'Gohir.D01G211500' => 'ghi', 'Gohir.D03G123400' => 'ghi', 'Gohir.D03G123500' => 'ghi', 'Gohir.D04G121800' => 'ghi', 'Gohir.D07G131500' => 'ghi', 'Gohir.D07G136600' => 'ghi', 'Gohir.D08G011600' => 'ghi', 'Gohir.D11G346200' => 'ghi', 'Gorai.001G142800' => 'gra', 'Gorai.001G148700' => 'gra', 'Gorai.002G257300' => 'gra', 'Gorai.003G130000' => 'gra', 'Gorai.003G130100' => 'gra', 'Gorai.004G005300' => 'gra', 'Gorai.007G376500' => 'gra', 'Gorai.012G104700' => 'gra', 'GSVIVG01017946001' => 'vvi', 'GSVIVG01024928001' => 'vvi', 'GSVIVG01028227001' => 'vvi', 'GSVIVG01034151001' => 'vvi', 'HanXRQChr05g0135031' => 'han', 'HanXRQChr05g0135041' => 'han', 'HanXRQChr05g0140021' => 'han', 'HanXRQChr06g0178981' => 'han', 'HanXRQChr07g0188251' => 'han', 'HanXRQChr08g0235311' => 'han', 'HanXRQChr09g0271011' => 'han', 'HanXRQChr10g0293321' => 'han', 'HanXRQChr13g0388171' => 'han', 'Haze_00916' => 'cav', 'Haze_05063' => 'cav', 'Haze_20814' => 'cav', 'Haze_24128' => 'cav', 'Hma1.2p1_0745F.1_g212010' => 'hma', 'Hma1.2p1_0757F.1_g213260' => 'hma', 'Hma1.2p1_0936F.1_g238840' => 'hma', 'Hma1.2p1_1735F.1_g299890' => 'hma', 'Hma1.2p1_1861F.1_g305685' => 'hma', 'HPP92_003397' => 'vpl', 'HPP92_012597' => 'vpl', 'HPP92_015520' => 'vpl', 'HPP92_015539' => 'vpl', 'HPP92_020373' => 'vpl', 'Hund04938' => 'sun', 'Hund10677' => 'sun', 'Hund11033' => 'sun', 'Hund12155' => 'sun', 'Lalb_Chr01g0022551' => 'lal', 'Lalb_Chr03g0042341' => 'lal', 'Lalb_Chr07g0192931' => 'lal', 'Lalb_Chr12g0209551' => 'lal', 'Lalb_Chr19g0125251' => 'lal', 'Lalb_Chr19g0137891' => 'lal', 'Lalb_Chr21g0304641' => 'lal', 'Lalb_Chr21g0309881' => 'lal', 'Lj1A5T12' => 'lonja', 'Lj1C148G10' => 'lonja', 'Lj2A93T83' => 'lonja', 'Lj3A738G68' => 'lonja', 'Lj3C966T1' => 'lonja', 'Lj3g0018958' => 'lja', 'Lj3g0021831' => 'lja', 'Lj3g0025443' => 'lja', 'Lj4g0026809' => 'lja', 'Lj5g0012558' => 'lja', 'Lj5g0021586' => 'lja', 'Lsat_1_v5_gn_5_156840' => 'lsa', 'Lsat_1_v5_gn_8_73460' => 'lsa', 'Lsat_1_v5_gn_8_73481' => 'lsa', 'Lsat_1_v5_gn_9_31601' => 'lsa', 'Lsat_1_v5_gn_9_77320' => 'lsa', 'Manes.01G171300' => 'mes', 'Manes.01G171400' => 'mes', 'Manes.01G236100' => 'mes', 'Manes.02G130500' => 'mes', 'Manes.02G130600' => 'mes', 'Manes.03G180200' => 'mes', 'Manes.05G007000' => 'mes', 'Manes.08G084400' => 'mes', 'Manes.09G092600' => 'mes', 'Manes.15G027900' => 'mes', 'MBI04_g40948_MAGBIO' => 'mbi', 'MBI14_g12123_MAGBIO' => 'mbi', 'MBI18_g28915_MAGBIO' => 'mbi', 'MCO09G053' => 'mco', 'MCO11G782' => 'mco', 'MCO15G215' => 'mco', 'MD03G1088500' => 'mdo', 'MD03G1088600' => 'mdo', 'MD04G1130800' => 'mdo', 'MD09G1291700' => 'mdo', 'MD11G1097500' => 'mdo', 'MD11G1097600' => 'mdo', 'MD12G1143900' => 'mdo', 'MD13G1191400' => 'mdo', 'MD16G1191500' => 'mdo', 'Medtr1g085570' => 'mtr', 'Medtr1g104610' => 'mtr', 'Medtr2g097520' => 'mtr', 'Medtr4g021800' => 'mtr', 'Medtr4g021825' => 'mtr', 'Medtr4g064270' => 'mtr', 'Medtr4g064380' => 'mtr', 'Medtr7g062150' => 'mtr', 'MELO3C003138.2' => 'cme', 'MELO3C005187.2' => 'cme', 'MELO3C009252.2' => 'cme', 'MELO3C014481.2' => 'cme', 'MELO3C020616.2' => 'cme', 'MELO3C020617.2' => 'cme', 'MELO3C020618.2' => 'cme', 'Migut.G00328' => 'egut', 'Migut.J00320' => 'egut', 'Migut.L01000' => 'egut', 'Migut.L01953' => 'egut', 'MSTRG.10253' => 'ama', 'MSTRG.19077' => 'ama', 'MSTRG.26780' => 'ama', 'MSTRG.4023' => 'ama', 'MSTRG.5655' => 'ama', 'MSTRG.9992' => 'ama', 'Nitab4.5_0000043g0310' => 'nta', 'Nitab4.5_0000463g0080' => 'nta', 'Nitab4.5_0000705g0170' => 'nta', 'Nitab4.5_0001326g0060' => 'nta', 'Nitab4.5_0001628g0030' => 'nta', 'Nitab4.5_0002103g0110' => 'nta', 'Nitab4.5_0002946g0030' => 'nta', 'Nitab4.5_0004639g0030' => 'nta', 'Nn2g11149' => 'nnu', 'Nn2g13389' => 'nnu', 'Nn4g25326' => 'nnu', 'Nn4g26290' => 'nnu', 'Nn5g29865' => 'nnu', 'Oeu004163.1' => 'oeu', 'Oeu006901.1' => 'oeu', 'Oeu010096.1' => 'oeu', 'Oeu024340.1' => 'oeu', 'Oeu048369.1' => 'oeu', 'Os01g0973000' => 'osa', 'Os03g0273800' => 'osa', 'Os03g0701200' => 'osa', 'Os03g0834050' => 'osa', 'Os07g0634400' => 'osa', 'Peaxi162Scf00092g01414' => 'pax', 'Peaxi162Scf00165g00818' => 'pax', 'Peaxi162Scf00309g00516' => 'pax', 'Peaxi162Scf00774g00218' => 'pax', 'PGR004G1824' => 'pgr', 'PGR004G2606' => 'pgr', 'PGR031G2716' => 'pgr', 'PGR102G2460' => 'pgr', 'PGR142G2599' => 'pgr', 'PGSC0003DMG400000843' => 'stu', 'PGSC0003DMG400008829' => 'stu', 'PGSC0003DMG400030418' => 'stu', 'PGSC0003DMG400031834' => 'stu', 'PGSC0003DMG401028300' => 'stu', 'PGSC0003DMG402028300' => 'stu', 'Phvul.001G219300' => 'pvu', 'Phvul.007G056000' => 'pvu', 'Phvul.007G208000' => 'pvu', 'Phvul.008G119500' => 'pvu', 'Phvul.010G011200' => 'pvu', 'Phvul.010G014800' => 'pvu', 'Phvul.011G062900' => 'pvu', 'Phvul.L007043' => 'pvu', 'Potri.001G242300' => 'ptr', 'Potri.002G185300' => 'ptr', 'Potri.006G086900' => 'ptr', 'Potri.008G151700' => 'ptr', 'Potri.009G033500' => 'ptr', 'Potri.010G089300' => 'ptr', 'Potri.014G110800' => 'ptr', 'Pp3c27_8130' => 'ppa', 'Pp3c6_27410' => 'ppa', 'PRCOL_00001659' => 'pco', 'PRCOL_00001927' => 'pco', 'PRCOL_00003649' => 'pco', 'Prupe.1G011600' => 'ppe', 'Prupe.3G000800' => 'ppe', 'Prupe.3G001100' => 'ppe', 'Prupe.6G072700' => 'ppe', 'Prupe.6G072800' => 'ppe', 'Prupe.6G257300' => 'ppe', 'Prupe.8G033000' => 'ppe', 'Psat0s2633g0080' => 'psa', 'Psat0s3396g0080' => 'psa', 'Psat0s3396g0200' => 'psa', 'Psat3g139080' => 'psa', 'Psat5g285080' => 'psa', 'Psat6g157760' => 'psa', 'Psat6g208440' => 'psa', 'Psat7g215320' => 'psa', 'Psat7g215400' => 'psa', 'Psat7g235600' => 'psa', 'Psat7g235760' => 'psa', 'PSO063G4603' => 'pso', 'PSO210G0182' => 'pso', 'PSO210G0196' => 'pso', 'PSO339G0394' => 'pso', 'PSO339G4127' => 'pso', 'PSO513G0064' => 'pso', 'PSO761G0079' => 'pso', 'QL01p031003' => 'qlo', 'QL01p031078' => 'qlo', 'QL06p003004' => 'qlo', 'QL07p048731' => 'qlo', 'QL09p037427' => 'qlo', 'RcHm_v2.0_Chr3g0466361' => 'rch', 'RcHm_v2.0_Chr3g0485571' => 'rch', 'RcHm_v2.0_Chr4g0416551' => 'rch', 'RcHm_v2.0_Chr5g0065831' => 'rch', 'Rhsim01G0230500' => 'rsi', 'Rhsim05G0194000' => 'rsi', 'Rhsim08G0250400' => 'rsi', 'Sabra02G0131000' => 'sbr', 'Sabra06G0066300' => 'sbr', 'Sabra08G0115500' => 'sbr', 'Sabra09G0023900' => 'sbr', 'Sabra10G0054000' => 'sbr', 'Sabra14G0081500' => 'sbr', 'Sabra16G0147100' => 'sbr', 'SalBow2G2957' => 'sbo', 'SalBow4G3320' => 'sbo', 'SalBow8G1894' => 'sbo', 'Sc07g0007950' => 'sci', 'Sc12g0001360' => 'sci', 'Sc13g0004330' => 'sci', 'Sc20g0005010' => 'sci', 'Sed0000361' => 'sed', 'Sed0001706' => 'sed', 'Sed0002422' => 'sed', 'Sed0004029' => 'sed', 'Sed0004602' => 'sed', 'Sed0004943' => 'sed', 'Sed0008646' => 'sed', 'Sed0023313' => 'sed', 'Sed0024843' => 'sed', 'SEGI_00081' => 'sgi', 'SEGI_00947' => 'sgi', 'SEGI_04046' => 'sgi', 'SEGI_06880' => 'sgi', 'SEGI_09736' => 'sgi', 'SEGI_12741' => 'sgi', 'SEGI_14530' => 'sgi', 'SEGI_20705' => 'sgi', 'SEGI_26088' => 'sgi', 'SEGI_28323' => 'sgi', 'SEGI_33343' => 'sgi', 'SGA_v2.0_scaffold126G33775' => 'sas', 'SGA_v2.0_scaffold2G01337' => 'sas', 'SGA_v2.0_scaffold38G15006' => 'sas', 'SGA_v2.0_scaffold39G15264' => 'sas', 'SGA_v2.0_scaffold453G51880' => 'sas', 'SHI12696' => 'shi', 'SMO367G1096' => 'smo', 'Solyc01g068630.3' => 'sly', 'Solyc05g011880.3' => 'sly', 'Solyc06g076300.3' => 'sly', 'Solyc09g010940.4' => 'sly', 'Solyc09g075890.3' => 'sly', 'Sopen01g030560' => 'spe', 'Sopen05g006630' => 'spe', 'Sopen06g032720' => 'spe', 'Sopen09g005660' => 'spe', 'Sopen09g030690' => 'spe', 'Sp4g14540' => 'spa', 'Sp4g20030' => 'spa', 'Sp5g01320' => 'spa', 'Sp6g21170' => 'spa', 'Sp6g21180' => 'spa', 'Sp6g21190' => 'spa', 'Sp6g40220' => 'spa', 'TAR362G0122' => 'tar', 'TAR362G1338' => 'tar', 'TAR369G0590' => 'tar', 'TAR371G0824' => 'tar', 'TAR622G1429' => 'tar', 'TAR623G0734' => 'tar', 'TAR625G0441' => 'tar', 'TAR629G0976' => 'tar', 'TAR633G1195' => 'tar', 'TAR636G2660' => 'tar', 'THA.LOC104799440' => 'tha', 'THA.LOC104800966' => 'tha', 'THA.LOC104806559' => 'tha', 'THA.LOC104810765' => 'tha', 'THA.LOC104816266' => 'tha', 'THA.LOC104817419' => 'tha', 'THA.LOC104827021' => 'tha', 'Thecc.01G327400' => 'tca', 'Thecc.04G229200' => 'tca', 'Thecc.05G037400' => 'tca', 'Thecc.09G318600' => 'tca', 'Thecc.09G318700' => 'tca', 'Thhalv10006238m.g' => 'esa', 'Thhalv10014321m.g' => 'esa', 'Thhalv10014335m.g' => 'esa', 'Thhalv10015826m.g' => 'esa', 'Thhalv10017107m.g' => 'esa', 'Thhalv10017180m.g' => 'esa', 'Thhalv10029339m.g' => 'esa', 'TPR.G1699' => 'tpr', 'TPR.G23609' => 'tpr', 'TPR.G3081' => 'tpr', 'TPR.G40397' => 'tpr', 'TPR.G5522' => 'tpr', 'TPR.G5618' => 'tpr', 'TPR.G5626' => 'tpr', 'TWI09G1632' => 'twi', 'TWI23G1230' => 'twi', 'TWI53G1064' => 'twi', 'TWI59G0751' => 'twi', 'TWI74G0947' => 'twi', 'TWI77G0337' => 'twi', 'TWI79G1254' => 'twi', 'unitig_0.g2341' => 'ugi', 'unitig_26.g10006' => 'ugi', 'unitig_26.g10008' => 'ugi', 'unitig_26.g9192' => 'ugi', 'vmacro14547' => 'vma', 'vmacro15333' => 'vma', 'vmacro18743' => 'vma', 'vmacro20166' => 'vma', 'VMungo0331G0523' => 'vmu', 'VMungo0331G1202' => 'vmu', 'VMungo0720G1228' => 'vmu', 'VMungo0720G1514' => 'vmu', 'VMungo1080G0169' => 'vmu', 'VMungo1127G1475' => 'vmu', 'VMungo1383G1208' => 'vmu', 'VMungo1383G1698' => 'vmu', 'Zm00001eb012270' => 'zma', 'Zm00001eb054100' => 'zma', 'Zm00001eb063350' => 'zma', 'Zm00001eb328560' => 'zma', 'Zm00001eb342820' => 'zma', 'Zm00001eb362210' => 'zma', 'Zm00001eb397730' => 'zma', 'Zm00001eb399750' => 'zma' ) $gf_id = 'HOM05D000959' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000959' ) $data_identifier = 'HOM05D000959' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 5, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 5, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 10, 'mbi' => (int) 3, 'mco' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 2, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 3, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 11, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399750' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000959', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '622', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p07100' => 'bna', 'A03p11720' => 'bna', 'A05p08300' => 'bna', 'A05p13380' => 'bna', 'A09p54130' => 'bna', 'A10p16690' => 'bna', 'A10p16700' => 'bna', 'A10p33390' => 'bna', 'Aa31LG10G16020' => 'aar', 'Aa31LG1G11810' => 'aar', 'Aa31LG1G11830' => 'aar', 'Aa31LG1G22510' => 'aar', 'Aa31LG5G4890' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5793' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2310' => 'aag', 'Actinidia08499' => 'ach', 'Actinidia11262' => 'ach', 'Actinidia23926' => 'ach', 'Actinidia34420' => 'ach', 'Actinidia36970' => 'ach', 'Ah.02g111220' => 'amhyb', 'Ah.15g097750' => 'amhyb', 'AL4G27500' => 'aly', 'AL6G11470' => 'aly', 'AL8G35950' => 'aly', 'AL8G35960' => 'aly', 'AL8G35970' => 'aly', 'Aqoxy1G00912' => 'aox', 'Aqoxy2G02253' => 'aox', 'Aqoxy2G02411' => 'aox', 'Aqoxy5G00485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BZ66YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K8ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM4FUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6BF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HFV7XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25JBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0YNNV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MAKK6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P70IT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP2Z6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V61LZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YWP64R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3S9AI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7PGHH' => 'arhy', 'AT2G32150' => 'ath', 'AT3G62040' => 'ath', 'AT5G02230' => 'ath', 'AT5G59480' => 'ath', 'AT5G59490' => 'ath', 'ATR0332G060' => 'atr', 'ATR0559G190' => 'atr', 'ATR0693G294' => 'atr', 'Atru.chr3.3975' => 'acertr', 'Atru.chr3.3976' => 'acertr', 'Atru.chr3.3977' => 'acertr', 'Atru.chr4.2498' => 'acertr', 'Atru.chr5.838' => 'acertr', 'Atru.chr8.1990' => 'acertr', 'Atru.chr8.1991' => 'acertr', 'Atru.chr8.1992' => 'acertr', 'AUR62001759' => 'cqu', 'AUR62009545' => 'cqu', 'AUR62010474' => 'cqu', 'AUR62025820' => 'cqu', 'AUR62030422' => 'cqu', 'AUR62033605' => 'cqu', 'AUR62038615' => 'cqu', 'AUR62041347' => 'cqu', 'BcaB01g04574' => 'bca', 'BcaB02g09263' => 'bca', 'BcaB02g10453' => 'bca', 'BcaB05g22513' => 'bca', 'BcaB08g36253' => 'bca', 'BcaB08g36254' => 'bca', 'BcaC01g06519' => 'bca', 'BcaC02g11889' => 'bca', 'BcaC03g14010' => 'bca', 'BcaC03g18439' => 'bca', 'BcaC04g19765' => 'bca', 'BcaC09g48432' => 'bca', 'BcaNung07302' => 'bca', 'BolC2t06040H' => 'bol', 'BolC2t07346H' => 'bol', 'BolC3t13817H' => 'bol', 'BolC4t22625H' => 'bol', 'BolC4t23297H' => 'bol', 'BolC8t51278H' => 'bol', 'BolC9t58050H' => 'bol', 'BolC9t58051H' => 'bol', 'BolC9t60163H' => 'bol', 'BraA02t04712Z' => 'bra', 'BraA02t05791Z' => 'bra', 'BraA03t10483Z' => 'bra', 'BraA05t19795Z' => 'bra', 'BraA05t20276Z' => 'bra', 'BraA09t40827Z' => 'bra', 'BraA10t43750Z' => 'bra', 'BraA10t43751Z' => 'bra', 'BraA10t45370Z' => 'bra', 'C02p00400' => 'bna', 'C02p12460' => 'bna', 'C03p13680' => 'bna', 'C04p10270' => 'bna', 'C04p17500' => 'bna', 'C08p37010' => 'bna', 'C09p51880' => 'bna', 'C09p51890' => 'bna', 'C09p74300' => 'bna', 'CAN.G179.26' => 'can', 'CAN.G3384.1' => 'can', 'CAN.G394.68' => 'can', 'CAN.G907.13' => 'can', 'CANSAT11G0012' => 'cansat', 'CANSAT25G1586' => 'cansat', 'CANSAT35G0735' => 'cansat', 'CANSAT54G0556' => 'cansat', 'CANSAT64G0356' => 'cansat', 'CANSAT78G2042' => 'cansat', 'CARHR125920' => 'chi', 'CARHR131910' => 'chi', 'CARHR172390' => 'chi', 'CARHR211140' => 'chi', 'CARHR285850' => 'chi', 'CARHR285860' => 'chi', 'Carub.0004s1347' => 'cru', 'Carub.0004s1960' => 'cru', 'Carub.0005s2880' => 'cru', 'Carub.0006s0107' => 'cru', 'Carub.0008s2015' => 'cru', 'Carub.0008s2016' => 'cru', 'Carub.0008s2017' => 'cru', 'Ca_01315_v3' => 'car', 'Ca_05063_v3' => 'car', 'Ca_10231_v3' => 'car', 'Ca_10913_v3' => 'car', 'Ca_19156_v3' => 'car', 'Ca_23644_v3' => 'car', 'Ca_26735_v3' => 'car', 'Cc01_g13130' => 'ccan', 'Cc02_g21690' => 'ccan', 'Cc03_g03600' => 'ccan', 'Cc06_g02510' => 'ccan', 'CDE02G1265' => 'cde', 'CDE05G0415' => 'cde', 'CDE08G1082' => 'cde', 'Cfa005780' => 'cfa', 'Cfa011522' => 'cfa', 'Cfa011523' => 'cfa', 'Cfa015627' => 'cfa', 'Cfa017359' => 'cfa', 'Ciclev10005687m.g' => 'ccl', 'Ciclev10012173m.g' => 'ccl', 'Ciclev10021621m.g' => 'ccl', 'Ciclev10028968m.g' => 'ccl', 'Ciclev10029907m.g' => 'ccl', 'CiPaw.01G164800' => 'cil', 'CiPaw.07G083700' => 'cil', 'CiPaw.07G127000' => 'cil', 'CiPaw.07G136900' => 'cil', 'CiPaw.08G081700' => 'cil', 'CiPaw.09G194600' => 'cil', 'CiPaw.10G146500' => 'cil', 'CiPaw.13G091500' => 'cil', 'CiPaw.13G091600' => 'cil', 'ClCG00G003390' => 'cla', 'ClCG01G007220' => 'cla', 'ClCG03G001370' => 'cla', 'ClCG04G008100' => 'cla', 'ClCG06G006110' => 'cla', 'ClCG06G006130' => 'cla', 'ClCG10G021210' => 'cla', 'COL.COLO4_07648' => 'col', 'COL.COLO4_07650' => 'col', 'COL.COLO4_07651' => 'col', 'COL.COLO4_14780' => 'col', 'COL.COLO4_18546' => 'col', 'COL.COLO4_18547' => 'col', 'COL.COLO4_23103' => 'col', 'COL.COLO4_30419' => 'col', 'COL.COLO4_34232' => 'col', 'Cpa.g.sc169.20' => 'cpa', 'Cpa.g.sc57.45' => 'cpa', 'Cpa.g.sc58.124' => 'cpa', 'Cpa.g.sc58.125' => 'cpa', 'Cpa.g.sc81.118' => 'cpa', 'Cpa.g.sc81.119' => 'cpa', 'Cre12.g524700' => 'cre', 'CsaV3_1G034430' => 'csa', 'CsaV3_1G034440' => 'csa', 'CsaV3_1G034450' => 'csa', 'CsaV3_3G034830' => 'csa', 'CsaV3_4G025090' => 'csa', 'CsaV3_5G018660' => 'csa', 'CsaV3_6G038160' => 'csa', 'CSS0003447' => 'camsi', 'CSS0017840' => 'camsi', 'CSS0019260' => 'camsi', 'CSS0040375' => 'camsi', 'CSS0042533' => 'camsi', 'DCAR_005960' => 'dca', 'DCAR_012104' => 'dca', 'DCAR_012105' => 'dca', 'DCAR_012293' => 'dca', 'DCAR_015632' => 'dca', 'DCAR_024602' => 'dca', 'DCAR_028752' => 'dca', 'Dinv06261' => 'din', 'Dinv13982' => 'din', 'Dinv17029' => 'din', 'Dinv18463' => 'din', 'Dinv33181' => 'din', 'Dinv35585' => 'din', 'Dinv37161' => 'din', 'Dinv42977' => 'din', 'Dinv43122' => 'din', 'Dinv44517' => 'din', 'Duzib093G0256' => 'dzi', 'Duzib106G1254' => 'dzi', 'Duzib128G1789' => 'dzi', 'Duzib133G0633' => 'dzi', 'Duzib138G0510' => 'dzi', 'Duzib150G1084' => 'dzi', 'Duzib168G0488' => 'dzi', 'Duzib168G1523' => 'dzi', 'Duzib170G0133' => 'dzi', 'ECA234G1433' => 'eca', 'ECA236G1432' => 'eca', 'ECA236G2256' => 'eca', 'ECA236G2365' => 'eca', 'ECA236G4830' => 'eca', 'ECA248G1505' => 'eca', 'EL10Ac3g06431' => 'bvu', 'EL10Ac5g12577' => 'bvu', 'EL10Ac6g13533' => 'bvu', 'EL10Ac7g16045' => 'bvu', 'Eucgr.A01281' => 'egr', 'Eucgr.B02326' => 'egr', 'Eucgr.H03532' => 'egr', 'Eucgr.K00553' => 'egr', 'Eucgr.K03116' => 'egr', 'FAN02G3963' => 'fan', 'FAN05G0438' => 'fan', 'FAN09G2434' => 'fan', 'FAN12G3984' => 'fan', 'FAN14G0798' => 'fan', 'FAN17G0652' => 'fan', 'FAN19G1988' => 'fan', 'FAN22G0632' => 'fan', 'FAN23G0387' => 'fan', 'FAN26G1323' => 'fan', 'FAN28G0666' => 'fan', 'FvH4_1g26080' => 'fve', 'FvH4_3g36780' => 'fve', 'FvH4_4g15270' => 'fve', 'FvH4_6g13490' => 'fve', 'Glyma.01G098700' => 'gma', 'Glyma.03G065900' => 'gma', 'Glyma.03G073754' => 'gma', 'Glyma.03G073758' => 'gma', 'Glyma.03G083200' => 'gma', 'Glyma.03G225500' => 'gma', 'Glyma.05G037766' => 'gma', 'Glyma.07G133500' => 'gma', 'Glyma.10G139400' => 'gma', 'Glyma.10G248900' => 'gma', 'Glyma.11G137800' => 'gma', 'Glyma.12G061300' => 'gma', 'Glyma.13G337900' => 'gma', 'Glyma.15G036600' => 'gma', 'Glyma.18G182800' => 'gma', 'Glyma.19G222500' => 'gma', 'Glyma.20G144800' => 'gma', 'Gohir.A01G222000' => 'ghi', 'Gohir.A03G044000' => 'ghi', 'Gohir.A03G044100' => 'ghi', 'Gohir.A04G083100' => 'ghi', 'Gohir.A07G127200' => 'ghi', 'Gohir.A07G132400' => 'ghi', 'Gohir.A08G000700' => 'ghi', 'Gohir.A11G327300' => 'ghi', 'Gohir.D01G211500' => 'ghi', 'Gohir.D03G123400' => 'ghi', 'Gohir.D03G123500' => 'ghi', 'Gohir.D04G121800' => 'ghi', 'Gohir.D07G131500' => 'ghi', 'Gohir.D07G136600' => 'ghi', 'Gohir.D08G011600' => 'ghi', 'Gohir.D11G346200' => 'ghi', 'Gorai.001G142800' => 'gra', 'Gorai.001G148700' => 'gra', 'Gorai.002G257300' => 'gra', 'Gorai.003G130000' => 'gra', 'Gorai.003G130100' => 'gra', 'Gorai.004G005300' => 'gra', 'Gorai.007G376500' => 'gra', 'Gorai.012G104700' => 'gra', 'GSVIVG01017946001' => 'vvi', 'GSVIVG01024928001' => 'vvi', 'GSVIVG01028227001' => 'vvi', 'GSVIVG01034151001' => 'vvi', 'HanXRQChr05g0135031' => 'han', 'HanXRQChr05g0135041' => 'han', 'HanXRQChr05g0140021' => 'han', 'HanXRQChr06g0178981' => 'han', 'HanXRQChr07g0188251' => 'han', 'HanXRQChr08g0235311' => 'han', 'HanXRQChr09g0271011' => 'han', 'HanXRQChr10g0293321' => 'han', 'HanXRQChr13g0388171' => 'han', 'Haze_00916' => 'cav', 'Haze_05063' => 'cav', 'Haze_20814' => 'cav', 'Haze_24128' => 'cav', 'Hma1.2p1_0745F.1_g212010' => 'hma', 'Hma1.2p1_0757F.1_g213260' => 'hma', 'Hma1.2p1_0936F.1_g238840' => 'hma', 'Hma1.2p1_1735F.1_g299890' => 'hma', 'Hma1.2p1_1861F.1_g305685' => 'hma', 'HPP92_003397' => 'vpl', 'HPP92_012597' => 'vpl', 'HPP92_015520' => 'vpl', 'HPP92_015539' => 'vpl', 'HPP92_020373' => 'vpl', 'Hund04938' => 'sun', 'Hund10677' => 'sun', 'Hund11033' => 'sun', 'Hund12155' => 'sun', 'Lalb_Chr01g0022551' => 'lal', 'Lalb_Chr03g0042341' => 'lal', 'Lalb_Chr07g0192931' => 'lal', 'Lalb_Chr12g0209551' => 'lal', 'Lalb_Chr19g0125251' => 'lal', 'Lalb_Chr19g0137891' => 'lal', 'Lalb_Chr21g0304641' => 'lal', 'Lalb_Chr21g0309881' => 'lal', 'Lj1A5T12' => 'lonja', 'Lj1C148G10' => 'lonja', 'Lj2A93T83' => 'lonja', 'Lj3A738G68' => 'lonja', 'Lj3C966T1' => 'lonja', 'Lj3g0018958' => 'lja', 'Lj3g0021831' => 'lja', 'Lj3g0025443' => 'lja', 'Lj4g0026809' => 'lja', 'Lj5g0012558' => 'lja', 'Lj5g0021586' => 'lja', 'Lsat_1_v5_gn_5_156840' => 'lsa', 'Lsat_1_v5_gn_8_73460' => 'lsa', 'Lsat_1_v5_gn_8_73481' => 'lsa', 'Lsat_1_v5_gn_9_31601' => 'lsa', 'Lsat_1_v5_gn_9_77320' => 'lsa', 'Manes.01G171300' => 'mes', 'Manes.01G171400' => 'mes', 'Manes.01G236100' => 'mes', 'Manes.02G130500' => 'mes', 'Manes.02G130600' => 'mes', 'Manes.03G180200' => 'mes', 'Manes.05G007000' => 'mes', 'Manes.08G084400' => 'mes', 'Manes.09G092600' => 'mes', 'Manes.15G027900' => 'mes', 'MBI04_g40948_MAGBIO' => 'mbi', 'MBI14_g12123_MAGBIO' => 'mbi', 'MBI18_g28915_MAGBIO' => 'mbi', 'MCO09G053' => 'mco', 'MCO11G782' => 'mco', 'MCO15G215' => 'mco', 'MD03G1088500' => 'mdo', 'MD03G1088600' => 'mdo', 'MD04G1130800' => 'mdo', 'MD09G1291700' => 'mdo', 'MD11G1097500' => 'mdo', 'MD11G1097600' => 'mdo', 'MD12G1143900' => 'mdo', 'MD13G1191400' => 'mdo', 'MD16G1191500' => 'mdo', 'Medtr1g085570' => 'mtr', 'Medtr1g104610' => 'mtr', 'Medtr2g097520' => 'mtr', 'Medtr4g021800' => 'mtr', 'Medtr4g021825' => 'mtr', 'Medtr4g064270' => 'mtr', 'Medtr4g064380' => 'mtr', 'Medtr7g062150' => 'mtr', 'MELO3C003138.2' => 'cme', 'MELO3C005187.2' => 'cme', 'MELO3C009252.2' => 'cme', 'MELO3C014481.2' => 'cme', 'MELO3C020616.2' => 'cme', 'MELO3C020617.2' => 'cme', 'MELO3C020618.2' => 'cme', 'Migut.G00328' => 'egut', 'Migut.J00320' => 'egut', 'Migut.L01000' => 'egut', 'Migut.L01953' => 'egut', 'MSTRG.10253' => 'ama', 'MSTRG.19077' => 'ama', 'MSTRG.26780' => 'ama', 'MSTRG.4023' => 'ama', 'MSTRG.5655' => 'ama', 'MSTRG.9992' => 'ama', 'Nitab4.5_0000043g0310' => 'nta', 'Nitab4.5_0000463g0080' => 'nta', 'Nitab4.5_0000705g0170' => 'nta', 'Nitab4.5_0001326g0060' => 'nta', 'Nitab4.5_0001628g0030' => 'nta', 'Nitab4.5_0002103g0110' => 'nta', 'Nitab4.5_0002946g0030' => 'nta', 'Nitab4.5_0004639g0030' => 'nta', 'Nn2g11149' => 'nnu', 'Nn2g13389' => 'nnu', 'Nn4g25326' => 'nnu', 'Nn4g26290' => 'nnu', 'Nn5g29865' => 'nnu', 'Oeu004163.1' => 'oeu', 'Oeu006901.1' => 'oeu', 'Oeu010096.1' => 'oeu', 'Oeu024340.1' => 'oeu', 'Oeu048369.1' => 'oeu', 'Os01g0973000' => 'osa', 'Os03g0273800' => 'osa', 'Os03g0701200' => 'osa', 'Os03g0834050' => 'osa', 'Os07g0634400' => 'osa', 'Peaxi162Scf00092g01414' => 'pax', 'Peaxi162Scf00165g00818' => 'pax', 'Peaxi162Scf00309g00516' => 'pax', 'Peaxi162Scf00774g00218' => 'pax', 'PGR004G1824' => 'pgr', 'PGR004G2606' => 'pgr', 'PGR031G2716' => 'pgr', 'PGR102G2460' => 'pgr', 'PGR142G2599' => 'pgr', 'PGSC0003DMG400000843' => 'stu', 'PGSC0003DMG400008829' => 'stu', 'PGSC0003DMG400030418' => 'stu', 'PGSC0003DMG400031834' => 'stu', 'PGSC0003DMG401028300' => 'stu', 'PGSC0003DMG402028300' => 'stu', 'Phvul.001G219300' => 'pvu', 'Phvul.007G056000' => 'pvu', 'Phvul.007G208000' => 'pvu', 'Phvul.008G119500' => 'pvu', 'Phvul.010G011200' => 'pvu', 'Phvul.010G014800' => 'pvu', 'Phvul.011G062900' => 'pvu', 'Phvul.L007043' => 'pvu', 'Potri.001G242300' => 'ptr', 'Potri.002G185300' => 'ptr', 'Potri.006G086900' => 'ptr', 'Potri.008G151700' => 'ptr', 'Potri.009G033500' => 'ptr', 'Potri.010G089300' => 'ptr', 'Potri.014G110800' => 'ptr', 'Pp3c27_8130' => 'ppa', 'Pp3c6_27410' => 'ppa', 'PRCOL_00001659' => 'pco', 'PRCOL_00001927' => 'pco', 'PRCOL_00003649' => 'pco', 'Prupe.1G011600' => 'ppe', 'Prupe.3G000800' => 'ppe', 'Prupe.3G001100' => 'ppe', 'Prupe.6G072700' => 'ppe', 'Prupe.6G072800' => 'ppe', 'Prupe.6G257300' => 'ppe', 'Prupe.8G033000' => 'ppe', 'Psat0s2633g0080' => 'psa', 'Psat0s3396g0080' => 'psa', 'Psat0s3396g0200' => 'psa', 'Psat3g139080' => 'psa', 'Psat5g285080' => 'psa', 'Psat6g157760' => 'psa', 'Psat6g208440' => 'psa', 'Psat7g215320' => 'psa', 'Psat7g215400' => 'psa', 'Psat7g235600' => 'psa', 'Psat7g235760' => 'psa', 'PSO063G4603' => 'pso', 'PSO210G0182' => 'pso', 'PSO210G0196' => 'pso', 'PSO339G0394' => 'pso', 'PSO339G4127' => 'pso', 'PSO513G0064' => 'pso', 'PSO761G0079' => 'pso', 'QL01p031003' => 'qlo', 'QL01p031078' => 'qlo', 'QL06p003004' => 'qlo', 'QL07p048731' => 'qlo', 'QL09p037427' => 'qlo', 'RcHm_v2.0_Chr3g0466361' => 'rch', 'RcHm_v2.0_Chr3g0485571' => 'rch', 'RcHm_v2.0_Chr4g0416551' => 'rch', 'RcHm_v2.0_Chr5g0065831' => 'rch', 'Rhsim01G0230500' => 'rsi', 'Rhsim05G0194000' => 'rsi', 'Rhsim08G0250400' => 'rsi', 'Sabra02G0131000' => 'sbr', 'Sabra06G0066300' => 'sbr', 'Sabra08G0115500' => 'sbr', 'Sabra09G0023900' => 'sbr', 'Sabra10G0054000' => 'sbr', 'Sabra14G0081500' => 'sbr', 'Sabra16G0147100' => 'sbr', 'SalBow2G2957' => 'sbo', 'SalBow4G3320' => 'sbo', 'SalBow8G1894' => 'sbo', 'Sc07g0007950' => 'sci', 'Sc12g0001360' => 'sci', 'Sc13g0004330' => 'sci', 'Sc20g0005010' => 'sci', 'Sed0000361' => 'sed', 'Sed0001706' => 'sed', 'Sed0002422' => 'sed', 'Sed0004029' => 'sed', 'Sed0004602' => 'sed', 'Sed0004943' => 'sed', 'Sed0008646' => 'sed', 'Sed0023313' => 'sed', 'Sed0024843' => 'sed', 'SEGI_00081' => 'sgi', 'SEGI_00947' => 'sgi', 'SEGI_04046' => 'sgi', 'SEGI_06880' => 'sgi', 'SEGI_09736' => 'sgi', 'SEGI_12741' => 'sgi', 'SEGI_14530' => 'sgi', 'SEGI_20705' => 'sgi', 'SEGI_26088' => 'sgi', 'SEGI_28323' => 'sgi', 'SEGI_33343' => 'sgi', 'SGA_v2.0_scaffold126G33775' => 'sas', 'SGA_v2.0_scaffold2G01337' => 'sas', 'SGA_v2.0_scaffold38G15006' => 'sas', 'SGA_v2.0_scaffold39G15264' => 'sas', 'SGA_v2.0_scaffold453G51880' => 'sas', 'SHI12696' => 'shi', 'SMO367G1096' => 'smo', 'Solyc01g068630.3' => 'sly', 'Solyc05g011880.3' => 'sly', 'Solyc06g076300.3' => 'sly', 'Solyc09g010940.4' => 'sly', 'Solyc09g075890.3' => 'sly', 'Sopen01g030560' => 'spe', 'Sopen05g006630' => 'spe', 'Sopen06g032720' => 'spe', 'Sopen09g005660' => 'spe', 'Sopen09g030690' => 'spe', 'Sp4g14540' => 'spa', 'Sp4g20030' => 'spa', 'Sp5g01320' => 'spa', 'Sp6g21170' => 'spa', 'Sp6g21180' => 'spa', 'Sp6g21190' => 'spa', 'Sp6g40220' => 'spa', 'TAR362G0122' => 'tar', 'TAR362G1338' => 'tar', 'TAR369G0590' => 'tar', 'TAR371G0824' => 'tar', 'TAR622G1429' => 'tar', 'TAR623G0734' => 'tar', 'TAR625G0441' => 'tar', 'TAR629G0976' => 'tar', 'TAR633G1195' => 'tar', 'TAR636G2660' => 'tar', 'THA.LOC104799440' => 'tha', 'THA.LOC104800966' => 'tha', 'THA.LOC104806559' => 'tha', 'THA.LOC104810765' => 'tha', 'THA.LOC104816266' => 'tha', 'THA.LOC104817419' => 'tha', 'THA.LOC104827021' => 'tha', 'Thecc.01G327400' => 'tca', 'Thecc.04G229200' => 'tca', 'Thecc.05G037400' => 'tca', 'Thecc.09G318600' => 'tca', 'Thecc.09G318700' => 'tca', 'Thhalv10006238m.g' => 'esa', 'Thhalv10014321m.g' => 'esa', 'Thhalv10014335m.g' => 'esa', 'Thhalv10015826m.g' => 'esa', 'Thhalv10017107m.g' => 'esa', 'Thhalv10017180m.g' => 'esa', 'Thhalv10029339m.g' => 'esa', 'TPR.G1699' => 'tpr', 'TPR.G23609' => 'tpr', 'TPR.G3081' => 'tpr', 'TPR.G40397' => 'tpr', 'TPR.G5522' => 'tpr', 'TPR.G5618' => 'tpr', 'TPR.G5626' => 'tpr', 'TWI09G1632' => 'twi', 'TWI23G1230' => 'twi', 'TWI53G1064' => 'twi', 'TWI59G0751' => 'twi', 'TWI74G0947' => 'twi', 'TWI77G0337' => 'twi', 'TWI79G1254' => 'twi', 'unitig_0.g2341' => 'ugi', 'unitig_26.g10006' => 'ugi', 'unitig_26.g10008' => 'ugi', 'unitig_26.g9192' => 'ugi', 'vmacro14547' => 'vma', 'vmacro15333' => 'vma', 'vmacro18743' => 'vma', 'vmacro20166' => 'vma', 'VMungo0331G0523' => 'vmu', 'VMungo0331G1202' => 'vmu', 'VMungo0720G1228' => 'vmu', 'VMungo0720G1514' => 'vmu', 'VMungo1080G0169' => 'vmu', 'VMungo1127G1475' => 'vmu', 'VMungo1383G1208' => 'vmu', 'VMungo1383G1698' => 'vmu', 'Zm00001eb012270' => 'zma', 'Zm00001eb054100' => 'zma', 'Zm00001eb063350' => 'zma', 'Zm00001eb328560' => 'zma', 'Zm00001eb342820' => 'zma', 'Zm00001eb362210' => 'zma', 'Zm00001eb397730' => 'zma', 'Zm00001eb399750' => 'zma' ), 'gf_id' => 'HOM05D000959', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000959' ), 'data_identifier' => 'HOM05D000959', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000959', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '622', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p07100' => 'bna', 'A03p11720' => 'bna', 'A05p08300' => 'bna', 'A05p13380' => 'bna', 'A09p54130' => 'bna', 'A10p16690' => 'bna', 'A10p16700' => 'bna', 'A10p33390' => 'bna', 'Aa31LG10G16020' => 'aar', 'Aa31LG1G11810' => 'aar', 'Aa31LG1G11830' => 'aar', 'Aa31LG1G22510' => 'aar', 'Aa31LG5G4890' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5793' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2310' => 'aag', 'Actinidia08499' => 'ach', 'Actinidia11262' => 'ach', 'Actinidia23926' => 'ach', 'Actinidia34420' => 'ach', 'Actinidia36970' => 'ach', 'Ah.02g111220' => 'amhyb', 'Ah.15g097750' => 'amhyb', 'AL4G27500' => 'aly', 'AL6G11470' => 'aly', 'AL8G35950' => 'aly', 'AL8G35960' => 'aly', 'AL8G35970' => 'aly', 'Aqoxy1G00912' => 'aox', 'Aqoxy2G02253' => 'aox', 'Aqoxy2G02411' => 'aox', 'Aqoxy5G00485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BZ66YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K8ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM4FUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6BF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HFV7XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25JBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0YNNV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MAKK6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P70IT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP2Z6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V61LZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YWP64R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3S9AI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7PGHH' => 'arhy', 'AT2G32150' => 'ath', 'AT3G62040' => 'ath', 'AT5G02230' => 'ath', 'AT5G59480' => 'ath', 'AT5G59490' => 'ath', 'ATR0332G060' => 'atr', 'ATR0559G190' => 'atr', 'ATR0693G294' => 'atr', 'Atru.chr3.3975' => 'acertr', 'Atru.chr3.3976' => 'acertr', 'Atru.chr3.3977' => 'acertr', 'Atru.chr4.2498' => 'acertr', 'Atru.chr5.838' => 'acertr', 'Atru.chr8.1990' => 'acertr', 'Atru.chr8.1991' => 'acertr', 'Atru.chr8.1992' => 'acertr', 'AUR62001759' => 'cqu', 'AUR62009545' => 'cqu', 'AUR62010474' => 'cqu', 'AUR62025820' => 'cqu', 'AUR62030422' => 'cqu', 'AUR62033605' => 'cqu', 'AUR62038615' => 'cqu', 'AUR62041347' => 'cqu', 'BcaB01g04574' => 'bca', 'BcaB02g09263' => 'bca', 'BcaB02g10453' => 'bca', 'BcaB05g22513' => 'bca', 'BcaB08g36253' => 'bca', 'BcaB08g36254' => 'bca', 'BcaC01g06519' => 'bca', 'BcaC02g11889' => 'bca', 'BcaC03g14010' => 'bca', 'BcaC03g18439' => 'bca', 'BcaC04g19765' => 'bca', 'BcaC09g48432' => 'bca', 'BcaNung07302' => 'bca', 'BolC2t06040H' => 'bol', 'BolC2t07346H' => 'bol', 'BolC3t13817H' => 'bol', 'BolC4t22625H' => 'bol', 'BolC4t23297H' => 'bol', 'BolC8t51278H' => 'bol', 'BolC9t58050H' => 'bol', 'BolC9t58051H' => 'bol', 'BolC9t60163H' => 'bol', 'BraA02t04712Z' => 'bra', 'BraA02t05791Z' => 'bra', 'BraA03t10483Z' => 'bra', 'BraA05t19795Z' => 'bra', 'BraA05t20276Z' => 'bra', 'BraA09t40827Z' => 'bra', 'BraA10t43750Z' => 'bra', 'BraA10t43751Z' => 'bra', 'BraA10t45370Z' => 'bra', 'C02p00400' => 'bna', 'C02p12460' => 'bna', 'C03p13680' => 'bna', 'C04p10270' => 'bna', 'C04p17500' => 'bna', 'C08p37010' => 'bna', 'C09p51880' => 'bna', 'C09p51890' => 'bna', 'C09p74300' => 'bna', 'CAN.G179.26' => 'can', 'CAN.G3384.1' => 'can', 'CAN.G394.68' => 'can', 'CAN.G907.13' => 'can', 'CANSAT11G0012' => 'cansat', 'CANSAT25G1586' => 'cansat', 'CANSAT35G0735' => 'cansat', 'CANSAT54G0556' => 'cansat', 'CANSAT64G0356' => 'cansat', 'CANSAT78G2042' => 'cansat', 'CARHR125920' => 'chi', 'CARHR131910' => 'chi', 'CARHR172390' => 'chi', 'CARHR211140' => 'chi', 'CARHR285850' => 'chi', 'CARHR285860' => 'chi', 'Carub.0004s1347' => 'cru', 'Carub.0004s1960' => 'cru', 'Carub.0005s2880' => 'cru', 'Carub.0006s0107' => 'cru', 'Carub.0008s2015' => 'cru', 'Carub.0008s2016' => 'cru', 'Carub.0008s2017' => 'cru', 'Ca_01315_v3' => 'car', 'Ca_05063_v3' => 'car', 'Ca_10231_v3' => 'car', 'Ca_10913_v3' => 'car', 'Ca_19156_v3' => 'car', 'Ca_23644_v3' => 'car', 'Ca_26735_v3' => 'car', 'Cc01_g13130' => 'ccan', 'Cc02_g21690' => 'ccan', 'Cc03_g03600' => 'ccan', 'Cc06_g02510' => 'ccan', 'CDE02G1265' => 'cde', 'CDE05G0415' => 'cde', 'CDE08G1082' => 'cde', 'Cfa005780' => 'cfa', 'Cfa011522' => 'cfa', 'Cfa011523' => 'cfa', 'Cfa015627' => 'cfa', 'Cfa017359' => 'cfa', 'Ciclev10005687m.g' => 'ccl', 'Ciclev10012173m.g' => 'ccl', 'Ciclev10021621m.g' => 'ccl', 'Ciclev10028968m.g' => 'ccl', 'Ciclev10029907m.g' => 'ccl', 'CiPaw.01G164800' => 'cil', 'CiPaw.07G083700' => 'cil', 'CiPaw.07G127000' => 'cil', 'CiPaw.07G136900' => 'cil', 'CiPaw.08G081700' => 'cil', 'CiPaw.09G194600' => 'cil', 'CiPaw.10G146500' => 'cil', 'CiPaw.13G091500' => 'cil', 'CiPaw.13G091600' => 'cil', 'ClCG00G003390' => 'cla', 'ClCG01G007220' => 'cla', 'ClCG03G001370' => 'cla', 'ClCG04G008100' => 'cla', 'ClCG06G006110' => 'cla', 'ClCG06G006130' => 'cla', 'ClCG10G021210' => 'cla', 'COL.COLO4_07648' => 'col', 'COL.COLO4_07650' => 'col', 'COL.COLO4_07651' => 'col', 'COL.COLO4_14780' => 'col', 'COL.COLO4_18546' => 'col', 'COL.COLO4_18547' => 'col', 'COL.COLO4_23103' => 'col', 'COL.COLO4_30419' => 'col', 'COL.COLO4_34232' => 'col', 'Cpa.g.sc169.20' => 'cpa', 'Cpa.g.sc57.45' => 'cpa', 'Cpa.g.sc58.124' => 'cpa', 'Cpa.g.sc58.125' => 'cpa', 'Cpa.g.sc81.118' => 'cpa', 'Cpa.g.sc81.119' => 'cpa', 'Cre12.g524700' => 'cre', 'CsaV3_1G034430' => 'csa', 'CsaV3_1G034440' => 'csa', 'CsaV3_1G034450' => 'csa', 'CsaV3_3G034830' => 'csa', 'CsaV3_4G025090' => 'csa', 'CsaV3_5G018660' => 'csa', 'CsaV3_6G038160' => 'csa', 'CSS0003447' => 'camsi', 'CSS0017840' => 'camsi', 'CSS0019260' => 'camsi', 'CSS0040375' => 'camsi', 'CSS0042533' => 'camsi', 'DCAR_005960' => 'dca', 'DCAR_012104' => 'dca', 'DCAR_012105' => 'dca', 'DCAR_012293' => 'dca', 'DCAR_015632' => 'dca', 'DCAR_024602' => 'dca', 'DCAR_028752' => 'dca', 'Dinv06261' => 'din', 'Dinv13982' => 'din', 'Dinv17029' => 'din', 'Dinv18463' => 'din', 'Dinv33181' => 'din', 'Dinv35585' => 'din', 'Dinv37161' => 'din', 'Dinv42977' => 'din', 'Dinv43122' => 'din', 'Dinv44517' => 'din', 'Duzib093G0256' => 'dzi', 'Duzib106G1254' => 'dzi', 'Duzib128G1789' => 'dzi', 'Duzib133G0633' => 'dzi', 'Duzib138G0510' => 'dzi', 'Duzib150G1084' => 'dzi', 'Duzib168G0488' => 'dzi', 'Duzib168G1523' => 'dzi', 'Duzib170G0133' => 'dzi', 'ECA234G1433' => 'eca', 'ECA236G1432' => 'eca', 'ECA236G2256' => 'eca', 'ECA236G2365' => 'eca', 'ECA236G4830' => 'eca', 'ECA248G1505' => 'eca', 'EL10Ac3g06431' => 'bvu', 'EL10Ac5g12577' => 'bvu', 'EL10Ac6g13533' => 'bvu', 'EL10Ac7g16045' => 'bvu', 'Eucgr.A01281' => 'egr', 'Eucgr.B02326' => 'egr', 'Eucgr.H03532' => 'egr', 'Eucgr.K00553' => 'egr', 'Eucgr.K03116' => 'egr', 'FAN02G3963' => 'fan', 'FAN05G0438' => 'fan', 'FAN09G2434' => 'fan', 'FAN12G3984' => 'fan', 'FAN14G0798' => 'fan', 'FAN17G0652' => 'fan', 'FAN19G1988' => 'fan', 'FAN22G0632' => 'fan', 'FAN23G0387' => 'fan', 'FAN26G1323' => 'fan', 'FAN28G0666' => 'fan', 'FvH4_1g26080' => 'fve', 'FvH4_3g36780' => 'fve', 'FvH4_4g15270' => 'fve', 'FvH4_6g13490' => 'fve', 'Glyma.01G098700' => 'gma', 'Glyma.03G065900' => 'gma', 'Glyma.03G073754' => 'gma', 'Glyma.03G073758' => 'gma', 'Glyma.03G083200' => 'gma', 'Glyma.03G225500' => 'gma', 'Glyma.05G037766' => 'gma', 'Glyma.07G133500' => 'gma', 'Glyma.10G139400' => 'gma', 'Glyma.10G248900' => 'gma', 'Glyma.11G137800' => 'gma', 'Glyma.12G061300' => 'gma', 'Glyma.13G337900' => 'gma', 'Glyma.15G036600' => 'gma', 'Glyma.18G182800' => 'gma', 'Glyma.19G222500' => 'gma', 'Glyma.20G144800' => 'gma', 'Gohir.A01G222000' => 'ghi', 'Gohir.A03G044000' => 'ghi', 'Gohir.A03G044100' => 'ghi', 'Gohir.A04G083100' => 'ghi', 'Gohir.A07G127200' => 'ghi', 'Gohir.A07G132400' => 'ghi', 'Gohir.A08G000700' => 'ghi', 'Gohir.A11G327300' => 'ghi', 'Gohir.D01G211500' => 'ghi', 'Gohir.D03G123400' => 'ghi', 'Gohir.D03G123500' => 'ghi', 'Gohir.D04G121800' => 'ghi', 'Gohir.D07G131500' => 'ghi', 'Gohir.D07G136600' => 'ghi', 'Gohir.D08G011600' => 'ghi', 'Gohir.D11G346200' => 'ghi', 'Gorai.001G142800' => 'gra', 'Gorai.001G148700' => 'gra', 'Gorai.002G257300' => 'gra', 'Gorai.003G130000' => 'gra', 'Gorai.003G130100' => 'gra', 'Gorai.004G005300' => 'gra', 'Gorai.007G376500' => 'gra', 'Gorai.012G104700' => 'gra', 'GSVIVG01017946001' => 'vvi', 'GSVIVG01024928001' => 'vvi', 'GSVIVG01028227001' => 'vvi', 'GSVIVG01034151001' => 'vvi', 'HanXRQChr05g0135031' => 'han', 'HanXRQChr05g0135041' => 'han', 'HanXRQChr05g0140021' => 'han', 'HanXRQChr06g0178981' => 'han', 'HanXRQChr07g0188251' => 'han', 'HanXRQChr08g0235311' => 'han', 'HanXRQChr09g0271011' => 'han', 'HanXRQChr10g0293321' => 'han', 'HanXRQChr13g0388171' => 'han', 'Haze_00916' => 'cav', 'Haze_05063' => 'cav', 'Haze_20814' => 'cav', 'Haze_24128' => 'cav', 'Hma1.2p1_0745F.1_g212010' => 'hma', 'Hma1.2p1_0757F.1_g213260' => 'hma', 'Hma1.2p1_0936F.1_g238840' => 'hma', 'Hma1.2p1_1735F.1_g299890' => 'hma', 'Hma1.2p1_1861F.1_g305685' => 'hma', 'HPP92_003397' => 'vpl', 'HPP92_012597' => 'vpl', 'HPP92_015520' => 'vpl', 'HPP92_015539' => 'vpl', 'HPP92_020373' => 'vpl', 'Hund04938' => 'sun', 'Hund10677' => 'sun', 'Hund11033' => 'sun', 'Hund12155' => 'sun', 'Lalb_Chr01g0022551' => 'lal', 'Lalb_Chr03g0042341' => 'lal', 'Lalb_Chr07g0192931' => 'lal', 'Lalb_Chr12g0209551' => 'lal', 'Lalb_Chr19g0125251' => 'lal', 'Lalb_Chr19g0137891' => 'lal', 'Lalb_Chr21g0304641' => 'lal', 'Lalb_Chr21g0309881' => 'lal', 'Lj1A5T12' => 'lonja', 'Lj1C148G10' => 'lonja', 'Lj2A93T83' => 'lonja', 'Lj3A738G68' => 'lonja', 'Lj3C966T1' => 'lonja', 'Lj3g0018958' => 'lja', 'Lj3g0021831' => 'lja', 'Lj3g0025443' => 'lja', 'Lj4g0026809' => 'lja', 'Lj5g0012558' => 'lja', 'Lj5g0021586' => 'lja', 'Lsat_1_v5_gn_5_156840' => 'lsa', 'Lsat_1_v5_gn_8_73460' => 'lsa', 'Lsat_1_v5_gn_8_73481' => 'lsa', 'Lsat_1_v5_gn_9_31601' => 'lsa', 'Lsat_1_v5_gn_9_77320' => 'lsa', 'Manes.01G171300' => 'mes', 'Manes.01G171400' => 'mes', 'Manes.01G236100' => 'mes', 'Manes.02G130500' => 'mes', 'Manes.02G130600' => 'mes', 'Manes.03G180200' => 'mes', 'Manes.05G007000' => 'mes', 'Manes.08G084400' => 'mes', 'Manes.09G092600' => 'mes', 'Manes.15G027900' => 'mes', 'MBI04_g40948_MAGBIO' => 'mbi', 'MBI14_g12123_MAGBIO' => 'mbi', 'MBI18_g28915_MAGBIO' => 'mbi', 'MCO09G053' => 'mco', 'MCO11G782' => 'mco', 'MCO15G215' => 'mco', 'MD03G1088500' => 'mdo', 'MD03G1088600' => 'mdo', 'MD04G1130800' => 'mdo', 'MD09G1291700' => 'mdo', 'MD11G1097500' => 'mdo', 'MD11G1097600' => 'mdo', 'MD12G1143900' => 'mdo', 'MD13G1191400' => 'mdo', 'MD16G1191500' => 'mdo', 'Medtr1g085570' => 'mtr', 'Medtr1g104610' => 'mtr', 'Medtr2g097520' => 'mtr', 'Medtr4g021800' => 'mtr', 'Medtr4g021825' => 'mtr', 'Medtr4g064270' => 'mtr', 'Medtr4g064380' => 'mtr', 'Medtr7g062150' => 'mtr', 'MELO3C003138.2' => 'cme', 'MELO3C005187.2' => 'cme', 'MELO3C009252.2' => 'cme', 'MELO3C014481.2' => 'cme', 'MELO3C020616.2' => 'cme', 'MELO3C020617.2' => 'cme', 'MELO3C020618.2' => 'cme', 'Migut.G00328' => 'egut', 'Migut.J00320' => 'egut', 'Migut.L01000' => 'egut', 'Migut.L01953' => 'egut', 'MSTRG.10253' => 'ama', 'MSTRG.19077' => 'ama', 'MSTRG.26780' => 'ama', 'MSTRG.4023' => 'ama', 'MSTRG.5655' => 'ama', 'MSTRG.9992' => 'ama', 'Nitab4.5_0000043g0310' => 'nta', 'Nitab4.5_0000463g0080' => 'nta', 'Nitab4.5_0000705g0170' => 'nta', 'Nitab4.5_0001326g0060' => 'nta', 'Nitab4.5_0001628g0030' => 'nta', 'Nitab4.5_0002103g0110' => 'nta', 'Nitab4.5_0002946g0030' => 'nta', 'Nitab4.5_0004639g0030' => 'nta', 'Nn2g11149' => 'nnu', 'Nn2g13389' => 'nnu', 'Nn4g25326' => 'nnu', 'Nn4g26290' => 'nnu', 'Nn5g29865' => 'nnu', 'Oeu004163.1' => 'oeu', 'Oeu006901.1' => 'oeu', 'Oeu010096.1' => 'oeu', 'Oeu024340.1' => 'oeu', 'Oeu048369.1' => 'oeu', 'Os01g0973000' => 'osa', 'Os03g0273800' => 'osa', 'Os03g0701200' => 'osa', 'Os03g0834050' => 'osa', 'Os07g0634400' => 'osa', 'Peaxi162Scf00092g01414' => 'pax', 'Peaxi162Scf00165g00818' => 'pax', 'Peaxi162Scf00309g00516' => 'pax', 'Peaxi162Scf00774g00218' => 'pax', 'PGR004G1824' => 'pgr', 'PGR004G2606' => 'pgr', 'PGR031G2716' => 'pgr', 'PGR102G2460' => 'pgr', 'PGR142G2599' => 'pgr', 'PGSC0003DMG400000843' => 'stu', 'PGSC0003DMG400008829' => 'stu', 'PGSC0003DMG400030418' => 'stu', 'PGSC0003DMG400031834' => 'stu', 'PGSC0003DMG401028300' => 'stu', 'PGSC0003DMG402028300' => 'stu', 'Phvul.001G219300' => 'pvu', 'Phvul.007G056000' => 'pvu', 'Phvul.007G208000' => 'pvu', 'Phvul.008G119500' => 'pvu', 'Phvul.010G011200' => 'pvu', 'Phvul.010G014800' => 'pvu', 'Phvul.011G062900' => 'pvu', 'Phvul.L007043' => 'pvu', 'Potri.001G242300' => 'ptr', 'Potri.002G185300' => 'ptr', 'Potri.006G086900' => 'ptr', 'Potri.008G151700' => 'ptr', 'Potri.009G033500' => 'ptr', 'Potri.010G089300' => 'ptr', 'Potri.014G110800' => 'ptr', 'Pp3c27_8130' => 'ppa', 'Pp3c6_27410' => 'ppa', 'PRCOL_00001659' => 'pco', 'PRCOL_00001927' => 'pco', 'PRCOL_00003649' => 'pco', 'Prupe.1G011600' => 'ppe', 'Prupe.3G000800' => 'ppe', 'Prupe.3G001100' => 'ppe', 'Prupe.6G072700' => 'ppe', 'Prupe.6G072800' => 'ppe', 'Prupe.6G257300' => 'ppe', 'Prupe.8G033000' => 'ppe', 'Psat0s2633g0080' => 'psa', 'Psat0s3396g0080' => 'psa', 'Psat0s3396g0200' => 'psa', 'Psat3g139080' => 'psa', 'Psat5g285080' => 'psa', 'Psat6g157760' => 'psa', 'Psat6g208440' => 'psa', 'Psat7g215320' => 'psa', 'Psat7g215400' => 'psa', 'Psat7g235600' => 'psa', 'Psat7g235760' => 'psa', 'PSO063G4603' => 'pso', 'PSO210G0182' => 'pso', 'PSO210G0196' => 'pso', 'PSO339G0394' => 'pso', 'PSO339G4127' => 'pso', 'PSO513G0064' => 'pso', 'PSO761G0079' => 'pso', 'QL01p031003' => 'qlo', 'QL01p031078' => 'qlo', 'QL06p003004' => 'qlo', 'QL07p048731' => 'qlo', 'QL09p037427' => 'qlo', 'RcHm_v2.0_Chr3g0466361' => 'rch', 'RcHm_v2.0_Chr3g0485571' => 'rch', 'RcHm_v2.0_Chr4g0416551' => 'rch', 'RcHm_v2.0_Chr5g0065831' => 'rch', 'Rhsim01G0230500' => 'rsi', 'Rhsim05G0194000' => 'rsi', 'Rhsim08G0250400' => 'rsi', 'Sabra02G0131000' => 'sbr', 'Sabra06G0066300' => 'sbr', 'Sabra08G0115500' => 'sbr', 'Sabra09G0023900' => 'sbr', 'Sabra10G0054000' => 'sbr', 'Sabra14G0081500' => 'sbr', 'Sabra16G0147100' => 'sbr', 'SalBow2G2957' => 'sbo', 'SalBow4G3320' => 'sbo', 'SalBow8G1894' => 'sbo', 'Sc07g0007950' => 'sci', 'Sc12g0001360' => 'sci', 'Sc13g0004330' => 'sci', 'Sc20g0005010' => 'sci', 'Sed0000361' => 'sed', 'Sed0001706' => 'sed', 'Sed0002422' => 'sed', 'Sed0004029' => 'sed', 'Sed0004602' => 'sed', 'Sed0004943' => 'sed', 'Sed0008646' => 'sed', 'Sed0023313' => 'sed', 'Sed0024843' => 'sed', 'SEGI_00081' => 'sgi', 'SEGI_00947' => 'sgi', 'SEGI_04046' => 'sgi', 'SEGI_06880' => 'sgi', 'SEGI_09736' => 'sgi', 'SEGI_12741' => 'sgi', 'SEGI_14530' => 'sgi', 'SEGI_20705' => 'sgi', 'SEGI_26088' => 'sgi', 'SEGI_28323' => 'sgi', 'SEGI_33343' => 'sgi', 'SGA_v2.0_scaffold126G33775' => 'sas', 'SGA_v2.0_scaffold2G01337' => 'sas', 'SGA_v2.0_scaffold38G15006' => 'sas', 'SGA_v2.0_scaffold39G15264' => 'sas', 'SGA_v2.0_scaffold453G51880' => 'sas', 'SHI12696' => 'shi', 'SMO367G1096' => 'smo', 'Solyc01g068630.3' => 'sly', 'Solyc05g011880.3' => 'sly', 'Solyc06g076300.3' => 'sly', 'Solyc09g010940.4' => 'sly', 'Solyc09g075890.3' => 'sly', 'Sopen01g030560' => 'spe', 'Sopen05g006630' => 'spe', 'Sopen06g032720' => 'spe', 'Sopen09g005660' => 'spe', 'Sopen09g030690' => 'spe', 'Sp4g14540' => 'spa', 'Sp4g20030' => 'spa', 'Sp5g01320' => 'spa', 'Sp6g21170' => 'spa', 'Sp6g21180' => 'spa', 'Sp6g21190' => 'spa', 'Sp6g40220' => 'spa', 'TAR362G0122' => 'tar', 'TAR362G1338' => 'tar', 'TAR369G0590' => 'tar', 'TAR371G0824' => 'tar', 'TAR622G1429' => 'tar', 'TAR623G0734' => 'tar', 'TAR625G0441' => 'tar', 'TAR629G0976' => 'tar', 'TAR633G1195' => 'tar', 'TAR636G2660' => 'tar', 'THA.LOC104799440' => 'tha', 'THA.LOC104800966' => 'tha', 'THA.LOC104806559' => 'tha', 'THA.LOC104810765' => 'tha', 'THA.LOC104816266' => 'tha', 'THA.LOC104817419' => 'tha', 'THA.LOC104827021' => 'tha', 'Thecc.01G327400' => 'tca', 'Thecc.04G229200' => 'tca', 'Thecc.05G037400' => 'tca', 'Thecc.09G318600' => 'tca', 'Thecc.09G318700' => 'tca', 'Thhalv10006238m.g' => 'esa', 'Thhalv10014321m.g' => 'esa', 'Thhalv10014335m.g' => 'esa', 'Thhalv10015826m.g' => 'esa', 'Thhalv10017107m.g' => 'esa', 'Thhalv10017180m.g' => 'esa', 'Thhalv10029339m.g' => 'esa', 'TPR.G1699' => 'tpr', 'TPR.G23609' => 'tpr', 'TPR.G3081' => 'tpr', 'TPR.G40397' => 'tpr', 'TPR.G5522' => 'tpr', 'TPR.G5618' => 'tpr', 'TPR.G5626' => 'tpr', 'TWI09G1632' => 'twi', 'TWI23G1230' => 'twi', 'TWI53G1064' => 'twi', 'TWI59G0751' => 'twi', 'TWI74G0947' => 'twi', 'TWI77G0337' => 'twi', 'TWI79G1254' => 'twi', 'unitig_0.g2341' => 'ugi', 'unitig_26.g10006' => 'ugi', 'unitig_26.g10008' => 'ugi', 'unitig_26.g9192' => 'ugi', 'vmacro14547' => 'vma', 'vmacro15333' => 'vma', 'vmacro18743' => 'vma', 'vmacro20166' => 'vma', 'VMungo0331G0523' => 'vmu', 'VMungo0331G1202' => 'vmu', 'VMungo0720G1228' => 'vmu', 'VMungo0720G1514' => 'vmu', 'VMungo1080G0169' => 'vmu', 'VMungo1127G1475' => 'vmu', 'VMungo1383G1208' => 'vmu', 'VMungo1383G1698' => 'vmu', 'Zm00001eb012270' => 'zma', 'Zm00001eb054100' => 'zma', 'Zm00001eb063350' => 'zma', 'Zm00001eb328560' => 'zma', 'Zm00001eb342820' => 'zma', 'Zm00001eb362210' => 'zma', 'Zm00001eb397730' => 'zma', 'Zm00001eb399750' => 'zma' ) $gf_id = 'HOM05D000959' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000959' ) $data_identifier = 'HOM05D000959' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 5, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 5, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 10, 'mbi' => (int) 3, 'mco' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 2, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 3, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 11, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399750' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000959', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '622', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p07100' => 'bna', 'A03p11720' => 'bna', 'A05p08300' => 'bna', 'A05p13380' => 'bna', 'A09p54130' => 'bna', 'A10p16690' => 'bna', 'A10p16700' => 'bna', 'A10p33390' => 'bna', 'Aa31LG10G16020' => 'aar', 'Aa31LG1G11810' => 'aar', 'Aa31LG1G11830' => 'aar', 'Aa31LG1G22510' => 'aar', 'Aa31LG5G4890' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5793' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2310' => 'aag', 'Actinidia08499' => 'ach', 'Actinidia11262' => 'ach', 'Actinidia23926' => 'ach', 'Actinidia34420' => 'ach', 'Actinidia36970' => 'ach', 'Ah.02g111220' => 'amhyb', 'Ah.15g097750' => 'amhyb', 'AL4G27500' => 'aly', 'AL6G11470' => 'aly', 'AL8G35950' => 'aly', 'AL8G35960' => 'aly', 'AL8G35970' => 'aly', 'Aqoxy1G00912' => 'aox', 'Aqoxy2G02253' => 'aox', 'Aqoxy2G02411' => 'aox', 'Aqoxy5G00485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BZ66YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K8ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM4FUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6BF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HFV7XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25JBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0YNNV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MAKK6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P70IT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP2Z6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V61LZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YWP64R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3S9AI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7PGHH' => 'arhy', 'AT2G32150' => 'ath', 'AT3G62040' => 'ath', 'AT5G02230' => 'ath', 'AT5G59480' => 'ath', 'AT5G59490' => 'ath', 'ATR0332G060' => 'atr', 'ATR0559G190' => 'atr', 'ATR0693G294' => 'atr', 'Atru.chr3.3975' => 'acertr', 'Atru.chr3.3976' => 'acertr', 'Atru.chr3.3977' => 'acertr', 'Atru.chr4.2498' => 'acertr', 'Atru.chr5.838' => 'acertr', 'Atru.chr8.1990' => 'acertr', 'Atru.chr8.1991' => 'acertr', 'Atru.chr8.1992' => 'acertr', 'AUR62001759' => 'cqu', 'AUR62009545' => 'cqu', 'AUR62010474' => 'cqu', 'AUR62025820' => 'cqu', 'AUR62030422' => 'cqu', 'AUR62033605' => 'cqu', 'AUR62038615' => 'cqu', 'AUR62041347' => 'cqu', 'BcaB01g04574' => 'bca', 'BcaB02g09263' => 'bca', 'BcaB02g10453' => 'bca', 'BcaB05g22513' => 'bca', 'BcaB08g36253' => 'bca', 'BcaB08g36254' => 'bca', 'BcaC01g06519' => 'bca', 'BcaC02g11889' => 'bca', 'BcaC03g14010' => 'bca', 'BcaC03g18439' => 'bca', 'BcaC04g19765' => 'bca', 'BcaC09g48432' => 'bca', 'BcaNung07302' => 'bca', 'BolC2t06040H' => 'bol', 'BolC2t07346H' => 'bol', 'BolC3t13817H' => 'bol', 'BolC4t22625H' => 'bol', 'BolC4t23297H' => 'bol', 'BolC8t51278H' => 'bol', 'BolC9t58050H' => 'bol', 'BolC9t58051H' => 'bol', 'BolC9t60163H' => 'bol', 'BraA02t04712Z' => 'bra', 'BraA02t05791Z' => 'bra', 'BraA03t10483Z' => 'bra', 'BraA05t19795Z' => 'bra', 'BraA05t20276Z' => 'bra', 'BraA09t40827Z' => 'bra', 'BraA10t43750Z' => 'bra', 'BraA10t43751Z' => 'bra', 'BraA10t45370Z' => 'bra', 'C02p00400' => 'bna', 'C02p12460' => 'bna', 'C03p13680' => 'bna', 'C04p10270' => 'bna', 'C04p17500' => 'bna', 'C08p37010' => 'bna', 'C09p51880' => 'bna', 'C09p51890' => 'bna', 'C09p74300' => 'bna', 'CAN.G179.26' => 'can', 'CAN.G3384.1' => 'can', 'CAN.G394.68' => 'can', 'CAN.G907.13' => 'can', 'CANSAT11G0012' => 'cansat', 'CANSAT25G1586' => 'cansat', 'CANSAT35G0735' => 'cansat', 'CANSAT54G0556' => 'cansat', 'CANSAT64G0356' => 'cansat', 'CANSAT78G2042' => 'cansat', 'CARHR125920' => 'chi', 'CARHR131910' => 'chi', 'CARHR172390' => 'chi', 'CARHR211140' => 'chi', 'CARHR285850' => 'chi', 'CARHR285860' => 'chi', 'Carub.0004s1347' => 'cru', 'Carub.0004s1960' => 'cru', 'Carub.0005s2880' => 'cru', 'Carub.0006s0107' => 'cru', 'Carub.0008s2015' => 'cru', 'Carub.0008s2016' => 'cru', 'Carub.0008s2017' => 'cru', 'Ca_01315_v3' => 'car', 'Ca_05063_v3' => 'car', 'Ca_10231_v3' => 'car', 'Ca_10913_v3' => 'car', 'Ca_19156_v3' => 'car', 'Ca_23644_v3' => 'car', 'Ca_26735_v3' => 'car', 'Cc01_g13130' => 'ccan', 'Cc02_g21690' => 'ccan', 'Cc03_g03600' => 'ccan', 'Cc06_g02510' => 'ccan', 'CDE02G1265' => 'cde', 'CDE05G0415' => 'cde', 'CDE08G1082' => 'cde', 'Cfa005780' => 'cfa', 'Cfa011522' => 'cfa', 'Cfa011523' => 'cfa', 'Cfa015627' => 'cfa', 'Cfa017359' => 'cfa', 'Ciclev10005687m.g' => 'ccl', 'Ciclev10012173m.g' => 'ccl', 'Ciclev10021621m.g' => 'ccl', 'Ciclev10028968m.g' => 'ccl', 'Ciclev10029907m.g' => 'ccl', 'CiPaw.01G164800' => 'cil', 'CiPaw.07G083700' => 'cil', 'CiPaw.07G127000' => 'cil', 'CiPaw.07G136900' => 'cil', 'CiPaw.08G081700' => 'cil', 'CiPaw.09G194600' => 'cil', 'CiPaw.10G146500' => 'cil', 'CiPaw.13G091500' => 'cil', 'CiPaw.13G091600' => 'cil', 'ClCG00G003390' => 'cla', 'ClCG01G007220' => 'cla', 'ClCG03G001370' => 'cla', 'ClCG04G008100' => 'cla', 'ClCG06G006110' => 'cla', 'ClCG06G006130' => 'cla', 'ClCG10G021210' => 'cla', 'COL.COLO4_07648' => 'col', 'COL.COLO4_07650' => 'col', 'COL.COLO4_07651' => 'col', 'COL.COLO4_14780' => 'col', 'COL.COLO4_18546' => 'col', 'COL.COLO4_18547' => 'col', 'COL.COLO4_23103' => 'col', 'COL.COLO4_30419' => 'col', 'COL.COLO4_34232' => 'col', 'Cpa.g.sc169.20' => 'cpa', 'Cpa.g.sc57.45' => 'cpa', 'Cpa.g.sc58.124' => 'cpa', 'Cpa.g.sc58.125' => 'cpa', 'Cpa.g.sc81.118' => 'cpa', 'Cpa.g.sc81.119' => 'cpa', 'Cre12.g524700' => 'cre', 'CsaV3_1G034430' => 'csa', 'CsaV3_1G034440' => 'csa', 'CsaV3_1G034450' => 'csa', 'CsaV3_3G034830' => 'csa', 'CsaV3_4G025090' => 'csa', 'CsaV3_5G018660' => 'csa', 'CsaV3_6G038160' => 'csa', 'CSS0003447' => 'camsi', 'CSS0017840' => 'camsi', 'CSS0019260' => 'camsi', 'CSS0040375' => 'camsi', 'CSS0042533' => 'camsi', 'DCAR_005960' => 'dca', 'DCAR_012104' => 'dca', 'DCAR_012105' => 'dca', 'DCAR_012293' => 'dca', 'DCAR_015632' => 'dca', 'DCAR_024602' => 'dca', 'DCAR_028752' => 'dca', 'Dinv06261' => 'din', 'Dinv13982' => 'din', 'Dinv17029' => 'din', 'Dinv18463' => 'din', 'Dinv33181' => 'din', 'Dinv35585' => 'din', 'Dinv37161' => 'din', 'Dinv42977' => 'din', 'Dinv43122' => 'din', 'Dinv44517' => 'din', 'Duzib093G0256' => 'dzi', 'Duzib106G1254' => 'dzi', 'Duzib128G1789' => 'dzi', 'Duzib133G0633' => 'dzi', 'Duzib138G0510' => 'dzi', 'Duzib150G1084' => 'dzi', 'Duzib168G0488' => 'dzi', 'Duzib168G1523' => 'dzi', 'Duzib170G0133' => 'dzi', 'ECA234G1433' => 'eca', 'ECA236G1432' => 'eca', 'ECA236G2256' => 'eca', 'ECA236G2365' => 'eca', 'ECA236G4830' => 'eca', 'ECA248G1505' => 'eca', 'EL10Ac3g06431' => 'bvu', 'EL10Ac5g12577' => 'bvu', 'EL10Ac6g13533' => 'bvu', 'EL10Ac7g16045' => 'bvu', 'Eucgr.A01281' => 'egr', 'Eucgr.B02326' => 'egr', 'Eucgr.H03532' => 'egr', 'Eucgr.K00553' => 'egr', 'Eucgr.K03116' => 'egr', 'FAN02G3963' => 'fan', 'FAN05G0438' => 'fan', 'FAN09G2434' => 'fan', 'FAN12G3984' => 'fan', 'FAN14G0798' => 'fan', 'FAN17G0652' => 'fan', 'FAN19G1988' => 'fan', 'FAN22G0632' => 'fan', 'FAN23G0387' => 'fan', 'FAN26G1323' => 'fan', 'FAN28G0666' => 'fan', 'FvH4_1g26080' => 'fve', 'FvH4_3g36780' => 'fve', 'FvH4_4g15270' => 'fve', 'FvH4_6g13490' => 'fve', 'Glyma.01G098700' => 'gma', 'Glyma.03G065900' => 'gma', 'Glyma.03G073754' => 'gma', 'Glyma.03G073758' => 'gma', 'Glyma.03G083200' => 'gma', 'Glyma.03G225500' => 'gma', 'Glyma.05G037766' => 'gma', 'Glyma.07G133500' => 'gma', 'Glyma.10G139400' => 'gma', 'Glyma.10G248900' => 'gma', 'Glyma.11G137800' => 'gma', 'Glyma.12G061300' => 'gma', 'Glyma.13G337900' => 'gma', 'Glyma.15G036600' => 'gma', 'Glyma.18G182800' => 'gma', 'Glyma.19G222500' => 'gma', 'Glyma.20G144800' => 'gma', 'Gohir.A01G222000' => 'ghi', 'Gohir.A03G044000' => 'ghi', 'Gohir.A03G044100' => 'ghi', 'Gohir.A04G083100' => 'ghi', 'Gohir.A07G127200' => 'ghi', 'Gohir.A07G132400' => 'ghi', 'Gohir.A08G000700' => 'ghi', 'Gohir.A11G327300' => 'ghi', 'Gohir.D01G211500' => 'ghi', 'Gohir.D03G123400' => 'ghi', 'Gohir.D03G123500' => 'ghi', 'Gohir.D04G121800' => 'ghi', 'Gohir.D07G131500' => 'ghi', 'Gohir.D07G136600' => 'ghi', 'Gohir.D08G011600' => 'ghi', 'Gohir.D11G346200' => 'ghi', 'Gorai.001G142800' => 'gra', 'Gorai.001G148700' => 'gra', 'Gorai.002G257300' => 'gra', 'Gorai.003G130000' => 'gra', 'Gorai.003G130100' => 'gra', 'Gorai.004G005300' => 'gra', 'Gorai.007G376500' => 'gra', 'Gorai.012G104700' => 'gra', 'GSVIVG01017946001' => 'vvi', 'GSVIVG01024928001' => 'vvi', 'GSVIVG01028227001' => 'vvi', 'GSVIVG01034151001' => 'vvi', 'HanXRQChr05g0135031' => 'han', 'HanXRQChr05g0135041' => 'han', 'HanXRQChr05g0140021' => 'han', 'HanXRQChr06g0178981' => 'han', 'HanXRQChr07g0188251' => 'han', 'HanXRQChr08g0235311' => 'han', 'HanXRQChr09g0271011' => 'han', 'HanXRQChr10g0293321' => 'han', 'HanXRQChr13g0388171' => 'han', 'Haze_00916' => 'cav', 'Haze_05063' => 'cav', 'Haze_20814' => 'cav', 'Haze_24128' => 'cav', 'Hma1.2p1_0745F.1_g212010' => 'hma', 'Hma1.2p1_0757F.1_g213260' => 'hma', 'Hma1.2p1_0936F.1_g238840' => 'hma', 'Hma1.2p1_1735F.1_g299890' => 'hma', 'Hma1.2p1_1861F.1_g305685' => 'hma', 'HPP92_003397' => 'vpl', 'HPP92_012597' => 'vpl', 'HPP92_015520' => 'vpl', 'HPP92_015539' => 'vpl', 'HPP92_020373' => 'vpl', 'Hund04938' => 'sun', 'Hund10677' => 'sun', 'Hund11033' => 'sun', 'Hund12155' => 'sun', 'Lalb_Chr01g0022551' => 'lal', 'Lalb_Chr03g0042341' => 'lal', 'Lalb_Chr07g0192931' => 'lal', 'Lalb_Chr12g0209551' => 'lal', 'Lalb_Chr19g0125251' => 'lal', 'Lalb_Chr19g0137891' => 'lal', 'Lalb_Chr21g0304641' => 'lal', 'Lalb_Chr21g0309881' => 'lal', 'Lj1A5T12' => 'lonja', 'Lj1C148G10' => 'lonja', 'Lj2A93T83' => 'lonja', 'Lj3A738G68' => 'lonja', 'Lj3C966T1' => 'lonja', 'Lj3g0018958' => 'lja', 'Lj3g0021831' => 'lja', 'Lj3g0025443' => 'lja', 'Lj4g0026809' => 'lja', 'Lj5g0012558' => 'lja', 'Lj5g0021586' => 'lja', 'Lsat_1_v5_gn_5_156840' => 'lsa', 'Lsat_1_v5_gn_8_73460' => 'lsa', 'Lsat_1_v5_gn_8_73481' => 'lsa', 'Lsat_1_v5_gn_9_31601' => 'lsa', 'Lsat_1_v5_gn_9_77320' => 'lsa', 'Manes.01G171300' => 'mes', 'Manes.01G171400' => 'mes', 'Manes.01G236100' => 'mes', 'Manes.02G130500' => 'mes', 'Manes.02G130600' => 'mes', 'Manes.03G180200' => 'mes', 'Manes.05G007000' => 'mes', 'Manes.08G084400' => 'mes', 'Manes.09G092600' => 'mes', 'Manes.15G027900' => 'mes', 'MBI04_g40948_MAGBIO' => 'mbi', 'MBI14_g12123_MAGBIO' => 'mbi', 'MBI18_g28915_MAGBIO' => 'mbi', 'MCO09G053' => 'mco', 'MCO11G782' => 'mco', 'MCO15G215' => 'mco', 'MD03G1088500' => 'mdo', 'MD03G1088600' => 'mdo', 'MD04G1130800' => 'mdo', 'MD09G1291700' => 'mdo', 'MD11G1097500' => 'mdo', 'MD11G1097600' => 'mdo', 'MD12G1143900' => 'mdo', 'MD13G1191400' => 'mdo', 'MD16G1191500' => 'mdo', 'Medtr1g085570' => 'mtr', 'Medtr1g104610' => 'mtr', 'Medtr2g097520' => 'mtr', 'Medtr4g021800' => 'mtr', 'Medtr4g021825' => 'mtr', 'Medtr4g064270' => 'mtr', 'Medtr4g064380' => 'mtr', 'Medtr7g062150' => 'mtr', 'MELO3C003138.2' => 'cme', 'MELO3C005187.2' => 'cme', 'MELO3C009252.2' => 'cme', 'MELO3C014481.2' => 'cme', 'MELO3C020616.2' => 'cme', 'MELO3C020617.2' => 'cme', 'MELO3C020618.2' => 'cme', 'Migut.G00328' => 'egut', 'Migut.J00320' => 'egut', 'Migut.L01000' => 'egut', 'Migut.L01953' => 'egut', 'MSTRG.10253' => 'ama', 'MSTRG.19077' => 'ama', 'MSTRG.26780' => 'ama', 'MSTRG.4023' => 'ama', 'MSTRG.5655' => 'ama', 'MSTRG.9992' => 'ama', 'Nitab4.5_0000043g0310' => 'nta', 'Nitab4.5_0000463g0080' => 'nta', 'Nitab4.5_0000705g0170' => 'nta', 'Nitab4.5_0001326g0060' => 'nta', 'Nitab4.5_0001628g0030' => 'nta', 'Nitab4.5_0002103g0110' => 'nta', 'Nitab4.5_0002946g0030' => 'nta', 'Nitab4.5_0004639g0030' => 'nta', 'Nn2g11149' => 'nnu', 'Nn2g13389' => 'nnu', 'Nn4g25326' => 'nnu', 'Nn4g26290' => 'nnu', 'Nn5g29865' => 'nnu', 'Oeu004163.1' => 'oeu', 'Oeu006901.1' => 'oeu', 'Oeu010096.1' => 'oeu', 'Oeu024340.1' => 'oeu', 'Oeu048369.1' => 'oeu', 'Os01g0973000' => 'osa', 'Os03g0273800' => 'osa', 'Os03g0701200' => 'osa', 'Os03g0834050' => 'osa', 'Os07g0634400' => 'osa', 'Peaxi162Scf00092g01414' => 'pax', 'Peaxi162Scf00165g00818' => 'pax', 'Peaxi162Scf00309g00516' => 'pax', 'Peaxi162Scf00774g00218' => 'pax', 'PGR004G1824' => 'pgr', 'PGR004G2606' => 'pgr', 'PGR031G2716' => 'pgr', 'PGR102G2460' => 'pgr', 'PGR142G2599' => 'pgr', 'PGSC0003DMG400000843' => 'stu', 'PGSC0003DMG400008829' => 'stu', 'PGSC0003DMG400030418' => 'stu', 'PGSC0003DMG400031834' => 'stu', 'PGSC0003DMG401028300' => 'stu', 'PGSC0003DMG402028300' => 'stu', 'Phvul.001G219300' => 'pvu', 'Phvul.007G056000' => 'pvu', 'Phvul.007G208000' => 'pvu', 'Phvul.008G119500' => 'pvu', 'Phvul.010G011200' => 'pvu', 'Phvul.010G014800' => 'pvu', 'Phvul.011G062900' => 'pvu', 'Phvul.L007043' => 'pvu', 'Potri.001G242300' => 'ptr', 'Potri.002G185300' => 'ptr', 'Potri.006G086900' => 'ptr', 'Potri.008G151700' => 'ptr', 'Potri.009G033500' => 'ptr', 'Potri.010G089300' => 'ptr', 'Potri.014G110800' => 'ptr', 'Pp3c27_8130' => 'ppa', 'Pp3c6_27410' => 'ppa', 'PRCOL_00001659' => 'pco', 'PRCOL_00001927' => 'pco', 'PRCOL_00003649' => 'pco', 'Prupe.1G011600' => 'ppe', 'Prupe.3G000800' => 'ppe', 'Prupe.3G001100' => 'ppe', 'Prupe.6G072700' => 'ppe', 'Prupe.6G072800' => 'ppe', 'Prupe.6G257300' => 'ppe', 'Prupe.8G033000' => 'ppe', 'Psat0s2633g0080' => 'psa', 'Psat0s3396g0080' => 'psa', 'Psat0s3396g0200' => 'psa', 'Psat3g139080' => 'psa', 'Psat5g285080' => 'psa', 'Psat6g157760' => 'psa', 'Psat6g208440' => 'psa', 'Psat7g215320' => 'psa', 'Psat7g215400' => 'psa', 'Psat7g235600' => 'psa', 'Psat7g235760' => 'psa', 'PSO063G4603' => 'pso', 'PSO210G0182' => 'pso', 'PSO210G0196' => 'pso', 'PSO339G0394' => 'pso', 'PSO339G4127' => 'pso', 'PSO513G0064' => 'pso', 'PSO761G0079' => 'pso', 'QL01p031003' => 'qlo', 'QL01p031078' => 'qlo', 'QL06p003004' => 'qlo', 'QL07p048731' => 'qlo', 'QL09p037427' => 'qlo', 'RcHm_v2.0_Chr3g0466361' => 'rch', 'RcHm_v2.0_Chr3g0485571' => 'rch', 'RcHm_v2.0_Chr4g0416551' => 'rch', 'RcHm_v2.0_Chr5g0065831' => 'rch', 'Rhsim01G0230500' => 'rsi', 'Rhsim05G0194000' => 'rsi', 'Rhsim08G0250400' => 'rsi', 'Sabra02G0131000' => 'sbr', 'Sabra06G0066300' => 'sbr', 'Sabra08G0115500' => 'sbr', 'Sabra09G0023900' => 'sbr', 'Sabra10G0054000' => 'sbr', 'Sabra14G0081500' => 'sbr', 'Sabra16G0147100' => 'sbr', 'SalBow2G2957' => 'sbo', 'SalBow4G3320' => 'sbo', 'SalBow8G1894' => 'sbo', 'Sc07g0007950' => 'sci', 'Sc12g0001360' => 'sci', 'Sc13g0004330' => 'sci', 'Sc20g0005010' => 'sci', 'Sed0000361' => 'sed', 'Sed0001706' => 'sed', 'Sed0002422' => 'sed', 'Sed0004029' => 'sed', 'Sed0004602' => 'sed', 'Sed0004943' => 'sed', 'Sed0008646' => 'sed', 'Sed0023313' => 'sed', 'Sed0024843' => 'sed', 'SEGI_00081' => 'sgi', 'SEGI_00947' => 'sgi', 'SEGI_04046' => 'sgi', 'SEGI_06880' => 'sgi', 'SEGI_09736' => 'sgi', 'SEGI_12741' => 'sgi', 'SEGI_14530' => 'sgi', 'SEGI_20705' => 'sgi', 'SEGI_26088' => 'sgi', 'SEGI_28323' => 'sgi', 'SEGI_33343' => 'sgi', 'SGA_v2.0_scaffold126G33775' => 'sas', 'SGA_v2.0_scaffold2G01337' => 'sas', 'SGA_v2.0_scaffold38G15006' => 'sas', 'SGA_v2.0_scaffold39G15264' => 'sas', 'SGA_v2.0_scaffold453G51880' => 'sas', 'SHI12696' => 'shi', 'SMO367G1096' => 'smo', 'Solyc01g068630.3' => 'sly', 'Solyc05g011880.3' => 'sly', 'Solyc06g076300.3' => 'sly', 'Solyc09g010940.4' => 'sly', 'Solyc09g075890.3' => 'sly', 'Sopen01g030560' => 'spe', 'Sopen05g006630' => 'spe', 'Sopen06g032720' => 'spe', 'Sopen09g005660' => 'spe', 'Sopen09g030690' => 'spe', 'Sp4g14540' => 'spa', 'Sp4g20030' => 'spa', 'Sp5g01320' => 'spa', 'Sp6g21170' => 'spa', 'Sp6g21180' => 'spa', 'Sp6g21190' => 'spa', 'Sp6g40220' => 'spa', 'TAR362G0122' => 'tar', 'TAR362G1338' => 'tar', 'TAR369G0590' => 'tar', 'TAR371G0824' => 'tar', 'TAR622G1429' => 'tar', 'TAR623G0734' => 'tar', 'TAR625G0441' => 'tar', 'TAR629G0976' => 'tar', 'TAR633G1195' => 'tar', 'TAR636G2660' => 'tar', 'THA.LOC104799440' => 'tha', 'THA.LOC104800966' => 'tha', 'THA.LOC104806559' => 'tha', 'THA.LOC104810765' => 'tha', 'THA.LOC104816266' => 'tha', 'THA.LOC104817419' => 'tha', 'THA.LOC104827021' => 'tha', 'Thecc.01G327400' => 'tca', 'Thecc.04G229200' => 'tca', 'Thecc.05G037400' => 'tca', 'Thecc.09G318600' => 'tca', 'Thecc.09G318700' => 'tca', 'Thhalv10006238m.g' => 'esa', 'Thhalv10014321m.g' => 'esa', 'Thhalv10014335m.g' => 'esa', 'Thhalv10015826m.g' => 'esa', 'Thhalv10017107m.g' => 'esa', 'Thhalv10017180m.g' => 'esa', 'Thhalv10029339m.g' => 'esa', 'TPR.G1699' => 'tpr', 'TPR.G23609' => 'tpr', 'TPR.G3081' => 'tpr', 'TPR.G40397' => 'tpr', 'TPR.G5522' => 'tpr', 'TPR.G5618' => 'tpr', 'TPR.G5626' => 'tpr', 'TWI09G1632' => 'twi', 'TWI23G1230' => 'twi', 'TWI53G1064' => 'twi', 'TWI59G0751' => 'twi', 'TWI74G0947' => 'twi', 'TWI77G0337' => 'twi', 'TWI79G1254' => 'twi', 'unitig_0.g2341' => 'ugi', 'unitig_26.g10006' => 'ugi', 'unitig_26.g10008' => 'ugi', 'unitig_26.g9192' => 'ugi', 'vmacro14547' => 'vma', 'vmacro15333' => 'vma', 'vmacro18743' => 'vma', 'vmacro20166' => 'vma', 'VMungo0331G0523' => 'vmu', 'VMungo0331G1202' => 'vmu', 'VMungo0720G1228' => 'vmu', 'VMungo0720G1514' => 'vmu', 'VMungo1080G0169' => 'vmu', 'VMungo1127G1475' => 'vmu', 'VMungo1383G1208' => 'vmu', 'VMungo1383G1698' => 'vmu', 'Zm00001eb012270' => 'zma', 'Zm00001eb054100' => 'zma', 'Zm00001eb063350' => 'zma', 'Zm00001eb328560' => 'zma', 'Zm00001eb342820' => 'zma', 'Zm00001eb362210' => 'zma', 'Zm00001eb397730' => 'zma', 'Zm00001eb399750' => 'zma' ), 'gf_id' => 'HOM05D000959', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000959' ), 'data_identifier' => 'HOM05D000959', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000959', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '622', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p07100' => 'bna', 'A03p11720' => 'bna', 'A05p08300' => 'bna', 'A05p13380' => 'bna', 'A09p54130' => 'bna', 'A10p16690' => 'bna', 'A10p16700' => 'bna', 'A10p33390' => 'bna', 'Aa31LG10G16020' => 'aar', 'Aa31LG1G11810' => 'aar', 'Aa31LG1G11830' => 'aar', 'Aa31LG1G22510' => 'aar', 'Aa31LG5G4890' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5793' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2310' => 'aag', 'Actinidia08499' => 'ach', 'Actinidia11262' => 'ach', 'Actinidia23926' => 'ach', 'Actinidia34420' => 'ach', 'Actinidia36970' => 'ach', 'Ah.02g111220' => 'amhyb', 'Ah.15g097750' => 'amhyb', 'AL4G27500' => 'aly', 'AL6G11470' => 'aly', 'AL8G35950' => 'aly', 'AL8G35960' => 'aly', 'AL8G35970' => 'aly', 'Aqoxy1G00912' => 'aox', 'Aqoxy2G02253' => 'aox', 'Aqoxy2G02411' => 'aox', 'Aqoxy5G00485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BZ66YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K8ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM4FUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6BF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HFV7XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25JBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0YNNV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MAKK6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P70IT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP2Z6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V61LZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YWP64R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3S9AI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7PGHH' => 'arhy', 'AT2G32150' => 'ath', 'AT3G62040' => 'ath', 'AT5G02230' => 'ath', 'AT5G59480' => 'ath', 'AT5G59490' => 'ath', 'ATR0332G060' => 'atr', 'ATR0559G190' => 'atr', 'ATR0693G294' => 'atr', 'Atru.chr3.3975' => 'acertr', 'Atru.chr3.3976' => 'acertr', 'Atru.chr3.3977' => 'acertr', 'Atru.chr4.2498' => 'acertr', 'Atru.chr5.838' => 'acertr', 'Atru.chr8.1990' => 'acertr', 'Atru.chr8.1991' => 'acertr', 'Atru.chr8.1992' => 'acertr', 'AUR62001759' => 'cqu', 'AUR62009545' => 'cqu', 'AUR62010474' => 'cqu', 'AUR62025820' => 'cqu', 'AUR62030422' => 'cqu', 'AUR62033605' => 'cqu', 'AUR62038615' => 'cqu', 'AUR62041347' => 'cqu', 'BcaB01g04574' => 'bca', 'BcaB02g09263' => 'bca', 'BcaB02g10453' => 'bca', 'BcaB05g22513' => 'bca', 'BcaB08g36253' => 'bca', 'BcaB08g36254' => 'bca', 'BcaC01g06519' => 'bca', 'BcaC02g11889' => 'bca', 'BcaC03g14010' => 'bca', 'BcaC03g18439' => 'bca', 'BcaC04g19765' => 'bca', 'BcaC09g48432' => 'bca', 'BcaNung07302' => 'bca', 'BolC2t06040H' => 'bol', 'BolC2t07346H' => 'bol', 'BolC3t13817H' => 'bol', 'BolC4t22625H' => 'bol', 'BolC4t23297H' => 'bol', 'BolC8t51278H' => 'bol', 'BolC9t58050H' => 'bol', 'BolC9t58051H' => 'bol', 'BolC9t60163H' => 'bol', 'BraA02t04712Z' => 'bra', 'BraA02t05791Z' => 'bra', 'BraA03t10483Z' => 'bra', 'BraA05t19795Z' => 'bra', 'BraA05t20276Z' => 'bra', 'BraA09t40827Z' => 'bra', 'BraA10t43750Z' => 'bra', 'BraA10t43751Z' => 'bra', 'BraA10t45370Z' => 'bra', 'C02p00400' => 'bna', 'C02p12460' => 'bna', 'C03p13680' => 'bna', 'C04p10270' => 'bna', 'C04p17500' => 'bna', 'C08p37010' => 'bna', 'C09p51880' => 'bna', 'C09p51890' => 'bna', 'C09p74300' => 'bna', 'CAN.G179.26' => 'can', 'CAN.G3384.1' => 'can', 'CAN.G394.68' => 'can', 'CAN.G907.13' => 'can', 'CANSAT11G0012' => 'cansat', 'CANSAT25G1586' => 'cansat', 'CANSAT35G0735' => 'cansat', 'CANSAT54G0556' => 'cansat', 'CANSAT64G0356' => 'cansat', 'CANSAT78G2042' => 'cansat', 'CARHR125920' => 'chi', 'CARHR131910' => 'chi', 'CARHR172390' => 'chi', 'CARHR211140' => 'chi', 'CARHR285850' => 'chi', 'CARHR285860' => 'chi', 'Carub.0004s1347' => 'cru', 'Carub.0004s1960' => 'cru', 'Carub.0005s2880' => 'cru', 'Carub.0006s0107' => 'cru', 'Carub.0008s2015' => 'cru', 'Carub.0008s2016' => 'cru', 'Carub.0008s2017' => 'cru', 'Ca_01315_v3' => 'car', 'Ca_05063_v3' => 'car', 'Ca_10231_v3' => 'car', 'Ca_10913_v3' => 'car', 'Ca_19156_v3' => 'car', 'Ca_23644_v3' => 'car', 'Ca_26735_v3' => 'car', 'Cc01_g13130' => 'ccan', 'Cc02_g21690' => 'ccan', 'Cc03_g03600' => 'ccan', 'Cc06_g02510' => 'ccan', 'CDE02G1265' => 'cde', 'CDE05G0415' => 'cde', 'CDE08G1082' => 'cde', 'Cfa005780' => 'cfa', 'Cfa011522' => 'cfa', 'Cfa011523' => 'cfa', 'Cfa015627' => 'cfa', 'Cfa017359' => 'cfa', 'Ciclev10005687m.g' => 'ccl', 'Ciclev10012173m.g' => 'ccl', 'Ciclev10021621m.g' => 'ccl', 'Ciclev10028968m.g' => 'ccl', 'Ciclev10029907m.g' => 'ccl', 'CiPaw.01G164800' => 'cil', 'CiPaw.07G083700' => 'cil', 'CiPaw.07G127000' => 'cil', 'CiPaw.07G136900' => 'cil', 'CiPaw.08G081700' => 'cil', 'CiPaw.09G194600' => 'cil', 'CiPaw.10G146500' => 'cil', 'CiPaw.13G091500' => 'cil', 'CiPaw.13G091600' => 'cil', 'ClCG00G003390' => 'cla', 'ClCG01G007220' => 'cla', 'ClCG03G001370' => 'cla', 'ClCG04G008100' => 'cla', 'ClCG06G006110' => 'cla', 'ClCG06G006130' => 'cla', 'ClCG10G021210' => 'cla', 'COL.COLO4_07648' => 'col', 'COL.COLO4_07650' => 'col', 'COL.COLO4_07651' => 'col', 'COL.COLO4_14780' => 'col', 'COL.COLO4_18546' => 'col', 'COL.COLO4_18547' => 'col', 'COL.COLO4_23103' => 'col', 'COL.COLO4_30419' => 'col', 'COL.COLO4_34232' => 'col', 'Cpa.g.sc169.20' => 'cpa', 'Cpa.g.sc57.45' => 'cpa', 'Cpa.g.sc58.124' => 'cpa', 'Cpa.g.sc58.125' => 'cpa', 'Cpa.g.sc81.118' => 'cpa', 'Cpa.g.sc81.119' => 'cpa', 'Cre12.g524700' => 'cre', 'CsaV3_1G034430' => 'csa', 'CsaV3_1G034440' => 'csa', 'CsaV3_1G034450' => 'csa', 'CsaV3_3G034830' => 'csa', 'CsaV3_4G025090' => 'csa', 'CsaV3_5G018660' => 'csa', 'CsaV3_6G038160' => 'csa', 'CSS0003447' => 'camsi', 'CSS0017840' => 'camsi', 'CSS0019260' => 'camsi', 'CSS0040375' => 'camsi', 'CSS0042533' => 'camsi', 'DCAR_005960' => 'dca', 'DCAR_012104' => 'dca', 'DCAR_012105' => 'dca', 'DCAR_012293' => 'dca', 'DCAR_015632' => 'dca', 'DCAR_024602' => 'dca', 'DCAR_028752' => 'dca', 'Dinv06261' => 'din', 'Dinv13982' => 'din', 'Dinv17029' => 'din', 'Dinv18463' => 'din', 'Dinv33181' => 'din', 'Dinv35585' => 'din', 'Dinv37161' => 'din', 'Dinv42977' => 'din', 'Dinv43122' => 'din', 'Dinv44517' => 'din', 'Duzib093G0256' => 'dzi', 'Duzib106G1254' => 'dzi', 'Duzib128G1789' => 'dzi', 'Duzib133G0633' => 'dzi', 'Duzib138G0510' => 'dzi', 'Duzib150G1084' => 'dzi', 'Duzib168G0488' => 'dzi', 'Duzib168G1523' => 'dzi', 'Duzib170G0133' => 'dzi', 'ECA234G1433' => 'eca', 'ECA236G1432' => 'eca', 'ECA236G2256' => 'eca', 'ECA236G2365' => 'eca', 'ECA236G4830' => 'eca', 'ECA248G1505' => 'eca', 'EL10Ac3g06431' => 'bvu', 'EL10Ac5g12577' => 'bvu', 'EL10Ac6g13533' => 'bvu', 'EL10Ac7g16045' => 'bvu', 'Eucgr.A01281' => 'egr', 'Eucgr.B02326' => 'egr', 'Eucgr.H03532' => 'egr', 'Eucgr.K00553' => 'egr', 'Eucgr.K03116' => 'egr', 'FAN02G3963' => 'fan', 'FAN05G0438' => 'fan', 'FAN09G2434' => 'fan', 'FAN12G3984' => 'fan', 'FAN14G0798' => 'fan', 'FAN17G0652' => 'fan', 'FAN19G1988' => 'fan', 'FAN22G0632' => 'fan', 'FAN23G0387' => 'fan', 'FAN26G1323' => 'fan', 'FAN28G0666' => 'fan', 'FvH4_1g26080' => 'fve', 'FvH4_3g36780' => 'fve', 'FvH4_4g15270' => 'fve', 'FvH4_6g13490' => 'fve', 'Glyma.01G098700' => 'gma', 'Glyma.03G065900' => 'gma', 'Glyma.03G073754' => 'gma', 'Glyma.03G073758' => 'gma', 'Glyma.03G083200' => 'gma', 'Glyma.03G225500' => 'gma', 'Glyma.05G037766' => 'gma', 'Glyma.07G133500' => 'gma', 'Glyma.10G139400' => 'gma', 'Glyma.10G248900' => 'gma', 'Glyma.11G137800' => 'gma', 'Glyma.12G061300' => 'gma', 'Glyma.13G337900' => 'gma', 'Glyma.15G036600' => 'gma', 'Glyma.18G182800' => 'gma', 'Glyma.19G222500' => 'gma', 'Glyma.20G144800' => 'gma', 'Gohir.A01G222000' => 'ghi', 'Gohir.A03G044000' => 'ghi', 'Gohir.A03G044100' => 'ghi', 'Gohir.A04G083100' => 'ghi', 'Gohir.A07G127200' => 'ghi', 'Gohir.A07G132400' => 'ghi', 'Gohir.A08G000700' => 'ghi', 'Gohir.A11G327300' => 'ghi', 'Gohir.D01G211500' => 'ghi', 'Gohir.D03G123400' => 'ghi', 'Gohir.D03G123500' => 'ghi', 'Gohir.D04G121800' => 'ghi', 'Gohir.D07G131500' => 'ghi', 'Gohir.D07G136600' => 'ghi', 'Gohir.D08G011600' => 'ghi', 'Gohir.D11G346200' => 'ghi', 'Gorai.001G142800' => 'gra', 'Gorai.001G148700' => 'gra', 'Gorai.002G257300' => 'gra', 'Gorai.003G130000' => 'gra', 'Gorai.003G130100' => 'gra', 'Gorai.004G005300' => 'gra', 'Gorai.007G376500' => 'gra', 'Gorai.012G104700' => 'gra', 'GSVIVG01017946001' => 'vvi', 'GSVIVG01024928001' => 'vvi', 'GSVIVG01028227001' => 'vvi', 'GSVIVG01034151001' => 'vvi', 'HanXRQChr05g0135031' => 'han', 'HanXRQChr05g0135041' => 'han', 'HanXRQChr05g0140021' => 'han', 'HanXRQChr06g0178981' => 'han', 'HanXRQChr07g0188251' => 'han', 'HanXRQChr08g0235311' => 'han', 'HanXRQChr09g0271011' => 'han', 'HanXRQChr10g0293321' => 'han', 'HanXRQChr13g0388171' => 'han', 'Haze_00916' => 'cav', 'Haze_05063' => 'cav', 'Haze_20814' => 'cav', 'Haze_24128' => 'cav', 'Hma1.2p1_0745F.1_g212010' => 'hma', 'Hma1.2p1_0757F.1_g213260' => 'hma', 'Hma1.2p1_0936F.1_g238840' => 'hma', 'Hma1.2p1_1735F.1_g299890' => 'hma', 'Hma1.2p1_1861F.1_g305685' => 'hma', 'HPP92_003397' => 'vpl', 'HPP92_012597' => 'vpl', 'HPP92_015520' => 'vpl', 'HPP92_015539' => 'vpl', 'HPP92_020373' => 'vpl', 'Hund04938' => 'sun', 'Hund10677' => 'sun', 'Hund11033' => 'sun', 'Hund12155' => 'sun', 'Lalb_Chr01g0022551' => 'lal', 'Lalb_Chr03g0042341' => 'lal', 'Lalb_Chr07g0192931' => 'lal', 'Lalb_Chr12g0209551' => 'lal', 'Lalb_Chr19g0125251' => 'lal', 'Lalb_Chr19g0137891' => 'lal', 'Lalb_Chr21g0304641' => 'lal', 'Lalb_Chr21g0309881' => 'lal', 'Lj1A5T12' => 'lonja', 'Lj1C148G10' => 'lonja', 'Lj2A93T83' => 'lonja', 'Lj3A738G68' => 'lonja', 'Lj3C966T1' => 'lonja', 'Lj3g0018958' => 'lja', 'Lj3g0021831' => 'lja', 'Lj3g0025443' => 'lja', 'Lj4g0026809' => 'lja', 'Lj5g0012558' => 'lja', 'Lj5g0021586' => 'lja', 'Lsat_1_v5_gn_5_156840' => 'lsa', 'Lsat_1_v5_gn_8_73460' => 'lsa', 'Lsat_1_v5_gn_8_73481' => 'lsa', 'Lsat_1_v5_gn_9_31601' => 'lsa', 'Lsat_1_v5_gn_9_77320' => 'lsa', 'Manes.01G171300' => 'mes', 'Manes.01G171400' => 'mes', 'Manes.01G236100' => 'mes', 'Manes.02G130500' => 'mes', 'Manes.02G130600' => 'mes', 'Manes.03G180200' => 'mes', 'Manes.05G007000' => 'mes', 'Manes.08G084400' => 'mes', 'Manes.09G092600' => 'mes', 'Manes.15G027900' => 'mes', 'MBI04_g40948_MAGBIO' => 'mbi', 'MBI14_g12123_MAGBIO' => 'mbi', 'MBI18_g28915_MAGBIO' => 'mbi', 'MCO09G053' => 'mco', 'MCO11G782' => 'mco', 'MCO15G215' => 'mco', 'MD03G1088500' => 'mdo', 'MD03G1088600' => 'mdo', 'MD04G1130800' => 'mdo', 'MD09G1291700' => 'mdo', 'MD11G1097500' => 'mdo', 'MD11G1097600' => 'mdo', 'MD12G1143900' => 'mdo', 'MD13G1191400' => 'mdo', 'MD16G1191500' => 'mdo', 'Medtr1g085570' => 'mtr', 'Medtr1g104610' => 'mtr', 'Medtr2g097520' => 'mtr', 'Medtr4g021800' => 'mtr', 'Medtr4g021825' => 'mtr', 'Medtr4g064270' => 'mtr', 'Medtr4g064380' => 'mtr', 'Medtr7g062150' => 'mtr', 'MELO3C003138.2' => 'cme', 'MELO3C005187.2' => 'cme', 'MELO3C009252.2' => 'cme', 'MELO3C014481.2' => 'cme', 'MELO3C020616.2' => 'cme', 'MELO3C020617.2' => 'cme', 'MELO3C020618.2' => 'cme', 'Migut.G00328' => 'egut', 'Migut.J00320' => 'egut', 'Migut.L01000' => 'egut', 'Migut.L01953' => 'egut', 'MSTRG.10253' => 'ama', 'MSTRG.19077' => 'ama', 'MSTRG.26780' => 'ama', 'MSTRG.4023' => 'ama', 'MSTRG.5655' => 'ama', 'MSTRG.9992' => 'ama', 'Nitab4.5_0000043g0310' => 'nta', 'Nitab4.5_0000463g0080' => 'nta', 'Nitab4.5_0000705g0170' => 'nta', 'Nitab4.5_0001326g0060' => 'nta', 'Nitab4.5_0001628g0030' => 'nta', 'Nitab4.5_0002103g0110' => 'nta', 'Nitab4.5_0002946g0030' => 'nta', 'Nitab4.5_0004639g0030' => 'nta', 'Nn2g11149' => 'nnu', 'Nn2g13389' => 'nnu', 'Nn4g25326' => 'nnu', 'Nn4g26290' => 'nnu', 'Nn5g29865' => 'nnu', 'Oeu004163.1' => 'oeu', 'Oeu006901.1' => 'oeu', 'Oeu010096.1' => 'oeu', 'Oeu024340.1' => 'oeu', 'Oeu048369.1' => 'oeu', 'Os01g0973000' => 'osa', 'Os03g0273800' => 'osa', 'Os03g0701200' => 'osa', 'Os03g0834050' => 'osa', 'Os07g0634400' => 'osa', 'Peaxi162Scf00092g01414' => 'pax', 'Peaxi162Scf00165g00818' => 'pax', 'Peaxi162Scf00309g00516' => 'pax', 'Peaxi162Scf00774g00218' => 'pax', 'PGR004G1824' => 'pgr', 'PGR004G2606' => 'pgr', 'PGR031G2716' => 'pgr', 'PGR102G2460' => 'pgr', 'PGR142G2599' => 'pgr', 'PGSC0003DMG400000843' => 'stu', 'PGSC0003DMG400008829' => 'stu', 'PGSC0003DMG400030418' => 'stu', 'PGSC0003DMG400031834' => 'stu', 'PGSC0003DMG401028300' => 'stu', 'PGSC0003DMG402028300' => 'stu', 'Phvul.001G219300' => 'pvu', 'Phvul.007G056000' => 'pvu', 'Phvul.007G208000' => 'pvu', 'Phvul.008G119500' => 'pvu', 'Phvul.010G011200' => 'pvu', 'Phvul.010G014800' => 'pvu', 'Phvul.011G062900' => 'pvu', 'Phvul.L007043' => 'pvu', 'Potri.001G242300' => 'ptr', 'Potri.002G185300' => 'ptr', 'Potri.006G086900' => 'ptr', 'Potri.008G151700' => 'ptr', 'Potri.009G033500' => 'ptr', 'Potri.010G089300' => 'ptr', 'Potri.014G110800' => 'ptr', 'Pp3c27_8130' => 'ppa', 'Pp3c6_27410' => 'ppa', 'PRCOL_00001659' => 'pco', 'PRCOL_00001927' => 'pco', 'PRCOL_00003649' => 'pco', 'Prupe.1G011600' => 'ppe', 'Prupe.3G000800' => 'ppe', 'Prupe.3G001100' => 'ppe', 'Prupe.6G072700' => 'ppe', 'Prupe.6G072800' => 'ppe', 'Prupe.6G257300' => 'ppe', 'Prupe.8G033000' => 'ppe', 'Psat0s2633g0080' => 'psa', 'Psat0s3396g0080' => 'psa', 'Psat0s3396g0200' => 'psa', 'Psat3g139080' => 'psa', 'Psat5g285080' => 'psa', 'Psat6g157760' => 'psa', 'Psat6g208440' => 'psa', 'Psat7g215320' => 'psa', 'Psat7g215400' => 'psa', 'Psat7g235600' => 'psa', 'Psat7g235760' => 'psa', 'PSO063G4603' => 'pso', 'PSO210G0182' => 'pso', 'PSO210G0196' => 'pso', 'PSO339G0394' => 'pso', 'PSO339G4127' => 'pso', 'PSO513G0064' => 'pso', 'PSO761G0079' => 'pso', 'QL01p031003' => 'qlo', 'QL01p031078' => 'qlo', 'QL06p003004' => 'qlo', 'QL07p048731' => 'qlo', 'QL09p037427' => 'qlo', 'RcHm_v2.0_Chr3g0466361' => 'rch', 'RcHm_v2.0_Chr3g0485571' => 'rch', 'RcHm_v2.0_Chr4g0416551' => 'rch', 'RcHm_v2.0_Chr5g0065831' => 'rch', 'Rhsim01G0230500' => 'rsi', 'Rhsim05G0194000' => 'rsi', 'Rhsim08G0250400' => 'rsi', 'Sabra02G0131000' => 'sbr', 'Sabra06G0066300' => 'sbr', 'Sabra08G0115500' => 'sbr', 'Sabra09G0023900' => 'sbr', 'Sabra10G0054000' => 'sbr', 'Sabra14G0081500' => 'sbr', 'Sabra16G0147100' => 'sbr', 'SalBow2G2957' => 'sbo', 'SalBow4G3320' => 'sbo', 'SalBow8G1894' => 'sbo', 'Sc07g0007950' => 'sci', 'Sc12g0001360' => 'sci', 'Sc13g0004330' => 'sci', 'Sc20g0005010' => 'sci', 'Sed0000361' => 'sed', 'Sed0001706' => 'sed', 'Sed0002422' => 'sed', 'Sed0004029' => 'sed', 'Sed0004602' => 'sed', 'Sed0004943' => 'sed', 'Sed0008646' => 'sed', 'Sed0023313' => 'sed', 'Sed0024843' => 'sed', 'SEGI_00081' => 'sgi', 'SEGI_00947' => 'sgi', 'SEGI_04046' => 'sgi', 'SEGI_06880' => 'sgi', 'SEGI_09736' => 'sgi', 'SEGI_12741' => 'sgi', 'SEGI_14530' => 'sgi', 'SEGI_20705' => 'sgi', 'SEGI_26088' => 'sgi', 'SEGI_28323' => 'sgi', 'SEGI_33343' => 'sgi', 'SGA_v2.0_scaffold126G33775' => 'sas', 'SGA_v2.0_scaffold2G01337' => 'sas', 'SGA_v2.0_scaffold38G15006' => 'sas', 'SGA_v2.0_scaffold39G15264' => 'sas', 'SGA_v2.0_scaffold453G51880' => 'sas', 'SHI12696' => 'shi', 'SMO367G1096' => 'smo', 'Solyc01g068630.3' => 'sly', 'Solyc05g011880.3' => 'sly', 'Solyc06g076300.3' => 'sly', 'Solyc09g010940.4' => 'sly', 'Solyc09g075890.3' => 'sly', 'Sopen01g030560' => 'spe', 'Sopen05g006630' => 'spe', 'Sopen06g032720' => 'spe', 'Sopen09g005660' => 'spe', 'Sopen09g030690' => 'spe', 'Sp4g14540' => 'spa', 'Sp4g20030' => 'spa', 'Sp5g01320' => 'spa', 'Sp6g21170' => 'spa', 'Sp6g21180' => 'spa', 'Sp6g21190' => 'spa', 'Sp6g40220' => 'spa', 'TAR362G0122' => 'tar', 'TAR362G1338' => 'tar', 'TAR369G0590' => 'tar', 'TAR371G0824' => 'tar', 'TAR622G1429' => 'tar', 'TAR623G0734' => 'tar', 'TAR625G0441' => 'tar', 'TAR629G0976' => 'tar', 'TAR633G1195' => 'tar', 'TAR636G2660' => 'tar', 'THA.LOC104799440' => 'tha', 'THA.LOC104800966' => 'tha', 'THA.LOC104806559' => 'tha', 'THA.LOC104810765' => 'tha', 'THA.LOC104816266' => 'tha', 'THA.LOC104817419' => 'tha', 'THA.LOC104827021' => 'tha', 'Thecc.01G327400' => 'tca', 'Thecc.04G229200' => 'tca', 'Thecc.05G037400' => 'tca', 'Thecc.09G318600' => 'tca', 'Thecc.09G318700' => 'tca', 'Thhalv10006238m.g' => 'esa', 'Thhalv10014321m.g' => 'esa', 'Thhalv10014335m.g' => 'esa', 'Thhalv10015826m.g' => 'esa', 'Thhalv10017107m.g' => 'esa', 'Thhalv10017180m.g' => 'esa', 'Thhalv10029339m.g' => 'esa', 'TPR.G1699' => 'tpr', 'TPR.G23609' => 'tpr', 'TPR.G3081' => 'tpr', 'TPR.G40397' => 'tpr', 'TPR.G5522' => 'tpr', 'TPR.G5618' => 'tpr', 'TPR.G5626' => 'tpr', 'TWI09G1632' => 'twi', 'TWI23G1230' => 'twi', 'TWI53G1064' => 'twi', 'TWI59G0751' => 'twi', 'TWI74G0947' => 'twi', 'TWI77G0337' => 'twi', 'TWI79G1254' => 'twi', 'unitig_0.g2341' => 'ugi', 'unitig_26.g10006' => 'ugi', 'unitig_26.g10008' => 'ugi', 'unitig_26.g9192' => 'ugi', 'vmacro14547' => 'vma', 'vmacro15333' => 'vma', 'vmacro18743' => 'vma', 'vmacro20166' => 'vma', 'VMungo0331G0523' => 'vmu', 'VMungo0331G1202' => 'vmu', 'VMungo0720G1228' => 'vmu', 'VMungo0720G1514' => 'vmu', 'VMungo1080G0169' => 'vmu', 'VMungo1127G1475' => 'vmu', 'VMungo1383G1208' => 'vmu', 'VMungo1383G1698' => 'vmu', 'Zm00001eb012270' => 'zma', 'Zm00001eb054100' => 'zma', 'Zm00001eb063350' => 'zma', 'Zm00001eb328560' => 'zma', 'Zm00001eb342820' => 'zma', 'Zm00001eb362210' => 'zma', 'Zm00001eb397730' => 'zma', 'Zm00001eb399750' => 'zma' ) $gf_id = 'HOM05D000959' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000959' ) $data_identifier = 'HOM05D000959' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 5, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 5, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 10, 'mbi' => (int) 3, 'mco' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 2, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 3, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 11, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399750' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000959', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '622', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p07100' => 'bna', 'A03p11720' => 'bna', 'A05p08300' => 'bna', 'A05p13380' => 'bna', 'A09p54130' => 'bna', 'A10p16690' => 'bna', 'A10p16700' => 'bna', 'A10p33390' => 'bna', 'Aa31LG10G16020' => 'aar', 'Aa31LG1G11810' => 'aar', 'Aa31LG1G11830' => 'aar', 'Aa31LG1G22510' => 'aar', 'Aa31LG5G4890' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5793' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2310' => 'aag', 'Actinidia08499' => 'ach', 'Actinidia11262' => 'ach', 'Actinidia23926' => 'ach', 'Actinidia34420' => 'ach', 'Actinidia36970' => 'ach', 'Ah.02g111220' => 'amhyb', 'Ah.15g097750' => 'amhyb', 'AL4G27500' => 'aly', 'AL6G11470' => 'aly', 'AL8G35950' => 'aly', 'AL8G35960' => 'aly', 'AL8G35970' => 'aly', 'Aqoxy1G00912' => 'aox', 'Aqoxy2G02253' => 'aox', 'Aqoxy2G02411' => 'aox', 'Aqoxy5G00485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BZ66YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K8ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM4FUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6BF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HFV7XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25JBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0YNNV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MAKK6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P70IT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP2Z6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V61LZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YWP64R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3S9AI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7PGHH' => 'arhy', 'AT2G32150' => 'ath', 'AT3G62040' => 'ath', 'AT5G02230' => 'ath', 'AT5G59480' => 'ath', 'AT5G59490' => 'ath', 'ATR0332G060' => 'atr', 'ATR0559G190' => 'atr', 'ATR0693G294' => 'atr', 'Atru.chr3.3975' => 'acertr', 'Atru.chr3.3976' => 'acertr', 'Atru.chr3.3977' => 'acertr', 'Atru.chr4.2498' => 'acertr', 'Atru.chr5.838' => 'acertr', 'Atru.chr8.1990' => 'acertr', 'Atru.chr8.1991' => 'acertr', 'Atru.chr8.1992' => 'acertr', 'AUR62001759' => 'cqu', 'AUR62009545' => 'cqu', 'AUR62010474' => 'cqu', 'AUR62025820' => 'cqu', 'AUR62030422' => 'cqu', 'AUR62033605' => 'cqu', 'AUR62038615' => 'cqu', 'AUR62041347' => 'cqu', 'BcaB01g04574' => 'bca', 'BcaB02g09263' => 'bca', 'BcaB02g10453' => 'bca', 'BcaB05g22513' => 'bca', 'BcaB08g36253' => 'bca', 'BcaB08g36254' => 'bca', 'BcaC01g06519' => 'bca', 'BcaC02g11889' => 'bca', 'BcaC03g14010' => 'bca', 'BcaC03g18439' => 'bca', 'BcaC04g19765' => 'bca', 'BcaC09g48432' => 'bca', 'BcaNung07302' => 'bca', 'BolC2t06040H' => 'bol', 'BolC2t07346H' => 'bol', 'BolC3t13817H' => 'bol', 'BolC4t22625H' => 'bol', 'BolC4t23297H' => 'bol', 'BolC8t51278H' => 'bol', 'BolC9t58050H' => 'bol', 'BolC9t58051H' => 'bol', 'BolC9t60163H' => 'bol', 'BraA02t04712Z' => 'bra', 'BraA02t05791Z' => 'bra', 'BraA03t10483Z' => 'bra', 'BraA05t19795Z' => 'bra', 'BraA05t20276Z' => 'bra', 'BraA09t40827Z' => 'bra', 'BraA10t43750Z' => 'bra', 'BraA10t43751Z' => 'bra', 'BraA10t45370Z' => 'bra', 'C02p00400' => 'bna', 'C02p12460' => 'bna', 'C03p13680' => 'bna', 'C04p10270' => 'bna', 'C04p17500' => 'bna', 'C08p37010' => 'bna', 'C09p51880' => 'bna', 'C09p51890' => 'bna', 'C09p74300' => 'bna', 'CAN.G179.26' => 'can', 'CAN.G3384.1' => 'can', 'CAN.G394.68' => 'can', 'CAN.G907.13' => 'can', 'CANSAT11G0012' => 'cansat', 'CANSAT25G1586' => 'cansat', 'CANSAT35G0735' => 'cansat', 'CANSAT54G0556' => 'cansat', 'CANSAT64G0356' => 'cansat', 'CANSAT78G2042' => 'cansat', 'CARHR125920' => 'chi', 'CARHR131910' => 'chi', 'CARHR172390' => 'chi', 'CARHR211140' => 'chi', 'CARHR285850' => 'chi', 'CARHR285860' => 'chi', 'Carub.0004s1347' => 'cru', 'Carub.0004s1960' => 'cru', 'Carub.0005s2880' => 'cru', 'Carub.0006s0107' => 'cru', 'Carub.0008s2015' => 'cru', 'Carub.0008s2016' => 'cru', 'Carub.0008s2017' => 'cru', 'Ca_01315_v3' => 'car', 'Ca_05063_v3' => 'car', 'Ca_10231_v3' => 'car', 'Ca_10913_v3' => 'car', 'Ca_19156_v3' => 'car', 'Ca_23644_v3' => 'car', 'Ca_26735_v3' => 'car', 'Cc01_g13130' => 'ccan', 'Cc02_g21690' => 'ccan', 'Cc03_g03600' => 'ccan', 'Cc06_g02510' => 'ccan', 'CDE02G1265' => 'cde', 'CDE05G0415' => 'cde', 'CDE08G1082' => 'cde', 'Cfa005780' => 'cfa', 'Cfa011522' => 'cfa', 'Cfa011523' => 'cfa', 'Cfa015627' => 'cfa', 'Cfa017359' => 'cfa', 'Ciclev10005687m.g' => 'ccl', 'Ciclev10012173m.g' => 'ccl', 'Ciclev10021621m.g' => 'ccl', 'Ciclev10028968m.g' => 'ccl', 'Ciclev10029907m.g' => 'ccl', 'CiPaw.01G164800' => 'cil', 'CiPaw.07G083700' => 'cil', 'CiPaw.07G127000' => 'cil', 'CiPaw.07G136900' => 'cil', 'CiPaw.08G081700' => 'cil', 'CiPaw.09G194600' => 'cil', 'CiPaw.10G146500' => 'cil', 'CiPaw.13G091500' => 'cil', 'CiPaw.13G091600' => 'cil', 'ClCG00G003390' => 'cla', 'ClCG01G007220' => 'cla', 'ClCG03G001370' => 'cla', 'ClCG04G008100' => 'cla', 'ClCG06G006110' => 'cla', 'ClCG06G006130' => 'cla', 'ClCG10G021210' => 'cla', 'COL.COLO4_07648' => 'col', 'COL.COLO4_07650' => 'col', 'COL.COLO4_07651' => 'col', 'COL.COLO4_14780' => 'col', 'COL.COLO4_18546' => 'col', 'COL.COLO4_18547' => 'col', 'COL.COLO4_23103' => 'col', 'COL.COLO4_30419' => 'col', 'COL.COLO4_34232' => 'col', 'Cpa.g.sc169.20' => 'cpa', 'Cpa.g.sc57.45' => 'cpa', 'Cpa.g.sc58.124' => 'cpa', 'Cpa.g.sc58.125' => 'cpa', 'Cpa.g.sc81.118' => 'cpa', 'Cpa.g.sc81.119' => 'cpa', 'Cre12.g524700' => 'cre', 'CsaV3_1G034430' => 'csa', 'CsaV3_1G034440' => 'csa', 'CsaV3_1G034450' => 'csa', 'CsaV3_3G034830' => 'csa', 'CsaV3_4G025090' => 'csa', 'CsaV3_5G018660' => 'csa', 'CsaV3_6G038160' => 'csa', 'CSS0003447' => 'camsi', 'CSS0017840' => 'camsi', 'CSS0019260' => 'camsi', 'CSS0040375' => 'camsi', 'CSS0042533' => 'camsi', 'DCAR_005960' => 'dca', 'DCAR_012104' => 'dca', 'DCAR_012105' => 'dca', 'DCAR_012293' => 'dca', 'DCAR_015632' => 'dca', 'DCAR_024602' => 'dca', 'DCAR_028752' => 'dca', 'Dinv06261' => 'din', 'Dinv13982' => 'din', 'Dinv17029' => 'din', 'Dinv18463' => 'din', 'Dinv33181' => 'din', 'Dinv35585' => 'din', 'Dinv37161' => 'din', 'Dinv42977' => 'din', 'Dinv43122' => 'din', 'Dinv44517' => 'din', 'Duzib093G0256' => 'dzi', 'Duzib106G1254' => 'dzi', 'Duzib128G1789' => 'dzi', 'Duzib133G0633' => 'dzi', 'Duzib138G0510' => 'dzi', 'Duzib150G1084' => 'dzi', 'Duzib168G0488' => 'dzi', 'Duzib168G1523' => 'dzi', 'Duzib170G0133' => 'dzi', 'ECA234G1433' => 'eca', 'ECA236G1432' => 'eca', 'ECA236G2256' => 'eca', 'ECA236G2365' => 'eca', 'ECA236G4830' => 'eca', 'ECA248G1505' => 'eca', 'EL10Ac3g06431' => 'bvu', 'EL10Ac5g12577' => 'bvu', 'EL10Ac6g13533' => 'bvu', 'EL10Ac7g16045' => 'bvu', 'Eucgr.A01281' => 'egr', 'Eucgr.B02326' => 'egr', 'Eucgr.H03532' => 'egr', 'Eucgr.K00553' => 'egr', 'Eucgr.K03116' => 'egr', 'FAN02G3963' => 'fan', 'FAN05G0438' => 'fan', 'FAN09G2434' => 'fan', 'FAN12G3984' => 'fan', 'FAN14G0798' => 'fan', 'FAN17G0652' => 'fan', 'FAN19G1988' => 'fan', 'FAN22G0632' => 'fan', 'FAN23G0387' => 'fan', 'FAN26G1323' => 'fan', 'FAN28G0666' => 'fan', 'FvH4_1g26080' => 'fve', 'FvH4_3g36780' => 'fve', 'FvH4_4g15270' => 'fve', 'FvH4_6g13490' => 'fve', 'Glyma.01G098700' => 'gma', 'Glyma.03G065900' => 'gma', 'Glyma.03G073754' => 'gma', 'Glyma.03G073758' => 'gma', 'Glyma.03G083200' => 'gma', 'Glyma.03G225500' => 'gma', 'Glyma.05G037766' => 'gma', 'Glyma.07G133500' => 'gma', 'Glyma.10G139400' => 'gma', 'Glyma.10G248900' => 'gma', 'Glyma.11G137800' => 'gma', 'Glyma.12G061300' => 'gma', 'Glyma.13G337900' => 'gma', 'Glyma.15G036600' => 'gma', 'Glyma.18G182800' => 'gma', 'Glyma.19G222500' => 'gma', 'Glyma.20G144800' => 'gma', 'Gohir.A01G222000' => 'ghi', 'Gohir.A03G044000' => 'ghi', 'Gohir.A03G044100' => 'ghi', 'Gohir.A04G083100' => 'ghi', 'Gohir.A07G127200' => 'ghi', 'Gohir.A07G132400' => 'ghi', 'Gohir.A08G000700' => 'ghi', 'Gohir.A11G327300' => 'ghi', 'Gohir.D01G211500' => 'ghi', 'Gohir.D03G123400' => 'ghi', 'Gohir.D03G123500' => 'ghi', 'Gohir.D04G121800' => 'ghi', 'Gohir.D07G131500' => 'ghi', 'Gohir.D07G136600' => 'ghi', 'Gohir.D08G011600' => 'ghi', 'Gohir.D11G346200' => 'ghi', 'Gorai.001G142800' => 'gra', 'Gorai.001G148700' => 'gra', 'Gorai.002G257300' => 'gra', 'Gorai.003G130000' => 'gra', 'Gorai.003G130100' => 'gra', 'Gorai.004G005300' => 'gra', 'Gorai.007G376500' => 'gra', 'Gorai.012G104700' => 'gra', 'GSVIVG01017946001' => 'vvi', 'GSVIVG01024928001' => 'vvi', 'GSVIVG01028227001' => 'vvi', 'GSVIVG01034151001' => 'vvi', 'HanXRQChr05g0135031' => 'han', 'HanXRQChr05g0135041' => 'han', 'HanXRQChr05g0140021' => 'han', 'HanXRQChr06g0178981' => 'han', 'HanXRQChr07g0188251' => 'han', 'HanXRQChr08g0235311' => 'han', 'HanXRQChr09g0271011' => 'han', 'HanXRQChr10g0293321' => 'han', 'HanXRQChr13g0388171' => 'han', 'Haze_00916' => 'cav', 'Haze_05063' => 'cav', 'Haze_20814' => 'cav', 'Haze_24128' => 'cav', 'Hma1.2p1_0745F.1_g212010' => 'hma', 'Hma1.2p1_0757F.1_g213260' => 'hma', 'Hma1.2p1_0936F.1_g238840' => 'hma', 'Hma1.2p1_1735F.1_g299890' => 'hma', 'Hma1.2p1_1861F.1_g305685' => 'hma', 'HPP92_003397' => 'vpl', 'HPP92_012597' => 'vpl', 'HPP92_015520' => 'vpl', 'HPP92_015539' => 'vpl', 'HPP92_020373' => 'vpl', 'Hund04938' => 'sun', 'Hund10677' => 'sun', 'Hund11033' => 'sun', 'Hund12155' => 'sun', 'Lalb_Chr01g0022551' => 'lal', 'Lalb_Chr03g0042341' => 'lal', 'Lalb_Chr07g0192931' => 'lal', 'Lalb_Chr12g0209551' => 'lal', 'Lalb_Chr19g0125251' => 'lal', 'Lalb_Chr19g0137891' => 'lal', 'Lalb_Chr21g0304641' => 'lal', 'Lalb_Chr21g0309881' => 'lal', 'Lj1A5T12' => 'lonja', 'Lj1C148G10' => 'lonja', 'Lj2A93T83' => 'lonja', 'Lj3A738G68' => 'lonja', 'Lj3C966T1' => 'lonja', 'Lj3g0018958' => 'lja', 'Lj3g0021831' => 'lja', 'Lj3g0025443' => 'lja', 'Lj4g0026809' => 'lja', 'Lj5g0012558' => 'lja', 'Lj5g0021586' => 'lja', 'Lsat_1_v5_gn_5_156840' => 'lsa', 'Lsat_1_v5_gn_8_73460' => 'lsa', 'Lsat_1_v5_gn_8_73481' => 'lsa', 'Lsat_1_v5_gn_9_31601' => 'lsa', 'Lsat_1_v5_gn_9_77320' => 'lsa', 'Manes.01G171300' => 'mes', 'Manes.01G171400' => 'mes', 'Manes.01G236100' => 'mes', 'Manes.02G130500' => 'mes', 'Manes.02G130600' => 'mes', 'Manes.03G180200' => 'mes', 'Manes.05G007000' => 'mes', 'Manes.08G084400' => 'mes', 'Manes.09G092600' => 'mes', 'Manes.15G027900' => 'mes', 'MBI04_g40948_MAGBIO' => 'mbi', 'MBI14_g12123_MAGBIO' => 'mbi', 'MBI18_g28915_MAGBIO' => 'mbi', 'MCO09G053' => 'mco', 'MCO11G782' => 'mco', 'MCO15G215' => 'mco', 'MD03G1088500' => 'mdo', 'MD03G1088600' => 'mdo', 'MD04G1130800' => 'mdo', 'MD09G1291700' => 'mdo', 'MD11G1097500' => 'mdo', 'MD11G1097600' => 'mdo', 'MD12G1143900' => 'mdo', 'MD13G1191400' => 'mdo', 'MD16G1191500' => 'mdo', 'Medtr1g085570' => 'mtr', 'Medtr1g104610' => 'mtr', 'Medtr2g097520' => 'mtr', 'Medtr4g021800' => 'mtr', 'Medtr4g021825' => 'mtr', 'Medtr4g064270' => 'mtr', 'Medtr4g064380' => 'mtr', 'Medtr7g062150' => 'mtr', 'MELO3C003138.2' => 'cme', 'MELO3C005187.2' => 'cme', 'MELO3C009252.2' => 'cme', 'MELO3C014481.2' => 'cme', 'MELO3C020616.2' => 'cme', 'MELO3C020617.2' => 'cme', 'MELO3C020618.2' => 'cme', 'Migut.G00328' => 'egut', 'Migut.J00320' => 'egut', 'Migut.L01000' => 'egut', 'Migut.L01953' => 'egut', 'MSTRG.10253' => 'ama', 'MSTRG.19077' => 'ama', 'MSTRG.26780' => 'ama', 'MSTRG.4023' => 'ama', 'MSTRG.5655' => 'ama', 'MSTRG.9992' => 'ama', 'Nitab4.5_0000043g0310' => 'nta', 'Nitab4.5_0000463g0080' => 'nta', 'Nitab4.5_0000705g0170' => 'nta', 'Nitab4.5_0001326g0060' => 'nta', 'Nitab4.5_0001628g0030' => 'nta', 'Nitab4.5_0002103g0110' => 'nta', 'Nitab4.5_0002946g0030' => 'nta', 'Nitab4.5_0004639g0030' => 'nta', 'Nn2g11149' => 'nnu', 'Nn2g13389' => 'nnu', 'Nn4g25326' => 'nnu', 'Nn4g26290' => 'nnu', 'Nn5g29865' => 'nnu', 'Oeu004163.1' => 'oeu', 'Oeu006901.1' => 'oeu', 'Oeu010096.1' => 'oeu', 'Oeu024340.1' => 'oeu', 'Oeu048369.1' => 'oeu', 'Os01g0973000' => 'osa', 'Os03g0273800' => 'osa', 'Os03g0701200' => 'osa', 'Os03g0834050' => 'osa', 'Os07g0634400' => 'osa', 'Peaxi162Scf00092g01414' => 'pax', 'Peaxi162Scf00165g00818' => 'pax', 'Peaxi162Scf00309g00516' => 'pax', 'Peaxi162Scf00774g00218' => 'pax', 'PGR004G1824' => 'pgr', 'PGR004G2606' => 'pgr', 'PGR031G2716' => 'pgr', 'PGR102G2460' => 'pgr', 'PGR142G2599' => 'pgr', 'PGSC0003DMG400000843' => 'stu', 'PGSC0003DMG400008829' => 'stu', 'PGSC0003DMG400030418' => 'stu', 'PGSC0003DMG400031834' => 'stu', 'PGSC0003DMG401028300' => 'stu', 'PGSC0003DMG402028300' => 'stu', 'Phvul.001G219300' => 'pvu', 'Phvul.007G056000' => 'pvu', 'Phvul.007G208000' => 'pvu', 'Phvul.008G119500' => 'pvu', 'Phvul.010G011200' => 'pvu', 'Phvul.010G014800' => 'pvu', 'Phvul.011G062900' => 'pvu', 'Phvul.L007043' => 'pvu', 'Potri.001G242300' => 'ptr', 'Potri.002G185300' => 'ptr', 'Potri.006G086900' => 'ptr', 'Potri.008G151700' => 'ptr', 'Potri.009G033500' => 'ptr', 'Potri.010G089300' => 'ptr', 'Potri.014G110800' => 'ptr', 'Pp3c27_8130' => 'ppa', 'Pp3c6_27410' => 'ppa', 'PRCOL_00001659' => 'pco', 'PRCOL_00001927' => 'pco', 'PRCOL_00003649' => 'pco', 'Prupe.1G011600' => 'ppe', 'Prupe.3G000800' => 'ppe', 'Prupe.3G001100' => 'ppe', 'Prupe.6G072700' => 'ppe', 'Prupe.6G072800' => 'ppe', 'Prupe.6G257300' => 'ppe', 'Prupe.8G033000' => 'ppe', 'Psat0s2633g0080' => 'psa', 'Psat0s3396g0080' => 'psa', 'Psat0s3396g0200' => 'psa', 'Psat3g139080' => 'psa', 'Psat5g285080' => 'psa', 'Psat6g157760' => 'psa', 'Psat6g208440' => 'psa', 'Psat7g215320' => 'psa', 'Psat7g215400' => 'psa', 'Psat7g235600' => 'psa', 'Psat7g235760' => 'psa', 'PSO063G4603' => 'pso', 'PSO210G0182' => 'pso', 'PSO210G0196' => 'pso', 'PSO339G0394' => 'pso', 'PSO339G4127' => 'pso', 'PSO513G0064' => 'pso', 'PSO761G0079' => 'pso', 'QL01p031003' => 'qlo', 'QL01p031078' => 'qlo', 'QL06p003004' => 'qlo', 'QL07p048731' => 'qlo', 'QL09p037427' => 'qlo', 'RcHm_v2.0_Chr3g0466361' => 'rch', 'RcHm_v2.0_Chr3g0485571' => 'rch', 'RcHm_v2.0_Chr4g0416551' => 'rch', 'RcHm_v2.0_Chr5g0065831' => 'rch', 'Rhsim01G0230500' => 'rsi', 'Rhsim05G0194000' => 'rsi', 'Rhsim08G0250400' => 'rsi', 'Sabra02G0131000' => 'sbr', 'Sabra06G0066300' => 'sbr', 'Sabra08G0115500' => 'sbr', 'Sabra09G0023900' => 'sbr', 'Sabra10G0054000' => 'sbr', 'Sabra14G0081500' => 'sbr', 'Sabra16G0147100' => 'sbr', 'SalBow2G2957' => 'sbo', 'SalBow4G3320' => 'sbo', 'SalBow8G1894' => 'sbo', 'Sc07g0007950' => 'sci', 'Sc12g0001360' => 'sci', 'Sc13g0004330' => 'sci', 'Sc20g0005010' => 'sci', 'Sed0000361' => 'sed', 'Sed0001706' => 'sed', 'Sed0002422' => 'sed', 'Sed0004029' => 'sed', 'Sed0004602' => 'sed', 'Sed0004943' => 'sed', 'Sed0008646' => 'sed', 'Sed0023313' => 'sed', 'Sed0024843' => 'sed', 'SEGI_00081' => 'sgi', 'SEGI_00947' => 'sgi', 'SEGI_04046' => 'sgi', 'SEGI_06880' => 'sgi', 'SEGI_09736' => 'sgi', 'SEGI_12741' => 'sgi', 'SEGI_14530' => 'sgi', 'SEGI_20705' => 'sgi', 'SEGI_26088' => 'sgi', 'SEGI_28323' => 'sgi', 'SEGI_33343' => 'sgi', 'SGA_v2.0_scaffold126G33775' => 'sas', 'SGA_v2.0_scaffold2G01337' => 'sas', 'SGA_v2.0_scaffold38G15006' => 'sas', 'SGA_v2.0_scaffold39G15264' => 'sas', 'SGA_v2.0_scaffold453G51880' => 'sas', 'SHI12696' => 'shi', 'SMO367G1096' => 'smo', 'Solyc01g068630.3' => 'sly', 'Solyc05g011880.3' => 'sly', 'Solyc06g076300.3' => 'sly', 'Solyc09g010940.4' => 'sly', 'Solyc09g075890.3' => 'sly', 'Sopen01g030560' => 'spe', 'Sopen05g006630' => 'spe', 'Sopen06g032720' => 'spe', 'Sopen09g005660' => 'spe', 'Sopen09g030690' => 'spe', 'Sp4g14540' => 'spa', 'Sp4g20030' => 'spa', 'Sp5g01320' => 'spa', 'Sp6g21170' => 'spa', 'Sp6g21180' => 'spa', 'Sp6g21190' => 'spa', 'Sp6g40220' => 'spa', 'TAR362G0122' => 'tar', 'TAR362G1338' => 'tar', 'TAR369G0590' => 'tar', 'TAR371G0824' => 'tar', 'TAR622G1429' => 'tar', 'TAR623G0734' => 'tar', 'TAR625G0441' => 'tar', 'TAR629G0976' => 'tar', 'TAR633G1195' => 'tar', 'TAR636G2660' => 'tar', 'THA.LOC104799440' => 'tha', 'THA.LOC104800966' => 'tha', 'THA.LOC104806559' => 'tha', 'THA.LOC104810765' => 'tha', 'THA.LOC104816266' => 'tha', 'THA.LOC104817419' => 'tha', 'THA.LOC104827021' => 'tha', 'Thecc.01G327400' => 'tca', 'Thecc.04G229200' => 'tca', 'Thecc.05G037400' => 'tca', 'Thecc.09G318600' => 'tca', 'Thecc.09G318700' => 'tca', 'Thhalv10006238m.g' => 'esa', 'Thhalv10014321m.g' => 'esa', 'Thhalv10014335m.g' => 'esa', 'Thhalv10015826m.g' => 'esa', 'Thhalv10017107m.g' => 'esa', 'Thhalv10017180m.g' => 'esa', 'Thhalv10029339m.g' => 'esa', 'TPR.G1699' => 'tpr', 'TPR.G23609' => 'tpr', 'TPR.G3081' => 'tpr', 'TPR.G40397' => 'tpr', 'TPR.G5522' => 'tpr', 'TPR.G5618' => 'tpr', 'TPR.G5626' => 'tpr', 'TWI09G1632' => 'twi', 'TWI23G1230' => 'twi', 'TWI53G1064' => 'twi', 'TWI59G0751' => 'twi', 'TWI74G0947' => 'twi', 'TWI77G0337' => 'twi', 'TWI79G1254' => 'twi', 'unitig_0.g2341' => 'ugi', 'unitig_26.g10006' => 'ugi', 'unitig_26.g10008' => 'ugi', 'unitig_26.g9192' => 'ugi', 'vmacro14547' => 'vma', 'vmacro15333' => 'vma', 'vmacro18743' => 'vma', 'vmacro20166' => 'vma', 'VMungo0331G0523' => 'vmu', 'VMungo0331G1202' => 'vmu', 'VMungo0720G1228' => 'vmu', 'VMungo0720G1514' => 'vmu', 'VMungo1080G0169' => 'vmu', 'VMungo1127G1475' => 'vmu', 'VMungo1383G1208' => 'vmu', 'VMungo1383G1698' => 'vmu', 'Zm00001eb012270' => 'zma', 'Zm00001eb054100' => 'zma', 'Zm00001eb063350' => 'zma', 'Zm00001eb328560' => 'zma', 'Zm00001eb342820' => 'zma', 'Zm00001eb362210' => 'zma', 'Zm00001eb397730' => 'zma', 'Zm00001eb399750' => 'zma' ), 'gf_id' => 'HOM05D000959', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000959' ), 'data_identifier' => 'HOM05D000959', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000959', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '622', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p07100' => 'bna', 'A03p11720' => 'bna', 'A05p08300' => 'bna', 'A05p13380' => 'bna', 'A09p54130' => 'bna', 'A10p16690' => 'bna', 'A10p16700' => 'bna', 'A10p33390' => 'bna', 'Aa31LG10G16020' => 'aar', 'Aa31LG1G11810' => 'aar', 'Aa31LG1G11830' => 'aar', 'Aa31LG1G22510' => 'aar', 'Aa31LG5G4890' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5793' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2310' => 'aag', 'Actinidia08499' => 'ach', 'Actinidia11262' => 'ach', 'Actinidia23926' => 'ach', 'Actinidia34420' => 'ach', 'Actinidia36970' => 'ach', 'Ah.02g111220' => 'amhyb', 'Ah.15g097750' => 'amhyb', 'AL4G27500' => 'aly', 'AL6G11470' => 'aly', 'AL8G35950' => 'aly', 'AL8G35960' => 'aly', 'AL8G35970' => 'aly', 'Aqoxy1G00912' => 'aox', 'Aqoxy2G02253' => 'aox', 'Aqoxy2G02411' => 'aox', 'Aqoxy5G00485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BZ66YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K8ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM4FUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6BF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HFV7XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25JBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0YNNV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MAKK6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P70IT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP2Z6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V61LZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YWP64R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3S9AI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7PGHH' => 'arhy', 'AT2G32150' => 'ath', 'AT3G62040' => 'ath', 'AT5G02230' => 'ath', 'AT5G59480' => 'ath', 'AT5G59490' => 'ath', 'ATR0332G060' => 'atr', 'ATR0559G190' => 'atr', 'ATR0693G294' => 'atr', 'Atru.chr3.3975' => 'acertr', 'Atru.chr3.3976' => 'acertr', 'Atru.chr3.3977' => 'acertr', 'Atru.chr4.2498' => 'acertr', 'Atru.chr5.838' => 'acertr', 'Atru.chr8.1990' => 'acertr', 'Atru.chr8.1991' => 'acertr', 'Atru.chr8.1992' => 'acertr', 'AUR62001759' => 'cqu', 'AUR62009545' => 'cqu', 'AUR62010474' => 'cqu', 'AUR62025820' => 'cqu', 'AUR62030422' => 'cqu', 'AUR62033605' => 'cqu', 'AUR62038615' => 'cqu', 'AUR62041347' => 'cqu', 'BcaB01g04574' => 'bca', 'BcaB02g09263' => 'bca', 'BcaB02g10453' => 'bca', 'BcaB05g22513' => 'bca', 'BcaB08g36253' => 'bca', 'BcaB08g36254' => 'bca', 'BcaC01g06519' => 'bca', 'BcaC02g11889' => 'bca', 'BcaC03g14010' => 'bca', 'BcaC03g18439' => 'bca', 'BcaC04g19765' => 'bca', 'BcaC09g48432' => 'bca', 'BcaNung07302' => 'bca', 'BolC2t06040H' => 'bol', 'BolC2t07346H' => 'bol', 'BolC3t13817H' => 'bol', 'BolC4t22625H' => 'bol', 'BolC4t23297H' => 'bol', 'BolC8t51278H' => 'bol', 'BolC9t58050H' => 'bol', 'BolC9t58051H' => 'bol', 'BolC9t60163H' => 'bol', 'BraA02t04712Z' => 'bra', 'BraA02t05791Z' => 'bra', 'BraA03t10483Z' => 'bra', 'BraA05t19795Z' => 'bra', 'BraA05t20276Z' => 'bra', 'BraA09t40827Z' => 'bra', 'BraA10t43750Z' => 'bra', 'BraA10t43751Z' => 'bra', 'BraA10t45370Z' => 'bra', 'C02p00400' => 'bna', 'C02p12460' => 'bna', 'C03p13680' => 'bna', 'C04p10270' => 'bna', 'C04p17500' => 'bna', 'C08p37010' => 'bna', 'C09p51880' => 'bna', 'C09p51890' => 'bna', 'C09p74300' => 'bna', 'CAN.G179.26' => 'can', 'CAN.G3384.1' => 'can', 'CAN.G394.68' => 'can', 'CAN.G907.13' => 'can', 'CANSAT11G0012' => 'cansat', 'CANSAT25G1586' => 'cansat', 'CANSAT35G0735' => 'cansat', 'CANSAT54G0556' => 'cansat', 'CANSAT64G0356' => 'cansat', 'CANSAT78G2042' => 'cansat', 'CARHR125920' => 'chi', 'CARHR131910' => 'chi', 'CARHR172390' => 'chi', 'CARHR211140' => 'chi', 'CARHR285850' => 'chi', 'CARHR285860' => 'chi', 'Carub.0004s1347' => 'cru', 'Carub.0004s1960' => 'cru', 'Carub.0005s2880' => 'cru', 'Carub.0006s0107' => 'cru', 'Carub.0008s2015' => 'cru', 'Carub.0008s2016' => 'cru', 'Carub.0008s2017' => 'cru', 'Ca_01315_v3' => 'car', 'Ca_05063_v3' => 'car', 'Ca_10231_v3' => 'car', 'Ca_10913_v3' => 'car', 'Ca_19156_v3' => 'car', 'Ca_23644_v3' => 'car', 'Ca_26735_v3' => 'car', 'Cc01_g13130' => 'ccan', 'Cc02_g21690' => 'ccan', 'Cc03_g03600' => 'ccan', 'Cc06_g02510' => 'ccan', 'CDE02G1265' => 'cde', 'CDE05G0415' => 'cde', 'CDE08G1082' => 'cde', 'Cfa005780' => 'cfa', 'Cfa011522' => 'cfa', 'Cfa011523' => 'cfa', 'Cfa015627' => 'cfa', 'Cfa017359' => 'cfa', 'Ciclev10005687m.g' => 'ccl', 'Ciclev10012173m.g' => 'ccl', 'Ciclev10021621m.g' => 'ccl', 'Ciclev10028968m.g' => 'ccl', 'Ciclev10029907m.g' => 'ccl', 'CiPaw.01G164800' => 'cil', 'CiPaw.07G083700' => 'cil', 'CiPaw.07G127000' => 'cil', 'CiPaw.07G136900' => 'cil', 'CiPaw.08G081700' => 'cil', 'CiPaw.09G194600' => 'cil', 'CiPaw.10G146500' => 'cil', 'CiPaw.13G091500' => 'cil', 'CiPaw.13G091600' => 'cil', 'ClCG00G003390' => 'cla', 'ClCG01G007220' => 'cla', 'ClCG03G001370' => 'cla', 'ClCG04G008100' => 'cla', 'ClCG06G006110' => 'cla', 'ClCG06G006130' => 'cla', 'ClCG10G021210' => 'cla', 'COL.COLO4_07648' => 'col', 'COL.COLO4_07650' => 'col', 'COL.COLO4_07651' => 'col', 'COL.COLO4_14780' => 'col', 'COL.COLO4_18546' => 'col', 'COL.COLO4_18547' => 'col', 'COL.COLO4_23103' => 'col', 'COL.COLO4_30419' => 'col', 'COL.COLO4_34232' => 'col', 'Cpa.g.sc169.20' => 'cpa', 'Cpa.g.sc57.45' => 'cpa', 'Cpa.g.sc58.124' => 'cpa', 'Cpa.g.sc58.125' => 'cpa', 'Cpa.g.sc81.118' => 'cpa', 'Cpa.g.sc81.119' => 'cpa', 'Cre12.g524700' => 'cre', 'CsaV3_1G034430' => 'csa', 'CsaV3_1G034440' => 'csa', 'CsaV3_1G034450' => 'csa', 'CsaV3_3G034830' => 'csa', 'CsaV3_4G025090' => 'csa', 'CsaV3_5G018660' => 'csa', 'CsaV3_6G038160' => 'csa', 'CSS0003447' => 'camsi', 'CSS0017840' => 'camsi', 'CSS0019260' => 'camsi', 'CSS0040375' => 'camsi', 'CSS0042533' => 'camsi', 'DCAR_005960' => 'dca', 'DCAR_012104' => 'dca', 'DCAR_012105' => 'dca', 'DCAR_012293' => 'dca', 'DCAR_015632' => 'dca', 'DCAR_024602' => 'dca', 'DCAR_028752' => 'dca', 'Dinv06261' => 'din', 'Dinv13982' => 'din', 'Dinv17029' => 'din', 'Dinv18463' => 'din', 'Dinv33181' => 'din', 'Dinv35585' => 'din', 'Dinv37161' => 'din', 'Dinv42977' => 'din', 'Dinv43122' => 'din', 'Dinv44517' => 'din', 'Duzib093G0256' => 'dzi', 'Duzib106G1254' => 'dzi', 'Duzib128G1789' => 'dzi', 'Duzib133G0633' => 'dzi', 'Duzib138G0510' => 'dzi', 'Duzib150G1084' => 'dzi', 'Duzib168G0488' => 'dzi', 'Duzib168G1523' => 'dzi', 'Duzib170G0133' => 'dzi', 'ECA234G1433' => 'eca', 'ECA236G1432' => 'eca', 'ECA236G2256' => 'eca', 'ECA236G2365' => 'eca', 'ECA236G4830' => 'eca', 'ECA248G1505' => 'eca', 'EL10Ac3g06431' => 'bvu', 'EL10Ac5g12577' => 'bvu', 'EL10Ac6g13533' => 'bvu', 'EL10Ac7g16045' => 'bvu', 'Eucgr.A01281' => 'egr', 'Eucgr.B02326' => 'egr', 'Eucgr.H03532' => 'egr', 'Eucgr.K00553' => 'egr', 'Eucgr.K03116' => 'egr', 'FAN02G3963' => 'fan', 'FAN05G0438' => 'fan', 'FAN09G2434' => 'fan', 'FAN12G3984' => 'fan', 'FAN14G0798' => 'fan', 'FAN17G0652' => 'fan', 'FAN19G1988' => 'fan', 'FAN22G0632' => 'fan', 'FAN23G0387' => 'fan', 'FAN26G1323' => 'fan', 'FAN28G0666' => 'fan', 'FvH4_1g26080' => 'fve', 'FvH4_3g36780' => 'fve', 'FvH4_4g15270' => 'fve', 'FvH4_6g13490' => 'fve', 'Glyma.01G098700' => 'gma', 'Glyma.03G065900' => 'gma', 'Glyma.03G073754' => 'gma', 'Glyma.03G073758' => 'gma', 'Glyma.03G083200' => 'gma', 'Glyma.03G225500' => 'gma', 'Glyma.05G037766' => 'gma', 'Glyma.07G133500' => 'gma', 'Glyma.10G139400' => 'gma', 'Glyma.10G248900' => 'gma', 'Glyma.11G137800' => 'gma', 'Glyma.12G061300' => 'gma', 'Glyma.13G337900' => 'gma', 'Glyma.15G036600' => 'gma', 'Glyma.18G182800' => 'gma', 'Glyma.19G222500' => 'gma', 'Glyma.20G144800' => 'gma', 'Gohir.A01G222000' => 'ghi', 'Gohir.A03G044000' => 'ghi', 'Gohir.A03G044100' => 'ghi', 'Gohir.A04G083100' => 'ghi', 'Gohir.A07G127200' => 'ghi', 'Gohir.A07G132400' => 'ghi', 'Gohir.A08G000700' => 'ghi', 'Gohir.A11G327300' => 'ghi', 'Gohir.D01G211500' => 'ghi', 'Gohir.D03G123400' => 'ghi', 'Gohir.D03G123500' => 'ghi', 'Gohir.D04G121800' => 'ghi', 'Gohir.D07G131500' => 'ghi', 'Gohir.D07G136600' => 'ghi', 'Gohir.D08G011600' => 'ghi', 'Gohir.D11G346200' => 'ghi', 'Gorai.001G142800' => 'gra', 'Gorai.001G148700' => 'gra', 'Gorai.002G257300' => 'gra', 'Gorai.003G130000' => 'gra', 'Gorai.003G130100' => 'gra', 'Gorai.004G005300' => 'gra', 'Gorai.007G376500' => 'gra', 'Gorai.012G104700' => 'gra', 'GSVIVG01017946001' => 'vvi', 'GSVIVG01024928001' => 'vvi', 'GSVIVG01028227001' => 'vvi', 'GSVIVG01034151001' => 'vvi', 'HanXRQChr05g0135031' => 'han', 'HanXRQChr05g0135041' => 'han', 'HanXRQChr05g0140021' => 'han', 'HanXRQChr06g0178981' => 'han', 'HanXRQChr07g0188251' => 'han', 'HanXRQChr08g0235311' => 'han', 'HanXRQChr09g0271011' => 'han', 'HanXRQChr10g0293321' => 'han', 'HanXRQChr13g0388171' => 'han', 'Haze_00916' => 'cav', 'Haze_05063' => 'cav', 'Haze_20814' => 'cav', 'Haze_24128' => 'cav', 'Hma1.2p1_0745F.1_g212010' => 'hma', 'Hma1.2p1_0757F.1_g213260' => 'hma', 'Hma1.2p1_0936F.1_g238840' => 'hma', 'Hma1.2p1_1735F.1_g299890' => 'hma', 'Hma1.2p1_1861F.1_g305685' => 'hma', 'HPP92_003397' => 'vpl', 'HPP92_012597' => 'vpl', 'HPP92_015520' => 'vpl', 'HPP92_015539' => 'vpl', 'HPP92_020373' => 'vpl', 'Hund04938' => 'sun', 'Hund10677' => 'sun', 'Hund11033' => 'sun', 'Hund12155' => 'sun', 'Lalb_Chr01g0022551' => 'lal', 'Lalb_Chr03g0042341' => 'lal', 'Lalb_Chr07g0192931' => 'lal', 'Lalb_Chr12g0209551' => 'lal', 'Lalb_Chr19g0125251' => 'lal', 'Lalb_Chr19g0137891' => 'lal', 'Lalb_Chr21g0304641' => 'lal', 'Lalb_Chr21g0309881' => 'lal', 'Lj1A5T12' => 'lonja', 'Lj1C148G10' => 'lonja', 'Lj2A93T83' => 'lonja', 'Lj3A738G68' => 'lonja', 'Lj3C966T1' => 'lonja', 'Lj3g0018958' => 'lja', 'Lj3g0021831' => 'lja', 'Lj3g0025443' => 'lja', 'Lj4g0026809' => 'lja', 'Lj5g0012558' => 'lja', 'Lj5g0021586' => 'lja', 'Lsat_1_v5_gn_5_156840' => 'lsa', 'Lsat_1_v5_gn_8_73460' => 'lsa', 'Lsat_1_v5_gn_8_73481' => 'lsa', 'Lsat_1_v5_gn_9_31601' => 'lsa', 'Lsat_1_v5_gn_9_77320' => 'lsa', 'Manes.01G171300' => 'mes', 'Manes.01G171400' => 'mes', 'Manes.01G236100' => 'mes', 'Manes.02G130500' => 'mes', 'Manes.02G130600' => 'mes', 'Manes.03G180200' => 'mes', 'Manes.05G007000' => 'mes', 'Manes.08G084400' => 'mes', 'Manes.09G092600' => 'mes', 'Manes.15G027900' => 'mes', 'MBI04_g40948_MAGBIO' => 'mbi', 'MBI14_g12123_MAGBIO' => 'mbi', 'MBI18_g28915_MAGBIO' => 'mbi', 'MCO09G053' => 'mco', 'MCO11G782' => 'mco', 'MCO15G215' => 'mco', 'MD03G1088500' => 'mdo', 'MD03G1088600' => 'mdo', 'MD04G1130800' => 'mdo', 'MD09G1291700' => 'mdo', 'MD11G1097500' => 'mdo', 'MD11G1097600' => 'mdo', 'MD12G1143900' => 'mdo', 'MD13G1191400' => 'mdo', 'MD16G1191500' => 'mdo', 'Medtr1g085570' => 'mtr', 'Medtr1g104610' => 'mtr', 'Medtr2g097520' => 'mtr', 'Medtr4g021800' => 'mtr', 'Medtr4g021825' => 'mtr', 'Medtr4g064270' => 'mtr', 'Medtr4g064380' => 'mtr', 'Medtr7g062150' => 'mtr', 'MELO3C003138.2' => 'cme', 'MELO3C005187.2' => 'cme', 'MELO3C009252.2' => 'cme', 'MELO3C014481.2' => 'cme', 'MELO3C020616.2' => 'cme', 'MELO3C020617.2' => 'cme', 'MELO3C020618.2' => 'cme', 'Migut.G00328' => 'egut', 'Migut.J00320' => 'egut', 'Migut.L01000' => 'egut', 'Migut.L01953' => 'egut', 'MSTRG.10253' => 'ama', 'MSTRG.19077' => 'ama', 'MSTRG.26780' => 'ama', 'MSTRG.4023' => 'ama', 'MSTRG.5655' => 'ama', 'MSTRG.9992' => 'ama', 'Nitab4.5_0000043g0310' => 'nta', 'Nitab4.5_0000463g0080' => 'nta', 'Nitab4.5_0000705g0170' => 'nta', 'Nitab4.5_0001326g0060' => 'nta', 'Nitab4.5_0001628g0030' => 'nta', 'Nitab4.5_0002103g0110' => 'nta', 'Nitab4.5_0002946g0030' => 'nta', 'Nitab4.5_0004639g0030' => 'nta', 'Nn2g11149' => 'nnu', 'Nn2g13389' => 'nnu', 'Nn4g25326' => 'nnu', 'Nn4g26290' => 'nnu', 'Nn5g29865' => 'nnu', 'Oeu004163.1' => 'oeu', 'Oeu006901.1' => 'oeu', 'Oeu010096.1' => 'oeu', 'Oeu024340.1' => 'oeu', 'Oeu048369.1' => 'oeu', 'Os01g0973000' => 'osa', 'Os03g0273800' => 'osa', 'Os03g0701200' => 'osa', 'Os03g0834050' => 'osa', 'Os07g0634400' => 'osa', 'Peaxi162Scf00092g01414' => 'pax', 'Peaxi162Scf00165g00818' => 'pax', 'Peaxi162Scf00309g00516' => 'pax', 'Peaxi162Scf00774g00218' => 'pax', 'PGR004G1824' => 'pgr', 'PGR004G2606' => 'pgr', 'PGR031G2716' => 'pgr', 'PGR102G2460' => 'pgr', 'PGR142G2599' => 'pgr', 'PGSC0003DMG400000843' => 'stu', 'PGSC0003DMG400008829' => 'stu', 'PGSC0003DMG400030418' => 'stu', 'PGSC0003DMG400031834' => 'stu', 'PGSC0003DMG401028300' => 'stu', 'PGSC0003DMG402028300' => 'stu', 'Phvul.001G219300' => 'pvu', 'Phvul.007G056000' => 'pvu', 'Phvul.007G208000' => 'pvu', 'Phvul.008G119500' => 'pvu', 'Phvul.010G011200' => 'pvu', 'Phvul.010G014800' => 'pvu', 'Phvul.011G062900' => 'pvu', 'Phvul.L007043' => 'pvu', 'Potri.001G242300' => 'ptr', 'Potri.002G185300' => 'ptr', 'Potri.006G086900' => 'ptr', 'Potri.008G151700' => 'ptr', 'Potri.009G033500' => 'ptr', 'Potri.010G089300' => 'ptr', 'Potri.014G110800' => 'ptr', 'Pp3c27_8130' => 'ppa', 'Pp3c6_27410' => 'ppa', 'PRCOL_00001659' => 'pco', 'PRCOL_00001927' => 'pco', 'PRCOL_00003649' => 'pco', 'Prupe.1G011600' => 'ppe', 'Prupe.3G000800' => 'ppe', 'Prupe.3G001100' => 'ppe', 'Prupe.6G072700' => 'ppe', 'Prupe.6G072800' => 'ppe', 'Prupe.6G257300' => 'ppe', 'Prupe.8G033000' => 'ppe', 'Psat0s2633g0080' => 'psa', 'Psat0s3396g0080' => 'psa', 'Psat0s3396g0200' => 'psa', 'Psat3g139080' => 'psa', 'Psat5g285080' => 'psa', 'Psat6g157760' => 'psa', 'Psat6g208440' => 'psa', 'Psat7g215320' => 'psa', 'Psat7g215400' => 'psa', 'Psat7g235600' => 'psa', 'Psat7g235760' => 'psa', 'PSO063G4603' => 'pso', 'PSO210G0182' => 'pso', 'PSO210G0196' => 'pso', 'PSO339G0394' => 'pso', 'PSO339G4127' => 'pso', 'PSO513G0064' => 'pso', 'PSO761G0079' => 'pso', 'QL01p031003' => 'qlo', 'QL01p031078' => 'qlo', 'QL06p003004' => 'qlo', 'QL07p048731' => 'qlo', 'QL09p037427' => 'qlo', 'RcHm_v2.0_Chr3g0466361' => 'rch', 'RcHm_v2.0_Chr3g0485571' => 'rch', 'RcHm_v2.0_Chr4g0416551' => 'rch', 'RcHm_v2.0_Chr5g0065831' => 'rch', 'Rhsim01G0230500' => 'rsi', 'Rhsim05G0194000' => 'rsi', 'Rhsim08G0250400' => 'rsi', 'Sabra02G0131000' => 'sbr', 'Sabra06G0066300' => 'sbr', 'Sabra08G0115500' => 'sbr', 'Sabra09G0023900' => 'sbr', 'Sabra10G0054000' => 'sbr', 'Sabra14G0081500' => 'sbr', 'Sabra16G0147100' => 'sbr', 'SalBow2G2957' => 'sbo', 'SalBow4G3320' => 'sbo', 'SalBow8G1894' => 'sbo', 'Sc07g0007950' => 'sci', 'Sc12g0001360' => 'sci', 'Sc13g0004330' => 'sci', 'Sc20g0005010' => 'sci', 'Sed0000361' => 'sed', 'Sed0001706' => 'sed', 'Sed0002422' => 'sed', 'Sed0004029' => 'sed', 'Sed0004602' => 'sed', 'Sed0004943' => 'sed', 'Sed0008646' => 'sed', 'Sed0023313' => 'sed', 'Sed0024843' => 'sed', 'SEGI_00081' => 'sgi', 'SEGI_00947' => 'sgi', 'SEGI_04046' => 'sgi', 'SEGI_06880' => 'sgi', 'SEGI_09736' => 'sgi', 'SEGI_12741' => 'sgi', 'SEGI_14530' => 'sgi', 'SEGI_20705' => 'sgi', 'SEGI_26088' => 'sgi', 'SEGI_28323' => 'sgi', 'SEGI_33343' => 'sgi', 'SGA_v2.0_scaffold126G33775' => 'sas', 'SGA_v2.0_scaffold2G01337' => 'sas', 'SGA_v2.0_scaffold38G15006' => 'sas', 'SGA_v2.0_scaffold39G15264' => 'sas', 'SGA_v2.0_scaffold453G51880' => 'sas', 'SHI12696' => 'shi', 'SMO367G1096' => 'smo', 'Solyc01g068630.3' => 'sly', 'Solyc05g011880.3' => 'sly', 'Solyc06g076300.3' => 'sly', 'Solyc09g010940.4' => 'sly', 'Solyc09g075890.3' => 'sly', 'Sopen01g030560' => 'spe', 'Sopen05g006630' => 'spe', 'Sopen06g032720' => 'spe', 'Sopen09g005660' => 'spe', 'Sopen09g030690' => 'spe', 'Sp4g14540' => 'spa', 'Sp4g20030' => 'spa', 'Sp5g01320' => 'spa', 'Sp6g21170' => 'spa', 'Sp6g21180' => 'spa', 'Sp6g21190' => 'spa', 'Sp6g40220' => 'spa', 'TAR362G0122' => 'tar', 'TAR362G1338' => 'tar', 'TAR369G0590' => 'tar', 'TAR371G0824' => 'tar', 'TAR622G1429' => 'tar', 'TAR623G0734' => 'tar', 'TAR625G0441' => 'tar', 'TAR629G0976' => 'tar', 'TAR633G1195' => 'tar', 'TAR636G2660' => 'tar', 'THA.LOC104799440' => 'tha', 'THA.LOC104800966' => 'tha', 'THA.LOC104806559' => 'tha', 'THA.LOC104810765' => 'tha', 'THA.LOC104816266' => 'tha', 'THA.LOC104817419' => 'tha', 'THA.LOC104827021' => 'tha', 'Thecc.01G327400' => 'tca', 'Thecc.04G229200' => 'tca', 'Thecc.05G037400' => 'tca', 'Thecc.09G318600' => 'tca', 'Thecc.09G318700' => 'tca', 'Thhalv10006238m.g' => 'esa', 'Thhalv10014321m.g' => 'esa', 'Thhalv10014335m.g' => 'esa', 'Thhalv10015826m.g' => 'esa', 'Thhalv10017107m.g' => 'esa', 'Thhalv10017180m.g' => 'esa', 'Thhalv10029339m.g' => 'esa', 'TPR.G1699' => 'tpr', 'TPR.G23609' => 'tpr', 'TPR.G3081' => 'tpr', 'TPR.G40397' => 'tpr', 'TPR.G5522' => 'tpr', 'TPR.G5618' => 'tpr', 'TPR.G5626' => 'tpr', 'TWI09G1632' => 'twi', 'TWI23G1230' => 'twi', 'TWI53G1064' => 'twi', 'TWI59G0751' => 'twi', 'TWI74G0947' => 'twi', 'TWI77G0337' => 'twi', 'TWI79G1254' => 'twi', 'unitig_0.g2341' => 'ugi', 'unitig_26.g10006' => 'ugi', 'unitig_26.g10008' => 'ugi', 'unitig_26.g9192' => 'ugi', 'vmacro14547' => 'vma', 'vmacro15333' => 'vma', 'vmacro18743' => 'vma', 'vmacro20166' => 'vma', 'VMungo0331G0523' => 'vmu', 'VMungo0331G1202' => 'vmu', 'VMungo0720G1228' => 'vmu', 'VMungo0720G1514' => 'vmu', 'VMungo1080G0169' => 'vmu', 'VMungo1127G1475' => 'vmu', 'VMungo1383G1208' => 'vmu', 'VMungo1383G1698' => 'vmu', 'Zm00001eb012270' => 'zma', 'Zm00001eb054100' => 'zma', 'Zm00001eb063350' => 'zma', 'Zm00001eb328560' => 'zma', 'Zm00001eb342820' => 'zma', 'Zm00001eb362210' => 'zma', 'Zm00001eb397730' => 'zma', 'Zm00001eb399750' => 'zma' ) $gf_id = 'HOM05D000959' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000959' ) $data_identifier = 'HOM05D000959' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 5, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 5, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 10, 'mbi' => (int) 3, 'mco' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 2, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 3, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 11, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399750' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000959', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '622', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p07100' => 'bna', 'A03p11720' => 'bna', 'A05p08300' => 'bna', 'A05p13380' => 'bna', 'A09p54130' => 'bna', 'A10p16690' => 'bna', 'A10p16700' => 'bna', 'A10p33390' => 'bna', 'Aa31LG10G16020' => 'aar', 'Aa31LG1G11810' => 'aar', 'Aa31LG1G11830' => 'aar', 'Aa31LG1G22510' => 'aar', 'Aa31LG5G4890' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5793' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2310' => 'aag', 'Actinidia08499' => 'ach', 'Actinidia11262' => 'ach', 'Actinidia23926' => 'ach', 'Actinidia34420' => 'ach', 'Actinidia36970' => 'ach', 'Ah.02g111220' => 'amhyb', 'Ah.15g097750' => 'amhyb', 'AL4G27500' => 'aly', 'AL6G11470' => 'aly', 'AL8G35950' => 'aly', 'AL8G35960' => 'aly', 'AL8G35970' => 'aly', 'Aqoxy1G00912' => 'aox', 'Aqoxy2G02253' => 'aox', 'Aqoxy2G02411' => 'aox', 'Aqoxy5G00485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BZ66YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K8ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM4FUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6BF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HFV7XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25JBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0YNNV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MAKK6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P70IT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP2Z6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V61LZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YWP64R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3S9AI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7PGHH' => 'arhy', 'AT2G32150' => 'ath', 'AT3G62040' => 'ath', 'AT5G02230' => 'ath', 'AT5G59480' => 'ath', 'AT5G59490' => 'ath', 'ATR0332G060' => 'atr', 'ATR0559G190' => 'atr', 'ATR0693G294' => 'atr', 'Atru.chr3.3975' => 'acertr', 'Atru.chr3.3976' => 'acertr', 'Atru.chr3.3977' => 'acertr', 'Atru.chr4.2498' => 'acertr', 'Atru.chr5.838' => 'acertr', 'Atru.chr8.1990' => 'acertr', 'Atru.chr8.1991' => 'acertr', 'Atru.chr8.1992' => 'acertr', 'AUR62001759' => 'cqu', 'AUR62009545' => 'cqu', 'AUR62010474' => 'cqu', 'AUR62025820' => 'cqu', 'AUR62030422' => 'cqu', 'AUR62033605' => 'cqu', 'AUR62038615' => 'cqu', 'AUR62041347' => 'cqu', 'BcaB01g04574' => 'bca', 'BcaB02g09263' => 'bca', 'BcaB02g10453' => 'bca', 'BcaB05g22513' => 'bca', 'BcaB08g36253' => 'bca', 'BcaB08g36254' => 'bca', 'BcaC01g06519' => 'bca', 'BcaC02g11889' => 'bca', 'BcaC03g14010' => 'bca', 'BcaC03g18439' => 'bca', 'BcaC04g19765' => 'bca', 'BcaC09g48432' => 'bca', 'BcaNung07302' => 'bca', 'BolC2t06040H' => 'bol', 'BolC2t07346H' => 'bol', 'BolC3t13817H' => 'bol', 'BolC4t22625H' => 'bol', 'BolC4t23297H' => 'bol', 'BolC8t51278H' => 'bol', 'BolC9t58050H' => 'bol', 'BolC9t58051H' => 'bol', 'BolC9t60163H' => 'bol', 'BraA02t04712Z' => 'bra', 'BraA02t05791Z' => 'bra', 'BraA03t10483Z' => 'bra', 'BraA05t19795Z' => 'bra', 'BraA05t20276Z' => 'bra', 'BraA09t40827Z' => 'bra', 'BraA10t43750Z' => 'bra', 'BraA10t43751Z' => 'bra', 'BraA10t45370Z' => 'bra', 'C02p00400' => 'bna', 'C02p12460' => 'bna', 'C03p13680' => 'bna', 'C04p10270' => 'bna', 'C04p17500' => 'bna', 'C08p37010' => 'bna', 'C09p51880' => 'bna', 'C09p51890' => 'bna', 'C09p74300' => 'bna', 'CAN.G179.26' => 'can', 'CAN.G3384.1' => 'can', 'CAN.G394.68' => 'can', 'CAN.G907.13' => 'can', 'CANSAT11G0012' => 'cansat', 'CANSAT25G1586' => 'cansat', 'CANSAT35G0735' => 'cansat', 'CANSAT54G0556' => 'cansat', 'CANSAT64G0356' => 'cansat', 'CANSAT78G2042' => 'cansat', 'CARHR125920' => 'chi', 'CARHR131910' => 'chi', 'CARHR172390' => 'chi', 'CARHR211140' => 'chi', 'CARHR285850' => 'chi', 'CARHR285860' => 'chi', 'Carub.0004s1347' => 'cru', 'Carub.0004s1960' => 'cru', 'Carub.0005s2880' => 'cru', 'Carub.0006s0107' => 'cru', 'Carub.0008s2015' => 'cru', 'Carub.0008s2016' => 'cru', 'Carub.0008s2017' => 'cru', 'Ca_01315_v3' => 'car', 'Ca_05063_v3' => 'car', 'Ca_10231_v3' => 'car', 'Ca_10913_v3' => 'car', 'Ca_19156_v3' => 'car', 'Ca_23644_v3' => 'car', 'Ca_26735_v3' => 'car', 'Cc01_g13130' => 'ccan', 'Cc02_g21690' => 'ccan', 'Cc03_g03600' => 'ccan', 'Cc06_g02510' => 'ccan', 'CDE02G1265' => 'cde', 'CDE05G0415' => 'cde', 'CDE08G1082' => 'cde', 'Cfa005780' => 'cfa', 'Cfa011522' => 'cfa', 'Cfa011523' => 'cfa', 'Cfa015627' => 'cfa', 'Cfa017359' => 'cfa', 'Ciclev10005687m.g' => 'ccl', 'Ciclev10012173m.g' => 'ccl', 'Ciclev10021621m.g' => 'ccl', 'Ciclev10028968m.g' => 'ccl', 'Ciclev10029907m.g' => 'ccl', 'CiPaw.01G164800' => 'cil', 'CiPaw.07G083700' => 'cil', 'CiPaw.07G127000' => 'cil', 'CiPaw.07G136900' => 'cil', 'CiPaw.08G081700' => 'cil', 'CiPaw.09G194600' => 'cil', 'CiPaw.10G146500' => 'cil', 'CiPaw.13G091500' => 'cil', 'CiPaw.13G091600' => 'cil', 'ClCG00G003390' => 'cla', 'ClCG01G007220' => 'cla', 'ClCG03G001370' => 'cla', 'ClCG04G008100' => 'cla', 'ClCG06G006110' => 'cla', 'ClCG06G006130' => 'cla', 'ClCG10G021210' => 'cla', 'COL.COLO4_07648' => 'col', 'COL.COLO4_07650' => 'col', 'COL.COLO4_07651' => 'col', 'COL.COLO4_14780' => 'col', 'COL.COLO4_18546' => 'col', 'COL.COLO4_18547' => 'col', 'COL.COLO4_23103' => 'col', 'COL.COLO4_30419' => 'col', 'COL.COLO4_34232' => 'col', 'Cpa.g.sc169.20' => 'cpa', 'Cpa.g.sc57.45' => 'cpa', 'Cpa.g.sc58.124' => 'cpa', 'Cpa.g.sc58.125' => 'cpa', 'Cpa.g.sc81.118' => 'cpa', 'Cpa.g.sc81.119' => 'cpa', 'Cre12.g524700' => 'cre', 'CsaV3_1G034430' => 'csa', 'CsaV3_1G034440' => 'csa', 'CsaV3_1G034450' => 'csa', 'CsaV3_3G034830' => 'csa', 'CsaV3_4G025090' => 'csa', 'CsaV3_5G018660' => 'csa', 'CsaV3_6G038160' => 'csa', 'CSS0003447' => 'camsi', 'CSS0017840' => 'camsi', 'CSS0019260' => 'camsi', 'CSS0040375' => 'camsi', 'CSS0042533' => 'camsi', 'DCAR_005960' => 'dca', 'DCAR_012104' => 'dca', 'DCAR_012105' => 'dca', 'DCAR_012293' => 'dca', 'DCAR_015632' => 'dca', 'DCAR_024602' => 'dca', 'DCAR_028752' => 'dca', 'Dinv06261' => 'din', 'Dinv13982' => 'din', 'Dinv17029' => 'din', 'Dinv18463' => 'din', 'Dinv33181' => 'din', 'Dinv35585' => 'din', 'Dinv37161' => 'din', 'Dinv42977' => 'din', 'Dinv43122' => 'din', 'Dinv44517' => 'din', 'Duzib093G0256' => 'dzi', 'Duzib106G1254' => 'dzi', 'Duzib128G1789' => 'dzi', 'Duzib133G0633' => 'dzi', 'Duzib138G0510' => 'dzi', 'Duzib150G1084' => 'dzi', 'Duzib168G0488' => 'dzi', 'Duzib168G1523' => 'dzi', 'Duzib170G0133' => 'dzi', 'ECA234G1433' => 'eca', 'ECA236G1432' => 'eca', 'ECA236G2256' => 'eca', 'ECA236G2365' => 'eca', 'ECA236G4830' => 'eca', 'ECA248G1505' => 'eca', 'EL10Ac3g06431' => 'bvu', 'EL10Ac5g12577' => 'bvu', 'EL10Ac6g13533' => 'bvu', 'EL10Ac7g16045' => 'bvu', 'Eucgr.A01281' => 'egr', 'Eucgr.B02326' => 'egr', 'Eucgr.H03532' => 'egr', 'Eucgr.K00553' => 'egr', 'Eucgr.K03116' => 'egr', 'FAN02G3963' => 'fan', 'FAN05G0438' => 'fan', 'FAN09G2434' => 'fan', 'FAN12G3984' => 'fan', 'FAN14G0798' => 'fan', 'FAN17G0652' => 'fan', 'FAN19G1988' => 'fan', 'FAN22G0632' => 'fan', 'FAN23G0387' => 'fan', 'FAN26G1323' => 'fan', 'FAN28G0666' => 'fan', 'FvH4_1g26080' => 'fve', 'FvH4_3g36780' => 'fve', 'FvH4_4g15270' => 'fve', 'FvH4_6g13490' => 'fve', 'Glyma.01G098700' => 'gma', 'Glyma.03G065900' => 'gma', 'Glyma.03G073754' => 'gma', 'Glyma.03G073758' => 'gma', 'Glyma.03G083200' => 'gma', 'Glyma.03G225500' => 'gma', 'Glyma.05G037766' => 'gma', 'Glyma.07G133500' => 'gma', 'Glyma.10G139400' => 'gma', 'Glyma.10G248900' => 'gma', 'Glyma.11G137800' => 'gma', 'Glyma.12G061300' => 'gma', 'Glyma.13G337900' => 'gma', 'Glyma.15G036600' => 'gma', 'Glyma.18G182800' => 'gma', 'Glyma.19G222500' => 'gma', 'Glyma.20G144800' => 'gma', 'Gohir.A01G222000' => 'ghi', 'Gohir.A03G044000' => 'ghi', 'Gohir.A03G044100' => 'ghi', 'Gohir.A04G083100' => 'ghi', 'Gohir.A07G127200' => 'ghi', 'Gohir.A07G132400' => 'ghi', 'Gohir.A08G000700' => 'ghi', 'Gohir.A11G327300' => 'ghi', 'Gohir.D01G211500' => 'ghi', 'Gohir.D03G123400' => 'ghi', 'Gohir.D03G123500' => 'ghi', 'Gohir.D04G121800' => 'ghi', 'Gohir.D07G131500' => 'ghi', 'Gohir.D07G136600' => 'ghi', 'Gohir.D08G011600' => 'ghi', 'Gohir.D11G346200' => 'ghi', 'Gorai.001G142800' => 'gra', 'Gorai.001G148700' => 'gra', 'Gorai.002G257300' => 'gra', 'Gorai.003G130000' => 'gra', 'Gorai.003G130100' => 'gra', 'Gorai.004G005300' => 'gra', 'Gorai.007G376500' => 'gra', 'Gorai.012G104700' => 'gra', 'GSVIVG01017946001' => 'vvi', 'GSVIVG01024928001' => 'vvi', 'GSVIVG01028227001' => 'vvi', 'GSVIVG01034151001' => 'vvi', 'HanXRQChr05g0135031' => 'han', 'HanXRQChr05g0135041' => 'han', 'HanXRQChr05g0140021' => 'han', 'HanXRQChr06g0178981' => 'han', 'HanXRQChr07g0188251' => 'han', 'HanXRQChr08g0235311' => 'han', 'HanXRQChr09g0271011' => 'han', 'HanXRQChr10g0293321' => 'han', 'HanXRQChr13g0388171' => 'han', 'Haze_00916' => 'cav', 'Haze_05063' => 'cav', 'Haze_20814' => 'cav', 'Haze_24128' => 'cav', 'Hma1.2p1_0745F.1_g212010' => 'hma', 'Hma1.2p1_0757F.1_g213260' => 'hma', 'Hma1.2p1_0936F.1_g238840' => 'hma', 'Hma1.2p1_1735F.1_g299890' => 'hma', 'Hma1.2p1_1861F.1_g305685' => 'hma', 'HPP92_003397' => 'vpl', 'HPP92_012597' => 'vpl', 'HPP92_015520' => 'vpl', 'HPP92_015539' => 'vpl', 'HPP92_020373' => 'vpl', 'Hund04938' => 'sun', 'Hund10677' => 'sun', 'Hund11033' => 'sun', 'Hund12155' => 'sun', 'Lalb_Chr01g0022551' => 'lal', 'Lalb_Chr03g0042341' => 'lal', 'Lalb_Chr07g0192931' => 'lal', 'Lalb_Chr12g0209551' => 'lal', 'Lalb_Chr19g0125251' => 'lal', 'Lalb_Chr19g0137891' => 'lal', 'Lalb_Chr21g0304641' => 'lal', 'Lalb_Chr21g0309881' => 'lal', 'Lj1A5T12' => 'lonja', 'Lj1C148G10' => 'lonja', 'Lj2A93T83' => 'lonja', 'Lj3A738G68' => 'lonja', 'Lj3C966T1' => 'lonja', 'Lj3g0018958' => 'lja', 'Lj3g0021831' => 'lja', 'Lj3g0025443' => 'lja', 'Lj4g0026809' => 'lja', 'Lj5g0012558' => 'lja', 'Lj5g0021586' => 'lja', 'Lsat_1_v5_gn_5_156840' => 'lsa', 'Lsat_1_v5_gn_8_73460' => 'lsa', 'Lsat_1_v5_gn_8_73481' => 'lsa', 'Lsat_1_v5_gn_9_31601' => 'lsa', 'Lsat_1_v5_gn_9_77320' => 'lsa', 'Manes.01G171300' => 'mes', 'Manes.01G171400' => 'mes', 'Manes.01G236100' => 'mes', 'Manes.02G130500' => 'mes', 'Manes.02G130600' => 'mes', 'Manes.03G180200' => 'mes', 'Manes.05G007000' => 'mes', 'Manes.08G084400' => 'mes', 'Manes.09G092600' => 'mes', 'Manes.15G027900' => 'mes', 'MBI04_g40948_MAGBIO' => 'mbi', 'MBI14_g12123_MAGBIO' => 'mbi', 'MBI18_g28915_MAGBIO' => 'mbi', 'MCO09G053' => 'mco', 'MCO11G782' => 'mco', 'MCO15G215' => 'mco', 'MD03G1088500' => 'mdo', 'MD03G1088600' => 'mdo', 'MD04G1130800' => 'mdo', 'MD09G1291700' => 'mdo', 'MD11G1097500' => 'mdo', 'MD11G1097600' => 'mdo', 'MD12G1143900' => 'mdo', 'MD13G1191400' => 'mdo', 'MD16G1191500' => 'mdo', 'Medtr1g085570' => 'mtr', 'Medtr1g104610' => 'mtr', 'Medtr2g097520' => 'mtr', 'Medtr4g021800' => 'mtr', 'Medtr4g021825' => 'mtr', 'Medtr4g064270' => 'mtr', 'Medtr4g064380' => 'mtr', 'Medtr7g062150' => 'mtr', 'MELO3C003138.2' => 'cme', 'MELO3C005187.2' => 'cme', 'MELO3C009252.2' => 'cme', 'MELO3C014481.2' => 'cme', 'MELO3C020616.2' => 'cme', 'MELO3C020617.2' => 'cme', 'MELO3C020618.2' => 'cme', 'Migut.G00328' => 'egut', 'Migut.J00320' => 'egut', 'Migut.L01000' => 'egut', 'Migut.L01953' => 'egut', 'MSTRG.10253' => 'ama', 'MSTRG.19077' => 'ama', 'MSTRG.26780' => 'ama', 'MSTRG.4023' => 'ama', 'MSTRG.5655' => 'ama', 'MSTRG.9992' => 'ama', 'Nitab4.5_0000043g0310' => 'nta', 'Nitab4.5_0000463g0080' => 'nta', 'Nitab4.5_0000705g0170' => 'nta', 'Nitab4.5_0001326g0060' => 'nta', 'Nitab4.5_0001628g0030' => 'nta', 'Nitab4.5_0002103g0110' => 'nta', 'Nitab4.5_0002946g0030' => 'nta', 'Nitab4.5_0004639g0030' => 'nta', 'Nn2g11149' => 'nnu', 'Nn2g13389' => 'nnu', 'Nn4g25326' => 'nnu', 'Nn4g26290' => 'nnu', 'Nn5g29865' => 'nnu', 'Oeu004163.1' => 'oeu', 'Oeu006901.1' => 'oeu', 'Oeu010096.1' => 'oeu', 'Oeu024340.1' => 'oeu', 'Oeu048369.1' => 'oeu', 'Os01g0973000' => 'osa', 'Os03g0273800' => 'osa', 'Os03g0701200' => 'osa', 'Os03g0834050' => 'osa', 'Os07g0634400' => 'osa', 'Peaxi162Scf00092g01414' => 'pax', 'Peaxi162Scf00165g00818' => 'pax', 'Peaxi162Scf00309g00516' => 'pax', 'Peaxi162Scf00774g00218' => 'pax', 'PGR004G1824' => 'pgr', 'PGR004G2606' => 'pgr', 'PGR031G2716' => 'pgr', 'PGR102G2460' => 'pgr', 'PGR142G2599' => 'pgr', 'PGSC0003DMG400000843' => 'stu', 'PGSC0003DMG400008829' => 'stu', 'PGSC0003DMG400030418' => 'stu', 'PGSC0003DMG400031834' => 'stu', 'PGSC0003DMG401028300' => 'stu', 'PGSC0003DMG402028300' => 'stu', 'Phvul.001G219300' => 'pvu', 'Phvul.007G056000' => 'pvu', 'Phvul.007G208000' => 'pvu', 'Phvul.008G119500' => 'pvu', 'Phvul.010G011200' => 'pvu', 'Phvul.010G014800' => 'pvu', 'Phvul.011G062900' => 'pvu', 'Phvul.L007043' => 'pvu', 'Potri.001G242300' => 'ptr', 'Potri.002G185300' => 'ptr', 'Potri.006G086900' => 'ptr', 'Potri.008G151700' => 'ptr', 'Potri.009G033500' => 'ptr', 'Potri.010G089300' => 'ptr', 'Potri.014G110800' => 'ptr', 'Pp3c27_8130' => 'ppa', 'Pp3c6_27410' => 'ppa', 'PRCOL_00001659' => 'pco', 'PRCOL_00001927' => 'pco', 'PRCOL_00003649' => 'pco', 'Prupe.1G011600' => 'ppe', 'Prupe.3G000800' => 'ppe', 'Prupe.3G001100' => 'ppe', 'Prupe.6G072700' => 'ppe', 'Prupe.6G072800' => 'ppe', 'Prupe.6G257300' => 'ppe', 'Prupe.8G033000' => 'ppe', 'Psat0s2633g0080' => 'psa', 'Psat0s3396g0080' => 'psa', 'Psat0s3396g0200' => 'psa', 'Psat3g139080' => 'psa', 'Psat5g285080' => 'psa', 'Psat6g157760' => 'psa', 'Psat6g208440' => 'psa', 'Psat7g215320' => 'psa', 'Psat7g215400' => 'psa', 'Psat7g235600' => 'psa', 'Psat7g235760' => 'psa', 'PSO063G4603' => 'pso', 'PSO210G0182' => 'pso', 'PSO210G0196' => 'pso', 'PSO339G0394' => 'pso', 'PSO339G4127' => 'pso', 'PSO513G0064' => 'pso', 'PSO761G0079' => 'pso', 'QL01p031003' => 'qlo', 'QL01p031078' => 'qlo', 'QL06p003004' => 'qlo', 'QL07p048731' => 'qlo', 'QL09p037427' => 'qlo', 'RcHm_v2.0_Chr3g0466361' => 'rch', 'RcHm_v2.0_Chr3g0485571' => 'rch', 'RcHm_v2.0_Chr4g0416551' => 'rch', 'RcHm_v2.0_Chr5g0065831' => 'rch', 'Rhsim01G0230500' => 'rsi', 'Rhsim05G0194000' => 'rsi', 'Rhsim08G0250400' => 'rsi', 'Sabra02G0131000' => 'sbr', 'Sabra06G0066300' => 'sbr', 'Sabra08G0115500' => 'sbr', 'Sabra09G0023900' => 'sbr', 'Sabra10G0054000' => 'sbr', 'Sabra14G0081500' => 'sbr', 'Sabra16G0147100' => 'sbr', 'SalBow2G2957' => 'sbo', 'SalBow4G3320' => 'sbo', 'SalBow8G1894' => 'sbo', 'Sc07g0007950' => 'sci', 'Sc12g0001360' => 'sci', 'Sc13g0004330' => 'sci', 'Sc20g0005010' => 'sci', 'Sed0000361' => 'sed', 'Sed0001706' => 'sed', 'Sed0002422' => 'sed', 'Sed0004029' => 'sed', 'Sed0004602' => 'sed', 'Sed0004943' => 'sed', 'Sed0008646' => 'sed', 'Sed0023313' => 'sed', 'Sed0024843' => 'sed', 'SEGI_00081' => 'sgi', 'SEGI_00947' => 'sgi', 'SEGI_04046' => 'sgi', 'SEGI_06880' => 'sgi', 'SEGI_09736' => 'sgi', 'SEGI_12741' => 'sgi', 'SEGI_14530' => 'sgi', 'SEGI_20705' => 'sgi', 'SEGI_26088' => 'sgi', 'SEGI_28323' => 'sgi', 'SEGI_33343' => 'sgi', 'SGA_v2.0_scaffold126G33775' => 'sas', 'SGA_v2.0_scaffold2G01337' => 'sas', 'SGA_v2.0_scaffold38G15006' => 'sas', 'SGA_v2.0_scaffold39G15264' => 'sas', 'SGA_v2.0_scaffold453G51880' => 'sas', 'SHI12696' => 'shi', 'SMO367G1096' => 'smo', 'Solyc01g068630.3' => 'sly', 'Solyc05g011880.3' => 'sly', 'Solyc06g076300.3' => 'sly', 'Solyc09g010940.4' => 'sly', 'Solyc09g075890.3' => 'sly', 'Sopen01g030560' => 'spe', 'Sopen05g006630' => 'spe', 'Sopen06g032720' => 'spe', 'Sopen09g005660' => 'spe', 'Sopen09g030690' => 'spe', 'Sp4g14540' => 'spa', 'Sp4g20030' => 'spa', 'Sp5g01320' => 'spa', 'Sp6g21170' => 'spa', 'Sp6g21180' => 'spa', 'Sp6g21190' => 'spa', 'Sp6g40220' => 'spa', 'TAR362G0122' => 'tar', 'TAR362G1338' => 'tar', 'TAR369G0590' => 'tar', 'TAR371G0824' => 'tar', 'TAR622G1429' => 'tar', 'TAR623G0734' => 'tar', 'TAR625G0441' => 'tar', 'TAR629G0976' => 'tar', 'TAR633G1195' => 'tar', 'TAR636G2660' => 'tar', 'THA.LOC104799440' => 'tha', 'THA.LOC104800966' => 'tha', 'THA.LOC104806559' => 'tha', 'THA.LOC104810765' => 'tha', 'THA.LOC104816266' => 'tha', 'THA.LOC104817419' => 'tha', 'THA.LOC104827021' => 'tha', 'Thecc.01G327400' => 'tca', 'Thecc.04G229200' => 'tca', 'Thecc.05G037400' => 'tca', 'Thecc.09G318600' => 'tca', 'Thecc.09G318700' => 'tca', 'Thhalv10006238m.g' => 'esa', 'Thhalv10014321m.g' => 'esa', 'Thhalv10014335m.g' => 'esa', 'Thhalv10015826m.g' => 'esa', 'Thhalv10017107m.g' => 'esa', 'Thhalv10017180m.g' => 'esa', 'Thhalv10029339m.g' => 'esa', 'TPR.G1699' => 'tpr', 'TPR.G23609' => 'tpr', 'TPR.G3081' => 'tpr', 'TPR.G40397' => 'tpr', 'TPR.G5522' => 'tpr', 'TPR.G5618' => 'tpr', 'TPR.G5626' => 'tpr', 'TWI09G1632' => 'twi', 'TWI23G1230' => 'twi', 'TWI53G1064' => 'twi', 'TWI59G0751' => 'twi', 'TWI74G0947' => 'twi', 'TWI77G0337' => 'twi', 'TWI79G1254' => 'twi', 'unitig_0.g2341' => 'ugi', 'unitig_26.g10006' => 'ugi', 'unitig_26.g10008' => 'ugi', 'unitig_26.g9192' => 'ugi', 'vmacro14547' => 'vma', 'vmacro15333' => 'vma', 'vmacro18743' => 'vma', 'vmacro20166' => 'vma', 'VMungo0331G0523' => 'vmu', 'VMungo0331G1202' => 'vmu', 'VMungo0720G1228' => 'vmu', 'VMungo0720G1514' => 'vmu', 'VMungo1080G0169' => 'vmu', 'VMungo1127G1475' => 'vmu', 'VMungo1383G1208' => 'vmu', 'VMungo1383G1698' => 'vmu', 'Zm00001eb012270' => 'zma', 'Zm00001eb054100' => 'zma', 'Zm00001eb063350' => 'zma', 'Zm00001eb328560' => 'zma', 'Zm00001eb342820' => 'zma', 'Zm00001eb362210' => 'zma', 'Zm00001eb397730' => 'zma', 'Zm00001eb399750' => 'zma' ), 'gf_id' => 'HOM05D000959', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000959' ), 'data_identifier' => 'HOM05D000959', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000959', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '622', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p07100' => 'bna', 'A03p11720' => 'bna', 'A05p08300' => 'bna', 'A05p13380' => 'bna', 'A09p54130' => 'bna', 'A10p16690' => 'bna', 'A10p16700' => 'bna', 'A10p33390' => 'bna', 'Aa31LG10G16020' => 'aar', 'Aa31LG1G11810' => 'aar', 'Aa31LG1G11830' => 'aar', 'Aa31LG1G22510' => 'aar', 'Aa31LG5G4890' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5793' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2310' => 'aag', 'Actinidia08499' => 'ach', 'Actinidia11262' => 'ach', 'Actinidia23926' => 'ach', 'Actinidia34420' => 'ach', 'Actinidia36970' => 'ach', 'Ah.02g111220' => 'amhyb', 'Ah.15g097750' => 'amhyb', 'AL4G27500' => 'aly', 'AL6G11470' => 'aly', 'AL8G35950' => 'aly', 'AL8G35960' => 'aly', 'AL8G35970' => 'aly', 'Aqoxy1G00912' => 'aox', 'Aqoxy2G02253' => 'aox', 'Aqoxy2G02411' => 'aox', 'Aqoxy5G00485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BZ66YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K8ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM4FUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6BF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HFV7XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25JBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0YNNV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MAKK6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P70IT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP2Z6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V61LZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YWP64R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3S9AI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7PGHH' => 'arhy', 'AT2G32150' => 'ath', 'AT3G62040' => 'ath', 'AT5G02230' => 'ath', 'AT5G59480' => 'ath', 'AT5G59490' => 'ath', 'ATR0332G060' => 'atr', 'ATR0559G190' => 'atr', 'ATR0693G294' => 'atr', 'Atru.chr3.3975' => 'acertr', 'Atru.chr3.3976' => 'acertr', 'Atru.chr3.3977' => 'acertr', 'Atru.chr4.2498' => 'acertr', 'Atru.chr5.838' => 'acertr', 'Atru.chr8.1990' => 'acertr', 'Atru.chr8.1991' => 'acertr', 'Atru.chr8.1992' => 'acertr', 'AUR62001759' => 'cqu', 'AUR62009545' => 'cqu', 'AUR62010474' => 'cqu', 'AUR62025820' => 'cqu', 'AUR62030422' => 'cqu', 'AUR62033605' => 'cqu', 'AUR62038615' => 'cqu', 'AUR62041347' => 'cqu', 'BcaB01g04574' => 'bca', 'BcaB02g09263' => 'bca', 'BcaB02g10453' => 'bca', 'BcaB05g22513' => 'bca', 'BcaB08g36253' => 'bca', 'BcaB08g36254' => 'bca', 'BcaC01g06519' => 'bca', 'BcaC02g11889' => 'bca', 'BcaC03g14010' => 'bca', 'BcaC03g18439' => 'bca', 'BcaC04g19765' => 'bca', 'BcaC09g48432' => 'bca', 'BcaNung07302' => 'bca', 'BolC2t06040H' => 'bol', 'BolC2t07346H' => 'bol', 'BolC3t13817H' => 'bol', 'BolC4t22625H' => 'bol', 'BolC4t23297H' => 'bol', 'BolC8t51278H' => 'bol', 'BolC9t58050H' => 'bol', 'BolC9t58051H' => 'bol', 'BolC9t60163H' => 'bol', 'BraA02t04712Z' => 'bra', 'BraA02t05791Z' => 'bra', 'BraA03t10483Z' => 'bra', 'BraA05t19795Z' => 'bra', 'BraA05t20276Z' => 'bra', 'BraA09t40827Z' => 'bra', 'BraA10t43750Z' => 'bra', 'BraA10t43751Z' => 'bra', 'BraA10t45370Z' => 'bra', 'C02p00400' => 'bna', 'C02p12460' => 'bna', 'C03p13680' => 'bna', 'C04p10270' => 'bna', 'C04p17500' => 'bna', 'C08p37010' => 'bna', 'C09p51880' => 'bna', 'C09p51890' => 'bna', 'C09p74300' => 'bna', 'CAN.G179.26' => 'can', 'CAN.G3384.1' => 'can', 'CAN.G394.68' => 'can', 'CAN.G907.13' => 'can', 'CANSAT11G0012' => 'cansat', 'CANSAT25G1586' => 'cansat', 'CANSAT35G0735' => 'cansat', 'CANSAT54G0556' => 'cansat', 'CANSAT64G0356' => 'cansat', 'CANSAT78G2042' => 'cansat', 'CARHR125920' => 'chi', 'CARHR131910' => 'chi', 'CARHR172390' => 'chi', 'CARHR211140' => 'chi', 'CARHR285850' => 'chi', 'CARHR285860' => 'chi', 'Carub.0004s1347' => 'cru', 'Carub.0004s1960' => 'cru', 'Carub.0005s2880' => 'cru', 'Carub.0006s0107' => 'cru', 'Carub.0008s2015' => 'cru', 'Carub.0008s2016' => 'cru', 'Carub.0008s2017' => 'cru', 'Ca_01315_v3' => 'car', 'Ca_05063_v3' => 'car', 'Ca_10231_v3' => 'car', 'Ca_10913_v3' => 'car', 'Ca_19156_v3' => 'car', 'Ca_23644_v3' => 'car', 'Ca_26735_v3' => 'car', 'Cc01_g13130' => 'ccan', 'Cc02_g21690' => 'ccan', 'Cc03_g03600' => 'ccan', 'Cc06_g02510' => 'ccan', 'CDE02G1265' => 'cde', 'CDE05G0415' => 'cde', 'CDE08G1082' => 'cde', 'Cfa005780' => 'cfa', 'Cfa011522' => 'cfa', 'Cfa011523' => 'cfa', 'Cfa015627' => 'cfa', 'Cfa017359' => 'cfa', 'Ciclev10005687m.g' => 'ccl', 'Ciclev10012173m.g' => 'ccl', 'Ciclev10021621m.g' => 'ccl', 'Ciclev10028968m.g' => 'ccl', 'Ciclev10029907m.g' => 'ccl', 'CiPaw.01G164800' => 'cil', 'CiPaw.07G083700' => 'cil', 'CiPaw.07G127000' => 'cil', 'CiPaw.07G136900' => 'cil', 'CiPaw.08G081700' => 'cil', 'CiPaw.09G194600' => 'cil', 'CiPaw.10G146500' => 'cil', 'CiPaw.13G091500' => 'cil', 'CiPaw.13G091600' => 'cil', 'ClCG00G003390' => 'cla', 'ClCG01G007220' => 'cla', 'ClCG03G001370' => 'cla', 'ClCG04G008100' => 'cla', 'ClCG06G006110' => 'cla', 'ClCG06G006130' => 'cla', 'ClCG10G021210' => 'cla', 'COL.COLO4_07648' => 'col', 'COL.COLO4_07650' => 'col', 'COL.COLO4_07651' => 'col', 'COL.COLO4_14780' => 'col', 'COL.COLO4_18546' => 'col', 'COL.COLO4_18547' => 'col', 'COL.COLO4_23103' => 'col', 'COL.COLO4_30419' => 'col', 'COL.COLO4_34232' => 'col', 'Cpa.g.sc169.20' => 'cpa', 'Cpa.g.sc57.45' => 'cpa', 'Cpa.g.sc58.124' => 'cpa', 'Cpa.g.sc58.125' => 'cpa', 'Cpa.g.sc81.118' => 'cpa', 'Cpa.g.sc81.119' => 'cpa', 'Cre12.g524700' => 'cre', 'CsaV3_1G034430' => 'csa', 'CsaV3_1G034440' => 'csa', 'CsaV3_1G034450' => 'csa', 'CsaV3_3G034830' => 'csa', 'CsaV3_4G025090' => 'csa', 'CsaV3_5G018660' => 'csa', 'CsaV3_6G038160' => 'csa', 'CSS0003447' => 'camsi', 'CSS0017840' => 'camsi', 'CSS0019260' => 'camsi', 'CSS0040375' => 'camsi', 'CSS0042533' => 'camsi', 'DCAR_005960' => 'dca', 'DCAR_012104' => 'dca', 'DCAR_012105' => 'dca', 'DCAR_012293' => 'dca', 'DCAR_015632' => 'dca', 'DCAR_024602' => 'dca', 'DCAR_028752' => 'dca', 'Dinv06261' => 'din', 'Dinv13982' => 'din', 'Dinv17029' => 'din', 'Dinv18463' => 'din', 'Dinv33181' => 'din', 'Dinv35585' => 'din', 'Dinv37161' => 'din', 'Dinv42977' => 'din', 'Dinv43122' => 'din', 'Dinv44517' => 'din', 'Duzib093G0256' => 'dzi', 'Duzib106G1254' => 'dzi', 'Duzib128G1789' => 'dzi', 'Duzib133G0633' => 'dzi', 'Duzib138G0510' => 'dzi', 'Duzib150G1084' => 'dzi', 'Duzib168G0488' => 'dzi', 'Duzib168G1523' => 'dzi', 'Duzib170G0133' => 'dzi', 'ECA234G1433' => 'eca', 'ECA236G1432' => 'eca', 'ECA236G2256' => 'eca', 'ECA236G2365' => 'eca', 'ECA236G4830' => 'eca', 'ECA248G1505' => 'eca', 'EL10Ac3g06431' => 'bvu', 'EL10Ac5g12577' => 'bvu', 'EL10Ac6g13533' => 'bvu', 'EL10Ac7g16045' => 'bvu', 'Eucgr.A01281' => 'egr', 'Eucgr.B02326' => 'egr', 'Eucgr.H03532' => 'egr', 'Eucgr.K00553' => 'egr', 'Eucgr.K03116' => 'egr', 'FAN02G3963' => 'fan', 'FAN05G0438' => 'fan', 'FAN09G2434' => 'fan', 'FAN12G3984' => 'fan', 'FAN14G0798' => 'fan', 'FAN17G0652' => 'fan', 'FAN19G1988' => 'fan', 'FAN22G0632' => 'fan', 'FAN23G0387' => 'fan', 'FAN26G1323' => 'fan', 'FAN28G0666' => 'fan', 'FvH4_1g26080' => 'fve', 'FvH4_3g36780' => 'fve', 'FvH4_4g15270' => 'fve', 'FvH4_6g13490' => 'fve', 'Glyma.01G098700' => 'gma', 'Glyma.03G065900' => 'gma', 'Glyma.03G073754' => 'gma', 'Glyma.03G073758' => 'gma', 'Glyma.03G083200' => 'gma', 'Glyma.03G225500' => 'gma', 'Glyma.05G037766' => 'gma', 'Glyma.07G133500' => 'gma', 'Glyma.10G139400' => 'gma', 'Glyma.10G248900' => 'gma', 'Glyma.11G137800' => 'gma', 'Glyma.12G061300' => 'gma', 'Glyma.13G337900' => 'gma', 'Glyma.15G036600' => 'gma', 'Glyma.18G182800' => 'gma', 'Glyma.19G222500' => 'gma', 'Glyma.20G144800' => 'gma', 'Gohir.A01G222000' => 'ghi', 'Gohir.A03G044000' => 'ghi', 'Gohir.A03G044100' => 'ghi', 'Gohir.A04G083100' => 'ghi', 'Gohir.A07G127200' => 'ghi', 'Gohir.A07G132400' => 'ghi', 'Gohir.A08G000700' => 'ghi', 'Gohir.A11G327300' => 'ghi', 'Gohir.D01G211500' => 'ghi', 'Gohir.D03G123400' => 'ghi', 'Gohir.D03G123500' => 'ghi', 'Gohir.D04G121800' => 'ghi', 'Gohir.D07G131500' => 'ghi', 'Gohir.D07G136600' => 'ghi', 'Gohir.D08G011600' => 'ghi', 'Gohir.D11G346200' => 'ghi', 'Gorai.001G142800' => 'gra', 'Gorai.001G148700' => 'gra', 'Gorai.002G257300' => 'gra', 'Gorai.003G130000' => 'gra', 'Gorai.003G130100' => 'gra', 'Gorai.004G005300' => 'gra', 'Gorai.007G376500' => 'gra', 'Gorai.012G104700' => 'gra', 'GSVIVG01017946001' => 'vvi', 'GSVIVG01024928001' => 'vvi', 'GSVIVG01028227001' => 'vvi', 'GSVIVG01034151001' => 'vvi', 'HanXRQChr05g0135031' => 'han', 'HanXRQChr05g0135041' => 'han', 'HanXRQChr05g0140021' => 'han', 'HanXRQChr06g0178981' => 'han', 'HanXRQChr07g0188251' => 'han', 'HanXRQChr08g0235311' => 'han', 'HanXRQChr09g0271011' => 'han', 'HanXRQChr10g0293321' => 'han', 'HanXRQChr13g0388171' => 'han', 'Haze_00916' => 'cav', 'Haze_05063' => 'cav', 'Haze_20814' => 'cav', 'Haze_24128' => 'cav', 'Hma1.2p1_0745F.1_g212010' => 'hma', 'Hma1.2p1_0757F.1_g213260' => 'hma', 'Hma1.2p1_0936F.1_g238840' => 'hma', 'Hma1.2p1_1735F.1_g299890' => 'hma', 'Hma1.2p1_1861F.1_g305685' => 'hma', 'HPP92_003397' => 'vpl', 'HPP92_012597' => 'vpl', 'HPP92_015520' => 'vpl', 'HPP92_015539' => 'vpl', 'HPP92_020373' => 'vpl', 'Hund04938' => 'sun', 'Hund10677' => 'sun', 'Hund11033' => 'sun', 'Hund12155' => 'sun', 'Lalb_Chr01g0022551' => 'lal', 'Lalb_Chr03g0042341' => 'lal', 'Lalb_Chr07g0192931' => 'lal', 'Lalb_Chr12g0209551' => 'lal', 'Lalb_Chr19g0125251' => 'lal', 'Lalb_Chr19g0137891' => 'lal', 'Lalb_Chr21g0304641' => 'lal', 'Lalb_Chr21g0309881' => 'lal', 'Lj1A5T12' => 'lonja', 'Lj1C148G10' => 'lonja', 'Lj2A93T83' => 'lonja', 'Lj3A738G68' => 'lonja', 'Lj3C966T1' => 'lonja', 'Lj3g0018958' => 'lja', 'Lj3g0021831' => 'lja', 'Lj3g0025443' => 'lja', 'Lj4g0026809' => 'lja', 'Lj5g0012558' => 'lja', 'Lj5g0021586' => 'lja', 'Lsat_1_v5_gn_5_156840' => 'lsa', 'Lsat_1_v5_gn_8_73460' => 'lsa', 'Lsat_1_v5_gn_8_73481' => 'lsa', 'Lsat_1_v5_gn_9_31601' => 'lsa', 'Lsat_1_v5_gn_9_77320' => 'lsa', 'Manes.01G171300' => 'mes', 'Manes.01G171400' => 'mes', 'Manes.01G236100' => 'mes', 'Manes.02G130500' => 'mes', 'Manes.02G130600' => 'mes', 'Manes.03G180200' => 'mes', 'Manes.05G007000' => 'mes', 'Manes.08G084400' => 'mes', 'Manes.09G092600' => 'mes', 'Manes.15G027900' => 'mes', 'MBI04_g40948_MAGBIO' => 'mbi', 'MBI14_g12123_MAGBIO' => 'mbi', 'MBI18_g28915_MAGBIO' => 'mbi', 'MCO09G053' => 'mco', 'MCO11G782' => 'mco', 'MCO15G215' => 'mco', 'MD03G1088500' => 'mdo', 'MD03G1088600' => 'mdo', 'MD04G1130800' => 'mdo', 'MD09G1291700' => 'mdo', 'MD11G1097500' => 'mdo', 'MD11G1097600' => 'mdo', 'MD12G1143900' => 'mdo', 'MD13G1191400' => 'mdo', 'MD16G1191500' => 'mdo', 'Medtr1g085570' => 'mtr', 'Medtr1g104610' => 'mtr', 'Medtr2g097520' => 'mtr', 'Medtr4g021800' => 'mtr', 'Medtr4g021825' => 'mtr', 'Medtr4g064270' => 'mtr', 'Medtr4g064380' => 'mtr', 'Medtr7g062150' => 'mtr', 'MELO3C003138.2' => 'cme', 'MELO3C005187.2' => 'cme', 'MELO3C009252.2' => 'cme', 'MELO3C014481.2' => 'cme', 'MELO3C020616.2' => 'cme', 'MELO3C020617.2' => 'cme', 'MELO3C020618.2' => 'cme', 'Migut.G00328' => 'egut', 'Migut.J00320' => 'egut', 'Migut.L01000' => 'egut', 'Migut.L01953' => 'egut', 'MSTRG.10253' => 'ama', 'MSTRG.19077' => 'ama', 'MSTRG.26780' => 'ama', 'MSTRG.4023' => 'ama', 'MSTRG.5655' => 'ama', 'MSTRG.9992' => 'ama', 'Nitab4.5_0000043g0310' => 'nta', 'Nitab4.5_0000463g0080' => 'nta', 'Nitab4.5_0000705g0170' => 'nta', 'Nitab4.5_0001326g0060' => 'nta', 'Nitab4.5_0001628g0030' => 'nta', 'Nitab4.5_0002103g0110' => 'nta', 'Nitab4.5_0002946g0030' => 'nta', 'Nitab4.5_0004639g0030' => 'nta', 'Nn2g11149' => 'nnu', 'Nn2g13389' => 'nnu', 'Nn4g25326' => 'nnu', 'Nn4g26290' => 'nnu', 'Nn5g29865' => 'nnu', 'Oeu004163.1' => 'oeu', 'Oeu006901.1' => 'oeu', 'Oeu010096.1' => 'oeu', 'Oeu024340.1' => 'oeu', 'Oeu048369.1' => 'oeu', 'Os01g0973000' => 'osa', 'Os03g0273800' => 'osa', 'Os03g0701200' => 'osa', 'Os03g0834050' => 'osa', 'Os07g0634400' => 'osa', 'Peaxi162Scf00092g01414' => 'pax', 'Peaxi162Scf00165g00818' => 'pax', 'Peaxi162Scf00309g00516' => 'pax', 'Peaxi162Scf00774g00218' => 'pax', 'PGR004G1824' => 'pgr', 'PGR004G2606' => 'pgr', 'PGR031G2716' => 'pgr', 'PGR102G2460' => 'pgr', 'PGR142G2599' => 'pgr', 'PGSC0003DMG400000843' => 'stu', 'PGSC0003DMG400008829' => 'stu', 'PGSC0003DMG400030418' => 'stu', 'PGSC0003DMG400031834' => 'stu', 'PGSC0003DMG401028300' => 'stu', 'PGSC0003DMG402028300' => 'stu', 'Phvul.001G219300' => 'pvu', 'Phvul.007G056000' => 'pvu', 'Phvul.007G208000' => 'pvu', 'Phvul.008G119500' => 'pvu', 'Phvul.010G011200' => 'pvu', 'Phvul.010G014800' => 'pvu', 'Phvul.011G062900' => 'pvu', 'Phvul.L007043' => 'pvu', 'Potri.001G242300' => 'ptr', 'Potri.002G185300' => 'ptr', 'Potri.006G086900' => 'ptr', 'Potri.008G151700' => 'ptr', 'Potri.009G033500' => 'ptr', 'Potri.010G089300' => 'ptr', 'Potri.014G110800' => 'ptr', 'Pp3c27_8130' => 'ppa', 'Pp3c6_27410' => 'ppa', 'PRCOL_00001659' => 'pco', 'PRCOL_00001927' => 'pco', 'PRCOL_00003649' => 'pco', 'Prupe.1G011600' => 'ppe', 'Prupe.3G000800' => 'ppe', 'Prupe.3G001100' => 'ppe', 'Prupe.6G072700' => 'ppe', 'Prupe.6G072800' => 'ppe', 'Prupe.6G257300' => 'ppe', 'Prupe.8G033000' => 'ppe', 'Psat0s2633g0080' => 'psa', 'Psat0s3396g0080' => 'psa', 'Psat0s3396g0200' => 'psa', 'Psat3g139080' => 'psa', 'Psat5g285080' => 'psa', 'Psat6g157760' => 'psa', 'Psat6g208440' => 'psa', 'Psat7g215320' => 'psa', 'Psat7g215400' => 'psa', 'Psat7g235600' => 'psa', 'Psat7g235760' => 'psa', 'PSO063G4603' => 'pso', 'PSO210G0182' => 'pso', 'PSO210G0196' => 'pso', 'PSO339G0394' => 'pso', 'PSO339G4127' => 'pso', 'PSO513G0064' => 'pso', 'PSO761G0079' => 'pso', 'QL01p031003' => 'qlo', 'QL01p031078' => 'qlo', 'QL06p003004' => 'qlo', 'QL07p048731' => 'qlo', 'QL09p037427' => 'qlo', 'RcHm_v2.0_Chr3g0466361' => 'rch', 'RcHm_v2.0_Chr3g0485571' => 'rch', 'RcHm_v2.0_Chr4g0416551' => 'rch', 'RcHm_v2.0_Chr5g0065831' => 'rch', 'Rhsim01G0230500' => 'rsi', 'Rhsim05G0194000' => 'rsi', 'Rhsim08G0250400' => 'rsi', 'Sabra02G0131000' => 'sbr', 'Sabra06G0066300' => 'sbr', 'Sabra08G0115500' => 'sbr', 'Sabra09G0023900' => 'sbr', 'Sabra10G0054000' => 'sbr', 'Sabra14G0081500' => 'sbr', 'Sabra16G0147100' => 'sbr', 'SalBow2G2957' => 'sbo', 'SalBow4G3320' => 'sbo', 'SalBow8G1894' => 'sbo', 'Sc07g0007950' => 'sci', 'Sc12g0001360' => 'sci', 'Sc13g0004330' => 'sci', 'Sc20g0005010' => 'sci', 'Sed0000361' => 'sed', 'Sed0001706' => 'sed', 'Sed0002422' => 'sed', 'Sed0004029' => 'sed', 'Sed0004602' => 'sed', 'Sed0004943' => 'sed', 'Sed0008646' => 'sed', 'Sed0023313' => 'sed', 'Sed0024843' => 'sed', 'SEGI_00081' => 'sgi', 'SEGI_00947' => 'sgi', 'SEGI_04046' => 'sgi', 'SEGI_06880' => 'sgi', 'SEGI_09736' => 'sgi', 'SEGI_12741' => 'sgi', 'SEGI_14530' => 'sgi', 'SEGI_20705' => 'sgi', 'SEGI_26088' => 'sgi', 'SEGI_28323' => 'sgi', 'SEGI_33343' => 'sgi', 'SGA_v2.0_scaffold126G33775' => 'sas', 'SGA_v2.0_scaffold2G01337' => 'sas', 'SGA_v2.0_scaffold38G15006' => 'sas', 'SGA_v2.0_scaffold39G15264' => 'sas', 'SGA_v2.0_scaffold453G51880' => 'sas', 'SHI12696' => 'shi', 'SMO367G1096' => 'smo', 'Solyc01g068630.3' => 'sly', 'Solyc05g011880.3' => 'sly', 'Solyc06g076300.3' => 'sly', 'Solyc09g010940.4' => 'sly', 'Solyc09g075890.3' => 'sly', 'Sopen01g030560' => 'spe', 'Sopen05g006630' => 'spe', 'Sopen06g032720' => 'spe', 'Sopen09g005660' => 'spe', 'Sopen09g030690' => 'spe', 'Sp4g14540' => 'spa', 'Sp4g20030' => 'spa', 'Sp5g01320' => 'spa', 'Sp6g21170' => 'spa', 'Sp6g21180' => 'spa', 'Sp6g21190' => 'spa', 'Sp6g40220' => 'spa', 'TAR362G0122' => 'tar', 'TAR362G1338' => 'tar', 'TAR369G0590' => 'tar', 'TAR371G0824' => 'tar', 'TAR622G1429' => 'tar', 'TAR623G0734' => 'tar', 'TAR625G0441' => 'tar', 'TAR629G0976' => 'tar', 'TAR633G1195' => 'tar', 'TAR636G2660' => 'tar', 'THA.LOC104799440' => 'tha', 'THA.LOC104800966' => 'tha', 'THA.LOC104806559' => 'tha', 'THA.LOC104810765' => 'tha', 'THA.LOC104816266' => 'tha', 'THA.LOC104817419' => 'tha', 'THA.LOC104827021' => 'tha', 'Thecc.01G327400' => 'tca', 'Thecc.04G229200' => 'tca', 'Thecc.05G037400' => 'tca', 'Thecc.09G318600' => 'tca', 'Thecc.09G318700' => 'tca', 'Thhalv10006238m.g' => 'esa', 'Thhalv10014321m.g' => 'esa', 'Thhalv10014335m.g' => 'esa', 'Thhalv10015826m.g' => 'esa', 'Thhalv10017107m.g' => 'esa', 'Thhalv10017180m.g' => 'esa', 'Thhalv10029339m.g' => 'esa', 'TPR.G1699' => 'tpr', 'TPR.G23609' => 'tpr', 'TPR.G3081' => 'tpr', 'TPR.G40397' => 'tpr', 'TPR.G5522' => 'tpr', 'TPR.G5618' => 'tpr', 'TPR.G5626' => 'tpr', 'TWI09G1632' => 'twi', 'TWI23G1230' => 'twi', 'TWI53G1064' => 'twi', 'TWI59G0751' => 'twi', 'TWI74G0947' => 'twi', 'TWI77G0337' => 'twi', 'TWI79G1254' => 'twi', 'unitig_0.g2341' => 'ugi', 'unitig_26.g10006' => 'ugi', 'unitig_26.g10008' => 'ugi', 'unitig_26.g9192' => 'ugi', 'vmacro14547' => 'vma', 'vmacro15333' => 'vma', 'vmacro18743' => 'vma', 'vmacro20166' => 'vma', 'VMungo0331G0523' => 'vmu', 'VMungo0331G1202' => 'vmu', 'VMungo0720G1228' => 'vmu', 'VMungo0720G1514' => 'vmu', 'VMungo1080G0169' => 'vmu', 'VMungo1127G1475' => 'vmu', 'VMungo1383G1208' => 'vmu', 'VMungo1383G1698' => 'vmu', 'Zm00001eb012270' => 'zma', 'Zm00001eb054100' => 'zma', 'Zm00001eb063350' => 'zma', 'Zm00001eb328560' => 'zma', 'Zm00001eb342820' => 'zma', 'Zm00001eb362210' => 'zma', 'Zm00001eb397730' => 'zma', 'Zm00001eb399750' => 'zma' ) $gf_id = 'HOM05D000959' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000959' ) $data_identifier = 'HOM05D000959' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 5, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 5, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 10, 'mbi' => (int) 3, 'mco' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 2, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 3, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 11, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399750' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000959', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '622', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p07100' => 'bna', 'A03p11720' => 'bna', 'A05p08300' => 'bna', 'A05p13380' => 'bna', 'A09p54130' => 'bna', 'A10p16690' => 'bna', 'A10p16700' => 'bna', 'A10p33390' => 'bna', 'Aa31LG10G16020' => 'aar', 'Aa31LG1G11810' => 'aar', 'Aa31LG1G11830' => 'aar', 'Aa31LG1G22510' => 'aar', 'Aa31LG5G4890' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5793' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2310' => 'aag', 'Actinidia08499' => 'ach', 'Actinidia11262' => 'ach', 'Actinidia23926' => 'ach', 'Actinidia34420' => 'ach', 'Actinidia36970' => 'ach', 'Ah.02g111220' => 'amhyb', 'Ah.15g097750' => 'amhyb', 'AL4G27500' => 'aly', 'AL6G11470' => 'aly', 'AL8G35950' => 'aly', 'AL8G35960' => 'aly', 'AL8G35970' => 'aly', 'Aqoxy1G00912' => 'aox', 'Aqoxy2G02253' => 'aox', 'Aqoxy2G02411' => 'aox', 'Aqoxy5G00485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BZ66YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K8ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM4FUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6BF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HFV7XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25JBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0YNNV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MAKK6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P70IT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP2Z6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V61LZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YWP64R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3S9AI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7PGHH' => 'arhy', 'AT2G32150' => 'ath', 'AT3G62040' => 'ath', 'AT5G02230' => 'ath', 'AT5G59480' => 'ath', 'AT5G59490' => 'ath', 'ATR0332G060' => 'atr', 'ATR0559G190' => 'atr', 'ATR0693G294' => 'atr', 'Atru.chr3.3975' => 'acertr', 'Atru.chr3.3976' => 'acertr', 'Atru.chr3.3977' => 'acertr', 'Atru.chr4.2498' => 'acertr', 'Atru.chr5.838' => 'acertr', 'Atru.chr8.1990' => 'acertr', 'Atru.chr8.1991' => 'acertr', 'Atru.chr8.1992' => 'acertr', 'AUR62001759' => 'cqu', 'AUR62009545' => 'cqu', 'AUR62010474' => 'cqu', 'AUR62025820' => 'cqu', 'AUR62030422' => 'cqu', 'AUR62033605' => 'cqu', 'AUR62038615' => 'cqu', 'AUR62041347' => 'cqu', 'BcaB01g04574' => 'bca', 'BcaB02g09263' => 'bca', 'BcaB02g10453' => 'bca', 'BcaB05g22513' => 'bca', 'BcaB08g36253' => 'bca', 'BcaB08g36254' => 'bca', 'BcaC01g06519' => 'bca', 'BcaC02g11889' => 'bca', 'BcaC03g14010' => 'bca', 'BcaC03g18439' => 'bca', 'BcaC04g19765' => 'bca', 'BcaC09g48432' => 'bca', 'BcaNung07302' => 'bca', 'BolC2t06040H' => 'bol', 'BolC2t07346H' => 'bol', 'BolC3t13817H' => 'bol', 'BolC4t22625H' => 'bol', 'BolC4t23297H' => 'bol', 'BolC8t51278H' => 'bol', 'BolC9t58050H' => 'bol', 'BolC9t58051H' => 'bol', 'BolC9t60163H' => 'bol', 'BraA02t04712Z' => 'bra', 'BraA02t05791Z' => 'bra', 'BraA03t10483Z' => 'bra', 'BraA05t19795Z' => 'bra', 'BraA05t20276Z' => 'bra', 'BraA09t40827Z' => 'bra', 'BraA10t43750Z' => 'bra', 'BraA10t43751Z' => 'bra', 'BraA10t45370Z' => 'bra', 'C02p00400' => 'bna', 'C02p12460' => 'bna', 'C03p13680' => 'bna', 'C04p10270' => 'bna', 'C04p17500' => 'bna', 'C08p37010' => 'bna', 'C09p51880' => 'bna', 'C09p51890' => 'bna', 'C09p74300' => 'bna', 'CAN.G179.26' => 'can', 'CAN.G3384.1' => 'can', 'CAN.G394.68' => 'can', 'CAN.G907.13' => 'can', 'CANSAT11G0012' => 'cansat', 'CANSAT25G1586' => 'cansat', 'CANSAT35G0735' => 'cansat', 'CANSAT54G0556' => 'cansat', 'CANSAT64G0356' => 'cansat', 'CANSAT78G2042' => 'cansat', 'CARHR125920' => 'chi', 'CARHR131910' => 'chi', 'CARHR172390' => 'chi', 'CARHR211140' => 'chi', 'CARHR285850' => 'chi', 'CARHR285860' => 'chi', 'Carub.0004s1347' => 'cru', 'Carub.0004s1960' => 'cru', 'Carub.0005s2880' => 'cru', 'Carub.0006s0107' => 'cru', 'Carub.0008s2015' => 'cru', 'Carub.0008s2016' => 'cru', 'Carub.0008s2017' => 'cru', 'Ca_01315_v3' => 'car', 'Ca_05063_v3' => 'car', 'Ca_10231_v3' => 'car', 'Ca_10913_v3' => 'car', 'Ca_19156_v3' => 'car', 'Ca_23644_v3' => 'car', 'Ca_26735_v3' => 'car', 'Cc01_g13130' => 'ccan', 'Cc02_g21690' => 'ccan', 'Cc03_g03600' => 'ccan', 'Cc06_g02510' => 'ccan', 'CDE02G1265' => 'cde', 'CDE05G0415' => 'cde', 'CDE08G1082' => 'cde', 'Cfa005780' => 'cfa', 'Cfa011522' => 'cfa', 'Cfa011523' => 'cfa', 'Cfa015627' => 'cfa', 'Cfa017359' => 'cfa', 'Ciclev10005687m.g' => 'ccl', 'Ciclev10012173m.g' => 'ccl', 'Ciclev10021621m.g' => 'ccl', 'Ciclev10028968m.g' => 'ccl', 'Ciclev10029907m.g' => 'ccl', 'CiPaw.01G164800' => 'cil', 'CiPaw.07G083700' => 'cil', 'CiPaw.07G127000' => 'cil', 'CiPaw.07G136900' => 'cil', 'CiPaw.08G081700' => 'cil', 'CiPaw.09G194600' => 'cil', 'CiPaw.10G146500' => 'cil', 'CiPaw.13G091500' => 'cil', 'CiPaw.13G091600' => 'cil', 'ClCG00G003390' => 'cla', 'ClCG01G007220' => 'cla', 'ClCG03G001370' => 'cla', 'ClCG04G008100' => 'cla', 'ClCG06G006110' => 'cla', 'ClCG06G006130' => 'cla', 'ClCG10G021210' => 'cla', 'COL.COLO4_07648' => 'col', 'COL.COLO4_07650' => 'col', 'COL.COLO4_07651' => 'col', 'COL.COLO4_14780' => 'col', 'COL.COLO4_18546' => 'col', 'COL.COLO4_18547' => 'col', 'COL.COLO4_23103' => 'col', 'COL.COLO4_30419' => 'col', 'COL.COLO4_34232' => 'col', 'Cpa.g.sc169.20' => 'cpa', 'Cpa.g.sc57.45' => 'cpa', 'Cpa.g.sc58.124' => 'cpa', 'Cpa.g.sc58.125' => 'cpa', 'Cpa.g.sc81.118' => 'cpa', 'Cpa.g.sc81.119' => 'cpa', 'Cre12.g524700' => 'cre', 'CsaV3_1G034430' => 'csa', 'CsaV3_1G034440' => 'csa', 'CsaV3_1G034450' => 'csa', 'CsaV3_3G034830' => 'csa', 'CsaV3_4G025090' => 'csa', 'CsaV3_5G018660' => 'csa', 'CsaV3_6G038160' => 'csa', 'CSS0003447' => 'camsi', 'CSS0017840' => 'camsi', 'CSS0019260' => 'camsi', 'CSS0040375' => 'camsi', 'CSS0042533' => 'camsi', 'DCAR_005960' => 'dca', 'DCAR_012104' => 'dca', 'DCAR_012105' => 'dca', 'DCAR_012293' => 'dca', 'DCAR_015632' => 'dca', 'DCAR_024602' => 'dca', 'DCAR_028752' => 'dca', 'Dinv06261' => 'din', 'Dinv13982' => 'din', 'Dinv17029' => 'din', 'Dinv18463' => 'din', 'Dinv33181' => 'din', 'Dinv35585' => 'din', 'Dinv37161' => 'din', 'Dinv42977' => 'din', 'Dinv43122' => 'din', 'Dinv44517' => 'din', 'Duzib093G0256' => 'dzi', 'Duzib106G1254' => 'dzi', 'Duzib128G1789' => 'dzi', 'Duzib133G0633' => 'dzi', 'Duzib138G0510' => 'dzi', 'Duzib150G1084' => 'dzi', 'Duzib168G0488' => 'dzi', 'Duzib168G1523' => 'dzi', 'Duzib170G0133' => 'dzi', 'ECA234G1433' => 'eca', 'ECA236G1432' => 'eca', 'ECA236G2256' => 'eca', 'ECA236G2365' => 'eca', 'ECA236G4830' => 'eca', 'ECA248G1505' => 'eca', 'EL10Ac3g06431' => 'bvu', 'EL10Ac5g12577' => 'bvu', 'EL10Ac6g13533' => 'bvu', 'EL10Ac7g16045' => 'bvu', 'Eucgr.A01281' => 'egr', 'Eucgr.B02326' => 'egr', 'Eucgr.H03532' => 'egr', 'Eucgr.K00553' => 'egr', 'Eucgr.K03116' => 'egr', 'FAN02G3963' => 'fan', 'FAN05G0438' => 'fan', 'FAN09G2434' => 'fan', 'FAN12G3984' => 'fan', 'FAN14G0798' => 'fan', 'FAN17G0652' => 'fan', 'FAN19G1988' => 'fan', 'FAN22G0632' => 'fan', 'FAN23G0387' => 'fan', 'FAN26G1323' => 'fan', 'FAN28G0666' => 'fan', 'FvH4_1g26080' => 'fve', 'FvH4_3g36780' => 'fve', 'FvH4_4g15270' => 'fve', 'FvH4_6g13490' => 'fve', 'Glyma.01G098700' => 'gma', 'Glyma.03G065900' => 'gma', 'Glyma.03G073754' => 'gma', 'Glyma.03G073758' => 'gma', 'Glyma.03G083200' => 'gma', 'Glyma.03G225500' => 'gma', 'Glyma.05G037766' => 'gma', 'Glyma.07G133500' => 'gma', 'Glyma.10G139400' => 'gma', 'Glyma.10G248900' => 'gma', 'Glyma.11G137800' => 'gma', 'Glyma.12G061300' => 'gma', 'Glyma.13G337900' => 'gma', 'Glyma.15G036600' => 'gma', 'Glyma.18G182800' => 'gma', 'Glyma.19G222500' => 'gma', 'Glyma.20G144800' => 'gma', 'Gohir.A01G222000' => 'ghi', 'Gohir.A03G044000' => 'ghi', 'Gohir.A03G044100' => 'ghi', 'Gohir.A04G083100' => 'ghi', 'Gohir.A07G127200' => 'ghi', 'Gohir.A07G132400' => 'ghi', 'Gohir.A08G000700' => 'ghi', 'Gohir.A11G327300' => 'ghi', 'Gohir.D01G211500' => 'ghi', 'Gohir.D03G123400' => 'ghi', 'Gohir.D03G123500' => 'ghi', 'Gohir.D04G121800' => 'ghi', 'Gohir.D07G131500' => 'ghi', 'Gohir.D07G136600' => 'ghi', 'Gohir.D08G011600' => 'ghi', 'Gohir.D11G346200' => 'ghi', 'Gorai.001G142800' => 'gra', 'Gorai.001G148700' => 'gra', 'Gorai.002G257300' => 'gra', 'Gorai.003G130000' => 'gra', 'Gorai.003G130100' => 'gra', 'Gorai.004G005300' => 'gra', 'Gorai.007G376500' => 'gra', 'Gorai.012G104700' => 'gra', 'GSVIVG01017946001' => 'vvi', 'GSVIVG01024928001' => 'vvi', 'GSVIVG01028227001' => 'vvi', 'GSVIVG01034151001' => 'vvi', 'HanXRQChr05g0135031' => 'han', 'HanXRQChr05g0135041' => 'han', 'HanXRQChr05g0140021' => 'han', 'HanXRQChr06g0178981' => 'han', 'HanXRQChr07g0188251' => 'han', 'HanXRQChr08g0235311' => 'han', 'HanXRQChr09g0271011' => 'han', 'HanXRQChr10g0293321' => 'han', 'HanXRQChr13g0388171' => 'han', 'Haze_00916' => 'cav', 'Haze_05063' => 'cav', 'Haze_20814' => 'cav', 'Haze_24128' => 'cav', 'Hma1.2p1_0745F.1_g212010' => 'hma', 'Hma1.2p1_0757F.1_g213260' => 'hma', 'Hma1.2p1_0936F.1_g238840' => 'hma', 'Hma1.2p1_1735F.1_g299890' => 'hma', 'Hma1.2p1_1861F.1_g305685' => 'hma', 'HPP92_003397' => 'vpl', 'HPP92_012597' => 'vpl', 'HPP92_015520' => 'vpl', 'HPP92_015539' => 'vpl', 'HPP92_020373' => 'vpl', 'Hund04938' => 'sun', 'Hund10677' => 'sun', 'Hund11033' => 'sun', 'Hund12155' => 'sun', 'Lalb_Chr01g0022551' => 'lal', 'Lalb_Chr03g0042341' => 'lal', 'Lalb_Chr07g0192931' => 'lal', 'Lalb_Chr12g0209551' => 'lal', 'Lalb_Chr19g0125251' => 'lal', 'Lalb_Chr19g0137891' => 'lal', 'Lalb_Chr21g0304641' => 'lal', 'Lalb_Chr21g0309881' => 'lal', 'Lj1A5T12' => 'lonja', 'Lj1C148G10' => 'lonja', 'Lj2A93T83' => 'lonja', 'Lj3A738G68' => 'lonja', 'Lj3C966T1' => 'lonja', 'Lj3g0018958' => 'lja', 'Lj3g0021831' => 'lja', 'Lj3g0025443' => 'lja', 'Lj4g0026809' => 'lja', 'Lj5g0012558' => 'lja', 'Lj5g0021586' => 'lja', 'Lsat_1_v5_gn_5_156840' => 'lsa', 'Lsat_1_v5_gn_8_73460' => 'lsa', 'Lsat_1_v5_gn_8_73481' => 'lsa', 'Lsat_1_v5_gn_9_31601' => 'lsa', 'Lsat_1_v5_gn_9_77320' => 'lsa', 'Manes.01G171300' => 'mes', 'Manes.01G171400' => 'mes', 'Manes.01G236100' => 'mes', 'Manes.02G130500' => 'mes', 'Manes.02G130600' => 'mes', 'Manes.03G180200' => 'mes', 'Manes.05G007000' => 'mes', 'Manes.08G084400' => 'mes', 'Manes.09G092600' => 'mes', 'Manes.15G027900' => 'mes', 'MBI04_g40948_MAGBIO' => 'mbi', 'MBI14_g12123_MAGBIO' => 'mbi', 'MBI18_g28915_MAGBIO' => 'mbi', 'MCO09G053' => 'mco', 'MCO11G782' => 'mco', 'MCO15G215' => 'mco', 'MD03G1088500' => 'mdo', 'MD03G1088600' => 'mdo', 'MD04G1130800' => 'mdo', 'MD09G1291700' => 'mdo', 'MD11G1097500' => 'mdo', 'MD11G1097600' => 'mdo', 'MD12G1143900' => 'mdo', 'MD13G1191400' => 'mdo', 'MD16G1191500' => 'mdo', 'Medtr1g085570' => 'mtr', 'Medtr1g104610' => 'mtr', 'Medtr2g097520' => 'mtr', 'Medtr4g021800' => 'mtr', 'Medtr4g021825' => 'mtr', 'Medtr4g064270' => 'mtr', 'Medtr4g064380' => 'mtr', 'Medtr7g062150' => 'mtr', 'MELO3C003138.2' => 'cme', 'MELO3C005187.2' => 'cme', 'MELO3C009252.2' => 'cme', 'MELO3C014481.2' => 'cme', 'MELO3C020616.2' => 'cme', 'MELO3C020617.2' => 'cme', 'MELO3C020618.2' => 'cme', 'Migut.G00328' => 'egut', 'Migut.J00320' => 'egut', 'Migut.L01000' => 'egut', 'Migut.L01953' => 'egut', 'MSTRG.10253' => 'ama', 'MSTRG.19077' => 'ama', 'MSTRG.26780' => 'ama', 'MSTRG.4023' => 'ama', 'MSTRG.5655' => 'ama', 'MSTRG.9992' => 'ama', 'Nitab4.5_0000043g0310' => 'nta', 'Nitab4.5_0000463g0080' => 'nta', 'Nitab4.5_0000705g0170' => 'nta', 'Nitab4.5_0001326g0060' => 'nta', 'Nitab4.5_0001628g0030' => 'nta', 'Nitab4.5_0002103g0110' => 'nta', 'Nitab4.5_0002946g0030' => 'nta', 'Nitab4.5_0004639g0030' => 'nta', 'Nn2g11149' => 'nnu', 'Nn2g13389' => 'nnu', 'Nn4g25326' => 'nnu', 'Nn4g26290' => 'nnu', 'Nn5g29865' => 'nnu', 'Oeu004163.1' => 'oeu', 'Oeu006901.1' => 'oeu', 'Oeu010096.1' => 'oeu', 'Oeu024340.1' => 'oeu', 'Oeu048369.1' => 'oeu', 'Os01g0973000' => 'osa', 'Os03g0273800' => 'osa', 'Os03g0701200' => 'osa', 'Os03g0834050' => 'osa', 'Os07g0634400' => 'osa', 'Peaxi162Scf00092g01414' => 'pax', 'Peaxi162Scf00165g00818' => 'pax', 'Peaxi162Scf00309g00516' => 'pax', 'Peaxi162Scf00774g00218' => 'pax', 'PGR004G1824' => 'pgr', 'PGR004G2606' => 'pgr', 'PGR031G2716' => 'pgr', 'PGR102G2460' => 'pgr', 'PGR142G2599' => 'pgr', 'PGSC0003DMG400000843' => 'stu', 'PGSC0003DMG400008829' => 'stu', 'PGSC0003DMG400030418' => 'stu', 'PGSC0003DMG400031834' => 'stu', 'PGSC0003DMG401028300' => 'stu', 'PGSC0003DMG402028300' => 'stu', 'Phvul.001G219300' => 'pvu', 'Phvul.007G056000' => 'pvu', 'Phvul.007G208000' => 'pvu', 'Phvul.008G119500' => 'pvu', 'Phvul.010G011200' => 'pvu', 'Phvul.010G014800' => 'pvu', 'Phvul.011G062900' => 'pvu', 'Phvul.L007043' => 'pvu', 'Potri.001G242300' => 'ptr', 'Potri.002G185300' => 'ptr', 'Potri.006G086900' => 'ptr', 'Potri.008G151700' => 'ptr', 'Potri.009G033500' => 'ptr', 'Potri.010G089300' => 'ptr', 'Potri.014G110800' => 'ptr', 'Pp3c27_8130' => 'ppa', 'Pp3c6_27410' => 'ppa', 'PRCOL_00001659' => 'pco', 'PRCOL_00001927' => 'pco', 'PRCOL_00003649' => 'pco', 'Prupe.1G011600' => 'ppe', 'Prupe.3G000800' => 'ppe', 'Prupe.3G001100' => 'ppe', 'Prupe.6G072700' => 'ppe', 'Prupe.6G072800' => 'ppe', 'Prupe.6G257300' => 'ppe', 'Prupe.8G033000' => 'ppe', 'Psat0s2633g0080' => 'psa', 'Psat0s3396g0080' => 'psa', 'Psat0s3396g0200' => 'psa', 'Psat3g139080' => 'psa', 'Psat5g285080' => 'psa', 'Psat6g157760' => 'psa', 'Psat6g208440' => 'psa', 'Psat7g215320' => 'psa', 'Psat7g215400' => 'psa', 'Psat7g235600' => 'psa', 'Psat7g235760' => 'psa', 'PSO063G4603' => 'pso', 'PSO210G0182' => 'pso', 'PSO210G0196' => 'pso', 'PSO339G0394' => 'pso', 'PSO339G4127' => 'pso', 'PSO513G0064' => 'pso', 'PSO761G0079' => 'pso', 'QL01p031003' => 'qlo', 'QL01p031078' => 'qlo', 'QL06p003004' => 'qlo', 'QL07p048731' => 'qlo', 'QL09p037427' => 'qlo', 'RcHm_v2.0_Chr3g0466361' => 'rch', 'RcHm_v2.0_Chr3g0485571' => 'rch', 'RcHm_v2.0_Chr4g0416551' => 'rch', 'RcHm_v2.0_Chr5g0065831' => 'rch', 'Rhsim01G0230500' => 'rsi', 'Rhsim05G0194000' => 'rsi', 'Rhsim08G0250400' => 'rsi', 'Sabra02G0131000' => 'sbr', 'Sabra06G0066300' => 'sbr', 'Sabra08G0115500' => 'sbr', 'Sabra09G0023900' => 'sbr', 'Sabra10G0054000' => 'sbr', 'Sabra14G0081500' => 'sbr', 'Sabra16G0147100' => 'sbr', 'SalBow2G2957' => 'sbo', 'SalBow4G3320' => 'sbo', 'SalBow8G1894' => 'sbo', 'Sc07g0007950' => 'sci', 'Sc12g0001360' => 'sci', 'Sc13g0004330' => 'sci', 'Sc20g0005010' => 'sci', 'Sed0000361' => 'sed', 'Sed0001706' => 'sed', 'Sed0002422' => 'sed', 'Sed0004029' => 'sed', 'Sed0004602' => 'sed', 'Sed0004943' => 'sed', 'Sed0008646' => 'sed', 'Sed0023313' => 'sed', 'Sed0024843' => 'sed', 'SEGI_00081' => 'sgi', 'SEGI_00947' => 'sgi', 'SEGI_04046' => 'sgi', 'SEGI_06880' => 'sgi', 'SEGI_09736' => 'sgi', 'SEGI_12741' => 'sgi', 'SEGI_14530' => 'sgi', 'SEGI_20705' => 'sgi', 'SEGI_26088' => 'sgi', 'SEGI_28323' => 'sgi', 'SEGI_33343' => 'sgi', 'SGA_v2.0_scaffold126G33775' => 'sas', 'SGA_v2.0_scaffold2G01337' => 'sas', 'SGA_v2.0_scaffold38G15006' => 'sas', 'SGA_v2.0_scaffold39G15264' => 'sas', 'SGA_v2.0_scaffold453G51880' => 'sas', 'SHI12696' => 'shi', 'SMO367G1096' => 'smo', 'Solyc01g068630.3' => 'sly', 'Solyc05g011880.3' => 'sly', 'Solyc06g076300.3' => 'sly', 'Solyc09g010940.4' => 'sly', 'Solyc09g075890.3' => 'sly', 'Sopen01g030560' => 'spe', 'Sopen05g006630' => 'spe', 'Sopen06g032720' => 'spe', 'Sopen09g005660' => 'spe', 'Sopen09g030690' => 'spe', 'Sp4g14540' => 'spa', 'Sp4g20030' => 'spa', 'Sp5g01320' => 'spa', 'Sp6g21170' => 'spa', 'Sp6g21180' => 'spa', 'Sp6g21190' => 'spa', 'Sp6g40220' => 'spa', 'TAR362G0122' => 'tar', 'TAR362G1338' => 'tar', 'TAR369G0590' => 'tar', 'TAR371G0824' => 'tar', 'TAR622G1429' => 'tar', 'TAR623G0734' => 'tar', 'TAR625G0441' => 'tar', 'TAR629G0976' => 'tar', 'TAR633G1195' => 'tar', 'TAR636G2660' => 'tar', 'THA.LOC104799440' => 'tha', 'THA.LOC104800966' => 'tha', 'THA.LOC104806559' => 'tha', 'THA.LOC104810765' => 'tha', 'THA.LOC104816266' => 'tha', 'THA.LOC104817419' => 'tha', 'THA.LOC104827021' => 'tha', 'Thecc.01G327400' => 'tca', 'Thecc.04G229200' => 'tca', 'Thecc.05G037400' => 'tca', 'Thecc.09G318600' => 'tca', 'Thecc.09G318700' => 'tca', 'Thhalv10006238m.g' => 'esa', 'Thhalv10014321m.g' => 'esa', 'Thhalv10014335m.g' => 'esa', 'Thhalv10015826m.g' => 'esa', 'Thhalv10017107m.g' => 'esa', 'Thhalv10017180m.g' => 'esa', 'Thhalv10029339m.g' => 'esa', 'TPR.G1699' => 'tpr', 'TPR.G23609' => 'tpr', 'TPR.G3081' => 'tpr', 'TPR.G40397' => 'tpr', 'TPR.G5522' => 'tpr', 'TPR.G5618' => 'tpr', 'TPR.G5626' => 'tpr', 'TWI09G1632' => 'twi', 'TWI23G1230' => 'twi', 'TWI53G1064' => 'twi', 'TWI59G0751' => 'twi', 'TWI74G0947' => 'twi', 'TWI77G0337' => 'twi', 'TWI79G1254' => 'twi', 'unitig_0.g2341' => 'ugi', 'unitig_26.g10006' => 'ugi', 'unitig_26.g10008' => 'ugi', 'unitig_26.g9192' => 'ugi', 'vmacro14547' => 'vma', 'vmacro15333' => 'vma', 'vmacro18743' => 'vma', 'vmacro20166' => 'vma', 'VMungo0331G0523' => 'vmu', 'VMungo0331G1202' => 'vmu', 'VMungo0720G1228' => 'vmu', 'VMungo0720G1514' => 'vmu', 'VMungo1080G0169' => 'vmu', 'VMungo1127G1475' => 'vmu', 'VMungo1383G1208' => 'vmu', 'VMungo1383G1698' => 'vmu', 'Zm00001eb012270' => 'zma', 'Zm00001eb054100' => 'zma', 'Zm00001eb063350' => 'zma', 'Zm00001eb328560' => 'zma', 'Zm00001eb342820' => 'zma', 'Zm00001eb362210' => 'zma', 'Zm00001eb397730' => 'zma', 'Zm00001eb399750' => 'zma' ), 'gf_id' => 'HOM05D000959', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000959' ), 'data_identifier' => 'HOM05D000959', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000959', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '622', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p07100' => 'bna', 'A03p11720' => 'bna', 'A05p08300' => 'bna', 'A05p13380' => 'bna', 'A09p54130' => 'bna', 'A10p16690' => 'bna', 'A10p16700' => 'bna', 'A10p33390' => 'bna', 'Aa31LG10G16020' => 'aar', 'Aa31LG1G11810' => 'aar', 'Aa31LG1G11830' => 'aar', 'Aa31LG1G22510' => 'aar', 'Aa31LG5G4890' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5793' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2310' => 'aag', 'Actinidia08499' => 'ach', 'Actinidia11262' => 'ach', 'Actinidia23926' => 'ach', 'Actinidia34420' => 'ach', 'Actinidia36970' => 'ach', 'Ah.02g111220' => 'amhyb', 'Ah.15g097750' => 'amhyb', 'AL4G27500' => 'aly', 'AL6G11470' => 'aly', 'AL8G35950' => 'aly', 'AL8G35960' => 'aly', 'AL8G35970' => 'aly', 'Aqoxy1G00912' => 'aox', 'Aqoxy2G02253' => 'aox', 'Aqoxy2G02411' => 'aox', 'Aqoxy5G00485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BZ66YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K8ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM4FUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6BF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HFV7XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25JBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0YNNV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MAKK6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P70IT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP2Z6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V61LZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YWP64R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3S9AI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7PGHH' => 'arhy', 'AT2G32150' => 'ath', 'AT3G62040' => 'ath', 'AT5G02230' => 'ath', 'AT5G59480' => 'ath', 'AT5G59490' => 'ath', 'ATR0332G060' => 'atr', 'ATR0559G190' => 'atr', 'ATR0693G294' => 'atr', 'Atru.chr3.3975' => 'acertr', 'Atru.chr3.3976' => 'acertr', 'Atru.chr3.3977' => 'acertr', 'Atru.chr4.2498' => 'acertr', 'Atru.chr5.838' => 'acertr', 'Atru.chr8.1990' => 'acertr', 'Atru.chr8.1991' => 'acertr', 'Atru.chr8.1992' => 'acertr', 'AUR62001759' => 'cqu', 'AUR62009545' => 'cqu', 'AUR62010474' => 'cqu', 'AUR62025820' => 'cqu', 'AUR62030422' => 'cqu', 'AUR62033605' => 'cqu', 'AUR62038615' => 'cqu', 'AUR62041347' => 'cqu', 'BcaB01g04574' => 'bca', 'BcaB02g09263' => 'bca', 'BcaB02g10453' => 'bca', 'BcaB05g22513' => 'bca', 'BcaB08g36253' => 'bca', 'BcaB08g36254' => 'bca', 'BcaC01g06519' => 'bca', 'BcaC02g11889' => 'bca', 'BcaC03g14010' => 'bca', 'BcaC03g18439' => 'bca', 'BcaC04g19765' => 'bca', 'BcaC09g48432' => 'bca', 'BcaNung07302' => 'bca', 'BolC2t06040H' => 'bol', 'BolC2t07346H' => 'bol', 'BolC3t13817H' => 'bol', 'BolC4t22625H' => 'bol', 'BolC4t23297H' => 'bol', 'BolC8t51278H' => 'bol', 'BolC9t58050H' => 'bol', 'BolC9t58051H' => 'bol', 'BolC9t60163H' => 'bol', 'BraA02t04712Z' => 'bra', 'BraA02t05791Z' => 'bra', 'BraA03t10483Z' => 'bra', 'BraA05t19795Z' => 'bra', 'BraA05t20276Z' => 'bra', 'BraA09t40827Z' => 'bra', 'BraA10t43750Z' => 'bra', 'BraA10t43751Z' => 'bra', 'BraA10t45370Z' => 'bra', 'C02p00400' => 'bna', 'C02p12460' => 'bna', 'C03p13680' => 'bna', 'C04p10270' => 'bna', 'C04p17500' => 'bna', 'C08p37010' => 'bna', 'C09p51880' => 'bna', 'C09p51890' => 'bna', 'C09p74300' => 'bna', 'CAN.G179.26' => 'can', 'CAN.G3384.1' => 'can', 'CAN.G394.68' => 'can', 'CAN.G907.13' => 'can', 'CANSAT11G0012' => 'cansat', 'CANSAT25G1586' => 'cansat', 'CANSAT35G0735' => 'cansat', 'CANSAT54G0556' => 'cansat', 'CANSAT64G0356' => 'cansat', 'CANSAT78G2042' => 'cansat', 'CARHR125920' => 'chi', 'CARHR131910' => 'chi', 'CARHR172390' => 'chi', 'CARHR211140' => 'chi', 'CARHR285850' => 'chi', 'CARHR285860' => 'chi', 'Carub.0004s1347' => 'cru', 'Carub.0004s1960' => 'cru', 'Carub.0005s2880' => 'cru', 'Carub.0006s0107' => 'cru', 'Carub.0008s2015' => 'cru', 'Carub.0008s2016' => 'cru', 'Carub.0008s2017' => 'cru', 'Ca_01315_v3' => 'car', 'Ca_05063_v3' => 'car', 'Ca_10231_v3' => 'car', 'Ca_10913_v3' => 'car', 'Ca_19156_v3' => 'car', 'Ca_23644_v3' => 'car', 'Ca_26735_v3' => 'car', 'Cc01_g13130' => 'ccan', 'Cc02_g21690' => 'ccan', 'Cc03_g03600' => 'ccan', 'Cc06_g02510' => 'ccan', 'CDE02G1265' => 'cde', 'CDE05G0415' => 'cde', 'CDE08G1082' => 'cde', 'Cfa005780' => 'cfa', 'Cfa011522' => 'cfa', 'Cfa011523' => 'cfa', 'Cfa015627' => 'cfa', 'Cfa017359' => 'cfa', 'Ciclev10005687m.g' => 'ccl', 'Ciclev10012173m.g' => 'ccl', 'Ciclev10021621m.g' => 'ccl', 'Ciclev10028968m.g' => 'ccl', 'Ciclev10029907m.g' => 'ccl', 'CiPaw.01G164800' => 'cil', 'CiPaw.07G083700' => 'cil', 'CiPaw.07G127000' => 'cil', 'CiPaw.07G136900' => 'cil', 'CiPaw.08G081700' => 'cil', 'CiPaw.09G194600' => 'cil', 'CiPaw.10G146500' => 'cil', 'CiPaw.13G091500' => 'cil', 'CiPaw.13G091600' => 'cil', 'ClCG00G003390' => 'cla', 'ClCG01G007220' => 'cla', 'ClCG03G001370' => 'cla', 'ClCG04G008100' => 'cla', 'ClCG06G006110' => 'cla', 'ClCG06G006130' => 'cla', 'ClCG10G021210' => 'cla', 'COL.COLO4_07648' => 'col', 'COL.COLO4_07650' => 'col', 'COL.COLO4_07651' => 'col', 'COL.COLO4_14780' => 'col', 'COL.COLO4_18546' => 'col', 'COL.COLO4_18547' => 'col', 'COL.COLO4_23103' => 'col', 'COL.COLO4_30419' => 'col', 'COL.COLO4_34232' => 'col', 'Cpa.g.sc169.20' => 'cpa', 'Cpa.g.sc57.45' => 'cpa', 'Cpa.g.sc58.124' => 'cpa', 'Cpa.g.sc58.125' => 'cpa', 'Cpa.g.sc81.118' => 'cpa', 'Cpa.g.sc81.119' => 'cpa', 'Cre12.g524700' => 'cre', 'CsaV3_1G034430' => 'csa', 'CsaV3_1G034440' => 'csa', 'CsaV3_1G034450' => 'csa', 'CsaV3_3G034830' => 'csa', 'CsaV3_4G025090' => 'csa', 'CsaV3_5G018660' => 'csa', 'CsaV3_6G038160' => 'csa', 'CSS0003447' => 'camsi', 'CSS0017840' => 'camsi', 'CSS0019260' => 'camsi', 'CSS0040375' => 'camsi', 'CSS0042533' => 'camsi', 'DCAR_005960' => 'dca', 'DCAR_012104' => 'dca', 'DCAR_012105' => 'dca', 'DCAR_012293' => 'dca', 'DCAR_015632' => 'dca', 'DCAR_024602' => 'dca', 'DCAR_028752' => 'dca', 'Dinv06261' => 'din', 'Dinv13982' => 'din', 'Dinv17029' => 'din', 'Dinv18463' => 'din', 'Dinv33181' => 'din', 'Dinv35585' => 'din', 'Dinv37161' => 'din', 'Dinv42977' => 'din', 'Dinv43122' => 'din', 'Dinv44517' => 'din', 'Duzib093G0256' => 'dzi', 'Duzib106G1254' => 'dzi', 'Duzib128G1789' => 'dzi', 'Duzib133G0633' => 'dzi', 'Duzib138G0510' => 'dzi', 'Duzib150G1084' => 'dzi', 'Duzib168G0488' => 'dzi', 'Duzib168G1523' => 'dzi', 'Duzib170G0133' => 'dzi', 'ECA234G1433' => 'eca', 'ECA236G1432' => 'eca', 'ECA236G2256' => 'eca', 'ECA236G2365' => 'eca', 'ECA236G4830' => 'eca', 'ECA248G1505' => 'eca', 'EL10Ac3g06431' => 'bvu', 'EL10Ac5g12577' => 'bvu', 'EL10Ac6g13533' => 'bvu', 'EL10Ac7g16045' => 'bvu', 'Eucgr.A01281' => 'egr', 'Eucgr.B02326' => 'egr', 'Eucgr.H03532' => 'egr', 'Eucgr.K00553' => 'egr', 'Eucgr.K03116' => 'egr', 'FAN02G3963' => 'fan', 'FAN05G0438' => 'fan', 'FAN09G2434' => 'fan', 'FAN12G3984' => 'fan', 'FAN14G0798' => 'fan', 'FAN17G0652' => 'fan', 'FAN19G1988' => 'fan', 'FAN22G0632' => 'fan', 'FAN23G0387' => 'fan', 'FAN26G1323' => 'fan', 'FAN28G0666' => 'fan', 'FvH4_1g26080' => 'fve', 'FvH4_3g36780' => 'fve', 'FvH4_4g15270' => 'fve', 'FvH4_6g13490' => 'fve', 'Glyma.01G098700' => 'gma', 'Glyma.03G065900' => 'gma', 'Glyma.03G073754' => 'gma', 'Glyma.03G073758' => 'gma', 'Glyma.03G083200' => 'gma', 'Glyma.03G225500' => 'gma', 'Glyma.05G037766' => 'gma', 'Glyma.07G133500' => 'gma', 'Glyma.10G139400' => 'gma', 'Glyma.10G248900' => 'gma', 'Glyma.11G137800' => 'gma', 'Glyma.12G061300' => 'gma', 'Glyma.13G337900' => 'gma', 'Glyma.15G036600' => 'gma', 'Glyma.18G182800' => 'gma', 'Glyma.19G222500' => 'gma', 'Glyma.20G144800' => 'gma', 'Gohir.A01G222000' => 'ghi', 'Gohir.A03G044000' => 'ghi', 'Gohir.A03G044100' => 'ghi', 'Gohir.A04G083100' => 'ghi', 'Gohir.A07G127200' => 'ghi', 'Gohir.A07G132400' => 'ghi', 'Gohir.A08G000700' => 'ghi', 'Gohir.A11G327300' => 'ghi', 'Gohir.D01G211500' => 'ghi', 'Gohir.D03G123400' => 'ghi', 'Gohir.D03G123500' => 'ghi', 'Gohir.D04G121800' => 'ghi', 'Gohir.D07G131500' => 'ghi', 'Gohir.D07G136600' => 'ghi', 'Gohir.D08G011600' => 'ghi', 'Gohir.D11G346200' => 'ghi', 'Gorai.001G142800' => 'gra', 'Gorai.001G148700' => 'gra', 'Gorai.002G257300' => 'gra', 'Gorai.003G130000' => 'gra', 'Gorai.003G130100' => 'gra', 'Gorai.004G005300' => 'gra', 'Gorai.007G376500' => 'gra', 'Gorai.012G104700' => 'gra', 'GSVIVG01017946001' => 'vvi', 'GSVIVG01024928001' => 'vvi', 'GSVIVG01028227001' => 'vvi', 'GSVIVG01034151001' => 'vvi', 'HanXRQChr05g0135031' => 'han', 'HanXRQChr05g0135041' => 'han', 'HanXRQChr05g0140021' => 'han', 'HanXRQChr06g0178981' => 'han', 'HanXRQChr07g0188251' => 'han', 'HanXRQChr08g0235311' => 'han', 'HanXRQChr09g0271011' => 'han', 'HanXRQChr10g0293321' => 'han', 'HanXRQChr13g0388171' => 'han', 'Haze_00916' => 'cav', 'Haze_05063' => 'cav', 'Haze_20814' => 'cav', 'Haze_24128' => 'cav', 'Hma1.2p1_0745F.1_g212010' => 'hma', 'Hma1.2p1_0757F.1_g213260' => 'hma', 'Hma1.2p1_0936F.1_g238840' => 'hma', 'Hma1.2p1_1735F.1_g299890' => 'hma', 'Hma1.2p1_1861F.1_g305685' => 'hma', 'HPP92_003397' => 'vpl', 'HPP92_012597' => 'vpl', 'HPP92_015520' => 'vpl', 'HPP92_015539' => 'vpl', 'HPP92_020373' => 'vpl', 'Hund04938' => 'sun', 'Hund10677' => 'sun', 'Hund11033' => 'sun', 'Hund12155' => 'sun', 'Lalb_Chr01g0022551' => 'lal', 'Lalb_Chr03g0042341' => 'lal', 'Lalb_Chr07g0192931' => 'lal', 'Lalb_Chr12g0209551' => 'lal', 'Lalb_Chr19g0125251' => 'lal', 'Lalb_Chr19g0137891' => 'lal', 'Lalb_Chr21g0304641' => 'lal', 'Lalb_Chr21g0309881' => 'lal', 'Lj1A5T12' => 'lonja', 'Lj1C148G10' => 'lonja', 'Lj2A93T83' => 'lonja', 'Lj3A738G68' => 'lonja', 'Lj3C966T1' => 'lonja', 'Lj3g0018958' => 'lja', 'Lj3g0021831' => 'lja', 'Lj3g0025443' => 'lja', 'Lj4g0026809' => 'lja', 'Lj5g0012558' => 'lja', 'Lj5g0021586' => 'lja', 'Lsat_1_v5_gn_5_156840' => 'lsa', 'Lsat_1_v5_gn_8_73460' => 'lsa', 'Lsat_1_v5_gn_8_73481' => 'lsa', 'Lsat_1_v5_gn_9_31601' => 'lsa', 'Lsat_1_v5_gn_9_77320' => 'lsa', 'Manes.01G171300' => 'mes', 'Manes.01G171400' => 'mes', 'Manes.01G236100' => 'mes', 'Manes.02G130500' => 'mes', 'Manes.02G130600' => 'mes', 'Manes.03G180200' => 'mes', 'Manes.05G007000' => 'mes', 'Manes.08G084400' => 'mes', 'Manes.09G092600' => 'mes', 'Manes.15G027900' => 'mes', 'MBI04_g40948_MAGBIO' => 'mbi', 'MBI14_g12123_MAGBIO' => 'mbi', 'MBI18_g28915_MAGBIO' => 'mbi', 'MCO09G053' => 'mco', 'MCO11G782' => 'mco', 'MCO15G215' => 'mco', 'MD03G1088500' => 'mdo', 'MD03G1088600' => 'mdo', 'MD04G1130800' => 'mdo', 'MD09G1291700' => 'mdo', 'MD11G1097500' => 'mdo', 'MD11G1097600' => 'mdo', 'MD12G1143900' => 'mdo', 'MD13G1191400' => 'mdo', 'MD16G1191500' => 'mdo', 'Medtr1g085570' => 'mtr', 'Medtr1g104610' => 'mtr', 'Medtr2g097520' => 'mtr', 'Medtr4g021800' => 'mtr', 'Medtr4g021825' => 'mtr', 'Medtr4g064270' => 'mtr', 'Medtr4g064380' => 'mtr', 'Medtr7g062150' => 'mtr', 'MELO3C003138.2' => 'cme', 'MELO3C005187.2' => 'cme', 'MELO3C009252.2' => 'cme', 'MELO3C014481.2' => 'cme', 'MELO3C020616.2' => 'cme', 'MELO3C020617.2' => 'cme', 'MELO3C020618.2' => 'cme', 'Migut.G00328' => 'egut', 'Migut.J00320' => 'egut', 'Migut.L01000' => 'egut', 'Migut.L01953' => 'egut', 'MSTRG.10253' => 'ama', 'MSTRG.19077' => 'ama', 'MSTRG.26780' => 'ama', 'MSTRG.4023' => 'ama', 'MSTRG.5655' => 'ama', 'MSTRG.9992' => 'ama', 'Nitab4.5_0000043g0310' => 'nta', 'Nitab4.5_0000463g0080' => 'nta', 'Nitab4.5_0000705g0170' => 'nta', 'Nitab4.5_0001326g0060' => 'nta', 'Nitab4.5_0001628g0030' => 'nta', 'Nitab4.5_0002103g0110' => 'nta', 'Nitab4.5_0002946g0030' => 'nta', 'Nitab4.5_0004639g0030' => 'nta', 'Nn2g11149' => 'nnu', 'Nn2g13389' => 'nnu', 'Nn4g25326' => 'nnu', 'Nn4g26290' => 'nnu', 'Nn5g29865' => 'nnu', 'Oeu004163.1' => 'oeu', 'Oeu006901.1' => 'oeu', 'Oeu010096.1' => 'oeu', 'Oeu024340.1' => 'oeu', 'Oeu048369.1' => 'oeu', 'Os01g0973000' => 'osa', 'Os03g0273800' => 'osa', 'Os03g0701200' => 'osa', 'Os03g0834050' => 'osa', 'Os07g0634400' => 'osa', 'Peaxi162Scf00092g01414' => 'pax', 'Peaxi162Scf00165g00818' => 'pax', 'Peaxi162Scf00309g00516' => 'pax', 'Peaxi162Scf00774g00218' => 'pax', 'PGR004G1824' => 'pgr', 'PGR004G2606' => 'pgr', 'PGR031G2716' => 'pgr', 'PGR102G2460' => 'pgr', 'PGR142G2599' => 'pgr', 'PGSC0003DMG400000843' => 'stu', 'PGSC0003DMG400008829' => 'stu', 'PGSC0003DMG400030418' => 'stu', 'PGSC0003DMG400031834' => 'stu', 'PGSC0003DMG401028300' => 'stu', 'PGSC0003DMG402028300' => 'stu', 'Phvul.001G219300' => 'pvu', 'Phvul.007G056000' => 'pvu', 'Phvul.007G208000' => 'pvu', 'Phvul.008G119500' => 'pvu', 'Phvul.010G011200' => 'pvu', 'Phvul.010G014800' => 'pvu', 'Phvul.011G062900' => 'pvu', 'Phvul.L007043' => 'pvu', 'Potri.001G242300' => 'ptr', 'Potri.002G185300' => 'ptr', 'Potri.006G086900' => 'ptr', 'Potri.008G151700' => 'ptr', 'Potri.009G033500' => 'ptr', 'Potri.010G089300' => 'ptr', 'Potri.014G110800' => 'ptr', 'Pp3c27_8130' => 'ppa', 'Pp3c6_27410' => 'ppa', 'PRCOL_00001659' => 'pco', 'PRCOL_00001927' => 'pco', 'PRCOL_00003649' => 'pco', 'Prupe.1G011600' => 'ppe', 'Prupe.3G000800' => 'ppe', 'Prupe.3G001100' => 'ppe', 'Prupe.6G072700' => 'ppe', 'Prupe.6G072800' => 'ppe', 'Prupe.6G257300' => 'ppe', 'Prupe.8G033000' => 'ppe', 'Psat0s2633g0080' => 'psa', 'Psat0s3396g0080' => 'psa', 'Psat0s3396g0200' => 'psa', 'Psat3g139080' => 'psa', 'Psat5g285080' => 'psa', 'Psat6g157760' => 'psa', 'Psat6g208440' => 'psa', 'Psat7g215320' => 'psa', 'Psat7g215400' => 'psa', 'Psat7g235600' => 'psa', 'Psat7g235760' => 'psa', 'PSO063G4603' => 'pso', 'PSO210G0182' => 'pso', 'PSO210G0196' => 'pso', 'PSO339G0394' => 'pso', 'PSO339G4127' => 'pso', 'PSO513G0064' => 'pso', 'PSO761G0079' => 'pso', 'QL01p031003' => 'qlo', 'QL01p031078' => 'qlo', 'QL06p003004' => 'qlo', 'QL07p048731' => 'qlo', 'QL09p037427' => 'qlo', 'RcHm_v2.0_Chr3g0466361' => 'rch', 'RcHm_v2.0_Chr3g0485571' => 'rch', 'RcHm_v2.0_Chr4g0416551' => 'rch', 'RcHm_v2.0_Chr5g0065831' => 'rch', 'Rhsim01G0230500' => 'rsi', 'Rhsim05G0194000' => 'rsi', 'Rhsim08G0250400' => 'rsi', 'Sabra02G0131000' => 'sbr', 'Sabra06G0066300' => 'sbr', 'Sabra08G0115500' => 'sbr', 'Sabra09G0023900' => 'sbr', 'Sabra10G0054000' => 'sbr', 'Sabra14G0081500' => 'sbr', 'Sabra16G0147100' => 'sbr', 'SalBow2G2957' => 'sbo', 'SalBow4G3320' => 'sbo', 'SalBow8G1894' => 'sbo', 'Sc07g0007950' => 'sci', 'Sc12g0001360' => 'sci', 'Sc13g0004330' => 'sci', 'Sc20g0005010' => 'sci', 'Sed0000361' => 'sed', 'Sed0001706' => 'sed', 'Sed0002422' => 'sed', 'Sed0004029' => 'sed', 'Sed0004602' => 'sed', 'Sed0004943' => 'sed', 'Sed0008646' => 'sed', 'Sed0023313' => 'sed', 'Sed0024843' => 'sed', 'SEGI_00081' => 'sgi', 'SEGI_00947' => 'sgi', 'SEGI_04046' => 'sgi', 'SEGI_06880' => 'sgi', 'SEGI_09736' => 'sgi', 'SEGI_12741' => 'sgi', 'SEGI_14530' => 'sgi', 'SEGI_20705' => 'sgi', 'SEGI_26088' => 'sgi', 'SEGI_28323' => 'sgi', 'SEGI_33343' => 'sgi', 'SGA_v2.0_scaffold126G33775' => 'sas', 'SGA_v2.0_scaffold2G01337' => 'sas', 'SGA_v2.0_scaffold38G15006' => 'sas', 'SGA_v2.0_scaffold39G15264' => 'sas', 'SGA_v2.0_scaffold453G51880' => 'sas', 'SHI12696' => 'shi', 'SMO367G1096' => 'smo', 'Solyc01g068630.3' => 'sly', 'Solyc05g011880.3' => 'sly', 'Solyc06g076300.3' => 'sly', 'Solyc09g010940.4' => 'sly', 'Solyc09g075890.3' => 'sly', 'Sopen01g030560' => 'spe', 'Sopen05g006630' => 'spe', 'Sopen06g032720' => 'spe', 'Sopen09g005660' => 'spe', 'Sopen09g030690' => 'spe', 'Sp4g14540' => 'spa', 'Sp4g20030' => 'spa', 'Sp5g01320' => 'spa', 'Sp6g21170' => 'spa', 'Sp6g21180' => 'spa', 'Sp6g21190' => 'spa', 'Sp6g40220' => 'spa', 'TAR362G0122' => 'tar', 'TAR362G1338' => 'tar', 'TAR369G0590' => 'tar', 'TAR371G0824' => 'tar', 'TAR622G1429' => 'tar', 'TAR623G0734' => 'tar', 'TAR625G0441' => 'tar', 'TAR629G0976' => 'tar', 'TAR633G1195' => 'tar', 'TAR636G2660' => 'tar', 'THA.LOC104799440' => 'tha', 'THA.LOC104800966' => 'tha', 'THA.LOC104806559' => 'tha', 'THA.LOC104810765' => 'tha', 'THA.LOC104816266' => 'tha', 'THA.LOC104817419' => 'tha', 'THA.LOC104827021' => 'tha', 'Thecc.01G327400' => 'tca', 'Thecc.04G229200' => 'tca', 'Thecc.05G037400' => 'tca', 'Thecc.09G318600' => 'tca', 'Thecc.09G318700' => 'tca', 'Thhalv10006238m.g' => 'esa', 'Thhalv10014321m.g' => 'esa', 'Thhalv10014335m.g' => 'esa', 'Thhalv10015826m.g' => 'esa', 'Thhalv10017107m.g' => 'esa', 'Thhalv10017180m.g' => 'esa', 'Thhalv10029339m.g' => 'esa', 'TPR.G1699' => 'tpr', 'TPR.G23609' => 'tpr', 'TPR.G3081' => 'tpr', 'TPR.G40397' => 'tpr', 'TPR.G5522' => 'tpr', 'TPR.G5618' => 'tpr', 'TPR.G5626' => 'tpr', 'TWI09G1632' => 'twi', 'TWI23G1230' => 'twi', 'TWI53G1064' => 'twi', 'TWI59G0751' => 'twi', 'TWI74G0947' => 'twi', 'TWI77G0337' => 'twi', 'TWI79G1254' => 'twi', 'unitig_0.g2341' => 'ugi', 'unitig_26.g10006' => 'ugi', 'unitig_26.g10008' => 'ugi', 'unitig_26.g9192' => 'ugi', 'vmacro14547' => 'vma', 'vmacro15333' => 'vma', 'vmacro18743' => 'vma', 'vmacro20166' => 'vma', 'VMungo0331G0523' => 'vmu', 'VMungo0331G1202' => 'vmu', 'VMungo0720G1228' => 'vmu', 'VMungo0720G1514' => 'vmu', 'VMungo1080G0169' => 'vmu', 'VMungo1127G1475' => 'vmu', 'VMungo1383G1208' => 'vmu', 'VMungo1383G1698' => 'vmu', 'Zm00001eb012270' => 'zma', 'Zm00001eb054100' => 'zma', 'Zm00001eb063350' => 'zma', 'Zm00001eb328560' => 'zma', 'Zm00001eb342820' => 'zma', 'Zm00001eb362210' => 'zma', 'Zm00001eb397730' => 'zma', 'Zm00001eb399750' => 'zma' ) $gf_id = 'HOM05D000959' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000959' ) $data_identifier = 'HOM05D000959' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 5, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 5, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 10, 'mbi' => (int) 3, 'mco' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 2, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 3, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 11, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399750' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000959', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '622', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p07100' => 'bna', 'A03p11720' => 'bna', 'A05p08300' => 'bna', 'A05p13380' => 'bna', 'A09p54130' => 'bna', 'A10p16690' => 'bna', 'A10p16700' => 'bna', 'A10p33390' => 'bna', 'Aa31LG10G16020' => 'aar', 'Aa31LG1G11810' => 'aar', 'Aa31LG1G11830' => 'aar', 'Aa31LG1G22510' => 'aar', 'Aa31LG5G4890' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5793' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2310' => 'aag', 'Actinidia08499' => 'ach', 'Actinidia11262' => 'ach', 'Actinidia23926' => 'ach', 'Actinidia34420' => 'ach', 'Actinidia36970' => 'ach', 'Ah.02g111220' => 'amhyb', 'Ah.15g097750' => 'amhyb', 'AL4G27500' => 'aly', 'AL6G11470' => 'aly', 'AL8G35950' => 'aly', 'AL8G35960' => 'aly', 'AL8G35970' => 'aly', 'Aqoxy1G00912' => 'aox', 'Aqoxy2G02253' => 'aox', 'Aqoxy2G02411' => 'aox', 'Aqoxy5G00485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BZ66YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K8ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM4FUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6BF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HFV7XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25JBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0YNNV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MAKK6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P70IT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP2Z6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V61LZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YWP64R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3S9AI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7PGHH' => 'arhy', 'AT2G32150' => 'ath', 'AT3G62040' => 'ath', 'AT5G02230' => 'ath', 'AT5G59480' => 'ath', 'AT5G59490' => 'ath', 'ATR0332G060' => 'atr', 'ATR0559G190' => 'atr', 'ATR0693G294' => 'atr', 'Atru.chr3.3975' => 'acertr', 'Atru.chr3.3976' => 'acertr', 'Atru.chr3.3977' => 'acertr', 'Atru.chr4.2498' => 'acertr', 'Atru.chr5.838' => 'acertr', 'Atru.chr8.1990' => 'acertr', 'Atru.chr8.1991' => 'acertr', 'Atru.chr8.1992' => 'acertr', 'AUR62001759' => 'cqu', 'AUR62009545' => 'cqu', 'AUR62010474' => 'cqu', 'AUR62025820' => 'cqu', 'AUR62030422' => 'cqu', 'AUR62033605' => 'cqu', 'AUR62038615' => 'cqu', 'AUR62041347' => 'cqu', 'BcaB01g04574' => 'bca', 'BcaB02g09263' => 'bca', 'BcaB02g10453' => 'bca', 'BcaB05g22513' => 'bca', 'BcaB08g36253' => 'bca', 'BcaB08g36254' => 'bca', 'BcaC01g06519' => 'bca', 'BcaC02g11889' => 'bca', 'BcaC03g14010' => 'bca', 'BcaC03g18439' => 'bca', 'BcaC04g19765' => 'bca', 'BcaC09g48432' => 'bca', 'BcaNung07302' => 'bca', 'BolC2t06040H' => 'bol', 'BolC2t07346H' => 'bol', 'BolC3t13817H' => 'bol', 'BolC4t22625H' => 'bol', 'BolC4t23297H' => 'bol', 'BolC8t51278H' => 'bol', 'BolC9t58050H' => 'bol', 'BolC9t58051H' => 'bol', 'BolC9t60163H' => 'bol', 'BraA02t04712Z' => 'bra', 'BraA02t05791Z' => 'bra', 'BraA03t10483Z' => 'bra', 'BraA05t19795Z' => 'bra', 'BraA05t20276Z' => 'bra', 'BraA09t40827Z' => 'bra', 'BraA10t43750Z' => 'bra', 'BraA10t43751Z' => 'bra', 'BraA10t45370Z' => 'bra', 'C02p00400' => 'bna', 'C02p12460' => 'bna', 'C03p13680' => 'bna', 'C04p10270' => 'bna', 'C04p17500' => 'bna', 'C08p37010' => 'bna', 'C09p51880' => 'bna', 'C09p51890' => 'bna', 'C09p74300' => 'bna', 'CAN.G179.26' => 'can', 'CAN.G3384.1' => 'can', 'CAN.G394.68' => 'can', 'CAN.G907.13' => 'can', 'CANSAT11G0012' => 'cansat', 'CANSAT25G1586' => 'cansat', 'CANSAT35G0735' => 'cansat', 'CANSAT54G0556' => 'cansat', 'CANSAT64G0356' => 'cansat', 'CANSAT78G2042' => 'cansat', 'CARHR125920' => 'chi', 'CARHR131910' => 'chi', 'CARHR172390' => 'chi', 'CARHR211140' => 'chi', 'CARHR285850' => 'chi', 'CARHR285860' => 'chi', 'Carub.0004s1347' => 'cru', 'Carub.0004s1960' => 'cru', 'Carub.0005s2880' => 'cru', 'Carub.0006s0107' => 'cru', 'Carub.0008s2015' => 'cru', 'Carub.0008s2016' => 'cru', 'Carub.0008s2017' => 'cru', 'Ca_01315_v3' => 'car', 'Ca_05063_v3' => 'car', 'Ca_10231_v3' => 'car', 'Ca_10913_v3' => 'car', 'Ca_19156_v3' => 'car', 'Ca_23644_v3' => 'car', 'Ca_26735_v3' => 'car', 'Cc01_g13130' => 'ccan', 'Cc02_g21690' => 'ccan', 'Cc03_g03600' => 'ccan', 'Cc06_g02510' => 'ccan', 'CDE02G1265' => 'cde', 'CDE05G0415' => 'cde', 'CDE08G1082' => 'cde', 'Cfa005780' => 'cfa', 'Cfa011522' => 'cfa', 'Cfa011523' => 'cfa', 'Cfa015627' => 'cfa', 'Cfa017359' => 'cfa', 'Ciclev10005687m.g' => 'ccl', 'Ciclev10012173m.g' => 'ccl', 'Ciclev10021621m.g' => 'ccl', 'Ciclev10028968m.g' => 'ccl', 'Ciclev10029907m.g' => 'ccl', 'CiPaw.01G164800' => 'cil', 'CiPaw.07G083700' => 'cil', 'CiPaw.07G127000' => 'cil', 'CiPaw.07G136900' => 'cil', 'CiPaw.08G081700' => 'cil', 'CiPaw.09G194600' => 'cil', 'CiPaw.10G146500' => 'cil', 'CiPaw.13G091500' => 'cil', 'CiPaw.13G091600' => 'cil', 'ClCG00G003390' => 'cla', 'ClCG01G007220' => 'cla', 'ClCG03G001370' => 'cla', 'ClCG04G008100' => 'cla', 'ClCG06G006110' => 'cla', 'ClCG06G006130' => 'cla', 'ClCG10G021210' => 'cla', 'COL.COLO4_07648' => 'col', 'COL.COLO4_07650' => 'col', 'COL.COLO4_07651' => 'col', 'COL.COLO4_14780' => 'col', 'COL.COLO4_18546' => 'col', 'COL.COLO4_18547' => 'col', 'COL.COLO4_23103' => 'col', 'COL.COLO4_30419' => 'col', 'COL.COLO4_34232' => 'col', 'Cpa.g.sc169.20' => 'cpa', 'Cpa.g.sc57.45' => 'cpa', 'Cpa.g.sc58.124' => 'cpa', 'Cpa.g.sc58.125' => 'cpa', 'Cpa.g.sc81.118' => 'cpa', 'Cpa.g.sc81.119' => 'cpa', 'Cre12.g524700' => 'cre', 'CsaV3_1G034430' => 'csa', 'CsaV3_1G034440' => 'csa', 'CsaV3_1G034450' => 'csa', 'CsaV3_3G034830' => 'csa', 'CsaV3_4G025090' => 'csa', 'CsaV3_5G018660' => 'csa', 'CsaV3_6G038160' => 'csa', 'CSS0003447' => 'camsi', 'CSS0017840' => 'camsi', 'CSS0019260' => 'camsi', 'CSS0040375' => 'camsi', 'CSS0042533' => 'camsi', 'DCAR_005960' => 'dca', 'DCAR_012104' => 'dca', 'DCAR_012105' => 'dca', 'DCAR_012293' => 'dca', 'DCAR_015632' => 'dca', 'DCAR_024602' => 'dca', 'DCAR_028752' => 'dca', 'Dinv06261' => 'din', 'Dinv13982' => 'din', 'Dinv17029' => 'din', 'Dinv18463' => 'din', 'Dinv33181' => 'din', 'Dinv35585' => 'din', 'Dinv37161' => 'din', 'Dinv42977' => 'din', 'Dinv43122' => 'din', 'Dinv44517' => 'din', 'Duzib093G0256' => 'dzi', 'Duzib106G1254' => 'dzi', 'Duzib128G1789' => 'dzi', 'Duzib133G0633' => 'dzi', 'Duzib138G0510' => 'dzi', 'Duzib150G1084' => 'dzi', 'Duzib168G0488' => 'dzi', 'Duzib168G1523' => 'dzi', 'Duzib170G0133' => 'dzi', 'ECA234G1433' => 'eca', 'ECA236G1432' => 'eca', 'ECA236G2256' => 'eca', 'ECA236G2365' => 'eca', 'ECA236G4830' => 'eca', 'ECA248G1505' => 'eca', 'EL10Ac3g06431' => 'bvu', 'EL10Ac5g12577' => 'bvu', 'EL10Ac6g13533' => 'bvu', 'EL10Ac7g16045' => 'bvu', 'Eucgr.A01281' => 'egr', 'Eucgr.B02326' => 'egr', 'Eucgr.H03532' => 'egr', 'Eucgr.K00553' => 'egr', 'Eucgr.K03116' => 'egr', 'FAN02G3963' => 'fan', 'FAN05G0438' => 'fan', 'FAN09G2434' => 'fan', 'FAN12G3984' => 'fan', 'FAN14G0798' => 'fan', 'FAN17G0652' => 'fan', 'FAN19G1988' => 'fan', 'FAN22G0632' => 'fan', 'FAN23G0387' => 'fan', 'FAN26G1323' => 'fan', 'FAN28G0666' => 'fan', 'FvH4_1g26080' => 'fve', 'FvH4_3g36780' => 'fve', 'FvH4_4g15270' => 'fve', 'FvH4_6g13490' => 'fve', 'Glyma.01G098700' => 'gma', 'Glyma.03G065900' => 'gma', 'Glyma.03G073754' => 'gma', 'Glyma.03G073758' => 'gma', 'Glyma.03G083200' => 'gma', 'Glyma.03G225500' => 'gma', 'Glyma.05G037766' => 'gma', 'Glyma.07G133500' => 'gma', 'Glyma.10G139400' => 'gma', 'Glyma.10G248900' => 'gma', 'Glyma.11G137800' => 'gma', 'Glyma.12G061300' => 'gma', 'Glyma.13G337900' => 'gma', 'Glyma.15G036600' => 'gma', 'Glyma.18G182800' => 'gma', 'Glyma.19G222500' => 'gma', 'Glyma.20G144800' => 'gma', 'Gohir.A01G222000' => 'ghi', 'Gohir.A03G044000' => 'ghi', 'Gohir.A03G044100' => 'ghi', 'Gohir.A04G083100' => 'ghi', 'Gohir.A07G127200' => 'ghi', 'Gohir.A07G132400' => 'ghi', 'Gohir.A08G000700' => 'ghi', 'Gohir.A11G327300' => 'ghi', 'Gohir.D01G211500' => 'ghi', 'Gohir.D03G123400' => 'ghi', 'Gohir.D03G123500' => 'ghi', 'Gohir.D04G121800' => 'ghi', 'Gohir.D07G131500' => 'ghi', 'Gohir.D07G136600' => 'ghi', 'Gohir.D08G011600' => 'ghi', 'Gohir.D11G346200' => 'ghi', 'Gorai.001G142800' => 'gra', 'Gorai.001G148700' => 'gra', 'Gorai.002G257300' => 'gra', 'Gorai.003G130000' => 'gra', 'Gorai.003G130100' => 'gra', 'Gorai.004G005300' => 'gra', 'Gorai.007G376500' => 'gra', 'Gorai.012G104700' => 'gra', 'GSVIVG01017946001' => 'vvi', 'GSVIVG01024928001' => 'vvi', 'GSVIVG01028227001' => 'vvi', 'GSVIVG01034151001' => 'vvi', 'HanXRQChr05g0135031' => 'han', 'HanXRQChr05g0135041' => 'han', 'HanXRQChr05g0140021' => 'han', 'HanXRQChr06g0178981' => 'han', 'HanXRQChr07g0188251' => 'han', 'HanXRQChr08g0235311' => 'han', 'HanXRQChr09g0271011' => 'han', 'HanXRQChr10g0293321' => 'han', 'HanXRQChr13g0388171' => 'han', 'Haze_00916' => 'cav', 'Haze_05063' => 'cav', 'Haze_20814' => 'cav', 'Haze_24128' => 'cav', 'Hma1.2p1_0745F.1_g212010' => 'hma', 'Hma1.2p1_0757F.1_g213260' => 'hma', 'Hma1.2p1_0936F.1_g238840' => 'hma', 'Hma1.2p1_1735F.1_g299890' => 'hma', 'Hma1.2p1_1861F.1_g305685' => 'hma', 'HPP92_003397' => 'vpl', 'HPP92_012597' => 'vpl', 'HPP92_015520' => 'vpl', 'HPP92_015539' => 'vpl', 'HPP92_020373' => 'vpl', 'Hund04938' => 'sun', 'Hund10677' => 'sun', 'Hund11033' => 'sun', 'Hund12155' => 'sun', 'Lalb_Chr01g0022551' => 'lal', 'Lalb_Chr03g0042341' => 'lal', 'Lalb_Chr07g0192931' => 'lal', 'Lalb_Chr12g0209551' => 'lal', 'Lalb_Chr19g0125251' => 'lal', 'Lalb_Chr19g0137891' => 'lal', 'Lalb_Chr21g0304641' => 'lal', 'Lalb_Chr21g0309881' => 'lal', 'Lj1A5T12' => 'lonja', 'Lj1C148G10' => 'lonja', 'Lj2A93T83' => 'lonja', 'Lj3A738G68' => 'lonja', 'Lj3C966T1' => 'lonja', 'Lj3g0018958' => 'lja', 'Lj3g0021831' => 'lja', 'Lj3g0025443' => 'lja', 'Lj4g0026809' => 'lja', 'Lj5g0012558' => 'lja', 'Lj5g0021586' => 'lja', 'Lsat_1_v5_gn_5_156840' => 'lsa', 'Lsat_1_v5_gn_8_73460' => 'lsa', 'Lsat_1_v5_gn_8_73481' => 'lsa', 'Lsat_1_v5_gn_9_31601' => 'lsa', 'Lsat_1_v5_gn_9_77320' => 'lsa', 'Manes.01G171300' => 'mes', 'Manes.01G171400' => 'mes', 'Manes.01G236100' => 'mes', 'Manes.02G130500' => 'mes', 'Manes.02G130600' => 'mes', 'Manes.03G180200' => 'mes', 'Manes.05G007000' => 'mes', 'Manes.08G084400' => 'mes', 'Manes.09G092600' => 'mes', 'Manes.15G027900' => 'mes', 'MBI04_g40948_MAGBIO' => 'mbi', 'MBI14_g12123_MAGBIO' => 'mbi', 'MBI18_g28915_MAGBIO' => 'mbi', 'MCO09G053' => 'mco', 'MCO11G782' => 'mco', 'MCO15G215' => 'mco', 'MD03G1088500' => 'mdo', 'MD03G1088600' => 'mdo', 'MD04G1130800' => 'mdo', 'MD09G1291700' => 'mdo', 'MD11G1097500' => 'mdo', 'MD11G1097600' => 'mdo', 'MD12G1143900' => 'mdo', 'MD13G1191400' => 'mdo', 'MD16G1191500' => 'mdo', 'Medtr1g085570' => 'mtr', 'Medtr1g104610' => 'mtr', 'Medtr2g097520' => 'mtr', 'Medtr4g021800' => 'mtr', 'Medtr4g021825' => 'mtr', 'Medtr4g064270' => 'mtr', 'Medtr4g064380' => 'mtr', 'Medtr7g062150' => 'mtr', 'MELO3C003138.2' => 'cme', 'MELO3C005187.2' => 'cme', 'MELO3C009252.2' => 'cme', 'MELO3C014481.2' => 'cme', 'MELO3C020616.2' => 'cme', 'MELO3C020617.2' => 'cme', 'MELO3C020618.2' => 'cme', 'Migut.G00328' => 'egut', 'Migut.J00320' => 'egut', 'Migut.L01000' => 'egut', 'Migut.L01953' => 'egut', 'MSTRG.10253' => 'ama', 'MSTRG.19077' => 'ama', 'MSTRG.26780' => 'ama', 'MSTRG.4023' => 'ama', 'MSTRG.5655' => 'ama', 'MSTRG.9992' => 'ama', 'Nitab4.5_0000043g0310' => 'nta', 'Nitab4.5_0000463g0080' => 'nta', 'Nitab4.5_0000705g0170' => 'nta', 'Nitab4.5_0001326g0060' => 'nta', 'Nitab4.5_0001628g0030' => 'nta', 'Nitab4.5_0002103g0110' => 'nta', 'Nitab4.5_0002946g0030' => 'nta', 'Nitab4.5_0004639g0030' => 'nta', 'Nn2g11149' => 'nnu', 'Nn2g13389' => 'nnu', 'Nn4g25326' => 'nnu', 'Nn4g26290' => 'nnu', 'Nn5g29865' => 'nnu', 'Oeu004163.1' => 'oeu', 'Oeu006901.1' => 'oeu', 'Oeu010096.1' => 'oeu', 'Oeu024340.1' => 'oeu', 'Oeu048369.1' => 'oeu', 'Os01g0973000' => 'osa', 'Os03g0273800' => 'osa', 'Os03g0701200' => 'osa', 'Os03g0834050' => 'osa', 'Os07g0634400' => 'osa', 'Peaxi162Scf00092g01414' => 'pax', 'Peaxi162Scf00165g00818' => 'pax', 'Peaxi162Scf00309g00516' => 'pax', 'Peaxi162Scf00774g00218' => 'pax', 'PGR004G1824' => 'pgr', 'PGR004G2606' => 'pgr', 'PGR031G2716' => 'pgr', 'PGR102G2460' => 'pgr', 'PGR142G2599' => 'pgr', 'PGSC0003DMG400000843' => 'stu', 'PGSC0003DMG400008829' => 'stu', 'PGSC0003DMG400030418' => 'stu', 'PGSC0003DMG400031834' => 'stu', 'PGSC0003DMG401028300' => 'stu', 'PGSC0003DMG402028300' => 'stu', 'Phvul.001G219300' => 'pvu', 'Phvul.007G056000' => 'pvu', 'Phvul.007G208000' => 'pvu', 'Phvul.008G119500' => 'pvu', 'Phvul.010G011200' => 'pvu', 'Phvul.010G014800' => 'pvu', 'Phvul.011G062900' => 'pvu', 'Phvul.L007043' => 'pvu', 'Potri.001G242300' => 'ptr', 'Potri.002G185300' => 'ptr', 'Potri.006G086900' => 'ptr', 'Potri.008G151700' => 'ptr', 'Potri.009G033500' => 'ptr', 'Potri.010G089300' => 'ptr', 'Potri.014G110800' => 'ptr', 'Pp3c27_8130' => 'ppa', 'Pp3c6_27410' => 'ppa', 'PRCOL_00001659' => 'pco', 'PRCOL_00001927' => 'pco', 'PRCOL_00003649' => 'pco', 'Prupe.1G011600' => 'ppe', 'Prupe.3G000800' => 'ppe', 'Prupe.3G001100' => 'ppe', 'Prupe.6G072700' => 'ppe', 'Prupe.6G072800' => 'ppe', 'Prupe.6G257300' => 'ppe', 'Prupe.8G033000' => 'ppe', 'Psat0s2633g0080' => 'psa', 'Psat0s3396g0080' => 'psa', 'Psat0s3396g0200' => 'psa', 'Psat3g139080' => 'psa', 'Psat5g285080' => 'psa', 'Psat6g157760' => 'psa', 'Psat6g208440' => 'psa', 'Psat7g215320' => 'psa', 'Psat7g215400' => 'psa', 'Psat7g235600' => 'psa', 'Psat7g235760' => 'psa', 'PSO063G4603' => 'pso', 'PSO210G0182' => 'pso', 'PSO210G0196' => 'pso', 'PSO339G0394' => 'pso', 'PSO339G4127' => 'pso', 'PSO513G0064' => 'pso', 'PSO761G0079' => 'pso', 'QL01p031003' => 'qlo', 'QL01p031078' => 'qlo', 'QL06p003004' => 'qlo', 'QL07p048731' => 'qlo', 'QL09p037427' => 'qlo', 'RcHm_v2.0_Chr3g0466361' => 'rch', 'RcHm_v2.0_Chr3g0485571' => 'rch', 'RcHm_v2.0_Chr4g0416551' => 'rch', 'RcHm_v2.0_Chr5g0065831' => 'rch', 'Rhsim01G0230500' => 'rsi', 'Rhsim05G0194000' => 'rsi', 'Rhsim08G0250400' => 'rsi', 'Sabra02G0131000' => 'sbr', 'Sabra06G0066300' => 'sbr', 'Sabra08G0115500' => 'sbr', 'Sabra09G0023900' => 'sbr', 'Sabra10G0054000' => 'sbr', 'Sabra14G0081500' => 'sbr', 'Sabra16G0147100' => 'sbr', 'SalBow2G2957' => 'sbo', 'SalBow4G3320' => 'sbo', 'SalBow8G1894' => 'sbo', 'Sc07g0007950' => 'sci', 'Sc12g0001360' => 'sci', 'Sc13g0004330' => 'sci', 'Sc20g0005010' => 'sci', 'Sed0000361' => 'sed', 'Sed0001706' => 'sed', 'Sed0002422' => 'sed', 'Sed0004029' => 'sed', 'Sed0004602' => 'sed', 'Sed0004943' => 'sed', 'Sed0008646' => 'sed', 'Sed0023313' => 'sed', 'Sed0024843' => 'sed', 'SEGI_00081' => 'sgi', 'SEGI_00947' => 'sgi', 'SEGI_04046' => 'sgi', 'SEGI_06880' => 'sgi', 'SEGI_09736' => 'sgi', 'SEGI_12741' => 'sgi', 'SEGI_14530' => 'sgi', 'SEGI_20705' => 'sgi', 'SEGI_26088' => 'sgi', 'SEGI_28323' => 'sgi', 'SEGI_33343' => 'sgi', 'SGA_v2.0_scaffold126G33775' => 'sas', 'SGA_v2.0_scaffold2G01337' => 'sas', 'SGA_v2.0_scaffold38G15006' => 'sas', 'SGA_v2.0_scaffold39G15264' => 'sas', 'SGA_v2.0_scaffold453G51880' => 'sas', 'SHI12696' => 'shi', 'SMO367G1096' => 'smo', 'Solyc01g068630.3' => 'sly', 'Solyc05g011880.3' => 'sly', 'Solyc06g076300.3' => 'sly', 'Solyc09g010940.4' => 'sly', 'Solyc09g075890.3' => 'sly', 'Sopen01g030560' => 'spe', 'Sopen05g006630' => 'spe', 'Sopen06g032720' => 'spe', 'Sopen09g005660' => 'spe', 'Sopen09g030690' => 'spe', 'Sp4g14540' => 'spa', 'Sp4g20030' => 'spa', 'Sp5g01320' => 'spa', 'Sp6g21170' => 'spa', 'Sp6g21180' => 'spa', 'Sp6g21190' => 'spa', 'Sp6g40220' => 'spa', 'TAR362G0122' => 'tar', 'TAR362G1338' => 'tar', 'TAR369G0590' => 'tar', 'TAR371G0824' => 'tar', 'TAR622G1429' => 'tar', 'TAR623G0734' => 'tar', 'TAR625G0441' => 'tar', 'TAR629G0976' => 'tar', 'TAR633G1195' => 'tar', 'TAR636G2660' => 'tar', 'THA.LOC104799440' => 'tha', 'THA.LOC104800966' => 'tha', 'THA.LOC104806559' => 'tha', 'THA.LOC104810765' => 'tha', 'THA.LOC104816266' => 'tha', 'THA.LOC104817419' => 'tha', 'THA.LOC104827021' => 'tha', 'Thecc.01G327400' => 'tca', 'Thecc.04G229200' => 'tca', 'Thecc.05G037400' => 'tca', 'Thecc.09G318600' => 'tca', 'Thecc.09G318700' => 'tca', 'Thhalv10006238m.g' => 'esa', 'Thhalv10014321m.g' => 'esa', 'Thhalv10014335m.g' => 'esa', 'Thhalv10015826m.g' => 'esa', 'Thhalv10017107m.g' => 'esa', 'Thhalv10017180m.g' => 'esa', 'Thhalv10029339m.g' => 'esa', 'TPR.G1699' => 'tpr', 'TPR.G23609' => 'tpr', 'TPR.G3081' => 'tpr', 'TPR.G40397' => 'tpr', 'TPR.G5522' => 'tpr', 'TPR.G5618' => 'tpr', 'TPR.G5626' => 'tpr', 'TWI09G1632' => 'twi', 'TWI23G1230' => 'twi', 'TWI53G1064' => 'twi', 'TWI59G0751' => 'twi', 'TWI74G0947' => 'twi', 'TWI77G0337' => 'twi', 'TWI79G1254' => 'twi', 'unitig_0.g2341' => 'ugi', 'unitig_26.g10006' => 'ugi', 'unitig_26.g10008' => 'ugi', 'unitig_26.g9192' => 'ugi', 'vmacro14547' => 'vma', 'vmacro15333' => 'vma', 'vmacro18743' => 'vma', 'vmacro20166' => 'vma', 'VMungo0331G0523' => 'vmu', 'VMungo0331G1202' => 'vmu', 'VMungo0720G1228' => 'vmu', 'VMungo0720G1514' => 'vmu', 'VMungo1080G0169' => 'vmu', 'VMungo1127G1475' => 'vmu', 'VMungo1383G1208' => 'vmu', 'VMungo1383G1698' => 'vmu', 'Zm00001eb012270' => 'zma', 'Zm00001eb054100' => 'zma', 'Zm00001eb063350' => 'zma', 'Zm00001eb328560' => 'zma', 'Zm00001eb342820' => 'zma', 'Zm00001eb362210' => 'zma', 'Zm00001eb397730' => 'zma', 'Zm00001eb399750' => 'zma' ), 'gf_id' => 'HOM05D000959', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000959' ), 'data_identifier' => 'HOM05D000959', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000959', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '622', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p07100' => 'bna', 'A03p11720' => 'bna', 'A05p08300' => 'bna', 'A05p13380' => 'bna', 'A09p54130' => 'bna', 'A10p16690' => 'bna', 'A10p16700' => 'bna', 'A10p33390' => 'bna', 'Aa31LG10G16020' => 'aar', 'Aa31LG1G11810' => 'aar', 'Aa31LG1G11830' => 'aar', 'Aa31LG1G22510' => 'aar', 'Aa31LG5G4890' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5793' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2310' => 'aag', 'Actinidia08499' => 'ach', 'Actinidia11262' => 'ach', 'Actinidia23926' => 'ach', 'Actinidia34420' => 'ach', 'Actinidia36970' => 'ach', 'Ah.02g111220' => 'amhyb', 'Ah.15g097750' => 'amhyb', 'AL4G27500' => 'aly', 'AL6G11470' => 'aly', 'AL8G35950' => 'aly', 'AL8G35960' => 'aly', 'AL8G35970' => 'aly', 'Aqoxy1G00912' => 'aox', 'Aqoxy2G02253' => 'aox', 'Aqoxy2G02411' => 'aox', 'Aqoxy5G00485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BZ66YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K8ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM4FUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6BF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HFV7XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25JBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0YNNV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MAKK6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P70IT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP2Z6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V61LZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YWP64R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3S9AI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7PGHH' => 'arhy', 'AT2G32150' => 'ath', 'AT3G62040' => 'ath', 'AT5G02230' => 'ath', 'AT5G59480' => 'ath', 'AT5G59490' => 'ath', 'ATR0332G060' => 'atr', 'ATR0559G190' => 'atr', 'ATR0693G294' => 'atr', 'Atru.chr3.3975' => 'acertr', 'Atru.chr3.3976' => 'acertr', 'Atru.chr3.3977' => 'acertr', 'Atru.chr4.2498' => 'acertr', 'Atru.chr5.838' => 'acertr', 'Atru.chr8.1990' => 'acertr', 'Atru.chr8.1991' => 'acertr', 'Atru.chr8.1992' => 'acertr', 'AUR62001759' => 'cqu', 'AUR62009545' => 'cqu', 'AUR62010474' => 'cqu', 'AUR62025820' => 'cqu', 'AUR62030422' => 'cqu', 'AUR62033605' => 'cqu', 'AUR62038615' => 'cqu', 'AUR62041347' => 'cqu', 'BcaB01g04574' => 'bca', 'BcaB02g09263' => 'bca', 'BcaB02g10453' => 'bca', 'BcaB05g22513' => 'bca', 'BcaB08g36253' => 'bca', 'BcaB08g36254' => 'bca', 'BcaC01g06519' => 'bca', 'BcaC02g11889' => 'bca', 'BcaC03g14010' => 'bca', 'BcaC03g18439' => 'bca', 'BcaC04g19765' => 'bca', 'BcaC09g48432' => 'bca', 'BcaNung07302' => 'bca', 'BolC2t06040H' => 'bol', 'BolC2t07346H' => 'bol', 'BolC3t13817H' => 'bol', 'BolC4t22625H' => 'bol', 'BolC4t23297H' => 'bol', 'BolC8t51278H' => 'bol', 'BolC9t58050H' => 'bol', 'BolC9t58051H' => 'bol', 'BolC9t60163H' => 'bol', 'BraA02t04712Z' => 'bra', 'BraA02t05791Z' => 'bra', 'BraA03t10483Z' => 'bra', 'BraA05t19795Z' => 'bra', 'BraA05t20276Z' => 'bra', 'BraA09t40827Z' => 'bra', 'BraA10t43750Z' => 'bra', 'BraA10t43751Z' => 'bra', 'BraA10t45370Z' => 'bra', 'C02p00400' => 'bna', 'C02p12460' => 'bna', 'C03p13680' => 'bna', 'C04p10270' => 'bna', 'C04p17500' => 'bna', 'C08p37010' => 'bna', 'C09p51880' => 'bna', 'C09p51890' => 'bna', 'C09p74300' => 'bna', 'CAN.G179.26' => 'can', 'CAN.G3384.1' => 'can', 'CAN.G394.68' => 'can', 'CAN.G907.13' => 'can', 'CANSAT11G0012' => 'cansat', 'CANSAT25G1586' => 'cansat', 'CANSAT35G0735' => 'cansat', 'CANSAT54G0556' => 'cansat', 'CANSAT64G0356' => 'cansat', 'CANSAT78G2042' => 'cansat', 'CARHR125920' => 'chi', 'CARHR131910' => 'chi', 'CARHR172390' => 'chi', 'CARHR211140' => 'chi', 'CARHR285850' => 'chi', 'CARHR285860' => 'chi', 'Carub.0004s1347' => 'cru', 'Carub.0004s1960' => 'cru', 'Carub.0005s2880' => 'cru', 'Carub.0006s0107' => 'cru', 'Carub.0008s2015' => 'cru', 'Carub.0008s2016' => 'cru', 'Carub.0008s2017' => 'cru', 'Ca_01315_v3' => 'car', 'Ca_05063_v3' => 'car', 'Ca_10231_v3' => 'car', 'Ca_10913_v3' => 'car', 'Ca_19156_v3' => 'car', 'Ca_23644_v3' => 'car', 'Ca_26735_v3' => 'car', 'Cc01_g13130' => 'ccan', 'Cc02_g21690' => 'ccan', 'Cc03_g03600' => 'ccan', 'Cc06_g02510' => 'ccan', 'CDE02G1265' => 'cde', 'CDE05G0415' => 'cde', 'CDE08G1082' => 'cde', 'Cfa005780' => 'cfa', 'Cfa011522' => 'cfa', 'Cfa011523' => 'cfa', 'Cfa015627' => 'cfa', 'Cfa017359' => 'cfa', 'Ciclev10005687m.g' => 'ccl', 'Ciclev10012173m.g' => 'ccl', 'Ciclev10021621m.g' => 'ccl', 'Ciclev10028968m.g' => 'ccl', 'Ciclev10029907m.g' => 'ccl', 'CiPaw.01G164800' => 'cil', 'CiPaw.07G083700' => 'cil', 'CiPaw.07G127000' => 'cil', 'CiPaw.07G136900' => 'cil', 'CiPaw.08G081700' => 'cil', 'CiPaw.09G194600' => 'cil', 'CiPaw.10G146500' => 'cil', 'CiPaw.13G091500' => 'cil', 'CiPaw.13G091600' => 'cil', 'ClCG00G003390' => 'cla', 'ClCG01G007220' => 'cla', 'ClCG03G001370' => 'cla', 'ClCG04G008100' => 'cla', 'ClCG06G006110' => 'cla', 'ClCG06G006130' => 'cla', 'ClCG10G021210' => 'cla', 'COL.COLO4_07648' => 'col', 'COL.COLO4_07650' => 'col', 'COL.COLO4_07651' => 'col', 'COL.COLO4_14780' => 'col', 'COL.COLO4_18546' => 'col', 'COL.COLO4_18547' => 'col', 'COL.COLO4_23103' => 'col', 'COL.COLO4_30419' => 'col', 'COL.COLO4_34232' => 'col', 'Cpa.g.sc169.20' => 'cpa', 'Cpa.g.sc57.45' => 'cpa', 'Cpa.g.sc58.124' => 'cpa', 'Cpa.g.sc58.125' => 'cpa', 'Cpa.g.sc81.118' => 'cpa', 'Cpa.g.sc81.119' => 'cpa', 'Cre12.g524700' => 'cre', 'CsaV3_1G034430' => 'csa', 'CsaV3_1G034440' => 'csa', 'CsaV3_1G034450' => 'csa', 'CsaV3_3G034830' => 'csa', 'CsaV3_4G025090' => 'csa', 'CsaV3_5G018660' => 'csa', 'CsaV3_6G038160' => 'csa', 'CSS0003447' => 'camsi', 'CSS0017840' => 'camsi', 'CSS0019260' => 'camsi', 'CSS0040375' => 'camsi', 'CSS0042533' => 'camsi', 'DCAR_005960' => 'dca', 'DCAR_012104' => 'dca', 'DCAR_012105' => 'dca', 'DCAR_012293' => 'dca', 'DCAR_015632' => 'dca', 'DCAR_024602' => 'dca', 'DCAR_028752' => 'dca', 'Dinv06261' => 'din', 'Dinv13982' => 'din', 'Dinv17029' => 'din', 'Dinv18463' => 'din', 'Dinv33181' => 'din', 'Dinv35585' => 'din', 'Dinv37161' => 'din', 'Dinv42977' => 'din', 'Dinv43122' => 'din', 'Dinv44517' => 'din', 'Duzib093G0256' => 'dzi', 'Duzib106G1254' => 'dzi', 'Duzib128G1789' => 'dzi', 'Duzib133G0633' => 'dzi', 'Duzib138G0510' => 'dzi', 'Duzib150G1084' => 'dzi', 'Duzib168G0488' => 'dzi', 'Duzib168G1523' => 'dzi', 'Duzib170G0133' => 'dzi', 'ECA234G1433' => 'eca', 'ECA236G1432' => 'eca', 'ECA236G2256' => 'eca', 'ECA236G2365' => 'eca', 'ECA236G4830' => 'eca', 'ECA248G1505' => 'eca', 'EL10Ac3g06431' => 'bvu', 'EL10Ac5g12577' => 'bvu', 'EL10Ac6g13533' => 'bvu', 'EL10Ac7g16045' => 'bvu', 'Eucgr.A01281' => 'egr', 'Eucgr.B02326' => 'egr', 'Eucgr.H03532' => 'egr', 'Eucgr.K00553' => 'egr', 'Eucgr.K03116' => 'egr', 'FAN02G3963' => 'fan', 'FAN05G0438' => 'fan', 'FAN09G2434' => 'fan', 'FAN12G3984' => 'fan', 'FAN14G0798' => 'fan', 'FAN17G0652' => 'fan', 'FAN19G1988' => 'fan', 'FAN22G0632' => 'fan', 'FAN23G0387' => 'fan', 'FAN26G1323' => 'fan', 'FAN28G0666' => 'fan', 'FvH4_1g26080' => 'fve', 'FvH4_3g36780' => 'fve', 'FvH4_4g15270' => 'fve', 'FvH4_6g13490' => 'fve', 'Glyma.01G098700' => 'gma', 'Glyma.03G065900' => 'gma', 'Glyma.03G073754' => 'gma', 'Glyma.03G073758' => 'gma', 'Glyma.03G083200' => 'gma', 'Glyma.03G225500' => 'gma', 'Glyma.05G037766' => 'gma', 'Glyma.07G133500' => 'gma', 'Glyma.10G139400' => 'gma', 'Glyma.10G248900' => 'gma', 'Glyma.11G137800' => 'gma', 'Glyma.12G061300' => 'gma', 'Glyma.13G337900' => 'gma', 'Glyma.15G036600' => 'gma', 'Glyma.18G182800' => 'gma', 'Glyma.19G222500' => 'gma', 'Glyma.20G144800' => 'gma', 'Gohir.A01G222000' => 'ghi', 'Gohir.A03G044000' => 'ghi', 'Gohir.A03G044100' => 'ghi', 'Gohir.A04G083100' => 'ghi', 'Gohir.A07G127200' => 'ghi', 'Gohir.A07G132400' => 'ghi', 'Gohir.A08G000700' => 'ghi', 'Gohir.A11G327300' => 'ghi', 'Gohir.D01G211500' => 'ghi', 'Gohir.D03G123400' => 'ghi', 'Gohir.D03G123500' => 'ghi', 'Gohir.D04G121800' => 'ghi', 'Gohir.D07G131500' => 'ghi', 'Gohir.D07G136600' => 'ghi', 'Gohir.D08G011600' => 'ghi', 'Gohir.D11G346200' => 'ghi', 'Gorai.001G142800' => 'gra', 'Gorai.001G148700' => 'gra', 'Gorai.002G257300' => 'gra', 'Gorai.003G130000' => 'gra', 'Gorai.003G130100' => 'gra', 'Gorai.004G005300' => 'gra', 'Gorai.007G376500' => 'gra', 'Gorai.012G104700' => 'gra', 'GSVIVG01017946001' => 'vvi', 'GSVIVG01024928001' => 'vvi', 'GSVIVG01028227001' => 'vvi', 'GSVIVG01034151001' => 'vvi', 'HanXRQChr05g0135031' => 'han', 'HanXRQChr05g0135041' => 'han', 'HanXRQChr05g0140021' => 'han', 'HanXRQChr06g0178981' => 'han', 'HanXRQChr07g0188251' => 'han', 'HanXRQChr08g0235311' => 'han', 'HanXRQChr09g0271011' => 'han', 'HanXRQChr10g0293321' => 'han', 'HanXRQChr13g0388171' => 'han', 'Haze_00916' => 'cav', 'Haze_05063' => 'cav', 'Haze_20814' => 'cav', 'Haze_24128' => 'cav', 'Hma1.2p1_0745F.1_g212010' => 'hma', 'Hma1.2p1_0757F.1_g213260' => 'hma', 'Hma1.2p1_0936F.1_g238840' => 'hma', 'Hma1.2p1_1735F.1_g299890' => 'hma', 'Hma1.2p1_1861F.1_g305685' => 'hma', 'HPP92_003397' => 'vpl', 'HPP92_012597' => 'vpl', 'HPP92_015520' => 'vpl', 'HPP92_015539' => 'vpl', 'HPP92_020373' => 'vpl', 'Hund04938' => 'sun', 'Hund10677' => 'sun', 'Hund11033' => 'sun', 'Hund12155' => 'sun', 'Lalb_Chr01g0022551' => 'lal', 'Lalb_Chr03g0042341' => 'lal', 'Lalb_Chr07g0192931' => 'lal', 'Lalb_Chr12g0209551' => 'lal', 'Lalb_Chr19g0125251' => 'lal', 'Lalb_Chr19g0137891' => 'lal', 'Lalb_Chr21g0304641' => 'lal', 'Lalb_Chr21g0309881' => 'lal', 'Lj1A5T12' => 'lonja', 'Lj1C148G10' => 'lonja', 'Lj2A93T83' => 'lonja', 'Lj3A738G68' => 'lonja', 'Lj3C966T1' => 'lonja', 'Lj3g0018958' => 'lja', 'Lj3g0021831' => 'lja', 'Lj3g0025443' => 'lja', 'Lj4g0026809' => 'lja', 'Lj5g0012558' => 'lja', 'Lj5g0021586' => 'lja', 'Lsat_1_v5_gn_5_156840' => 'lsa', 'Lsat_1_v5_gn_8_73460' => 'lsa', 'Lsat_1_v5_gn_8_73481' => 'lsa', 'Lsat_1_v5_gn_9_31601' => 'lsa', 'Lsat_1_v5_gn_9_77320' => 'lsa', 'Manes.01G171300' => 'mes', 'Manes.01G171400' => 'mes', 'Manes.01G236100' => 'mes', 'Manes.02G130500' => 'mes', 'Manes.02G130600' => 'mes', 'Manes.03G180200' => 'mes', 'Manes.05G007000' => 'mes', 'Manes.08G084400' => 'mes', 'Manes.09G092600' => 'mes', 'Manes.15G027900' => 'mes', 'MBI04_g40948_MAGBIO' => 'mbi', 'MBI14_g12123_MAGBIO' => 'mbi', 'MBI18_g28915_MAGBIO' => 'mbi', 'MCO09G053' => 'mco', 'MCO11G782' => 'mco', 'MCO15G215' => 'mco', 'MD03G1088500' => 'mdo', 'MD03G1088600' => 'mdo', 'MD04G1130800' => 'mdo', 'MD09G1291700' => 'mdo', 'MD11G1097500' => 'mdo', 'MD11G1097600' => 'mdo', 'MD12G1143900' => 'mdo', 'MD13G1191400' => 'mdo', 'MD16G1191500' => 'mdo', 'Medtr1g085570' => 'mtr', 'Medtr1g104610' => 'mtr', 'Medtr2g097520' => 'mtr', 'Medtr4g021800' => 'mtr', 'Medtr4g021825' => 'mtr', 'Medtr4g064270' => 'mtr', 'Medtr4g064380' => 'mtr', 'Medtr7g062150' => 'mtr', 'MELO3C003138.2' => 'cme', 'MELO3C005187.2' => 'cme', 'MELO3C009252.2' => 'cme', 'MELO3C014481.2' => 'cme', 'MELO3C020616.2' => 'cme', 'MELO3C020617.2' => 'cme', 'MELO3C020618.2' => 'cme', 'Migut.G00328' => 'egut', 'Migut.J00320' => 'egut', 'Migut.L01000' => 'egut', 'Migut.L01953' => 'egut', 'MSTRG.10253' => 'ama', 'MSTRG.19077' => 'ama', 'MSTRG.26780' => 'ama', 'MSTRG.4023' => 'ama', 'MSTRG.5655' => 'ama', 'MSTRG.9992' => 'ama', 'Nitab4.5_0000043g0310' => 'nta', 'Nitab4.5_0000463g0080' => 'nta', 'Nitab4.5_0000705g0170' => 'nta', 'Nitab4.5_0001326g0060' => 'nta', 'Nitab4.5_0001628g0030' => 'nta', 'Nitab4.5_0002103g0110' => 'nta', 'Nitab4.5_0002946g0030' => 'nta', 'Nitab4.5_0004639g0030' => 'nta', 'Nn2g11149' => 'nnu', 'Nn2g13389' => 'nnu', 'Nn4g25326' => 'nnu', 'Nn4g26290' => 'nnu', 'Nn5g29865' => 'nnu', 'Oeu004163.1' => 'oeu', 'Oeu006901.1' => 'oeu', 'Oeu010096.1' => 'oeu', 'Oeu024340.1' => 'oeu', 'Oeu048369.1' => 'oeu', 'Os01g0973000' => 'osa', 'Os03g0273800' => 'osa', 'Os03g0701200' => 'osa', 'Os03g0834050' => 'osa', 'Os07g0634400' => 'osa', 'Peaxi162Scf00092g01414' => 'pax', 'Peaxi162Scf00165g00818' => 'pax', 'Peaxi162Scf00309g00516' => 'pax', 'Peaxi162Scf00774g00218' => 'pax', 'PGR004G1824' => 'pgr', 'PGR004G2606' => 'pgr', 'PGR031G2716' => 'pgr', 'PGR102G2460' => 'pgr', 'PGR142G2599' => 'pgr', 'PGSC0003DMG400000843' => 'stu', 'PGSC0003DMG400008829' => 'stu', 'PGSC0003DMG400030418' => 'stu', 'PGSC0003DMG400031834' => 'stu', 'PGSC0003DMG401028300' => 'stu', 'PGSC0003DMG402028300' => 'stu', 'Phvul.001G219300' => 'pvu', 'Phvul.007G056000' => 'pvu', 'Phvul.007G208000' => 'pvu', 'Phvul.008G119500' => 'pvu', 'Phvul.010G011200' => 'pvu', 'Phvul.010G014800' => 'pvu', 'Phvul.011G062900' => 'pvu', 'Phvul.L007043' => 'pvu', 'Potri.001G242300' => 'ptr', 'Potri.002G185300' => 'ptr', 'Potri.006G086900' => 'ptr', 'Potri.008G151700' => 'ptr', 'Potri.009G033500' => 'ptr', 'Potri.010G089300' => 'ptr', 'Potri.014G110800' => 'ptr', 'Pp3c27_8130' => 'ppa', 'Pp3c6_27410' => 'ppa', 'PRCOL_00001659' => 'pco', 'PRCOL_00001927' => 'pco', 'PRCOL_00003649' => 'pco', 'Prupe.1G011600' => 'ppe', 'Prupe.3G000800' => 'ppe', 'Prupe.3G001100' => 'ppe', 'Prupe.6G072700' => 'ppe', 'Prupe.6G072800' => 'ppe', 'Prupe.6G257300' => 'ppe', 'Prupe.8G033000' => 'ppe', 'Psat0s2633g0080' => 'psa', 'Psat0s3396g0080' => 'psa', 'Psat0s3396g0200' => 'psa', 'Psat3g139080' => 'psa', 'Psat5g285080' => 'psa', 'Psat6g157760' => 'psa', 'Psat6g208440' => 'psa', 'Psat7g215320' => 'psa', 'Psat7g215400' => 'psa', 'Psat7g235600' => 'psa', 'Psat7g235760' => 'psa', 'PSO063G4603' => 'pso', 'PSO210G0182' => 'pso', 'PSO210G0196' => 'pso', 'PSO339G0394' => 'pso', 'PSO339G4127' => 'pso', 'PSO513G0064' => 'pso', 'PSO761G0079' => 'pso', 'QL01p031003' => 'qlo', 'QL01p031078' => 'qlo', 'QL06p003004' => 'qlo', 'QL07p048731' => 'qlo', 'QL09p037427' => 'qlo', 'RcHm_v2.0_Chr3g0466361' => 'rch', 'RcHm_v2.0_Chr3g0485571' => 'rch', 'RcHm_v2.0_Chr4g0416551' => 'rch', 'RcHm_v2.0_Chr5g0065831' => 'rch', 'Rhsim01G0230500' => 'rsi', 'Rhsim05G0194000' => 'rsi', 'Rhsim08G0250400' => 'rsi', 'Sabra02G0131000' => 'sbr', 'Sabra06G0066300' => 'sbr', 'Sabra08G0115500' => 'sbr', 'Sabra09G0023900' => 'sbr', 'Sabra10G0054000' => 'sbr', 'Sabra14G0081500' => 'sbr', 'Sabra16G0147100' => 'sbr', 'SalBow2G2957' => 'sbo', 'SalBow4G3320' => 'sbo', 'SalBow8G1894' => 'sbo', 'Sc07g0007950' => 'sci', 'Sc12g0001360' => 'sci', 'Sc13g0004330' => 'sci', 'Sc20g0005010' => 'sci', 'Sed0000361' => 'sed', 'Sed0001706' => 'sed', 'Sed0002422' => 'sed', 'Sed0004029' => 'sed', 'Sed0004602' => 'sed', 'Sed0004943' => 'sed', 'Sed0008646' => 'sed', 'Sed0023313' => 'sed', 'Sed0024843' => 'sed', 'SEGI_00081' => 'sgi', 'SEGI_00947' => 'sgi', 'SEGI_04046' => 'sgi', 'SEGI_06880' => 'sgi', 'SEGI_09736' => 'sgi', 'SEGI_12741' => 'sgi', 'SEGI_14530' => 'sgi', 'SEGI_20705' => 'sgi', 'SEGI_26088' => 'sgi', 'SEGI_28323' => 'sgi', 'SEGI_33343' => 'sgi', 'SGA_v2.0_scaffold126G33775' => 'sas', 'SGA_v2.0_scaffold2G01337' => 'sas', 'SGA_v2.0_scaffold38G15006' => 'sas', 'SGA_v2.0_scaffold39G15264' => 'sas', 'SGA_v2.0_scaffold453G51880' => 'sas', 'SHI12696' => 'shi', 'SMO367G1096' => 'smo', 'Solyc01g068630.3' => 'sly', 'Solyc05g011880.3' => 'sly', 'Solyc06g076300.3' => 'sly', 'Solyc09g010940.4' => 'sly', 'Solyc09g075890.3' => 'sly', 'Sopen01g030560' => 'spe', 'Sopen05g006630' => 'spe', 'Sopen06g032720' => 'spe', 'Sopen09g005660' => 'spe', 'Sopen09g030690' => 'spe', 'Sp4g14540' => 'spa', 'Sp4g20030' => 'spa', 'Sp5g01320' => 'spa', 'Sp6g21170' => 'spa', 'Sp6g21180' => 'spa', 'Sp6g21190' => 'spa', 'Sp6g40220' => 'spa', 'TAR362G0122' => 'tar', 'TAR362G1338' => 'tar', 'TAR369G0590' => 'tar', 'TAR371G0824' => 'tar', 'TAR622G1429' => 'tar', 'TAR623G0734' => 'tar', 'TAR625G0441' => 'tar', 'TAR629G0976' => 'tar', 'TAR633G1195' => 'tar', 'TAR636G2660' => 'tar', 'THA.LOC104799440' => 'tha', 'THA.LOC104800966' => 'tha', 'THA.LOC104806559' => 'tha', 'THA.LOC104810765' => 'tha', 'THA.LOC104816266' => 'tha', 'THA.LOC104817419' => 'tha', 'THA.LOC104827021' => 'tha', 'Thecc.01G327400' => 'tca', 'Thecc.04G229200' => 'tca', 'Thecc.05G037400' => 'tca', 'Thecc.09G318600' => 'tca', 'Thecc.09G318700' => 'tca', 'Thhalv10006238m.g' => 'esa', 'Thhalv10014321m.g' => 'esa', 'Thhalv10014335m.g' => 'esa', 'Thhalv10015826m.g' => 'esa', 'Thhalv10017107m.g' => 'esa', 'Thhalv10017180m.g' => 'esa', 'Thhalv10029339m.g' => 'esa', 'TPR.G1699' => 'tpr', 'TPR.G23609' => 'tpr', 'TPR.G3081' => 'tpr', 'TPR.G40397' => 'tpr', 'TPR.G5522' => 'tpr', 'TPR.G5618' => 'tpr', 'TPR.G5626' => 'tpr', 'TWI09G1632' => 'twi', 'TWI23G1230' => 'twi', 'TWI53G1064' => 'twi', 'TWI59G0751' => 'twi', 'TWI74G0947' => 'twi', 'TWI77G0337' => 'twi', 'TWI79G1254' => 'twi', 'unitig_0.g2341' => 'ugi', 'unitig_26.g10006' => 'ugi', 'unitig_26.g10008' => 'ugi', 'unitig_26.g9192' => 'ugi', 'vmacro14547' => 'vma', 'vmacro15333' => 'vma', 'vmacro18743' => 'vma', 'vmacro20166' => 'vma', 'VMungo0331G0523' => 'vmu', 'VMungo0331G1202' => 'vmu', 'VMungo0720G1228' => 'vmu', 'VMungo0720G1514' => 'vmu', 'VMungo1080G0169' => 'vmu', 'VMungo1127G1475' => 'vmu', 'VMungo1383G1208' => 'vmu', 'VMungo1383G1698' => 'vmu', 'Zm00001eb012270' => 'zma', 'Zm00001eb054100' => 'zma', 'Zm00001eb063350' => 'zma', 'Zm00001eb328560' => 'zma', 'Zm00001eb342820' => 'zma', 'Zm00001eb362210' => 'zma', 'Zm00001eb397730' => 'zma', 'Zm00001eb399750' => 'zma' ) $gf_id = 'HOM05D000959' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000959' ) $data_identifier = 'HOM05D000959' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 5, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 5, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 10, 'mbi' => (int) 3, 'mco' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 2, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 3, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 11, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399750' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000959', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '622', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p07100' => 'bna', 'A03p11720' => 'bna', 'A05p08300' => 'bna', 'A05p13380' => 'bna', 'A09p54130' => 'bna', 'A10p16690' => 'bna', 'A10p16700' => 'bna', 'A10p33390' => 'bna', 'Aa31LG10G16020' => 'aar', 'Aa31LG1G11810' => 'aar', 'Aa31LG1G11830' => 'aar', 'Aa31LG1G22510' => 'aar', 'Aa31LG5G4890' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5793' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2310' => 'aag', 'Actinidia08499' => 'ach', 'Actinidia11262' => 'ach', 'Actinidia23926' => 'ach', 'Actinidia34420' => 'ach', 'Actinidia36970' => 'ach', 'Ah.02g111220' => 'amhyb', 'Ah.15g097750' => 'amhyb', 'AL4G27500' => 'aly', 'AL6G11470' => 'aly', 'AL8G35950' => 'aly', 'AL8G35960' => 'aly', 'AL8G35970' => 'aly', 'Aqoxy1G00912' => 'aox', 'Aqoxy2G02253' => 'aox', 'Aqoxy2G02411' => 'aox', 'Aqoxy5G00485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BZ66YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K8ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM4FUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6BF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HFV7XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25JBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0YNNV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MAKK6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P70IT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP2Z6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V61LZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YWP64R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3S9AI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7PGHH' => 'arhy', 'AT2G32150' => 'ath', 'AT3G62040' => 'ath', 'AT5G02230' => 'ath', 'AT5G59480' => 'ath', 'AT5G59490' => 'ath', 'ATR0332G060' => 'atr', 'ATR0559G190' => 'atr', 'ATR0693G294' => 'atr', 'Atru.chr3.3975' => 'acertr', 'Atru.chr3.3976' => 'acertr', 'Atru.chr3.3977' => 'acertr', 'Atru.chr4.2498' => 'acertr', 'Atru.chr5.838' => 'acertr', 'Atru.chr8.1990' => 'acertr', 'Atru.chr8.1991' => 'acertr', 'Atru.chr8.1992' => 'acertr', 'AUR62001759' => 'cqu', 'AUR62009545' => 'cqu', 'AUR62010474' => 'cqu', 'AUR62025820' => 'cqu', 'AUR62030422' => 'cqu', 'AUR62033605' => 'cqu', 'AUR62038615' => 'cqu', 'AUR62041347' => 'cqu', 'BcaB01g04574' => 'bca', 'BcaB02g09263' => 'bca', 'BcaB02g10453' => 'bca', 'BcaB05g22513' => 'bca', 'BcaB08g36253' => 'bca', 'BcaB08g36254' => 'bca', 'BcaC01g06519' => 'bca', 'BcaC02g11889' => 'bca', 'BcaC03g14010' => 'bca', 'BcaC03g18439' => 'bca', 'BcaC04g19765' => 'bca', 'BcaC09g48432' => 'bca', 'BcaNung07302' => 'bca', 'BolC2t06040H' => 'bol', 'BolC2t07346H' => 'bol', 'BolC3t13817H' => 'bol', 'BolC4t22625H' => 'bol', 'BolC4t23297H' => 'bol', 'BolC8t51278H' => 'bol', 'BolC9t58050H' => 'bol', 'BolC9t58051H' => 'bol', 'BolC9t60163H' => 'bol', 'BraA02t04712Z' => 'bra', 'BraA02t05791Z' => 'bra', 'BraA03t10483Z' => 'bra', 'BraA05t19795Z' => 'bra', 'BraA05t20276Z' => 'bra', 'BraA09t40827Z' => 'bra', 'BraA10t43750Z' => 'bra', 'BraA10t43751Z' => 'bra', 'BraA10t45370Z' => 'bra', 'C02p00400' => 'bna', 'C02p12460' => 'bna', 'C03p13680' => 'bna', 'C04p10270' => 'bna', 'C04p17500' => 'bna', 'C08p37010' => 'bna', 'C09p51880' => 'bna', 'C09p51890' => 'bna', 'C09p74300' => 'bna', 'CAN.G179.26' => 'can', 'CAN.G3384.1' => 'can', 'CAN.G394.68' => 'can', 'CAN.G907.13' => 'can', 'CANSAT11G0012' => 'cansat', 'CANSAT25G1586' => 'cansat', 'CANSAT35G0735' => 'cansat', 'CANSAT54G0556' => 'cansat', 'CANSAT64G0356' => 'cansat', 'CANSAT78G2042' => 'cansat', 'CARHR125920' => 'chi', 'CARHR131910' => 'chi', 'CARHR172390' => 'chi', 'CARHR211140' => 'chi', 'CARHR285850' => 'chi', 'CARHR285860' => 'chi', 'Carub.0004s1347' => 'cru', 'Carub.0004s1960' => 'cru', 'Carub.0005s2880' => 'cru', 'Carub.0006s0107' => 'cru', 'Carub.0008s2015' => 'cru', 'Carub.0008s2016' => 'cru', 'Carub.0008s2017' => 'cru', 'Ca_01315_v3' => 'car', 'Ca_05063_v3' => 'car', 'Ca_10231_v3' => 'car', 'Ca_10913_v3' => 'car', 'Ca_19156_v3' => 'car', 'Ca_23644_v3' => 'car', 'Ca_26735_v3' => 'car', 'Cc01_g13130' => 'ccan', 'Cc02_g21690' => 'ccan', 'Cc03_g03600' => 'ccan', 'Cc06_g02510' => 'ccan', 'CDE02G1265' => 'cde', 'CDE05G0415' => 'cde', 'CDE08G1082' => 'cde', 'Cfa005780' => 'cfa', 'Cfa011522' => 'cfa', 'Cfa011523' => 'cfa', 'Cfa015627' => 'cfa', 'Cfa017359' => 'cfa', 'Ciclev10005687m.g' => 'ccl', 'Ciclev10012173m.g' => 'ccl', 'Ciclev10021621m.g' => 'ccl', 'Ciclev10028968m.g' => 'ccl', 'Ciclev10029907m.g' => 'ccl', 'CiPaw.01G164800' => 'cil', 'CiPaw.07G083700' => 'cil', 'CiPaw.07G127000' => 'cil', 'CiPaw.07G136900' => 'cil', 'CiPaw.08G081700' => 'cil', 'CiPaw.09G194600' => 'cil', 'CiPaw.10G146500' => 'cil', 'CiPaw.13G091500' => 'cil', 'CiPaw.13G091600' => 'cil', 'ClCG00G003390' => 'cla', 'ClCG01G007220' => 'cla', 'ClCG03G001370' => 'cla', 'ClCG04G008100' => 'cla', 'ClCG06G006110' => 'cla', 'ClCG06G006130' => 'cla', 'ClCG10G021210' => 'cla', 'COL.COLO4_07648' => 'col', 'COL.COLO4_07650' => 'col', 'COL.COLO4_07651' => 'col', 'COL.COLO4_14780' => 'col', 'COL.COLO4_18546' => 'col', 'COL.COLO4_18547' => 'col', 'COL.COLO4_23103' => 'col', 'COL.COLO4_30419' => 'col', 'COL.COLO4_34232' => 'col', 'Cpa.g.sc169.20' => 'cpa', 'Cpa.g.sc57.45' => 'cpa', 'Cpa.g.sc58.124' => 'cpa', 'Cpa.g.sc58.125' => 'cpa', 'Cpa.g.sc81.118' => 'cpa', 'Cpa.g.sc81.119' => 'cpa', 'Cre12.g524700' => 'cre', 'CsaV3_1G034430' => 'csa', 'CsaV3_1G034440' => 'csa', 'CsaV3_1G034450' => 'csa', 'CsaV3_3G034830' => 'csa', 'CsaV3_4G025090' => 'csa', 'CsaV3_5G018660' => 'csa', 'CsaV3_6G038160' => 'csa', 'CSS0003447' => 'camsi', 'CSS0017840' => 'camsi', 'CSS0019260' => 'camsi', 'CSS0040375' => 'camsi', 'CSS0042533' => 'camsi', 'DCAR_005960' => 'dca', 'DCAR_012104' => 'dca', 'DCAR_012105' => 'dca', 'DCAR_012293' => 'dca', 'DCAR_015632' => 'dca', 'DCAR_024602' => 'dca', 'DCAR_028752' => 'dca', 'Dinv06261' => 'din', 'Dinv13982' => 'din', 'Dinv17029' => 'din', 'Dinv18463' => 'din', 'Dinv33181' => 'din', 'Dinv35585' => 'din', 'Dinv37161' => 'din', 'Dinv42977' => 'din', 'Dinv43122' => 'din', 'Dinv44517' => 'din', 'Duzib093G0256' => 'dzi', 'Duzib106G1254' => 'dzi', 'Duzib128G1789' => 'dzi', 'Duzib133G0633' => 'dzi', 'Duzib138G0510' => 'dzi', 'Duzib150G1084' => 'dzi', 'Duzib168G0488' => 'dzi', 'Duzib168G1523' => 'dzi', 'Duzib170G0133' => 'dzi', 'ECA234G1433' => 'eca', 'ECA236G1432' => 'eca', 'ECA236G2256' => 'eca', 'ECA236G2365' => 'eca', 'ECA236G4830' => 'eca', 'ECA248G1505' => 'eca', 'EL10Ac3g06431' => 'bvu', 'EL10Ac5g12577' => 'bvu', 'EL10Ac6g13533' => 'bvu', 'EL10Ac7g16045' => 'bvu', 'Eucgr.A01281' => 'egr', 'Eucgr.B02326' => 'egr', 'Eucgr.H03532' => 'egr', 'Eucgr.K00553' => 'egr', 'Eucgr.K03116' => 'egr', 'FAN02G3963' => 'fan', 'FAN05G0438' => 'fan', 'FAN09G2434' => 'fan', 'FAN12G3984' => 'fan', 'FAN14G0798' => 'fan', 'FAN17G0652' => 'fan', 'FAN19G1988' => 'fan', 'FAN22G0632' => 'fan', 'FAN23G0387' => 'fan', 'FAN26G1323' => 'fan', 'FAN28G0666' => 'fan', 'FvH4_1g26080' => 'fve', 'FvH4_3g36780' => 'fve', 'FvH4_4g15270' => 'fve', 'FvH4_6g13490' => 'fve', 'Glyma.01G098700' => 'gma', 'Glyma.03G065900' => 'gma', 'Glyma.03G073754' => 'gma', 'Glyma.03G073758' => 'gma', 'Glyma.03G083200' => 'gma', 'Glyma.03G225500' => 'gma', 'Glyma.05G037766' => 'gma', 'Glyma.07G133500' => 'gma', 'Glyma.10G139400' => 'gma', 'Glyma.10G248900' => 'gma', 'Glyma.11G137800' => 'gma', 'Glyma.12G061300' => 'gma', 'Glyma.13G337900' => 'gma', 'Glyma.15G036600' => 'gma', 'Glyma.18G182800' => 'gma', 'Glyma.19G222500' => 'gma', 'Glyma.20G144800' => 'gma', 'Gohir.A01G222000' => 'ghi', 'Gohir.A03G044000' => 'ghi', 'Gohir.A03G044100' => 'ghi', 'Gohir.A04G083100' => 'ghi', 'Gohir.A07G127200' => 'ghi', 'Gohir.A07G132400' => 'ghi', 'Gohir.A08G000700' => 'ghi', 'Gohir.A11G327300' => 'ghi', 'Gohir.D01G211500' => 'ghi', 'Gohir.D03G123400' => 'ghi', 'Gohir.D03G123500' => 'ghi', 'Gohir.D04G121800' => 'ghi', 'Gohir.D07G131500' => 'ghi', 'Gohir.D07G136600' => 'ghi', 'Gohir.D08G011600' => 'ghi', 'Gohir.D11G346200' => 'ghi', 'Gorai.001G142800' => 'gra', 'Gorai.001G148700' => 'gra', 'Gorai.002G257300' => 'gra', 'Gorai.003G130000' => 'gra', 'Gorai.003G130100' => 'gra', 'Gorai.004G005300' => 'gra', 'Gorai.007G376500' => 'gra', 'Gorai.012G104700' => 'gra', 'GSVIVG01017946001' => 'vvi', 'GSVIVG01024928001' => 'vvi', 'GSVIVG01028227001' => 'vvi', 'GSVIVG01034151001' => 'vvi', 'HanXRQChr05g0135031' => 'han', 'HanXRQChr05g0135041' => 'han', 'HanXRQChr05g0140021' => 'han', 'HanXRQChr06g0178981' => 'han', 'HanXRQChr07g0188251' => 'han', 'HanXRQChr08g0235311' => 'han', 'HanXRQChr09g0271011' => 'han', 'HanXRQChr10g0293321' => 'han', 'HanXRQChr13g0388171' => 'han', 'Haze_00916' => 'cav', 'Haze_05063' => 'cav', 'Haze_20814' => 'cav', 'Haze_24128' => 'cav', 'Hma1.2p1_0745F.1_g212010' => 'hma', 'Hma1.2p1_0757F.1_g213260' => 'hma', 'Hma1.2p1_0936F.1_g238840' => 'hma', 'Hma1.2p1_1735F.1_g299890' => 'hma', 'Hma1.2p1_1861F.1_g305685' => 'hma', 'HPP92_003397' => 'vpl', 'HPP92_012597' => 'vpl', 'HPP92_015520' => 'vpl', 'HPP92_015539' => 'vpl', 'HPP92_020373' => 'vpl', 'Hund04938' => 'sun', 'Hund10677' => 'sun', 'Hund11033' => 'sun', 'Hund12155' => 'sun', 'Lalb_Chr01g0022551' => 'lal', 'Lalb_Chr03g0042341' => 'lal', 'Lalb_Chr07g0192931' => 'lal', 'Lalb_Chr12g0209551' => 'lal', 'Lalb_Chr19g0125251' => 'lal', 'Lalb_Chr19g0137891' => 'lal', 'Lalb_Chr21g0304641' => 'lal', 'Lalb_Chr21g0309881' => 'lal', 'Lj1A5T12' => 'lonja', 'Lj1C148G10' => 'lonja', 'Lj2A93T83' => 'lonja', 'Lj3A738G68' => 'lonja', 'Lj3C966T1' => 'lonja', 'Lj3g0018958' => 'lja', 'Lj3g0021831' => 'lja', 'Lj3g0025443' => 'lja', 'Lj4g0026809' => 'lja', 'Lj5g0012558' => 'lja', 'Lj5g0021586' => 'lja', 'Lsat_1_v5_gn_5_156840' => 'lsa', 'Lsat_1_v5_gn_8_73460' => 'lsa', 'Lsat_1_v5_gn_8_73481' => 'lsa', 'Lsat_1_v5_gn_9_31601' => 'lsa', 'Lsat_1_v5_gn_9_77320' => 'lsa', 'Manes.01G171300' => 'mes', 'Manes.01G171400' => 'mes', 'Manes.01G236100' => 'mes', 'Manes.02G130500' => 'mes', 'Manes.02G130600' => 'mes', 'Manes.03G180200' => 'mes', 'Manes.05G007000' => 'mes', 'Manes.08G084400' => 'mes', 'Manes.09G092600' => 'mes', 'Manes.15G027900' => 'mes', 'MBI04_g40948_MAGBIO' => 'mbi', 'MBI14_g12123_MAGBIO' => 'mbi', 'MBI18_g28915_MAGBIO' => 'mbi', 'MCO09G053' => 'mco', 'MCO11G782' => 'mco', 'MCO15G215' => 'mco', 'MD03G1088500' => 'mdo', 'MD03G1088600' => 'mdo', 'MD04G1130800' => 'mdo', 'MD09G1291700' => 'mdo', 'MD11G1097500' => 'mdo', 'MD11G1097600' => 'mdo', 'MD12G1143900' => 'mdo', 'MD13G1191400' => 'mdo', 'MD16G1191500' => 'mdo', 'Medtr1g085570' => 'mtr', 'Medtr1g104610' => 'mtr', 'Medtr2g097520' => 'mtr', 'Medtr4g021800' => 'mtr', 'Medtr4g021825' => 'mtr', 'Medtr4g064270' => 'mtr', 'Medtr4g064380' => 'mtr', 'Medtr7g062150' => 'mtr', 'MELO3C003138.2' => 'cme', 'MELO3C005187.2' => 'cme', 'MELO3C009252.2' => 'cme', 'MELO3C014481.2' => 'cme', 'MELO3C020616.2' => 'cme', 'MELO3C020617.2' => 'cme', 'MELO3C020618.2' => 'cme', 'Migut.G00328' => 'egut', 'Migut.J00320' => 'egut', 'Migut.L01000' => 'egut', 'Migut.L01953' => 'egut', 'MSTRG.10253' => 'ama', 'MSTRG.19077' => 'ama', 'MSTRG.26780' => 'ama', 'MSTRG.4023' => 'ama', 'MSTRG.5655' => 'ama', 'MSTRG.9992' => 'ama', 'Nitab4.5_0000043g0310' => 'nta', 'Nitab4.5_0000463g0080' => 'nta', 'Nitab4.5_0000705g0170' => 'nta', 'Nitab4.5_0001326g0060' => 'nta', 'Nitab4.5_0001628g0030' => 'nta', 'Nitab4.5_0002103g0110' => 'nta', 'Nitab4.5_0002946g0030' => 'nta', 'Nitab4.5_0004639g0030' => 'nta', 'Nn2g11149' => 'nnu', 'Nn2g13389' => 'nnu', 'Nn4g25326' => 'nnu', 'Nn4g26290' => 'nnu', 'Nn5g29865' => 'nnu', 'Oeu004163.1' => 'oeu', 'Oeu006901.1' => 'oeu', 'Oeu010096.1' => 'oeu', 'Oeu024340.1' => 'oeu', 'Oeu048369.1' => 'oeu', 'Os01g0973000' => 'osa', 'Os03g0273800' => 'osa', 'Os03g0701200' => 'osa', 'Os03g0834050' => 'osa', 'Os07g0634400' => 'osa', 'Peaxi162Scf00092g01414' => 'pax', 'Peaxi162Scf00165g00818' => 'pax', 'Peaxi162Scf00309g00516' => 'pax', 'Peaxi162Scf00774g00218' => 'pax', 'PGR004G1824' => 'pgr', 'PGR004G2606' => 'pgr', 'PGR031G2716' => 'pgr', 'PGR102G2460' => 'pgr', 'PGR142G2599' => 'pgr', 'PGSC0003DMG400000843' => 'stu', 'PGSC0003DMG400008829' => 'stu', 'PGSC0003DMG400030418' => 'stu', 'PGSC0003DMG400031834' => 'stu', 'PGSC0003DMG401028300' => 'stu', 'PGSC0003DMG402028300' => 'stu', 'Phvul.001G219300' => 'pvu', 'Phvul.007G056000' => 'pvu', 'Phvul.007G208000' => 'pvu', 'Phvul.008G119500' => 'pvu', 'Phvul.010G011200' => 'pvu', 'Phvul.010G014800' => 'pvu', 'Phvul.011G062900' => 'pvu', 'Phvul.L007043' => 'pvu', 'Potri.001G242300' => 'ptr', 'Potri.002G185300' => 'ptr', 'Potri.006G086900' => 'ptr', 'Potri.008G151700' => 'ptr', 'Potri.009G033500' => 'ptr', 'Potri.010G089300' => 'ptr', 'Potri.014G110800' => 'ptr', 'Pp3c27_8130' => 'ppa', 'Pp3c6_27410' => 'ppa', 'PRCOL_00001659' => 'pco', 'PRCOL_00001927' => 'pco', 'PRCOL_00003649' => 'pco', 'Prupe.1G011600' => 'ppe', 'Prupe.3G000800' => 'ppe', 'Prupe.3G001100' => 'ppe', 'Prupe.6G072700' => 'ppe', 'Prupe.6G072800' => 'ppe', 'Prupe.6G257300' => 'ppe', 'Prupe.8G033000' => 'ppe', 'Psat0s2633g0080' => 'psa', 'Psat0s3396g0080' => 'psa', 'Psat0s3396g0200' => 'psa', 'Psat3g139080' => 'psa', 'Psat5g285080' => 'psa', 'Psat6g157760' => 'psa', 'Psat6g208440' => 'psa', 'Psat7g215320' => 'psa', 'Psat7g215400' => 'psa', 'Psat7g235600' => 'psa', 'Psat7g235760' => 'psa', 'PSO063G4603' => 'pso', 'PSO210G0182' => 'pso', 'PSO210G0196' => 'pso', 'PSO339G0394' => 'pso', 'PSO339G4127' => 'pso', 'PSO513G0064' => 'pso', 'PSO761G0079' => 'pso', 'QL01p031003' => 'qlo', 'QL01p031078' => 'qlo', 'QL06p003004' => 'qlo', 'QL07p048731' => 'qlo', 'QL09p037427' => 'qlo', 'RcHm_v2.0_Chr3g0466361' => 'rch', 'RcHm_v2.0_Chr3g0485571' => 'rch', 'RcHm_v2.0_Chr4g0416551' => 'rch', 'RcHm_v2.0_Chr5g0065831' => 'rch', 'Rhsim01G0230500' => 'rsi', 'Rhsim05G0194000' => 'rsi', 'Rhsim08G0250400' => 'rsi', 'Sabra02G0131000' => 'sbr', 'Sabra06G0066300' => 'sbr', 'Sabra08G0115500' => 'sbr', 'Sabra09G0023900' => 'sbr', 'Sabra10G0054000' => 'sbr', 'Sabra14G0081500' => 'sbr', 'Sabra16G0147100' => 'sbr', 'SalBow2G2957' => 'sbo', 'SalBow4G3320' => 'sbo', 'SalBow8G1894' => 'sbo', 'Sc07g0007950' => 'sci', 'Sc12g0001360' => 'sci', 'Sc13g0004330' => 'sci', 'Sc20g0005010' => 'sci', 'Sed0000361' => 'sed', 'Sed0001706' => 'sed', 'Sed0002422' => 'sed', 'Sed0004029' => 'sed', 'Sed0004602' => 'sed', 'Sed0004943' => 'sed', 'Sed0008646' => 'sed', 'Sed0023313' => 'sed', 'Sed0024843' => 'sed', 'SEGI_00081' => 'sgi', 'SEGI_00947' => 'sgi', 'SEGI_04046' => 'sgi', 'SEGI_06880' => 'sgi', 'SEGI_09736' => 'sgi', 'SEGI_12741' => 'sgi', 'SEGI_14530' => 'sgi', 'SEGI_20705' => 'sgi', 'SEGI_26088' => 'sgi', 'SEGI_28323' => 'sgi', 'SEGI_33343' => 'sgi', 'SGA_v2.0_scaffold126G33775' => 'sas', 'SGA_v2.0_scaffold2G01337' => 'sas', 'SGA_v2.0_scaffold38G15006' => 'sas', 'SGA_v2.0_scaffold39G15264' => 'sas', 'SGA_v2.0_scaffold453G51880' => 'sas', 'SHI12696' => 'shi', 'SMO367G1096' => 'smo', 'Solyc01g068630.3' => 'sly', 'Solyc05g011880.3' => 'sly', 'Solyc06g076300.3' => 'sly', 'Solyc09g010940.4' => 'sly', 'Solyc09g075890.3' => 'sly', 'Sopen01g030560' => 'spe', 'Sopen05g006630' => 'spe', 'Sopen06g032720' => 'spe', 'Sopen09g005660' => 'spe', 'Sopen09g030690' => 'spe', 'Sp4g14540' => 'spa', 'Sp4g20030' => 'spa', 'Sp5g01320' => 'spa', 'Sp6g21170' => 'spa', 'Sp6g21180' => 'spa', 'Sp6g21190' => 'spa', 'Sp6g40220' => 'spa', 'TAR362G0122' => 'tar', 'TAR362G1338' => 'tar', 'TAR369G0590' => 'tar', 'TAR371G0824' => 'tar', 'TAR622G1429' => 'tar', 'TAR623G0734' => 'tar', 'TAR625G0441' => 'tar', 'TAR629G0976' => 'tar', 'TAR633G1195' => 'tar', 'TAR636G2660' => 'tar', 'THA.LOC104799440' => 'tha', 'THA.LOC104800966' => 'tha', 'THA.LOC104806559' => 'tha', 'THA.LOC104810765' => 'tha', 'THA.LOC104816266' => 'tha', 'THA.LOC104817419' => 'tha', 'THA.LOC104827021' => 'tha', 'Thecc.01G327400' => 'tca', 'Thecc.04G229200' => 'tca', 'Thecc.05G037400' => 'tca', 'Thecc.09G318600' => 'tca', 'Thecc.09G318700' => 'tca', 'Thhalv10006238m.g' => 'esa', 'Thhalv10014321m.g' => 'esa', 'Thhalv10014335m.g' => 'esa', 'Thhalv10015826m.g' => 'esa', 'Thhalv10017107m.g' => 'esa', 'Thhalv10017180m.g' => 'esa', 'Thhalv10029339m.g' => 'esa', 'TPR.G1699' => 'tpr', 'TPR.G23609' => 'tpr', 'TPR.G3081' => 'tpr', 'TPR.G40397' => 'tpr', 'TPR.G5522' => 'tpr', 'TPR.G5618' => 'tpr', 'TPR.G5626' => 'tpr', 'TWI09G1632' => 'twi', 'TWI23G1230' => 'twi', 'TWI53G1064' => 'twi', 'TWI59G0751' => 'twi', 'TWI74G0947' => 'twi', 'TWI77G0337' => 'twi', 'TWI79G1254' => 'twi', 'unitig_0.g2341' => 'ugi', 'unitig_26.g10006' => 'ugi', 'unitig_26.g10008' => 'ugi', 'unitig_26.g9192' => 'ugi', 'vmacro14547' => 'vma', 'vmacro15333' => 'vma', 'vmacro18743' => 'vma', 'vmacro20166' => 'vma', 'VMungo0331G0523' => 'vmu', 'VMungo0331G1202' => 'vmu', 'VMungo0720G1228' => 'vmu', 'VMungo0720G1514' => 'vmu', 'VMungo1080G0169' => 'vmu', 'VMungo1127G1475' => 'vmu', 'VMungo1383G1208' => 'vmu', 'VMungo1383G1698' => 'vmu', 'Zm00001eb012270' => 'zma', 'Zm00001eb054100' => 'zma', 'Zm00001eb063350' => 'zma', 'Zm00001eb328560' => 'zma', 'Zm00001eb342820' => 'zma', 'Zm00001eb362210' => 'zma', 'Zm00001eb397730' => 'zma', 'Zm00001eb399750' => 'zma' ), 'gf_id' => 'HOM05D000959', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000959' ), 'data_identifier' => 'HOM05D000959', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000959', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '622', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p07100' => 'bna', 'A03p11720' => 'bna', 'A05p08300' => 'bna', 'A05p13380' => 'bna', 'A09p54130' => 'bna', 'A10p16690' => 'bna', 'A10p16700' => 'bna', 'A10p33390' => 'bna', 'Aa31LG10G16020' => 'aar', 'Aa31LG1G11810' => 'aar', 'Aa31LG1G11830' => 'aar', 'Aa31LG1G22510' => 'aar', 'Aa31LG5G4890' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5793' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2310' => 'aag', 'Actinidia08499' => 'ach', 'Actinidia11262' => 'ach', 'Actinidia23926' => 'ach', 'Actinidia34420' => 'ach', 'Actinidia36970' => 'ach', 'Ah.02g111220' => 'amhyb', 'Ah.15g097750' => 'amhyb', 'AL4G27500' => 'aly', 'AL6G11470' => 'aly', 'AL8G35950' => 'aly', 'AL8G35960' => 'aly', 'AL8G35970' => 'aly', 'Aqoxy1G00912' => 'aox', 'Aqoxy2G02253' => 'aox', 'Aqoxy2G02411' => 'aox', 'Aqoxy5G00485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BZ66YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K8ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM4FUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6BF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HFV7XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25JBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0YNNV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MAKK6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P70IT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP2Z6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V61LZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YWP64R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3S9AI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7PGHH' => 'arhy', 'AT2G32150' => 'ath', 'AT3G62040' => 'ath', 'AT5G02230' => 'ath', 'AT5G59480' => 'ath', 'AT5G59490' => 'ath', 'ATR0332G060' => 'atr', 'ATR0559G190' => 'atr', 'ATR0693G294' => 'atr', 'Atru.chr3.3975' => 'acertr', 'Atru.chr3.3976' => 'acertr', 'Atru.chr3.3977' => 'acertr', 'Atru.chr4.2498' => 'acertr', 'Atru.chr5.838' => 'acertr', 'Atru.chr8.1990' => 'acertr', 'Atru.chr8.1991' => 'acertr', 'Atru.chr8.1992' => 'acertr', 'AUR62001759' => 'cqu', 'AUR62009545' => 'cqu', 'AUR62010474' => 'cqu', 'AUR62025820' => 'cqu', 'AUR62030422' => 'cqu', 'AUR62033605' => 'cqu', 'AUR62038615' => 'cqu', 'AUR62041347' => 'cqu', 'BcaB01g04574' => 'bca', 'BcaB02g09263' => 'bca', 'BcaB02g10453' => 'bca', 'BcaB05g22513' => 'bca', 'BcaB08g36253' => 'bca', 'BcaB08g36254' => 'bca', 'BcaC01g06519' => 'bca', 'BcaC02g11889' => 'bca', 'BcaC03g14010' => 'bca', 'BcaC03g18439' => 'bca', 'BcaC04g19765' => 'bca', 'BcaC09g48432' => 'bca', 'BcaNung07302' => 'bca', 'BolC2t06040H' => 'bol', 'BolC2t07346H' => 'bol', 'BolC3t13817H' => 'bol', 'BolC4t22625H' => 'bol', 'BolC4t23297H' => 'bol', 'BolC8t51278H' => 'bol', 'BolC9t58050H' => 'bol', 'BolC9t58051H' => 'bol', 'BolC9t60163H' => 'bol', 'BraA02t04712Z' => 'bra', 'BraA02t05791Z' => 'bra', 'BraA03t10483Z' => 'bra', 'BraA05t19795Z' => 'bra', 'BraA05t20276Z' => 'bra', 'BraA09t40827Z' => 'bra', 'BraA10t43750Z' => 'bra', 'BraA10t43751Z' => 'bra', 'BraA10t45370Z' => 'bra', 'C02p00400' => 'bna', 'C02p12460' => 'bna', 'C03p13680' => 'bna', 'C04p10270' => 'bna', 'C04p17500' => 'bna', 'C08p37010' => 'bna', 'C09p51880' => 'bna', 'C09p51890' => 'bna', 'C09p74300' => 'bna', 'CAN.G179.26' => 'can', 'CAN.G3384.1' => 'can', 'CAN.G394.68' => 'can', 'CAN.G907.13' => 'can', 'CANSAT11G0012' => 'cansat', 'CANSAT25G1586' => 'cansat', 'CANSAT35G0735' => 'cansat', 'CANSAT54G0556' => 'cansat', 'CANSAT64G0356' => 'cansat', 'CANSAT78G2042' => 'cansat', 'CARHR125920' => 'chi', 'CARHR131910' => 'chi', 'CARHR172390' => 'chi', 'CARHR211140' => 'chi', 'CARHR285850' => 'chi', 'CARHR285860' => 'chi', 'Carub.0004s1347' => 'cru', 'Carub.0004s1960' => 'cru', 'Carub.0005s2880' => 'cru', 'Carub.0006s0107' => 'cru', 'Carub.0008s2015' => 'cru', 'Carub.0008s2016' => 'cru', 'Carub.0008s2017' => 'cru', 'Ca_01315_v3' => 'car', 'Ca_05063_v3' => 'car', 'Ca_10231_v3' => 'car', 'Ca_10913_v3' => 'car', 'Ca_19156_v3' => 'car', 'Ca_23644_v3' => 'car', 'Ca_26735_v3' => 'car', 'Cc01_g13130' => 'ccan', 'Cc02_g21690' => 'ccan', 'Cc03_g03600' => 'ccan', 'Cc06_g02510' => 'ccan', 'CDE02G1265' => 'cde', 'CDE05G0415' => 'cde', 'CDE08G1082' => 'cde', 'Cfa005780' => 'cfa', 'Cfa011522' => 'cfa', 'Cfa011523' => 'cfa', 'Cfa015627' => 'cfa', 'Cfa017359' => 'cfa', 'Ciclev10005687m.g' => 'ccl', 'Ciclev10012173m.g' => 'ccl', 'Ciclev10021621m.g' => 'ccl', 'Ciclev10028968m.g' => 'ccl', 'Ciclev10029907m.g' => 'ccl', 'CiPaw.01G164800' => 'cil', 'CiPaw.07G083700' => 'cil', 'CiPaw.07G127000' => 'cil', 'CiPaw.07G136900' => 'cil', 'CiPaw.08G081700' => 'cil', 'CiPaw.09G194600' => 'cil', 'CiPaw.10G146500' => 'cil', 'CiPaw.13G091500' => 'cil', 'CiPaw.13G091600' => 'cil', 'ClCG00G003390' => 'cla', 'ClCG01G007220' => 'cla', 'ClCG03G001370' => 'cla', 'ClCG04G008100' => 'cla', 'ClCG06G006110' => 'cla', 'ClCG06G006130' => 'cla', 'ClCG10G021210' => 'cla', 'COL.COLO4_07648' => 'col', 'COL.COLO4_07650' => 'col', 'COL.COLO4_07651' => 'col', 'COL.COLO4_14780' => 'col', 'COL.COLO4_18546' => 'col', 'COL.COLO4_18547' => 'col', 'COL.COLO4_23103' => 'col', 'COL.COLO4_30419' => 'col', 'COL.COLO4_34232' => 'col', 'Cpa.g.sc169.20' => 'cpa', 'Cpa.g.sc57.45' => 'cpa', 'Cpa.g.sc58.124' => 'cpa', 'Cpa.g.sc58.125' => 'cpa', 'Cpa.g.sc81.118' => 'cpa', 'Cpa.g.sc81.119' => 'cpa', 'Cre12.g524700' => 'cre', 'CsaV3_1G034430' => 'csa', 'CsaV3_1G034440' => 'csa', 'CsaV3_1G034450' => 'csa', 'CsaV3_3G034830' => 'csa', 'CsaV3_4G025090' => 'csa', 'CsaV3_5G018660' => 'csa', 'CsaV3_6G038160' => 'csa', 'CSS0003447' => 'camsi', 'CSS0017840' => 'camsi', 'CSS0019260' => 'camsi', 'CSS0040375' => 'camsi', 'CSS0042533' => 'camsi', 'DCAR_005960' => 'dca', 'DCAR_012104' => 'dca', 'DCAR_012105' => 'dca', 'DCAR_012293' => 'dca', 'DCAR_015632' => 'dca', 'DCAR_024602' => 'dca', 'DCAR_028752' => 'dca', 'Dinv06261' => 'din', 'Dinv13982' => 'din', 'Dinv17029' => 'din', 'Dinv18463' => 'din', 'Dinv33181' => 'din', 'Dinv35585' => 'din', 'Dinv37161' => 'din', 'Dinv42977' => 'din', 'Dinv43122' => 'din', 'Dinv44517' => 'din', 'Duzib093G0256' => 'dzi', 'Duzib106G1254' => 'dzi', 'Duzib128G1789' => 'dzi', 'Duzib133G0633' => 'dzi', 'Duzib138G0510' => 'dzi', 'Duzib150G1084' => 'dzi', 'Duzib168G0488' => 'dzi', 'Duzib168G1523' => 'dzi', 'Duzib170G0133' => 'dzi', 'ECA234G1433' => 'eca', 'ECA236G1432' => 'eca', 'ECA236G2256' => 'eca', 'ECA236G2365' => 'eca', 'ECA236G4830' => 'eca', 'ECA248G1505' => 'eca', 'EL10Ac3g06431' => 'bvu', 'EL10Ac5g12577' => 'bvu', 'EL10Ac6g13533' => 'bvu', 'EL10Ac7g16045' => 'bvu', 'Eucgr.A01281' => 'egr', 'Eucgr.B02326' => 'egr', 'Eucgr.H03532' => 'egr', 'Eucgr.K00553' => 'egr', 'Eucgr.K03116' => 'egr', 'FAN02G3963' => 'fan', 'FAN05G0438' => 'fan', 'FAN09G2434' => 'fan', 'FAN12G3984' => 'fan', 'FAN14G0798' => 'fan', 'FAN17G0652' => 'fan', 'FAN19G1988' => 'fan', 'FAN22G0632' => 'fan', 'FAN23G0387' => 'fan', 'FAN26G1323' => 'fan', 'FAN28G0666' => 'fan', 'FvH4_1g26080' => 'fve', 'FvH4_3g36780' => 'fve', 'FvH4_4g15270' => 'fve', 'FvH4_6g13490' => 'fve', 'Glyma.01G098700' => 'gma', 'Glyma.03G065900' => 'gma', 'Glyma.03G073754' => 'gma', 'Glyma.03G073758' => 'gma', 'Glyma.03G083200' => 'gma', 'Glyma.03G225500' => 'gma', 'Glyma.05G037766' => 'gma', 'Glyma.07G133500' => 'gma', 'Glyma.10G139400' => 'gma', 'Glyma.10G248900' => 'gma', 'Glyma.11G137800' => 'gma', 'Glyma.12G061300' => 'gma', 'Glyma.13G337900' => 'gma', 'Glyma.15G036600' => 'gma', 'Glyma.18G182800' => 'gma', 'Glyma.19G222500' => 'gma', 'Glyma.20G144800' => 'gma', 'Gohir.A01G222000' => 'ghi', 'Gohir.A03G044000' => 'ghi', 'Gohir.A03G044100' => 'ghi', 'Gohir.A04G083100' => 'ghi', 'Gohir.A07G127200' => 'ghi', 'Gohir.A07G132400' => 'ghi', 'Gohir.A08G000700' => 'ghi', 'Gohir.A11G327300' => 'ghi', 'Gohir.D01G211500' => 'ghi', 'Gohir.D03G123400' => 'ghi', 'Gohir.D03G123500' => 'ghi', 'Gohir.D04G121800' => 'ghi', 'Gohir.D07G131500' => 'ghi', 'Gohir.D07G136600' => 'ghi', 'Gohir.D08G011600' => 'ghi', 'Gohir.D11G346200' => 'ghi', 'Gorai.001G142800' => 'gra', 'Gorai.001G148700' => 'gra', 'Gorai.002G257300' => 'gra', 'Gorai.003G130000' => 'gra', 'Gorai.003G130100' => 'gra', 'Gorai.004G005300' => 'gra', 'Gorai.007G376500' => 'gra', 'Gorai.012G104700' => 'gra', 'GSVIVG01017946001' => 'vvi', 'GSVIVG01024928001' => 'vvi', 'GSVIVG01028227001' => 'vvi', 'GSVIVG01034151001' => 'vvi', 'HanXRQChr05g0135031' => 'han', 'HanXRQChr05g0135041' => 'han', 'HanXRQChr05g0140021' => 'han', 'HanXRQChr06g0178981' => 'han', 'HanXRQChr07g0188251' => 'han', 'HanXRQChr08g0235311' => 'han', 'HanXRQChr09g0271011' => 'han', 'HanXRQChr10g0293321' => 'han', 'HanXRQChr13g0388171' => 'han', 'Haze_00916' => 'cav', 'Haze_05063' => 'cav', 'Haze_20814' => 'cav', 'Haze_24128' => 'cav', 'Hma1.2p1_0745F.1_g212010' => 'hma', 'Hma1.2p1_0757F.1_g213260' => 'hma', 'Hma1.2p1_0936F.1_g238840' => 'hma', 'Hma1.2p1_1735F.1_g299890' => 'hma', 'Hma1.2p1_1861F.1_g305685' => 'hma', 'HPP92_003397' => 'vpl', 'HPP92_012597' => 'vpl', 'HPP92_015520' => 'vpl', 'HPP92_015539' => 'vpl', 'HPP92_020373' => 'vpl', 'Hund04938' => 'sun', 'Hund10677' => 'sun', 'Hund11033' => 'sun', 'Hund12155' => 'sun', 'Lalb_Chr01g0022551' => 'lal', 'Lalb_Chr03g0042341' => 'lal', 'Lalb_Chr07g0192931' => 'lal', 'Lalb_Chr12g0209551' => 'lal', 'Lalb_Chr19g0125251' => 'lal', 'Lalb_Chr19g0137891' => 'lal', 'Lalb_Chr21g0304641' => 'lal', 'Lalb_Chr21g0309881' => 'lal', 'Lj1A5T12' => 'lonja', 'Lj1C148G10' => 'lonja', 'Lj2A93T83' => 'lonja', 'Lj3A738G68' => 'lonja', 'Lj3C966T1' => 'lonja', 'Lj3g0018958' => 'lja', 'Lj3g0021831' => 'lja', 'Lj3g0025443' => 'lja', 'Lj4g0026809' => 'lja', 'Lj5g0012558' => 'lja', 'Lj5g0021586' => 'lja', 'Lsat_1_v5_gn_5_156840' => 'lsa', 'Lsat_1_v5_gn_8_73460' => 'lsa', 'Lsat_1_v5_gn_8_73481' => 'lsa', 'Lsat_1_v5_gn_9_31601' => 'lsa', 'Lsat_1_v5_gn_9_77320' => 'lsa', 'Manes.01G171300' => 'mes', 'Manes.01G171400' => 'mes', 'Manes.01G236100' => 'mes', 'Manes.02G130500' => 'mes', 'Manes.02G130600' => 'mes', 'Manes.03G180200' => 'mes', 'Manes.05G007000' => 'mes', 'Manes.08G084400' => 'mes', 'Manes.09G092600' => 'mes', 'Manes.15G027900' => 'mes', 'MBI04_g40948_MAGBIO' => 'mbi', 'MBI14_g12123_MAGBIO' => 'mbi', 'MBI18_g28915_MAGBIO' => 'mbi', 'MCO09G053' => 'mco', 'MCO11G782' => 'mco', 'MCO15G215' => 'mco', 'MD03G1088500' => 'mdo', 'MD03G1088600' => 'mdo', 'MD04G1130800' => 'mdo', 'MD09G1291700' => 'mdo', 'MD11G1097500' => 'mdo', 'MD11G1097600' => 'mdo', 'MD12G1143900' => 'mdo', 'MD13G1191400' => 'mdo', 'MD16G1191500' => 'mdo', 'Medtr1g085570' => 'mtr', 'Medtr1g104610' => 'mtr', 'Medtr2g097520' => 'mtr', 'Medtr4g021800' => 'mtr', 'Medtr4g021825' => 'mtr', 'Medtr4g064270' => 'mtr', 'Medtr4g064380' => 'mtr', 'Medtr7g062150' => 'mtr', 'MELO3C003138.2' => 'cme', 'MELO3C005187.2' => 'cme', 'MELO3C009252.2' => 'cme', 'MELO3C014481.2' => 'cme', 'MELO3C020616.2' => 'cme', 'MELO3C020617.2' => 'cme', 'MELO3C020618.2' => 'cme', 'Migut.G00328' => 'egut', 'Migut.J00320' => 'egut', 'Migut.L01000' => 'egut', 'Migut.L01953' => 'egut', 'MSTRG.10253' => 'ama', 'MSTRG.19077' => 'ama', 'MSTRG.26780' => 'ama', 'MSTRG.4023' => 'ama', 'MSTRG.5655' => 'ama', 'MSTRG.9992' => 'ama', 'Nitab4.5_0000043g0310' => 'nta', 'Nitab4.5_0000463g0080' => 'nta', 'Nitab4.5_0000705g0170' => 'nta', 'Nitab4.5_0001326g0060' => 'nta', 'Nitab4.5_0001628g0030' => 'nta', 'Nitab4.5_0002103g0110' => 'nta', 'Nitab4.5_0002946g0030' => 'nta', 'Nitab4.5_0004639g0030' => 'nta', 'Nn2g11149' => 'nnu', 'Nn2g13389' => 'nnu', 'Nn4g25326' => 'nnu', 'Nn4g26290' => 'nnu', 'Nn5g29865' => 'nnu', 'Oeu004163.1' => 'oeu', 'Oeu006901.1' => 'oeu', 'Oeu010096.1' => 'oeu', 'Oeu024340.1' => 'oeu', 'Oeu048369.1' => 'oeu', 'Os01g0973000' => 'osa', 'Os03g0273800' => 'osa', 'Os03g0701200' => 'osa', 'Os03g0834050' => 'osa', 'Os07g0634400' => 'osa', 'Peaxi162Scf00092g01414' => 'pax', 'Peaxi162Scf00165g00818' => 'pax', 'Peaxi162Scf00309g00516' => 'pax', 'Peaxi162Scf00774g00218' => 'pax', 'PGR004G1824' => 'pgr', 'PGR004G2606' => 'pgr', 'PGR031G2716' => 'pgr', 'PGR102G2460' => 'pgr', 'PGR142G2599' => 'pgr', 'PGSC0003DMG400000843' => 'stu', 'PGSC0003DMG400008829' => 'stu', 'PGSC0003DMG400030418' => 'stu', 'PGSC0003DMG400031834' => 'stu', 'PGSC0003DMG401028300' => 'stu', 'PGSC0003DMG402028300' => 'stu', 'Phvul.001G219300' => 'pvu', 'Phvul.007G056000' => 'pvu', 'Phvul.007G208000' => 'pvu', 'Phvul.008G119500' => 'pvu', 'Phvul.010G011200' => 'pvu', 'Phvul.010G014800' => 'pvu', 'Phvul.011G062900' => 'pvu', 'Phvul.L007043' => 'pvu', 'Potri.001G242300' => 'ptr', 'Potri.002G185300' => 'ptr', 'Potri.006G086900' => 'ptr', 'Potri.008G151700' => 'ptr', 'Potri.009G033500' => 'ptr', 'Potri.010G089300' => 'ptr', 'Potri.014G110800' => 'ptr', 'Pp3c27_8130' => 'ppa', 'Pp3c6_27410' => 'ppa', 'PRCOL_00001659' => 'pco', 'PRCOL_00001927' => 'pco', 'PRCOL_00003649' => 'pco', 'Prupe.1G011600' => 'ppe', 'Prupe.3G000800' => 'ppe', 'Prupe.3G001100' => 'ppe', 'Prupe.6G072700' => 'ppe', 'Prupe.6G072800' => 'ppe', 'Prupe.6G257300' => 'ppe', 'Prupe.8G033000' => 'ppe', 'Psat0s2633g0080' => 'psa', 'Psat0s3396g0080' => 'psa', 'Psat0s3396g0200' => 'psa', 'Psat3g139080' => 'psa', 'Psat5g285080' => 'psa', 'Psat6g157760' => 'psa', 'Psat6g208440' => 'psa', 'Psat7g215320' => 'psa', 'Psat7g215400' => 'psa', 'Psat7g235600' => 'psa', 'Psat7g235760' => 'psa', 'PSO063G4603' => 'pso', 'PSO210G0182' => 'pso', 'PSO210G0196' => 'pso', 'PSO339G0394' => 'pso', 'PSO339G4127' => 'pso', 'PSO513G0064' => 'pso', 'PSO761G0079' => 'pso', 'QL01p031003' => 'qlo', 'QL01p031078' => 'qlo', 'QL06p003004' => 'qlo', 'QL07p048731' => 'qlo', 'QL09p037427' => 'qlo', 'RcHm_v2.0_Chr3g0466361' => 'rch', 'RcHm_v2.0_Chr3g0485571' => 'rch', 'RcHm_v2.0_Chr4g0416551' => 'rch', 'RcHm_v2.0_Chr5g0065831' => 'rch', 'Rhsim01G0230500' => 'rsi', 'Rhsim05G0194000' => 'rsi', 'Rhsim08G0250400' => 'rsi', 'Sabra02G0131000' => 'sbr', 'Sabra06G0066300' => 'sbr', 'Sabra08G0115500' => 'sbr', 'Sabra09G0023900' => 'sbr', 'Sabra10G0054000' => 'sbr', 'Sabra14G0081500' => 'sbr', 'Sabra16G0147100' => 'sbr', 'SalBow2G2957' => 'sbo', 'SalBow4G3320' => 'sbo', 'SalBow8G1894' => 'sbo', 'Sc07g0007950' => 'sci', 'Sc12g0001360' => 'sci', 'Sc13g0004330' => 'sci', 'Sc20g0005010' => 'sci', 'Sed0000361' => 'sed', 'Sed0001706' => 'sed', 'Sed0002422' => 'sed', 'Sed0004029' => 'sed', 'Sed0004602' => 'sed', 'Sed0004943' => 'sed', 'Sed0008646' => 'sed', 'Sed0023313' => 'sed', 'Sed0024843' => 'sed', 'SEGI_00081' => 'sgi', 'SEGI_00947' => 'sgi', 'SEGI_04046' => 'sgi', 'SEGI_06880' => 'sgi', 'SEGI_09736' => 'sgi', 'SEGI_12741' => 'sgi', 'SEGI_14530' => 'sgi', 'SEGI_20705' => 'sgi', 'SEGI_26088' => 'sgi', 'SEGI_28323' => 'sgi', 'SEGI_33343' => 'sgi', 'SGA_v2.0_scaffold126G33775' => 'sas', 'SGA_v2.0_scaffold2G01337' => 'sas', 'SGA_v2.0_scaffold38G15006' => 'sas', 'SGA_v2.0_scaffold39G15264' => 'sas', 'SGA_v2.0_scaffold453G51880' => 'sas', 'SHI12696' => 'shi', 'SMO367G1096' => 'smo', 'Solyc01g068630.3' => 'sly', 'Solyc05g011880.3' => 'sly', 'Solyc06g076300.3' => 'sly', 'Solyc09g010940.4' => 'sly', 'Solyc09g075890.3' => 'sly', 'Sopen01g030560' => 'spe', 'Sopen05g006630' => 'spe', 'Sopen06g032720' => 'spe', 'Sopen09g005660' => 'spe', 'Sopen09g030690' => 'spe', 'Sp4g14540' => 'spa', 'Sp4g20030' => 'spa', 'Sp5g01320' => 'spa', 'Sp6g21170' => 'spa', 'Sp6g21180' => 'spa', 'Sp6g21190' => 'spa', 'Sp6g40220' => 'spa', 'TAR362G0122' => 'tar', 'TAR362G1338' => 'tar', 'TAR369G0590' => 'tar', 'TAR371G0824' => 'tar', 'TAR622G1429' => 'tar', 'TAR623G0734' => 'tar', 'TAR625G0441' => 'tar', 'TAR629G0976' => 'tar', 'TAR633G1195' => 'tar', 'TAR636G2660' => 'tar', 'THA.LOC104799440' => 'tha', 'THA.LOC104800966' => 'tha', 'THA.LOC104806559' => 'tha', 'THA.LOC104810765' => 'tha', 'THA.LOC104816266' => 'tha', 'THA.LOC104817419' => 'tha', 'THA.LOC104827021' => 'tha', 'Thecc.01G327400' => 'tca', 'Thecc.04G229200' => 'tca', 'Thecc.05G037400' => 'tca', 'Thecc.09G318600' => 'tca', 'Thecc.09G318700' => 'tca', 'Thhalv10006238m.g' => 'esa', 'Thhalv10014321m.g' => 'esa', 'Thhalv10014335m.g' => 'esa', 'Thhalv10015826m.g' => 'esa', 'Thhalv10017107m.g' => 'esa', 'Thhalv10017180m.g' => 'esa', 'Thhalv10029339m.g' => 'esa', 'TPR.G1699' => 'tpr', 'TPR.G23609' => 'tpr', 'TPR.G3081' => 'tpr', 'TPR.G40397' => 'tpr', 'TPR.G5522' => 'tpr', 'TPR.G5618' => 'tpr', 'TPR.G5626' => 'tpr', 'TWI09G1632' => 'twi', 'TWI23G1230' => 'twi', 'TWI53G1064' => 'twi', 'TWI59G0751' => 'twi', 'TWI74G0947' => 'twi', 'TWI77G0337' => 'twi', 'TWI79G1254' => 'twi', 'unitig_0.g2341' => 'ugi', 'unitig_26.g10006' => 'ugi', 'unitig_26.g10008' => 'ugi', 'unitig_26.g9192' => 'ugi', 'vmacro14547' => 'vma', 'vmacro15333' => 'vma', 'vmacro18743' => 'vma', 'vmacro20166' => 'vma', 'VMungo0331G0523' => 'vmu', 'VMungo0331G1202' => 'vmu', 'VMungo0720G1228' => 'vmu', 'VMungo0720G1514' => 'vmu', 'VMungo1080G0169' => 'vmu', 'VMungo1127G1475' => 'vmu', 'VMungo1383G1208' => 'vmu', 'VMungo1383G1698' => 'vmu', 'Zm00001eb012270' => 'zma', 'Zm00001eb054100' => 'zma', 'Zm00001eb063350' => 'zma', 'Zm00001eb328560' => 'zma', 'Zm00001eb342820' => 'zma', 'Zm00001eb362210' => 'zma', 'Zm00001eb397730' => 'zma', 'Zm00001eb399750' => 'zma' ) $gf_id = 'HOM05D000959' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000959' ) $data_identifier = 'HOM05D000959' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 5, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 5, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 10, 'mbi' => (int) 3, 'mco' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 2, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 3, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 11, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399750' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000959', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '622', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p07100' => 'bna', 'A03p11720' => 'bna', 'A05p08300' => 'bna', 'A05p13380' => 'bna', 'A09p54130' => 'bna', 'A10p16690' => 'bna', 'A10p16700' => 'bna', 'A10p33390' => 'bna', 'Aa31LG10G16020' => 'aar', 'Aa31LG1G11810' => 'aar', 'Aa31LG1G11830' => 'aar', 'Aa31LG1G22510' => 'aar', 'Aa31LG5G4890' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5793' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2310' => 'aag', 'Actinidia08499' => 'ach', 'Actinidia11262' => 'ach', 'Actinidia23926' => 'ach', 'Actinidia34420' => 'ach', 'Actinidia36970' => 'ach', 'Ah.02g111220' => 'amhyb', 'Ah.15g097750' => 'amhyb', 'AL4G27500' => 'aly', 'AL6G11470' => 'aly', 'AL8G35950' => 'aly', 'AL8G35960' => 'aly', 'AL8G35970' => 'aly', 'Aqoxy1G00912' => 'aox', 'Aqoxy2G02253' => 'aox', 'Aqoxy2G02411' => 'aox', 'Aqoxy5G00485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BZ66YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K8ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM4FUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6BF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HFV7XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25JBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0YNNV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MAKK6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P70IT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP2Z6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V61LZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YWP64R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3S9AI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7PGHH' => 'arhy', 'AT2G32150' => 'ath', 'AT3G62040' => 'ath', 'AT5G02230' => 'ath', 'AT5G59480' => 'ath', 'AT5G59490' => 'ath', 'ATR0332G060' => 'atr', 'ATR0559G190' => 'atr', 'ATR0693G294' => 'atr', 'Atru.chr3.3975' => 'acertr', 'Atru.chr3.3976' => 'acertr', 'Atru.chr3.3977' => 'acertr', 'Atru.chr4.2498' => 'acertr', 'Atru.chr5.838' => 'acertr', 'Atru.chr8.1990' => 'acertr', 'Atru.chr8.1991' => 'acertr', 'Atru.chr8.1992' => 'acertr', 'AUR62001759' => 'cqu', 'AUR62009545' => 'cqu', 'AUR62010474' => 'cqu', 'AUR62025820' => 'cqu', 'AUR62030422' => 'cqu', 'AUR62033605' => 'cqu', 'AUR62038615' => 'cqu', 'AUR62041347' => 'cqu', 'BcaB01g04574' => 'bca', 'BcaB02g09263' => 'bca', 'BcaB02g10453' => 'bca', 'BcaB05g22513' => 'bca', 'BcaB08g36253' => 'bca', 'BcaB08g36254' => 'bca', 'BcaC01g06519' => 'bca', 'BcaC02g11889' => 'bca', 'BcaC03g14010' => 'bca', 'BcaC03g18439' => 'bca', 'BcaC04g19765' => 'bca', 'BcaC09g48432' => 'bca', 'BcaNung07302' => 'bca', 'BolC2t06040H' => 'bol', 'BolC2t07346H' => 'bol', 'BolC3t13817H' => 'bol', 'BolC4t22625H' => 'bol', 'BolC4t23297H' => 'bol', 'BolC8t51278H' => 'bol', 'BolC9t58050H' => 'bol', 'BolC9t58051H' => 'bol', 'BolC9t60163H' => 'bol', 'BraA02t04712Z' => 'bra', 'BraA02t05791Z' => 'bra', 'BraA03t10483Z' => 'bra', 'BraA05t19795Z' => 'bra', 'BraA05t20276Z' => 'bra', 'BraA09t40827Z' => 'bra', 'BraA10t43750Z' => 'bra', 'BraA10t43751Z' => 'bra', 'BraA10t45370Z' => 'bra', 'C02p00400' => 'bna', 'C02p12460' => 'bna', 'C03p13680' => 'bna', 'C04p10270' => 'bna', 'C04p17500' => 'bna', 'C08p37010' => 'bna', 'C09p51880' => 'bna', 'C09p51890' => 'bna', 'C09p74300' => 'bna', 'CAN.G179.26' => 'can', 'CAN.G3384.1' => 'can', 'CAN.G394.68' => 'can', 'CAN.G907.13' => 'can', 'CANSAT11G0012' => 'cansat', 'CANSAT25G1586' => 'cansat', 'CANSAT35G0735' => 'cansat', 'CANSAT54G0556' => 'cansat', 'CANSAT64G0356' => 'cansat', 'CANSAT78G2042' => 'cansat', 'CARHR125920' => 'chi', 'CARHR131910' => 'chi', 'CARHR172390' => 'chi', 'CARHR211140' => 'chi', 'CARHR285850' => 'chi', 'CARHR285860' => 'chi', 'Carub.0004s1347' => 'cru', 'Carub.0004s1960' => 'cru', 'Carub.0005s2880' => 'cru', 'Carub.0006s0107' => 'cru', 'Carub.0008s2015' => 'cru', 'Carub.0008s2016' => 'cru', 'Carub.0008s2017' => 'cru', 'Ca_01315_v3' => 'car', 'Ca_05063_v3' => 'car', 'Ca_10231_v3' => 'car', 'Ca_10913_v3' => 'car', 'Ca_19156_v3' => 'car', 'Ca_23644_v3' => 'car', 'Ca_26735_v3' => 'car', 'Cc01_g13130' => 'ccan', 'Cc02_g21690' => 'ccan', 'Cc03_g03600' => 'ccan', 'Cc06_g02510' => 'ccan', 'CDE02G1265' => 'cde', 'CDE05G0415' => 'cde', 'CDE08G1082' => 'cde', 'Cfa005780' => 'cfa', 'Cfa011522' => 'cfa', 'Cfa011523' => 'cfa', 'Cfa015627' => 'cfa', 'Cfa017359' => 'cfa', 'Ciclev10005687m.g' => 'ccl', 'Ciclev10012173m.g' => 'ccl', 'Ciclev10021621m.g' => 'ccl', 'Ciclev10028968m.g' => 'ccl', 'Ciclev10029907m.g' => 'ccl', 'CiPaw.01G164800' => 'cil', 'CiPaw.07G083700' => 'cil', 'CiPaw.07G127000' => 'cil', 'CiPaw.07G136900' => 'cil', 'CiPaw.08G081700' => 'cil', 'CiPaw.09G194600' => 'cil', 'CiPaw.10G146500' => 'cil', 'CiPaw.13G091500' => 'cil', 'CiPaw.13G091600' => 'cil', 'ClCG00G003390' => 'cla', 'ClCG01G007220' => 'cla', 'ClCG03G001370' => 'cla', 'ClCG04G008100' => 'cla', 'ClCG06G006110' => 'cla', 'ClCG06G006130' => 'cla', 'ClCG10G021210' => 'cla', 'COL.COLO4_07648' => 'col', 'COL.COLO4_07650' => 'col', 'COL.COLO4_07651' => 'col', 'COL.COLO4_14780' => 'col', 'COL.COLO4_18546' => 'col', 'COL.COLO4_18547' => 'col', 'COL.COLO4_23103' => 'col', 'COL.COLO4_30419' => 'col', 'COL.COLO4_34232' => 'col', 'Cpa.g.sc169.20' => 'cpa', 'Cpa.g.sc57.45' => 'cpa', 'Cpa.g.sc58.124' => 'cpa', 'Cpa.g.sc58.125' => 'cpa', 'Cpa.g.sc81.118' => 'cpa', 'Cpa.g.sc81.119' => 'cpa', 'Cre12.g524700' => 'cre', 'CsaV3_1G034430' => 'csa', 'CsaV3_1G034440' => 'csa', 'CsaV3_1G034450' => 'csa', 'CsaV3_3G034830' => 'csa', 'CsaV3_4G025090' => 'csa', 'CsaV3_5G018660' => 'csa', 'CsaV3_6G038160' => 'csa', 'CSS0003447' => 'camsi', 'CSS0017840' => 'camsi', 'CSS0019260' => 'camsi', 'CSS0040375' => 'camsi', 'CSS0042533' => 'camsi', 'DCAR_005960' => 'dca', 'DCAR_012104' => 'dca', 'DCAR_012105' => 'dca', 'DCAR_012293' => 'dca', 'DCAR_015632' => 'dca', 'DCAR_024602' => 'dca', 'DCAR_028752' => 'dca', 'Dinv06261' => 'din', 'Dinv13982' => 'din', 'Dinv17029' => 'din', 'Dinv18463' => 'din', 'Dinv33181' => 'din', 'Dinv35585' => 'din', 'Dinv37161' => 'din', 'Dinv42977' => 'din', 'Dinv43122' => 'din', 'Dinv44517' => 'din', 'Duzib093G0256' => 'dzi', 'Duzib106G1254' => 'dzi', 'Duzib128G1789' => 'dzi', 'Duzib133G0633' => 'dzi', 'Duzib138G0510' => 'dzi', 'Duzib150G1084' => 'dzi', 'Duzib168G0488' => 'dzi', 'Duzib168G1523' => 'dzi', 'Duzib170G0133' => 'dzi', 'ECA234G1433' => 'eca', 'ECA236G1432' => 'eca', 'ECA236G2256' => 'eca', 'ECA236G2365' => 'eca', 'ECA236G4830' => 'eca', 'ECA248G1505' => 'eca', 'EL10Ac3g06431' => 'bvu', 'EL10Ac5g12577' => 'bvu', 'EL10Ac6g13533' => 'bvu', 'EL10Ac7g16045' => 'bvu', 'Eucgr.A01281' => 'egr', 'Eucgr.B02326' => 'egr', 'Eucgr.H03532' => 'egr', 'Eucgr.K00553' => 'egr', 'Eucgr.K03116' => 'egr', 'FAN02G3963' => 'fan', 'FAN05G0438' => 'fan', 'FAN09G2434' => 'fan', 'FAN12G3984' => 'fan', 'FAN14G0798' => 'fan', 'FAN17G0652' => 'fan', 'FAN19G1988' => 'fan', 'FAN22G0632' => 'fan', 'FAN23G0387' => 'fan', 'FAN26G1323' => 'fan', 'FAN28G0666' => 'fan', 'FvH4_1g26080' => 'fve', 'FvH4_3g36780' => 'fve', 'FvH4_4g15270' => 'fve', 'FvH4_6g13490' => 'fve', 'Glyma.01G098700' => 'gma', 'Glyma.03G065900' => 'gma', 'Glyma.03G073754' => 'gma', 'Glyma.03G073758' => 'gma', 'Glyma.03G083200' => 'gma', 'Glyma.03G225500' => 'gma', 'Glyma.05G037766' => 'gma', 'Glyma.07G133500' => 'gma', 'Glyma.10G139400' => 'gma', 'Glyma.10G248900' => 'gma', 'Glyma.11G137800' => 'gma', 'Glyma.12G061300' => 'gma', 'Glyma.13G337900' => 'gma', 'Glyma.15G036600' => 'gma', 'Glyma.18G182800' => 'gma', 'Glyma.19G222500' => 'gma', 'Glyma.20G144800' => 'gma', 'Gohir.A01G222000' => 'ghi', 'Gohir.A03G044000' => 'ghi', 'Gohir.A03G044100' => 'ghi', 'Gohir.A04G083100' => 'ghi', 'Gohir.A07G127200' => 'ghi', 'Gohir.A07G132400' => 'ghi', 'Gohir.A08G000700' => 'ghi', 'Gohir.A11G327300' => 'ghi', 'Gohir.D01G211500' => 'ghi', 'Gohir.D03G123400' => 'ghi', 'Gohir.D03G123500' => 'ghi', 'Gohir.D04G121800' => 'ghi', 'Gohir.D07G131500' => 'ghi', 'Gohir.D07G136600' => 'ghi', 'Gohir.D08G011600' => 'ghi', 'Gohir.D11G346200' => 'ghi', 'Gorai.001G142800' => 'gra', 'Gorai.001G148700' => 'gra', 'Gorai.002G257300' => 'gra', 'Gorai.003G130000' => 'gra', 'Gorai.003G130100' => 'gra', 'Gorai.004G005300' => 'gra', 'Gorai.007G376500' => 'gra', 'Gorai.012G104700' => 'gra', 'GSVIVG01017946001' => 'vvi', 'GSVIVG01024928001' => 'vvi', 'GSVIVG01028227001' => 'vvi', 'GSVIVG01034151001' => 'vvi', 'HanXRQChr05g0135031' => 'han', 'HanXRQChr05g0135041' => 'han', 'HanXRQChr05g0140021' => 'han', 'HanXRQChr06g0178981' => 'han', 'HanXRQChr07g0188251' => 'han', 'HanXRQChr08g0235311' => 'han', 'HanXRQChr09g0271011' => 'han', 'HanXRQChr10g0293321' => 'han', 'HanXRQChr13g0388171' => 'han', 'Haze_00916' => 'cav', 'Haze_05063' => 'cav', 'Haze_20814' => 'cav', 'Haze_24128' => 'cav', 'Hma1.2p1_0745F.1_g212010' => 'hma', 'Hma1.2p1_0757F.1_g213260' => 'hma', 'Hma1.2p1_0936F.1_g238840' => 'hma', 'Hma1.2p1_1735F.1_g299890' => 'hma', 'Hma1.2p1_1861F.1_g305685' => 'hma', 'HPP92_003397' => 'vpl', 'HPP92_012597' => 'vpl', 'HPP92_015520' => 'vpl', 'HPP92_015539' => 'vpl', 'HPP92_020373' => 'vpl', 'Hund04938' => 'sun', 'Hund10677' => 'sun', 'Hund11033' => 'sun', 'Hund12155' => 'sun', 'Lalb_Chr01g0022551' => 'lal', 'Lalb_Chr03g0042341' => 'lal', 'Lalb_Chr07g0192931' => 'lal', 'Lalb_Chr12g0209551' => 'lal', 'Lalb_Chr19g0125251' => 'lal', 'Lalb_Chr19g0137891' => 'lal', 'Lalb_Chr21g0304641' => 'lal', 'Lalb_Chr21g0309881' => 'lal', 'Lj1A5T12' => 'lonja', 'Lj1C148G10' => 'lonja', 'Lj2A93T83' => 'lonja', 'Lj3A738G68' => 'lonja', 'Lj3C966T1' => 'lonja', 'Lj3g0018958' => 'lja', 'Lj3g0021831' => 'lja', 'Lj3g0025443' => 'lja', 'Lj4g0026809' => 'lja', 'Lj5g0012558' => 'lja', 'Lj5g0021586' => 'lja', 'Lsat_1_v5_gn_5_156840' => 'lsa', 'Lsat_1_v5_gn_8_73460' => 'lsa', 'Lsat_1_v5_gn_8_73481' => 'lsa', 'Lsat_1_v5_gn_9_31601' => 'lsa', 'Lsat_1_v5_gn_9_77320' => 'lsa', 'Manes.01G171300' => 'mes', 'Manes.01G171400' => 'mes', 'Manes.01G236100' => 'mes', 'Manes.02G130500' => 'mes', 'Manes.02G130600' => 'mes', 'Manes.03G180200' => 'mes', 'Manes.05G007000' => 'mes', 'Manes.08G084400' => 'mes', 'Manes.09G092600' => 'mes', 'Manes.15G027900' => 'mes', 'MBI04_g40948_MAGBIO' => 'mbi', 'MBI14_g12123_MAGBIO' => 'mbi', 'MBI18_g28915_MAGBIO' => 'mbi', 'MCO09G053' => 'mco', 'MCO11G782' => 'mco', 'MCO15G215' => 'mco', 'MD03G1088500' => 'mdo', 'MD03G1088600' => 'mdo', 'MD04G1130800' => 'mdo', 'MD09G1291700' => 'mdo', 'MD11G1097500' => 'mdo', 'MD11G1097600' => 'mdo', 'MD12G1143900' => 'mdo', 'MD13G1191400' => 'mdo', 'MD16G1191500' => 'mdo', 'Medtr1g085570' => 'mtr', 'Medtr1g104610' => 'mtr', 'Medtr2g097520' => 'mtr', 'Medtr4g021800' => 'mtr', 'Medtr4g021825' => 'mtr', 'Medtr4g064270' => 'mtr', 'Medtr4g064380' => 'mtr', 'Medtr7g062150' => 'mtr', 'MELO3C003138.2' => 'cme', 'MELO3C005187.2' => 'cme', 'MELO3C009252.2' => 'cme', 'MELO3C014481.2' => 'cme', 'MELO3C020616.2' => 'cme', 'MELO3C020617.2' => 'cme', 'MELO3C020618.2' => 'cme', 'Migut.G00328' => 'egut', 'Migut.J00320' => 'egut', 'Migut.L01000' => 'egut', 'Migut.L01953' => 'egut', 'MSTRG.10253' => 'ama', 'MSTRG.19077' => 'ama', 'MSTRG.26780' => 'ama', 'MSTRG.4023' => 'ama', 'MSTRG.5655' => 'ama', 'MSTRG.9992' => 'ama', 'Nitab4.5_0000043g0310' => 'nta', 'Nitab4.5_0000463g0080' => 'nta', 'Nitab4.5_0000705g0170' => 'nta', 'Nitab4.5_0001326g0060' => 'nta', 'Nitab4.5_0001628g0030' => 'nta', 'Nitab4.5_0002103g0110' => 'nta', 'Nitab4.5_0002946g0030' => 'nta', 'Nitab4.5_0004639g0030' => 'nta', 'Nn2g11149' => 'nnu', 'Nn2g13389' => 'nnu', 'Nn4g25326' => 'nnu', 'Nn4g26290' => 'nnu', 'Nn5g29865' => 'nnu', 'Oeu004163.1' => 'oeu', 'Oeu006901.1' => 'oeu', 'Oeu010096.1' => 'oeu', 'Oeu024340.1' => 'oeu', 'Oeu048369.1' => 'oeu', 'Os01g0973000' => 'osa', 'Os03g0273800' => 'osa', 'Os03g0701200' => 'osa', 'Os03g0834050' => 'osa', 'Os07g0634400' => 'osa', 'Peaxi162Scf00092g01414' => 'pax', 'Peaxi162Scf00165g00818' => 'pax', 'Peaxi162Scf00309g00516' => 'pax', 'Peaxi162Scf00774g00218' => 'pax', 'PGR004G1824' => 'pgr', 'PGR004G2606' => 'pgr', 'PGR031G2716' => 'pgr', 'PGR102G2460' => 'pgr', 'PGR142G2599' => 'pgr', 'PGSC0003DMG400000843' => 'stu', 'PGSC0003DMG400008829' => 'stu', 'PGSC0003DMG400030418' => 'stu', 'PGSC0003DMG400031834' => 'stu', 'PGSC0003DMG401028300' => 'stu', 'PGSC0003DMG402028300' => 'stu', 'Phvul.001G219300' => 'pvu', 'Phvul.007G056000' => 'pvu', 'Phvul.007G208000' => 'pvu', 'Phvul.008G119500' => 'pvu', 'Phvul.010G011200' => 'pvu', 'Phvul.010G014800' => 'pvu', 'Phvul.011G062900' => 'pvu', 'Phvul.L007043' => 'pvu', 'Potri.001G242300' => 'ptr', 'Potri.002G185300' => 'ptr', 'Potri.006G086900' => 'ptr', 'Potri.008G151700' => 'ptr', 'Potri.009G033500' => 'ptr', 'Potri.010G089300' => 'ptr', 'Potri.014G110800' => 'ptr', 'Pp3c27_8130' => 'ppa', 'Pp3c6_27410' => 'ppa', 'PRCOL_00001659' => 'pco', 'PRCOL_00001927' => 'pco', 'PRCOL_00003649' => 'pco', 'Prupe.1G011600' => 'ppe', 'Prupe.3G000800' => 'ppe', 'Prupe.3G001100' => 'ppe', 'Prupe.6G072700' => 'ppe', 'Prupe.6G072800' => 'ppe', 'Prupe.6G257300' => 'ppe', 'Prupe.8G033000' => 'ppe', 'Psat0s2633g0080' => 'psa', 'Psat0s3396g0080' => 'psa', 'Psat0s3396g0200' => 'psa', 'Psat3g139080' => 'psa', 'Psat5g285080' => 'psa', 'Psat6g157760' => 'psa', 'Psat6g208440' => 'psa', 'Psat7g215320' => 'psa', 'Psat7g215400' => 'psa', 'Psat7g235600' => 'psa', 'Psat7g235760' => 'psa', 'PSO063G4603' => 'pso', 'PSO210G0182' => 'pso', 'PSO210G0196' => 'pso', 'PSO339G0394' => 'pso', 'PSO339G4127' => 'pso', 'PSO513G0064' => 'pso', 'PSO761G0079' => 'pso', 'QL01p031003' => 'qlo', 'QL01p031078' => 'qlo', 'QL06p003004' => 'qlo', 'QL07p048731' => 'qlo', 'QL09p037427' => 'qlo', 'RcHm_v2.0_Chr3g0466361' => 'rch', 'RcHm_v2.0_Chr3g0485571' => 'rch', 'RcHm_v2.0_Chr4g0416551' => 'rch', 'RcHm_v2.0_Chr5g0065831' => 'rch', 'Rhsim01G0230500' => 'rsi', 'Rhsim05G0194000' => 'rsi', 'Rhsim08G0250400' => 'rsi', 'Sabra02G0131000' => 'sbr', 'Sabra06G0066300' => 'sbr', 'Sabra08G0115500' => 'sbr', 'Sabra09G0023900' => 'sbr', 'Sabra10G0054000' => 'sbr', 'Sabra14G0081500' => 'sbr', 'Sabra16G0147100' => 'sbr', 'SalBow2G2957' => 'sbo', 'SalBow4G3320' => 'sbo', 'SalBow8G1894' => 'sbo', 'Sc07g0007950' => 'sci', 'Sc12g0001360' => 'sci', 'Sc13g0004330' => 'sci', 'Sc20g0005010' => 'sci', 'Sed0000361' => 'sed', 'Sed0001706' => 'sed', 'Sed0002422' => 'sed', 'Sed0004029' => 'sed', 'Sed0004602' => 'sed', 'Sed0004943' => 'sed', 'Sed0008646' => 'sed', 'Sed0023313' => 'sed', 'Sed0024843' => 'sed', 'SEGI_00081' => 'sgi', 'SEGI_00947' => 'sgi', 'SEGI_04046' => 'sgi', 'SEGI_06880' => 'sgi', 'SEGI_09736' => 'sgi', 'SEGI_12741' => 'sgi', 'SEGI_14530' => 'sgi', 'SEGI_20705' => 'sgi', 'SEGI_26088' => 'sgi', 'SEGI_28323' => 'sgi', 'SEGI_33343' => 'sgi', 'SGA_v2.0_scaffold126G33775' => 'sas', 'SGA_v2.0_scaffold2G01337' => 'sas', 'SGA_v2.0_scaffold38G15006' => 'sas', 'SGA_v2.0_scaffold39G15264' => 'sas', 'SGA_v2.0_scaffold453G51880' => 'sas', 'SHI12696' => 'shi', 'SMO367G1096' => 'smo', 'Solyc01g068630.3' => 'sly', 'Solyc05g011880.3' => 'sly', 'Solyc06g076300.3' => 'sly', 'Solyc09g010940.4' => 'sly', 'Solyc09g075890.3' => 'sly', 'Sopen01g030560' => 'spe', 'Sopen05g006630' => 'spe', 'Sopen06g032720' => 'spe', 'Sopen09g005660' => 'spe', 'Sopen09g030690' => 'spe', 'Sp4g14540' => 'spa', 'Sp4g20030' => 'spa', 'Sp5g01320' => 'spa', 'Sp6g21170' => 'spa', 'Sp6g21180' => 'spa', 'Sp6g21190' => 'spa', 'Sp6g40220' => 'spa', 'TAR362G0122' => 'tar', 'TAR362G1338' => 'tar', 'TAR369G0590' => 'tar', 'TAR371G0824' => 'tar', 'TAR622G1429' => 'tar', 'TAR623G0734' => 'tar', 'TAR625G0441' => 'tar', 'TAR629G0976' => 'tar', 'TAR633G1195' => 'tar', 'TAR636G2660' => 'tar', 'THA.LOC104799440' => 'tha', 'THA.LOC104800966' => 'tha', 'THA.LOC104806559' => 'tha', 'THA.LOC104810765' => 'tha', 'THA.LOC104816266' => 'tha', 'THA.LOC104817419' => 'tha', 'THA.LOC104827021' => 'tha', 'Thecc.01G327400' => 'tca', 'Thecc.04G229200' => 'tca', 'Thecc.05G037400' => 'tca', 'Thecc.09G318600' => 'tca', 'Thecc.09G318700' => 'tca', 'Thhalv10006238m.g' => 'esa', 'Thhalv10014321m.g' => 'esa', 'Thhalv10014335m.g' => 'esa', 'Thhalv10015826m.g' => 'esa', 'Thhalv10017107m.g' => 'esa', 'Thhalv10017180m.g' => 'esa', 'Thhalv10029339m.g' => 'esa', 'TPR.G1699' => 'tpr', 'TPR.G23609' => 'tpr', 'TPR.G3081' => 'tpr', 'TPR.G40397' => 'tpr', 'TPR.G5522' => 'tpr', 'TPR.G5618' => 'tpr', 'TPR.G5626' => 'tpr', 'TWI09G1632' => 'twi', 'TWI23G1230' => 'twi', 'TWI53G1064' => 'twi', 'TWI59G0751' => 'twi', 'TWI74G0947' => 'twi', 'TWI77G0337' => 'twi', 'TWI79G1254' => 'twi', 'unitig_0.g2341' => 'ugi', 'unitig_26.g10006' => 'ugi', 'unitig_26.g10008' => 'ugi', 'unitig_26.g9192' => 'ugi', 'vmacro14547' => 'vma', 'vmacro15333' => 'vma', 'vmacro18743' => 'vma', 'vmacro20166' => 'vma', 'VMungo0331G0523' => 'vmu', 'VMungo0331G1202' => 'vmu', 'VMungo0720G1228' => 'vmu', 'VMungo0720G1514' => 'vmu', 'VMungo1080G0169' => 'vmu', 'VMungo1127G1475' => 'vmu', 'VMungo1383G1208' => 'vmu', 'VMungo1383G1698' => 'vmu', 'Zm00001eb012270' => 'zma', 'Zm00001eb054100' => 'zma', 'Zm00001eb063350' => 'zma', 'Zm00001eb328560' => 'zma', 'Zm00001eb342820' => 'zma', 'Zm00001eb362210' => 'zma', 'Zm00001eb397730' => 'zma', 'Zm00001eb399750' => 'zma' ), 'gf_id' => 'HOM05D000959', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000959' ), 'data_identifier' => 'HOM05D000959', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000959', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '622', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p07100' => 'bna', 'A03p11720' => 'bna', 'A05p08300' => 'bna', 'A05p13380' => 'bna', 'A09p54130' => 'bna', 'A10p16690' => 'bna', 'A10p16700' => 'bna', 'A10p33390' => 'bna', 'Aa31LG10G16020' => 'aar', 'Aa31LG1G11810' => 'aar', 'Aa31LG1G11830' => 'aar', 'Aa31LG1G22510' => 'aar', 'Aa31LG5G4890' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5793' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2310' => 'aag', 'Actinidia08499' => 'ach', 'Actinidia11262' => 'ach', 'Actinidia23926' => 'ach', 'Actinidia34420' => 'ach', 'Actinidia36970' => 'ach', 'Ah.02g111220' => 'amhyb', 'Ah.15g097750' => 'amhyb', 'AL4G27500' => 'aly', 'AL6G11470' => 'aly', 'AL8G35950' => 'aly', 'AL8G35960' => 'aly', 'AL8G35970' => 'aly', 'Aqoxy1G00912' => 'aox', 'Aqoxy2G02253' => 'aox', 'Aqoxy2G02411' => 'aox', 'Aqoxy5G00485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BZ66YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K8ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM4FUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6BF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HFV7XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25JBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0YNNV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MAKK6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P70IT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP2Z6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V61LZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YWP64R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3S9AI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7PGHH' => 'arhy', 'AT2G32150' => 'ath', 'AT3G62040' => 'ath', 'AT5G02230' => 'ath', 'AT5G59480' => 'ath', 'AT5G59490' => 'ath', 'ATR0332G060' => 'atr', 'ATR0559G190' => 'atr', 'ATR0693G294' => 'atr', 'Atru.chr3.3975' => 'acertr', 'Atru.chr3.3976' => 'acertr', 'Atru.chr3.3977' => 'acertr', 'Atru.chr4.2498' => 'acertr', 'Atru.chr5.838' => 'acertr', 'Atru.chr8.1990' => 'acertr', 'Atru.chr8.1991' => 'acertr', 'Atru.chr8.1992' => 'acertr', 'AUR62001759' => 'cqu', 'AUR62009545' => 'cqu', 'AUR62010474' => 'cqu', 'AUR62025820' => 'cqu', 'AUR62030422' => 'cqu', 'AUR62033605' => 'cqu', 'AUR62038615' => 'cqu', 'AUR62041347' => 'cqu', 'BcaB01g04574' => 'bca', 'BcaB02g09263' => 'bca', 'BcaB02g10453' => 'bca', 'BcaB05g22513' => 'bca', 'BcaB08g36253' => 'bca', 'BcaB08g36254' => 'bca', 'BcaC01g06519' => 'bca', 'BcaC02g11889' => 'bca', 'BcaC03g14010' => 'bca', 'BcaC03g18439' => 'bca', 'BcaC04g19765' => 'bca', 'BcaC09g48432' => 'bca', 'BcaNung07302' => 'bca', 'BolC2t06040H' => 'bol', 'BolC2t07346H' => 'bol', 'BolC3t13817H' => 'bol', 'BolC4t22625H' => 'bol', 'BolC4t23297H' => 'bol', 'BolC8t51278H' => 'bol', 'BolC9t58050H' => 'bol', 'BolC9t58051H' => 'bol', 'BolC9t60163H' => 'bol', 'BraA02t04712Z' => 'bra', 'BraA02t05791Z' => 'bra', 'BraA03t10483Z' => 'bra', 'BraA05t19795Z' => 'bra', 'BraA05t20276Z' => 'bra', 'BraA09t40827Z' => 'bra', 'BraA10t43750Z' => 'bra', 'BraA10t43751Z' => 'bra', 'BraA10t45370Z' => 'bra', 'C02p00400' => 'bna', 'C02p12460' => 'bna', 'C03p13680' => 'bna', 'C04p10270' => 'bna', 'C04p17500' => 'bna', 'C08p37010' => 'bna', 'C09p51880' => 'bna', 'C09p51890' => 'bna', 'C09p74300' => 'bna', 'CAN.G179.26' => 'can', 'CAN.G3384.1' => 'can', 'CAN.G394.68' => 'can', 'CAN.G907.13' => 'can', 'CANSAT11G0012' => 'cansat', 'CANSAT25G1586' => 'cansat', 'CANSAT35G0735' => 'cansat', 'CANSAT54G0556' => 'cansat', 'CANSAT64G0356' => 'cansat', 'CANSAT78G2042' => 'cansat', 'CARHR125920' => 'chi', 'CARHR131910' => 'chi', 'CARHR172390' => 'chi', 'CARHR211140' => 'chi', 'CARHR285850' => 'chi', 'CARHR285860' => 'chi', 'Carub.0004s1347' => 'cru', 'Carub.0004s1960' => 'cru', 'Carub.0005s2880' => 'cru', 'Carub.0006s0107' => 'cru', 'Carub.0008s2015' => 'cru', 'Carub.0008s2016' => 'cru', 'Carub.0008s2017' => 'cru', 'Ca_01315_v3' => 'car', 'Ca_05063_v3' => 'car', 'Ca_10231_v3' => 'car', 'Ca_10913_v3' => 'car', 'Ca_19156_v3' => 'car', 'Ca_23644_v3' => 'car', 'Ca_26735_v3' => 'car', 'Cc01_g13130' => 'ccan', 'Cc02_g21690' => 'ccan', 'Cc03_g03600' => 'ccan', 'Cc06_g02510' => 'ccan', 'CDE02G1265' => 'cde', 'CDE05G0415' => 'cde', 'CDE08G1082' => 'cde', 'Cfa005780' => 'cfa', 'Cfa011522' => 'cfa', 'Cfa011523' => 'cfa', 'Cfa015627' => 'cfa', 'Cfa017359' => 'cfa', 'Ciclev10005687m.g' => 'ccl', 'Ciclev10012173m.g' => 'ccl', 'Ciclev10021621m.g' => 'ccl', 'Ciclev10028968m.g' => 'ccl', 'Ciclev10029907m.g' => 'ccl', 'CiPaw.01G164800' => 'cil', 'CiPaw.07G083700' => 'cil', 'CiPaw.07G127000' => 'cil', 'CiPaw.07G136900' => 'cil', 'CiPaw.08G081700' => 'cil', 'CiPaw.09G194600' => 'cil', 'CiPaw.10G146500' => 'cil', 'CiPaw.13G091500' => 'cil', 'CiPaw.13G091600' => 'cil', 'ClCG00G003390' => 'cla', 'ClCG01G007220' => 'cla', 'ClCG03G001370' => 'cla', 'ClCG04G008100' => 'cla', 'ClCG06G006110' => 'cla', 'ClCG06G006130' => 'cla', 'ClCG10G021210' => 'cla', 'COL.COLO4_07648' => 'col', 'COL.COLO4_07650' => 'col', 'COL.COLO4_07651' => 'col', 'COL.COLO4_14780' => 'col', 'COL.COLO4_18546' => 'col', 'COL.COLO4_18547' => 'col', 'COL.COLO4_23103' => 'col', 'COL.COLO4_30419' => 'col', 'COL.COLO4_34232' => 'col', 'Cpa.g.sc169.20' => 'cpa', 'Cpa.g.sc57.45' => 'cpa', 'Cpa.g.sc58.124' => 'cpa', 'Cpa.g.sc58.125' => 'cpa', 'Cpa.g.sc81.118' => 'cpa', 'Cpa.g.sc81.119' => 'cpa', 'Cre12.g524700' => 'cre', 'CsaV3_1G034430' => 'csa', 'CsaV3_1G034440' => 'csa', 'CsaV3_1G034450' => 'csa', 'CsaV3_3G034830' => 'csa', 'CsaV3_4G025090' => 'csa', 'CsaV3_5G018660' => 'csa', 'CsaV3_6G038160' => 'csa', 'CSS0003447' => 'camsi', 'CSS0017840' => 'camsi', 'CSS0019260' => 'camsi', 'CSS0040375' => 'camsi', 'CSS0042533' => 'camsi', 'DCAR_005960' => 'dca', 'DCAR_012104' => 'dca', 'DCAR_012105' => 'dca', 'DCAR_012293' => 'dca', 'DCAR_015632' => 'dca', 'DCAR_024602' => 'dca', 'DCAR_028752' => 'dca', 'Dinv06261' => 'din', 'Dinv13982' => 'din', 'Dinv17029' => 'din', 'Dinv18463' => 'din', 'Dinv33181' => 'din', 'Dinv35585' => 'din', 'Dinv37161' => 'din', 'Dinv42977' => 'din', 'Dinv43122' => 'din', 'Dinv44517' => 'din', 'Duzib093G0256' => 'dzi', 'Duzib106G1254' => 'dzi', 'Duzib128G1789' => 'dzi', 'Duzib133G0633' => 'dzi', 'Duzib138G0510' => 'dzi', 'Duzib150G1084' => 'dzi', 'Duzib168G0488' => 'dzi', 'Duzib168G1523' => 'dzi', 'Duzib170G0133' => 'dzi', 'ECA234G1433' => 'eca', 'ECA236G1432' => 'eca', 'ECA236G2256' => 'eca', 'ECA236G2365' => 'eca', 'ECA236G4830' => 'eca', 'ECA248G1505' => 'eca', 'EL10Ac3g06431' => 'bvu', 'EL10Ac5g12577' => 'bvu', 'EL10Ac6g13533' => 'bvu', 'EL10Ac7g16045' => 'bvu', 'Eucgr.A01281' => 'egr', 'Eucgr.B02326' => 'egr', 'Eucgr.H03532' => 'egr', 'Eucgr.K00553' => 'egr', 'Eucgr.K03116' => 'egr', 'FAN02G3963' => 'fan', 'FAN05G0438' => 'fan', 'FAN09G2434' => 'fan', 'FAN12G3984' => 'fan', 'FAN14G0798' => 'fan', 'FAN17G0652' => 'fan', 'FAN19G1988' => 'fan', 'FAN22G0632' => 'fan', 'FAN23G0387' => 'fan', 'FAN26G1323' => 'fan', 'FAN28G0666' => 'fan', 'FvH4_1g26080' => 'fve', 'FvH4_3g36780' => 'fve', 'FvH4_4g15270' => 'fve', 'FvH4_6g13490' => 'fve', 'Glyma.01G098700' => 'gma', 'Glyma.03G065900' => 'gma', 'Glyma.03G073754' => 'gma', 'Glyma.03G073758' => 'gma', 'Glyma.03G083200' => 'gma', 'Glyma.03G225500' => 'gma', 'Glyma.05G037766' => 'gma', 'Glyma.07G133500' => 'gma', 'Glyma.10G139400' => 'gma', 'Glyma.10G248900' => 'gma', 'Glyma.11G137800' => 'gma', 'Glyma.12G061300' => 'gma', 'Glyma.13G337900' => 'gma', 'Glyma.15G036600' => 'gma', 'Glyma.18G182800' => 'gma', 'Glyma.19G222500' => 'gma', 'Glyma.20G144800' => 'gma', 'Gohir.A01G222000' => 'ghi', 'Gohir.A03G044000' => 'ghi', 'Gohir.A03G044100' => 'ghi', 'Gohir.A04G083100' => 'ghi', 'Gohir.A07G127200' => 'ghi', 'Gohir.A07G132400' => 'ghi', 'Gohir.A08G000700' => 'ghi', 'Gohir.A11G327300' => 'ghi', 'Gohir.D01G211500' => 'ghi', 'Gohir.D03G123400' => 'ghi', 'Gohir.D03G123500' => 'ghi', 'Gohir.D04G121800' => 'ghi', 'Gohir.D07G131500' => 'ghi', 'Gohir.D07G136600' => 'ghi', 'Gohir.D08G011600' => 'ghi', 'Gohir.D11G346200' => 'ghi', 'Gorai.001G142800' => 'gra', 'Gorai.001G148700' => 'gra', 'Gorai.002G257300' => 'gra', 'Gorai.003G130000' => 'gra', 'Gorai.003G130100' => 'gra', 'Gorai.004G005300' => 'gra', 'Gorai.007G376500' => 'gra', 'Gorai.012G104700' => 'gra', 'GSVIVG01017946001' => 'vvi', 'GSVIVG01024928001' => 'vvi', 'GSVIVG01028227001' => 'vvi', 'GSVIVG01034151001' => 'vvi', 'HanXRQChr05g0135031' => 'han', 'HanXRQChr05g0135041' => 'han', 'HanXRQChr05g0140021' => 'han', 'HanXRQChr06g0178981' => 'han', 'HanXRQChr07g0188251' => 'han', 'HanXRQChr08g0235311' => 'han', 'HanXRQChr09g0271011' => 'han', 'HanXRQChr10g0293321' => 'han', 'HanXRQChr13g0388171' => 'han', 'Haze_00916' => 'cav', 'Haze_05063' => 'cav', 'Haze_20814' => 'cav', 'Haze_24128' => 'cav', 'Hma1.2p1_0745F.1_g212010' => 'hma', 'Hma1.2p1_0757F.1_g213260' => 'hma', 'Hma1.2p1_0936F.1_g238840' => 'hma', 'Hma1.2p1_1735F.1_g299890' => 'hma', 'Hma1.2p1_1861F.1_g305685' => 'hma', 'HPP92_003397' => 'vpl', 'HPP92_012597' => 'vpl', 'HPP92_015520' => 'vpl', 'HPP92_015539' => 'vpl', 'HPP92_020373' => 'vpl', 'Hund04938' => 'sun', 'Hund10677' => 'sun', 'Hund11033' => 'sun', 'Hund12155' => 'sun', 'Lalb_Chr01g0022551' => 'lal', 'Lalb_Chr03g0042341' => 'lal', 'Lalb_Chr07g0192931' => 'lal', 'Lalb_Chr12g0209551' => 'lal', 'Lalb_Chr19g0125251' => 'lal', 'Lalb_Chr19g0137891' => 'lal', 'Lalb_Chr21g0304641' => 'lal', 'Lalb_Chr21g0309881' => 'lal', 'Lj1A5T12' => 'lonja', 'Lj1C148G10' => 'lonja', 'Lj2A93T83' => 'lonja', 'Lj3A738G68' => 'lonja', 'Lj3C966T1' => 'lonja', 'Lj3g0018958' => 'lja', 'Lj3g0021831' => 'lja', 'Lj3g0025443' => 'lja', 'Lj4g0026809' => 'lja', 'Lj5g0012558' => 'lja', 'Lj5g0021586' => 'lja', 'Lsat_1_v5_gn_5_156840' => 'lsa', 'Lsat_1_v5_gn_8_73460' => 'lsa', 'Lsat_1_v5_gn_8_73481' => 'lsa', 'Lsat_1_v5_gn_9_31601' => 'lsa', 'Lsat_1_v5_gn_9_77320' => 'lsa', 'Manes.01G171300' => 'mes', 'Manes.01G171400' => 'mes', 'Manes.01G236100' => 'mes', 'Manes.02G130500' => 'mes', 'Manes.02G130600' => 'mes', 'Manes.03G180200' => 'mes', 'Manes.05G007000' => 'mes', 'Manes.08G084400' => 'mes', 'Manes.09G092600' => 'mes', 'Manes.15G027900' => 'mes', 'MBI04_g40948_MAGBIO' => 'mbi', 'MBI14_g12123_MAGBIO' => 'mbi', 'MBI18_g28915_MAGBIO' => 'mbi', 'MCO09G053' => 'mco', 'MCO11G782' => 'mco', 'MCO15G215' => 'mco', 'MD03G1088500' => 'mdo', 'MD03G1088600' => 'mdo', 'MD04G1130800' => 'mdo', 'MD09G1291700' => 'mdo', 'MD11G1097500' => 'mdo', 'MD11G1097600' => 'mdo', 'MD12G1143900' => 'mdo', 'MD13G1191400' => 'mdo', 'MD16G1191500' => 'mdo', 'Medtr1g085570' => 'mtr', 'Medtr1g104610' => 'mtr', 'Medtr2g097520' => 'mtr', 'Medtr4g021800' => 'mtr', 'Medtr4g021825' => 'mtr', 'Medtr4g064270' => 'mtr', 'Medtr4g064380' => 'mtr', 'Medtr7g062150' => 'mtr', 'MELO3C003138.2' => 'cme', 'MELO3C005187.2' => 'cme', 'MELO3C009252.2' => 'cme', 'MELO3C014481.2' => 'cme', 'MELO3C020616.2' => 'cme', 'MELO3C020617.2' => 'cme', 'MELO3C020618.2' => 'cme', 'Migut.G00328' => 'egut', 'Migut.J00320' => 'egut', 'Migut.L01000' => 'egut', 'Migut.L01953' => 'egut', 'MSTRG.10253' => 'ama', 'MSTRG.19077' => 'ama', 'MSTRG.26780' => 'ama', 'MSTRG.4023' => 'ama', 'MSTRG.5655' => 'ama', 'MSTRG.9992' => 'ama', 'Nitab4.5_0000043g0310' => 'nta', 'Nitab4.5_0000463g0080' => 'nta', 'Nitab4.5_0000705g0170' => 'nta', 'Nitab4.5_0001326g0060' => 'nta', 'Nitab4.5_0001628g0030' => 'nta', 'Nitab4.5_0002103g0110' => 'nta', 'Nitab4.5_0002946g0030' => 'nta', 'Nitab4.5_0004639g0030' => 'nta', 'Nn2g11149' => 'nnu', 'Nn2g13389' => 'nnu', 'Nn4g25326' => 'nnu', 'Nn4g26290' => 'nnu', 'Nn5g29865' => 'nnu', 'Oeu004163.1' => 'oeu', 'Oeu006901.1' => 'oeu', 'Oeu010096.1' => 'oeu', 'Oeu024340.1' => 'oeu', 'Oeu048369.1' => 'oeu', 'Os01g0973000' => 'osa', 'Os03g0273800' => 'osa', 'Os03g0701200' => 'osa', 'Os03g0834050' => 'osa', 'Os07g0634400' => 'osa', 'Peaxi162Scf00092g01414' => 'pax', 'Peaxi162Scf00165g00818' => 'pax', 'Peaxi162Scf00309g00516' => 'pax', 'Peaxi162Scf00774g00218' => 'pax', 'PGR004G1824' => 'pgr', 'PGR004G2606' => 'pgr', 'PGR031G2716' => 'pgr', 'PGR102G2460' => 'pgr', 'PGR142G2599' => 'pgr', 'PGSC0003DMG400000843' => 'stu', 'PGSC0003DMG400008829' => 'stu', 'PGSC0003DMG400030418' => 'stu', 'PGSC0003DMG400031834' => 'stu', 'PGSC0003DMG401028300' => 'stu', 'PGSC0003DMG402028300' => 'stu', 'Phvul.001G219300' => 'pvu', 'Phvul.007G056000' => 'pvu', 'Phvul.007G208000' => 'pvu', 'Phvul.008G119500' => 'pvu', 'Phvul.010G011200' => 'pvu', 'Phvul.010G014800' => 'pvu', 'Phvul.011G062900' => 'pvu', 'Phvul.L007043' => 'pvu', 'Potri.001G242300' => 'ptr', 'Potri.002G185300' => 'ptr', 'Potri.006G086900' => 'ptr', 'Potri.008G151700' => 'ptr', 'Potri.009G033500' => 'ptr', 'Potri.010G089300' => 'ptr', 'Potri.014G110800' => 'ptr', 'Pp3c27_8130' => 'ppa', 'Pp3c6_27410' => 'ppa', 'PRCOL_00001659' => 'pco', 'PRCOL_00001927' => 'pco', 'PRCOL_00003649' => 'pco', 'Prupe.1G011600' => 'ppe', 'Prupe.3G000800' => 'ppe', 'Prupe.3G001100' => 'ppe', 'Prupe.6G072700' => 'ppe', 'Prupe.6G072800' => 'ppe', 'Prupe.6G257300' => 'ppe', 'Prupe.8G033000' => 'ppe', 'Psat0s2633g0080' => 'psa', 'Psat0s3396g0080' => 'psa', 'Psat0s3396g0200' => 'psa', 'Psat3g139080' => 'psa', 'Psat5g285080' => 'psa', 'Psat6g157760' => 'psa', 'Psat6g208440' => 'psa', 'Psat7g215320' => 'psa', 'Psat7g215400' => 'psa', 'Psat7g235600' => 'psa', 'Psat7g235760' => 'psa', 'PSO063G4603' => 'pso', 'PSO210G0182' => 'pso', 'PSO210G0196' => 'pso', 'PSO339G0394' => 'pso', 'PSO339G4127' => 'pso', 'PSO513G0064' => 'pso', 'PSO761G0079' => 'pso', 'QL01p031003' => 'qlo', 'QL01p031078' => 'qlo', 'QL06p003004' => 'qlo', 'QL07p048731' => 'qlo', 'QL09p037427' => 'qlo', 'RcHm_v2.0_Chr3g0466361' => 'rch', 'RcHm_v2.0_Chr3g0485571' => 'rch', 'RcHm_v2.0_Chr4g0416551' => 'rch', 'RcHm_v2.0_Chr5g0065831' => 'rch', 'Rhsim01G0230500' => 'rsi', 'Rhsim05G0194000' => 'rsi', 'Rhsim08G0250400' => 'rsi', 'Sabra02G0131000' => 'sbr', 'Sabra06G0066300' => 'sbr', 'Sabra08G0115500' => 'sbr', 'Sabra09G0023900' => 'sbr', 'Sabra10G0054000' => 'sbr', 'Sabra14G0081500' => 'sbr', 'Sabra16G0147100' => 'sbr', 'SalBow2G2957' => 'sbo', 'SalBow4G3320' => 'sbo', 'SalBow8G1894' => 'sbo', 'Sc07g0007950' => 'sci', 'Sc12g0001360' => 'sci', 'Sc13g0004330' => 'sci', 'Sc20g0005010' => 'sci', 'Sed0000361' => 'sed', 'Sed0001706' => 'sed', 'Sed0002422' => 'sed', 'Sed0004029' => 'sed', 'Sed0004602' => 'sed', 'Sed0004943' => 'sed', 'Sed0008646' => 'sed', 'Sed0023313' => 'sed', 'Sed0024843' => 'sed', 'SEGI_00081' => 'sgi', 'SEGI_00947' => 'sgi', 'SEGI_04046' => 'sgi', 'SEGI_06880' => 'sgi', 'SEGI_09736' => 'sgi', 'SEGI_12741' => 'sgi', 'SEGI_14530' => 'sgi', 'SEGI_20705' => 'sgi', 'SEGI_26088' => 'sgi', 'SEGI_28323' => 'sgi', 'SEGI_33343' => 'sgi', 'SGA_v2.0_scaffold126G33775' => 'sas', 'SGA_v2.0_scaffold2G01337' => 'sas', 'SGA_v2.0_scaffold38G15006' => 'sas', 'SGA_v2.0_scaffold39G15264' => 'sas', 'SGA_v2.0_scaffold453G51880' => 'sas', 'SHI12696' => 'shi', 'SMO367G1096' => 'smo', 'Solyc01g068630.3' => 'sly', 'Solyc05g011880.3' => 'sly', 'Solyc06g076300.3' => 'sly', 'Solyc09g010940.4' => 'sly', 'Solyc09g075890.3' => 'sly', 'Sopen01g030560' => 'spe', 'Sopen05g006630' => 'spe', 'Sopen06g032720' => 'spe', 'Sopen09g005660' => 'spe', 'Sopen09g030690' => 'spe', 'Sp4g14540' => 'spa', 'Sp4g20030' => 'spa', 'Sp5g01320' => 'spa', 'Sp6g21170' => 'spa', 'Sp6g21180' => 'spa', 'Sp6g21190' => 'spa', 'Sp6g40220' => 'spa', 'TAR362G0122' => 'tar', 'TAR362G1338' => 'tar', 'TAR369G0590' => 'tar', 'TAR371G0824' => 'tar', 'TAR622G1429' => 'tar', 'TAR623G0734' => 'tar', 'TAR625G0441' => 'tar', 'TAR629G0976' => 'tar', 'TAR633G1195' => 'tar', 'TAR636G2660' => 'tar', 'THA.LOC104799440' => 'tha', 'THA.LOC104800966' => 'tha', 'THA.LOC104806559' => 'tha', 'THA.LOC104810765' => 'tha', 'THA.LOC104816266' => 'tha', 'THA.LOC104817419' => 'tha', 'THA.LOC104827021' => 'tha', 'Thecc.01G327400' => 'tca', 'Thecc.04G229200' => 'tca', 'Thecc.05G037400' => 'tca', 'Thecc.09G318600' => 'tca', 'Thecc.09G318700' => 'tca', 'Thhalv10006238m.g' => 'esa', 'Thhalv10014321m.g' => 'esa', 'Thhalv10014335m.g' => 'esa', 'Thhalv10015826m.g' => 'esa', 'Thhalv10017107m.g' => 'esa', 'Thhalv10017180m.g' => 'esa', 'Thhalv10029339m.g' => 'esa', 'TPR.G1699' => 'tpr', 'TPR.G23609' => 'tpr', 'TPR.G3081' => 'tpr', 'TPR.G40397' => 'tpr', 'TPR.G5522' => 'tpr', 'TPR.G5618' => 'tpr', 'TPR.G5626' => 'tpr', 'TWI09G1632' => 'twi', 'TWI23G1230' => 'twi', 'TWI53G1064' => 'twi', 'TWI59G0751' => 'twi', 'TWI74G0947' => 'twi', 'TWI77G0337' => 'twi', 'TWI79G1254' => 'twi', 'unitig_0.g2341' => 'ugi', 'unitig_26.g10006' => 'ugi', 'unitig_26.g10008' => 'ugi', 'unitig_26.g9192' => 'ugi', 'vmacro14547' => 'vma', 'vmacro15333' => 'vma', 'vmacro18743' => 'vma', 'vmacro20166' => 'vma', 'VMungo0331G0523' => 'vmu', 'VMungo0331G1202' => 'vmu', 'VMungo0720G1228' => 'vmu', 'VMungo0720G1514' => 'vmu', 'VMungo1080G0169' => 'vmu', 'VMungo1127G1475' => 'vmu', 'VMungo1383G1208' => 'vmu', 'VMungo1383G1698' => 'vmu', 'Zm00001eb012270' => 'zma', 'Zm00001eb054100' => 'zma', 'Zm00001eb063350' => 'zma', 'Zm00001eb328560' => 'zma', 'Zm00001eb342820' => 'zma', 'Zm00001eb362210' => 'zma', 'Zm00001eb397730' => 'zma', 'Zm00001eb399750' => 'zma' ) $gf_id = 'HOM05D000959' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000959' ) $data_identifier = 'HOM05D000959' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 5, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 5, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 10, 'mbi' => (int) 3, 'mco' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 2, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 3, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 11, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399750' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000959', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '622', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p07100' => 'bna', 'A03p11720' => 'bna', 'A05p08300' => 'bna', 'A05p13380' => 'bna', 'A09p54130' => 'bna', 'A10p16690' => 'bna', 'A10p16700' => 'bna', 'A10p33390' => 'bna', 'Aa31LG10G16020' => 'aar', 'Aa31LG1G11810' => 'aar', 'Aa31LG1G11830' => 'aar', 'Aa31LG1G22510' => 'aar', 'Aa31LG5G4890' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5793' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2310' => 'aag', 'Actinidia08499' => 'ach', 'Actinidia11262' => 'ach', 'Actinidia23926' => 'ach', 'Actinidia34420' => 'ach', 'Actinidia36970' => 'ach', 'Ah.02g111220' => 'amhyb', 'Ah.15g097750' => 'amhyb', 'AL4G27500' => 'aly', 'AL6G11470' => 'aly', 'AL8G35950' => 'aly', 'AL8G35960' => 'aly', 'AL8G35970' => 'aly', 'Aqoxy1G00912' => 'aox', 'Aqoxy2G02253' => 'aox', 'Aqoxy2G02411' => 'aox', 'Aqoxy5G00485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BZ66YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K8ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM4FUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6BF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HFV7XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25JBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0YNNV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MAKK6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P70IT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP2Z6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V61LZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YWP64R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3S9AI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7PGHH' => 'arhy', 'AT2G32150' => 'ath', 'AT3G62040' => 'ath', 'AT5G02230' => 'ath', 'AT5G59480' => 'ath', 'AT5G59490' => 'ath', 'ATR0332G060' => 'atr', 'ATR0559G190' => 'atr', 'ATR0693G294' => 'atr', 'Atru.chr3.3975' => 'acertr', 'Atru.chr3.3976' => 'acertr', 'Atru.chr3.3977' => 'acertr', 'Atru.chr4.2498' => 'acertr', 'Atru.chr5.838' => 'acertr', 'Atru.chr8.1990' => 'acertr', 'Atru.chr8.1991' => 'acertr', 'Atru.chr8.1992' => 'acertr', 'AUR62001759' => 'cqu', 'AUR62009545' => 'cqu', 'AUR62010474' => 'cqu', 'AUR62025820' => 'cqu', 'AUR62030422' => 'cqu', 'AUR62033605' => 'cqu', 'AUR62038615' => 'cqu', 'AUR62041347' => 'cqu', 'BcaB01g04574' => 'bca', 'BcaB02g09263' => 'bca', 'BcaB02g10453' => 'bca', 'BcaB05g22513' => 'bca', 'BcaB08g36253' => 'bca', 'BcaB08g36254' => 'bca', 'BcaC01g06519' => 'bca', 'BcaC02g11889' => 'bca', 'BcaC03g14010' => 'bca', 'BcaC03g18439' => 'bca', 'BcaC04g19765' => 'bca', 'BcaC09g48432' => 'bca', 'BcaNung07302' => 'bca', 'BolC2t06040H' => 'bol', 'BolC2t07346H' => 'bol', 'BolC3t13817H' => 'bol', 'BolC4t22625H' => 'bol', 'BolC4t23297H' => 'bol', 'BolC8t51278H' => 'bol', 'BolC9t58050H' => 'bol', 'BolC9t58051H' => 'bol', 'BolC9t60163H' => 'bol', 'BraA02t04712Z' => 'bra', 'BraA02t05791Z' => 'bra', 'BraA03t10483Z' => 'bra', 'BraA05t19795Z' => 'bra', 'BraA05t20276Z' => 'bra', 'BraA09t40827Z' => 'bra', 'BraA10t43750Z' => 'bra', 'BraA10t43751Z' => 'bra', 'BraA10t45370Z' => 'bra', 'C02p00400' => 'bna', 'C02p12460' => 'bna', 'C03p13680' => 'bna', 'C04p10270' => 'bna', 'C04p17500' => 'bna', 'C08p37010' => 'bna', 'C09p51880' => 'bna', 'C09p51890' => 'bna', 'C09p74300' => 'bna', 'CAN.G179.26' => 'can', 'CAN.G3384.1' => 'can', 'CAN.G394.68' => 'can', 'CAN.G907.13' => 'can', 'CANSAT11G0012' => 'cansat', 'CANSAT25G1586' => 'cansat', 'CANSAT35G0735' => 'cansat', 'CANSAT54G0556' => 'cansat', 'CANSAT64G0356' => 'cansat', 'CANSAT78G2042' => 'cansat', 'CARHR125920' => 'chi', 'CARHR131910' => 'chi', 'CARHR172390' => 'chi', 'CARHR211140' => 'chi', 'CARHR285850' => 'chi', 'CARHR285860' => 'chi', 'Carub.0004s1347' => 'cru', 'Carub.0004s1960' => 'cru', 'Carub.0005s2880' => 'cru', 'Carub.0006s0107' => 'cru', 'Carub.0008s2015' => 'cru', 'Carub.0008s2016' => 'cru', 'Carub.0008s2017' => 'cru', 'Ca_01315_v3' => 'car', 'Ca_05063_v3' => 'car', 'Ca_10231_v3' => 'car', 'Ca_10913_v3' => 'car', 'Ca_19156_v3' => 'car', 'Ca_23644_v3' => 'car', 'Ca_26735_v3' => 'car', 'Cc01_g13130' => 'ccan', 'Cc02_g21690' => 'ccan', 'Cc03_g03600' => 'ccan', 'Cc06_g02510' => 'ccan', 'CDE02G1265' => 'cde', 'CDE05G0415' => 'cde', 'CDE08G1082' => 'cde', 'Cfa005780' => 'cfa', 'Cfa011522' => 'cfa', 'Cfa011523' => 'cfa', 'Cfa015627' => 'cfa', 'Cfa017359' => 'cfa', 'Ciclev10005687m.g' => 'ccl', 'Ciclev10012173m.g' => 'ccl', 'Ciclev10021621m.g' => 'ccl', 'Ciclev10028968m.g' => 'ccl', 'Ciclev10029907m.g' => 'ccl', 'CiPaw.01G164800' => 'cil', 'CiPaw.07G083700' => 'cil', 'CiPaw.07G127000' => 'cil', 'CiPaw.07G136900' => 'cil', 'CiPaw.08G081700' => 'cil', 'CiPaw.09G194600' => 'cil', 'CiPaw.10G146500' => 'cil', 'CiPaw.13G091500' => 'cil', 'CiPaw.13G091600' => 'cil', 'ClCG00G003390' => 'cla', 'ClCG01G007220' => 'cla', 'ClCG03G001370' => 'cla', 'ClCG04G008100' => 'cla', 'ClCG06G006110' => 'cla', 'ClCG06G006130' => 'cla', 'ClCG10G021210' => 'cla', 'COL.COLO4_07648' => 'col', 'COL.COLO4_07650' => 'col', 'COL.COLO4_07651' => 'col', 'COL.COLO4_14780' => 'col', 'COL.COLO4_18546' => 'col', 'COL.COLO4_18547' => 'col', 'COL.COLO4_23103' => 'col', 'COL.COLO4_30419' => 'col', 'COL.COLO4_34232' => 'col', 'Cpa.g.sc169.20' => 'cpa', 'Cpa.g.sc57.45' => 'cpa', 'Cpa.g.sc58.124' => 'cpa', 'Cpa.g.sc58.125' => 'cpa', 'Cpa.g.sc81.118' => 'cpa', 'Cpa.g.sc81.119' => 'cpa', 'Cre12.g524700' => 'cre', 'CsaV3_1G034430' => 'csa', 'CsaV3_1G034440' => 'csa', 'CsaV3_1G034450' => 'csa', 'CsaV3_3G034830' => 'csa', 'CsaV3_4G025090' => 'csa', 'CsaV3_5G018660' => 'csa', 'CsaV3_6G038160' => 'csa', 'CSS0003447' => 'camsi', 'CSS0017840' => 'camsi', 'CSS0019260' => 'camsi', 'CSS0040375' => 'camsi', 'CSS0042533' => 'camsi', 'DCAR_005960' => 'dca', 'DCAR_012104' => 'dca', 'DCAR_012105' => 'dca', 'DCAR_012293' => 'dca', 'DCAR_015632' => 'dca', 'DCAR_024602' => 'dca', 'DCAR_028752' => 'dca', 'Dinv06261' => 'din', 'Dinv13982' => 'din', 'Dinv17029' => 'din', 'Dinv18463' => 'din', 'Dinv33181' => 'din', 'Dinv35585' => 'din', 'Dinv37161' => 'din', 'Dinv42977' => 'din', 'Dinv43122' => 'din', 'Dinv44517' => 'din', 'Duzib093G0256' => 'dzi', 'Duzib106G1254' => 'dzi', 'Duzib128G1789' => 'dzi', 'Duzib133G0633' => 'dzi', 'Duzib138G0510' => 'dzi', 'Duzib150G1084' => 'dzi', 'Duzib168G0488' => 'dzi', 'Duzib168G1523' => 'dzi', 'Duzib170G0133' => 'dzi', 'ECA234G1433' => 'eca', 'ECA236G1432' => 'eca', 'ECA236G2256' => 'eca', 'ECA236G2365' => 'eca', 'ECA236G4830' => 'eca', 'ECA248G1505' => 'eca', 'EL10Ac3g06431' => 'bvu', 'EL10Ac5g12577' => 'bvu', 'EL10Ac6g13533' => 'bvu', 'EL10Ac7g16045' => 'bvu', 'Eucgr.A01281' => 'egr', 'Eucgr.B02326' => 'egr', 'Eucgr.H03532' => 'egr', 'Eucgr.K00553' => 'egr', 'Eucgr.K03116' => 'egr', 'FAN02G3963' => 'fan', 'FAN05G0438' => 'fan', 'FAN09G2434' => 'fan', 'FAN12G3984' => 'fan', 'FAN14G0798' => 'fan', 'FAN17G0652' => 'fan', 'FAN19G1988' => 'fan', 'FAN22G0632' => 'fan', 'FAN23G0387' => 'fan', 'FAN26G1323' => 'fan', 'FAN28G0666' => 'fan', 'FvH4_1g26080' => 'fve', 'FvH4_3g36780' => 'fve', 'FvH4_4g15270' => 'fve', 'FvH4_6g13490' => 'fve', 'Glyma.01G098700' => 'gma', 'Glyma.03G065900' => 'gma', 'Glyma.03G073754' => 'gma', 'Glyma.03G073758' => 'gma', 'Glyma.03G083200' => 'gma', 'Glyma.03G225500' => 'gma', 'Glyma.05G037766' => 'gma', 'Glyma.07G133500' => 'gma', 'Glyma.10G139400' => 'gma', 'Glyma.10G248900' => 'gma', 'Glyma.11G137800' => 'gma', 'Glyma.12G061300' => 'gma', 'Glyma.13G337900' => 'gma', 'Glyma.15G036600' => 'gma', 'Glyma.18G182800' => 'gma', 'Glyma.19G222500' => 'gma', 'Glyma.20G144800' => 'gma', 'Gohir.A01G222000' => 'ghi', 'Gohir.A03G044000' => 'ghi', 'Gohir.A03G044100' => 'ghi', 'Gohir.A04G083100' => 'ghi', 'Gohir.A07G127200' => 'ghi', 'Gohir.A07G132400' => 'ghi', 'Gohir.A08G000700' => 'ghi', 'Gohir.A11G327300' => 'ghi', 'Gohir.D01G211500' => 'ghi', 'Gohir.D03G123400' => 'ghi', 'Gohir.D03G123500' => 'ghi', 'Gohir.D04G121800' => 'ghi', 'Gohir.D07G131500' => 'ghi', 'Gohir.D07G136600' => 'ghi', 'Gohir.D08G011600' => 'ghi', 'Gohir.D11G346200' => 'ghi', 'Gorai.001G142800' => 'gra', 'Gorai.001G148700' => 'gra', 'Gorai.002G257300' => 'gra', 'Gorai.003G130000' => 'gra', 'Gorai.003G130100' => 'gra', 'Gorai.004G005300' => 'gra', 'Gorai.007G376500' => 'gra', 'Gorai.012G104700' => 'gra', 'GSVIVG01017946001' => 'vvi', 'GSVIVG01024928001' => 'vvi', 'GSVIVG01028227001' => 'vvi', 'GSVIVG01034151001' => 'vvi', 'HanXRQChr05g0135031' => 'han', 'HanXRQChr05g0135041' => 'han', 'HanXRQChr05g0140021' => 'han', 'HanXRQChr06g0178981' => 'han', 'HanXRQChr07g0188251' => 'han', 'HanXRQChr08g0235311' => 'han', 'HanXRQChr09g0271011' => 'han', 'HanXRQChr10g0293321' => 'han', 'HanXRQChr13g0388171' => 'han', 'Haze_00916' => 'cav', 'Haze_05063' => 'cav', 'Haze_20814' => 'cav', 'Haze_24128' => 'cav', 'Hma1.2p1_0745F.1_g212010' => 'hma', 'Hma1.2p1_0757F.1_g213260' => 'hma', 'Hma1.2p1_0936F.1_g238840' => 'hma', 'Hma1.2p1_1735F.1_g299890' => 'hma', 'Hma1.2p1_1861F.1_g305685' => 'hma', 'HPP92_003397' => 'vpl', 'HPP92_012597' => 'vpl', 'HPP92_015520' => 'vpl', 'HPP92_015539' => 'vpl', 'HPP92_020373' => 'vpl', 'Hund04938' => 'sun', 'Hund10677' => 'sun', 'Hund11033' => 'sun', 'Hund12155' => 'sun', 'Lalb_Chr01g0022551' => 'lal', 'Lalb_Chr03g0042341' => 'lal', 'Lalb_Chr07g0192931' => 'lal', 'Lalb_Chr12g0209551' => 'lal', 'Lalb_Chr19g0125251' => 'lal', 'Lalb_Chr19g0137891' => 'lal', 'Lalb_Chr21g0304641' => 'lal', 'Lalb_Chr21g0309881' => 'lal', 'Lj1A5T12' => 'lonja', 'Lj1C148G10' => 'lonja', 'Lj2A93T83' => 'lonja', 'Lj3A738G68' => 'lonja', 'Lj3C966T1' => 'lonja', 'Lj3g0018958' => 'lja', 'Lj3g0021831' => 'lja', 'Lj3g0025443' => 'lja', 'Lj4g0026809' => 'lja', 'Lj5g0012558' => 'lja', 'Lj5g0021586' => 'lja', 'Lsat_1_v5_gn_5_156840' => 'lsa', 'Lsat_1_v5_gn_8_73460' => 'lsa', 'Lsat_1_v5_gn_8_73481' => 'lsa', 'Lsat_1_v5_gn_9_31601' => 'lsa', 'Lsat_1_v5_gn_9_77320' => 'lsa', 'Manes.01G171300' => 'mes', 'Manes.01G171400' => 'mes', 'Manes.01G236100' => 'mes', 'Manes.02G130500' => 'mes', 'Manes.02G130600' => 'mes', 'Manes.03G180200' => 'mes', 'Manes.05G007000' => 'mes', 'Manes.08G084400' => 'mes', 'Manes.09G092600' => 'mes', 'Manes.15G027900' => 'mes', 'MBI04_g40948_MAGBIO' => 'mbi', 'MBI14_g12123_MAGBIO' => 'mbi', 'MBI18_g28915_MAGBIO' => 'mbi', 'MCO09G053' => 'mco', 'MCO11G782' => 'mco', 'MCO15G215' => 'mco', 'MD03G1088500' => 'mdo', 'MD03G1088600' => 'mdo', 'MD04G1130800' => 'mdo', 'MD09G1291700' => 'mdo', 'MD11G1097500' => 'mdo', 'MD11G1097600' => 'mdo', 'MD12G1143900' => 'mdo', 'MD13G1191400' => 'mdo', 'MD16G1191500' => 'mdo', 'Medtr1g085570' => 'mtr', 'Medtr1g104610' => 'mtr', 'Medtr2g097520' => 'mtr', 'Medtr4g021800' => 'mtr', 'Medtr4g021825' => 'mtr', 'Medtr4g064270' => 'mtr', 'Medtr4g064380' => 'mtr', 'Medtr7g062150' => 'mtr', 'MELO3C003138.2' => 'cme', 'MELO3C005187.2' => 'cme', 'MELO3C009252.2' => 'cme', 'MELO3C014481.2' => 'cme', 'MELO3C020616.2' => 'cme', 'MELO3C020617.2' => 'cme', 'MELO3C020618.2' => 'cme', 'Migut.G00328' => 'egut', 'Migut.J00320' => 'egut', 'Migut.L01000' => 'egut', 'Migut.L01953' => 'egut', 'MSTRG.10253' => 'ama', 'MSTRG.19077' => 'ama', 'MSTRG.26780' => 'ama', 'MSTRG.4023' => 'ama', 'MSTRG.5655' => 'ama', 'MSTRG.9992' => 'ama', 'Nitab4.5_0000043g0310' => 'nta', 'Nitab4.5_0000463g0080' => 'nta', 'Nitab4.5_0000705g0170' => 'nta', 'Nitab4.5_0001326g0060' => 'nta', 'Nitab4.5_0001628g0030' => 'nta', 'Nitab4.5_0002103g0110' => 'nta', 'Nitab4.5_0002946g0030' => 'nta', 'Nitab4.5_0004639g0030' => 'nta', 'Nn2g11149' => 'nnu', 'Nn2g13389' => 'nnu', 'Nn4g25326' => 'nnu', 'Nn4g26290' => 'nnu', 'Nn5g29865' => 'nnu', 'Oeu004163.1' => 'oeu', 'Oeu006901.1' => 'oeu', 'Oeu010096.1' => 'oeu', 'Oeu024340.1' => 'oeu', 'Oeu048369.1' => 'oeu', 'Os01g0973000' => 'osa', 'Os03g0273800' => 'osa', 'Os03g0701200' => 'osa', 'Os03g0834050' => 'osa', 'Os07g0634400' => 'osa', 'Peaxi162Scf00092g01414' => 'pax', 'Peaxi162Scf00165g00818' => 'pax', 'Peaxi162Scf00309g00516' => 'pax', 'Peaxi162Scf00774g00218' => 'pax', 'PGR004G1824' => 'pgr', 'PGR004G2606' => 'pgr', 'PGR031G2716' => 'pgr', 'PGR102G2460' => 'pgr', 'PGR142G2599' => 'pgr', 'PGSC0003DMG400000843' => 'stu', 'PGSC0003DMG400008829' => 'stu', 'PGSC0003DMG400030418' => 'stu', 'PGSC0003DMG400031834' => 'stu', 'PGSC0003DMG401028300' => 'stu', 'PGSC0003DMG402028300' => 'stu', 'Phvul.001G219300' => 'pvu', 'Phvul.007G056000' => 'pvu', 'Phvul.007G208000' => 'pvu', 'Phvul.008G119500' => 'pvu', 'Phvul.010G011200' => 'pvu', 'Phvul.010G014800' => 'pvu', 'Phvul.011G062900' => 'pvu', 'Phvul.L007043' => 'pvu', 'Potri.001G242300' => 'ptr', 'Potri.002G185300' => 'ptr', 'Potri.006G086900' => 'ptr', 'Potri.008G151700' => 'ptr', 'Potri.009G033500' => 'ptr', 'Potri.010G089300' => 'ptr', 'Potri.014G110800' => 'ptr', 'Pp3c27_8130' => 'ppa', 'Pp3c6_27410' => 'ppa', 'PRCOL_00001659' => 'pco', 'PRCOL_00001927' => 'pco', 'PRCOL_00003649' => 'pco', 'Prupe.1G011600' => 'ppe', 'Prupe.3G000800' => 'ppe', 'Prupe.3G001100' => 'ppe', 'Prupe.6G072700' => 'ppe', 'Prupe.6G072800' => 'ppe', 'Prupe.6G257300' => 'ppe', 'Prupe.8G033000' => 'ppe', 'Psat0s2633g0080' => 'psa', 'Psat0s3396g0080' => 'psa', 'Psat0s3396g0200' => 'psa', 'Psat3g139080' => 'psa', 'Psat5g285080' => 'psa', 'Psat6g157760' => 'psa', 'Psat6g208440' => 'psa', 'Psat7g215320' => 'psa', 'Psat7g215400' => 'psa', 'Psat7g235600' => 'psa', 'Psat7g235760' => 'psa', 'PSO063G4603' => 'pso', 'PSO210G0182' => 'pso', 'PSO210G0196' => 'pso', 'PSO339G0394' => 'pso', 'PSO339G4127' => 'pso', 'PSO513G0064' => 'pso', 'PSO761G0079' => 'pso', 'QL01p031003' => 'qlo', 'QL01p031078' => 'qlo', 'QL06p003004' => 'qlo', 'QL07p048731' => 'qlo', 'QL09p037427' => 'qlo', 'RcHm_v2.0_Chr3g0466361' => 'rch', 'RcHm_v2.0_Chr3g0485571' => 'rch', 'RcHm_v2.0_Chr4g0416551' => 'rch', 'RcHm_v2.0_Chr5g0065831' => 'rch', 'Rhsim01G0230500' => 'rsi', 'Rhsim05G0194000' => 'rsi', 'Rhsim08G0250400' => 'rsi', 'Sabra02G0131000' => 'sbr', 'Sabra06G0066300' => 'sbr', 'Sabra08G0115500' => 'sbr', 'Sabra09G0023900' => 'sbr', 'Sabra10G0054000' => 'sbr', 'Sabra14G0081500' => 'sbr', 'Sabra16G0147100' => 'sbr', 'SalBow2G2957' => 'sbo', 'SalBow4G3320' => 'sbo', 'SalBow8G1894' => 'sbo', 'Sc07g0007950' => 'sci', 'Sc12g0001360' => 'sci', 'Sc13g0004330' => 'sci', 'Sc20g0005010' => 'sci', 'Sed0000361' => 'sed', 'Sed0001706' => 'sed', 'Sed0002422' => 'sed', 'Sed0004029' => 'sed', 'Sed0004602' => 'sed', 'Sed0004943' => 'sed', 'Sed0008646' => 'sed', 'Sed0023313' => 'sed', 'Sed0024843' => 'sed', 'SEGI_00081' => 'sgi', 'SEGI_00947' => 'sgi', 'SEGI_04046' => 'sgi', 'SEGI_06880' => 'sgi', 'SEGI_09736' => 'sgi', 'SEGI_12741' => 'sgi', 'SEGI_14530' => 'sgi', 'SEGI_20705' => 'sgi', 'SEGI_26088' => 'sgi', 'SEGI_28323' => 'sgi', 'SEGI_33343' => 'sgi', 'SGA_v2.0_scaffold126G33775' => 'sas', 'SGA_v2.0_scaffold2G01337' => 'sas', 'SGA_v2.0_scaffold38G15006' => 'sas', 'SGA_v2.0_scaffold39G15264' => 'sas', 'SGA_v2.0_scaffold453G51880' => 'sas', 'SHI12696' => 'shi', 'SMO367G1096' => 'smo', 'Solyc01g068630.3' => 'sly', 'Solyc05g011880.3' => 'sly', 'Solyc06g076300.3' => 'sly', 'Solyc09g010940.4' => 'sly', 'Solyc09g075890.3' => 'sly', 'Sopen01g030560' => 'spe', 'Sopen05g006630' => 'spe', 'Sopen06g032720' => 'spe', 'Sopen09g005660' => 'spe', 'Sopen09g030690' => 'spe', 'Sp4g14540' => 'spa', 'Sp4g20030' => 'spa', 'Sp5g01320' => 'spa', 'Sp6g21170' => 'spa', 'Sp6g21180' => 'spa', 'Sp6g21190' => 'spa', 'Sp6g40220' => 'spa', 'TAR362G0122' => 'tar', 'TAR362G1338' => 'tar', 'TAR369G0590' => 'tar', 'TAR371G0824' => 'tar', 'TAR622G1429' => 'tar', 'TAR623G0734' => 'tar', 'TAR625G0441' => 'tar', 'TAR629G0976' => 'tar', 'TAR633G1195' => 'tar', 'TAR636G2660' => 'tar', 'THA.LOC104799440' => 'tha', 'THA.LOC104800966' => 'tha', 'THA.LOC104806559' => 'tha', 'THA.LOC104810765' => 'tha', 'THA.LOC104816266' => 'tha', 'THA.LOC104817419' => 'tha', 'THA.LOC104827021' => 'tha', 'Thecc.01G327400' => 'tca', 'Thecc.04G229200' => 'tca', 'Thecc.05G037400' => 'tca', 'Thecc.09G318600' => 'tca', 'Thecc.09G318700' => 'tca', 'Thhalv10006238m.g' => 'esa', 'Thhalv10014321m.g' => 'esa', 'Thhalv10014335m.g' => 'esa', 'Thhalv10015826m.g' => 'esa', 'Thhalv10017107m.g' => 'esa', 'Thhalv10017180m.g' => 'esa', 'Thhalv10029339m.g' => 'esa', 'TPR.G1699' => 'tpr', 'TPR.G23609' => 'tpr', 'TPR.G3081' => 'tpr', 'TPR.G40397' => 'tpr', 'TPR.G5522' => 'tpr', 'TPR.G5618' => 'tpr', 'TPR.G5626' => 'tpr', 'TWI09G1632' => 'twi', 'TWI23G1230' => 'twi', 'TWI53G1064' => 'twi', 'TWI59G0751' => 'twi', 'TWI74G0947' => 'twi', 'TWI77G0337' => 'twi', 'TWI79G1254' => 'twi', 'unitig_0.g2341' => 'ugi', 'unitig_26.g10006' => 'ugi', 'unitig_26.g10008' => 'ugi', 'unitig_26.g9192' => 'ugi', 'vmacro14547' => 'vma', 'vmacro15333' => 'vma', 'vmacro18743' => 'vma', 'vmacro20166' => 'vma', 'VMungo0331G0523' => 'vmu', 'VMungo0331G1202' => 'vmu', 'VMungo0720G1228' => 'vmu', 'VMungo0720G1514' => 'vmu', 'VMungo1080G0169' => 'vmu', 'VMungo1127G1475' => 'vmu', 'VMungo1383G1208' => 'vmu', 'VMungo1383G1698' => 'vmu', 'Zm00001eb012270' => 'zma', 'Zm00001eb054100' => 'zma', 'Zm00001eb063350' => 'zma', 'Zm00001eb328560' => 'zma', 'Zm00001eb342820' => 'zma', 'Zm00001eb362210' => 'zma', 'Zm00001eb397730' => 'zma', 'Zm00001eb399750' => 'zma' ), 'gf_id' => 'HOM05D000959', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000959' ), 'data_identifier' => 'HOM05D000959', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000959', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '622', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p07100' => 'bna', 'A03p11720' => 'bna', 'A05p08300' => 'bna', 'A05p13380' => 'bna', 'A09p54130' => 'bna', 'A10p16690' => 'bna', 'A10p16700' => 'bna', 'A10p33390' => 'bna', 'Aa31LG10G16020' => 'aar', 'Aa31LG1G11810' => 'aar', 'Aa31LG1G11830' => 'aar', 'Aa31LG1G22510' => 'aar', 'Aa31LG5G4890' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5793' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2310' => 'aag', 'Actinidia08499' => 'ach', 'Actinidia11262' => 'ach', 'Actinidia23926' => 'ach', 'Actinidia34420' => 'ach', 'Actinidia36970' => 'ach', 'Ah.02g111220' => 'amhyb', 'Ah.15g097750' => 'amhyb', 'AL4G27500' => 'aly', 'AL6G11470' => 'aly', 'AL8G35950' => 'aly', 'AL8G35960' => 'aly', 'AL8G35970' => 'aly', 'Aqoxy1G00912' => 'aox', 'Aqoxy2G02253' => 'aox', 'Aqoxy2G02411' => 'aox', 'Aqoxy5G00485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BZ66YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K8ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM4FUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6BF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HFV7XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25JBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0YNNV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MAKK6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P70IT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP2Z6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V61LZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YWP64R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3S9AI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7PGHH' => 'arhy', 'AT2G32150' => 'ath', 'AT3G62040' => 'ath', 'AT5G02230' => 'ath', 'AT5G59480' => 'ath', 'AT5G59490' => 'ath', 'ATR0332G060' => 'atr', 'ATR0559G190' => 'atr', 'ATR0693G294' => 'atr', 'Atru.chr3.3975' => 'acertr', 'Atru.chr3.3976' => 'acertr', 'Atru.chr3.3977' => 'acertr', 'Atru.chr4.2498' => 'acertr', 'Atru.chr5.838' => 'acertr', 'Atru.chr8.1990' => 'acertr', 'Atru.chr8.1991' => 'acertr', 'Atru.chr8.1992' => 'acertr', 'AUR62001759' => 'cqu', 'AUR62009545' => 'cqu', 'AUR62010474' => 'cqu', 'AUR62025820' => 'cqu', 'AUR62030422' => 'cqu', 'AUR62033605' => 'cqu', 'AUR62038615' => 'cqu', 'AUR62041347' => 'cqu', 'BcaB01g04574' => 'bca', 'BcaB02g09263' => 'bca', 'BcaB02g10453' => 'bca', 'BcaB05g22513' => 'bca', 'BcaB08g36253' => 'bca', 'BcaB08g36254' => 'bca', 'BcaC01g06519' => 'bca', 'BcaC02g11889' => 'bca', 'BcaC03g14010' => 'bca', 'BcaC03g18439' => 'bca', 'BcaC04g19765' => 'bca', 'BcaC09g48432' => 'bca', 'BcaNung07302' => 'bca', 'BolC2t06040H' => 'bol', 'BolC2t07346H' => 'bol', 'BolC3t13817H' => 'bol', 'BolC4t22625H' => 'bol', 'BolC4t23297H' => 'bol', 'BolC8t51278H' => 'bol', 'BolC9t58050H' => 'bol', 'BolC9t58051H' => 'bol', 'BolC9t60163H' => 'bol', 'BraA02t04712Z' => 'bra', 'BraA02t05791Z' => 'bra', 'BraA03t10483Z' => 'bra', 'BraA05t19795Z' => 'bra', 'BraA05t20276Z' => 'bra', 'BraA09t40827Z' => 'bra', 'BraA10t43750Z' => 'bra', 'BraA10t43751Z' => 'bra', 'BraA10t45370Z' => 'bra', 'C02p00400' => 'bna', 'C02p12460' => 'bna', 'C03p13680' => 'bna', 'C04p10270' => 'bna', 'C04p17500' => 'bna', 'C08p37010' => 'bna', 'C09p51880' => 'bna', 'C09p51890' => 'bna', 'C09p74300' => 'bna', 'CAN.G179.26' => 'can', 'CAN.G3384.1' => 'can', 'CAN.G394.68' => 'can', 'CAN.G907.13' => 'can', 'CANSAT11G0012' => 'cansat', 'CANSAT25G1586' => 'cansat', 'CANSAT35G0735' => 'cansat', 'CANSAT54G0556' => 'cansat', 'CANSAT64G0356' => 'cansat', 'CANSAT78G2042' => 'cansat', 'CARHR125920' => 'chi', 'CARHR131910' => 'chi', 'CARHR172390' => 'chi', 'CARHR211140' => 'chi', 'CARHR285850' => 'chi', 'CARHR285860' => 'chi', 'Carub.0004s1347' => 'cru', 'Carub.0004s1960' => 'cru', 'Carub.0005s2880' => 'cru', 'Carub.0006s0107' => 'cru', 'Carub.0008s2015' => 'cru', 'Carub.0008s2016' => 'cru', 'Carub.0008s2017' => 'cru', 'Ca_01315_v3' => 'car', 'Ca_05063_v3' => 'car', 'Ca_10231_v3' => 'car', 'Ca_10913_v3' => 'car', 'Ca_19156_v3' => 'car', 'Ca_23644_v3' => 'car', 'Ca_26735_v3' => 'car', 'Cc01_g13130' => 'ccan', 'Cc02_g21690' => 'ccan', 'Cc03_g03600' => 'ccan', 'Cc06_g02510' => 'ccan', 'CDE02G1265' => 'cde', 'CDE05G0415' => 'cde', 'CDE08G1082' => 'cde', 'Cfa005780' => 'cfa', 'Cfa011522' => 'cfa', 'Cfa011523' => 'cfa', 'Cfa015627' => 'cfa', 'Cfa017359' => 'cfa', 'Ciclev10005687m.g' => 'ccl', 'Ciclev10012173m.g' => 'ccl', 'Ciclev10021621m.g' => 'ccl', 'Ciclev10028968m.g' => 'ccl', 'Ciclev10029907m.g' => 'ccl', 'CiPaw.01G164800' => 'cil', 'CiPaw.07G083700' => 'cil', 'CiPaw.07G127000' => 'cil', 'CiPaw.07G136900' => 'cil', 'CiPaw.08G081700' => 'cil', 'CiPaw.09G194600' => 'cil', 'CiPaw.10G146500' => 'cil', 'CiPaw.13G091500' => 'cil', 'CiPaw.13G091600' => 'cil', 'ClCG00G003390' => 'cla', 'ClCG01G007220' => 'cla', 'ClCG03G001370' => 'cla', 'ClCG04G008100' => 'cla', 'ClCG06G006110' => 'cla', 'ClCG06G006130' => 'cla', 'ClCG10G021210' => 'cla', 'COL.COLO4_07648' => 'col', 'COL.COLO4_07650' => 'col', 'COL.COLO4_07651' => 'col', 'COL.COLO4_14780' => 'col', 'COL.COLO4_18546' => 'col', 'COL.COLO4_18547' => 'col', 'COL.COLO4_23103' => 'col', 'COL.COLO4_30419' => 'col', 'COL.COLO4_34232' => 'col', 'Cpa.g.sc169.20' => 'cpa', 'Cpa.g.sc57.45' => 'cpa', 'Cpa.g.sc58.124' => 'cpa', 'Cpa.g.sc58.125' => 'cpa', 'Cpa.g.sc81.118' => 'cpa', 'Cpa.g.sc81.119' => 'cpa', 'Cre12.g524700' => 'cre', 'CsaV3_1G034430' => 'csa', 'CsaV3_1G034440' => 'csa', 'CsaV3_1G034450' => 'csa', 'CsaV3_3G034830' => 'csa', 'CsaV3_4G025090' => 'csa', 'CsaV3_5G018660' => 'csa', 'CsaV3_6G038160' => 'csa', 'CSS0003447' => 'camsi', 'CSS0017840' => 'camsi', 'CSS0019260' => 'camsi', 'CSS0040375' => 'camsi', 'CSS0042533' => 'camsi', 'DCAR_005960' => 'dca', 'DCAR_012104' => 'dca', 'DCAR_012105' => 'dca', 'DCAR_012293' => 'dca', 'DCAR_015632' => 'dca', 'DCAR_024602' => 'dca', 'DCAR_028752' => 'dca', 'Dinv06261' => 'din', 'Dinv13982' => 'din', 'Dinv17029' => 'din', 'Dinv18463' => 'din', 'Dinv33181' => 'din', 'Dinv35585' => 'din', 'Dinv37161' => 'din', 'Dinv42977' => 'din', 'Dinv43122' => 'din', 'Dinv44517' => 'din', 'Duzib093G0256' => 'dzi', 'Duzib106G1254' => 'dzi', 'Duzib128G1789' => 'dzi', 'Duzib133G0633' => 'dzi', 'Duzib138G0510' => 'dzi', 'Duzib150G1084' => 'dzi', 'Duzib168G0488' => 'dzi', 'Duzib168G1523' => 'dzi', 'Duzib170G0133' => 'dzi', 'ECA234G1433' => 'eca', 'ECA236G1432' => 'eca', 'ECA236G2256' => 'eca', 'ECA236G2365' => 'eca', 'ECA236G4830' => 'eca', 'ECA248G1505' => 'eca', 'EL10Ac3g06431' => 'bvu', 'EL10Ac5g12577' => 'bvu', 'EL10Ac6g13533' => 'bvu', 'EL10Ac7g16045' => 'bvu', 'Eucgr.A01281' => 'egr', 'Eucgr.B02326' => 'egr', 'Eucgr.H03532' => 'egr', 'Eucgr.K00553' => 'egr', 'Eucgr.K03116' => 'egr', 'FAN02G3963' => 'fan', 'FAN05G0438' => 'fan', 'FAN09G2434' => 'fan', 'FAN12G3984' => 'fan', 'FAN14G0798' => 'fan', 'FAN17G0652' => 'fan', 'FAN19G1988' => 'fan', 'FAN22G0632' => 'fan', 'FAN23G0387' => 'fan', 'FAN26G1323' => 'fan', 'FAN28G0666' => 'fan', 'FvH4_1g26080' => 'fve', 'FvH4_3g36780' => 'fve', 'FvH4_4g15270' => 'fve', 'FvH4_6g13490' => 'fve', 'Glyma.01G098700' => 'gma', 'Glyma.03G065900' => 'gma', 'Glyma.03G073754' => 'gma', 'Glyma.03G073758' => 'gma', 'Glyma.03G083200' => 'gma', 'Glyma.03G225500' => 'gma', 'Glyma.05G037766' => 'gma', 'Glyma.07G133500' => 'gma', 'Glyma.10G139400' => 'gma', 'Glyma.10G248900' => 'gma', 'Glyma.11G137800' => 'gma', 'Glyma.12G061300' => 'gma', 'Glyma.13G337900' => 'gma', 'Glyma.15G036600' => 'gma', 'Glyma.18G182800' => 'gma', 'Glyma.19G222500' => 'gma', 'Glyma.20G144800' => 'gma', 'Gohir.A01G222000' => 'ghi', 'Gohir.A03G044000' => 'ghi', 'Gohir.A03G044100' => 'ghi', 'Gohir.A04G083100' => 'ghi', 'Gohir.A07G127200' => 'ghi', 'Gohir.A07G132400' => 'ghi', 'Gohir.A08G000700' => 'ghi', 'Gohir.A11G327300' => 'ghi', 'Gohir.D01G211500' => 'ghi', 'Gohir.D03G123400' => 'ghi', 'Gohir.D03G123500' => 'ghi', 'Gohir.D04G121800' => 'ghi', 'Gohir.D07G131500' => 'ghi', 'Gohir.D07G136600' => 'ghi', 'Gohir.D08G011600' => 'ghi', 'Gohir.D11G346200' => 'ghi', 'Gorai.001G142800' => 'gra', 'Gorai.001G148700' => 'gra', 'Gorai.002G257300' => 'gra', 'Gorai.003G130000' => 'gra', 'Gorai.003G130100' => 'gra', 'Gorai.004G005300' => 'gra', 'Gorai.007G376500' => 'gra', 'Gorai.012G104700' => 'gra', 'GSVIVG01017946001' => 'vvi', 'GSVIVG01024928001' => 'vvi', 'GSVIVG01028227001' => 'vvi', 'GSVIVG01034151001' => 'vvi', 'HanXRQChr05g0135031' => 'han', 'HanXRQChr05g0135041' => 'han', 'HanXRQChr05g0140021' => 'han', 'HanXRQChr06g0178981' => 'han', 'HanXRQChr07g0188251' => 'han', 'HanXRQChr08g0235311' => 'han', 'HanXRQChr09g0271011' => 'han', 'HanXRQChr10g0293321' => 'han', 'HanXRQChr13g0388171' => 'han', 'Haze_00916' => 'cav', 'Haze_05063' => 'cav', 'Haze_20814' => 'cav', 'Haze_24128' => 'cav', 'Hma1.2p1_0745F.1_g212010' => 'hma', 'Hma1.2p1_0757F.1_g213260' => 'hma', 'Hma1.2p1_0936F.1_g238840' => 'hma', 'Hma1.2p1_1735F.1_g299890' => 'hma', 'Hma1.2p1_1861F.1_g305685' => 'hma', 'HPP92_003397' => 'vpl', 'HPP92_012597' => 'vpl', 'HPP92_015520' => 'vpl', 'HPP92_015539' => 'vpl', 'HPP92_020373' => 'vpl', 'Hund04938' => 'sun', 'Hund10677' => 'sun', 'Hund11033' => 'sun', 'Hund12155' => 'sun', 'Lalb_Chr01g0022551' => 'lal', 'Lalb_Chr03g0042341' => 'lal', 'Lalb_Chr07g0192931' => 'lal', 'Lalb_Chr12g0209551' => 'lal', 'Lalb_Chr19g0125251' => 'lal', 'Lalb_Chr19g0137891' => 'lal', 'Lalb_Chr21g0304641' => 'lal', 'Lalb_Chr21g0309881' => 'lal', 'Lj1A5T12' => 'lonja', 'Lj1C148G10' => 'lonja', 'Lj2A93T83' => 'lonja', 'Lj3A738G68' => 'lonja', 'Lj3C966T1' => 'lonja', 'Lj3g0018958' => 'lja', 'Lj3g0021831' => 'lja', 'Lj3g0025443' => 'lja', 'Lj4g0026809' => 'lja', 'Lj5g0012558' => 'lja', 'Lj5g0021586' => 'lja', 'Lsat_1_v5_gn_5_156840' => 'lsa', 'Lsat_1_v5_gn_8_73460' => 'lsa', 'Lsat_1_v5_gn_8_73481' => 'lsa', 'Lsat_1_v5_gn_9_31601' => 'lsa', 'Lsat_1_v5_gn_9_77320' => 'lsa', 'Manes.01G171300' => 'mes', 'Manes.01G171400' => 'mes', 'Manes.01G236100' => 'mes', 'Manes.02G130500' => 'mes', 'Manes.02G130600' => 'mes', 'Manes.03G180200' => 'mes', 'Manes.05G007000' => 'mes', 'Manes.08G084400' => 'mes', 'Manes.09G092600' => 'mes', 'Manes.15G027900' => 'mes', 'MBI04_g40948_MAGBIO' => 'mbi', 'MBI14_g12123_MAGBIO' => 'mbi', 'MBI18_g28915_MAGBIO' => 'mbi', 'MCO09G053' => 'mco', 'MCO11G782' => 'mco', 'MCO15G215' => 'mco', 'MD03G1088500' => 'mdo', 'MD03G1088600' => 'mdo', 'MD04G1130800' => 'mdo', 'MD09G1291700' => 'mdo', 'MD11G1097500' => 'mdo', 'MD11G1097600' => 'mdo', 'MD12G1143900' => 'mdo', 'MD13G1191400' => 'mdo', 'MD16G1191500' => 'mdo', 'Medtr1g085570' => 'mtr', 'Medtr1g104610' => 'mtr', 'Medtr2g097520' => 'mtr', 'Medtr4g021800' => 'mtr', 'Medtr4g021825' => 'mtr', 'Medtr4g064270' => 'mtr', 'Medtr4g064380' => 'mtr', 'Medtr7g062150' => 'mtr', 'MELO3C003138.2' => 'cme', 'MELO3C005187.2' => 'cme', 'MELO3C009252.2' => 'cme', 'MELO3C014481.2' => 'cme', 'MELO3C020616.2' => 'cme', 'MELO3C020617.2' => 'cme', 'MELO3C020618.2' => 'cme', 'Migut.G00328' => 'egut', 'Migut.J00320' => 'egut', 'Migut.L01000' => 'egut', 'Migut.L01953' => 'egut', 'MSTRG.10253' => 'ama', 'MSTRG.19077' => 'ama', 'MSTRG.26780' => 'ama', 'MSTRG.4023' => 'ama', 'MSTRG.5655' => 'ama', 'MSTRG.9992' => 'ama', 'Nitab4.5_0000043g0310' => 'nta', 'Nitab4.5_0000463g0080' => 'nta', 'Nitab4.5_0000705g0170' => 'nta', 'Nitab4.5_0001326g0060' => 'nta', 'Nitab4.5_0001628g0030' => 'nta', 'Nitab4.5_0002103g0110' => 'nta', 'Nitab4.5_0002946g0030' => 'nta', 'Nitab4.5_0004639g0030' => 'nta', 'Nn2g11149' => 'nnu', 'Nn2g13389' => 'nnu', 'Nn4g25326' => 'nnu', 'Nn4g26290' => 'nnu', 'Nn5g29865' => 'nnu', 'Oeu004163.1' => 'oeu', 'Oeu006901.1' => 'oeu', 'Oeu010096.1' => 'oeu', 'Oeu024340.1' => 'oeu', 'Oeu048369.1' => 'oeu', 'Os01g0973000' => 'osa', 'Os03g0273800' => 'osa', 'Os03g0701200' => 'osa', 'Os03g0834050' => 'osa', 'Os07g0634400' => 'osa', 'Peaxi162Scf00092g01414' => 'pax', 'Peaxi162Scf00165g00818' => 'pax', 'Peaxi162Scf00309g00516' => 'pax', 'Peaxi162Scf00774g00218' => 'pax', 'PGR004G1824' => 'pgr', 'PGR004G2606' => 'pgr', 'PGR031G2716' => 'pgr', 'PGR102G2460' => 'pgr', 'PGR142G2599' => 'pgr', 'PGSC0003DMG400000843' => 'stu', 'PGSC0003DMG400008829' => 'stu', 'PGSC0003DMG400030418' => 'stu', 'PGSC0003DMG400031834' => 'stu', 'PGSC0003DMG401028300' => 'stu', 'PGSC0003DMG402028300' => 'stu', 'Phvul.001G219300' => 'pvu', 'Phvul.007G056000' => 'pvu', 'Phvul.007G208000' => 'pvu', 'Phvul.008G119500' => 'pvu', 'Phvul.010G011200' => 'pvu', 'Phvul.010G014800' => 'pvu', 'Phvul.011G062900' => 'pvu', 'Phvul.L007043' => 'pvu', 'Potri.001G242300' => 'ptr', 'Potri.002G185300' => 'ptr', 'Potri.006G086900' => 'ptr', 'Potri.008G151700' => 'ptr', 'Potri.009G033500' => 'ptr', 'Potri.010G089300' => 'ptr', 'Potri.014G110800' => 'ptr', 'Pp3c27_8130' => 'ppa', 'Pp3c6_27410' => 'ppa', 'PRCOL_00001659' => 'pco', 'PRCOL_00001927' => 'pco', 'PRCOL_00003649' => 'pco', 'Prupe.1G011600' => 'ppe', 'Prupe.3G000800' => 'ppe', 'Prupe.3G001100' => 'ppe', 'Prupe.6G072700' => 'ppe', 'Prupe.6G072800' => 'ppe', 'Prupe.6G257300' => 'ppe', 'Prupe.8G033000' => 'ppe', 'Psat0s2633g0080' => 'psa', 'Psat0s3396g0080' => 'psa', 'Psat0s3396g0200' => 'psa', 'Psat3g139080' => 'psa', 'Psat5g285080' => 'psa', 'Psat6g157760' => 'psa', 'Psat6g208440' => 'psa', 'Psat7g215320' => 'psa', 'Psat7g215400' => 'psa', 'Psat7g235600' => 'psa', 'Psat7g235760' => 'psa', 'PSO063G4603' => 'pso', 'PSO210G0182' => 'pso', 'PSO210G0196' => 'pso', 'PSO339G0394' => 'pso', 'PSO339G4127' => 'pso', 'PSO513G0064' => 'pso', 'PSO761G0079' => 'pso', 'QL01p031003' => 'qlo', 'QL01p031078' => 'qlo', 'QL06p003004' => 'qlo', 'QL07p048731' => 'qlo', 'QL09p037427' => 'qlo', 'RcHm_v2.0_Chr3g0466361' => 'rch', 'RcHm_v2.0_Chr3g0485571' => 'rch', 'RcHm_v2.0_Chr4g0416551' => 'rch', 'RcHm_v2.0_Chr5g0065831' => 'rch', 'Rhsim01G0230500' => 'rsi', 'Rhsim05G0194000' => 'rsi', 'Rhsim08G0250400' => 'rsi', 'Sabra02G0131000' => 'sbr', 'Sabra06G0066300' => 'sbr', 'Sabra08G0115500' => 'sbr', 'Sabra09G0023900' => 'sbr', 'Sabra10G0054000' => 'sbr', 'Sabra14G0081500' => 'sbr', 'Sabra16G0147100' => 'sbr', 'SalBow2G2957' => 'sbo', 'SalBow4G3320' => 'sbo', 'SalBow8G1894' => 'sbo', 'Sc07g0007950' => 'sci', 'Sc12g0001360' => 'sci', 'Sc13g0004330' => 'sci', 'Sc20g0005010' => 'sci', 'Sed0000361' => 'sed', 'Sed0001706' => 'sed', 'Sed0002422' => 'sed', 'Sed0004029' => 'sed', 'Sed0004602' => 'sed', 'Sed0004943' => 'sed', 'Sed0008646' => 'sed', 'Sed0023313' => 'sed', 'Sed0024843' => 'sed', 'SEGI_00081' => 'sgi', 'SEGI_00947' => 'sgi', 'SEGI_04046' => 'sgi', 'SEGI_06880' => 'sgi', 'SEGI_09736' => 'sgi', 'SEGI_12741' => 'sgi', 'SEGI_14530' => 'sgi', 'SEGI_20705' => 'sgi', 'SEGI_26088' => 'sgi', 'SEGI_28323' => 'sgi', 'SEGI_33343' => 'sgi', 'SGA_v2.0_scaffold126G33775' => 'sas', 'SGA_v2.0_scaffold2G01337' => 'sas', 'SGA_v2.0_scaffold38G15006' => 'sas', 'SGA_v2.0_scaffold39G15264' => 'sas', 'SGA_v2.0_scaffold453G51880' => 'sas', 'SHI12696' => 'shi', 'SMO367G1096' => 'smo', 'Solyc01g068630.3' => 'sly', 'Solyc05g011880.3' => 'sly', 'Solyc06g076300.3' => 'sly', 'Solyc09g010940.4' => 'sly', 'Solyc09g075890.3' => 'sly', 'Sopen01g030560' => 'spe', 'Sopen05g006630' => 'spe', 'Sopen06g032720' => 'spe', 'Sopen09g005660' => 'spe', 'Sopen09g030690' => 'spe', 'Sp4g14540' => 'spa', 'Sp4g20030' => 'spa', 'Sp5g01320' => 'spa', 'Sp6g21170' => 'spa', 'Sp6g21180' => 'spa', 'Sp6g21190' => 'spa', 'Sp6g40220' => 'spa', 'TAR362G0122' => 'tar', 'TAR362G1338' => 'tar', 'TAR369G0590' => 'tar', 'TAR371G0824' => 'tar', 'TAR622G1429' => 'tar', 'TAR623G0734' => 'tar', 'TAR625G0441' => 'tar', 'TAR629G0976' => 'tar', 'TAR633G1195' => 'tar', 'TAR636G2660' => 'tar', 'THA.LOC104799440' => 'tha', 'THA.LOC104800966' => 'tha', 'THA.LOC104806559' => 'tha', 'THA.LOC104810765' => 'tha', 'THA.LOC104816266' => 'tha', 'THA.LOC104817419' => 'tha', 'THA.LOC104827021' => 'tha', 'Thecc.01G327400' => 'tca', 'Thecc.04G229200' => 'tca', 'Thecc.05G037400' => 'tca', 'Thecc.09G318600' => 'tca', 'Thecc.09G318700' => 'tca', 'Thhalv10006238m.g' => 'esa', 'Thhalv10014321m.g' => 'esa', 'Thhalv10014335m.g' => 'esa', 'Thhalv10015826m.g' => 'esa', 'Thhalv10017107m.g' => 'esa', 'Thhalv10017180m.g' => 'esa', 'Thhalv10029339m.g' => 'esa', 'TPR.G1699' => 'tpr', 'TPR.G23609' => 'tpr', 'TPR.G3081' => 'tpr', 'TPR.G40397' => 'tpr', 'TPR.G5522' => 'tpr', 'TPR.G5618' => 'tpr', 'TPR.G5626' => 'tpr', 'TWI09G1632' => 'twi', 'TWI23G1230' => 'twi', 'TWI53G1064' => 'twi', 'TWI59G0751' => 'twi', 'TWI74G0947' => 'twi', 'TWI77G0337' => 'twi', 'TWI79G1254' => 'twi', 'unitig_0.g2341' => 'ugi', 'unitig_26.g10006' => 'ugi', 'unitig_26.g10008' => 'ugi', 'unitig_26.g9192' => 'ugi', 'vmacro14547' => 'vma', 'vmacro15333' => 'vma', 'vmacro18743' => 'vma', 'vmacro20166' => 'vma', 'VMungo0331G0523' => 'vmu', 'VMungo0331G1202' => 'vmu', 'VMungo0720G1228' => 'vmu', 'VMungo0720G1514' => 'vmu', 'VMungo1080G0169' => 'vmu', 'VMungo1127G1475' => 'vmu', 'VMungo1383G1208' => 'vmu', 'VMungo1383G1698' => 'vmu', 'Zm00001eb012270' => 'zma', 'Zm00001eb054100' => 'zma', 'Zm00001eb063350' => 'zma', 'Zm00001eb328560' => 'zma', 'Zm00001eb342820' => 'zma', 'Zm00001eb362210' => 'zma', 'Zm00001eb397730' => 'zma', 'Zm00001eb399750' => 'zma' ) $gf_id = 'HOM05D000959' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000959' ) $data_identifier = 'HOM05D000959' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 5, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 5, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 10, 'mbi' => (int) 3, 'mco' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 2, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 3, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 11, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399750' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000959', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '622', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p07100' => 'bna', 'A03p11720' => 'bna', 'A05p08300' => 'bna', 'A05p13380' => 'bna', 'A09p54130' => 'bna', 'A10p16690' => 'bna', 'A10p16700' => 'bna', 'A10p33390' => 'bna', 'Aa31LG10G16020' => 'aar', 'Aa31LG1G11810' => 'aar', 'Aa31LG1G11830' => 'aar', 'Aa31LG1G22510' => 'aar', 'Aa31LG5G4890' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5793' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2310' => 'aag', 'Actinidia08499' => 'ach', 'Actinidia11262' => 'ach', 'Actinidia23926' => 'ach', 'Actinidia34420' => 'ach', 'Actinidia36970' => 'ach', 'Ah.02g111220' => 'amhyb', 'Ah.15g097750' => 'amhyb', 'AL4G27500' => 'aly', 'AL6G11470' => 'aly', 'AL8G35950' => 'aly', 'AL8G35960' => 'aly', 'AL8G35970' => 'aly', 'Aqoxy1G00912' => 'aox', 'Aqoxy2G02253' => 'aox', 'Aqoxy2G02411' => 'aox', 'Aqoxy5G00485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BZ66YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K8ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM4FUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6BF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HFV7XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25JBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0YNNV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MAKK6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P70IT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP2Z6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V61LZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YWP64R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3S9AI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7PGHH' => 'arhy', 'AT2G32150' => 'ath', 'AT3G62040' => 'ath', 'AT5G02230' => 'ath', 'AT5G59480' => 'ath', 'AT5G59490' => 'ath', 'ATR0332G060' => 'atr', 'ATR0559G190' => 'atr', 'ATR0693G294' => 'atr', 'Atru.chr3.3975' => 'acertr', 'Atru.chr3.3976' => 'acertr', 'Atru.chr3.3977' => 'acertr', 'Atru.chr4.2498' => 'acertr', 'Atru.chr5.838' => 'acertr', 'Atru.chr8.1990' => 'acertr', 'Atru.chr8.1991' => 'acertr', 'Atru.chr8.1992' => 'acertr', 'AUR62001759' => 'cqu', 'AUR62009545' => 'cqu', 'AUR62010474' => 'cqu', 'AUR62025820' => 'cqu', 'AUR62030422' => 'cqu', 'AUR62033605' => 'cqu', 'AUR62038615' => 'cqu', 'AUR62041347' => 'cqu', 'BcaB01g04574' => 'bca', 'BcaB02g09263' => 'bca', 'BcaB02g10453' => 'bca', 'BcaB05g22513' => 'bca', 'BcaB08g36253' => 'bca', 'BcaB08g36254' => 'bca', 'BcaC01g06519' => 'bca', 'BcaC02g11889' => 'bca', 'BcaC03g14010' => 'bca', 'BcaC03g18439' => 'bca', 'BcaC04g19765' => 'bca', 'BcaC09g48432' => 'bca', 'BcaNung07302' => 'bca', 'BolC2t06040H' => 'bol', 'BolC2t07346H' => 'bol', 'BolC3t13817H' => 'bol', 'BolC4t22625H' => 'bol', 'BolC4t23297H' => 'bol', 'BolC8t51278H' => 'bol', 'BolC9t58050H' => 'bol', 'BolC9t58051H' => 'bol', 'BolC9t60163H' => 'bol', 'BraA02t04712Z' => 'bra', 'BraA02t05791Z' => 'bra', 'BraA03t10483Z' => 'bra', 'BraA05t19795Z' => 'bra', 'BraA05t20276Z' => 'bra', 'BraA09t40827Z' => 'bra', 'BraA10t43750Z' => 'bra', 'BraA10t43751Z' => 'bra', 'BraA10t45370Z' => 'bra', 'C02p00400' => 'bna', 'C02p12460' => 'bna', 'C03p13680' => 'bna', 'C04p10270' => 'bna', 'C04p17500' => 'bna', 'C08p37010' => 'bna', 'C09p51880' => 'bna', 'C09p51890' => 'bna', 'C09p74300' => 'bna', 'CAN.G179.26' => 'can', 'CAN.G3384.1' => 'can', 'CAN.G394.68' => 'can', 'CAN.G907.13' => 'can', 'CANSAT11G0012' => 'cansat', 'CANSAT25G1586' => 'cansat', 'CANSAT35G0735' => 'cansat', 'CANSAT54G0556' => 'cansat', 'CANSAT64G0356' => 'cansat', 'CANSAT78G2042' => 'cansat', 'CARHR125920' => 'chi', 'CARHR131910' => 'chi', 'CARHR172390' => 'chi', 'CARHR211140' => 'chi', 'CARHR285850' => 'chi', 'CARHR285860' => 'chi', 'Carub.0004s1347' => 'cru', 'Carub.0004s1960' => 'cru', 'Carub.0005s2880' => 'cru', 'Carub.0006s0107' => 'cru', 'Carub.0008s2015' => 'cru', 'Carub.0008s2016' => 'cru', 'Carub.0008s2017' => 'cru', 'Ca_01315_v3' => 'car', 'Ca_05063_v3' => 'car', 'Ca_10231_v3' => 'car', 'Ca_10913_v3' => 'car', 'Ca_19156_v3' => 'car', 'Ca_23644_v3' => 'car', 'Ca_26735_v3' => 'car', 'Cc01_g13130' => 'ccan', 'Cc02_g21690' => 'ccan', 'Cc03_g03600' => 'ccan', 'Cc06_g02510' => 'ccan', 'CDE02G1265' => 'cde', 'CDE05G0415' => 'cde', 'CDE08G1082' => 'cde', 'Cfa005780' => 'cfa', 'Cfa011522' => 'cfa', 'Cfa011523' => 'cfa', 'Cfa015627' => 'cfa', 'Cfa017359' => 'cfa', 'Ciclev10005687m.g' => 'ccl', 'Ciclev10012173m.g' => 'ccl', 'Ciclev10021621m.g' => 'ccl', 'Ciclev10028968m.g' => 'ccl', 'Ciclev10029907m.g' => 'ccl', 'CiPaw.01G164800' => 'cil', 'CiPaw.07G083700' => 'cil', 'CiPaw.07G127000' => 'cil', 'CiPaw.07G136900' => 'cil', 'CiPaw.08G081700' => 'cil', 'CiPaw.09G194600' => 'cil', 'CiPaw.10G146500' => 'cil', 'CiPaw.13G091500' => 'cil', 'CiPaw.13G091600' => 'cil', 'ClCG00G003390' => 'cla', 'ClCG01G007220' => 'cla', 'ClCG03G001370' => 'cla', 'ClCG04G008100' => 'cla', 'ClCG06G006110' => 'cla', 'ClCG06G006130' => 'cla', 'ClCG10G021210' => 'cla', 'COL.COLO4_07648' => 'col', 'COL.COLO4_07650' => 'col', 'COL.COLO4_07651' => 'col', 'COL.COLO4_14780' => 'col', 'COL.COLO4_18546' => 'col', 'COL.COLO4_18547' => 'col', 'COL.COLO4_23103' => 'col', 'COL.COLO4_30419' => 'col', 'COL.COLO4_34232' => 'col', 'Cpa.g.sc169.20' => 'cpa', 'Cpa.g.sc57.45' => 'cpa', 'Cpa.g.sc58.124' => 'cpa', 'Cpa.g.sc58.125' => 'cpa', 'Cpa.g.sc81.118' => 'cpa', 'Cpa.g.sc81.119' => 'cpa', 'Cre12.g524700' => 'cre', 'CsaV3_1G034430' => 'csa', 'CsaV3_1G034440' => 'csa', 'CsaV3_1G034450' => 'csa', 'CsaV3_3G034830' => 'csa', 'CsaV3_4G025090' => 'csa', 'CsaV3_5G018660' => 'csa', 'CsaV3_6G038160' => 'csa', 'CSS0003447' => 'camsi', 'CSS0017840' => 'camsi', 'CSS0019260' => 'camsi', 'CSS0040375' => 'camsi', 'CSS0042533' => 'camsi', 'DCAR_005960' => 'dca', 'DCAR_012104' => 'dca', 'DCAR_012105' => 'dca', 'DCAR_012293' => 'dca', 'DCAR_015632' => 'dca', 'DCAR_024602' => 'dca', 'DCAR_028752' => 'dca', 'Dinv06261' => 'din', 'Dinv13982' => 'din', 'Dinv17029' => 'din', 'Dinv18463' => 'din', 'Dinv33181' => 'din', 'Dinv35585' => 'din', 'Dinv37161' => 'din', 'Dinv42977' => 'din', 'Dinv43122' => 'din', 'Dinv44517' => 'din', 'Duzib093G0256' => 'dzi', 'Duzib106G1254' => 'dzi', 'Duzib128G1789' => 'dzi', 'Duzib133G0633' => 'dzi', 'Duzib138G0510' => 'dzi', 'Duzib150G1084' => 'dzi', 'Duzib168G0488' => 'dzi', 'Duzib168G1523' => 'dzi', 'Duzib170G0133' => 'dzi', 'ECA234G1433' => 'eca', 'ECA236G1432' => 'eca', 'ECA236G2256' => 'eca', 'ECA236G2365' => 'eca', 'ECA236G4830' => 'eca', 'ECA248G1505' => 'eca', 'EL10Ac3g06431' => 'bvu', 'EL10Ac5g12577' => 'bvu', 'EL10Ac6g13533' => 'bvu', 'EL10Ac7g16045' => 'bvu', 'Eucgr.A01281' => 'egr', 'Eucgr.B02326' => 'egr', 'Eucgr.H03532' => 'egr', 'Eucgr.K00553' => 'egr', 'Eucgr.K03116' => 'egr', 'FAN02G3963' => 'fan', 'FAN05G0438' => 'fan', 'FAN09G2434' => 'fan', 'FAN12G3984' => 'fan', 'FAN14G0798' => 'fan', 'FAN17G0652' => 'fan', 'FAN19G1988' => 'fan', 'FAN22G0632' => 'fan', 'FAN23G0387' => 'fan', 'FAN26G1323' => 'fan', 'FAN28G0666' => 'fan', 'FvH4_1g26080' => 'fve', 'FvH4_3g36780' => 'fve', 'FvH4_4g15270' => 'fve', 'FvH4_6g13490' => 'fve', 'Glyma.01G098700' => 'gma', 'Glyma.03G065900' => 'gma', 'Glyma.03G073754' => 'gma', 'Glyma.03G073758' => 'gma', 'Glyma.03G083200' => 'gma', 'Glyma.03G225500' => 'gma', 'Glyma.05G037766' => 'gma', 'Glyma.07G133500' => 'gma', 'Glyma.10G139400' => 'gma', 'Glyma.10G248900' => 'gma', 'Glyma.11G137800' => 'gma', 'Glyma.12G061300' => 'gma', 'Glyma.13G337900' => 'gma', 'Glyma.15G036600' => 'gma', 'Glyma.18G182800' => 'gma', 'Glyma.19G222500' => 'gma', 'Glyma.20G144800' => 'gma', 'Gohir.A01G222000' => 'ghi', 'Gohir.A03G044000' => 'ghi', 'Gohir.A03G044100' => 'ghi', 'Gohir.A04G083100' => 'ghi', 'Gohir.A07G127200' => 'ghi', 'Gohir.A07G132400' => 'ghi', 'Gohir.A08G000700' => 'ghi', 'Gohir.A11G327300' => 'ghi', 'Gohir.D01G211500' => 'ghi', 'Gohir.D03G123400' => 'ghi', 'Gohir.D03G123500' => 'ghi', 'Gohir.D04G121800' => 'ghi', 'Gohir.D07G131500' => 'ghi', 'Gohir.D07G136600' => 'ghi', 'Gohir.D08G011600' => 'ghi', 'Gohir.D11G346200' => 'ghi', 'Gorai.001G142800' => 'gra', 'Gorai.001G148700' => 'gra', 'Gorai.002G257300' => 'gra', 'Gorai.003G130000' => 'gra', 'Gorai.003G130100' => 'gra', 'Gorai.004G005300' => 'gra', 'Gorai.007G376500' => 'gra', 'Gorai.012G104700' => 'gra', 'GSVIVG01017946001' => 'vvi', 'GSVIVG01024928001' => 'vvi', 'GSVIVG01028227001' => 'vvi', 'GSVIVG01034151001' => 'vvi', 'HanXRQChr05g0135031' => 'han', 'HanXRQChr05g0135041' => 'han', 'HanXRQChr05g0140021' => 'han', 'HanXRQChr06g0178981' => 'han', 'HanXRQChr07g0188251' => 'han', 'HanXRQChr08g0235311' => 'han', 'HanXRQChr09g0271011' => 'han', 'HanXRQChr10g0293321' => 'han', 'HanXRQChr13g0388171' => 'han', 'Haze_00916' => 'cav', 'Haze_05063' => 'cav', 'Haze_20814' => 'cav', 'Haze_24128' => 'cav', 'Hma1.2p1_0745F.1_g212010' => 'hma', 'Hma1.2p1_0757F.1_g213260' => 'hma', 'Hma1.2p1_0936F.1_g238840' => 'hma', 'Hma1.2p1_1735F.1_g299890' => 'hma', 'Hma1.2p1_1861F.1_g305685' => 'hma', 'HPP92_003397' => 'vpl', 'HPP92_012597' => 'vpl', 'HPP92_015520' => 'vpl', 'HPP92_015539' => 'vpl', 'HPP92_020373' => 'vpl', 'Hund04938' => 'sun', 'Hund10677' => 'sun', 'Hund11033' => 'sun', 'Hund12155' => 'sun', 'Lalb_Chr01g0022551' => 'lal', 'Lalb_Chr03g0042341' => 'lal', 'Lalb_Chr07g0192931' => 'lal', 'Lalb_Chr12g0209551' => 'lal', 'Lalb_Chr19g0125251' => 'lal', 'Lalb_Chr19g0137891' => 'lal', 'Lalb_Chr21g0304641' => 'lal', 'Lalb_Chr21g0309881' => 'lal', 'Lj1A5T12' => 'lonja', 'Lj1C148G10' => 'lonja', 'Lj2A93T83' => 'lonja', 'Lj3A738G68' => 'lonja', 'Lj3C966T1' => 'lonja', 'Lj3g0018958' => 'lja', 'Lj3g0021831' => 'lja', 'Lj3g0025443' => 'lja', 'Lj4g0026809' => 'lja', 'Lj5g0012558' => 'lja', 'Lj5g0021586' => 'lja', 'Lsat_1_v5_gn_5_156840' => 'lsa', 'Lsat_1_v5_gn_8_73460' => 'lsa', 'Lsat_1_v5_gn_8_73481' => 'lsa', 'Lsat_1_v5_gn_9_31601' => 'lsa', 'Lsat_1_v5_gn_9_77320' => 'lsa', 'Manes.01G171300' => 'mes', 'Manes.01G171400' => 'mes', 'Manes.01G236100' => 'mes', 'Manes.02G130500' => 'mes', 'Manes.02G130600' => 'mes', 'Manes.03G180200' => 'mes', 'Manes.05G007000' => 'mes', 'Manes.08G084400' => 'mes', 'Manes.09G092600' => 'mes', 'Manes.15G027900' => 'mes', 'MBI04_g40948_MAGBIO' => 'mbi', 'MBI14_g12123_MAGBIO' => 'mbi', 'MBI18_g28915_MAGBIO' => 'mbi', 'MCO09G053' => 'mco', 'MCO11G782' => 'mco', 'MCO15G215' => 'mco', 'MD03G1088500' => 'mdo', 'MD03G1088600' => 'mdo', 'MD04G1130800' => 'mdo', 'MD09G1291700' => 'mdo', 'MD11G1097500' => 'mdo', 'MD11G1097600' => 'mdo', 'MD12G1143900' => 'mdo', 'MD13G1191400' => 'mdo', 'MD16G1191500' => 'mdo', 'Medtr1g085570' => 'mtr', 'Medtr1g104610' => 'mtr', 'Medtr2g097520' => 'mtr', 'Medtr4g021800' => 'mtr', 'Medtr4g021825' => 'mtr', 'Medtr4g064270' => 'mtr', 'Medtr4g064380' => 'mtr', 'Medtr7g062150' => 'mtr', 'MELO3C003138.2' => 'cme', 'MELO3C005187.2' => 'cme', 'MELO3C009252.2' => 'cme', 'MELO3C014481.2' => 'cme', 'MELO3C020616.2' => 'cme', 'MELO3C020617.2' => 'cme', 'MELO3C020618.2' => 'cme', 'Migut.G00328' => 'egut', 'Migut.J00320' => 'egut', 'Migut.L01000' => 'egut', 'Migut.L01953' => 'egut', 'MSTRG.10253' => 'ama', 'MSTRG.19077' => 'ama', 'MSTRG.26780' => 'ama', 'MSTRG.4023' => 'ama', 'MSTRG.5655' => 'ama', 'MSTRG.9992' => 'ama', 'Nitab4.5_0000043g0310' => 'nta', 'Nitab4.5_0000463g0080' => 'nta', 'Nitab4.5_0000705g0170' => 'nta', 'Nitab4.5_0001326g0060' => 'nta', 'Nitab4.5_0001628g0030' => 'nta', 'Nitab4.5_0002103g0110' => 'nta', 'Nitab4.5_0002946g0030' => 'nta', 'Nitab4.5_0004639g0030' => 'nta', 'Nn2g11149' => 'nnu', 'Nn2g13389' => 'nnu', 'Nn4g25326' => 'nnu', 'Nn4g26290' => 'nnu', 'Nn5g29865' => 'nnu', 'Oeu004163.1' => 'oeu', 'Oeu006901.1' => 'oeu', 'Oeu010096.1' => 'oeu', 'Oeu024340.1' => 'oeu', 'Oeu048369.1' => 'oeu', 'Os01g0973000' => 'osa', 'Os03g0273800' => 'osa', 'Os03g0701200' => 'osa', 'Os03g0834050' => 'osa', 'Os07g0634400' => 'osa', 'Peaxi162Scf00092g01414' => 'pax', 'Peaxi162Scf00165g00818' => 'pax', 'Peaxi162Scf00309g00516' => 'pax', 'Peaxi162Scf00774g00218' => 'pax', 'PGR004G1824' => 'pgr', 'PGR004G2606' => 'pgr', 'PGR031G2716' => 'pgr', 'PGR102G2460' => 'pgr', 'PGR142G2599' => 'pgr', 'PGSC0003DMG400000843' => 'stu', 'PGSC0003DMG400008829' => 'stu', 'PGSC0003DMG400030418' => 'stu', 'PGSC0003DMG400031834' => 'stu', 'PGSC0003DMG401028300' => 'stu', 'PGSC0003DMG402028300' => 'stu', 'Phvul.001G219300' => 'pvu', 'Phvul.007G056000' => 'pvu', 'Phvul.007G208000' => 'pvu', 'Phvul.008G119500' => 'pvu', 'Phvul.010G011200' => 'pvu', 'Phvul.010G014800' => 'pvu', 'Phvul.011G062900' => 'pvu', 'Phvul.L007043' => 'pvu', 'Potri.001G242300' => 'ptr', 'Potri.002G185300' => 'ptr', 'Potri.006G086900' => 'ptr', 'Potri.008G151700' => 'ptr', 'Potri.009G033500' => 'ptr', 'Potri.010G089300' => 'ptr', 'Potri.014G110800' => 'ptr', 'Pp3c27_8130' => 'ppa', 'Pp3c6_27410' => 'ppa', 'PRCOL_00001659' => 'pco', 'PRCOL_00001927' => 'pco', 'PRCOL_00003649' => 'pco', 'Prupe.1G011600' => 'ppe', 'Prupe.3G000800' => 'ppe', 'Prupe.3G001100' => 'ppe', 'Prupe.6G072700' => 'ppe', 'Prupe.6G072800' => 'ppe', 'Prupe.6G257300' => 'ppe', 'Prupe.8G033000' => 'ppe', 'Psat0s2633g0080' => 'psa', 'Psat0s3396g0080' => 'psa', 'Psat0s3396g0200' => 'psa', 'Psat3g139080' => 'psa', 'Psat5g285080' => 'psa', 'Psat6g157760' => 'psa', 'Psat6g208440' => 'psa', 'Psat7g215320' => 'psa', 'Psat7g215400' => 'psa', 'Psat7g235600' => 'psa', 'Psat7g235760' => 'psa', 'PSO063G4603' => 'pso', 'PSO210G0182' => 'pso', 'PSO210G0196' => 'pso', 'PSO339G0394' => 'pso', 'PSO339G4127' => 'pso', 'PSO513G0064' => 'pso', 'PSO761G0079' => 'pso', 'QL01p031003' => 'qlo', 'QL01p031078' => 'qlo', 'QL06p003004' => 'qlo', 'QL07p048731' => 'qlo', 'QL09p037427' => 'qlo', 'RcHm_v2.0_Chr3g0466361' => 'rch', 'RcHm_v2.0_Chr3g0485571' => 'rch', 'RcHm_v2.0_Chr4g0416551' => 'rch', 'RcHm_v2.0_Chr5g0065831' => 'rch', 'Rhsim01G0230500' => 'rsi', 'Rhsim05G0194000' => 'rsi', 'Rhsim08G0250400' => 'rsi', 'Sabra02G0131000' => 'sbr', 'Sabra06G0066300' => 'sbr', 'Sabra08G0115500' => 'sbr', 'Sabra09G0023900' => 'sbr', 'Sabra10G0054000' => 'sbr', 'Sabra14G0081500' => 'sbr', 'Sabra16G0147100' => 'sbr', 'SalBow2G2957' => 'sbo', 'SalBow4G3320' => 'sbo', 'SalBow8G1894' => 'sbo', 'Sc07g0007950' => 'sci', 'Sc12g0001360' => 'sci', 'Sc13g0004330' => 'sci', 'Sc20g0005010' => 'sci', 'Sed0000361' => 'sed', 'Sed0001706' => 'sed', 'Sed0002422' => 'sed', 'Sed0004029' => 'sed', 'Sed0004602' => 'sed', 'Sed0004943' => 'sed', 'Sed0008646' => 'sed', 'Sed0023313' => 'sed', 'Sed0024843' => 'sed', 'SEGI_00081' => 'sgi', 'SEGI_00947' => 'sgi', 'SEGI_04046' => 'sgi', 'SEGI_06880' => 'sgi', 'SEGI_09736' => 'sgi', 'SEGI_12741' => 'sgi', 'SEGI_14530' => 'sgi', 'SEGI_20705' => 'sgi', 'SEGI_26088' => 'sgi', 'SEGI_28323' => 'sgi', 'SEGI_33343' => 'sgi', 'SGA_v2.0_scaffold126G33775' => 'sas', 'SGA_v2.0_scaffold2G01337' => 'sas', 'SGA_v2.0_scaffold38G15006' => 'sas', 'SGA_v2.0_scaffold39G15264' => 'sas', 'SGA_v2.0_scaffold453G51880' => 'sas', 'SHI12696' => 'shi', 'SMO367G1096' => 'smo', 'Solyc01g068630.3' => 'sly', 'Solyc05g011880.3' => 'sly', 'Solyc06g076300.3' => 'sly', 'Solyc09g010940.4' => 'sly', 'Solyc09g075890.3' => 'sly', 'Sopen01g030560' => 'spe', 'Sopen05g006630' => 'spe', 'Sopen06g032720' => 'spe', 'Sopen09g005660' => 'spe', 'Sopen09g030690' => 'spe', 'Sp4g14540' => 'spa', 'Sp4g20030' => 'spa', 'Sp5g01320' => 'spa', 'Sp6g21170' => 'spa', 'Sp6g21180' => 'spa', 'Sp6g21190' => 'spa', 'Sp6g40220' => 'spa', 'TAR362G0122' => 'tar', 'TAR362G1338' => 'tar', 'TAR369G0590' => 'tar', 'TAR371G0824' => 'tar', 'TAR622G1429' => 'tar', 'TAR623G0734' => 'tar', 'TAR625G0441' => 'tar', 'TAR629G0976' => 'tar', 'TAR633G1195' => 'tar', 'TAR636G2660' => 'tar', 'THA.LOC104799440' => 'tha', 'THA.LOC104800966' => 'tha', 'THA.LOC104806559' => 'tha', 'THA.LOC104810765' => 'tha', 'THA.LOC104816266' => 'tha', 'THA.LOC104817419' => 'tha', 'THA.LOC104827021' => 'tha', 'Thecc.01G327400' => 'tca', 'Thecc.04G229200' => 'tca', 'Thecc.05G037400' => 'tca', 'Thecc.09G318600' => 'tca', 'Thecc.09G318700' => 'tca', 'Thhalv10006238m.g' => 'esa', 'Thhalv10014321m.g' => 'esa', 'Thhalv10014335m.g' => 'esa', 'Thhalv10015826m.g' => 'esa', 'Thhalv10017107m.g' => 'esa', 'Thhalv10017180m.g' => 'esa', 'Thhalv10029339m.g' => 'esa', 'TPR.G1699' => 'tpr', 'TPR.G23609' => 'tpr', 'TPR.G3081' => 'tpr', 'TPR.G40397' => 'tpr', 'TPR.G5522' => 'tpr', 'TPR.G5618' => 'tpr', 'TPR.G5626' => 'tpr', 'TWI09G1632' => 'twi', 'TWI23G1230' => 'twi', 'TWI53G1064' => 'twi', 'TWI59G0751' => 'twi', 'TWI74G0947' => 'twi', 'TWI77G0337' => 'twi', 'TWI79G1254' => 'twi', 'unitig_0.g2341' => 'ugi', 'unitig_26.g10006' => 'ugi', 'unitig_26.g10008' => 'ugi', 'unitig_26.g9192' => 'ugi', 'vmacro14547' => 'vma', 'vmacro15333' => 'vma', 'vmacro18743' => 'vma', 'vmacro20166' => 'vma', 'VMungo0331G0523' => 'vmu', 'VMungo0331G1202' => 'vmu', 'VMungo0720G1228' => 'vmu', 'VMungo0720G1514' => 'vmu', 'VMungo1080G0169' => 'vmu', 'VMungo1127G1475' => 'vmu', 'VMungo1383G1208' => 'vmu', 'VMungo1383G1698' => 'vmu', 'Zm00001eb012270' => 'zma', 'Zm00001eb054100' => 'zma', 'Zm00001eb063350' => 'zma', 'Zm00001eb328560' => 'zma', 'Zm00001eb342820' => 'zma', 'Zm00001eb362210' => 'zma', 'Zm00001eb397730' => 'zma', 'Zm00001eb399750' => 'zma' ), 'gf_id' => 'HOM05D000959', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000959' ), 'data_identifier' => 'HOM05D000959', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000959', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '622', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p07100' => 'bna', 'A03p11720' => 'bna', 'A05p08300' => 'bna', 'A05p13380' => 'bna', 'A09p54130' => 'bna', 'A10p16690' => 'bna', 'A10p16700' => 'bna', 'A10p33390' => 'bna', 'Aa31LG10G16020' => 'aar', 'Aa31LG1G11810' => 'aar', 'Aa31LG1G11830' => 'aar', 'Aa31LG1G22510' => 'aar', 'Aa31LG5G4890' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5793' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2310' => 'aag', 'Actinidia08499' => 'ach', 'Actinidia11262' => 'ach', 'Actinidia23926' => 'ach', 'Actinidia34420' => 'ach', 'Actinidia36970' => 'ach', 'Ah.02g111220' => 'amhyb', 'Ah.15g097750' => 'amhyb', 'AL4G27500' => 'aly', 'AL6G11470' => 'aly', 'AL8G35950' => 'aly', 'AL8G35960' => 'aly', 'AL8G35970' => 'aly', 'Aqoxy1G00912' => 'aox', 'Aqoxy2G02253' => 'aox', 'Aqoxy2G02411' => 'aox', 'Aqoxy5G00485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BZ66YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K8ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM4FUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6BF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HFV7XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25JBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0YNNV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MAKK6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P70IT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP2Z6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V61LZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YWP64R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3S9AI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7PGHH' => 'arhy', 'AT2G32150' => 'ath', 'AT3G62040' => 'ath', 'AT5G02230' => 'ath', 'AT5G59480' => 'ath', 'AT5G59490' => 'ath', 'ATR0332G060' => 'atr', 'ATR0559G190' => 'atr', 'ATR0693G294' => 'atr', 'Atru.chr3.3975' => 'acertr', 'Atru.chr3.3976' => 'acertr', 'Atru.chr3.3977' => 'acertr', 'Atru.chr4.2498' => 'acertr', 'Atru.chr5.838' => 'acertr', 'Atru.chr8.1990' => 'acertr', 'Atru.chr8.1991' => 'acertr', 'Atru.chr8.1992' => 'acertr', 'AUR62001759' => 'cqu', 'AUR62009545' => 'cqu', 'AUR62010474' => 'cqu', 'AUR62025820' => 'cqu', 'AUR62030422' => 'cqu', 'AUR62033605' => 'cqu', 'AUR62038615' => 'cqu', 'AUR62041347' => 'cqu', 'BcaB01g04574' => 'bca', 'BcaB02g09263' => 'bca', 'BcaB02g10453' => 'bca', 'BcaB05g22513' => 'bca', 'BcaB08g36253' => 'bca', 'BcaB08g36254' => 'bca', 'BcaC01g06519' => 'bca', 'BcaC02g11889' => 'bca', 'BcaC03g14010' => 'bca', 'BcaC03g18439' => 'bca', 'BcaC04g19765' => 'bca', 'BcaC09g48432' => 'bca', 'BcaNung07302' => 'bca', 'BolC2t06040H' => 'bol', 'BolC2t07346H' => 'bol', 'BolC3t13817H' => 'bol', 'BolC4t22625H' => 'bol', 'BolC4t23297H' => 'bol', 'BolC8t51278H' => 'bol', 'BolC9t58050H' => 'bol', 'BolC9t58051H' => 'bol', 'BolC9t60163H' => 'bol', 'BraA02t04712Z' => 'bra', 'BraA02t05791Z' => 'bra', 'BraA03t10483Z' => 'bra', 'BraA05t19795Z' => 'bra', 'BraA05t20276Z' => 'bra', 'BraA09t40827Z' => 'bra', 'BraA10t43750Z' => 'bra', 'BraA10t43751Z' => 'bra', 'BraA10t45370Z' => 'bra', 'C02p00400' => 'bna', 'C02p12460' => 'bna', 'C03p13680' => 'bna', 'C04p10270' => 'bna', 'C04p17500' => 'bna', 'C08p37010' => 'bna', 'C09p51880' => 'bna', 'C09p51890' => 'bna', 'C09p74300' => 'bna', 'CAN.G179.26' => 'can', 'CAN.G3384.1' => 'can', 'CAN.G394.68' => 'can', 'CAN.G907.13' => 'can', 'CANSAT11G0012' => 'cansat', 'CANSAT25G1586' => 'cansat', 'CANSAT35G0735' => 'cansat', 'CANSAT54G0556' => 'cansat', 'CANSAT64G0356' => 'cansat', 'CANSAT78G2042' => 'cansat', 'CARHR125920' => 'chi', 'CARHR131910' => 'chi', 'CARHR172390' => 'chi', 'CARHR211140' => 'chi', 'CARHR285850' => 'chi', 'CARHR285860' => 'chi', 'Carub.0004s1347' => 'cru', 'Carub.0004s1960' => 'cru', 'Carub.0005s2880' => 'cru', 'Carub.0006s0107' => 'cru', 'Carub.0008s2015' => 'cru', 'Carub.0008s2016' => 'cru', 'Carub.0008s2017' => 'cru', 'Ca_01315_v3' => 'car', 'Ca_05063_v3' => 'car', 'Ca_10231_v3' => 'car', 'Ca_10913_v3' => 'car', 'Ca_19156_v3' => 'car', 'Ca_23644_v3' => 'car', 'Ca_26735_v3' => 'car', 'Cc01_g13130' => 'ccan', 'Cc02_g21690' => 'ccan', 'Cc03_g03600' => 'ccan', 'Cc06_g02510' => 'ccan', 'CDE02G1265' => 'cde', 'CDE05G0415' => 'cde', 'CDE08G1082' => 'cde', 'Cfa005780' => 'cfa', 'Cfa011522' => 'cfa', 'Cfa011523' => 'cfa', 'Cfa015627' => 'cfa', 'Cfa017359' => 'cfa', 'Ciclev10005687m.g' => 'ccl', 'Ciclev10012173m.g' => 'ccl', 'Ciclev10021621m.g' => 'ccl', 'Ciclev10028968m.g' => 'ccl', 'Ciclev10029907m.g' => 'ccl', 'CiPaw.01G164800' => 'cil', 'CiPaw.07G083700' => 'cil', 'CiPaw.07G127000' => 'cil', 'CiPaw.07G136900' => 'cil', 'CiPaw.08G081700' => 'cil', 'CiPaw.09G194600' => 'cil', 'CiPaw.10G146500' => 'cil', 'CiPaw.13G091500' => 'cil', 'CiPaw.13G091600' => 'cil', 'ClCG00G003390' => 'cla', 'ClCG01G007220' => 'cla', 'ClCG03G001370' => 'cla', 'ClCG04G008100' => 'cla', 'ClCG06G006110' => 'cla', 'ClCG06G006130' => 'cla', 'ClCG10G021210' => 'cla', 'COL.COLO4_07648' => 'col', 'COL.COLO4_07650' => 'col', 'COL.COLO4_07651' => 'col', 'COL.COLO4_14780' => 'col', 'COL.COLO4_18546' => 'col', 'COL.COLO4_18547' => 'col', 'COL.COLO4_23103' => 'col', 'COL.COLO4_30419' => 'col', 'COL.COLO4_34232' => 'col', 'Cpa.g.sc169.20' => 'cpa', 'Cpa.g.sc57.45' => 'cpa', 'Cpa.g.sc58.124' => 'cpa', 'Cpa.g.sc58.125' => 'cpa', 'Cpa.g.sc81.118' => 'cpa', 'Cpa.g.sc81.119' => 'cpa', 'Cre12.g524700' => 'cre', 'CsaV3_1G034430' => 'csa', 'CsaV3_1G034440' => 'csa', 'CsaV3_1G034450' => 'csa', 'CsaV3_3G034830' => 'csa', 'CsaV3_4G025090' => 'csa', 'CsaV3_5G018660' => 'csa', 'CsaV3_6G038160' => 'csa', 'CSS0003447' => 'camsi', 'CSS0017840' => 'camsi', 'CSS0019260' => 'camsi', 'CSS0040375' => 'camsi', 'CSS0042533' => 'camsi', 'DCAR_005960' => 'dca', 'DCAR_012104' => 'dca', 'DCAR_012105' => 'dca', 'DCAR_012293' => 'dca', 'DCAR_015632' => 'dca', 'DCAR_024602' => 'dca', 'DCAR_028752' => 'dca', 'Dinv06261' => 'din', 'Dinv13982' => 'din', 'Dinv17029' => 'din', 'Dinv18463' => 'din', 'Dinv33181' => 'din', 'Dinv35585' => 'din', 'Dinv37161' => 'din', 'Dinv42977' => 'din', 'Dinv43122' => 'din', 'Dinv44517' => 'din', 'Duzib093G0256' => 'dzi', 'Duzib106G1254' => 'dzi', 'Duzib128G1789' => 'dzi', 'Duzib133G0633' => 'dzi', 'Duzib138G0510' => 'dzi', 'Duzib150G1084' => 'dzi', 'Duzib168G0488' => 'dzi', 'Duzib168G1523' => 'dzi', 'Duzib170G0133' => 'dzi', 'ECA234G1433' => 'eca', 'ECA236G1432' => 'eca', 'ECA236G2256' => 'eca', 'ECA236G2365' => 'eca', 'ECA236G4830' => 'eca', 'ECA248G1505' => 'eca', 'EL10Ac3g06431' => 'bvu', 'EL10Ac5g12577' => 'bvu', 'EL10Ac6g13533' => 'bvu', 'EL10Ac7g16045' => 'bvu', 'Eucgr.A01281' => 'egr', 'Eucgr.B02326' => 'egr', 'Eucgr.H03532' => 'egr', 'Eucgr.K00553' => 'egr', 'Eucgr.K03116' => 'egr', 'FAN02G3963' => 'fan', 'FAN05G0438' => 'fan', 'FAN09G2434' => 'fan', 'FAN12G3984' => 'fan', 'FAN14G0798' => 'fan', 'FAN17G0652' => 'fan', 'FAN19G1988' => 'fan', 'FAN22G0632' => 'fan', 'FAN23G0387' => 'fan', 'FAN26G1323' => 'fan', 'FAN28G0666' => 'fan', 'FvH4_1g26080' => 'fve', 'FvH4_3g36780' => 'fve', 'FvH4_4g15270' => 'fve', 'FvH4_6g13490' => 'fve', 'Glyma.01G098700' => 'gma', 'Glyma.03G065900' => 'gma', 'Glyma.03G073754' => 'gma', 'Glyma.03G073758' => 'gma', 'Glyma.03G083200' => 'gma', 'Glyma.03G225500' => 'gma', 'Glyma.05G037766' => 'gma', 'Glyma.07G133500' => 'gma', 'Glyma.10G139400' => 'gma', 'Glyma.10G248900' => 'gma', 'Glyma.11G137800' => 'gma', 'Glyma.12G061300' => 'gma', 'Glyma.13G337900' => 'gma', 'Glyma.15G036600' => 'gma', 'Glyma.18G182800' => 'gma', 'Glyma.19G222500' => 'gma', 'Glyma.20G144800' => 'gma', 'Gohir.A01G222000' => 'ghi', 'Gohir.A03G044000' => 'ghi', 'Gohir.A03G044100' => 'ghi', 'Gohir.A04G083100' => 'ghi', 'Gohir.A07G127200' => 'ghi', 'Gohir.A07G132400' => 'ghi', 'Gohir.A08G000700' => 'ghi', 'Gohir.A11G327300' => 'ghi', 'Gohir.D01G211500' => 'ghi', 'Gohir.D03G123400' => 'ghi', 'Gohir.D03G123500' => 'ghi', 'Gohir.D04G121800' => 'ghi', 'Gohir.D07G131500' => 'ghi', 'Gohir.D07G136600' => 'ghi', 'Gohir.D08G011600' => 'ghi', 'Gohir.D11G346200' => 'ghi', 'Gorai.001G142800' => 'gra', 'Gorai.001G148700' => 'gra', 'Gorai.002G257300' => 'gra', 'Gorai.003G130000' => 'gra', 'Gorai.003G130100' => 'gra', 'Gorai.004G005300' => 'gra', 'Gorai.007G376500' => 'gra', 'Gorai.012G104700' => 'gra', 'GSVIVG01017946001' => 'vvi', 'GSVIVG01024928001' => 'vvi', 'GSVIVG01028227001' => 'vvi', 'GSVIVG01034151001' => 'vvi', 'HanXRQChr05g0135031' => 'han', 'HanXRQChr05g0135041' => 'han', 'HanXRQChr05g0140021' => 'han', 'HanXRQChr06g0178981' => 'han', 'HanXRQChr07g0188251' => 'han', 'HanXRQChr08g0235311' => 'han', 'HanXRQChr09g0271011' => 'han', 'HanXRQChr10g0293321' => 'han', 'HanXRQChr13g0388171' => 'han', 'Haze_00916' => 'cav', 'Haze_05063' => 'cav', 'Haze_20814' => 'cav', 'Haze_24128' => 'cav', 'Hma1.2p1_0745F.1_g212010' => 'hma', 'Hma1.2p1_0757F.1_g213260' => 'hma', 'Hma1.2p1_0936F.1_g238840' => 'hma', 'Hma1.2p1_1735F.1_g299890' => 'hma', 'Hma1.2p1_1861F.1_g305685' => 'hma', 'HPP92_003397' => 'vpl', 'HPP92_012597' => 'vpl', 'HPP92_015520' => 'vpl', 'HPP92_015539' => 'vpl', 'HPP92_020373' => 'vpl', 'Hund04938' => 'sun', 'Hund10677' => 'sun', 'Hund11033' => 'sun', 'Hund12155' => 'sun', 'Lalb_Chr01g0022551' => 'lal', 'Lalb_Chr03g0042341' => 'lal', 'Lalb_Chr07g0192931' => 'lal', 'Lalb_Chr12g0209551' => 'lal', 'Lalb_Chr19g0125251' => 'lal', 'Lalb_Chr19g0137891' => 'lal', 'Lalb_Chr21g0304641' => 'lal', 'Lalb_Chr21g0309881' => 'lal', 'Lj1A5T12' => 'lonja', 'Lj1C148G10' => 'lonja', 'Lj2A93T83' => 'lonja', 'Lj3A738G68' => 'lonja', 'Lj3C966T1' => 'lonja', 'Lj3g0018958' => 'lja', 'Lj3g0021831' => 'lja', 'Lj3g0025443' => 'lja', 'Lj4g0026809' => 'lja', 'Lj5g0012558' => 'lja', 'Lj5g0021586' => 'lja', 'Lsat_1_v5_gn_5_156840' => 'lsa', 'Lsat_1_v5_gn_8_73460' => 'lsa', 'Lsat_1_v5_gn_8_73481' => 'lsa', 'Lsat_1_v5_gn_9_31601' => 'lsa', 'Lsat_1_v5_gn_9_77320' => 'lsa', 'Manes.01G171300' => 'mes', 'Manes.01G171400' => 'mes', 'Manes.01G236100' => 'mes', 'Manes.02G130500' => 'mes', 'Manes.02G130600' => 'mes', 'Manes.03G180200' => 'mes', 'Manes.05G007000' => 'mes', 'Manes.08G084400' => 'mes', 'Manes.09G092600' => 'mes', 'Manes.15G027900' => 'mes', 'MBI04_g40948_MAGBIO' => 'mbi', 'MBI14_g12123_MAGBIO' => 'mbi', 'MBI18_g28915_MAGBIO' => 'mbi', 'MCO09G053' => 'mco', 'MCO11G782' => 'mco', 'MCO15G215' => 'mco', 'MD03G1088500' => 'mdo', 'MD03G1088600' => 'mdo', 'MD04G1130800' => 'mdo', 'MD09G1291700' => 'mdo', 'MD11G1097500' => 'mdo', 'MD11G1097600' => 'mdo', 'MD12G1143900' => 'mdo', 'MD13G1191400' => 'mdo', 'MD16G1191500' => 'mdo', 'Medtr1g085570' => 'mtr', 'Medtr1g104610' => 'mtr', 'Medtr2g097520' => 'mtr', 'Medtr4g021800' => 'mtr', 'Medtr4g021825' => 'mtr', 'Medtr4g064270' => 'mtr', 'Medtr4g064380' => 'mtr', 'Medtr7g062150' => 'mtr', 'MELO3C003138.2' => 'cme', 'MELO3C005187.2' => 'cme', 'MELO3C009252.2' => 'cme', 'MELO3C014481.2' => 'cme', 'MELO3C020616.2' => 'cme', 'MELO3C020617.2' => 'cme', 'MELO3C020618.2' => 'cme', 'Migut.G00328' => 'egut', 'Migut.J00320' => 'egut', 'Migut.L01000' => 'egut', 'Migut.L01953' => 'egut', 'MSTRG.10253' => 'ama', 'MSTRG.19077' => 'ama', 'MSTRG.26780' => 'ama', 'MSTRG.4023' => 'ama', 'MSTRG.5655' => 'ama', 'MSTRG.9992' => 'ama', 'Nitab4.5_0000043g0310' => 'nta', 'Nitab4.5_0000463g0080' => 'nta', 'Nitab4.5_0000705g0170' => 'nta', 'Nitab4.5_0001326g0060' => 'nta', 'Nitab4.5_0001628g0030' => 'nta', 'Nitab4.5_0002103g0110' => 'nta', 'Nitab4.5_0002946g0030' => 'nta', 'Nitab4.5_0004639g0030' => 'nta', 'Nn2g11149' => 'nnu', 'Nn2g13389' => 'nnu', 'Nn4g25326' => 'nnu', 'Nn4g26290' => 'nnu', 'Nn5g29865' => 'nnu', 'Oeu004163.1' => 'oeu', 'Oeu006901.1' => 'oeu', 'Oeu010096.1' => 'oeu', 'Oeu024340.1' => 'oeu', 'Oeu048369.1' => 'oeu', 'Os01g0973000' => 'osa', 'Os03g0273800' => 'osa', 'Os03g0701200' => 'osa', 'Os03g0834050' => 'osa', 'Os07g0634400' => 'osa', 'Peaxi162Scf00092g01414' => 'pax', 'Peaxi162Scf00165g00818' => 'pax', 'Peaxi162Scf00309g00516' => 'pax', 'Peaxi162Scf00774g00218' => 'pax', 'PGR004G1824' => 'pgr', 'PGR004G2606' => 'pgr', 'PGR031G2716' => 'pgr', 'PGR102G2460' => 'pgr', 'PGR142G2599' => 'pgr', 'PGSC0003DMG400000843' => 'stu', 'PGSC0003DMG400008829' => 'stu', 'PGSC0003DMG400030418' => 'stu', 'PGSC0003DMG400031834' => 'stu', 'PGSC0003DMG401028300' => 'stu', 'PGSC0003DMG402028300' => 'stu', 'Phvul.001G219300' => 'pvu', 'Phvul.007G056000' => 'pvu', 'Phvul.007G208000' => 'pvu', 'Phvul.008G119500' => 'pvu', 'Phvul.010G011200' => 'pvu', 'Phvul.010G014800' => 'pvu', 'Phvul.011G062900' => 'pvu', 'Phvul.L007043' => 'pvu', 'Potri.001G242300' => 'ptr', 'Potri.002G185300' => 'ptr', 'Potri.006G086900' => 'ptr', 'Potri.008G151700' => 'ptr', 'Potri.009G033500' => 'ptr', 'Potri.010G089300' => 'ptr', 'Potri.014G110800' => 'ptr', 'Pp3c27_8130' => 'ppa', 'Pp3c6_27410' => 'ppa', 'PRCOL_00001659' => 'pco', 'PRCOL_00001927' => 'pco', 'PRCOL_00003649' => 'pco', 'Prupe.1G011600' => 'ppe', 'Prupe.3G000800' => 'ppe', 'Prupe.3G001100' => 'ppe', 'Prupe.6G072700' => 'ppe', 'Prupe.6G072800' => 'ppe', 'Prupe.6G257300' => 'ppe', 'Prupe.8G033000' => 'ppe', 'Psat0s2633g0080' => 'psa', 'Psat0s3396g0080' => 'psa', 'Psat0s3396g0200' => 'psa', 'Psat3g139080' => 'psa', 'Psat5g285080' => 'psa', 'Psat6g157760' => 'psa', 'Psat6g208440' => 'psa', 'Psat7g215320' => 'psa', 'Psat7g215400' => 'psa', 'Psat7g235600' => 'psa', 'Psat7g235760' => 'psa', 'PSO063G4603' => 'pso', 'PSO210G0182' => 'pso', 'PSO210G0196' => 'pso', 'PSO339G0394' => 'pso', 'PSO339G4127' => 'pso', 'PSO513G0064' => 'pso', 'PSO761G0079' => 'pso', 'QL01p031003' => 'qlo', 'QL01p031078' => 'qlo', 'QL06p003004' => 'qlo', 'QL07p048731' => 'qlo', 'QL09p037427' => 'qlo', 'RcHm_v2.0_Chr3g0466361' => 'rch', 'RcHm_v2.0_Chr3g0485571' => 'rch', 'RcHm_v2.0_Chr4g0416551' => 'rch', 'RcHm_v2.0_Chr5g0065831' => 'rch', 'Rhsim01G0230500' => 'rsi', 'Rhsim05G0194000' => 'rsi', 'Rhsim08G0250400' => 'rsi', 'Sabra02G0131000' => 'sbr', 'Sabra06G0066300' => 'sbr', 'Sabra08G0115500' => 'sbr', 'Sabra09G0023900' => 'sbr', 'Sabra10G0054000' => 'sbr', 'Sabra14G0081500' => 'sbr', 'Sabra16G0147100' => 'sbr', 'SalBow2G2957' => 'sbo', 'SalBow4G3320' => 'sbo', 'SalBow8G1894' => 'sbo', 'Sc07g0007950' => 'sci', 'Sc12g0001360' => 'sci', 'Sc13g0004330' => 'sci', 'Sc20g0005010' => 'sci', 'Sed0000361' => 'sed', 'Sed0001706' => 'sed', 'Sed0002422' => 'sed', 'Sed0004029' => 'sed', 'Sed0004602' => 'sed', 'Sed0004943' => 'sed', 'Sed0008646' => 'sed', 'Sed0023313' => 'sed', 'Sed0024843' => 'sed', 'SEGI_00081' => 'sgi', 'SEGI_00947' => 'sgi', 'SEGI_04046' => 'sgi', 'SEGI_06880' => 'sgi', 'SEGI_09736' => 'sgi', 'SEGI_12741' => 'sgi', 'SEGI_14530' => 'sgi', 'SEGI_20705' => 'sgi', 'SEGI_26088' => 'sgi', 'SEGI_28323' => 'sgi', 'SEGI_33343' => 'sgi', 'SGA_v2.0_scaffold126G33775' => 'sas', 'SGA_v2.0_scaffold2G01337' => 'sas', 'SGA_v2.0_scaffold38G15006' => 'sas', 'SGA_v2.0_scaffold39G15264' => 'sas', 'SGA_v2.0_scaffold453G51880' => 'sas', 'SHI12696' => 'shi', 'SMO367G1096' => 'smo', 'Solyc01g068630.3' => 'sly', 'Solyc05g011880.3' => 'sly', 'Solyc06g076300.3' => 'sly', 'Solyc09g010940.4' => 'sly', 'Solyc09g075890.3' => 'sly', 'Sopen01g030560' => 'spe', 'Sopen05g006630' => 'spe', 'Sopen06g032720' => 'spe', 'Sopen09g005660' => 'spe', 'Sopen09g030690' => 'spe', 'Sp4g14540' => 'spa', 'Sp4g20030' => 'spa', 'Sp5g01320' => 'spa', 'Sp6g21170' => 'spa', 'Sp6g21180' => 'spa', 'Sp6g21190' => 'spa', 'Sp6g40220' => 'spa', 'TAR362G0122' => 'tar', 'TAR362G1338' => 'tar', 'TAR369G0590' => 'tar', 'TAR371G0824' => 'tar', 'TAR622G1429' => 'tar', 'TAR623G0734' => 'tar', 'TAR625G0441' => 'tar', 'TAR629G0976' => 'tar', 'TAR633G1195' => 'tar', 'TAR636G2660' => 'tar', 'THA.LOC104799440' => 'tha', 'THA.LOC104800966' => 'tha', 'THA.LOC104806559' => 'tha', 'THA.LOC104810765' => 'tha', 'THA.LOC104816266' => 'tha', 'THA.LOC104817419' => 'tha', 'THA.LOC104827021' => 'tha', 'Thecc.01G327400' => 'tca', 'Thecc.04G229200' => 'tca', 'Thecc.05G037400' => 'tca', 'Thecc.09G318600' => 'tca', 'Thecc.09G318700' => 'tca', 'Thhalv10006238m.g' => 'esa', 'Thhalv10014321m.g' => 'esa', 'Thhalv10014335m.g' => 'esa', 'Thhalv10015826m.g' => 'esa', 'Thhalv10017107m.g' => 'esa', 'Thhalv10017180m.g' => 'esa', 'Thhalv10029339m.g' => 'esa', 'TPR.G1699' => 'tpr', 'TPR.G23609' => 'tpr', 'TPR.G3081' => 'tpr', 'TPR.G40397' => 'tpr', 'TPR.G5522' => 'tpr', 'TPR.G5618' => 'tpr', 'TPR.G5626' => 'tpr', 'TWI09G1632' => 'twi', 'TWI23G1230' => 'twi', 'TWI53G1064' => 'twi', 'TWI59G0751' => 'twi', 'TWI74G0947' => 'twi', 'TWI77G0337' => 'twi', 'TWI79G1254' => 'twi', 'unitig_0.g2341' => 'ugi', 'unitig_26.g10006' => 'ugi', 'unitig_26.g10008' => 'ugi', 'unitig_26.g9192' => 'ugi', 'vmacro14547' => 'vma', 'vmacro15333' => 'vma', 'vmacro18743' => 'vma', 'vmacro20166' => 'vma', 'VMungo0331G0523' => 'vmu', 'VMungo0331G1202' => 'vmu', 'VMungo0720G1228' => 'vmu', 'VMungo0720G1514' => 'vmu', 'VMungo1080G0169' => 'vmu', 'VMungo1127G1475' => 'vmu', 'VMungo1383G1208' => 'vmu', 'VMungo1383G1698' => 'vmu', 'Zm00001eb012270' => 'zma', 'Zm00001eb054100' => 'zma', 'Zm00001eb063350' => 'zma', 'Zm00001eb328560' => 'zma', 'Zm00001eb342820' => 'zma', 'Zm00001eb362210' => 'zma', 'Zm00001eb397730' => 'zma', 'Zm00001eb399750' => 'zma' ) $gf_id = 'HOM05D000959' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000959' ) $data_identifier = 'HOM05D000959' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 5, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 5, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 10, 'mbi' => (int) 3, 'mco' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 2, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 3, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 11, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399750' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000959', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '622', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p07100' => 'bna', 'A03p11720' => 'bna', 'A05p08300' => 'bna', 'A05p13380' => 'bna', 'A09p54130' => 'bna', 'A10p16690' => 'bna', 'A10p16700' => 'bna', 'A10p33390' => 'bna', 'Aa31LG10G16020' => 'aar', 'Aa31LG1G11810' => 'aar', 'Aa31LG1G11830' => 'aar', 'Aa31LG1G22510' => 'aar', 'Aa31LG5G4890' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5793' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2310' => 'aag', 'Actinidia08499' => 'ach', 'Actinidia11262' => 'ach', 'Actinidia23926' => 'ach', 'Actinidia34420' => 'ach', 'Actinidia36970' => 'ach', 'Ah.02g111220' => 'amhyb', 'Ah.15g097750' => 'amhyb', 'AL4G27500' => 'aly', 'AL6G11470' => 'aly', 'AL8G35950' => 'aly', 'AL8G35960' => 'aly', 'AL8G35970' => 'aly', 'Aqoxy1G00912' => 'aox', 'Aqoxy2G02253' => 'aox', 'Aqoxy2G02411' => 'aox', 'Aqoxy5G00485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BZ66YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K8ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM4FUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6BF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HFV7XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25JBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0YNNV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MAKK6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P70IT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP2Z6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V61LZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YWP64R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3S9AI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7PGHH' => 'arhy', 'AT2G32150' => 'ath', 'AT3G62040' => 'ath', 'AT5G02230' => 'ath', 'AT5G59480' => 'ath', 'AT5G59490' => 'ath', 'ATR0332G060' => 'atr', 'ATR0559G190' => 'atr', 'ATR0693G294' => 'atr', 'Atru.chr3.3975' => 'acertr', 'Atru.chr3.3976' => 'acertr', 'Atru.chr3.3977' => 'acertr', 'Atru.chr4.2498' => 'acertr', 'Atru.chr5.838' => 'acertr', 'Atru.chr8.1990' => 'acertr', 'Atru.chr8.1991' => 'acertr', 'Atru.chr8.1992' => 'acertr', 'AUR62001759' => 'cqu', 'AUR62009545' => 'cqu', 'AUR62010474' => 'cqu', 'AUR62025820' => 'cqu', 'AUR62030422' => 'cqu', 'AUR62033605' => 'cqu', 'AUR62038615' => 'cqu', 'AUR62041347' => 'cqu', 'BcaB01g04574' => 'bca', 'BcaB02g09263' => 'bca', 'BcaB02g10453' => 'bca', 'BcaB05g22513' => 'bca', 'BcaB08g36253' => 'bca', 'BcaB08g36254' => 'bca', 'BcaC01g06519' => 'bca', 'BcaC02g11889' => 'bca', 'BcaC03g14010' => 'bca', 'BcaC03g18439' => 'bca', 'BcaC04g19765' => 'bca', 'BcaC09g48432' => 'bca', 'BcaNung07302' => 'bca', 'BolC2t06040H' => 'bol', 'BolC2t07346H' => 'bol', 'BolC3t13817H' => 'bol', 'BolC4t22625H' => 'bol', 'BolC4t23297H' => 'bol', 'BolC8t51278H' => 'bol', 'BolC9t58050H' => 'bol', 'BolC9t58051H' => 'bol', 'BolC9t60163H' => 'bol', 'BraA02t04712Z' => 'bra', 'BraA02t05791Z' => 'bra', 'BraA03t10483Z' => 'bra', 'BraA05t19795Z' => 'bra', 'BraA05t20276Z' => 'bra', 'BraA09t40827Z' => 'bra', 'BraA10t43750Z' => 'bra', 'BraA10t43751Z' => 'bra', 'BraA10t45370Z' => 'bra', 'C02p00400' => 'bna', 'C02p12460' => 'bna', 'C03p13680' => 'bna', 'C04p10270' => 'bna', 'C04p17500' => 'bna', 'C08p37010' => 'bna', 'C09p51880' => 'bna', 'C09p51890' => 'bna', 'C09p74300' => 'bna', 'CAN.G179.26' => 'can', 'CAN.G3384.1' => 'can', 'CAN.G394.68' => 'can', 'CAN.G907.13' => 'can', 'CANSAT11G0012' => 'cansat', 'CANSAT25G1586' => 'cansat', 'CANSAT35G0735' => 'cansat', 'CANSAT54G0556' => 'cansat', 'CANSAT64G0356' => 'cansat', 'CANSAT78G2042' => 'cansat', 'CARHR125920' => 'chi', 'CARHR131910' => 'chi', 'CARHR172390' => 'chi', 'CARHR211140' => 'chi', 'CARHR285850' => 'chi', 'CARHR285860' => 'chi', 'Carub.0004s1347' => 'cru', 'Carub.0004s1960' => 'cru', 'Carub.0005s2880' => 'cru', 'Carub.0006s0107' => 'cru', 'Carub.0008s2015' => 'cru', 'Carub.0008s2016' => 'cru', 'Carub.0008s2017' => 'cru', 'Ca_01315_v3' => 'car', 'Ca_05063_v3' => 'car', 'Ca_10231_v3' => 'car', 'Ca_10913_v3' => 'car', 'Ca_19156_v3' => 'car', 'Ca_23644_v3' => 'car', 'Ca_26735_v3' => 'car', 'Cc01_g13130' => 'ccan', 'Cc02_g21690' => 'ccan', 'Cc03_g03600' => 'ccan', 'Cc06_g02510' => 'ccan', 'CDE02G1265' => 'cde', 'CDE05G0415' => 'cde', 'CDE08G1082' => 'cde', 'Cfa005780' => 'cfa', 'Cfa011522' => 'cfa', 'Cfa011523' => 'cfa', 'Cfa015627' => 'cfa', 'Cfa017359' => 'cfa', 'Ciclev10005687m.g' => 'ccl', 'Ciclev10012173m.g' => 'ccl', 'Ciclev10021621m.g' => 'ccl', 'Ciclev10028968m.g' => 'ccl', 'Ciclev10029907m.g' => 'ccl', 'CiPaw.01G164800' => 'cil', 'CiPaw.07G083700' => 'cil', 'CiPaw.07G127000' => 'cil', 'CiPaw.07G136900' => 'cil', 'CiPaw.08G081700' => 'cil', 'CiPaw.09G194600' => 'cil', 'CiPaw.10G146500' => 'cil', 'CiPaw.13G091500' => 'cil', 'CiPaw.13G091600' => 'cil', 'ClCG00G003390' => 'cla', 'ClCG01G007220' => 'cla', 'ClCG03G001370' => 'cla', 'ClCG04G008100' => 'cla', 'ClCG06G006110' => 'cla', 'ClCG06G006130' => 'cla', 'ClCG10G021210' => 'cla', 'COL.COLO4_07648' => 'col', 'COL.COLO4_07650' => 'col', 'COL.COLO4_07651' => 'col', 'COL.COLO4_14780' => 'col', 'COL.COLO4_18546' => 'col', 'COL.COLO4_18547' => 'col', 'COL.COLO4_23103' => 'col', 'COL.COLO4_30419' => 'col', 'COL.COLO4_34232' => 'col', 'Cpa.g.sc169.20' => 'cpa', 'Cpa.g.sc57.45' => 'cpa', 'Cpa.g.sc58.124' => 'cpa', 'Cpa.g.sc58.125' => 'cpa', 'Cpa.g.sc81.118' => 'cpa', 'Cpa.g.sc81.119' => 'cpa', 'Cre12.g524700' => 'cre', 'CsaV3_1G034430' => 'csa', 'CsaV3_1G034440' => 'csa', 'CsaV3_1G034450' => 'csa', 'CsaV3_3G034830' => 'csa', 'CsaV3_4G025090' => 'csa', 'CsaV3_5G018660' => 'csa', 'CsaV3_6G038160' => 'csa', 'CSS0003447' => 'camsi', 'CSS0017840' => 'camsi', 'CSS0019260' => 'camsi', 'CSS0040375' => 'camsi', 'CSS0042533' => 'camsi', 'DCAR_005960' => 'dca', 'DCAR_012104' => 'dca', 'DCAR_012105' => 'dca', 'DCAR_012293' => 'dca', 'DCAR_015632' => 'dca', 'DCAR_024602' => 'dca', 'DCAR_028752' => 'dca', 'Dinv06261' => 'din', 'Dinv13982' => 'din', 'Dinv17029' => 'din', 'Dinv18463' => 'din', 'Dinv33181' => 'din', 'Dinv35585' => 'din', 'Dinv37161' => 'din', 'Dinv42977' => 'din', 'Dinv43122' => 'din', 'Dinv44517' => 'din', 'Duzib093G0256' => 'dzi', 'Duzib106G1254' => 'dzi', 'Duzib128G1789' => 'dzi', 'Duzib133G0633' => 'dzi', 'Duzib138G0510' => 'dzi', 'Duzib150G1084' => 'dzi', 'Duzib168G0488' => 'dzi', 'Duzib168G1523' => 'dzi', 'Duzib170G0133' => 'dzi', 'ECA234G1433' => 'eca', 'ECA236G1432' => 'eca', 'ECA236G2256' => 'eca', 'ECA236G2365' => 'eca', 'ECA236G4830' => 'eca', 'ECA248G1505' => 'eca', 'EL10Ac3g06431' => 'bvu', 'EL10Ac5g12577' => 'bvu', 'EL10Ac6g13533' => 'bvu', 'EL10Ac7g16045' => 'bvu', 'Eucgr.A01281' => 'egr', 'Eucgr.B02326' => 'egr', 'Eucgr.H03532' => 'egr', 'Eucgr.K00553' => 'egr', 'Eucgr.K03116' => 'egr', 'FAN02G3963' => 'fan', 'FAN05G0438' => 'fan', 'FAN09G2434' => 'fan', 'FAN12G3984' => 'fan', 'FAN14G0798' => 'fan', 'FAN17G0652' => 'fan', 'FAN19G1988' => 'fan', 'FAN22G0632' => 'fan', 'FAN23G0387' => 'fan', 'FAN26G1323' => 'fan', 'FAN28G0666' => 'fan', 'FvH4_1g26080' => 'fve', 'FvH4_3g36780' => 'fve', 'FvH4_4g15270' => 'fve', 'FvH4_6g13490' => 'fve', 'Glyma.01G098700' => 'gma', 'Glyma.03G065900' => 'gma', 'Glyma.03G073754' => 'gma', 'Glyma.03G073758' => 'gma', 'Glyma.03G083200' => 'gma', 'Glyma.03G225500' => 'gma', 'Glyma.05G037766' => 'gma', 'Glyma.07G133500' => 'gma', 'Glyma.10G139400' => 'gma', 'Glyma.10G248900' => 'gma', 'Glyma.11G137800' => 'gma', 'Glyma.12G061300' => 'gma', 'Glyma.13G337900' => 'gma', 'Glyma.15G036600' => 'gma', 'Glyma.18G182800' => 'gma', 'Glyma.19G222500' => 'gma', 'Glyma.20G144800' => 'gma', 'Gohir.A01G222000' => 'ghi', 'Gohir.A03G044000' => 'ghi', 'Gohir.A03G044100' => 'ghi', 'Gohir.A04G083100' => 'ghi', 'Gohir.A07G127200' => 'ghi', 'Gohir.A07G132400' => 'ghi', 'Gohir.A08G000700' => 'ghi', 'Gohir.A11G327300' => 'ghi', 'Gohir.D01G211500' => 'ghi', 'Gohir.D03G123400' => 'ghi', 'Gohir.D03G123500' => 'ghi', 'Gohir.D04G121800' => 'ghi', 'Gohir.D07G131500' => 'ghi', 'Gohir.D07G136600' => 'ghi', 'Gohir.D08G011600' => 'ghi', 'Gohir.D11G346200' => 'ghi', 'Gorai.001G142800' => 'gra', 'Gorai.001G148700' => 'gra', 'Gorai.002G257300' => 'gra', 'Gorai.003G130000' => 'gra', 'Gorai.003G130100' => 'gra', 'Gorai.004G005300' => 'gra', 'Gorai.007G376500' => 'gra', 'Gorai.012G104700' => 'gra', 'GSVIVG01017946001' => 'vvi', 'GSVIVG01024928001' => 'vvi', 'GSVIVG01028227001' => 'vvi', 'GSVIVG01034151001' => 'vvi', 'HanXRQChr05g0135031' => 'han', 'HanXRQChr05g0135041' => 'han', 'HanXRQChr05g0140021' => 'han', 'HanXRQChr06g0178981' => 'han', 'HanXRQChr07g0188251' => 'han', 'HanXRQChr08g0235311' => 'han', 'HanXRQChr09g0271011' => 'han', 'HanXRQChr10g0293321' => 'han', 'HanXRQChr13g0388171' => 'han', 'Haze_00916' => 'cav', 'Haze_05063' => 'cav', 'Haze_20814' => 'cav', 'Haze_24128' => 'cav', 'Hma1.2p1_0745F.1_g212010' => 'hma', 'Hma1.2p1_0757F.1_g213260' => 'hma', 'Hma1.2p1_0936F.1_g238840' => 'hma', 'Hma1.2p1_1735F.1_g299890' => 'hma', 'Hma1.2p1_1861F.1_g305685' => 'hma', 'HPP92_003397' => 'vpl', 'HPP92_012597' => 'vpl', 'HPP92_015520' => 'vpl', 'HPP92_015539' => 'vpl', 'HPP92_020373' => 'vpl', 'Hund04938' => 'sun', 'Hund10677' => 'sun', 'Hund11033' => 'sun', 'Hund12155' => 'sun', 'Lalb_Chr01g0022551' => 'lal', 'Lalb_Chr03g0042341' => 'lal', 'Lalb_Chr07g0192931' => 'lal', 'Lalb_Chr12g0209551' => 'lal', 'Lalb_Chr19g0125251' => 'lal', 'Lalb_Chr19g0137891' => 'lal', 'Lalb_Chr21g0304641' => 'lal', 'Lalb_Chr21g0309881' => 'lal', 'Lj1A5T12' => 'lonja', 'Lj1C148G10' => 'lonja', 'Lj2A93T83' => 'lonja', 'Lj3A738G68' => 'lonja', 'Lj3C966T1' => 'lonja', 'Lj3g0018958' => 'lja', 'Lj3g0021831' => 'lja', 'Lj3g0025443' => 'lja', 'Lj4g0026809' => 'lja', 'Lj5g0012558' => 'lja', 'Lj5g0021586' => 'lja', 'Lsat_1_v5_gn_5_156840' => 'lsa', 'Lsat_1_v5_gn_8_73460' => 'lsa', 'Lsat_1_v5_gn_8_73481' => 'lsa', 'Lsat_1_v5_gn_9_31601' => 'lsa', 'Lsat_1_v5_gn_9_77320' => 'lsa', 'Manes.01G171300' => 'mes', 'Manes.01G171400' => 'mes', 'Manes.01G236100' => 'mes', 'Manes.02G130500' => 'mes', 'Manes.02G130600' => 'mes', 'Manes.03G180200' => 'mes', 'Manes.05G007000' => 'mes', 'Manes.08G084400' => 'mes', 'Manes.09G092600' => 'mes', 'Manes.15G027900' => 'mes', 'MBI04_g40948_MAGBIO' => 'mbi', 'MBI14_g12123_MAGBIO' => 'mbi', 'MBI18_g28915_MAGBIO' => 'mbi', 'MCO09G053' => 'mco', 'MCO11G782' => 'mco', 'MCO15G215' => 'mco', 'MD03G1088500' => 'mdo', 'MD03G1088600' => 'mdo', 'MD04G1130800' => 'mdo', 'MD09G1291700' => 'mdo', 'MD11G1097500' => 'mdo', 'MD11G1097600' => 'mdo', 'MD12G1143900' => 'mdo', 'MD13G1191400' => 'mdo', 'MD16G1191500' => 'mdo', 'Medtr1g085570' => 'mtr', 'Medtr1g104610' => 'mtr', 'Medtr2g097520' => 'mtr', 'Medtr4g021800' => 'mtr', 'Medtr4g021825' => 'mtr', 'Medtr4g064270' => 'mtr', 'Medtr4g064380' => 'mtr', 'Medtr7g062150' => 'mtr', 'MELO3C003138.2' => 'cme', 'MELO3C005187.2' => 'cme', 'MELO3C009252.2' => 'cme', 'MELO3C014481.2' => 'cme', 'MELO3C020616.2' => 'cme', 'MELO3C020617.2' => 'cme', 'MELO3C020618.2' => 'cme', 'Migut.G00328' => 'egut', 'Migut.J00320' => 'egut', 'Migut.L01000' => 'egut', 'Migut.L01953' => 'egut', 'MSTRG.10253' => 'ama', 'MSTRG.19077' => 'ama', 'MSTRG.26780' => 'ama', 'MSTRG.4023' => 'ama', 'MSTRG.5655' => 'ama', 'MSTRG.9992' => 'ama', 'Nitab4.5_0000043g0310' => 'nta', 'Nitab4.5_0000463g0080' => 'nta', 'Nitab4.5_0000705g0170' => 'nta', 'Nitab4.5_0001326g0060' => 'nta', 'Nitab4.5_0001628g0030' => 'nta', 'Nitab4.5_0002103g0110' => 'nta', 'Nitab4.5_0002946g0030' => 'nta', 'Nitab4.5_0004639g0030' => 'nta', 'Nn2g11149' => 'nnu', 'Nn2g13389' => 'nnu', 'Nn4g25326' => 'nnu', 'Nn4g26290' => 'nnu', 'Nn5g29865' => 'nnu', 'Oeu004163.1' => 'oeu', 'Oeu006901.1' => 'oeu', 'Oeu010096.1' => 'oeu', 'Oeu024340.1' => 'oeu', 'Oeu048369.1' => 'oeu', 'Os01g0973000' => 'osa', 'Os03g0273800' => 'osa', 'Os03g0701200' => 'osa', 'Os03g0834050' => 'osa', 'Os07g0634400' => 'osa', 'Peaxi162Scf00092g01414' => 'pax', 'Peaxi162Scf00165g00818' => 'pax', 'Peaxi162Scf00309g00516' => 'pax', 'Peaxi162Scf00774g00218' => 'pax', 'PGR004G1824' => 'pgr', 'PGR004G2606' => 'pgr', 'PGR031G2716' => 'pgr', 'PGR102G2460' => 'pgr', 'PGR142G2599' => 'pgr', 'PGSC0003DMG400000843' => 'stu', 'PGSC0003DMG400008829' => 'stu', 'PGSC0003DMG400030418' => 'stu', 'PGSC0003DMG400031834' => 'stu', 'PGSC0003DMG401028300' => 'stu', 'PGSC0003DMG402028300' => 'stu', 'Phvul.001G219300' => 'pvu', 'Phvul.007G056000' => 'pvu', 'Phvul.007G208000' => 'pvu', 'Phvul.008G119500' => 'pvu', 'Phvul.010G011200' => 'pvu', 'Phvul.010G014800' => 'pvu', 'Phvul.011G062900' => 'pvu', 'Phvul.L007043' => 'pvu', 'Potri.001G242300' => 'ptr', 'Potri.002G185300' => 'ptr', 'Potri.006G086900' => 'ptr', 'Potri.008G151700' => 'ptr', 'Potri.009G033500' => 'ptr', 'Potri.010G089300' => 'ptr', 'Potri.014G110800' => 'ptr', 'Pp3c27_8130' => 'ppa', 'Pp3c6_27410' => 'ppa', 'PRCOL_00001659' => 'pco', 'PRCOL_00001927' => 'pco', 'PRCOL_00003649' => 'pco', 'Prupe.1G011600' => 'ppe', 'Prupe.3G000800' => 'ppe', 'Prupe.3G001100' => 'ppe', 'Prupe.6G072700' => 'ppe', 'Prupe.6G072800' => 'ppe', 'Prupe.6G257300' => 'ppe', 'Prupe.8G033000' => 'ppe', 'Psat0s2633g0080' => 'psa', 'Psat0s3396g0080' => 'psa', 'Psat0s3396g0200' => 'psa', 'Psat3g139080' => 'psa', 'Psat5g285080' => 'psa', 'Psat6g157760' => 'psa', 'Psat6g208440' => 'psa', 'Psat7g215320' => 'psa', 'Psat7g215400' => 'psa', 'Psat7g235600' => 'psa', 'Psat7g235760' => 'psa', 'PSO063G4603' => 'pso', 'PSO210G0182' => 'pso', 'PSO210G0196' => 'pso', 'PSO339G0394' => 'pso', 'PSO339G4127' => 'pso', 'PSO513G0064' => 'pso', 'PSO761G0079' => 'pso', 'QL01p031003' => 'qlo', 'QL01p031078' => 'qlo', 'QL06p003004' => 'qlo', 'QL07p048731' => 'qlo', 'QL09p037427' => 'qlo', 'RcHm_v2.0_Chr3g0466361' => 'rch', 'RcHm_v2.0_Chr3g0485571' => 'rch', 'RcHm_v2.0_Chr4g0416551' => 'rch', 'RcHm_v2.0_Chr5g0065831' => 'rch', 'Rhsim01G0230500' => 'rsi', 'Rhsim05G0194000' => 'rsi', 'Rhsim08G0250400' => 'rsi', 'Sabra02G0131000' => 'sbr', 'Sabra06G0066300' => 'sbr', 'Sabra08G0115500' => 'sbr', 'Sabra09G0023900' => 'sbr', 'Sabra10G0054000' => 'sbr', 'Sabra14G0081500' => 'sbr', 'Sabra16G0147100' => 'sbr', 'SalBow2G2957' => 'sbo', 'SalBow4G3320' => 'sbo', 'SalBow8G1894' => 'sbo', 'Sc07g0007950' => 'sci', 'Sc12g0001360' => 'sci', 'Sc13g0004330' => 'sci', 'Sc20g0005010' => 'sci', 'Sed0000361' => 'sed', 'Sed0001706' => 'sed', 'Sed0002422' => 'sed', 'Sed0004029' => 'sed', 'Sed0004602' => 'sed', 'Sed0004943' => 'sed', 'Sed0008646' => 'sed', 'Sed0023313' => 'sed', 'Sed0024843' => 'sed', 'SEGI_00081' => 'sgi', 'SEGI_00947' => 'sgi', 'SEGI_04046' => 'sgi', 'SEGI_06880' => 'sgi', 'SEGI_09736' => 'sgi', 'SEGI_12741' => 'sgi', 'SEGI_14530' => 'sgi', 'SEGI_20705' => 'sgi', 'SEGI_26088' => 'sgi', 'SEGI_28323' => 'sgi', 'SEGI_33343' => 'sgi', 'SGA_v2.0_scaffold126G33775' => 'sas', 'SGA_v2.0_scaffold2G01337' => 'sas', 'SGA_v2.0_scaffold38G15006' => 'sas', 'SGA_v2.0_scaffold39G15264' => 'sas', 'SGA_v2.0_scaffold453G51880' => 'sas', 'SHI12696' => 'shi', 'SMO367G1096' => 'smo', 'Solyc01g068630.3' => 'sly', 'Solyc05g011880.3' => 'sly', 'Solyc06g076300.3' => 'sly', 'Solyc09g010940.4' => 'sly', 'Solyc09g075890.3' => 'sly', 'Sopen01g030560' => 'spe', 'Sopen05g006630' => 'spe', 'Sopen06g032720' => 'spe', 'Sopen09g005660' => 'spe', 'Sopen09g030690' => 'spe', 'Sp4g14540' => 'spa', 'Sp4g20030' => 'spa', 'Sp5g01320' => 'spa', 'Sp6g21170' => 'spa', 'Sp6g21180' => 'spa', 'Sp6g21190' => 'spa', 'Sp6g40220' => 'spa', 'TAR362G0122' => 'tar', 'TAR362G1338' => 'tar', 'TAR369G0590' => 'tar', 'TAR371G0824' => 'tar', 'TAR622G1429' => 'tar', 'TAR623G0734' => 'tar', 'TAR625G0441' => 'tar', 'TAR629G0976' => 'tar', 'TAR633G1195' => 'tar', 'TAR636G2660' => 'tar', 'THA.LOC104799440' => 'tha', 'THA.LOC104800966' => 'tha', 'THA.LOC104806559' => 'tha', 'THA.LOC104810765' => 'tha', 'THA.LOC104816266' => 'tha', 'THA.LOC104817419' => 'tha', 'THA.LOC104827021' => 'tha', 'Thecc.01G327400' => 'tca', 'Thecc.04G229200' => 'tca', 'Thecc.05G037400' => 'tca', 'Thecc.09G318600' => 'tca', 'Thecc.09G318700' => 'tca', 'Thhalv10006238m.g' => 'esa', 'Thhalv10014321m.g' => 'esa', 'Thhalv10014335m.g' => 'esa', 'Thhalv10015826m.g' => 'esa', 'Thhalv10017107m.g' => 'esa', 'Thhalv10017180m.g' => 'esa', 'Thhalv10029339m.g' => 'esa', 'TPR.G1699' => 'tpr', 'TPR.G23609' => 'tpr', 'TPR.G3081' => 'tpr', 'TPR.G40397' => 'tpr', 'TPR.G5522' => 'tpr', 'TPR.G5618' => 'tpr', 'TPR.G5626' => 'tpr', 'TWI09G1632' => 'twi', 'TWI23G1230' => 'twi', 'TWI53G1064' => 'twi', 'TWI59G0751' => 'twi', 'TWI74G0947' => 'twi', 'TWI77G0337' => 'twi', 'TWI79G1254' => 'twi', 'unitig_0.g2341' => 'ugi', 'unitig_26.g10006' => 'ugi', 'unitig_26.g10008' => 'ugi', 'unitig_26.g9192' => 'ugi', 'vmacro14547' => 'vma', 'vmacro15333' => 'vma', 'vmacro18743' => 'vma', 'vmacro20166' => 'vma', 'VMungo0331G0523' => 'vmu', 'VMungo0331G1202' => 'vmu', 'VMungo0720G1228' => 'vmu', 'VMungo0720G1514' => 'vmu', 'VMungo1080G0169' => 'vmu', 'VMungo1127G1475' => 'vmu', 'VMungo1383G1208' => 'vmu', 'VMungo1383G1698' => 'vmu', 'Zm00001eb012270' => 'zma', 'Zm00001eb054100' => 'zma', 'Zm00001eb063350' => 'zma', 'Zm00001eb328560' => 'zma', 'Zm00001eb342820' => 'zma', 'Zm00001eb362210' => 'zma', 'Zm00001eb397730' => 'zma', 'Zm00001eb399750' => 'zma' ), 'gf_id' => 'HOM05D000959', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000959' ), 'data_identifier' => 'HOM05D000959', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000959', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '622', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p07100' => 'bna', 'A03p11720' => 'bna', 'A05p08300' => 'bna', 'A05p13380' => 'bna', 'A09p54130' => 'bna', 'A10p16690' => 'bna', 'A10p16700' => 'bna', 'A10p33390' => 'bna', 'Aa31LG10G16020' => 'aar', 'Aa31LG1G11810' => 'aar', 'Aa31LG1G11830' => 'aar', 'Aa31LG1G22510' => 'aar', 'Aa31LG5G4890' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5793' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2310' => 'aag', 'Actinidia08499' => 'ach', 'Actinidia11262' => 'ach', 'Actinidia23926' => 'ach', 'Actinidia34420' => 'ach', 'Actinidia36970' => 'ach', 'Ah.02g111220' => 'amhyb', 'Ah.15g097750' => 'amhyb', 'AL4G27500' => 'aly', 'AL6G11470' => 'aly', 'AL8G35950' => 'aly', 'AL8G35960' => 'aly', 'AL8G35970' => 'aly', 'Aqoxy1G00912' => 'aox', 'Aqoxy2G02253' => 'aox', 'Aqoxy2G02411' => 'aox', 'Aqoxy5G00485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BZ66YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K8ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM4FUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6BF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HFV7XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25JBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0YNNV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MAKK6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P70IT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP2Z6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V61LZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YWP64R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3S9AI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7PGHH' => 'arhy', 'AT2G32150' => 'ath', 'AT3G62040' => 'ath', 'AT5G02230' => 'ath', 'AT5G59480' => 'ath', 'AT5G59490' => 'ath', 'ATR0332G060' => 'atr', 'ATR0559G190' => 'atr', 'ATR0693G294' => 'atr', 'Atru.chr3.3975' => 'acertr', 'Atru.chr3.3976' => 'acertr', 'Atru.chr3.3977' => 'acertr', 'Atru.chr4.2498' => 'acertr', 'Atru.chr5.838' => 'acertr', 'Atru.chr8.1990' => 'acertr', 'Atru.chr8.1991' => 'acertr', 'Atru.chr8.1992' => 'acertr', 'AUR62001759' => 'cqu', 'AUR62009545' => 'cqu', 'AUR62010474' => 'cqu', 'AUR62025820' => 'cqu', 'AUR62030422' => 'cqu', 'AUR62033605' => 'cqu', 'AUR62038615' => 'cqu', 'AUR62041347' => 'cqu', 'BcaB01g04574' => 'bca', 'BcaB02g09263' => 'bca', 'BcaB02g10453' => 'bca', 'BcaB05g22513' => 'bca', 'BcaB08g36253' => 'bca', 'BcaB08g36254' => 'bca', 'BcaC01g06519' => 'bca', 'BcaC02g11889' => 'bca', 'BcaC03g14010' => 'bca', 'BcaC03g18439' => 'bca', 'BcaC04g19765' => 'bca', 'BcaC09g48432' => 'bca', 'BcaNung07302' => 'bca', 'BolC2t06040H' => 'bol', 'BolC2t07346H' => 'bol', 'BolC3t13817H' => 'bol', 'BolC4t22625H' => 'bol', 'BolC4t23297H' => 'bol', 'BolC8t51278H' => 'bol', 'BolC9t58050H' => 'bol', 'BolC9t58051H' => 'bol', 'BolC9t60163H' => 'bol', 'BraA02t04712Z' => 'bra', 'BraA02t05791Z' => 'bra', 'BraA03t10483Z' => 'bra', 'BraA05t19795Z' => 'bra', 'BraA05t20276Z' => 'bra', 'BraA09t40827Z' => 'bra', 'BraA10t43750Z' => 'bra', 'BraA10t43751Z' => 'bra', 'BraA10t45370Z' => 'bra', 'C02p00400' => 'bna', 'C02p12460' => 'bna', 'C03p13680' => 'bna', 'C04p10270' => 'bna', 'C04p17500' => 'bna', 'C08p37010' => 'bna', 'C09p51880' => 'bna', 'C09p51890' => 'bna', 'C09p74300' => 'bna', 'CAN.G179.26' => 'can', 'CAN.G3384.1' => 'can', 'CAN.G394.68' => 'can', 'CAN.G907.13' => 'can', 'CANSAT11G0012' => 'cansat', 'CANSAT25G1586' => 'cansat', 'CANSAT35G0735' => 'cansat', 'CANSAT54G0556' => 'cansat', 'CANSAT64G0356' => 'cansat', 'CANSAT78G2042' => 'cansat', 'CARHR125920' => 'chi', 'CARHR131910' => 'chi', 'CARHR172390' => 'chi', 'CARHR211140' => 'chi', 'CARHR285850' => 'chi', 'CARHR285860' => 'chi', 'Carub.0004s1347' => 'cru', 'Carub.0004s1960' => 'cru', 'Carub.0005s2880' => 'cru', 'Carub.0006s0107' => 'cru', 'Carub.0008s2015' => 'cru', 'Carub.0008s2016' => 'cru', 'Carub.0008s2017' => 'cru', 'Ca_01315_v3' => 'car', 'Ca_05063_v3' => 'car', 'Ca_10231_v3' => 'car', 'Ca_10913_v3' => 'car', 'Ca_19156_v3' => 'car', 'Ca_23644_v3' => 'car', 'Ca_26735_v3' => 'car', 'Cc01_g13130' => 'ccan', 'Cc02_g21690' => 'ccan', 'Cc03_g03600' => 'ccan', 'Cc06_g02510' => 'ccan', 'CDE02G1265' => 'cde', 'CDE05G0415' => 'cde', 'CDE08G1082' => 'cde', 'Cfa005780' => 'cfa', 'Cfa011522' => 'cfa', 'Cfa011523' => 'cfa', 'Cfa015627' => 'cfa', 'Cfa017359' => 'cfa', 'Ciclev10005687m.g' => 'ccl', 'Ciclev10012173m.g' => 'ccl', 'Ciclev10021621m.g' => 'ccl', 'Ciclev10028968m.g' => 'ccl', 'Ciclev10029907m.g' => 'ccl', 'CiPaw.01G164800' => 'cil', 'CiPaw.07G083700' => 'cil', 'CiPaw.07G127000' => 'cil', 'CiPaw.07G136900' => 'cil', 'CiPaw.08G081700' => 'cil', 'CiPaw.09G194600' => 'cil', 'CiPaw.10G146500' => 'cil', 'CiPaw.13G091500' => 'cil', 'CiPaw.13G091600' => 'cil', 'ClCG00G003390' => 'cla', 'ClCG01G007220' => 'cla', 'ClCG03G001370' => 'cla', 'ClCG04G008100' => 'cla', 'ClCG06G006110' => 'cla', 'ClCG06G006130' => 'cla', 'ClCG10G021210' => 'cla', 'COL.COLO4_07648' => 'col', 'COL.COLO4_07650' => 'col', 'COL.COLO4_07651' => 'col', 'COL.COLO4_14780' => 'col', 'COL.COLO4_18546' => 'col', 'COL.COLO4_18547' => 'col', 'COL.COLO4_23103' => 'col', 'COL.COLO4_30419' => 'col', 'COL.COLO4_34232' => 'col', 'Cpa.g.sc169.20' => 'cpa', 'Cpa.g.sc57.45' => 'cpa', 'Cpa.g.sc58.124' => 'cpa', 'Cpa.g.sc58.125' => 'cpa', 'Cpa.g.sc81.118' => 'cpa', 'Cpa.g.sc81.119' => 'cpa', 'Cre12.g524700' => 'cre', 'CsaV3_1G034430' => 'csa', 'CsaV3_1G034440' => 'csa', 'CsaV3_1G034450' => 'csa', 'CsaV3_3G034830' => 'csa', 'CsaV3_4G025090' => 'csa', 'CsaV3_5G018660' => 'csa', 'CsaV3_6G038160' => 'csa', 'CSS0003447' => 'camsi', 'CSS0017840' => 'camsi', 'CSS0019260' => 'camsi', 'CSS0040375' => 'camsi', 'CSS0042533' => 'camsi', 'DCAR_005960' => 'dca', 'DCAR_012104' => 'dca', 'DCAR_012105' => 'dca', 'DCAR_012293' => 'dca', 'DCAR_015632' => 'dca', 'DCAR_024602' => 'dca', 'DCAR_028752' => 'dca', 'Dinv06261' => 'din', 'Dinv13982' => 'din', 'Dinv17029' => 'din', 'Dinv18463' => 'din', 'Dinv33181' => 'din', 'Dinv35585' => 'din', 'Dinv37161' => 'din', 'Dinv42977' => 'din', 'Dinv43122' => 'din', 'Dinv44517' => 'din', 'Duzib093G0256' => 'dzi', 'Duzib106G1254' => 'dzi', 'Duzib128G1789' => 'dzi', 'Duzib133G0633' => 'dzi', 'Duzib138G0510' => 'dzi', 'Duzib150G1084' => 'dzi', 'Duzib168G0488' => 'dzi', 'Duzib168G1523' => 'dzi', 'Duzib170G0133' => 'dzi', 'ECA234G1433' => 'eca', 'ECA236G1432' => 'eca', 'ECA236G2256' => 'eca', 'ECA236G2365' => 'eca', 'ECA236G4830' => 'eca', 'ECA248G1505' => 'eca', 'EL10Ac3g06431' => 'bvu', 'EL10Ac5g12577' => 'bvu', 'EL10Ac6g13533' => 'bvu', 'EL10Ac7g16045' => 'bvu', 'Eucgr.A01281' => 'egr', 'Eucgr.B02326' => 'egr', 'Eucgr.H03532' => 'egr', 'Eucgr.K00553' => 'egr', 'Eucgr.K03116' => 'egr', 'FAN02G3963' => 'fan', 'FAN05G0438' => 'fan', 'FAN09G2434' => 'fan', 'FAN12G3984' => 'fan', 'FAN14G0798' => 'fan', 'FAN17G0652' => 'fan', 'FAN19G1988' => 'fan', 'FAN22G0632' => 'fan', 'FAN23G0387' => 'fan', 'FAN26G1323' => 'fan', 'FAN28G0666' => 'fan', 'FvH4_1g26080' => 'fve', 'FvH4_3g36780' => 'fve', 'FvH4_4g15270' => 'fve', 'FvH4_6g13490' => 'fve', 'Glyma.01G098700' => 'gma', 'Glyma.03G065900' => 'gma', 'Glyma.03G073754' => 'gma', 'Glyma.03G073758' => 'gma', 'Glyma.03G083200' => 'gma', 'Glyma.03G225500' => 'gma', 'Glyma.05G037766' => 'gma', 'Glyma.07G133500' => 'gma', 'Glyma.10G139400' => 'gma', 'Glyma.10G248900' => 'gma', 'Glyma.11G137800' => 'gma', 'Glyma.12G061300' => 'gma', 'Glyma.13G337900' => 'gma', 'Glyma.15G036600' => 'gma', 'Glyma.18G182800' => 'gma', 'Glyma.19G222500' => 'gma', 'Glyma.20G144800' => 'gma', 'Gohir.A01G222000' => 'ghi', 'Gohir.A03G044000' => 'ghi', 'Gohir.A03G044100' => 'ghi', 'Gohir.A04G083100' => 'ghi', 'Gohir.A07G127200' => 'ghi', 'Gohir.A07G132400' => 'ghi', 'Gohir.A08G000700' => 'ghi', 'Gohir.A11G327300' => 'ghi', 'Gohir.D01G211500' => 'ghi', 'Gohir.D03G123400' => 'ghi', 'Gohir.D03G123500' => 'ghi', 'Gohir.D04G121800' => 'ghi', 'Gohir.D07G131500' => 'ghi', 'Gohir.D07G136600' => 'ghi', 'Gohir.D08G011600' => 'ghi', 'Gohir.D11G346200' => 'ghi', 'Gorai.001G142800' => 'gra', 'Gorai.001G148700' => 'gra', 'Gorai.002G257300' => 'gra', 'Gorai.003G130000' => 'gra', 'Gorai.003G130100' => 'gra', 'Gorai.004G005300' => 'gra', 'Gorai.007G376500' => 'gra', 'Gorai.012G104700' => 'gra', 'GSVIVG01017946001' => 'vvi', 'GSVIVG01024928001' => 'vvi', 'GSVIVG01028227001' => 'vvi', 'GSVIVG01034151001' => 'vvi', 'HanXRQChr05g0135031' => 'han', 'HanXRQChr05g0135041' => 'han', 'HanXRQChr05g0140021' => 'han', 'HanXRQChr06g0178981' => 'han', 'HanXRQChr07g0188251' => 'han', 'HanXRQChr08g0235311' => 'han', 'HanXRQChr09g0271011' => 'han', 'HanXRQChr10g0293321' => 'han', 'HanXRQChr13g0388171' => 'han', 'Haze_00916' => 'cav', 'Haze_05063' => 'cav', 'Haze_20814' => 'cav', 'Haze_24128' => 'cav', 'Hma1.2p1_0745F.1_g212010' => 'hma', 'Hma1.2p1_0757F.1_g213260' => 'hma', 'Hma1.2p1_0936F.1_g238840' => 'hma', 'Hma1.2p1_1735F.1_g299890' => 'hma', 'Hma1.2p1_1861F.1_g305685' => 'hma', 'HPP92_003397' => 'vpl', 'HPP92_012597' => 'vpl', 'HPP92_015520' => 'vpl', 'HPP92_015539' => 'vpl', 'HPP92_020373' => 'vpl', 'Hund04938' => 'sun', 'Hund10677' => 'sun', 'Hund11033' => 'sun', 'Hund12155' => 'sun', 'Lalb_Chr01g0022551' => 'lal', 'Lalb_Chr03g0042341' => 'lal', 'Lalb_Chr07g0192931' => 'lal', 'Lalb_Chr12g0209551' => 'lal', 'Lalb_Chr19g0125251' => 'lal', 'Lalb_Chr19g0137891' => 'lal', 'Lalb_Chr21g0304641' => 'lal', 'Lalb_Chr21g0309881' => 'lal', 'Lj1A5T12' => 'lonja', 'Lj1C148G10' => 'lonja', 'Lj2A93T83' => 'lonja', 'Lj3A738G68' => 'lonja', 'Lj3C966T1' => 'lonja', 'Lj3g0018958' => 'lja', 'Lj3g0021831' => 'lja', 'Lj3g0025443' => 'lja', 'Lj4g0026809' => 'lja', 'Lj5g0012558' => 'lja', 'Lj5g0021586' => 'lja', 'Lsat_1_v5_gn_5_156840' => 'lsa', 'Lsat_1_v5_gn_8_73460' => 'lsa', 'Lsat_1_v5_gn_8_73481' => 'lsa', 'Lsat_1_v5_gn_9_31601' => 'lsa', 'Lsat_1_v5_gn_9_77320' => 'lsa', 'Manes.01G171300' => 'mes', 'Manes.01G171400' => 'mes', 'Manes.01G236100' => 'mes', 'Manes.02G130500' => 'mes', 'Manes.02G130600' => 'mes', 'Manes.03G180200' => 'mes', 'Manes.05G007000' => 'mes', 'Manes.08G084400' => 'mes', 'Manes.09G092600' => 'mes', 'Manes.15G027900' => 'mes', 'MBI04_g40948_MAGBIO' => 'mbi', 'MBI14_g12123_MAGBIO' => 'mbi', 'MBI18_g28915_MAGBIO' => 'mbi', 'MCO09G053' => 'mco', 'MCO11G782' => 'mco', 'MCO15G215' => 'mco', 'MD03G1088500' => 'mdo', 'MD03G1088600' => 'mdo', 'MD04G1130800' => 'mdo', 'MD09G1291700' => 'mdo', 'MD11G1097500' => 'mdo', 'MD11G1097600' => 'mdo', 'MD12G1143900' => 'mdo', 'MD13G1191400' => 'mdo', 'MD16G1191500' => 'mdo', 'Medtr1g085570' => 'mtr', 'Medtr1g104610' => 'mtr', 'Medtr2g097520' => 'mtr', 'Medtr4g021800' => 'mtr', 'Medtr4g021825' => 'mtr', 'Medtr4g064270' => 'mtr', 'Medtr4g064380' => 'mtr', 'Medtr7g062150' => 'mtr', 'MELO3C003138.2' => 'cme', 'MELO3C005187.2' => 'cme', 'MELO3C009252.2' => 'cme', 'MELO3C014481.2' => 'cme', 'MELO3C020616.2' => 'cme', 'MELO3C020617.2' => 'cme', 'MELO3C020618.2' => 'cme', 'Migut.G00328' => 'egut', 'Migut.J00320' => 'egut', 'Migut.L01000' => 'egut', 'Migut.L01953' => 'egut', 'MSTRG.10253' => 'ama', 'MSTRG.19077' => 'ama', 'MSTRG.26780' => 'ama', 'MSTRG.4023' => 'ama', 'MSTRG.5655' => 'ama', 'MSTRG.9992' => 'ama', 'Nitab4.5_0000043g0310' => 'nta', 'Nitab4.5_0000463g0080' => 'nta', 'Nitab4.5_0000705g0170' => 'nta', 'Nitab4.5_0001326g0060' => 'nta', 'Nitab4.5_0001628g0030' => 'nta', 'Nitab4.5_0002103g0110' => 'nta', 'Nitab4.5_0002946g0030' => 'nta', 'Nitab4.5_0004639g0030' => 'nta', 'Nn2g11149' => 'nnu', 'Nn2g13389' => 'nnu', 'Nn4g25326' => 'nnu', 'Nn4g26290' => 'nnu', 'Nn5g29865' => 'nnu', 'Oeu004163.1' => 'oeu', 'Oeu006901.1' => 'oeu', 'Oeu010096.1' => 'oeu', 'Oeu024340.1' => 'oeu', 'Oeu048369.1' => 'oeu', 'Os01g0973000' => 'osa', 'Os03g0273800' => 'osa', 'Os03g0701200' => 'osa', 'Os03g0834050' => 'osa', 'Os07g0634400' => 'osa', 'Peaxi162Scf00092g01414' => 'pax', 'Peaxi162Scf00165g00818' => 'pax', 'Peaxi162Scf00309g00516' => 'pax', 'Peaxi162Scf00774g00218' => 'pax', 'PGR004G1824' => 'pgr', 'PGR004G2606' => 'pgr', 'PGR031G2716' => 'pgr', 'PGR102G2460' => 'pgr', 'PGR142G2599' => 'pgr', 'PGSC0003DMG400000843' => 'stu', 'PGSC0003DMG400008829' => 'stu', 'PGSC0003DMG400030418' => 'stu', 'PGSC0003DMG400031834' => 'stu', 'PGSC0003DMG401028300' => 'stu', 'PGSC0003DMG402028300' => 'stu', 'Phvul.001G219300' => 'pvu', 'Phvul.007G056000' => 'pvu', 'Phvul.007G208000' => 'pvu', 'Phvul.008G119500' => 'pvu', 'Phvul.010G011200' => 'pvu', 'Phvul.010G014800' => 'pvu', 'Phvul.011G062900' => 'pvu', 'Phvul.L007043' => 'pvu', 'Potri.001G242300' => 'ptr', 'Potri.002G185300' => 'ptr', 'Potri.006G086900' => 'ptr', 'Potri.008G151700' => 'ptr', 'Potri.009G033500' => 'ptr', 'Potri.010G089300' => 'ptr', 'Potri.014G110800' => 'ptr', 'Pp3c27_8130' => 'ppa', 'Pp3c6_27410' => 'ppa', 'PRCOL_00001659' => 'pco', 'PRCOL_00001927' => 'pco', 'PRCOL_00003649' => 'pco', 'Prupe.1G011600' => 'ppe', 'Prupe.3G000800' => 'ppe', 'Prupe.3G001100' => 'ppe', 'Prupe.6G072700' => 'ppe', 'Prupe.6G072800' => 'ppe', 'Prupe.6G257300' => 'ppe', 'Prupe.8G033000' => 'ppe', 'Psat0s2633g0080' => 'psa', 'Psat0s3396g0080' => 'psa', 'Psat0s3396g0200' => 'psa', 'Psat3g139080' => 'psa', 'Psat5g285080' => 'psa', 'Psat6g157760' => 'psa', 'Psat6g208440' => 'psa', 'Psat7g215320' => 'psa', 'Psat7g215400' => 'psa', 'Psat7g235600' => 'psa', 'Psat7g235760' => 'psa', 'PSO063G4603' => 'pso', 'PSO210G0182' => 'pso', 'PSO210G0196' => 'pso', 'PSO339G0394' => 'pso', 'PSO339G4127' => 'pso', 'PSO513G0064' => 'pso', 'PSO761G0079' => 'pso', 'QL01p031003' => 'qlo', 'QL01p031078' => 'qlo', 'QL06p003004' => 'qlo', 'QL07p048731' => 'qlo', 'QL09p037427' => 'qlo', 'RcHm_v2.0_Chr3g0466361' => 'rch', 'RcHm_v2.0_Chr3g0485571' => 'rch', 'RcHm_v2.0_Chr4g0416551' => 'rch', 'RcHm_v2.0_Chr5g0065831' => 'rch', 'Rhsim01G0230500' => 'rsi', 'Rhsim05G0194000' => 'rsi', 'Rhsim08G0250400' => 'rsi', 'Sabra02G0131000' => 'sbr', 'Sabra06G0066300' => 'sbr', 'Sabra08G0115500' => 'sbr', 'Sabra09G0023900' => 'sbr', 'Sabra10G0054000' => 'sbr', 'Sabra14G0081500' => 'sbr', 'Sabra16G0147100' => 'sbr', 'SalBow2G2957' => 'sbo', 'SalBow4G3320' => 'sbo', 'SalBow8G1894' => 'sbo', 'Sc07g0007950' => 'sci', 'Sc12g0001360' => 'sci', 'Sc13g0004330' => 'sci', 'Sc20g0005010' => 'sci', 'Sed0000361' => 'sed', 'Sed0001706' => 'sed', 'Sed0002422' => 'sed', 'Sed0004029' => 'sed', 'Sed0004602' => 'sed', 'Sed0004943' => 'sed', 'Sed0008646' => 'sed', 'Sed0023313' => 'sed', 'Sed0024843' => 'sed', 'SEGI_00081' => 'sgi', 'SEGI_00947' => 'sgi', 'SEGI_04046' => 'sgi', 'SEGI_06880' => 'sgi', 'SEGI_09736' => 'sgi', 'SEGI_12741' => 'sgi', 'SEGI_14530' => 'sgi', 'SEGI_20705' => 'sgi', 'SEGI_26088' => 'sgi', 'SEGI_28323' => 'sgi', 'SEGI_33343' => 'sgi', 'SGA_v2.0_scaffold126G33775' => 'sas', 'SGA_v2.0_scaffold2G01337' => 'sas', 'SGA_v2.0_scaffold38G15006' => 'sas', 'SGA_v2.0_scaffold39G15264' => 'sas', 'SGA_v2.0_scaffold453G51880' => 'sas', 'SHI12696' => 'shi', 'SMO367G1096' => 'smo', 'Solyc01g068630.3' => 'sly', 'Solyc05g011880.3' => 'sly', 'Solyc06g076300.3' => 'sly', 'Solyc09g010940.4' => 'sly', 'Solyc09g075890.3' => 'sly', 'Sopen01g030560' => 'spe', 'Sopen05g006630' => 'spe', 'Sopen06g032720' => 'spe', 'Sopen09g005660' => 'spe', 'Sopen09g030690' => 'spe', 'Sp4g14540' => 'spa', 'Sp4g20030' => 'spa', 'Sp5g01320' => 'spa', 'Sp6g21170' => 'spa', 'Sp6g21180' => 'spa', 'Sp6g21190' => 'spa', 'Sp6g40220' => 'spa', 'TAR362G0122' => 'tar', 'TAR362G1338' => 'tar', 'TAR369G0590' => 'tar', 'TAR371G0824' => 'tar', 'TAR622G1429' => 'tar', 'TAR623G0734' => 'tar', 'TAR625G0441' => 'tar', 'TAR629G0976' => 'tar', 'TAR633G1195' => 'tar', 'TAR636G2660' => 'tar', 'THA.LOC104799440' => 'tha', 'THA.LOC104800966' => 'tha', 'THA.LOC104806559' => 'tha', 'THA.LOC104810765' => 'tha', 'THA.LOC104816266' => 'tha', 'THA.LOC104817419' => 'tha', 'THA.LOC104827021' => 'tha', 'Thecc.01G327400' => 'tca', 'Thecc.04G229200' => 'tca', 'Thecc.05G037400' => 'tca', 'Thecc.09G318600' => 'tca', 'Thecc.09G318700' => 'tca', 'Thhalv10006238m.g' => 'esa', 'Thhalv10014321m.g' => 'esa', 'Thhalv10014335m.g' => 'esa', 'Thhalv10015826m.g' => 'esa', 'Thhalv10017107m.g' => 'esa', 'Thhalv10017180m.g' => 'esa', 'Thhalv10029339m.g' => 'esa', 'TPR.G1699' => 'tpr', 'TPR.G23609' => 'tpr', 'TPR.G3081' => 'tpr', 'TPR.G40397' => 'tpr', 'TPR.G5522' => 'tpr', 'TPR.G5618' => 'tpr', 'TPR.G5626' => 'tpr', 'TWI09G1632' => 'twi', 'TWI23G1230' => 'twi', 'TWI53G1064' => 'twi', 'TWI59G0751' => 'twi', 'TWI74G0947' => 'twi', 'TWI77G0337' => 'twi', 'TWI79G1254' => 'twi', 'unitig_0.g2341' => 'ugi', 'unitig_26.g10006' => 'ugi', 'unitig_26.g10008' => 'ugi', 'unitig_26.g9192' => 'ugi', 'vmacro14547' => 'vma', 'vmacro15333' => 'vma', 'vmacro18743' => 'vma', 'vmacro20166' => 'vma', 'VMungo0331G0523' => 'vmu', 'VMungo0331G1202' => 'vmu', 'VMungo0720G1228' => 'vmu', 'VMungo0720G1514' => 'vmu', 'VMungo1080G0169' => 'vmu', 'VMungo1127G1475' => 'vmu', 'VMungo1383G1208' => 'vmu', 'VMungo1383G1698' => 'vmu', 'Zm00001eb012270' => 'zma', 'Zm00001eb054100' => 'zma', 'Zm00001eb063350' => 'zma', 'Zm00001eb328560' => 'zma', 'Zm00001eb342820' => 'zma', 'Zm00001eb362210' => 'zma', 'Zm00001eb397730' => 'zma', 'Zm00001eb399750' => 'zma' ) $gf_id = 'HOM05D000959' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000959' ) $data_identifier = 'HOM05D000959' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 5, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 5, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 10, 'mbi' => (int) 3, 'mco' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 2, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 3, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 11, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399750' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000959', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '622', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p07100' => 'bna', 'A03p11720' => 'bna', 'A05p08300' => 'bna', 'A05p13380' => 'bna', 'A09p54130' => 'bna', 'A10p16690' => 'bna', 'A10p16700' => 'bna', 'A10p33390' => 'bna', 'Aa31LG10G16020' => 'aar', 'Aa31LG1G11810' => 'aar', 'Aa31LG1G11830' => 'aar', 'Aa31LG1G22510' => 'aar', 'Aa31LG5G4890' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5793' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2310' => 'aag', 'Actinidia08499' => 'ach', 'Actinidia11262' => 'ach', 'Actinidia23926' => 'ach', 'Actinidia34420' => 'ach', 'Actinidia36970' => 'ach', 'Ah.02g111220' => 'amhyb', 'Ah.15g097750' => 'amhyb', 'AL4G27500' => 'aly', 'AL6G11470' => 'aly', 'AL8G35950' => 'aly', 'AL8G35960' => 'aly', 'AL8G35970' => 'aly', 'Aqoxy1G00912' => 'aox', 'Aqoxy2G02253' => 'aox', 'Aqoxy2G02411' => 'aox', 'Aqoxy5G00485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BZ66YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K8ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM4FUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6BF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HFV7XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25JBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0YNNV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MAKK6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P70IT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP2Z6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V61LZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YWP64R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3S9AI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7PGHH' => 'arhy', 'AT2G32150' => 'ath', 'AT3G62040' => 'ath', 'AT5G02230' => 'ath', 'AT5G59480' => 'ath', 'AT5G59490' => 'ath', 'ATR0332G060' => 'atr', 'ATR0559G190' => 'atr', 'ATR0693G294' => 'atr', 'Atru.chr3.3975' => 'acertr', 'Atru.chr3.3976' => 'acertr', 'Atru.chr3.3977' => 'acertr', 'Atru.chr4.2498' => 'acertr', 'Atru.chr5.838' => 'acertr', 'Atru.chr8.1990' => 'acertr', 'Atru.chr8.1991' => 'acertr', 'Atru.chr8.1992' => 'acertr', 'AUR62001759' => 'cqu', 'AUR62009545' => 'cqu', 'AUR62010474' => 'cqu', 'AUR62025820' => 'cqu', 'AUR62030422' => 'cqu', 'AUR62033605' => 'cqu', 'AUR62038615' => 'cqu', 'AUR62041347' => 'cqu', 'BcaB01g04574' => 'bca', 'BcaB02g09263' => 'bca', 'BcaB02g10453' => 'bca', 'BcaB05g22513' => 'bca', 'BcaB08g36253' => 'bca', 'BcaB08g36254' => 'bca', 'BcaC01g06519' => 'bca', 'BcaC02g11889' => 'bca', 'BcaC03g14010' => 'bca', 'BcaC03g18439' => 'bca', 'BcaC04g19765' => 'bca', 'BcaC09g48432' => 'bca', 'BcaNung07302' => 'bca', 'BolC2t06040H' => 'bol', 'BolC2t07346H' => 'bol', 'BolC3t13817H' => 'bol', 'BolC4t22625H' => 'bol', 'BolC4t23297H' => 'bol', 'BolC8t51278H' => 'bol', 'BolC9t58050H' => 'bol', 'BolC9t58051H' => 'bol', 'BolC9t60163H' => 'bol', 'BraA02t04712Z' => 'bra', 'BraA02t05791Z' => 'bra', 'BraA03t10483Z' => 'bra', 'BraA05t19795Z' => 'bra', 'BraA05t20276Z' => 'bra', 'BraA09t40827Z' => 'bra', 'BraA10t43750Z' => 'bra', 'BraA10t43751Z' => 'bra', 'BraA10t45370Z' => 'bra', 'C02p00400' => 'bna', 'C02p12460' => 'bna', 'C03p13680' => 'bna', 'C04p10270' => 'bna', 'C04p17500' => 'bna', 'C08p37010' => 'bna', 'C09p51880' => 'bna', 'C09p51890' => 'bna', 'C09p74300' => 'bna', 'CAN.G179.26' => 'can', 'CAN.G3384.1' => 'can', 'CAN.G394.68' => 'can', 'CAN.G907.13' => 'can', 'CANSAT11G0012' => 'cansat', 'CANSAT25G1586' => 'cansat', 'CANSAT35G0735' => 'cansat', 'CANSAT54G0556' => 'cansat', 'CANSAT64G0356' => 'cansat', 'CANSAT78G2042' => 'cansat', 'CARHR125920' => 'chi', 'CARHR131910' => 'chi', 'CARHR172390' => 'chi', 'CARHR211140' => 'chi', 'CARHR285850' => 'chi', 'CARHR285860' => 'chi', 'Carub.0004s1347' => 'cru', 'Carub.0004s1960' => 'cru', 'Carub.0005s2880' => 'cru', 'Carub.0006s0107' => 'cru', 'Carub.0008s2015' => 'cru', 'Carub.0008s2016' => 'cru', 'Carub.0008s2017' => 'cru', 'Ca_01315_v3' => 'car', 'Ca_05063_v3' => 'car', 'Ca_10231_v3' => 'car', 'Ca_10913_v3' => 'car', 'Ca_19156_v3' => 'car', 'Ca_23644_v3' => 'car', 'Ca_26735_v3' => 'car', 'Cc01_g13130' => 'ccan', 'Cc02_g21690' => 'ccan', 'Cc03_g03600' => 'ccan', 'Cc06_g02510' => 'ccan', 'CDE02G1265' => 'cde', 'CDE05G0415' => 'cde', 'CDE08G1082' => 'cde', 'Cfa005780' => 'cfa', 'Cfa011522' => 'cfa', 'Cfa011523' => 'cfa', 'Cfa015627' => 'cfa', 'Cfa017359' => 'cfa', 'Ciclev10005687m.g' => 'ccl', 'Ciclev10012173m.g' => 'ccl', 'Ciclev10021621m.g' => 'ccl', 'Ciclev10028968m.g' => 'ccl', 'Ciclev10029907m.g' => 'ccl', 'CiPaw.01G164800' => 'cil', 'CiPaw.07G083700' => 'cil', 'CiPaw.07G127000' => 'cil', 'CiPaw.07G136900' => 'cil', 'CiPaw.08G081700' => 'cil', 'CiPaw.09G194600' => 'cil', 'CiPaw.10G146500' => 'cil', 'CiPaw.13G091500' => 'cil', 'CiPaw.13G091600' => 'cil', 'ClCG00G003390' => 'cla', 'ClCG01G007220' => 'cla', 'ClCG03G001370' => 'cla', 'ClCG04G008100' => 'cla', 'ClCG06G006110' => 'cla', 'ClCG06G006130' => 'cla', 'ClCG10G021210' => 'cla', 'COL.COLO4_07648' => 'col', 'COL.COLO4_07650' => 'col', 'COL.COLO4_07651' => 'col', 'COL.COLO4_14780' => 'col', 'COL.COLO4_18546' => 'col', 'COL.COLO4_18547' => 'col', 'COL.COLO4_23103' => 'col', 'COL.COLO4_30419' => 'col', 'COL.COLO4_34232' => 'col', 'Cpa.g.sc169.20' => 'cpa', 'Cpa.g.sc57.45' => 'cpa', 'Cpa.g.sc58.124' => 'cpa', 'Cpa.g.sc58.125' => 'cpa', 'Cpa.g.sc81.118' => 'cpa', 'Cpa.g.sc81.119' => 'cpa', 'Cre12.g524700' => 'cre', 'CsaV3_1G034430' => 'csa', 'CsaV3_1G034440' => 'csa', 'CsaV3_1G034450' => 'csa', 'CsaV3_3G034830' => 'csa', 'CsaV3_4G025090' => 'csa', 'CsaV3_5G018660' => 'csa', 'CsaV3_6G038160' => 'csa', 'CSS0003447' => 'camsi', 'CSS0017840' => 'camsi', 'CSS0019260' => 'camsi', 'CSS0040375' => 'camsi', 'CSS0042533' => 'camsi', 'DCAR_005960' => 'dca', 'DCAR_012104' => 'dca', 'DCAR_012105' => 'dca', 'DCAR_012293' => 'dca', 'DCAR_015632' => 'dca', 'DCAR_024602' => 'dca', 'DCAR_028752' => 'dca', 'Dinv06261' => 'din', 'Dinv13982' => 'din', 'Dinv17029' => 'din', 'Dinv18463' => 'din', 'Dinv33181' => 'din', 'Dinv35585' => 'din', 'Dinv37161' => 'din', 'Dinv42977' => 'din', 'Dinv43122' => 'din', 'Dinv44517' => 'din', 'Duzib093G0256' => 'dzi', 'Duzib106G1254' => 'dzi', 'Duzib128G1789' => 'dzi', 'Duzib133G0633' => 'dzi', 'Duzib138G0510' => 'dzi', 'Duzib150G1084' => 'dzi', 'Duzib168G0488' => 'dzi', 'Duzib168G1523' => 'dzi', 'Duzib170G0133' => 'dzi', 'ECA234G1433' => 'eca', 'ECA236G1432' => 'eca', 'ECA236G2256' => 'eca', 'ECA236G2365' => 'eca', 'ECA236G4830' => 'eca', 'ECA248G1505' => 'eca', 'EL10Ac3g06431' => 'bvu', 'EL10Ac5g12577' => 'bvu', 'EL10Ac6g13533' => 'bvu', 'EL10Ac7g16045' => 'bvu', 'Eucgr.A01281' => 'egr', 'Eucgr.B02326' => 'egr', 'Eucgr.H03532' => 'egr', 'Eucgr.K00553' => 'egr', 'Eucgr.K03116' => 'egr', 'FAN02G3963' => 'fan', 'FAN05G0438' => 'fan', 'FAN09G2434' => 'fan', 'FAN12G3984' => 'fan', 'FAN14G0798' => 'fan', 'FAN17G0652' => 'fan', 'FAN19G1988' => 'fan', 'FAN22G0632' => 'fan', 'FAN23G0387' => 'fan', 'FAN26G1323' => 'fan', 'FAN28G0666' => 'fan', 'FvH4_1g26080' => 'fve', 'FvH4_3g36780' => 'fve', 'FvH4_4g15270' => 'fve', 'FvH4_6g13490' => 'fve', 'Glyma.01G098700' => 'gma', 'Glyma.03G065900' => 'gma', 'Glyma.03G073754' => 'gma', 'Glyma.03G073758' => 'gma', 'Glyma.03G083200' => 'gma', 'Glyma.03G225500' => 'gma', 'Glyma.05G037766' => 'gma', 'Glyma.07G133500' => 'gma', 'Glyma.10G139400' => 'gma', 'Glyma.10G248900' => 'gma', 'Glyma.11G137800' => 'gma', 'Glyma.12G061300' => 'gma', 'Glyma.13G337900' => 'gma', 'Glyma.15G036600' => 'gma', 'Glyma.18G182800' => 'gma', 'Glyma.19G222500' => 'gma', 'Glyma.20G144800' => 'gma', 'Gohir.A01G222000' => 'ghi', 'Gohir.A03G044000' => 'ghi', 'Gohir.A03G044100' => 'ghi', 'Gohir.A04G083100' => 'ghi', 'Gohir.A07G127200' => 'ghi', 'Gohir.A07G132400' => 'ghi', 'Gohir.A08G000700' => 'ghi', 'Gohir.A11G327300' => 'ghi', 'Gohir.D01G211500' => 'ghi', 'Gohir.D03G123400' => 'ghi', 'Gohir.D03G123500' => 'ghi', 'Gohir.D04G121800' => 'ghi', 'Gohir.D07G131500' => 'ghi', 'Gohir.D07G136600' => 'ghi', 'Gohir.D08G011600' => 'ghi', 'Gohir.D11G346200' => 'ghi', 'Gorai.001G142800' => 'gra', 'Gorai.001G148700' => 'gra', 'Gorai.002G257300' => 'gra', 'Gorai.003G130000' => 'gra', 'Gorai.003G130100' => 'gra', 'Gorai.004G005300' => 'gra', 'Gorai.007G376500' => 'gra', 'Gorai.012G104700' => 'gra', 'GSVIVG01017946001' => 'vvi', 'GSVIVG01024928001' => 'vvi', 'GSVIVG01028227001' => 'vvi', 'GSVIVG01034151001' => 'vvi', 'HanXRQChr05g0135031' => 'han', 'HanXRQChr05g0135041' => 'han', 'HanXRQChr05g0140021' => 'han', 'HanXRQChr06g0178981' => 'han', 'HanXRQChr07g0188251' => 'han', 'HanXRQChr08g0235311' => 'han', 'HanXRQChr09g0271011' => 'han', 'HanXRQChr10g0293321' => 'han', 'HanXRQChr13g0388171' => 'han', 'Haze_00916' => 'cav', 'Haze_05063' => 'cav', 'Haze_20814' => 'cav', 'Haze_24128' => 'cav', 'Hma1.2p1_0745F.1_g212010' => 'hma', 'Hma1.2p1_0757F.1_g213260' => 'hma', 'Hma1.2p1_0936F.1_g238840' => 'hma', 'Hma1.2p1_1735F.1_g299890' => 'hma', 'Hma1.2p1_1861F.1_g305685' => 'hma', 'HPP92_003397' => 'vpl', 'HPP92_012597' => 'vpl', 'HPP92_015520' => 'vpl', 'HPP92_015539' => 'vpl', 'HPP92_020373' => 'vpl', 'Hund04938' => 'sun', 'Hund10677' => 'sun', 'Hund11033' => 'sun', 'Hund12155' => 'sun', 'Lalb_Chr01g0022551' => 'lal', 'Lalb_Chr03g0042341' => 'lal', 'Lalb_Chr07g0192931' => 'lal', 'Lalb_Chr12g0209551' => 'lal', 'Lalb_Chr19g0125251' => 'lal', 'Lalb_Chr19g0137891' => 'lal', 'Lalb_Chr21g0304641' => 'lal', 'Lalb_Chr21g0309881' => 'lal', 'Lj1A5T12' => 'lonja', 'Lj1C148G10' => 'lonja', 'Lj2A93T83' => 'lonja', 'Lj3A738G68' => 'lonja', 'Lj3C966T1' => 'lonja', 'Lj3g0018958' => 'lja', 'Lj3g0021831' => 'lja', 'Lj3g0025443' => 'lja', 'Lj4g0026809' => 'lja', 'Lj5g0012558' => 'lja', 'Lj5g0021586' => 'lja', 'Lsat_1_v5_gn_5_156840' => 'lsa', 'Lsat_1_v5_gn_8_73460' => 'lsa', 'Lsat_1_v5_gn_8_73481' => 'lsa', 'Lsat_1_v5_gn_9_31601' => 'lsa', 'Lsat_1_v5_gn_9_77320' => 'lsa', 'Manes.01G171300' => 'mes', 'Manes.01G171400' => 'mes', 'Manes.01G236100' => 'mes', 'Manes.02G130500' => 'mes', 'Manes.02G130600' => 'mes', 'Manes.03G180200' => 'mes', 'Manes.05G007000' => 'mes', 'Manes.08G084400' => 'mes', 'Manes.09G092600' => 'mes', 'Manes.15G027900' => 'mes', 'MBI04_g40948_MAGBIO' => 'mbi', 'MBI14_g12123_MAGBIO' => 'mbi', 'MBI18_g28915_MAGBIO' => 'mbi', 'MCO09G053' => 'mco', 'MCO11G782' => 'mco', 'MCO15G215' => 'mco', 'MD03G1088500' => 'mdo', 'MD03G1088600' => 'mdo', 'MD04G1130800' => 'mdo', 'MD09G1291700' => 'mdo', 'MD11G1097500' => 'mdo', 'MD11G1097600' => 'mdo', 'MD12G1143900' => 'mdo', 'MD13G1191400' => 'mdo', 'MD16G1191500' => 'mdo', 'Medtr1g085570' => 'mtr', 'Medtr1g104610' => 'mtr', 'Medtr2g097520' => 'mtr', 'Medtr4g021800' => 'mtr', 'Medtr4g021825' => 'mtr', 'Medtr4g064270' => 'mtr', 'Medtr4g064380' => 'mtr', 'Medtr7g062150' => 'mtr', 'MELO3C003138.2' => 'cme', 'MELO3C005187.2' => 'cme', 'MELO3C009252.2' => 'cme', 'MELO3C014481.2' => 'cme', 'MELO3C020616.2' => 'cme', 'MELO3C020617.2' => 'cme', 'MELO3C020618.2' => 'cme', 'Migut.G00328' => 'egut', 'Migut.J00320' => 'egut', 'Migut.L01000' => 'egut', 'Migut.L01953' => 'egut', 'MSTRG.10253' => 'ama', 'MSTRG.19077' => 'ama', 'MSTRG.26780' => 'ama', 'MSTRG.4023' => 'ama', 'MSTRG.5655' => 'ama', 'MSTRG.9992' => 'ama', 'Nitab4.5_0000043g0310' => 'nta', 'Nitab4.5_0000463g0080' => 'nta', 'Nitab4.5_0000705g0170' => 'nta', 'Nitab4.5_0001326g0060' => 'nta', 'Nitab4.5_0001628g0030' => 'nta', 'Nitab4.5_0002103g0110' => 'nta', 'Nitab4.5_0002946g0030' => 'nta', 'Nitab4.5_0004639g0030' => 'nta', 'Nn2g11149' => 'nnu', 'Nn2g13389' => 'nnu', 'Nn4g25326' => 'nnu', 'Nn4g26290' => 'nnu', 'Nn5g29865' => 'nnu', 'Oeu004163.1' => 'oeu', 'Oeu006901.1' => 'oeu', 'Oeu010096.1' => 'oeu', 'Oeu024340.1' => 'oeu', 'Oeu048369.1' => 'oeu', 'Os01g0973000' => 'osa', 'Os03g0273800' => 'osa', 'Os03g0701200' => 'osa', 'Os03g0834050' => 'osa', 'Os07g0634400' => 'osa', 'Peaxi162Scf00092g01414' => 'pax', 'Peaxi162Scf00165g00818' => 'pax', 'Peaxi162Scf00309g00516' => 'pax', 'Peaxi162Scf00774g00218' => 'pax', 'PGR004G1824' => 'pgr', 'PGR004G2606' => 'pgr', 'PGR031G2716' => 'pgr', 'PGR102G2460' => 'pgr', 'PGR142G2599' => 'pgr', 'PGSC0003DMG400000843' => 'stu', 'PGSC0003DMG400008829' => 'stu', 'PGSC0003DMG400030418' => 'stu', 'PGSC0003DMG400031834' => 'stu', 'PGSC0003DMG401028300' => 'stu', 'PGSC0003DMG402028300' => 'stu', 'Phvul.001G219300' => 'pvu', 'Phvul.007G056000' => 'pvu', 'Phvul.007G208000' => 'pvu', 'Phvul.008G119500' => 'pvu', 'Phvul.010G011200' => 'pvu', 'Phvul.010G014800' => 'pvu', 'Phvul.011G062900' => 'pvu', 'Phvul.L007043' => 'pvu', 'Potri.001G242300' => 'ptr', 'Potri.002G185300' => 'ptr', 'Potri.006G086900' => 'ptr', 'Potri.008G151700' => 'ptr', 'Potri.009G033500' => 'ptr', 'Potri.010G089300' => 'ptr', 'Potri.014G110800' => 'ptr', 'Pp3c27_8130' => 'ppa', 'Pp3c6_27410' => 'ppa', 'PRCOL_00001659' => 'pco', 'PRCOL_00001927' => 'pco', 'PRCOL_00003649' => 'pco', 'Prupe.1G011600' => 'ppe', 'Prupe.3G000800' => 'ppe', 'Prupe.3G001100' => 'ppe', 'Prupe.6G072700' => 'ppe', 'Prupe.6G072800' => 'ppe', 'Prupe.6G257300' => 'ppe', 'Prupe.8G033000' => 'ppe', 'Psat0s2633g0080' => 'psa', 'Psat0s3396g0080' => 'psa', 'Psat0s3396g0200' => 'psa', 'Psat3g139080' => 'psa', 'Psat5g285080' => 'psa', 'Psat6g157760' => 'psa', 'Psat6g208440' => 'psa', 'Psat7g215320' => 'psa', 'Psat7g215400' => 'psa', 'Psat7g235600' => 'psa', 'Psat7g235760' => 'psa', 'PSO063G4603' => 'pso', 'PSO210G0182' => 'pso', 'PSO210G0196' => 'pso', 'PSO339G0394' => 'pso', 'PSO339G4127' => 'pso', 'PSO513G0064' => 'pso', 'PSO761G0079' => 'pso', 'QL01p031003' => 'qlo', 'QL01p031078' => 'qlo', 'QL06p003004' => 'qlo', 'QL07p048731' => 'qlo', 'QL09p037427' => 'qlo', 'RcHm_v2.0_Chr3g0466361' => 'rch', 'RcHm_v2.0_Chr3g0485571' => 'rch', 'RcHm_v2.0_Chr4g0416551' => 'rch', 'RcHm_v2.0_Chr5g0065831' => 'rch', 'Rhsim01G0230500' => 'rsi', 'Rhsim05G0194000' => 'rsi', 'Rhsim08G0250400' => 'rsi', 'Sabra02G0131000' => 'sbr', 'Sabra06G0066300' => 'sbr', 'Sabra08G0115500' => 'sbr', 'Sabra09G0023900' => 'sbr', 'Sabra10G0054000' => 'sbr', 'Sabra14G0081500' => 'sbr', 'Sabra16G0147100' => 'sbr', 'SalBow2G2957' => 'sbo', 'SalBow4G3320' => 'sbo', 'SalBow8G1894' => 'sbo', 'Sc07g0007950' => 'sci', 'Sc12g0001360' => 'sci', 'Sc13g0004330' => 'sci', 'Sc20g0005010' => 'sci', 'Sed0000361' => 'sed', 'Sed0001706' => 'sed', 'Sed0002422' => 'sed', 'Sed0004029' => 'sed', 'Sed0004602' => 'sed', 'Sed0004943' => 'sed', 'Sed0008646' => 'sed', 'Sed0023313' => 'sed', 'Sed0024843' => 'sed', 'SEGI_00081' => 'sgi', 'SEGI_00947' => 'sgi', 'SEGI_04046' => 'sgi', 'SEGI_06880' => 'sgi', 'SEGI_09736' => 'sgi', 'SEGI_12741' => 'sgi', 'SEGI_14530' => 'sgi', 'SEGI_20705' => 'sgi', 'SEGI_26088' => 'sgi', 'SEGI_28323' => 'sgi', 'SEGI_33343' => 'sgi', 'SGA_v2.0_scaffold126G33775' => 'sas', 'SGA_v2.0_scaffold2G01337' => 'sas', 'SGA_v2.0_scaffold38G15006' => 'sas', 'SGA_v2.0_scaffold39G15264' => 'sas', 'SGA_v2.0_scaffold453G51880' => 'sas', 'SHI12696' => 'shi', 'SMO367G1096' => 'smo', 'Solyc01g068630.3' => 'sly', 'Solyc05g011880.3' => 'sly', 'Solyc06g076300.3' => 'sly', 'Solyc09g010940.4' => 'sly', 'Solyc09g075890.3' => 'sly', 'Sopen01g030560' => 'spe', 'Sopen05g006630' => 'spe', 'Sopen06g032720' => 'spe', 'Sopen09g005660' => 'spe', 'Sopen09g030690' => 'spe', 'Sp4g14540' => 'spa', 'Sp4g20030' => 'spa', 'Sp5g01320' => 'spa', 'Sp6g21170' => 'spa', 'Sp6g21180' => 'spa', 'Sp6g21190' => 'spa', 'Sp6g40220' => 'spa', 'TAR362G0122' => 'tar', 'TAR362G1338' => 'tar', 'TAR369G0590' => 'tar', 'TAR371G0824' => 'tar', 'TAR622G1429' => 'tar', 'TAR623G0734' => 'tar', 'TAR625G0441' => 'tar', 'TAR629G0976' => 'tar', 'TAR633G1195' => 'tar', 'TAR636G2660' => 'tar', 'THA.LOC104799440' => 'tha', 'THA.LOC104800966' => 'tha', 'THA.LOC104806559' => 'tha', 'THA.LOC104810765' => 'tha', 'THA.LOC104816266' => 'tha', 'THA.LOC104817419' => 'tha', 'THA.LOC104827021' => 'tha', 'Thecc.01G327400' => 'tca', 'Thecc.04G229200' => 'tca', 'Thecc.05G037400' => 'tca', 'Thecc.09G318600' => 'tca', 'Thecc.09G318700' => 'tca', 'Thhalv10006238m.g' => 'esa', 'Thhalv10014321m.g' => 'esa', 'Thhalv10014335m.g' => 'esa', 'Thhalv10015826m.g' => 'esa', 'Thhalv10017107m.g' => 'esa', 'Thhalv10017180m.g' => 'esa', 'Thhalv10029339m.g' => 'esa', 'TPR.G1699' => 'tpr', 'TPR.G23609' => 'tpr', 'TPR.G3081' => 'tpr', 'TPR.G40397' => 'tpr', 'TPR.G5522' => 'tpr', 'TPR.G5618' => 'tpr', 'TPR.G5626' => 'tpr', 'TWI09G1632' => 'twi', 'TWI23G1230' => 'twi', 'TWI53G1064' => 'twi', 'TWI59G0751' => 'twi', 'TWI74G0947' => 'twi', 'TWI77G0337' => 'twi', 'TWI79G1254' => 'twi', 'unitig_0.g2341' => 'ugi', 'unitig_26.g10006' => 'ugi', 'unitig_26.g10008' => 'ugi', 'unitig_26.g9192' => 'ugi', 'vmacro14547' => 'vma', 'vmacro15333' => 'vma', 'vmacro18743' => 'vma', 'vmacro20166' => 'vma', 'VMungo0331G0523' => 'vmu', 'VMungo0331G1202' => 'vmu', 'VMungo0720G1228' => 'vmu', 'VMungo0720G1514' => 'vmu', 'VMungo1080G0169' => 'vmu', 'VMungo1127G1475' => 'vmu', 'VMungo1383G1208' => 'vmu', 'VMungo1383G1698' => 'vmu', 'Zm00001eb012270' => 'zma', 'Zm00001eb054100' => 'zma', 'Zm00001eb063350' => 'zma', 'Zm00001eb328560' => 'zma', 'Zm00001eb342820' => 'zma', 'Zm00001eb362210' => 'zma', 'Zm00001eb397730' => 'zma', 'Zm00001eb399750' => 'zma' ), 'gf_id' => 'HOM05D000959', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000959' ), 'data_identifier' => 'HOM05D000959', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000959', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '622', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p07100' => 'bna', 'A03p11720' => 'bna', 'A05p08300' => 'bna', 'A05p13380' => 'bna', 'A09p54130' => 'bna', 'A10p16690' => 'bna', 'A10p16700' => 'bna', 'A10p33390' => 'bna', 'Aa31LG10G16020' => 'aar', 'Aa31LG1G11810' => 'aar', 'Aa31LG1G11830' => 'aar', 'Aa31LG1G22510' => 'aar', 'Aa31LG5G4890' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5793' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2310' => 'aag', 'Actinidia08499' => 'ach', 'Actinidia11262' => 'ach', 'Actinidia23926' => 'ach', 'Actinidia34420' => 'ach', 'Actinidia36970' => 'ach', 'Ah.02g111220' => 'amhyb', 'Ah.15g097750' => 'amhyb', 'AL4G27500' => 'aly', 'AL6G11470' => 'aly', 'AL8G35950' => 'aly', 'AL8G35960' => 'aly', 'AL8G35970' => 'aly', 'Aqoxy1G00912' => 'aox', 'Aqoxy2G02253' => 'aox', 'Aqoxy2G02411' => 'aox', 'Aqoxy5G00485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BZ66YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K8ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM4FUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6BF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HFV7XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25JBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0YNNV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MAKK6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P70IT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP2Z6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V61LZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YWP64R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3S9AI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7PGHH' => 'arhy', 'AT2G32150' => 'ath', 'AT3G62040' => 'ath', 'AT5G02230' => 'ath', 'AT5G59480' => 'ath', 'AT5G59490' => 'ath', 'ATR0332G060' => 'atr', 'ATR0559G190' => 'atr', 'ATR0693G294' => 'atr', 'Atru.chr3.3975' => 'acertr', 'Atru.chr3.3976' => 'acertr', 'Atru.chr3.3977' => 'acertr', 'Atru.chr4.2498' => 'acertr', 'Atru.chr5.838' => 'acertr', 'Atru.chr8.1990' => 'acertr', 'Atru.chr8.1991' => 'acertr', 'Atru.chr8.1992' => 'acertr', 'AUR62001759' => 'cqu', 'AUR62009545' => 'cqu', 'AUR62010474' => 'cqu', 'AUR62025820' => 'cqu', 'AUR62030422' => 'cqu', 'AUR62033605' => 'cqu', 'AUR62038615' => 'cqu', 'AUR62041347' => 'cqu', 'BcaB01g04574' => 'bca', 'BcaB02g09263' => 'bca', 'BcaB02g10453' => 'bca', 'BcaB05g22513' => 'bca', 'BcaB08g36253' => 'bca', 'BcaB08g36254' => 'bca', 'BcaC01g06519' => 'bca', 'BcaC02g11889' => 'bca', 'BcaC03g14010' => 'bca', 'BcaC03g18439' => 'bca', 'BcaC04g19765' => 'bca', 'BcaC09g48432' => 'bca', 'BcaNung07302' => 'bca', 'BolC2t06040H' => 'bol', 'BolC2t07346H' => 'bol', 'BolC3t13817H' => 'bol', 'BolC4t22625H' => 'bol', 'BolC4t23297H' => 'bol', 'BolC8t51278H' => 'bol', 'BolC9t58050H' => 'bol', 'BolC9t58051H' => 'bol', 'BolC9t60163H' => 'bol', 'BraA02t04712Z' => 'bra', 'BraA02t05791Z' => 'bra', 'BraA03t10483Z' => 'bra', 'BraA05t19795Z' => 'bra', 'BraA05t20276Z' => 'bra', 'BraA09t40827Z' => 'bra', 'BraA10t43750Z' => 'bra', 'BraA10t43751Z' => 'bra', 'BraA10t45370Z' => 'bra', 'C02p00400' => 'bna', 'C02p12460' => 'bna', 'C03p13680' => 'bna', 'C04p10270' => 'bna', 'C04p17500' => 'bna', 'C08p37010' => 'bna', 'C09p51880' => 'bna', 'C09p51890' => 'bna', 'C09p74300' => 'bna', 'CAN.G179.26' => 'can', 'CAN.G3384.1' => 'can', 'CAN.G394.68' => 'can', 'CAN.G907.13' => 'can', 'CANSAT11G0012' => 'cansat', 'CANSAT25G1586' => 'cansat', 'CANSAT35G0735' => 'cansat', 'CANSAT54G0556' => 'cansat', 'CANSAT64G0356' => 'cansat', 'CANSAT78G2042' => 'cansat', 'CARHR125920' => 'chi', 'CARHR131910' => 'chi', 'CARHR172390' => 'chi', 'CARHR211140' => 'chi', 'CARHR285850' => 'chi', 'CARHR285860' => 'chi', 'Carub.0004s1347' => 'cru', 'Carub.0004s1960' => 'cru', 'Carub.0005s2880' => 'cru', 'Carub.0006s0107' => 'cru', 'Carub.0008s2015' => 'cru', 'Carub.0008s2016' => 'cru', 'Carub.0008s2017' => 'cru', 'Ca_01315_v3' => 'car', 'Ca_05063_v3' => 'car', 'Ca_10231_v3' => 'car', 'Ca_10913_v3' => 'car', 'Ca_19156_v3' => 'car', 'Ca_23644_v3' => 'car', 'Ca_26735_v3' => 'car', 'Cc01_g13130' => 'ccan', 'Cc02_g21690' => 'ccan', 'Cc03_g03600' => 'ccan', 'Cc06_g02510' => 'ccan', 'CDE02G1265' => 'cde', 'CDE05G0415' => 'cde', 'CDE08G1082' => 'cde', 'Cfa005780' => 'cfa', 'Cfa011522' => 'cfa', 'Cfa011523' => 'cfa', 'Cfa015627' => 'cfa', 'Cfa017359' => 'cfa', 'Ciclev10005687m.g' => 'ccl', 'Ciclev10012173m.g' => 'ccl', 'Ciclev10021621m.g' => 'ccl', 'Ciclev10028968m.g' => 'ccl', 'Ciclev10029907m.g' => 'ccl', 'CiPaw.01G164800' => 'cil', 'CiPaw.07G083700' => 'cil', 'CiPaw.07G127000' => 'cil', 'CiPaw.07G136900' => 'cil', 'CiPaw.08G081700' => 'cil', 'CiPaw.09G194600' => 'cil', 'CiPaw.10G146500' => 'cil', 'CiPaw.13G091500' => 'cil', 'CiPaw.13G091600' => 'cil', 'ClCG00G003390' => 'cla', 'ClCG01G007220' => 'cla', 'ClCG03G001370' => 'cla', 'ClCG04G008100' => 'cla', 'ClCG06G006110' => 'cla', 'ClCG06G006130' => 'cla', 'ClCG10G021210' => 'cla', 'COL.COLO4_07648' => 'col', 'COL.COLO4_07650' => 'col', 'COL.COLO4_07651' => 'col', 'COL.COLO4_14780' => 'col', 'COL.COLO4_18546' => 'col', 'COL.COLO4_18547' => 'col', 'COL.COLO4_23103' => 'col', 'COL.COLO4_30419' => 'col', 'COL.COLO4_34232' => 'col', 'Cpa.g.sc169.20' => 'cpa', 'Cpa.g.sc57.45' => 'cpa', 'Cpa.g.sc58.124' => 'cpa', 'Cpa.g.sc58.125' => 'cpa', 'Cpa.g.sc81.118' => 'cpa', 'Cpa.g.sc81.119' => 'cpa', 'Cre12.g524700' => 'cre', 'CsaV3_1G034430' => 'csa', 'CsaV3_1G034440' => 'csa', 'CsaV3_1G034450' => 'csa', 'CsaV3_3G034830' => 'csa', 'CsaV3_4G025090' => 'csa', 'CsaV3_5G018660' => 'csa', 'CsaV3_6G038160' => 'csa', 'CSS0003447' => 'camsi', 'CSS0017840' => 'camsi', 'CSS0019260' => 'camsi', 'CSS0040375' => 'camsi', 'CSS0042533' => 'camsi', 'DCAR_005960' => 'dca', 'DCAR_012104' => 'dca', 'DCAR_012105' => 'dca', 'DCAR_012293' => 'dca', 'DCAR_015632' => 'dca', 'DCAR_024602' => 'dca', 'DCAR_028752' => 'dca', 'Dinv06261' => 'din', 'Dinv13982' => 'din', 'Dinv17029' => 'din', 'Dinv18463' => 'din', 'Dinv33181' => 'din', 'Dinv35585' => 'din', 'Dinv37161' => 'din', 'Dinv42977' => 'din', 'Dinv43122' => 'din', 'Dinv44517' => 'din', 'Duzib093G0256' => 'dzi', 'Duzib106G1254' => 'dzi', 'Duzib128G1789' => 'dzi', 'Duzib133G0633' => 'dzi', 'Duzib138G0510' => 'dzi', 'Duzib150G1084' => 'dzi', 'Duzib168G0488' => 'dzi', 'Duzib168G1523' => 'dzi', 'Duzib170G0133' => 'dzi', 'ECA234G1433' => 'eca', 'ECA236G1432' => 'eca', 'ECA236G2256' => 'eca', 'ECA236G2365' => 'eca', 'ECA236G4830' => 'eca', 'ECA248G1505' => 'eca', 'EL10Ac3g06431' => 'bvu', 'EL10Ac5g12577' => 'bvu', 'EL10Ac6g13533' => 'bvu', 'EL10Ac7g16045' => 'bvu', 'Eucgr.A01281' => 'egr', 'Eucgr.B02326' => 'egr', 'Eucgr.H03532' => 'egr', 'Eucgr.K00553' => 'egr', 'Eucgr.K03116' => 'egr', 'FAN02G3963' => 'fan', 'FAN05G0438' => 'fan', 'FAN09G2434' => 'fan', 'FAN12G3984' => 'fan', 'FAN14G0798' => 'fan', 'FAN17G0652' => 'fan', 'FAN19G1988' => 'fan', 'FAN22G0632' => 'fan', 'FAN23G0387' => 'fan', 'FAN26G1323' => 'fan', 'FAN28G0666' => 'fan', 'FvH4_1g26080' => 'fve', 'FvH4_3g36780' => 'fve', 'FvH4_4g15270' => 'fve', 'FvH4_6g13490' => 'fve', 'Glyma.01G098700' => 'gma', 'Glyma.03G065900' => 'gma', 'Glyma.03G073754' => 'gma', 'Glyma.03G073758' => 'gma', 'Glyma.03G083200' => 'gma', 'Glyma.03G225500' => 'gma', 'Glyma.05G037766' => 'gma', 'Glyma.07G133500' => 'gma', 'Glyma.10G139400' => 'gma', 'Glyma.10G248900' => 'gma', 'Glyma.11G137800' => 'gma', 'Glyma.12G061300' => 'gma', 'Glyma.13G337900' => 'gma', 'Glyma.15G036600' => 'gma', 'Glyma.18G182800' => 'gma', 'Glyma.19G222500' => 'gma', 'Glyma.20G144800' => 'gma', 'Gohir.A01G222000' => 'ghi', 'Gohir.A03G044000' => 'ghi', 'Gohir.A03G044100' => 'ghi', 'Gohir.A04G083100' => 'ghi', 'Gohir.A07G127200' => 'ghi', 'Gohir.A07G132400' => 'ghi', 'Gohir.A08G000700' => 'ghi', 'Gohir.A11G327300' => 'ghi', 'Gohir.D01G211500' => 'ghi', 'Gohir.D03G123400' => 'ghi', 'Gohir.D03G123500' => 'ghi', 'Gohir.D04G121800' => 'ghi', 'Gohir.D07G131500' => 'ghi', 'Gohir.D07G136600' => 'ghi', 'Gohir.D08G011600' => 'ghi', 'Gohir.D11G346200' => 'ghi', 'Gorai.001G142800' => 'gra', 'Gorai.001G148700' => 'gra', 'Gorai.002G257300' => 'gra', 'Gorai.003G130000' => 'gra', 'Gorai.003G130100' => 'gra', 'Gorai.004G005300' => 'gra', 'Gorai.007G376500' => 'gra', 'Gorai.012G104700' => 'gra', 'GSVIVG01017946001' => 'vvi', 'GSVIVG01024928001' => 'vvi', 'GSVIVG01028227001' => 'vvi', 'GSVIVG01034151001' => 'vvi', 'HanXRQChr05g0135031' => 'han', 'HanXRQChr05g0135041' => 'han', 'HanXRQChr05g0140021' => 'han', 'HanXRQChr06g0178981' => 'han', 'HanXRQChr07g0188251' => 'han', 'HanXRQChr08g0235311' => 'han', 'HanXRQChr09g0271011' => 'han', 'HanXRQChr10g0293321' => 'han', 'HanXRQChr13g0388171' => 'han', 'Haze_00916' => 'cav', 'Haze_05063' => 'cav', 'Haze_20814' => 'cav', 'Haze_24128' => 'cav', 'Hma1.2p1_0745F.1_g212010' => 'hma', 'Hma1.2p1_0757F.1_g213260' => 'hma', 'Hma1.2p1_0936F.1_g238840' => 'hma', 'Hma1.2p1_1735F.1_g299890' => 'hma', 'Hma1.2p1_1861F.1_g305685' => 'hma', 'HPP92_003397' => 'vpl', 'HPP92_012597' => 'vpl', 'HPP92_015520' => 'vpl', 'HPP92_015539' => 'vpl', 'HPP92_020373' => 'vpl', 'Hund04938' => 'sun', 'Hund10677' => 'sun', 'Hund11033' => 'sun', 'Hund12155' => 'sun', 'Lalb_Chr01g0022551' => 'lal', 'Lalb_Chr03g0042341' => 'lal', 'Lalb_Chr07g0192931' => 'lal', 'Lalb_Chr12g0209551' => 'lal', 'Lalb_Chr19g0125251' => 'lal', 'Lalb_Chr19g0137891' => 'lal', 'Lalb_Chr21g0304641' => 'lal', 'Lalb_Chr21g0309881' => 'lal', 'Lj1A5T12' => 'lonja', 'Lj1C148G10' => 'lonja', 'Lj2A93T83' => 'lonja', 'Lj3A738G68' => 'lonja', 'Lj3C966T1' => 'lonja', 'Lj3g0018958' => 'lja', 'Lj3g0021831' => 'lja', 'Lj3g0025443' => 'lja', 'Lj4g0026809' => 'lja', 'Lj5g0012558' => 'lja', 'Lj5g0021586' => 'lja', 'Lsat_1_v5_gn_5_156840' => 'lsa', 'Lsat_1_v5_gn_8_73460' => 'lsa', 'Lsat_1_v5_gn_8_73481' => 'lsa', 'Lsat_1_v5_gn_9_31601' => 'lsa', 'Lsat_1_v5_gn_9_77320' => 'lsa', 'Manes.01G171300' => 'mes', 'Manes.01G171400' => 'mes', 'Manes.01G236100' => 'mes', 'Manes.02G130500' => 'mes', 'Manes.02G130600' => 'mes', 'Manes.03G180200' => 'mes', 'Manes.05G007000' => 'mes', 'Manes.08G084400' => 'mes', 'Manes.09G092600' => 'mes', 'Manes.15G027900' => 'mes', 'MBI04_g40948_MAGBIO' => 'mbi', 'MBI14_g12123_MAGBIO' => 'mbi', 'MBI18_g28915_MAGBIO' => 'mbi', 'MCO09G053' => 'mco', 'MCO11G782' => 'mco', 'MCO15G215' => 'mco', 'MD03G1088500' => 'mdo', 'MD03G1088600' => 'mdo', 'MD04G1130800' => 'mdo', 'MD09G1291700' => 'mdo', 'MD11G1097500' => 'mdo', 'MD11G1097600' => 'mdo', 'MD12G1143900' => 'mdo', 'MD13G1191400' => 'mdo', 'MD16G1191500' => 'mdo', 'Medtr1g085570' => 'mtr', 'Medtr1g104610' => 'mtr', 'Medtr2g097520' => 'mtr', 'Medtr4g021800' => 'mtr', 'Medtr4g021825' => 'mtr', 'Medtr4g064270' => 'mtr', 'Medtr4g064380' => 'mtr', 'Medtr7g062150' => 'mtr', 'MELO3C003138.2' => 'cme', 'MELO3C005187.2' => 'cme', 'MELO3C009252.2' => 'cme', 'MELO3C014481.2' => 'cme', 'MELO3C020616.2' => 'cme', 'MELO3C020617.2' => 'cme', 'MELO3C020618.2' => 'cme', 'Migut.G00328' => 'egut', 'Migut.J00320' => 'egut', 'Migut.L01000' => 'egut', 'Migut.L01953' => 'egut', 'MSTRG.10253' => 'ama', 'MSTRG.19077' => 'ama', 'MSTRG.26780' => 'ama', 'MSTRG.4023' => 'ama', 'MSTRG.5655' => 'ama', 'MSTRG.9992' => 'ama', 'Nitab4.5_0000043g0310' => 'nta', 'Nitab4.5_0000463g0080' => 'nta', 'Nitab4.5_0000705g0170' => 'nta', 'Nitab4.5_0001326g0060' => 'nta', 'Nitab4.5_0001628g0030' => 'nta', 'Nitab4.5_0002103g0110' => 'nta', 'Nitab4.5_0002946g0030' => 'nta', 'Nitab4.5_0004639g0030' => 'nta', 'Nn2g11149' => 'nnu', 'Nn2g13389' => 'nnu', 'Nn4g25326' => 'nnu', 'Nn4g26290' => 'nnu', 'Nn5g29865' => 'nnu', 'Oeu004163.1' => 'oeu', 'Oeu006901.1' => 'oeu', 'Oeu010096.1' => 'oeu', 'Oeu024340.1' => 'oeu', 'Oeu048369.1' => 'oeu', 'Os01g0973000' => 'osa', 'Os03g0273800' => 'osa', 'Os03g0701200' => 'osa', 'Os03g0834050' => 'osa', 'Os07g0634400' => 'osa', 'Peaxi162Scf00092g01414' => 'pax', 'Peaxi162Scf00165g00818' => 'pax', 'Peaxi162Scf00309g00516' => 'pax', 'Peaxi162Scf00774g00218' => 'pax', 'PGR004G1824' => 'pgr', 'PGR004G2606' => 'pgr', 'PGR031G2716' => 'pgr', 'PGR102G2460' => 'pgr', 'PGR142G2599' => 'pgr', 'PGSC0003DMG400000843' => 'stu', 'PGSC0003DMG400008829' => 'stu', 'PGSC0003DMG400030418' => 'stu', 'PGSC0003DMG400031834' => 'stu', 'PGSC0003DMG401028300' => 'stu', 'PGSC0003DMG402028300' => 'stu', 'Phvul.001G219300' => 'pvu', 'Phvul.007G056000' => 'pvu', 'Phvul.007G208000' => 'pvu', 'Phvul.008G119500' => 'pvu', 'Phvul.010G011200' => 'pvu', 'Phvul.010G014800' => 'pvu', 'Phvul.011G062900' => 'pvu', 'Phvul.L007043' => 'pvu', 'Potri.001G242300' => 'ptr', 'Potri.002G185300' => 'ptr', 'Potri.006G086900' => 'ptr', 'Potri.008G151700' => 'ptr', 'Potri.009G033500' => 'ptr', 'Potri.010G089300' => 'ptr', 'Potri.014G110800' => 'ptr', 'Pp3c27_8130' => 'ppa', 'Pp3c6_27410' => 'ppa', 'PRCOL_00001659' => 'pco', 'PRCOL_00001927' => 'pco', 'PRCOL_00003649' => 'pco', 'Prupe.1G011600' => 'ppe', 'Prupe.3G000800' => 'ppe', 'Prupe.3G001100' => 'ppe', 'Prupe.6G072700' => 'ppe', 'Prupe.6G072800' => 'ppe', 'Prupe.6G257300' => 'ppe', 'Prupe.8G033000' => 'ppe', 'Psat0s2633g0080' => 'psa', 'Psat0s3396g0080' => 'psa', 'Psat0s3396g0200' => 'psa', 'Psat3g139080' => 'psa', 'Psat5g285080' => 'psa', 'Psat6g157760' => 'psa', 'Psat6g208440' => 'psa', 'Psat7g215320' => 'psa', 'Psat7g215400' => 'psa', 'Psat7g235600' => 'psa', 'Psat7g235760' => 'psa', 'PSO063G4603' => 'pso', 'PSO210G0182' => 'pso', 'PSO210G0196' => 'pso', 'PSO339G0394' => 'pso', 'PSO339G4127' => 'pso', 'PSO513G0064' => 'pso', 'PSO761G0079' => 'pso', 'QL01p031003' => 'qlo', 'QL01p031078' => 'qlo', 'QL06p003004' => 'qlo', 'QL07p048731' => 'qlo', 'QL09p037427' => 'qlo', 'RcHm_v2.0_Chr3g0466361' => 'rch', 'RcHm_v2.0_Chr3g0485571' => 'rch', 'RcHm_v2.0_Chr4g0416551' => 'rch', 'RcHm_v2.0_Chr5g0065831' => 'rch', 'Rhsim01G0230500' => 'rsi', 'Rhsim05G0194000' => 'rsi', 'Rhsim08G0250400' => 'rsi', 'Sabra02G0131000' => 'sbr', 'Sabra06G0066300' => 'sbr', 'Sabra08G0115500' => 'sbr', 'Sabra09G0023900' => 'sbr', 'Sabra10G0054000' => 'sbr', 'Sabra14G0081500' => 'sbr', 'Sabra16G0147100' => 'sbr', 'SalBow2G2957' => 'sbo', 'SalBow4G3320' => 'sbo', 'SalBow8G1894' => 'sbo', 'Sc07g0007950' => 'sci', 'Sc12g0001360' => 'sci', 'Sc13g0004330' => 'sci', 'Sc20g0005010' => 'sci', 'Sed0000361' => 'sed', 'Sed0001706' => 'sed', 'Sed0002422' => 'sed', 'Sed0004029' => 'sed', 'Sed0004602' => 'sed', 'Sed0004943' => 'sed', 'Sed0008646' => 'sed', 'Sed0023313' => 'sed', 'Sed0024843' => 'sed', 'SEGI_00081' => 'sgi', 'SEGI_00947' => 'sgi', 'SEGI_04046' => 'sgi', 'SEGI_06880' => 'sgi', 'SEGI_09736' => 'sgi', 'SEGI_12741' => 'sgi', 'SEGI_14530' => 'sgi', 'SEGI_20705' => 'sgi', 'SEGI_26088' => 'sgi', 'SEGI_28323' => 'sgi', 'SEGI_33343' => 'sgi', 'SGA_v2.0_scaffold126G33775' => 'sas', 'SGA_v2.0_scaffold2G01337' => 'sas', 'SGA_v2.0_scaffold38G15006' => 'sas', 'SGA_v2.0_scaffold39G15264' => 'sas', 'SGA_v2.0_scaffold453G51880' => 'sas', 'SHI12696' => 'shi', 'SMO367G1096' => 'smo', 'Solyc01g068630.3' => 'sly', 'Solyc05g011880.3' => 'sly', 'Solyc06g076300.3' => 'sly', 'Solyc09g010940.4' => 'sly', 'Solyc09g075890.3' => 'sly', 'Sopen01g030560' => 'spe', 'Sopen05g006630' => 'spe', 'Sopen06g032720' => 'spe', 'Sopen09g005660' => 'spe', 'Sopen09g030690' => 'spe', 'Sp4g14540' => 'spa', 'Sp4g20030' => 'spa', 'Sp5g01320' => 'spa', 'Sp6g21170' => 'spa', 'Sp6g21180' => 'spa', 'Sp6g21190' => 'spa', 'Sp6g40220' => 'spa', 'TAR362G0122' => 'tar', 'TAR362G1338' => 'tar', 'TAR369G0590' => 'tar', 'TAR371G0824' => 'tar', 'TAR622G1429' => 'tar', 'TAR623G0734' => 'tar', 'TAR625G0441' => 'tar', 'TAR629G0976' => 'tar', 'TAR633G1195' => 'tar', 'TAR636G2660' => 'tar', 'THA.LOC104799440' => 'tha', 'THA.LOC104800966' => 'tha', 'THA.LOC104806559' => 'tha', 'THA.LOC104810765' => 'tha', 'THA.LOC104816266' => 'tha', 'THA.LOC104817419' => 'tha', 'THA.LOC104827021' => 'tha', 'Thecc.01G327400' => 'tca', 'Thecc.04G229200' => 'tca', 'Thecc.05G037400' => 'tca', 'Thecc.09G318600' => 'tca', 'Thecc.09G318700' => 'tca', 'Thhalv10006238m.g' => 'esa', 'Thhalv10014321m.g' => 'esa', 'Thhalv10014335m.g' => 'esa', 'Thhalv10015826m.g' => 'esa', 'Thhalv10017107m.g' => 'esa', 'Thhalv10017180m.g' => 'esa', 'Thhalv10029339m.g' => 'esa', 'TPR.G1699' => 'tpr', 'TPR.G23609' => 'tpr', 'TPR.G3081' => 'tpr', 'TPR.G40397' => 'tpr', 'TPR.G5522' => 'tpr', 'TPR.G5618' => 'tpr', 'TPR.G5626' => 'tpr', 'TWI09G1632' => 'twi', 'TWI23G1230' => 'twi', 'TWI53G1064' => 'twi', 'TWI59G0751' => 'twi', 'TWI74G0947' => 'twi', 'TWI77G0337' => 'twi', 'TWI79G1254' => 'twi', 'unitig_0.g2341' => 'ugi', 'unitig_26.g10006' => 'ugi', 'unitig_26.g10008' => 'ugi', 'unitig_26.g9192' => 'ugi', 'vmacro14547' => 'vma', 'vmacro15333' => 'vma', 'vmacro18743' => 'vma', 'vmacro20166' => 'vma', 'VMungo0331G0523' => 'vmu', 'VMungo0331G1202' => 'vmu', 'VMungo0720G1228' => 'vmu', 'VMungo0720G1514' => 'vmu', 'VMungo1080G0169' => 'vmu', 'VMungo1127G1475' => 'vmu', 'VMungo1383G1208' => 'vmu', 'VMungo1383G1698' => 'vmu', 'Zm00001eb012270' => 'zma', 'Zm00001eb054100' => 'zma', 'Zm00001eb063350' => 'zma', 'Zm00001eb328560' => 'zma', 'Zm00001eb342820' => 'zma', 'Zm00001eb362210' => 'zma', 'Zm00001eb397730' => 'zma', 'Zm00001eb399750' => 'zma' ) $gf_id = 'HOM05D000959' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000959' ) $data_identifier = 'HOM05D000959' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 5, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 5, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 10, 'mbi' => (int) 3, 'mco' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 2, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 3, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 11, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399750' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000959', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '622', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p07100' => 'bna', 'A03p11720' => 'bna', 'A05p08300' => 'bna', 'A05p13380' => 'bna', 'A09p54130' => 'bna', 'A10p16690' => 'bna', 'A10p16700' => 'bna', 'A10p33390' => 'bna', 'Aa31LG10G16020' => 'aar', 'Aa31LG1G11810' => 'aar', 'Aa31LG1G11830' => 'aar', 'Aa31LG1G22510' => 'aar', 'Aa31LG5G4890' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5793' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2310' => 'aag', 'Actinidia08499' => 'ach', 'Actinidia11262' => 'ach', 'Actinidia23926' => 'ach', 'Actinidia34420' => 'ach', 'Actinidia36970' => 'ach', 'Ah.02g111220' => 'amhyb', 'Ah.15g097750' => 'amhyb', 'AL4G27500' => 'aly', 'AL6G11470' => 'aly', 'AL8G35950' => 'aly', 'AL8G35960' => 'aly', 'AL8G35970' => 'aly', 'Aqoxy1G00912' => 'aox', 'Aqoxy2G02253' => 'aox', 'Aqoxy2G02411' => 'aox', 'Aqoxy5G00485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BZ66YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K8ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM4FUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6BF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HFV7XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25JBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0YNNV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MAKK6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P70IT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP2Z6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V61LZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YWP64R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3S9AI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7PGHH' => 'arhy', 'AT2G32150' => 'ath', 'AT3G62040' => 'ath', 'AT5G02230' => 'ath', 'AT5G59480' => 'ath', 'AT5G59490' => 'ath', 'ATR0332G060' => 'atr', 'ATR0559G190' => 'atr', 'ATR0693G294' => 'atr', 'Atru.chr3.3975' => 'acertr', 'Atru.chr3.3976' => 'acertr', 'Atru.chr3.3977' => 'acertr', 'Atru.chr4.2498' => 'acertr', 'Atru.chr5.838' => 'acertr', 'Atru.chr8.1990' => 'acertr', 'Atru.chr8.1991' => 'acertr', 'Atru.chr8.1992' => 'acertr', 'AUR62001759' => 'cqu', 'AUR62009545' => 'cqu', 'AUR62010474' => 'cqu', 'AUR62025820' => 'cqu', 'AUR62030422' => 'cqu', 'AUR62033605' => 'cqu', 'AUR62038615' => 'cqu', 'AUR62041347' => 'cqu', 'BcaB01g04574' => 'bca', 'BcaB02g09263' => 'bca', 'BcaB02g10453' => 'bca', 'BcaB05g22513' => 'bca', 'BcaB08g36253' => 'bca', 'BcaB08g36254' => 'bca', 'BcaC01g06519' => 'bca', 'BcaC02g11889' => 'bca', 'BcaC03g14010' => 'bca', 'BcaC03g18439' => 'bca', 'BcaC04g19765' => 'bca', 'BcaC09g48432' => 'bca', 'BcaNung07302' => 'bca', 'BolC2t06040H' => 'bol', 'BolC2t07346H' => 'bol', 'BolC3t13817H' => 'bol', 'BolC4t22625H' => 'bol', 'BolC4t23297H' => 'bol', 'BolC8t51278H' => 'bol', 'BolC9t58050H' => 'bol', 'BolC9t58051H' => 'bol', 'BolC9t60163H' => 'bol', 'BraA02t04712Z' => 'bra', 'BraA02t05791Z' => 'bra', 'BraA03t10483Z' => 'bra', 'BraA05t19795Z' => 'bra', 'BraA05t20276Z' => 'bra', 'BraA09t40827Z' => 'bra', 'BraA10t43750Z' => 'bra', 'BraA10t43751Z' => 'bra', 'BraA10t45370Z' => 'bra', 'C02p00400' => 'bna', 'C02p12460' => 'bna', 'C03p13680' => 'bna', 'C04p10270' => 'bna', 'C04p17500' => 'bna', 'C08p37010' => 'bna', 'C09p51880' => 'bna', 'C09p51890' => 'bna', 'C09p74300' => 'bna', 'CAN.G179.26' => 'can', 'CAN.G3384.1' => 'can', 'CAN.G394.68' => 'can', 'CAN.G907.13' => 'can', 'CANSAT11G0012' => 'cansat', 'CANSAT25G1586' => 'cansat', 'CANSAT35G0735' => 'cansat', 'CANSAT54G0556' => 'cansat', 'CANSAT64G0356' => 'cansat', 'CANSAT78G2042' => 'cansat', 'CARHR125920' => 'chi', 'CARHR131910' => 'chi', 'CARHR172390' => 'chi', 'CARHR211140' => 'chi', 'CARHR285850' => 'chi', 'CARHR285860' => 'chi', 'Carub.0004s1347' => 'cru', 'Carub.0004s1960' => 'cru', 'Carub.0005s2880' => 'cru', 'Carub.0006s0107' => 'cru', 'Carub.0008s2015' => 'cru', 'Carub.0008s2016' => 'cru', 'Carub.0008s2017' => 'cru', 'Ca_01315_v3' => 'car', 'Ca_05063_v3' => 'car', 'Ca_10231_v3' => 'car', 'Ca_10913_v3' => 'car', 'Ca_19156_v3' => 'car', 'Ca_23644_v3' => 'car', 'Ca_26735_v3' => 'car', 'Cc01_g13130' => 'ccan', 'Cc02_g21690' => 'ccan', 'Cc03_g03600' => 'ccan', 'Cc06_g02510' => 'ccan', 'CDE02G1265' => 'cde', 'CDE05G0415' => 'cde', 'CDE08G1082' => 'cde', 'Cfa005780' => 'cfa', 'Cfa011522' => 'cfa', 'Cfa011523' => 'cfa', 'Cfa015627' => 'cfa', 'Cfa017359' => 'cfa', 'Ciclev10005687m.g' => 'ccl', 'Ciclev10012173m.g' => 'ccl', 'Ciclev10021621m.g' => 'ccl', 'Ciclev10028968m.g' => 'ccl', 'Ciclev10029907m.g' => 'ccl', 'CiPaw.01G164800' => 'cil', 'CiPaw.07G083700' => 'cil', 'CiPaw.07G127000' => 'cil', 'CiPaw.07G136900' => 'cil', 'CiPaw.08G081700' => 'cil', 'CiPaw.09G194600' => 'cil', 'CiPaw.10G146500' => 'cil', 'CiPaw.13G091500' => 'cil', 'CiPaw.13G091600' => 'cil', 'ClCG00G003390' => 'cla', 'ClCG01G007220' => 'cla', 'ClCG03G001370' => 'cla', 'ClCG04G008100' => 'cla', 'ClCG06G006110' => 'cla', 'ClCG06G006130' => 'cla', 'ClCG10G021210' => 'cla', 'COL.COLO4_07648' => 'col', 'COL.COLO4_07650' => 'col', 'COL.COLO4_07651' => 'col', 'COL.COLO4_14780' => 'col', 'COL.COLO4_18546' => 'col', 'COL.COLO4_18547' => 'col', 'COL.COLO4_23103' => 'col', 'COL.COLO4_30419' => 'col', 'COL.COLO4_34232' => 'col', 'Cpa.g.sc169.20' => 'cpa', 'Cpa.g.sc57.45' => 'cpa', 'Cpa.g.sc58.124' => 'cpa', 'Cpa.g.sc58.125' => 'cpa', 'Cpa.g.sc81.118' => 'cpa', 'Cpa.g.sc81.119' => 'cpa', 'Cre12.g524700' => 'cre', 'CsaV3_1G034430' => 'csa', 'CsaV3_1G034440' => 'csa', 'CsaV3_1G034450' => 'csa', 'CsaV3_3G034830' => 'csa', 'CsaV3_4G025090' => 'csa', 'CsaV3_5G018660' => 'csa', 'CsaV3_6G038160' => 'csa', 'CSS0003447' => 'camsi', 'CSS0017840' => 'camsi', 'CSS0019260' => 'camsi', 'CSS0040375' => 'camsi', 'CSS0042533' => 'camsi', 'DCAR_005960' => 'dca', 'DCAR_012104' => 'dca', 'DCAR_012105' => 'dca', 'DCAR_012293' => 'dca', 'DCAR_015632' => 'dca', 'DCAR_024602' => 'dca', 'DCAR_028752' => 'dca', 'Dinv06261' => 'din', 'Dinv13982' => 'din', 'Dinv17029' => 'din', 'Dinv18463' => 'din', 'Dinv33181' => 'din', 'Dinv35585' => 'din', 'Dinv37161' => 'din', 'Dinv42977' => 'din', 'Dinv43122' => 'din', 'Dinv44517' => 'din', 'Duzib093G0256' => 'dzi', 'Duzib106G1254' => 'dzi', 'Duzib128G1789' => 'dzi', 'Duzib133G0633' => 'dzi', 'Duzib138G0510' => 'dzi', 'Duzib150G1084' => 'dzi', 'Duzib168G0488' => 'dzi', 'Duzib168G1523' => 'dzi', 'Duzib170G0133' => 'dzi', 'ECA234G1433' => 'eca', 'ECA236G1432' => 'eca', 'ECA236G2256' => 'eca', 'ECA236G2365' => 'eca', 'ECA236G4830' => 'eca', 'ECA248G1505' => 'eca', 'EL10Ac3g06431' => 'bvu', 'EL10Ac5g12577' => 'bvu', 'EL10Ac6g13533' => 'bvu', 'EL10Ac7g16045' => 'bvu', 'Eucgr.A01281' => 'egr', 'Eucgr.B02326' => 'egr', 'Eucgr.H03532' => 'egr', 'Eucgr.K00553' => 'egr', 'Eucgr.K03116' => 'egr', 'FAN02G3963' => 'fan', 'FAN05G0438' => 'fan', 'FAN09G2434' => 'fan', 'FAN12G3984' => 'fan', 'FAN14G0798' => 'fan', 'FAN17G0652' => 'fan', 'FAN19G1988' => 'fan', 'FAN22G0632' => 'fan', 'FAN23G0387' => 'fan', 'FAN26G1323' => 'fan', 'FAN28G0666' => 'fan', 'FvH4_1g26080' => 'fve', 'FvH4_3g36780' => 'fve', 'FvH4_4g15270' => 'fve', 'FvH4_6g13490' => 'fve', 'Glyma.01G098700' => 'gma', 'Glyma.03G065900' => 'gma', 'Glyma.03G073754' => 'gma', 'Glyma.03G073758' => 'gma', 'Glyma.03G083200' => 'gma', 'Glyma.03G225500' => 'gma', 'Glyma.05G037766' => 'gma', 'Glyma.07G133500' => 'gma', 'Glyma.10G139400' => 'gma', 'Glyma.10G248900' => 'gma', 'Glyma.11G137800' => 'gma', 'Glyma.12G061300' => 'gma', 'Glyma.13G337900' => 'gma', 'Glyma.15G036600' => 'gma', 'Glyma.18G182800' => 'gma', 'Glyma.19G222500' => 'gma', 'Glyma.20G144800' => 'gma', 'Gohir.A01G222000' => 'ghi', 'Gohir.A03G044000' => 'ghi', 'Gohir.A03G044100' => 'ghi', 'Gohir.A04G083100' => 'ghi', 'Gohir.A07G127200' => 'ghi', 'Gohir.A07G132400' => 'ghi', 'Gohir.A08G000700' => 'ghi', 'Gohir.A11G327300' => 'ghi', 'Gohir.D01G211500' => 'ghi', 'Gohir.D03G123400' => 'ghi', 'Gohir.D03G123500' => 'ghi', 'Gohir.D04G121800' => 'ghi', 'Gohir.D07G131500' => 'ghi', 'Gohir.D07G136600' => 'ghi', 'Gohir.D08G011600' => 'ghi', 'Gohir.D11G346200' => 'ghi', 'Gorai.001G142800' => 'gra', 'Gorai.001G148700' => 'gra', 'Gorai.002G257300' => 'gra', 'Gorai.003G130000' => 'gra', 'Gorai.003G130100' => 'gra', 'Gorai.004G005300' => 'gra', 'Gorai.007G376500' => 'gra', 'Gorai.012G104700' => 'gra', 'GSVIVG01017946001' => 'vvi', 'GSVIVG01024928001' => 'vvi', 'GSVIVG01028227001' => 'vvi', 'GSVIVG01034151001' => 'vvi', 'HanXRQChr05g0135031' => 'han', 'HanXRQChr05g0135041' => 'han', 'HanXRQChr05g0140021' => 'han', 'HanXRQChr06g0178981' => 'han', 'HanXRQChr07g0188251' => 'han', 'HanXRQChr08g0235311' => 'han', 'HanXRQChr09g0271011' => 'han', 'HanXRQChr10g0293321' => 'han', 'HanXRQChr13g0388171' => 'han', 'Haze_00916' => 'cav', 'Haze_05063' => 'cav', 'Haze_20814' => 'cav', 'Haze_24128' => 'cav', 'Hma1.2p1_0745F.1_g212010' => 'hma', 'Hma1.2p1_0757F.1_g213260' => 'hma', 'Hma1.2p1_0936F.1_g238840' => 'hma', 'Hma1.2p1_1735F.1_g299890' => 'hma', 'Hma1.2p1_1861F.1_g305685' => 'hma', 'HPP92_003397' => 'vpl', 'HPP92_012597' => 'vpl', 'HPP92_015520' => 'vpl', 'HPP92_015539' => 'vpl', 'HPP92_020373' => 'vpl', 'Hund04938' => 'sun', 'Hund10677' => 'sun', 'Hund11033' => 'sun', 'Hund12155' => 'sun', 'Lalb_Chr01g0022551' => 'lal', 'Lalb_Chr03g0042341' => 'lal', 'Lalb_Chr07g0192931' => 'lal', 'Lalb_Chr12g0209551' => 'lal', 'Lalb_Chr19g0125251' => 'lal', 'Lalb_Chr19g0137891' => 'lal', 'Lalb_Chr21g0304641' => 'lal', 'Lalb_Chr21g0309881' => 'lal', 'Lj1A5T12' => 'lonja', 'Lj1C148G10' => 'lonja', 'Lj2A93T83' => 'lonja', 'Lj3A738G68' => 'lonja', 'Lj3C966T1' => 'lonja', 'Lj3g0018958' => 'lja', 'Lj3g0021831' => 'lja', 'Lj3g0025443' => 'lja', 'Lj4g0026809' => 'lja', 'Lj5g0012558' => 'lja', 'Lj5g0021586' => 'lja', 'Lsat_1_v5_gn_5_156840' => 'lsa', 'Lsat_1_v5_gn_8_73460' => 'lsa', 'Lsat_1_v5_gn_8_73481' => 'lsa', 'Lsat_1_v5_gn_9_31601' => 'lsa', 'Lsat_1_v5_gn_9_77320' => 'lsa', 'Manes.01G171300' => 'mes', 'Manes.01G171400' => 'mes', 'Manes.01G236100' => 'mes', 'Manes.02G130500' => 'mes', 'Manes.02G130600' => 'mes', 'Manes.03G180200' => 'mes', 'Manes.05G007000' => 'mes', 'Manes.08G084400' => 'mes', 'Manes.09G092600' => 'mes', 'Manes.15G027900' => 'mes', 'MBI04_g40948_MAGBIO' => 'mbi', 'MBI14_g12123_MAGBIO' => 'mbi', 'MBI18_g28915_MAGBIO' => 'mbi', 'MCO09G053' => 'mco', 'MCO11G782' => 'mco', 'MCO15G215' => 'mco', 'MD03G1088500' => 'mdo', 'MD03G1088600' => 'mdo', 'MD04G1130800' => 'mdo', 'MD09G1291700' => 'mdo', 'MD11G1097500' => 'mdo', 'MD11G1097600' => 'mdo', 'MD12G1143900' => 'mdo', 'MD13G1191400' => 'mdo', 'MD16G1191500' => 'mdo', 'Medtr1g085570' => 'mtr', 'Medtr1g104610' => 'mtr', 'Medtr2g097520' => 'mtr', 'Medtr4g021800' => 'mtr', 'Medtr4g021825' => 'mtr', 'Medtr4g064270' => 'mtr', 'Medtr4g064380' => 'mtr', 'Medtr7g062150' => 'mtr', 'MELO3C003138.2' => 'cme', 'MELO3C005187.2' => 'cme', 'MELO3C009252.2' => 'cme', 'MELO3C014481.2' => 'cme', 'MELO3C020616.2' => 'cme', 'MELO3C020617.2' => 'cme', 'MELO3C020618.2' => 'cme', 'Migut.G00328' => 'egut', 'Migut.J00320' => 'egut', 'Migut.L01000' => 'egut', 'Migut.L01953' => 'egut', 'MSTRG.10253' => 'ama', 'MSTRG.19077' => 'ama', 'MSTRG.26780' => 'ama', 'MSTRG.4023' => 'ama', 'MSTRG.5655' => 'ama', 'MSTRG.9992' => 'ama', 'Nitab4.5_0000043g0310' => 'nta', 'Nitab4.5_0000463g0080' => 'nta', 'Nitab4.5_0000705g0170' => 'nta', 'Nitab4.5_0001326g0060' => 'nta', 'Nitab4.5_0001628g0030' => 'nta', 'Nitab4.5_0002103g0110' => 'nta', 'Nitab4.5_0002946g0030' => 'nta', 'Nitab4.5_0004639g0030' => 'nta', 'Nn2g11149' => 'nnu', 'Nn2g13389' => 'nnu', 'Nn4g25326' => 'nnu', 'Nn4g26290' => 'nnu', 'Nn5g29865' => 'nnu', 'Oeu004163.1' => 'oeu', 'Oeu006901.1' => 'oeu', 'Oeu010096.1' => 'oeu', 'Oeu024340.1' => 'oeu', 'Oeu048369.1' => 'oeu', 'Os01g0973000' => 'osa', 'Os03g0273800' => 'osa', 'Os03g0701200' => 'osa', 'Os03g0834050' => 'osa', 'Os07g0634400' => 'osa', 'Peaxi162Scf00092g01414' => 'pax', 'Peaxi162Scf00165g00818' => 'pax', 'Peaxi162Scf00309g00516' => 'pax', 'Peaxi162Scf00774g00218' => 'pax', 'PGR004G1824' => 'pgr', 'PGR004G2606' => 'pgr', 'PGR031G2716' => 'pgr', 'PGR102G2460' => 'pgr', 'PGR142G2599' => 'pgr', 'PGSC0003DMG400000843' => 'stu', 'PGSC0003DMG400008829' => 'stu', 'PGSC0003DMG400030418' => 'stu', 'PGSC0003DMG400031834' => 'stu', 'PGSC0003DMG401028300' => 'stu', 'PGSC0003DMG402028300' => 'stu', 'Phvul.001G219300' => 'pvu', 'Phvul.007G056000' => 'pvu', 'Phvul.007G208000' => 'pvu', 'Phvul.008G119500' => 'pvu', 'Phvul.010G011200' => 'pvu', 'Phvul.010G014800' => 'pvu', 'Phvul.011G062900' => 'pvu', 'Phvul.L007043' => 'pvu', 'Potri.001G242300' => 'ptr', 'Potri.002G185300' => 'ptr', 'Potri.006G086900' => 'ptr', 'Potri.008G151700' => 'ptr', 'Potri.009G033500' => 'ptr', 'Potri.010G089300' => 'ptr', 'Potri.014G110800' => 'ptr', 'Pp3c27_8130' => 'ppa', 'Pp3c6_27410' => 'ppa', 'PRCOL_00001659' => 'pco', 'PRCOL_00001927' => 'pco', 'PRCOL_00003649' => 'pco', 'Prupe.1G011600' => 'ppe', 'Prupe.3G000800' => 'ppe', 'Prupe.3G001100' => 'ppe', 'Prupe.6G072700' => 'ppe', 'Prupe.6G072800' => 'ppe', 'Prupe.6G257300' => 'ppe', 'Prupe.8G033000' => 'ppe', 'Psat0s2633g0080' => 'psa', 'Psat0s3396g0080' => 'psa', 'Psat0s3396g0200' => 'psa', 'Psat3g139080' => 'psa', 'Psat5g285080' => 'psa', 'Psat6g157760' => 'psa', 'Psat6g208440' => 'psa', 'Psat7g215320' => 'psa', 'Psat7g215400' => 'psa', 'Psat7g235600' => 'psa', 'Psat7g235760' => 'psa', 'PSO063G4603' => 'pso', 'PSO210G0182' => 'pso', 'PSO210G0196' => 'pso', 'PSO339G0394' => 'pso', 'PSO339G4127' => 'pso', 'PSO513G0064' => 'pso', 'PSO761G0079' => 'pso', 'QL01p031003' => 'qlo', 'QL01p031078' => 'qlo', 'QL06p003004' => 'qlo', 'QL07p048731' => 'qlo', 'QL09p037427' => 'qlo', 'RcHm_v2.0_Chr3g0466361' => 'rch', 'RcHm_v2.0_Chr3g0485571' => 'rch', 'RcHm_v2.0_Chr4g0416551' => 'rch', 'RcHm_v2.0_Chr5g0065831' => 'rch', 'Rhsim01G0230500' => 'rsi', 'Rhsim05G0194000' => 'rsi', 'Rhsim08G0250400' => 'rsi', 'Sabra02G0131000' => 'sbr', 'Sabra06G0066300' => 'sbr', 'Sabra08G0115500' => 'sbr', 'Sabra09G0023900' => 'sbr', 'Sabra10G0054000' => 'sbr', 'Sabra14G0081500' => 'sbr', 'Sabra16G0147100' => 'sbr', 'SalBow2G2957' => 'sbo', 'SalBow4G3320' => 'sbo', 'SalBow8G1894' => 'sbo', 'Sc07g0007950' => 'sci', 'Sc12g0001360' => 'sci', 'Sc13g0004330' => 'sci', 'Sc20g0005010' => 'sci', 'Sed0000361' => 'sed', 'Sed0001706' => 'sed', 'Sed0002422' => 'sed', 'Sed0004029' => 'sed', 'Sed0004602' => 'sed', 'Sed0004943' => 'sed', 'Sed0008646' => 'sed', 'Sed0023313' => 'sed', 'Sed0024843' => 'sed', 'SEGI_00081' => 'sgi', 'SEGI_00947' => 'sgi', 'SEGI_04046' => 'sgi', 'SEGI_06880' => 'sgi', 'SEGI_09736' => 'sgi', 'SEGI_12741' => 'sgi', 'SEGI_14530' => 'sgi', 'SEGI_20705' => 'sgi', 'SEGI_26088' => 'sgi', 'SEGI_28323' => 'sgi', 'SEGI_33343' => 'sgi', 'SGA_v2.0_scaffold126G33775' => 'sas', 'SGA_v2.0_scaffold2G01337' => 'sas', 'SGA_v2.0_scaffold38G15006' => 'sas', 'SGA_v2.0_scaffold39G15264' => 'sas', 'SGA_v2.0_scaffold453G51880' => 'sas', 'SHI12696' => 'shi', 'SMO367G1096' => 'smo', 'Solyc01g068630.3' => 'sly', 'Solyc05g011880.3' => 'sly', 'Solyc06g076300.3' => 'sly', 'Solyc09g010940.4' => 'sly', 'Solyc09g075890.3' => 'sly', 'Sopen01g030560' => 'spe', 'Sopen05g006630' => 'spe', 'Sopen06g032720' => 'spe', 'Sopen09g005660' => 'spe', 'Sopen09g030690' => 'spe', 'Sp4g14540' => 'spa', 'Sp4g20030' => 'spa', 'Sp5g01320' => 'spa', 'Sp6g21170' => 'spa', 'Sp6g21180' => 'spa', 'Sp6g21190' => 'spa', 'Sp6g40220' => 'spa', 'TAR362G0122' => 'tar', 'TAR362G1338' => 'tar', 'TAR369G0590' => 'tar', 'TAR371G0824' => 'tar', 'TAR622G1429' => 'tar', 'TAR623G0734' => 'tar', 'TAR625G0441' => 'tar', 'TAR629G0976' => 'tar', 'TAR633G1195' => 'tar', 'TAR636G2660' => 'tar', 'THA.LOC104799440' => 'tha', 'THA.LOC104800966' => 'tha', 'THA.LOC104806559' => 'tha', 'THA.LOC104810765' => 'tha', 'THA.LOC104816266' => 'tha', 'THA.LOC104817419' => 'tha', 'THA.LOC104827021' => 'tha', 'Thecc.01G327400' => 'tca', 'Thecc.04G229200' => 'tca', 'Thecc.05G037400' => 'tca', 'Thecc.09G318600' => 'tca', 'Thecc.09G318700' => 'tca', 'Thhalv10006238m.g' => 'esa', 'Thhalv10014321m.g' => 'esa', 'Thhalv10014335m.g' => 'esa', 'Thhalv10015826m.g' => 'esa', 'Thhalv10017107m.g' => 'esa', 'Thhalv10017180m.g' => 'esa', 'Thhalv10029339m.g' => 'esa', 'TPR.G1699' => 'tpr', 'TPR.G23609' => 'tpr', 'TPR.G3081' => 'tpr', 'TPR.G40397' => 'tpr', 'TPR.G5522' => 'tpr', 'TPR.G5618' => 'tpr', 'TPR.G5626' => 'tpr', 'TWI09G1632' => 'twi', 'TWI23G1230' => 'twi', 'TWI53G1064' => 'twi', 'TWI59G0751' => 'twi', 'TWI74G0947' => 'twi', 'TWI77G0337' => 'twi', 'TWI79G1254' => 'twi', 'unitig_0.g2341' => 'ugi', 'unitig_26.g10006' => 'ugi', 'unitig_26.g10008' => 'ugi', 'unitig_26.g9192' => 'ugi', 'vmacro14547' => 'vma', 'vmacro15333' => 'vma', 'vmacro18743' => 'vma', 'vmacro20166' => 'vma', 'VMungo0331G0523' => 'vmu', 'VMungo0331G1202' => 'vmu', 'VMungo0720G1228' => 'vmu', 'VMungo0720G1514' => 'vmu', 'VMungo1080G0169' => 'vmu', 'VMungo1127G1475' => 'vmu', 'VMungo1383G1208' => 'vmu', 'VMungo1383G1698' => 'vmu', 'Zm00001eb012270' => 'zma', 'Zm00001eb054100' => 'zma', 'Zm00001eb063350' => 'zma', 'Zm00001eb328560' => 'zma', 'Zm00001eb342820' => 'zma', 'Zm00001eb362210' => 'zma', 'Zm00001eb397730' => 'zma', 'Zm00001eb399750' => 'zma' ), 'gf_id' => 'HOM05D000959', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000959' ), 'data_identifier' => 'HOM05D000959', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000959', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '622', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p07100' => 'bna', 'A03p11720' => 'bna', 'A05p08300' => 'bna', 'A05p13380' => 'bna', 'A09p54130' => 'bna', 'A10p16690' => 'bna', 'A10p16700' => 'bna', 'A10p33390' => 'bna', 'Aa31LG10G16020' => 'aar', 'Aa31LG1G11810' => 'aar', 'Aa31LG1G11830' => 'aar', 'Aa31LG1G22510' => 'aar', 'Aa31LG5G4890' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5793' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2310' => 'aag', 'Actinidia08499' => 'ach', 'Actinidia11262' => 'ach', 'Actinidia23926' => 'ach', 'Actinidia34420' => 'ach', 'Actinidia36970' => 'ach', 'Ah.02g111220' => 'amhyb', 'Ah.15g097750' => 'amhyb', 'AL4G27500' => 'aly', 'AL6G11470' => 'aly', 'AL8G35950' => 'aly', 'AL8G35960' => 'aly', 'AL8G35970' => 'aly', 'Aqoxy1G00912' => 'aox', 'Aqoxy2G02253' => 'aox', 'Aqoxy2G02411' => 'aox', 'Aqoxy5G00485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BZ66YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K8ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM4FUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6BF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HFV7XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25JBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0YNNV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MAKK6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P70IT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP2Z6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V61LZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YWP64R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3S9AI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7PGHH' => 'arhy', 'AT2G32150' => 'ath', 'AT3G62040' => 'ath', 'AT5G02230' => 'ath', 'AT5G59480' => 'ath', 'AT5G59490' => 'ath', 'ATR0332G060' => 'atr', 'ATR0559G190' => 'atr', 'ATR0693G294' => 'atr', 'Atru.chr3.3975' => 'acertr', 'Atru.chr3.3976' => 'acertr', 'Atru.chr3.3977' => 'acertr', 'Atru.chr4.2498' => 'acertr', 'Atru.chr5.838' => 'acertr', 'Atru.chr8.1990' => 'acertr', 'Atru.chr8.1991' => 'acertr', 'Atru.chr8.1992' => 'acertr', 'AUR62001759' => 'cqu', 'AUR62009545' => 'cqu', 'AUR62010474' => 'cqu', 'AUR62025820' => 'cqu', 'AUR62030422' => 'cqu', 'AUR62033605' => 'cqu', 'AUR62038615' => 'cqu', 'AUR62041347' => 'cqu', 'BcaB01g04574' => 'bca', 'BcaB02g09263' => 'bca', 'BcaB02g10453' => 'bca', 'BcaB05g22513' => 'bca', 'BcaB08g36253' => 'bca', 'BcaB08g36254' => 'bca', 'BcaC01g06519' => 'bca', 'BcaC02g11889' => 'bca', 'BcaC03g14010' => 'bca', 'BcaC03g18439' => 'bca', 'BcaC04g19765' => 'bca', 'BcaC09g48432' => 'bca', 'BcaNung07302' => 'bca', 'BolC2t06040H' => 'bol', 'BolC2t07346H' => 'bol', 'BolC3t13817H' => 'bol', 'BolC4t22625H' => 'bol', 'BolC4t23297H' => 'bol', 'BolC8t51278H' => 'bol', 'BolC9t58050H' => 'bol', 'BolC9t58051H' => 'bol', 'BolC9t60163H' => 'bol', 'BraA02t04712Z' => 'bra', 'BraA02t05791Z' => 'bra', 'BraA03t10483Z' => 'bra', 'BraA05t19795Z' => 'bra', 'BraA05t20276Z' => 'bra', 'BraA09t40827Z' => 'bra', 'BraA10t43750Z' => 'bra', 'BraA10t43751Z' => 'bra', 'BraA10t45370Z' => 'bra', 'C02p00400' => 'bna', 'C02p12460' => 'bna', 'C03p13680' => 'bna', 'C04p10270' => 'bna', 'C04p17500' => 'bna', 'C08p37010' => 'bna', 'C09p51880' => 'bna', 'C09p51890' => 'bna', 'C09p74300' => 'bna', 'CAN.G179.26' => 'can', 'CAN.G3384.1' => 'can', 'CAN.G394.68' => 'can', 'CAN.G907.13' => 'can', 'CANSAT11G0012' => 'cansat', 'CANSAT25G1586' => 'cansat', 'CANSAT35G0735' => 'cansat', 'CANSAT54G0556' => 'cansat', 'CANSAT64G0356' => 'cansat', 'CANSAT78G2042' => 'cansat', 'CARHR125920' => 'chi', 'CARHR131910' => 'chi', 'CARHR172390' => 'chi', 'CARHR211140' => 'chi', 'CARHR285850' => 'chi', 'CARHR285860' => 'chi', 'Carub.0004s1347' => 'cru', 'Carub.0004s1960' => 'cru', 'Carub.0005s2880' => 'cru', 'Carub.0006s0107' => 'cru', 'Carub.0008s2015' => 'cru', 'Carub.0008s2016' => 'cru', 'Carub.0008s2017' => 'cru', 'Ca_01315_v3' => 'car', 'Ca_05063_v3' => 'car', 'Ca_10231_v3' => 'car', 'Ca_10913_v3' => 'car', 'Ca_19156_v3' => 'car', 'Ca_23644_v3' => 'car', 'Ca_26735_v3' => 'car', 'Cc01_g13130' => 'ccan', 'Cc02_g21690' => 'ccan', 'Cc03_g03600' => 'ccan', 'Cc06_g02510' => 'ccan', 'CDE02G1265' => 'cde', 'CDE05G0415' => 'cde', 'CDE08G1082' => 'cde', 'Cfa005780' => 'cfa', 'Cfa011522' => 'cfa', 'Cfa011523' => 'cfa', 'Cfa015627' => 'cfa', 'Cfa017359' => 'cfa', 'Ciclev10005687m.g' => 'ccl', 'Ciclev10012173m.g' => 'ccl', 'Ciclev10021621m.g' => 'ccl', 'Ciclev10028968m.g' => 'ccl', 'Ciclev10029907m.g' => 'ccl', 'CiPaw.01G164800' => 'cil', 'CiPaw.07G083700' => 'cil', 'CiPaw.07G127000' => 'cil', 'CiPaw.07G136900' => 'cil', 'CiPaw.08G081700' => 'cil', 'CiPaw.09G194600' => 'cil', 'CiPaw.10G146500' => 'cil', 'CiPaw.13G091500' => 'cil', 'CiPaw.13G091600' => 'cil', 'ClCG00G003390' => 'cla', 'ClCG01G007220' => 'cla', 'ClCG03G001370' => 'cla', 'ClCG04G008100' => 'cla', 'ClCG06G006110' => 'cla', 'ClCG06G006130' => 'cla', 'ClCG10G021210' => 'cla', 'COL.COLO4_07648' => 'col', 'COL.COLO4_07650' => 'col', 'COL.COLO4_07651' => 'col', 'COL.COLO4_14780' => 'col', 'COL.COLO4_18546' => 'col', 'COL.COLO4_18547' => 'col', 'COL.COLO4_23103' => 'col', 'COL.COLO4_30419' => 'col', 'COL.COLO4_34232' => 'col', 'Cpa.g.sc169.20' => 'cpa', 'Cpa.g.sc57.45' => 'cpa', 'Cpa.g.sc58.124' => 'cpa', 'Cpa.g.sc58.125' => 'cpa', 'Cpa.g.sc81.118' => 'cpa', 'Cpa.g.sc81.119' => 'cpa', 'Cre12.g524700' => 'cre', 'CsaV3_1G034430' => 'csa', 'CsaV3_1G034440' => 'csa', 'CsaV3_1G034450' => 'csa', 'CsaV3_3G034830' => 'csa', 'CsaV3_4G025090' => 'csa', 'CsaV3_5G018660' => 'csa', 'CsaV3_6G038160' => 'csa', 'CSS0003447' => 'camsi', 'CSS0017840' => 'camsi', 'CSS0019260' => 'camsi', 'CSS0040375' => 'camsi', 'CSS0042533' => 'camsi', 'DCAR_005960' => 'dca', 'DCAR_012104' => 'dca', 'DCAR_012105' => 'dca', 'DCAR_012293' => 'dca', 'DCAR_015632' => 'dca', 'DCAR_024602' => 'dca', 'DCAR_028752' => 'dca', 'Dinv06261' => 'din', 'Dinv13982' => 'din', 'Dinv17029' => 'din', 'Dinv18463' => 'din', 'Dinv33181' => 'din', 'Dinv35585' => 'din', 'Dinv37161' => 'din', 'Dinv42977' => 'din', 'Dinv43122' => 'din', 'Dinv44517' => 'din', 'Duzib093G0256' => 'dzi', 'Duzib106G1254' => 'dzi', 'Duzib128G1789' => 'dzi', 'Duzib133G0633' => 'dzi', 'Duzib138G0510' => 'dzi', 'Duzib150G1084' => 'dzi', 'Duzib168G0488' => 'dzi', 'Duzib168G1523' => 'dzi', 'Duzib170G0133' => 'dzi', 'ECA234G1433' => 'eca', 'ECA236G1432' => 'eca', 'ECA236G2256' => 'eca', 'ECA236G2365' => 'eca', 'ECA236G4830' => 'eca', 'ECA248G1505' => 'eca', 'EL10Ac3g06431' => 'bvu', 'EL10Ac5g12577' => 'bvu', 'EL10Ac6g13533' => 'bvu', 'EL10Ac7g16045' => 'bvu', 'Eucgr.A01281' => 'egr', 'Eucgr.B02326' => 'egr', 'Eucgr.H03532' => 'egr', 'Eucgr.K00553' => 'egr', 'Eucgr.K03116' => 'egr', 'FAN02G3963' => 'fan', 'FAN05G0438' => 'fan', 'FAN09G2434' => 'fan', 'FAN12G3984' => 'fan', 'FAN14G0798' => 'fan', 'FAN17G0652' => 'fan', 'FAN19G1988' => 'fan', 'FAN22G0632' => 'fan', 'FAN23G0387' => 'fan', 'FAN26G1323' => 'fan', 'FAN28G0666' => 'fan', 'FvH4_1g26080' => 'fve', 'FvH4_3g36780' => 'fve', 'FvH4_4g15270' => 'fve', 'FvH4_6g13490' => 'fve', 'Glyma.01G098700' => 'gma', 'Glyma.03G065900' => 'gma', 'Glyma.03G073754' => 'gma', 'Glyma.03G073758' => 'gma', 'Glyma.03G083200' => 'gma', 'Glyma.03G225500' => 'gma', 'Glyma.05G037766' => 'gma', 'Glyma.07G133500' => 'gma', 'Glyma.10G139400' => 'gma', 'Glyma.10G248900' => 'gma', 'Glyma.11G137800' => 'gma', 'Glyma.12G061300' => 'gma', 'Glyma.13G337900' => 'gma', 'Glyma.15G036600' => 'gma', 'Glyma.18G182800' => 'gma', 'Glyma.19G222500' => 'gma', 'Glyma.20G144800' => 'gma', 'Gohir.A01G222000' => 'ghi', 'Gohir.A03G044000' => 'ghi', 'Gohir.A03G044100' => 'ghi', 'Gohir.A04G083100' => 'ghi', 'Gohir.A07G127200' => 'ghi', 'Gohir.A07G132400' => 'ghi', 'Gohir.A08G000700' => 'ghi', 'Gohir.A11G327300' => 'ghi', 'Gohir.D01G211500' => 'ghi', 'Gohir.D03G123400' => 'ghi', 'Gohir.D03G123500' => 'ghi', 'Gohir.D04G121800' => 'ghi', 'Gohir.D07G131500' => 'ghi', 'Gohir.D07G136600' => 'ghi', 'Gohir.D08G011600' => 'ghi', 'Gohir.D11G346200' => 'ghi', 'Gorai.001G142800' => 'gra', 'Gorai.001G148700' => 'gra', 'Gorai.002G257300' => 'gra', 'Gorai.003G130000' => 'gra', 'Gorai.003G130100' => 'gra', 'Gorai.004G005300' => 'gra', 'Gorai.007G376500' => 'gra', 'Gorai.012G104700' => 'gra', 'GSVIVG01017946001' => 'vvi', 'GSVIVG01024928001' => 'vvi', 'GSVIVG01028227001' => 'vvi', 'GSVIVG01034151001' => 'vvi', 'HanXRQChr05g0135031' => 'han', 'HanXRQChr05g0135041' => 'han', 'HanXRQChr05g0140021' => 'han', 'HanXRQChr06g0178981' => 'han', 'HanXRQChr07g0188251' => 'han', 'HanXRQChr08g0235311' => 'han', 'HanXRQChr09g0271011' => 'han', 'HanXRQChr10g0293321' => 'han', 'HanXRQChr13g0388171' => 'han', 'Haze_00916' => 'cav', 'Haze_05063' => 'cav', 'Haze_20814' => 'cav', 'Haze_24128' => 'cav', 'Hma1.2p1_0745F.1_g212010' => 'hma', 'Hma1.2p1_0757F.1_g213260' => 'hma', 'Hma1.2p1_0936F.1_g238840' => 'hma', 'Hma1.2p1_1735F.1_g299890' => 'hma', 'Hma1.2p1_1861F.1_g305685' => 'hma', 'HPP92_003397' => 'vpl', 'HPP92_012597' => 'vpl', 'HPP92_015520' => 'vpl', 'HPP92_015539' => 'vpl', 'HPP92_020373' => 'vpl', 'Hund04938' => 'sun', 'Hund10677' => 'sun', 'Hund11033' => 'sun', 'Hund12155' => 'sun', 'Lalb_Chr01g0022551' => 'lal', 'Lalb_Chr03g0042341' => 'lal', 'Lalb_Chr07g0192931' => 'lal', 'Lalb_Chr12g0209551' => 'lal', 'Lalb_Chr19g0125251' => 'lal', 'Lalb_Chr19g0137891' => 'lal', 'Lalb_Chr21g0304641' => 'lal', 'Lalb_Chr21g0309881' => 'lal', 'Lj1A5T12' => 'lonja', 'Lj1C148G10' => 'lonja', 'Lj2A93T83' => 'lonja', 'Lj3A738G68' => 'lonja', 'Lj3C966T1' => 'lonja', 'Lj3g0018958' => 'lja', 'Lj3g0021831' => 'lja', 'Lj3g0025443' => 'lja', 'Lj4g0026809' => 'lja', 'Lj5g0012558' => 'lja', 'Lj5g0021586' => 'lja', 'Lsat_1_v5_gn_5_156840' => 'lsa', 'Lsat_1_v5_gn_8_73460' => 'lsa', 'Lsat_1_v5_gn_8_73481' => 'lsa', 'Lsat_1_v5_gn_9_31601' => 'lsa', 'Lsat_1_v5_gn_9_77320' => 'lsa', 'Manes.01G171300' => 'mes', 'Manes.01G171400' => 'mes', 'Manes.01G236100' => 'mes', 'Manes.02G130500' => 'mes', 'Manes.02G130600' => 'mes', 'Manes.03G180200' => 'mes', 'Manes.05G007000' => 'mes', 'Manes.08G084400' => 'mes', 'Manes.09G092600' => 'mes', 'Manes.15G027900' => 'mes', 'MBI04_g40948_MAGBIO' => 'mbi', 'MBI14_g12123_MAGBIO' => 'mbi', 'MBI18_g28915_MAGBIO' => 'mbi', 'MCO09G053' => 'mco', 'MCO11G782' => 'mco', 'MCO15G215' => 'mco', 'MD03G1088500' => 'mdo', 'MD03G1088600' => 'mdo', 'MD04G1130800' => 'mdo', 'MD09G1291700' => 'mdo', 'MD11G1097500' => 'mdo', 'MD11G1097600' => 'mdo', 'MD12G1143900' => 'mdo', 'MD13G1191400' => 'mdo', 'MD16G1191500' => 'mdo', 'Medtr1g085570' => 'mtr', 'Medtr1g104610' => 'mtr', 'Medtr2g097520' => 'mtr', 'Medtr4g021800' => 'mtr', 'Medtr4g021825' => 'mtr', 'Medtr4g064270' => 'mtr', 'Medtr4g064380' => 'mtr', 'Medtr7g062150' => 'mtr', 'MELO3C003138.2' => 'cme', 'MELO3C005187.2' => 'cme', 'MELO3C009252.2' => 'cme', 'MELO3C014481.2' => 'cme', 'MELO3C020616.2' => 'cme', 'MELO3C020617.2' => 'cme', 'MELO3C020618.2' => 'cme', 'Migut.G00328' => 'egut', 'Migut.J00320' => 'egut', 'Migut.L01000' => 'egut', 'Migut.L01953' => 'egut', 'MSTRG.10253' => 'ama', 'MSTRG.19077' => 'ama', 'MSTRG.26780' => 'ama', 'MSTRG.4023' => 'ama', 'MSTRG.5655' => 'ama', 'MSTRG.9992' => 'ama', 'Nitab4.5_0000043g0310' => 'nta', 'Nitab4.5_0000463g0080' => 'nta', 'Nitab4.5_0000705g0170' => 'nta', 'Nitab4.5_0001326g0060' => 'nta', 'Nitab4.5_0001628g0030' => 'nta', 'Nitab4.5_0002103g0110' => 'nta', 'Nitab4.5_0002946g0030' => 'nta', 'Nitab4.5_0004639g0030' => 'nta', 'Nn2g11149' => 'nnu', 'Nn2g13389' => 'nnu', 'Nn4g25326' => 'nnu', 'Nn4g26290' => 'nnu', 'Nn5g29865' => 'nnu', 'Oeu004163.1' => 'oeu', 'Oeu006901.1' => 'oeu', 'Oeu010096.1' => 'oeu', 'Oeu024340.1' => 'oeu', 'Oeu048369.1' => 'oeu', 'Os01g0973000' => 'osa', 'Os03g0273800' => 'osa', 'Os03g0701200' => 'osa', 'Os03g0834050' => 'osa', 'Os07g0634400' => 'osa', 'Peaxi162Scf00092g01414' => 'pax', 'Peaxi162Scf00165g00818' => 'pax', 'Peaxi162Scf00309g00516' => 'pax', 'Peaxi162Scf00774g00218' => 'pax', 'PGR004G1824' => 'pgr', 'PGR004G2606' => 'pgr', 'PGR031G2716' => 'pgr', 'PGR102G2460' => 'pgr', 'PGR142G2599' => 'pgr', 'PGSC0003DMG400000843' => 'stu', 'PGSC0003DMG400008829' => 'stu', 'PGSC0003DMG400030418' => 'stu', 'PGSC0003DMG400031834' => 'stu', 'PGSC0003DMG401028300' => 'stu', 'PGSC0003DMG402028300' => 'stu', 'Phvul.001G219300' => 'pvu', 'Phvul.007G056000' => 'pvu', 'Phvul.007G208000' => 'pvu', 'Phvul.008G119500' => 'pvu', 'Phvul.010G011200' => 'pvu', 'Phvul.010G014800' => 'pvu', 'Phvul.011G062900' => 'pvu', 'Phvul.L007043' => 'pvu', 'Potri.001G242300' => 'ptr', 'Potri.002G185300' => 'ptr', 'Potri.006G086900' => 'ptr', 'Potri.008G151700' => 'ptr', 'Potri.009G033500' => 'ptr', 'Potri.010G089300' => 'ptr', 'Potri.014G110800' => 'ptr', 'Pp3c27_8130' => 'ppa', 'Pp3c6_27410' => 'ppa', 'PRCOL_00001659' => 'pco', 'PRCOL_00001927' => 'pco', 'PRCOL_00003649' => 'pco', 'Prupe.1G011600' => 'ppe', 'Prupe.3G000800' => 'ppe', 'Prupe.3G001100' => 'ppe', 'Prupe.6G072700' => 'ppe', 'Prupe.6G072800' => 'ppe', 'Prupe.6G257300' => 'ppe', 'Prupe.8G033000' => 'ppe', 'Psat0s2633g0080' => 'psa', 'Psat0s3396g0080' => 'psa', 'Psat0s3396g0200' => 'psa', 'Psat3g139080' => 'psa', 'Psat5g285080' => 'psa', 'Psat6g157760' => 'psa', 'Psat6g208440' => 'psa', 'Psat7g215320' => 'psa', 'Psat7g215400' => 'psa', 'Psat7g235600' => 'psa', 'Psat7g235760' => 'psa', 'PSO063G4603' => 'pso', 'PSO210G0182' => 'pso', 'PSO210G0196' => 'pso', 'PSO339G0394' => 'pso', 'PSO339G4127' => 'pso', 'PSO513G0064' => 'pso', 'PSO761G0079' => 'pso', 'QL01p031003' => 'qlo', 'QL01p031078' => 'qlo', 'QL06p003004' => 'qlo', 'QL07p048731' => 'qlo', 'QL09p037427' => 'qlo', 'RcHm_v2.0_Chr3g0466361' => 'rch', 'RcHm_v2.0_Chr3g0485571' => 'rch', 'RcHm_v2.0_Chr4g0416551' => 'rch', 'RcHm_v2.0_Chr5g0065831' => 'rch', 'Rhsim01G0230500' => 'rsi', 'Rhsim05G0194000' => 'rsi', 'Rhsim08G0250400' => 'rsi', 'Sabra02G0131000' => 'sbr', 'Sabra06G0066300' => 'sbr', 'Sabra08G0115500' => 'sbr', 'Sabra09G0023900' => 'sbr', 'Sabra10G0054000' => 'sbr', 'Sabra14G0081500' => 'sbr', 'Sabra16G0147100' => 'sbr', 'SalBow2G2957' => 'sbo', 'SalBow4G3320' => 'sbo', 'SalBow8G1894' => 'sbo', 'Sc07g0007950' => 'sci', 'Sc12g0001360' => 'sci', 'Sc13g0004330' => 'sci', 'Sc20g0005010' => 'sci', 'Sed0000361' => 'sed', 'Sed0001706' => 'sed', 'Sed0002422' => 'sed', 'Sed0004029' => 'sed', 'Sed0004602' => 'sed', 'Sed0004943' => 'sed', 'Sed0008646' => 'sed', 'Sed0023313' => 'sed', 'Sed0024843' => 'sed', 'SEGI_00081' => 'sgi', 'SEGI_00947' => 'sgi', 'SEGI_04046' => 'sgi', 'SEGI_06880' => 'sgi', 'SEGI_09736' => 'sgi', 'SEGI_12741' => 'sgi', 'SEGI_14530' => 'sgi', 'SEGI_20705' => 'sgi', 'SEGI_26088' => 'sgi', 'SEGI_28323' => 'sgi', 'SEGI_33343' => 'sgi', 'SGA_v2.0_scaffold126G33775' => 'sas', 'SGA_v2.0_scaffold2G01337' => 'sas', 'SGA_v2.0_scaffold38G15006' => 'sas', 'SGA_v2.0_scaffold39G15264' => 'sas', 'SGA_v2.0_scaffold453G51880' => 'sas', 'SHI12696' => 'shi', 'SMO367G1096' => 'smo', 'Solyc01g068630.3' => 'sly', 'Solyc05g011880.3' => 'sly', 'Solyc06g076300.3' => 'sly', 'Solyc09g010940.4' => 'sly', 'Solyc09g075890.3' => 'sly', 'Sopen01g030560' => 'spe', 'Sopen05g006630' => 'spe', 'Sopen06g032720' => 'spe', 'Sopen09g005660' => 'spe', 'Sopen09g030690' => 'spe', 'Sp4g14540' => 'spa', 'Sp4g20030' => 'spa', 'Sp5g01320' => 'spa', 'Sp6g21170' => 'spa', 'Sp6g21180' => 'spa', 'Sp6g21190' => 'spa', 'Sp6g40220' => 'spa', 'TAR362G0122' => 'tar', 'TAR362G1338' => 'tar', 'TAR369G0590' => 'tar', 'TAR371G0824' => 'tar', 'TAR622G1429' => 'tar', 'TAR623G0734' => 'tar', 'TAR625G0441' => 'tar', 'TAR629G0976' => 'tar', 'TAR633G1195' => 'tar', 'TAR636G2660' => 'tar', 'THA.LOC104799440' => 'tha', 'THA.LOC104800966' => 'tha', 'THA.LOC104806559' => 'tha', 'THA.LOC104810765' => 'tha', 'THA.LOC104816266' => 'tha', 'THA.LOC104817419' => 'tha', 'THA.LOC104827021' => 'tha', 'Thecc.01G327400' => 'tca', 'Thecc.04G229200' => 'tca', 'Thecc.05G037400' => 'tca', 'Thecc.09G318600' => 'tca', 'Thecc.09G318700' => 'tca', 'Thhalv10006238m.g' => 'esa', 'Thhalv10014321m.g' => 'esa', 'Thhalv10014335m.g' => 'esa', 'Thhalv10015826m.g' => 'esa', 'Thhalv10017107m.g' => 'esa', 'Thhalv10017180m.g' => 'esa', 'Thhalv10029339m.g' => 'esa', 'TPR.G1699' => 'tpr', 'TPR.G23609' => 'tpr', 'TPR.G3081' => 'tpr', 'TPR.G40397' => 'tpr', 'TPR.G5522' => 'tpr', 'TPR.G5618' => 'tpr', 'TPR.G5626' => 'tpr', 'TWI09G1632' => 'twi', 'TWI23G1230' => 'twi', 'TWI53G1064' => 'twi', 'TWI59G0751' => 'twi', 'TWI74G0947' => 'twi', 'TWI77G0337' => 'twi', 'TWI79G1254' => 'twi', 'unitig_0.g2341' => 'ugi', 'unitig_26.g10006' => 'ugi', 'unitig_26.g10008' => 'ugi', 'unitig_26.g9192' => 'ugi', 'vmacro14547' => 'vma', 'vmacro15333' => 'vma', 'vmacro18743' => 'vma', 'vmacro20166' => 'vma', 'VMungo0331G0523' => 'vmu', 'VMungo0331G1202' => 'vmu', 'VMungo0720G1228' => 'vmu', 'VMungo0720G1514' => 'vmu', 'VMungo1080G0169' => 'vmu', 'VMungo1127G1475' => 'vmu', 'VMungo1383G1208' => 'vmu', 'VMungo1383G1698' => 'vmu', 'Zm00001eb012270' => 'zma', 'Zm00001eb054100' => 'zma', 'Zm00001eb063350' => 'zma', 'Zm00001eb328560' => 'zma', 'Zm00001eb342820' => 'zma', 'Zm00001eb362210' => 'zma', 'Zm00001eb397730' => 'zma', 'Zm00001eb399750' => 'zma' ) $gf_id = 'HOM05D000959' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000959' ) $data_identifier = 'HOM05D000959' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 5, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 5, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 10, 'mbi' => (int) 3, 'mco' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 2, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 3, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 11, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399750' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000959', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '622', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p07100' => 'bna', 'A03p11720' => 'bna', 'A05p08300' => 'bna', 'A05p13380' => 'bna', 'A09p54130' => 'bna', 'A10p16690' => 'bna', 'A10p16700' => 'bna', 'A10p33390' => 'bna', 'Aa31LG10G16020' => 'aar', 'Aa31LG1G11810' => 'aar', 'Aa31LG1G11830' => 'aar', 'Aa31LG1G22510' => 'aar', 'Aa31LG5G4890' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5793' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2310' => 'aag', 'Actinidia08499' => 'ach', 'Actinidia11262' => 'ach', 'Actinidia23926' => 'ach', 'Actinidia34420' => 'ach', 'Actinidia36970' => 'ach', 'Ah.02g111220' => 'amhyb', 'Ah.15g097750' => 'amhyb', 'AL4G27500' => 'aly', 'AL6G11470' => 'aly', 'AL8G35950' => 'aly', 'AL8G35960' => 'aly', 'AL8G35970' => 'aly', 'Aqoxy1G00912' => 'aox', 'Aqoxy2G02253' => 'aox', 'Aqoxy2G02411' => 'aox', 'Aqoxy5G00485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BZ66YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K8ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM4FUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6BF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HFV7XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25JBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0YNNV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MAKK6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P70IT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP2Z6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V61LZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YWP64R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3S9AI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7PGHH' => 'arhy', 'AT2G32150' => 'ath', 'AT3G62040' => 'ath', 'AT5G02230' => 'ath', 'AT5G59480' => 'ath', 'AT5G59490' => 'ath', 'ATR0332G060' => 'atr', 'ATR0559G190' => 'atr', 'ATR0693G294' => 'atr', 'Atru.chr3.3975' => 'acertr', 'Atru.chr3.3976' => 'acertr', 'Atru.chr3.3977' => 'acertr', 'Atru.chr4.2498' => 'acertr', 'Atru.chr5.838' => 'acertr', 'Atru.chr8.1990' => 'acertr', 'Atru.chr8.1991' => 'acertr', 'Atru.chr8.1992' => 'acertr', 'AUR62001759' => 'cqu', 'AUR62009545' => 'cqu', 'AUR62010474' => 'cqu', 'AUR62025820' => 'cqu', 'AUR62030422' => 'cqu', 'AUR62033605' => 'cqu', 'AUR62038615' => 'cqu', 'AUR62041347' => 'cqu', 'BcaB01g04574' => 'bca', 'BcaB02g09263' => 'bca', 'BcaB02g10453' => 'bca', 'BcaB05g22513' => 'bca', 'BcaB08g36253' => 'bca', 'BcaB08g36254' => 'bca', 'BcaC01g06519' => 'bca', 'BcaC02g11889' => 'bca', 'BcaC03g14010' => 'bca', 'BcaC03g18439' => 'bca', 'BcaC04g19765' => 'bca', 'BcaC09g48432' => 'bca', 'BcaNung07302' => 'bca', 'BolC2t06040H' => 'bol', 'BolC2t07346H' => 'bol', 'BolC3t13817H' => 'bol', 'BolC4t22625H' => 'bol', 'BolC4t23297H' => 'bol', 'BolC8t51278H' => 'bol', 'BolC9t58050H' => 'bol', 'BolC9t58051H' => 'bol', 'BolC9t60163H' => 'bol', 'BraA02t04712Z' => 'bra', 'BraA02t05791Z' => 'bra', 'BraA03t10483Z' => 'bra', 'BraA05t19795Z' => 'bra', 'BraA05t20276Z' => 'bra', 'BraA09t40827Z' => 'bra', 'BraA10t43750Z' => 'bra', 'BraA10t43751Z' => 'bra', 'BraA10t45370Z' => 'bra', 'C02p00400' => 'bna', 'C02p12460' => 'bna', 'C03p13680' => 'bna', 'C04p10270' => 'bna', 'C04p17500' => 'bna', 'C08p37010' => 'bna', 'C09p51880' => 'bna', 'C09p51890' => 'bna', 'C09p74300' => 'bna', 'CAN.G179.26' => 'can', 'CAN.G3384.1' => 'can', 'CAN.G394.68' => 'can', 'CAN.G907.13' => 'can', 'CANSAT11G0012' => 'cansat', 'CANSAT25G1586' => 'cansat', 'CANSAT35G0735' => 'cansat', 'CANSAT54G0556' => 'cansat', 'CANSAT64G0356' => 'cansat', 'CANSAT78G2042' => 'cansat', 'CARHR125920' => 'chi', 'CARHR131910' => 'chi', 'CARHR172390' => 'chi', 'CARHR211140' => 'chi', 'CARHR285850' => 'chi', 'CARHR285860' => 'chi', 'Carub.0004s1347' => 'cru', 'Carub.0004s1960' => 'cru', 'Carub.0005s2880' => 'cru', 'Carub.0006s0107' => 'cru', 'Carub.0008s2015' => 'cru', 'Carub.0008s2016' => 'cru', 'Carub.0008s2017' => 'cru', 'Ca_01315_v3' => 'car', 'Ca_05063_v3' => 'car', 'Ca_10231_v3' => 'car', 'Ca_10913_v3' => 'car', 'Ca_19156_v3' => 'car', 'Ca_23644_v3' => 'car', 'Ca_26735_v3' => 'car', 'Cc01_g13130' => 'ccan', 'Cc02_g21690' => 'ccan', 'Cc03_g03600' => 'ccan', 'Cc06_g02510' => 'ccan', 'CDE02G1265' => 'cde', 'CDE05G0415' => 'cde', 'CDE08G1082' => 'cde', 'Cfa005780' => 'cfa', 'Cfa011522' => 'cfa', 'Cfa011523' => 'cfa', 'Cfa015627' => 'cfa', 'Cfa017359' => 'cfa', 'Ciclev10005687m.g' => 'ccl', 'Ciclev10012173m.g' => 'ccl', 'Ciclev10021621m.g' => 'ccl', 'Ciclev10028968m.g' => 'ccl', 'Ciclev10029907m.g' => 'ccl', 'CiPaw.01G164800' => 'cil', 'CiPaw.07G083700' => 'cil', 'CiPaw.07G127000' => 'cil', 'CiPaw.07G136900' => 'cil', 'CiPaw.08G081700' => 'cil', 'CiPaw.09G194600' => 'cil', 'CiPaw.10G146500' => 'cil', 'CiPaw.13G091500' => 'cil', 'CiPaw.13G091600' => 'cil', 'ClCG00G003390' => 'cla', 'ClCG01G007220' => 'cla', 'ClCG03G001370' => 'cla', 'ClCG04G008100' => 'cla', 'ClCG06G006110' => 'cla', 'ClCG06G006130' => 'cla', 'ClCG10G021210' => 'cla', 'COL.COLO4_07648' => 'col', 'COL.COLO4_07650' => 'col', 'COL.COLO4_07651' => 'col', 'COL.COLO4_14780' => 'col', 'COL.COLO4_18546' => 'col', 'COL.COLO4_18547' => 'col', 'COL.COLO4_23103' => 'col', 'COL.COLO4_30419' => 'col', 'COL.COLO4_34232' => 'col', 'Cpa.g.sc169.20' => 'cpa', 'Cpa.g.sc57.45' => 'cpa', 'Cpa.g.sc58.124' => 'cpa', 'Cpa.g.sc58.125' => 'cpa', 'Cpa.g.sc81.118' => 'cpa', 'Cpa.g.sc81.119' => 'cpa', 'Cre12.g524700' => 'cre', 'CsaV3_1G034430' => 'csa', 'CsaV3_1G034440' => 'csa', 'CsaV3_1G034450' => 'csa', 'CsaV3_3G034830' => 'csa', 'CsaV3_4G025090' => 'csa', 'CsaV3_5G018660' => 'csa', 'CsaV3_6G038160' => 'csa', 'CSS0003447' => 'camsi', 'CSS0017840' => 'camsi', 'CSS0019260' => 'camsi', 'CSS0040375' => 'camsi', 'CSS0042533' => 'camsi', 'DCAR_005960' => 'dca', 'DCAR_012104' => 'dca', 'DCAR_012105' => 'dca', 'DCAR_012293' => 'dca', 'DCAR_015632' => 'dca', 'DCAR_024602' => 'dca', 'DCAR_028752' => 'dca', 'Dinv06261' => 'din', 'Dinv13982' => 'din', 'Dinv17029' => 'din', 'Dinv18463' => 'din', 'Dinv33181' => 'din', 'Dinv35585' => 'din', 'Dinv37161' => 'din', 'Dinv42977' => 'din', 'Dinv43122' => 'din', 'Dinv44517' => 'din', 'Duzib093G0256' => 'dzi', 'Duzib106G1254' => 'dzi', 'Duzib128G1789' => 'dzi', 'Duzib133G0633' => 'dzi', 'Duzib138G0510' => 'dzi', 'Duzib150G1084' => 'dzi', 'Duzib168G0488' => 'dzi', 'Duzib168G1523' => 'dzi', 'Duzib170G0133' => 'dzi', 'ECA234G1433' => 'eca', 'ECA236G1432' => 'eca', 'ECA236G2256' => 'eca', 'ECA236G2365' => 'eca', 'ECA236G4830' => 'eca', 'ECA248G1505' => 'eca', 'EL10Ac3g06431' => 'bvu', 'EL10Ac5g12577' => 'bvu', 'EL10Ac6g13533' => 'bvu', 'EL10Ac7g16045' => 'bvu', 'Eucgr.A01281' => 'egr', 'Eucgr.B02326' => 'egr', 'Eucgr.H03532' => 'egr', 'Eucgr.K00553' => 'egr', 'Eucgr.K03116' => 'egr', 'FAN02G3963' => 'fan', 'FAN05G0438' => 'fan', 'FAN09G2434' => 'fan', 'FAN12G3984' => 'fan', 'FAN14G0798' => 'fan', 'FAN17G0652' => 'fan', 'FAN19G1988' => 'fan', 'FAN22G0632' => 'fan', 'FAN23G0387' => 'fan', 'FAN26G1323' => 'fan', 'FAN28G0666' => 'fan', 'FvH4_1g26080' => 'fve', 'FvH4_3g36780' => 'fve', 'FvH4_4g15270' => 'fve', 'FvH4_6g13490' => 'fve', 'Glyma.01G098700' => 'gma', 'Glyma.03G065900' => 'gma', 'Glyma.03G073754' => 'gma', 'Glyma.03G073758' => 'gma', 'Glyma.03G083200' => 'gma', 'Glyma.03G225500' => 'gma', 'Glyma.05G037766' => 'gma', 'Glyma.07G133500' => 'gma', 'Glyma.10G139400' => 'gma', 'Glyma.10G248900' => 'gma', 'Glyma.11G137800' => 'gma', 'Glyma.12G061300' => 'gma', 'Glyma.13G337900' => 'gma', 'Glyma.15G036600' => 'gma', 'Glyma.18G182800' => 'gma', 'Glyma.19G222500' => 'gma', 'Glyma.20G144800' => 'gma', 'Gohir.A01G222000' => 'ghi', 'Gohir.A03G044000' => 'ghi', 'Gohir.A03G044100' => 'ghi', 'Gohir.A04G083100' => 'ghi', 'Gohir.A07G127200' => 'ghi', 'Gohir.A07G132400' => 'ghi', 'Gohir.A08G000700' => 'ghi', 'Gohir.A11G327300' => 'ghi', 'Gohir.D01G211500' => 'ghi', 'Gohir.D03G123400' => 'ghi', 'Gohir.D03G123500' => 'ghi', 'Gohir.D04G121800' => 'ghi', 'Gohir.D07G131500' => 'ghi', 'Gohir.D07G136600' => 'ghi', 'Gohir.D08G011600' => 'ghi', 'Gohir.D11G346200' => 'ghi', 'Gorai.001G142800' => 'gra', 'Gorai.001G148700' => 'gra', 'Gorai.002G257300' => 'gra', 'Gorai.003G130000' => 'gra', 'Gorai.003G130100' => 'gra', 'Gorai.004G005300' => 'gra', 'Gorai.007G376500' => 'gra', 'Gorai.012G104700' => 'gra', 'GSVIVG01017946001' => 'vvi', 'GSVIVG01024928001' => 'vvi', 'GSVIVG01028227001' => 'vvi', 'GSVIVG01034151001' => 'vvi', 'HanXRQChr05g0135031' => 'han', 'HanXRQChr05g0135041' => 'han', 'HanXRQChr05g0140021' => 'han', 'HanXRQChr06g0178981' => 'han', 'HanXRQChr07g0188251' => 'han', 'HanXRQChr08g0235311' => 'han', 'HanXRQChr09g0271011' => 'han', 'HanXRQChr10g0293321' => 'han', 'HanXRQChr13g0388171' => 'han', 'Haze_00916' => 'cav', 'Haze_05063' => 'cav', 'Haze_20814' => 'cav', 'Haze_24128' => 'cav', 'Hma1.2p1_0745F.1_g212010' => 'hma', 'Hma1.2p1_0757F.1_g213260' => 'hma', 'Hma1.2p1_0936F.1_g238840' => 'hma', 'Hma1.2p1_1735F.1_g299890' => 'hma', 'Hma1.2p1_1861F.1_g305685' => 'hma', 'HPP92_003397' => 'vpl', 'HPP92_012597' => 'vpl', 'HPP92_015520' => 'vpl', 'HPP92_015539' => 'vpl', 'HPP92_020373' => 'vpl', 'Hund04938' => 'sun', 'Hund10677' => 'sun', 'Hund11033' => 'sun', 'Hund12155' => 'sun', 'Lalb_Chr01g0022551' => 'lal', 'Lalb_Chr03g0042341' => 'lal', 'Lalb_Chr07g0192931' => 'lal', 'Lalb_Chr12g0209551' => 'lal', 'Lalb_Chr19g0125251' => 'lal', 'Lalb_Chr19g0137891' => 'lal', 'Lalb_Chr21g0304641' => 'lal', 'Lalb_Chr21g0309881' => 'lal', 'Lj1A5T12' => 'lonja', 'Lj1C148G10' => 'lonja', 'Lj2A93T83' => 'lonja', 'Lj3A738G68' => 'lonja', 'Lj3C966T1' => 'lonja', 'Lj3g0018958' => 'lja', 'Lj3g0021831' => 'lja', 'Lj3g0025443' => 'lja', 'Lj4g0026809' => 'lja', 'Lj5g0012558' => 'lja', 'Lj5g0021586' => 'lja', 'Lsat_1_v5_gn_5_156840' => 'lsa', 'Lsat_1_v5_gn_8_73460' => 'lsa', 'Lsat_1_v5_gn_8_73481' => 'lsa', 'Lsat_1_v5_gn_9_31601' => 'lsa', 'Lsat_1_v5_gn_9_77320' => 'lsa', 'Manes.01G171300' => 'mes', 'Manes.01G171400' => 'mes', 'Manes.01G236100' => 'mes', 'Manes.02G130500' => 'mes', 'Manes.02G130600' => 'mes', 'Manes.03G180200' => 'mes', 'Manes.05G007000' => 'mes', 'Manes.08G084400' => 'mes', 'Manes.09G092600' => 'mes', 'Manes.15G027900' => 'mes', 'MBI04_g40948_MAGBIO' => 'mbi', 'MBI14_g12123_MAGBIO' => 'mbi', 'MBI18_g28915_MAGBIO' => 'mbi', 'MCO09G053' => 'mco', 'MCO11G782' => 'mco', 'MCO15G215' => 'mco', 'MD03G1088500' => 'mdo', 'MD03G1088600' => 'mdo', 'MD04G1130800' => 'mdo', 'MD09G1291700' => 'mdo', 'MD11G1097500' => 'mdo', 'MD11G1097600' => 'mdo', 'MD12G1143900' => 'mdo', 'MD13G1191400' => 'mdo', 'MD16G1191500' => 'mdo', 'Medtr1g085570' => 'mtr', 'Medtr1g104610' => 'mtr', 'Medtr2g097520' => 'mtr', 'Medtr4g021800' => 'mtr', 'Medtr4g021825' => 'mtr', 'Medtr4g064270' => 'mtr', 'Medtr4g064380' => 'mtr', 'Medtr7g062150' => 'mtr', 'MELO3C003138.2' => 'cme', 'MELO3C005187.2' => 'cme', 'MELO3C009252.2' => 'cme', 'MELO3C014481.2' => 'cme', 'MELO3C020616.2' => 'cme', 'MELO3C020617.2' => 'cme', 'MELO3C020618.2' => 'cme', 'Migut.G00328' => 'egut', 'Migut.J00320' => 'egut', 'Migut.L01000' => 'egut', 'Migut.L01953' => 'egut', 'MSTRG.10253' => 'ama', 'MSTRG.19077' => 'ama', 'MSTRG.26780' => 'ama', 'MSTRG.4023' => 'ama', 'MSTRG.5655' => 'ama', 'MSTRG.9992' => 'ama', 'Nitab4.5_0000043g0310' => 'nta', 'Nitab4.5_0000463g0080' => 'nta', 'Nitab4.5_0000705g0170' => 'nta', 'Nitab4.5_0001326g0060' => 'nta', 'Nitab4.5_0001628g0030' => 'nta', 'Nitab4.5_0002103g0110' => 'nta', 'Nitab4.5_0002946g0030' => 'nta', 'Nitab4.5_0004639g0030' => 'nta', 'Nn2g11149' => 'nnu', 'Nn2g13389' => 'nnu', 'Nn4g25326' => 'nnu', 'Nn4g26290' => 'nnu', 'Nn5g29865' => 'nnu', 'Oeu004163.1' => 'oeu', 'Oeu006901.1' => 'oeu', 'Oeu010096.1' => 'oeu', 'Oeu024340.1' => 'oeu', 'Oeu048369.1' => 'oeu', 'Os01g0973000' => 'osa', 'Os03g0273800' => 'osa', 'Os03g0701200' => 'osa', 'Os03g0834050' => 'osa', 'Os07g0634400' => 'osa', 'Peaxi162Scf00092g01414' => 'pax', 'Peaxi162Scf00165g00818' => 'pax', 'Peaxi162Scf00309g00516' => 'pax', 'Peaxi162Scf00774g00218' => 'pax', 'PGR004G1824' => 'pgr', 'PGR004G2606' => 'pgr', 'PGR031G2716' => 'pgr', 'PGR102G2460' => 'pgr', 'PGR142G2599' => 'pgr', 'PGSC0003DMG400000843' => 'stu', 'PGSC0003DMG400008829' => 'stu', 'PGSC0003DMG400030418' => 'stu', 'PGSC0003DMG400031834' => 'stu', 'PGSC0003DMG401028300' => 'stu', 'PGSC0003DMG402028300' => 'stu', 'Phvul.001G219300' => 'pvu', 'Phvul.007G056000' => 'pvu', 'Phvul.007G208000' => 'pvu', 'Phvul.008G119500' => 'pvu', 'Phvul.010G011200' => 'pvu', 'Phvul.010G014800' => 'pvu', 'Phvul.011G062900' => 'pvu', 'Phvul.L007043' => 'pvu', 'Potri.001G242300' => 'ptr', 'Potri.002G185300' => 'ptr', 'Potri.006G086900' => 'ptr', 'Potri.008G151700' => 'ptr', 'Potri.009G033500' => 'ptr', 'Potri.010G089300' => 'ptr', 'Potri.014G110800' => 'ptr', 'Pp3c27_8130' => 'ppa', 'Pp3c6_27410' => 'ppa', 'PRCOL_00001659' => 'pco', 'PRCOL_00001927' => 'pco', 'PRCOL_00003649' => 'pco', 'Prupe.1G011600' => 'ppe', 'Prupe.3G000800' => 'ppe', 'Prupe.3G001100' => 'ppe', 'Prupe.6G072700' => 'ppe', 'Prupe.6G072800' => 'ppe', 'Prupe.6G257300' => 'ppe', 'Prupe.8G033000' => 'ppe', 'Psat0s2633g0080' => 'psa', 'Psat0s3396g0080' => 'psa', 'Psat0s3396g0200' => 'psa', 'Psat3g139080' => 'psa', 'Psat5g285080' => 'psa', 'Psat6g157760' => 'psa', 'Psat6g208440' => 'psa', 'Psat7g215320' => 'psa', 'Psat7g215400' => 'psa', 'Psat7g235600' => 'psa', 'Psat7g235760' => 'psa', 'PSO063G4603' => 'pso', 'PSO210G0182' => 'pso', 'PSO210G0196' => 'pso', 'PSO339G0394' => 'pso', 'PSO339G4127' => 'pso', 'PSO513G0064' => 'pso', 'PSO761G0079' => 'pso', 'QL01p031003' => 'qlo', 'QL01p031078' => 'qlo', 'QL06p003004' => 'qlo', 'QL07p048731' => 'qlo', 'QL09p037427' => 'qlo', 'RcHm_v2.0_Chr3g0466361' => 'rch', 'RcHm_v2.0_Chr3g0485571' => 'rch', 'RcHm_v2.0_Chr4g0416551' => 'rch', 'RcHm_v2.0_Chr5g0065831' => 'rch', 'Rhsim01G0230500' => 'rsi', 'Rhsim05G0194000' => 'rsi', 'Rhsim08G0250400' => 'rsi', 'Sabra02G0131000' => 'sbr', 'Sabra06G0066300' => 'sbr', 'Sabra08G0115500' => 'sbr', 'Sabra09G0023900' => 'sbr', 'Sabra10G0054000' => 'sbr', 'Sabra14G0081500' => 'sbr', 'Sabra16G0147100' => 'sbr', 'SalBow2G2957' => 'sbo', 'SalBow4G3320' => 'sbo', 'SalBow8G1894' => 'sbo', 'Sc07g0007950' => 'sci', 'Sc12g0001360' => 'sci', 'Sc13g0004330' => 'sci', 'Sc20g0005010' => 'sci', 'Sed0000361' => 'sed', 'Sed0001706' => 'sed', 'Sed0002422' => 'sed', 'Sed0004029' => 'sed', 'Sed0004602' => 'sed', 'Sed0004943' => 'sed', 'Sed0008646' => 'sed', 'Sed0023313' => 'sed', 'Sed0024843' => 'sed', 'SEGI_00081' => 'sgi', 'SEGI_00947' => 'sgi', 'SEGI_04046' => 'sgi', 'SEGI_06880' => 'sgi', 'SEGI_09736' => 'sgi', 'SEGI_12741' => 'sgi', 'SEGI_14530' => 'sgi', 'SEGI_20705' => 'sgi', 'SEGI_26088' => 'sgi', 'SEGI_28323' => 'sgi', 'SEGI_33343' => 'sgi', 'SGA_v2.0_scaffold126G33775' => 'sas', 'SGA_v2.0_scaffold2G01337' => 'sas', 'SGA_v2.0_scaffold38G15006' => 'sas', 'SGA_v2.0_scaffold39G15264' => 'sas', 'SGA_v2.0_scaffold453G51880' => 'sas', 'SHI12696' => 'shi', 'SMO367G1096' => 'smo', 'Solyc01g068630.3' => 'sly', 'Solyc05g011880.3' => 'sly', 'Solyc06g076300.3' => 'sly', 'Solyc09g010940.4' => 'sly', 'Solyc09g075890.3' => 'sly', 'Sopen01g030560' => 'spe', 'Sopen05g006630' => 'spe', 'Sopen06g032720' => 'spe', 'Sopen09g005660' => 'spe', 'Sopen09g030690' => 'spe', 'Sp4g14540' => 'spa', 'Sp4g20030' => 'spa', 'Sp5g01320' => 'spa', 'Sp6g21170' => 'spa', 'Sp6g21180' => 'spa', 'Sp6g21190' => 'spa', 'Sp6g40220' => 'spa', 'TAR362G0122' => 'tar', 'TAR362G1338' => 'tar', 'TAR369G0590' => 'tar', 'TAR371G0824' => 'tar', 'TAR622G1429' => 'tar', 'TAR623G0734' => 'tar', 'TAR625G0441' => 'tar', 'TAR629G0976' => 'tar', 'TAR633G1195' => 'tar', 'TAR636G2660' => 'tar', 'THA.LOC104799440' => 'tha', 'THA.LOC104800966' => 'tha', 'THA.LOC104806559' => 'tha', 'THA.LOC104810765' => 'tha', 'THA.LOC104816266' => 'tha', 'THA.LOC104817419' => 'tha', 'THA.LOC104827021' => 'tha', 'Thecc.01G327400' => 'tca', 'Thecc.04G229200' => 'tca', 'Thecc.05G037400' => 'tca', 'Thecc.09G318600' => 'tca', 'Thecc.09G318700' => 'tca', 'Thhalv10006238m.g' => 'esa', 'Thhalv10014321m.g' => 'esa', 'Thhalv10014335m.g' => 'esa', 'Thhalv10015826m.g' => 'esa', 'Thhalv10017107m.g' => 'esa', 'Thhalv10017180m.g' => 'esa', 'Thhalv10029339m.g' => 'esa', 'TPR.G1699' => 'tpr', 'TPR.G23609' => 'tpr', 'TPR.G3081' => 'tpr', 'TPR.G40397' => 'tpr', 'TPR.G5522' => 'tpr', 'TPR.G5618' => 'tpr', 'TPR.G5626' => 'tpr', 'TWI09G1632' => 'twi', 'TWI23G1230' => 'twi', 'TWI53G1064' => 'twi', 'TWI59G0751' => 'twi', 'TWI74G0947' => 'twi', 'TWI77G0337' => 'twi', 'TWI79G1254' => 'twi', 'unitig_0.g2341' => 'ugi', 'unitig_26.g10006' => 'ugi', 'unitig_26.g10008' => 'ugi', 'unitig_26.g9192' => 'ugi', 'vmacro14547' => 'vma', 'vmacro15333' => 'vma', 'vmacro18743' => 'vma', 'vmacro20166' => 'vma', 'VMungo0331G0523' => 'vmu', 'VMungo0331G1202' => 'vmu', 'VMungo0720G1228' => 'vmu', 'VMungo0720G1514' => 'vmu', 'VMungo1080G0169' => 'vmu', 'VMungo1127G1475' => 'vmu', 'VMungo1383G1208' => 'vmu', 'VMungo1383G1698' => 'vmu', 'Zm00001eb012270' => 'zma', 'Zm00001eb054100' => 'zma', 'Zm00001eb063350' => 'zma', 'Zm00001eb328560' => 'zma', 'Zm00001eb342820' => 'zma', 'Zm00001eb362210' => 'zma', 'Zm00001eb397730' => 'zma', 'Zm00001eb399750' => 'zma' ), 'gf_id' => 'HOM05D000959', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000959' ), 'data_identifier' => 'HOM05D000959', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000959', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '622', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p07100' => 'bna', 'A03p11720' => 'bna', 'A05p08300' => 'bna', 'A05p13380' => 'bna', 'A09p54130' => 'bna', 'A10p16690' => 'bna', 'A10p16700' => 'bna', 'A10p33390' => 'bna', 'Aa31LG10G16020' => 'aar', 'Aa31LG1G11810' => 'aar', 'Aa31LG1G11830' => 'aar', 'Aa31LG1G22510' => 'aar', 'Aa31LG5G4890' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5793' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2310' => 'aag', 'Actinidia08499' => 'ach', 'Actinidia11262' => 'ach', 'Actinidia23926' => 'ach', 'Actinidia34420' => 'ach', 'Actinidia36970' => 'ach', 'Ah.02g111220' => 'amhyb', 'Ah.15g097750' => 'amhyb', 'AL4G27500' => 'aly', 'AL6G11470' => 'aly', 'AL8G35950' => 'aly', 'AL8G35960' => 'aly', 'AL8G35970' => 'aly', 'Aqoxy1G00912' => 'aox', 'Aqoxy2G02253' => 'aox', 'Aqoxy2G02411' => 'aox', 'Aqoxy5G00485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BZ66YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K8ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM4FUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6BF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HFV7XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25JBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0YNNV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MAKK6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P70IT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP2Z6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V61LZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YWP64R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3S9AI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7PGHH' => 'arhy', 'AT2G32150' => 'ath', 'AT3G62040' => 'ath', 'AT5G02230' => 'ath', 'AT5G59480' => 'ath', 'AT5G59490' => 'ath', 'ATR0332G060' => 'atr', 'ATR0559G190' => 'atr', 'ATR0693G294' => 'atr', 'Atru.chr3.3975' => 'acertr', 'Atru.chr3.3976' => 'acertr', 'Atru.chr3.3977' => 'acertr', 'Atru.chr4.2498' => 'acertr', 'Atru.chr5.838' => 'acertr', 'Atru.chr8.1990' => 'acertr', 'Atru.chr8.1991' => 'acertr', 'Atru.chr8.1992' => 'acertr', 'AUR62001759' => 'cqu', 'AUR62009545' => 'cqu', 'AUR62010474' => 'cqu', 'AUR62025820' => 'cqu', 'AUR62030422' => 'cqu', 'AUR62033605' => 'cqu', 'AUR62038615' => 'cqu', 'AUR62041347' => 'cqu', 'BcaB01g04574' => 'bca', 'BcaB02g09263' => 'bca', 'BcaB02g10453' => 'bca', 'BcaB05g22513' => 'bca', 'BcaB08g36253' => 'bca', 'BcaB08g36254' => 'bca', 'BcaC01g06519' => 'bca', 'BcaC02g11889' => 'bca', 'BcaC03g14010' => 'bca', 'BcaC03g18439' => 'bca', 'BcaC04g19765' => 'bca', 'BcaC09g48432' => 'bca', 'BcaNung07302' => 'bca', 'BolC2t06040H' => 'bol', 'BolC2t07346H' => 'bol', 'BolC3t13817H' => 'bol', 'BolC4t22625H' => 'bol', 'BolC4t23297H' => 'bol', 'BolC8t51278H' => 'bol', 'BolC9t58050H' => 'bol', 'BolC9t58051H' => 'bol', 'BolC9t60163H' => 'bol', 'BraA02t04712Z' => 'bra', 'BraA02t05791Z' => 'bra', 'BraA03t10483Z' => 'bra', 'BraA05t19795Z' => 'bra', 'BraA05t20276Z' => 'bra', 'BraA09t40827Z' => 'bra', 'BraA10t43750Z' => 'bra', 'BraA10t43751Z' => 'bra', 'BraA10t45370Z' => 'bra', 'C02p00400' => 'bna', 'C02p12460' => 'bna', 'C03p13680' => 'bna', 'C04p10270' => 'bna', 'C04p17500' => 'bna', 'C08p37010' => 'bna', 'C09p51880' => 'bna', 'C09p51890' => 'bna', 'C09p74300' => 'bna', 'CAN.G179.26' => 'can', 'CAN.G3384.1' => 'can', 'CAN.G394.68' => 'can', 'CAN.G907.13' => 'can', 'CANSAT11G0012' => 'cansat', 'CANSAT25G1586' => 'cansat', 'CANSAT35G0735' => 'cansat', 'CANSAT54G0556' => 'cansat', 'CANSAT64G0356' => 'cansat', 'CANSAT78G2042' => 'cansat', 'CARHR125920' => 'chi', 'CARHR131910' => 'chi', 'CARHR172390' => 'chi', 'CARHR211140' => 'chi', 'CARHR285850' => 'chi', 'CARHR285860' => 'chi', 'Carub.0004s1347' => 'cru', 'Carub.0004s1960' => 'cru', 'Carub.0005s2880' => 'cru', 'Carub.0006s0107' => 'cru', 'Carub.0008s2015' => 'cru', 'Carub.0008s2016' => 'cru', 'Carub.0008s2017' => 'cru', 'Ca_01315_v3' => 'car', 'Ca_05063_v3' => 'car', 'Ca_10231_v3' => 'car', 'Ca_10913_v3' => 'car', 'Ca_19156_v3' => 'car', 'Ca_23644_v3' => 'car', 'Ca_26735_v3' => 'car', 'Cc01_g13130' => 'ccan', 'Cc02_g21690' => 'ccan', 'Cc03_g03600' => 'ccan', 'Cc06_g02510' => 'ccan', 'CDE02G1265' => 'cde', 'CDE05G0415' => 'cde', 'CDE08G1082' => 'cde', 'Cfa005780' => 'cfa', 'Cfa011522' => 'cfa', 'Cfa011523' => 'cfa', 'Cfa015627' => 'cfa', 'Cfa017359' => 'cfa', 'Ciclev10005687m.g' => 'ccl', 'Ciclev10012173m.g' => 'ccl', 'Ciclev10021621m.g' => 'ccl', 'Ciclev10028968m.g' => 'ccl', 'Ciclev10029907m.g' => 'ccl', 'CiPaw.01G164800' => 'cil', 'CiPaw.07G083700' => 'cil', 'CiPaw.07G127000' => 'cil', 'CiPaw.07G136900' => 'cil', 'CiPaw.08G081700' => 'cil', 'CiPaw.09G194600' => 'cil', 'CiPaw.10G146500' => 'cil', 'CiPaw.13G091500' => 'cil', 'CiPaw.13G091600' => 'cil', 'ClCG00G003390' => 'cla', 'ClCG01G007220' => 'cla', 'ClCG03G001370' => 'cla', 'ClCG04G008100' => 'cla', 'ClCG06G006110' => 'cla', 'ClCG06G006130' => 'cla', 'ClCG10G021210' => 'cla', 'COL.COLO4_07648' => 'col', 'COL.COLO4_07650' => 'col', 'COL.COLO4_07651' => 'col', 'COL.COLO4_14780' => 'col', 'COL.COLO4_18546' => 'col', 'COL.COLO4_18547' => 'col', 'COL.COLO4_23103' => 'col', 'COL.COLO4_30419' => 'col', 'COL.COLO4_34232' => 'col', 'Cpa.g.sc169.20' => 'cpa', 'Cpa.g.sc57.45' => 'cpa', 'Cpa.g.sc58.124' => 'cpa', 'Cpa.g.sc58.125' => 'cpa', 'Cpa.g.sc81.118' => 'cpa', 'Cpa.g.sc81.119' => 'cpa', 'Cre12.g524700' => 'cre', 'CsaV3_1G034430' => 'csa', 'CsaV3_1G034440' => 'csa', 'CsaV3_1G034450' => 'csa', 'CsaV3_3G034830' => 'csa', 'CsaV3_4G025090' => 'csa', 'CsaV3_5G018660' => 'csa', 'CsaV3_6G038160' => 'csa', 'CSS0003447' => 'camsi', 'CSS0017840' => 'camsi', 'CSS0019260' => 'camsi', 'CSS0040375' => 'camsi', 'CSS0042533' => 'camsi', 'DCAR_005960' => 'dca', 'DCAR_012104' => 'dca', 'DCAR_012105' => 'dca', 'DCAR_012293' => 'dca', 'DCAR_015632' => 'dca', 'DCAR_024602' => 'dca', 'DCAR_028752' => 'dca', 'Dinv06261' => 'din', 'Dinv13982' => 'din', 'Dinv17029' => 'din', 'Dinv18463' => 'din', 'Dinv33181' => 'din', 'Dinv35585' => 'din', 'Dinv37161' => 'din', 'Dinv42977' => 'din', 'Dinv43122' => 'din', 'Dinv44517' => 'din', 'Duzib093G0256' => 'dzi', 'Duzib106G1254' => 'dzi', 'Duzib128G1789' => 'dzi', 'Duzib133G0633' => 'dzi', 'Duzib138G0510' => 'dzi', 'Duzib150G1084' => 'dzi', 'Duzib168G0488' => 'dzi', 'Duzib168G1523' => 'dzi', 'Duzib170G0133' => 'dzi', 'ECA234G1433' => 'eca', 'ECA236G1432' => 'eca', 'ECA236G2256' => 'eca', 'ECA236G2365' => 'eca', 'ECA236G4830' => 'eca', 'ECA248G1505' => 'eca', 'EL10Ac3g06431' => 'bvu', 'EL10Ac5g12577' => 'bvu', 'EL10Ac6g13533' => 'bvu', 'EL10Ac7g16045' => 'bvu', 'Eucgr.A01281' => 'egr', 'Eucgr.B02326' => 'egr', 'Eucgr.H03532' => 'egr', 'Eucgr.K00553' => 'egr', 'Eucgr.K03116' => 'egr', 'FAN02G3963' => 'fan', 'FAN05G0438' => 'fan', 'FAN09G2434' => 'fan', 'FAN12G3984' => 'fan', 'FAN14G0798' => 'fan', 'FAN17G0652' => 'fan', 'FAN19G1988' => 'fan', 'FAN22G0632' => 'fan', 'FAN23G0387' => 'fan', 'FAN26G1323' => 'fan', 'FAN28G0666' => 'fan', 'FvH4_1g26080' => 'fve', 'FvH4_3g36780' => 'fve', 'FvH4_4g15270' => 'fve', 'FvH4_6g13490' => 'fve', 'Glyma.01G098700' => 'gma', 'Glyma.03G065900' => 'gma', 'Glyma.03G073754' => 'gma', 'Glyma.03G073758' => 'gma', 'Glyma.03G083200' => 'gma', 'Glyma.03G225500' => 'gma', 'Glyma.05G037766' => 'gma', 'Glyma.07G133500' => 'gma', 'Glyma.10G139400' => 'gma', 'Glyma.10G248900' => 'gma', 'Glyma.11G137800' => 'gma', 'Glyma.12G061300' => 'gma', 'Glyma.13G337900' => 'gma', 'Glyma.15G036600' => 'gma', 'Glyma.18G182800' => 'gma', 'Glyma.19G222500' => 'gma', 'Glyma.20G144800' => 'gma', 'Gohir.A01G222000' => 'ghi', 'Gohir.A03G044000' => 'ghi', 'Gohir.A03G044100' => 'ghi', 'Gohir.A04G083100' => 'ghi', 'Gohir.A07G127200' => 'ghi', 'Gohir.A07G132400' => 'ghi', 'Gohir.A08G000700' => 'ghi', 'Gohir.A11G327300' => 'ghi', 'Gohir.D01G211500' => 'ghi', 'Gohir.D03G123400' => 'ghi', 'Gohir.D03G123500' => 'ghi', 'Gohir.D04G121800' => 'ghi', 'Gohir.D07G131500' => 'ghi', 'Gohir.D07G136600' => 'ghi', 'Gohir.D08G011600' => 'ghi', 'Gohir.D11G346200' => 'ghi', 'Gorai.001G142800' => 'gra', 'Gorai.001G148700' => 'gra', 'Gorai.002G257300' => 'gra', 'Gorai.003G130000' => 'gra', 'Gorai.003G130100' => 'gra', 'Gorai.004G005300' => 'gra', 'Gorai.007G376500' => 'gra', 'Gorai.012G104700' => 'gra', 'GSVIVG01017946001' => 'vvi', 'GSVIVG01024928001' => 'vvi', 'GSVIVG01028227001' => 'vvi', 'GSVIVG01034151001' => 'vvi', 'HanXRQChr05g0135031' => 'han', 'HanXRQChr05g0135041' => 'han', 'HanXRQChr05g0140021' => 'han', 'HanXRQChr06g0178981' => 'han', 'HanXRQChr07g0188251' => 'han', 'HanXRQChr08g0235311' => 'han', 'HanXRQChr09g0271011' => 'han', 'HanXRQChr10g0293321' => 'han', 'HanXRQChr13g0388171' => 'han', 'Haze_00916' => 'cav', 'Haze_05063' => 'cav', 'Haze_20814' => 'cav', 'Haze_24128' => 'cav', 'Hma1.2p1_0745F.1_g212010' => 'hma', 'Hma1.2p1_0757F.1_g213260' => 'hma', 'Hma1.2p1_0936F.1_g238840' => 'hma', 'Hma1.2p1_1735F.1_g299890' => 'hma', 'Hma1.2p1_1861F.1_g305685' => 'hma', 'HPP92_003397' => 'vpl', 'HPP92_012597' => 'vpl', 'HPP92_015520' => 'vpl', 'HPP92_015539' => 'vpl', 'HPP92_020373' => 'vpl', 'Hund04938' => 'sun', 'Hund10677' => 'sun', 'Hund11033' => 'sun', 'Hund12155' => 'sun', 'Lalb_Chr01g0022551' => 'lal', 'Lalb_Chr03g0042341' => 'lal', 'Lalb_Chr07g0192931' => 'lal', 'Lalb_Chr12g0209551' => 'lal', 'Lalb_Chr19g0125251' => 'lal', 'Lalb_Chr19g0137891' => 'lal', 'Lalb_Chr21g0304641' => 'lal', 'Lalb_Chr21g0309881' => 'lal', 'Lj1A5T12' => 'lonja', 'Lj1C148G10' => 'lonja', 'Lj2A93T83' => 'lonja', 'Lj3A738G68' => 'lonja', 'Lj3C966T1' => 'lonja', 'Lj3g0018958' => 'lja', 'Lj3g0021831' => 'lja', 'Lj3g0025443' => 'lja', 'Lj4g0026809' => 'lja', 'Lj5g0012558' => 'lja', 'Lj5g0021586' => 'lja', 'Lsat_1_v5_gn_5_156840' => 'lsa', 'Lsat_1_v5_gn_8_73460' => 'lsa', 'Lsat_1_v5_gn_8_73481' => 'lsa', 'Lsat_1_v5_gn_9_31601' => 'lsa', 'Lsat_1_v5_gn_9_77320' => 'lsa', 'Manes.01G171300' => 'mes', 'Manes.01G171400' => 'mes', 'Manes.01G236100' => 'mes', 'Manes.02G130500' => 'mes', 'Manes.02G130600' => 'mes', 'Manes.03G180200' => 'mes', 'Manes.05G007000' => 'mes', 'Manes.08G084400' => 'mes', 'Manes.09G092600' => 'mes', 'Manes.15G027900' => 'mes', 'MBI04_g40948_MAGBIO' => 'mbi', 'MBI14_g12123_MAGBIO' => 'mbi', 'MBI18_g28915_MAGBIO' => 'mbi', 'MCO09G053' => 'mco', 'MCO11G782' => 'mco', 'MCO15G215' => 'mco', 'MD03G1088500' => 'mdo', 'MD03G1088600' => 'mdo', 'MD04G1130800' => 'mdo', 'MD09G1291700' => 'mdo', 'MD11G1097500' => 'mdo', 'MD11G1097600' => 'mdo', 'MD12G1143900' => 'mdo', 'MD13G1191400' => 'mdo', 'MD16G1191500' => 'mdo', 'Medtr1g085570' => 'mtr', 'Medtr1g104610' => 'mtr', 'Medtr2g097520' => 'mtr', 'Medtr4g021800' => 'mtr', 'Medtr4g021825' => 'mtr', 'Medtr4g064270' => 'mtr', 'Medtr4g064380' => 'mtr', 'Medtr7g062150' => 'mtr', 'MELO3C003138.2' => 'cme', 'MELO3C005187.2' => 'cme', 'MELO3C009252.2' => 'cme', 'MELO3C014481.2' => 'cme', 'MELO3C020616.2' => 'cme', 'MELO3C020617.2' => 'cme', 'MELO3C020618.2' => 'cme', 'Migut.G00328' => 'egut', 'Migut.J00320' => 'egut', 'Migut.L01000' => 'egut', 'Migut.L01953' => 'egut', 'MSTRG.10253' => 'ama', 'MSTRG.19077' => 'ama', 'MSTRG.26780' => 'ama', 'MSTRG.4023' => 'ama', 'MSTRG.5655' => 'ama', 'MSTRG.9992' => 'ama', 'Nitab4.5_0000043g0310' => 'nta', 'Nitab4.5_0000463g0080' => 'nta', 'Nitab4.5_0000705g0170' => 'nta', 'Nitab4.5_0001326g0060' => 'nta', 'Nitab4.5_0001628g0030' => 'nta', 'Nitab4.5_0002103g0110' => 'nta', 'Nitab4.5_0002946g0030' => 'nta', 'Nitab4.5_0004639g0030' => 'nta', 'Nn2g11149' => 'nnu', 'Nn2g13389' => 'nnu', 'Nn4g25326' => 'nnu', 'Nn4g26290' => 'nnu', 'Nn5g29865' => 'nnu', 'Oeu004163.1' => 'oeu', 'Oeu006901.1' => 'oeu', 'Oeu010096.1' => 'oeu', 'Oeu024340.1' => 'oeu', 'Oeu048369.1' => 'oeu', 'Os01g0973000' => 'osa', 'Os03g0273800' => 'osa', 'Os03g0701200' => 'osa', 'Os03g0834050' => 'osa', 'Os07g0634400' => 'osa', 'Peaxi162Scf00092g01414' => 'pax', 'Peaxi162Scf00165g00818' => 'pax', 'Peaxi162Scf00309g00516' => 'pax', 'Peaxi162Scf00774g00218' => 'pax', 'PGR004G1824' => 'pgr', 'PGR004G2606' => 'pgr', 'PGR031G2716' => 'pgr', 'PGR102G2460' => 'pgr', 'PGR142G2599' => 'pgr', 'PGSC0003DMG400000843' => 'stu', 'PGSC0003DMG400008829' => 'stu', 'PGSC0003DMG400030418' => 'stu', 'PGSC0003DMG400031834' => 'stu', 'PGSC0003DMG401028300' => 'stu', 'PGSC0003DMG402028300' => 'stu', 'Phvul.001G219300' => 'pvu', 'Phvul.007G056000' => 'pvu', 'Phvul.007G208000' => 'pvu', 'Phvul.008G119500' => 'pvu', 'Phvul.010G011200' => 'pvu', 'Phvul.010G014800' => 'pvu', 'Phvul.011G062900' => 'pvu', 'Phvul.L007043' => 'pvu', 'Potri.001G242300' => 'ptr', 'Potri.002G185300' => 'ptr', 'Potri.006G086900' => 'ptr', 'Potri.008G151700' => 'ptr', 'Potri.009G033500' => 'ptr', 'Potri.010G089300' => 'ptr', 'Potri.014G110800' => 'ptr', 'Pp3c27_8130' => 'ppa', 'Pp3c6_27410' => 'ppa', 'PRCOL_00001659' => 'pco', 'PRCOL_00001927' => 'pco', 'PRCOL_00003649' => 'pco', 'Prupe.1G011600' => 'ppe', 'Prupe.3G000800' => 'ppe', 'Prupe.3G001100' => 'ppe', 'Prupe.6G072700' => 'ppe', 'Prupe.6G072800' => 'ppe', 'Prupe.6G257300' => 'ppe', 'Prupe.8G033000' => 'ppe', 'Psat0s2633g0080' => 'psa', 'Psat0s3396g0080' => 'psa', 'Psat0s3396g0200' => 'psa', 'Psat3g139080' => 'psa', 'Psat5g285080' => 'psa', 'Psat6g157760' => 'psa', 'Psat6g208440' => 'psa', 'Psat7g215320' => 'psa', 'Psat7g215400' => 'psa', 'Psat7g235600' => 'psa', 'Psat7g235760' => 'psa', 'PSO063G4603' => 'pso', 'PSO210G0182' => 'pso', 'PSO210G0196' => 'pso', 'PSO339G0394' => 'pso', 'PSO339G4127' => 'pso', 'PSO513G0064' => 'pso', 'PSO761G0079' => 'pso', 'QL01p031003' => 'qlo', 'QL01p031078' => 'qlo', 'QL06p003004' => 'qlo', 'QL07p048731' => 'qlo', 'QL09p037427' => 'qlo', 'RcHm_v2.0_Chr3g0466361' => 'rch', 'RcHm_v2.0_Chr3g0485571' => 'rch', 'RcHm_v2.0_Chr4g0416551' => 'rch', 'RcHm_v2.0_Chr5g0065831' => 'rch', 'Rhsim01G0230500' => 'rsi', 'Rhsim05G0194000' => 'rsi', 'Rhsim08G0250400' => 'rsi', 'Sabra02G0131000' => 'sbr', 'Sabra06G0066300' => 'sbr', 'Sabra08G0115500' => 'sbr', 'Sabra09G0023900' => 'sbr', 'Sabra10G0054000' => 'sbr', 'Sabra14G0081500' => 'sbr', 'Sabra16G0147100' => 'sbr', 'SalBow2G2957' => 'sbo', 'SalBow4G3320' => 'sbo', 'SalBow8G1894' => 'sbo', 'Sc07g0007950' => 'sci', 'Sc12g0001360' => 'sci', 'Sc13g0004330' => 'sci', 'Sc20g0005010' => 'sci', 'Sed0000361' => 'sed', 'Sed0001706' => 'sed', 'Sed0002422' => 'sed', 'Sed0004029' => 'sed', 'Sed0004602' => 'sed', 'Sed0004943' => 'sed', 'Sed0008646' => 'sed', 'Sed0023313' => 'sed', 'Sed0024843' => 'sed', 'SEGI_00081' => 'sgi', 'SEGI_00947' => 'sgi', 'SEGI_04046' => 'sgi', 'SEGI_06880' => 'sgi', 'SEGI_09736' => 'sgi', 'SEGI_12741' => 'sgi', 'SEGI_14530' => 'sgi', 'SEGI_20705' => 'sgi', 'SEGI_26088' => 'sgi', 'SEGI_28323' => 'sgi', 'SEGI_33343' => 'sgi', 'SGA_v2.0_scaffold126G33775' => 'sas', 'SGA_v2.0_scaffold2G01337' => 'sas', 'SGA_v2.0_scaffold38G15006' => 'sas', 'SGA_v2.0_scaffold39G15264' => 'sas', 'SGA_v2.0_scaffold453G51880' => 'sas', 'SHI12696' => 'shi', 'SMO367G1096' => 'smo', 'Solyc01g068630.3' => 'sly', 'Solyc05g011880.3' => 'sly', 'Solyc06g076300.3' => 'sly', 'Solyc09g010940.4' => 'sly', 'Solyc09g075890.3' => 'sly', 'Sopen01g030560' => 'spe', 'Sopen05g006630' => 'spe', 'Sopen06g032720' => 'spe', 'Sopen09g005660' => 'spe', 'Sopen09g030690' => 'spe', 'Sp4g14540' => 'spa', 'Sp4g20030' => 'spa', 'Sp5g01320' => 'spa', 'Sp6g21170' => 'spa', 'Sp6g21180' => 'spa', 'Sp6g21190' => 'spa', 'Sp6g40220' => 'spa', 'TAR362G0122' => 'tar', 'TAR362G1338' => 'tar', 'TAR369G0590' => 'tar', 'TAR371G0824' => 'tar', 'TAR622G1429' => 'tar', 'TAR623G0734' => 'tar', 'TAR625G0441' => 'tar', 'TAR629G0976' => 'tar', 'TAR633G1195' => 'tar', 'TAR636G2660' => 'tar', 'THA.LOC104799440' => 'tha', 'THA.LOC104800966' => 'tha', 'THA.LOC104806559' => 'tha', 'THA.LOC104810765' => 'tha', 'THA.LOC104816266' => 'tha', 'THA.LOC104817419' => 'tha', 'THA.LOC104827021' => 'tha', 'Thecc.01G327400' => 'tca', 'Thecc.04G229200' => 'tca', 'Thecc.05G037400' => 'tca', 'Thecc.09G318600' => 'tca', 'Thecc.09G318700' => 'tca', 'Thhalv10006238m.g' => 'esa', 'Thhalv10014321m.g' => 'esa', 'Thhalv10014335m.g' => 'esa', 'Thhalv10015826m.g' => 'esa', 'Thhalv10017107m.g' => 'esa', 'Thhalv10017180m.g' => 'esa', 'Thhalv10029339m.g' => 'esa', 'TPR.G1699' => 'tpr', 'TPR.G23609' => 'tpr', 'TPR.G3081' => 'tpr', 'TPR.G40397' => 'tpr', 'TPR.G5522' => 'tpr', 'TPR.G5618' => 'tpr', 'TPR.G5626' => 'tpr', 'TWI09G1632' => 'twi', 'TWI23G1230' => 'twi', 'TWI53G1064' => 'twi', 'TWI59G0751' => 'twi', 'TWI74G0947' => 'twi', 'TWI77G0337' => 'twi', 'TWI79G1254' => 'twi', 'unitig_0.g2341' => 'ugi', 'unitig_26.g10006' => 'ugi', 'unitig_26.g10008' => 'ugi', 'unitig_26.g9192' => 'ugi', 'vmacro14547' => 'vma', 'vmacro15333' => 'vma', 'vmacro18743' => 'vma', 'vmacro20166' => 'vma', 'VMungo0331G0523' => 'vmu', 'VMungo0331G1202' => 'vmu', 'VMungo0720G1228' => 'vmu', 'VMungo0720G1514' => 'vmu', 'VMungo1080G0169' => 'vmu', 'VMungo1127G1475' => 'vmu', 'VMungo1383G1208' => 'vmu', 'VMungo1383G1698' => 'vmu', 'Zm00001eb012270' => 'zma', 'Zm00001eb054100' => 'zma', 'Zm00001eb063350' => 'zma', 'Zm00001eb328560' => 'zma', 'Zm00001eb342820' => 'zma', 'Zm00001eb362210' => 'zma', 'Zm00001eb397730' => 'zma', 'Zm00001eb399750' => 'zma' ) $gf_id = 'HOM05D000959' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000959' ) $data_identifier = 'HOM05D000959' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 5, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 5, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 10, 'mbi' => (int) 3, 'mco' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 2, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 3, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 11, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399750' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000959', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '622', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p07100' => 'bna', 'A03p11720' => 'bna', 'A05p08300' => 'bna', 'A05p13380' => 'bna', 'A09p54130' => 'bna', 'A10p16690' => 'bna', 'A10p16700' => 'bna', 'A10p33390' => 'bna', 'Aa31LG10G16020' => 'aar', 'Aa31LG1G11810' => 'aar', 'Aa31LG1G11830' => 'aar', 'Aa31LG1G22510' => 'aar', 'Aa31LG5G4890' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5793' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2310' => 'aag', 'Actinidia08499' => 'ach', 'Actinidia11262' => 'ach', 'Actinidia23926' => 'ach', 'Actinidia34420' => 'ach', 'Actinidia36970' => 'ach', 'Ah.02g111220' => 'amhyb', 'Ah.15g097750' => 'amhyb', 'AL4G27500' => 'aly', 'AL6G11470' => 'aly', 'AL8G35950' => 'aly', 'AL8G35960' => 'aly', 'AL8G35970' => 'aly', 'Aqoxy1G00912' => 'aox', 'Aqoxy2G02253' => 'aox', 'Aqoxy2G02411' => 'aox', 'Aqoxy5G00485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BZ66YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K8ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM4FUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6BF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HFV7XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25JBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0YNNV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MAKK6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P70IT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP2Z6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V61LZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YWP64R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3S9AI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7PGHH' => 'arhy', 'AT2G32150' => 'ath', 'AT3G62040' => 'ath', 'AT5G02230' => 'ath', 'AT5G59480' => 'ath', 'AT5G59490' => 'ath', 'ATR0332G060' => 'atr', 'ATR0559G190' => 'atr', 'ATR0693G294' => 'atr', 'Atru.chr3.3975' => 'acertr', 'Atru.chr3.3976' => 'acertr', 'Atru.chr3.3977' => 'acertr', 'Atru.chr4.2498' => 'acertr', 'Atru.chr5.838' => 'acertr', 'Atru.chr8.1990' => 'acertr', 'Atru.chr8.1991' => 'acertr', 'Atru.chr8.1992' => 'acertr', 'AUR62001759' => 'cqu', 'AUR62009545' => 'cqu', 'AUR62010474' => 'cqu', 'AUR62025820' => 'cqu', 'AUR62030422' => 'cqu', 'AUR62033605' => 'cqu', 'AUR62038615' => 'cqu', 'AUR62041347' => 'cqu', 'BcaB01g04574' => 'bca', 'BcaB02g09263' => 'bca', 'BcaB02g10453' => 'bca', 'BcaB05g22513' => 'bca', 'BcaB08g36253' => 'bca', 'BcaB08g36254' => 'bca', 'BcaC01g06519' => 'bca', 'BcaC02g11889' => 'bca', 'BcaC03g14010' => 'bca', 'BcaC03g18439' => 'bca', 'BcaC04g19765' => 'bca', 'BcaC09g48432' => 'bca', 'BcaNung07302' => 'bca', 'BolC2t06040H' => 'bol', 'BolC2t07346H' => 'bol', 'BolC3t13817H' => 'bol', 'BolC4t22625H' => 'bol', 'BolC4t23297H' => 'bol', 'BolC8t51278H' => 'bol', 'BolC9t58050H' => 'bol', 'BolC9t58051H' => 'bol', 'BolC9t60163H' => 'bol', 'BraA02t04712Z' => 'bra', 'BraA02t05791Z' => 'bra', 'BraA03t10483Z' => 'bra', 'BraA05t19795Z' => 'bra', 'BraA05t20276Z' => 'bra', 'BraA09t40827Z' => 'bra', 'BraA10t43750Z' => 'bra', 'BraA10t43751Z' => 'bra', 'BraA10t45370Z' => 'bra', 'C02p00400' => 'bna', 'C02p12460' => 'bna', 'C03p13680' => 'bna', 'C04p10270' => 'bna', 'C04p17500' => 'bna', 'C08p37010' => 'bna', 'C09p51880' => 'bna', 'C09p51890' => 'bna', 'C09p74300' => 'bna', 'CAN.G179.26' => 'can', 'CAN.G3384.1' => 'can', 'CAN.G394.68' => 'can', 'CAN.G907.13' => 'can', 'CANSAT11G0012' => 'cansat', 'CANSAT25G1586' => 'cansat', 'CANSAT35G0735' => 'cansat', 'CANSAT54G0556' => 'cansat', 'CANSAT64G0356' => 'cansat', 'CANSAT78G2042' => 'cansat', 'CARHR125920' => 'chi', 'CARHR131910' => 'chi', 'CARHR172390' => 'chi', 'CARHR211140' => 'chi', 'CARHR285850' => 'chi', 'CARHR285860' => 'chi', 'Carub.0004s1347' => 'cru', 'Carub.0004s1960' => 'cru', 'Carub.0005s2880' => 'cru', 'Carub.0006s0107' => 'cru', 'Carub.0008s2015' => 'cru', 'Carub.0008s2016' => 'cru', 'Carub.0008s2017' => 'cru', 'Ca_01315_v3' => 'car', 'Ca_05063_v3' => 'car', 'Ca_10231_v3' => 'car', 'Ca_10913_v3' => 'car', 'Ca_19156_v3' => 'car', 'Ca_23644_v3' => 'car', 'Ca_26735_v3' => 'car', 'Cc01_g13130' => 'ccan', 'Cc02_g21690' => 'ccan', 'Cc03_g03600' => 'ccan', 'Cc06_g02510' => 'ccan', 'CDE02G1265' => 'cde', 'CDE05G0415' => 'cde', 'CDE08G1082' => 'cde', 'Cfa005780' => 'cfa', 'Cfa011522' => 'cfa', 'Cfa011523' => 'cfa', 'Cfa015627' => 'cfa', 'Cfa017359' => 'cfa', 'Ciclev10005687m.g' => 'ccl', 'Ciclev10012173m.g' => 'ccl', 'Ciclev10021621m.g' => 'ccl', 'Ciclev10028968m.g' => 'ccl', 'Ciclev10029907m.g' => 'ccl', 'CiPaw.01G164800' => 'cil', 'CiPaw.07G083700' => 'cil', 'CiPaw.07G127000' => 'cil', 'CiPaw.07G136900' => 'cil', 'CiPaw.08G081700' => 'cil', 'CiPaw.09G194600' => 'cil', 'CiPaw.10G146500' => 'cil', 'CiPaw.13G091500' => 'cil', 'CiPaw.13G091600' => 'cil', 'ClCG00G003390' => 'cla', 'ClCG01G007220' => 'cla', 'ClCG03G001370' => 'cla', 'ClCG04G008100' => 'cla', 'ClCG06G006110' => 'cla', 'ClCG06G006130' => 'cla', 'ClCG10G021210' => 'cla', 'COL.COLO4_07648' => 'col', 'COL.COLO4_07650' => 'col', 'COL.COLO4_07651' => 'col', 'COL.COLO4_14780' => 'col', 'COL.COLO4_18546' => 'col', 'COL.COLO4_18547' => 'col', 'COL.COLO4_23103' => 'col', 'COL.COLO4_30419' => 'col', 'COL.COLO4_34232' => 'col', 'Cpa.g.sc169.20' => 'cpa', 'Cpa.g.sc57.45' => 'cpa', 'Cpa.g.sc58.124' => 'cpa', 'Cpa.g.sc58.125' => 'cpa', 'Cpa.g.sc81.118' => 'cpa', 'Cpa.g.sc81.119' => 'cpa', 'Cre12.g524700' => 'cre', 'CsaV3_1G034430' => 'csa', 'CsaV3_1G034440' => 'csa', 'CsaV3_1G034450' => 'csa', 'CsaV3_3G034830' => 'csa', 'CsaV3_4G025090' => 'csa', 'CsaV3_5G018660' => 'csa', 'CsaV3_6G038160' => 'csa', 'CSS0003447' => 'camsi', 'CSS0017840' => 'camsi', 'CSS0019260' => 'camsi', 'CSS0040375' => 'camsi', 'CSS0042533' => 'camsi', 'DCAR_005960' => 'dca', 'DCAR_012104' => 'dca', 'DCAR_012105' => 'dca', 'DCAR_012293' => 'dca', 'DCAR_015632' => 'dca', 'DCAR_024602' => 'dca', 'DCAR_028752' => 'dca', 'Dinv06261' => 'din', 'Dinv13982' => 'din', 'Dinv17029' => 'din', 'Dinv18463' => 'din', 'Dinv33181' => 'din', 'Dinv35585' => 'din', 'Dinv37161' => 'din', 'Dinv42977' => 'din', 'Dinv43122' => 'din', 'Dinv44517' => 'din', 'Duzib093G0256' => 'dzi', 'Duzib106G1254' => 'dzi', 'Duzib128G1789' => 'dzi', 'Duzib133G0633' => 'dzi', 'Duzib138G0510' => 'dzi', 'Duzib150G1084' => 'dzi', 'Duzib168G0488' => 'dzi', 'Duzib168G1523' => 'dzi', 'Duzib170G0133' => 'dzi', 'ECA234G1433' => 'eca', 'ECA236G1432' => 'eca', 'ECA236G2256' => 'eca', 'ECA236G2365' => 'eca', 'ECA236G4830' => 'eca', 'ECA248G1505' => 'eca', 'EL10Ac3g06431' => 'bvu', 'EL10Ac5g12577' => 'bvu', 'EL10Ac6g13533' => 'bvu', 'EL10Ac7g16045' => 'bvu', 'Eucgr.A01281' => 'egr', 'Eucgr.B02326' => 'egr', 'Eucgr.H03532' => 'egr', 'Eucgr.K00553' => 'egr', 'Eucgr.K03116' => 'egr', 'FAN02G3963' => 'fan', 'FAN05G0438' => 'fan', 'FAN09G2434' => 'fan', 'FAN12G3984' => 'fan', 'FAN14G0798' => 'fan', 'FAN17G0652' => 'fan', 'FAN19G1988' => 'fan', 'FAN22G0632' => 'fan', 'FAN23G0387' => 'fan', 'FAN26G1323' => 'fan', 'FAN28G0666' => 'fan', 'FvH4_1g26080' => 'fve', 'FvH4_3g36780' => 'fve', 'FvH4_4g15270' => 'fve', 'FvH4_6g13490' => 'fve', 'Glyma.01G098700' => 'gma', 'Glyma.03G065900' => 'gma', 'Glyma.03G073754' => 'gma', 'Glyma.03G073758' => 'gma', 'Glyma.03G083200' => 'gma', 'Glyma.03G225500' => 'gma', 'Glyma.05G037766' => 'gma', 'Glyma.07G133500' => 'gma', 'Glyma.10G139400' => 'gma', 'Glyma.10G248900' => 'gma', 'Glyma.11G137800' => 'gma', 'Glyma.12G061300' => 'gma', 'Glyma.13G337900' => 'gma', 'Glyma.15G036600' => 'gma', 'Glyma.18G182800' => 'gma', 'Glyma.19G222500' => 'gma', 'Glyma.20G144800' => 'gma', 'Gohir.A01G222000' => 'ghi', 'Gohir.A03G044000' => 'ghi', 'Gohir.A03G044100' => 'ghi', 'Gohir.A04G083100' => 'ghi', 'Gohir.A07G127200' => 'ghi', 'Gohir.A07G132400' => 'ghi', 'Gohir.A08G000700' => 'ghi', 'Gohir.A11G327300' => 'ghi', 'Gohir.D01G211500' => 'ghi', 'Gohir.D03G123400' => 'ghi', 'Gohir.D03G123500' => 'ghi', 'Gohir.D04G121800' => 'ghi', 'Gohir.D07G131500' => 'ghi', 'Gohir.D07G136600' => 'ghi', 'Gohir.D08G011600' => 'ghi', 'Gohir.D11G346200' => 'ghi', 'Gorai.001G142800' => 'gra', 'Gorai.001G148700' => 'gra', 'Gorai.002G257300' => 'gra', 'Gorai.003G130000' => 'gra', 'Gorai.003G130100' => 'gra', 'Gorai.004G005300' => 'gra', 'Gorai.007G376500' => 'gra', 'Gorai.012G104700' => 'gra', 'GSVIVG01017946001' => 'vvi', 'GSVIVG01024928001' => 'vvi', 'GSVIVG01028227001' => 'vvi', 'GSVIVG01034151001' => 'vvi', 'HanXRQChr05g0135031' => 'han', 'HanXRQChr05g0135041' => 'han', 'HanXRQChr05g0140021' => 'han', 'HanXRQChr06g0178981' => 'han', 'HanXRQChr07g0188251' => 'han', 'HanXRQChr08g0235311' => 'han', 'HanXRQChr09g0271011' => 'han', 'HanXRQChr10g0293321' => 'han', 'HanXRQChr13g0388171' => 'han', 'Haze_00916' => 'cav', 'Haze_05063' => 'cav', 'Haze_20814' => 'cav', 'Haze_24128' => 'cav', 'Hma1.2p1_0745F.1_g212010' => 'hma', 'Hma1.2p1_0757F.1_g213260' => 'hma', 'Hma1.2p1_0936F.1_g238840' => 'hma', 'Hma1.2p1_1735F.1_g299890' => 'hma', 'Hma1.2p1_1861F.1_g305685' => 'hma', 'HPP92_003397' => 'vpl', 'HPP92_012597' => 'vpl', 'HPP92_015520' => 'vpl', 'HPP92_015539' => 'vpl', 'HPP92_020373' => 'vpl', 'Hund04938' => 'sun', 'Hund10677' => 'sun', 'Hund11033' => 'sun', 'Hund12155' => 'sun', 'Lalb_Chr01g0022551' => 'lal', 'Lalb_Chr03g0042341' => 'lal', 'Lalb_Chr07g0192931' => 'lal', 'Lalb_Chr12g0209551' => 'lal', 'Lalb_Chr19g0125251' => 'lal', 'Lalb_Chr19g0137891' => 'lal', 'Lalb_Chr21g0304641' => 'lal', 'Lalb_Chr21g0309881' => 'lal', 'Lj1A5T12' => 'lonja', 'Lj1C148G10' => 'lonja', 'Lj2A93T83' => 'lonja', 'Lj3A738G68' => 'lonja', 'Lj3C966T1' => 'lonja', 'Lj3g0018958' => 'lja', 'Lj3g0021831' => 'lja', 'Lj3g0025443' => 'lja', 'Lj4g0026809' => 'lja', 'Lj5g0012558' => 'lja', 'Lj5g0021586' => 'lja', 'Lsat_1_v5_gn_5_156840' => 'lsa', 'Lsat_1_v5_gn_8_73460' => 'lsa', 'Lsat_1_v5_gn_8_73481' => 'lsa', 'Lsat_1_v5_gn_9_31601' => 'lsa', 'Lsat_1_v5_gn_9_77320' => 'lsa', 'Manes.01G171300' => 'mes', 'Manes.01G171400' => 'mes', 'Manes.01G236100' => 'mes', 'Manes.02G130500' => 'mes', 'Manes.02G130600' => 'mes', 'Manes.03G180200' => 'mes', 'Manes.05G007000' => 'mes', 'Manes.08G084400' => 'mes', 'Manes.09G092600' => 'mes', 'Manes.15G027900' => 'mes', 'MBI04_g40948_MAGBIO' => 'mbi', 'MBI14_g12123_MAGBIO' => 'mbi', 'MBI18_g28915_MAGBIO' => 'mbi', 'MCO09G053' => 'mco', 'MCO11G782' => 'mco', 'MCO15G215' => 'mco', 'MD03G1088500' => 'mdo', 'MD03G1088600' => 'mdo', 'MD04G1130800' => 'mdo', 'MD09G1291700' => 'mdo', 'MD11G1097500' => 'mdo', 'MD11G1097600' => 'mdo', 'MD12G1143900' => 'mdo', 'MD13G1191400' => 'mdo', 'MD16G1191500' => 'mdo', 'Medtr1g085570' => 'mtr', 'Medtr1g104610' => 'mtr', 'Medtr2g097520' => 'mtr', 'Medtr4g021800' => 'mtr', 'Medtr4g021825' => 'mtr', 'Medtr4g064270' => 'mtr', 'Medtr4g064380' => 'mtr', 'Medtr7g062150' => 'mtr', 'MELO3C003138.2' => 'cme', 'MELO3C005187.2' => 'cme', 'MELO3C009252.2' => 'cme', 'MELO3C014481.2' => 'cme', 'MELO3C020616.2' => 'cme', 'MELO3C020617.2' => 'cme', 'MELO3C020618.2' => 'cme', 'Migut.G00328' => 'egut', 'Migut.J00320' => 'egut', 'Migut.L01000' => 'egut', 'Migut.L01953' => 'egut', 'MSTRG.10253' => 'ama', 'MSTRG.19077' => 'ama', 'MSTRG.26780' => 'ama', 'MSTRG.4023' => 'ama', 'MSTRG.5655' => 'ama', 'MSTRG.9992' => 'ama', 'Nitab4.5_0000043g0310' => 'nta', 'Nitab4.5_0000463g0080' => 'nta', 'Nitab4.5_0000705g0170' => 'nta', 'Nitab4.5_0001326g0060' => 'nta', 'Nitab4.5_0001628g0030' => 'nta', 'Nitab4.5_0002103g0110' => 'nta', 'Nitab4.5_0002946g0030' => 'nta', 'Nitab4.5_0004639g0030' => 'nta', 'Nn2g11149' => 'nnu', 'Nn2g13389' => 'nnu', 'Nn4g25326' => 'nnu', 'Nn4g26290' => 'nnu', 'Nn5g29865' => 'nnu', 'Oeu004163.1' => 'oeu', 'Oeu006901.1' => 'oeu', 'Oeu010096.1' => 'oeu', 'Oeu024340.1' => 'oeu', 'Oeu048369.1' => 'oeu', 'Os01g0973000' => 'osa', 'Os03g0273800' => 'osa', 'Os03g0701200' => 'osa', 'Os03g0834050' => 'osa', 'Os07g0634400' => 'osa', 'Peaxi162Scf00092g01414' => 'pax', 'Peaxi162Scf00165g00818' => 'pax', 'Peaxi162Scf00309g00516' => 'pax', 'Peaxi162Scf00774g00218' => 'pax', 'PGR004G1824' => 'pgr', 'PGR004G2606' => 'pgr', 'PGR031G2716' => 'pgr', 'PGR102G2460' => 'pgr', 'PGR142G2599' => 'pgr', 'PGSC0003DMG400000843' => 'stu', 'PGSC0003DMG400008829' => 'stu', 'PGSC0003DMG400030418' => 'stu', 'PGSC0003DMG400031834' => 'stu', 'PGSC0003DMG401028300' => 'stu', 'PGSC0003DMG402028300' => 'stu', 'Phvul.001G219300' => 'pvu', 'Phvul.007G056000' => 'pvu', 'Phvul.007G208000' => 'pvu', 'Phvul.008G119500' => 'pvu', 'Phvul.010G011200' => 'pvu', 'Phvul.010G014800' => 'pvu', 'Phvul.011G062900' => 'pvu', 'Phvul.L007043' => 'pvu', 'Potri.001G242300' => 'ptr', 'Potri.002G185300' => 'ptr', 'Potri.006G086900' => 'ptr', 'Potri.008G151700' => 'ptr', 'Potri.009G033500' => 'ptr', 'Potri.010G089300' => 'ptr', 'Potri.014G110800' => 'ptr', 'Pp3c27_8130' => 'ppa', 'Pp3c6_27410' => 'ppa', 'PRCOL_00001659' => 'pco', 'PRCOL_00001927' => 'pco', 'PRCOL_00003649' => 'pco', 'Prupe.1G011600' => 'ppe', 'Prupe.3G000800' => 'ppe', 'Prupe.3G001100' => 'ppe', 'Prupe.6G072700' => 'ppe', 'Prupe.6G072800' => 'ppe', 'Prupe.6G257300' => 'ppe', 'Prupe.8G033000' => 'ppe', 'Psat0s2633g0080' => 'psa', 'Psat0s3396g0080' => 'psa', 'Psat0s3396g0200' => 'psa', 'Psat3g139080' => 'psa', 'Psat5g285080' => 'psa', 'Psat6g157760' => 'psa', 'Psat6g208440' => 'psa', 'Psat7g215320' => 'psa', 'Psat7g215400' => 'psa', 'Psat7g235600' => 'psa', 'Psat7g235760' => 'psa', 'PSO063G4603' => 'pso', 'PSO210G0182' => 'pso', 'PSO210G0196' => 'pso', 'PSO339G0394' => 'pso', 'PSO339G4127' => 'pso', 'PSO513G0064' => 'pso', 'PSO761G0079' => 'pso', 'QL01p031003' => 'qlo', 'QL01p031078' => 'qlo', 'QL06p003004' => 'qlo', 'QL07p048731' => 'qlo', 'QL09p037427' => 'qlo', 'RcHm_v2.0_Chr3g0466361' => 'rch', 'RcHm_v2.0_Chr3g0485571' => 'rch', 'RcHm_v2.0_Chr4g0416551' => 'rch', 'RcHm_v2.0_Chr5g0065831' => 'rch', 'Rhsim01G0230500' => 'rsi', 'Rhsim05G0194000' => 'rsi', 'Rhsim08G0250400' => 'rsi', 'Sabra02G0131000' => 'sbr', 'Sabra06G0066300' => 'sbr', 'Sabra08G0115500' => 'sbr', 'Sabra09G0023900' => 'sbr', 'Sabra10G0054000' => 'sbr', 'Sabra14G0081500' => 'sbr', 'Sabra16G0147100' => 'sbr', 'SalBow2G2957' => 'sbo', 'SalBow4G3320' => 'sbo', 'SalBow8G1894' => 'sbo', 'Sc07g0007950' => 'sci', 'Sc12g0001360' => 'sci', 'Sc13g0004330' => 'sci', 'Sc20g0005010' => 'sci', 'Sed0000361' => 'sed', 'Sed0001706' => 'sed', 'Sed0002422' => 'sed', 'Sed0004029' => 'sed', 'Sed0004602' => 'sed', 'Sed0004943' => 'sed', 'Sed0008646' => 'sed', 'Sed0023313' => 'sed', 'Sed0024843' => 'sed', 'SEGI_00081' => 'sgi', 'SEGI_00947' => 'sgi', 'SEGI_04046' => 'sgi', 'SEGI_06880' => 'sgi', 'SEGI_09736' => 'sgi', 'SEGI_12741' => 'sgi', 'SEGI_14530' => 'sgi', 'SEGI_20705' => 'sgi', 'SEGI_26088' => 'sgi', 'SEGI_28323' => 'sgi', 'SEGI_33343' => 'sgi', 'SGA_v2.0_scaffold126G33775' => 'sas', 'SGA_v2.0_scaffold2G01337' => 'sas', 'SGA_v2.0_scaffold38G15006' => 'sas', 'SGA_v2.0_scaffold39G15264' => 'sas', 'SGA_v2.0_scaffold453G51880' => 'sas', 'SHI12696' => 'shi', 'SMO367G1096' => 'smo', 'Solyc01g068630.3' => 'sly', 'Solyc05g011880.3' => 'sly', 'Solyc06g076300.3' => 'sly', 'Solyc09g010940.4' => 'sly', 'Solyc09g075890.3' => 'sly', 'Sopen01g030560' => 'spe', 'Sopen05g006630' => 'spe', 'Sopen06g032720' => 'spe', 'Sopen09g005660' => 'spe', 'Sopen09g030690' => 'spe', 'Sp4g14540' => 'spa', 'Sp4g20030' => 'spa', 'Sp5g01320' => 'spa', 'Sp6g21170' => 'spa', 'Sp6g21180' => 'spa', 'Sp6g21190' => 'spa', 'Sp6g40220' => 'spa', 'TAR362G0122' => 'tar', 'TAR362G1338' => 'tar', 'TAR369G0590' => 'tar', 'TAR371G0824' => 'tar', 'TAR622G1429' => 'tar', 'TAR623G0734' => 'tar', 'TAR625G0441' => 'tar', 'TAR629G0976' => 'tar', 'TAR633G1195' => 'tar', 'TAR636G2660' => 'tar', 'THA.LOC104799440' => 'tha', 'THA.LOC104800966' => 'tha', 'THA.LOC104806559' => 'tha', 'THA.LOC104810765' => 'tha', 'THA.LOC104816266' => 'tha', 'THA.LOC104817419' => 'tha', 'THA.LOC104827021' => 'tha', 'Thecc.01G327400' => 'tca', 'Thecc.04G229200' => 'tca', 'Thecc.05G037400' => 'tca', 'Thecc.09G318600' => 'tca', 'Thecc.09G318700' => 'tca', 'Thhalv10006238m.g' => 'esa', 'Thhalv10014321m.g' => 'esa', 'Thhalv10014335m.g' => 'esa', 'Thhalv10015826m.g' => 'esa', 'Thhalv10017107m.g' => 'esa', 'Thhalv10017180m.g' => 'esa', 'Thhalv10029339m.g' => 'esa', 'TPR.G1699' => 'tpr', 'TPR.G23609' => 'tpr', 'TPR.G3081' => 'tpr', 'TPR.G40397' => 'tpr', 'TPR.G5522' => 'tpr', 'TPR.G5618' => 'tpr', 'TPR.G5626' => 'tpr', 'TWI09G1632' => 'twi', 'TWI23G1230' => 'twi', 'TWI53G1064' => 'twi', 'TWI59G0751' => 'twi', 'TWI74G0947' => 'twi', 'TWI77G0337' => 'twi', 'TWI79G1254' => 'twi', 'unitig_0.g2341' => 'ugi', 'unitig_26.g10006' => 'ugi', 'unitig_26.g10008' => 'ugi', 'unitig_26.g9192' => 'ugi', 'vmacro14547' => 'vma', 'vmacro15333' => 'vma', 'vmacro18743' => 'vma', 'vmacro20166' => 'vma', 'VMungo0331G0523' => 'vmu', 'VMungo0331G1202' => 'vmu', 'VMungo0720G1228' => 'vmu', 'VMungo0720G1514' => 'vmu', 'VMungo1080G0169' => 'vmu', 'VMungo1127G1475' => 'vmu', 'VMungo1383G1208' => 'vmu', 'VMungo1383G1698' => 'vmu', 'Zm00001eb012270' => 'zma', 'Zm00001eb054100' => 'zma', 'Zm00001eb063350' => 'zma', 'Zm00001eb328560' => 'zma', 'Zm00001eb342820' => 'zma', 'Zm00001eb362210' => 'zma', 'Zm00001eb397730' => 'zma', 'Zm00001eb399750' => 'zma' ), 'gf_id' => 'HOM05D000959', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000959' ), 'data_identifier' => 'HOM05D000959', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000959', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '622', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p07100' => 'bna', 'A03p11720' => 'bna', 'A05p08300' => 'bna', 'A05p13380' => 'bna', 'A09p54130' => 'bna', 'A10p16690' => 'bna', 'A10p16700' => 'bna', 'A10p33390' => 'bna', 'Aa31LG10G16020' => 'aar', 'Aa31LG1G11810' => 'aar', 'Aa31LG1G11830' => 'aar', 'Aa31LG1G22510' => 'aar', 'Aa31LG5G4890' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5793' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2310' => 'aag', 'Actinidia08499' => 'ach', 'Actinidia11262' => 'ach', 'Actinidia23926' => 'ach', 'Actinidia34420' => 'ach', 'Actinidia36970' => 'ach', 'Ah.02g111220' => 'amhyb', 'Ah.15g097750' => 'amhyb', 'AL4G27500' => 'aly', 'AL6G11470' => 'aly', 'AL8G35950' => 'aly', 'AL8G35960' => 'aly', 'AL8G35970' => 'aly', 'Aqoxy1G00912' => 'aox', 'Aqoxy2G02253' => 'aox', 'Aqoxy2G02411' => 'aox', 'Aqoxy5G00485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BZ66YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K8ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM4FUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6BF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HFV7XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25JBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0YNNV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MAKK6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P70IT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP2Z6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V61LZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YWP64R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3S9AI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7PGHH' => 'arhy', 'AT2G32150' => 'ath', 'AT3G62040' => 'ath', 'AT5G02230' => 'ath', 'AT5G59480' => 'ath', 'AT5G59490' => 'ath', 'ATR0332G060' => 'atr', 'ATR0559G190' => 'atr', 'ATR0693G294' => 'atr', 'Atru.chr3.3975' => 'acertr', 'Atru.chr3.3976' => 'acertr', 'Atru.chr3.3977' => 'acertr', 'Atru.chr4.2498' => 'acertr', 'Atru.chr5.838' => 'acertr', 'Atru.chr8.1990' => 'acertr', 'Atru.chr8.1991' => 'acertr', 'Atru.chr8.1992' => 'acertr', 'AUR62001759' => 'cqu', 'AUR62009545' => 'cqu', 'AUR62010474' => 'cqu', 'AUR62025820' => 'cqu', 'AUR62030422' => 'cqu', 'AUR62033605' => 'cqu', 'AUR62038615' => 'cqu', 'AUR62041347' => 'cqu', 'BcaB01g04574' => 'bca', 'BcaB02g09263' => 'bca', 'BcaB02g10453' => 'bca', 'BcaB05g22513' => 'bca', 'BcaB08g36253' => 'bca', 'BcaB08g36254' => 'bca', 'BcaC01g06519' => 'bca', 'BcaC02g11889' => 'bca', 'BcaC03g14010' => 'bca', 'BcaC03g18439' => 'bca', 'BcaC04g19765' => 'bca', 'BcaC09g48432' => 'bca', 'BcaNung07302' => 'bca', 'BolC2t06040H' => 'bol', 'BolC2t07346H' => 'bol', 'BolC3t13817H' => 'bol', 'BolC4t22625H' => 'bol', 'BolC4t23297H' => 'bol', 'BolC8t51278H' => 'bol', 'BolC9t58050H' => 'bol', 'BolC9t58051H' => 'bol', 'BolC9t60163H' => 'bol', 'BraA02t04712Z' => 'bra', 'BraA02t05791Z' => 'bra', 'BraA03t10483Z' => 'bra', 'BraA05t19795Z' => 'bra', 'BraA05t20276Z' => 'bra', 'BraA09t40827Z' => 'bra', 'BraA10t43750Z' => 'bra', 'BraA10t43751Z' => 'bra', 'BraA10t45370Z' => 'bra', 'C02p00400' => 'bna', 'C02p12460' => 'bna', 'C03p13680' => 'bna', 'C04p10270' => 'bna', 'C04p17500' => 'bna', 'C08p37010' => 'bna', 'C09p51880' => 'bna', 'C09p51890' => 'bna', 'C09p74300' => 'bna', 'CAN.G179.26' => 'can', 'CAN.G3384.1' => 'can', 'CAN.G394.68' => 'can', 'CAN.G907.13' => 'can', 'CANSAT11G0012' => 'cansat', 'CANSAT25G1586' => 'cansat', 'CANSAT35G0735' => 'cansat', 'CANSAT54G0556' => 'cansat', 'CANSAT64G0356' => 'cansat', 'CANSAT78G2042' => 'cansat', 'CARHR125920' => 'chi', 'CARHR131910' => 'chi', 'CARHR172390' => 'chi', 'CARHR211140' => 'chi', 'CARHR285850' => 'chi', 'CARHR285860' => 'chi', 'Carub.0004s1347' => 'cru', 'Carub.0004s1960' => 'cru', 'Carub.0005s2880' => 'cru', 'Carub.0006s0107' => 'cru', 'Carub.0008s2015' => 'cru', 'Carub.0008s2016' => 'cru', 'Carub.0008s2017' => 'cru', 'Ca_01315_v3' => 'car', 'Ca_05063_v3' => 'car', 'Ca_10231_v3' => 'car', 'Ca_10913_v3' => 'car', 'Ca_19156_v3' => 'car', 'Ca_23644_v3' => 'car', 'Ca_26735_v3' => 'car', 'Cc01_g13130' => 'ccan', 'Cc02_g21690' => 'ccan', 'Cc03_g03600' => 'ccan', 'Cc06_g02510' => 'ccan', 'CDE02G1265' => 'cde', 'CDE05G0415' => 'cde', 'CDE08G1082' => 'cde', 'Cfa005780' => 'cfa', 'Cfa011522' => 'cfa', 'Cfa011523' => 'cfa', 'Cfa015627' => 'cfa', 'Cfa017359' => 'cfa', 'Ciclev10005687m.g' => 'ccl', 'Ciclev10012173m.g' => 'ccl', 'Ciclev10021621m.g' => 'ccl', 'Ciclev10028968m.g' => 'ccl', 'Ciclev10029907m.g' => 'ccl', 'CiPaw.01G164800' => 'cil', 'CiPaw.07G083700' => 'cil', 'CiPaw.07G127000' => 'cil', 'CiPaw.07G136900' => 'cil', 'CiPaw.08G081700' => 'cil', 'CiPaw.09G194600' => 'cil', 'CiPaw.10G146500' => 'cil', 'CiPaw.13G091500' => 'cil', 'CiPaw.13G091600' => 'cil', 'ClCG00G003390' => 'cla', 'ClCG01G007220' => 'cla', 'ClCG03G001370' => 'cla', 'ClCG04G008100' => 'cla', 'ClCG06G006110' => 'cla', 'ClCG06G006130' => 'cla', 'ClCG10G021210' => 'cla', 'COL.COLO4_07648' => 'col', 'COL.COLO4_07650' => 'col', 'COL.COLO4_07651' => 'col', 'COL.COLO4_14780' => 'col', 'COL.COLO4_18546' => 'col', 'COL.COLO4_18547' => 'col', 'COL.COLO4_23103' => 'col', 'COL.COLO4_30419' => 'col', 'COL.COLO4_34232' => 'col', 'Cpa.g.sc169.20' => 'cpa', 'Cpa.g.sc57.45' => 'cpa', 'Cpa.g.sc58.124' => 'cpa', 'Cpa.g.sc58.125' => 'cpa', 'Cpa.g.sc81.118' => 'cpa', 'Cpa.g.sc81.119' => 'cpa', 'Cre12.g524700' => 'cre', 'CsaV3_1G034430' => 'csa', 'CsaV3_1G034440' => 'csa', 'CsaV3_1G034450' => 'csa', 'CsaV3_3G034830' => 'csa', 'CsaV3_4G025090' => 'csa', 'CsaV3_5G018660' => 'csa', 'CsaV3_6G038160' => 'csa', 'CSS0003447' => 'camsi', 'CSS0017840' => 'camsi', 'CSS0019260' => 'camsi', 'CSS0040375' => 'camsi', 'CSS0042533' => 'camsi', 'DCAR_005960' => 'dca', 'DCAR_012104' => 'dca', 'DCAR_012105' => 'dca', 'DCAR_012293' => 'dca', 'DCAR_015632' => 'dca', 'DCAR_024602' => 'dca', 'DCAR_028752' => 'dca', 'Dinv06261' => 'din', 'Dinv13982' => 'din', 'Dinv17029' => 'din', 'Dinv18463' => 'din', 'Dinv33181' => 'din', 'Dinv35585' => 'din', 'Dinv37161' => 'din', 'Dinv42977' => 'din', 'Dinv43122' => 'din', 'Dinv44517' => 'din', 'Duzib093G0256' => 'dzi', 'Duzib106G1254' => 'dzi', 'Duzib128G1789' => 'dzi', 'Duzib133G0633' => 'dzi', 'Duzib138G0510' => 'dzi', 'Duzib150G1084' => 'dzi', 'Duzib168G0488' => 'dzi', 'Duzib168G1523' => 'dzi', 'Duzib170G0133' => 'dzi', 'ECA234G1433' => 'eca', 'ECA236G1432' => 'eca', 'ECA236G2256' => 'eca', 'ECA236G2365' => 'eca', 'ECA236G4830' => 'eca', 'ECA248G1505' => 'eca', 'EL10Ac3g06431' => 'bvu', 'EL10Ac5g12577' => 'bvu', 'EL10Ac6g13533' => 'bvu', 'EL10Ac7g16045' => 'bvu', 'Eucgr.A01281' => 'egr', 'Eucgr.B02326' => 'egr', 'Eucgr.H03532' => 'egr', 'Eucgr.K00553' => 'egr', 'Eucgr.K03116' => 'egr', 'FAN02G3963' => 'fan', 'FAN05G0438' => 'fan', 'FAN09G2434' => 'fan', 'FAN12G3984' => 'fan', 'FAN14G0798' => 'fan', 'FAN17G0652' => 'fan', 'FAN19G1988' => 'fan', 'FAN22G0632' => 'fan', 'FAN23G0387' => 'fan', 'FAN26G1323' => 'fan', 'FAN28G0666' => 'fan', 'FvH4_1g26080' => 'fve', 'FvH4_3g36780' => 'fve', 'FvH4_4g15270' => 'fve', 'FvH4_6g13490' => 'fve', 'Glyma.01G098700' => 'gma', 'Glyma.03G065900' => 'gma', 'Glyma.03G073754' => 'gma', 'Glyma.03G073758' => 'gma', 'Glyma.03G083200' => 'gma', 'Glyma.03G225500' => 'gma', 'Glyma.05G037766' => 'gma', 'Glyma.07G133500' => 'gma', 'Glyma.10G139400' => 'gma', 'Glyma.10G248900' => 'gma', 'Glyma.11G137800' => 'gma', 'Glyma.12G061300' => 'gma', 'Glyma.13G337900' => 'gma', 'Glyma.15G036600' => 'gma', 'Glyma.18G182800' => 'gma', 'Glyma.19G222500' => 'gma', 'Glyma.20G144800' => 'gma', 'Gohir.A01G222000' => 'ghi', 'Gohir.A03G044000' => 'ghi', 'Gohir.A03G044100' => 'ghi', 'Gohir.A04G083100' => 'ghi', 'Gohir.A07G127200' => 'ghi', 'Gohir.A07G132400' => 'ghi', 'Gohir.A08G000700' => 'ghi', 'Gohir.A11G327300' => 'ghi', 'Gohir.D01G211500' => 'ghi', 'Gohir.D03G123400' => 'ghi', 'Gohir.D03G123500' => 'ghi', 'Gohir.D04G121800' => 'ghi', 'Gohir.D07G131500' => 'ghi', 'Gohir.D07G136600' => 'ghi', 'Gohir.D08G011600' => 'ghi', 'Gohir.D11G346200' => 'ghi', 'Gorai.001G142800' => 'gra', 'Gorai.001G148700' => 'gra', 'Gorai.002G257300' => 'gra', 'Gorai.003G130000' => 'gra', 'Gorai.003G130100' => 'gra', 'Gorai.004G005300' => 'gra', 'Gorai.007G376500' => 'gra', 'Gorai.012G104700' => 'gra', 'GSVIVG01017946001' => 'vvi', 'GSVIVG01024928001' => 'vvi', 'GSVIVG01028227001' => 'vvi', 'GSVIVG01034151001' => 'vvi', 'HanXRQChr05g0135031' => 'han', 'HanXRQChr05g0135041' => 'han', 'HanXRQChr05g0140021' => 'han', 'HanXRQChr06g0178981' => 'han', 'HanXRQChr07g0188251' => 'han', 'HanXRQChr08g0235311' => 'han', 'HanXRQChr09g0271011' => 'han', 'HanXRQChr10g0293321' => 'han', 'HanXRQChr13g0388171' => 'han', 'Haze_00916' => 'cav', 'Haze_05063' => 'cav', 'Haze_20814' => 'cav', 'Haze_24128' => 'cav', 'Hma1.2p1_0745F.1_g212010' => 'hma', 'Hma1.2p1_0757F.1_g213260' => 'hma', 'Hma1.2p1_0936F.1_g238840' => 'hma', 'Hma1.2p1_1735F.1_g299890' => 'hma', 'Hma1.2p1_1861F.1_g305685' => 'hma', 'HPP92_003397' => 'vpl', 'HPP92_012597' => 'vpl', 'HPP92_015520' => 'vpl', 'HPP92_015539' => 'vpl', 'HPP92_020373' => 'vpl', 'Hund04938' => 'sun', 'Hund10677' => 'sun', 'Hund11033' => 'sun', 'Hund12155' => 'sun', 'Lalb_Chr01g0022551' => 'lal', 'Lalb_Chr03g0042341' => 'lal', 'Lalb_Chr07g0192931' => 'lal', 'Lalb_Chr12g0209551' => 'lal', 'Lalb_Chr19g0125251' => 'lal', 'Lalb_Chr19g0137891' => 'lal', 'Lalb_Chr21g0304641' => 'lal', 'Lalb_Chr21g0309881' => 'lal', 'Lj1A5T12' => 'lonja', 'Lj1C148G10' => 'lonja', 'Lj2A93T83' => 'lonja', 'Lj3A738G68' => 'lonja', 'Lj3C966T1' => 'lonja', 'Lj3g0018958' => 'lja', 'Lj3g0021831' => 'lja', 'Lj3g0025443' => 'lja', 'Lj4g0026809' => 'lja', 'Lj5g0012558' => 'lja', 'Lj5g0021586' => 'lja', 'Lsat_1_v5_gn_5_156840' => 'lsa', 'Lsat_1_v5_gn_8_73460' => 'lsa', 'Lsat_1_v5_gn_8_73481' => 'lsa', 'Lsat_1_v5_gn_9_31601' => 'lsa', 'Lsat_1_v5_gn_9_77320' => 'lsa', 'Manes.01G171300' => 'mes', 'Manes.01G171400' => 'mes', 'Manes.01G236100' => 'mes', 'Manes.02G130500' => 'mes', 'Manes.02G130600' => 'mes', 'Manes.03G180200' => 'mes', 'Manes.05G007000' => 'mes', 'Manes.08G084400' => 'mes', 'Manes.09G092600' => 'mes', 'Manes.15G027900' => 'mes', 'MBI04_g40948_MAGBIO' => 'mbi', 'MBI14_g12123_MAGBIO' => 'mbi', 'MBI18_g28915_MAGBIO' => 'mbi', 'MCO09G053' => 'mco', 'MCO11G782' => 'mco', 'MCO15G215' => 'mco', 'MD03G1088500' => 'mdo', 'MD03G1088600' => 'mdo', 'MD04G1130800' => 'mdo', 'MD09G1291700' => 'mdo', 'MD11G1097500' => 'mdo', 'MD11G1097600' => 'mdo', 'MD12G1143900' => 'mdo', 'MD13G1191400' => 'mdo', 'MD16G1191500' => 'mdo', 'Medtr1g085570' => 'mtr', 'Medtr1g104610' => 'mtr', 'Medtr2g097520' => 'mtr', 'Medtr4g021800' => 'mtr', 'Medtr4g021825' => 'mtr', 'Medtr4g064270' => 'mtr', 'Medtr4g064380' => 'mtr', 'Medtr7g062150' => 'mtr', 'MELO3C003138.2' => 'cme', 'MELO3C005187.2' => 'cme', 'MELO3C009252.2' => 'cme', 'MELO3C014481.2' => 'cme', 'MELO3C020616.2' => 'cme', 'MELO3C020617.2' => 'cme', 'MELO3C020618.2' => 'cme', 'Migut.G00328' => 'egut', 'Migut.J00320' => 'egut', 'Migut.L01000' => 'egut', 'Migut.L01953' => 'egut', 'MSTRG.10253' => 'ama', 'MSTRG.19077' => 'ama', 'MSTRG.26780' => 'ama', 'MSTRG.4023' => 'ama', 'MSTRG.5655' => 'ama', 'MSTRG.9992' => 'ama', 'Nitab4.5_0000043g0310' => 'nta', 'Nitab4.5_0000463g0080' => 'nta', 'Nitab4.5_0000705g0170' => 'nta', 'Nitab4.5_0001326g0060' => 'nta', 'Nitab4.5_0001628g0030' => 'nta', 'Nitab4.5_0002103g0110' => 'nta', 'Nitab4.5_0002946g0030' => 'nta', 'Nitab4.5_0004639g0030' => 'nta', 'Nn2g11149' => 'nnu', 'Nn2g13389' => 'nnu', 'Nn4g25326' => 'nnu', 'Nn4g26290' => 'nnu', 'Nn5g29865' => 'nnu', 'Oeu004163.1' => 'oeu', 'Oeu006901.1' => 'oeu', 'Oeu010096.1' => 'oeu', 'Oeu024340.1' => 'oeu', 'Oeu048369.1' => 'oeu', 'Os01g0973000' => 'osa', 'Os03g0273800' => 'osa', 'Os03g0701200' => 'osa', 'Os03g0834050' => 'osa', 'Os07g0634400' => 'osa', 'Peaxi162Scf00092g01414' => 'pax', 'Peaxi162Scf00165g00818' => 'pax', 'Peaxi162Scf00309g00516' => 'pax', 'Peaxi162Scf00774g00218' => 'pax', 'PGR004G1824' => 'pgr', 'PGR004G2606' => 'pgr', 'PGR031G2716' => 'pgr', 'PGR102G2460' => 'pgr', 'PGR142G2599' => 'pgr', 'PGSC0003DMG400000843' => 'stu', 'PGSC0003DMG400008829' => 'stu', 'PGSC0003DMG400030418' => 'stu', 'PGSC0003DMG400031834' => 'stu', 'PGSC0003DMG401028300' => 'stu', 'PGSC0003DMG402028300' => 'stu', 'Phvul.001G219300' => 'pvu', 'Phvul.007G056000' => 'pvu', 'Phvul.007G208000' => 'pvu', 'Phvul.008G119500' => 'pvu', 'Phvul.010G011200' => 'pvu', 'Phvul.010G014800' => 'pvu', 'Phvul.011G062900' => 'pvu', 'Phvul.L007043' => 'pvu', 'Potri.001G242300' => 'ptr', 'Potri.002G185300' => 'ptr', 'Potri.006G086900' => 'ptr', 'Potri.008G151700' => 'ptr', 'Potri.009G033500' => 'ptr', 'Potri.010G089300' => 'ptr', 'Potri.014G110800' => 'ptr', 'Pp3c27_8130' => 'ppa', 'Pp3c6_27410' => 'ppa', 'PRCOL_00001659' => 'pco', 'PRCOL_00001927' => 'pco', 'PRCOL_00003649' => 'pco', 'Prupe.1G011600' => 'ppe', 'Prupe.3G000800' => 'ppe', 'Prupe.3G001100' => 'ppe', 'Prupe.6G072700' => 'ppe', 'Prupe.6G072800' => 'ppe', 'Prupe.6G257300' => 'ppe', 'Prupe.8G033000' => 'ppe', 'Psat0s2633g0080' => 'psa', 'Psat0s3396g0080' => 'psa', 'Psat0s3396g0200' => 'psa', 'Psat3g139080' => 'psa', 'Psat5g285080' => 'psa', 'Psat6g157760' => 'psa', 'Psat6g208440' => 'psa', 'Psat7g215320' => 'psa', 'Psat7g215400' => 'psa', 'Psat7g235600' => 'psa', 'Psat7g235760' => 'psa', 'PSO063G4603' => 'pso', 'PSO210G0182' => 'pso', 'PSO210G0196' => 'pso', 'PSO339G0394' => 'pso', 'PSO339G4127' => 'pso', 'PSO513G0064' => 'pso', 'PSO761G0079' => 'pso', 'QL01p031003' => 'qlo', 'QL01p031078' => 'qlo', 'QL06p003004' => 'qlo', 'QL07p048731' => 'qlo', 'QL09p037427' => 'qlo', 'RcHm_v2.0_Chr3g0466361' => 'rch', 'RcHm_v2.0_Chr3g0485571' => 'rch', 'RcHm_v2.0_Chr4g0416551' => 'rch', 'RcHm_v2.0_Chr5g0065831' => 'rch', 'Rhsim01G0230500' => 'rsi', 'Rhsim05G0194000' => 'rsi', 'Rhsim08G0250400' => 'rsi', 'Sabra02G0131000' => 'sbr', 'Sabra06G0066300' => 'sbr', 'Sabra08G0115500' => 'sbr', 'Sabra09G0023900' => 'sbr', 'Sabra10G0054000' => 'sbr', 'Sabra14G0081500' => 'sbr', 'Sabra16G0147100' => 'sbr', 'SalBow2G2957' => 'sbo', 'SalBow4G3320' => 'sbo', 'SalBow8G1894' => 'sbo', 'Sc07g0007950' => 'sci', 'Sc12g0001360' => 'sci', 'Sc13g0004330' => 'sci', 'Sc20g0005010' => 'sci', 'Sed0000361' => 'sed', 'Sed0001706' => 'sed', 'Sed0002422' => 'sed', 'Sed0004029' => 'sed', 'Sed0004602' => 'sed', 'Sed0004943' => 'sed', 'Sed0008646' => 'sed', 'Sed0023313' => 'sed', 'Sed0024843' => 'sed', 'SEGI_00081' => 'sgi', 'SEGI_00947' => 'sgi', 'SEGI_04046' => 'sgi', 'SEGI_06880' => 'sgi', 'SEGI_09736' => 'sgi', 'SEGI_12741' => 'sgi', 'SEGI_14530' => 'sgi', 'SEGI_20705' => 'sgi', 'SEGI_26088' => 'sgi', 'SEGI_28323' => 'sgi', 'SEGI_33343' => 'sgi', 'SGA_v2.0_scaffold126G33775' => 'sas', 'SGA_v2.0_scaffold2G01337' => 'sas', 'SGA_v2.0_scaffold38G15006' => 'sas', 'SGA_v2.0_scaffold39G15264' => 'sas', 'SGA_v2.0_scaffold453G51880' => 'sas', 'SHI12696' => 'shi', 'SMO367G1096' => 'smo', 'Solyc01g068630.3' => 'sly', 'Solyc05g011880.3' => 'sly', 'Solyc06g076300.3' => 'sly', 'Solyc09g010940.4' => 'sly', 'Solyc09g075890.3' => 'sly', 'Sopen01g030560' => 'spe', 'Sopen05g006630' => 'spe', 'Sopen06g032720' => 'spe', 'Sopen09g005660' => 'spe', 'Sopen09g030690' => 'spe', 'Sp4g14540' => 'spa', 'Sp4g20030' => 'spa', 'Sp5g01320' => 'spa', 'Sp6g21170' => 'spa', 'Sp6g21180' => 'spa', 'Sp6g21190' => 'spa', 'Sp6g40220' => 'spa', 'TAR362G0122' => 'tar', 'TAR362G1338' => 'tar', 'TAR369G0590' => 'tar', 'TAR371G0824' => 'tar', 'TAR622G1429' => 'tar', 'TAR623G0734' => 'tar', 'TAR625G0441' => 'tar', 'TAR629G0976' => 'tar', 'TAR633G1195' => 'tar', 'TAR636G2660' => 'tar', 'THA.LOC104799440' => 'tha', 'THA.LOC104800966' => 'tha', 'THA.LOC104806559' => 'tha', 'THA.LOC104810765' => 'tha', 'THA.LOC104816266' => 'tha', 'THA.LOC104817419' => 'tha', 'THA.LOC104827021' => 'tha', 'Thecc.01G327400' => 'tca', 'Thecc.04G229200' => 'tca', 'Thecc.05G037400' => 'tca', 'Thecc.09G318600' => 'tca', 'Thecc.09G318700' => 'tca', 'Thhalv10006238m.g' => 'esa', 'Thhalv10014321m.g' => 'esa', 'Thhalv10014335m.g' => 'esa', 'Thhalv10015826m.g' => 'esa', 'Thhalv10017107m.g' => 'esa', 'Thhalv10017180m.g' => 'esa', 'Thhalv10029339m.g' => 'esa', 'TPR.G1699' => 'tpr', 'TPR.G23609' => 'tpr', 'TPR.G3081' => 'tpr', 'TPR.G40397' => 'tpr', 'TPR.G5522' => 'tpr', 'TPR.G5618' => 'tpr', 'TPR.G5626' => 'tpr', 'TWI09G1632' => 'twi', 'TWI23G1230' => 'twi', 'TWI53G1064' => 'twi', 'TWI59G0751' => 'twi', 'TWI74G0947' => 'twi', 'TWI77G0337' => 'twi', 'TWI79G1254' => 'twi', 'unitig_0.g2341' => 'ugi', 'unitig_26.g10006' => 'ugi', 'unitig_26.g10008' => 'ugi', 'unitig_26.g9192' => 'ugi', 'vmacro14547' => 'vma', 'vmacro15333' => 'vma', 'vmacro18743' => 'vma', 'vmacro20166' => 'vma', 'VMungo0331G0523' => 'vmu', 'VMungo0331G1202' => 'vmu', 'VMungo0720G1228' => 'vmu', 'VMungo0720G1514' => 'vmu', 'VMungo1080G0169' => 'vmu', 'VMungo1127G1475' => 'vmu', 'VMungo1383G1208' => 'vmu', 'VMungo1383G1698' => 'vmu', 'Zm00001eb012270' => 'zma', 'Zm00001eb054100' => 'zma', 'Zm00001eb063350' => 'zma', 'Zm00001eb328560' => 'zma', 'Zm00001eb342820' => 'zma', 'Zm00001eb362210' => 'zma', 'Zm00001eb397730' => 'zma', 'Zm00001eb399750' => 'zma' ) $gf_id = 'HOM05D000959' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000959' ) $data_identifier = 'HOM05D000959' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 5, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 5, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 10, 'mbi' => (int) 3, 'mco' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 2, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 3, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 11, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399750' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000959', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '622', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p07100' => 'bna', 'A03p11720' => 'bna', 'A05p08300' => 'bna', 'A05p13380' => 'bna', 'A09p54130' => 'bna', 'A10p16690' => 'bna', 'A10p16700' => 'bna', 'A10p33390' => 'bna', 'Aa31LG10G16020' => 'aar', 'Aa31LG1G11810' => 'aar', 'Aa31LG1G11830' => 'aar', 'Aa31LG1G22510' => 'aar', 'Aa31LG5G4890' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5793' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2310' => 'aag', 'Actinidia08499' => 'ach', 'Actinidia11262' => 'ach', 'Actinidia23926' => 'ach', 'Actinidia34420' => 'ach', 'Actinidia36970' => 'ach', 'Ah.02g111220' => 'amhyb', 'Ah.15g097750' => 'amhyb', 'AL4G27500' => 'aly', 'AL6G11470' => 'aly', 'AL8G35950' => 'aly', 'AL8G35960' => 'aly', 'AL8G35970' => 'aly', 'Aqoxy1G00912' => 'aox', 'Aqoxy2G02253' => 'aox', 'Aqoxy2G02411' => 'aox', 'Aqoxy5G00485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BZ66YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K8ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM4FUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6BF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HFV7XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25JBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0YNNV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MAKK6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P70IT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP2Z6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V61LZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YWP64R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3S9AI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7PGHH' => 'arhy', 'AT2G32150' => 'ath', 'AT3G62040' => 'ath', 'AT5G02230' => 'ath', 'AT5G59480' => 'ath', 'AT5G59490' => 'ath', 'ATR0332G060' => 'atr', 'ATR0559G190' => 'atr', 'ATR0693G294' => 'atr', 'Atru.chr3.3975' => 'acertr', 'Atru.chr3.3976' => 'acertr', 'Atru.chr3.3977' => 'acertr', 'Atru.chr4.2498' => 'acertr', 'Atru.chr5.838' => 'acertr', 'Atru.chr8.1990' => 'acertr', 'Atru.chr8.1991' => 'acertr', 'Atru.chr8.1992' => 'acertr', 'AUR62001759' => 'cqu', 'AUR62009545' => 'cqu', 'AUR62010474' => 'cqu', 'AUR62025820' => 'cqu', 'AUR62030422' => 'cqu', 'AUR62033605' => 'cqu', 'AUR62038615' => 'cqu', 'AUR62041347' => 'cqu', 'BcaB01g04574' => 'bca', 'BcaB02g09263' => 'bca', 'BcaB02g10453' => 'bca', 'BcaB05g22513' => 'bca', 'BcaB08g36253' => 'bca', 'BcaB08g36254' => 'bca', 'BcaC01g06519' => 'bca', 'BcaC02g11889' => 'bca', 'BcaC03g14010' => 'bca', 'BcaC03g18439' => 'bca', 'BcaC04g19765' => 'bca', 'BcaC09g48432' => 'bca', 'BcaNung07302' => 'bca', 'BolC2t06040H' => 'bol', 'BolC2t07346H' => 'bol', 'BolC3t13817H' => 'bol', 'BolC4t22625H' => 'bol', 'BolC4t23297H' => 'bol', 'BolC8t51278H' => 'bol', 'BolC9t58050H' => 'bol', 'BolC9t58051H' => 'bol', 'BolC9t60163H' => 'bol', 'BraA02t04712Z' => 'bra', 'BraA02t05791Z' => 'bra', 'BraA03t10483Z' => 'bra', 'BraA05t19795Z' => 'bra', 'BraA05t20276Z' => 'bra', 'BraA09t40827Z' => 'bra', 'BraA10t43750Z' => 'bra', 'BraA10t43751Z' => 'bra', 'BraA10t45370Z' => 'bra', 'C02p00400' => 'bna', 'C02p12460' => 'bna', 'C03p13680' => 'bna', 'C04p10270' => 'bna', 'C04p17500' => 'bna', 'C08p37010' => 'bna', 'C09p51880' => 'bna', 'C09p51890' => 'bna', 'C09p74300' => 'bna', 'CAN.G179.26' => 'can', 'CAN.G3384.1' => 'can', 'CAN.G394.68' => 'can', 'CAN.G907.13' => 'can', 'CANSAT11G0012' => 'cansat', 'CANSAT25G1586' => 'cansat', 'CANSAT35G0735' => 'cansat', 'CANSAT54G0556' => 'cansat', 'CANSAT64G0356' => 'cansat', 'CANSAT78G2042' => 'cansat', 'CARHR125920' => 'chi', 'CARHR131910' => 'chi', 'CARHR172390' => 'chi', 'CARHR211140' => 'chi', 'CARHR285850' => 'chi', 'CARHR285860' => 'chi', 'Carub.0004s1347' => 'cru', 'Carub.0004s1960' => 'cru', 'Carub.0005s2880' => 'cru', 'Carub.0006s0107' => 'cru', 'Carub.0008s2015' => 'cru', 'Carub.0008s2016' => 'cru', 'Carub.0008s2017' => 'cru', 'Ca_01315_v3' => 'car', 'Ca_05063_v3' => 'car', 'Ca_10231_v3' => 'car', 'Ca_10913_v3' => 'car', 'Ca_19156_v3' => 'car', 'Ca_23644_v3' => 'car', 'Ca_26735_v3' => 'car', 'Cc01_g13130' => 'ccan', 'Cc02_g21690' => 'ccan', 'Cc03_g03600' => 'ccan', 'Cc06_g02510' => 'ccan', 'CDE02G1265' => 'cde', 'CDE05G0415' => 'cde', 'CDE08G1082' => 'cde', 'Cfa005780' => 'cfa', 'Cfa011522' => 'cfa', 'Cfa011523' => 'cfa', 'Cfa015627' => 'cfa', 'Cfa017359' => 'cfa', 'Ciclev10005687m.g' => 'ccl', 'Ciclev10012173m.g' => 'ccl', 'Ciclev10021621m.g' => 'ccl', 'Ciclev10028968m.g' => 'ccl', 'Ciclev10029907m.g' => 'ccl', 'CiPaw.01G164800' => 'cil', 'CiPaw.07G083700' => 'cil', 'CiPaw.07G127000' => 'cil', 'CiPaw.07G136900' => 'cil', 'CiPaw.08G081700' => 'cil', 'CiPaw.09G194600' => 'cil', 'CiPaw.10G146500' => 'cil', 'CiPaw.13G091500' => 'cil', 'CiPaw.13G091600' => 'cil', 'ClCG00G003390' => 'cla', 'ClCG01G007220' => 'cla', 'ClCG03G001370' => 'cla', 'ClCG04G008100' => 'cla', 'ClCG06G006110' => 'cla', 'ClCG06G006130' => 'cla', 'ClCG10G021210' => 'cla', 'COL.COLO4_07648' => 'col', 'COL.COLO4_07650' => 'col', 'COL.COLO4_07651' => 'col', 'COL.COLO4_14780' => 'col', 'COL.COLO4_18546' => 'col', 'COL.COLO4_18547' => 'col', 'COL.COLO4_23103' => 'col', 'COL.COLO4_30419' => 'col', 'COL.COLO4_34232' => 'col', 'Cpa.g.sc169.20' => 'cpa', 'Cpa.g.sc57.45' => 'cpa', 'Cpa.g.sc58.124' => 'cpa', 'Cpa.g.sc58.125' => 'cpa', 'Cpa.g.sc81.118' => 'cpa', 'Cpa.g.sc81.119' => 'cpa', 'Cre12.g524700' => 'cre', 'CsaV3_1G034430' => 'csa', 'CsaV3_1G034440' => 'csa', 'CsaV3_1G034450' => 'csa', 'CsaV3_3G034830' => 'csa', 'CsaV3_4G025090' => 'csa', 'CsaV3_5G018660' => 'csa', 'CsaV3_6G038160' => 'csa', 'CSS0003447' => 'camsi', 'CSS0017840' => 'camsi', 'CSS0019260' => 'camsi', 'CSS0040375' => 'camsi', 'CSS0042533' => 'camsi', 'DCAR_005960' => 'dca', 'DCAR_012104' => 'dca', 'DCAR_012105' => 'dca', 'DCAR_012293' => 'dca', 'DCAR_015632' => 'dca', 'DCAR_024602' => 'dca', 'DCAR_028752' => 'dca', 'Dinv06261' => 'din', 'Dinv13982' => 'din', 'Dinv17029' => 'din', 'Dinv18463' => 'din', 'Dinv33181' => 'din', 'Dinv35585' => 'din', 'Dinv37161' => 'din', 'Dinv42977' => 'din', 'Dinv43122' => 'din', 'Dinv44517' => 'din', 'Duzib093G0256' => 'dzi', 'Duzib106G1254' => 'dzi', 'Duzib128G1789' => 'dzi', 'Duzib133G0633' => 'dzi', 'Duzib138G0510' => 'dzi', 'Duzib150G1084' => 'dzi', 'Duzib168G0488' => 'dzi', 'Duzib168G1523' => 'dzi', 'Duzib170G0133' => 'dzi', 'ECA234G1433' => 'eca', 'ECA236G1432' => 'eca', 'ECA236G2256' => 'eca', 'ECA236G2365' => 'eca', 'ECA236G4830' => 'eca', 'ECA248G1505' => 'eca', 'EL10Ac3g06431' => 'bvu', 'EL10Ac5g12577' => 'bvu', 'EL10Ac6g13533' => 'bvu', 'EL10Ac7g16045' => 'bvu', 'Eucgr.A01281' => 'egr', 'Eucgr.B02326' => 'egr', 'Eucgr.H03532' => 'egr', 'Eucgr.K00553' => 'egr', 'Eucgr.K03116' => 'egr', 'FAN02G3963' => 'fan', 'FAN05G0438' => 'fan', 'FAN09G2434' => 'fan', 'FAN12G3984' => 'fan', 'FAN14G0798' => 'fan', 'FAN17G0652' => 'fan', 'FAN19G1988' => 'fan', 'FAN22G0632' => 'fan', 'FAN23G0387' => 'fan', 'FAN26G1323' => 'fan', 'FAN28G0666' => 'fan', 'FvH4_1g26080' => 'fve', 'FvH4_3g36780' => 'fve', 'FvH4_4g15270' => 'fve', 'FvH4_6g13490' => 'fve', 'Glyma.01G098700' => 'gma', 'Glyma.03G065900' => 'gma', 'Glyma.03G073754' => 'gma', 'Glyma.03G073758' => 'gma', 'Glyma.03G083200' => 'gma', 'Glyma.03G225500' => 'gma', 'Glyma.05G037766' => 'gma', 'Glyma.07G133500' => 'gma', 'Glyma.10G139400' => 'gma', 'Glyma.10G248900' => 'gma', 'Glyma.11G137800' => 'gma', 'Glyma.12G061300' => 'gma', 'Glyma.13G337900' => 'gma', 'Glyma.15G036600' => 'gma', 'Glyma.18G182800' => 'gma', 'Glyma.19G222500' => 'gma', 'Glyma.20G144800' => 'gma', 'Gohir.A01G222000' => 'ghi', 'Gohir.A03G044000' => 'ghi', 'Gohir.A03G044100' => 'ghi', 'Gohir.A04G083100' => 'ghi', 'Gohir.A07G127200' => 'ghi', 'Gohir.A07G132400' => 'ghi', 'Gohir.A08G000700' => 'ghi', 'Gohir.A11G327300' => 'ghi', 'Gohir.D01G211500' => 'ghi', 'Gohir.D03G123400' => 'ghi', 'Gohir.D03G123500' => 'ghi', 'Gohir.D04G121800' => 'ghi', 'Gohir.D07G131500' => 'ghi', 'Gohir.D07G136600' => 'ghi', 'Gohir.D08G011600' => 'ghi', 'Gohir.D11G346200' => 'ghi', 'Gorai.001G142800' => 'gra', 'Gorai.001G148700' => 'gra', 'Gorai.002G257300' => 'gra', 'Gorai.003G130000' => 'gra', 'Gorai.003G130100' => 'gra', 'Gorai.004G005300' => 'gra', 'Gorai.007G376500' => 'gra', 'Gorai.012G104700' => 'gra', 'GSVIVG01017946001' => 'vvi', 'GSVIVG01024928001' => 'vvi', 'GSVIVG01028227001' => 'vvi', 'GSVIVG01034151001' => 'vvi', 'HanXRQChr05g0135031' => 'han', 'HanXRQChr05g0135041' => 'han', 'HanXRQChr05g0140021' => 'han', 'HanXRQChr06g0178981' => 'han', 'HanXRQChr07g0188251' => 'han', 'HanXRQChr08g0235311' => 'han', 'HanXRQChr09g0271011' => 'han', 'HanXRQChr10g0293321' => 'han', 'HanXRQChr13g0388171' => 'han', 'Haze_00916' => 'cav', 'Haze_05063' => 'cav', 'Haze_20814' => 'cav', 'Haze_24128' => 'cav', 'Hma1.2p1_0745F.1_g212010' => 'hma', 'Hma1.2p1_0757F.1_g213260' => 'hma', 'Hma1.2p1_0936F.1_g238840' => 'hma', 'Hma1.2p1_1735F.1_g299890' => 'hma', 'Hma1.2p1_1861F.1_g305685' => 'hma', 'HPP92_003397' => 'vpl', 'HPP92_012597' => 'vpl', 'HPP92_015520' => 'vpl', 'HPP92_015539' => 'vpl', 'HPP92_020373' => 'vpl', 'Hund04938' => 'sun', 'Hund10677' => 'sun', 'Hund11033' => 'sun', 'Hund12155' => 'sun', 'Lalb_Chr01g0022551' => 'lal', 'Lalb_Chr03g0042341' => 'lal', 'Lalb_Chr07g0192931' => 'lal', 'Lalb_Chr12g0209551' => 'lal', 'Lalb_Chr19g0125251' => 'lal', 'Lalb_Chr19g0137891' => 'lal', 'Lalb_Chr21g0304641' => 'lal', 'Lalb_Chr21g0309881' => 'lal', 'Lj1A5T12' => 'lonja', 'Lj1C148G10' => 'lonja', 'Lj2A93T83' => 'lonja', 'Lj3A738G68' => 'lonja', 'Lj3C966T1' => 'lonja', 'Lj3g0018958' => 'lja', 'Lj3g0021831' => 'lja', 'Lj3g0025443' => 'lja', 'Lj4g0026809' => 'lja', 'Lj5g0012558' => 'lja', 'Lj5g0021586' => 'lja', 'Lsat_1_v5_gn_5_156840' => 'lsa', 'Lsat_1_v5_gn_8_73460' => 'lsa', 'Lsat_1_v5_gn_8_73481' => 'lsa', 'Lsat_1_v5_gn_9_31601' => 'lsa', 'Lsat_1_v5_gn_9_77320' => 'lsa', 'Manes.01G171300' => 'mes', 'Manes.01G171400' => 'mes', 'Manes.01G236100' => 'mes', 'Manes.02G130500' => 'mes', 'Manes.02G130600' => 'mes', 'Manes.03G180200' => 'mes', 'Manes.05G007000' => 'mes', 'Manes.08G084400' => 'mes', 'Manes.09G092600' => 'mes', 'Manes.15G027900' => 'mes', 'MBI04_g40948_MAGBIO' => 'mbi', 'MBI14_g12123_MAGBIO' => 'mbi', 'MBI18_g28915_MAGBIO' => 'mbi', 'MCO09G053' => 'mco', 'MCO11G782' => 'mco', 'MCO15G215' => 'mco', 'MD03G1088500' => 'mdo', 'MD03G1088600' => 'mdo', 'MD04G1130800' => 'mdo', 'MD09G1291700' => 'mdo', 'MD11G1097500' => 'mdo', 'MD11G1097600' => 'mdo', 'MD12G1143900' => 'mdo', 'MD13G1191400' => 'mdo', 'MD16G1191500' => 'mdo', 'Medtr1g085570' => 'mtr', 'Medtr1g104610' => 'mtr', 'Medtr2g097520' => 'mtr', 'Medtr4g021800' => 'mtr', 'Medtr4g021825' => 'mtr', 'Medtr4g064270' => 'mtr', 'Medtr4g064380' => 'mtr', 'Medtr7g062150' => 'mtr', 'MELO3C003138.2' => 'cme', 'MELO3C005187.2' => 'cme', 'MELO3C009252.2' => 'cme', 'MELO3C014481.2' => 'cme', 'MELO3C020616.2' => 'cme', 'MELO3C020617.2' => 'cme', 'MELO3C020618.2' => 'cme', 'Migut.G00328' => 'egut', 'Migut.J00320' => 'egut', 'Migut.L01000' => 'egut', 'Migut.L01953' => 'egut', 'MSTRG.10253' => 'ama', 'MSTRG.19077' => 'ama', 'MSTRG.26780' => 'ama', 'MSTRG.4023' => 'ama', 'MSTRG.5655' => 'ama', 'MSTRG.9992' => 'ama', 'Nitab4.5_0000043g0310' => 'nta', 'Nitab4.5_0000463g0080' => 'nta', 'Nitab4.5_0000705g0170' => 'nta', 'Nitab4.5_0001326g0060' => 'nta', 'Nitab4.5_0001628g0030' => 'nta', 'Nitab4.5_0002103g0110' => 'nta', 'Nitab4.5_0002946g0030' => 'nta', 'Nitab4.5_0004639g0030' => 'nta', 'Nn2g11149' => 'nnu', 'Nn2g13389' => 'nnu', 'Nn4g25326' => 'nnu', 'Nn4g26290' => 'nnu', 'Nn5g29865' => 'nnu', 'Oeu004163.1' => 'oeu', 'Oeu006901.1' => 'oeu', 'Oeu010096.1' => 'oeu', 'Oeu024340.1' => 'oeu', 'Oeu048369.1' => 'oeu', 'Os01g0973000' => 'osa', 'Os03g0273800' => 'osa', 'Os03g0701200' => 'osa', 'Os03g0834050' => 'osa', 'Os07g0634400' => 'osa', 'Peaxi162Scf00092g01414' => 'pax', 'Peaxi162Scf00165g00818' => 'pax', 'Peaxi162Scf00309g00516' => 'pax', 'Peaxi162Scf00774g00218' => 'pax', 'PGR004G1824' => 'pgr', 'PGR004G2606' => 'pgr', 'PGR031G2716' => 'pgr', 'PGR102G2460' => 'pgr', 'PGR142G2599' => 'pgr', 'PGSC0003DMG400000843' => 'stu', 'PGSC0003DMG400008829' => 'stu', 'PGSC0003DMG400030418' => 'stu', 'PGSC0003DMG400031834' => 'stu', 'PGSC0003DMG401028300' => 'stu', 'PGSC0003DMG402028300' => 'stu', 'Phvul.001G219300' => 'pvu', 'Phvul.007G056000' => 'pvu', 'Phvul.007G208000' => 'pvu', 'Phvul.008G119500' => 'pvu', 'Phvul.010G011200' => 'pvu', 'Phvul.010G014800' => 'pvu', 'Phvul.011G062900' => 'pvu', 'Phvul.L007043' => 'pvu', 'Potri.001G242300' => 'ptr', 'Potri.002G185300' => 'ptr', 'Potri.006G086900' => 'ptr', 'Potri.008G151700' => 'ptr', 'Potri.009G033500' => 'ptr', 'Potri.010G089300' => 'ptr', 'Potri.014G110800' => 'ptr', 'Pp3c27_8130' => 'ppa', 'Pp3c6_27410' => 'ppa', 'PRCOL_00001659' => 'pco', 'PRCOL_00001927' => 'pco', 'PRCOL_00003649' => 'pco', 'Prupe.1G011600' => 'ppe', 'Prupe.3G000800' => 'ppe', 'Prupe.3G001100' => 'ppe', 'Prupe.6G072700' => 'ppe', 'Prupe.6G072800' => 'ppe', 'Prupe.6G257300' => 'ppe', 'Prupe.8G033000' => 'ppe', 'Psat0s2633g0080' => 'psa', 'Psat0s3396g0080' => 'psa', 'Psat0s3396g0200' => 'psa', 'Psat3g139080' => 'psa', 'Psat5g285080' => 'psa', 'Psat6g157760' => 'psa', 'Psat6g208440' => 'psa', 'Psat7g215320' => 'psa', 'Psat7g215400' => 'psa', 'Psat7g235600' => 'psa', 'Psat7g235760' => 'psa', 'PSO063G4603' => 'pso', 'PSO210G0182' => 'pso', 'PSO210G0196' => 'pso', 'PSO339G0394' => 'pso', 'PSO339G4127' => 'pso', 'PSO513G0064' => 'pso', 'PSO761G0079' => 'pso', 'QL01p031003' => 'qlo', 'QL01p031078' => 'qlo', 'QL06p003004' => 'qlo', 'QL07p048731' => 'qlo', 'QL09p037427' => 'qlo', 'RcHm_v2.0_Chr3g0466361' => 'rch', 'RcHm_v2.0_Chr3g0485571' => 'rch', 'RcHm_v2.0_Chr4g0416551' => 'rch', 'RcHm_v2.0_Chr5g0065831' => 'rch', 'Rhsim01G0230500' => 'rsi', 'Rhsim05G0194000' => 'rsi', 'Rhsim08G0250400' => 'rsi', 'Sabra02G0131000' => 'sbr', 'Sabra06G0066300' => 'sbr', 'Sabra08G0115500' => 'sbr', 'Sabra09G0023900' => 'sbr', 'Sabra10G0054000' => 'sbr', 'Sabra14G0081500' => 'sbr', 'Sabra16G0147100' => 'sbr', 'SalBow2G2957' => 'sbo', 'SalBow4G3320' => 'sbo', 'SalBow8G1894' => 'sbo', 'Sc07g0007950' => 'sci', 'Sc12g0001360' => 'sci', 'Sc13g0004330' => 'sci', 'Sc20g0005010' => 'sci', 'Sed0000361' => 'sed', 'Sed0001706' => 'sed', 'Sed0002422' => 'sed', 'Sed0004029' => 'sed', 'Sed0004602' => 'sed', 'Sed0004943' => 'sed', 'Sed0008646' => 'sed', 'Sed0023313' => 'sed', 'Sed0024843' => 'sed', 'SEGI_00081' => 'sgi', 'SEGI_00947' => 'sgi', 'SEGI_04046' => 'sgi', 'SEGI_06880' => 'sgi', 'SEGI_09736' => 'sgi', 'SEGI_12741' => 'sgi', 'SEGI_14530' => 'sgi', 'SEGI_20705' => 'sgi', 'SEGI_26088' => 'sgi', 'SEGI_28323' => 'sgi', 'SEGI_33343' => 'sgi', 'SGA_v2.0_scaffold126G33775' => 'sas', 'SGA_v2.0_scaffold2G01337' => 'sas', 'SGA_v2.0_scaffold38G15006' => 'sas', 'SGA_v2.0_scaffold39G15264' => 'sas', 'SGA_v2.0_scaffold453G51880' => 'sas', 'SHI12696' => 'shi', 'SMO367G1096' => 'smo', 'Solyc01g068630.3' => 'sly', 'Solyc05g011880.3' => 'sly', 'Solyc06g076300.3' => 'sly', 'Solyc09g010940.4' => 'sly', 'Solyc09g075890.3' => 'sly', 'Sopen01g030560' => 'spe', 'Sopen05g006630' => 'spe', 'Sopen06g032720' => 'spe', 'Sopen09g005660' => 'spe', 'Sopen09g030690' => 'spe', 'Sp4g14540' => 'spa', 'Sp4g20030' => 'spa', 'Sp5g01320' => 'spa', 'Sp6g21170' => 'spa', 'Sp6g21180' => 'spa', 'Sp6g21190' => 'spa', 'Sp6g40220' => 'spa', 'TAR362G0122' => 'tar', 'TAR362G1338' => 'tar', 'TAR369G0590' => 'tar', 'TAR371G0824' => 'tar', 'TAR622G1429' => 'tar', 'TAR623G0734' => 'tar', 'TAR625G0441' => 'tar', 'TAR629G0976' => 'tar', 'TAR633G1195' => 'tar', 'TAR636G2660' => 'tar', 'THA.LOC104799440' => 'tha', 'THA.LOC104800966' => 'tha', 'THA.LOC104806559' => 'tha', 'THA.LOC104810765' => 'tha', 'THA.LOC104816266' => 'tha', 'THA.LOC104817419' => 'tha', 'THA.LOC104827021' => 'tha', 'Thecc.01G327400' => 'tca', 'Thecc.04G229200' => 'tca', 'Thecc.05G037400' => 'tca', 'Thecc.09G318600' => 'tca', 'Thecc.09G318700' => 'tca', 'Thhalv10006238m.g' => 'esa', 'Thhalv10014321m.g' => 'esa', 'Thhalv10014335m.g' => 'esa', 'Thhalv10015826m.g' => 'esa', 'Thhalv10017107m.g' => 'esa', 'Thhalv10017180m.g' => 'esa', 'Thhalv10029339m.g' => 'esa', 'TPR.G1699' => 'tpr', 'TPR.G23609' => 'tpr', 'TPR.G3081' => 'tpr', 'TPR.G40397' => 'tpr', 'TPR.G5522' => 'tpr', 'TPR.G5618' => 'tpr', 'TPR.G5626' => 'tpr', 'TWI09G1632' => 'twi', 'TWI23G1230' => 'twi', 'TWI53G1064' => 'twi', 'TWI59G0751' => 'twi', 'TWI74G0947' => 'twi', 'TWI77G0337' => 'twi', 'TWI79G1254' => 'twi', 'unitig_0.g2341' => 'ugi', 'unitig_26.g10006' => 'ugi', 'unitig_26.g10008' => 'ugi', 'unitig_26.g9192' => 'ugi', 'vmacro14547' => 'vma', 'vmacro15333' => 'vma', 'vmacro18743' => 'vma', 'vmacro20166' => 'vma', 'VMungo0331G0523' => 'vmu', 'VMungo0331G1202' => 'vmu', 'VMungo0720G1228' => 'vmu', 'VMungo0720G1514' => 'vmu', 'VMungo1080G0169' => 'vmu', 'VMungo1127G1475' => 'vmu', 'VMungo1383G1208' => 'vmu', 'VMungo1383G1698' => 'vmu', 'Zm00001eb012270' => 'zma', 'Zm00001eb054100' => 'zma', 'Zm00001eb063350' => 'zma', 'Zm00001eb328560' => 'zma', 'Zm00001eb342820' => 'zma', 'Zm00001eb362210' => 'zma', 'Zm00001eb397730' => 'zma', 'Zm00001eb399750' => 'zma' ), 'gf_id' => 'HOM05D000959', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000959' ), 'data_identifier' => 'HOM05D000959', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000959', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '622', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p07100' => 'bna', 'A03p11720' => 'bna', 'A05p08300' => 'bna', 'A05p13380' => 'bna', 'A09p54130' => 'bna', 'A10p16690' => 'bna', 'A10p16700' => 'bna', 'A10p33390' => 'bna', 'Aa31LG10G16020' => 'aar', 'Aa31LG1G11810' => 'aar', 'Aa31LG1G11830' => 'aar', 'Aa31LG1G22510' => 'aar', 'Aa31LG5G4890' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5793' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2310' => 'aag', 'Actinidia08499' => 'ach', 'Actinidia11262' => 'ach', 'Actinidia23926' => 'ach', 'Actinidia34420' => 'ach', 'Actinidia36970' => 'ach', 'Ah.02g111220' => 'amhyb', 'Ah.15g097750' => 'amhyb', 'AL4G27500' => 'aly', 'AL6G11470' => 'aly', 'AL8G35950' => 'aly', 'AL8G35960' => 'aly', 'AL8G35970' => 'aly', 'Aqoxy1G00912' => 'aox', 'Aqoxy2G02253' => 'aox', 'Aqoxy2G02411' => 'aox', 'Aqoxy5G00485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BZ66YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K8ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM4FUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6BF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HFV7XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25JBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0YNNV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MAKK6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P70IT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP2Z6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V61LZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YWP64R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3S9AI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7PGHH' => 'arhy', 'AT2G32150' => 'ath', 'AT3G62040' => 'ath', 'AT5G02230' => 'ath', 'AT5G59480' => 'ath', 'AT5G59490' => 'ath', 'ATR0332G060' => 'atr', 'ATR0559G190' => 'atr', 'ATR0693G294' => 'atr', 'Atru.chr3.3975' => 'acertr', 'Atru.chr3.3976' => 'acertr', 'Atru.chr3.3977' => 'acertr', 'Atru.chr4.2498' => 'acertr', 'Atru.chr5.838' => 'acertr', 'Atru.chr8.1990' => 'acertr', 'Atru.chr8.1991' => 'acertr', 'Atru.chr8.1992' => 'acertr', 'AUR62001759' => 'cqu', 'AUR62009545' => 'cqu', 'AUR62010474' => 'cqu', 'AUR62025820' => 'cqu', 'AUR62030422' => 'cqu', 'AUR62033605' => 'cqu', 'AUR62038615' => 'cqu', 'AUR62041347' => 'cqu', 'BcaB01g04574' => 'bca', 'BcaB02g09263' => 'bca', 'BcaB02g10453' => 'bca', 'BcaB05g22513' => 'bca', 'BcaB08g36253' => 'bca', 'BcaB08g36254' => 'bca', 'BcaC01g06519' => 'bca', 'BcaC02g11889' => 'bca', 'BcaC03g14010' => 'bca', 'BcaC03g18439' => 'bca', 'BcaC04g19765' => 'bca', 'BcaC09g48432' => 'bca', 'BcaNung07302' => 'bca', 'BolC2t06040H' => 'bol', 'BolC2t07346H' => 'bol', 'BolC3t13817H' => 'bol', 'BolC4t22625H' => 'bol', 'BolC4t23297H' => 'bol', 'BolC8t51278H' => 'bol', 'BolC9t58050H' => 'bol', 'BolC9t58051H' => 'bol', 'BolC9t60163H' => 'bol', 'BraA02t04712Z' => 'bra', 'BraA02t05791Z' => 'bra', 'BraA03t10483Z' => 'bra', 'BraA05t19795Z' => 'bra', 'BraA05t20276Z' => 'bra', 'BraA09t40827Z' => 'bra', 'BraA10t43750Z' => 'bra', 'BraA10t43751Z' => 'bra', 'BraA10t45370Z' => 'bra', 'C02p00400' => 'bna', 'C02p12460' => 'bna', 'C03p13680' => 'bna', 'C04p10270' => 'bna', 'C04p17500' => 'bna', 'C08p37010' => 'bna', 'C09p51880' => 'bna', 'C09p51890' => 'bna', 'C09p74300' => 'bna', 'CAN.G179.26' => 'can', 'CAN.G3384.1' => 'can', 'CAN.G394.68' => 'can', 'CAN.G907.13' => 'can', 'CANSAT11G0012' => 'cansat', 'CANSAT25G1586' => 'cansat', 'CANSAT35G0735' => 'cansat', 'CANSAT54G0556' => 'cansat', 'CANSAT64G0356' => 'cansat', 'CANSAT78G2042' => 'cansat', 'CARHR125920' => 'chi', 'CARHR131910' => 'chi', 'CARHR172390' => 'chi', 'CARHR211140' => 'chi', 'CARHR285850' => 'chi', 'CARHR285860' => 'chi', 'Carub.0004s1347' => 'cru', 'Carub.0004s1960' => 'cru', 'Carub.0005s2880' => 'cru', 'Carub.0006s0107' => 'cru', 'Carub.0008s2015' => 'cru', 'Carub.0008s2016' => 'cru', 'Carub.0008s2017' => 'cru', 'Ca_01315_v3' => 'car', 'Ca_05063_v3' => 'car', 'Ca_10231_v3' => 'car', 'Ca_10913_v3' => 'car', 'Ca_19156_v3' => 'car', 'Ca_23644_v3' => 'car', 'Ca_26735_v3' => 'car', 'Cc01_g13130' => 'ccan', 'Cc02_g21690' => 'ccan', 'Cc03_g03600' => 'ccan', 'Cc06_g02510' => 'ccan', 'CDE02G1265' => 'cde', 'CDE05G0415' => 'cde', 'CDE08G1082' => 'cde', 'Cfa005780' => 'cfa', 'Cfa011522' => 'cfa', 'Cfa011523' => 'cfa', 'Cfa015627' => 'cfa', 'Cfa017359' => 'cfa', 'Ciclev10005687m.g' => 'ccl', 'Ciclev10012173m.g' => 'ccl', 'Ciclev10021621m.g' => 'ccl', 'Ciclev10028968m.g' => 'ccl', 'Ciclev10029907m.g' => 'ccl', 'CiPaw.01G164800' => 'cil', 'CiPaw.07G083700' => 'cil', 'CiPaw.07G127000' => 'cil', 'CiPaw.07G136900' => 'cil', 'CiPaw.08G081700' => 'cil', 'CiPaw.09G194600' => 'cil', 'CiPaw.10G146500' => 'cil', 'CiPaw.13G091500' => 'cil', 'CiPaw.13G091600' => 'cil', 'ClCG00G003390' => 'cla', 'ClCG01G007220' => 'cla', 'ClCG03G001370' => 'cla', 'ClCG04G008100' => 'cla', 'ClCG06G006110' => 'cla', 'ClCG06G006130' => 'cla', 'ClCG10G021210' => 'cla', 'COL.COLO4_07648' => 'col', 'COL.COLO4_07650' => 'col', 'COL.COLO4_07651' => 'col', 'COL.COLO4_14780' => 'col', 'COL.COLO4_18546' => 'col', 'COL.COLO4_18547' => 'col', 'COL.COLO4_23103' => 'col', 'COL.COLO4_30419' => 'col', 'COL.COLO4_34232' => 'col', 'Cpa.g.sc169.20' => 'cpa', 'Cpa.g.sc57.45' => 'cpa', 'Cpa.g.sc58.124' => 'cpa', 'Cpa.g.sc58.125' => 'cpa', 'Cpa.g.sc81.118' => 'cpa', 'Cpa.g.sc81.119' => 'cpa', 'Cre12.g524700' => 'cre', 'CsaV3_1G034430' => 'csa', 'CsaV3_1G034440' => 'csa', 'CsaV3_1G034450' => 'csa', 'CsaV3_3G034830' => 'csa', 'CsaV3_4G025090' => 'csa', 'CsaV3_5G018660' => 'csa', 'CsaV3_6G038160' => 'csa', 'CSS0003447' => 'camsi', 'CSS0017840' => 'camsi', 'CSS0019260' => 'camsi', 'CSS0040375' => 'camsi', 'CSS0042533' => 'camsi', 'DCAR_005960' => 'dca', 'DCAR_012104' => 'dca', 'DCAR_012105' => 'dca', 'DCAR_012293' => 'dca', 'DCAR_015632' => 'dca', 'DCAR_024602' => 'dca', 'DCAR_028752' => 'dca', 'Dinv06261' => 'din', 'Dinv13982' => 'din', 'Dinv17029' => 'din', 'Dinv18463' => 'din', 'Dinv33181' => 'din', 'Dinv35585' => 'din', 'Dinv37161' => 'din', 'Dinv42977' => 'din', 'Dinv43122' => 'din', 'Dinv44517' => 'din', 'Duzib093G0256' => 'dzi', 'Duzib106G1254' => 'dzi', 'Duzib128G1789' => 'dzi', 'Duzib133G0633' => 'dzi', 'Duzib138G0510' => 'dzi', 'Duzib150G1084' => 'dzi', 'Duzib168G0488' => 'dzi', 'Duzib168G1523' => 'dzi', 'Duzib170G0133' => 'dzi', 'ECA234G1433' => 'eca', 'ECA236G1432' => 'eca', 'ECA236G2256' => 'eca', 'ECA236G2365' => 'eca', 'ECA236G4830' => 'eca', 'ECA248G1505' => 'eca', 'EL10Ac3g06431' => 'bvu', 'EL10Ac5g12577' => 'bvu', 'EL10Ac6g13533' => 'bvu', 'EL10Ac7g16045' => 'bvu', 'Eucgr.A01281' => 'egr', 'Eucgr.B02326' => 'egr', 'Eucgr.H03532' => 'egr', 'Eucgr.K00553' => 'egr', 'Eucgr.K03116' => 'egr', 'FAN02G3963' => 'fan', 'FAN05G0438' => 'fan', 'FAN09G2434' => 'fan', 'FAN12G3984' => 'fan', 'FAN14G0798' => 'fan', 'FAN17G0652' => 'fan', 'FAN19G1988' => 'fan', 'FAN22G0632' => 'fan', 'FAN23G0387' => 'fan', 'FAN26G1323' => 'fan', 'FAN28G0666' => 'fan', 'FvH4_1g26080' => 'fve', 'FvH4_3g36780' => 'fve', 'FvH4_4g15270' => 'fve', 'FvH4_6g13490' => 'fve', 'Glyma.01G098700' => 'gma', 'Glyma.03G065900' => 'gma', 'Glyma.03G073754' => 'gma', 'Glyma.03G073758' => 'gma', 'Glyma.03G083200' => 'gma', 'Glyma.03G225500' => 'gma', 'Glyma.05G037766' => 'gma', 'Glyma.07G133500' => 'gma', 'Glyma.10G139400' => 'gma', 'Glyma.10G248900' => 'gma', 'Glyma.11G137800' => 'gma', 'Glyma.12G061300' => 'gma', 'Glyma.13G337900' => 'gma', 'Glyma.15G036600' => 'gma', 'Glyma.18G182800' => 'gma', 'Glyma.19G222500' => 'gma', 'Glyma.20G144800' => 'gma', 'Gohir.A01G222000' => 'ghi', 'Gohir.A03G044000' => 'ghi', 'Gohir.A03G044100' => 'ghi', 'Gohir.A04G083100' => 'ghi', 'Gohir.A07G127200' => 'ghi', 'Gohir.A07G132400' => 'ghi', 'Gohir.A08G000700' => 'ghi', 'Gohir.A11G327300' => 'ghi', 'Gohir.D01G211500' => 'ghi', 'Gohir.D03G123400' => 'ghi', 'Gohir.D03G123500' => 'ghi', 'Gohir.D04G121800' => 'ghi', 'Gohir.D07G131500' => 'ghi', 'Gohir.D07G136600' => 'ghi', 'Gohir.D08G011600' => 'ghi', 'Gohir.D11G346200' => 'ghi', 'Gorai.001G142800' => 'gra', 'Gorai.001G148700' => 'gra', 'Gorai.002G257300' => 'gra', 'Gorai.003G130000' => 'gra', 'Gorai.003G130100' => 'gra', 'Gorai.004G005300' => 'gra', 'Gorai.007G376500' => 'gra', 'Gorai.012G104700' => 'gra', 'GSVIVG01017946001' => 'vvi', 'GSVIVG01024928001' => 'vvi', 'GSVIVG01028227001' => 'vvi', 'GSVIVG01034151001' => 'vvi', 'HanXRQChr05g0135031' => 'han', 'HanXRQChr05g0135041' => 'han', 'HanXRQChr05g0140021' => 'han', 'HanXRQChr06g0178981' => 'han', 'HanXRQChr07g0188251' => 'han', 'HanXRQChr08g0235311' => 'han', 'HanXRQChr09g0271011' => 'han', 'HanXRQChr10g0293321' => 'han', 'HanXRQChr13g0388171' => 'han', 'Haze_00916' => 'cav', 'Haze_05063' => 'cav', 'Haze_20814' => 'cav', 'Haze_24128' => 'cav', 'Hma1.2p1_0745F.1_g212010' => 'hma', 'Hma1.2p1_0757F.1_g213260' => 'hma', 'Hma1.2p1_0936F.1_g238840' => 'hma', 'Hma1.2p1_1735F.1_g299890' => 'hma', 'Hma1.2p1_1861F.1_g305685' => 'hma', 'HPP92_003397' => 'vpl', 'HPP92_012597' => 'vpl', 'HPP92_015520' => 'vpl', 'HPP92_015539' => 'vpl', 'HPP92_020373' => 'vpl', 'Hund04938' => 'sun', 'Hund10677' => 'sun', 'Hund11033' => 'sun', 'Hund12155' => 'sun', 'Lalb_Chr01g0022551' => 'lal', 'Lalb_Chr03g0042341' => 'lal', 'Lalb_Chr07g0192931' => 'lal', 'Lalb_Chr12g0209551' => 'lal', 'Lalb_Chr19g0125251' => 'lal', 'Lalb_Chr19g0137891' => 'lal', 'Lalb_Chr21g0304641' => 'lal', 'Lalb_Chr21g0309881' => 'lal', 'Lj1A5T12' => 'lonja', 'Lj1C148G10' => 'lonja', 'Lj2A93T83' => 'lonja', 'Lj3A738G68' => 'lonja', 'Lj3C966T1' => 'lonja', 'Lj3g0018958' => 'lja', 'Lj3g0021831' => 'lja', 'Lj3g0025443' => 'lja', 'Lj4g0026809' => 'lja', 'Lj5g0012558' => 'lja', 'Lj5g0021586' => 'lja', 'Lsat_1_v5_gn_5_156840' => 'lsa', 'Lsat_1_v5_gn_8_73460' => 'lsa', 'Lsat_1_v5_gn_8_73481' => 'lsa', 'Lsat_1_v5_gn_9_31601' => 'lsa', 'Lsat_1_v5_gn_9_77320' => 'lsa', 'Manes.01G171300' => 'mes', 'Manes.01G171400' => 'mes', 'Manes.01G236100' => 'mes', 'Manes.02G130500' => 'mes', 'Manes.02G130600' => 'mes', 'Manes.03G180200' => 'mes', 'Manes.05G007000' => 'mes', 'Manes.08G084400' => 'mes', 'Manes.09G092600' => 'mes', 'Manes.15G027900' => 'mes', 'MBI04_g40948_MAGBIO' => 'mbi', 'MBI14_g12123_MAGBIO' => 'mbi', 'MBI18_g28915_MAGBIO' => 'mbi', 'MCO09G053' => 'mco', 'MCO11G782' => 'mco', 'MCO15G215' => 'mco', 'MD03G1088500' => 'mdo', 'MD03G1088600' => 'mdo', 'MD04G1130800' => 'mdo', 'MD09G1291700' => 'mdo', 'MD11G1097500' => 'mdo', 'MD11G1097600' => 'mdo', 'MD12G1143900' => 'mdo', 'MD13G1191400' => 'mdo', 'MD16G1191500' => 'mdo', 'Medtr1g085570' => 'mtr', 'Medtr1g104610' => 'mtr', 'Medtr2g097520' => 'mtr', 'Medtr4g021800' => 'mtr', 'Medtr4g021825' => 'mtr', 'Medtr4g064270' => 'mtr', 'Medtr4g064380' => 'mtr', 'Medtr7g062150' => 'mtr', 'MELO3C003138.2' => 'cme', 'MELO3C005187.2' => 'cme', 'MELO3C009252.2' => 'cme', 'MELO3C014481.2' => 'cme', 'MELO3C020616.2' => 'cme', 'MELO3C020617.2' => 'cme', 'MELO3C020618.2' => 'cme', 'Migut.G00328' => 'egut', 'Migut.J00320' => 'egut', 'Migut.L01000' => 'egut', 'Migut.L01953' => 'egut', 'MSTRG.10253' => 'ama', 'MSTRG.19077' => 'ama', 'MSTRG.26780' => 'ama', 'MSTRG.4023' => 'ama', 'MSTRG.5655' => 'ama', 'MSTRG.9992' => 'ama', 'Nitab4.5_0000043g0310' => 'nta', 'Nitab4.5_0000463g0080' => 'nta', 'Nitab4.5_0000705g0170' => 'nta', 'Nitab4.5_0001326g0060' => 'nta', 'Nitab4.5_0001628g0030' => 'nta', 'Nitab4.5_0002103g0110' => 'nta', 'Nitab4.5_0002946g0030' => 'nta', 'Nitab4.5_0004639g0030' => 'nta', 'Nn2g11149' => 'nnu', 'Nn2g13389' => 'nnu', 'Nn4g25326' => 'nnu', 'Nn4g26290' => 'nnu', 'Nn5g29865' => 'nnu', 'Oeu004163.1' => 'oeu', 'Oeu006901.1' => 'oeu', 'Oeu010096.1' => 'oeu', 'Oeu024340.1' => 'oeu', 'Oeu048369.1' => 'oeu', 'Os01g0973000' => 'osa', 'Os03g0273800' => 'osa', 'Os03g0701200' => 'osa', 'Os03g0834050' => 'osa', 'Os07g0634400' => 'osa', 'Peaxi162Scf00092g01414' => 'pax', 'Peaxi162Scf00165g00818' => 'pax', 'Peaxi162Scf00309g00516' => 'pax', 'Peaxi162Scf00774g00218' => 'pax', 'PGR004G1824' => 'pgr', 'PGR004G2606' => 'pgr', 'PGR031G2716' => 'pgr', 'PGR102G2460' => 'pgr', 'PGR142G2599' => 'pgr', 'PGSC0003DMG400000843' => 'stu', 'PGSC0003DMG400008829' => 'stu', 'PGSC0003DMG400030418' => 'stu', 'PGSC0003DMG400031834' => 'stu', 'PGSC0003DMG401028300' => 'stu', 'PGSC0003DMG402028300' => 'stu', 'Phvul.001G219300' => 'pvu', 'Phvul.007G056000' => 'pvu', 'Phvul.007G208000' => 'pvu', 'Phvul.008G119500' => 'pvu', 'Phvul.010G011200' => 'pvu', 'Phvul.010G014800' => 'pvu', 'Phvul.011G062900' => 'pvu', 'Phvul.L007043' => 'pvu', 'Potri.001G242300' => 'ptr', 'Potri.002G185300' => 'ptr', 'Potri.006G086900' => 'ptr', 'Potri.008G151700' => 'ptr', 'Potri.009G033500' => 'ptr', 'Potri.010G089300' => 'ptr', 'Potri.014G110800' => 'ptr', 'Pp3c27_8130' => 'ppa', 'Pp3c6_27410' => 'ppa', 'PRCOL_00001659' => 'pco', 'PRCOL_00001927' => 'pco', 'PRCOL_00003649' => 'pco', 'Prupe.1G011600' => 'ppe', 'Prupe.3G000800' => 'ppe', 'Prupe.3G001100' => 'ppe', 'Prupe.6G072700' => 'ppe', 'Prupe.6G072800' => 'ppe', 'Prupe.6G257300' => 'ppe', 'Prupe.8G033000' => 'ppe', 'Psat0s2633g0080' => 'psa', 'Psat0s3396g0080' => 'psa', 'Psat0s3396g0200' => 'psa', 'Psat3g139080' => 'psa', 'Psat5g285080' => 'psa', 'Psat6g157760' => 'psa', 'Psat6g208440' => 'psa', 'Psat7g215320' => 'psa', 'Psat7g215400' => 'psa', 'Psat7g235600' => 'psa', 'Psat7g235760' => 'psa', 'PSO063G4603' => 'pso', 'PSO210G0182' => 'pso', 'PSO210G0196' => 'pso', 'PSO339G0394' => 'pso', 'PSO339G4127' => 'pso', 'PSO513G0064' => 'pso', 'PSO761G0079' => 'pso', 'QL01p031003' => 'qlo', 'QL01p031078' => 'qlo', 'QL06p003004' => 'qlo', 'QL07p048731' => 'qlo', 'QL09p037427' => 'qlo', 'RcHm_v2.0_Chr3g0466361' => 'rch', 'RcHm_v2.0_Chr3g0485571' => 'rch', 'RcHm_v2.0_Chr4g0416551' => 'rch', 'RcHm_v2.0_Chr5g0065831' => 'rch', 'Rhsim01G0230500' => 'rsi', 'Rhsim05G0194000' => 'rsi', 'Rhsim08G0250400' => 'rsi', 'Sabra02G0131000' => 'sbr', 'Sabra06G0066300' => 'sbr', 'Sabra08G0115500' => 'sbr', 'Sabra09G0023900' => 'sbr', 'Sabra10G0054000' => 'sbr', 'Sabra14G0081500' => 'sbr', 'Sabra16G0147100' => 'sbr', 'SalBow2G2957' => 'sbo', 'SalBow4G3320' => 'sbo', 'SalBow8G1894' => 'sbo', 'Sc07g0007950' => 'sci', 'Sc12g0001360' => 'sci', 'Sc13g0004330' => 'sci', 'Sc20g0005010' => 'sci', 'Sed0000361' => 'sed', 'Sed0001706' => 'sed', 'Sed0002422' => 'sed', 'Sed0004029' => 'sed', 'Sed0004602' => 'sed', 'Sed0004943' => 'sed', 'Sed0008646' => 'sed', 'Sed0023313' => 'sed', 'Sed0024843' => 'sed', 'SEGI_00081' => 'sgi', 'SEGI_00947' => 'sgi', 'SEGI_04046' => 'sgi', 'SEGI_06880' => 'sgi', 'SEGI_09736' => 'sgi', 'SEGI_12741' => 'sgi', 'SEGI_14530' => 'sgi', 'SEGI_20705' => 'sgi', 'SEGI_26088' => 'sgi', 'SEGI_28323' => 'sgi', 'SEGI_33343' => 'sgi', 'SGA_v2.0_scaffold126G33775' => 'sas', 'SGA_v2.0_scaffold2G01337' => 'sas', 'SGA_v2.0_scaffold38G15006' => 'sas', 'SGA_v2.0_scaffold39G15264' => 'sas', 'SGA_v2.0_scaffold453G51880' => 'sas', 'SHI12696' => 'shi', 'SMO367G1096' => 'smo', 'Solyc01g068630.3' => 'sly', 'Solyc05g011880.3' => 'sly', 'Solyc06g076300.3' => 'sly', 'Solyc09g010940.4' => 'sly', 'Solyc09g075890.3' => 'sly', 'Sopen01g030560' => 'spe', 'Sopen05g006630' => 'spe', 'Sopen06g032720' => 'spe', 'Sopen09g005660' => 'spe', 'Sopen09g030690' => 'spe', 'Sp4g14540' => 'spa', 'Sp4g20030' => 'spa', 'Sp5g01320' => 'spa', 'Sp6g21170' => 'spa', 'Sp6g21180' => 'spa', 'Sp6g21190' => 'spa', 'Sp6g40220' => 'spa', 'TAR362G0122' => 'tar', 'TAR362G1338' => 'tar', 'TAR369G0590' => 'tar', 'TAR371G0824' => 'tar', 'TAR622G1429' => 'tar', 'TAR623G0734' => 'tar', 'TAR625G0441' => 'tar', 'TAR629G0976' => 'tar', 'TAR633G1195' => 'tar', 'TAR636G2660' => 'tar', 'THA.LOC104799440' => 'tha', 'THA.LOC104800966' => 'tha', 'THA.LOC104806559' => 'tha', 'THA.LOC104810765' => 'tha', 'THA.LOC104816266' => 'tha', 'THA.LOC104817419' => 'tha', 'THA.LOC104827021' => 'tha', 'Thecc.01G327400' => 'tca', 'Thecc.04G229200' => 'tca', 'Thecc.05G037400' => 'tca', 'Thecc.09G318600' => 'tca', 'Thecc.09G318700' => 'tca', 'Thhalv10006238m.g' => 'esa', 'Thhalv10014321m.g' => 'esa', 'Thhalv10014335m.g' => 'esa', 'Thhalv10015826m.g' => 'esa', 'Thhalv10017107m.g' => 'esa', 'Thhalv10017180m.g' => 'esa', 'Thhalv10029339m.g' => 'esa', 'TPR.G1699' => 'tpr', 'TPR.G23609' => 'tpr', 'TPR.G3081' => 'tpr', 'TPR.G40397' => 'tpr', 'TPR.G5522' => 'tpr', 'TPR.G5618' => 'tpr', 'TPR.G5626' => 'tpr', 'TWI09G1632' => 'twi', 'TWI23G1230' => 'twi', 'TWI53G1064' => 'twi', 'TWI59G0751' => 'twi', 'TWI74G0947' => 'twi', 'TWI77G0337' => 'twi', 'TWI79G1254' => 'twi', 'unitig_0.g2341' => 'ugi', 'unitig_26.g10006' => 'ugi', 'unitig_26.g10008' => 'ugi', 'unitig_26.g9192' => 'ugi', 'vmacro14547' => 'vma', 'vmacro15333' => 'vma', 'vmacro18743' => 'vma', 'vmacro20166' => 'vma', 'VMungo0331G0523' => 'vmu', 'VMungo0331G1202' => 'vmu', 'VMungo0720G1228' => 'vmu', 'VMungo0720G1514' => 'vmu', 'VMungo1080G0169' => 'vmu', 'VMungo1127G1475' => 'vmu', 'VMungo1383G1208' => 'vmu', 'VMungo1383G1698' => 'vmu', 'Zm00001eb012270' => 'zma', 'Zm00001eb054100' => 'zma', 'Zm00001eb063350' => 'zma', 'Zm00001eb328560' => 'zma', 'Zm00001eb342820' => 'zma', 'Zm00001eb362210' => 'zma', 'Zm00001eb397730' => 'zma', 'Zm00001eb399750' => 'zma' ) $gf_id = 'HOM05D000959' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000959' ) $data_identifier = 'HOM05D000959' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 5, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 5, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 10, 'mbi' => (int) 3, 'mco' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 2, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 3, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 11, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399750' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000959', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '622', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p07100' => 'bna', 'A03p11720' => 'bna', 'A05p08300' => 'bna', 'A05p13380' => 'bna', 'A09p54130' => 'bna', 'A10p16690' => 'bna', 'A10p16700' => 'bna', 'A10p33390' => 'bna', 'Aa31LG10G16020' => 'aar', 'Aa31LG1G11810' => 'aar', 'Aa31LG1G11830' => 'aar', 'Aa31LG1G22510' => 'aar', 'Aa31LG5G4890' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5793' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2310' => 'aag', 'Actinidia08499' => 'ach', 'Actinidia11262' => 'ach', 'Actinidia23926' => 'ach', 'Actinidia34420' => 'ach', 'Actinidia36970' => 'ach', 'Ah.02g111220' => 'amhyb', 'Ah.15g097750' => 'amhyb', 'AL4G27500' => 'aly', 'AL6G11470' => 'aly', 'AL8G35950' => 'aly', 'AL8G35960' => 'aly', 'AL8G35970' => 'aly', 'Aqoxy1G00912' => 'aox', 'Aqoxy2G02253' => 'aox', 'Aqoxy2G02411' => 'aox', 'Aqoxy5G00485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BZ66YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K8ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM4FUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6BF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HFV7XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25JBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0YNNV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MAKK6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P70IT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP2Z6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V61LZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YWP64R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3S9AI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7PGHH' => 'arhy', 'AT2G32150' => 'ath', 'AT3G62040' => 'ath', 'AT5G02230' => 'ath', 'AT5G59480' => 'ath', 'AT5G59490' => 'ath', 'ATR0332G060' => 'atr', 'ATR0559G190' => 'atr', 'ATR0693G294' => 'atr', 'Atru.chr3.3975' => 'acertr', 'Atru.chr3.3976' => 'acertr', 'Atru.chr3.3977' => 'acertr', 'Atru.chr4.2498' => 'acertr', 'Atru.chr5.838' => 'acertr', 'Atru.chr8.1990' => 'acertr', 'Atru.chr8.1991' => 'acertr', 'Atru.chr8.1992' => 'acertr', 'AUR62001759' => 'cqu', 'AUR62009545' => 'cqu', 'AUR62010474' => 'cqu', 'AUR62025820' => 'cqu', 'AUR62030422' => 'cqu', 'AUR62033605' => 'cqu', 'AUR62038615' => 'cqu', 'AUR62041347' => 'cqu', 'BcaB01g04574' => 'bca', 'BcaB02g09263' => 'bca', 'BcaB02g10453' => 'bca', 'BcaB05g22513' => 'bca', 'BcaB08g36253' => 'bca', 'BcaB08g36254' => 'bca', 'BcaC01g06519' => 'bca', 'BcaC02g11889' => 'bca', 'BcaC03g14010' => 'bca', 'BcaC03g18439' => 'bca', 'BcaC04g19765' => 'bca', 'BcaC09g48432' => 'bca', 'BcaNung07302' => 'bca', 'BolC2t06040H' => 'bol', 'BolC2t07346H' => 'bol', 'BolC3t13817H' => 'bol', 'BolC4t22625H' => 'bol', 'BolC4t23297H' => 'bol', 'BolC8t51278H' => 'bol', 'BolC9t58050H' => 'bol', 'BolC9t58051H' => 'bol', 'BolC9t60163H' => 'bol', 'BraA02t04712Z' => 'bra', 'BraA02t05791Z' => 'bra', 'BraA03t10483Z' => 'bra', 'BraA05t19795Z' => 'bra', 'BraA05t20276Z' => 'bra', 'BraA09t40827Z' => 'bra', 'BraA10t43750Z' => 'bra', 'BraA10t43751Z' => 'bra', 'BraA10t45370Z' => 'bra', 'C02p00400' => 'bna', 'C02p12460' => 'bna', 'C03p13680' => 'bna', 'C04p10270' => 'bna', 'C04p17500' => 'bna', 'C08p37010' => 'bna', 'C09p51880' => 'bna', 'C09p51890' => 'bna', 'C09p74300' => 'bna', 'CAN.G179.26' => 'can', 'CAN.G3384.1' => 'can', 'CAN.G394.68' => 'can', 'CAN.G907.13' => 'can', 'CANSAT11G0012' => 'cansat', 'CANSAT25G1586' => 'cansat', 'CANSAT35G0735' => 'cansat', 'CANSAT54G0556' => 'cansat', 'CANSAT64G0356' => 'cansat', 'CANSAT78G2042' => 'cansat', 'CARHR125920' => 'chi', 'CARHR131910' => 'chi', 'CARHR172390' => 'chi', 'CARHR211140' => 'chi', 'CARHR285850' => 'chi', 'CARHR285860' => 'chi', 'Carub.0004s1347' => 'cru', 'Carub.0004s1960' => 'cru', 'Carub.0005s2880' => 'cru', 'Carub.0006s0107' => 'cru', 'Carub.0008s2015' => 'cru', 'Carub.0008s2016' => 'cru', 'Carub.0008s2017' => 'cru', 'Ca_01315_v3' => 'car', 'Ca_05063_v3' => 'car', 'Ca_10231_v3' => 'car', 'Ca_10913_v3' => 'car', 'Ca_19156_v3' => 'car', 'Ca_23644_v3' => 'car', 'Ca_26735_v3' => 'car', 'Cc01_g13130' => 'ccan', 'Cc02_g21690' => 'ccan', 'Cc03_g03600' => 'ccan', 'Cc06_g02510' => 'ccan', 'CDE02G1265' => 'cde', 'CDE05G0415' => 'cde', 'CDE08G1082' => 'cde', 'Cfa005780' => 'cfa', 'Cfa011522' => 'cfa', 'Cfa011523' => 'cfa', 'Cfa015627' => 'cfa', 'Cfa017359' => 'cfa', 'Ciclev10005687m.g' => 'ccl', 'Ciclev10012173m.g' => 'ccl', 'Ciclev10021621m.g' => 'ccl', 'Ciclev10028968m.g' => 'ccl', 'Ciclev10029907m.g' => 'ccl', 'CiPaw.01G164800' => 'cil', 'CiPaw.07G083700' => 'cil', 'CiPaw.07G127000' => 'cil', 'CiPaw.07G136900' => 'cil', 'CiPaw.08G081700' => 'cil', 'CiPaw.09G194600' => 'cil', 'CiPaw.10G146500' => 'cil', 'CiPaw.13G091500' => 'cil', 'CiPaw.13G091600' => 'cil', 'ClCG00G003390' => 'cla', 'ClCG01G007220' => 'cla', 'ClCG03G001370' => 'cla', 'ClCG04G008100' => 'cla', 'ClCG06G006110' => 'cla', 'ClCG06G006130' => 'cla', 'ClCG10G021210' => 'cla', 'COL.COLO4_07648' => 'col', 'COL.COLO4_07650' => 'col', 'COL.COLO4_07651' => 'col', 'COL.COLO4_14780' => 'col', 'COL.COLO4_18546' => 'col', 'COL.COLO4_18547' => 'col', 'COL.COLO4_23103' => 'col', 'COL.COLO4_30419' => 'col', 'COL.COLO4_34232' => 'col', 'Cpa.g.sc169.20' => 'cpa', 'Cpa.g.sc57.45' => 'cpa', 'Cpa.g.sc58.124' => 'cpa', 'Cpa.g.sc58.125' => 'cpa', 'Cpa.g.sc81.118' => 'cpa', 'Cpa.g.sc81.119' => 'cpa', 'Cre12.g524700' => 'cre', 'CsaV3_1G034430' => 'csa', 'CsaV3_1G034440' => 'csa', 'CsaV3_1G034450' => 'csa', 'CsaV3_3G034830' => 'csa', 'CsaV3_4G025090' => 'csa', 'CsaV3_5G018660' => 'csa', 'CsaV3_6G038160' => 'csa', 'CSS0003447' => 'camsi', 'CSS0017840' => 'camsi', 'CSS0019260' => 'camsi', 'CSS0040375' => 'camsi', 'CSS0042533' => 'camsi', 'DCAR_005960' => 'dca', 'DCAR_012104' => 'dca', 'DCAR_012105' => 'dca', 'DCAR_012293' => 'dca', 'DCAR_015632' => 'dca', 'DCAR_024602' => 'dca', 'DCAR_028752' => 'dca', 'Dinv06261' => 'din', 'Dinv13982' => 'din', 'Dinv17029' => 'din', 'Dinv18463' => 'din', 'Dinv33181' => 'din', 'Dinv35585' => 'din', 'Dinv37161' => 'din', 'Dinv42977' => 'din', 'Dinv43122' => 'din', 'Dinv44517' => 'din', 'Duzib093G0256' => 'dzi', 'Duzib106G1254' => 'dzi', 'Duzib128G1789' => 'dzi', 'Duzib133G0633' => 'dzi', 'Duzib138G0510' => 'dzi', 'Duzib150G1084' => 'dzi', 'Duzib168G0488' => 'dzi', 'Duzib168G1523' => 'dzi', 'Duzib170G0133' => 'dzi', 'ECA234G1433' => 'eca', 'ECA236G1432' => 'eca', 'ECA236G2256' => 'eca', 'ECA236G2365' => 'eca', 'ECA236G4830' => 'eca', 'ECA248G1505' => 'eca', 'EL10Ac3g06431' => 'bvu', 'EL10Ac5g12577' => 'bvu', 'EL10Ac6g13533' => 'bvu', 'EL10Ac7g16045' => 'bvu', 'Eucgr.A01281' => 'egr', 'Eucgr.B02326' => 'egr', 'Eucgr.H03532' => 'egr', 'Eucgr.K00553' => 'egr', 'Eucgr.K03116' => 'egr', 'FAN02G3963' => 'fan', 'FAN05G0438' => 'fan', 'FAN09G2434' => 'fan', 'FAN12G3984' => 'fan', 'FAN14G0798' => 'fan', 'FAN17G0652' => 'fan', 'FAN19G1988' => 'fan', 'FAN22G0632' => 'fan', 'FAN23G0387' => 'fan', 'FAN26G1323' => 'fan', 'FAN28G0666' => 'fan', 'FvH4_1g26080' => 'fve', 'FvH4_3g36780' => 'fve', 'FvH4_4g15270' => 'fve', 'FvH4_6g13490' => 'fve', 'Glyma.01G098700' => 'gma', 'Glyma.03G065900' => 'gma', 'Glyma.03G073754' => 'gma', 'Glyma.03G073758' => 'gma', 'Glyma.03G083200' => 'gma', 'Glyma.03G225500' => 'gma', 'Glyma.05G037766' => 'gma', 'Glyma.07G133500' => 'gma', 'Glyma.10G139400' => 'gma', 'Glyma.10G248900' => 'gma', 'Glyma.11G137800' => 'gma', 'Glyma.12G061300' => 'gma', 'Glyma.13G337900' => 'gma', 'Glyma.15G036600' => 'gma', 'Glyma.18G182800' => 'gma', 'Glyma.19G222500' => 'gma', 'Glyma.20G144800' => 'gma', 'Gohir.A01G222000' => 'ghi', 'Gohir.A03G044000' => 'ghi', 'Gohir.A03G044100' => 'ghi', 'Gohir.A04G083100' => 'ghi', 'Gohir.A07G127200' => 'ghi', 'Gohir.A07G132400' => 'ghi', 'Gohir.A08G000700' => 'ghi', 'Gohir.A11G327300' => 'ghi', 'Gohir.D01G211500' => 'ghi', 'Gohir.D03G123400' => 'ghi', 'Gohir.D03G123500' => 'ghi', 'Gohir.D04G121800' => 'ghi', 'Gohir.D07G131500' => 'ghi', 'Gohir.D07G136600' => 'ghi', 'Gohir.D08G011600' => 'ghi', 'Gohir.D11G346200' => 'ghi', 'Gorai.001G142800' => 'gra', 'Gorai.001G148700' => 'gra', 'Gorai.002G257300' => 'gra', 'Gorai.003G130000' => 'gra', 'Gorai.003G130100' => 'gra', 'Gorai.004G005300' => 'gra', 'Gorai.007G376500' => 'gra', 'Gorai.012G104700' => 'gra', 'GSVIVG01017946001' => 'vvi', 'GSVIVG01024928001' => 'vvi', 'GSVIVG01028227001' => 'vvi', 'GSVIVG01034151001' => 'vvi', 'HanXRQChr05g0135031' => 'han', 'HanXRQChr05g0135041' => 'han', 'HanXRQChr05g0140021' => 'han', 'HanXRQChr06g0178981' => 'han', 'HanXRQChr07g0188251' => 'han', 'HanXRQChr08g0235311' => 'han', 'HanXRQChr09g0271011' => 'han', 'HanXRQChr10g0293321' => 'han', 'HanXRQChr13g0388171' => 'han', 'Haze_00916' => 'cav', 'Haze_05063' => 'cav', 'Haze_20814' => 'cav', 'Haze_24128' => 'cav', 'Hma1.2p1_0745F.1_g212010' => 'hma', 'Hma1.2p1_0757F.1_g213260' => 'hma', 'Hma1.2p1_0936F.1_g238840' => 'hma', 'Hma1.2p1_1735F.1_g299890' => 'hma', 'Hma1.2p1_1861F.1_g305685' => 'hma', 'HPP92_003397' => 'vpl', 'HPP92_012597' => 'vpl', 'HPP92_015520' => 'vpl', 'HPP92_015539' => 'vpl', 'HPP92_020373' => 'vpl', 'Hund04938' => 'sun', 'Hund10677' => 'sun', 'Hund11033' => 'sun', 'Hund12155' => 'sun', 'Lalb_Chr01g0022551' => 'lal', 'Lalb_Chr03g0042341' => 'lal', 'Lalb_Chr07g0192931' => 'lal', 'Lalb_Chr12g0209551' => 'lal', 'Lalb_Chr19g0125251' => 'lal', 'Lalb_Chr19g0137891' => 'lal', 'Lalb_Chr21g0304641' => 'lal', 'Lalb_Chr21g0309881' => 'lal', 'Lj1A5T12' => 'lonja', 'Lj1C148G10' => 'lonja', 'Lj2A93T83' => 'lonja', 'Lj3A738G68' => 'lonja', 'Lj3C966T1' => 'lonja', 'Lj3g0018958' => 'lja', 'Lj3g0021831' => 'lja', 'Lj3g0025443' => 'lja', 'Lj4g0026809' => 'lja', 'Lj5g0012558' => 'lja', 'Lj5g0021586' => 'lja', 'Lsat_1_v5_gn_5_156840' => 'lsa', 'Lsat_1_v5_gn_8_73460' => 'lsa', 'Lsat_1_v5_gn_8_73481' => 'lsa', 'Lsat_1_v5_gn_9_31601' => 'lsa', 'Lsat_1_v5_gn_9_77320' => 'lsa', 'Manes.01G171300' => 'mes', 'Manes.01G171400' => 'mes', 'Manes.01G236100' => 'mes', 'Manes.02G130500' => 'mes', 'Manes.02G130600' => 'mes', 'Manes.03G180200' => 'mes', 'Manes.05G007000' => 'mes', 'Manes.08G084400' => 'mes', 'Manes.09G092600' => 'mes', 'Manes.15G027900' => 'mes', 'MBI04_g40948_MAGBIO' => 'mbi', 'MBI14_g12123_MAGBIO' => 'mbi', 'MBI18_g28915_MAGBIO' => 'mbi', 'MCO09G053' => 'mco', 'MCO11G782' => 'mco', 'MCO15G215' => 'mco', 'MD03G1088500' => 'mdo', 'MD03G1088600' => 'mdo', 'MD04G1130800' => 'mdo', 'MD09G1291700' => 'mdo', 'MD11G1097500' => 'mdo', 'MD11G1097600' => 'mdo', 'MD12G1143900' => 'mdo', 'MD13G1191400' => 'mdo', 'MD16G1191500' => 'mdo', 'Medtr1g085570' => 'mtr', 'Medtr1g104610' => 'mtr', 'Medtr2g097520' => 'mtr', 'Medtr4g021800' => 'mtr', 'Medtr4g021825' => 'mtr', 'Medtr4g064270' => 'mtr', 'Medtr4g064380' => 'mtr', 'Medtr7g062150' => 'mtr', 'MELO3C003138.2' => 'cme', 'MELO3C005187.2' => 'cme', 'MELO3C009252.2' => 'cme', 'MELO3C014481.2' => 'cme', 'MELO3C020616.2' => 'cme', 'MELO3C020617.2' => 'cme', 'MELO3C020618.2' => 'cme', 'Migut.G00328' => 'egut', 'Migut.J00320' => 'egut', 'Migut.L01000' => 'egut', 'Migut.L01953' => 'egut', 'MSTRG.10253' => 'ama', 'MSTRG.19077' => 'ama', 'MSTRG.26780' => 'ama', 'MSTRG.4023' => 'ama', 'MSTRG.5655' => 'ama', 'MSTRG.9992' => 'ama', 'Nitab4.5_0000043g0310' => 'nta', 'Nitab4.5_0000463g0080' => 'nta', 'Nitab4.5_0000705g0170' => 'nta', 'Nitab4.5_0001326g0060' => 'nta', 'Nitab4.5_0001628g0030' => 'nta', 'Nitab4.5_0002103g0110' => 'nta', 'Nitab4.5_0002946g0030' => 'nta', 'Nitab4.5_0004639g0030' => 'nta', 'Nn2g11149' => 'nnu', 'Nn2g13389' => 'nnu', 'Nn4g25326' => 'nnu', 'Nn4g26290' => 'nnu', 'Nn5g29865' => 'nnu', 'Oeu004163.1' => 'oeu', 'Oeu006901.1' => 'oeu', 'Oeu010096.1' => 'oeu', 'Oeu024340.1' => 'oeu', 'Oeu048369.1' => 'oeu', 'Os01g0973000' => 'osa', 'Os03g0273800' => 'osa', 'Os03g0701200' => 'osa', 'Os03g0834050' => 'osa', 'Os07g0634400' => 'osa', 'Peaxi162Scf00092g01414' => 'pax', 'Peaxi162Scf00165g00818' => 'pax', 'Peaxi162Scf00309g00516' => 'pax', 'Peaxi162Scf00774g00218' => 'pax', 'PGR004G1824' => 'pgr', 'PGR004G2606' => 'pgr', 'PGR031G2716' => 'pgr', 'PGR102G2460' => 'pgr', 'PGR142G2599' => 'pgr', 'PGSC0003DMG400000843' => 'stu', 'PGSC0003DMG400008829' => 'stu', 'PGSC0003DMG400030418' => 'stu', 'PGSC0003DMG400031834' => 'stu', 'PGSC0003DMG401028300' => 'stu', 'PGSC0003DMG402028300' => 'stu', 'Phvul.001G219300' => 'pvu', 'Phvul.007G056000' => 'pvu', 'Phvul.007G208000' => 'pvu', 'Phvul.008G119500' => 'pvu', 'Phvul.010G011200' => 'pvu', 'Phvul.010G014800' => 'pvu', 'Phvul.011G062900' => 'pvu', 'Phvul.L007043' => 'pvu', 'Potri.001G242300' => 'ptr', 'Potri.002G185300' => 'ptr', 'Potri.006G086900' => 'ptr', 'Potri.008G151700' => 'ptr', 'Potri.009G033500' => 'ptr', 'Potri.010G089300' => 'ptr', 'Potri.014G110800' => 'ptr', 'Pp3c27_8130' => 'ppa', 'Pp3c6_27410' => 'ppa', 'PRCOL_00001659' => 'pco', 'PRCOL_00001927' => 'pco', 'PRCOL_00003649' => 'pco', 'Prupe.1G011600' => 'ppe', 'Prupe.3G000800' => 'ppe', 'Prupe.3G001100' => 'ppe', 'Prupe.6G072700' => 'ppe', 'Prupe.6G072800' => 'ppe', 'Prupe.6G257300' => 'ppe', 'Prupe.8G033000' => 'ppe', 'Psat0s2633g0080' => 'psa', 'Psat0s3396g0080' => 'psa', 'Psat0s3396g0200' => 'psa', 'Psat3g139080' => 'psa', 'Psat5g285080' => 'psa', 'Psat6g157760' => 'psa', 'Psat6g208440' => 'psa', 'Psat7g215320' => 'psa', 'Psat7g215400' => 'psa', 'Psat7g235600' => 'psa', 'Psat7g235760' => 'psa', 'PSO063G4603' => 'pso', 'PSO210G0182' => 'pso', 'PSO210G0196' => 'pso', 'PSO339G0394' => 'pso', 'PSO339G4127' => 'pso', 'PSO513G0064' => 'pso', 'PSO761G0079' => 'pso', 'QL01p031003' => 'qlo', 'QL01p031078' => 'qlo', 'QL06p003004' => 'qlo', 'QL07p048731' => 'qlo', 'QL09p037427' => 'qlo', 'RcHm_v2.0_Chr3g0466361' => 'rch', 'RcHm_v2.0_Chr3g0485571' => 'rch', 'RcHm_v2.0_Chr4g0416551' => 'rch', 'RcHm_v2.0_Chr5g0065831' => 'rch', 'Rhsim01G0230500' => 'rsi', 'Rhsim05G0194000' => 'rsi', 'Rhsim08G0250400' => 'rsi', 'Sabra02G0131000' => 'sbr', 'Sabra06G0066300' => 'sbr', 'Sabra08G0115500' => 'sbr', 'Sabra09G0023900' => 'sbr', 'Sabra10G0054000' => 'sbr', 'Sabra14G0081500' => 'sbr', 'Sabra16G0147100' => 'sbr', 'SalBow2G2957' => 'sbo', 'SalBow4G3320' => 'sbo', 'SalBow8G1894' => 'sbo', 'Sc07g0007950' => 'sci', 'Sc12g0001360' => 'sci', 'Sc13g0004330' => 'sci', 'Sc20g0005010' => 'sci', 'Sed0000361' => 'sed', 'Sed0001706' => 'sed', 'Sed0002422' => 'sed', 'Sed0004029' => 'sed', 'Sed0004602' => 'sed', 'Sed0004943' => 'sed', 'Sed0008646' => 'sed', 'Sed0023313' => 'sed', 'Sed0024843' => 'sed', 'SEGI_00081' => 'sgi', 'SEGI_00947' => 'sgi', 'SEGI_04046' => 'sgi', 'SEGI_06880' => 'sgi', 'SEGI_09736' => 'sgi', 'SEGI_12741' => 'sgi', 'SEGI_14530' => 'sgi', 'SEGI_20705' => 'sgi', 'SEGI_26088' => 'sgi', 'SEGI_28323' => 'sgi', 'SEGI_33343' => 'sgi', 'SGA_v2.0_scaffold126G33775' => 'sas', 'SGA_v2.0_scaffold2G01337' => 'sas', 'SGA_v2.0_scaffold38G15006' => 'sas', 'SGA_v2.0_scaffold39G15264' => 'sas', 'SGA_v2.0_scaffold453G51880' => 'sas', 'SHI12696' => 'shi', 'SMO367G1096' => 'smo', 'Solyc01g068630.3' => 'sly', 'Solyc05g011880.3' => 'sly', 'Solyc06g076300.3' => 'sly', 'Solyc09g010940.4' => 'sly', 'Solyc09g075890.3' => 'sly', 'Sopen01g030560' => 'spe', 'Sopen05g006630' => 'spe', 'Sopen06g032720' => 'spe', 'Sopen09g005660' => 'spe', 'Sopen09g030690' => 'spe', 'Sp4g14540' => 'spa', 'Sp4g20030' => 'spa', 'Sp5g01320' => 'spa', 'Sp6g21170' => 'spa', 'Sp6g21180' => 'spa', 'Sp6g21190' => 'spa', 'Sp6g40220' => 'spa', 'TAR362G0122' => 'tar', 'TAR362G1338' => 'tar', 'TAR369G0590' => 'tar', 'TAR371G0824' => 'tar', 'TAR622G1429' => 'tar', 'TAR623G0734' => 'tar', 'TAR625G0441' => 'tar', 'TAR629G0976' => 'tar', 'TAR633G1195' => 'tar', 'TAR636G2660' => 'tar', 'THA.LOC104799440' => 'tha', 'THA.LOC104800966' => 'tha', 'THA.LOC104806559' => 'tha', 'THA.LOC104810765' => 'tha', 'THA.LOC104816266' => 'tha', 'THA.LOC104817419' => 'tha', 'THA.LOC104827021' => 'tha', 'Thecc.01G327400' => 'tca', 'Thecc.04G229200' => 'tca', 'Thecc.05G037400' => 'tca', 'Thecc.09G318600' => 'tca', 'Thecc.09G318700' => 'tca', 'Thhalv10006238m.g' => 'esa', 'Thhalv10014321m.g' => 'esa', 'Thhalv10014335m.g' => 'esa', 'Thhalv10015826m.g' => 'esa', 'Thhalv10017107m.g' => 'esa', 'Thhalv10017180m.g' => 'esa', 'Thhalv10029339m.g' => 'esa', 'TPR.G1699' => 'tpr', 'TPR.G23609' => 'tpr', 'TPR.G3081' => 'tpr', 'TPR.G40397' => 'tpr', 'TPR.G5522' => 'tpr', 'TPR.G5618' => 'tpr', 'TPR.G5626' => 'tpr', 'TWI09G1632' => 'twi', 'TWI23G1230' => 'twi', 'TWI53G1064' => 'twi', 'TWI59G0751' => 'twi', 'TWI74G0947' => 'twi', 'TWI77G0337' => 'twi', 'TWI79G1254' => 'twi', 'unitig_0.g2341' => 'ugi', 'unitig_26.g10006' => 'ugi', 'unitig_26.g10008' => 'ugi', 'unitig_26.g9192' => 'ugi', 'vmacro14547' => 'vma', 'vmacro15333' => 'vma', 'vmacro18743' => 'vma', 'vmacro20166' => 'vma', 'VMungo0331G0523' => 'vmu', 'VMungo0331G1202' => 'vmu', 'VMungo0720G1228' => 'vmu', 'VMungo0720G1514' => 'vmu', 'VMungo1080G0169' => 'vmu', 'VMungo1127G1475' => 'vmu', 'VMungo1383G1208' => 'vmu', 'VMungo1383G1698' => 'vmu', 'Zm00001eb012270' => 'zma', 'Zm00001eb054100' => 'zma', 'Zm00001eb063350' => 'zma', 'Zm00001eb328560' => 'zma', 'Zm00001eb342820' => 'zma', 'Zm00001eb362210' => 'zma', 'Zm00001eb397730' => 'zma', 'Zm00001eb399750' => 'zma' ), 'gf_id' => 'HOM05D000959', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000959' ), 'data_identifier' => 'HOM05D000959', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000959', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '622', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p07100' => 'bna', 'A03p11720' => 'bna', 'A05p08300' => 'bna', 'A05p13380' => 'bna', 'A09p54130' => 'bna', 'A10p16690' => 'bna', 'A10p16700' => 'bna', 'A10p33390' => 'bna', 'Aa31LG10G16020' => 'aar', 'Aa31LG1G11810' => 'aar', 'Aa31LG1G11830' => 'aar', 'Aa31LG1G22510' => 'aar', 'Aa31LG5G4890' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5793' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2310' => 'aag', 'Actinidia08499' => 'ach', 'Actinidia11262' => 'ach', 'Actinidia23926' => 'ach', 'Actinidia34420' => 'ach', 'Actinidia36970' => 'ach', 'Ah.02g111220' => 'amhyb', 'Ah.15g097750' => 'amhyb', 'AL4G27500' => 'aly', 'AL6G11470' => 'aly', 'AL8G35950' => 'aly', 'AL8G35960' => 'aly', 'AL8G35970' => 'aly', 'Aqoxy1G00912' => 'aox', 'Aqoxy2G02253' => 'aox', 'Aqoxy2G02411' => 'aox', 'Aqoxy5G00485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BZ66YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K8ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM4FUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6BF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HFV7XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25JBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0YNNV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MAKK6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P70IT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP2Z6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V61LZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YWP64R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3S9AI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7PGHH' => 'arhy', 'AT2G32150' => 'ath', 'AT3G62040' => 'ath', 'AT5G02230' => 'ath', 'AT5G59480' => 'ath', 'AT5G59490' => 'ath', 'ATR0332G060' => 'atr', 'ATR0559G190' => 'atr', 'ATR0693G294' => 'atr', 'Atru.chr3.3975' => 'acertr', 'Atru.chr3.3976' => 'acertr', 'Atru.chr3.3977' => 'acertr', 'Atru.chr4.2498' => 'acertr', 'Atru.chr5.838' => 'acertr', 'Atru.chr8.1990' => 'acertr', 'Atru.chr8.1991' => 'acertr', 'Atru.chr8.1992' => 'acertr', 'AUR62001759' => 'cqu', 'AUR62009545' => 'cqu', 'AUR62010474' => 'cqu', 'AUR62025820' => 'cqu', 'AUR62030422' => 'cqu', 'AUR62033605' => 'cqu', 'AUR62038615' => 'cqu', 'AUR62041347' => 'cqu', 'BcaB01g04574' => 'bca', 'BcaB02g09263' => 'bca', 'BcaB02g10453' => 'bca', 'BcaB05g22513' => 'bca', 'BcaB08g36253' => 'bca', 'BcaB08g36254' => 'bca', 'BcaC01g06519' => 'bca', 'BcaC02g11889' => 'bca', 'BcaC03g14010' => 'bca', 'BcaC03g18439' => 'bca', 'BcaC04g19765' => 'bca', 'BcaC09g48432' => 'bca', 'BcaNung07302' => 'bca', 'BolC2t06040H' => 'bol', 'BolC2t07346H' => 'bol', 'BolC3t13817H' => 'bol', 'BolC4t22625H' => 'bol', 'BolC4t23297H' => 'bol', 'BolC8t51278H' => 'bol', 'BolC9t58050H' => 'bol', 'BolC9t58051H' => 'bol', 'BolC9t60163H' => 'bol', 'BraA02t04712Z' => 'bra', 'BraA02t05791Z' => 'bra', 'BraA03t10483Z' => 'bra', 'BraA05t19795Z' => 'bra', 'BraA05t20276Z' => 'bra', 'BraA09t40827Z' => 'bra', 'BraA10t43750Z' => 'bra', 'BraA10t43751Z' => 'bra', 'BraA10t45370Z' => 'bra', 'C02p00400' => 'bna', 'C02p12460' => 'bna', 'C03p13680' => 'bna', 'C04p10270' => 'bna', 'C04p17500' => 'bna', 'C08p37010' => 'bna', 'C09p51880' => 'bna', 'C09p51890' => 'bna', 'C09p74300' => 'bna', 'CAN.G179.26' => 'can', 'CAN.G3384.1' => 'can', 'CAN.G394.68' => 'can', 'CAN.G907.13' => 'can', 'CANSAT11G0012' => 'cansat', 'CANSAT25G1586' => 'cansat', 'CANSAT35G0735' => 'cansat', 'CANSAT54G0556' => 'cansat', 'CANSAT64G0356' => 'cansat', 'CANSAT78G2042' => 'cansat', 'CARHR125920' => 'chi', 'CARHR131910' => 'chi', 'CARHR172390' => 'chi', 'CARHR211140' => 'chi', 'CARHR285850' => 'chi', 'CARHR285860' => 'chi', 'Carub.0004s1347' => 'cru', 'Carub.0004s1960' => 'cru', 'Carub.0005s2880' => 'cru', 'Carub.0006s0107' => 'cru', 'Carub.0008s2015' => 'cru', 'Carub.0008s2016' => 'cru', 'Carub.0008s2017' => 'cru', 'Ca_01315_v3' => 'car', 'Ca_05063_v3' => 'car', 'Ca_10231_v3' => 'car', 'Ca_10913_v3' => 'car', 'Ca_19156_v3' => 'car', 'Ca_23644_v3' => 'car', 'Ca_26735_v3' => 'car', 'Cc01_g13130' => 'ccan', 'Cc02_g21690' => 'ccan', 'Cc03_g03600' => 'ccan', 'Cc06_g02510' => 'ccan', 'CDE02G1265' => 'cde', 'CDE05G0415' => 'cde', 'CDE08G1082' => 'cde', 'Cfa005780' => 'cfa', 'Cfa011522' => 'cfa', 'Cfa011523' => 'cfa', 'Cfa015627' => 'cfa', 'Cfa017359' => 'cfa', 'Ciclev10005687m.g' => 'ccl', 'Ciclev10012173m.g' => 'ccl', 'Ciclev10021621m.g' => 'ccl', 'Ciclev10028968m.g' => 'ccl', 'Ciclev10029907m.g' => 'ccl', 'CiPaw.01G164800' => 'cil', 'CiPaw.07G083700' => 'cil', 'CiPaw.07G127000' => 'cil', 'CiPaw.07G136900' => 'cil', 'CiPaw.08G081700' => 'cil', 'CiPaw.09G194600' => 'cil', 'CiPaw.10G146500' => 'cil', 'CiPaw.13G091500' => 'cil', 'CiPaw.13G091600' => 'cil', 'ClCG00G003390' => 'cla', 'ClCG01G007220' => 'cla', 'ClCG03G001370' => 'cla', 'ClCG04G008100' => 'cla', 'ClCG06G006110' => 'cla', 'ClCG06G006130' => 'cla', 'ClCG10G021210' => 'cla', 'COL.COLO4_07648' => 'col', 'COL.COLO4_07650' => 'col', 'COL.COLO4_07651' => 'col', 'COL.COLO4_14780' => 'col', 'COL.COLO4_18546' => 'col', 'COL.COLO4_18547' => 'col', 'COL.COLO4_23103' => 'col', 'COL.COLO4_30419' => 'col', 'COL.COLO4_34232' => 'col', 'Cpa.g.sc169.20' => 'cpa', 'Cpa.g.sc57.45' => 'cpa', 'Cpa.g.sc58.124' => 'cpa', 'Cpa.g.sc58.125' => 'cpa', 'Cpa.g.sc81.118' => 'cpa', 'Cpa.g.sc81.119' => 'cpa', 'Cre12.g524700' => 'cre', 'CsaV3_1G034430' => 'csa', 'CsaV3_1G034440' => 'csa', 'CsaV3_1G034450' => 'csa', 'CsaV3_3G034830' => 'csa', 'CsaV3_4G025090' => 'csa', 'CsaV3_5G018660' => 'csa', 'CsaV3_6G038160' => 'csa', 'CSS0003447' => 'camsi', 'CSS0017840' => 'camsi', 'CSS0019260' => 'camsi', 'CSS0040375' => 'camsi', 'CSS0042533' => 'camsi', 'DCAR_005960' => 'dca', 'DCAR_012104' => 'dca', 'DCAR_012105' => 'dca', 'DCAR_012293' => 'dca', 'DCAR_015632' => 'dca', 'DCAR_024602' => 'dca', 'DCAR_028752' => 'dca', 'Dinv06261' => 'din', 'Dinv13982' => 'din', 'Dinv17029' => 'din', 'Dinv18463' => 'din', 'Dinv33181' => 'din', 'Dinv35585' => 'din', 'Dinv37161' => 'din', 'Dinv42977' => 'din', 'Dinv43122' => 'din', 'Dinv44517' => 'din', 'Duzib093G0256' => 'dzi', 'Duzib106G1254' => 'dzi', 'Duzib128G1789' => 'dzi', 'Duzib133G0633' => 'dzi', 'Duzib138G0510' => 'dzi', 'Duzib150G1084' => 'dzi', 'Duzib168G0488' => 'dzi', 'Duzib168G1523' => 'dzi', 'Duzib170G0133' => 'dzi', 'ECA234G1433' => 'eca', 'ECA236G1432' => 'eca', 'ECA236G2256' => 'eca', 'ECA236G2365' => 'eca', 'ECA236G4830' => 'eca', 'ECA248G1505' => 'eca', 'EL10Ac3g06431' => 'bvu', 'EL10Ac5g12577' => 'bvu', 'EL10Ac6g13533' => 'bvu', 'EL10Ac7g16045' => 'bvu', 'Eucgr.A01281' => 'egr', 'Eucgr.B02326' => 'egr', 'Eucgr.H03532' => 'egr', 'Eucgr.K00553' => 'egr', 'Eucgr.K03116' => 'egr', 'FAN02G3963' => 'fan', 'FAN05G0438' => 'fan', 'FAN09G2434' => 'fan', 'FAN12G3984' => 'fan', 'FAN14G0798' => 'fan', 'FAN17G0652' => 'fan', 'FAN19G1988' => 'fan', 'FAN22G0632' => 'fan', 'FAN23G0387' => 'fan', 'FAN26G1323' => 'fan', 'FAN28G0666' => 'fan', 'FvH4_1g26080' => 'fve', 'FvH4_3g36780' => 'fve', 'FvH4_4g15270' => 'fve', 'FvH4_6g13490' => 'fve', 'Glyma.01G098700' => 'gma', 'Glyma.03G065900' => 'gma', 'Glyma.03G073754' => 'gma', 'Glyma.03G073758' => 'gma', 'Glyma.03G083200' => 'gma', 'Glyma.03G225500' => 'gma', 'Glyma.05G037766' => 'gma', 'Glyma.07G133500' => 'gma', 'Glyma.10G139400' => 'gma', 'Glyma.10G248900' => 'gma', 'Glyma.11G137800' => 'gma', 'Glyma.12G061300' => 'gma', 'Glyma.13G337900' => 'gma', 'Glyma.15G036600' => 'gma', 'Glyma.18G182800' => 'gma', 'Glyma.19G222500' => 'gma', 'Glyma.20G144800' => 'gma', 'Gohir.A01G222000' => 'ghi', 'Gohir.A03G044000' => 'ghi', 'Gohir.A03G044100' => 'ghi', 'Gohir.A04G083100' => 'ghi', 'Gohir.A07G127200' => 'ghi', 'Gohir.A07G132400' => 'ghi', 'Gohir.A08G000700' => 'ghi', 'Gohir.A11G327300' => 'ghi', 'Gohir.D01G211500' => 'ghi', 'Gohir.D03G123400' => 'ghi', 'Gohir.D03G123500' => 'ghi', 'Gohir.D04G121800' => 'ghi', 'Gohir.D07G131500' => 'ghi', 'Gohir.D07G136600' => 'ghi', 'Gohir.D08G011600' => 'ghi', 'Gohir.D11G346200' => 'ghi', 'Gorai.001G142800' => 'gra', 'Gorai.001G148700' => 'gra', 'Gorai.002G257300' => 'gra', 'Gorai.003G130000' => 'gra', 'Gorai.003G130100' => 'gra', 'Gorai.004G005300' => 'gra', 'Gorai.007G376500' => 'gra', 'Gorai.012G104700' => 'gra', 'GSVIVG01017946001' => 'vvi', 'GSVIVG01024928001' => 'vvi', 'GSVIVG01028227001' => 'vvi', 'GSVIVG01034151001' => 'vvi', 'HanXRQChr05g0135031' => 'han', 'HanXRQChr05g0135041' => 'han', 'HanXRQChr05g0140021' => 'han', 'HanXRQChr06g0178981' => 'han', 'HanXRQChr07g0188251' => 'han', 'HanXRQChr08g0235311' => 'han', 'HanXRQChr09g0271011' => 'han', 'HanXRQChr10g0293321' => 'han', 'HanXRQChr13g0388171' => 'han', 'Haze_00916' => 'cav', 'Haze_05063' => 'cav', 'Haze_20814' => 'cav', 'Haze_24128' => 'cav', 'Hma1.2p1_0745F.1_g212010' => 'hma', 'Hma1.2p1_0757F.1_g213260' => 'hma', 'Hma1.2p1_0936F.1_g238840' => 'hma', 'Hma1.2p1_1735F.1_g299890' => 'hma', 'Hma1.2p1_1861F.1_g305685' => 'hma', 'HPP92_003397' => 'vpl', 'HPP92_012597' => 'vpl', 'HPP92_015520' => 'vpl', 'HPP92_015539' => 'vpl', 'HPP92_020373' => 'vpl', 'Hund04938' => 'sun', 'Hund10677' => 'sun', 'Hund11033' => 'sun', 'Hund12155' => 'sun', 'Lalb_Chr01g0022551' => 'lal', 'Lalb_Chr03g0042341' => 'lal', 'Lalb_Chr07g0192931' => 'lal', 'Lalb_Chr12g0209551' => 'lal', 'Lalb_Chr19g0125251' => 'lal', 'Lalb_Chr19g0137891' => 'lal', 'Lalb_Chr21g0304641' => 'lal', 'Lalb_Chr21g0309881' => 'lal', 'Lj1A5T12' => 'lonja', 'Lj1C148G10' => 'lonja', 'Lj2A93T83' => 'lonja', 'Lj3A738G68' => 'lonja', 'Lj3C966T1' => 'lonja', 'Lj3g0018958' => 'lja', 'Lj3g0021831' => 'lja', 'Lj3g0025443' => 'lja', 'Lj4g0026809' => 'lja', 'Lj5g0012558' => 'lja', 'Lj5g0021586' => 'lja', 'Lsat_1_v5_gn_5_156840' => 'lsa', 'Lsat_1_v5_gn_8_73460' => 'lsa', 'Lsat_1_v5_gn_8_73481' => 'lsa', 'Lsat_1_v5_gn_9_31601' => 'lsa', 'Lsat_1_v5_gn_9_77320' => 'lsa', 'Manes.01G171300' => 'mes', 'Manes.01G171400' => 'mes', 'Manes.01G236100' => 'mes', 'Manes.02G130500' => 'mes', 'Manes.02G130600' => 'mes', 'Manes.03G180200' => 'mes', 'Manes.05G007000' => 'mes', 'Manes.08G084400' => 'mes', 'Manes.09G092600' => 'mes', 'Manes.15G027900' => 'mes', 'MBI04_g40948_MAGBIO' => 'mbi', 'MBI14_g12123_MAGBIO' => 'mbi', 'MBI18_g28915_MAGBIO' => 'mbi', 'MCO09G053' => 'mco', 'MCO11G782' => 'mco', 'MCO15G215' => 'mco', 'MD03G1088500' => 'mdo', 'MD03G1088600' => 'mdo', 'MD04G1130800' => 'mdo', 'MD09G1291700' => 'mdo', 'MD11G1097500' => 'mdo', 'MD11G1097600' => 'mdo', 'MD12G1143900' => 'mdo', 'MD13G1191400' => 'mdo', 'MD16G1191500' => 'mdo', 'Medtr1g085570' => 'mtr', 'Medtr1g104610' => 'mtr', 'Medtr2g097520' => 'mtr', 'Medtr4g021800' => 'mtr', 'Medtr4g021825' => 'mtr', 'Medtr4g064270' => 'mtr', 'Medtr4g064380' => 'mtr', 'Medtr7g062150' => 'mtr', 'MELO3C003138.2' => 'cme', 'MELO3C005187.2' => 'cme', 'MELO3C009252.2' => 'cme', 'MELO3C014481.2' => 'cme', 'MELO3C020616.2' => 'cme', 'MELO3C020617.2' => 'cme', 'MELO3C020618.2' => 'cme', 'Migut.G00328' => 'egut', 'Migut.J00320' => 'egut', 'Migut.L01000' => 'egut', 'Migut.L01953' => 'egut', 'MSTRG.10253' => 'ama', 'MSTRG.19077' => 'ama', 'MSTRG.26780' => 'ama', 'MSTRG.4023' => 'ama', 'MSTRG.5655' => 'ama', 'MSTRG.9992' => 'ama', 'Nitab4.5_0000043g0310' => 'nta', 'Nitab4.5_0000463g0080' => 'nta', 'Nitab4.5_0000705g0170' => 'nta', 'Nitab4.5_0001326g0060' => 'nta', 'Nitab4.5_0001628g0030' => 'nta', 'Nitab4.5_0002103g0110' => 'nta', 'Nitab4.5_0002946g0030' => 'nta', 'Nitab4.5_0004639g0030' => 'nta', 'Nn2g11149' => 'nnu', 'Nn2g13389' => 'nnu', 'Nn4g25326' => 'nnu', 'Nn4g26290' => 'nnu', 'Nn5g29865' => 'nnu', 'Oeu004163.1' => 'oeu', 'Oeu006901.1' => 'oeu', 'Oeu010096.1' => 'oeu', 'Oeu024340.1' => 'oeu', 'Oeu048369.1' => 'oeu', 'Os01g0973000' => 'osa', 'Os03g0273800' => 'osa', 'Os03g0701200' => 'osa', 'Os03g0834050' => 'osa', 'Os07g0634400' => 'osa', 'Peaxi162Scf00092g01414' => 'pax', 'Peaxi162Scf00165g00818' => 'pax', 'Peaxi162Scf00309g00516' => 'pax', 'Peaxi162Scf00774g00218' => 'pax', 'PGR004G1824' => 'pgr', 'PGR004G2606' => 'pgr', 'PGR031G2716' => 'pgr', 'PGR102G2460' => 'pgr', 'PGR142G2599' => 'pgr', 'PGSC0003DMG400000843' => 'stu', 'PGSC0003DMG400008829' => 'stu', 'PGSC0003DMG400030418' => 'stu', 'PGSC0003DMG400031834' => 'stu', 'PGSC0003DMG401028300' => 'stu', 'PGSC0003DMG402028300' => 'stu', 'Phvul.001G219300' => 'pvu', 'Phvul.007G056000' => 'pvu', 'Phvul.007G208000' => 'pvu', 'Phvul.008G119500' => 'pvu', 'Phvul.010G011200' => 'pvu', 'Phvul.010G014800' => 'pvu', 'Phvul.011G062900' => 'pvu', 'Phvul.L007043' => 'pvu', 'Potri.001G242300' => 'ptr', 'Potri.002G185300' => 'ptr', 'Potri.006G086900' => 'ptr', 'Potri.008G151700' => 'ptr', 'Potri.009G033500' => 'ptr', 'Potri.010G089300' => 'ptr', 'Potri.014G110800' => 'ptr', 'Pp3c27_8130' => 'ppa', 'Pp3c6_27410' => 'ppa', 'PRCOL_00001659' => 'pco', 'PRCOL_00001927' => 'pco', 'PRCOL_00003649' => 'pco', 'Prupe.1G011600' => 'ppe', 'Prupe.3G000800' => 'ppe', 'Prupe.3G001100' => 'ppe', 'Prupe.6G072700' => 'ppe', 'Prupe.6G072800' => 'ppe', 'Prupe.6G257300' => 'ppe', 'Prupe.8G033000' => 'ppe', 'Psat0s2633g0080' => 'psa', 'Psat0s3396g0080' => 'psa', 'Psat0s3396g0200' => 'psa', 'Psat3g139080' => 'psa', 'Psat5g285080' => 'psa', 'Psat6g157760' => 'psa', 'Psat6g208440' => 'psa', 'Psat7g215320' => 'psa', 'Psat7g215400' => 'psa', 'Psat7g235600' => 'psa', 'Psat7g235760' => 'psa', 'PSO063G4603' => 'pso', 'PSO210G0182' => 'pso', 'PSO210G0196' => 'pso', 'PSO339G0394' => 'pso', 'PSO339G4127' => 'pso', 'PSO513G0064' => 'pso', 'PSO761G0079' => 'pso', 'QL01p031003' => 'qlo', 'QL01p031078' => 'qlo', 'QL06p003004' => 'qlo', 'QL07p048731' => 'qlo', 'QL09p037427' => 'qlo', 'RcHm_v2.0_Chr3g0466361' => 'rch', 'RcHm_v2.0_Chr3g0485571' => 'rch', 'RcHm_v2.0_Chr4g0416551' => 'rch', 'RcHm_v2.0_Chr5g0065831' => 'rch', 'Rhsim01G0230500' => 'rsi', 'Rhsim05G0194000' => 'rsi', 'Rhsim08G0250400' => 'rsi', 'Sabra02G0131000' => 'sbr', 'Sabra06G0066300' => 'sbr', 'Sabra08G0115500' => 'sbr', 'Sabra09G0023900' => 'sbr', 'Sabra10G0054000' => 'sbr', 'Sabra14G0081500' => 'sbr', 'Sabra16G0147100' => 'sbr', 'SalBow2G2957' => 'sbo', 'SalBow4G3320' => 'sbo', 'SalBow8G1894' => 'sbo', 'Sc07g0007950' => 'sci', 'Sc12g0001360' => 'sci', 'Sc13g0004330' => 'sci', 'Sc20g0005010' => 'sci', 'Sed0000361' => 'sed', 'Sed0001706' => 'sed', 'Sed0002422' => 'sed', 'Sed0004029' => 'sed', 'Sed0004602' => 'sed', 'Sed0004943' => 'sed', 'Sed0008646' => 'sed', 'Sed0023313' => 'sed', 'Sed0024843' => 'sed', 'SEGI_00081' => 'sgi', 'SEGI_00947' => 'sgi', 'SEGI_04046' => 'sgi', 'SEGI_06880' => 'sgi', 'SEGI_09736' => 'sgi', 'SEGI_12741' => 'sgi', 'SEGI_14530' => 'sgi', 'SEGI_20705' => 'sgi', 'SEGI_26088' => 'sgi', 'SEGI_28323' => 'sgi', 'SEGI_33343' => 'sgi', 'SGA_v2.0_scaffold126G33775' => 'sas', 'SGA_v2.0_scaffold2G01337' => 'sas', 'SGA_v2.0_scaffold38G15006' => 'sas', 'SGA_v2.0_scaffold39G15264' => 'sas', 'SGA_v2.0_scaffold453G51880' => 'sas', 'SHI12696' => 'shi', 'SMO367G1096' => 'smo', 'Solyc01g068630.3' => 'sly', 'Solyc05g011880.3' => 'sly', 'Solyc06g076300.3' => 'sly', 'Solyc09g010940.4' => 'sly', 'Solyc09g075890.3' => 'sly', 'Sopen01g030560' => 'spe', 'Sopen05g006630' => 'spe', 'Sopen06g032720' => 'spe', 'Sopen09g005660' => 'spe', 'Sopen09g030690' => 'spe', 'Sp4g14540' => 'spa', 'Sp4g20030' => 'spa', 'Sp5g01320' => 'spa', 'Sp6g21170' => 'spa', 'Sp6g21180' => 'spa', 'Sp6g21190' => 'spa', 'Sp6g40220' => 'spa', 'TAR362G0122' => 'tar', 'TAR362G1338' => 'tar', 'TAR369G0590' => 'tar', 'TAR371G0824' => 'tar', 'TAR622G1429' => 'tar', 'TAR623G0734' => 'tar', 'TAR625G0441' => 'tar', 'TAR629G0976' => 'tar', 'TAR633G1195' => 'tar', 'TAR636G2660' => 'tar', 'THA.LOC104799440' => 'tha', 'THA.LOC104800966' => 'tha', 'THA.LOC104806559' => 'tha', 'THA.LOC104810765' => 'tha', 'THA.LOC104816266' => 'tha', 'THA.LOC104817419' => 'tha', 'THA.LOC104827021' => 'tha', 'Thecc.01G327400' => 'tca', 'Thecc.04G229200' => 'tca', 'Thecc.05G037400' => 'tca', 'Thecc.09G318600' => 'tca', 'Thecc.09G318700' => 'tca', 'Thhalv10006238m.g' => 'esa', 'Thhalv10014321m.g' => 'esa', 'Thhalv10014335m.g' => 'esa', 'Thhalv10015826m.g' => 'esa', 'Thhalv10017107m.g' => 'esa', 'Thhalv10017180m.g' => 'esa', 'Thhalv10029339m.g' => 'esa', 'TPR.G1699' => 'tpr', 'TPR.G23609' => 'tpr', 'TPR.G3081' => 'tpr', 'TPR.G40397' => 'tpr', 'TPR.G5522' => 'tpr', 'TPR.G5618' => 'tpr', 'TPR.G5626' => 'tpr', 'TWI09G1632' => 'twi', 'TWI23G1230' => 'twi', 'TWI53G1064' => 'twi', 'TWI59G0751' => 'twi', 'TWI74G0947' => 'twi', 'TWI77G0337' => 'twi', 'TWI79G1254' => 'twi', 'unitig_0.g2341' => 'ugi', 'unitig_26.g10006' => 'ugi', 'unitig_26.g10008' => 'ugi', 'unitig_26.g9192' => 'ugi', 'vmacro14547' => 'vma', 'vmacro15333' => 'vma', 'vmacro18743' => 'vma', 'vmacro20166' => 'vma', 'VMungo0331G0523' => 'vmu', 'VMungo0331G1202' => 'vmu', 'VMungo0720G1228' => 'vmu', 'VMungo0720G1514' => 'vmu', 'VMungo1080G0169' => 'vmu', 'VMungo1127G1475' => 'vmu', 'VMungo1383G1208' => 'vmu', 'VMungo1383G1698' => 'vmu', 'Zm00001eb012270' => 'zma', 'Zm00001eb054100' => 'zma', 'Zm00001eb063350' => 'zma', 'Zm00001eb328560' => 'zma', 'Zm00001eb342820' => 'zma', 'Zm00001eb362210' => 'zma', 'Zm00001eb397730' => 'zma', 'Zm00001eb399750' => 'zma' ) $gf_id = 'HOM05D000959' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000959' ) $data_identifier = 'HOM05D000959' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 5, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 5, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 10, 'mbi' => (int) 3, 'mco' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 2, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 3, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 11, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399750' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000959', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '622', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p07100' => 'bna', 'A03p11720' => 'bna', 'A05p08300' => 'bna', 'A05p13380' => 'bna', 'A09p54130' => 'bna', 'A10p16690' => 'bna', 'A10p16700' => 'bna', 'A10p33390' => 'bna', 'Aa31LG10G16020' => 'aar', 'Aa31LG1G11810' => 'aar', 'Aa31LG1G11830' => 'aar', 'Aa31LG1G22510' => 'aar', 'Aa31LG5G4890' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5793' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2310' => 'aag', 'Actinidia08499' => 'ach', 'Actinidia11262' => 'ach', 'Actinidia23926' => 'ach', 'Actinidia34420' => 'ach', 'Actinidia36970' => 'ach', 'Ah.02g111220' => 'amhyb', 'Ah.15g097750' => 'amhyb', 'AL4G27500' => 'aly', 'AL6G11470' => 'aly', 'AL8G35950' => 'aly', 'AL8G35960' => 'aly', 'AL8G35970' => 'aly', 'Aqoxy1G00912' => 'aox', 'Aqoxy2G02253' => 'aox', 'Aqoxy2G02411' => 'aox', 'Aqoxy5G00485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BZ66YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K8ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM4FUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6BF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HFV7XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25JBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0YNNV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MAKK6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P70IT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP2Z6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V61LZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YWP64R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3S9AI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7PGHH' => 'arhy', 'AT2G32150' => 'ath', 'AT3G62040' => 'ath', 'AT5G02230' => 'ath', 'AT5G59480' => 'ath', 'AT5G59490' => 'ath', 'ATR0332G060' => 'atr', 'ATR0559G190' => 'atr', 'ATR0693G294' => 'atr', 'Atru.chr3.3975' => 'acertr', 'Atru.chr3.3976' => 'acertr', 'Atru.chr3.3977' => 'acertr', 'Atru.chr4.2498' => 'acertr', 'Atru.chr5.838' => 'acertr', 'Atru.chr8.1990' => 'acertr', 'Atru.chr8.1991' => 'acertr', 'Atru.chr8.1992' => 'acertr', 'AUR62001759' => 'cqu', 'AUR62009545' => 'cqu', 'AUR62010474' => 'cqu', 'AUR62025820' => 'cqu', 'AUR62030422' => 'cqu', 'AUR62033605' => 'cqu', 'AUR62038615' => 'cqu', 'AUR62041347' => 'cqu', 'BcaB01g04574' => 'bca', 'BcaB02g09263' => 'bca', 'BcaB02g10453' => 'bca', 'BcaB05g22513' => 'bca', 'BcaB08g36253' => 'bca', 'BcaB08g36254' => 'bca', 'BcaC01g06519' => 'bca', 'BcaC02g11889' => 'bca', 'BcaC03g14010' => 'bca', 'BcaC03g18439' => 'bca', 'BcaC04g19765' => 'bca', 'BcaC09g48432' => 'bca', 'BcaNung07302' => 'bca', 'BolC2t06040H' => 'bol', 'BolC2t07346H' => 'bol', 'BolC3t13817H' => 'bol', 'BolC4t22625H' => 'bol', 'BolC4t23297H' => 'bol', 'BolC8t51278H' => 'bol', 'BolC9t58050H' => 'bol', 'BolC9t58051H' => 'bol', 'BolC9t60163H' => 'bol', 'BraA02t04712Z' => 'bra', 'BraA02t05791Z' => 'bra', 'BraA03t10483Z' => 'bra', 'BraA05t19795Z' => 'bra', 'BraA05t20276Z' => 'bra', 'BraA09t40827Z' => 'bra', 'BraA10t43750Z' => 'bra', 'BraA10t43751Z' => 'bra', 'BraA10t45370Z' => 'bra', 'C02p00400' => 'bna', 'C02p12460' => 'bna', 'C03p13680' => 'bna', 'C04p10270' => 'bna', 'C04p17500' => 'bna', 'C08p37010' => 'bna', 'C09p51880' => 'bna', 'C09p51890' => 'bna', 'C09p74300' => 'bna', 'CAN.G179.26' => 'can', 'CAN.G3384.1' => 'can', 'CAN.G394.68' => 'can', 'CAN.G907.13' => 'can', 'CANSAT11G0012' => 'cansat', 'CANSAT25G1586' => 'cansat', 'CANSAT35G0735' => 'cansat', 'CANSAT54G0556' => 'cansat', 'CANSAT64G0356' => 'cansat', 'CANSAT78G2042' => 'cansat', 'CARHR125920' => 'chi', 'CARHR131910' => 'chi', 'CARHR172390' => 'chi', 'CARHR211140' => 'chi', 'CARHR285850' => 'chi', 'CARHR285860' => 'chi', 'Carub.0004s1347' => 'cru', 'Carub.0004s1960' => 'cru', 'Carub.0005s2880' => 'cru', 'Carub.0006s0107' => 'cru', 'Carub.0008s2015' => 'cru', 'Carub.0008s2016' => 'cru', 'Carub.0008s2017' => 'cru', 'Ca_01315_v3' => 'car', 'Ca_05063_v3' => 'car', 'Ca_10231_v3' => 'car', 'Ca_10913_v3' => 'car', 'Ca_19156_v3' => 'car', 'Ca_23644_v3' => 'car', 'Ca_26735_v3' => 'car', 'Cc01_g13130' => 'ccan', 'Cc02_g21690' => 'ccan', 'Cc03_g03600' => 'ccan', 'Cc06_g02510' => 'ccan', 'CDE02G1265' => 'cde', 'CDE05G0415' => 'cde', 'CDE08G1082' => 'cde', 'Cfa005780' => 'cfa', 'Cfa011522' => 'cfa', 'Cfa011523' => 'cfa', 'Cfa015627' => 'cfa', 'Cfa017359' => 'cfa', 'Ciclev10005687m.g' => 'ccl', 'Ciclev10012173m.g' => 'ccl', 'Ciclev10021621m.g' => 'ccl', 'Ciclev10028968m.g' => 'ccl', 'Ciclev10029907m.g' => 'ccl', 'CiPaw.01G164800' => 'cil', 'CiPaw.07G083700' => 'cil', 'CiPaw.07G127000' => 'cil', 'CiPaw.07G136900' => 'cil', 'CiPaw.08G081700' => 'cil', 'CiPaw.09G194600' => 'cil', 'CiPaw.10G146500' => 'cil', 'CiPaw.13G091500' => 'cil', 'CiPaw.13G091600' => 'cil', 'ClCG00G003390' => 'cla', 'ClCG01G007220' => 'cla', 'ClCG03G001370' => 'cla', 'ClCG04G008100' => 'cla', 'ClCG06G006110' => 'cla', 'ClCG06G006130' => 'cla', 'ClCG10G021210' => 'cla', 'COL.COLO4_07648' => 'col', 'COL.COLO4_07650' => 'col', 'COL.COLO4_07651' => 'col', 'COL.COLO4_14780' => 'col', 'COL.COLO4_18546' => 'col', 'COL.COLO4_18547' => 'col', 'COL.COLO4_23103' => 'col', 'COL.COLO4_30419' => 'col', 'COL.COLO4_34232' => 'col', 'Cpa.g.sc169.20' => 'cpa', 'Cpa.g.sc57.45' => 'cpa', 'Cpa.g.sc58.124' => 'cpa', 'Cpa.g.sc58.125' => 'cpa', 'Cpa.g.sc81.118' => 'cpa', 'Cpa.g.sc81.119' => 'cpa', 'Cre12.g524700' => 'cre', 'CsaV3_1G034430' => 'csa', 'CsaV3_1G034440' => 'csa', 'CsaV3_1G034450' => 'csa', 'CsaV3_3G034830' => 'csa', 'CsaV3_4G025090' => 'csa', 'CsaV3_5G018660' => 'csa', 'CsaV3_6G038160' => 'csa', 'CSS0003447' => 'camsi', 'CSS0017840' => 'camsi', 'CSS0019260' => 'camsi', 'CSS0040375' => 'camsi', 'CSS0042533' => 'camsi', 'DCAR_005960' => 'dca', 'DCAR_012104' => 'dca', 'DCAR_012105' => 'dca', 'DCAR_012293' => 'dca', 'DCAR_015632' => 'dca', 'DCAR_024602' => 'dca', 'DCAR_028752' => 'dca', 'Dinv06261' => 'din', 'Dinv13982' => 'din', 'Dinv17029' => 'din', 'Dinv18463' => 'din', 'Dinv33181' => 'din', 'Dinv35585' => 'din', 'Dinv37161' => 'din', 'Dinv42977' => 'din', 'Dinv43122' => 'din', 'Dinv44517' => 'din', 'Duzib093G0256' => 'dzi', 'Duzib106G1254' => 'dzi', 'Duzib128G1789' => 'dzi', 'Duzib133G0633' => 'dzi', 'Duzib138G0510' => 'dzi', 'Duzib150G1084' => 'dzi', 'Duzib168G0488' => 'dzi', 'Duzib168G1523' => 'dzi', 'Duzib170G0133' => 'dzi', 'ECA234G1433' => 'eca', 'ECA236G1432' => 'eca', 'ECA236G2256' => 'eca', 'ECA236G2365' => 'eca', 'ECA236G4830' => 'eca', 'ECA248G1505' => 'eca', 'EL10Ac3g06431' => 'bvu', 'EL10Ac5g12577' => 'bvu', 'EL10Ac6g13533' => 'bvu', 'EL10Ac7g16045' => 'bvu', 'Eucgr.A01281' => 'egr', 'Eucgr.B02326' => 'egr', 'Eucgr.H03532' => 'egr', 'Eucgr.K00553' => 'egr', 'Eucgr.K03116' => 'egr', 'FAN02G3963' => 'fan', 'FAN05G0438' => 'fan', 'FAN09G2434' => 'fan', 'FAN12G3984' => 'fan', 'FAN14G0798' => 'fan', 'FAN17G0652' => 'fan', 'FAN19G1988' => 'fan', 'FAN22G0632' => 'fan', 'FAN23G0387' => 'fan', 'FAN26G1323' => 'fan', 'FAN28G0666' => 'fan', 'FvH4_1g26080' => 'fve', 'FvH4_3g36780' => 'fve', 'FvH4_4g15270' => 'fve', 'FvH4_6g13490' => 'fve', 'Glyma.01G098700' => 'gma', 'Glyma.03G065900' => 'gma', 'Glyma.03G073754' => 'gma', 'Glyma.03G073758' => 'gma', 'Glyma.03G083200' => 'gma', 'Glyma.03G225500' => 'gma', 'Glyma.05G037766' => 'gma', 'Glyma.07G133500' => 'gma', 'Glyma.10G139400' => 'gma', 'Glyma.10G248900' => 'gma', 'Glyma.11G137800' => 'gma', 'Glyma.12G061300' => 'gma', 'Glyma.13G337900' => 'gma', 'Glyma.15G036600' => 'gma', 'Glyma.18G182800' => 'gma', 'Glyma.19G222500' => 'gma', 'Glyma.20G144800' => 'gma', 'Gohir.A01G222000' => 'ghi', 'Gohir.A03G044000' => 'ghi', 'Gohir.A03G044100' => 'ghi', 'Gohir.A04G083100' => 'ghi', 'Gohir.A07G127200' => 'ghi', 'Gohir.A07G132400' => 'ghi', 'Gohir.A08G000700' => 'ghi', 'Gohir.A11G327300' => 'ghi', 'Gohir.D01G211500' => 'ghi', 'Gohir.D03G123400' => 'ghi', 'Gohir.D03G123500' => 'ghi', 'Gohir.D04G121800' => 'ghi', 'Gohir.D07G131500' => 'ghi', 'Gohir.D07G136600' => 'ghi', 'Gohir.D08G011600' => 'ghi', 'Gohir.D11G346200' => 'ghi', 'Gorai.001G142800' => 'gra', 'Gorai.001G148700' => 'gra', 'Gorai.002G257300' => 'gra', 'Gorai.003G130000' => 'gra', 'Gorai.003G130100' => 'gra', 'Gorai.004G005300' => 'gra', 'Gorai.007G376500' => 'gra', 'Gorai.012G104700' => 'gra', 'GSVIVG01017946001' => 'vvi', 'GSVIVG01024928001' => 'vvi', 'GSVIVG01028227001' => 'vvi', 'GSVIVG01034151001' => 'vvi', 'HanXRQChr05g0135031' => 'han', 'HanXRQChr05g0135041' => 'han', 'HanXRQChr05g0140021' => 'han', 'HanXRQChr06g0178981' => 'han', 'HanXRQChr07g0188251' => 'han', 'HanXRQChr08g0235311' => 'han', 'HanXRQChr09g0271011' => 'han', 'HanXRQChr10g0293321' => 'han', 'HanXRQChr13g0388171' => 'han', 'Haze_00916' => 'cav', 'Haze_05063' => 'cav', 'Haze_20814' => 'cav', 'Haze_24128' => 'cav', 'Hma1.2p1_0745F.1_g212010' => 'hma', 'Hma1.2p1_0757F.1_g213260' => 'hma', 'Hma1.2p1_0936F.1_g238840' => 'hma', 'Hma1.2p1_1735F.1_g299890' => 'hma', 'Hma1.2p1_1861F.1_g305685' => 'hma', 'HPP92_003397' => 'vpl', 'HPP92_012597' => 'vpl', 'HPP92_015520' => 'vpl', 'HPP92_015539' => 'vpl', 'HPP92_020373' => 'vpl', 'Hund04938' => 'sun', 'Hund10677' => 'sun', 'Hund11033' => 'sun', 'Hund12155' => 'sun', 'Lalb_Chr01g0022551' => 'lal', 'Lalb_Chr03g0042341' => 'lal', 'Lalb_Chr07g0192931' => 'lal', 'Lalb_Chr12g0209551' => 'lal', 'Lalb_Chr19g0125251' => 'lal', 'Lalb_Chr19g0137891' => 'lal', 'Lalb_Chr21g0304641' => 'lal', 'Lalb_Chr21g0309881' => 'lal', 'Lj1A5T12' => 'lonja', 'Lj1C148G10' => 'lonja', 'Lj2A93T83' => 'lonja', 'Lj3A738G68' => 'lonja', 'Lj3C966T1' => 'lonja', 'Lj3g0018958' => 'lja', 'Lj3g0021831' => 'lja', 'Lj3g0025443' => 'lja', 'Lj4g0026809' => 'lja', 'Lj5g0012558' => 'lja', 'Lj5g0021586' => 'lja', 'Lsat_1_v5_gn_5_156840' => 'lsa', 'Lsat_1_v5_gn_8_73460' => 'lsa', 'Lsat_1_v5_gn_8_73481' => 'lsa', 'Lsat_1_v5_gn_9_31601' => 'lsa', 'Lsat_1_v5_gn_9_77320' => 'lsa', 'Manes.01G171300' => 'mes', 'Manes.01G171400' => 'mes', 'Manes.01G236100' => 'mes', 'Manes.02G130500' => 'mes', 'Manes.02G130600' => 'mes', 'Manes.03G180200' => 'mes', 'Manes.05G007000' => 'mes', 'Manes.08G084400' => 'mes', 'Manes.09G092600' => 'mes', 'Manes.15G027900' => 'mes', 'MBI04_g40948_MAGBIO' => 'mbi', 'MBI14_g12123_MAGBIO' => 'mbi', 'MBI18_g28915_MAGBIO' => 'mbi', 'MCO09G053' => 'mco', 'MCO11G782' => 'mco', 'MCO15G215' => 'mco', 'MD03G1088500' => 'mdo', 'MD03G1088600' => 'mdo', 'MD04G1130800' => 'mdo', 'MD09G1291700' => 'mdo', 'MD11G1097500' => 'mdo', 'MD11G1097600' => 'mdo', 'MD12G1143900' => 'mdo', 'MD13G1191400' => 'mdo', 'MD16G1191500' => 'mdo', 'Medtr1g085570' => 'mtr', 'Medtr1g104610' => 'mtr', 'Medtr2g097520' => 'mtr', 'Medtr4g021800' => 'mtr', 'Medtr4g021825' => 'mtr', 'Medtr4g064270' => 'mtr', 'Medtr4g064380' => 'mtr', 'Medtr7g062150' => 'mtr', 'MELO3C003138.2' => 'cme', 'MELO3C005187.2' => 'cme', 'MELO3C009252.2' => 'cme', 'MELO3C014481.2' => 'cme', 'MELO3C020616.2' => 'cme', 'MELO3C020617.2' => 'cme', 'MELO3C020618.2' => 'cme', 'Migut.G00328' => 'egut', 'Migut.J00320' => 'egut', 'Migut.L01000' => 'egut', 'Migut.L01953' => 'egut', 'MSTRG.10253' => 'ama', 'MSTRG.19077' => 'ama', 'MSTRG.26780' => 'ama', 'MSTRG.4023' => 'ama', 'MSTRG.5655' => 'ama', 'MSTRG.9992' => 'ama', 'Nitab4.5_0000043g0310' => 'nta', 'Nitab4.5_0000463g0080' => 'nta', 'Nitab4.5_0000705g0170' => 'nta', 'Nitab4.5_0001326g0060' => 'nta', 'Nitab4.5_0001628g0030' => 'nta', 'Nitab4.5_0002103g0110' => 'nta', 'Nitab4.5_0002946g0030' => 'nta', 'Nitab4.5_0004639g0030' => 'nta', 'Nn2g11149' => 'nnu', 'Nn2g13389' => 'nnu', 'Nn4g25326' => 'nnu', 'Nn4g26290' => 'nnu', 'Nn5g29865' => 'nnu', 'Oeu004163.1' => 'oeu', 'Oeu006901.1' => 'oeu', 'Oeu010096.1' => 'oeu', 'Oeu024340.1' => 'oeu', 'Oeu048369.1' => 'oeu', 'Os01g0973000' => 'osa', 'Os03g0273800' => 'osa', 'Os03g0701200' => 'osa', 'Os03g0834050' => 'osa', 'Os07g0634400' => 'osa', 'Peaxi162Scf00092g01414' => 'pax', 'Peaxi162Scf00165g00818' => 'pax', 'Peaxi162Scf00309g00516' => 'pax', 'Peaxi162Scf00774g00218' => 'pax', 'PGR004G1824' => 'pgr', 'PGR004G2606' => 'pgr', 'PGR031G2716' => 'pgr', 'PGR102G2460' => 'pgr', 'PGR142G2599' => 'pgr', 'PGSC0003DMG400000843' => 'stu', 'PGSC0003DMG400008829' => 'stu', 'PGSC0003DMG400030418' => 'stu', 'PGSC0003DMG400031834' => 'stu', 'PGSC0003DMG401028300' => 'stu', 'PGSC0003DMG402028300' => 'stu', 'Phvul.001G219300' => 'pvu', 'Phvul.007G056000' => 'pvu', 'Phvul.007G208000' => 'pvu', 'Phvul.008G119500' => 'pvu', 'Phvul.010G011200' => 'pvu', 'Phvul.010G014800' => 'pvu', 'Phvul.011G062900' => 'pvu', 'Phvul.L007043' => 'pvu', 'Potri.001G242300' => 'ptr', 'Potri.002G185300' => 'ptr', 'Potri.006G086900' => 'ptr', 'Potri.008G151700' => 'ptr', 'Potri.009G033500' => 'ptr', 'Potri.010G089300' => 'ptr', 'Potri.014G110800' => 'ptr', 'Pp3c27_8130' => 'ppa', 'Pp3c6_27410' => 'ppa', 'PRCOL_00001659' => 'pco', 'PRCOL_00001927' => 'pco', 'PRCOL_00003649' => 'pco', 'Prupe.1G011600' => 'ppe', 'Prupe.3G000800' => 'ppe', 'Prupe.3G001100' => 'ppe', 'Prupe.6G072700' => 'ppe', 'Prupe.6G072800' => 'ppe', 'Prupe.6G257300' => 'ppe', 'Prupe.8G033000' => 'ppe', 'Psat0s2633g0080' => 'psa', 'Psat0s3396g0080' => 'psa', 'Psat0s3396g0200' => 'psa', 'Psat3g139080' => 'psa', 'Psat5g285080' => 'psa', 'Psat6g157760' => 'psa', 'Psat6g208440' => 'psa', 'Psat7g215320' => 'psa', 'Psat7g215400' => 'psa', 'Psat7g235600' => 'psa', 'Psat7g235760' => 'psa', 'PSO063G4603' => 'pso', 'PSO210G0182' => 'pso', 'PSO210G0196' => 'pso', 'PSO339G0394' => 'pso', 'PSO339G4127' => 'pso', 'PSO513G0064' => 'pso', 'PSO761G0079' => 'pso', 'QL01p031003' => 'qlo', 'QL01p031078' => 'qlo', 'QL06p003004' => 'qlo', 'QL07p048731' => 'qlo', 'QL09p037427' => 'qlo', 'RcHm_v2.0_Chr3g0466361' => 'rch', 'RcHm_v2.0_Chr3g0485571' => 'rch', 'RcHm_v2.0_Chr4g0416551' => 'rch', 'RcHm_v2.0_Chr5g0065831' => 'rch', 'Rhsim01G0230500' => 'rsi', 'Rhsim05G0194000' => 'rsi', 'Rhsim08G0250400' => 'rsi', 'Sabra02G0131000' => 'sbr', 'Sabra06G0066300' => 'sbr', 'Sabra08G0115500' => 'sbr', 'Sabra09G0023900' => 'sbr', 'Sabra10G0054000' => 'sbr', 'Sabra14G0081500' => 'sbr', 'Sabra16G0147100' => 'sbr', 'SalBow2G2957' => 'sbo', 'SalBow4G3320' => 'sbo', 'SalBow8G1894' => 'sbo', 'Sc07g0007950' => 'sci', 'Sc12g0001360' => 'sci', 'Sc13g0004330' => 'sci', 'Sc20g0005010' => 'sci', 'Sed0000361' => 'sed', 'Sed0001706' => 'sed', 'Sed0002422' => 'sed', 'Sed0004029' => 'sed', 'Sed0004602' => 'sed', 'Sed0004943' => 'sed', 'Sed0008646' => 'sed', 'Sed0023313' => 'sed', 'Sed0024843' => 'sed', 'SEGI_00081' => 'sgi', 'SEGI_00947' => 'sgi', 'SEGI_04046' => 'sgi', 'SEGI_06880' => 'sgi', 'SEGI_09736' => 'sgi', 'SEGI_12741' => 'sgi', 'SEGI_14530' => 'sgi', 'SEGI_20705' => 'sgi', 'SEGI_26088' => 'sgi', 'SEGI_28323' => 'sgi', 'SEGI_33343' => 'sgi', 'SGA_v2.0_scaffold126G33775' => 'sas', 'SGA_v2.0_scaffold2G01337' => 'sas', 'SGA_v2.0_scaffold38G15006' => 'sas', 'SGA_v2.0_scaffold39G15264' => 'sas', 'SGA_v2.0_scaffold453G51880' => 'sas', 'SHI12696' => 'shi', 'SMO367G1096' => 'smo', 'Solyc01g068630.3' => 'sly', 'Solyc05g011880.3' => 'sly', 'Solyc06g076300.3' => 'sly', 'Solyc09g010940.4' => 'sly', 'Solyc09g075890.3' => 'sly', 'Sopen01g030560' => 'spe', 'Sopen05g006630' => 'spe', 'Sopen06g032720' => 'spe', 'Sopen09g005660' => 'spe', 'Sopen09g030690' => 'spe', 'Sp4g14540' => 'spa', 'Sp4g20030' => 'spa', 'Sp5g01320' => 'spa', 'Sp6g21170' => 'spa', 'Sp6g21180' => 'spa', 'Sp6g21190' => 'spa', 'Sp6g40220' => 'spa', 'TAR362G0122' => 'tar', 'TAR362G1338' => 'tar', 'TAR369G0590' => 'tar', 'TAR371G0824' => 'tar', 'TAR622G1429' => 'tar', 'TAR623G0734' => 'tar', 'TAR625G0441' => 'tar', 'TAR629G0976' => 'tar', 'TAR633G1195' => 'tar', 'TAR636G2660' => 'tar', 'THA.LOC104799440' => 'tha', 'THA.LOC104800966' => 'tha', 'THA.LOC104806559' => 'tha', 'THA.LOC104810765' => 'tha', 'THA.LOC104816266' => 'tha', 'THA.LOC104817419' => 'tha', 'THA.LOC104827021' => 'tha', 'Thecc.01G327400' => 'tca', 'Thecc.04G229200' => 'tca', 'Thecc.05G037400' => 'tca', 'Thecc.09G318600' => 'tca', 'Thecc.09G318700' => 'tca', 'Thhalv10006238m.g' => 'esa', 'Thhalv10014321m.g' => 'esa', 'Thhalv10014335m.g' => 'esa', 'Thhalv10015826m.g' => 'esa', 'Thhalv10017107m.g' => 'esa', 'Thhalv10017180m.g' => 'esa', 'Thhalv10029339m.g' => 'esa', 'TPR.G1699' => 'tpr', 'TPR.G23609' => 'tpr', 'TPR.G3081' => 'tpr', 'TPR.G40397' => 'tpr', 'TPR.G5522' => 'tpr', 'TPR.G5618' => 'tpr', 'TPR.G5626' => 'tpr', 'TWI09G1632' => 'twi', 'TWI23G1230' => 'twi', 'TWI53G1064' => 'twi', 'TWI59G0751' => 'twi', 'TWI74G0947' => 'twi', 'TWI77G0337' => 'twi', 'TWI79G1254' => 'twi', 'unitig_0.g2341' => 'ugi', 'unitig_26.g10006' => 'ugi', 'unitig_26.g10008' => 'ugi', 'unitig_26.g9192' => 'ugi', 'vmacro14547' => 'vma', 'vmacro15333' => 'vma', 'vmacro18743' => 'vma', 'vmacro20166' => 'vma', 'VMungo0331G0523' => 'vmu', 'VMungo0331G1202' => 'vmu', 'VMungo0720G1228' => 'vmu', 'VMungo0720G1514' => 'vmu', 'VMungo1080G0169' => 'vmu', 'VMungo1127G1475' => 'vmu', 'VMungo1383G1208' => 'vmu', 'VMungo1383G1698' => 'vmu', 'Zm00001eb012270' => 'zma', 'Zm00001eb054100' => 'zma', 'Zm00001eb063350' => 'zma', 'Zm00001eb328560' => 'zma', 'Zm00001eb342820' => 'zma', 'Zm00001eb362210' => 'zma', 'Zm00001eb397730' => 'zma', 'Zm00001eb399750' => 'zma' ), 'gf_id' => 'HOM05D000959', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000959' ), 'data_identifier' => 'HOM05D000959', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000959', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '622', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p07100' => 'bna', 'A03p11720' => 'bna', 'A05p08300' => 'bna', 'A05p13380' => 'bna', 'A09p54130' => 'bna', 'A10p16690' => 'bna', 'A10p16700' => 'bna', 'A10p33390' => 'bna', 'Aa31LG10G16020' => 'aar', 'Aa31LG1G11810' => 'aar', 'Aa31LG1G11830' => 'aar', 'Aa31LG1G22510' => 'aar', 'Aa31LG5G4890' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5793' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2310' => 'aag', 'Actinidia08499' => 'ach', 'Actinidia11262' => 'ach', 'Actinidia23926' => 'ach', 'Actinidia34420' => 'ach', 'Actinidia36970' => 'ach', 'Ah.02g111220' => 'amhyb', 'Ah.15g097750' => 'amhyb', 'AL4G27500' => 'aly', 'AL6G11470' => 'aly', 'AL8G35950' => 'aly', 'AL8G35960' => 'aly', 'AL8G35970' => 'aly', 'Aqoxy1G00912' => 'aox', 'Aqoxy2G02253' => 'aox', 'Aqoxy2G02411' => 'aox', 'Aqoxy5G00485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BZ66YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K8ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM4FUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6BF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HFV7XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25JBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0YNNV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MAKK6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P70IT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP2Z6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V61LZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YWP64R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3S9AI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7PGHH' => 'arhy', 'AT2G32150' => 'ath', 'AT3G62040' => 'ath', 'AT5G02230' => 'ath', 'AT5G59480' => 'ath', 'AT5G59490' => 'ath', 'ATR0332G060' => 'atr', 'ATR0559G190' => 'atr', 'ATR0693G294' => 'atr', 'Atru.chr3.3975' => 'acertr', 'Atru.chr3.3976' => 'acertr', 'Atru.chr3.3977' => 'acertr', 'Atru.chr4.2498' => 'acertr', 'Atru.chr5.838' => 'acertr', 'Atru.chr8.1990' => 'acertr', 'Atru.chr8.1991' => 'acertr', 'Atru.chr8.1992' => 'acertr', 'AUR62001759' => 'cqu', 'AUR62009545' => 'cqu', 'AUR62010474' => 'cqu', 'AUR62025820' => 'cqu', 'AUR62030422' => 'cqu', 'AUR62033605' => 'cqu', 'AUR62038615' => 'cqu', 'AUR62041347' => 'cqu', 'BcaB01g04574' => 'bca', 'BcaB02g09263' => 'bca', 'BcaB02g10453' => 'bca', 'BcaB05g22513' => 'bca', 'BcaB08g36253' => 'bca', 'BcaB08g36254' => 'bca', 'BcaC01g06519' => 'bca', 'BcaC02g11889' => 'bca', 'BcaC03g14010' => 'bca', 'BcaC03g18439' => 'bca', 'BcaC04g19765' => 'bca', 'BcaC09g48432' => 'bca', 'BcaNung07302' => 'bca', 'BolC2t06040H' => 'bol', 'BolC2t07346H' => 'bol', 'BolC3t13817H' => 'bol', 'BolC4t22625H' => 'bol', 'BolC4t23297H' => 'bol', 'BolC8t51278H' => 'bol', 'BolC9t58050H' => 'bol', 'BolC9t58051H' => 'bol', 'BolC9t60163H' => 'bol', 'BraA02t04712Z' => 'bra', 'BraA02t05791Z' => 'bra', 'BraA03t10483Z' => 'bra', 'BraA05t19795Z' => 'bra', 'BraA05t20276Z' => 'bra', 'BraA09t40827Z' => 'bra', 'BraA10t43750Z' => 'bra', 'BraA10t43751Z' => 'bra', 'BraA10t45370Z' => 'bra', 'C02p00400' => 'bna', 'C02p12460' => 'bna', 'C03p13680' => 'bna', 'C04p10270' => 'bna', 'C04p17500' => 'bna', 'C08p37010' => 'bna', 'C09p51880' => 'bna', 'C09p51890' => 'bna', 'C09p74300' => 'bna', 'CAN.G179.26' => 'can', 'CAN.G3384.1' => 'can', 'CAN.G394.68' => 'can', 'CAN.G907.13' => 'can', 'CANSAT11G0012' => 'cansat', 'CANSAT25G1586' => 'cansat', 'CANSAT35G0735' => 'cansat', 'CANSAT54G0556' => 'cansat', 'CANSAT64G0356' => 'cansat', 'CANSAT78G2042' => 'cansat', 'CARHR125920' => 'chi', 'CARHR131910' => 'chi', 'CARHR172390' => 'chi', 'CARHR211140' => 'chi', 'CARHR285850' => 'chi', 'CARHR285860' => 'chi', 'Carub.0004s1347' => 'cru', 'Carub.0004s1960' => 'cru', 'Carub.0005s2880' => 'cru', 'Carub.0006s0107' => 'cru', 'Carub.0008s2015' => 'cru', 'Carub.0008s2016' => 'cru', 'Carub.0008s2017' => 'cru', 'Ca_01315_v3' => 'car', 'Ca_05063_v3' => 'car', 'Ca_10231_v3' => 'car', 'Ca_10913_v3' => 'car', 'Ca_19156_v3' => 'car', 'Ca_23644_v3' => 'car', 'Ca_26735_v3' => 'car', 'Cc01_g13130' => 'ccan', 'Cc02_g21690' => 'ccan', 'Cc03_g03600' => 'ccan', 'Cc06_g02510' => 'ccan', 'CDE02G1265' => 'cde', 'CDE05G0415' => 'cde', 'CDE08G1082' => 'cde', 'Cfa005780' => 'cfa', 'Cfa011522' => 'cfa', 'Cfa011523' => 'cfa', 'Cfa015627' => 'cfa', 'Cfa017359' => 'cfa', 'Ciclev10005687m.g' => 'ccl', 'Ciclev10012173m.g' => 'ccl', 'Ciclev10021621m.g' => 'ccl', 'Ciclev10028968m.g' => 'ccl', 'Ciclev10029907m.g' => 'ccl', 'CiPaw.01G164800' => 'cil', 'CiPaw.07G083700' => 'cil', 'CiPaw.07G127000' => 'cil', 'CiPaw.07G136900' => 'cil', 'CiPaw.08G081700' => 'cil', 'CiPaw.09G194600' => 'cil', 'CiPaw.10G146500' => 'cil', 'CiPaw.13G091500' => 'cil', 'CiPaw.13G091600' => 'cil', 'ClCG00G003390' => 'cla', 'ClCG01G007220' => 'cla', 'ClCG03G001370' => 'cla', 'ClCG04G008100' => 'cla', 'ClCG06G006110' => 'cla', 'ClCG06G006130' => 'cla', 'ClCG10G021210' => 'cla', 'COL.COLO4_07648' => 'col', 'COL.COLO4_07650' => 'col', 'COL.COLO4_07651' => 'col', 'COL.COLO4_14780' => 'col', 'COL.COLO4_18546' => 'col', 'COL.COLO4_18547' => 'col', 'COL.COLO4_23103' => 'col', 'COL.COLO4_30419' => 'col', 'COL.COLO4_34232' => 'col', 'Cpa.g.sc169.20' => 'cpa', 'Cpa.g.sc57.45' => 'cpa', 'Cpa.g.sc58.124' => 'cpa', 'Cpa.g.sc58.125' => 'cpa', 'Cpa.g.sc81.118' => 'cpa', 'Cpa.g.sc81.119' => 'cpa', 'Cre12.g524700' => 'cre', 'CsaV3_1G034430' => 'csa', 'CsaV3_1G034440' => 'csa', 'CsaV3_1G034450' => 'csa', 'CsaV3_3G034830' => 'csa', 'CsaV3_4G025090' => 'csa', 'CsaV3_5G018660' => 'csa', 'CsaV3_6G038160' => 'csa', 'CSS0003447' => 'camsi', 'CSS0017840' => 'camsi', 'CSS0019260' => 'camsi', 'CSS0040375' => 'camsi', 'CSS0042533' => 'camsi', 'DCAR_005960' => 'dca', 'DCAR_012104' => 'dca', 'DCAR_012105' => 'dca', 'DCAR_012293' => 'dca', 'DCAR_015632' => 'dca', 'DCAR_024602' => 'dca', 'DCAR_028752' => 'dca', 'Dinv06261' => 'din', 'Dinv13982' => 'din', 'Dinv17029' => 'din', 'Dinv18463' => 'din', 'Dinv33181' => 'din', 'Dinv35585' => 'din', 'Dinv37161' => 'din', 'Dinv42977' => 'din', 'Dinv43122' => 'din', 'Dinv44517' => 'din', 'Duzib093G0256' => 'dzi', 'Duzib106G1254' => 'dzi', 'Duzib128G1789' => 'dzi', 'Duzib133G0633' => 'dzi', 'Duzib138G0510' => 'dzi', 'Duzib150G1084' => 'dzi', 'Duzib168G0488' => 'dzi', 'Duzib168G1523' => 'dzi', 'Duzib170G0133' => 'dzi', 'ECA234G1433' => 'eca', 'ECA236G1432' => 'eca', 'ECA236G2256' => 'eca', 'ECA236G2365' => 'eca', 'ECA236G4830' => 'eca', 'ECA248G1505' => 'eca', 'EL10Ac3g06431' => 'bvu', 'EL10Ac5g12577' => 'bvu', 'EL10Ac6g13533' => 'bvu', 'EL10Ac7g16045' => 'bvu', 'Eucgr.A01281' => 'egr', 'Eucgr.B02326' => 'egr', 'Eucgr.H03532' => 'egr', 'Eucgr.K00553' => 'egr', 'Eucgr.K03116' => 'egr', 'FAN02G3963' => 'fan', 'FAN05G0438' => 'fan', 'FAN09G2434' => 'fan', 'FAN12G3984' => 'fan', 'FAN14G0798' => 'fan', 'FAN17G0652' => 'fan', 'FAN19G1988' => 'fan', 'FAN22G0632' => 'fan', 'FAN23G0387' => 'fan', 'FAN26G1323' => 'fan', 'FAN28G0666' => 'fan', 'FvH4_1g26080' => 'fve', 'FvH4_3g36780' => 'fve', 'FvH4_4g15270' => 'fve', 'FvH4_6g13490' => 'fve', 'Glyma.01G098700' => 'gma', 'Glyma.03G065900' => 'gma', 'Glyma.03G073754' => 'gma', 'Glyma.03G073758' => 'gma', 'Glyma.03G083200' => 'gma', 'Glyma.03G225500' => 'gma', 'Glyma.05G037766' => 'gma', 'Glyma.07G133500' => 'gma', 'Glyma.10G139400' => 'gma', 'Glyma.10G248900' => 'gma', 'Glyma.11G137800' => 'gma', 'Glyma.12G061300' => 'gma', 'Glyma.13G337900' => 'gma', 'Glyma.15G036600' => 'gma', 'Glyma.18G182800' => 'gma', 'Glyma.19G222500' => 'gma', 'Glyma.20G144800' => 'gma', 'Gohir.A01G222000' => 'ghi', 'Gohir.A03G044000' => 'ghi', 'Gohir.A03G044100' => 'ghi', 'Gohir.A04G083100' => 'ghi', 'Gohir.A07G127200' => 'ghi', 'Gohir.A07G132400' => 'ghi', 'Gohir.A08G000700' => 'ghi', 'Gohir.A11G327300' => 'ghi', 'Gohir.D01G211500' => 'ghi', 'Gohir.D03G123400' => 'ghi', 'Gohir.D03G123500' => 'ghi', 'Gohir.D04G121800' => 'ghi', 'Gohir.D07G131500' => 'ghi', 'Gohir.D07G136600' => 'ghi', 'Gohir.D08G011600' => 'ghi', 'Gohir.D11G346200' => 'ghi', 'Gorai.001G142800' => 'gra', 'Gorai.001G148700' => 'gra', 'Gorai.002G257300' => 'gra', 'Gorai.003G130000' => 'gra', 'Gorai.003G130100' => 'gra', 'Gorai.004G005300' => 'gra', 'Gorai.007G376500' => 'gra', 'Gorai.012G104700' => 'gra', 'GSVIVG01017946001' => 'vvi', 'GSVIVG01024928001' => 'vvi', 'GSVIVG01028227001' => 'vvi', 'GSVIVG01034151001' => 'vvi', 'HanXRQChr05g0135031' => 'han', 'HanXRQChr05g0135041' => 'han', 'HanXRQChr05g0140021' => 'han', 'HanXRQChr06g0178981' => 'han', 'HanXRQChr07g0188251' => 'han', 'HanXRQChr08g0235311' => 'han', 'HanXRQChr09g0271011' => 'han', 'HanXRQChr10g0293321' => 'han', 'HanXRQChr13g0388171' => 'han', 'Haze_00916' => 'cav', 'Haze_05063' => 'cav', 'Haze_20814' => 'cav', 'Haze_24128' => 'cav', 'Hma1.2p1_0745F.1_g212010' => 'hma', 'Hma1.2p1_0757F.1_g213260' => 'hma', 'Hma1.2p1_0936F.1_g238840' => 'hma', 'Hma1.2p1_1735F.1_g299890' => 'hma', 'Hma1.2p1_1861F.1_g305685' => 'hma', 'HPP92_003397' => 'vpl', 'HPP92_012597' => 'vpl', 'HPP92_015520' => 'vpl', 'HPP92_015539' => 'vpl', 'HPP92_020373' => 'vpl', 'Hund04938' => 'sun', 'Hund10677' => 'sun', 'Hund11033' => 'sun', 'Hund12155' => 'sun', 'Lalb_Chr01g0022551' => 'lal', 'Lalb_Chr03g0042341' => 'lal', 'Lalb_Chr07g0192931' => 'lal', 'Lalb_Chr12g0209551' => 'lal', 'Lalb_Chr19g0125251' => 'lal', 'Lalb_Chr19g0137891' => 'lal', 'Lalb_Chr21g0304641' => 'lal', 'Lalb_Chr21g0309881' => 'lal', 'Lj1A5T12' => 'lonja', 'Lj1C148G10' => 'lonja', 'Lj2A93T83' => 'lonja', 'Lj3A738G68' => 'lonja', 'Lj3C966T1' => 'lonja', 'Lj3g0018958' => 'lja', 'Lj3g0021831' => 'lja', 'Lj3g0025443' => 'lja', 'Lj4g0026809' => 'lja', 'Lj5g0012558' => 'lja', 'Lj5g0021586' => 'lja', 'Lsat_1_v5_gn_5_156840' => 'lsa', 'Lsat_1_v5_gn_8_73460' => 'lsa', 'Lsat_1_v5_gn_8_73481' => 'lsa', 'Lsat_1_v5_gn_9_31601' => 'lsa', 'Lsat_1_v5_gn_9_77320' => 'lsa', 'Manes.01G171300' => 'mes', 'Manes.01G171400' => 'mes', 'Manes.01G236100' => 'mes', 'Manes.02G130500' => 'mes', 'Manes.02G130600' => 'mes', 'Manes.03G180200' => 'mes', 'Manes.05G007000' => 'mes', 'Manes.08G084400' => 'mes', 'Manes.09G092600' => 'mes', 'Manes.15G027900' => 'mes', 'MBI04_g40948_MAGBIO' => 'mbi', 'MBI14_g12123_MAGBIO' => 'mbi', 'MBI18_g28915_MAGBIO' => 'mbi', 'MCO09G053' => 'mco', 'MCO11G782' => 'mco', 'MCO15G215' => 'mco', 'MD03G1088500' => 'mdo', 'MD03G1088600' => 'mdo', 'MD04G1130800' => 'mdo', 'MD09G1291700' => 'mdo', 'MD11G1097500' => 'mdo', 'MD11G1097600' => 'mdo', 'MD12G1143900' => 'mdo', 'MD13G1191400' => 'mdo', 'MD16G1191500' => 'mdo', 'Medtr1g085570' => 'mtr', 'Medtr1g104610' => 'mtr', 'Medtr2g097520' => 'mtr', 'Medtr4g021800' => 'mtr', 'Medtr4g021825' => 'mtr', 'Medtr4g064270' => 'mtr', 'Medtr4g064380' => 'mtr', 'Medtr7g062150' => 'mtr', 'MELO3C003138.2' => 'cme', 'MELO3C005187.2' => 'cme', 'MELO3C009252.2' => 'cme', 'MELO3C014481.2' => 'cme', 'MELO3C020616.2' => 'cme', 'MELO3C020617.2' => 'cme', 'MELO3C020618.2' => 'cme', 'Migut.G00328' => 'egut', 'Migut.J00320' => 'egut', 'Migut.L01000' => 'egut', 'Migut.L01953' => 'egut', 'MSTRG.10253' => 'ama', 'MSTRG.19077' => 'ama', 'MSTRG.26780' => 'ama', 'MSTRG.4023' => 'ama', 'MSTRG.5655' => 'ama', 'MSTRG.9992' => 'ama', 'Nitab4.5_0000043g0310' => 'nta', 'Nitab4.5_0000463g0080' => 'nta', 'Nitab4.5_0000705g0170' => 'nta', 'Nitab4.5_0001326g0060' => 'nta', 'Nitab4.5_0001628g0030' => 'nta', 'Nitab4.5_0002103g0110' => 'nta', 'Nitab4.5_0002946g0030' => 'nta', 'Nitab4.5_0004639g0030' => 'nta', 'Nn2g11149' => 'nnu', 'Nn2g13389' => 'nnu', 'Nn4g25326' => 'nnu', 'Nn4g26290' => 'nnu', 'Nn5g29865' => 'nnu', 'Oeu004163.1' => 'oeu', 'Oeu006901.1' => 'oeu', 'Oeu010096.1' => 'oeu', 'Oeu024340.1' => 'oeu', 'Oeu048369.1' => 'oeu', 'Os01g0973000' => 'osa', 'Os03g0273800' => 'osa', 'Os03g0701200' => 'osa', 'Os03g0834050' => 'osa', 'Os07g0634400' => 'osa', 'Peaxi162Scf00092g01414' => 'pax', 'Peaxi162Scf00165g00818' => 'pax', 'Peaxi162Scf00309g00516' => 'pax', 'Peaxi162Scf00774g00218' => 'pax', 'PGR004G1824' => 'pgr', 'PGR004G2606' => 'pgr', 'PGR031G2716' => 'pgr', 'PGR102G2460' => 'pgr', 'PGR142G2599' => 'pgr', 'PGSC0003DMG400000843' => 'stu', 'PGSC0003DMG400008829' => 'stu', 'PGSC0003DMG400030418' => 'stu', 'PGSC0003DMG400031834' => 'stu', 'PGSC0003DMG401028300' => 'stu', 'PGSC0003DMG402028300' => 'stu', 'Phvul.001G219300' => 'pvu', 'Phvul.007G056000' => 'pvu', 'Phvul.007G208000' => 'pvu', 'Phvul.008G119500' => 'pvu', 'Phvul.010G011200' => 'pvu', 'Phvul.010G014800' => 'pvu', 'Phvul.011G062900' => 'pvu', 'Phvul.L007043' => 'pvu', 'Potri.001G242300' => 'ptr', 'Potri.002G185300' => 'ptr', 'Potri.006G086900' => 'ptr', 'Potri.008G151700' => 'ptr', 'Potri.009G033500' => 'ptr', 'Potri.010G089300' => 'ptr', 'Potri.014G110800' => 'ptr', 'Pp3c27_8130' => 'ppa', 'Pp3c6_27410' => 'ppa', 'PRCOL_00001659' => 'pco', 'PRCOL_00001927' => 'pco', 'PRCOL_00003649' => 'pco', 'Prupe.1G011600' => 'ppe', 'Prupe.3G000800' => 'ppe', 'Prupe.3G001100' => 'ppe', 'Prupe.6G072700' => 'ppe', 'Prupe.6G072800' => 'ppe', 'Prupe.6G257300' => 'ppe', 'Prupe.8G033000' => 'ppe', 'Psat0s2633g0080' => 'psa', 'Psat0s3396g0080' => 'psa', 'Psat0s3396g0200' => 'psa', 'Psat3g139080' => 'psa', 'Psat5g285080' => 'psa', 'Psat6g157760' => 'psa', 'Psat6g208440' => 'psa', 'Psat7g215320' => 'psa', 'Psat7g215400' => 'psa', 'Psat7g235600' => 'psa', 'Psat7g235760' => 'psa', 'PSO063G4603' => 'pso', 'PSO210G0182' => 'pso', 'PSO210G0196' => 'pso', 'PSO339G0394' => 'pso', 'PSO339G4127' => 'pso', 'PSO513G0064' => 'pso', 'PSO761G0079' => 'pso', 'QL01p031003' => 'qlo', 'QL01p031078' => 'qlo', 'QL06p003004' => 'qlo', 'QL07p048731' => 'qlo', 'QL09p037427' => 'qlo', 'RcHm_v2.0_Chr3g0466361' => 'rch', 'RcHm_v2.0_Chr3g0485571' => 'rch', 'RcHm_v2.0_Chr4g0416551' => 'rch', 'RcHm_v2.0_Chr5g0065831' => 'rch', 'Rhsim01G0230500' => 'rsi', 'Rhsim05G0194000' => 'rsi', 'Rhsim08G0250400' => 'rsi', 'Sabra02G0131000' => 'sbr', 'Sabra06G0066300' => 'sbr', 'Sabra08G0115500' => 'sbr', 'Sabra09G0023900' => 'sbr', 'Sabra10G0054000' => 'sbr', 'Sabra14G0081500' => 'sbr', 'Sabra16G0147100' => 'sbr', 'SalBow2G2957' => 'sbo', 'SalBow4G3320' => 'sbo', 'SalBow8G1894' => 'sbo', 'Sc07g0007950' => 'sci', 'Sc12g0001360' => 'sci', 'Sc13g0004330' => 'sci', 'Sc20g0005010' => 'sci', 'Sed0000361' => 'sed', 'Sed0001706' => 'sed', 'Sed0002422' => 'sed', 'Sed0004029' => 'sed', 'Sed0004602' => 'sed', 'Sed0004943' => 'sed', 'Sed0008646' => 'sed', 'Sed0023313' => 'sed', 'Sed0024843' => 'sed', 'SEGI_00081' => 'sgi', 'SEGI_00947' => 'sgi', 'SEGI_04046' => 'sgi', 'SEGI_06880' => 'sgi', 'SEGI_09736' => 'sgi', 'SEGI_12741' => 'sgi', 'SEGI_14530' => 'sgi', 'SEGI_20705' => 'sgi', 'SEGI_26088' => 'sgi', 'SEGI_28323' => 'sgi', 'SEGI_33343' => 'sgi', 'SGA_v2.0_scaffold126G33775' => 'sas', 'SGA_v2.0_scaffold2G01337' => 'sas', 'SGA_v2.0_scaffold38G15006' => 'sas', 'SGA_v2.0_scaffold39G15264' => 'sas', 'SGA_v2.0_scaffold453G51880' => 'sas', 'SHI12696' => 'shi', 'SMO367G1096' => 'smo', 'Solyc01g068630.3' => 'sly', 'Solyc05g011880.3' => 'sly', 'Solyc06g076300.3' => 'sly', 'Solyc09g010940.4' => 'sly', 'Solyc09g075890.3' => 'sly', 'Sopen01g030560' => 'spe', 'Sopen05g006630' => 'spe', 'Sopen06g032720' => 'spe', 'Sopen09g005660' => 'spe', 'Sopen09g030690' => 'spe', 'Sp4g14540' => 'spa', 'Sp4g20030' => 'spa', 'Sp5g01320' => 'spa', 'Sp6g21170' => 'spa', 'Sp6g21180' => 'spa', 'Sp6g21190' => 'spa', 'Sp6g40220' => 'spa', 'TAR362G0122' => 'tar', 'TAR362G1338' => 'tar', 'TAR369G0590' => 'tar', 'TAR371G0824' => 'tar', 'TAR622G1429' => 'tar', 'TAR623G0734' => 'tar', 'TAR625G0441' => 'tar', 'TAR629G0976' => 'tar', 'TAR633G1195' => 'tar', 'TAR636G2660' => 'tar', 'THA.LOC104799440' => 'tha', 'THA.LOC104800966' => 'tha', 'THA.LOC104806559' => 'tha', 'THA.LOC104810765' => 'tha', 'THA.LOC104816266' => 'tha', 'THA.LOC104817419' => 'tha', 'THA.LOC104827021' => 'tha', 'Thecc.01G327400' => 'tca', 'Thecc.04G229200' => 'tca', 'Thecc.05G037400' => 'tca', 'Thecc.09G318600' => 'tca', 'Thecc.09G318700' => 'tca', 'Thhalv10006238m.g' => 'esa', 'Thhalv10014321m.g' => 'esa', 'Thhalv10014335m.g' => 'esa', 'Thhalv10015826m.g' => 'esa', 'Thhalv10017107m.g' => 'esa', 'Thhalv10017180m.g' => 'esa', 'Thhalv10029339m.g' => 'esa', 'TPR.G1699' => 'tpr', 'TPR.G23609' => 'tpr', 'TPR.G3081' => 'tpr', 'TPR.G40397' => 'tpr', 'TPR.G5522' => 'tpr', 'TPR.G5618' => 'tpr', 'TPR.G5626' => 'tpr', 'TWI09G1632' => 'twi', 'TWI23G1230' => 'twi', 'TWI53G1064' => 'twi', 'TWI59G0751' => 'twi', 'TWI74G0947' => 'twi', 'TWI77G0337' => 'twi', 'TWI79G1254' => 'twi', 'unitig_0.g2341' => 'ugi', 'unitig_26.g10006' => 'ugi', 'unitig_26.g10008' => 'ugi', 'unitig_26.g9192' => 'ugi', 'vmacro14547' => 'vma', 'vmacro15333' => 'vma', 'vmacro18743' => 'vma', 'vmacro20166' => 'vma', 'VMungo0331G0523' => 'vmu', 'VMungo0331G1202' => 'vmu', 'VMungo0720G1228' => 'vmu', 'VMungo0720G1514' => 'vmu', 'VMungo1080G0169' => 'vmu', 'VMungo1127G1475' => 'vmu', 'VMungo1383G1208' => 'vmu', 'VMungo1383G1698' => 'vmu', 'Zm00001eb012270' => 'zma', 'Zm00001eb054100' => 'zma', 'Zm00001eb063350' => 'zma', 'Zm00001eb328560' => 'zma', 'Zm00001eb342820' => 'zma', 'Zm00001eb362210' => 'zma', 'Zm00001eb397730' => 'zma', 'Zm00001eb399750' => 'zma' ) $gf_id = 'HOM05D000959' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000959' ) $data_identifier = 'HOM05D000959' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 5, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 5, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 10, 'mbi' => (int) 3, 'mco' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 2, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 3, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 11, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399750' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000959', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '622', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p07100' => 'bna', 'A03p11720' => 'bna', 'A05p08300' => 'bna', 'A05p13380' => 'bna', 'A09p54130' => 'bna', 'A10p16690' => 'bna', 'A10p16700' => 'bna', 'A10p33390' => 'bna', 'Aa31LG10G16020' => 'aar', 'Aa31LG1G11810' => 'aar', 'Aa31LG1G11830' => 'aar', 'Aa31LG1G22510' => 'aar', 'Aa31LG5G4890' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5793' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2310' => 'aag', 'Actinidia08499' => 'ach', 'Actinidia11262' => 'ach', 'Actinidia23926' => 'ach', 'Actinidia34420' => 'ach', 'Actinidia36970' => 'ach', 'Ah.02g111220' => 'amhyb', 'Ah.15g097750' => 'amhyb', 'AL4G27500' => 'aly', 'AL6G11470' => 'aly', 'AL8G35950' => 'aly', 'AL8G35960' => 'aly', 'AL8G35970' => 'aly', 'Aqoxy1G00912' => 'aox', 'Aqoxy2G02253' => 'aox', 'Aqoxy2G02411' => 'aox', 'Aqoxy5G00485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BZ66YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K8ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM4FUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6BF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HFV7XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25JBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0YNNV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MAKK6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P70IT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP2Z6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V61LZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YWP64R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3S9AI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7PGHH' => 'arhy', 'AT2G32150' => 'ath', 'AT3G62040' => 'ath', 'AT5G02230' => 'ath', 'AT5G59480' => 'ath', 'AT5G59490' => 'ath', 'ATR0332G060' => 'atr', 'ATR0559G190' => 'atr', 'ATR0693G294' => 'atr', 'Atru.chr3.3975' => 'acertr', 'Atru.chr3.3976' => 'acertr', 'Atru.chr3.3977' => 'acertr', 'Atru.chr4.2498' => 'acertr', 'Atru.chr5.838' => 'acertr', 'Atru.chr8.1990' => 'acertr', 'Atru.chr8.1991' => 'acertr', 'Atru.chr8.1992' => 'acertr', 'AUR62001759' => 'cqu', 'AUR62009545' => 'cqu', 'AUR62010474' => 'cqu', 'AUR62025820' => 'cqu', 'AUR62030422' => 'cqu', 'AUR62033605' => 'cqu', 'AUR62038615' => 'cqu', 'AUR62041347' => 'cqu', 'BcaB01g04574' => 'bca', 'BcaB02g09263' => 'bca', 'BcaB02g10453' => 'bca', 'BcaB05g22513' => 'bca', 'BcaB08g36253' => 'bca', 'BcaB08g36254' => 'bca', 'BcaC01g06519' => 'bca', 'BcaC02g11889' => 'bca', 'BcaC03g14010' => 'bca', 'BcaC03g18439' => 'bca', 'BcaC04g19765' => 'bca', 'BcaC09g48432' => 'bca', 'BcaNung07302' => 'bca', 'BolC2t06040H' => 'bol', 'BolC2t07346H' => 'bol', 'BolC3t13817H' => 'bol', 'BolC4t22625H' => 'bol', 'BolC4t23297H' => 'bol', 'BolC8t51278H' => 'bol', 'BolC9t58050H' => 'bol', 'BolC9t58051H' => 'bol', 'BolC9t60163H' => 'bol', 'BraA02t04712Z' => 'bra', 'BraA02t05791Z' => 'bra', 'BraA03t10483Z' => 'bra', 'BraA05t19795Z' => 'bra', 'BraA05t20276Z' => 'bra', 'BraA09t40827Z' => 'bra', 'BraA10t43750Z' => 'bra', 'BraA10t43751Z' => 'bra', 'BraA10t45370Z' => 'bra', 'C02p00400' => 'bna', 'C02p12460' => 'bna', 'C03p13680' => 'bna', 'C04p10270' => 'bna', 'C04p17500' => 'bna', 'C08p37010' => 'bna', 'C09p51880' => 'bna', 'C09p51890' => 'bna', 'C09p74300' => 'bna', 'CAN.G179.26' => 'can', 'CAN.G3384.1' => 'can', 'CAN.G394.68' => 'can', 'CAN.G907.13' => 'can', 'CANSAT11G0012' => 'cansat', 'CANSAT25G1586' => 'cansat', 'CANSAT35G0735' => 'cansat', 'CANSAT54G0556' => 'cansat', 'CANSAT64G0356' => 'cansat', 'CANSAT78G2042' => 'cansat', 'CARHR125920' => 'chi', 'CARHR131910' => 'chi', 'CARHR172390' => 'chi', 'CARHR211140' => 'chi', 'CARHR285850' => 'chi', 'CARHR285860' => 'chi', 'Carub.0004s1347' => 'cru', 'Carub.0004s1960' => 'cru', 'Carub.0005s2880' => 'cru', 'Carub.0006s0107' => 'cru', 'Carub.0008s2015' => 'cru', 'Carub.0008s2016' => 'cru', 'Carub.0008s2017' => 'cru', 'Ca_01315_v3' => 'car', 'Ca_05063_v3' => 'car', 'Ca_10231_v3' => 'car', 'Ca_10913_v3' => 'car', 'Ca_19156_v3' => 'car', 'Ca_23644_v3' => 'car', 'Ca_26735_v3' => 'car', 'Cc01_g13130' => 'ccan', 'Cc02_g21690' => 'ccan', 'Cc03_g03600' => 'ccan', 'Cc06_g02510' => 'ccan', 'CDE02G1265' => 'cde', 'CDE05G0415' => 'cde', 'CDE08G1082' => 'cde', 'Cfa005780' => 'cfa', 'Cfa011522' => 'cfa', 'Cfa011523' => 'cfa', 'Cfa015627' => 'cfa', 'Cfa017359' => 'cfa', 'Ciclev10005687m.g' => 'ccl', 'Ciclev10012173m.g' => 'ccl', 'Ciclev10021621m.g' => 'ccl', 'Ciclev10028968m.g' => 'ccl', 'Ciclev10029907m.g' => 'ccl', 'CiPaw.01G164800' => 'cil', 'CiPaw.07G083700' => 'cil', 'CiPaw.07G127000' => 'cil', 'CiPaw.07G136900' => 'cil', 'CiPaw.08G081700' => 'cil', 'CiPaw.09G194600' => 'cil', 'CiPaw.10G146500' => 'cil', 'CiPaw.13G091500' => 'cil', 'CiPaw.13G091600' => 'cil', 'ClCG00G003390' => 'cla', 'ClCG01G007220' => 'cla', 'ClCG03G001370' => 'cla', 'ClCG04G008100' => 'cla', 'ClCG06G006110' => 'cla', 'ClCG06G006130' => 'cla', 'ClCG10G021210' => 'cla', 'COL.COLO4_07648' => 'col', 'COL.COLO4_07650' => 'col', 'COL.COLO4_07651' => 'col', 'COL.COLO4_14780' => 'col', 'COL.COLO4_18546' => 'col', 'COL.COLO4_18547' => 'col', 'COL.COLO4_23103' => 'col', 'COL.COLO4_30419' => 'col', 'COL.COLO4_34232' => 'col', 'Cpa.g.sc169.20' => 'cpa', 'Cpa.g.sc57.45' => 'cpa', 'Cpa.g.sc58.124' => 'cpa', 'Cpa.g.sc58.125' => 'cpa', 'Cpa.g.sc81.118' => 'cpa', 'Cpa.g.sc81.119' => 'cpa', 'Cre12.g524700' => 'cre', 'CsaV3_1G034430' => 'csa', 'CsaV3_1G034440' => 'csa', 'CsaV3_1G034450' => 'csa', 'CsaV3_3G034830' => 'csa', 'CsaV3_4G025090' => 'csa', 'CsaV3_5G018660' => 'csa', 'CsaV3_6G038160' => 'csa', 'CSS0003447' => 'camsi', 'CSS0017840' => 'camsi', 'CSS0019260' => 'camsi', 'CSS0040375' => 'camsi', 'CSS0042533' => 'camsi', 'DCAR_005960' => 'dca', 'DCAR_012104' => 'dca', 'DCAR_012105' => 'dca', 'DCAR_012293' => 'dca', 'DCAR_015632' => 'dca', 'DCAR_024602' => 'dca', 'DCAR_028752' => 'dca', 'Dinv06261' => 'din', 'Dinv13982' => 'din', 'Dinv17029' => 'din', 'Dinv18463' => 'din', 'Dinv33181' => 'din', 'Dinv35585' => 'din', 'Dinv37161' => 'din', 'Dinv42977' => 'din', 'Dinv43122' => 'din', 'Dinv44517' => 'din', 'Duzib093G0256' => 'dzi', 'Duzib106G1254' => 'dzi', 'Duzib128G1789' => 'dzi', 'Duzib133G0633' => 'dzi', 'Duzib138G0510' => 'dzi', 'Duzib150G1084' => 'dzi', 'Duzib168G0488' => 'dzi', 'Duzib168G1523' => 'dzi', 'Duzib170G0133' => 'dzi', 'ECA234G1433' => 'eca', 'ECA236G1432' => 'eca', 'ECA236G2256' => 'eca', 'ECA236G2365' => 'eca', 'ECA236G4830' => 'eca', 'ECA248G1505' => 'eca', 'EL10Ac3g06431' => 'bvu', 'EL10Ac5g12577' => 'bvu', 'EL10Ac6g13533' => 'bvu', 'EL10Ac7g16045' => 'bvu', 'Eucgr.A01281' => 'egr', 'Eucgr.B02326' => 'egr', 'Eucgr.H03532' => 'egr', 'Eucgr.K00553' => 'egr', 'Eucgr.K03116' => 'egr', 'FAN02G3963' => 'fan', 'FAN05G0438' => 'fan', 'FAN09G2434' => 'fan', 'FAN12G3984' => 'fan', 'FAN14G0798' => 'fan', 'FAN17G0652' => 'fan', 'FAN19G1988' => 'fan', 'FAN22G0632' => 'fan', 'FAN23G0387' => 'fan', 'FAN26G1323' => 'fan', 'FAN28G0666' => 'fan', 'FvH4_1g26080' => 'fve', 'FvH4_3g36780' => 'fve', 'FvH4_4g15270' => 'fve', 'FvH4_6g13490' => 'fve', 'Glyma.01G098700' => 'gma', 'Glyma.03G065900' => 'gma', 'Glyma.03G073754' => 'gma', 'Glyma.03G073758' => 'gma', 'Glyma.03G083200' => 'gma', 'Glyma.03G225500' => 'gma', 'Glyma.05G037766' => 'gma', 'Glyma.07G133500' => 'gma', 'Glyma.10G139400' => 'gma', 'Glyma.10G248900' => 'gma', 'Glyma.11G137800' => 'gma', 'Glyma.12G061300' => 'gma', 'Glyma.13G337900' => 'gma', 'Glyma.15G036600' => 'gma', 'Glyma.18G182800' => 'gma', 'Glyma.19G222500' => 'gma', 'Glyma.20G144800' => 'gma', 'Gohir.A01G222000' => 'ghi', 'Gohir.A03G044000' => 'ghi', 'Gohir.A03G044100' => 'ghi', 'Gohir.A04G083100' => 'ghi', 'Gohir.A07G127200' => 'ghi', 'Gohir.A07G132400' => 'ghi', 'Gohir.A08G000700' => 'ghi', 'Gohir.A11G327300' => 'ghi', 'Gohir.D01G211500' => 'ghi', 'Gohir.D03G123400' => 'ghi', 'Gohir.D03G123500' => 'ghi', 'Gohir.D04G121800' => 'ghi', 'Gohir.D07G131500' => 'ghi', 'Gohir.D07G136600' => 'ghi', 'Gohir.D08G011600' => 'ghi', 'Gohir.D11G346200' => 'ghi', 'Gorai.001G142800' => 'gra', 'Gorai.001G148700' => 'gra', 'Gorai.002G257300' => 'gra', 'Gorai.003G130000' => 'gra', 'Gorai.003G130100' => 'gra', 'Gorai.004G005300' => 'gra', 'Gorai.007G376500' => 'gra', 'Gorai.012G104700' => 'gra', 'GSVIVG01017946001' => 'vvi', 'GSVIVG01024928001' => 'vvi', 'GSVIVG01028227001' => 'vvi', 'GSVIVG01034151001' => 'vvi', 'HanXRQChr05g0135031' => 'han', 'HanXRQChr05g0135041' => 'han', 'HanXRQChr05g0140021' => 'han', 'HanXRQChr06g0178981' => 'han', 'HanXRQChr07g0188251' => 'han', 'HanXRQChr08g0235311' => 'han', 'HanXRQChr09g0271011' => 'han', 'HanXRQChr10g0293321' => 'han', 'HanXRQChr13g0388171' => 'han', 'Haze_00916' => 'cav', 'Haze_05063' => 'cav', 'Haze_20814' => 'cav', 'Haze_24128' => 'cav', 'Hma1.2p1_0745F.1_g212010' => 'hma', 'Hma1.2p1_0757F.1_g213260' => 'hma', 'Hma1.2p1_0936F.1_g238840' => 'hma', 'Hma1.2p1_1735F.1_g299890' => 'hma', 'Hma1.2p1_1861F.1_g305685' => 'hma', 'HPP92_003397' => 'vpl', 'HPP92_012597' => 'vpl', 'HPP92_015520' => 'vpl', 'HPP92_015539' => 'vpl', 'HPP92_020373' => 'vpl', 'Hund04938' => 'sun', 'Hund10677' => 'sun', 'Hund11033' => 'sun', 'Hund12155' => 'sun', 'Lalb_Chr01g0022551' => 'lal', 'Lalb_Chr03g0042341' => 'lal', 'Lalb_Chr07g0192931' => 'lal', 'Lalb_Chr12g0209551' => 'lal', 'Lalb_Chr19g0125251' => 'lal', 'Lalb_Chr19g0137891' => 'lal', 'Lalb_Chr21g0304641' => 'lal', 'Lalb_Chr21g0309881' => 'lal', 'Lj1A5T12' => 'lonja', 'Lj1C148G10' => 'lonja', 'Lj2A93T83' => 'lonja', 'Lj3A738G68' => 'lonja', 'Lj3C966T1' => 'lonja', 'Lj3g0018958' => 'lja', 'Lj3g0021831' => 'lja', 'Lj3g0025443' => 'lja', 'Lj4g0026809' => 'lja', 'Lj5g0012558' => 'lja', 'Lj5g0021586' => 'lja', 'Lsat_1_v5_gn_5_156840' => 'lsa', 'Lsat_1_v5_gn_8_73460' => 'lsa', 'Lsat_1_v5_gn_8_73481' => 'lsa', 'Lsat_1_v5_gn_9_31601' => 'lsa', 'Lsat_1_v5_gn_9_77320' => 'lsa', 'Manes.01G171300' => 'mes', 'Manes.01G171400' => 'mes', 'Manes.01G236100' => 'mes', 'Manes.02G130500' => 'mes', 'Manes.02G130600' => 'mes', 'Manes.03G180200' => 'mes', 'Manes.05G007000' => 'mes', 'Manes.08G084400' => 'mes', 'Manes.09G092600' => 'mes', 'Manes.15G027900' => 'mes', 'MBI04_g40948_MAGBIO' => 'mbi', 'MBI14_g12123_MAGBIO' => 'mbi', 'MBI18_g28915_MAGBIO' => 'mbi', 'MCO09G053' => 'mco', 'MCO11G782' => 'mco', 'MCO15G215' => 'mco', 'MD03G1088500' => 'mdo', 'MD03G1088600' => 'mdo', 'MD04G1130800' => 'mdo', 'MD09G1291700' => 'mdo', 'MD11G1097500' => 'mdo', 'MD11G1097600' => 'mdo', 'MD12G1143900' => 'mdo', 'MD13G1191400' => 'mdo', 'MD16G1191500' => 'mdo', 'Medtr1g085570' => 'mtr', 'Medtr1g104610' => 'mtr', 'Medtr2g097520' => 'mtr', 'Medtr4g021800' => 'mtr', 'Medtr4g021825' => 'mtr', 'Medtr4g064270' => 'mtr', 'Medtr4g064380' => 'mtr', 'Medtr7g062150' => 'mtr', 'MELO3C003138.2' => 'cme', 'MELO3C005187.2' => 'cme', 'MELO3C009252.2' => 'cme', 'MELO3C014481.2' => 'cme', 'MELO3C020616.2' => 'cme', 'MELO3C020617.2' => 'cme', 'MELO3C020618.2' => 'cme', 'Migut.G00328' => 'egut', 'Migut.J00320' => 'egut', 'Migut.L01000' => 'egut', 'Migut.L01953' => 'egut', 'MSTRG.10253' => 'ama', 'MSTRG.19077' => 'ama', 'MSTRG.26780' => 'ama', 'MSTRG.4023' => 'ama', 'MSTRG.5655' => 'ama', 'MSTRG.9992' => 'ama', 'Nitab4.5_0000043g0310' => 'nta', 'Nitab4.5_0000463g0080' => 'nta', 'Nitab4.5_0000705g0170' => 'nta', 'Nitab4.5_0001326g0060' => 'nta', 'Nitab4.5_0001628g0030' => 'nta', 'Nitab4.5_0002103g0110' => 'nta', 'Nitab4.5_0002946g0030' => 'nta', 'Nitab4.5_0004639g0030' => 'nta', 'Nn2g11149' => 'nnu', 'Nn2g13389' => 'nnu', 'Nn4g25326' => 'nnu', 'Nn4g26290' => 'nnu', 'Nn5g29865' => 'nnu', 'Oeu004163.1' => 'oeu', 'Oeu006901.1' => 'oeu', 'Oeu010096.1' => 'oeu', 'Oeu024340.1' => 'oeu', 'Oeu048369.1' => 'oeu', 'Os01g0973000' => 'osa', 'Os03g0273800' => 'osa', 'Os03g0701200' => 'osa', 'Os03g0834050' => 'osa', 'Os07g0634400' => 'osa', 'Peaxi162Scf00092g01414' => 'pax', 'Peaxi162Scf00165g00818' => 'pax', 'Peaxi162Scf00309g00516' => 'pax', 'Peaxi162Scf00774g00218' => 'pax', 'PGR004G1824' => 'pgr', 'PGR004G2606' => 'pgr', 'PGR031G2716' => 'pgr', 'PGR102G2460' => 'pgr', 'PGR142G2599' => 'pgr', 'PGSC0003DMG400000843' => 'stu', 'PGSC0003DMG400008829' => 'stu', 'PGSC0003DMG400030418' => 'stu', 'PGSC0003DMG400031834' => 'stu', 'PGSC0003DMG401028300' => 'stu', 'PGSC0003DMG402028300' => 'stu', 'Phvul.001G219300' => 'pvu', 'Phvul.007G056000' => 'pvu', 'Phvul.007G208000' => 'pvu', 'Phvul.008G119500' => 'pvu', 'Phvul.010G011200' => 'pvu', 'Phvul.010G014800' => 'pvu', 'Phvul.011G062900' => 'pvu', 'Phvul.L007043' => 'pvu', 'Potri.001G242300' => 'ptr', 'Potri.002G185300' => 'ptr', 'Potri.006G086900' => 'ptr', 'Potri.008G151700' => 'ptr', 'Potri.009G033500' => 'ptr', 'Potri.010G089300' => 'ptr', 'Potri.014G110800' => 'ptr', 'Pp3c27_8130' => 'ppa', 'Pp3c6_27410' => 'ppa', 'PRCOL_00001659' => 'pco', 'PRCOL_00001927' => 'pco', 'PRCOL_00003649' => 'pco', 'Prupe.1G011600' => 'ppe', 'Prupe.3G000800' => 'ppe', 'Prupe.3G001100' => 'ppe', 'Prupe.6G072700' => 'ppe', 'Prupe.6G072800' => 'ppe', 'Prupe.6G257300' => 'ppe', 'Prupe.8G033000' => 'ppe', 'Psat0s2633g0080' => 'psa', 'Psat0s3396g0080' => 'psa', 'Psat0s3396g0200' => 'psa', 'Psat3g139080' => 'psa', 'Psat5g285080' => 'psa', 'Psat6g157760' => 'psa', 'Psat6g208440' => 'psa', 'Psat7g215320' => 'psa', 'Psat7g215400' => 'psa', 'Psat7g235600' => 'psa', 'Psat7g235760' => 'psa', 'PSO063G4603' => 'pso', 'PSO210G0182' => 'pso', 'PSO210G0196' => 'pso', 'PSO339G0394' => 'pso', 'PSO339G4127' => 'pso', 'PSO513G0064' => 'pso', 'PSO761G0079' => 'pso', 'QL01p031003' => 'qlo', 'QL01p031078' => 'qlo', 'QL06p003004' => 'qlo', 'QL07p048731' => 'qlo', 'QL09p037427' => 'qlo', 'RcHm_v2.0_Chr3g0466361' => 'rch', 'RcHm_v2.0_Chr3g0485571' => 'rch', 'RcHm_v2.0_Chr4g0416551' => 'rch', 'RcHm_v2.0_Chr5g0065831' => 'rch', 'Rhsim01G0230500' => 'rsi', 'Rhsim05G0194000' => 'rsi', 'Rhsim08G0250400' => 'rsi', 'Sabra02G0131000' => 'sbr', 'Sabra06G0066300' => 'sbr', 'Sabra08G0115500' => 'sbr', 'Sabra09G0023900' => 'sbr', 'Sabra10G0054000' => 'sbr', 'Sabra14G0081500' => 'sbr', 'Sabra16G0147100' => 'sbr', 'SalBow2G2957' => 'sbo', 'SalBow4G3320' => 'sbo', 'SalBow8G1894' => 'sbo', 'Sc07g0007950' => 'sci', 'Sc12g0001360' => 'sci', 'Sc13g0004330' => 'sci', 'Sc20g0005010' => 'sci', 'Sed0000361' => 'sed', 'Sed0001706' => 'sed', 'Sed0002422' => 'sed', 'Sed0004029' => 'sed', 'Sed0004602' => 'sed', 'Sed0004943' => 'sed', 'Sed0008646' => 'sed', 'Sed0023313' => 'sed', 'Sed0024843' => 'sed', 'SEGI_00081' => 'sgi', 'SEGI_00947' => 'sgi', 'SEGI_04046' => 'sgi', 'SEGI_06880' => 'sgi', 'SEGI_09736' => 'sgi', 'SEGI_12741' => 'sgi', 'SEGI_14530' => 'sgi', 'SEGI_20705' => 'sgi', 'SEGI_26088' => 'sgi', 'SEGI_28323' => 'sgi', 'SEGI_33343' => 'sgi', 'SGA_v2.0_scaffold126G33775' => 'sas', 'SGA_v2.0_scaffold2G01337' => 'sas', 'SGA_v2.0_scaffold38G15006' => 'sas', 'SGA_v2.0_scaffold39G15264' => 'sas', 'SGA_v2.0_scaffold453G51880' => 'sas', 'SHI12696' => 'shi', 'SMO367G1096' => 'smo', 'Solyc01g068630.3' => 'sly', 'Solyc05g011880.3' => 'sly', 'Solyc06g076300.3' => 'sly', 'Solyc09g010940.4' => 'sly', 'Solyc09g075890.3' => 'sly', 'Sopen01g030560' => 'spe', 'Sopen05g006630' => 'spe', 'Sopen06g032720' => 'spe', 'Sopen09g005660' => 'spe', 'Sopen09g030690' => 'spe', 'Sp4g14540' => 'spa', 'Sp4g20030' => 'spa', 'Sp5g01320' => 'spa', 'Sp6g21170' => 'spa', 'Sp6g21180' => 'spa', 'Sp6g21190' => 'spa', 'Sp6g40220' => 'spa', 'TAR362G0122' => 'tar', 'TAR362G1338' => 'tar', 'TAR369G0590' => 'tar', 'TAR371G0824' => 'tar', 'TAR622G1429' => 'tar', 'TAR623G0734' => 'tar', 'TAR625G0441' => 'tar', 'TAR629G0976' => 'tar', 'TAR633G1195' => 'tar', 'TAR636G2660' => 'tar', 'THA.LOC104799440' => 'tha', 'THA.LOC104800966' => 'tha', 'THA.LOC104806559' => 'tha', 'THA.LOC104810765' => 'tha', 'THA.LOC104816266' => 'tha', 'THA.LOC104817419' => 'tha', 'THA.LOC104827021' => 'tha', 'Thecc.01G327400' => 'tca', 'Thecc.04G229200' => 'tca', 'Thecc.05G037400' => 'tca', 'Thecc.09G318600' => 'tca', 'Thecc.09G318700' => 'tca', 'Thhalv10006238m.g' => 'esa', 'Thhalv10014321m.g' => 'esa', 'Thhalv10014335m.g' => 'esa', 'Thhalv10015826m.g' => 'esa', 'Thhalv10017107m.g' => 'esa', 'Thhalv10017180m.g' => 'esa', 'Thhalv10029339m.g' => 'esa', 'TPR.G1699' => 'tpr', 'TPR.G23609' => 'tpr', 'TPR.G3081' => 'tpr', 'TPR.G40397' => 'tpr', 'TPR.G5522' => 'tpr', 'TPR.G5618' => 'tpr', 'TPR.G5626' => 'tpr', 'TWI09G1632' => 'twi', 'TWI23G1230' => 'twi', 'TWI53G1064' => 'twi', 'TWI59G0751' => 'twi', 'TWI74G0947' => 'twi', 'TWI77G0337' => 'twi', 'TWI79G1254' => 'twi', 'unitig_0.g2341' => 'ugi', 'unitig_26.g10006' => 'ugi', 'unitig_26.g10008' => 'ugi', 'unitig_26.g9192' => 'ugi', 'vmacro14547' => 'vma', 'vmacro15333' => 'vma', 'vmacro18743' => 'vma', 'vmacro20166' => 'vma', 'VMungo0331G0523' => 'vmu', 'VMungo0331G1202' => 'vmu', 'VMungo0720G1228' => 'vmu', 'VMungo0720G1514' => 'vmu', 'VMungo1080G0169' => 'vmu', 'VMungo1127G1475' => 'vmu', 'VMungo1383G1208' => 'vmu', 'VMungo1383G1698' => 'vmu', 'Zm00001eb012270' => 'zma', 'Zm00001eb054100' => 'zma', 'Zm00001eb063350' => 'zma', 'Zm00001eb328560' => 'zma', 'Zm00001eb342820' => 'zma', 'Zm00001eb362210' => 'zma', 'Zm00001eb397730' => 'zma', 'Zm00001eb399750' => 'zma' ), 'gf_id' => 'HOM05D000959', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000959' ), 'data_identifier' => 'HOM05D000959', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000959', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '622', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p07100' => 'bna', 'A03p11720' => 'bna', 'A05p08300' => 'bna', 'A05p13380' => 'bna', 'A09p54130' => 'bna', 'A10p16690' => 'bna', 'A10p16700' => 'bna', 'A10p33390' => 'bna', 'Aa31LG10G16020' => 'aar', 'Aa31LG1G11810' => 'aar', 'Aa31LG1G11830' => 'aar', 'Aa31LG1G22510' => 'aar', 'Aa31LG5G4890' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5793' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2310' => 'aag', 'Actinidia08499' => 'ach', 'Actinidia11262' => 'ach', 'Actinidia23926' => 'ach', 'Actinidia34420' => 'ach', 'Actinidia36970' => 'ach', 'Ah.02g111220' => 'amhyb', 'Ah.15g097750' => 'amhyb', 'AL4G27500' => 'aly', 'AL6G11470' => 'aly', 'AL8G35950' => 'aly', 'AL8G35960' => 'aly', 'AL8G35970' => 'aly', 'Aqoxy1G00912' => 'aox', 'Aqoxy2G02253' => 'aox', 'Aqoxy2G02411' => 'aox', 'Aqoxy5G00485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BZ66YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K8ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM4FUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6BF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HFV7XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25JBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0YNNV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MAKK6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P70IT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP2Z6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V61LZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YWP64R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3S9AI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7PGHH' => 'arhy', 'AT2G32150' => 'ath', 'AT3G62040' => 'ath', 'AT5G02230' => 'ath', 'AT5G59480' => 'ath', 'AT5G59490' => 'ath', 'ATR0332G060' => 'atr', 'ATR0559G190' => 'atr', 'ATR0693G294' => 'atr', 'Atru.chr3.3975' => 'acertr', 'Atru.chr3.3976' => 'acertr', 'Atru.chr3.3977' => 'acertr', 'Atru.chr4.2498' => 'acertr', 'Atru.chr5.838' => 'acertr', 'Atru.chr8.1990' => 'acertr', 'Atru.chr8.1991' => 'acertr', 'Atru.chr8.1992' => 'acertr', 'AUR62001759' => 'cqu', 'AUR62009545' => 'cqu', 'AUR62010474' => 'cqu', 'AUR62025820' => 'cqu', 'AUR62030422' => 'cqu', 'AUR62033605' => 'cqu', 'AUR62038615' => 'cqu', 'AUR62041347' => 'cqu', 'BcaB01g04574' => 'bca', 'BcaB02g09263' => 'bca', 'BcaB02g10453' => 'bca', 'BcaB05g22513' => 'bca', 'BcaB08g36253' => 'bca', 'BcaB08g36254' => 'bca', 'BcaC01g06519' => 'bca', 'BcaC02g11889' => 'bca', 'BcaC03g14010' => 'bca', 'BcaC03g18439' => 'bca', 'BcaC04g19765' => 'bca', 'BcaC09g48432' => 'bca', 'BcaNung07302' => 'bca', 'BolC2t06040H' => 'bol', 'BolC2t07346H' => 'bol', 'BolC3t13817H' => 'bol', 'BolC4t22625H' => 'bol', 'BolC4t23297H' => 'bol', 'BolC8t51278H' => 'bol', 'BolC9t58050H' => 'bol', 'BolC9t58051H' => 'bol', 'BolC9t60163H' => 'bol', 'BraA02t04712Z' => 'bra', 'BraA02t05791Z' => 'bra', 'BraA03t10483Z' => 'bra', 'BraA05t19795Z' => 'bra', 'BraA05t20276Z' => 'bra', 'BraA09t40827Z' => 'bra', 'BraA10t43750Z' => 'bra', 'BraA10t43751Z' => 'bra', 'BraA10t45370Z' => 'bra', 'C02p00400' => 'bna', 'C02p12460' => 'bna', 'C03p13680' => 'bna', 'C04p10270' => 'bna', 'C04p17500' => 'bna', 'C08p37010' => 'bna', 'C09p51880' => 'bna', 'C09p51890' => 'bna', 'C09p74300' => 'bna', 'CAN.G179.26' => 'can', 'CAN.G3384.1' => 'can', 'CAN.G394.68' => 'can', 'CAN.G907.13' => 'can', 'CANSAT11G0012' => 'cansat', 'CANSAT25G1586' => 'cansat', 'CANSAT35G0735' => 'cansat', 'CANSAT54G0556' => 'cansat', 'CANSAT64G0356' => 'cansat', 'CANSAT78G2042' => 'cansat', 'CARHR125920' => 'chi', 'CARHR131910' => 'chi', 'CARHR172390' => 'chi', 'CARHR211140' => 'chi', 'CARHR285850' => 'chi', 'CARHR285860' => 'chi', 'Carub.0004s1347' => 'cru', 'Carub.0004s1960' => 'cru', 'Carub.0005s2880' => 'cru', 'Carub.0006s0107' => 'cru', 'Carub.0008s2015' => 'cru', 'Carub.0008s2016' => 'cru', 'Carub.0008s2017' => 'cru', 'Ca_01315_v3' => 'car', 'Ca_05063_v3' => 'car', 'Ca_10231_v3' => 'car', 'Ca_10913_v3' => 'car', 'Ca_19156_v3' => 'car', 'Ca_23644_v3' => 'car', 'Ca_26735_v3' => 'car', 'Cc01_g13130' => 'ccan', 'Cc02_g21690' => 'ccan', 'Cc03_g03600' => 'ccan', 'Cc06_g02510' => 'ccan', 'CDE02G1265' => 'cde', 'CDE05G0415' => 'cde', 'CDE08G1082' => 'cde', 'Cfa005780' => 'cfa', 'Cfa011522' => 'cfa', 'Cfa011523' => 'cfa', 'Cfa015627' => 'cfa', 'Cfa017359' => 'cfa', 'Ciclev10005687m.g' => 'ccl', 'Ciclev10012173m.g' => 'ccl', 'Ciclev10021621m.g' => 'ccl', 'Ciclev10028968m.g' => 'ccl', 'Ciclev10029907m.g' => 'ccl', 'CiPaw.01G164800' => 'cil', 'CiPaw.07G083700' => 'cil', 'CiPaw.07G127000' => 'cil', 'CiPaw.07G136900' => 'cil', 'CiPaw.08G081700' => 'cil', 'CiPaw.09G194600' => 'cil', 'CiPaw.10G146500' => 'cil', 'CiPaw.13G091500' => 'cil', 'CiPaw.13G091600' => 'cil', 'ClCG00G003390' => 'cla', 'ClCG01G007220' => 'cla', 'ClCG03G001370' => 'cla', 'ClCG04G008100' => 'cla', 'ClCG06G006110' => 'cla', 'ClCG06G006130' => 'cla', 'ClCG10G021210' => 'cla', 'COL.COLO4_07648' => 'col', 'COL.COLO4_07650' => 'col', 'COL.COLO4_07651' => 'col', 'COL.COLO4_14780' => 'col', 'COL.COLO4_18546' => 'col', 'COL.COLO4_18547' => 'col', 'COL.COLO4_23103' => 'col', 'COL.COLO4_30419' => 'col', 'COL.COLO4_34232' => 'col', 'Cpa.g.sc169.20' => 'cpa', 'Cpa.g.sc57.45' => 'cpa', 'Cpa.g.sc58.124' => 'cpa', 'Cpa.g.sc58.125' => 'cpa', 'Cpa.g.sc81.118' => 'cpa', 'Cpa.g.sc81.119' => 'cpa', 'Cre12.g524700' => 'cre', 'CsaV3_1G034430' => 'csa', 'CsaV3_1G034440' => 'csa', 'CsaV3_1G034450' => 'csa', 'CsaV3_3G034830' => 'csa', 'CsaV3_4G025090' => 'csa', 'CsaV3_5G018660' => 'csa', 'CsaV3_6G038160' => 'csa', 'CSS0003447' => 'camsi', 'CSS0017840' => 'camsi', 'CSS0019260' => 'camsi', 'CSS0040375' => 'camsi', 'CSS0042533' => 'camsi', 'DCAR_005960' => 'dca', 'DCAR_012104' => 'dca', 'DCAR_012105' => 'dca', 'DCAR_012293' => 'dca', 'DCAR_015632' => 'dca', 'DCAR_024602' => 'dca', 'DCAR_028752' => 'dca', 'Dinv06261' => 'din', 'Dinv13982' => 'din', 'Dinv17029' => 'din', 'Dinv18463' => 'din', 'Dinv33181' => 'din', 'Dinv35585' => 'din', 'Dinv37161' => 'din', 'Dinv42977' => 'din', 'Dinv43122' => 'din', 'Dinv44517' => 'din', 'Duzib093G0256' => 'dzi', 'Duzib106G1254' => 'dzi', 'Duzib128G1789' => 'dzi', 'Duzib133G0633' => 'dzi', 'Duzib138G0510' => 'dzi', 'Duzib150G1084' => 'dzi', 'Duzib168G0488' => 'dzi', 'Duzib168G1523' => 'dzi', 'Duzib170G0133' => 'dzi', 'ECA234G1433' => 'eca', 'ECA236G1432' => 'eca', 'ECA236G2256' => 'eca', 'ECA236G2365' => 'eca', 'ECA236G4830' => 'eca', 'ECA248G1505' => 'eca', 'EL10Ac3g06431' => 'bvu', 'EL10Ac5g12577' => 'bvu', 'EL10Ac6g13533' => 'bvu', 'EL10Ac7g16045' => 'bvu', 'Eucgr.A01281' => 'egr', 'Eucgr.B02326' => 'egr', 'Eucgr.H03532' => 'egr', 'Eucgr.K00553' => 'egr', 'Eucgr.K03116' => 'egr', 'FAN02G3963' => 'fan', 'FAN05G0438' => 'fan', 'FAN09G2434' => 'fan', 'FAN12G3984' => 'fan', 'FAN14G0798' => 'fan', 'FAN17G0652' => 'fan', 'FAN19G1988' => 'fan', 'FAN22G0632' => 'fan', 'FAN23G0387' => 'fan', 'FAN26G1323' => 'fan', 'FAN28G0666' => 'fan', 'FvH4_1g26080' => 'fve', 'FvH4_3g36780' => 'fve', 'FvH4_4g15270' => 'fve', 'FvH4_6g13490' => 'fve', 'Glyma.01G098700' => 'gma', 'Glyma.03G065900' => 'gma', 'Glyma.03G073754' => 'gma', 'Glyma.03G073758' => 'gma', 'Glyma.03G083200' => 'gma', 'Glyma.03G225500' => 'gma', 'Glyma.05G037766' => 'gma', 'Glyma.07G133500' => 'gma', 'Glyma.10G139400' => 'gma', 'Glyma.10G248900' => 'gma', 'Glyma.11G137800' => 'gma', 'Glyma.12G061300' => 'gma', 'Glyma.13G337900' => 'gma', 'Glyma.15G036600' => 'gma', 'Glyma.18G182800' => 'gma', 'Glyma.19G222500' => 'gma', 'Glyma.20G144800' => 'gma', 'Gohir.A01G222000' => 'ghi', 'Gohir.A03G044000' => 'ghi', 'Gohir.A03G044100' => 'ghi', 'Gohir.A04G083100' => 'ghi', 'Gohir.A07G127200' => 'ghi', 'Gohir.A07G132400' => 'ghi', 'Gohir.A08G000700' => 'ghi', 'Gohir.A11G327300' => 'ghi', 'Gohir.D01G211500' => 'ghi', 'Gohir.D03G123400' => 'ghi', 'Gohir.D03G123500' => 'ghi', 'Gohir.D04G121800' => 'ghi', 'Gohir.D07G131500' => 'ghi', 'Gohir.D07G136600' => 'ghi', 'Gohir.D08G011600' => 'ghi', 'Gohir.D11G346200' => 'ghi', 'Gorai.001G142800' => 'gra', 'Gorai.001G148700' => 'gra', 'Gorai.002G257300' => 'gra', 'Gorai.003G130000' => 'gra', 'Gorai.003G130100' => 'gra', 'Gorai.004G005300' => 'gra', 'Gorai.007G376500' => 'gra', 'Gorai.012G104700' => 'gra', 'GSVIVG01017946001' => 'vvi', 'GSVIVG01024928001' => 'vvi', 'GSVIVG01028227001' => 'vvi', 'GSVIVG01034151001' => 'vvi', 'HanXRQChr05g0135031' => 'han', 'HanXRQChr05g0135041' => 'han', 'HanXRQChr05g0140021' => 'han', 'HanXRQChr06g0178981' => 'han', 'HanXRQChr07g0188251' => 'han', 'HanXRQChr08g0235311' => 'han', 'HanXRQChr09g0271011' => 'han', 'HanXRQChr10g0293321' => 'han', 'HanXRQChr13g0388171' => 'han', 'Haze_00916' => 'cav', 'Haze_05063' => 'cav', 'Haze_20814' => 'cav', 'Haze_24128' => 'cav', 'Hma1.2p1_0745F.1_g212010' => 'hma', 'Hma1.2p1_0757F.1_g213260' => 'hma', 'Hma1.2p1_0936F.1_g238840' => 'hma', 'Hma1.2p1_1735F.1_g299890' => 'hma', 'Hma1.2p1_1861F.1_g305685' => 'hma', 'HPP92_003397' => 'vpl', 'HPP92_012597' => 'vpl', 'HPP92_015520' => 'vpl', 'HPP92_015539' => 'vpl', 'HPP92_020373' => 'vpl', 'Hund04938' => 'sun', 'Hund10677' => 'sun', 'Hund11033' => 'sun', 'Hund12155' => 'sun', 'Lalb_Chr01g0022551' => 'lal', 'Lalb_Chr03g0042341' => 'lal', 'Lalb_Chr07g0192931' => 'lal', 'Lalb_Chr12g0209551' => 'lal', 'Lalb_Chr19g0125251' => 'lal', 'Lalb_Chr19g0137891' => 'lal', 'Lalb_Chr21g0304641' => 'lal', 'Lalb_Chr21g0309881' => 'lal', 'Lj1A5T12' => 'lonja', 'Lj1C148G10' => 'lonja', 'Lj2A93T83' => 'lonja', 'Lj3A738G68' => 'lonja', 'Lj3C966T1' => 'lonja', 'Lj3g0018958' => 'lja', 'Lj3g0021831' => 'lja', 'Lj3g0025443' => 'lja', 'Lj4g0026809' => 'lja', 'Lj5g0012558' => 'lja', 'Lj5g0021586' => 'lja', 'Lsat_1_v5_gn_5_156840' => 'lsa', 'Lsat_1_v5_gn_8_73460' => 'lsa', 'Lsat_1_v5_gn_8_73481' => 'lsa', 'Lsat_1_v5_gn_9_31601' => 'lsa', 'Lsat_1_v5_gn_9_77320' => 'lsa', 'Manes.01G171300' => 'mes', 'Manes.01G171400' => 'mes', 'Manes.01G236100' => 'mes', 'Manes.02G130500' => 'mes', 'Manes.02G130600' => 'mes', 'Manes.03G180200' => 'mes', 'Manes.05G007000' => 'mes', 'Manes.08G084400' => 'mes', 'Manes.09G092600' => 'mes', 'Manes.15G027900' => 'mes', 'MBI04_g40948_MAGBIO' => 'mbi', 'MBI14_g12123_MAGBIO' => 'mbi', 'MBI18_g28915_MAGBIO' => 'mbi', 'MCO09G053' => 'mco', 'MCO11G782' => 'mco', 'MCO15G215' => 'mco', 'MD03G1088500' => 'mdo', 'MD03G1088600' => 'mdo', 'MD04G1130800' => 'mdo', 'MD09G1291700' => 'mdo', 'MD11G1097500' => 'mdo', 'MD11G1097600' => 'mdo', 'MD12G1143900' => 'mdo', 'MD13G1191400' => 'mdo', 'MD16G1191500' => 'mdo', 'Medtr1g085570' => 'mtr', 'Medtr1g104610' => 'mtr', 'Medtr2g097520' => 'mtr', 'Medtr4g021800' => 'mtr', 'Medtr4g021825' => 'mtr', 'Medtr4g064270' => 'mtr', 'Medtr4g064380' => 'mtr', 'Medtr7g062150' => 'mtr', 'MELO3C003138.2' => 'cme', 'MELO3C005187.2' => 'cme', 'MELO3C009252.2' => 'cme', 'MELO3C014481.2' => 'cme', 'MELO3C020616.2' => 'cme', 'MELO3C020617.2' => 'cme', 'MELO3C020618.2' => 'cme', 'Migut.G00328' => 'egut', 'Migut.J00320' => 'egut', 'Migut.L01000' => 'egut', 'Migut.L01953' => 'egut', 'MSTRG.10253' => 'ama', 'MSTRG.19077' => 'ama', 'MSTRG.26780' => 'ama', 'MSTRG.4023' => 'ama', 'MSTRG.5655' => 'ama', 'MSTRG.9992' => 'ama', 'Nitab4.5_0000043g0310' => 'nta', 'Nitab4.5_0000463g0080' => 'nta', 'Nitab4.5_0000705g0170' => 'nta', 'Nitab4.5_0001326g0060' => 'nta', 'Nitab4.5_0001628g0030' => 'nta', 'Nitab4.5_0002103g0110' => 'nta', 'Nitab4.5_0002946g0030' => 'nta', 'Nitab4.5_0004639g0030' => 'nta', 'Nn2g11149' => 'nnu', 'Nn2g13389' => 'nnu', 'Nn4g25326' => 'nnu', 'Nn4g26290' => 'nnu', 'Nn5g29865' => 'nnu', 'Oeu004163.1' => 'oeu', 'Oeu006901.1' => 'oeu', 'Oeu010096.1' => 'oeu', 'Oeu024340.1' => 'oeu', 'Oeu048369.1' => 'oeu', 'Os01g0973000' => 'osa', 'Os03g0273800' => 'osa', 'Os03g0701200' => 'osa', 'Os03g0834050' => 'osa', 'Os07g0634400' => 'osa', 'Peaxi162Scf00092g01414' => 'pax', 'Peaxi162Scf00165g00818' => 'pax', 'Peaxi162Scf00309g00516' => 'pax', 'Peaxi162Scf00774g00218' => 'pax', 'PGR004G1824' => 'pgr', 'PGR004G2606' => 'pgr', 'PGR031G2716' => 'pgr', 'PGR102G2460' => 'pgr', 'PGR142G2599' => 'pgr', 'PGSC0003DMG400000843' => 'stu', 'PGSC0003DMG400008829' => 'stu', 'PGSC0003DMG400030418' => 'stu', 'PGSC0003DMG400031834' => 'stu', 'PGSC0003DMG401028300' => 'stu', 'PGSC0003DMG402028300' => 'stu', 'Phvul.001G219300' => 'pvu', 'Phvul.007G056000' => 'pvu', 'Phvul.007G208000' => 'pvu', 'Phvul.008G119500' => 'pvu', 'Phvul.010G011200' => 'pvu', 'Phvul.010G014800' => 'pvu', 'Phvul.011G062900' => 'pvu', 'Phvul.L007043' => 'pvu', 'Potri.001G242300' => 'ptr', 'Potri.002G185300' => 'ptr', 'Potri.006G086900' => 'ptr', 'Potri.008G151700' => 'ptr', 'Potri.009G033500' => 'ptr', 'Potri.010G089300' => 'ptr', 'Potri.014G110800' => 'ptr', 'Pp3c27_8130' => 'ppa', 'Pp3c6_27410' => 'ppa', 'PRCOL_00001659' => 'pco', 'PRCOL_00001927' => 'pco', 'PRCOL_00003649' => 'pco', 'Prupe.1G011600' => 'ppe', 'Prupe.3G000800' => 'ppe', 'Prupe.3G001100' => 'ppe', 'Prupe.6G072700' => 'ppe', 'Prupe.6G072800' => 'ppe', 'Prupe.6G257300' => 'ppe', 'Prupe.8G033000' => 'ppe', 'Psat0s2633g0080' => 'psa', 'Psat0s3396g0080' => 'psa', 'Psat0s3396g0200' => 'psa', 'Psat3g139080' => 'psa', 'Psat5g285080' => 'psa', 'Psat6g157760' => 'psa', 'Psat6g208440' => 'psa', 'Psat7g215320' => 'psa', 'Psat7g215400' => 'psa', 'Psat7g235600' => 'psa', 'Psat7g235760' => 'psa', 'PSO063G4603' => 'pso', 'PSO210G0182' => 'pso', 'PSO210G0196' => 'pso', 'PSO339G0394' => 'pso', 'PSO339G4127' => 'pso', 'PSO513G0064' => 'pso', 'PSO761G0079' => 'pso', 'QL01p031003' => 'qlo', 'QL01p031078' => 'qlo', 'QL06p003004' => 'qlo', 'QL07p048731' => 'qlo', 'QL09p037427' => 'qlo', 'RcHm_v2.0_Chr3g0466361' => 'rch', 'RcHm_v2.0_Chr3g0485571' => 'rch', 'RcHm_v2.0_Chr4g0416551' => 'rch', 'RcHm_v2.0_Chr5g0065831' => 'rch', 'Rhsim01G0230500' => 'rsi', 'Rhsim05G0194000' => 'rsi', 'Rhsim08G0250400' => 'rsi', 'Sabra02G0131000' => 'sbr', 'Sabra06G0066300' => 'sbr', 'Sabra08G0115500' => 'sbr', 'Sabra09G0023900' => 'sbr', 'Sabra10G0054000' => 'sbr', 'Sabra14G0081500' => 'sbr', 'Sabra16G0147100' => 'sbr', 'SalBow2G2957' => 'sbo', 'SalBow4G3320' => 'sbo', 'SalBow8G1894' => 'sbo', 'Sc07g0007950' => 'sci', 'Sc12g0001360' => 'sci', 'Sc13g0004330' => 'sci', 'Sc20g0005010' => 'sci', 'Sed0000361' => 'sed', 'Sed0001706' => 'sed', 'Sed0002422' => 'sed', 'Sed0004029' => 'sed', 'Sed0004602' => 'sed', 'Sed0004943' => 'sed', 'Sed0008646' => 'sed', 'Sed0023313' => 'sed', 'Sed0024843' => 'sed', 'SEGI_00081' => 'sgi', 'SEGI_00947' => 'sgi', 'SEGI_04046' => 'sgi', 'SEGI_06880' => 'sgi', 'SEGI_09736' => 'sgi', 'SEGI_12741' => 'sgi', 'SEGI_14530' => 'sgi', 'SEGI_20705' => 'sgi', 'SEGI_26088' => 'sgi', 'SEGI_28323' => 'sgi', 'SEGI_33343' => 'sgi', 'SGA_v2.0_scaffold126G33775' => 'sas', 'SGA_v2.0_scaffold2G01337' => 'sas', 'SGA_v2.0_scaffold38G15006' => 'sas', 'SGA_v2.0_scaffold39G15264' => 'sas', 'SGA_v2.0_scaffold453G51880' => 'sas', 'SHI12696' => 'shi', 'SMO367G1096' => 'smo', 'Solyc01g068630.3' => 'sly', 'Solyc05g011880.3' => 'sly', 'Solyc06g076300.3' => 'sly', 'Solyc09g010940.4' => 'sly', 'Solyc09g075890.3' => 'sly', 'Sopen01g030560' => 'spe', 'Sopen05g006630' => 'spe', 'Sopen06g032720' => 'spe', 'Sopen09g005660' => 'spe', 'Sopen09g030690' => 'spe', 'Sp4g14540' => 'spa', 'Sp4g20030' => 'spa', 'Sp5g01320' => 'spa', 'Sp6g21170' => 'spa', 'Sp6g21180' => 'spa', 'Sp6g21190' => 'spa', 'Sp6g40220' => 'spa', 'TAR362G0122' => 'tar', 'TAR362G1338' => 'tar', 'TAR369G0590' => 'tar', 'TAR371G0824' => 'tar', 'TAR622G1429' => 'tar', 'TAR623G0734' => 'tar', 'TAR625G0441' => 'tar', 'TAR629G0976' => 'tar', 'TAR633G1195' => 'tar', 'TAR636G2660' => 'tar', 'THA.LOC104799440' => 'tha', 'THA.LOC104800966' => 'tha', 'THA.LOC104806559' => 'tha', 'THA.LOC104810765' => 'tha', 'THA.LOC104816266' => 'tha', 'THA.LOC104817419' => 'tha', 'THA.LOC104827021' => 'tha', 'Thecc.01G327400' => 'tca', 'Thecc.04G229200' => 'tca', 'Thecc.05G037400' => 'tca', 'Thecc.09G318600' => 'tca', 'Thecc.09G318700' => 'tca', 'Thhalv10006238m.g' => 'esa', 'Thhalv10014321m.g' => 'esa', 'Thhalv10014335m.g' => 'esa', 'Thhalv10015826m.g' => 'esa', 'Thhalv10017107m.g' => 'esa', 'Thhalv10017180m.g' => 'esa', 'Thhalv10029339m.g' => 'esa', 'TPR.G1699' => 'tpr', 'TPR.G23609' => 'tpr', 'TPR.G3081' => 'tpr', 'TPR.G40397' => 'tpr', 'TPR.G5522' => 'tpr', 'TPR.G5618' => 'tpr', 'TPR.G5626' => 'tpr', 'TWI09G1632' => 'twi', 'TWI23G1230' => 'twi', 'TWI53G1064' => 'twi', 'TWI59G0751' => 'twi', 'TWI74G0947' => 'twi', 'TWI77G0337' => 'twi', 'TWI79G1254' => 'twi', 'unitig_0.g2341' => 'ugi', 'unitig_26.g10006' => 'ugi', 'unitig_26.g10008' => 'ugi', 'unitig_26.g9192' => 'ugi', 'vmacro14547' => 'vma', 'vmacro15333' => 'vma', 'vmacro18743' => 'vma', 'vmacro20166' => 'vma', 'VMungo0331G0523' => 'vmu', 'VMungo0331G1202' => 'vmu', 'VMungo0720G1228' => 'vmu', 'VMungo0720G1514' => 'vmu', 'VMungo1080G0169' => 'vmu', 'VMungo1127G1475' => 'vmu', 'VMungo1383G1208' => 'vmu', 'VMungo1383G1698' => 'vmu', 'Zm00001eb012270' => 'zma', 'Zm00001eb054100' => 'zma', 'Zm00001eb063350' => 'zma', 'Zm00001eb328560' => 'zma', 'Zm00001eb342820' => 'zma', 'Zm00001eb362210' => 'zma', 'Zm00001eb397730' => 'zma', 'Zm00001eb399750' => 'zma' ) $gf_id = 'HOM05D000959' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000959' ) $data_identifier = 'HOM05D000959' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 5, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 5, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 10, 'mbi' => (int) 3, 'mco' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 2, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 3, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 11, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399750' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000959', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '622', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p07100' => 'bna', 'A03p11720' => 'bna', 'A05p08300' => 'bna', 'A05p13380' => 'bna', 'A09p54130' => 'bna', 'A10p16690' => 'bna', 'A10p16700' => 'bna', 'A10p33390' => 'bna', 'Aa31LG10G16020' => 'aar', 'Aa31LG1G11810' => 'aar', 'Aa31LG1G11830' => 'aar', 'Aa31LG1G22510' => 'aar', 'Aa31LG5G4890' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5793' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2310' => 'aag', 'Actinidia08499' => 'ach', 'Actinidia11262' => 'ach', 'Actinidia23926' => 'ach', 'Actinidia34420' => 'ach', 'Actinidia36970' => 'ach', 'Ah.02g111220' => 'amhyb', 'Ah.15g097750' => 'amhyb', 'AL4G27500' => 'aly', 'AL6G11470' => 'aly', 'AL8G35950' => 'aly', 'AL8G35960' => 'aly', 'AL8G35970' => 'aly', 'Aqoxy1G00912' => 'aox', 'Aqoxy2G02253' => 'aox', 'Aqoxy2G02411' => 'aox', 'Aqoxy5G00485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BZ66YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K8ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM4FUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6BF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HFV7XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25JBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0YNNV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MAKK6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P70IT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP2Z6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V61LZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YWP64R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3S9AI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7PGHH' => 'arhy', 'AT2G32150' => 'ath', 'AT3G62040' => 'ath', 'AT5G02230' => 'ath', 'AT5G59480' => 'ath', 'AT5G59490' => 'ath', 'ATR0332G060' => 'atr', 'ATR0559G190' => 'atr', 'ATR0693G294' => 'atr', 'Atru.chr3.3975' => 'acertr', 'Atru.chr3.3976' => 'acertr', 'Atru.chr3.3977' => 'acertr', 'Atru.chr4.2498' => 'acertr', 'Atru.chr5.838' => 'acertr', 'Atru.chr8.1990' => 'acertr', 'Atru.chr8.1991' => 'acertr', 'Atru.chr8.1992' => 'acertr', 'AUR62001759' => 'cqu', 'AUR62009545' => 'cqu', 'AUR62010474' => 'cqu', 'AUR62025820' => 'cqu', 'AUR62030422' => 'cqu', 'AUR62033605' => 'cqu', 'AUR62038615' => 'cqu', 'AUR62041347' => 'cqu', 'BcaB01g04574' => 'bca', 'BcaB02g09263' => 'bca', 'BcaB02g10453' => 'bca', 'BcaB05g22513' => 'bca', 'BcaB08g36253' => 'bca', 'BcaB08g36254' => 'bca', 'BcaC01g06519' => 'bca', 'BcaC02g11889' => 'bca', 'BcaC03g14010' => 'bca', 'BcaC03g18439' => 'bca', 'BcaC04g19765' => 'bca', 'BcaC09g48432' => 'bca', 'BcaNung07302' => 'bca', 'BolC2t06040H' => 'bol', 'BolC2t07346H' => 'bol', 'BolC3t13817H' => 'bol', 'BolC4t22625H' => 'bol', 'BolC4t23297H' => 'bol', 'BolC8t51278H' => 'bol', 'BolC9t58050H' => 'bol', 'BolC9t58051H' => 'bol', 'BolC9t60163H' => 'bol', 'BraA02t04712Z' => 'bra', 'BraA02t05791Z' => 'bra', 'BraA03t10483Z' => 'bra', 'BraA05t19795Z' => 'bra', 'BraA05t20276Z' => 'bra', 'BraA09t40827Z' => 'bra', 'BraA10t43750Z' => 'bra', 'BraA10t43751Z' => 'bra', 'BraA10t45370Z' => 'bra', 'C02p00400' => 'bna', 'C02p12460' => 'bna', 'C03p13680' => 'bna', 'C04p10270' => 'bna', 'C04p17500' => 'bna', 'C08p37010' => 'bna', 'C09p51880' => 'bna', 'C09p51890' => 'bna', 'C09p74300' => 'bna', 'CAN.G179.26' => 'can', 'CAN.G3384.1' => 'can', 'CAN.G394.68' => 'can', 'CAN.G907.13' => 'can', 'CANSAT11G0012' => 'cansat', 'CANSAT25G1586' => 'cansat', 'CANSAT35G0735' => 'cansat', 'CANSAT54G0556' => 'cansat', 'CANSAT64G0356' => 'cansat', 'CANSAT78G2042' => 'cansat', 'CARHR125920' => 'chi', 'CARHR131910' => 'chi', 'CARHR172390' => 'chi', 'CARHR211140' => 'chi', 'CARHR285850' => 'chi', 'CARHR285860' => 'chi', 'Carub.0004s1347' => 'cru', 'Carub.0004s1960' => 'cru', 'Carub.0005s2880' => 'cru', 'Carub.0006s0107' => 'cru', 'Carub.0008s2015' => 'cru', 'Carub.0008s2016' => 'cru', 'Carub.0008s2017' => 'cru', 'Ca_01315_v3' => 'car', 'Ca_05063_v3' => 'car', 'Ca_10231_v3' => 'car', 'Ca_10913_v3' => 'car', 'Ca_19156_v3' => 'car', 'Ca_23644_v3' => 'car', 'Ca_26735_v3' => 'car', 'Cc01_g13130' => 'ccan', 'Cc02_g21690' => 'ccan', 'Cc03_g03600' => 'ccan', 'Cc06_g02510' => 'ccan', 'CDE02G1265' => 'cde', 'CDE05G0415' => 'cde', 'CDE08G1082' => 'cde', 'Cfa005780' => 'cfa', 'Cfa011522' => 'cfa', 'Cfa011523' => 'cfa', 'Cfa015627' => 'cfa', 'Cfa017359' => 'cfa', 'Ciclev10005687m.g' => 'ccl', 'Ciclev10012173m.g' => 'ccl', 'Ciclev10021621m.g' => 'ccl', 'Ciclev10028968m.g' => 'ccl', 'Ciclev10029907m.g' => 'ccl', 'CiPaw.01G164800' => 'cil', 'CiPaw.07G083700' => 'cil', 'CiPaw.07G127000' => 'cil', 'CiPaw.07G136900' => 'cil', 'CiPaw.08G081700' => 'cil', 'CiPaw.09G194600' => 'cil', 'CiPaw.10G146500' => 'cil', 'CiPaw.13G091500' => 'cil', 'CiPaw.13G091600' => 'cil', 'ClCG00G003390' => 'cla', 'ClCG01G007220' => 'cla', 'ClCG03G001370' => 'cla', 'ClCG04G008100' => 'cla', 'ClCG06G006110' => 'cla', 'ClCG06G006130' => 'cla', 'ClCG10G021210' => 'cla', 'COL.COLO4_07648' => 'col', 'COL.COLO4_07650' => 'col', 'COL.COLO4_07651' => 'col', 'COL.COLO4_14780' => 'col', 'COL.COLO4_18546' => 'col', 'COL.COLO4_18547' => 'col', 'COL.COLO4_23103' => 'col', 'COL.COLO4_30419' => 'col', 'COL.COLO4_34232' => 'col', 'Cpa.g.sc169.20' => 'cpa', 'Cpa.g.sc57.45' => 'cpa', 'Cpa.g.sc58.124' => 'cpa', 'Cpa.g.sc58.125' => 'cpa', 'Cpa.g.sc81.118' => 'cpa', 'Cpa.g.sc81.119' => 'cpa', 'Cre12.g524700' => 'cre', 'CsaV3_1G034430' => 'csa', 'CsaV3_1G034440' => 'csa', 'CsaV3_1G034450' => 'csa', 'CsaV3_3G034830' => 'csa', 'CsaV3_4G025090' => 'csa', 'CsaV3_5G018660' => 'csa', 'CsaV3_6G038160' => 'csa', 'CSS0003447' => 'camsi', 'CSS0017840' => 'camsi', 'CSS0019260' => 'camsi', 'CSS0040375' => 'camsi', 'CSS0042533' => 'camsi', 'DCAR_005960' => 'dca', 'DCAR_012104' => 'dca', 'DCAR_012105' => 'dca', 'DCAR_012293' => 'dca', 'DCAR_015632' => 'dca', 'DCAR_024602' => 'dca', 'DCAR_028752' => 'dca', 'Dinv06261' => 'din', 'Dinv13982' => 'din', 'Dinv17029' => 'din', 'Dinv18463' => 'din', 'Dinv33181' => 'din', 'Dinv35585' => 'din', 'Dinv37161' => 'din', 'Dinv42977' => 'din', 'Dinv43122' => 'din', 'Dinv44517' => 'din', 'Duzib093G0256' => 'dzi', 'Duzib106G1254' => 'dzi', 'Duzib128G1789' => 'dzi', 'Duzib133G0633' => 'dzi', 'Duzib138G0510' => 'dzi', 'Duzib150G1084' => 'dzi', 'Duzib168G0488' => 'dzi', 'Duzib168G1523' => 'dzi', 'Duzib170G0133' => 'dzi', 'ECA234G1433' => 'eca', 'ECA236G1432' => 'eca', 'ECA236G2256' => 'eca', 'ECA236G2365' => 'eca', 'ECA236G4830' => 'eca', 'ECA248G1505' => 'eca', 'EL10Ac3g06431' => 'bvu', 'EL10Ac5g12577' => 'bvu', 'EL10Ac6g13533' => 'bvu', 'EL10Ac7g16045' => 'bvu', 'Eucgr.A01281' => 'egr', 'Eucgr.B02326' => 'egr', 'Eucgr.H03532' => 'egr', 'Eucgr.K00553' => 'egr', 'Eucgr.K03116' => 'egr', 'FAN02G3963' => 'fan', 'FAN05G0438' => 'fan', 'FAN09G2434' => 'fan', 'FAN12G3984' => 'fan', 'FAN14G0798' => 'fan', 'FAN17G0652' => 'fan', 'FAN19G1988' => 'fan', 'FAN22G0632' => 'fan', 'FAN23G0387' => 'fan', 'FAN26G1323' => 'fan', 'FAN28G0666' => 'fan', 'FvH4_1g26080' => 'fve', 'FvH4_3g36780' => 'fve', 'FvH4_4g15270' => 'fve', 'FvH4_6g13490' => 'fve', 'Glyma.01G098700' => 'gma', 'Glyma.03G065900' => 'gma', 'Glyma.03G073754' => 'gma', 'Glyma.03G073758' => 'gma', 'Glyma.03G083200' => 'gma', 'Glyma.03G225500' => 'gma', 'Glyma.05G037766' => 'gma', 'Glyma.07G133500' => 'gma', 'Glyma.10G139400' => 'gma', 'Glyma.10G248900' => 'gma', 'Glyma.11G137800' => 'gma', 'Glyma.12G061300' => 'gma', 'Glyma.13G337900' => 'gma', 'Glyma.15G036600' => 'gma', 'Glyma.18G182800' => 'gma', 'Glyma.19G222500' => 'gma', 'Glyma.20G144800' => 'gma', 'Gohir.A01G222000' => 'ghi', 'Gohir.A03G044000' => 'ghi', 'Gohir.A03G044100' => 'ghi', 'Gohir.A04G083100' => 'ghi', 'Gohir.A07G127200' => 'ghi', 'Gohir.A07G132400' => 'ghi', 'Gohir.A08G000700' => 'ghi', 'Gohir.A11G327300' => 'ghi', 'Gohir.D01G211500' => 'ghi', 'Gohir.D03G123400' => 'ghi', 'Gohir.D03G123500' => 'ghi', 'Gohir.D04G121800' => 'ghi', 'Gohir.D07G131500' => 'ghi', 'Gohir.D07G136600' => 'ghi', 'Gohir.D08G011600' => 'ghi', 'Gohir.D11G346200' => 'ghi', 'Gorai.001G142800' => 'gra', 'Gorai.001G148700' => 'gra', 'Gorai.002G257300' => 'gra', 'Gorai.003G130000' => 'gra', 'Gorai.003G130100' => 'gra', 'Gorai.004G005300' => 'gra', 'Gorai.007G376500' => 'gra', 'Gorai.012G104700' => 'gra', 'GSVIVG01017946001' => 'vvi', 'GSVIVG01024928001' => 'vvi', 'GSVIVG01028227001' => 'vvi', 'GSVIVG01034151001' => 'vvi', 'HanXRQChr05g0135031' => 'han', 'HanXRQChr05g0135041' => 'han', 'HanXRQChr05g0140021' => 'han', 'HanXRQChr06g0178981' => 'han', 'HanXRQChr07g0188251' => 'han', 'HanXRQChr08g0235311' => 'han', 'HanXRQChr09g0271011' => 'han', 'HanXRQChr10g0293321' => 'han', 'HanXRQChr13g0388171' => 'han', 'Haze_00916' => 'cav', 'Haze_05063' => 'cav', 'Haze_20814' => 'cav', 'Haze_24128' => 'cav', 'Hma1.2p1_0745F.1_g212010' => 'hma', 'Hma1.2p1_0757F.1_g213260' => 'hma', 'Hma1.2p1_0936F.1_g238840' => 'hma', 'Hma1.2p1_1735F.1_g299890' => 'hma', 'Hma1.2p1_1861F.1_g305685' => 'hma', 'HPP92_003397' => 'vpl', 'HPP92_012597' => 'vpl', 'HPP92_015520' => 'vpl', 'HPP92_015539' => 'vpl', 'HPP92_020373' => 'vpl', 'Hund04938' => 'sun', 'Hund10677' => 'sun', 'Hund11033' => 'sun', 'Hund12155' => 'sun', 'Lalb_Chr01g0022551' => 'lal', 'Lalb_Chr03g0042341' => 'lal', 'Lalb_Chr07g0192931' => 'lal', 'Lalb_Chr12g0209551' => 'lal', 'Lalb_Chr19g0125251' => 'lal', 'Lalb_Chr19g0137891' => 'lal', 'Lalb_Chr21g0304641' => 'lal', 'Lalb_Chr21g0309881' => 'lal', 'Lj1A5T12' => 'lonja', 'Lj1C148G10' => 'lonja', 'Lj2A93T83' => 'lonja', 'Lj3A738G68' => 'lonja', 'Lj3C966T1' => 'lonja', 'Lj3g0018958' => 'lja', 'Lj3g0021831' => 'lja', 'Lj3g0025443' => 'lja', 'Lj4g0026809' => 'lja', 'Lj5g0012558' => 'lja', 'Lj5g0021586' => 'lja', 'Lsat_1_v5_gn_5_156840' => 'lsa', 'Lsat_1_v5_gn_8_73460' => 'lsa', 'Lsat_1_v5_gn_8_73481' => 'lsa', 'Lsat_1_v5_gn_9_31601' => 'lsa', 'Lsat_1_v5_gn_9_77320' => 'lsa', 'Manes.01G171300' => 'mes', 'Manes.01G171400' => 'mes', 'Manes.01G236100' => 'mes', 'Manes.02G130500' => 'mes', 'Manes.02G130600' => 'mes', 'Manes.03G180200' => 'mes', 'Manes.05G007000' => 'mes', 'Manes.08G084400' => 'mes', 'Manes.09G092600' => 'mes', 'Manes.15G027900' => 'mes', 'MBI04_g40948_MAGBIO' => 'mbi', 'MBI14_g12123_MAGBIO' => 'mbi', 'MBI18_g28915_MAGBIO' => 'mbi', 'MCO09G053' => 'mco', 'MCO11G782' => 'mco', 'MCO15G215' => 'mco', 'MD03G1088500' => 'mdo', 'MD03G1088600' => 'mdo', 'MD04G1130800' => 'mdo', 'MD09G1291700' => 'mdo', 'MD11G1097500' => 'mdo', 'MD11G1097600' => 'mdo', 'MD12G1143900' => 'mdo', 'MD13G1191400' => 'mdo', 'MD16G1191500' => 'mdo', 'Medtr1g085570' => 'mtr', 'Medtr1g104610' => 'mtr', 'Medtr2g097520' => 'mtr', 'Medtr4g021800' => 'mtr', 'Medtr4g021825' => 'mtr', 'Medtr4g064270' => 'mtr', 'Medtr4g064380' => 'mtr', 'Medtr7g062150' => 'mtr', 'MELO3C003138.2' => 'cme', 'MELO3C005187.2' => 'cme', 'MELO3C009252.2' => 'cme', 'MELO3C014481.2' => 'cme', 'MELO3C020616.2' => 'cme', 'MELO3C020617.2' => 'cme', 'MELO3C020618.2' => 'cme', 'Migut.G00328' => 'egut', 'Migut.J00320' => 'egut', 'Migut.L01000' => 'egut', 'Migut.L01953' => 'egut', 'MSTRG.10253' => 'ama', 'MSTRG.19077' => 'ama', 'MSTRG.26780' => 'ama', 'MSTRG.4023' => 'ama', 'MSTRG.5655' => 'ama', 'MSTRG.9992' => 'ama', 'Nitab4.5_0000043g0310' => 'nta', 'Nitab4.5_0000463g0080' => 'nta', 'Nitab4.5_0000705g0170' => 'nta', 'Nitab4.5_0001326g0060' => 'nta', 'Nitab4.5_0001628g0030' => 'nta', 'Nitab4.5_0002103g0110' => 'nta', 'Nitab4.5_0002946g0030' => 'nta', 'Nitab4.5_0004639g0030' => 'nta', 'Nn2g11149' => 'nnu', 'Nn2g13389' => 'nnu', 'Nn4g25326' => 'nnu', 'Nn4g26290' => 'nnu', 'Nn5g29865' => 'nnu', 'Oeu004163.1' => 'oeu', 'Oeu006901.1' => 'oeu', 'Oeu010096.1' => 'oeu', 'Oeu024340.1' => 'oeu', 'Oeu048369.1' => 'oeu', 'Os01g0973000' => 'osa', 'Os03g0273800' => 'osa', 'Os03g0701200' => 'osa', 'Os03g0834050' => 'osa', 'Os07g0634400' => 'osa', 'Peaxi162Scf00092g01414' => 'pax', 'Peaxi162Scf00165g00818' => 'pax', 'Peaxi162Scf00309g00516' => 'pax', 'Peaxi162Scf00774g00218' => 'pax', 'PGR004G1824' => 'pgr', 'PGR004G2606' => 'pgr', 'PGR031G2716' => 'pgr', 'PGR102G2460' => 'pgr', 'PGR142G2599' => 'pgr', 'PGSC0003DMG400000843' => 'stu', 'PGSC0003DMG400008829' => 'stu', 'PGSC0003DMG400030418' => 'stu', 'PGSC0003DMG400031834' => 'stu', 'PGSC0003DMG401028300' => 'stu', 'PGSC0003DMG402028300' => 'stu', 'Phvul.001G219300' => 'pvu', 'Phvul.007G056000' => 'pvu', 'Phvul.007G208000' => 'pvu', 'Phvul.008G119500' => 'pvu', 'Phvul.010G011200' => 'pvu', 'Phvul.010G014800' => 'pvu', 'Phvul.011G062900' => 'pvu', 'Phvul.L007043' => 'pvu', 'Potri.001G242300' => 'ptr', 'Potri.002G185300' => 'ptr', 'Potri.006G086900' => 'ptr', 'Potri.008G151700' => 'ptr', 'Potri.009G033500' => 'ptr', 'Potri.010G089300' => 'ptr', 'Potri.014G110800' => 'ptr', 'Pp3c27_8130' => 'ppa', 'Pp3c6_27410' => 'ppa', 'PRCOL_00001659' => 'pco', 'PRCOL_00001927' => 'pco', 'PRCOL_00003649' => 'pco', 'Prupe.1G011600' => 'ppe', 'Prupe.3G000800' => 'ppe', 'Prupe.3G001100' => 'ppe', 'Prupe.6G072700' => 'ppe', 'Prupe.6G072800' => 'ppe', 'Prupe.6G257300' => 'ppe', 'Prupe.8G033000' => 'ppe', 'Psat0s2633g0080' => 'psa', 'Psat0s3396g0080' => 'psa', 'Psat0s3396g0200' => 'psa', 'Psat3g139080' => 'psa', 'Psat5g285080' => 'psa', 'Psat6g157760' => 'psa', 'Psat6g208440' => 'psa', 'Psat7g215320' => 'psa', 'Psat7g215400' => 'psa', 'Psat7g235600' => 'psa', 'Psat7g235760' => 'psa', 'PSO063G4603' => 'pso', 'PSO210G0182' => 'pso', 'PSO210G0196' => 'pso', 'PSO339G0394' => 'pso', 'PSO339G4127' => 'pso', 'PSO513G0064' => 'pso', 'PSO761G0079' => 'pso', 'QL01p031003' => 'qlo', 'QL01p031078' => 'qlo', 'QL06p003004' => 'qlo', 'QL07p048731' => 'qlo', 'QL09p037427' => 'qlo', 'RcHm_v2.0_Chr3g0466361' => 'rch', 'RcHm_v2.0_Chr3g0485571' => 'rch', 'RcHm_v2.0_Chr4g0416551' => 'rch', 'RcHm_v2.0_Chr5g0065831' => 'rch', 'Rhsim01G0230500' => 'rsi', 'Rhsim05G0194000' => 'rsi', 'Rhsim08G0250400' => 'rsi', 'Sabra02G0131000' => 'sbr', 'Sabra06G0066300' => 'sbr', 'Sabra08G0115500' => 'sbr', 'Sabra09G0023900' => 'sbr', 'Sabra10G0054000' => 'sbr', 'Sabra14G0081500' => 'sbr', 'Sabra16G0147100' => 'sbr', 'SalBow2G2957' => 'sbo', 'SalBow4G3320' => 'sbo', 'SalBow8G1894' => 'sbo', 'Sc07g0007950' => 'sci', 'Sc12g0001360' => 'sci', 'Sc13g0004330' => 'sci', 'Sc20g0005010' => 'sci', 'Sed0000361' => 'sed', 'Sed0001706' => 'sed', 'Sed0002422' => 'sed', 'Sed0004029' => 'sed', 'Sed0004602' => 'sed', 'Sed0004943' => 'sed', 'Sed0008646' => 'sed', 'Sed0023313' => 'sed', 'Sed0024843' => 'sed', 'SEGI_00081' => 'sgi', 'SEGI_00947' => 'sgi', 'SEGI_04046' => 'sgi', 'SEGI_06880' => 'sgi', 'SEGI_09736' => 'sgi', 'SEGI_12741' => 'sgi', 'SEGI_14530' => 'sgi', 'SEGI_20705' => 'sgi', 'SEGI_26088' => 'sgi', 'SEGI_28323' => 'sgi', 'SEGI_33343' => 'sgi', 'SGA_v2.0_scaffold126G33775' => 'sas', 'SGA_v2.0_scaffold2G01337' => 'sas', 'SGA_v2.0_scaffold38G15006' => 'sas', 'SGA_v2.0_scaffold39G15264' => 'sas', 'SGA_v2.0_scaffold453G51880' => 'sas', 'SHI12696' => 'shi', 'SMO367G1096' => 'smo', 'Solyc01g068630.3' => 'sly', 'Solyc05g011880.3' => 'sly', 'Solyc06g076300.3' => 'sly', 'Solyc09g010940.4' => 'sly', 'Solyc09g075890.3' => 'sly', 'Sopen01g030560' => 'spe', 'Sopen05g006630' => 'spe', 'Sopen06g032720' => 'spe', 'Sopen09g005660' => 'spe', 'Sopen09g030690' => 'spe', 'Sp4g14540' => 'spa', 'Sp4g20030' => 'spa', 'Sp5g01320' => 'spa', 'Sp6g21170' => 'spa', 'Sp6g21180' => 'spa', 'Sp6g21190' => 'spa', 'Sp6g40220' => 'spa', 'TAR362G0122' => 'tar', 'TAR362G1338' => 'tar', 'TAR369G0590' => 'tar', 'TAR371G0824' => 'tar', 'TAR622G1429' => 'tar', 'TAR623G0734' => 'tar', 'TAR625G0441' => 'tar', 'TAR629G0976' => 'tar', 'TAR633G1195' => 'tar', 'TAR636G2660' => 'tar', 'THA.LOC104799440' => 'tha', 'THA.LOC104800966' => 'tha', 'THA.LOC104806559' => 'tha', 'THA.LOC104810765' => 'tha', 'THA.LOC104816266' => 'tha', 'THA.LOC104817419' => 'tha', 'THA.LOC104827021' => 'tha', 'Thecc.01G327400' => 'tca', 'Thecc.04G229200' => 'tca', 'Thecc.05G037400' => 'tca', 'Thecc.09G318600' => 'tca', 'Thecc.09G318700' => 'tca', 'Thhalv10006238m.g' => 'esa', 'Thhalv10014321m.g' => 'esa', 'Thhalv10014335m.g' => 'esa', 'Thhalv10015826m.g' => 'esa', 'Thhalv10017107m.g' => 'esa', 'Thhalv10017180m.g' => 'esa', 'Thhalv10029339m.g' => 'esa', 'TPR.G1699' => 'tpr', 'TPR.G23609' => 'tpr', 'TPR.G3081' => 'tpr', 'TPR.G40397' => 'tpr', 'TPR.G5522' => 'tpr', 'TPR.G5618' => 'tpr', 'TPR.G5626' => 'tpr', 'TWI09G1632' => 'twi', 'TWI23G1230' => 'twi', 'TWI53G1064' => 'twi', 'TWI59G0751' => 'twi', 'TWI74G0947' => 'twi', 'TWI77G0337' => 'twi', 'TWI79G1254' => 'twi', 'unitig_0.g2341' => 'ugi', 'unitig_26.g10006' => 'ugi', 'unitig_26.g10008' => 'ugi', 'unitig_26.g9192' => 'ugi', 'vmacro14547' => 'vma', 'vmacro15333' => 'vma', 'vmacro18743' => 'vma', 'vmacro20166' => 'vma', 'VMungo0331G0523' => 'vmu', 'VMungo0331G1202' => 'vmu', 'VMungo0720G1228' => 'vmu', 'VMungo0720G1514' => 'vmu', 'VMungo1080G0169' => 'vmu', 'VMungo1127G1475' => 'vmu', 'VMungo1383G1208' => 'vmu', 'VMungo1383G1698' => 'vmu', 'Zm00001eb012270' => 'zma', 'Zm00001eb054100' => 'zma', 'Zm00001eb063350' => 'zma', 'Zm00001eb328560' => 'zma', 'Zm00001eb342820' => 'zma', 'Zm00001eb362210' => 'zma', 'Zm00001eb397730' => 'zma', 'Zm00001eb399750' => 'zma' ), 'gf_id' => 'HOM05D000959', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000959' ), 'data_identifier' => 'HOM05D000959', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000959', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '622', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p07100' => 'bna', 'A03p11720' => 'bna', 'A05p08300' => 'bna', 'A05p13380' => 'bna', 'A09p54130' => 'bna', 'A10p16690' => 'bna', 'A10p16700' => 'bna', 'A10p33390' => 'bna', 'Aa31LG10G16020' => 'aar', 'Aa31LG1G11810' => 'aar', 'Aa31LG1G11830' => 'aar', 'Aa31LG1G22510' => 'aar', 'Aa31LG5G4890' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5793' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2310' => 'aag', 'Actinidia08499' => 'ach', 'Actinidia11262' => 'ach', 'Actinidia23926' => 'ach', 'Actinidia34420' => 'ach', 'Actinidia36970' => 'ach', 'Ah.02g111220' => 'amhyb', 'Ah.15g097750' => 'amhyb', 'AL4G27500' => 'aly', 'AL6G11470' => 'aly', 'AL8G35950' => 'aly', 'AL8G35960' => 'aly', 'AL8G35970' => 'aly', 'Aqoxy1G00912' => 'aox', 'Aqoxy2G02253' => 'aox', 'Aqoxy2G02411' => 'aox', 'Aqoxy5G00485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BZ66YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K8ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM4FUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6BF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HFV7XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25JBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0YNNV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MAKK6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P70IT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP2Z6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V61LZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YWP64R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3S9AI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7PGHH' => 'arhy', 'AT2G32150' => 'ath', 'AT3G62040' => 'ath', 'AT5G02230' => 'ath', 'AT5G59480' => 'ath', 'AT5G59490' => 'ath', 'ATR0332G060' => 'atr', 'ATR0559G190' => 'atr', 'ATR0693G294' => 'atr', 'Atru.chr3.3975' => 'acertr', 'Atru.chr3.3976' => 'acertr', 'Atru.chr3.3977' => 'acertr', 'Atru.chr4.2498' => 'acertr', 'Atru.chr5.838' => 'acertr', 'Atru.chr8.1990' => 'acertr', 'Atru.chr8.1991' => 'acertr', 'Atru.chr8.1992' => 'acertr', 'AUR62001759' => 'cqu', 'AUR62009545' => 'cqu', 'AUR62010474' => 'cqu', 'AUR62025820' => 'cqu', 'AUR62030422' => 'cqu', 'AUR62033605' => 'cqu', 'AUR62038615' => 'cqu', 'AUR62041347' => 'cqu', 'BcaB01g04574' => 'bca', 'BcaB02g09263' => 'bca', 'BcaB02g10453' => 'bca', 'BcaB05g22513' => 'bca', 'BcaB08g36253' => 'bca', 'BcaB08g36254' => 'bca', 'BcaC01g06519' => 'bca', 'BcaC02g11889' => 'bca', 'BcaC03g14010' => 'bca', 'BcaC03g18439' => 'bca', 'BcaC04g19765' => 'bca', 'BcaC09g48432' => 'bca', 'BcaNung07302' => 'bca', 'BolC2t06040H' => 'bol', 'BolC2t07346H' => 'bol', 'BolC3t13817H' => 'bol', 'BolC4t22625H' => 'bol', 'BolC4t23297H' => 'bol', 'BolC8t51278H' => 'bol', 'BolC9t58050H' => 'bol', 'BolC9t58051H' => 'bol', 'BolC9t60163H' => 'bol', 'BraA02t04712Z' => 'bra', 'BraA02t05791Z' => 'bra', 'BraA03t10483Z' => 'bra', 'BraA05t19795Z' => 'bra', 'BraA05t20276Z' => 'bra', 'BraA09t40827Z' => 'bra', 'BraA10t43750Z' => 'bra', 'BraA10t43751Z' => 'bra', 'BraA10t45370Z' => 'bra', 'C02p00400' => 'bna', 'C02p12460' => 'bna', 'C03p13680' => 'bna', 'C04p10270' => 'bna', 'C04p17500' => 'bna', 'C08p37010' => 'bna', 'C09p51880' => 'bna', 'C09p51890' => 'bna', 'C09p74300' => 'bna', 'CAN.G179.26' => 'can', 'CAN.G3384.1' => 'can', 'CAN.G394.68' => 'can', 'CAN.G907.13' => 'can', 'CANSAT11G0012' => 'cansat', 'CANSAT25G1586' => 'cansat', 'CANSAT35G0735' => 'cansat', 'CANSAT54G0556' => 'cansat', 'CANSAT64G0356' => 'cansat', 'CANSAT78G2042' => 'cansat', 'CARHR125920' => 'chi', 'CARHR131910' => 'chi', 'CARHR172390' => 'chi', 'CARHR211140' => 'chi', 'CARHR285850' => 'chi', 'CARHR285860' => 'chi', 'Carub.0004s1347' => 'cru', 'Carub.0004s1960' => 'cru', 'Carub.0005s2880' => 'cru', 'Carub.0006s0107' => 'cru', 'Carub.0008s2015' => 'cru', 'Carub.0008s2016' => 'cru', 'Carub.0008s2017' => 'cru', 'Ca_01315_v3' => 'car', 'Ca_05063_v3' => 'car', 'Ca_10231_v3' => 'car', 'Ca_10913_v3' => 'car', 'Ca_19156_v3' => 'car', 'Ca_23644_v3' => 'car', 'Ca_26735_v3' => 'car', 'Cc01_g13130' => 'ccan', 'Cc02_g21690' => 'ccan', 'Cc03_g03600' => 'ccan', 'Cc06_g02510' => 'ccan', 'CDE02G1265' => 'cde', 'CDE05G0415' => 'cde', 'CDE08G1082' => 'cde', 'Cfa005780' => 'cfa', 'Cfa011522' => 'cfa', 'Cfa011523' => 'cfa', 'Cfa015627' => 'cfa', 'Cfa017359' => 'cfa', 'Ciclev10005687m.g' => 'ccl', 'Ciclev10012173m.g' => 'ccl', 'Ciclev10021621m.g' => 'ccl', 'Ciclev10028968m.g' => 'ccl', 'Ciclev10029907m.g' => 'ccl', 'CiPaw.01G164800' => 'cil', 'CiPaw.07G083700' => 'cil', 'CiPaw.07G127000' => 'cil', 'CiPaw.07G136900' => 'cil', 'CiPaw.08G081700' => 'cil', 'CiPaw.09G194600' => 'cil', 'CiPaw.10G146500' => 'cil', 'CiPaw.13G091500' => 'cil', 'CiPaw.13G091600' => 'cil', 'ClCG00G003390' => 'cla', 'ClCG01G007220' => 'cla', 'ClCG03G001370' => 'cla', 'ClCG04G008100' => 'cla', 'ClCG06G006110' => 'cla', 'ClCG06G006130' => 'cla', 'ClCG10G021210' => 'cla', 'COL.COLO4_07648' => 'col', 'COL.COLO4_07650' => 'col', 'COL.COLO4_07651' => 'col', 'COL.COLO4_14780' => 'col', 'COL.COLO4_18546' => 'col', 'COL.COLO4_18547' => 'col', 'COL.COLO4_23103' => 'col', 'COL.COLO4_30419' => 'col', 'COL.COLO4_34232' => 'col', 'Cpa.g.sc169.20' => 'cpa', 'Cpa.g.sc57.45' => 'cpa', 'Cpa.g.sc58.124' => 'cpa', 'Cpa.g.sc58.125' => 'cpa', 'Cpa.g.sc81.118' => 'cpa', 'Cpa.g.sc81.119' => 'cpa', 'Cre12.g524700' => 'cre', 'CsaV3_1G034430' => 'csa', 'CsaV3_1G034440' => 'csa', 'CsaV3_1G034450' => 'csa', 'CsaV3_3G034830' => 'csa', 'CsaV3_4G025090' => 'csa', 'CsaV3_5G018660' => 'csa', 'CsaV3_6G038160' => 'csa', 'CSS0003447' => 'camsi', 'CSS0017840' => 'camsi', 'CSS0019260' => 'camsi', 'CSS0040375' => 'camsi', 'CSS0042533' => 'camsi', 'DCAR_005960' => 'dca', 'DCAR_012104' => 'dca', 'DCAR_012105' => 'dca', 'DCAR_012293' => 'dca', 'DCAR_015632' => 'dca', 'DCAR_024602' => 'dca', 'DCAR_028752' => 'dca', 'Dinv06261' => 'din', 'Dinv13982' => 'din', 'Dinv17029' => 'din', 'Dinv18463' => 'din', 'Dinv33181' => 'din', 'Dinv35585' => 'din', 'Dinv37161' => 'din', 'Dinv42977' => 'din', 'Dinv43122' => 'din', 'Dinv44517' => 'din', 'Duzib093G0256' => 'dzi', 'Duzib106G1254' => 'dzi', 'Duzib128G1789' => 'dzi', 'Duzib133G0633' => 'dzi', 'Duzib138G0510' => 'dzi', 'Duzib150G1084' => 'dzi', 'Duzib168G0488' => 'dzi', 'Duzib168G1523' => 'dzi', 'Duzib170G0133' => 'dzi', 'ECA234G1433' => 'eca', 'ECA236G1432' => 'eca', 'ECA236G2256' => 'eca', 'ECA236G2365' => 'eca', 'ECA236G4830' => 'eca', 'ECA248G1505' => 'eca', 'EL10Ac3g06431' => 'bvu', 'EL10Ac5g12577' => 'bvu', 'EL10Ac6g13533' => 'bvu', 'EL10Ac7g16045' => 'bvu', 'Eucgr.A01281' => 'egr', 'Eucgr.B02326' => 'egr', 'Eucgr.H03532' => 'egr', 'Eucgr.K00553' => 'egr', 'Eucgr.K03116' => 'egr', 'FAN02G3963' => 'fan', 'FAN05G0438' => 'fan', 'FAN09G2434' => 'fan', 'FAN12G3984' => 'fan', 'FAN14G0798' => 'fan', 'FAN17G0652' => 'fan', 'FAN19G1988' => 'fan', 'FAN22G0632' => 'fan', 'FAN23G0387' => 'fan', 'FAN26G1323' => 'fan', 'FAN28G0666' => 'fan', 'FvH4_1g26080' => 'fve', 'FvH4_3g36780' => 'fve', 'FvH4_4g15270' => 'fve', 'FvH4_6g13490' => 'fve', 'Glyma.01G098700' => 'gma', 'Glyma.03G065900' => 'gma', 'Glyma.03G073754' => 'gma', 'Glyma.03G073758' => 'gma', 'Glyma.03G083200' => 'gma', 'Glyma.03G225500' => 'gma', 'Glyma.05G037766' => 'gma', 'Glyma.07G133500' => 'gma', 'Glyma.10G139400' => 'gma', 'Glyma.10G248900' => 'gma', 'Glyma.11G137800' => 'gma', 'Glyma.12G061300' => 'gma', 'Glyma.13G337900' => 'gma', 'Glyma.15G036600' => 'gma', 'Glyma.18G182800' => 'gma', 'Glyma.19G222500' => 'gma', 'Glyma.20G144800' => 'gma', 'Gohir.A01G222000' => 'ghi', 'Gohir.A03G044000' => 'ghi', 'Gohir.A03G044100' => 'ghi', 'Gohir.A04G083100' => 'ghi', 'Gohir.A07G127200' => 'ghi', 'Gohir.A07G132400' => 'ghi', 'Gohir.A08G000700' => 'ghi', 'Gohir.A11G327300' => 'ghi', 'Gohir.D01G211500' => 'ghi', 'Gohir.D03G123400' => 'ghi', 'Gohir.D03G123500' => 'ghi', 'Gohir.D04G121800' => 'ghi', 'Gohir.D07G131500' => 'ghi', 'Gohir.D07G136600' => 'ghi', 'Gohir.D08G011600' => 'ghi', 'Gohir.D11G346200' => 'ghi', 'Gorai.001G142800' => 'gra', 'Gorai.001G148700' => 'gra', 'Gorai.002G257300' => 'gra', 'Gorai.003G130000' => 'gra', 'Gorai.003G130100' => 'gra', 'Gorai.004G005300' => 'gra', 'Gorai.007G376500' => 'gra', 'Gorai.012G104700' => 'gra', 'GSVIVG01017946001' => 'vvi', 'GSVIVG01024928001' => 'vvi', 'GSVIVG01028227001' => 'vvi', 'GSVIVG01034151001' => 'vvi', 'HanXRQChr05g0135031' => 'han', 'HanXRQChr05g0135041' => 'han', 'HanXRQChr05g0140021' => 'han', 'HanXRQChr06g0178981' => 'han', 'HanXRQChr07g0188251' => 'han', 'HanXRQChr08g0235311' => 'han', 'HanXRQChr09g0271011' => 'han', 'HanXRQChr10g0293321' => 'han', 'HanXRQChr13g0388171' => 'han', 'Haze_00916' => 'cav', 'Haze_05063' => 'cav', 'Haze_20814' => 'cav', 'Haze_24128' => 'cav', 'Hma1.2p1_0745F.1_g212010' => 'hma', 'Hma1.2p1_0757F.1_g213260' => 'hma', 'Hma1.2p1_0936F.1_g238840' => 'hma', 'Hma1.2p1_1735F.1_g299890' => 'hma', 'Hma1.2p1_1861F.1_g305685' => 'hma', 'HPP92_003397' => 'vpl', 'HPP92_012597' => 'vpl', 'HPP92_015520' => 'vpl', 'HPP92_015539' => 'vpl', 'HPP92_020373' => 'vpl', 'Hund04938' => 'sun', 'Hund10677' => 'sun', 'Hund11033' => 'sun', 'Hund12155' => 'sun', 'Lalb_Chr01g0022551' => 'lal', 'Lalb_Chr03g0042341' => 'lal', 'Lalb_Chr07g0192931' => 'lal', 'Lalb_Chr12g0209551' => 'lal', 'Lalb_Chr19g0125251' => 'lal', 'Lalb_Chr19g0137891' => 'lal', 'Lalb_Chr21g0304641' => 'lal', 'Lalb_Chr21g0309881' => 'lal', 'Lj1A5T12' => 'lonja', 'Lj1C148G10' => 'lonja', 'Lj2A93T83' => 'lonja', 'Lj3A738G68' => 'lonja', 'Lj3C966T1' => 'lonja', 'Lj3g0018958' => 'lja', 'Lj3g0021831' => 'lja', 'Lj3g0025443' => 'lja', 'Lj4g0026809' => 'lja', 'Lj5g0012558' => 'lja', 'Lj5g0021586' => 'lja', 'Lsat_1_v5_gn_5_156840' => 'lsa', 'Lsat_1_v5_gn_8_73460' => 'lsa', 'Lsat_1_v5_gn_8_73481' => 'lsa', 'Lsat_1_v5_gn_9_31601' => 'lsa', 'Lsat_1_v5_gn_9_77320' => 'lsa', 'Manes.01G171300' => 'mes', 'Manes.01G171400' => 'mes', 'Manes.01G236100' => 'mes', 'Manes.02G130500' => 'mes', 'Manes.02G130600' => 'mes', 'Manes.03G180200' => 'mes', 'Manes.05G007000' => 'mes', 'Manes.08G084400' => 'mes', 'Manes.09G092600' => 'mes', 'Manes.15G027900' => 'mes', 'MBI04_g40948_MAGBIO' => 'mbi', 'MBI14_g12123_MAGBIO' => 'mbi', 'MBI18_g28915_MAGBIO' => 'mbi', 'MCO09G053' => 'mco', 'MCO11G782' => 'mco', 'MCO15G215' => 'mco', 'MD03G1088500' => 'mdo', 'MD03G1088600' => 'mdo', 'MD04G1130800' => 'mdo', 'MD09G1291700' => 'mdo', 'MD11G1097500' => 'mdo', 'MD11G1097600' => 'mdo', 'MD12G1143900' => 'mdo', 'MD13G1191400' => 'mdo', 'MD16G1191500' => 'mdo', 'Medtr1g085570' => 'mtr', 'Medtr1g104610' => 'mtr', 'Medtr2g097520' => 'mtr', 'Medtr4g021800' => 'mtr', 'Medtr4g021825' => 'mtr', 'Medtr4g064270' => 'mtr', 'Medtr4g064380' => 'mtr', 'Medtr7g062150' => 'mtr', 'MELO3C003138.2' => 'cme', 'MELO3C005187.2' => 'cme', 'MELO3C009252.2' => 'cme', 'MELO3C014481.2' => 'cme', 'MELO3C020616.2' => 'cme', 'MELO3C020617.2' => 'cme', 'MELO3C020618.2' => 'cme', 'Migut.G00328' => 'egut', 'Migut.J00320' => 'egut', 'Migut.L01000' => 'egut', 'Migut.L01953' => 'egut', 'MSTRG.10253' => 'ama', 'MSTRG.19077' => 'ama', 'MSTRG.26780' => 'ama', 'MSTRG.4023' => 'ama', 'MSTRG.5655' => 'ama', 'MSTRG.9992' => 'ama', 'Nitab4.5_0000043g0310' => 'nta', 'Nitab4.5_0000463g0080' => 'nta', 'Nitab4.5_0000705g0170' => 'nta', 'Nitab4.5_0001326g0060' => 'nta', 'Nitab4.5_0001628g0030' => 'nta', 'Nitab4.5_0002103g0110' => 'nta', 'Nitab4.5_0002946g0030' => 'nta', 'Nitab4.5_0004639g0030' => 'nta', 'Nn2g11149' => 'nnu', 'Nn2g13389' => 'nnu', 'Nn4g25326' => 'nnu', 'Nn4g26290' => 'nnu', 'Nn5g29865' => 'nnu', 'Oeu004163.1' => 'oeu', 'Oeu006901.1' => 'oeu', 'Oeu010096.1' => 'oeu', 'Oeu024340.1' => 'oeu', 'Oeu048369.1' => 'oeu', 'Os01g0973000' => 'osa', 'Os03g0273800' => 'osa', 'Os03g0701200' => 'osa', 'Os03g0834050' => 'osa', 'Os07g0634400' => 'osa', 'Peaxi162Scf00092g01414' => 'pax', 'Peaxi162Scf00165g00818' => 'pax', 'Peaxi162Scf00309g00516' => 'pax', 'Peaxi162Scf00774g00218' => 'pax', 'PGR004G1824' => 'pgr', 'PGR004G2606' => 'pgr', 'PGR031G2716' => 'pgr', 'PGR102G2460' => 'pgr', 'PGR142G2599' => 'pgr', 'PGSC0003DMG400000843' => 'stu', 'PGSC0003DMG400008829' => 'stu', 'PGSC0003DMG400030418' => 'stu', 'PGSC0003DMG400031834' => 'stu', 'PGSC0003DMG401028300' => 'stu', 'PGSC0003DMG402028300' => 'stu', 'Phvul.001G219300' => 'pvu', 'Phvul.007G056000' => 'pvu', 'Phvul.007G208000' => 'pvu', 'Phvul.008G119500' => 'pvu', 'Phvul.010G011200' => 'pvu', 'Phvul.010G014800' => 'pvu', 'Phvul.011G062900' => 'pvu', 'Phvul.L007043' => 'pvu', 'Potri.001G242300' => 'ptr', 'Potri.002G185300' => 'ptr', 'Potri.006G086900' => 'ptr', 'Potri.008G151700' => 'ptr', 'Potri.009G033500' => 'ptr', 'Potri.010G089300' => 'ptr', 'Potri.014G110800' => 'ptr', 'Pp3c27_8130' => 'ppa', 'Pp3c6_27410' => 'ppa', 'PRCOL_00001659' => 'pco', 'PRCOL_00001927' => 'pco', 'PRCOL_00003649' => 'pco', 'Prupe.1G011600' => 'ppe', 'Prupe.3G000800' => 'ppe', 'Prupe.3G001100' => 'ppe', 'Prupe.6G072700' => 'ppe', 'Prupe.6G072800' => 'ppe', 'Prupe.6G257300' => 'ppe', 'Prupe.8G033000' => 'ppe', 'Psat0s2633g0080' => 'psa', 'Psat0s3396g0080' => 'psa', 'Psat0s3396g0200' => 'psa', 'Psat3g139080' => 'psa', 'Psat5g285080' => 'psa', 'Psat6g157760' => 'psa', 'Psat6g208440' => 'psa', 'Psat7g215320' => 'psa', 'Psat7g215400' => 'psa', 'Psat7g235600' => 'psa', 'Psat7g235760' => 'psa', 'PSO063G4603' => 'pso', 'PSO210G0182' => 'pso', 'PSO210G0196' => 'pso', 'PSO339G0394' => 'pso', 'PSO339G4127' => 'pso', 'PSO513G0064' => 'pso', 'PSO761G0079' => 'pso', 'QL01p031003' => 'qlo', 'QL01p031078' => 'qlo', 'QL06p003004' => 'qlo', 'QL07p048731' => 'qlo', 'QL09p037427' => 'qlo', 'RcHm_v2.0_Chr3g0466361' => 'rch', 'RcHm_v2.0_Chr3g0485571' => 'rch', 'RcHm_v2.0_Chr4g0416551' => 'rch', 'RcHm_v2.0_Chr5g0065831' => 'rch', 'Rhsim01G0230500' => 'rsi', 'Rhsim05G0194000' => 'rsi', 'Rhsim08G0250400' => 'rsi', 'Sabra02G0131000' => 'sbr', 'Sabra06G0066300' => 'sbr', 'Sabra08G0115500' => 'sbr', 'Sabra09G0023900' => 'sbr', 'Sabra10G0054000' => 'sbr', 'Sabra14G0081500' => 'sbr', 'Sabra16G0147100' => 'sbr', 'SalBow2G2957' => 'sbo', 'SalBow4G3320' => 'sbo', 'SalBow8G1894' => 'sbo', 'Sc07g0007950' => 'sci', 'Sc12g0001360' => 'sci', 'Sc13g0004330' => 'sci', 'Sc20g0005010' => 'sci', 'Sed0000361' => 'sed', 'Sed0001706' => 'sed', 'Sed0002422' => 'sed', 'Sed0004029' => 'sed', 'Sed0004602' => 'sed', 'Sed0004943' => 'sed', 'Sed0008646' => 'sed', 'Sed0023313' => 'sed', 'Sed0024843' => 'sed', 'SEGI_00081' => 'sgi', 'SEGI_00947' => 'sgi', 'SEGI_04046' => 'sgi', 'SEGI_06880' => 'sgi', 'SEGI_09736' => 'sgi', 'SEGI_12741' => 'sgi', 'SEGI_14530' => 'sgi', 'SEGI_20705' => 'sgi', 'SEGI_26088' => 'sgi', 'SEGI_28323' => 'sgi', 'SEGI_33343' => 'sgi', 'SGA_v2.0_scaffold126G33775' => 'sas', 'SGA_v2.0_scaffold2G01337' => 'sas', 'SGA_v2.0_scaffold38G15006' => 'sas', 'SGA_v2.0_scaffold39G15264' => 'sas', 'SGA_v2.0_scaffold453G51880' => 'sas', 'SHI12696' => 'shi', 'SMO367G1096' => 'smo', 'Solyc01g068630.3' => 'sly', 'Solyc05g011880.3' => 'sly', 'Solyc06g076300.3' => 'sly', 'Solyc09g010940.4' => 'sly', 'Solyc09g075890.3' => 'sly', 'Sopen01g030560' => 'spe', 'Sopen05g006630' => 'spe', 'Sopen06g032720' => 'spe', 'Sopen09g005660' => 'spe', 'Sopen09g030690' => 'spe', 'Sp4g14540' => 'spa', 'Sp4g20030' => 'spa', 'Sp5g01320' => 'spa', 'Sp6g21170' => 'spa', 'Sp6g21180' => 'spa', 'Sp6g21190' => 'spa', 'Sp6g40220' => 'spa', 'TAR362G0122' => 'tar', 'TAR362G1338' => 'tar', 'TAR369G0590' => 'tar', 'TAR371G0824' => 'tar', 'TAR622G1429' => 'tar', 'TAR623G0734' => 'tar', 'TAR625G0441' => 'tar', 'TAR629G0976' => 'tar', 'TAR633G1195' => 'tar', 'TAR636G2660' => 'tar', 'THA.LOC104799440' => 'tha', 'THA.LOC104800966' => 'tha', 'THA.LOC104806559' => 'tha', 'THA.LOC104810765' => 'tha', 'THA.LOC104816266' => 'tha', 'THA.LOC104817419' => 'tha', 'THA.LOC104827021' => 'tha', 'Thecc.01G327400' => 'tca', 'Thecc.04G229200' => 'tca', 'Thecc.05G037400' => 'tca', 'Thecc.09G318600' => 'tca', 'Thecc.09G318700' => 'tca', 'Thhalv10006238m.g' => 'esa', 'Thhalv10014321m.g' => 'esa', 'Thhalv10014335m.g' => 'esa', 'Thhalv10015826m.g' => 'esa', 'Thhalv10017107m.g' => 'esa', 'Thhalv10017180m.g' => 'esa', 'Thhalv10029339m.g' => 'esa', 'TPR.G1699' => 'tpr', 'TPR.G23609' => 'tpr', 'TPR.G3081' => 'tpr', 'TPR.G40397' => 'tpr', 'TPR.G5522' => 'tpr', 'TPR.G5618' => 'tpr', 'TPR.G5626' => 'tpr', 'TWI09G1632' => 'twi', 'TWI23G1230' => 'twi', 'TWI53G1064' => 'twi', 'TWI59G0751' => 'twi', 'TWI74G0947' => 'twi', 'TWI77G0337' => 'twi', 'TWI79G1254' => 'twi', 'unitig_0.g2341' => 'ugi', 'unitig_26.g10006' => 'ugi', 'unitig_26.g10008' => 'ugi', 'unitig_26.g9192' => 'ugi', 'vmacro14547' => 'vma', 'vmacro15333' => 'vma', 'vmacro18743' => 'vma', 'vmacro20166' => 'vma', 'VMungo0331G0523' => 'vmu', 'VMungo0331G1202' => 'vmu', 'VMungo0720G1228' => 'vmu', 'VMungo0720G1514' => 'vmu', 'VMungo1080G0169' => 'vmu', 'VMungo1127G1475' => 'vmu', 'VMungo1383G1208' => 'vmu', 'VMungo1383G1698' => 'vmu', 'Zm00001eb012270' => 'zma', 'Zm00001eb054100' => 'zma', 'Zm00001eb063350' => 'zma', 'Zm00001eb328560' => 'zma', 'Zm00001eb342820' => 'zma', 'Zm00001eb362210' => 'zma', 'Zm00001eb397730' => 'zma', 'Zm00001eb399750' => 'zma' ) $gf_id = 'HOM05D000959' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000959' ) $data_identifier = 'HOM05D000959' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 5, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 5, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 10, 'mbi' => (int) 3, 'mco' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 2, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 3, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 11, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399750' $species_info = array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ) $local_species = 'cre' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000959', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '622', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p07100' => 'bna', 'A03p11720' => 'bna', 'A05p08300' => 'bna', 'A05p13380' => 'bna', 'A09p54130' => 'bna', 'A10p16690' => 'bna', 'A10p16700' => 'bna', 'A10p33390' => 'bna', 'Aa31LG10G16020' => 'aar', 'Aa31LG1G11810' => 'aar', 'Aa31LG1G11830' => 'aar', 'Aa31LG1G22510' => 'aar', 'Aa31LG5G4890' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5793' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2310' => 'aag', 'Actinidia08499' => 'ach', 'Actinidia11262' => 'ach', 'Actinidia23926' => 'ach', 'Actinidia34420' => 'ach', 'Actinidia36970' => 'ach', 'Ah.02g111220' => 'amhyb', 'Ah.15g097750' => 'amhyb', 'AL4G27500' => 'aly', 'AL6G11470' => 'aly', 'AL8G35950' => 'aly', 'AL8G35960' => 'aly', 'AL8G35970' => 'aly', 'Aqoxy1G00912' => 'aox', 'Aqoxy2G02253' => 'aox', 'Aqoxy2G02411' => 'aox', 'Aqoxy5G00485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BZ66YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K8ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM4FUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6BF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HFV7XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25JBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0YNNV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MAKK6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P70IT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP2Z6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V61LZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YWP64R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3S9AI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7PGHH' => 'arhy', 'AT2G32150' => 'ath', 'AT3G62040' => 'ath', 'AT5G02230' => 'ath', 'AT5G59480' => 'ath', 'AT5G59490' => 'ath', 'ATR0332G060' => 'atr', 'ATR0559G190' => 'atr', 'ATR0693G294' => 'atr', 'Atru.chr3.3975' => 'acertr', 'Atru.chr3.3976' => 'acertr', 'Atru.chr3.3977' => 'acertr', 'Atru.chr4.2498' => 'acertr', 'Atru.chr5.838' => 'acertr', 'Atru.chr8.1990' => 'acertr', 'Atru.chr8.1991' => 'acertr', 'Atru.chr8.1992' => 'acertr', 'AUR62001759' => 'cqu', 'AUR62009545' => 'cqu', 'AUR62010474' => 'cqu', 'AUR62025820' => 'cqu', 'AUR62030422' => 'cqu', 'AUR62033605' => 'cqu', 'AUR62038615' => 'cqu', 'AUR62041347' => 'cqu', 'BcaB01g04574' => 'bca', 'BcaB02g09263' => 'bca', 'BcaB02g10453' => 'bca', 'BcaB05g22513' => 'bca', 'BcaB08g36253' => 'bca', 'BcaB08g36254' => 'bca', 'BcaC01g06519' => 'bca', 'BcaC02g11889' => 'bca', 'BcaC03g14010' => 'bca', 'BcaC03g18439' => 'bca', 'BcaC04g19765' => 'bca', 'BcaC09g48432' => 'bca', 'BcaNung07302' => 'bca', 'BolC2t06040H' => 'bol', 'BolC2t07346H' => 'bol', 'BolC3t13817H' => 'bol', 'BolC4t22625H' => 'bol', 'BolC4t23297H' => 'bol', 'BolC8t51278H' => 'bol', 'BolC9t58050H' => 'bol', 'BolC9t58051H' => 'bol', 'BolC9t60163H' => 'bol', 'BraA02t04712Z' => 'bra', 'BraA02t05791Z' => 'bra', 'BraA03t10483Z' => 'bra', 'BraA05t19795Z' => 'bra', 'BraA05t20276Z' => 'bra', 'BraA09t40827Z' => 'bra', 'BraA10t43750Z' => 'bra', 'BraA10t43751Z' => 'bra', 'BraA10t45370Z' => 'bra', 'C02p00400' => 'bna', 'C02p12460' => 'bna', 'C03p13680' => 'bna', 'C04p10270' => 'bna', 'C04p17500' => 'bna', 'C08p37010' => 'bna', 'C09p51880' => 'bna', 'C09p51890' => 'bna', 'C09p74300' => 'bna', 'CAN.G179.26' => 'can', 'CAN.G3384.1' => 'can', 'CAN.G394.68' => 'can', 'CAN.G907.13' => 'can', 'CANSAT11G0012' => 'cansat', 'CANSAT25G1586' => 'cansat', 'CANSAT35G0735' => 'cansat', 'CANSAT54G0556' => 'cansat', 'CANSAT64G0356' => 'cansat', 'CANSAT78G2042' => 'cansat', 'CARHR125920' => 'chi', 'CARHR131910' => 'chi', 'CARHR172390' => 'chi', 'CARHR211140' => 'chi', 'CARHR285850' => 'chi', 'CARHR285860' => 'chi', 'Carub.0004s1347' => 'cru', 'Carub.0004s1960' => 'cru', 'Carub.0005s2880' => 'cru', 'Carub.0006s0107' => 'cru', 'Carub.0008s2015' => 'cru', 'Carub.0008s2016' => 'cru', 'Carub.0008s2017' => 'cru', 'Ca_01315_v3' => 'car', 'Ca_05063_v3' => 'car', 'Ca_10231_v3' => 'car', 'Ca_10913_v3' => 'car', 'Ca_19156_v3' => 'car', 'Ca_23644_v3' => 'car', 'Ca_26735_v3' => 'car', 'Cc01_g13130' => 'ccan', 'Cc02_g21690' => 'ccan', 'Cc03_g03600' => 'ccan', 'Cc06_g02510' => 'ccan', 'CDE02G1265' => 'cde', 'CDE05G0415' => 'cde', 'CDE08G1082' => 'cde', 'Cfa005780' => 'cfa', 'Cfa011522' => 'cfa', 'Cfa011523' => 'cfa', 'Cfa015627' => 'cfa', 'Cfa017359' => 'cfa', 'Ciclev10005687m.g' => 'ccl', 'Ciclev10012173m.g' => 'ccl', 'Ciclev10021621m.g' => 'ccl', 'Ciclev10028968m.g' => 'ccl', 'Ciclev10029907m.g' => 'ccl', 'CiPaw.01G164800' => 'cil', 'CiPaw.07G083700' => 'cil', 'CiPaw.07G127000' => 'cil', 'CiPaw.07G136900' => 'cil', 'CiPaw.08G081700' => 'cil', 'CiPaw.09G194600' => 'cil', 'CiPaw.10G146500' => 'cil', 'CiPaw.13G091500' => 'cil', 'CiPaw.13G091600' => 'cil', 'ClCG00G003390' => 'cla', 'ClCG01G007220' => 'cla', 'ClCG03G001370' => 'cla', 'ClCG04G008100' => 'cla', 'ClCG06G006110' => 'cla', 'ClCG06G006130' => 'cla', 'ClCG10G021210' => 'cla', 'COL.COLO4_07648' => 'col', 'COL.COLO4_07650' => 'col', 'COL.COLO4_07651' => 'col', 'COL.COLO4_14780' => 'col', 'COL.COLO4_18546' => 'col', 'COL.COLO4_18547' => 'col', 'COL.COLO4_23103' => 'col', 'COL.COLO4_30419' => 'col', 'COL.COLO4_34232' => 'col', 'Cpa.g.sc169.20' => 'cpa', 'Cpa.g.sc57.45' => 'cpa', 'Cpa.g.sc58.124' => 'cpa', 'Cpa.g.sc58.125' => 'cpa', 'Cpa.g.sc81.118' => 'cpa', 'Cpa.g.sc81.119' => 'cpa', 'Cre12.g524700' => 'cre', 'CsaV3_1G034430' => 'csa', 'CsaV3_1G034440' => 'csa', 'CsaV3_1G034450' => 'csa', 'CsaV3_3G034830' => 'csa', 'CsaV3_4G025090' => 'csa', 'CsaV3_5G018660' => 'csa', 'CsaV3_6G038160' => 'csa', 'CSS0003447' => 'camsi', 'CSS0017840' => 'camsi', 'CSS0019260' => 'camsi', 'CSS0040375' => 'camsi', 'CSS0042533' => 'camsi', 'DCAR_005960' => 'dca', 'DCAR_012104' => 'dca', 'DCAR_012105' => 'dca', 'DCAR_012293' => 'dca', 'DCAR_015632' => 'dca', 'DCAR_024602' => 'dca', 'DCAR_028752' => 'dca', 'Dinv06261' => 'din', 'Dinv13982' => 'din', 'Dinv17029' => 'din', 'Dinv18463' => 'din', 'Dinv33181' => 'din', 'Dinv35585' => 'din', 'Dinv37161' => 'din', 'Dinv42977' => 'din', 'Dinv43122' => 'din', 'Dinv44517' => 'din', 'Duzib093G0256' => 'dzi', 'Duzib106G1254' => 'dzi', 'Duzib128G1789' => 'dzi', 'Duzib133G0633' => 'dzi', 'Duzib138G0510' => 'dzi', 'Duzib150G1084' => 'dzi', 'Duzib168G0488' => 'dzi', 'Duzib168G1523' => 'dzi', 'Duzib170G0133' => 'dzi', 'ECA234G1433' => 'eca', 'ECA236G1432' => 'eca', 'ECA236G2256' => 'eca', 'ECA236G2365' => 'eca', 'ECA236G4830' => 'eca', 'ECA248G1505' => 'eca', 'EL10Ac3g06431' => 'bvu', 'EL10Ac5g12577' => 'bvu', 'EL10Ac6g13533' => 'bvu', 'EL10Ac7g16045' => 'bvu', 'Eucgr.A01281' => 'egr', 'Eucgr.B02326' => 'egr', 'Eucgr.H03532' => 'egr', 'Eucgr.K00553' => 'egr', 'Eucgr.K03116' => 'egr', 'FAN02G3963' => 'fan', 'FAN05G0438' => 'fan', 'FAN09G2434' => 'fan', 'FAN12G3984' => 'fan', 'FAN14G0798' => 'fan', 'FAN17G0652' => 'fan', 'FAN19G1988' => 'fan', 'FAN22G0632' => 'fan', 'FAN23G0387' => 'fan', 'FAN26G1323' => 'fan', 'FAN28G0666' => 'fan', 'FvH4_1g26080' => 'fve', 'FvH4_3g36780' => 'fve', 'FvH4_4g15270' => 'fve', 'FvH4_6g13490' => 'fve', 'Glyma.01G098700' => 'gma', 'Glyma.03G065900' => 'gma', 'Glyma.03G073754' => 'gma', 'Glyma.03G073758' => 'gma', 'Glyma.03G083200' => 'gma', 'Glyma.03G225500' => 'gma', 'Glyma.05G037766' => 'gma', 'Glyma.07G133500' => 'gma', 'Glyma.10G139400' => 'gma', 'Glyma.10G248900' => 'gma', 'Glyma.11G137800' => 'gma', 'Glyma.12G061300' => 'gma', 'Glyma.13G337900' => 'gma', 'Glyma.15G036600' => 'gma', 'Glyma.18G182800' => 'gma', 'Glyma.19G222500' => 'gma', 'Glyma.20G144800' => 'gma', 'Gohir.A01G222000' => 'ghi', 'Gohir.A03G044000' => 'ghi', 'Gohir.A03G044100' => 'ghi', 'Gohir.A04G083100' => 'ghi', 'Gohir.A07G127200' => 'ghi', 'Gohir.A07G132400' => 'ghi', 'Gohir.A08G000700' => 'ghi', 'Gohir.A11G327300' => 'ghi', 'Gohir.D01G211500' => 'ghi', 'Gohir.D03G123400' => 'ghi', 'Gohir.D03G123500' => 'ghi', 'Gohir.D04G121800' => 'ghi', 'Gohir.D07G131500' => 'ghi', 'Gohir.D07G136600' => 'ghi', 'Gohir.D08G011600' => 'ghi', 'Gohir.D11G346200' => 'ghi', 'Gorai.001G142800' => 'gra', 'Gorai.001G148700' => 'gra', 'Gorai.002G257300' => 'gra', 'Gorai.003G130000' => 'gra', 'Gorai.003G130100' => 'gra', 'Gorai.004G005300' => 'gra', 'Gorai.007G376500' => 'gra', 'Gorai.012G104700' => 'gra', 'GSVIVG01017946001' => 'vvi', 'GSVIVG01024928001' => 'vvi', 'GSVIVG01028227001' => 'vvi', 'GSVIVG01034151001' => 'vvi', 'HanXRQChr05g0135031' => 'han', 'HanXRQChr05g0135041' => 'han', 'HanXRQChr05g0140021' => 'han', 'HanXRQChr06g0178981' => 'han', 'HanXRQChr07g0188251' => 'han', 'HanXRQChr08g0235311' => 'han', 'HanXRQChr09g0271011' => 'han', 'HanXRQChr10g0293321' => 'han', 'HanXRQChr13g0388171' => 'han', 'Haze_00916' => 'cav', 'Haze_05063' => 'cav', 'Haze_20814' => 'cav', 'Haze_24128' => 'cav', 'Hma1.2p1_0745F.1_g212010' => 'hma', 'Hma1.2p1_0757F.1_g213260' => 'hma', 'Hma1.2p1_0936F.1_g238840' => 'hma', 'Hma1.2p1_1735F.1_g299890' => 'hma', 'Hma1.2p1_1861F.1_g305685' => 'hma', 'HPP92_003397' => 'vpl', 'HPP92_012597' => 'vpl', 'HPP92_015520' => 'vpl', 'HPP92_015539' => 'vpl', 'HPP92_020373' => 'vpl', 'Hund04938' => 'sun', 'Hund10677' => 'sun', 'Hund11033' => 'sun', 'Hund12155' => 'sun', 'Lalb_Chr01g0022551' => 'lal', 'Lalb_Chr03g0042341' => 'lal', 'Lalb_Chr07g0192931' => 'lal', 'Lalb_Chr12g0209551' => 'lal', 'Lalb_Chr19g0125251' => 'lal', 'Lalb_Chr19g0137891' => 'lal', 'Lalb_Chr21g0304641' => 'lal', 'Lalb_Chr21g0309881' => 'lal', 'Lj1A5T12' => 'lonja', 'Lj1C148G10' => 'lonja', 'Lj2A93T83' => 'lonja', 'Lj3A738G68' => 'lonja', 'Lj3C966T1' => 'lonja', 'Lj3g0018958' => 'lja', 'Lj3g0021831' => 'lja', 'Lj3g0025443' => 'lja', 'Lj4g0026809' => 'lja', 'Lj5g0012558' => 'lja', 'Lj5g0021586' => 'lja', 'Lsat_1_v5_gn_5_156840' => 'lsa', 'Lsat_1_v5_gn_8_73460' => 'lsa', 'Lsat_1_v5_gn_8_73481' => 'lsa', 'Lsat_1_v5_gn_9_31601' => 'lsa', 'Lsat_1_v5_gn_9_77320' => 'lsa', 'Manes.01G171300' => 'mes', 'Manes.01G171400' => 'mes', 'Manes.01G236100' => 'mes', 'Manes.02G130500' => 'mes', 'Manes.02G130600' => 'mes', 'Manes.03G180200' => 'mes', 'Manes.05G007000' => 'mes', 'Manes.08G084400' => 'mes', 'Manes.09G092600' => 'mes', 'Manes.15G027900' => 'mes', 'MBI04_g40948_MAGBIO' => 'mbi', 'MBI14_g12123_MAGBIO' => 'mbi', 'MBI18_g28915_MAGBIO' => 'mbi', 'MCO09G053' => 'mco', 'MCO11G782' => 'mco', 'MCO15G215' => 'mco', 'MD03G1088500' => 'mdo', 'MD03G1088600' => 'mdo', 'MD04G1130800' => 'mdo', 'MD09G1291700' => 'mdo', 'MD11G1097500' => 'mdo', 'MD11G1097600' => 'mdo', 'MD12G1143900' => 'mdo', 'MD13G1191400' => 'mdo', 'MD16G1191500' => 'mdo', 'Medtr1g085570' => 'mtr', 'Medtr1g104610' => 'mtr', 'Medtr2g097520' => 'mtr', 'Medtr4g021800' => 'mtr', 'Medtr4g021825' => 'mtr', 'Medtr4g064270' => 'mtr', 'Medtr4g064380' => 'mtr', 'Medtr7g062150' => 'mtr', 'MELO3C003138.2' => 'cme', 'MELO3C005187.2' => 'cme', 'MELO3C009252.2' => 'cme', 'MELO3C014481.2' => 'cme', 'MELO3C020616.2' => 'cme', 'MELO3C020617.2' => 'cme', 'MELO3C020618.2' => 'cme', 'Migut.G00328' => 'egut', 'Migut.J00320' => 'egut', 'Migut.L01000' => 'egut', 'Migut.L01953' => 'egut', 'MSTRG.10253' => 'ama', 'MSTRG.19077' => 'ama', 'MSTRG.26780' => 'ama', 'MSTRG.4023' => 'ama', 'MSTRG.5655' => 'ama', 'MSTRG.9992' => 'ama', 'Nitab4.5_0000043g0310' => 'nta', 'Nitab4.5_0000463g0080' => 'nta', 'Nitab4.5_0000705g0170' => 'nta', 'Nitab4.5_0001326g0060' => 'nta', 'Nitab4.5_0001628g0030' => 'nta', 'Nitab4.5_0002103g0110' => 'nta', 'Nitab4.5_0002946g0030' => 'nta', 'Nitab4.5_0004639g0030' => 'nta', 'Nn2g11149' => 'nnu', 'Nn2g13389' => 'nnu', 'Nn4g25326' => 'nnu', 'Nn4g26290' => 'nnu', 'Nn5g29865' => 'nnu', 'Oeu004163.1' => 'oeu', 'Oeu006901.1' => 'oeu', 'Oeu010096.1' => 'oeu', 'Oeu024340.1' => 'oeu', 'Oeu048369.1' => 'oeu', 'Os01g0973000' => 'osa', 'Os03g0273800' => 'osa', 'Os03g0701200' => 'osa', 'Os03g0834050' => 'osa', 'Os07g0634400' => 'osa', 'Peaxi162Scf00092g01414' => 'pax', 'Peaxi162Scf00165g00818' => 'pax', 'Peaxi162Scf00309g00516' => 'pax', 'Peaxi162Scf00774g00218' => 'pax', 'PGR004G1824' => 'pgr', 'PGR004G2606' => 'pgr', 'PGR031G2716' => 'pgr', 'PGR102G2460' => 'pgr', 'PGR142G2599' => 'pgr', 'PGSC0003DMG400000843' => 'stu', 'PGSC0003DMG400008829' => 'stu', 'PGSC0003DMG400030418' => 'stu', 'PGSC0003DMG400031834' => 'stu', 'PGSC0003DMG401028300' => 'stu', 'PGSC0003DMG402028300' => 'stu', 'Phvul.001G219300' => 'pvu', 'Phvul.007G056000' => 'pvu', 'Phvul.007G208000' => 'pvu', 'Phvul.008G119500' => 'pvu', 'Phvul.010G011200' => 'pvu', 'Phvul.010G014800' => 'pvu', 'Phvul.011G062900' => 'pvu', 'Phvul.L007043' => 'pvu', 'Potri.001G242300' => 'ptr', 'Potri.002G185300' => 'ptr', 'Potri.006G086900' => 'ptr', 'Potri.008G151700' => 'ptr', 'Potri.009G033500' => 'ptr', 'Potri.010G089300' => 'ptr', 'Potri.014G110800' => 'ptr', 'Pp3c27_8130' => 'ppa', 'Pp3c6_27410' => 'ppa', 'PRCOL_00001659' => 'pco', 'PRCOL_00001927' => 'pco', 'PRCOL_00003649' => 'pco', 'Prupe.1G011600' => 'ppe', 'Prupe.3G000800' => 'ppe', 'Prupe.3G001100' => 'ppe', 'Prupe.6G072700' => 'ppe', 'Prupe.6G072800' => 'ppe', 'Prupe.6G257300' => 'ppe', 'Prupe.8G033000' => 'ppe', 'Psat0s2633g0080' => 'psa', 'Psat0s3396g0080' => 'psa', 'Psat0s3396g0200' => 'psa', 'Psat3g139080' => 'psa', 'Psat5g285080' => 'psa', 'Psat6g157760' => 'psa', 'Psat6g208440' => 'psa', 'Psat7g215320' => 'psa', 'Psat7g215400' => 'psa', 'Psat7g235600' => 'psa', 'Psat7g235760' => 'psa', 'PSO063G4603' => 'pso', 'PSO210G0182' => 'pso', 'PSO210G0196' => 'pso', 'PSO339G0394' => 'pso', 'PSO339G4127' => 'pso', 'PSO513G0064' => 'pso', 'PSO761G0079' => 'pso', 'QL01p031003' => 'qlo', 'QL01p031078' => 'qlo', 'QL06p003004' => 'qlo', 'QL07p048731' => 'qlo', 'QL09p037427' => 'qlo', 'RcHm_v2.0_Chr3g0466361' => 'rch', 'RcHm_v2.0_Chr3g0485571' => 'rch', 'RcHm_v2.0_Chr4g0416551' => 'rch', 'RcHm_v2.0_Chr5g0065831' => 'rch', 'Rhsim01G0230500' => 'rsi', 'Rhsim05G0194000' => 'rsi', 'Rhsim08G0250400' => 'rsi', 'Sabra02G0131000' => 'sbr', 'Sabra06G0066300' => 'sbr', 'Sabra08G0115500' => 'sbr', 'Sabra09G0023900' => 'sbr', 'Sabra10G0054000' => 'sbr', 'Sabra14G0081500' => 'sbr', 'Sabra16G0147100' => 'sbr', 'SalBow2G2957' => 'sbo', 'SalBow4G3320' => 'sbo', 'SalBow8G1894' => 'sbo', 'Sc07g0007950' => 'sci', 'Sc12g0001360' => 'sci', 'Sc13g0004330' => 'sci', 'Sc20g0005010' => 'sci', 'Sed0000361' => 'sed', 'Sed0001706' => 'sed', 'Sed0002422' => 'sed', 'Sed0004029' => 'sed', 'Sed0004602' => 'sed', 'Sed0004943' => 'sed', 'Sed0008646' => 'sed', 'Sed0023313' => 'sed', 'Sed0024843' => 'sed', 'SEGI_00081' => 'sgi', 'SEGI_00947' => 'sgi', 'SEGI_04046' => 'sgi', 'SEGI_06880' => 'sgi', 'SEGI_09736' => 'sgi', 'SEGI_12741' => 'sgi', 'SEGI_14530' => 'sgi', 'SEGI_20705' => 'sgi', 'SEGI_26088' => 'sgi', 'SEGI_28323' => 'sgi', 'SEGI_33343' => 'sgi', 'SGA_v2.0_scaffold126G33775' => 'sas', 'SGA_v2.0_scaffold2G01337' => 'sas', 'SGA_v2.0_scaffold38G15006' => 'sas', 'SGA_v2.0_scaffold39G15264' => 'sas', 'SGA_v2.0_scaffold453G51880' => 'sas', 'SHI12696' => 'shi', 'SMO367G1096' => 'smo', 'Solyc01g068630.3' => 'sly', 'Solyc05g011880.3' => 'sly', 'Solyc06g076300.3' => 'sly', 'Solyc09g010940.4' => 'sly', 'Solyc09g075890.3' => 'sly', 'Sopen01g030560' => 'spe', 'Sopen05g006630' => 'spe', 'Sopen06g032720' => 'spe', 'Sopen09g005660' => 'spe', 'Sopen09g030690' => 'spe', 'Sp4g14540' => 'spa', 'Sp4g20030' => 'spa', 'Sp5g01320' => 'spa', 'Sp6g21170' => 'spa', 'Sp6g21180' => 'spa', 'Sp6g21190' => 'spa', 'Sp6g40220' => 'spa', 'TAR362G0122' => 'tar', 'TAR362G1338' => 'tar', 'TAR369G0590' => 'tar', 'TAR371G0824' => 'tar', 'TAR622G1429' => 'tar', 'TAR623G0734' => 'tar', 'TAR625G0441' => 'tar', 'TAR629G0976' => 'tar', 'TAR633G1195' => 'tar', 'TAR636G2660' => 'tar', 'THA.LOC104799440' => 'tha', 'THA.LOC104800966' => 'tha', 'THA.LOC104806559' => 'tha', 'THA.LOC104810765' => 'tha', 'THA.LOC104816266' => 'tha', 'THA.LOC104817419' => 'tha', 'THA.LOC104827021' => 'tha', 'Thecc.01G327400' => 'tca', 'Thecc.04G229200' => 'tca', 'Thecc.05G037400' => 'tca', 'Thecc.09G318600' => 'tca', 'Thecc.09G318700' => 'tca', 'Thhalv10006238m.g' => 'esa', 'Thhalv10014321m.g' => 'esa', 'Thhalv10014335m.g' => 'esa', 'Thhalv10015826m.g' => 'esa', 'Thhalv10017107m.g' => 'esa', 'Thhalv10017180m.g' => 'esa', 'Thhalv10029339m.g' => 'esa', 'TPR.G1699' => 'tpr', 'TPR.G23609' => 'tpr', 'TPR.G3081' => 'tpr', 'TPR.G40397' => 'tpr', 'TPR.G5522' => 'tpr', 'TPR.G5618' => 'tpr', 'TPR.G5626' => 'tpr', 'TWI09G1632' => 'twi', 'TWI23G1230' => 'twi', 'TWI53G1064' => 'twi', 'TWI59G0751' => 'twi', 'TWI74G0947' => 'twi', 'TWI77G0337' => 'twi', 'TWI79G1254' => 'twi', 'unitig_0.g2341' => 'ugi', 'unitig_26.g10006' => 'ugi', 'unitig_26.g10008' => 'ugi', 'unitig_26.g9192' => 'ugi', 'vmacro14547' => 'vma', 'vmacro15333' => 'vma', 'vmacro18743' => 'vma', 'vmacro20166' => 'vma', 'VMungo0331G0523' => 'vmu', 'VMungo0331G1202' => 'vmu', 'VMungo0720G1228' => 'vmu', 'VMungo0720G1514' => 'vmu', 'VMungo1080G0169' => 'vmu', 'VMungo1127G1475' => 'vmu', 'VMungo1383G1208' => 'vmu', 'VMungo1383G1698' => 'vmu', 'Zm00001eb012270' => 'zma', 'Zm00001eb054100' => 'zma', 'Zm00001eb063350' => 'zma', 'Zm00001eb328560' => 'zma', 'Zm00001eb342820' => 'zma', 'Zm00001eb362210' => 'zma', 'Zm00001eb397730' => 'zma', 'Zm00001eb399750' => 'zma' ), 'gf_id' => 'HOM05D000959', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000959' ), 'data_identifier' => 'HOM05D000959', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000959', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '622', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p07100' => 'bna', 'A03p11720' => 'bna', 'A05p08300' => 'bna', 'A05p13380' => 'bna', 'A09p54130' => 'bna', 'A10p16690' => 'bna', 'A10p16700' => 'bna', 'A10p33390' => 'bna', 'Aa31LG10G16020' => 'aar', 'Aa31LG1G11810' => 'aar', 'Aa31LG1G11830' => 'aar', 'Aa31LG1G22510' => 'aar', 'Aa31LG5G4890' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5793' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2310' => 'aag', 'Actinidia08499' => 'ach', 'Actinidia11262' => 'ach', 'Actinidia23926' => 'ach', 'Actinidia34420' => 'ach', 'Actinidia36970' => 'ach', 'Ah.02g111220' => 'amhyb', 'Ah.15g097750' => 'amhyb', 'AL4G27500' => 'aly', 'AL6G11470' => 'aly', 'AL8G35950' => 'aly', 'AL8G35960' => 'aly', 'AL8G35970' => 'aly', 'Aqoxy1G00912' => 'aox', 'Aqoxy2G02253' => 'aox', 'Aqoxy2G02411' => 'aox', 'Aqoxy5G00485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BZ66YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K8ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM4FUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6BF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HFV7XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25JBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0YNNV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MAKK6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P70IT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP2Z6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V61LZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YWP64R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3S9AI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7PGHH' => 'arhy', 'AT2G32150' => 'ath', 'AT3G62040' => 'ath', 'AT5G02230' => 'ath', 'AT5G59480' => 'ath', 'AT5G59490' => 'ath', 'ATR0332G060' => 'atr', 'ATR0559G190' => 'atr', 'ATR0693G294' => 'atr', 'Atru.chr3.3975' => 'acertr', 'Atru.chr3.3976' => 'acertr', 'Atru.chr3.3977' => 'acertr', 'Atru.chr4.2498' => 'acertr', 'Atru.chr5.838' => 'acertr', 'Atru.chr8.1990' => 'acertr', 'Atru.chr8.1991' => 'acertr', 'Atru.chr8.1992' => 'acertr', 'AUR62001759' => 'cqu', 'AUR62009545' => 'cqu', 'AUR62010474' => 'cqu', 'AUR62025820' => 'cqu', 'AUR62030422' => 'cqu', 'AUR62033605' => 'cqu', 'AUR62038615' => 'cqu', 'AUR62041347' => 'cqu', 'BcaB01g04574' => 'bca', 'BcaB02g09263' => 'bca', 'BcaB02g10453' => 'bca', 'BcaB05g22513' => 'bca', 'BcaB08g36253' => 'bca', 'BcaB08g36254' => 'bca', 'BcaC01g06519' => 'bca', 'BcaC02g11889' => 'bca', 'BcaC03g14010' => 'bca', 'BcaC03g18439' => 'bca', 'BcaC04g19765' => 'bca', 'BcaC09g48432' => 'bca', 'BcaNung07302' => 'bca', 'BolC2t06040H' => 'bol', 'BolC2t07346H' => 'bol', 'BolC3t13817H' => 'bol', 'BolC4t22625H' => 'bol', 'BolC4t23297H' => 'bol', 'BolC8t51278H' => 'bol', 'BolC9t58050H' => 'bol', 'BolC9t58051H' => 'bol', 'BolC9t60163H' => 'bol', 'BraA02t04712Z' => 'bra', 'BraA02t05791Z' => 'bra', 'BraA03t10483Z' => 'bra', 'BraA05t19795Z' => 'bra', 'BraA05t20276Z' => 'bra', 'BraA09t40827Z' => 'bra', 'BraA10t43750Z' => 'bra', 'BraA10t43751Z' => 'bra', 'BraA10t45370Z' => 'bra', 'C02p00400' => 'bna', 'C02p12460' => 'bna', 'C03p13680' => 'bna', 'C04p10270' => 'bna', 'C04p17500' => 'bna', 'C08p37010' => 'bna', 'C09p51880' => 'bna', 'C09p51890' => 'bna', 'C09p74300' => 'bna', 'CAN.G179.26' => 'can', 'CAN.G3384.1' => 'can', 'CAN.G394.68' => 'can', 'CAN.G907.13' => 'can', 'CANSAT11G0012' => 'cansat', 'CANSAT25G1586' => 'cansat', 'CANSAT35G0735' => 'cansat', 'CANSAT54G0556' => 'cansat', 'CANSAT64G0356' => 'cansat', 'CANSAT78G2042' => 'cansat', 'CARHR125920' => 'chi', 'CARHR131910' => 'chi', 'CARHR172390' => 'chi', 'CARHR211140' => 'chi', 'CARHR285850' => 'chi', 'CARHR285860' => 'chi', 'Carub.0004s1347' => 'cru', 'Carub.0004s1960' => 'cru', 'Carub.0005s2880' => 'cru', 'Carub.0006s0107' => 'cru', 'Carub.0008s2015' => 'cru', 'Carub.0008s2016' => 'cru', 'Carub.0008s2017' => 'cru', 'Ca_01315_v3' => 'car', 'Ca_05063_v3' => 'car', 'Ca_10231_v3' => 'car', 'Ca_10913_v3' => 'car', 'Ca_19156_v3' => 'car', 'Ca_23644_v3' => 'car', 'Ca_26735_v3' => 'car', 'Cc01_g13130' => 'ccan', 'Cc02_g21690' => 'ccan', 'Cc03_g03600' => 'ccan', 'Cc06_g02510' => 'ccan', 'CDE02G1265' => 'cde', 'CDE05G0415' => 'cde', 'CDE08G1082' => 'cde', 'Cfa005780' => 'cfa', 'Cfa011522' => 'cfa', 'Cfa011523' => 'cfa', 'Cfa015627' => 'cfa', 'Cfa017359' => 'cfa', 'Ciclev10005687m.g' => 'ccl', 'Ciclev10012173m.g' => 'ccl', 'Ciclev10021621m.g' => 'ccl', 'Ciclev10028968m.g' => 'ccl', 'Ciclev10029907m.g' => 'ccl', 'CiPaw.01G164800' => 'cil', 'CiPaw.07G083700' => 'cil', 'CiPaw.07G127000' => 'cil', 'CiPaw.07G136900' => 'cil', 'CiPaw.08G081700' => 'cil', 'CiPaw.09G194600' => 'cil', 'CiPaw.10G146500' => 'cil', 'CiPaw.13G091500' => 'cil', 'CiPaw.13G091600' => 'cil', 'ClCG00G003390' => 'cla', 'ClCG01G007220' => 'cla', 'ClCG03G001370' => 'cla', 'ClCG04G008100' => 'cla', 'ClCG06G006110' => 'cla', 'ClCG06G006130' => 'cla', 'ClCG10G021210' => 'cla', 'COL.COLO4_07648' => 'col', 'COL.COLO4_07650' => 'col', 'COL.COLO4_07651' => 'col', 'COL.COLO4_14780' => 'col', 'COL.COLO4_18546' => 'col', 'COL.COLO4_18547' => 'col', 'COL.COLO4_23103' => 'col', 'COL.COLO4_30419' => 'col', 'COL.COLO4_34232' => 'col', 'Cpa.g.sc169.20' => 'cpa', 'Cpa.g.sc57.45' => 'cpa', 'Cpa.g.sc58.124' => 'cpa', 'Cpa.g.sc58.125' => 'cpa', 'Cpa.g.sc81.118' => 'cpa', 'Cpa.g.sc81.119' => 'cpa', 'Cre12.g524700' => 'cre', 'CsaV3_1G034430' => 'csa', 'CsaV3_1G034440' => 'csa', 'CsaV3_1G034450' => 'csa', 'CsaV3_3G034830' => 'csa', 'CsaV3_4G025090' => 'csa', 'CsaV3_5G018660' => 'csa', 'CsaV3_6G038160' => 'csa', 'CSS0003447' => 'camsi', 'CSS0017840' => 'camsi', 'CSS0019260' => 'camsi', 'CSS0040375' => 'camsi', 'CSS0042533' => 'camsi', 'DCAR_005960' => 'dca', 'DCAR_012104' => 'dca', 'DCAR_012105' => 'dca', 'DCAR_012293' => 'dca', 'DCAR_015632' => 'dca', 'DCAR_024602' => 'dca', 'DCAR_028752' => 'dca', 'Dinv06261' => 'din', 'Dinv13982' => 'din', 'Dinv17029' => 'din', 'Dinv18463' => 'din', 'Dinv33181' => 'din', 'Dinv35585' => 'din', 'Dinv37161' => 'din', 'Dinv42977' => 'din', 'Dinv43122' => 'din', 'Dinv44517' => 'din', 'Duzib093G0256' => 'dzi', 'Duzib106G1254' => 'dzi', 'Duzib128G1789' => 'dzi', 'Duzib133G0633' => 'dzi', 'Duzib138G0510' => 'dzi', 'Duzib150G1084' => 'dzi', 'Duzib168G0488' => 'dzi', 'Duzib168G1523' => 'dzi', 'Duzib170G0133' => 'dzi', 'ECA234G1433' => 'eca', 'ECA236G1432' => 'eca', 'ECA236G2256' => 'eca', 'ECA236G2365' => 'eca', 'ECA236G4830' => 'eca', 'ECA248G1505' => 'eca', 'EL10Ac3g06431' => 'bvu', 'EL10Ac5g12577' => 'bvu', 'EL10Ac6g13533' => 'bvu', 'EL10Ac7g16045' => 'bvu', 'Eucgr.A01281' => 'egr', 'Eucgr.B02326' => 'egr', 'Eucgr.H03532' => 'egr', 'Eucgr.K00553' => 'egr', 'Eucgr.K03116' => 'egr', 'FAN02G3963' => 'fan', 'FAN05G0438' => 'fan', 'FAN09G2434' => 'fan', 'FAN12G3984' => 'fan', 'FAN14G0798' => 'fan', 'FAN17G0652' => 'fan', 'FAN19G1988' => 'fan', 'FAN22G0632' => 'fan', 'FAN23G0387' => 'fan', 'FAN26G1323' => 'fan', 'FAN28G0666' => 'fan', 'FvH4_1g26080' => 'fve', 'FvH4_3g36780' => 'fve', 'FvH4_4g15270' => 'fve', 'FvH4_6g13490' => 'fve', 'Glyma.01G098700' => 'gma', 'Glyma.03G065900' => 'gma', 'Glyma.03G073754' => 'gma', 'Glyma.03G073758' => 'gma', 'Glyma.03G083200' => 'gma', 'Glyma.03G225500' => 'gma', 'Glyma.05G037766' => 'gma', 'Glyma.07G133500' => 'gma', 'Glyma.10G139400' => 'gma', 'Glyma.10G248900' => 'gma', 'Glyma.11G137800' => 'gma', 'Glyma.12G061300' => 'gma', 'Glyma.13G337900' => 'gma', 'Glyma.15G036600' => 'gma', 'Glyma.18G182800' => 'gma', 'Glyma.19G222500' => 'gma', 'Glyma.20G144800' => 'gma', 'Gohir.A01G222000' => 'ghi', 'Gohir.A03G044000' => 'ghi', 'Gohir.A03G044100' => 'ghi', 'Gohir.A04G083100' => 'ghi', 'Gohir.A07G127200' => 'ghi', 'Gohir.A07G132400' => 'ghi', 'Gohir.A08G000700' => 'ghi', 'Gohir.A11G327300' => 'ghi', 'Gohir.D01G211500' => 'ghi', 'Gohir.D03G123400' => 'ghi', 'Gohir.D03G123500' => 'ghi', 'Gohir.D04G121800' => 'ghi', 'Gohir.D07G131500' => 'ghi', 'Gohir.D07G136600' => 'ghi', 'Gohir.D08G011600' => 'ghi', 'Gohir.D11G346200' => 'ghi', 'Gorai.001G142800' => 'gra', 'Gorai.001G148700' => 'gra', 'Gorai.002G257300' => 'gra', 'Gorai.003G130000' => 'gra', 'Gorai.003G130100' => 'gra', 'Gorai.004G005300' => 'gra', 'Gorai.007G376500' => 'gra', 'Gorai.012G104700' => 'gra', 'GSVIVG01017946001' => 'vvi', 'GSVIVG01024928001' => 'vvi', 'GSVIVG01028227001' => 'vvi', 'GSVIVG01034151001' => 'vvi', 'HanXRQChr05g0135031' => 'han', 'HanXRQChr05g0135041' => 'han', 'HanXRQChr05g0140021' => 'han', 'HanXRQChr06g0178981' => 'han', 'HanXRQChr07g0188251' => 'han', 'HanXRQChr08g0235311' => 'han', 'HanXRQChr09g0271011' => 'han', 'HanXRQChr10g0293321' => 'han', 'HanXRQChr13g0388171' => 'han', 'Haze_00916' => 'cav', 'Haze_05063' => 'cav', 'Haze_20814' => 'cav', 'Haze_24128' => 'cav', 'Hma1.2p1_0745F.1_g212010' => 'hma', 'Hma1.2p1_0757F.1_g213260' => 'hma', 'Hma1.2p1_0936F.1_g238840' => 'hma', 'Hma1.2p1_1735F.1_g299890' => 'hma', 'Hma1.2p1_1861F.1_g305685' => 'hma', 'HPP92_003397' => 'vpl', 'HPP92_012597' => 'vpl', 'HPP92_015520' => 'vpl', 'HPP92_015539' => 'vpl', 'HPP92_020373' => 'vpl', 'Hund04938' => 'sun', 'Hund10677' => 'sun', 'Hund11033' => 'sun', 'Hund12155' => 'sun', 'Lalb_Chr01g0022551' => 'lal', 'Lalb_Chr03g0042341' => 'lal', 'Lalb_Chr07g0192931' => 'lal', 'Lalb_Chr12g0209551' => 'lal', 'Lalb_Chr19g0125251' => 'lal', 'Lalb_Chr19g0137891' => 'lal', 'Lalb_Chr21g0304641' => 'lal', 'Lalb_Chr21g0309881' => 'lal', 'Lj1A5T12' => 'lonja', 'Lj1C148G10' => 'lonja', 'Lj2A93T83' => 'lonja', 'Lj3A738G68' => 'lonja', 'Lj3C966T1' => 'lonja', 'Lj3g0018958' => 'lja', 'Lj3g0021831' => 'lja', 'Lj3g0025443' => 'lja', 'Lj4g0026809' => 'lja', 'Lj5g0012558' => 'lja', 'Lj5g0021586' => 'lja', 'Lsat_1_v5_gn_5_156840' => 'lsa', 'Lsat_1_v5_gn_8_73460' => 'lsa', 'Lsat_1_v5_gn_8_73481' => 'lsa', 'Lsat_1_v5_gn_9_31601' => 'lsa', 'Lsat_1_v5_gn_9_77320' => 'lsa', 'Manes.01G171300' => 'mes', 'Manes.01G171400' => 'mes', 'Manes.01G236100' => 'mes', 'Manes.02G130500' => 'mes', 'Manes.02G130600' => 'mes', 'Manes.03G180200' => 'mes', 'Manes.05G007000' => 'mes', 'Manes.08G084400' => 'mes', 'Manes.09G092600' => 'mes', 'Manes.15G027900' => 'mes', 'MBI04_g40948_MAGBIO' => 'mbi', 'MBI14_g12123_MAGBIO' => 'mbi', 'MBI18_g28915_MAGBIO' => 'mbi', 'MCO09G053' => 'mco', 'MCO11G782' => 'mco', 'MCO15G215' => 'mco', 'MD03G1088500' => 'mdo', 'MD03G1088600' => 'mdo', 'MD04G1130800' => 'mdo', 'MD09G1291700' => 'mdo', 'MD11G1097500' => 'mdo', 'MD11G1097600' => 'mdo', 'MD12G1143900' => 'mdo', 'MD13G1191400' => 'mdo', 'MD16G1191500' => 'mdo', 'Medtr1g085570' => 'mtr', 'Medtr1g104610' => 'mtr', 'Medtr2g097520' => 'mtr', 'Medtr4g021800' => 'mtr', 'Medtr4g021825' => 'mtr', 'Medtr4g064270' => 'mtr', 'Medtr4g064380' => 'mtr', 'Medtr7g062150' => 'mtr', 'MELO3C003138.2' => 'cme', 'MELO3C005187.2' => 'cme', 'MELO3C009252.2' => 'cme', 'MELO3C014481.2' => 'cme', 'MELO3C020616.2' => 'cme', 'MELO3C020617.2' => 'cme', 'MELO3C020618.2' => 'cme', 'Migut.G00328' => 'egut', 'Migut.J00320' => 'egut', 'Migut.L01000' => 'egut', 'Migut.L01953' => 'egut', 'MSTRG.10253' => 'ama', 'MSTRG.19077' => 'ama', 'MSTRG.26780' => 'ama', 'MSTRG.4023' => 'ama', 'MSTRG.5655' => 'ama', 'MSTRG.9992' => 'ama', 'Nitab4.5_0000043g0310' => 'nta', 'Nitab4.5_0000463g0080' => 'nta', 'Nitab4.5_0000705g0170' => 'nta', 'Nitab4.5_0001326g0060' => 'nta', 'Nitab4.5_0001628g0030' => 'nta', 'Nitab4.5_0002103g0110' => 'nta', 'Nitab4.5_0002946g0030' => 'nta', 'Nitab4.5_0004639g0030' => 'nta', 'Nn2g11149' => 'nnu', 'Nn2g13389' => 'nnu', 'Nn4g25326' => 'nnu', 'Nn4g26290' => 'nnu', 'Nn5g29865' => 'nnu', 'Oeu004163.1' => 'oeu', 'Oeu006901.1' => 'oeu', 'Oeu010096.1' => 'oeu', 'Oeu024340.1' => 'oeu', 'Oeu048369.1' => 'oeu', 'Os01g0973000' => 'osa', 'Os03g0273800' => 'osa', 'Os03g0701200' => 'osa', 'Os03g0834050' => 'osa', 'Os07g0634400' => 'osa', 'Peaxi162Scf00092g01414' => 'pax', 'Peaxi162Scf00165g00818' => 'pax', 'Peaxi162Scf00309g00516' => 'pax', 'Peaxi162Scf00774g00218' => 'pax', 'PGR004G1824' => 'pgr', 'PGR004G2606' => 'pgr', 'PGR031G2716' => 'pgr', 'PGR102G2460' => 'pgr', 'PGR142G2599' => 'pgr', 'PGSC0003DMG400000843' => 'stu', 'PGSC0003DMG400008829' => 'stu', 'PGSC0003DMG400030418' => 'stu', 'PGSC0003DMG400031834' => 'stu', 'PGSC0003DMG401028300' => 'stu', 'PGSC0003DMG402028300' => 'stu', 'Phvul.001G219300' => 'pvu', 'Phvul.007G056000' => 'pvu', 'Phvul.007G208000' => 'pvu', 'Phvul.008G119500' => 'pvu', 'Phvul.010G011200' => 'pvu', 'Phvul.010G014800' => 'pvu', 'Phvul.011G062900' => 'pvu', 'Phvul.L007043' => 'pvu', 'Potri.001G242300' => 'ptr', 'Potri.002G185300' => 'ptr', 'Potri.006G086900' => 'ptr', 'Potri.008G151700' => 'ptr', 'Potri.009G033500' => 'ptr', 'Potri.010G089300' => 'ptr', 'Potri.014G110800' => 'ptr', 'Pp3c27_8130' => 'ppa', 'Pp3c6_27410' => 'ppa', 'PRCOL_00001659' => 'pco', 'PRCOL_00001927' => 'pco', 'PRCOL_00003649' => 'pco', 'Prupe.1G011600' => 'ppe', 'Prupe.3G000800' => 'ppe', 'Prupe.3G001100' => 'ppe', 'Prupe.6G072700' => 'ppe', 'Prupe.6G072800' => 'ppe', 'Prupe.6G257300' => 'ppe', 'Prupe.8G033000' => 'ppe', 'Psat0s2633g0080' => 'psa', 'Psat0s3396g0080' => 'psa', 'Psat0s3396g0200' => 'psa', 'Psat3g139080' => 'psa', 'Psat5g285080' => 'psa', 'Psat6g157760' => 'psa', 'Psat6g208440' => 'psa', 'Psat7g215320' => 'psa', 'Psat7g215400' => 'psa', 'Psat7g235600' => 'psa', 'Psat7g235760' => 'psa', 'PSO063G4603' => 'pso', 'PSO210G0182' => 'pso', 'PSO210G0196' => 'pso', 'PSO339G0394' => 'pso', 'PSO339G4127' => 'pso', 'PSO513G0064' => 'pso', 'PSO761G0079' => 'pso', 'QL01p031003' => 'qlo', 'QL01p031078' => 'qlo', 'QL06p003004' => 'qlo', 'QL07p048731' => 'qlo', 'QL09p037427' => 'qlo', 'RcHm_v2.0_Chr3g0466361' => 'rch', 'RcHm_v2.0_Chr3g0485571' => 'rch', 'RcHm_v2.0_Chr4g0416551' => 'rch', 'RcHm_v2.0_Chr5g0065831' => 'rch', 'Rhsim01G0230500' => 'rsi', 'Rhsim05G0194000' => 'rsi', 'Rhsim08G0250400' => 'rsi', 'Sabra02G0131000' => 'sbr', 'Sabra06G0066300' => 'sbr', 'Sabra08G0115500' => 'sbr', 'Sabra09G0023900' => 'sbr', 'Sabra10G0054000' => 'sbr', 'Sabra14G0081500' => 'sbr', 'Sabra16G0147100' => 'sbr', 'SalBow2G2957' => 'sbo', 'SalBow4G3320' => 'sbo', 'SalBow8G1894' => 'sbo', 'Sc07g0007950' => 'sci', 'Sc12g0001360' => 'sci', 'Sc13g0004330' => 'sci', 'Sc20g0005010' => 'sci', 'Sed0000361' => 'sed', 'Sed0001706' => 'sed', 'Sed0002422' => 'sed', 'Sed0004029' => 'sed', 'Sed0004602' => 'sed', 'Sed0004943' => 'sed', 'Sed0008646' => 'sed', 'Sed0023313' => 'sed', 'Sed0024843' => 'sed', 'SEGI_00081' => 'sgi', 'SEGI_00947' => 'sgi', 'SEGI_04046' => 'sgi', 'SEGI_06880' => 'sgi', 'SEGI_09736' => 'sgi', 'SEGI_12741' => 'sgi', 'SEGI_14530' => 'sgi', 'SEGI_20705' => 'sgi', 'SEGI_26088' => 'sgi', 'SEGI_28323' => 'sgi', 'SEGI_33343' => 'sgi', 'SGA_v2.0_scaffold126G33775' => 'sas', 'SGA_v2.0_scaffold2G01337' => 'sas', 'SGA_v2.0_scaffold38G15006' => 'sas', 'SGA_v2.0_scaffold39G15264' => 'sas', 'SGA_v2.0_scaffold453G51880' => 'sas', 'SHI12696' => 'shi', 'SMO367G1096' => 'smo', 'Solyc01g068630.3' => 'sly', 'Solyc05g011880.3' => 'sly', 'Solyc06g076300.3' => 'sly', 'Solyc09g010940.4' => 'sly', 'Solyc09g075890.3' => 'sly', 'Sopen01g030560' => 'spe', 'Sopen05g006630' => 'spe', 'Sopen06g032720' => 'spe', 'Sopen09g005660' => 'spe', 'Sopen09g030690' => 'spe', 'Sp4g14540' => 'spa', 'Sp4g20030' => 'spa', 'Sp5g01320' => 'spa', 'Sp6g21170' => 'spa', 'Sp6g21180' => 'spa', 'Sp6g21190' => 'spa', 'Sp6g40220' => 'spa', 'TAR362G0122' => 'tar', 'TAR362G1338' => 'tar', 'TAR369G0590' => 'tar', 'TAR371G0824' => 'tar', 'TAR622G1429' => 'tar', 'TAR623G0734' => 'tar', 'TAR625G0441' => 'tar', 'TAR629G0976' => 'tar', 'TAR633G1195' => 'tar', 'TAR636G2660' => 'tar', 'THA.LOC104799440' => 'tha', 'THA.LOC104800966' => 'tha', 'THA.LOC104806559' => 'tha', 'THA.LOC104810765' => 'tha', 'THA.LOC104816266' => 'tha', 'THA.LOC104817419' => 'tha', 'THA.LOC104827021' => 'tha', 'Thecc.01G327400' => 'tca', 'Thecc.04G229200' => 'tca', 'Thecc.05G037400' => 'tca', 'Thecc.09G318600' => 'tca', 'Thecc.09G318700' => 'tca', 'Thhalv10006238m.g' => 'esa', 'Thhalv10014321m.g' => 'esa', 'Thhalv10014335m.g' => 'esa', 'Thhalv10015826m.g' => 'esa', 'Thhalv10017107m.g' => 'esa', 'Thhalv10017180m.g' => 'esa', 'Thhalv10029339m.g' => 'esa', 'TPR.G1699' => 'tpr', 'TPR.G23609' => 'tpr', 'TPR.G3081' => 'tpr', 'TPR.G40397' => 'tpr', 'TPR.G5522' => 'tpr', 'TPR.G5618' => 'tpr', 'TPR.G5626' => 'tpr', 'TWI09G1632' => 'twi', 'TWI23G1230' => 'twi', 'TWI53G1064' => 'twi', 'TWI59G0751' => 'twi', 'TWI74G0947' => 'twi', 'TWI77G0337' => 'twi', 'TWI79G1254' => 'twi', 'unitig_0.g2341' => 'ugi', 'unitig_26.g10006' => 'ugi', 'unitig_26.g10008' => 'ugi', 'unitig_26.g9192' => 'ugi', 'vmacro14547' => 'vma', 'vmacro15333' => 'vma', 'vmacro18743' => 'vma', 'vmacro20166' => 'vma', 'VMungo0331G0523' => 'vmu', 'VMungo0331G1202' => 'vmu', 'VMungo0720G1228' => 'vmu', 'VMungo0720G1514' => 'vmu', 'VMungo1080G0169' => 'vmu', 'VMungo1127G1475' => 'vmu', 'VMungo1383G1208' => 'vmu', 'VMungo1383G1698' => 'vmu', 'Zm00001eb012270' => 'zma', 'Zm00001eb054100' => 'zma', 'Zm00001eb063350' => 'zma', 'Zm00001eb328560' => 'zma', 'Zm00001eb342820' => 'zma', 'Zm00001eb362210' => 'zma', 'Zm00001eb397730' => 'zma', 'Zm00001eb399750' => 'zma' ) $gf_id = 'HOM05D000959' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000959' ) $data_identifier = 'HOM05D000959' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 5, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 5, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 10, 'mbi' => (int) 3, 'mco' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 2, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 3, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 11, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399750' $species_info = array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ) $local_species = 'cre' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000959', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '622', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p07100' => 'bna', 'A03p11720' => 'bna', 'A05p08300' => 'bna', 'A05p13380' => 'bna', 'A09p54130' => 'bna', 'A10p16690' => 'bna', 'A10p16700' => 'bna', 'A10p33390' => 'bna', 'Aa31LG10G16020' => 'aar', 'Aa31LG1G11810' => 'aar', 'Aa31LG1G11830' => 'aar', 'Aa31LG1G22510' => 'aar', 'Aa31LG5G4890' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5793' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2310' => 'aag', 'Actinidia08499' => 'ach', 'Actinidia11262' => 'ach', 'Actinidia23926' => 'ach', 'Actinidia34420' => 'ach', 'Actinidia36970' => 'ach', 'Ah.02g111220' => 'amhyb', 'Ah.15g097750' => 'amhyb', 'AL4G27500' => 'aly', 'AL6G11470' => 'aly', 'AL8G35950' => 'aly', 'AL8G35960' => 'aly', 'AL8G35970' => 'aly', 'Aqoxy1G00912' => 'aox', 'Aqoxy2G02253' => 'aox', 'Aqoxy2G02411' => 'aox', 'Aqoxy5G00485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BZ66YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K8ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM4FUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6BF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HFV7XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25JBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0YNNV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MAKK6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P70IT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP2Z6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V61LZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YWP64R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3S9AI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7PGHH' => 'arhy', 'AT2G32150' => 'ath', 'AT3G62040' => 'ath', 'AT5G02230' => 'ath', 'AT5G59480' => 'ath', 'AT5G59490' => 'ath', 'ATR0332G060' => 'atr', 'ATR0559G190' => 'atr', 'ATR0693G294' => 'atr', 'Atru.chr3.3975' => 'acertr', 'Atru.chr3.3976' => 'acertr', 'Atru.chr3.3977' => 'acertr', 'Atru.chr4.2498' => 'acertr', 'Atru.chr5.838' => 'acertr', 'Atru.chr8.1990' => 'acertr', 'Atru.chr8.1991' => 'acertr', 'Atru.chr8.1992' => 'acertr', 'AUR62001759' => 'cqu', 'AUR62009545' => 'cqu', 'AUR62010474' => 'cqu', 'AUR62025820' => 'cqu', 'AUR62030422' => 'cqu', 'AUR62033605' => 'cqu', 'AUR62038615' => 'cqu', 'AUR62041347' => 'cqu', 'BcaB01g04574' => 'bca', 'BcaB02g09263' => 'bca', 'BcaB02g10453' => 'bca', 'BcaB05g22513' => 'bca', 'BcaB08g36253' => 'bca', 'BcaB08g36254' => 'bca', 'BcaC01g06519' => 'bca', 'BcaC02g11889' => 'bca', 'BcaC03g14010' => 'bca', 'BcaC03g18439' => 'bca', 'BcaC04g19765' => 'bca', 'BcaC09g48432' => 'bca', 'BcaNung07302' => 'bca', 'BolC2t06040H' => 'bol', 'BolC2t07346H' => 'bol', 'BolC3t13817H' => 'bol', 'BolC4t22625H' => 'bol', 'BolC4t23297H' => 'bol', 'BolC8t51278H' => 'bol', 'BolC9t58050H' => 'bol', 'BolC9t58051H' => 'bol', 'BolC9t60163H' => 'bol', 'BraA02t04712Z' => 'bra', 'BraA02t05791Z' => 'bra', 'BraA03t10483Z' => 'bra', 'BraA05t19795Z' => 'bra', 'BraA05t20276Z' => 'bra', 'BraA09t40827Z' => 'bra', 'BraA10t43750Z' => 'bra', 'BraA10t43751Z' => 'bra', 'BraA10t45370Z' => 'bra', 'C02p00400' => 'bna', 'C02p12460' => 'bna', 'C03p13680' => 'bna', 'C04p10270' => 'bna', 'C04p17500' => 'bna', 'C08p37010' => 'bna', 'C09p51880' => 'bna', 'C09p51890' => 'bna', 'C09p74300' => 'bna', 'CAN.G179.26' => 'can', 'CAN.G3384.1' => 'can', 'CAN.G394.68' => 'can', 'CAN.G907.13' => 'can', 'CANSAT11G0012' => 'cansat', 'CANSAT25G1586' => 'cansat', 'CANSAT35G0735' => 'cansat', 'CANSAT54G0556' => 'cansat', 'CANSAT64G0356' => 'cansat', 'CANSAT78G2042' => 'cansat', 'CARHR125920' => 'chi', 'CARHR131910' => 'chi', 'CARHR172390' => 'chi', 'CARHR211140' => 'chi', 'CARHR285850' => 'chi', 'CARHR285860' => 'chi', 'Carub.0004s1347' => 'cru', 'Carub.0004s1960' => 'cru', 'Carub.0005s2880' => 'cru', 'Carub.0006s0107' => 'cru', 'Carub.0008s2015' => 'cru', 'Carub.0008s2016' => 'cru', 'Carub.0008s2017' => 'cru', 'Ca_01315_v3' => 'car', 'Ca_05063_v3' => 'car', 'Ca_10231_v3' => 'car', 'Ca_10913_v3' => 'car', 'Ca_19156_v3' => 'car', 'Ca_23644_v3' => 'car', 'Ca_26735_v3' => 'car', 'Cc01_g13130' => 'ccan', 'Cc02_g21690' => 'ccan', 'Cc03_g03600' => 'ccan', 'Cc06_g02510' => 'ccan', 'CDE02G1265' => 'cde', 'CDE05G0415' => 'cde', 'CDE08G1082' => 'cde', 'Cfa005780' => 'cfa', 'Cfa011522' => 'cfa', 'Cfa011523' => 'cfa', 'Cfa015627' => 'cfa', 'Cfa017359' => 'cfa', 'Ciclev10005687m.g' => 'ccl', 'Ciclev10012173m.g' => 'ccl', 'Ciclev10021621m.g' => 'ccl', 'Ciclev10028968m.g' => 'ccl', 'Ciclev10029907m.g' => 'ccl', 'CiPaw.01G164800' => 'cil', 'CiPaw.07G083700' => 'cil', 'CiPaw.07G127000' => 'cil', 'CiPaw.07G136900' => 'cil', 'CiPaw.08G081700' => 'cil', 'CiPaw.09G194600' => 'cil', 'CiPaw.10G146500' => 'cil', 'CiPaw.13G091500' => 'cil', 'CiPaw.13G091600' => 'cil', 'ClCG00G003390' => 'cla', 'ClCG01G007220' => 'cla', 'ClCG03G001370' => 'cla', 'ClCG04G008100' => 'cla', 'ClCG06G006110' => 'cla', 'ClCG06G006130' => 'cla', 'ClCG10G021210' => 'cla', 'COL.COLO4_07648' => 'col', 'COL.COLO4_07650' => 'col', 'COL.COLO4_07651' => 'col', 'COL.COLO4_14780' => 'col', 'COL.COLO4_18546' => 'col', 'COL.COLO4_18547' => 'col', 'COL.COLO4_23103' => 'col', 'COL.COLO4_30419' => 'col', 'COL.COLO4_34232' => 'col', 'Cpa.g.sc169.20' => 'cpa', 'Cpa.g.sc57.45' => 'cpa', 'Cpa.g.sc58.124' => 'cpa', 'Cpa.g.sc58.125' => 'cpa', 'Cpa.g.sc81.118' => 'cpa', 'Cpa.g.sc81.119' => 'cpa', 'Cre12.g524700' => 'cre', 'CsaV3_1G034430' => 'csa', 'CsaV3_1G034440' => 'csa', 'CsaV3_1G034450' => 'csa', 'CsaV3_3G034830' => 'csa', 'CsaV3_4G025090' => 'csa', 'CsaV3_5G018660' => 'csa', 'CsaV3_6G038160' => 'csa', 'CSS0003447' => 'camsi', 'CSS0017840' => 'camsi', 'CSS0019260' => 'camsi', 'CSS0040375' => 'camsi', 'CSS0042533' => 'camsi', 'DCAR_005960' => 'dca', 'DCAR_012104' => 'dca', 'DCAR_012105' => 'dca', 'DCAR_012293' => 'dca', 'DCAR_015632' => 'dca', 'DCAR_024602' => 'dca', 'DCAR_028752' => 'dca', 'Dinv06261' => 'din', 'Dinv13982' => 'din', 'Dinv17029' => 'din', 'Dinv18463' => 'din', 'Dinv33181' => 'din', 'Dinv35585' => 'din', 'Dinv37161' => 'din', 'Dinv42977' => 'din', 'Dinv43122' => 'din', 'Dinv44517' => 'din', 'Duzib093G0256' => 'dzi', 'Duzib106G1254' => 'dzi', 'Duzib128G1789' => 'dzi', 'Duzib133G0633' => 'dzi', 'Duzib138G0510' => 'dzi', 'Duzib150G1084' => 'dzi', 'Duzib168G0488' => 'dzi', 'Duzib168G1523' => 'dzi', 'Duzib170G0133' => 'dzi', 'ECA234G1433' => 'eca', 'ECA236G1432' => 'eca', 'ECA236G2256' => 'eca', 'ECA236G2365' => 'eca', 'ECA236G4830' => 'eca', 'ECA248G1505' => 'eca', 'EL10Ac3g06431' => 'bvu', 'EL10Ac5g12577' => 'bvu', 'EL10Ac6g13533' => 'bvu', 'EL10Ac7g16045' => 'bvu', 'Eucgr.A01281' => 'egr', 'Eucgr.B02326' => 'egr', 'Eucgr.H03532' => 'egr', 'Eucgr.K00553' => 'egr', 'Eucgr.K03116' => 'egr', 'FAN02G3963' => 'fan', 'FAN05G0438' => 'fan', 'FAN09G2434' => 'fan', 'FAN12G3984' => 'fan', 'FAN14G0798' => 'fan', 'FAN17G0652' => 'fan', 'FAN19G1988' => 'fan', 'FAN22G0632' => 'fan', 'FAN23G0387' => 'fan', 'FAN26G1323' => 'fan', 'FAN28G0666' => 'fan', 'FvH4_1g26080' => 'fve', 'FvH4_3g36780' => 'fve', 'FvH4_4g15270' => 'fve', 'FvH4_6g13490' => 'fve', 'Glyma.01G098700' => 'gma', 'Glyma.03G065900' => 'gma', 'Glyma.03G073754' => 'gma', 'Glyma.03G073758' => 'gma', 'Glyma.03G083200' => 'gma', 'Glyma.03G225500' => 'gma', 'Glyma.05G037766' => 'gma', 'Glyma.07G133500' => 'gma', 'Glyma.10G139400' => 'gma', 'Glyma.10G248900' => 'gma', 'Glyma.11G137800' => 'gma', 'Glyma.12G061300' => 'gma', 'Glyma.13G337900' => 'gma', 'Glyma.15G036600' => 'gma', 'Glyma.18G182800' => 'gma', 'Glyma.19G222500' => 'gma', 'Glyma.20G144800' => 'gma', 'Gohir.A01G222000' => 'ghi', 'Gohir.A03G044000' => 'ghi', 'Gohir.A03G044100' => 'ghi', 'Gohir.A04G083100' => 'ghi', 'Gohir.A07G127200' => 'ghi', 'Gohir.A07G132400' => 'ghi', 'Gohir.A08G000700' => 'ghi', 'Gohir.A11G327300' => 'ghi', 'Gohir.D01G211500' => 'ghi', 'Gohir.D03G123400' => 'ghi', 'Gohir.D03G123500' => 'ghi', 'Gohir.D04G121800' => 'ghi', 'Gohir.D07G131500' => 'ghi', 'Gohir.D07G136600' => 'ghi', 'Gohir.D08G011600' => 'ghi', 'Gohir.D11G346200' => 'ghi', 'Gorai.001G142800' => 'gra', 'Gorai.001G148700' => 'gra', 'Gorai.002G257300' => 'gra', 'Gorai.003G130000' => 'gra', 'Gorai.003G130100' => 'gra', 'Gorai.004G005300' => 'gra', 'Gorai.007G376500' => 'gra', 'Gorai.012G104700' => 'gra', 'GSVIVG01017946001' => 'vvi', 'GSVIVG01024928001' => 'vvi', 'GSVIVG01028227001' => 'vvi', 'GSVIVG01034151001' => 'vvi', 'HanXRQChr05g0135031' => 'han', 'HanXRQChr05g0135041' => 'han', 'HanXRQChr05g0140021' => 'han', 'HanXRQChr06g0178981' => 'han', 'HanXRQChr07g0188251' => 'han', 'HanXRQChr08g0235311' => 'han', 'HanXRQChr09g0271011' => 'han', 'HanXRQChr10g0293321' => 'han', 'HanXRQChr13g0388171' => 'han', 'Haze_00916' => 'cav', 'Haze_05063' => 'cav', 'Haze_20814' => 'cav', 'Haze_24128' => 'cav', 'Hma1.2p1_0745F.1_g212010' => 'hma', 'Hma1.2p1_0757F.1_g213260' => 'hma', 'Hma1.2p1_0936F.1_g238840' => 'hma', 'Hma1.2p1_1735F.1_g299890' => 'hma', 'Hma1.2p1_1861F.1_g305685' => 'hma', 'HPP92_003397' => 'vpl', 'HPP92_012597' => 'vpl', 'HPP92_015520' => 'vpl', 'HPP92_015539' => 'vpl', 'HPP92_020373' => 'vpl', 'Hund04938' => 'sun', 'Hund10677' => 'sun', 'Hund11033' => 'sun', 'Hund12155' => 'sun', 'Lalb_Chr01g0022551' => 'lal', 'Lalb_Chr03g0042341' => 'lal', 'Lalb_Chr07g0192931' => 'lal', 'Lalb_Chr12g0209551' => 'lal', 'Lalb_Chr19g0125251' => 'lal', 'Lalb_Chr19g0137891' => 'lal', 'Lalb_Chr21g0304641' => 'lal', 'Lalb_Chr21g0309881' => 'lal', 'Lj1A5T12' => 'lonja', 'Lj1C148G10' => 'lonja', 'Lj2A93T83' => 'lonja', 'Lj3A738G68' => 'lonja', 'Lj3C966T1' => 'lonja', 'Lj3g0018958' => 'lja', 'Lj3g0021831' => 'lja', 'Lj3g0025443' => 'lja', 'Lj4g0026809' => 'lja', 'Lj5g0012558' => 'lja', 'Lj5g0021586' => 'lja', 'Lsat_1_v5_gn_5_156840' => 'lsa', 'Lsat_1_v5_gn_8_73460' => 'lsa', 'Lsat_1_v5_gn_8_73481' => 'lsa', 'Lsat_1_v5_gn_9_31601' => 'lsa', 'Lsat_1_v5_gn_9_77320' => 'lsa', 'Manes.01G171300' => 'mes', 'Manes.01G171400' => 'mes', 'Manes.01G236100' => 'mes', 'Manes.02G130500' => 'mes', 'Manes.02G130600' => 'mes', 'Manes.03G180200' => 'mes', 'Manes.05G007000' => 'mes', 'Manes.08G084400' => 'mes', 'Manes.09G092600' => 'mes', 'Manes.15G027900' => 'mes', 'MBI04_g40948_MAGBIO' => 'mbi', 'MBI14_g12123_MAGBIO' => 'mbi', 'MBI18_g28915_MAGBIO' => 'mbi', 'MCO09G053' => 'mco', 'MCO11G782' => 'mco', 'MCO15G215' => 'mco', 'MD03G1088500' => 'mdo', 'MD03G1088600' => 'mdo', 'MD04G1130800' => 'mdo', 'MD09G1291700' => 'mdo', 'MD11G1097500' => 'mdo', 'MD11G1097600' => 'mdo', 'MD12G1143900' => 'mdo', 'MD13G1191400' => 'mdo', 'MD16G1191500' => 'mdo', 'Medtr1g085570' => 'mtr', 'Medtr1g104610' => 'mtr', 'Medtr2g097520' => 'mtr', 'Medtr4g021800' => 'mtr', 'Medtr4g021825' => 'mtr', 'Medtr4g064270' => 'mtr', 'Medtr4g064380' => 'mtr', 'Medtr7g062150' => 'mtr', 'MELO3C003138.2' => 'cme', 'MELO3C005187.2' => 'cme', 'MELO3C009252.2' => 'cme', 'MELO3C014481.2' => 'cme', 'MELO3C020616.2' => 'cme', 'MELO3C020617.2' => 'cme', 'MELO3C020618.2' => 'cme', 'Migut.G00328' => 'egut', 'Migut.J00320' => 'egut', 'Migut.L01000' => 'egut', 'Migut.L01953' => 'egut', 'MSTRG.10253' => 'ama', 'MSTRG.19077' => 'ama', 'MSTRG.26780' => 'ama', 'MSTRG.4023' => 'ama', 'MSTRG.5655' => 'ama', 'MSTRG.9992' => 'ama', 'Nitab4.5_0000043g0310' => 'nta', 'Nitab4.5_0000463g0080' => 'nta', 'Nitab4.5_0000705g0170' => 'nta', 'Nitab4.5_0001326g0060' => 'nta', 'Nitab4.5_0001628g0030' => 'nta', 'Nitab4.5_0002103g0110' => 'nta', 'Nitab4.5_0002946g0030' => 'nta', 'Nitab4.5_0004639g0030' => 'nta', 'Nn2g11149' => 'nnu', 'Nn2g13389' => 'nnu', 'Nn4g25326' => 'nnu', 'Nn4g26290' => 'nnu', 'Nn5g29865' => 'nnu', 'Oeu004163.1' => 'oeu', 'Oeu006901.1' => 'oeu', 'Oeu010096.1' => 'oeu', 'Oeu024340.1' => 'oeu', 'Oeu048369.1' => 'oeu', 'Os01g0973000' => 'osa', 'Os03g0273800' => 'osa', 'Os03g0701200' => 'osa', 'Os03g0834050' => 'osa', 'Os07g0634400' => 'osa', 'Peaxi162Scf00092g01414' => 'pax', 'Peaxi162Scf00165g00818' => 'pax', 'Peaxi162Scf00309g00516' => 'pax', 'Peaxi162Scf00774g00218' => 'pax', 'PGR004G1824' => 'pgr', 'PGR004G2606' => 'pgr', 'PGR031G2716' => 'pgr', 'PGR102G2460' => 'pgr', 'PGR142G2599' => 'pgr', 'PGSC0003DMG400000843' => 'stu', 'PGSC0003DMG400008829' => 'stu', 'PGSC0003DMG400030418' => 'stu', 'PGSC0003DMG400031834' => 'stu', 'PGSC0003DMG401028300' => 'stu', 'PGSC0003DMG402028300' => 'stu', 'Phvul.001G219300' => 'pvu', 'Phvul.007G056000' => 'pvu', 'Phvul.007G208000' => 'pvu', 'Phvul.008G119500' => 'pvu', 'Phvul.010G011200' => 'pvu', 'Phvul.010G014800' => 'pvu', 'Phvul.011G062900' => 'pvu', 'Phvul.L007043' => 'pvu', 'Potri.001G242300' => 'ptr', 'Potri.002G185300' => 'ptr', 'Potri.006G086900' => 'ptr', 'Potri.008G151700' => 'ptr', 'Potri.009G033500' => 'ptr', 'Potri.010G089300' => 'ptr', 'Potri.014G110800' => 'ptr', 'Pp3c27_8130' => 'ppa', 'Pp3c6_27410' => 'ppa', 'PRCOL_00001659' => 'pco', 'PRCOL_00001927' => 'pco', 'PRCOL_00003649' => 'pco', 'Prupe.1G011600' => 'ppe', 'Prupe.3G000800' => 'ppe', 'Prupe.3G001100' => 'ppe', 'Prupe.6G072700' => 'ppe', 'Prupe.6G072800' => 'ppe', 'Prupe.6G257300' => 'ppe', 'Prupe.8G033000' => 'ppe', 'Psat0s2633g0080' => 'psa', 'Psat0s3396g0080' => 'psa', 'Psat0s3396g0200' => 'psa', 'Psat3g139080' => 'psa', 'Psat5g285080' => 'psa', 'Psat6g157760' => 'psa', 'Psat6g208440' => 'psa', 'Psat7g215320' => 'psa', 'Psat7g215400' => 'psa', 'Psat7g235600' => 'psa', 'Psat7g235760' => 'psa', 'PSO063G4603' => 'pso', 'PSO210G0182' => 'pso', 'PSO210G0196' => 'pso', 'PSO339G0394' => 'pso', 'PSO339G4127' => 'pso', 'PSO513G0064' => 'pso', 'PSO761G0079' => 'pso', 'QL01p031003' => 'qlo', 'QL01p031078' => 'qlo', 'QL06p003004' => 'qlo', 'QL07p048731' => 'qlo', 'QL09p037427' => 'qlo', 'RcHm_v2.0_Chr3g0466361' => 'rch', 'RcHm_v2.0_Chr3g0485571' => 'rch', 'RcHm_v2.0_Chr4g0416551' => 'rch', 'RcHm_v2.0_Chr5g0065831' => 'rch', 'Rhsim01G0230500' => 'rsi', 'Rhsim05G0194000' => 'rsi', 'Rhsim08G0250400' => 'rsi', 'Sabra02G0131000' => 'sbr', 'Sabra06G0066300' => 'sbr', 'Sabra08G0115500' => 'sbr', 'Sabra09G0023900' => 'sbr', 'Sabra10G0054000' => 'sbr', 'Sabra14G0081500' => 'sbr', 'Sabra16G0147100' => 'sbr', 'SalBow2G2957' => 'sbo', 'SalBow4G3320' => 'sbo', 'SalBow8G1894' => 'sbo', 'Sc07g0007950' => 'sci', 'Sc12g0001360' => 'sci', 'Sc13g0004330' => 'sci', 'Sc20g0005010' => 'sci', 'Sed0000361' => 'sed', 'Sed0001706' => 'sed', 'Sed0002422' => 'sed', 'Sed0004029' => 'sed', 'Sed0004602' => 'sed', 'Sed0004943' => 'sed', 'Sed0008646' => 'sed', 'Sed0023313' => 'sed', 'Sed0024843' => 'sed', 'SEGI_00081' => 'sgi', 'SEGI_00947' => 'sgi', 'SEGI_04046' => 'sgi', 'SEGI_06880' => 'sgi', 'SEGI_09736' => 'sgi', 'SEGI_12741' => 'sgi', 'SEGI_14530' => 'sgi', 'SEGI_20705' => 'sgi', 'SEGI_26088' => 'sgi', 'SEGI_28323' => 'sgi', 'SEGI_33343' => 'sgi', 'SGA_v2.0_scaffold126G33775' => 'sas', 'SGA_v2.0_scaffold2G01337' => 'sas', 'SGA_v2.0_scaffold38G15006' => 'sas', 'SGA_v2.0_scaffold39G15264' => 'sas', 'SGA_v2.0_scaffold453G51880' => 'sas', 'SHI12696' => 'shi', 'SMO367G1096' => 'smo', 'Solyc01g068630.3' => 'sly', 'Solyc05g011880.3' => 'sly', 'Solyc06g076300.3' => 'sly', 'Solyc09g010940.4' => 'sly', 'Solyc09g075890.3' => 'sly', 'Sopen01g030560' => 'spe', 'Sopen05g006630' => 'spe', 'Sopen06g032720' => 'spe', 'Sopen09g005660' => 'spe', 'Sopen09g030690' => 'spe', 'Sp4g14540' => 'spa', 'Sp4g20030' => 'spa', 'Sp5g01320' => 'spa', 'Sp6g21170' => 'spa', 'Sp6g21180' => 'spa', 'Sp6g21190' => 'spa', 'Sp6g40220' => 'spa', 'TAR362G0122' => 'tar', 'TAR362G1338' => 'tar', 'TAR369G0590' => 'tar', 'TAR371G0824' => 'tar', 'TAR622G1429' => 'tar', 'TAR623G0734' => 'tar', 'TAR625G0441' => 'tar', 'TAR629G0976' => 'tar', 'TAR633G1195' => 'tar', 'TAR636G2660' => 'tar', 'THA.LOC104799440' => 'tha', 'THA.LOC104800966' => 'tha', 'THA.LOC104806559' => 'tha', 'THA.LOC104810765' => 'tha', 'THA.LOC104816266' => 'tha', 'THA.LOC104817419' => 'tha', 'THA.LOC104827021' => 'tha', 'Thecc.01G327400' => 'tca', 'Thecc.04G229200' => 'tca', 'Thecc.05G037400' => 'tca', 'Thecc.09G318600' => 'tca', 'Thecc.09G318700' => 'tca', 'Thhalv10006238m.g' => 'esa', 'Thhalv10014321m.g' => 'esa', 'Thhalv10014335m.g' => 'esa', 'Thhalv10015826m.g' => 'esa', 'Thhalv10017107m.g' => 'esa', 'Thhalv10017180m.g' => 'esa', 'Thhalv10029339m.g' => 'esa', 'TPR.G1699' => 'tpr', 'TPR.G23609' => 'tpr', 'TPR.G3081' => 'tpr', 'TPR.G40397' => 'tpr', 'TPR.G5522' => 'tpr', 'TPR.G5618' => 'tpr', 'TPR.G5626' => 'tpr', 'TWI09G1632' => 'twi', 'TWI23G1230' => 'twi', 'TWI53G1064' => 'twi', 'TWI59G0751' => 'twi', 'TWI74G0947' => 'twi', 'TWI77G0337' => 'twi', 'TWI79G1254' => 'twi', 'unitig_0.g2341' => 'ugi', 'unitig_26.g10006' => 'ugi', 'unitig_26.g10008' => 'ugi', 'unitig_26.g9192' => 'ugi', 'vmacro14547' => 'vma', 'vmacro15333' => 'vma', 'vmacro18743' => 'vma', 'vmacro20166' => 'vma', 'VMungo0331G0523' => 'vmu', 'VMungo0331G1202' => 'vmu', 'VMungo0720G1228' => 'vmu', 'VMungo0720G1514' => 'vmu', 'VMungo1080G0169' => 'vmu', 'VMungo1127G1475' => 'vmu', 'VMungo1383G1208' => 'vmu', 'VMungo1383G1698' => 'vmu', 'Zm00001eb012270' => 'zma', 'Zm00001eb054100' => 'zma', 'Zm00001eb063350' => 'zma', 'Zm00001eb328560' => 'zma', 'Zm00001eb342820' => 'zma', 'Zm00001eb362210' => 'zma', 'Zm00001eb397730' => 'zma', 'Zm00001eb399750' => 'zma' ), 'gf_id' => 'HOM05D000959', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000959' ), 'data_identifier' => 'HOM05D000959', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000959', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '622', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p07100' => 'bna', 'A03p11720' => 'bna', 'A05p08300' => 'bna', 'A05p13380' => 'bna', 'A09p54130' => 'bna', 'A10p16690' => 'bna', 'A10p16700' => 'bna', 'A10p33390' => 'bna', 'Aa31LG10G16020' => 'aar', 'Aa31LG1G11810' => 'aar', 'Aa31LG1G11830' => 'aar', 'Aa31LG1G22510' => 'aar', 'Aa31LG5G4890' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5793' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2310' => 'aag', 'Actinidia08499' => 'ach', 'Actinidia11262' => 'ach', 'Actinidia23926' => 'ach', 'Actinidia34420' => 'ach', 'Actinidia36970' => 'ach', 'Ah.02g111220' => 'amhyb', 'Ah.15g097750' => 'amhyb', 'AL4G27500' => 'aly', 'AL6G11470' => 'aly', 'AL8G35950' => 'aly', 'AL8G35960' => 'aly', 'AL8G35970' => 'aly', 'Aqoxy1G00912' => 'aox', 'Aqoxy2G02253' => 'aox', 'Aqoxy2G02411' => 'aox', 'Aqoxy5G00485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BZ66YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K8ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM4FUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6BF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HFV7XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25JBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0YNNV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MAKK6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P70IT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP2Z6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V61LZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YWP64R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3S9AI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7PGHH' => 'arhy', 'AT2G32150' => 'ath', 'AT3G62040' => 'ath', 'AT5G02230' => 'ath', 'AT5G59480' => 'ath', 'AT5G59490' => 'ath', 'ATR0332G060' => 'atr', 'ATR0559G190' => 'atr', 'ATR0693G294' => 'atr', 'Atru.chr3.3975' => 'acertr', 'Atru.chr3.3976' => 'acertr', 'Atru.chr3.3977' => 'acertr', 'Atru.chr4.2498' => 'acertr', 'Atru.chr5.838' => 'acertr', 'Atru.chr8.1990' => 'acertr', 'Atru.chr8.1991' => 'acertr', 'Atru.chr8.1992' => 'acertr', 'AUR62001759' => 'cqu', 'AUR62009545' => 'cqu', 'AUR62010474' => 'cqu', 'AUR62025820' => 'cqu', 'AUR62030422' => 'cqu', 'AUR62033605' => 'cqu', 'AUR62038615' => 'cqu', 'AUR62041347' => 'cqu', 'BcaB01g04574' => 'bca', 'BcaB02g09263' => 'bca', 'BcaB02g10453' => 'bca', 'BcaB05g22513' => 'bca', 'BcaB08g36253' => 'bca', 'BcaB08g36254' => 'bca', 'BcaC01g06519' => 'bca', 'BcaC02g11889' => 'bca', 'BcaC03g14010' => 'bca', 'BcaC03g18439' => 'bca', 'BcaC04g19765' => 'bca', 'BcaC09g48432' => 'bca', 'BcaNung07302' => 'bca', 'BolC2t06040H' => 'bol', 'BolC2t07346H' => 'bol', 'BolC3t13817H' => 'bol', 'BolC4t22625H' => 'bol', 'BolC4t23297H' => 'bol', 'BolC8t51278H' => 'bol', 'BolC9t58050H' => 'bol', 'BolC9t58051H' => 'bol', 'BolC9t60163H' => 'bol', 'BraA02t04712Z' => 'bra', 'BraA02t05791Z' => 'bra', 'BraA03t10483Z' => 'bra', 'BraA05t19795Z' => 'bra', 'BraA05t20276Z' => 'bra', 'BraA09t40827Z' => 'bra', 'BraA10t43750Z' => 'bra', 'BraA10t43751Z' => 'bra', 'BraA10t45370Z' => 'bra', 'C02p00400' => 'bna', 'C02p12460' => 'bna', 'C03p13680' => 'bna', 'C04p10270' => 'bna', 'C04p17500' => 'bna', 'C08p37010' => 'bna', 'C09p51880' => 'bna', 'C09p51890' => 'bna', 'C09p74300' => 'bna', 'CAN.G179.26' => 'can', 'CAN.G3384.1' => 'can', 'CAN.G394.68' => 'can', 'CAN.G907.13' => 'can', 'CANSAT11G0012' => 'cansat', 'CANSAT25G1586' => 'cansat', 'CANSAT35G0735' => 'cansat', 'CANSAT54G0556' => 'cansat', 'CANSAT64G0356' => 'cansat', 'CANSAT78G2042' => 'cansat', 'CARHR125920' => 'chi', 'CARHR131910' => 'chi', 'CARHR172390' => 'chi', 'CARHR211140' => 'chi', 'CARHR285850' => 'chi', 'CARHR285860' => 'chi', 'Carub.0004s1347' => 'cru', 'Carub.0004s1960' => 'cru', 'Carub.0005s2880' => 'cru', 'Carub.0006s0107' => 'cru', 'Carub.0008s2015' => 'cru', 'Carub.0008s2016' => 'cru', 'Carub.0008s2017' => 'cru', 'Ca_01315_v3' => 'car', 'Ca_05063_v3' => 'car', 'Ca_10231_v3' => 'car', 'Ca_10913_v3' => 'car', 'Ca_19156_v3' => 'car', 'Ca_23644_v3' => 'car', 'Ca_26735_v3' => 'car', 'Cc01_g13130' => 'ccan', 'Cc02_g21690' => 'ccan', 'Cc03_g03600' => 'ccan', 'Cc06_g02510' => 'ccan', 'CDE02G1265' => 'cde', 'CDE05G0415' => 'cde', 'CDE08G1082' => 'cde', 'Cfa005780' => 'cfa', 'Cfa011522' => 'cfa', 'Cfa011523' => 'cfa', 'Cfa015627' => 'cfa', 'Cfa017359' => 'cfa', 'Ciclev10005687m.g' => 'ccl', 'Ciclev10012173m.g' => 'ccl', 'Ciclev10021621m.g' => 'ccl', 'Ciclev10028968m.g' => 'ccl', 'Ciclev10029907m.g' => 'ccl', 'CiPaw.01G164800' => 'cil', 'CiPaw.07G083700' => 'cil', 'CiPaw.07G127000' => 'cil', 'CiPaw.07G136900' => 'cil', 'CiPaw.08G081700' => 'cil', 'CiPaw.09G194600' => 'cil', 'CiPaw.10G146500' => 'cil', 'CiPaw.13G091500' => 'cil', 'CiPaw.13G091600' => 'cil', 'ClCG00G003390' => 'cla', 'ClCG01G007220' => 'cla', 'ClCG03G001370' => 'cla', 'ClCG04G008100' => 'cla', 'ClCG06G006110' => 'cla', 'ClCG06G006130' => 'cla', 'ClCG10G021210' => 'cla', 'COL.COLO4_07648' => 'col', 'COL.COLO4_07650' => 'col', 'COL.COLO4_07651' => 'col', 'COL.COLO4_14780' => 'col', 'COL.COLO4_18546' => 'col', 'COL.COLO4_18547' => 'col', 'COL.COLO4_23103' => 'col', 'COL.COLO4_30419' => 'col', 'COL.COLO4_34232' => 'col', 'Cpa.g.sc169.20' => 'cpa', 'Cpa.g.sc57.45' => 'cpa', 'Cpa.g.sc58.124' => 'cpa', 'Cpa.g.sc58.125' => 'cpa', 'Cpa.g.sc81.118' => 'cpa', 'Cpa.g.sc81.119' => 'cpa', 'Cre12.g524700' => 'cre', 'CsaV3_1G034430' => 'csa', 'CsaV3_1G034440' => 'csa', 'CsaV3_1G034450' => 'csa', 'CsaV3_3G034830' => 'csa', 'CsaV3_4G025090' => 'csa', 'CsaV3_5G018660' => 'csa', 'CsaV3_6G038160' => 'csa', 'CSS0003447' => 'camsi', 'CSS0017840' => 'camsi', 'CSS0019260' => 'camsi', 'CSS0040375' => 'camsi', 'CSS0042533' => 'camsi', 'DCAR_005960' => 'dca', 'DCAR_012104' => 'dca', 'DCAR_012105' => 'dca', 'DCAR_012293' => 'dca', 'DCAR_015632' => 'dca', 'DCAR_024602' => 'dca', 'DCAR_028752' => 'dca', 'Dinv06261' => 'din', 'Dinv13982' => 'din', 'Dinv17029' => 'din', 'Dinv18463' => 'din', 'Dinv33181' => 'din', 'Dinv35585' => 'din', 'Dinv37161' => 'din', 'Dinv42977' => 'din', 'Dinv43122' => 'din', 'Dinv44517' => 'din', 'Duzib093G0256' => 'dzi', 'Duzib106G1254' => 'dzi', 'Duzib128G1789' => 'dzi', 'Duzib133G0633' => 'dzi', 'Duzib138G0510' => 'dzi', 'Duzib150G1084' => 'dzi', 'Duzib168G0488' => 'dzi', 'Duzib168G1523' => 'dzi', 'Duzib170G0133' => 'dzi', 'ECA234G1433' => 'eca', 'ECA236G1432' => 'eca', 'ECA236G2256' => 'eca', 'ECA236G2365' => 'eca', 'ECA236G4830' => 'eca', 'ECA248G1505' => 'eca', 'EL10Ac3g06431' => 'bvu', 'EL10Ac5g12577' => 'bvu', 'EL10Ac6g13533' => 'bvu', 'EL10Ac7g16045' => 'bvu', 'Eucgr.A01281' => 'egr', 'Eucgr.B02326' => 'egr', 'Eucgr.H03532' => 'egr', 'Eucgr.K00553' => 'egr', 'Eucgr.K03116' => 'egr', 'FAN02G3963' => 'fan', 'FAN05G0438' => 'fan', 'FAN09G2434' => 'fan', 'FAN12G3984' => 'fan', 'FAN14G0798' => 'fan', 'FAN17G0652' => 'fan', 'FAN19G1988' => 'fan', 'FAN22G0632' => 'fan', 'FAN23G0387' => 'fan', 'FAN26G1323' => 'fan', 'FAN28G0666' => 'fan', 'FvH4_1g26080' => 'fve', 'FvH4_3g36780' => 'fve', 'FvH4_4g15270' => 'fve', 'FvH4_6g13490' => 'fve', 'Glyma.01G098700' => 'gma', 'Glyma.03G065900' => 'gma', 'Glyma.03G073754' => 'gma', 'Glyma.03G073758' => 'gma', 'Glyma.03G083200' => 'gma', 'Glyma.03G225500' => 'gma', 'Glyma.05G037766' => 'gma', 'Glyma.07G133500' => 'gma', 'Glyma.10G139400' => 'gma', 'Glyma.10G248900' => 'gma', 'Glyma.11G137800' => 'gma', 'Glyma.12G061300' => 'gma', 'Glyma.13G337900' => 'gma', 'Glyma.15G036600' => 'gma', 'Glyma.18G182800' => 'gma', 'Glyma.19G222500' => 'gma', 'Glyma.20G144800' => 'gma', 'Gohir.A01G222000' => 'ghi', 'Gohir.A03G044000' => 'ghi', 'Gohir.A03G044100' => 'ghi', 'Gohir.A04G083100' => 'ghi', 'Gohir.A07G127200' => 'ghi', 'Gohir.A07G132400' => 'ghi', 'Gohir.A08G000700' => 'ghi', 'Gohir.A11G327300' => 'ghi', 'Gohir.D01G211500' => 'ghi', 'Gohir.D03G123400' => 'ghi', 'Gohir.D03G123500' => 'ghi', 'Gohir.D04G121800' => 'ghi', 'Gohir.D07G131500' => 'ghi', 'Gohir.D07G136600' => 'ghi', 'Gohir.D08G011600' => 'ghi', 'Gohir.D11G346200' => 'ghi', 'Gorai.001G142800' => 'gra', 'Gorai.001G148700' => 'gra', 'Gorai.002G257300' => 'gra', 'Gorai.003G130000' => 'gra', 'Gorai.003G130100' => 'gra', 'Gorai.004G005300' => 'gra', 'Gorai.007G376500' => 'gra', 'Gorai.012G104700' => 'gra', 'GSVIVG01017946001' => 'vvi', 'GSVIVG01024928001' => 'vvi', 'GSVIVG01028227001' => 'vvi', 'GSVIVG01034151001' => 'vvi', 'HanXRQChr05g0135031' => 'han', 'HanXRQChr05g0135041' => 'han', 'HanXRQChr05g0140021' => 'han', 'HanXRQChr06g0178981' => 'han', 'HanXRQChr07g0188251' => 'han', 'HanXRQChr08g0235311' => 'han', 'HanXRQChr09g0271011' => 'han', 'HanXRQChr10g0293321' => 'han', 'HanXRQChr13g0388171' => 'han', 'Haze_00916' => 'cav', 'Haze_05063' => 'cav', 'Haze_20814' => 'cav', 'Haze_24128' => 'cav', 'Hma1.2p1_0745F.1_g212010' => 'hma', 'Hma1.2p1_0757F.1_g213260' => 'hma', 'Hma1.2p1_0936F.1_g238840' => 'hma', 'Hma1.2p1_1735F.1_g299890' => 'hma', 'Hma1.2p1_1861F.1_g305685' => 'hma', 'HPP92_003397' => 'vpl', 'HPP92_012597' => 'vpl', 'HPP92_015520' => 'vpl', 'HPP92_015539' => 'vpl', 'HPP92_020373' => 'vpl', 'Hund04938' => 'sun', 'Hund10677' => 'sun', 'Hund11033' => 'sun', 'Hund12155' => 'sun', 'Lalb_Chr01g0022551' => 'lal', 'Lalb_Chr03g0042341' => 'lal', 'Lalb_Chr07g0192931' => 'lal', 'Lalb_Chr12g0209551' => 'lal', 'Lalb_Chr19g0125251' => 'lal', 'Lalb_Chr19g0137891' => 'lal', 'Lalb_Chr21g0304641' => 'lal', 'Lalb_Chr21g0309881' => 'lal', 'Lj1A5T12' => 'lonja', 'Lj1C148G10' => 'lonja', 'Lj2A93T83' => 'lonja', 'Lj3A738G68' => 'lonja', 'Lj3C966T1' => 'lonja', 'Lj3g0018958' => 'lja', 'Lj3g0021831' => 'lja', 'Lj3g0025443' => 'lja', 'Lj4g0026809' => 'lja', 'Lj5g0012558' => 'lja', 'Lj5g0021586' => 'lja', 'Lsat_1_v5_gn_5_156840' => 'lsa', 'Lsat_1_v5_gn_8_73460' => 'lsa', 'Lsat_1_v5_gn_8_73481' => 'lsa', 'Lsat_1_v5_gn_9_31601' => 'lsa', 'Lsat_1_v5_gn_9_77320' => 'lsa', 'Manes.01G171300' => 'mes', 'Manes.01G171400' => 'mes', 'Manes.01G236100' => 'mes', 'Manes.02G130500' => 'mes', 'Manes.02G130600' => 'mes', 'Manes.03G180200' => 'mes', 'Manes.05G007000' => 'mes', 'Manes.08G084400' => 'mes', 'Manes.09G092600' => 'mes', 'Manes.15G027900' => 'mes', 'MBI04_g40948_MAGBIO' => 'mbi', 'MBI14_g12123_MAGBIO' => 'mbi', 'MBI18_g28915_MAGBIO' => 'mbi', 'MCO09G053' => 'mco', 'MCO11G782' => 'mco', 'MCO15G215' => 'mco', 'MD03G1088500' => 'mdo', 'MD03G1088600' => 'mdo', 'MD04G1130800' => 'mdo', 'MD09G1291700' => 'mdo', 'MD11G1097500' => 'mdo', 'MD11G1097600' => 'mdo', 'MD12G1143900' => 'mdo', 'MD13G1191400' => 'mdo', 'MD16G1191500' => 'mdo', 'Medtr1g085570' => 'mtr', 'Medtr1g104610' => 'mtr', 'Medtr2g097520' => 'mtr', 'Medtr4g021800' => 'mtr', 'Medtr4g021825' => 'mtr', 'Medtr4g064270' => 'mtr', 'Medtr4g064380' => 'mtr', 'Medtr7g062150' => 'mtr', 'MELO3C003138.2' => 'cme', 'MELO3C005187.2' => 'cme', 'MELO3C009252.2' => 'cme', 'MELO3C014481.2' => 'cme', 'MELO3C020616.2' => 'cme', 'MELO3C020617.2' => 'cme', 'MELO3C020618.2' => 'cme', 'Migut.G00328' => 'egut', 'Migut.J00320' => 'egut', 'Migut.L01000' => 'egut', 'Migut.L01953' => 'egut', 'MSTRG.10253' => 'ama', 'MSTRG.19077' => 'ama', 'MSTRG.26780' => 'ama', 'MSTRG.4023' => 'ama', 'MSTRG.5655' => 'ama', 'MSTRG.9992' => 'ama', 'Nitab4.5_0000043g0310' => 'nta', 'Nitab4.5_0000463g0080' => 'nta', 'Nitab4.5_0000705g0170' => 'nta', 'Nitab4.5_0001326g0060' => 'nta', 'Nitab4.5_0001628g0030' => 'nta', 'Nitab4.5_0002103g0110' => 'nta', 'Nitab4.5_0002946g0030' => 'nta', 'Nitab4.5_0004639g0030' => 'nta', 'Nn2g11149' => 'nnu', 'Nn2g13389' => 'nnu', 'Nn4g25326' => 'nnu', 'Nn4g26290' => 'nnu', 'Nn5g29865' => 'nnu', 'Oeu004163.1' => 'oeu', 'Oeu006901.1' => 'oeu', 'Oeu010096.1' => 'oeu', 'Oeu024340.1' => 'oeu', 'Oeu048369.1' => 'oeu', 'Os01g0973000' => 'osa', 'Os03g0273800' => 'osa', 'Os03g0701200' => 'osa', 'Os03g0834050' => 'osa', 'Os07g0634400' => 'osa', 'Peaxi162Scf00092g01414' => 'pax', 'Peaxi162Scf00165g00818' => 'pax', 'Peaxi162Scf00309g00516' => 'pax', 'Peaxi162Scf00774g00218' => 'pax', 'PGR004G1824' => 'pgr', 'PGR004G2606' => 'pgr', 'PGR031G2716' => 'pgr', 'PGR102G2460' => 'pgr', 'PGR142G2599' => 'pgr', 'PGSC0003DMG400000843' => 'stu', 'PGSC0003DMG400008829' => 'stu', 'PGSC0003DMG400030418' => 'stu', 'PGSC0003DMG400031834' => 'stu', 'PGSC0003DMG401028300' => 'stu', 'PGSC0003DMG402028300' => 'stu', 'Phvul.001G219300' => 'pvu', 'Phvul.007G056000' => 'pvu', 'Phvul.007G208000' => 'pvu', 'Phvul.008G119500' => 'pvu', 'Phvul.010G011200' => 'pvu', 'Phvul.010G014800' => 'pvu', 'Phvul.011G062900' => 'pvu', 'Phvul.L007043' => 'pvu', 'Potri.001G242300' => 'ptr', 'Potri.002G185300' => 'ptr', 'Potri.006G086900' => 'ptr', 'Potri.008G151700' => 'ptr', 'Potri.009G033500' => 'ptr', 'Potri.010G089300' => 'ptr', 'Potri.014G110800' => 'ptr', 'Pp3c27_8130' => 'ppa', 'Pp3c6_27410' => 'ppa', 'PRCOL_00001659' => 'pco', 'PRCOL_00001927' => 'pco', 'PRCOL_00003649' => 'pco', 'Prupe.1G011600' => 'ppe', 'Prupe.3G000800' => 'ppe', 'Prupe.3G001100' => 'ppe', 'Prupe.6G072700' => 'ppe', 'Prupe.6G072800' => 'ppe', 'Prupe.6G257300' => 'ppe', 'Prupe.8G033000' => 'ppe', 'Psat0s2633g0080' => 'psa', 'Psat0s3396g0080' => 'psa', 'Psat0s3396g0200' => 'psa', 'Psat3g139080' => 'psa', 'Psat5g285080' => 'psa', 'Psat6g157760' => 'psa', 'Psat6g208440' => 'psa', 'Psat7g215320' => 'psa', 'Psat7g215400' => 'psa', 'Psat7g235600' => 'psa', 'Psat7g235760' => 'psa', 'PSO063G4603' => 'pso', 'PSO210G0182' => 'pso', 'PSO210G0196' => 'pso', 'PSO339G0394' => 'pso', 'PSO339G4127' => 'pso', 'PSO513G0064' => 'pso', 'PSO761G0079' => 'pso', 'QL01p031003' => 'qlo', 'QL01p031078' => 'qlo', 'QL06p003004' => 'qlo', 'QL07p048731' => 'qlo', 'QL09p037427' => 'qlo', 'RcHm_v2.0_Chr3g0466361' => 'rch', 'RcHm_v2.0_Chr3g0485571' => 'rch', 'RcHm_v2.0_Chr4g0416551' => 'rch', 'RcHm_v2.0_Chr5g0065831' => 'rch', 'Rhsim01G0230500' => 'rsi', 'Rhsim05G0194000' => 'rsi', 'Rhsim08G0250400' => 'rsi', 'Sabra02G0131000' => 'sbr', 'Sabra06G0066300' => 'sbr', 'Sabra08G0115500' => 'sbr', 'Sabra09G0023900' => 'sbr', 'Sabra10G0054000' => 'sbr', 'Sabra14G0081500' => 'sbr', 'Sabra16G0147100' => 'sbr', 'SalBow2G2957' => 'sbo', 'SalBow4G3320' => 'sbo', 'SalBow8G1894' => 'sbo', 'Sc07g0007950' => 'sci', 'Sc12g0001360' => 'sci', 'Sc13g0004330' => 'sci', 'Sc20g0005010' => 'sci', 'Sed0000361' => 'sed', 'Sed0001706' => 'sed', 'Sed0002422' => 'sed', 'Sed0004029' => 'sed', 'Sed0004602' => 'sed', 'Sed0004943' => 'sed', 'Sed0008646' => 'sed', 'Sed0023313' => 'sed', 'Sed0024843' => 'sed', 'SEGI_00081' => 'sgi', 'SEGI_00947' => 'sgi', 'SEGI_04046' => 'sgi', 'SEGI_06880' => 'sgi', 'SEGI_09736' => 'sgi', 'SEGI_12741' => 'sgi', 'SEGI_14530' => 'sgi', 'SEGI_20705' => 'sgi', 'SEGI_26088' => 'sgi', 'SEGI_28323' => 'sgi', 'SEGI_33343' => 'sgi', 'SGA_v2.0_scaffold126G33775' => 'sas', 'SGA_v2.0_scaffold2G01337' => 'sas', 'SGA_v2.0_scaffold38G15006' => 'sas', 'SGA_v2.0_scaffold39G15264' => 'sas', 'SGA_v2.0_scaffold453G51880' => 'sas', 'SHI12696' => 'shi', 'SMO367G1096' => 'smo', 'Solyc01g068630.3' => 'sly', 'Solyc05g011880.3' => 'sly', 'Solyc06g076300.3' => 'sly', 'Solyc09g010940.4' => 'sly', 'Solyc09g075890.3' => 'sly', 'Sopen01g030560' => 'spe', 'Sopen05g006630' => 'spe', 'Sopen06g032720' => 'spe', 'Sopen09g005660' => 'spe', 'Sopen09g030690' => 'spe', 'Sp4g14540' => 'spa', 'Sp4g20030' => 'spa', 'Sp5g01320' => 'spa', 'Sp6g21170' => 'spa', 'Sp6g21180' => 'spa', 'Sp6g21190' => 'spa', 'Sp6g40220' => 'spa', 'TAR362G0122' => 'tar', 'TAR362G1338' => 'tar', 'TAR369G0590' => 'tar', 'TAR371G0824' => 'tar', 'TAR622G1429' => 'tar', 'TAR623G0734' => 'tar', 'TAR625G0441' => 'tar', 'TAR629G0976' => 'tar', 'TAR633G1195' => 'tar', 'TAR636G2660' => 'tar', 'THA.LOC104799440' => 'tha', 'THA.LOC104800966' => 'tha', 'THA.LOC104806559' => 'tha', 'THA.LOC104810765' => 'tha', 'THA.LOC104816266' => 'tha', 'THA.LOC104817419' => 'tha', 'THA.LOC104827021' => 'tha', 'Thecc.01G327400' => 'tca', 'Thecc.04G229200' => 'tca', 'Thecc.05G037400' => 'tca', 'Thecc.09G318600' => 'tca', 'Thecc.09G318700' => 'tca', 'Thhalv10006238m.g' => 'esa', 'Thhalv10014321m.g' => 'esa', 'Thhalv10014335m.g' => 'esa', 'Thhalv10015826m.g' => 'esa', 'Thhalv10017107m.g' => 'esa', 'Thhalv10017180m.g' => 'esa', 'Thhalv10029339m.g' => 'esa', 'TPR.G1699' => 'tpr', 'TPR.G23609' => 'tpr', 'TPR.G3081' => 'tpr', 'TPR.G40397' => 'tpr', 'TPR.G5522' => 'tpr', 'TPR.G5618' => 'tpr', 'TPR.G5626' => 'tpr', 'TWI09G1632' => 'twi', 'TWI23G1230' => 'twi', 'TWI53G1064' => 'twi', 'TWI59G0751' => 'twi', 'TWI74G0947' => 'twi', 'TWI77G0337' => 'twi', 'TWI79G1254' => 'twi', 'unitig_0.g2341' => 'ugi', 'unitig_26.g10006' => 'ugi', 'unitig_26.g10008' => 'ugi', 'unitig_26.g9192' => 'ugi', 'vmacro14547' => 'vma', 'vmacro15333' => 'vma', 'vmacro18743' => 'vma', 'vmacro20166' => 'vma', 'VMungo0331G0523' => 'vmu', 'VMungo0331G1202' => 'vmu', 'VMungo0720G1228' => 'vmu', 'VMungo0720G1514' => 'vmu', 'VMungo1080G0169' => 'vmu', 'VMungo1127G1475' => 'vmu', 'VMungo1383G1208' => 'vmu', 'VMungo1383G1698' => 'vmu', 'Zm00001eb012270' => 'zma', 'Zm00001eb054100' => 'zma', 'Zm00001eb063350' => 'zma', 'Zm00001eb328560' => 'zma', 'Zm00001eb342820' => 'zma', 'Zm00001eb362210' => 'zma', 'Zm00001eb397730' => 'zma', 'Zm00001eb399750' => 'zma' ) $gf_id = 'HOM05D000959' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000959' ) $data_identifier = 'HOM05D000959' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 5, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 5, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 10, 'mbi' => (int) 3, 'mco' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 2, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 3, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 11, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399750' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000959', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '622', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p07100' => 'bna', 'A03p11720' => 'bna', 'A05p08300' => 'bna', 'A05p13380' => 'bna', 'A09p54130' => 'bna', 'A10p16690' => 'bna', 'A10p16700' => 'bna', 'A10p33390' => 'bna', 'Aa31LG10G16020' => 'aar', 'Aa31LG1G11810' => 'aar', 'Aa31LG1G11830' => 'aar', 'Aa31LG1G22510' => 'aar', 'Aa31LG5G4890' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5793' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2310' => 'aag', 'Actinidia08499' => 'ach', 'Actinidia11262' => 'ach', 'Actinidia23926' => 'ach', 'Actinidia34420' => 'ach', 'Actinidia36970' => 'ach', 'Ah.02g111220' => 'amhyb', 'Ah.15g097750' => 'amhyb', 'AL4G27500' => 'aly', 'AL6G11470' => 'aly', 'AL8G35950' => 'aly', 'AL8G35960' => 'aly', 'AL8G35970' => 'aly', 'Aqoxy1G00912' => 'aox', 'Aqoxy2G02253' => 'aox', 'Aqoxy2G02411' => 'aox', 'Aqoxy5G00485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BZ66YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K8ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM4FUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6BF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HFV7XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25JBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0YNNV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MAKK6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P70IT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP2Z6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V61LZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YWP64R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3S9AI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7PGHH' => 'arhy', 'AT2G32150' => 'ath', 'AT3G62040' => 'ath', 'AT5G02230' => 'ath', 'AT5G59480' => 'ath', 'AT5G59490' => 'ath', 'ATR0332G060' => 'atr', 'ATR0559G190' => 'atr', 'ATR0693G294' => 'atr', 'Atru.chr3.3975' => 'acertr', 'Atru.chr3.3976' => 'acertr', 'Atru.chr3.3977' => 'acertr', 'Atru.chr4.2498' => 'acertr', 'Atru.chr5.838' => 'acertr', 'Atru.chr8.1990' => 'acertr', 'Atru.chr8.1991' => 'acertr', 'Atru.chr8.1992' => 'acertr', 'AUR62001759' => 'cqu', 'AUR62009545' => 'cqu', 'AUR62010474' => 'cqu', 'AUR62025820' => 'cqu', 'AUR62030422' => 'cqu', 'AUR62033605' => 'cqu', 'AUR62038615' => 'cqu', 'AUR62041347' => 'cqu', 'BcaB01g04574' => 'bca', 'BcaB02g09263' => 'bca', 'BcaB02g10453' => 'bca', 'BcaB05g22513' => 'bca', 'BcaB08g36253' => 'bca', 'BcaB08g36254' => 'bca', 'BcaC01g06519' => 'bca', 'BcaC02g11889' => 'bca', 'BcaC03g14010' => 'bca', 'BcaC03g18439' => 'bca', 'BcaC04g19765' => 'bca', 'BcaC09g48432' => 'bca', 'BcaNung07302' => 'bca', 'BolC2t06040H' => 'bol', 'BolC2t07346H' => 'bol', 'BolC3t13817H' => 'bol', 'BolC4t22625H' => 'bol', 'BolC4t23297H' => 'bol', 'BolC8t51278H' => 'bol', 'BolC9t58050H' => 'bol', 'BolC9t58051H' => 'bol', 'BolC9t60163H' => 'bol', 'BraA02t04712Z' => 'bra', 'BraA02t05791Z' => 'bra', 'BraA03t10483Z' => 'bra', 'BraA05t19795Z' => 'bra', 'BraA05t20276Z' => 'bra', 'BraA09t40827Z' => 'bra', 'BraA10t43750Z' => 'bra', 'BraA10t43751Z' => 'bra', 'BraA10t45370Z' => 'bra', 'C02p00400' => 'bna', 'C02p12460' => 'bna', 'C03p13680' => 'bna', 'C04p10270' => 'bna', 'C04p17500' => 'bna', 'C08p37010' => 'bna', 'C09p51880' => 'bna', 'C09p51890' => 'bna', 'C09p74300' => 'bna', 'CAN.G179.26' => 'can', 'CAN.G3384.1' => 'can', 'CAN.G394.68' => 'can', 'CAN.G907.13' => 'can', 'CANSAT11G0012' => 'cansat', 'CANSAT25G1586' => 'cansat', 'CANSAT35G0735' => 'cansat', 'CANSAT54G0556' => 'cansat', 'CANSAT64G0356' => 'cansat', 'CANSAT78G2042' => 'cansat', 'CARHR125920' => 'chi', 'CARHR131910' => 'chi', 'CARHR172390' => 'chi', 'CARHR211140' => 'chi', 'CARHR285850' => 'chi', 'CARHR285860' => 'chi', 'Carub.0004s1347' => 'cru', 'Carub.0004s1960' => 'cru', 'Carub.0005s2880' => 'cru', 'Carub.0006s0107' => 'cru', 'Carub.0008s2015' => 'cru', 'Carub.0008s2016' => 'cru', 'Carub.0008s2017' => 'cru', 'Ca_01315_v3' => 'car', 'Ca_05063_v3' => 'car', 'Ca_10231_v3' => 'car', 'Ca_10913_v3' => 'car', 'Ca_19156_v3' => 'car', 'Ca_23644_v3' => 'car', 'Ca_26735_v3' => 'car', 'Cc01_g13130' => 'ccan', 'Cc02_g21690' => 'ccan', 'Cc03_g03600' => 'ccan', 'Cc06_g02510' => 'ccan', 'CDE02G1265' => 'cde', 'CDE05G0415' => 'cde', 'CDE08G1082' => 'cde', 'Cfa005780' => 'cfa', 'Cfa011522' => 'cfa', 'Cfa011523' => 'cfa', 'Cfa015627' => 'cfa', 'Cfa017359' => 'cfa', 'Ciclev10005687m.g' => 'ccl', 'Ciclev10012173m.g' => 'ccl', 'Ciclev10021621m.g' => 'ccl', 'Ciclev10028968m.g' => 'ccl', 'Ciclev10029907m.g' => 'ccl', 'CiPaw.01G164800' => 'cil', 'CiPaw.07G083700' => 'cil', 'CiPaw.07G127000' => 'cil', 'CiPaw.07G136900' => 'cil', 'CiPaw.08G081700' => 'cil', 'CiPaw.09G194600' => 'cil', 'CiPaw.10G146500' => 'cil', 'CiPaw.13G091500' => 'cil', 'CiPaw.13G091600' => 'cil', 'ClCG00G003390' => 'cla', 'ClCG01G007220' => 'cla', 'ClCG03G001370' => 'cla', 'ClCG04G008100' => 'cla', 'ClCG06G006110' => 'cla', 'ClCG06G006130' => 'cla', 'ClCG10G021210' => 'cla', 'COL.COLO4_07648' => 'col', 'COL.COLO4_07650' => 'col', 'COL.COLO4_07651' => 'col', 'COL.COLO4_14780' => 'col', 'COL.COLO4_18546' => 'col', 'COL.COLO4_18547' => 'col', 'COL.COLO4_23103' => 'col', 'COL.COLO4_30419' => 'col', 'COL.COLO4_34232' => 'col', 'Cpa.g.sc169.20' => 'cpa', 'Cpa.g.sc57.45' => 'cpa', 'Cpa.g.sc58.124' => 'cpa', 'Cpa.g.sc58.125' => 'cpa', 'Cpa.g.sc81.118' => 'cpa', 'Cpa.g.sc81.119' => 'cpa', 'Cre12.g524700' => 'cre', 'CsaV3_1G034430' => 'csa', 'CsaV3_1G034440' => 'csa', 'CsaV3_1G034450' => 'csa', 'CsaV3_3G034830' => 'csa', 'CsaV3_4G025090' => 'csa', 'CsaV3_5G018660' => 'csa', 'CsaV3_6G038160' => 'csa', 'CSS0003447' => 'camsi', 'CSS0017840' => 'camsi', 'CSS0019260' => 'camsi', 'CSS0040375' => 'camsi', 'CSS0042533' => 'camsi', 'DCAR_005960' => 'dca', 'DCAR_012104' => 'dca', 'DCAR_012105' => 'dca', 'DCAR_012293' => 'dca', 'DCAR_015632' => 'dca', 'DCAR_024602' => 'dca', 'DCAR_028752' => 'dca', 'Dinv06261' => 'din', 'Dinv13982' => 'din', 'Dinv17029' => 'din', 'Dinv18463' => 'din', 'Dinv33181' => 'din', 'Dinv35585' => 'din', 'Dinv37161' => 'din', 'Dinv42977' => 'din', 'Dinv43122' => 'din', 'Dinv44517' => 'din', 'Duzib093G0256' => 'dzi', 'Duzib106G1254' => 'dzi', 'Duzib128G1789' => 'dzi', 'Duzib133G0633' => 'dzi', 'Duzib138G0510' => 'dzi', 'Duzib150G1084' => 'dzi', 'Duzib168G0488' => 'dzi', 'Duzib168G1523' => 'dzi', 'Duzib170G0133' => 'dzi', 'ECA234G1433' => 'eca', 'ECA236G1432' => 'eca', 'ECA236G2256' => 'eca', 'ECA236G2365' => 'eca', 'ECA236G4830' => 'eca', 'ECA248G1505' => 'eca', 'EL10Ac3g06431' => 'bvu', 'EL10Ac5g12577' => 'bvu', 'EL10Ac6g13533' => 'bvu', 'EL10Ac7g16045' => 'bvu', 'Eucgr.A01281' => 'egr', 'Eucgr.B02326' => 'egr', 'Eucgr.H03532' => 'egr', 'Eucgr.K00553' => 'egr', 'Eucgr.K03116' => 'egr', 'FAN02G3963' => 'fan', 'FAN05G0438' => 'fan', 'FAN09G2434' => 'fan', 'FAN12G3984' => 'fan', 'FAN14G0798' => 'fan', 'FAN17G0652' => 'fan', 'FAN19G1988' => 'fan', 'FAN22G0632' => 'fan', 'FAN23G0387' => 'fan', 'FAN26G1323' => 'fan', 'FAN28G0666' => 'fan', 'FvH4_1g26080' => 'fve', 'FvH4_3g36780' => 'fve', 'FvH4_4g15270' => 'fve', 'FvH4_6g13490' => 'fve', 'Glyma.01G098700' => 'gma', 'Glyma.03G065900' => 'gma', 'Glyma.03G073754' => 'gma', 'Glyma.03G073758' => 'gma', 'Glyma.03G083200' => 'gma', 'Glyma.03G225500' => 'gma', 'Glyma.05G037766' => 'gma', 'Glyma.07G133500' => 'gma', 'Glyma.10G139400' => 'gma', 'Glyma.10G248900' => 'gma', 'Glyma.11G137800' => 'gma', 'Glyma.12G061300' => 'gma', 'Glyma.13G337900' => 'gma', 'Glyma.15G036600' => 'gma', 'Glyma.18G182800' => 'gma', 'Glyma.19G222500' => 'gma', 'Glyma.20G144800' => 'gma', 'Gohir.A01G222000' => 'ghi', 'Gohir.A03G044000' => 'ghi', 'Gohir.A03G044100' => 'ghi', 'Gohir.A04G083100' => 'ghi', 'Gohir.A07G127200' => 'ghi', 'Gohir.A07G132400' => 'ghi', 'Gohir.A08G000700' => 'ghi', 'Gohir.A11G327300' => 'ghi', 'Gohir.D01G211500' => 'ghi', 'Gohir.D03G123400' => 'ghi', 'Gohir.D03G123500' => 'ghi', 'Gohir.D04G121800' => 'ghi', 'Gohir.D07G131500' => 'ghi', 'Gohir.D07G136600' => 'ghi', 'Gohir.D08G011600' => 'ghi', 'Gohir.D11G346200' => 'ghi', 'Gorai.001G142800' => 'gra', 'Gorai.001G148700' => 'gra', 'Gorai.002G257300' => 'gra', 'Gorai.003G130000' => 'gra', 'Gorai.003G130100' => 'gra', 'Gorai.004G005300' => 'gra', 'Gorai.007G376500' => 'gra', 'Gorai.012G104700' => 'gra', 'GSVIVG01017946001' => 'vvi', 'GSVIVG01024928001' => 'vvi', 'GSVIVG01028227001' => 'vvi', 'GSVIVG01034151001' => 'vvi', 'HanXRQChr05g0135031' => 'han', 'HanXRQChr05g0135041' => 'han', 'HanXRQChr05g0140021' => 'han', 'HanXRQChr06g0178981' => 'han', 'HanXRQChr07g0188251' => 'han', 'HanXRQChr08g0235311' => 'han', 'HanXRQChr09g0271011' => 'han', 'HanXRQChr10g0293321' => 'han', 'HanXRQChr13g0388171' => 'han', 'Haze_00916' => 'cav', 'Haze_05063' => 'cav', 'Haze_20814' => 'cav', 'Haze_24128' => 'cav', 'Hma1.2p1_0745F.1_g212010' => 'hma', 'Hma1.2p1_0757F.1_g213260' => 'hma', 'Hma1.2p1_0936F.1_g238840' => 'hma', 'Hma1.2p1_1735F.1_g299890' => 'hma', 'Hma1.2p1_1861F.1_g305685' => 'hma', 'HPP92_003397' => 'vpl', 'HPP92_012597' => 'vpl', 'HPP92_015520' => 'vpl', 'HPP92_015539' => 'vpl', 'HPP92_020373' => 'vpl', 'Hund04938' => 'sun', 'Hund10677' => 'sun', 'Hund11033' => 'sun', 'Hund12155' => 'sun', 'Lalb_Chr01g0022551' => 'lal', 'Lalb_Chr03g0042341' => 'lal', 'Lalb_Chr07g0192931' => 'lal', 'Lalb_Chr12g0209551' => 'lal', 'Lalb_Chr19g0125251' => 'lal', 'Lalb_Chr19g0137891' => 'lal', 'Lalb_Chr21g0304641' => 'lal', 'Lalb_Chr21g0309881' => 'lal', 'Lj1A5T12' => 'lonja', 'Lj1C148G10' => 'lonja', 'Lj2A93T83' => 'lonja', 'Lj3A738G68' => 'lonja', 'Lj3C966T1' => 'lonja', 'Lj3g0018958' => 'lja', 'Lj3g0021831' => 'lja', 'Lj3g0025443' => 'lja', 'Lj4g0026809' => 'lja', 'Lj5g0012558' => 'lja', 'Lj5g0021586' => 'lja', 'Lsat_1_v5_gn_5_156840' => 'lsa', 'Lsat_1_v5_gn_8_73460' => 'lsa', 'Lsat_1_v5_gn_8_73481' => 'lsa', 'Lsat_1_v5_gn_9_31601' => 'lsa', 'Lsat_1_v5_gn_9_77320' => 'lsa', 'Manes.01G171300' => 'mes', 'Manes.01G171400' => 'mes', 'Manes.01G236100' => 'mes', 'Manes.02G130500' => 'mes', 'Manes.02G130600' => 'mes', 'Manes.03G180200' => 'mes', 'Manes.05G007000' => 'mes', 'Manes.08G084400' => 'mes', 'Manes.09G092600' => 'mes', 'Manes.15G027900' => 'mes', 'MBI04_g40948_MAGBIO' => 'mbi', 'MBI14_g12123_MAGBIO' => 'mbi', 'MBI18_g28915_MAGBIO' => 'mbi', 'MCO09G053' => 'mco', 'MCO11G782' => 'mco', 'MCO15G215' => 'mco', 'MD03G1088500' => 'mdo', 'MD03G1088600' => 'mdo', 'MD04G1130800' => 'mdo', 'MD09G1291700' => 'mdo', 'MD11G1097500' => 'mdo', 'MD11G1097600' => 'mdo', 'MD12G1143900' => 'mdo', 'MD13G1191400' => 'mdo', 'MD16G1191500' => 'mdo', 'Medtr1g085570' => 'mtr', 'Medtr1g104610' => 'mtr', 'Medtr2g097520' => 'mtr', 'Medtr4g021800' => 'mtr', 'Medtr4g021825' => 'mtr', 'Medtr4g064270' => 'mtr', 'Medtr4g064380' => 'mtr', 'Medtr7g062150' => 'mtr', 'MELO3C003138.2' => 'cme', 'MELO3C005187.2' => 'cme', 'MELO3C009252.2' => 'cme', 'MELO3C014481.2' => 'cme', 'MELO3C020616.2' => 'cme', 'MELO3C020617.2' => 'cme', 'MELO3C020618.2' => 'cme', 'Migut.G00328' => 'egut', 'Migut.J00320' => 'egut', 'Migut.L01000' => 'egut', 'Migut.L01953' => 'egut', 'MSTRG.10253' => 'ama', 'MSTRG.19077' => 'ama', 'MSTRG.26780' => 'ama', 'MSTRG.4023' => 'ama', 'MSTRG.5655' => 'ama', 'MSTRG.9992' => 'ama', 'Nitab4.5_0000043g0310' => 'nta', 'Nitab4.5_0000463g0080' => 'nta', 'Nitab4.5_0000705g0170' => 'nta', 'Nitab4.5_0001326g0060' => 'nta', 'Nitab4.5_0001628g0030' => 'nta', 'Nitab4.5_0002103g0110' => 'nta', 'Nitab4.5_0002946g0030' => 'nta', 'Nitab4.5_0004639g0030' => 'nta', 'Nn2g11149' => 'nnu', 'Nn2g13389' => 'nnu', 'Nn4g25326' => 'nnu', 'Nn4g26290' => 'nnu', 'Nn5g29865' => 'nnu', 'Oeu004163.1' => 'oeu', 'Oeu006901.1' => 'oeu', 'Oeu010096.1' => 'oeu', 'Oeu024340.1' => 'oeu', 'Oeu048369.1' => 'oeu', 'Os01g0973000' => 'osa', 'Os03g0273800' => 'osa', 'Os03g0701200' => 'osa', 'Os03g0834050' => 'osa', 'Os07g0634400' => 'osa', 'Peaxi162Scf00092g01414' => 'pax', 'Peaxi162Scf00165g00818' => 'pax', 'Peaxi162Scf00309g00516' => 'pax', 'Peaxi162Scf00774g00218' => 'pax', 'PGR004G1824' => 'pgr', 'PGR004G2606' => 'pgr', 'PGR031G2716' => 'pgr', 'PGR102G2460' => 'pgr', 'PGR142G2599' => 'pgr', 'PGSC0003DMG400000843' => 'stu', 'PGSC0003DMG400008829' => 'stu', 'PGSC0003DMG400030418' => 'stu', 'PGSC0003DMG400031834' => 'stu', 'PGSC0003DMG401028300' => 'stu', 'PGSC0003DMG402028300' => 'stu', 'Phvul.001G219300' => 'pvu', 'Phvul.007G056000' => 'pvu', 'Phvul.007G208000' => 'pvu', 'Phvul.008G119500' => 'pvu', 'Phvul.010G011200' => 'pvu', 'Phvul.010G014800' => 'pvu', 'Phvul.011G062900' => 'pvu', 'Phvul.L007043' => 'pvu', 'Potri.001G242300' => 'ptr', 'Potri.002G185300' => 'ptr', 'Potri.006G086900' => 'ptr', 'Potri.008G151700' => 'ptr', 'Potri.009G033500' => 'ptr', 'Potri.010G089300' => 'ptr', 'Potri.014G110800' => 'ptr', 'Pp3c27_8130' => 'ppa', 'Pp3c6_27410' => 'ppa', 'PRCOL_00001659' => 'pco', 'PRCOL_00001927' => 'pco', 'PRCOL_00003649' => 'pco', 'Prupe.1G011600' => 'ppe', 'Prupe.3G000800' => 'ppe', 'Prupe.3G001100' => 'ppe', 'Prupe.6G072700' => 'ppe', 'Prupe.6G072800' => 'ppe', 'Prupe.6G257300' => 'ppe', 'Prupe.8G033000' => 'ppe', 'Psat0s2633g0080' => 'psa', 'Psat0s3396g0080' => 'psa', 'Psat0s3396g0200' => 'psa', 'Psat3g139080' => 'psa', 'Psat5g285080' => 'psa', 'Psat6g157760' => 'psa', 'Psat6g208440' => 'psa', 'Psat7g215320' => 'psa', 'Psat7g215400' => 'psa', 'Psat7g235600' => 'psa', 'Psat7g235760' => 'psa', 'PSO063G4603' => 'pso', 'PSO210G0182' => 'pso', 'PSO210G0196' => 'pso', 'PSO339G0394' => 'pso', 'PSO339G4127' => 'pso', 'PSO513G0064' => 'pso', 'PSO761G0079' => 'pso', 'QL01p031003' => 'qlo', 'QL01p031078' => 'qlo', 'QL06p003004' => 'qlo', 'QL07p048731' => 'qlo', 'QL09p037427' => 'qlo', 'RcHm_v2.0_Chr3g0466361' => 'rch', 'RcHm_v2.0_Chr3g0485571' => 'rch', 'RcHm_v2.0_Chr4g0416551' => 'rch', 'RcHm_v2.0_Chr5g0065831' => 'rch', 'Rhsim01G0230500' => 'rsi', 'Rhsim05G0194000' => 'rsi', 'Rhsim08G0250400' => 'rsi', 'Sabra02G0131000' => 'sbr', 'Sabra06G0066300' => 'sbr', 'Sabra08G0115500' => 'sbr', 'Sabra09G0023900' => 'sbr', 'Sabra10G0054000' => 'sbr', 'Sabra14G0081500' => 'sbr', 'Sabra16G0147100' => 'sbr', 'SalBow2G2957' => 'sbo', 'SalBow4G3320' => 'sbo', 'SalBow8G1894' => 'sbo', 'Sc07g0007950' => 'sci', 'Sc12g0001360' => 'sci', 'Sc13g0004330' => 'sci', 'Sc20g0005010' => 'sci', 'Sed0000361' => 'sed', 'Sed0001706' => 'sed', 'Sed0002422' => 'sed', 'Sed0004029' => 'sed', 'Sed0004602' => 'sed', 'Sed0004943' => 'sed', 'Sed0008646' => 'sed', 'Sed0023313' => 'sed', 'Sed0024843' => 'sed', 'SEGI_00081' => 'sgi', 'SEGI_00947' => 'sgi', 'SEGI_04046' => 'sgi', 'SEGI_06880' => 'sgi', 'SEGI_09736' => 'sgi', 'SEGI_12741' => 'sgi', 'SEGI_14530' => 'sgi', 'SEGI_20705' => 'sgi', 'SEGI_26088' => 'sgi', 'SEGI_28323' => 'sgi', 'SEGI_33343' => 'sgi', 'SGA_v2.0_scaffold126G33775' => 'sas', 'SGA_v2.0_scaffold2G01337' => 'sas', 'SGA_v2.0_scaffold38G15006' => 'sas', 'SGA_v2.0_scaffold39G15264' => 'sas', 'SGA_v2.0_scaffold453G51880' => 'sas', 'SHI12696' => 'shi', 'SMO367G1096' => 'smo', 'Solyc01g068630.3' => 'sly', 'Solyc05g011880.3' => 'sly', 'Solyc06g076300.3' => 'sly', 'Solyc09g010940.4' => 'sly', 'Solyc09g075890.3' => 'sly', 'Sopen01g030560' => 'spe', 'Sopen05g006630' => 'spe', 'Sopen06g032720' => 'spe', 'Sopen09g005660' => 'spe', 'Sopen09g030690' => 'spe', 'Sp4g14540' => 'spa', 'Sp4g20030' => 'spa', 'Sp5g01320' => 'spa', 'Sp6g21170' => 'spa', 'Sp6g21180' => 'spa', 'Sp6g21190' => 'spa', 'Sp6g40220' => 'spa', 'TAR362G0122' => 'tar', 'TAR362G1338' => 'tar', 'TAR369G0590' => 'tar', 'TAR371G0824' => 'tar', 'TAR622G1429' => 'tar', 'TAR623G0734' => 'tar', 'TAR625G0441' => 'tar', 'TAR629G0976' => 'tar', 'TAR633G1195' => 'tar', 'TAR636G2660' => 'tar', 'THA.LOC104799440' => 'tha', 'THA.LOC104800966' => 'tha', 'THA.LOC104806559' => 'tha', 'THA.LOC104810765' => 'tha', 'THA.LOC104816266' => 'tha', 'THA.LOC104817419' => 'tha', 'THA.LOC104827021' => 'tha', 'Thecc.01G327400' => 'tca', 'Thecc.04G229200' => 'tca', 'Thecc.05G037400' => 'tca', 'Thecc.09G318600' => 'tca', 'Thecc.09G318700' => 'tca', 'Thhalv10006238m.g' => 'esa', 'Thhalv10014321m.g' => 'esa', 'Thhalv10014335m.g' => 'esa', 'Thhalv10015826m.g' => 'esa', 'Thhalv10017107m.g' => 'esa', 'Thhalv10017180m.g' => 'esa', 'Thhalv10029339m.g' => 'esa', 'TPR.G1699' => 'tpr', 'TPR.G23609' => 'tpr', 'TPR.G3081' => 'tpr', 'TPR.G40397' => 'tpr', 'TPR.G5522' => 'tpr', 'TPR.G5618' => 'tpr', 'TPR.G5626' => 'tpr', 'TWI09G1632' => 'twi', 'TWI23G1230' => 'twi', 'TWI53G1064' => 'twi', 'TWI59G0751' => 'twi', 'TWI74G0947' => 'twi', 'TWI77G0337' => 'twi', 'TWI79G1254' => 'twi', 'unitig_0.g2341' => 'ugi', 'unitig_26.g10006' => 'ugi', 'unitig_26.g10008' => 'ugi', 'unitig_26.g9192' => 'ugi', 'vmacro14547' => 'vma', 'vmacro15333' => 'vma', 'vmacro18743' => 'vma', 'vmacro20166' => 'vma', 'VMungo0331G0523' => 'vmu', 'VMungo0331G1202' => 'vmu', 'VMungo0720G1228' => 'vmu', 'VMungo0720G1514' => 'vmu', 'VMungo1080G0169' => 'vmu', 'VMungo1127G1475' => 'vmu', 'VMungo1383G1208' => 'vmu', 'VMungo1383G1698' => 'vmu', 'Zm00001eb012270' => 'zma', 'Zm00001eb054100' => 'zma', 'Zm00001eb063350' => 'zma', 'Zm00001eb328560' => 'zma', 'Zm00001eb342820' => 'zma', 'Zm00001eb362210' => 'zma', 'Zm00001eb397730' => 'zma', 'Zm00001eb399750' => 'zma' ), 'gf_id' => 'HOM05D000959', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000959' ), 'data_identifier' => 'HOM05D000959', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000959', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '622', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p07100' => 'bna', 'A03p11720' => 'bna', 'A05p08300' => 'bna', 'A05p13380' => 'bna', 'A09p54130' => 'bna', 'A10p16690' => 'bna', 'A10p16700' => 'bna', 'A10p33390' => 'bna', 'Aa31LG10G16020' => 'aar', 'Aa31LG1G11810' => 'aar', 'Aa31LG1G11830' => 'aar', 'Aa31LG1G22510' => 'aar', 'Aa31LG5G4890' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5793' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2310' => 'aag', 'Actinidia08499' => 'ach', 'Actinidia11262' => 'ach', 'Actinidia23926' => 'ach', 'Actinidia34420' => 'ach', 'Actinidia36970' => 'ach', 'Ah.02g111220' => 'amhyb', 'Ah.15g097750' => 'amhyb', 'AL4G27500' => 'aly', 'AL6G11470' => 'aly', 'AL8G35950' => 'aly', 'AL8G35960' => 'aly', 'AL8G35970' => 'aly', 'Aqoxy1G00912' => 'aox', 'Aqoxy2G02253' => 'aox', 'Aqoxy2G02411' => 'aox', 'Aqoxy5G00485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BZ66YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K8ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM4FUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6BF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HFV7XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25JBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0YNNV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MAKK6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P70IT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP2Z6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V61LZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YWP64R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3S9AI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7PGHH' => 'arhy', 'AT2G32150' => 'ath', 'AT3G62040' => 'ath', 'AT5G02230' => 'ath', 'AT5G59480' => 'ath', 'AT5G59490' => 'ath', 'ATR0332G060' => 'atr', 'ATR0559G190' => 'atr', 'ATR0693G294' => 'atr', 'Atru.chr3.3975' => 'acertr', 'Atru.chr3.3976' => 'acertr', 'Atru.chr3.3977' => 'acertr', 'Atru.chr4.2498' => 'acertr', 'Atru.chr5.838' => 'acertr', 'Atru.chr8.1990' => 'acertr', 'Atru.chr8.1991' => 'acertr', 'Atru.chr8.1992' => 'acertr', 'AUR62001759' => 'cqu', 'AUR62009545' => 'cqu', 'AUR62010474' => 'cqu', 'AUR62025820' => 'cqu', 'AUR62030422' => 'cqu', 'AUR62033605' => 'cqu', 'AUR62038615' => 'cqu', 'AUR62041347' => 'cqu', 'BcaB01g04574' => 'bca', 'BcaB02g09263' => 'bca', 'BcaB02g10453' => 'bca', 'BcaB05g22513' => 'bca', 'BcaB08g36253' => 'bca', 'BcaB08g36254' => 'bca', 'BcaC01g06519' => 'bca', 'BcaC02g11889' => 'bca', 'BcaC03g14010' => 'bca', 'BcaC03g18439' => 'bca', 'BcaC04g19765' => 'bca', 'BcaC09g48432' => 'bca', 'BcaNung07302' => 'bca', 'BolC2t06040H' => 'bol', 'BolC2t07346H' => 'bol', 'BolC3t13817H' => 'bol', 'BolC4t22625H' => 'bol', 'BolC4t23297H' => 'bol', 'BolC8t51278H' => 'bol', 'BolC9t58050H' => 'bol', 'BolC9t58051H' => 'bol', 'BolC9t60163H' => 'bol', 'BraA02t04712Z' => 'bra', 'BraA02t05791Z' => 'bra', 'BraA03t10483Z' => 'bra', 'BraA05t19795Z' => 'bra', 'BraA05t20276Z' => 'bra', 'BraA09t40827Z' => 'bra', 'BraA10t43750Z' => 'bra', 'BraA10t43751Z' => 'bra', 'BraA10t45370Z' => 'bra', 'C02p00400' => 'bna', 'C02p12460' => 'bna', 'C03p13680' => 'bna', 'C04p10270' => 'bna', 'C04p17500' => 'bna', 'C08p37010' => 'bna', 'C09p51880' => 'bna', 'C09p51890' => 'bna', 'C09p74300' => 'bna', 'CAN.G179.26' => 'can', 'CAN.G3384.1' => 'can', 'CAN.G394.68' => 'can', 'CAN.G907.13' => 'can', 'CANSAT11G0012' => 'cansat', 'CANSAT25G1586' => 'cansat', 'CANSAT35G0735' => 'cansat', 'CANSAT54G0556' => 'cansat', 'CANSAT64G0356' => 'cansat', 'CANSAT78G2042' => 'cansat', 'CARHR125920' => 'chi', 'CARHR131910' => 'chi', 'CARHR172390' => 'chi', 'CARHR211140' => 'chi', 'CARHR285850' => 'chi', 'CARHR285860' => 'chi', 'Carub.0004s1347' => 'cru', 'Carub.0004s1960' => 'cru', 'Carub.0005s2880' => 'cru', 'Carub.0006s0107' => 'cru', 'Carub.0008s2015' => 'cru', 'Carub.0008s2016' => 'cru', 'Carub.0008s2017' => 'cru', 'Ca_01315_v3' => 'car', 'Ca_05063_v3' => 'car', 'Ca_10231_v3' => 'car', 'Ca_10913_v3' => 'car', 'Ca_19156_v3' => 'car', 'Ca_23644_v3' => 'car', 'Ca_26735_v3' => 'car', 'Cc01_g13130' => 'ccan', 'Cc02_g21690' => 'ccan', 'Cc03_g03600' => 'ccan', 'Cc06_g02510' => 'ccan', 'CDE02G1265' => 'cde', 'CDE05G0415' => 'cde', 'CDE08G1082' => 'cde', 'Cfa005780' => 'cfa', 'Cfa011522' => 'cfa', 'Cfa011523' => 'cfa', 'Cfa015627' => 'cfa', 'Cfa017359' => 'cfa', 'Ciclev10005687m.g' => 'ccl', 'Ciclev10012173m.g' => 'ccl', 'Ciclev10021621m.g' => 'ccl', 'Ciclev10028968m.g' => 'ccl', 'Ciclev10029907m.g' => 'ccl', 'CiPaw.01G164800' => 'cil', 'CiPaw.07G083700' => 'cil', 'CiPaw.07G127000' => 'cil', 'CiPaw.07G136900' => 'cil', 'CiPaw.08G081700' => 'cil', 'CiPaw.09G194600' => 'cil', 'CiPaw.10G146500' => 'cil', 'CiPaw.13G091500' => 'cil', 'CiPaw.13G091600' => 'cil', 'ClCG00G003390' => 'cla', 'ClCG01G007220' => 'cla', 'ClCG03G001370' => 'cla', 'ClCG04G008100' => 'cla', 'ClCG06G006110' => 'cla', 'ClCG06G006130' => 'cla', 'ClCG10G021210' => 'cla', 'COL.COLO4_07648' => 'col', 'COL.COLO4_07650' => 'col', 'COL.COLO4_07651' => 'col', 'COL.COLO4_14780' => 'col', 'COL.COLO4_18546' => 'col', 'COL.COLO4_18547' => 'col', 'COL.COLO4_23103' => 'col', 'COL.COLO4_30419' => 'col', 'COL.COLO4_34232' => 'col', 'Cpa.g.sc169.20' => 'cpa', 'Cpa.g.sc57.45' => 'cpa', 'Cpa.g.sc58.124' => 'cpa', 'Cpa.g.sc58.125' => 'cpa', 'Cpa.g.sc81.118' => 'cpa', 'Cpa.g.sc81.119' => 'cpa', 'Cre12.g524700' => 'cre', 'CsaV3_1G034430' => 'csa', 'CsaV3_1G034440' => 'csa', 'CsaV3_1G034450' => 'csa', 'CsaV3_3G034830' => 'csa', 'CsaV3_4G025090' => 'csa', 'CsaV3_5G018660' => 'csa', 'CsaV3_6G038160' => 'csa', 'CSS0003447' => 'camsi', 'CSS0017840' => 'camsi', 'CSS0019260' => 'camsi', 'CSS0040375' => 'camsi', 'CSS0042533' => 'camsi', 'DCAR_005960' => 'dca', 'DCAR_012104' => 'dca', 'DCAR_012105' => 'dca', 'DCAR_012293' => 'dca', 'DCAR_015632' => 'dca', 'DCAR_024602' => 'dca', 'DCAR_028752' => 'dca', 'Dinv06261' => 'din', 'Dinv13982' => 'din', 'Dinv17029' => 'din', 'Dinv18463' => 'din', 'Dinv33181' => 'din', 'Dinv35585' => 'din', 'Dinv37161' => 'din', 'Dinv42977' => 'din', 'Dinv43122' => 'din', 'Dinv44517' => 'din', 'Duzib093G0256' => 'dzi', 'Duzib106G1254' => 'dzi', 'Duzib128G1789' => 'dzi', 'Duzib133G0633' => 'dzi', 'Duzib138G0510' => 'dzi', 'Duzib150G1084' => 'dzi', 'Duzib168G0488' => 'dzi', 'Duzib168G1523' => 'dzi', 'Duzib170G0133' => 'dzi', 'ECA234G1433' => 'eca', 'ECA236G1432' => 'eca', 'ECA236G2256' => 'eca', 'ECA236G2365' => 'eca', 'ECA236G4830' => 'eca', 'ECA248G1505' => 'eca', 'EL10Ac3g06431' => 'bvu', 'EL10Ac5g12577' => 'bvu', 'EL10Ac6g13533' => 'bvu', 'EL10Ac7g16045' => 'bvu', 'Eucgr.A01281' => 'egr', 'Eucgr.B02326' => 'egr', 'Eucgr.H03532' => 'egr', 'Eucgr.K00553' => 'egr', 'Eucgr.K03116' => 'egr', 'FAN02G3963' => 'fan', 'FAN05G0438' => 'fan', 'FAN09G2434' => 'fan', 'FAN12G3984' => 'fan', 'FAN14G0798' => 'fan', 'FAN17G0652' => 'fan', 'FAN19G1988' => 'fan', 'FAN22G0632' => 'fan', 'FAN23G0387' => 'fan', 'FAN26G1323' => 'fan', 'FAN28G0666' => 'fan', 'FvH4_1g26080' => 'fve', 'FvH4_3g36780' => 'fve', 'FvH4_4g15270' => 'fve', 'FvH4_6g13490' => 'fve', 'Glyma.01G098700' => 'gma', 'Glyma.03G065900' => 'gma', 'Glyma.03G073754' => 'gma', 'Glyma.03G073758' => 'gma', 'Glyma.03G083200' => 'gma', 'Glyma.03G225500' => 'gma', 'Glyma.05G037766' => 'gma', 'Glyma.07G133500' => 'gma', 'Glyma.10G139400' => 'gma', 'Glyma.10G248900' => 'gma', 'Glyma.11G137800' => 'gma', 'Glyma.12G061300' => 'gma', 'Glyma.13G337900' => 'gma', 'Glyma.15G036600' => 'gma', 'Glyma.18G182800' => 'gma', 'Glyma.19G222500' => 'gma', 'Glyma.20G144800' => 'gma', 'Gohir.A01G222000' => 'ghi', 'Gohir.A03G044000' => 'ghi', 'Gohir.A03G044100' => 'ghi', 'Gohir.A04G083100' => 'ghi', 'Gohir.A07G127200' => 'ghi', 'Gohir.A07G132400' => 'ghi', 'Gohir.A08G000700' => 'ghi', 'Gohir.A11G327300' => 'ghi', 'Gohir.D01G211500' => 'ghi', 'Gohir.D03G123400' => 'ghi', 'Gohir.D03G123500' => 'ghi', 'Gohir.D04G121800' => 'ghi', 'Gohir.D07G131500' => 'ghi', 'Gohir.D07G136600' => 'ghi', 'Gohir.D08G011600' => 'ghi', 'Gohir.D11G346200' => 'ghi', 'Gorai.001G142800' => 'gra', 'Gorai.001G148700' => 'gra', 'Gorai.002G257300' => 'gra', 'Gorai.003G130000' => 'gra', 'Gorai.003G130100' => 'gra', 'Gorai.004G005300' => 'gra', 'Gorai.007G376500' => 'gra', 'Gorai.012G104700' => 'gra', 'GSVIVG01017946001' => 'vvi', 'GSVIVG01024928001' => 'vvi', 'GSVIVG01028227001' => 'vvi', 'GSVIVG01034151001' => 'vvi', 'HanXRQChr05g0135031' => 'han', 'HanXRQChr05g0135041' => 'han', 'HanXRQChr05g0140021' => 'han', 'HanXRQChr06g0178981' => 'han', 'HanXRQChr07g0188251' => 'han', 'HanXRQChr08g0235311' => 'han', 'HanXRQChr09g0271011' => 'han', 'HanXRQChr10g0293321' => 'han', 'HanXRQChr13g0388171' => 'han', 'Haze_00916' => 'cav', 'Haze_05063' => 'cav', 'Haze_20814' => 'cav', 'Haze_24128' => 'cav', 'Hma1.2p1_0745F.1_g212010' => 'hma', 'Hma1.2p1_0757F.1_g213260' => 'hma', 'Hma1.2p1_0936F.1_g238840' => 'hma', 'Hma1.2p1_1735F.1_g299890' => 'hma', 'Hma1.2p1_1861F.1_g305685' => 'hma', 'HPP92_003397' => 'vpl', 'HPP92_012597' => 'vpl', 'HPP92_015520' => 'vpl', 'HPP92_015539' => 'vpl', 'HPP92_020373' => 'vpl', 'Hund04938' => 'sun', 'Hund10677' => 'sun', 'Hund11033' => 'sun', 'Hund12155' => 'sun', 'Lalb_Chr01g0022551' => 'lal', 'Lalb_Chr03g0042341' => 'lal', 'Lalb_Chr07g0192931' => 'lal', 'Lalb_Chr12g0209551' => 'lal', 'Lalb_Chr19g0125251' => 'lal', 'Lalb_Chr19g0137891' => 'lal', 'Lalb_Chr21g0304641' => 'lal', 'Lalb_Chr21g0309881' => 'lal', 'Lj1A5T12' => 'lonja', 'Lj1C148G10' => 'lonja', 'Lj2A93T83' => 'lonja', 'Lj3A738G68' => 'lonja', 'Lj3C966T1' => 'lonja', 'Lj3g0018958' => 'lja', 'Lj3g0021831' => 'lja', 'Lj3g0025443' => 'lja', 'Lj4g0026809' => 'lja', 'Lj5g0012558' => 'lja', 'Lj5g0021586' => 'lja', 'Lsat_1_v5_gn_5_156840' => 'lsa', 'Lsat_1_v5_gn_8_73460' => 'lsa', 'Lsat_1_v5_gn_8_73481' => 'lsa', 'Lsat_1_v5_gn_9_31601' => 'lsa', 'Lsat_1_v5_gn_9_77320' => 'lsa', 'Manes.01G171300' => 'mes', 'Manes.01G171400' => 'mes', 'Manes.01G236100' => 'mes', 'Manes.02G130500' => 'mes', 'Manes.02G130600' => 'mes', 'Manes.03G180200' => 'mes', 'Manes.05G007000' => 'mes', 'Manes.08G084400' => 'mes', 'Manes.09G092600' => 'mes', 'Manes.15G027900' => 'mes', 'MBI04_g40948_MAGBIO' => 'mbi', 'MBI14_g12123_MAGBIO' => 'mbi', 'MBI18_g28915_MAGBIO' => 'mbi', 'MCO09G053' => 'mco', 'MCO11G782' => 'mco', 'MCO15G215' => 'mco', 'MD03G1088500' => 'mdo', 'MD03G1088600' => 'mdo', 'MD04G1130800' => 'mdo', 'MD09G1291700' => 'mdo', 'MD11G1097500' => 'mdo', 'MD11G1097600' => 'mdo', 'MD12G1143900' => 'mdo', 'MD13G1191400' => 'mdo', 'MD16G1191500' => 'mdo', 'Medtr1g085570' => 'mtr', 'Medtr1g104610' => 'mtr', 'Medtr2g097520' => 'mtr', 'Medtr4g021800' => 'mtr', 'Medtr4g021825' => 'mtr', 'Medtr4g064270' => 'mtr', 'Medtr4g064380' => 'mtr', 'Medtr7g062150' => 'mtr', 'MELO3C003138.2' => 'cme', 'MELO3C005187.2' => 'cme', 'MELO3C009252.2' => 'cme', 'MELO3C014481.2' => 'cme', 'MELO3C020616.2' => 'cme', 'MELO3C020617.2' => 'cme', 'MELO3C020618.2' => 'cme', 'Migut.G00328' => 'egut', 'Migut.J00320' => 'egut', 'Migut.L01000' => 'egut', 'Migut.L01953' => 'egut', 'MSTRG.10253' => 'ama', 'MSTRG.19077' => 'ama', 'MSTRG.26780' => 'ama', 'MSTRG.4023' => 'ama', 'MSTRG.5655' => 'ama', 'MSTRG.9992' => 'ama', 'Nitab4.5_0000043g0310' => 'nta', 'Nitab4.5_0000463g0080' => 'nta', 'Nitab4.5_0000705g0170' => 'nta', 'Nitab4.5_0001326g0060' => 'nta', 'Nitab4.5_0001628g0030' => 'nta', 'Nitab4.5_0002103g0110' => 'nta', 'Nitab4.5_0002946g0030' => 'nta', 'Nitab4.5_0004639g0030' => 'nta', 'Nn2g11149' => 'nnu', 'Nn2g13389' => 'nnu', 'Nn4g25326' => 'nnu', 'Nn4g26290' => 'nnu', 'Nn5g29865' => 'nnu', 'Oeu004163.1' => 'oeu', 'Oeu006901.1' => 'oeu', 'Oeu010096.1' => 'oeu', 'Oeu024340.1' => 'oeu', 'Oeu048369.1' => 'oeu', 'Os01g0973000' => 'osa', 'Os03g0273800' => 'osa', 'Os03g0701200' => 'osa', 'Os03g0834050' => 'osa', 'Os07g0634400' => 'osa', 'Peaxi162Scf00092g01414' => 'pax', 'Peaxi162Scf00165g00818' => 'pax', 'Peaxi162Scf00309g00516' => 'pax', 'Peaxi162Scf00774g00218' => 'pax', 'PGR004G1824' => 'pgr', 'PGR004G2606' => 'pgr', 'PGR031G2716' => 'pgr', 'PGR102G2460' => 'pgr', 'PGR142G2599' => 'pgr', 'PGSC0003DMG400000843' => 'stu', 'PGSC0003DMG400008829' => 'stu', 'PGSC0003DMG400030418' => 'stu', 'PGSC0003DMG400031834' => 'stu', 'PGSC0003DMG401028300' => 'stu', 'PGSC0003DMG402028300' => 'stu', 'Phvul.001G219300' => 'pvu', 'Phvul.007G056000' => 'pvu', 'Phvul.007G208000' => 'pvu', 'Phvul.008G119500' => 'pvu', 'Phvul.010G011200' => 'pvu', 'Phvul.010G014800' => 'pvu', 'Phvul.011G062900' => 'pvu', 'Phvul.L007043' => 'pvu', 'Potri.001G242300' => 'ptr', 'Potri.002G185300' => 'ptr', 'Potri.006G086900' => 'ptr', 'Potri.008G151700' => 'ptr', 'Potri.009G033500' => 'ptr', 'Potri.010G089300' => 'ptr', 'Potri.014G110800' => 'ptr', 'Pp3c27_8130' => 'ppa', 'Pp3c6_27410' => 'ppa', 'PRCOL_00001659' => 'pco', 'PRCOL_00001927' => 'pco', 'PRCOL_00003649' => 'pco', 'Prupe.1G011600' => 'ppe', 'Prupe.3G000800' => 'ppe', 'Prupe.3G001100' => 'ppe', 'Prupe.6G072700' => 'ppe', 'Prupe.6G072800' => 'ppe', 'Prupe.6G257300' => 'ppe', 'Prupe.8G033000' => 'ppe', 'Psat0s2633g0080' => 'psa', 'Psat0s3396g0080' => 'psa', 'Psat0s3396g0200' => 'psa', 'Psat3g139080' => 'psa', 'Psat5g285080' => 'psa', 'Psat6g157760' => 'psa', 'Psat6g208440' => 'psa', 'Psat7g215320' => 'psa', 'Psat7g215400' => 'psa', 'Psat7g235600' => 'psa', 'Psat7g235760' => 'psa', 'PSO063G4603' => 'pso', 'PSO210G0182' => 'pso', 'PSO210G0196' => 'pso', 'PSO339G0394' => 'pso', 'PSO339G4127' => 'pso', 'PSO513G0064' => 'pso', 'PSO761G0079' => 'pso', 'QL01p031003' => 'qlo', 'QL01p031078' => 'qlo', 'QL06p003004' => 'qlo', 'QL07p048731' => 'qlo', 'QL09p037427' => 'qlo', 'RcHm_v2.0_Chr3g0466361' => 'rch', 'RcHm_v2.0_Chr3g0485571' => 'rch', 'RcHm_v2.0_Chr4g0416551' => 'rch', 'RcHm_v2.0_Chr5g0065831' => 'rch', 'Rhsim01G0230500' => 'rsi', 'Rhsim05G0194000' => 'rsi', 'Rhsim08G0250400' => 'rsi', 'Sabra02G0131000' => 'sbr', 'Sabra06G0066300' => 'sbr', 'Sabra08G0115500' => 'sbr', 'Sabra09G0023900' => 'sbr', 'Sabra10G0054000' => 'sbr', 'Sabra14G0081500' => 'sbr', 'Sabra16G0147100' => 'sbr', 'SalBow2G2957' => 'sbo', 'SalBow4G3320' => 'sbo', 'SalBow8G1894' => 'sbo', 'Sc07g0007950' => 'sci', 'Sc12g0001360' => 'sci', 'Sc13g0004330' => 'sci', 'Sc20g0005010' => 'sci', 'Sed0000361' => 'sed', 'Sed0001706' => 'sed', 'Sed0002422' => 'sed', 'Sed0004029' => 'sed', 'Sed0004602' => 'sed', 'Sed0004943' => 'sed', 'Sed0008646' => 'sed', 'Sed0023313' => 'sed', 'Sed0024843' => 'sed', 'SEGI_00081' => 'sgi', 'SEGI_00947' => 'sgi', 'SEGI_04046' => 'sgi', 'SEGI_06880' => 'sgi', 'SEGI_09736' => 'sgi', 'SEGI_12741' => 'sgi', 'SEGI_14530' => 'sgi', 'SEGI_20705' => 'sgi', 'SEGI_26088' => 'sgi', 'SEGI_28323' => 'sgi', 'SEGI_33343' => 'sgi', 'SGA_v2.0_scaffold126G33775' => 'sas', 'SGA_v2.0_scaffold2G01337' => 'sas', 'SGA_v2.0_scaffold38G15006' => 'sas', 'SGA_v2.0_scaffold39G15264' => 'sas', 'SGA_v2.0_scaffold453G51880' => 'sas', 'SHI12696' => 'shi', 'SMO367G1096' => 'smo', 'Solyc01g068630.3' => 'sly', 'Solyc05g011880.3' => 'sly', 'Solyc06g076300.3' => 'sly', 'Solyc09g010940.4' => 'sly', 'Solyc09g075890.3' => 'sly', 'Sopen01g030560' => 'spe', 'Sopen05g006630' => 'spe', 'Sopen06g032720' => 'spe', 'Sopen09g005660' => 'spe', 'Sopen09g030690' => 'spe', 'Sp4g14540' => 'spa', 'Sp4g20030' => 'spa', 'Sp5g01320' => 'spa', 'Sp6g21170' => 'spa', 'Sp6g21180' => 'spa', 'Sp6g21190' => 'spa', 'Sp6g40220' => 'spa', 'TAR362G0122' => 'tar', 'TAR362G1338' => 'tar', 'TAR369G0590' => 'tar', 'TAR371G0824' => 'tar', 'TAR622G1429' => 'tar', 'TAR623G0734' => 'tar', 'TAR625G0441' => 'tar', 'TAR629G0976' => 'tar', 'TAR633G1195' => 'tar', 'TAR636G2660' => 'tar', 'THA.LOC104799440' => 'tha', 'THA.LOC104800966' => 'tha', 'THA.LOC104806559' => 'tha', 'THA.LOC104810765' => 'tha', 'THA.LOC104816266' => 'tha', 'THA.LOC104817419' => 'tha', 'THA.LOC104827021' => 'tha', 'Thecc.01G327400' => 'tca', 'Thecc.04G229200' => 'tca', 'Thecc.05G037400' => 'tca', 'Thecc.09G318600' => 'tca', 'Thecc.09G318700' => 'tca', 'Thhalv10006238m.g' => 'esa', 'Thhalv10014321m.g' => 'esa', 'Thhalv10014335m.g' => 'esa', 'Thhalv10015826m.g' => 'esa', 'Thhalv10017107m.g' => 'esa', 'Thhalv10017180m.g' => 'esa', 'Thhalv10029339m.g' => 'esa', 'TPR.G1699' => 'tpr', 'TPR.G23609' => 'tpr', 'TPR.G3081' => 'tpr', 'TPR.G40397' => 'tpr', 'TPR.G5522' => 'tpr', 'TPR.G5618' => 'tpr', 'TPR.G5626' => 'tpr', 'TWI09G1632' => 'twi', 'TWI23G1230' => 'twi', 'TWI53G1064' => 'twi', 'TWI59G0751' => 'twi', 'TWI74G0947' => 'twi', 'TWI77G0337' => 'twi', 'TWI79G1254' => 'twi', 'unitig_0.g2341' => 'ugi', 'unitig_26.g10006' => 'ugi', 'unitig_26.g10008' => 'ugi', 'unitig_26.g9192' => 'ugi', 'vmacro14547' => 'vma', 'vmacro15333' => 'vma', 'vmacro18743' => 'vma', 'vmacro20166' => 'vma', 'VMungo0331G0523' => 'vmu', 'VMungo0331G1202' => 'vmu', 'VMungo0720G1228' => 'vmu', 'VMungo0720G1514' => 'vmu', 'VMungo1080G0169' => 'vmu', 'VMungo1127G1475' => 'vmu', 'VMungo1383G1208' => 'vmu', 'VMungo1383G1698' => 'vmu', 'Zm00001eb012270' => 'zma', 'Zm00001eb054100' => 'zma', 'Zm00001eb063350' => 'zma', 'Zm00001eb328560' => 'zma', 'Zm00001eb342820' => 'zma', 'Zm00001eb362210' => 'zma', 'Zm00001eb397730' => 'zma', 'Zm00001eb399750' => 'zma' ) $gf_id = 'HOM05D000959' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000959' ) $data_identifier = 'HOM05D000959' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 5, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 5, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 10, 'mbi' => (int) 3, 'mco' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 2, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 3, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 11, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399750' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000959', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '622', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p07100' => 'bna', 'A03p11720' => 'bna', 'A05p08300' => 'bna', 'A05p13380' => 'bna', 'A09p54130' => 'bna', 'A10p16690' => 'bna', 'A10p16700' => 'bna', 'A10p33390' => 'bna', 'Aa31LG10G16020' => 'aar', 'Aa31LG1G11810' => 'aar', 'Aa31LG1G11830' => 'aar', 'Aa31LG1G22510' => 'aar', 'Aa31LG5G4890' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5793' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2310' => 'aag', 'Actinidia08499' => 'ach', 'Actinidia11262' => 'ach', 'Actinidia23926' => 'ach', 'Actinidia34420' => 'ach', 'Actinidia36970' => 'ach', 'Ah.02g111220' => 'amhyb', 'Ah.15g097750' => 'amhyb', 'AL4G27500' => 'aly', 'AL6G11470' => 'aly', 'AL8G35950' => 'aly', 'AL8G35960' => 'aly', 'AL8G35970' => 'aly', 'Aqoxy1G00912' => 'aox', 'Aqoxy2G02253' => 'aox', 'Aqoxy2G02411' => 'aox', 'Aqoxy5G00485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BZ66YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K8ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM4FUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6BF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HFV7XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25JBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0YNNV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MAKK6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P70IT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP2Z6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V61LZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YWP64R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3S9AI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7PGHH' => 'arhy', 'AT2G32150' => 'ath', 'AT3G62040' => 'ath', 'AT5G02230' => 'ath', 'AT5G59480' => 'ath', 'AT5G59490' => 'ath', 'ATR0332G060' => 'atr', 'ATR0559G190' => 'atr', 'ATR0693G294' => 'atr', 'Atru.chr3.3975' => 'acertr', 'Atru.chr3.3976' => 'acertr', 'Atru.chr3.3977' => 'acertr', 'Atru.chr4.2498' => 'acertr', 'Atru.chr5.838' => 'acertr', 'Atru.chr8.1990' => 'acertr', 'Atru.chr8.1991' => 'acertr', 'Atru.chr8.1992' => 'acertr', 'AUR62001759' => 'cqu', 'AUR62009545' => 'cqu', 'AUR62010474' => 'cqu', 'AUR62025820' => 'cqu', 'AUR62030422' => 'cqu', 'AUR62033605' => 'cqu', 'AUR62038615' => 'cqu', 'AUR62041347' => 'cqu', 'BcaB01g04574' => 'bca', 'BcaB02g09263' => 'bca', 'BcaB02g10453' => 'bca', 'BcaB05g22513' => 'bca', 'BcaB08g36253' => 'bca', 'BcaB08g36254' => 'bca', 'BcaC01g06519' => 'bca', 'BcaC02g11889' => 'bca', 'BcaC03g14010' => 'bca', 'BcaC03g18439' => 'bca', 'BcaC04g19765' => 'bca', 'BcaC09g48432' => 'bca', 'BcaNung07302' => 'bca', 'BolC2t06040H' => 'bol', 'BolC2t07346H' => 'bol', 'BolC3t13817H' => 'bol', 'BolC4t22625H' => 'bol', 'BolC4t23297H' => 'bol', 'BolC8t51278H' => 'bol', 'BolC9t58050H' => 'bol', 'BolC9t58051H' => 'bol', 'BolC9t60163H' => 'bol', 'BraA02t04712Z' => 'bra', 'BraA02t05791Z' => 'bra', 'BraA03t10483Z' => 'bra', 'BraA05t19795Z' => 'bra', 'BraA05t20276Z' => 'bra', 'BraA09t40827Z' => 'bra', 'BraA10t43750Z' => 'bra', 'BraA10t43751Z' => 'bra', 'BraA10t45370Z' => 'bra', 'C02p00400' => 'bna', 'C02p12460' => 'bna', 'C03p13680' => 'bna', 'C04p10270' => 'bna', 'C04p17500' => 'bna', 'C08p37010' => 'bna', 'C09p51880' => 'bna', 'C09p51890' => 'bna', 'C09p74300' => 'bna', 'CAN.G179.26' => 'can', 'CAN.G3384.1' => 'can', 'CAN.G394.68' => 'can', 'CAN.G907.13' => 'can', 'CANSAT11G0012' => 'cansat', 'CANSAT25G1586' => 'cansat', 'CANSAT35G0735' => 'cansat', 'CANSAT54G0556' => 'cansat', 'CANSAT64G0356' => 'cansat', 'CANSAT78G2042' => 'cansat', 'CARHR125920' => 'chi', 'CARHR131910' => 'chi', 'CARHR172390' => 'chi', 'CARHR211140' => 'chi', 'CARHR285850' => 'chi', 'CARHR285860' => 'chi', 'Carub.0004s1347' => 'cru', 'Carub.0004s1960' => 'cru', 'Carub.0005s2880' => 'cru', 'Carub.0006s0107' => 'cru', 'Carub.0008s2015' => 'cru', 'Carub.0008s2016' => 'cru', 'Carub.0008s2017' => 'cru', 'Ca_01315_v3' => 'car', 'Ca_05063_v3' => 'car', 'Ca_10231_v3' => 'car', 'Ca_10913_v3' => 'car', 'Ca_19156_v3' => 'car', 'Ca_23644_v3' => 'car', 'Ca_26735_v3' => 'car', 'Cc01_g13130' => 'ccan', 'Cc02_g21690' => 'ccan', 'Cc03_g03600' => 'ccan', 'Cc06_g02510' => 'ccan', 'CDE02G1265' => 'cde', 'CDE05G0415' => 'cde', 'CDE08G1082' => 'cde', 'Cfa005780' => 'cfa', 'Cfa011522' => 'cfa', 'Cfa011523' => 'cfa', 'Cfa015627' => 'cfa', 'Cfa017359' => 'cfa', 'Ciclev10005687m.g' => 'ccl', 'Ciclev10012173m.g' => 'ccl', 'Ciclev10021621m.g' => 'ccl', 'Ciclev10028968m.g' => 'ccl', 'Ciclev10029907m.g' => 'ccl', 'CiPaw.01G164800' => 'cil', 'CiPaw.07G083700' => 'cil', 'CiPaw.07G127000' => 'cil', 'CiPaw.07G136900' => 'cil', 'CiPaw.08G081700' => 'cil', 'CiPaw.09G194600' => 'cil', 'CiPaw.10G146500' => 'cil', 'CiPaw.13G091500' => 'cil', 'CiPaw.13G091600' => 'cil', 'ClCG00G003390' => 'cla', 'ClCG01G007220' => 'cla', 'ClCG03G001370' => 'cla', 'ClCG04G008100' => 'cla', 'ClCG06G006110' => 'cla', 'ClCG06G006130' => 'cla', 'ClCG10G021210' => 'cla', 'COL.COLO4_07648' => 'col', 'COL.COLO4_07650' => 'col', 'COL.COLO4_07651' => 'col', 'COL.COLO4_14780' => 'col', 'COL.COLO4_18546' => 'col', 'COL.COLO4_18547' => 'col', 'COL.COLO4_23103' => 'col', 'COL.COLO4_30419' => 'col', 'COL.COLO4_34232' => 'col', 'Cpa.g.sc169.20' => 'cpa', 'Cpa.g.sc57.45' => 'cpa', 'Cpa.g.sc58.124' => 'cpa', 'Cpa.g.sc58.125' => 'cpa', 'Cpa.g.sc81.118' => 'cpa', 'Cpa.g.sc81.119' => 'cpa', 'Cre12.g524700' => 'cre', 'CsaV3_1G034430' => 'csa', 'CsaV3_1G034440' => 'csa', 'CsaV3_1G034450' => 'csa', 'CsaV3_3G034830' => 'csa', 'CsaV3_4G025090' => 'csa', 'CsaV3_5G018660' => 'csa', 'CsaV3_6G038160' => 'csa', 'CSS0003447' => 'camsi', 'CSS0017840' => 'camsi', 'CSS0019260' => 'camsi', 'CSS0040375' => 'camsi', 'CSS0042533' => 'camsi', 'DCAR_005960' => 'dca', 'DCAR_012104' => 'dca', 'DCAR_012105' => 'dca', 'DCAR_012293' => 'dca', 'DCAR_015632' => 'dca', 'DCAR_024602' => 'dca', 'DCAR_028752' => 'dca', 'Dinv06261' => 'din', 'Dinv13982' => 'din', 'Dinv17029' => 'din', 'Dinv18463' => 'din', 'Dinv33181' => 'din', 'Dinv35585' => 'din', 'Dinv37161' => 'din', 'Dinv42977' => 'din', 'Dinv43122' => 'din', 'Dinv44517' => 'din', 'Duzib093G0256' => 'dzi', 'Duzib106G1254' => 'dzi', 'Duzib128G1789' => 'dzi', 'Duzib133G0633' => 'dzi', 'Duzib138G0510' => 'dzi', 'Duzib150G1084' => 'dzi', 'Duzib168G0488' => 'dzi', 'Duzib168G1523' => 'dzi', 'Duzib170G0133' => 'dzi', 'ECA234G1433' => 'eca', 'ECA236G1432' => 'eca', 'ECA236G2256' => 'eca', 'ECA236G2365' => 'eca', 'ECA236G4830' => 'eca', 'ECA248G1505' => 'eca', 'EL10Ac3g06431' => 'bvu', 'EL10Ac5g12577' => 'bvu', 'EL10Ac6g13533' => 'bvu', 'EL10Ac7g16045' => 'bvu', 'Eucgr.A01281' => 'egr', 'Eucgr.B02326' => 'egr', 'Eucgr.H03532' => 'egr', 'Eucgr.K00553' => 'egr', 'Eucgr.K03116' => 'egr', 'FAN02G3963' => 'fan', 'FAN05G0438' => 'fan', 'FAN09G2434' => 'fan', 'FAN12G3984' => 'fan', 'FAN14G0798' => 'fan', 'FAN17G0652' => 'fan', 'FAN19G1988' => 'fan', 'FAN22G0632' => 'fan', 'FAN23G0387' => 'fan', 'FAN26G1323' => 'fan', 'FAN28G0666' => 'fan', 'FvH4_1g26080' => 'fve', 'FvH4_3g36780' => 'fve', 'FvH4_4g15270' => 'fve', 'FvH4_6g13490' => 'fve', 'Glyma.01G098700' => 'gma', 'Glyma.03G065900' => 'gma', 'Glyma.03G073754' => 'gma', 'Glyma.03G073758' => 'gma', 'Glyma.03G083200' => 'gma', 'Glyma.03G225500' => 'gma', 'Glyma.05G037766' => 'gma', 'Glyma.07G133500' => 'gma', 'Glyma.10G139400' => 'gma', 'Glyma.10G248900' => 'gma', 'Glyma.11G137800' => 'gma', 'Glyma.12G061300' => 'gma', 'Glyma.13G337900' => 'gma', 'Glyma.15G036600' => 'gma', 'Glyma.18G182800' => 'gma', 'Glyma.19G222500' => 'gma', 'Glyma.20G144800' => 'gma', 'Gohir.A01G222000' => 'ghi', 'Gohir.A03G044000' => 'ghi', 'Gohir.A03G044100' => 'ghi', 'Gohir.A04G083100' => 'ghi', 'Gohir.A07G127200' => 'ghi', 'Gohir.A07G132400' => 'ghi', 'Gohir.A08G000700' => 'ghi', 'Gohir.A11G327300' => 'ghi', 'Gohir.D01G211500' => 'ghi', 'Gohir.D03G123400' => 'ghi', 'Gohir.D03G123500' => 'ghi', 'Gohir.D04G121800' => 'ghi', 'Gohir.D07G131500' => 'ghi', 'Gohir.D07G136600' => 'ghi', 'Gohir.D08G011600' => 'ghi', 'Gohir.D11G346200' => 'ghi', 'Gorai.001G142800' => 'gra', 'Gorai.001G148700' => 'gra', 'Gorai.002G257300' => 'gra', 'Gorai.003G130000' => 'gra', 'Gorai.003G130100' => 'gra', 'Gorai.004G005300' => 'gra', 'Gorai.007G376500' => 'gra', 'Gorai.012G104700' => 'gra', 'GSVIVG01017946001' => 'vvi', 'GSVIVG01024928001' => 'vvi', 'GSVIVG01028227001' => 'vvi', 'GSVIVG01034151001' => 'vvi', 'HanXRQChr05g0135031' => 'han', 'HanXRQChr05g0135041' => 'han', 'HanXRQChr05g0140021' => 'han', 'HanXRQChr06g0178981' => 'han', 'HanXRQChr07g0188251' => 'han', 'HanXRQChr08g0235311' => 'han', 'HanXRQChr09g0271011' => 'han', 'HanXRQChr10g0293321' => 'han', 'HanXRQChr13g0388171' => 'han', 'Haze_00916' => 'cav', 'Haze_05063' => 'cav', 'Haze_20814' => 'cav', 'Haze_24128' => 'cav', 'Hma1.2p1_0745F.1_g212010' => 'hma', 'Hma1.2p1_0757F.1_g213260' => 'hma', 'Hma1.2p1_0936F.1_g238840' => 'hma', 'Hma1.2p1_1735F.1_g299890' => 'hma', 'Hma1.2p1_1861F.1_g305685' => 'hma', 'HPP92_003397' => 'vpl', 'HPP92_012597' => 'vpl', 'HPP92_015520' => 'vpl', 'HPP92_015539' => 'vpl', 'HPP92_020373' => 'vpl', 'Hund04938' => 'sun', 'Hund10677' => 'sun', 'Hund11033' => 'sun', 'Hund12155' => 'sun', 'Lalb_Chr01g0022551' => 'lal', 'Lalb_Chr03g0042341' => 'lal', 'Lalb_Chr07g0192931' => 'lal', 'Lalb_Chr12g0209551' => 'lal', 'Lalb_Chr19g0125251' => 'lal', 'Lalb_Chr19g0137891' => 'lal', 'Lalb_Chr21g0304641' => 'lal', 'Lalb_Chr21g0309881' => 'lal', 'Lj1A5T12' => 'lonja', 'Lj1C148G10' => 'lonja', 'Lj2A93T83' => 'lonja', 'Lj3A738G68' => 'lonja', 'Lj3C966T1' => 'lonja', 'Lj3g0018958' => 'lja', 'Lj3g0021831' => 'lja', 'Lj3g0025443' => 'lja', 'Lj4g0026809' => 'lja', 'Lj5g0012558' => 'lja', 'Lj5g0021586' => 'lja', 'Lsat_1_v5_gn_5_156840' => 'lsa', 'Lsat_1_v5_gn_8_73460' => 'lsa', 'Lsat_1_v5_gn_8_73481' => 'lsa', 'Lsat_1_v5_gn_9_31601' => 'lsa', 'Lsat_1_v5_gn_9_77320' => 'lsa', 'Manes.01G171300' => 'mes', 'Manes.01G171400' => 'mes', 'Manes.01G236100' => 'mes', 'Manes.02G130500' => 'mes', 'Manes.02G130600' => 'mes', 'Manes.03G180200' => 'mes', 'Manes.05G007000' => 'mes', 'Manes.08G084400' => 'mes', 'Manes.09G092600' => 'mes', 'Manes.15G027900' => 'mes', 'MBI04_g40948_MAGBIO' => 'mbi', 'MBI14_g12123_MAGBIO' => 'mbi', 'MBI18_g28915_MAGBIO' => 'mbi', 'MCO09G053' => 'mco', 'MCO11G782' => 'mco', 'MCO15G215' => 'mco', 'MD03G1088500' => 'mdo', 'MD03G1088600' => 'mdo', 'MD04G1130800' => 'mdo', 'MD09G1291700' => 'mdo', 'MD11G1097500' => 'mdo', 'MD11G1097600' => 'mdo', 'MD12G1143900' => 'mdo', 'MD13G1191400' => 'mdo', 'MD16G1191500' => 'mdo', 'Medtr1g085570' => 'mtr', 'Medtr1g104610' => 'mtr', 'Medtr2g097520' => 'mtr', 'Medtr4g021800' => 'mtr', 'Medtr4g021825' => 'mtr', 'Medtr4g064270' => 'mtr', 'Medtr4g064380' => 'mtr', 'Medtr7g062150' => 'mtr', 'MELO3C003138.2' => 'cme', 'MELO3C005187.2' => 'cme', 'MELO3C009252.2' => 'cme', 'MELO3C014481.2' => 'cme', 'MELO3C020616.2' => 'cme', 'MELO3C020617.2' => 'cme', 'MELO3C020618.2' => 'cme', 'Migut.G00328' => 'egut', 'Migut.J00320' => 'egut', 'Migut.L01000' => 'egut', 'Migut.L01953' => 'egut', 'MSTRG.10253' => 'ama', 'MSTRG.19077' => 'ama', 'MSTRG.26780' => 'ama', 'MSTRG.4023' => 'ama', 'MSTRG.5655' => 'ama', 'MSTRG.9992' => 'ama', 'Nitab4.5_0000043g0310' => 'nta', 'Nitab4.5_0000463g0080' => 'nta', 'Nitab4.5_0000705g0170' => 'nta', 'Nitab4.5_0001326g0060' => 'nta', 'Nitab4.5_0001628g0030' => 'nta', 'Nitab4.5_0002103g0110' => 'nta', 'Nitab4.5_0002946g0030' => 'nta', 'Nitab4.5_0004639g0030' => 'nta', 'Nn2g11149' => 'nnu', 'Nn2g13389' => 'nnu', 'Nn4g25326' => 'nnu', 'Nn4g26290' => 'nnu', 'Nn5g29865' => 'nnu', 'Oeu004163.1' => 'oeu', 'Oeu006901.1' => 'oeu', 'Oeu010096.1' => 'oeu', 'Oeu024340.1' => 'oeu', 'Oeu048369.1' => 'oeu', 'Os01g0973000' => 'osa', 'Os03g0273800' => 'osa', 'Os03g0701200' => 'osa', 'Os03g0834050' => 'osa', 'Os07g0634400' => 'osa', 'Peaxi162Scf00092g01414' => 'pax', 'Peaxi162Scf00165g00818' => 'pax', 'Peaxi162Scf00309g00516' => 'pax', 'Peaxi162Scf00774g00218' => 'pax', 'PGR004G1824' => 'pgr', 'PGR004G2606' => 'pgr', 'PGR031G2716' => 'pgr', 'PGR102G2460' => 'pgr', 'PGR142G2599' => 'pgr', 'PGSC0003DMG400000843' => 'stu', 'PGSC0003DMG400008829' => 'stu', 'PGSC0003DMG400030418' => 'stu', 'PGSC0003DMG400031834' => 'stu', 'PGSC0003DMG401028300' => 'stu', 'PGSC0003DMG402028300' => 'stu', 'Phvul.001G219300' => 'pvu', 'Phvul.007G056000' => 'pvu', 'Phvul.007G208000' => 'pvu', 'Phvul.008G119500' => 'pvu', 'Phvul.010G011200' => 'pvu', 'Phvul.010G014800' => 'pvu', 'Phvul.011G062900' => 'pvu', 'Phvul.L007043' => 'pvu', 'Potri.001G242300' => 'ptr', 'Potri.002G185300' => 'ptr', 'Potri.006G086900' => 'ptr', 'Potri.008G151700' => 'ptr', 'Potri.009G033500' => 'ptr', 'Potri.010G089300' => 'ptr', 'Potri.014G110800' => 'ptr', 'Pp3c27_8130' => 'ppa', 'Pp3c6_27410' => 'ppa', 'PRCOL_00001659' => 'pco', 'PRCOL_00001927' => 'pco', 'PRCOL_00003649' => 'pco', 'Prupe.1G011600' => 'ppe', 'Prupe.3G000800' => 'ppe', 'Prupe.3G001100' => 'ppe', 'Prupe.6G072700' => 'ppe', 'Prupe.6G072800' => 'ppe', 'Prupe.6G257300' => 'ppe', 'Prupe.8G033000' => 'ppe', 'Psat0s2633g0080' => 'psa', 'Psat0s3396g0080' => 'psa', 'Psat0s3396g0200' => 'psa', 'Psat3g139080' => 'psa', 'Psat5g285080' => 'psa', 'Psat6g157760' => 'psa', 'Psat6g208440' => 'psa', 'Psat7g215320' => 'psa', 'Psat7g215400' => 'psa', 'Psat7g235600' => 'psa', 'Psat7g235760' => 'psa', 'PSO063G4603' => 'pso', 'PSO210G0182' => 'pso', 'PSO210G0196' => 'pso', 'PSO339G0394' => 'pso', 'PSO339G4127' => 'pso', 'PSO513G0064' => 'pso', 'PSO761G0079' => 'pso', 'QL01p031003' => 'qlo', 'QL01p031078' => 'qlo', 'QL06p003004' => 'qlo', 'QL07p048731' => 'qlo', 'QL09p037427' => 'qlo', 'RcHm_v2.0_Chr3g0466361' => 'rch', 'RcHm_v2.0_Chr3g0485571' => 'rch', 'RcHm_v2.0_Chr4g0416551' => 'rch', 'RcHm_v2.0_Chr5g0065831' => 'rch', 'Rhsim01G0230500' => 'rsi', 'Rhsim05G0194000' => 'rsi', 'Rhsim08G0250400' => 'rsi', 'Sabra02G0131000' => 'sbr', 'Sabra06G0066300' => 'sbr', 'Sabra08G0115500' => 'sbr', 'Sabra09G0023900' => 'sbr', 'Sabra10G0054000' => 'sbr', 'Sabra14G0081500' => 'sbr', 'Sabra16G0147100' => 'sbr', 'SalBow2G2957' => 'sbo', 'SalBow4G3320' => 'sbo', 'SalBow8G1894' => 'sbo', 'Sc07g0007950' => 'sci', 'Sc12g0001360' => 'sci', 'Sc13g0004330' => 'sci', 'Sc20g0005010' => 'sci', 'Sed0000361' => 'sed', 'Sed0001706' => 'sed', 'Sed0002422' => 'sed', 'Sed0004029' => 'sed', 'Sed0004602' => 'sed', 'Sed0004943' => 'sed', 'Sed0008646' => 'sed', 'Sed0023313' => 'sed', 'Sed0024843' => 'sed', 'SEGI_00081' => 'sgi', 'SEGI_00947' => 'sgi', 'SEGI_04046' => 'sgi', 'SEGI_06880' => 'sgi', 'SEGI_09736' => 'sgi', 'SEGI_12741' => 'sgi', 'SEGI_14530' => 'sgi', 'SEGI_20705' => 'sgi', 'SEGI_26088' => 'sgi', 'SEGI_28323' => 'sgi', 'SEGI_33343' => 'sgi', 'SGA_v2.0_scaffold126G33775' => 'sas', 'SGA_v2.0_scaffold2G01337' => 'sas', 'SGA_v2.0_scaffold38G15006' => 'sas', 'SGA_v2.0_scaffold39G15264' => 'sas', 'SGA_v2.0_scaffold453G51880' => 'sas', 'SHI12696' => 'shi', 'SMO367G1096' => 'smo', 'Solyc01g068630.3' => 'sly', 'Solyc05g011880.3' => 'sly', 'Solyc06g076300.3' => 'sly', 'Solyc09g010940.4' => 'sly', 'Solyc09g075890.3' => 'sly', 'Sopen01g030560' => 'spe', 'Sopen05g006630' => 'spe', 'Sopen06g032720' => 'spe', 'Sopen09g005660' => 'spe', 'Sopen09g030690' => 'spe', 'Sp4g14540' => 'spa', 'Sp4g20030' => 'spa', 'Sp5g01320' => 'spa', 'Sp6g21170' => 'spa', 'Sp6g21180' => 'spa', 'Sp6g21190' => 'spa', 'Sp6g40220' => 'spa', 'TAR362G0122' => 'tar', 'TAR362G1338' => 'tar', 'TAR369G0590' => 'tar', 'TAR371G0824' => 'tar', 'TAR622G1429' => 'tar', 'TAR623G0734' => 'tar', 'TAR625G0441' => 'tar', 'TAR629G0976' => 'tar', 'TAR633G1195' => 'tar', 'TAR636G2660' => 'tar', 'THA.LOC104799440' => 'tha', 'THA.LOC104800966' => 'tha', 'THA.LOC104806559' => 'tha', 'THA.LOC104810765' => 'tha', 'THA.LOC104816266' => 'tha', 'THA.LOC104817419' => 'tha', 'THA.LOC104827021' => 'tha', 'Thecc.01G327400' => 'tca', 'Thecc.04G229200' => 'tca', 'Thecc.05G037400' => 'tca', 'Thecc.09G318600' => 'tca', 'Thecc.09G318700' => 'tca', 'Thhalv10006238m.g' => 'esa', 'Thhalv10014321m.g' => 'esa', 'Thhalv10014335m.g' => 'esa', 'Thhalv10015826m.g' => 'esa', 'Thhalv10017107m.g' => 'esa', 'Thhalv10017180m.g' => 'esa', 'Thhalv10029339m.g' => 'esa', 'TPR.G1699' => 'tpr', 'TPR.G23609' => 'tpr', 'TPR.G3081' => 'tpr', 'TPR.G40397' => 'tpr', 'TPR.G5522' => 'tpr', 'TPR.G5618' => 'tpr', 'TPR.G5626' => 'tpr', 'TWI09G1632' => 'twi', 'TWI23G1230' => 'twi', 'TWI53G1064' => 'twi', 'TWI59G0751' => 'twi', 'TWI74G0947' => 'twi', 'TWI77G0337' => 'twi', 'TWI79G1254' => 'twi', 'unitig_0.g2341' => 'ugi', 'unitig_26.g10006' => 'ugi', 'unitig_26.g10008' => 'ugi', 'unitig_26.g9192' => 'ugi', 'vmacro14547' => 'vma', 'vmacro15333' => 'vma', 'vmacro18743' => 'vma', 'vmacro20166' => 'vma', 'VMungo0331G0523' => 'vmu', 'VMungo0331G1202' => 'vmu', 'VMungo0720G1228' => 'vmu', 'VMungo0720G1514' => 'vmu', 'VMungo1080G0169' => 'vmu', 'VMungo1127G1475' => 'vmu', 'VMungo1383G1208' => 'vmu', 'VMungo1383G1698' => 'vmu', 'Zm00001eb012270' => 'zma', 'Zm00001eb054100' => 'zma', 'Zm00001eb063350' => 'zma', 'Zm00001eb328560' => 'zma', 'Zm00001eb342820' => 'zma', 'Zm00001eb362210' => 'zma', 'Zm00001eb397730' => 'zma', 'Zm00001eb399750' => 'zma' ), 'gf_id' => 'HOM05D000959', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000959' ), 'data_identifier' => 'HOM05D000959', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000959', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '622', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p07100' => 'bna', 'A03p11720' => 'bna', 'A05p08300' => 'bna', 'A05p13380' => 'bna', 'A09p54130' => 'bna', 'A10p16690' => 'bna', 'A10p16700' => 'bna', 'A10p33390' => 'bna', 'Aa31LG10G16020' => 'aar', 'Aa31LG1G11810' => 'aar', 'Aa31LG1G11830' => 'aar', 'Aa31LG1G22510' => 'aar', 'Aa31LG5G4890' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5793' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2310' => 'aag', 'Actinidia08499' => 'ach', 'Actinidia11262' => 'ach', 'Actinidia23926' => 'ach', 'Actinidia34420' => 'ach', 'Actinidia36970' => 'ach', 'Ah.02g111220' => 'amhyb', 'Ah.15g097750' => 'amhyb', 'AL4G27500' => 'aly', 'AL6G11470' => 'aly', 'AL8G35950' => 'aly', 'AL8G35960' => 'aly', 'AL8G35970' => 'aly', 'Aqoxy1G00912' => 'aox', 'Aqoxy2G02253' => 'aox', 'Aqoxy2G02411' => 'aox', 'Aqoxy5G00485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BZ66YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K8ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM4FUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6BF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HFV7XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25JBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0YNNV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MAKK6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P70IT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP2Z6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V61LZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YWP64R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3S9AI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7PGHH' => 'arhy', 'AT2G32150' => 'ath', 'AT3G62040' => 'ath', 'AT5G02230' => 'ath', 'AT5G59480' => 'ath', 'AT5G59490' => 'ath', 'ATR0332G060' => 'atr', 'ATR0559G190' => 'atr', 'ATR0693G294' => 'atr', 'Atru.chr3.3975' => 'acertr', 'Atru.chr3.3976' => 'acertr', 'Atru.chr3.3977' => 'acertr', 'Atru.chr4.2498' => 'acertr', 'Atru.chr5.838' => 'acertr', 'Atru.chr8.1990' => 'acertr', 'Atru.chr8.1991' => 'acertr', 'Atru.chr8.1992' => 'acertr', 'AUR62001759' => 'cqu', 'AUR62009545' => 'cqu', 'AUR62010474' => 'cqu', 'AUR62025820' => 'cqu', 'AUR62030422' => 'cqu', 'AUR62033605' => 'cqu', 'AUR62038615' => 'cqu', 'AUR62041347' => 'cqu', 'BcaB01g04574' => 'bca', 'BcaB02g09263' => 'bca', 'BcaB02g10453' => 'bca', 'BcaB05g22513' => 'bca', 'BcaB08g36253' => 'bca', 'BcaB08g36254' => 'bca', 'BcaC01g06519' => 'bca', 'BcaC02g11889' => 'bca', 'BcaC03g14010' => 'bca', 'BcaC03g18439' => 'bca', 'BcaC04g19765' => 'bca', 'BcaC09g48432' => 'bca', 'BcaNung07302' => 'bca', 'BolC2t06040H' => 'bol', 'BolC2t07346H' => 'bol', 'BolC3t13817H' => 'bol', 'BolC4t22625H' => 'bol', 'BolC4t23297H' => 'bol', 'BolC8t51278H' => 'bol', 'BolC9t58050H' => 'bol', 'BolC9t58051H' => 'bol', 'BolC9t60163H' => 'bol', 'BraA02t04712Z' => 'bra', 'BraA02t05791Z' => 'bra', 'BraA03t10483Z' => 'bra', 'BraA05t19795Z' => 'bra', 'BraA05t20276Z' => 'bra', 'BraA09t40827Z' => 'bra', 'BraA10t43750Z' => 'bra', 'BraA10t43751Z' => 'bra', 'BraA10t45370Z' => 'bra', 'C02p00400' => 'bna', 'C02p12460' => 'bna', 'C03p13680' => 'bna', 'C04p10270' => 'bna', 'C04p17500' => 'bna', 'C08p37010' => 'bna', 'C09p51880' => 'bna', 'C09p51890' => 'bna', 'C09p74300' => 'bna', 'CAN.G179.26' => 'can', 'CAN.G3384.1' => 'can', 'CAN.G394.68' => 'can', 'CAN.G907.13' => 'can', 'CANSAT11G0012' => 'cansat', 'CANSAT25G1586' => 'cansat', 'CANSAT35G0735' => 'cansat', 'CANSAT54G0556' => 'cansat', 'CANSAT64G0356' => 'cansat', 'CANSAT78G2042' => 'cansat', 'CARHR125920' => 'chi', 'CARHR131910' => 'chi', 'CARHR172390' => 'chi', 'CARHR211140' => 'chi', 'CARHR285850' => 'chi', 'CARHR285860' => 'chi', 'Carub.0004s1347' => 'cru', 'Carub.0004s1960' => 'cru', 'Carub.0005s2880' => 'cru', 'Carub.0006s0107' => 'cru', 'Carub.0008s2015' => 'cru', 'Carub.0008s2016' => 'cru', 'Carub.0008s2017' => 'cru', 'Ca_01315_v3' => 'car', 'Ca_05063_v3' => 'car', 'Ca_10231_v3' => 'car', 'Ca_10913_v3' => 'car', 'Ca_19156_v3' => 'car', 'Ca_23644_v3' => 'car', 'Ca_26735_v3' => 'car', 'Cc01_g13130' => 'ccan', 'Cc02_g21690' => 'ccan', 'Cc03_g03600' => 'ccan', 'Cc06_g02510' => 'ccan', 'CDE02G1265' => 'cde', 'CDE05G0415' => 'cde', 'CDE08G1082' => 'cde', 'Cfa005780' => 'cfa', 'Cfa011522' => 'cfa', 'Cfa011523' => 'cfa', 'Cfa015627' => 'cfa', 'Cfa017359' => 'cfa', 'Ciclev10005687m.g' => 'ccl', 'Ciclev10012173m.g' => 'ccl', 'Ciclev10021621m.g' => 'ccl', 'Ciclev10028968m.g' => 'ccl', 'Ciclev10029907m.g' => 'ccl', 'CiPaw.01G164800' => 'cil', 'CiPaw.07G083700' => 'cil', 'CiPaw.07G127000' => 'cil', 'CiPaw.07G136900' => 'cil', 'CiPaw.08G081700' => 'cil', 'CiPaw.09G194600' => 'cil', 'CiPaw.10G146500' => 'cil', 'CiPaw.13G091500' => 'cil', 'CiPaw.13G091600' => 'cil', 'ClCG00G003390' => 'cla', 'ClCG01G007220' => 'cla', 'ClCG03G001370' => 'cla', 'ClCG04G008100' => 'cla', 'ClCG06G006110' => 'cla', 'ClCG06G006130' => 'cla', 'ClCG10G021210' => 'cla', 'COL.COLO4_07648' => 'col', 'COL.COLO4_07650' => 'col', 'COL.COLO4_07651' => 'col', 'COL.COLO4_14780' => 'col', 'COL.COLO4_18546' => 'col', 'COL.COLO4_18547' => 'col', 'COL.COLO4_23103' => 'col', 'COL.COLO4_30419' => 'col', 'COL.COLO4_34232' => 'col', 'Cpa.g.sc169.20' => 'cpa', 'Cpa.g.sc57.45' => 'cpa', 'Cpa.g.sc58.124' => 'cpa', 'Cpa.g.sc58.125' => 'cpa', 'Cpa.g.sc81.118' => 'cpa', 'Cpa.g.sc81.119' => 'cpa', 'Cre12.g524700' => 'cre', 'CsaV3_1G034430' => 'csa', 'CsaV3_1G034440' => 'csa', 'CsaV3_1G034450' => 'csa', 'CsaV3_3G034830' => 'csa', 'CsaV3_4G025090' => 'csa', 'CsaV3_5G018660' => 'csa', 'CsaV3_6G038160' => 'csa', 'CSS0003447' => 'camsi', 'CSS0017840' => 'camsi', 'CSS0019260' => 'camsi', 'CSS0040375' => 'camsi', 'CSS0042533' => 'camsi', 'DCAR_005960' => 'dca', 'DCAR_012104' => 'dca', 'DCAR_012105' => 'dca', 'DCAR_012293' => 'dca', 'DCAR_015632' => 'dca', 'DCAR_024602' => 'dca', 'DCAR_028752' => 'dca', 'Dinv06261' => 'din', 'Dinv13982' => 'din', 'Dinv17029' => 'din', 'Dinv18463' => 'din', 'Dinv33181' => 'din', 'Dinv35585' => 'din', 'Dinv37161' => 'din', 'Dinv42977' => 'din', 'Dinv43122' => 'din', 'Dinv44517' => 'din', 'Duzib093G0256' => 'dzi', 'Duzib106G1254' => 'dzi', 'Duzib128G1789' => 'dzi', 'Duzib133G0633' => 'dzi', 'Duzib138G0510' => 'dzi', 'Duzib150G1084' => 'dzi', 'Duzib168G0488' => 'dzi', 'Duzib168G1523' => 'dzi', 'Duzib170G0133' => 'dzi', 'ECA234G1433' => 'eca', 'ECA236G1432' => 'eca', 'ECA236G2256' => 'eca', 'ECA236G2365' => 'eca', 'ECA236G4830' => 'eca', 'ECA248G1505' => 'eca', 'EL10Ac3g06431' => 'bvu', 'EL10Ac5g12577' => 'bvu', 'EL10Ac6g13533' => 'bvu', 'EL10Ac7g16045' => 'bvu', 'Eucgr.A01281' => 'egr', 'Eucgr.B02326' => 'egr', 'Eucgr.H03532' => 'egr', 'Eucgr.K00553' => 'egr', 'Eucgr.K03116' => 'egr', 'FAN02G3963' => 'fan', 'FAN05G0438' => 'fan', 'FAN09G2434' => 'fan', 'FAN12G3984' => 'fan', 'FAN14G0798' => 'fan', 'FAN17G0652' => 'fan', 'FAN19G1988' => 'fan', 'FAN22G0632' => 'fan', 'FAN23G0387' => 'fan', 'FAN26G1323' => 'fan', 'FAN28G0666' => 'fan', 'FvH4_1g26080' => 'fve', 'FvH4_3g36780' => 'fve', 'FvH4_4g15270' => 'fve', 'FvH4_6g13490' => 'fve', 'Glyma.01G098700' => 'gma', 'Glyma.03G065900' => 'gma', 'Glyma.03G073754' => 'gma', 'Glyma.03G073758' => 'gma', 'Glyma.03G083200' => 'gma', 'Glyma.03G225500' => 'gma', 'Glyma.05G037766' => 'gma', 'Glyma.07G133500' => 'gma', 'Glyma.10G139400' => 'gma', 'Glyma.10G248900' => 'gma', 'Glyma.11G137800' => 'gma', 'Glyma.12G061300' => 'gma', 'Glyma.13G337900' => 'gma', 'Glyma.15G036600' => 'gma', 'Glyma.18G182800' => 'gma', 'Glyma.19G222500' => 'gma', 'Glyma.20G144800' => 'gma', 'Gohir.A01G222000' => 'ghi', 'Gohir.A03G044000' => 'ghi', 'Gohir.A03G044100' => 'ghi', 'Gohir.A04G083100' => 'ghi', 'Gohir.A07G127200' => 'ghi', 'Gohir.A07G132400' => 'ghi', 'Gohir.A08G000700' => 'ghi', 'Gohir.A11G327300' => 'ghi', 'Gohir.D01G211500' => 'ghi', 'Gohir.D03G123400' => 'ghi', 'Gohir.D03G123500' => 'ghi', 'Gohir.D04G121800' => 'ghi', 'Gohir.D07G131500' => 'ghi', 'Gohir.D07G136600' => 'ghi', 'Gohir.D08G011600' => 'ghi', 'Gohir.D11G346200' => 'ghi', 'Gorai.001G142800' => 'gra', 'Gorai.001G148700' => 'gra', 'Gorai.002G257300' => 'gra', 'Gorai.003G130000' => 'gra', 'Gorai.003G130100' => 'gra', 'Gorai.004G005300' => 'gra', 'Gorai.007G376500' => 'gra', 'Gorai.012G104700' => 'gra', 'GSVIVG01017946001' => 'vvi', 'GSVIVG01024928001' => 'vvi', 'GSVIVG01028227001' => 'vvi', 'GSVIVG01034151001' => 'vvi', 'HanXRQChr05g0135031' => 'han', 'HanXRQChr05g0135041' => 'han', 'HanXRQChr05g0140021' => 'han', 'HanXRQChr06g0178981' => 'han', 'HanXRQChr07g0188251' => 'han', 'HanXRQChr08g0235311' => 'han', 'HanXRQChr09g0271011' => 'han', 'HanXRQChr10g0293321' => 'han', 'HanXRQChr13g0388171' => 'han', 'Haze_00916' => 'cav', 'Haze_05063' => 'cav', 'Haze_20814' => 'cav', 'Haze_24128' => 'cav', 'Hma1.2p1_0745F.1_g212010' => 'hma', 'Hma1.2p1_0757F.1_g213260' => 'hma', 'Hma1.2p1_0936F.1_g238840' => 'hma', 'Hma1.2p1_1735F.1_g299890' => 'hma', 'Hma1.2p1_1861F.1_g305685' => 'hma', 'HPP92_003397' => 'vpl', 'HPP92_012597' => 'vpl', 'HPP92_015520' => 'vpl', 'HPP92_015539' => 'vpl', 'HPP92_020373' => 'vpl', 'Hund04938' => 'sun', 'Hund10677' => 'sun', 'Hund11033' => 'sun', 'Hund12155' => 'sun', 'Lalb_Chr01g0022551' => 'lal', 'Lalb_Chr03g0042341' => 'lal', 'Lalb_Chr07g0192931' => 'lal', 'Lalb_Chr12g0209551' => 'lal', 'Lalb_Chr19g0125251' => 'lal', 'Lalb_Chr19g0137891' => 'lal', 'Lalb_Chr21g0304641' => 'lal', 'Lalb_Chr21g0309881' => 'lal', 'Lj1A5T12' => 'lonja', 'Lj1C148G10' => 'lonja', 'Lj2A93T83' => 'lonja', 'Lj3A738G68' => 'lonja', 'Lj3C966T1' => 'lonja', 'Lj3g0018958' => 'lja', 'Lj3g0021831' => 'lja', 'Lj3g0025443' => 'lja', 'Lj4g0026809' => 'lja', 'Lj5g0012558' => 'lja', 'Lj5g0021586' => 'lja', 'Lsat_1_v5_gn_5_156840' => 'lsa', 'Lsat_1_v5_gn_8_73460' => 'lsa', 'Lsat_1_v5_gn_8_73481' => 'lsa', 'Lsat_1_v5_gn_9_31601' => 'lsa', 'Lsat_1_v5_gn_9_77320' => 'lsa', 'Manes.01G171300' => 'mes', 'Manes.01G171400' => 'mes', 'Manes.01G236100' => 'mes', 'Manes.02G130500' => 'mes', 'Manes.02G130600' => 'mes', 'Manes.03G180200' => 'mes', 'Manes.05G007000' => 'mes', 'Manes.08G084400' => 'mes', 'Manes.09G092600' => 'mes', 'Manes.15G027900' => 'mes', 'MBI04_g40948_MAGBIO' => 'mbi', 'MBI14_g12123_MAGBIO' => 'mbi', 'MBI18_g28915_MAGBIO' => 'mbi', 'MCO09G053' => 'mco', 'MCO11G782' => 'mco', 'MCO15G215' => 'mco', 'MD03G1088500' => 'mdo', 'MD03G1088600' => 'mdo', 'MD04G1130800' => 'mdo', 'MD09G1291700' => 'mdo', 'MD11G1097500' => 'mdo', 'MD11G1097600' => 'mdo', 'MD12G1143900' => 'mdo', 'MD13G1191400' => 'mdo', 'MD16G1191500' => 'mdo', 'Medtr1g085570' => 'mtr', 'Medtr1g104610' => 'mtr', 'Medtr2g097520' => 'mtr', 'Medtr4g021800' => 'mtr', 'Medtr4g021825' => 'mtr', 'Medtr4g064270' => 'mtr', 'Medtr4g064380' => 'mtr', 'Medtr7g062150' => 'mtr', 'MELO3C003138.2' => 'cme', 'MELO3C005187.2' => 'cme', 'MELO3C009252.2' => 'cme', 'MELO3C014481.2' => 'cme', 'MELO3C020616.2' => 'cme', 'MELO3C020617.2' => 'cme', 'MELO3C020618.2' => 'cme', 'Migut.G00328' => 'egut', 'Migut.J00320' => 'egut', 'Migut.L01000' => 'egut', 'Migut.L01953' => 'egut', 'MSTRG.10253' => 'ama', 'MSTRG.19077' => 'ama', 'MSTRG.26780' => 'ama', 'MSTRG.4023' => 'ama', 'MSTRG.5655' => 'ama', 'MSTRG.9992' => 'ama', 'Nitab4.5_0000043g0310' => 'nta', 'Nitab4.5_0000463g0080' => 'nta', 'Nitab4.5_0000705g0170' => 'nta', 'Nitab4.5_0001326g0060' => 'nta', 'Nitab4.5_0001628g0030' => 'nta', 'Nitab4.5_0002103g0110' => 'nta', 'Nitab4.5_0002946g0030' => 'nta', 'Nitab4.5_0004639g0030' => 'nta', 'Nn2g11149' => 'nnu', 'Nn2g13389' => 'nnu', 'Nn4g25326' => 'nnu', 'Nn4g26290' => 'nnu', 'Nn5g29865' => 'nnu', 'Oeu004163.1' => 'oeu', 'Oeu006901.1' => 'oeu', 'Oeu010096.1' => 'oeu', 'Oeu024340.1' => 'oeu', 'Oeu048369.1' => 'oeu', 'Os01g0973000' => 'osa', 'Os03g0273800' => 'osa', 'Os03g0701200' => 'osa', 'Os03g0834050' => 'osa', 'Os07g0634400' => 'osa', 'Peaxi162Scf00092g01414' => 'pax', 'Peaxi162Scf00165g00818' => 'pax', 'Peaxi162Scf00309g00516' => 'pax', 'Peaxi162Scf00774g00218' => 'pax', 'PGR004G1824' => 'pgr', 'PGR004G2606' => 'pgr', 'PGR031G2716' => 'pgr', 'PGR102G2460' => 'pgr', 'PGR142G2599' => 'pgr', 'PGSC0003DMG400000843' => 'stu', 'PGSC0003DMG400008829' => 'stu', 'PGSC0003DMG400030418' => 'stu', 'PGSC0003DMG400031834' => 'stu', 'PGSC0003DMG401028300' => 'stu', 'PGSC0003DMG402028300' => 'stu', 'Phvul.001G219300' => 'pvu', 'Phvul.007G056000' => 'pvu', 'Phvul.007G208000' => 'pvu', 'Phvul.008G119500' => 'pvu', 'Phvul.010G011200' => 'pvu', 'Phvul.010G014800' => 'pvu', 'Phvul.011G062900' => 'pvu', 'Phvul.L007043' => 'pvu', 'Potri.001G242300' => 'ptr', 'Potri.002G185300' => 'ptr', 'Potri.006G086900' => 'ptr', 'Potri.008G151700' => 'ptr', 'Potri.009G033500' => 'ptr', 'Potri.010G089300' => 'ptr', 'Potri.014G110800' => 'ptr', 'Pp3c27_8130' => 'ppa', 'Pp3c6_27410' => 'ppa', 'PRCOL_00001659' => 'pco', 'PRCOL_00001927' => 'pco', 'PRCOL_00003649' => 'pco', 'Prupe.1G011600' => 'ppe', 'Prupe.3G000800' => 'ppe', 'Prupe.3G001100' => 'ppe', 'Prupe.6G072700' => 'ppe', 'Prupe.6G072800' => 'ppe', 'Prupe.6G257300' => 'ppe', 'Prupe.8G033000' => 'ppe', 'Psat0s2633g0080' => 'psa', 'Psat0s3396g0080' => 'psa', 'Psat0s3396g0200' => 'psa', 'Psat3g139080' => 'psa', 'Psat5g285080' => 'psa', 'Psat6g157760' => 'psa', 'Psat6g208440' => 'psa', 'Psat7g215320' => 'psa', 'Psat7g215400' => 'psa', 'Psat7g235600' => 'psa', 'Psat7g235760' => 'psa', 'PSO063G4603' => 'pso', 'PSO210G0182' => 'pso', 'PSO210G0196' => 'pso', 'PSO339G0394' => 'pso', 'PSO339G4127' => 'pso', 'PSO513G0064' => 'pso', 'PSO761G0079' => 'pso', 'QL01p031003' => 'qlo', 'QL01p031078' => 'qlo', 'QL06p003004' => 'qlo', 'QL07p048731' => 'qlo', 'QL09p037427' => 'qlo', 'RcHm_v2.0_Chr3g0466361' => 'rch', 'RcHm_v2.0_Chr3g0485571' => 'rch', 'RcHm_v2.0_Chr4g0416551' => 'rch', 'RcHm_v2.0_Chr5g0065831' => 'rch', 'Rhsim01G0230500' => 'rsi', 'Rhsim05G0194000' => 'rsi', 'Rhsim08G0250400' => 'rsi', 'Sabra02G0131000' => 'sbr', 'Sabra06G0066300' => 'sbr', 'Sabra08G0115500' => 'sbr', 'Sabra09G0023900' => 'sbr', 'Sabra10G0054000' => 'sbr', 'Sabra14G0081500' => 'sbr', 'Sabra16G0147100' => 'sbr', 'SalBow2G2957' => 'sbo', 'SalBow4G3320' => 'sbo', 'SalBow8G1894' => 'sbo', 'Sc07g0007950' => 'sci', 'Sc12g0001360' => 'sci', 'Sc13g0004330' => 'sci', 'Sc20g0005010' => 'sci', 'Sed0000361' => 'sed', 'Sed0001706' => 'sed', 'Sed0002422' => 'sed', 'Sed0004029' => 'sed', 'Sed0004602' => 'sed', 'Sed0004943' => 'sed', 'Sed0008646' => 'sed', 'Sed0023313' => 'sed', 'Sed0024843' => 'sed', 'SEGI_00081' => 'sgi', 'SEGI_00947' => 'sgi', 'SEGI_04046' => 'sgi', 'SEGI_06880' => 'sgi', 'SEGI_09736' => 'sgi', 'SEGI_12741' => 'sgi', 'SEGI_14530' => 'sgi', 'SEGI_20705' => 'sgi', 'SEGI_26088' => 'sgi', 'SEGI_28323' => 'sgi', 'SEGI_33343' => 'sgi', 'SGA_v2.0_scaffold126G33775' => 'sas', 'SGA_v2.0_scaffold2G01337' => 'sas', 'SGA_v2.0_scaffold38G15006' => 'sas', 'SGA_v2.0_scaffold39G15264' => 'sas', 'SGA_v2.0_scaffold453G51880' => 'sas', 'SHI12696' => 'shi', 'SMO367G1096' => 'smo', 'Solyc01g068630.3' => 'sly', 'Solyc05g011880.3' => 'sly', 'Solyc06g076300.3' => 'sly', 'Solyc09g010940.4' => 'sly', 'Solyc09g075890.3' => 'sly', 'Sopen01g030560' => 'spe', 'Sopen05g006630' => 'spe', 'Sopen06g032720' => 'spe', 'Sopen09g005660' => 'spe', 'Sopen09g030690' => 'spe', 'Sp4g14540' => 'spa', 'Sp4g20030' => 'spa', 'Sp5g01320' => 'spa', 'Sp6g21170' => 'spa', 'Sp6g21180' => 'spa', 'Sp6g21190' => 'spa', 'Sp6g40220' => 'spa', 'TAR362G0122' => 'tar', 'TAR362G1338' => 'tar', 'TAR369G0590' => 'tar', 'TAR371G0824' => 'tar', 'TAR622G1429' => 'tar', 'TAR623G0734' => 'tar', 'TAR625G0441' => 'tar', 'TAR629G0976' => 'tar', 'TAR633G1195' => 'tar', 'TAR636G2660' => 'tar', 'THA.LOC104799440' => 'tha', 'THA.LOC104800966' => 'tha', 'THA.LOC104806559' => 'tha', 'THA.LOC104810765' => 'tha', 'THA.LOC104816266' => 'tha', 'THA.LOC104817419' => 'tha', 'THA.LOC104827021' => 'tha', 'Thecc.01G327400' => 'tca', 'Thecc.04G229200' => 'tca', 'Thecc.05G037400' => 'tca', 'Thecc.09G318600' => 'tca', 'Thecc.09G318700' => 'tca', 'Thhalv10006238m.g' => 'esa', 'Thhalv10014321m.g' => 'esa', 'Thhalv10014335m.g' => 'esa', 'Thhalv10015826m.g' => 'esa', 'Thhalv10017107m.g' => 'esa', 'Thhalv10017180m.g' => 'esa', 'Thhalv10029339m.g' => 'esa', 'TPR.G1699' => 'tpr', 'TPR.G23609' => 'tpr', 'TPR.G3081' => 'tpr', 'TPR.G40397' => 'tpr', 'TPR.G5522' => 'tpr', 'TPR.G5618' => 'tpr', 'TPR.G5626' => 'tpr', 'TWI09G1632' => 'twi', 'TWI23G1230' => 'twi', 'TWI53G1064' => 'twi', 'TWI59G0751' => 'twi', 'TWI74G0947' => 'twi', 'TWI77G0337' => 'twi', 'TWI79G1254' => 'twi', 'unitig_0.g2341' => 'ugi', 'unitig_26.g10006' => 'ugi', 'unitig_26.g10008' => 'ugi', 'unitig_26.g9192' => 'ugi', 'vmacro14547' => 'vma', 'vmacro15333' => 'vma', 'vmacro18743' => 'vma', 'vmacro20166' => 'vma', 'VMungo0331G0523' => 'vmu', 'VMungo0331G1202' => 'vmu', 'VMungo0720G1228' => 'vmu', 'VMungo0720G1514' => 'vmu', 'VMungo1080G0169' => 'vmu', 'VMungo1127G1475' => 'vmu', 'VMungo1383G1208' => 'vmu', 'VMungo1383G1698' => 'vmu', 'Zm00001eb012270' => 'zma', 'Zm00001eb054100' => 'zma', 'Zm00001eb063350' => 'zma', 'Zm00001eb328560' => 'zma', 'Zm00001eb342820' => 'zma', 'Zm00001eb362210' => 'zma', 'Zm00001eb397730' => 'zma', 'Zm00001eb399750' => 'zma' ) $gf_id = 'HOM05D000959' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000959' ) $data_identifier = 'HOM05D000959' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 5, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 5, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 10, 'mbi' => (int) 3, 'mco' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 2, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 3, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 11, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399750' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000959', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '622', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p07100' => 'bna', 'A03p11720' => 'bna', 'A05p08300' => 'bna', 'A05p13380' => 'bna', 'A09p54130' => 'bna', 'A10p16690' => 'bna', 'A10p16700' => 'bna', 'A10p33390' => 'bna', 'Aa31LG10G16020' => 'aar', 'Aa31LG1G11810' => 'aar', 'Aa31LG1G11830' => 'aar', 'Aa31LG1G22510' => 'aar', 'Aa31LG5G4890' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5793' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2310' => 'aag', 'Actinidia08499' => 'ach', 'Actinidia11262' => 'ach', 'Actinidia23926' => 'ach', 'Actinidia34420' => 'ach', 'Actinidia36970' => 'ach', 'Ah.02g111220' => 'amhyb', 'Ah.15g097750' => 'amhyb', 'AL4G27500' => 'aly', 'AL6G11470' => 'aly', 'AL8G35950' => 'aly', 'AL8G35960' => 'aly', 'AL8G35970' => 'aly', 'Aqoxy1G00912' => 'aox', 'Aqoxy2G02253' => 'aox', 'Aqoxy2G02411' => 'aox', 'Aqoxy5G00485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BZ66YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K8ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM4FUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6BF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HFV7XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25JBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0YNNV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MAKK6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P70IT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP2Z6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V61LZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YWP64R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3S9AI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7PGHH' => 'arhy', 'AT2G32150' => 'ath', 'AT3G62040' => 'ath', 'AT5G02230' => 'ath', 'AT5G59480' => 'ath', 'AT5G59490' => 'ath', 'ATR0332G060' => 'atr', 'ATR0559G190' => 'atr', 'ATR0693G294' => 'atr', 'Atru.chr3.3975' => 'acertr', 'Atru.chr3.3976' => 'acertr', 'Atru.chr3.3977' => 'acertr', 'Atru.chr4.2498' => 'acertr', 'Atru.chr5.838' => 'acertr', 'Atru.chr8.1990' => 'acertr', 'Atru.chr8.1991' => 'acertr', 'Atru.chr8.1992' => 'acertr', 'AUR62001759' => 'cqu', 'AUR62009545' => 'cqu', 'AUR62010474' => 'cqu', 'AUR62025820' => 'cqu', 'AUR62030422' => 'cqu', 'AUR62033605' => 'cqu', 'AUR62038615' => 'cqu', 'AUR62041347' => 'cqu', 'BcaB01g04574' => 'bca', 'BcaB02g09263' => 'bca', 'BcaB02g10453' => 'bca', 'BcaB05g22513' => 'bca', 'BcaB08g36253' => 'bca', 'BcaB08g36254' => 'bca', 'BcaC01g06519' => 'bca', 'BcaC02g11889' => 'bca', 'BcaC03g14010' => 'bca', 'BcaC03g18439' => 'bca', 'BcaC04g19765' => 'bca', 'BcaC09g48432' => 'bca', 'BcaNung07302' => 'bca', 'BolC2t06040H' => 'bol', 'BolC2t07346H' => 'bol', 'BolC3t13817H' => 'bol', 'BolC4t22625H' => 'bol', 'BolC4t23297H' => 'bol', 'BolC8t51278H' => 'bol', 'BolC9t58050H' => 'bol', 'BolC9t58051H' => 'bol', 'BolC9t60163H' => 'bol', 'BraA02t04712Z' => 'bra', 'BraA02t05791Z' => 'bra', 'BraA03t10483Z' => 'bra', 'BraA05t19795Z' => 'bra', 'BraA05t20276Z' => 'bra', 'BraA09t40827Z' => 'bra', 'BraA10t43750Z' => 'bra', 'BraA10t43751Z' => 'bra', 'BraA10t45370Z' => 'bra', 'C02p00400' => 'bna', 'C02p12460' => 'bna', 'C03p13680' => 'bna', 'C04p10270' => 'bna', 'C04p17500' => 'bna', 'C08p37010' => 'bna', 'C09p51880' => 'bna', 'C09p51890' => 'bna', 'C09p74300' => 'bna', 'CAN.G179.26' => 'can', 'CAN.G3384.1' => 'can', 'CAN.G394.68' => 'can', 'CAN.G907.13' => 'can', 'CANSAT11G0012' => 'cansat', 'CANSAT25G1586' => 'cansat', 'CANSAT35G0735' => 'cansat', 'CANSAT54G0556' => 'cansat', 'CANSAT64G0356' => 'cansat', 'CANSAT78G2042' => 'cansat', 'CARHR125920' => 'chi', 'CARHR131910' => 'chi', 'CARHR172390' => 'chi', 'CARHR211140' => 'chi', 'CARHR285850' => 'chi', 'CARHR285860' => 'chi', 'Carub.0004s1347' => 'cru', 'Carub.0004s1960' => 'cru', 'Carub.0005s2880' => 'cru', 'Carub.0006s0107' => 'cru', 'Carub.0008s2015' => 'cru', 'Carub.0008s2016' => 'cru', 'Carub.0008s2017' => 'cru', 'Ca_01315_v3' => 'car', 'Ca_05063_v3' => 'car', 'Ca_10231_v3' => 'car', 'Ca_10913_v3' => 'car', 'Ca_19156_v3' => 'car', 'Ca_23644_v3' => 'car', 'Ca_26735_v3' => 'car', 'Cc01_g13130' => 'ccan', 'Cc02_g21690' => 'ccan', 'Cc03_g03600' => 'ccan', 'Cc06_g02510' => 'ccan', 'CDE02G1265' => 'cde', 'CDE05G0415' => 'cde', 'CDE08G1082' => 'cde', 'Cfa005780' => 'cfa', 'Cfa011522' => 'cfa', 'Cfa011523' => 'cfa', 'Cfa015627' => 'cfa', 'Cfa017359' => 'cfa', 'Ciclev10005687m.g' => 'ccl', 'Ciclev10012173m.g' => 'ccl', 'Ciclev10021621m.g' => 'ccl', 'Ciclev10028968m.g' => 'ccl', 'Ciclev10029907m.g' => 'ccl', 'CiPaw.01G164800' => 'cil', 'CiPaw.07G083700' => 'cil', 'CiPaw.07G127000' => 'cil', 'CiPaw.07G136900' => 'cil', 'CiPaw.08G081700' => 'cil', 'CiPaw.09G194600' => 'cil', 'CiPaw.10G146500' => 'cil', 'CiPaw.13G091500' => 'cil', 'CiPaw.13G091600' => 'cil', 'ClCG00G003390' => 'cla', 'ClCG01G007220' => 'cla', 'ClCG03G001370' => 'cla', 'ClCG04G008100' => 'cla', 'ClCG06G006110' => 'cla', 'ClCG06G006130' => 'cla', 'ClCG10G021210' => 'cla', 'COL.COLO4_07648' => 'col', 'COL.COLO4_07650' => 'col', 'COL.COLO4_07651' => 'col', 'COL.COLO4_14780' => 'col', 'COL.COLO4_18546' => 'col', 'COL.COLO4_18547' => 'col', 'COL.COLO4_23103' => 'col', 'COL.COLO4_30419' => 'col', 'COL.COLO4_34232' => 'col', 'Cpa.g.sc169.20' => 'cpa', 'Cpa.g.sc57.45' => 'cpa', 'Cpa.g.sc58.124' => 'cpa', 'Cpa.g.sc58.125' => 'cpa', 'Cpa.g.sc81.118' => 'cpa', 'Cpa.g.sc81.119' => 'cpa', 'Cre12.g524700' => 'cre', 'CsaV3_1G034430' => 'csa', 'CsaV3_1G034440' => 'csa', 'CsaV3_1G034450' => 'csa', 'CsaV3_3G034830' => 'csa', 'CsaV3_4G025090' => 'csa', 'CsaV3_5G018660' => 'csa', 'CsaV3_6G038160' => 'csa', 'CSS0003447' => 'camsi', 'CSS0017840' => 'camsi', 'CSS0019260' => 'camsi', 'CSS0040375' => 'camsi', 'CSS0042533' => 'camsi', 'DCAR_005960' => 'dca', 'DCAR_012104' => 'dca', 'DCAR_012105' => 'dca', 'DCAR_012293' => 'dca', 'DCAR_015632' => 'dca', 'DCAR_024602' => 'dca', 'DCAR_028752' => 'dca', 'Dinv06261' => 'din', 'Dinv13982' => 'din', 'Dinv17029' => 'din', 'Dinv18463' => 'din', 'Dinv33181' => 'din', 'Dinv35585' => 'din', 'Dinv37161' => 'din', 'Dinv42977' => 'din', 'Dinv43122' => 'din', 'Dinv44517' => 'din', 'Duzib093G0256' => 'dzi', 'Duzib106G1254' => 'dzi', 'Duzib128G1789' => 'dzi', 'Duzib133G0633' => 'dzi', 'Duzib138G0510' => 'dzi', 'Duzib150G1084' => 'dzi', 'Duzib168G0488' => 'dzi', 'Duzib168G1523' => 'dzi', 'Duzib170G0133' => 'dzi', 'ECA234G1433' => 'eca', 'ECA236G1432' => 'eca', 'ECA236G2256' => 'eca', 'ECA236G2365' => 'eca', 'ECA236G4830' => 'eca', 'ECA248G1505' => 'eca', 'EL10Ac3g06431' => 'bvu', 'EL10Ac5g12577' => 'bvu', 'EL10Ac6g13533' => 'bvu', 'EL10Ac7g16045' => 'bvu', 'Eucgr.A01281' => 'egr', 'Eucgr.B02326' => 'egr', 'Eucgr.H03532' => 'egr', 'Eucgr.K00553' => 'egr', 'Eucgr.K03116' => 'egr', 'FAN02G3963' => 'fan', 'FAN05G0438' => 'fan', 'FAN09G2434' => 'fan', 'FAN12G3984' => 'fan', 'FAN14G0798' => 'fan', 'FAN17G0652' => 'fan', 'FAN19G1988' => 'fan', 'FAN22G0632' => 'fan', 'FAN23G0387' => 'fan', 'FAN26G1323' => 'fan', 'FAN28G0666' => 'fan', 'FvH4_1g26080' => 'fve', 'FvH4_3g36780' => 'fve', 'FvH4_4g15270' => 'fve', 'FvH4_6g13490' => 'fve', 'Glyma.01G098700' => 'gma', 'Glyma.03G065900' => 'gma', 'Glyma.03G073754' => 'gma', 'Glyma.03G073758' => 'gma', 'Glyma.03G083200' => 'gma', 'Glyma.03G225500' => 'gma', 'Glyma.05G037766' => 'gma', 'Glyma.07G133500' => 'gma', 'Glyma.10G139400' => 'gma', 'Glyma.10G248900' => 'gma', 'Glyma.11G137800' => 'gma', 'Glyma.12G061300' => 'gma', 'Glyma.13G337900' => 'gma', 'Glyma.15G036600' => 'gma', 'Glyma.18G182800' => 'gma', 'Glyma.19G222500' => 'gma', 'Glyma.20G144800' => 'gma', 'Gohir.A01G222000' => 'ghi', 'Gohir.A03G044000' => 'ghi', 'Gohir.A03G044100' => 'ghi', 'Gohir.A04G083100' => 'ghi', 'Gohir.A07G127200' => 'ghi', 'Gohir.A07G132400' => 'ghi', 'Gohir.A08G000700' => 'ghi', 'Gohir.A11G327300' => 'ghi', 'Gohir.D01G211500' => 'ghi', 'Gohir.D03G123400' => 'ghi', 'Gohir.D03G123500' => 'ghi', 'Gohir.D04G121800' => 'ghi', 'Gohir.D07G131500' => 'ghi', 'Gohir.D07G136600' => 'ghi', 'Gohir.D08G011600' => 'ghi', 'Gohir.D11G346200' => 'ghi', 'Gorai.001G142800' => 'gra', 'Gorai.001G148700' => 'gra', 'Gorai.002G257300' => 'gra', 'Gorai.003G130000' => 'gra', 'Gorai.003G130100' => 'gra', 'Gorai.004G005300' => 'gra', 'Gorai.007G376500' => 'gra', 'Gorai.012G104700' => 'gra', 'GSVIVG01017946001' => 'vvi', 'GSVIVG01024928001' => 'vvi', 'GSVIVG01028227001' => 'vvi', 'GSVIVG01034151001' => 'vvi', 'HanXRQChr05g0135031' => 'han', 'HanXRQChr05g0135041' => 'han', 'HanXRQChr05g0140021' => 'han', 'HanXRQChr06g0178981' => 'han', 'HanXRQChr07g0188251' => 'han', 'HanXRQChr08g0235311' => 'han', 'HanXRQChr09g0271011' => 'han', 'HanXRQChr10g0293321' => 'han', 'HanXRQChr13g0388171' => 'han', 'Haze_00916' => 'cav', 'Haze_05063' => 'cav', 'Haze_20814' => 'cav', 'Haze_24128' => 'cav', 'Hma1.2p1_0745F.1_g212010' => 'hma', 'Hma1.2p1_0757F.1_g213260' => 'hma', 'Hma1.2p1_0936F.1_g238840' => 'hma', 'Hma1.2p1_1735F.1_g299890' => 'hma', 'Hma1.2p1_1861F.1_g305685' => 'hma', 'HPP92_003397' => 'vpl', 'HPP92_012597' => 'vpl', 'HPP92_015520' => 'vpl', 'HPP92_015539' => 'vpl', 'HPP92_020373' => 'vpl', 'Hund04938' => 'sun', 'Hund10677' => 'sun', 'Hund11033' => 'sun', 'Hund12155' => 'sun', 'Lalb_Chr01g0022551' => 'lal', 'Lalb_Chr03g0042341' => 'lal', 'Lalb_Chr07g0192931' => 'lal', 'Lalb_Chr12g0209551' => 'lal', 'Lalb_Chr19g0125251' => 'lal', 'Lalb_Chr19g0137891' => 'lal', 'Lalb_Chr21g0304641' => 'lal', 'Lalb_Chr21g0309881' => 'lal', 'Lj1A5T12' => 'lonja', 'Lj1C148G10' => 'lonja', 'Lj2A93T83' => 'lonja', 'Lj3A738G68' => 'lonja', 'Lj3C966T1' => 'lonja', 'Lj3g0018958' => 'lja', 'Lj3g0021831' => 'lja', 'Lj3g0025443' => 'lja', 'Lj4g0026809' => 'lja', 'Lj5g0012558' => 'lja', 'Lj5g0021586' => 'lja', 'Lsat_1_v5_gn_5_156840' => 'lsa', 'Lsat_1_v5_gn_8_73460' => 'lsa', 'Lsat_1_v5_gn_8_73481' => 'lsa', 'Lsat_1_v5_gn_9_31601' => 'lsa', 'Lsat_1_v5_gn_9_77320' => 'lsa', 'Manes.01G171300' => 'mes', 'Manes.01G171400' => 'mes', 'Manes.01G236100' => 'mes', 'Manes.02G130500' => 'mes', 'Manes.02G130600' => 'mes', 'Manes.03G180200' => 'mes', 'Manes.05G007000' => 'mes', 'Manes.08G084400' => 'mes', 'Manes.09G092600' => 'mes', 'Manes.15G027900' => 'mes', 'MBI04_g40948_MAGBIO' => 'mbi', 'MBI14_g12123_MAGBIO' => 'mbi', 'MBI18_g28915_MAGBIO' => 'mbi', 'MCO09G053' => 'mco', 'MCO11G782' => 'mco', 'MCO15G215' => 'mco', 'MD03G1088500' => 'mdo', 'MD03G1088600' => 'mdo', 'MD04G1130800' => 'mdo', 'MD09G1291700' => 'mdo', 'MD11G1097500' => 'mdo', 'MD11G1097600' => 'mdo', 'MD12G1143900' => 'mdo', 'MD13G1191400' => 'mdo', 'MD16G1191500' => 'mdo', 'Medtr1g085570' => 'mtr', 'Medtr1g104610' => 'mtr', 'Medtr2g097520' => 'mtr', 'Medtr4g021800' => 'mtr', 'Medtr4g021825' => 'mtr', 'Medtr4g064270' => 'mtr', 'Medtr4g064380' => 'mtr', 'Medtr7g062150' => 'mtr', 'MELO3C003138.2' => 'cme', 'MELO3C005187.2' => 'cme', 'MELO3C009252.2' => 'cme', 'MELO3C014481.2' => 'cme', 'MELO3C020616.2' => 'cme', 'MELO3C020617.2' => 'cme', 'MELO3C020618.2' => 'cme', 'Migut.G00328' => 'egut', 'Migut.J00320' => 'egut', 'Migut.L01000' => 'egut', 'Migut.L01953' => 'egut', 'MSTRG.10253' => 'ama', 'MSTRG.19077' => 'ama', 'MSTRG.26780' => 'ama', 'MSTRG.4023' => 'ama', 'MSTRG.5655' => 'ama', 'MSTRG.9992' => 'ama', 'Nitab4.5_0000043g0310' => 'nta', 'Nitab4.5_0000463g0080' => 'nta', 'Nitab4.5_0000705g0170' => 'nta', 'Nitab4.5_0001326g0060' => 'nta', 'Nitab4.5_0001628g0030' => 'nta', 'Nitab4.5_0002103g0110' => 'nta', 'Nitab4.5_0002946g0030' => 'nta', 'Nitab4.5_0004639g0030' => 'nta', 'Nn2g11149' => 'nnu', 'Nn2g13389' => 'nnu', 'Nn4g25326' => 'nnu', 'Nn4g26290' => 'nnu', 'Nn5g29865' => 'nnu', 'Oeu004163.1' => 'oeu', 'Oeu006901.1' => 'oeu', 'Oeu010096.1' => 'oeu', 'Oeu024340.1' => 'oeu', 'Oeu048369.1' => 'oeu', 'Os01g0973000' => 'osa', 'Os03g0273800' => 'osa', 'Os03g0701200' => 'osa', 'Os03g0834050' => 'osa', 'Os07g0634400' => 'osa', 'Peaxi162Scf00092g01414' => 'pax', 'Peaxi162Scf00165g00818' => 'pax', 'Peaxi162Scf00309g00516' => 'pax', 'Peaxi162Scf00774g00218' => 'pax', 'PGR004G1824' => 'pgr', 'PGR004G2606' => 'pgr', 'PGR031G2716' => 'pgr', 'PGR102G2460' => 'pgr', 'PGR142G2599' => 'pgr', 'PGSC0003DMG400000843' => 'stu', 'PGSC0003DMG400008829' => 'stu', 'PGSC0003DMG400030418' => 'stu', 'PGSC0003DMG400031834' => 'stu', 'PGSC0003DMG401028300' => 'stu', 'PGSC0003DMG402028300' => 'stu', 'Phvul.001G219300' => 'pvu', 'Phvul.007G056000' => 'pvu', 'Phvul.007G208000' => 'pvu', 'Phvul.008G119500' => 'pvu', 'Phvul.010G011200' => 'pvu', 'Phvul.010G014800' => 'pvu', 'Phvul.011G062900' => 'pvu', 'Phvul.L007043' => 'pvu', 'Potri.001G242300' => 'ptr', 'Potri.002G185300' => 'ptr', 'Potri.006G086900' => 'ptr', 'Potri.008G151700' => 'ptr', 'Potri.009G033500' => 'ptr', 'Potri.010G089300' => 'ptr', 'Potri.014G110800' => 'ptr', 'Pp3c27_8130' => 'ppa', 'Pp3c6_27410' => 'ppa', 'PRCOL_00001659' => 'pco', 'PRCOL_00001927' => 'pco', 'PRCOL_00003649' => 'pco', 'Prupe.1G011600' => 'ppe', 'Prupe.3G000800' => 'ppe', 'Prupe.3G001100' => 'ppe', 'Prupe.6G072700' => 'ppe', 'Prupe.6G072800' => 'ppe', 'Prupe.6G257300' => 'ppe', 'Prupe.8G033000' => 'ppe', 'Psat0s2633g0080' => 'psa', 'Psat0s3396g0080' => 'psa', 'Psat0s3396g0200' => 'psa', 'Psat3g139080' => 'psa', 'Psat5g285080' => 'psa', 'Psat6g157760' => 'psa', 'Psat6g208440' => 'psa', 'Psat7g215320' => 'psa', 'Psat7g215400' => 'psa', 'Psat7g235600' => 'psa', 'Psat7g235760' => 'psa', 'PSO063G4603' => 'pso', 'PSO210G0182' => 'pso', 'PSO210G0196' => 'pso', 'PSO339G0394' => 'pso', 'PSO339G4127' => 'pso', 'PSO513G0064' => 'pso', 'PSO761G0079' => 'pso', 'QL01p031003' => 'qlo', 'QL01p031078' => 'qlo', 'QL06p003004' => 'qlo', 'QL07p048731' => 'qlo', 'QL09p037427' => 'qlo', 'RcHm_v2.0_Chr3g0466361' => 'rch', 'RcHm_v2.0_Chr3g0485571' => 'rch', 'RcHm_v2.0_Chr4g0416551' => 'rch', 'RcHm_v2.0_Chr5g0065831' => 'rch', 'Rhsim01G0230500' => 'rsi', 'Rhsim05G0194000' => 'rsi', 'Rhsim08G0250400' => 'rsi', 'Sabra02G0131000' => 'sbr', 'Sabra06G0066300' => 'sbr', 'Sabra08G0115500' => 'sbr', 'Sabra09G0023900' => 'sbr', 'Sabra10G0054000' => 'sbr', 'Sabra14G0081500' => 'sbr', 'Sabra16G0147100' => 'sbr', 'SalBow2G2957' => 'sbo', 'SalBow4G3320' => 'sbo', 'SalBow8G1894' => 'sbo', 'Sc07g0007950' => 'sci', 'Sc12g0001360' => 'sci', 'Sc13g0004330' => 'sci', 'Sc20g0005010' => 'sci', 'Sed0000361' => 'sed', 'Sed0001706' => 'sed', 'Sed0002422' => 'sed', 'Sed0004029' => 'sed', 'Sed0004602' => 'sed', 'Sed0004943' => 'sed', 'Sed0008646' => 'sed', 'Sed0023313' => 'sed', 'Sed0024843' => 'sed', 'SEGI_00081' => 'sgi', 'SEGI_00947' => 'sgi', 'SEGI_04046' => 'sgi', 'SEGI_06880' => 'sgi', 'SEGI_09736' => 'sgi', 'SEGI_12741' => 'sgi', 'SEGI_14530' => 'sgi', 'SEGI_20705' => 'sgi', 'SEGI_26088' => 'sgi', 'SEGI_28323' => 'sgi', 'SEGI_33343' => 'sgi', 'SGA_v2.0_scaffold126G33775' => 'sas', 'SGA_v2.0_scaffold2G01337' => 'sas', 'SGA_v2.0_scaffold38G15006' => 'sas', 'SGA_v2.0_scaffold39G15264' => 'sas', 'SGA_v2.0_scaffold453G51880' => 'sas', 'SHI12696' => 'shi', 'SMO367G1096' => 'smo', 'Solyc01g068630.3' => 'sly', 'Solyc05g011880.3' => 'sly', 'Solyc06g076300.3' => 'sly', 'Solyc09g010940.4' => 'sly', 'Solyc09g075890.3' => 'sly', 'Sopen01g030560' => 'spe', 'Sopen05g006630' => 'spe', 'Sopen06g032720' => 'spe', 'Sopen09g005660' => 'spe', 'Sopen09g030690' => 'spe', 'Sp4g14540' => 'spa', 'Sp4g20030' => 'spa', 'Sp5g01320' => 'spa', 'Sp6g21170' => 'spa', 'Sp6g21180' => 'spa', 'Sp6g21190' => 'spa', 'Sp6g40220' => 'spa', 'TAR362G0122' => 'tar', 'TAR362G1338' => 'tar', 'TAR369G0590' => 'tar', 'TAR371G0824' => 'tar', 'TAR622G1429' => 'tar', 'TAR623G0734' => 'tar', 'TAR625G0441' => 'tar', 'TAR629G0976' => 'tar', 'TAR633G1195' => 'tar', 'TAR636G2660' => 'tar', 'THA.LOC104799440' => 'tha', 'THA.LOC104800966' => 'tha', 'THA.LOC104806559' => 'tha', 'THA.LOC104810765' => 'tha', 'THA.LOC104816266' => 'tha', 'THA.LOC104817419' => 'tha', 'THA.LOC104827021' => 'tha', 'Thecc.01G327400' => 'tca', 'Thecc.04G229200' => 'tca', 'Thecc.05G037400' => 'tca', 'Thecc.09G318600' => 'tca', 'Thecc.09G318700' => 'tca', 'Thhalv10006238m.g' => 'esa', 'Thhalv10014321m.g' => 'esa', 'Thhalv10014335m.g' => 'esa', 'Thhalv10015826m.g' => 'esa', 'Thhalv10017107m.g' => 'esa', 'Thhalv10017180m.g' => 'esa', 'Thhalv10029339m.g' => 'esa', 'TPR.G1699' => 'tpr', 'TPR.G23609' => 'tpr', 'TPR.G3081' => 'tpr', 'TPR.G40397' => 'tpr', 'TPR.G5522' => 'tpr', 'TPR.G5618' => 'tpr', 'TPR.G5626' => 'tpr', 'TWI09G1632' => 'twi', 'TWI23G1230' => 'twi', 'TWI53G1064' => 'twi', 'TWI59G0751' => 'twi', 'TWI74G0947' => 'twi', 'TWI77G0337' => 'twi', 'TWI79G1254' => 'twi', 'unitig_0.g2341' => 'ugi', 'unitig_26.g10006' => 'ugi', 'unitig_26.g10008' => 'ugi', 'unitig_26.g9192' => 'ugi', 'vmacro14547' => 'vma', 'vmacro15333' => 'vma', 'vmacro18743' => 'vma', 'vmacro20166' => 'vma', 'VMungo0331G0523' => 'vmu', 'VMungo0331G1202' => 'vmu', 'VMungo0720G1228' => 'vmu', 'VMungo0720G1514' => 'vmu', 'VMungo1080G0169' => 'vmu', 'VMungo1127G1475' => 'vmu', 'VMungo1383G1208' => 'vmu', 'VMungo1383G1698' => 'vmu', 'Zm00001eb012270' => 'zma', 'Zm00001eb054100' => 'zma', 'Zm00001eb063350' => 'zma', 'Zm00001eb328560' => 'zma', 'Zm00001eb342820' => 'zma', 'Zm00001eb362210' => 'zma', 'Zm00001eb397730' => 'zma', 'Zm00001eb399750' => 'zma' ), 'gf_id' => 'HOM05D000959', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000959' ), 'data_identifier' => 'HOM05D000959', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000959', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '622', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p07100' => 'bna', 'A03p11720' => 'bna', 'A05p08300' => 'bna', 'A05p13380' => 'bna', 'A09p54130' => 'bna', 'A10p16690' => 'bna', 'A10p16700' => 'bna', 'A10p33390' => 'bna', 'Aa31LG10G16020' => 'aar', 'Aa31LG1G11810' => 'aar', 'Aa31LG1G11830' => 'aar', 'Aa31LG1G22510' => 'aar', 'Aa31LG5G4890' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5793' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2310' => 'aag', 'Actinidia08499' => 'ach', 'Actinidia11262' => 'ach', 'Actinidia23926' => 'ach', 'Actinidia34420' => 'ach', 'Actinidia36970' => 'ach', 'Ah.02g111220' => 'amhyb', 'Ah.15g097750' => 'amhyb', 'AL4G27500' => 'aly', 'AL6G11470' => 'aly', 'AL8G35950' => 'aly', 'AL8G35960' => 'aly', 'AL8G35970' => 'aly', 'Aqoxy1G00912' => 'aox', 'Aqoxy2G02253' => 'aox', 'Aqoxy2G02411' => 'aox', 'Aqoxy5G00485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BZ66YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K8ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM4FUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6BF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HFV7XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25JBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0YNNV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MAKK6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P70IT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP2Z6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V61LZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YWP64R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3S9AI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7PGHH' => 'arhy', 'AT2G32150' => 'ath', 'AT3G62040' => 'ath', 'AT5G02230' => 'ath', 'AT5G59480' => 'ath', 'AT5G59490' => 'ath', 'ATR0332G060' => 'atr', 'ATR0559G190' => 'atr', 'ATR0693G294' => 'atr', 'Atru.chr3.3975' => 'acertr', 'Atru.chr3.3976' => 'acertr', 'Atru.chr3.3977' => 'acertr', 'Atru.chr4.2498' => 'acertr', 'Atru.chr5.838' => 'acertr', 'Atru.chr8.1990' => 'acertr', 'Atru.chr8.1991' => 'acertr', 'Atru.chr8.1992' => 'acertr', 'AUR62001759' => 'cqu', 'AUR62009545' => 'cqu', 'AUR62010474' => 'cqu', 'AUR62025820' => 'cqu', 'AUR62030422' => 'cqu', 'AUR62033605' => 'cqu', 'AUR62038615' => 'cqu', 'AUR62041347' => 'cqu', 'BcaB01g04574' => 'bca', 'BcaB02g09263' => 'bca', 'BcaB02g10453' => 'bca', 'BcaB05g22513' => 'bca', 'BcaB08g36253' => 'bca', 'BcaB08g36254' => 'bca', 'BcaC01g06519' => 'bca', 'BcaC02g11889' => 'bca', 'BcaC03g14010' => 'bca', 'BcaC03g18439' => 'bca', 'BcaC04g19765' => 'bca', 'BcaC09g48432' => 'bca', 'BcaNung07302' => 'bca', 'BolC2t06040H' => 'bol', 'BolC2t07346H' => 'bol', 'BolC3t13817H' => 'bol', 'BolC4t22625H' => 'bol', 'BolC4t23297H' => 'bol', 'BolC8t51278H' => 'bol', 'BolC9t58050H' => 'bol', 'BolC9t58051H' => 'bol', 'BolC9t60163H' => 'bol', 'BraA02t04712Z' => 'bra', 'BraA02t05791Z' => 'bra', 'BraA03t10483Z' => 'bra', 'BraA05t19795Z' => 'bra', 'BraA05t20276Z' => 'bra', 'BraA09t40827Z' => 'bra', 'BraA10t43750Z' => 'bra', 'BraA10t43751Z' => 'bra', 'BraA10t45370Z' => 'bra', 'C02p00400' => 'bna', 'C02p12460' => 'bna', 'C03p13680' => 'bna', 'C04p10270' => 'bna', 'C04p17500' => 'bna', 'C08p37010' => 'bna', 'C09p51880' => 'bna', 'C09p51890' => 'bna', 'C09p74300' => 'bna', 'CAN.G179.26' => 'can', 'CAN.G3384.1' => 'can', 'CAN.G394.68' => 'can', 'CAN.G907.13' => 'can', 'CANSAT11G0012' => 'cansat', 'CANSAT25G1586' => 'cansat', 'CANSAT35G0735' => 'cansat', 'CANSAT54G0556' => 'cansat', 'CANSAT64G0356' => 'cansat', 'CANSAT78G2042' => 'cansat', 'CARHR125920' => 'chi', 'CARHR131910' => 'chi', 'CARHR172390' => 'chi', 'CARHR211140' => 'chi', 'CARHR285850' => 'chi', 'CARHR285860' => 'chi', 'Carub.0004s1347' => 'cru', 'Carub.0004s1960' => 'cru', 'Carub.0005s2880' => 'cru', 'Carub.0006s0107' => 'cru', 'Carub.0008s2015' => 'cru', 'Carub.0008s2016' => 'cru', 'Carub.0008s2017' => 'cru', 'Ca_01315_v3' => 'car', 'Ca_05063_v3' => 'car', 'Ca_10231_v3' => 'car', 'Ca_10913_v3' => 'car', 'Ca_19156_v3' => 'car', 'Ca_23644_v3' => 'car', 'Ca_26735_v3' => 'car', 'Cc01_g13130' => 'ccan', 'Cc02_g21690' => 'ccan', 'Cc03_g03600' => 'ccan', 'Cc06_g02510' => 'ccan', 'CDE02G1265' => 'cde', 'CDE05G0415' => 'cde', 'CDE08G1082' => 'cde', 'Cfa005780' => 'cfa', 'Cfa011522' => 'cfa', 'Cfa011523' => 'cfa', 'Cfa015627' => 'cfa', 'Cfa017359' => 'cfa', 'Ciclev10005687m.g' => 'ccl', 'Ciclev10012173m.g' => 'ccl', 'Ciclev10021621m.g' => 'ccl', 'Ciclev10028968m.g' => 'ccl', 'Ciclev10029907m.g' => 'ccl', 'CiPaw.01G164800' => 'cil', 'CiPaw.07G083700' => 'cil', 'CiPaw.07G127000' => 'cil', 'CiPaw.07G136900' => 'cil', 'CiPaw.08G081700' => 'cil', 'CiPaw.09G194600' => 'cil', 'CiPaw.10G146500' => 'cil', 'CiPaw.13G091500' => 'cil', 'CiPaw.13G091600' => 'cil', 'ClCG00G003390' => 'cla', 'ClCG01G007220' => 'cla', 'ClCG03G001370' => 'cla', 'ClCG04G008100' => 'cla', 'ClCG06G006110' => 'cla', 'ClCG06G006130' => 'cla', 'ClCG10G021210' => 'cla', 'COL.COLO4_07648' => 'col', 'COL.COLO4_07650' => 'col', 'COL.COLO4_07651' => 'col', 'COL.COLO4_14780' => 'col', 'COL.COLO4_18546' => 'col', 'COL.COLO4_18547' => 'col', 'COL.COLO4_23103' => 'col', 'COL.COLO4_30419' => 'col', 'COL.COLO4_34232' => 'col', 'Cpa.g.sc169.20' => 'cpa', 'Cpa.g.sc57.45' => 'cpa', 'Cpa.g.sc58.124' => 'cpa', 'Cpa.g.sc58.125' => 'cpa', 'Cpa.g.sc81.118' => 'cpa', 'Cpa.g.sc81.119' => 'cpa', 'Cre12.g524700' => 'cre', 'CsaV3_1G034430' => 'csa', 'CsaV3_1G034440' => 'csa', 'CsaV3_1G034450' => 'csa', 'CsaV3_3G034830' => 'csa', 'CsaV3_4G025090' => 'csa', 'CsaV3_5G018660' => 'csa', 'CsaV3_6G038160' => 'csa', 'CSS0003447' => 'camsi', 'CSS0017840' => 'camsi', 'CSS0019260' => 'camsi', 'CSS0040375' => 'camsi', 'CSS0042533' => 'camsi', 'DCAR_005960' => 'dca', 'DCAR_012104' => 'dca', 'DCAR_012105' => 'dca', 'DCAR_012293' => 'dca', 'DCAR_015632' => 'dca', 'DCAR_024602' => 'dca', 'DCAR_028752' => 'dca', 'Dinv06261' => 'din', 'Dinv13982' => 'din', 'Dinv17029' => 'din', 'Dinv18463' => 'din', 'Dinv33181' => 'din', 'Dinv35585' => 'din', 'Dinv37161' => 'din', 'Dinv42977' => 'din', 'Dinv43122' => 'din', 'Dinv44517' => 'din', 'Duzib093G0256' => 'dzi', 'Duzib106G1254' => 'dzi', 'Duzib128G1789' => 'dzi', 'Duzib133G0633' => 'dzi', 'Duzib138G0510' => 'dzi', 'Duzib150G1084' => 'dzi', 'Duzib168G0488' => 'dzi', 'Duzib168G1523' => 'dzi', 'Duzib170G0133' => 'dzi', 'ECA234G1433' => 'eca', 'ECA236G1432' => 'eca', 'ECA236G2256' => 'eca', 'ECA236G2365' => 'eca', 'ECA236G4830' => 'eca', 'ECA248G1505' => 'eca', 'EL10Ac3g06431' => 'bvu', 'EL10Ac5g12577' => 'bvu', 'EL10Ac6g13533' => 'bvu', 'EL10Ac7g16045' => 'bvu', 'Eucgr.A01281' => 'egr', 'Eucgr.B02326' => 'egr', 'Eucgr.H03532' => 'egr', 'Eucgr.K00553' => 'egr', 'Eucgr.K03116' => 'egr', 'FAN02G3963' => 'fan', 'FAN05G0438' => 'fan', 'FAN09G2434' => 'fan', 'FAN12G3984' => 'fan', 'FAN14G0798' => 'fan', 'FAN17G0652' => 'fan', 'FAN19G1988' => 'fan', 'FAN22G0632' => 'fan', 'FAN23G0387' => 'fan', 'FAN26G1323' => 'fan', 'FAN28G0666' => 'fan', 'FvH4_1g26080' => 'fve', 'FvH4_3g36780' => 'fve', 'FvH4_4g15270' => 'fve', 'FvH4_6g13490' => 'fve', 'Glyma.01G098700' => 'gma', 'Glyma.03G065900' => 'gma', 'Glyma.03G073754' => 'gma', 'Glyma.03G073758' => 'gma', 'Glyma.03G083200' => 'gma', 'Glyma.03G225500' => 'gma', 'Glyma.05G037766' => 'gma', 'Glyma.07G133500' => 'gma', 'Glyma.10G139400' => 'gma', 'Glyma.10G248900' => 'gma', 'Glyma.11G137800' => 'gma', 'Glyma.12G061300' => 'gma', 'Glyma.13G337900' => 'gma', 'Glyma.15G036600' => 'gma', 'Glyma.18G182800' => 'gma', 'Glyma.19G222500' => 'gma', 'Glyma.20G144800' => 'gma', 'Gohir.A01G222000' => 'ghi', 'Gohir.A03G044000' => 'ghi', 'Gohir.A03G044100' => 'ghi', 'Gohir.A04G083100' => 'ghi', 'Gohir.A07G127200' => 'ghi', 'Gohir.A07G132400' => 'ghi', 'Gohir.A08G000700' => 'ghi', 'Gohir.A11G327300' => 'ghi', 'Gohir.D01G211500' => 'ghi', 'Gohir.D03G123400' => 'ghi', 'Gohir.D03G123500' => 'ghi', 'Gohir.D04G121800' => 'ghi', 'Gohir.D07G131500' => 'ghi', 'Gohir.D07G136600' => 'ghi', 'Gohir.D08G011600' => 'ghi', 'Gohir.D11G346200' => 'ghi', 'Gorai.001G142800' => 'gra', 'Gorai.001G148700' => 'gra', 'Gorai.002G257300' => 'gra', 'Gorai.003G130000' => 'gra', 'Gorai.003G130100' => 'gra', 'Gorai.004G005300' => 'gra', 'Gorai.007G376500' => 'gra', 'Gorai.012G104700' => 'gra', 'GSVIVG01017946001' => 'vvi', 'GSVIVG01024928001' => 'vvi', 'GSVIVG01028227001' => 'vvi', 'GSVIVG01034151001' => 'vvi', 'HanXRQChr05g0135031' => 'han', 'HanXRQChr05g0135041' => 'han', 'HanXRQChr05g0140021' => 'han', 'HanXRQChr06g0178981' => 'han', 'HanXRQChr07g0188251' => 'han', 'HanXRQChr08g0235311' => 'han', 'HanXRQChr09g0271011' => 'han', 'HanXRQChr10g0293321' => 'han', 'HanXRQChr13g0388171' => 'han', 'Haze_00916' => 'cav', 'Haze_05063' => 'cav', 'Haze_20814' => 'cav', 'Haze_24128' => 'cav', 'Hma1.2p1_0745F.1_g212010' => 'hma', 'Hma1.2p1_0757F.1_g213260' => 'hma', 'Hma1.2p1_0936F.1_g238840' => 'hma', 'Hma1.2p1_1735F.1_g299890' => 'hma', 'Hma1.2p1_1861F.1_g305685' => 'hma', 'HPP92_003397' => 'vpl', 'HPP92_012597' => 'vpl', 'HPP92_015520' => 'vpl', 'HPP92_015539' => 'vpl', 'HPP92_020373' => 'vpl', 'Hund04938' => 'sun', 'Hund10677' => 'sun', 'Hund11033' => 'sun', 'Hund12155' => 'sun', 'Lalb_Chr01g0022551' => 'lal', 'Lalb_Chr03g0042341' => 'lal', 'Lalb_Chr07g0192931' => 'lal', 'Lalb_Chr12g0209551' => 'lal', 'Lalb_Chr19g0125251' => 'lal', 'Lalb_Chr19g0137891' => 'lal', 'Lalb_Chr21g0304641' => 'lal', 'Lalb_Chr21g0309881' => 'lal', 'Lj1A5T12' => 'lonja', 'Lj1C148G10' => 'lonja', 'Lj2A93T83' => 'lonja', 'Lj3A738G68' => 'lonja', 'Lj3C966T1' => 'lonja', 'Lj3g0018958' => 'lja', 'Lj3g0021831' => 'lja', 'Lj3g0025443' => 'lja', 'Lj4g0026809' => 'lja', 'Lj5g0012558' => 'lja', 'Lj5g0021586' => 'lja', 'Lsat_1_v5_gn_5_156840' => 'lsa', 'Lsat_1_v5_gn_8_73460' => 'lsa', 'Lsat_1_v5_gn_8_73481' => 'lsa', 'Lsat_1_v5_gn_9_31601' => 'lsa', 'Lsat_1_v5_gn_9_77320' => 'lsa', 'Manes.01G171300' => 'mes', 'Manes.01G171400' => 'mes', 'Manes.01G236100' => 'mes', 'Manes.02G130500' => 'mes', 'Manes.02G130600' => 'mes', 'Manes.03G180200' => 'mes', 'Manes.05G007000' => 'mes', 'Manes.08G084400' => 'mes', 'Manes.09G092600' => 'mes', 'Manes.15G027900' => 'mes', 'MBI04_g40948_MAGBIO' => 'mbi', 'MBI14_g12123_MAGBIO' => 'mbi', 'MBI18_g28915_MAGBIO' => 'mbi', 'MCO09G053' => 'mco', 'MCO11G782' => 'mco', 'MCO15G215' => 'mco', 'MD03G1088500' => 'mdo', 'MD03G1088600' => 'mdo', 'MD04G1130800' => 'mdo', 'MD09G1291700' => 'mdo', 'MD11G1097500' => 'mdo', 'MD11G1097600' => 'mdo', 'MD12G1143900' => 'mdo', 'MD13G1191400' => 'mdo', 'MD16G1191500' => 'mdo', 'Medtr1g085570' => 'mtr', 'Medtr1g104610' => 'mtr', 'Medtr2g097520' => 'mtr', 'Medtr4g021800' => 'mtr', 'Medtr4g021825' => 'mtr', 'Medtr4g064270' => 'mtr', 'Medtr4g064380' => 'mtr', 'Medtr7g062150' => 'mtr', 'MELO3C003138.2' => 'cme', 'MELO3C005187.2' => 'cme', 'MELO3C009252.2' => 'cme', 'MELO3C014481.2' => 'cme', 'MELO3C020616.2' => 'cme', 'MELO3C020617.2' => 'cme', 'MELO3C020618.2' => 'cme', 'Migut.G00328' => 'egut', 'Migut.J00320' => 'egut', 'Migut.L01000' => 'egut', 'Migut.L01953' => 'egut', 'MSTRG.10253' => 'ama', 'MSTRG.19077' => 'ama', 'MSTRG.26780' => 'ama', 'MSTRG.4023' => 'ama', 'MSTRG.5655' => 'ama', 'MSTRG.9992' => 'ama', 'Nitab4.5_0000043g0310' => 'nta', 'Nitab4.5_0000463g0080' => 'nta', 'Nitab4.5_0000705g0170' => 'nta', 'Nitab4.5_0001326g0060' => 'nta', 'Nitab4.5_0001628g0030' => 'nta', 'Nitab4.5_0002103g0110' => 'nta', 'Nitab4.5_0002946g0030' => 'nta', 'Nitab4.5_0004639g0030' => 'nta', 'Nn2g11149' => 'nnu', 'Nn2g13389' => 'nnu', 'Nn4g25326' => 'nnu', 'Nn4g26290' => 'nnu', 'Nn5g29865' => 'nnu', 'Oeu004163.1' => 'oeu', 'Oeu006901.1' => 'oeu', 'Oeu010096.1' => 'oeu', 'Oeu024340.1' => 'oeu', 'Oeu048369.1' => 'oeu', 'Os01g0973000' => 'osa', 'Os03g0273800' => 'osa', 'Os03g0701200' => 'osa', 'Os03g0834050' => 'osa', 'Os07g0634400' => 'osa', 'Peaxi162Scf00092g01414' => 'pax', 'Peaxi162Scf00165g00818' => 'pax', 'Peaxi162Scf00309g00516' => 'pax', 'Peaxi162Scf00774g00218' => 'pax', 'PGR004G1824' => 'pgr', 'PGR004G2606' => 'pgr', 'PGR031G2716' => 'pgr', 'PGR102G2460' => 'pgr', 'PGR142G2599' => 'pgr', 'PGSC0003DMG400000843' => 'stu', 'PGSC0003DMG400008829' => 'stu', 'PGSC0003DMG400030418' => 'stu', 'PGSC0003DMG400031834' => 'stu', 'PGSC0003DMG401028300' => 'stu', 'PGSC0003DMG402028300' => 'stu', 'Phvul.001G219300' => 'pvu', 'Phvul.007G056000' => 'pvu', 'Phvul.007G208000' => 'pvu', 'Phvul.008G119500' => 'pvu', 'Phvul.010G011200' => 'pvu', 'Phvul.010G014800' => 'pvu', 'Phvul.011G062900' => 'pvu', 'Phvul.L007043' => 'pvu', 'Potri.001G242300' => 'ptr', 'Potri.002G185300' => 'ptr', 'Potri.006G086900' => 'ptr', 'Potri.008G151700' => 'ptr', 'Potri.009G033500' => 'ptr', 'Potri.010G089300' => 'ptr', 'Potri.014G110800' => 'ptr', 'Pp3c27_8130' => 'ppa', 'Pp3c6_27410' => 'ppa', 'PRCOL_00001659' => 'pco', 'PRCOL_00001927' => 'pco', 'PRCOL_00003649' => 'pco', 'Prupe.1G011600' => 'ppe', 'Prupe.3G000800' => 'ppe', 'Prupe.3G001100' => 'ppe', 'Prupe.6G072700' => 'ppe', 'Prupe.6G072800' => 'ppe', 'Prupe.6G257300' => 'ppe', 'Prupe.8G033000' => 'ppe', 'Psat0s2633g0080' => 'psa', 'Psat0s3396g0080' => 'psa', 'Psat0s3396g0200' => 'psa', 'Psat3g139080' => 'psa', 'Psat5g285080' => 'psa', 'Psat6g157760' => 'psa', 'Psat6g208440' => 'psa', 'Psat7g215320' => 'psa', 'Psat7g215400' => 'psa', 'Psat7g235600' => 'psa', 'Psat7g235760' => 'psa', 'PSO063G4603' => 'pso', 'PSO210G0182' => 'pso', 'PSO210G0196' => 'pso', 'PSO339G0394' => 'pso', 'PSO339G4127' => 'pso', 'PSO513G0064' => 'pso', 'PSO761G0079' => 'pso', 'QL01p031003' => 'qlo', 'QL01p031078' => 'qlo', 'QL06p003004' => 'qlo', 'QL07p048731' => 'qlo', 'QL09p037427' => 'qlo', 'RcHm_v2.0_Chr3g0466361' => 'rch', 'RcHm_v2.0_Chr3g0485571' => 'rch', 'RcHm_v2.0_Chr4g0416551' => 'rch', 'RcHm_v2.0_Chr5g0065831' => 'rch', 'Rhsim01G0230500' => 'rsi', 'Rhsim05G0194000' => 'rsi', 'Rhsim08G0250400' => 'rsi', 'Sabra02G0131000' => 'sbr', 'Sabra06G0066300' => 'sbr', 'Sabra08G0115500' => 'sbr', 'Sabra09G0023900' => 'sbr', 'Sabra10G0054000' => 'sbr', 'Sabra14G0081500' => 'sbr', 'Sabra16G0147100' => 'sbr', 'SalBow2G2957' => 'sbo', 'SalBow4G3320' => 'sbo', 'SalBow8G1894' => 'sbo', 'Sc07g0007950' => 'sci', 'Sc12g0001360' => 'sci', 'Sc13g0004330' => 'sci', 'Sc20g0005010' => 'sci', 'Sed0000361' => 'sed', 'Sed0001706' => 'sed', 'Sed0002422' => 'sed', 'Sed0004029' => 'sed', 'Sed0004602' => 'sed', 'Sed0004943' => 'sed', 'Sed0008646' => 'sed', 'Sed0023313' => 'sed', 'Sed0024843' => 'sed', 'SEGI_00081' => 'sgi', 'SEGI_00947' => 'sgi', 'SEGI_04046' => 'sgi', 'SEGI_06880' => 'sgi', 'SEGI_09736' => 'sgi', 'SEGI_12741' => 'sgi', 'SEGI_14530' => 'sgi', 'SEGI_20705' => 'sgi', 'SEGI_26088' => 'sgi', 'SEGI_28323' => 'sgi', 'SEGI_33343' => 'sgi', 'SGA_v2.0_scaffold126G33775' => 'sas', 'SGA_v2.0_scaffold2G01337' => 'sas', 'SGA_v2.0_scaffold38G15006' => 'sas', 'SGA_v2.0_scaffold39G15264' => 'sas', 'SGA_v2.0_scaffold453G51880' => 'sas', 'SHI12696' => 'shi', 'SMO367G1096' => 'smo', 'Solyc01g068630.3' => 'sly', 'Solyc05g011880.3' => 'sly', 'Solyc06g076300.3' => 'sly', 'Solyc09g010940.4' => 'sly', 'Solyc09g075890.3' => 'sly', 'Sopen01g030560' => 'spe', 'Sopen05g006630' => 'spe', 'Sopen06g032720' => 'spe', 'Sopen09g005660' => 'spe', 'Sopen09g030690' => 'spe', 'Sp4g14540' => 'spa', 'Sp4g20030' => 'spa', 'Sp5g01320' => 'spa', 'Sp6g21170' => 'spa', 'Sp6g21180' => 'spa', 'Sp6g21190' => 'spa', 'Sp6g40220' => 'spa', 'TAR362G0122' => 'tar', 'TAR362G1338' => 'tar', 'TAR369G0590' => 'tar', 'TAR371G0824' => 'tar', 'TAR622G1429' => 'tar', 'TAR623G0734' => 'tar', 'TAR625G0441' => 'tar', 'TAR629G0976' => 'tar', 'TAR633G1195' => 'tar', 'TAR636G2660' => 'tar', 'THA.LOC104799440' => 'tha', 'THA.LOC104800966' => 'tha', 'THA.LOC104806559' => 'tha', 'THA.LOC104810765' => 'tha', 'THA.LOC104816266' => 'tha', 'THA.LOC104817419' => 'tha', 'THA.LOC104827021' => 'tha', 'Thecc.01G327400' => 'tca', 'Thecc.04G229200' => 'tca', 'Thecc.05G037400' => 'tca', 'Thecc.09G318600' => 'tca', 'Thecc.09G318700' => 'tca', 'Thhalv10006238m.g' => 'esa', 'Thhalv10014321m.g' => 'esa', 'Thhalv10014335m.g' => 'esa', 'Thhalv10015826m.g' => 'esa', 'Thhalv10017107m.g' => 'esa', 'Thhalv10017180m.g' => 'esa', 'Thhalv10029339m.g' => 'esa', 'TPR.G1699' => 'tpr', 'TPR.G23609' => 'tpr', 'TPR.G3081' => 'tpr', 'TPR.G40397' => 'tpr', 'TPR.G5522' => 'tpr', 'TPR.G5618' => 'tpr', 'TPR.G5626' => 'tpr', 'TWI09G1632' => 'twi', 'TWI23G1230' => 'twi', 'TWI53G1064' => 'twi', 'TWI59G0751' => 'twi', 'TWI74G0947' => 'twi', 'TWI77G0337' => 'twi', 'TWI79G1254' => 'twi', 'unitig_0.g2341' => 'ugi', 'unitig_26.g10006' => 'ugi', 'unitig_26.g10008' => 'ugi', 'unitig_26.g9192' => 'ugi', 'vmacro14547' => 'vma', 'vmacro15333' => 'vma', 'vmacro18743' => 'vma', 'vmacro20166' => 'vma', 'VMungo0331G0523' => 'vmu', 'VMungo0331G1202' => 'vmu', 'VMungo0720G1228' => 'vmu', 'VMungo0720G1514' => 'vmu', 'VMungo1080G0169' => 'vmu', 'VMungo1127G1475' => 'vmu', 'VMungo1383G1208' => 'vmu', 'VMungo1383G1698' => 'vmu', 'Zm00001eb012270' => 'zma', 'Zm00001eb054100' => 'zma', 'Zm00001eb063350' => 'zma', 'Zm00001eb328560' => 'zma', 'Zm00001eb342820' => 'zma', 'Zm00001eb362210' => 'zma', 'Zm00001eb397730' => 'zma', 'Zm00001eb399750' => 'zma' ) $gf_id = 'HOM05D000959' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000959' ) $data_identifier = 'HOM05D000959' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 5, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 5, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 10, 'mbi' => (int) 3, 'mco' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 2, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 3, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 11, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399750' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000959', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '622', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p07100' => 'bna', 'A03p11720' => 'bna', 'A05p08300' => 'bna', 'A05p13380' => 'bna', 'A09p54130' => 'bna', 'A10p16690' => 'bna', 'A10p16700' => 'bna', 'A10p33390' => 'bna', 'Aa31LG10G16020' => 'aar', 'Aa31LG1G11810' => 'aar', 'Aa31LG1G11830' => 'aar', 'Aa31LG1G22510' => 'aar', 'Aa31LG5G4890' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5793' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2310' => 'aag', 'Actinidia08499' => 'ach', 'Actinidia11262' => 'ach', 'Actinidia23926' => 'ach', 'Actinidia34420' => 'ach', 'Actinidia36970' => 'ach', 'Ah.02g111220' => 'amhyb', 'Ah.15g097750' => 'amhyb', 'AL4G27500' => 'aly', 'AL6G11470' => 'aly', 'AL8G35950' => 'aly', 'AL8G35960' => 'aly', 'AL8G35970' => 'aly', 'Aqoxy1G00912' => 'aox', 'Aqoxy2G02253' => 'aox', 'Aqoxy2G02411' => 'aox', 'Aqoxy5G00485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BZ66YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K8ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM4FUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6BF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HFV7XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25JBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0YNNV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MAKK6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P70IT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP2Z6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V61LZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YWP64R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3S9AI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7PGHH' => 'arhy', 'AT2G32150' => 'ath', 'AT3G62040' => 'ath', 'AT5G02230' => 'ath', 'AT5G59480' => 'ath', 'AT5G59490' => 'ath', 'ATR0332G060' => 'atr', 'ATR0559G190' => 'atr', 'ATR0693G294' => 'atr', 'Atru.chr3.3975' => 'acertr', 'Atru.chr3.3976' => 'acertr', 'Atru.chr3.3977' => 'acertr', 'Atru.chr4.2498' => 'acertr', 'Atru.chr5.838' => 'acertr', 'Atru.chr8.1990' => 'acertr', 'Atru.chr8.1991' => 'acertr', 'Atru.chr8.1992' => 'acertr', 'AUR62001759' => 'cqu', 'AUR62009545' => 'cqu', 'AUR62010474' => 'cqu', 'AUR62025820' => 'cqu', 'AUR62030422' => 'cqu', 'AUR62033605' => 'cqu', 'AUR62038615' => 'cqu', 'AUR62041347' => 'cqu', 'BcaB01g04574' => 'bca', 'BcaB02g09263' => 'bca', 'BcaB02g10453' => 'bca', 'BcaB05g22513' => 'bca', 'BcaB08g36253' => 'bca', 'BcaB08g36254' => 'bca', 'BcaC01g06519' => 'bca', 'BcaC02g11889' => 'bca', 'BcaC03g14010' => 'bca', 'BcaC03g18439' => 'bca', 'BcaC04g19765' => 'bca', 'BcaC09g48432' => 'bca', 'BcaNung07302' => 'bca', 'BolC2t06040H' => 'bol', 'BolC2t07346H' => 'bol', 'BolC3t13817H' => 'bol', 'BolC4t22625H' => 'bol', 'BolC4t23297H' => 'bol', 'BolC8t51278H' => 'bol', 'BolC9t58050H' => 'bol', 'BolC9t58051H' => 'bol', 'BolC9t60163H' => 'bol', 'BraA02t04712Z' => 'bra', 'BraA02t05791Z' => 'bra', 'BraA03t10483Z' => 'bra', 'BraA05t19795Z' => 'bra', 'BraA05t20276Z' => 'bra', 'BraA09t40827Z' => 'bra', 'BraA10t43750Z' => 'bra', 'BraA10t43751Z' => 'bra', 'BraA10t45370Z' => 'bra', 'C02p00400' => 'bna', 'C02p12460' => 'bna', 'C03p13680' => 'bna', 'C04p10270' => 'bna', 'C04p17500' => 'bna', 'C08p37010' => 'bna', 'C09p51880' => 'bna', 'C09p51890' => 'bna', 'C09p74300' => 'bna', 'CAN.G179.26' => 'can', 'CAN.G3384.1' => 'can', 'CAN.G394.68' => 'can', 'CAN.G907.13' => 'can', 'CANSAT11G0012' => 'cansat', 'CANSAT25G1586' => 'cansat', 'CANSAT35G0735' => 'cansat', 'CANSAT54G0556' => 'cansat', 'CANSAT64G0356' => 'cansat', 'CANSAT78G2042' => 'cansat', 'CARHR125920' => 'chi', 'CARHR131910' => 'chi', 'CARHR172390' => 'chi', 'CARHR211140' => 'chi', 'CARHR285850' => 'chi', 'CARHR285860' => 'chi', 'Carub.0004s1347' => 'cru', 'Carub.0004s1960' => 'cru', 'Carub.0005s2880' => 'cru', 'Carub.0006s0107' => 'cru', 'Carub.0008s2015' => 'cru', 'Carub.0008s2016' => 'cru', 'Carub.0008s2017' => 'cru', 'Ca_01315_v3' => 'car', 'Ca_05063_v3' => 'car', 'Ca_10231_v3' => 'car', 'Ca_10913_v3' => 'car', 'Ca_19156_v3' => 'car', 'Ca_23644_v3' => 'car', 'Ca_26735_v3' => 'car', 'Cc01_g13130' => 'ccan', 'Cc02_g21690' => 'ccan', 'Cc03_g03600' => 'ccan', 'Cc06_g02510' => 'ccan', 'CDE02G1265' => 'cde', 'CDE05G0415' => 'cde', 'CDE08G1082' => 'cde', 'Cfa005780' => 'cfa', 'Cfa011522' => 'cfa', 'Cfa011523' => 'cfa', 'Cfa015627' => 'cfa', 'Cfa017359' => 'cfa', 'Ciclev10005687m.g' => 'ccl', 'Ciclev10012173m.g' => 'ccl', 'Ciclev10021621m.g' => 'ccl', 'Ciclev10028968m.g' => 'ccl', 'Ciclev10029907m.g' => 'ccl', 'CiPaw.01G164800' => 'cil', 'CiPaw.07G083700' => 'cil', 'CiPaw.07G127000' => 'cil', 'CiPaw.07G136900' => 'cil', 'CiPaw.08G081700' => 'cil', 'CiPaw.09G194600' => 'cil', 'CiPaw.10G146500' => 'cil', 'CiPaw.13G091500' => 'cil', 'CiPaw.13G091600' => 'cil', 'ClCG00G003390' => 'cla', 'ClCG01G007220' => 'cla', 'ClCG03G001370' => 'cla', 'ClCG04G008100' => 'cla', 'ClCG06G006110' => 'cla', 'ClCG06G006130' => 'cla', 'ClCG10G021210' => 'cla', 'COL.COLO4_07648' => 'col', 'COL.COLO4_07650' => 'col', 'COL.COLO4_07651' => 'col', 'COL.COLO4_14780' => 'col', 'COL.COLO4_18546' => 'col', 'COL.COLO4_18547' => 'col', 'COL.COLO4_23103' => 'col', 'COL.COLO4_30419' => 'col', 'COL.COLO4_34232' => 'col', 'Cpa.g.sc169.20' => 'cpa', 'Cpa.g.sc57.45' => 'cpa', 'Cpa.g.sc58.124' => 'cpa', 'Cpa.g.sc58.125' => 'cpa', 'Cpa.g.sc81.118' => 'cpa', 'Cpa.g.sc81.119' => 'cpa', 'Cre12.g524700' => 'cre', 'CsaV3_1G034430' => 'csa', 'CsaV3_1G034440' => 'csa', 'CsaV3_1G034450' => 'csa', 'CsaV3_3G034830' => 'csa', 'CsaV3_4G025090' => 'csa', 'CsaV3_5G018660' => 'csa', 'CsaV3_6G038160' => 'csa', 'CSS0003447' => 'camsi', 'CSS0017840' => 'camsi', 'CSS0019260' => 'camsi', 'CSS0040375' => 'camsi', 'CSS0042533' => 'camsi', 'DCAR_005960' => 'dca', 'DCAR_012104' => 'dca', 'DCAR_012105' => 'dca', 'DCAR_012293' => 'dca', 'DCAR_015632' => 'dca', 'DCAR_024602' => 'dca', 'DCAR_028752' => 'dca', 'Dinv06261' => 'din', 'Dinv13982' => 'din', 'Dinv17029' => 'din', 'Dinv18463' => 'din', 'Dinv33181' => 'din', 'Dinv35585' => 'din', 'Dinv37161' => 'din', 'Dinv42977' => 'din', 'Dinv43122' => 'din', 'Dinv44517' => 'din', 'Duzib093G0256' => 'dzi', 'Duzib106G1254' => 'dzi', 'Duzib128G1789' => 'dzi', 'Duzib133G0633' => 'dzi', 'Duzib138G0510' => 'dzi', 'Duzib150G1084' => 'dzi', 'Duzib168G0488' => 'dzi', 'Duzib168G1523' => 'dzi', 'Duzib170G0133' => 'dzi', 'ECA234G1433' => 'eca', 'ECA236G1432' => 'eca', 'ECA236G2256' => 'eca', 'ECA236G2365' => 'eca', 'ECA236G4830' => 'eca', 'ECA248G1505' => 'eca', 'EL10Ac3g06431' => 'bvu', 'EL10Ac5g12577' => 'bvu', 'EL10Ac6g13533' => 'bvu', 'EL10Ac7g16045' => 'bvu', 'Eucgr.A01281' => 'egr', 'Eucgr.B02326' => 'egr', 'Eucgr.H03532' => 'egr', 'Eucgr.K00553' => 'egr', 'Eucgr.K03116' => 'egr', 'FAN02G3963' => 'fan', 'FAN05G0438' => 'fan', 'FAN09G2434' => 'fan', 'FAN12G3984' => 'fan', 'FAN14G0798' => 'fan', 'FAN17G0652' => 'fan', 'FAN19G1988' => 'fan', 'FAN22G0632' => 'fan', 'FAN23G0387' => 'fan', 'FAN26G1323' => 'fan', 'FAN28G0666' => 'fan', 'FvH4_1g26080' => 'fve', 'FvH4_3g36780' => 'fve', 'FvH4_4g15270' => 'fve', 'FvH4_6g13490' => 'fve', 'Glyma.01G098700' => 'gma', 'Glyma.03G065900' => 'gma', 'Glyma.03G073754' => 'gma', 'Glyma.03G073758' => 'gma', 'Glyma.03G083200' => 'gma', 'Glyma.03G225500' => 'gma', 'Glyma.05G037766' => 'gma', 'Glyma.07G133500' => 'gma', 'Glyma.10G139400' => 'gma', 'Glyma.10G248900' => 'gma', 'Glyma.11G137800' => 'gma', 'Glyma.12G061300' => 'gma', 'Glyma.13G337900' => 'gma', 'Glyma.15G036600' => 'gma', 'Glyma.18G182800' => 'gma', 'Glyma.19G222500' => 'gma', 'Glyma.20G144800' => 'gma', 'Gohir.A01G222000' => 'ghi', 'Gohir.A03G044000' => 'ghi', 'Gohir.A03G044100' => 'ghi', 'Gohir.A04G083100' => 'ghi', 'Gohir.A07G127200' => 'ghi', 'Gohir.A07G132400' => 'ghi', 'Gohir.A08G000700' => 'ghi', 'Gohir.A11G327300' => 'ghi', 'Gohir.D01G211500' => 'ghi', 'Gohir.D03G123400' => 'ghi', 'Gohir.D03G123500' => 'ghi', 'Gohir.D04G121800' => 'ghi', 'Gohir.D07G131500' => 'ghi', 'Gohir.D07G136600' => 'ghi', 'Gohir.D08G011600' => 'ghi', 'Gohir.D11G346200' => 'ghi', 'Gorai.001G142800' => 'gra', 'Gorai.001G148700' => 'gra', 'Gorai.002G257300' => 'gra', 'Gorai.003G130000' => 'gra', 'Gorai.003G130100' => 'gra', 'Gorai.004G005300' => 'gra', 'Gorai.007G376500' => 'gra', 'Gorai.012G104700' => 'gra', 'GSVIVG01017946001' => 'vvi', 'GSVIVG01024928001' => 'vvi', 'GSVIVG01028227001' => 'vvi', 'GSVIVG01034151001' => 'vvi', 'HanXRQChr05g0135031' => 'han', 'HanXRQChr05g0135041' => 'han', 'HanXRQChr05g0140021' => 'han', 'HanXRQChr06g0178981' => 'han', 'HanXRQChr07g0188251' => 'han', 'HanXRQChr08g0235311' => 'han', 'HanXRQChr09g0271011' => 'han', 'HanXRQChr10g0293321' => 'han', 'HanXRQChr13g0388171' => 'han', 'Haze_00916' => 'cav', 'Haze_05063' => 'cav', 'Haze_20814' => 'cav', 'Haze_24128' => 'cav', 'Hma1.2p1_0745F.1_g212010' => 'hma', 'Hma1.2p1_0757F.1_g213260' => 'hma', 'Hma1.2p1_0936F.1_g238840' => 'hma', 'Hma1.2p1_1735F.1_g299890' => 'hma', 'Hma1.2p1_1861F.1_g305685' => 'hma', 'HPP92_003397' => 'vpl', 'HPP92_012597' => 'vpl', 'HPP92_015520' => 'vpl', 'HPP92_015539' => 'vpl', 'HPP92_020373' => 'vpl', 'Hund04938' => 'sun', 'Hund10677' => 'sun', 'Hund11033' => 'sun', 'Hund12155' => 'sun', 'Lalb_Chr01g0022551' => 'lal', 'Lalb_Chr03g0042341' => 'lal', 'Lalb_Chr07g0192931' => 'lal', 'Lalb_Chr12g0209551' => 'lal', 'Lalb_Chr19g0125251' => 'lal', 'Lalb_Chr19g0137891' => 'lal', 'Lalb_Chr21g0304641' => 'lal', 'Lalb_Chr21g0309881' => 'lal', 'Lj1A5T12' => 'lonja', 'Lj1C148G10' => 'lonja', 'Lj2A93T83' => 'lonja', 'Lj3A738G68' => 'lonja', 'Lj3C966T1' => 'lonja', 'Lj3g0018958' => 'lja', 'Lj3g0021831' => 'lja', 'Lj3g0025443' => 'lja', 'Lj4g0026809' => 'lja', 'Lj5g0012558' => 'lja', 'Lj5g0021586' => 'lja', 'Lsat_1_v5_gn_5_156840' => 'lsa', 'Lsat_1_v5_gn_8_73460' => 'lsa', 'Lsat_1_v5_gn_8_73481' => 'lsa', 'Lsat_1_v5_gn_9_31601' => 'lsa', 'Lsat_1_v5_gn_9_77320' => 'lsa', 'Manes.01G171300' => 'mes', 'Manes.01G171400' => 'mes', 'Manes.01G236100' => 'mes', 'Manes.02G130500' => 'mes', 'Manes.02G130600' => 'mes', 'Manes.03G180200' => 'mes', 'Manes.05G007000' => 'mes', 'Manes.08G084400' => 'mes', 'Manes.09G092600' => 'mes', 'Manes.15G027900' => 'mes', 'MBI04_g40948_MAGBIO' => 'mbi', 'MBI14_g12123_MAGBIO' => 'mbi', 'MBI18_g28915_MAGBIO' => 'mbi', 'MCO09G053' => 'mco', 'MCO11G782' => 'mco', 'MCO15G215' => 'mco', 'MD03G1088500' => 'mdo', 'MD03G1088600' => 'mdo', 'MD04G1130800' => 'mdo', 'MD09G1291700' => 'mdo', 'MD11G1097500' => 'mdo', 'MD11G1097600' => 'mdo', 'MD12G1143900' => 'mdo', 'MD13G1191400' => 'mdo', 'MD16G1191500' => 'mdo', 'Medtr1g085570' => 'mtr', 'Medtr1g104610' => 'mtr', 'Medtr2g097520' => 'mtr', 'Medtr4g021800' => 'mtr', 'Medtr4g021825' => 'mtr', 'Medtr4g064270' => 'mtr', 'Medtr4g064380' => 'mtr', 'Medtr7g062150' => 'mtr', 'MELO3C003138.2' => 'cme', 'MELO3C005187.2' => 'cme', 'MELO3C009252.2' => 'cme', 'MELO3C014481.2' => 'cme', 'MELO3C020616.2' => 'cme', 'MELO3C020617.2' => 'cme', 'MELO3C020618.2' => 'cme', 'Migut.G00328' => 'egut', 'Migut.J00320' => 'egut', 'Migut.L01000' => 'egut', 'Migut.L01953' => 'egut', 'MSTRG.10253' => 'ama', 'MSTRG.19077' => 'ama', 'MSTRG.26780' => 'ama', 'MSTRG.4023' => 'ama', 'MSTRG.5655' => 'ama', 'MSTRG.9992' => 'ama', 'Nitab4.5_0000043g0310' => 'nta', 'Nitab4.5_0000463g0080' => 'nta', 'Nitab4.5_0000705g0170' => 'nta', 'Nitab4.5_0001326g0060' => 'nta', 'Nitab4.5_0001628g0030' => 'nta', 'Nitab4.5_0002103g0110' => 'nta', 'Nitab4.5_0002946g0030' => 'nta', 'Nitab4.5_0004639g0030' => 'nta', 'Nn2g11149' => 'nnu', 'Nn2g13389' => 'nnu', 'Nn4g25326' => 'nnu', 'Nn4g26290' => 'nnu', 'Nn5g29865' => 'nnu', 'Oeu004163.1' => 'oeu', 'Oeu006901.1' => 'oeu', 'Oeu010096.1' => 'oeu', 'Oeu024340.1' => 'oeu', 'Oeu048369.1' => 'oeu', 'Os01g0973000' => 'osa', 'Os03g0273800' => 'osa', 'Os03g0701200' => 'osa', 'Os03g0834050' => 'osa', 'Os07g0634400' => 'osa', 'Peaxi162Scf00092g01414' => 'pax', 'Peaxi162Scf00165g00818' => 'pax', 'Peaxi162Scf00309g00516' => 'pax', 'Peaxi162Scf00774g00218' => 'pax', 'PGR004G1824' => 'pgr', 'PGR004G2606' => 'pgr', 'PGR031G2716' => 'pgr', 'PGR102G2460' => 'pgr', 'PGR142G2599' => 'pgr', 'PGSC0003DMG400000843' => 'stu', 'PGSC0003DMG400008829' => 'stu', 'PGSC0003DMG400030418' => 'stu', 'PGSC0003DMG400031834' => 'stu', 'PGSC0003DMG401028300' => 'stu', 'PGSC0003DMG402028300' => 'stu', 'Phvul.001G219300' => 'pvu', 'Phvul.007G056000' => 'pvu', 'Phvul.007G208000' => 'pvu', 'Phvul.008G119500' => 'pvu', 'Phvul.010G011200' => 'pvu', 'Phvul.010G014800' => 'pvu', 'Phvul.011G062900' => 'pvu', 'Phvul.L007043' => 'pvu', 'Potri.001G242300' => 'ptr', 'Potri.002G185300' => 'ptr', 'Potri.006G086900' => 'ptr', 'Potri.008G151700' => 'ptr', 'Potri.009G033500' => 'ptr', 'Potri.010G089300' => 'ptr', 'Potri.014G110800' => 'ptr', 'Pp3c27_8130' => 'ppa', 'Pp3c6_27410' => 'ppa', 'PRCOL_00001659' => 'pco', 'PRCOL_00001927' => 'pco', 'PRCOL_00003649' => 'pco', 'Prupe.1G011600' => 'ppe', 'Prupe.3G000800' => 'ppe', 'Prupe.3G001100' => 'ppe', 'Prupe.6G072700' => 'ppe', 'Prupe.6G072800' => 'ppe', 'Prupe.6G257300' => 'ppe', 'Prupe.8G033000' => 'ppe', 'Psat0s2633g0080' => 'psa', 'Psat0s3396g0080' => 'psa', 'Psat0s3396g0200' => 'psa', 'Psat3g139080' => 'psa', 'Psat5g285080' => 'psa', 'Psat6g157760' => 'psa', 'Psat6g208440' => 'psa', 'Psat7g215320' => 'psa', 'Psat7g215400' => 'psa', 'Psat7g235600' => 'psa', 'Psat7g235760' => 'psa', 'PSO063G4603' => 'pso', 'PSO210G0182' => 'pso', 'PSO210G0196' => 'pso', 'PSO339G0394' => 'pso', 'PSO339G4127' => 'pso', 'PSO513G0064' => 'pso', 'PSO761G0079' => 'pso', 'QL01p031003' => 'qlo', 'QL01p031078' => 'qlo', 'QL06p003004' => 'qlo', 'QL07p048731' => 'qlo', 'QL09p037427' => 'qlo', 'RcHm_v2.0_Chr3g0466361' => 'rch', 'RcHm_v2.0_Chr3g0485571' => 'rch', 'RcHm_v2.0_Chr4g0416551' => 'rch', 'RcHm_v2.0_Chr5g0065831' => 'rch', 'Rhsim01G0230500' => 'rsi', 'Rhsim05G0194000' => 'rsi', 'Rhsim08G0250400' => 'rsi', 'Sabra02G0131000' => 'sbr', 'Sabra06G0066300' => 'sbr', 'Sabra08G0115500' => 'sbr', 'Sabra09G0023900' => 'sbr', 'Sabra10G0054000' => 'sbr', 'Sabra14G0081500' => 'sbr', 'Sabra16G0147100' => 'sbr', 'SalBow2G2957' => 'sbo', 'SalBow4G3320' => 'sbo', 'SalBow8G1894' => 'sbo', 'Sc07g0007950' => 'sci', 'Sc12g0001360' => 'sci', 'Sc13g0004330' => 'sci', 'Sc20g0005010' => 'sci', 'Sed0000361' => 'sed', 'Sed0001706' => 'sed', 'Sed0002422' => 'sed', 'Sed0004029' => 'sed', 'Sed0004602' => 'sed', 'Sed0004943' => 'sed', 'Sed0008646' => 'sed', 'Sed0023313' => 'sed', 'Sed0024843' => 'sed', 'SEGI_00081' => 'sgi', 'SEGI_00947' => 'sgi', 'SEGI_04046' => 'sgi', 'SEGI_06880' => 'sgi', 'SEGI_09736' => 'sgi', 'SEGI_12741' => 'sgi', 'SEGI_14530' => 'sgi', 'SEGI_20705' => 'sgi', 'SEGI_26088' => 'sgi', 'SEGI_28323' => 'sgi', 'SEGI_33343' => 'sgi', 'SGA_v2.0_scaffold126G33775' => 'sas', 'SGA_v2.0_scaffold2G01337' => 'sas', 'SGA_v2.0_scaffold38G15006' => 'sas', 'SGA_v2.0_scaffold39G15264' => 'sas', 'SGA_v2.0_scaffold453G51880' => 'sas', 'SHI12696' => 'shi', 'SMO367G1096' => 'smo', 'Solyc01g068630.3' => 'sly', 'Solyc05g011880.3' => 'sly', 'Solyc06g076300.3' => 'sly', 'Solyc09g010940.4' => 'sly', 'Solyc09g075890.3' => 'sly', 'Sopen01g030560' => 'spe', 'Sopen05g006630' => 'spe', 'Sopen06g032720' => 'spe', 'Sopen09g005660' => 'spe', 'Sopen09g030690' => 'spe', 'Sp4g14540' => 'spa', 'Sp4g20030' => 'spa', 'Sp5g01320' => 'spa', 'Sp6g21170' => 'spa', 'Sp6g21180' => 'spa', 'Sp6g21190' => 'spa', 'Sp6g40220' => 'spa', 'TAR362G0122' => 'tar', 'TAR362G1338' => 'tar', 'TAR369G0590' => 'tar', 'TAR371G0824' => 'tar', 'TAR622G1429' => 'tar', 'TAR623G0734' => 'tar', 'TAR625G0441' => 'tar', 'TAR629G0976' => 'tar', 'TAR633G1195' => 'tar', 'TAR636G2660' => 'tar', 'THA.LOC104799440' => 'tha', 'THA.LOC104800966' => 'tha', 'THA.LOC104806559' => 'tha', 'THA.LOC104810765' => 'tha', 'THA.LOC104816266' => 'tha', 'THA.LOC104817419' => 'tha', 'THA.LOC104827021' => 'tha', 'Thecc.01G327400' => 'tca', 'Thecc.04G229200' => 'tca', 'Thecc.05G037400' => 'tca', 'Thecc.09G318600' => 'tca', 'Thecc.09G318700' => 'tca', 'Thhalv10006238m.g' => 'esa', 'Thhalv10014321m.g' => 'esa', 'Thhalv10014335m.g' => 'esa', 'Thhalv10015826m.g' => 'esa', 'Thhalv10017107m.g' => 'esa', 'Thhalv10017180m.g' => 'esa', 'Thhalv10029339m.g' => 'esa', 'TPR.G1699' => 'tpr', 'TPR.G23609' => 'tpr', 'TPR.G3081' => 'tpr', 'TPR.G40397' => 'tpr', 'TPR.G5522' => 'tpr', 'TPR.G5618' => 'tpr', 'TPR.G5626' => 'tpr', 'TWI09G1632' => 'twi', 'TWI23G1230' => 'twi', 'TWI53G1064' => 'twi', 'TWI59G0751' => 'twi', 'TWI74G0947' => 'twi', 'TWI77G0337' => 'twi', 'TWI79G1254' => 'twi', 'unitig_0.g2341' => 'ugi', 'unitig_26.g10006' => 'ugi', 'unitig_26.g10008' => 'ugi', 'unitig_26.g9192' => 'ugi', 'vmacro14547' => 'vma', 'vmacro15333' => 'vma', 'vmacro18743' => 'vma', 'vmacro20166' => 'vma', 'VMungo0331G0523' => 'vmu', 'VMungo0331G1202' => 'vmu', 'VMungo0720G1228' => 'vmu', 'VMungo0720G1514' => 'vmu', 'VMungo1080G0169' => 'vmu', 'VMungo1127G1475' => 'vmu', 'VMungo1383G1208' => 'vmu', 'VMungo1383G1698' => 'vmu', 'Zm00001eb012270' => 'zma', 'Zm00001eb054100' => 'zma', 'Zm00001eb063350' => 'zma', 'Zm00001eb328560' => 'zma', 'Zm00001eb342820' => 'zma', 'Zm00001eb362210' => 'zma', 'Zm00001eb397730' => 'zma', 'Zm00001eb399750' => 'zma' ), 'gf_id' => 'HOM05D000959', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000959' ), 'data_identifier' => 'HOM05D000959', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000959', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '622', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p07100' => 'bna', 'A03p11720' => 'bna', 'A05p08300' => 'bna', 'A05p13380' => 'bna', 'A09p54130' => 'bna', 'A10p16690' => 'bna', 'A10p16700' => 'bna', 'A10p33390' => 'bna', 'Aa31LG10G16020' => 'aar', 'Aa31LG1G11810' => 'aar', 'Aa31LG1G11830' => 'aar', 'Aa31LG1G22510' => 'aar', 'Aa31LG5G4890' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5793' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2310' => 'aag', 'Actinidia08499' => 'ach', 'Actinidia11262' => 'ach', 'Actinidia23926' => 'ach', 'Actinidia34420' => 'ach', 'Actinidia36970' => 'ach', 'Ah.02g111220' => 'amhyb', 'Ah.15g097750' => 'amhyb', 'AL4G27500' => 'aly', 'AL6G11470' => 'aly', 'AL8G35950' => 'aly', 'AL8G35960' => 'aly', 'AL8G35970' => 'aly', 'Aqoxy1G00912' => 'aox', 'Aqoxy2G02253' => 'aox', 'Aqoxy2G02411' => 'aox', 'Aqoxy5G00485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BZ66YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K8ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM4FUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6BF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HFV7XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25JBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0YNNV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MAKK6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P70IT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP2Z6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V61LZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YWP64R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3S9AI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7PGHH' => 'arhy', 'AT2G32150' => 'ath', 'AT3G62040' => 'ath', 'AT5G02230' => 'ath', 'AT5G59480' => 'ath', 'AT5G59490' => 'ath', 'ATR0332G060' => 'atr', 'ATR0559G190' => 'atr', 'ATR0693G294' => 'atr', 'Atru.chr3.3975' => 'acertr', 'Atru.chr3.3976' => 'acertr', 'Atru.chr3.3977' => 'acertr', 'Atru.chr4.2498' => 'acertr', 'Atru.chr5.838' => 'acertr', 'Atru.chr8.1990' => 'acertr', 'Atru.chr8.1991' => 'acertr', 'Atru.chr8.1992' => 'acertr', 'AUR62001759' => 'cqu', 'AUR62009545' => 'cqu', 'AUR62010474' => 'cqu', 'AUR62025820' => 'cqu', 'AUR62030422' => 'cqu', 'AUR62033605' => 'cqu', 'AUR62038615' => 'cqu', 'AUR62041347' => 'cqu', 'BcaB01g04574' => 'bca', 'BcaB02g09263' => 'bca', 'BcaB02g10453' => 'bca', 'BcaB05g22513' => 'bca', 'BcaB08g36253' => 'bca', 'BcaB08g36254' => 'bca', 'BcaC01g06519' => 'bca', 'BcaC02g11889' => 'bca', 'BcaC03g14010' => 'bca', 'BcaC03g18439' => 'bca', 'BcaC04g19765' => 'bca', 'BcaC09g48432' => 'bca', 'BcaNung07302' => 'bca', 'BolC2t06040H' => 'bol', 'BolC2t07346H' => 'bol', 'BolC3t13817H' => 'bol', 'BolC4t22625H' => 'bol', 'BolC4t23297H' => 'bol', 'BolC8t51278H' => 'bol', 'BolC9t58050H' => 'bol', 'BolC9t58051H' => 'bol', 'BolC9t60163H' => 'bol', 'BraA02t04712Z' => 'bra', 'BraA02t05791Z' => 'bra', 'BraA03t10483Z' => 'bra', 'BraA05t19795Z' => 'bra', 'BraA05t20276Z' => 'bra', 'BraA09t40827Z' => 'bra', 'BraA10t43750Z' => 'bra', 'BraA10t43751Z' => 'bra', 'BraA10t45370Z' => 'bra', 'C02p00400' => 'bna', 'C02p12460' => 'bna', 'C03p13680' => 'bna', 'C04p10270' => 'bna', 'C04p17500' => 'bna', 'C08p37010' => 'bna', 'C09p51880' => 'bna', 'C09p51890' => 'bna', 'C09p74300' => 'bna', 'CAN.G179.26' => 'can', 'CAN.G3384.1' => 'can', 'CAN.G394.68' => 'can', 'CAN.G907.13' => 'can', 'CANSAT11G0012' => 'cansat', 'CANSAT25G1586' => 'cansat', 'CANSAT35G0735' => 'cansat', 'CANSAT54G0556' => 'cansat', 'CANSAT64G0356' => 'cansat', 'CANSAT78G2042' => 'cansat', 'CARHR125920' => 'chi', 'CARHR131910' => 'chi', 'CARHR172390' => 'chi', 'CARHR211140' => 'chi', 'CARHR285850' => 'chi', 'CARHR285860' => 'chi', 'Carub.0004s1347' => 'cru', 'Carub.0004s1960' => 'cru', 'Carub.0005s2880' => 'cru', 'Carub.0006s0107' => 'cru', 'Carub.0008s2015' => 'cru', 'Carub.0008s2016' => 'cru', 'Carub.0008s2017' => 'cru', 'Ca_01315_v3' => 'car', 'Ca_05063_v3' => 'car', 'Ca_10231_v3' => 'car', 'Ca_10913_v3' => 'car', 'Ca_19156_v3' => 'car', 'Ca_23644_v3' => 'car', 'Ca_26735_v3' => 'car', 'Cc01_g13130' => 'ccan', 'Cc02_g21690' => 'ccan', 'Cc03_g03600' => 'ccan', 'Cc06_g02510' => 'ccan', 'CDE02G1265' => 'cde', 'CDE05G0415' => 'cde', 'CDE08G1082' => 'cde', 'Cfa005780' => 'cfa', 'Cfa011522' => 'cfa', 'Cfa011523' => 'cfa', 'Cfa015627' => 'cfa', 'Cfa017359' => 'cfa', 'Ciclev10005687m.g' => 'ccl', 'Ciclev10012173m.g' => 'ccl', 'Ciclev10021621m.g' => 'ccl', 'Ciclev10028968m.g' => 'ccl', 'Ciclev10029907m.g' => 'ccl', 'CiPaw.01G164800' => 'cil', 'CiPaw.07G083700' => 'cil', 'CiPaw.07G127000' => 'cil', 'CiPaw.07G136900' => 'cil', 'CiPaw.08G081700' => 'cil', 'CiPaw.09G194600' => 'cil', 'CiPaw.10G146500' => 'cil', 'CiPaw.13G091500' => 'cil', 'CiPaw.13G091600' => 'cil', 'ClCG00G003390' => 'cla', 'ClCG01G007220' => 'cla', 'ClCG03G001370' => 'cla', 'ClCG04G008100' => 'cla', 'ClCG06G006110' => 'cla', 'ClCG06G006130' => 'cla', 'ClCG10G021210' => 'cla', 'COL.COLO4_07648' => 'col', 'COL.COLO4_07650' => 'col', 'COL.COLO4_07651' => 'col', 'COL.COLO4_14780' => 'col', 'COL.COLO4_18546' => 'col', 'COL.COLO4_18547' => 'col', 'COL.COLO4_23103' => 'col', 'COL.COLO4_30419' => 'col', 'COL.COLO4_34232' => 'col', 'Cpa.g.sc169.20' => 'cpa', 'Cpa.g.sc57.45' => 'cpa', 'Cpa.g.sc58.124' => 'cpa', 'Cpa.g.sc58.125' => 'cpa', 'Cpa.g.sc81.118' => 'cpa', 'Cpa.g.sc81.119' => 'cpa', 'Cre12.g524700' => 'cre', 'CsaV3_1G034430' => 'csa', 'CsaV3_1G034440' => 'csa', 'CsaV3_1G034450' => 'csa', 'CsaV3_3G034830' => 'csa', 'CsaV3_4G025090' => 'csa', 'CsaV3_5G018660' => 'csa', 'CsaV3_6G038160' => 'csa', 'CSS0003447' => 'camsi', 'CSS0017840' => 'camsi', 'CSS0019260' => 'camsi', 'CSS0040375' => 'camsi', 'CSS0042533' => 'camsi', 'DCAR_005960' => 'dca', 'DCAR_012104' => 'dca', 'DCAR_012105' => 'dca', 'DCAR_012293' => 'dca', 'DCAR_015632' => 'dca', 'DCAR_024602' => 'dca', 'DCAR_028752' => 'dca', 'Dinv06261' => 'din', 'Dinv13982' => 'din', 'Dinv17029' => 'din', 'Dinv18463' => 'din', 'Dinv33181' => 'din', 'Dinv35585' => 'din', 'Dinv37161' => 'din', 'Dinv42977' => 'din', 'Dinv43122' => 'din', 'Dinv44517' => 'din', 'Duzib093G0256' => 'dzi', 'Duzib106G1254' => 'dzi', 'Duzib128G1789' => 'dzi', 'Duzib133G0633' => 'dzi', 'Duzib138G0510' => 'dzi', 'Duzib150G1084' => 'dzi', 'Duzib168G0488' => 'dzi', 'Duzib168G1523' => 'dzi', 'Duzib170G0133' => 'dzi', 'ECA234G1433' => 'eca', 'ECA236G1432' => 'eca', 'ECA236G2256' => 'eca', 'ECA236G2365' => 'eca', 'ECA236G4830' => 'eca', 'ECA248G1505' => 'eca', 'EL10Ac3g06431' => 'bvu', 'EL10Ac5g12577' => 'bvu', 'EL10Ac6g13533' => 'bvu', 'EL10Ac7g16045' => 'bvu', 'Eucgr.A01281' => 'egr', 'Eucgr.B02326' => 'egr', 'Eucgr.H03532' => 'egr', 'Eucgr.K00553' => 'egr', 'Eucgr.K03116' => 'egr', 'FAN02G3963' => 'fan', 'FAN05G0438' => 'fan', 'FAN09G2434' => 'fan', 'FAN12G3984' => 'fan', 'FAN14G0798' => 'fan', 'FAN17G0652' => 'fan', 'FAN19G1988' => 'fan', 'FAN22G0632' => 'fan', 'FAN23G0387' => 'fan', 'FAN26G1323' => 'fan', 'FAN28G0666' => 'fan', 'FvH4_1g26080' => 'fve', 'FvH4_3g36780' => 'fve', 'FvH4_4g15270' => 'fve', 'FvH4_6g13490' => 'fve', 'Glyma.01G098700' => 'gma', 'Glyma.03G065900' => 'gma', 'Glyma.03G073754' => 'gma', 'Glyma.03G073758' => 'gma', 'Glyma.03G083200' => 'gma', 'Glyma.03G225500' => 'gma', 'Glyma.05G037766' => 'gma', 'Glyma.07G133500' => 'gma', 'Glyma.10G139400' => 'gma', 'Glyma.10G248900' => 'gma', 'Glyma.11G137800' => 'gma', 'Glyma.12G061300' => 'gma', 'Glyma.13G337900' => 'gma', 'Glyma.15G036600' => 'gma', 'Glyma.18G182800' => 'gma', 'Glyma.19G222500' => 'gma', 'Glyma.20G144800' => 'gma', 'Gohir.A01G222000' => 'ghi', 'Gohir.A03G044000' => 'ghi', 'Gohir.A03G044100' => 'ghi', 'Gohir.A04G083100' => 'ghi', 'Gohir.A07G127200' => 'ghi', 'Gohir.A07G132400' => 'ghi', 'Gohir.A08G000700' => 'ghi', 'Gohir.A11G327300' => 'ghi', 'Gohir.D01G211500' => 'ghi', 'Gohir.D03G123400' => 'ghi', 'Gohir.D03G123500' => 'ghi', 'Gohir.D04G121800' => 'ghi', 'Gohir.D07G131500' => 'ghi', 'Gohir.D07G136600' => 'ghi', 'Gohir.D08G011600' => 'ghi', 'Gohir.D11G346200' => 'ghi', 'Gorai.001G142800' => 'gra', 'Gorai.001G148700' => 'gra', 'Gorai.002G257300' => 'gra', 'Gorai.003G130000' => 'gra', 'Gorai.003G130100' => 'gra', 'Gorai.004G005300' => 'gra', 'Gorai.007G376500' => 'gra', 'Gorai.012G104700' => 'gra', 'GSVIVG01017946001' => 'vvi', 'GSVIVG01024928001' => 'vvi', 'GSVIVG01028227001' => 'vvi', 'GSVIVG01034151001' => 'vvi', 'HanXRQChr05g0135031' => 'han', 'HanXRQChr05g0135041' => 'han', 'HanXRQChr05g0140021' => 'han', 'HanXRQChr06g0178981' => 'han', 'HanXRQChr07g0188251' => 'han', 'HanXRQChr08g0235311' => 'han', 'HanXRQChr09g0271011' => 'han', 'HanXRQChr10g0293321' => 'han', 'HanXRQChr13g0388171' => 'han', 'Haze_00916' => 'cav', 'Haze_05063' => 'cav', 'Haze_20814' => 'cav', 'Haze_24128' => 'cav', 'Hma1.2p1_0745F.1_g212010' => 'hma', 'Hma1.2p1_0757F.1_g213260' => 'hma', 'Hma1.2p1_0936F.1_g238840' => 'hma', 'Hma1.2p1_1735F.1_g299890' => 'hma', 'Hma1.2p1_1861F.1_g305685' => 'hma', 'HPP92_003397' => 'vpl', 'HPP92_012597' => 'vpl', 'HPP92_015520' => 'vpl', 'HPP92_015539' => 'vpl', 'HPP92_020373' => 'vpl', 'Hund04938' => 'sun', 'Hund10677' => 'sun', 'Hund11033' => 'sun', 'Hund12155' => 'sun', 'Lalb_Chr01g0022551' => 'lal', 'Lalb_Chr03g0042341' => 'lal', 'Lalb_Chr07g0192931' => 'lal', 'Lalb_Chr12g0209551' => 'lal', 'Lalb_Chr19g0125251' => 'lal', 'Lalb_Chr19g0137891' => 'lal', 'Lalb_Chr21g0304641' => 'lal', 'Lalb_Chr21g0309881' => 'lal', 'Lj1A5T12' => 'lonja', 'Lj1C148G10' => 'lonja', 'Lj2A93T83' => 'lonja', 'Lj3A738G68' => 'lonja', 'Lj3C966T1' => 'lonja', 'Lj3g0018958' => 'lja', 'Lj3g0021831' => 'lja', 'Lj3g0025443' => 'lja', 'Lj4g0026809' => 'lja', 'Lj5g0012558' => 'lja', 'Lj5g0021586' => 'lja', 'Lsat_1_v5_gn_5_156840' => 'lsa', 'Lsat_1_v5_gn_8_73460' => 'lsa', 'Lsat_1_v5_gn_8_73481' => 'lsa', 'Lsat_1_v5_gn_9_31601' => 'lsa', 'Lsat_1_v5_gn_9_77320' => 'lsa', 'Manes.01G171300' => 'mes', 'Manes.01G171400' => 'mes', 'Manes.01G236100' => 'mes', 'Manes.02G130500' => 'mes', 'Manes.02G130600' => 'mes', 'Manes.03G180200' => 'mes', 'Manes.05G007000' => 'mes', 'Manes.08G084400' => 'mes', 'Manes.09G092600' => 'mes', 'Manes.15G027900' => 'mes', 'MBI04_g40948_MAGBIO' => 'mbi', 'MBI14_g12123_MAGBIO' => 'mbi', 'MBI18_g28915_MAGBIO' => 'mbi', 'MCO09G053' => 'mco', 'MCO11G782' => 'mco', 'MCO15G215' => 'mco', 'MD03G1088500' => 'mdo', 'MD03G1088600' => 'mdo', 'MD04G1130800' => 'mdo', 'MD09G1291700' => 'mdo', 'MD11G1097500' => 'mdo', 'MD11G1097600' => 'mdo', 'MD12G1143900' => 'mdo', 'MD13G1191400' => 'mdo', 'MD16G1191500' => 'mdo', 'Medtr1g085570' => 'mtr', 'Medtr1g104610' => 'mtr', 'Medtr2g097520' => 'mtr', 'Medtr4g021800' => 'mtr', 'Medtr4g021825' => 'mtr', 'Medtr4g064270' => 'mtr', 'Medtr4g064380' => 'mtr', 'Medtr7g062150' => 'mtr', 'MELO3C003138.2' => 'cme', 'MELO3C005187.2' => 'cme', 'MELO3C009252.2' => 'cme', 'MELO3C014481.2' => 'cme', 'MELO3C020616.2' => 'cme', 'MELO3C020617.2' => 'cme', 'MELO3C020618.2' => 'cme', 'Migut.G00328' => 'egut', 'Migut.J00320' => 'egut', 'Migut.L01000' => 'egut', 'Migut.L01953' => 'egut', 'MSTRG.10253' => 'ama', 'MSTRG.19077' => 'ama', 'MSTRG.26780' => 'ama', 'MSTRG.4023' => 'ama', 'MSTRG.5655' => 'ama', 'MSTRG.9992' => 'ama', 'Nitab4.5_0000043g0310' => 'nta', 'Nitab4.5_0000463g0080' => 'nta', 'Nitab4.5_0000705g0170' => 'nta', 'Nitab4.5_0001326g0060' => 'nta', 'Nitab4.5_0001628g0030' => 'nta', 'Nitab4.5_0002103g0110' => 'nta', 'Nitab4.5_0002946g0030' => 'nta', 'Nitab4.5_0004639g0030' => 'nta', 'Nn2g11149' => 'nnu', 'Nn2g13389' => 'nnu', 'Nn4g25326' => 'nnu', 'Nn4g26290' => 'nnu', 'Nn5g29865' => 'nnu', 'Oeu004163.1' => 'oeu', 'Oeu006901.1' => 'oeu', 'Oeu010096.1' => 'oeu', 'Oeu024340.1' => 'oeu', 'Oeu048369.1' => 'oeu', 'Os01g0973000' => 'osa', 'Os03g0273800' => 'osa', 'Os03g0701200' => 'osa', 'Os03g0834050' => 'osa', 'Os07g0634400' => 'osa', 'Peaxi162Scf00092g01414' => 'pax', 'Peaxi162Scf00165g00818' => 'pax', 'Peaxi162Scf00309g00516' => 'pax', 'Peaxi162Scf00774g00218' => 'pax', 'PGR004G1824' => 'pgr', 'PGR004G2606' => 'pgr', 'PGR031G2716' => 'pgr', 'PGR102G2460' => 'pgr', 'PGR142G2599' => 'pgr', 'PGSC0003DMG400000843' => 'stu', 'PGSC0003DMG400008829' => 'stu', 'PGSC0003DMG400030418' => 'stu', 'PGSC0003DMG400031834' => 'stu', 'PGSC0003DMG401028300' => 'stu', 'PGSC0003DMG402028300' => 'stu', 'Phvul.001G219300' => 'pvu', 'Phvul.007G056000' => 'pvu', 'Phvul.007G208000' => 'pvu', 'Phvul.008G119500' => 'pvu', 'Phvul.010G011200' => 'pvu', 'Phvul.010G014800' => 'pvu', 'Phvul.011G062900' => 'pvu', 'Phvul.L007043' => 'pvu', 'Potri.001G242300' => 'ptr', 'Potri.002G185300' => 'ptr', 'Potri.006G086900' => 'ptr', 'Potri.008G151700' => 'ptr', 'Potri.009G033500' => 'ptr', 'Potri.010G089300' => 'ptr', 'Potri.014G110800' => 'ptr', 'Pp3c27_8130' => 'ppa', 'Pp3c6_27410' => 'ppa', 'PRCOL_00001659' => 'pco', 'PRCOL_00001927' => 'pco', 'PRCOL_00003649' => 'pco', 'Prupe.1G011600' => 'ppe', 'Prupe.3G000800' => 'ppe', 'Prupe.3G001100' => 'ppe', 'Prupe.6G072700' => 'ppe', 'Prupe.6G072800' => 'ppe', 'Prupe.6G257300' => 'ppe', 'Prupe.8G033000' => 'ppe', 'Psat0s2633g0080' => 'psa', 'Psat0s3396g0080' => 'psa', 'Psat0s3396g0200' => 'psa', 'Psat3g139080' => 'psa', 'Psat5g285080' => 'psa', 'Psat6g157760' => 'psa', 'Psat6g208440' => 'psa', 'Psat7g215320' => 'psa', 'Psat7g215400' => 'psa', 'Psat7g235600' => 'psa', 'Psat7g235760' => 'psa', 'PSO063G4603' => 'pso', 'PSO210G0182' => 'pso', 'PSO210G0196' => 'pso', 'PSO339G0394' => 'pso', 'PSO339G4127' => 'pso', 'PSO513G0064' => 'pso', 'PSO761G0079' => 'pso', 'QL01p031003' => 'qlo', 'QL01p031078' => 'qlo', 'QL06p003004' => 'qlo', 'QL07p048731' => 'qlo', 'QL09p037427' => 'qlo', 'RcHm_v2.0_Chr3g0466361' => 'rch', 'RcHm_v2.0_Chr3g0485571' => 'rch', 'RcHm_v2.0_Chr4g0416551' => 'rch', 'RcHm_v2.0_Chr5g0065831' => 'rch', 'Rhsim01G0230500' => 'rsi', 'Rhsim05G0194000' => 'rsi', 'Rhsim08G0250400' => 'rsi', 'Sabra02G0131000' => 'sbr', 'Sabra06G0066300' => 'sbr', 'Sabra08G0115500' => 'sbr', 'Sabra09G0023900' => 'sbr', 'Sabra10G0054000' => 'sbr', 'Sabra14G0081500' => 'sbr', 'Sabra16G0147100' => 'sbr', 'SalBow2G2957' => 'sbo', 'SalBow4G3320' => 'sbo', 'SalBow8G1894' => 'sbo', 'Sc07g0007950' => 'sci', 'Sc12g0001360' => 'sci', 'Sc13g0004330' => 'sci', 'Sc20g0005010' => 'sci', 'Sed0000361' => 'sed', 'Sed0001706' => 'sed', 'Sed0002422' => 'sed', 'Sed0004029' => 'sed', 'Sed0004602' => 'sed', 'Sed0004943' => 'sed', 'Sed0008646' => 'sed', 'Sed0023313' => 'sed', 'Sed0024843' => 'sed', 'SEGI_00081' => 'sgi', 'SEGI_00947' => 'sgi', 'SEGI_04046' => 'sgi', 'SEGI_06880' => 'sgi', 'SEGI_09736' => 'sgi', 'SEGI_12741' => 'sgi', 'SEGI_14530' => 'sgi', 'SEGI_20705' => 'sgi', 'SEGI_26088' => 'sgi', 'SEGI_28323' => 'sgi', 'SEGI_33343' => 'sgi', 'SGA_v2.0_scaffold126G33775' => 'sas', 'SGA_v2.0_scaffold2G01337' => 'sas', 'SGA_v2.0_scaffold38G15006' => 'sas', 'SGA_v2.0_scaffold39G15264' => 'sas', 'SGA_v2.0_scaffold453G51880' => 'sas', 'SHI12696' => 'shi', 'SMO367G1096' => 'smo', 'Solyc01g068630.3' => 'sly', 'Solyc05g011880.3' => 'sly', 'Solyc06g076300.3' => 'sly', 'Solyc09g010940.4' => 'sly', 'Solyc09g075890.3' => 'sly', 'Sopen01g030560' => 'spe', 'Sopen05g006630' => 'spe', 'Sopen06g032720' => 'spe', 'Sopen09g005660' => 'spe', 'Sopen09g030690' => 'spe', 'Sp4g14540' => 'spa', 'Sp4g20030' => 'spa', 'Sp5g01320' => 'spa', 'Sp6g21170' => 'spa', 'Sp6g21180' => 'spa', 'Sp6g21190' => 'spa', 'Sp6g40220' => 'spa', 'TAR362G0122' => 'tar', 'TAR362G1338' => 'tar', 'TAR369G0590' => 'tar', 'TAR371G0824' => 'tar', 'TAR622G1429' => 'tar', 'TAR623G0734' => 'tar', 'TAR625G0441' => 'tar', 'TAR629G0976' => 'tar', 'TAR633G1195' => 'tar', 'TAR636G2660' => 'tar', 'THA.LOC104799440' => 'tha', 'THA.LOC104800966' => 'tha', 'THA.LOC104806559' => 'tha', 'THA.LOC104810765' => 'tha', 'THA.LOC104816266' => 'tha', 'THA.LOC104817419' => 'tha', 'THA.LOC104827021' => 'tha', 'Thecc.01G327400' => 'tca', 'Thecc.04G229200' => 'tca', 'Thecc.05G037400' => 'tca', 'Thecc.09G318600' => 'tca', 'Thecc.09G318700' => 'tca', 'Thhalv10006238m.g' => 'esa', 'Thhalv10014321m.g' => 'esa', 'Thhalv10014335m.g' => 'esa', 'Thhalv10015826m.g' => 'esa', 'Thhalv10017107m.g' => 'esa', 'Thhalv10017180m.g' => 'esa', 'Thhalv10029339m.g' => 'esa', 'TPR.G1699' => 'tpr', 'TPR.G23609' => 'tpr', 'TPR.G3081' => 'tpr', 'TPR.G40397' => 'tpr', 'TPR.G5522' => 'tpr', 'TPR.G5618' => 'tpr', 'TPR.G5626' => 'tpr', 'TWI09G1632' => 'twi', 'TWI23G1230' => 'twi', 'TWI53G1064' => 'twi', 'TWI59G0751' => 'twi', 'TWI74G0947' => 'twi', 'TWI77G0337' => 'twi', 'TWI79G1254' => 'twi', 'unitig_0.g2341' => 'ugi', 'unitig_26.g10006' => 'ugi', 'unitig_26.g10008' => 'ugi', 'unitig_26.g9192' => 'ugi', 'vmacro14547' => 'vma', 'vmacro15333' => 'vma', 'vmacro18743' => 'vma', 'vmacro20166' => 'vma', 'VMungo0331G0523' => 'vmu', 'VMungo0331G1202' => 'vmu', 'VMungo0720G1228' => 'vmu', 'VMungo0720G1514' => 'vmu', 'VMungo1080G0169' => 'vmu', 'VMungo1127G1475' => 'vmu', 'VMungo1383G1208' => 'vmu', 'VMungo1383G1698' => 'vmu', 'Zm00001eb012270' => 'zma', 'Zm00001eb054100' => 'zma', 'Zm00001eb063350' => 'zma', 'Zm00001eb328560' => 'zma', 'Zm00001eb342820' => 'zma', 'Zm00001eb362210' => 'zma', 'Zm00001eb397730' => 'zma', 'Zm00001eb399750' => 'zma' ) $gf_id = 'HOM05D000959' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000959' ) $data_identifier = 'HOM05D000959' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 5, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 5, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 10, 'mbi' => (int) 3, 'mco' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 2, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 3, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 11, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399750' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000959', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '622', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p07100' => 'bna', 'A03p11720' => 'bna', 'A05p08300' => 'bna', 'A05p13380' => 'bna', 'A09p54130' => 'bna', 'A10p16690' => 'bna', 'A10p16700' => 'bna', 'A10p33390' => 'bna', 'Aa31LG10G16020' => 'aar', 'Aa31LG1G11810' => 'aar', 'Aa31LG1G11830' => 'aar', 'Aa31LG1G22510' => 'aar', 'Aa31LG5G4890' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5793' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2310' => 'aag', 'Actinidia08499' => 'ach', 'Actinidia11262' => 'ach', 'Actinidia23926' => 'ach', 'Actinidia34420' => 'ach', 'Actinidia36970' => 'ach', 'Ah.02g111220' => 'amhyb', 'Ah.15g097750' => 'amhyb', 'AL4G27500' => 'aly', 'AL6G11470' => 'aly', 'AL8G35950' => 'aly', 'AL8G35960' => 'aly', 'AL8G35970' => 'aly', 'Aqoxy1G00912' => 'aox', 'Aqoxy2G02253' => 'aox', 'Aqoxy2G02411' => 'aox', 'Aqoxy5G00485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BZ66YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K8ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM4FUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6BF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HFV7XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25JBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0YNNV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MAKK6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P70IT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP2Z6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V61LZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YWP64R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3S9AI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7PGHH' => 'arhy', 'AT2G32150' => 'ath', 'AT3G62040' => 'ath', 'AT5G02230' => 'ath', 'AT5G59480' => 'ath', 'AT5G59490' => 'ath', 'ATR0332G060' => 'atr', 'ATR0559G190' => 'atr', 'ATR0693G294' => 'atr', 'Atru.chr3.3975' => 'acertr', 'Atru.chr3.3976' => 'acertr', 'Atru.chr3.3977' => 'acertr', 'Atru.chr4.2498' => 'acertr', 'Atru.chr5.838' => 'acertr', 'Atru.chr8.1990' => 'acertr', 'Atru.chr8.1991' => 'acertr', 'Atru.chr8.1992' => 'acertr', 'AUR62001759' => 'cqu', 'AUR62009545' => 'cqu', 'AUR62010474' => 'cqu', 'AUR62025820' => 'cqu', 'AUR62030422' => 'cqu', 'AUR62033605' => 'cqu', 'AUR62038615' => 'cqu', 'AUR62041347' => 'cqu', 'BcaB01g04574' => 'bca', 'BcaB02g09263' => 'bca', 'BcaB02g10453' => 'bca', 'BcaB05g22513' => 'bca', 'BcaB08g36253' => 'bca', 'BcaB08g36254' => 'bca', 'BcaC01g06519' => 'bca', 'BcaC02g11889' => 'bca', 'BcaC03g14010' => 'bca', 'BcaC03g18439' => 'bca', 'BcaC04g19765' => 'bca', 'BcaC09g48432' => 'bca', 'BcaNung07302' => 'bca', 'BolC2t06040H' => 'bol', 'BolC2t07346H' => 'bol', 'BolC3t13817H' => 'bol', 'BolC4t22625H' => 'bol', 'BolC4t23297H' => 'bol', 'BolC8t51278H' => 'bol', 'BolC9t58050H' => 'bol', 'BolC9t58051H' => 'bol', 'BolC9t60163H' => 'bol', 'BraA02t04712Z' => 'bra', 'BraA02t05791Z' => 'bra', 'BraA03t10483Z' => 'bra', 'BraA05t19795Z' => 'bra', 'BraA05t20276Z' => 'bra', 'BraA09t40827Z' => 'bra', 'BraA10t43750Z' => 'bra', 'BraA10t43751Z' => 'bra', 'BraA10t45370Z' => 'bra', 'C02p00400' => 'bna', 'C02p12460' => 'bna', 'C03p13680' => 'bna', 'C04p10270' => 'bna', 'C04p17500' => 'bna', 'C08p37010' => 'bna', 'C09p51880' => 'bna', 'C09p51890' => 'bna', 'C09p74300' => 'bna', 'CAN.G179.26' => 'can', 'CAN.G3384.1' => 'can', 'CAN.G394.68' => 'can', 'CAN.G907.13' => 'can', 'CANSAT11G0012' => 'cansat', 'CANSAT25G1586' => 'cansat', 'CANSAT35G0735' => 'cansat', 'CANSAT54G0556' => 'cansat', 'CANSAT64G0356' => 'cansat', 'CANSAT78G2042' => 'cansat', 'CARHR125920' => 'chi', 'CARHR131910' => 'chi', 'CARHR172390' => 'chi', 'CARHR211140' => 'chi', 'CARHR285850' => 'chi', 'CARHR285860' => 'chi', 'Carub.0004s1347' => 'cru', 'Carub.0004s1960' => 'cru', 'Carub.0005s2880' => 'cru', 'Carub.0006s0107' => 'cru', 'Carub.0008s2015' => 'cru', 'Carub.0008s2016' => 'cru', 'Carub.0008s2017' => 'cru', 'Ca_01315_v3' => 'car', 'Ca_05063_v3' => 'car', 'Ca_10231_v3' => 'car', 'Ca_10913_v3' => 'car', 'Ca_19156_v3' => 'car', 'Ca_23644_v3' => 'car', 'Ca_26735_v3' => 'car', 'Cc01_g13130' => 'ccan', 'Cc02_g21690' => 'ccan', 'Cc03_g03600' => 'ccan', 'Cc06_g02510' => 'ccan', 'CDE02G1265' => 'cde', 'CDE05G0415' => 'cde', 'CDE08G1082' => 'cde', 'Cfa005780' => 'cfa', 'Cfa011522' => 'cfa', 'Cfa011523' => 'cfa', 'Cfa015627' => 'cfa', 'Cfa017359' => 'cfa', 'Ciclev10005687m.g' => 'ccl', 'Ciclev10012173m.g' => 'ccl', 'Ciclev10021621m.g' => 'ccl', 'Ciclev10028968m.g' => 'ccl', 'Ciclev10029907m.g' => 'ccl', 'CiPaw.01G164800' => 'cil', 'CiPaw.07G083700' => 'cil', 'CiPaw.07G127000' => 'cil', 'CiPaw.07G136900' => 'cil', 'CiPaw.08G081700' => 'cil', 'CiPaw.09G194600' => 'cil', 'CiPaw.10G146500' => 'cil', 'CiPaw.13G091500' => 'cil', 'CiPaw.13G091600' => 'cil', 'ClCG00G003390' => 'cla', 'ClCG01G007220' => 'cla', 'ClCG03G001370' => 'cla', 'ClCG04G008100' => 'cla', 'ClCG06G006110' => 'cla', 'ClCG06G006130' => 'cla', 'ClCG10G021210' => 'cla', 'COL.COLO4_07648' => 'col', 'COL.COLO4_07650' => 'col', 'COL.COLO4_07651' => 'col', 'COL.COLO4_14780' => 'col', 'COL.COLO4_18546' => 'col', 'COL.COLO4_18547' => 'col', 'COL.COLO4_23103' => 'col', 'COL.COLO4_30419' => 'col', 'COL.COLO4_34232' => 'col', 'Cpa.g.sc169.20' => 'cpa', 'Cpa.g.sc57.45' => 'cpa', 'Cpa.g.sc58.124' => 'cpa', 'Cpa.g.sc58.125' => 'cpa', 'Cpa.g.sc81.118' => 'cpa', 'Cpa.g.sc81.119' => 'cpa', 'Cre12.g524700' => 'cre', 'CsaV3_1G034430' => 'csa', 'CsaV3_1G034440' => 'csa', 'CsaV3_1G034450' => 'csa', 'CsaV3_3G034830' => 'csa', 'CsaV3_4G025090' => 'csa', 'CsaV3_5G018660' => 'csa', 'CsaV3_6G038160' => 'csa', 'CSS0003447' => 'camsi', 'CSS0017840' => 'camsi', 'CSS0019260' => 'camsi', 'CSS0040375' => 'camsi', 'CSS0042533' => 'camsi', 'DCAR_005960' => 'dca', 'DCAR_012104' => 'dca', 'DCAR_012105' => 'dca', 'DCAR_012293' => 'dca', 'DCAR_015632' => 'dca', 'DCAR_024602' => 'dca', 'DCAR_028752' => 'dca', 'Dinv06261' => 'din', 'Dinv13982' => 'din', 'Dinv17029' => 'din', 'Dinv18463' => 'din', 'Dinv33181' => 'din', 'Dinv35585' => 'din', 'Dinv37161' => 'din', 'Dinv42977' => 'din', 'Dinv43122' => 'din', 'Dinv44517' => 'din', 'Duzib093G0256' => 'dzi', 'Duzib106G1254' => 'dzi', 'Duzib128G1789' => 'dzi', 'Duzib133G0633' => 'dzi', 'Duzib138G0510' => 'dzi', 'Duzib150G1084' => 'dzi', 'Duzib168G0488' => 'dzi', 'Duzib168G1523' => 'dzi', 'Duzib170G0133' => 'dzi', 'ECA234G1433' => 'eca', 'ECA236G1432' => 'eca', 'ECA236G2256' => 'eca', 'ECA236G2365' => 'eca', 'ECA236G4830' => 'eca', 'ECA248G1505' => 'eca', 'EL10Ac3g06431' => 'bvu', 'EL10Ac5g12577' => 'bvu', 'EL10Ac6g13533' => 'bvu', 'EL10Ac7g16045' => 'bvu', 'Eucgr.A01281' => 'egr', 'Eucgr.B02326' => 'egr', 'Eucgr.H03532' => 'egr', 'Eucgr.K00553' => 'egr', 'Eucgr.K03116' => 'egr', 'FAN02G3963' => 'fan', 'FAN05G0438' => 'fan', 'FAN09G2434' => 'fan', 'FAN12G3984' => 'fan', 'FAN14G0798' => 'fan', 'FAN17G0652' => 'fan', 'FAN19G1988' => 'fan', 'FAN22G0632' => 'fan', 'FAN23G0387' => 'fan', 'FAN26G1323' => 'fan', 'FAN28G0666' => 'fan', 'FvH4_1g26080' => 'fve', 'FvH4_3g36780' => 'fve', 'FvH4_4g15270' => 'fve', 'FvH4_6g13490' => 'fve', 'Glyma.01G098700' => 'gma', 'Glyma.03G065900' => 'gma', 'Glyma.03G073754' => 'gma', 'Glyma.03G073758' => 'gma', 'Glyma.03G083200' => 'gma', 'Glyma.03G225500' => 'gma', 'Glyma.05G037766' => 'gma', 'Glyma.07G133500' => 'gma', 'Glyma.10G139400' => 'gma', 'Glyma.10G248900' => 'gma', 'Glyma.11G137800' => 'gma', 'Glyma.12G061300' => 'gma', 'Glyma.13G337900' => 'gma', 'Glyma.15G036600' => 'gma', 'Glyma.18G182800' => 'gma', 'Glyma.19G222500' => 'gma', 'Glyma.20G144800' => 'gma', 'Gohir.A01G222000' => 'ghi', 'Gohir.A03G044000' => 'ghi', 'Gohir.A03G044100' => 'ghi', 'Gohir.A04G083100' => 'ghi', 'Gohir.A07G127200' => 'ghi', 'Gohir.A07G132400' => 'ghi', 'Gohir.A08G000700' => 'ghi', 'Gohir.A11G327300' => 'ghi', 'Gohir.D01G211500' => 'ghi', 'Gohir.D03G123400' => 'ghi', 'Gohir.D03G123500' => 'ghi', 'Gohir.D04G121800' => 'ghi', 'Gohir.D07G131500' => 'ghi', 'Gohir.D07G136600' => 'ghi', 'Gohir.D08G011600' => 'ghi', 'Gohir.D11G346200' => 'ghi', 'Gorai.001G142800' => 'gra', 'Gorai.001G148700' => 'gra', 'Gorai.002G257300' => 'gra', 'Gorai.003G130000' => 'gra', 'Gorai.003G130100' => 'gra', 'Gorai.004G005300' => 'gra', 'Gorai.007G376500' => 'gra', 'Gorai.012G104700' => 'gra', 'GSVIVG01017946001' => 'vvi', 'GSVIVG01024928001' => 'vvi', 'GSVIVG01028227001' => 'vvi', 'GSVIVG01034151001' => 'vvi', 'HanXRQChr05g0135031' => 'han', 'HanXRQChr05g0135041' => 'han', 'HanXRQChr05g0140021' => 'han', 'HanXRQChr06g0178981' => 'han', 'HanXRQChr07g0188251' => 'han', 'HanXRQChr08g0235311' => 'han', 'HanXRQChr09g0271011' => 'han', 'HanXRQChr10g0293321' => 'han', 'HanXRQChr13g0388171' => 'han', 'Haze_00916' => 'cav', 'Haze_05063' => 'cav', 'Haze_20814' => 'cav', 'Haze_24128' => 'cav', 'Hma1.2p1_0745F.1_g212010' => 'hma', 'Hma1.2p1_0757F.1_g213260' => 'hma', 'Hma1.2p1_0936F.1_g238840' => 'hma', 'Hma1.2p1_1735F.1_g299890' => 'hma', 'Hma1.2p1_1861F.1_g305685' => 'hma', 'HPP92_003397' => 'vpl', 'HPP92_012597' => 'vpl', 'HPP92_015520' => 'vpl', 'HPP92_015539' => 'vpl', 'HPP92_020373' => 'vpl', 'Hund04938' => 'sun', 'Hund10677' => 'sun', 'Hund11033' => 'sun', 'Hund12155' => 'sun', 'Lalb_Chr01g0022551' => 'lal', 'Lalb_Chr03g0042341' => 'lal', 'Lalb_Chr07g0192931' => 'lal', 'Lalb_Chr12g0209551' => 'lal', 'Lalb_Chr19g0125251' => 'lal', 'Lalb_Chr19g0137891' => 'lal', 'Lalb_Chr21g0304641' => 'lal', 'Lalb_Chr21g0309881' => 'lal', 'Lj1A5T12' => 'lonja', 'Lj1C148G10' => 'lonja', 'Lj2A93T83' => 'lonja', 'Lj3A738G68' => 'lonja', 'Lj3C966T1' => 'lonja', 'Lj3g0018958' => 'lja', 'Lj3g0021831' => 'lja', 'Lj3g0025443' => 'lja', 'Lj4g0026809' => 'lja', 'Lj5g0012558' => 'lja', 'Lj5g0021586' => 'lja', 'Lsat_1_v5_gn_5_156840' => 'lsa', 'Lsat_1_v5_gn_8_73460' => 'lsa', 'Lsat_1_v5_gn_8_73481' => 'lsa', 'Lsat_1_v5_gn_9_31601' => 'lsa', 'Lsat_1_v5_gn_9_77320' => 'lsa', 'Manes.01G171300' => 'mes', 'Manes.01G171400' => 'mes', 'Manes.01G236100' => 'mes', 'Manes.02G130500' => 'mes', 'Manes.02G130600' => 'mes', 'Manes.03G180200' => 'mes', 'Manes.05G007000' => 'mes', 'Manes.08G084400' => 'mes', 'Manes.09G092600' => 'mes', 'Manes.15G027900' => 'mes', 'MBI04_g40948_MAGBIO' => 'mbi', 'MBI14_g12123_MAGBIO' => 'mbi', 'MBI18_g28915_MAGBIO' => 'mbi', 'MCO09G053' => 'mco', 'MCO11G782' => 'mco', 'MCO15G215' => 'mco', 'MD03G1088500' => 'mdo', 'MD03G1088600' => 'mdo', 'MD04G1130800' => 'mdo', 'MD09G1291700' => 'mdo', 'MD11G1097500' => 'mdo', 'MD11G1097600' => 'mdo', 'MD12G1143900' => 'mdo', 'MD13G1191400' => 'mdo', 'MD16G1191500' => 'mdo', 'Medtr1g085570' => 'mtr', 'Medtr1g104610' => 'mtr', 'Medtr2g097520' => 'mtr', 'Medtr4g021800' => 'mtr', 'Medtr4g021825' => 'mtr', 'Medtr4g064270' => 'mtr', 'Medtr4g064380' => 'mtr', 'Medtr7g062150' => 'mtr', 'MELO3C003138.2' => 'cme', 'MELO3C005187.2' => 'cme', 'MELO3C009252.2' => 'cme', 'MELO3C014481.2' => 'cme', 'MELO3C020616.2' => 'cme', 'MELO3C020617.2' => 'cme', 'MELO3C020618.2' => 'cme', 'Migut.G00328' => 'egut', 'Migut.J00320' => 'egut', 'Migut.L01000' => 'egut', 'Migut.L01953' => 'egut', 'MSTRG.10253' => 'ama', 'MSTRG.19077' => 'ama', 'MSTRG.26780' => 'ama', 'MSTRG.4023' => 'ama', 'MSTRG.5655' => 'ama', 'MSTRG.9992' => 'ama', 'Nitab4.5_0000043g0310' => 'nta', 'Nitab4.5_0000463g0080' => 'nta', 'Nitab4.5_0000705g0170' => 'nta', 'Nitab4.5_0001326g0060' => 'nta', 'Nitab4.5_0001628g0030' => 'nta', 'Nitab4.5_0002103g0110' => 'nta', 'Nitab4.5_0002946g0030' => 'nta', 'Nitab4.5_0004639g0030' => 'nta', 'Nn2g11149' => 'nnu', 'Nn2g13389' => 'nnu', 'Nn4g25326' => 'nnu', 'Nn4g26290' => 'nnu', 'Nn5g29865' => 'nnu', 'Oeu004163.1' => 'oeu', 'Oeu006901.1' => 'oeu', 'Oeu010096.1' => 'oeu', 'Oeu024340.1' => 'oeu', 'Oeu048369.1' => 'oeu', 'Os01g0973000' => 'osa', 'Os03g0273800' => 'osa', 'Os03g0701200' => 'osa', 'Os03g0834050' => 'osa', 'Os07g0634400' => 'osa', 'Peaxi162Scf00092g01414' => 'pax', 'Peaxi162Scf00165g00818' => 'pax', 'Peaxi162Scf00309g00516' => 'pax', 'Peaxi162Scf00774g00218' => 'pax', 'PGR004G1824' => 'pgr', 'PGR004G2606' => 'pgr', 'PGR031G2716' => 'pgr', 'PGR102G2460' => 'pgr', 'PGR142G2599' => 'pgr', 'PGSC0003DMG400000843' => 'stu', 'PGSC0003DMG400008829' => 'stu', 'PGSC0003DMG400030418' => 'stu', 'PGSC0003DMG400031834' => 'stu', 'PGSC0003DMG401028300' => 'stu', 'PGSC0003DMG402028300' => 'stu', 'Phvul.001G219300' => 'pvu', 'Phvul.007G056000' => 'pvu', 'Phvul.007G208000' => 'pvu', 'Phvul.008G119500' => 'pvu', 'Phvul.010G011200' => 'pvu', 'Phvul.010G014800' => 'pvu', 'Phvul.011G062900' => 'pvu', 'Phvul.L007043' => 'pvu', 'Potri.001G242300' => 'ptr', 'Potri.002G185300' => 'ptr', 'Potri.006G086900' => 'ptr', 'Potri.008G151700' => 'ptr', 'Potri.009G033500' => 'ptr', 'Potri.010G089300' => 'ptr', 'Potri.014G110800' => 'ptr', 'Pp3c27_8130' => 'ppa', 'Pp3c6_27410' => 'ppa', 'PRCOL_00001659' => 'pco', 'PRCOL_00001927' => 'pco', 'PRCOL_00003649' => 'pco', 'Prupe.1G011600' => 'ppe', 'Prupe.3G000800' => 'ppe', 'Prupe.3G001100' => 'ppe', 'Prupe.6G072700' => 'ppe', 'Prupe.6G072800' => 'ppe', 'Prupe.6G257300' => 'ppe', 'Prupe.8G033000' => 'ppe', 'Psat0s2633g0080' => 'psa', 'Psat0s3396g0080' => 'psa', 'Psat0s3396g0200' => 'psa', 'Psat3g139080' => 'psa', 'Psat5g285080' => 'psa', 'Psat6g157760' => 'psa', 'Psat6g208440' => 'psa', 'Psat7g215320' => 'psa', 'Psat7g215400' => 'psa', 'Psat7g235600' => 'psa', 'Psat7g235760' => 'psa', 'PSO063G4603' => 'pso', 'PSO210G0182' => 'pso', 'PSO210G0196' => 'pso', 'PSO339G0394' => 'pso', 'PSO339G4127' => 'pso', 'PSO513G0064' => 'pso', 'PSO761G0079' => 'pso', 'QL01p031003' => 'qlo', 'QL01p031078' => 'qlo', 'QL06p003004' => 'qlo', 'QL07p048731' => 'qlo', 'QL09p037427' => 'qlo', 'RcHm_v2.0_Chr3g0466361' => 'rch', 'RcHm_v2.0_Chr3g0485571' => 'rch', 'RcHm_v2.0_Chr4g0416551' => 'rch', 'RcHm_v2.0_Chr5g0065831' => 'rch', 'Rhsim01G0230500' => 'rsi', 'Rhsim05G0194000' => 'rsi', 'Rhsim08G0250400' => 'rsi', 'Sabra02G0131000' => 'sbr', 'Sabra06G0066300' => 'sbr', 'Sabra08G0115500' => 'sbr', 'Sabra09G0023900' => 'sbr', 'Sabra10G0054000' => 'sbr', 'Sabra14G0081500' => 'sbr', 'Sabra16G0147100' => 'sbr', 'SalBow2G2957' => 'sbo', 'SalBow4G3320' => 'sbo', 'SalBow8G1894' => 'sbo', 'Sc07g0007950' => 'sci', 'Sc12g0001360' => 'sci', 'Sc13g0004330' => 'sci', 'Sc20g0005010' => 'sci', 'Sed0000361' => 'sed', 'Sed0001706' => 'sed', 'Sed0002422' => 'sed', 'Sed0004029' => 'sed', 'Sed0004602' => 'sed', 'Sed0004943' => 'sed', 'Sed0008646' => 'sed', 'Sed0023313' => 'sed', 'Sed0024843' => 'sed', 'SEGI_00081' => 'sgi', 'SEGI_00947' => 'sgi', 'SEGI_04046' => 'sgi', 'SEGI_06880' => 'sgi', 'SEGI_09736' => 'sgi', 'SEGI_12741' => 'sgi', 'SEGI_14530' => 'sgi', 'SEGI_20705' => 'sgi', 'SEGI_26088' => 'sgi', 'SEGI_28323' => 'sgi', 'SEGI_33343' => 'sgi', 'SGA_v2.0_scaffold126G33775' => 'sas', 'SGA_v2.0_scaffold2G01337' => 'sas', 'SGA_v2.0_scaffold38G15006' => 'sas', 'SGA_v2.0_scaffold39G15264' => 'sas', 'SGA_v2.0_scaffold453G51880' => 'sas', 'SHI12696' => 'shi', 'SMO367G1096' => 'smo', 'Solyc01g068630.3' => 'sly', 'Solyc05g011880.3' => 'sly', 'Solyc06g076300.3' => 'sly', 'Solyc09g010940.4' => 'sly', 'Solyc09g075890.3' => 'sly', 'Sopen01g030560' => 'spe', 'Sopen05g006630' => 'spe', 'Sopen06g032720' => 'spe', 'Sopen09g005660' => 'spe', 'Sopen09g030690' => 'spe', 'Sp4g14540' => 'spa', 'Sp4g20030' => 'spa', 'Sp5g01320' => 'spa', 'Sp6g21170' => 'spa', 'Sp6g21180' => 'spa', 'Sp6g21190' => 'spa', 'Sp6g40220' => 'spa', 'TAR362G0122' => 'tar', 'TAR362G1338' => 'tar', 'TAR369G0590' => 'tar', 'TAR371G0824' => 'tar', 'TAR622G1429' => 'tar', 'TAR623G0734' => 'tar', 'TAR625G0441' => 'tar', 'TAR629G0976' => 'tar', 'TAR633G1195' => 'tar', 'TAR636G2660' => 'tar', 'THA.LOC104799440' => 'tha', 'THA.LOC104800966' => 'tha', 'THA.LOC104806559' => 'tha', 'THA.LOC104810765' => 'tha', 'THA.LOC104816266' => 'tha', 'THA.LOC104817419' => 'tha', 'THA.LOC104827021' => 'tha', 'Thecc.01G327400' => 'tca', 'Thecc.04G229200' => 'tca', 'Thecc.05G037400' => 'tca', 'Thecc.09G318600' => 'tca', 'Thecc.09G318700' => 'tca', 'Thhalv10006238m.g' => 'esa', 'Thhalv10014321m.g' => 'esa', 'Thhalv10014335m.g' => 'esa', 'Thhalv10015826m.g' => 'esa', 'Thhalv10017107m.g' => 'esa', 'Thhalv10017180m.g' => 'esa', 'Thhalv10029339m.g' => 'esa', 'TPR.G1699' => 'tpr', 'TPR.G23609' => 'tpr', 'TPR.G3081' => 'tpr', 'TPR.G40397' => 'tpr', 'TPR.G5522' => 'tpr', 'TPR.G5618' => 'tpr', 'TPR.G5626' => 'tpr', 'TWI09G1632' => 'twi', 'TWI23G1230' => 'twi', 'TWI53G1064' => 'twi', 'TWI59G0751' => 'twi', 'TWI74G0947' => 'twi', 'TWI77G0337' => 'twi', 'TWI79G1254' => 'twi', 'unitig_0.g2341' => 'ugi', 'unitig_26.g10006' => 'ugi', 'unitig_26.g10008' => 'ugi', 'unitig_26.g9192' => 'ugi', 'vmacro14547' => 'vma', 'vmacro15333' => 'vma', 'vmacro18743' => 'vma', 'vmacro20166' => 'vma', 'VMungo0331G0523' => 'vmu', 'VMungo0331G1202' => 'vmu', 'VMungo0720G1228' => 'vmu', 'VMungo0720G1514' => 'vmu', 'VMungo1080G0169' => 'vmu', 'VMungo1127G1475' => 'vmu', 'VMungo1383G1208' => 'vmu', 'VMungo1383G1698' => 'vmu', 'Zm00001eb012270' => 'zma', 'Zm00001eb054100' => 'zma', 'Zm00001eb063350' => 'zma', 'Zm00001eb328560' => 'zma', 'Zm00001eb342820' => 'zma', 'Zm00001eb362210' => 'zma', 'Zm00001eb397730' => 'zma', 'Zm00001eb399750' => 'zma' ), 'gf_id' => 'HOM05D000959', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000959' ), 'data_identifier' => 'HOM05D000959', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000959', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '622', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p07100' => 'bna', 'A03p11720' => 'bna', 'A05p08300' => 'bna', 'A05p13380' => 'bna', 'A09p54130' => 'bna', 'A10p16690' => 'bna', 'A10p16700' => 'bna', 'A10p33390' => 'bna', 'Aa31LG10G16020' => 'aar', 'Aa31LG1G11810' => 'aar', 'Aa31LG1G11830' => 'aar', 'Aa31LG1G22510' => 'aar', 'Aa31LG5G4890' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5793' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2310' => 'aag', 'Actinidia08499' => 'ach', 'Actinidia11262' => 'ach', 'Actinidia23926' => 'ach', 'Actinidia34420' => 'ach', 'Actinidia36970' => 'ach', 'Ah.02g111220' => 'amhyb', 'Ah.15g097750' => 'amhyb', 'AL4G27500' => 'aly', 'AL6G11470' => 'aly', 'AL8G35950' => 'aly', 'AL8G35960' => 'aly', 'AL8G35970' => 'aly', 'Aqoxy1G00912' => 'aox', 'Aqoxy2G02253' => 'aox', 'Aqoxy2G02411' => 'aox', 'Aqoxy5G00485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BZ66YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K8ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM4FUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6BF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HFV7XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25JBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0YNNV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MAKK6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P70IT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP2Z6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V61LZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YWP64R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3S9AI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7PGHH' => 'arhy', 'AT2G32150' => 'ath', 'AT3G62040' => 'ath', 'AT5G02230' => 'ath', 'AT5G59480' => 'ath', 'AT5G59490' => 'ath', 'ATR0332G060' => 'atr', 'ATR0559G190' => 'atr', 'ATR0693G294' => 'atr', 'Atru.chr3.3975' => 'acertr', 'Atru.chr3.3976' => 'acertr', 'Atru.chr3.3977' => 'acertr', 'Atru.chr4.2498' => 'acertr', 'Atru.chr5.838' => 'acertr', 'Atru.chr8.1990' => 'acertr', 'Atru.chr8.1991' => 'acertr', 'Atru.chr8.1992' => 'acertr', 'AUR62001759' => 'cqu', 'AUR62009545' => 'cqu', 'AUR62010474' => 'cqu', 'AUR62025820' => 'cqu', 'AUR62030422' => 'cqu', 'AUR62033605' => 'cqu', 'AUR62038615' => 'cqu', 'AUR62041347' => 'cqu', 'BcaB01g04574' => 'bca', 'BcaB02g09263' => 'bca', 'BcaB02g10453' => 'bca', 'BcaB05g22513' => 'bca', 'BcaB08g36253' => 'bca', 'BcaB08g36254' => 'bca', 'BcaC01g06519' => 'bca', 'BcaC02g11889' => 'bca', 'BcaC03g14010' => 'bca', 'BcaC03g18439' => 'bca', 'BcaC04g19765' => 'bca', 'BcaC09g48432' => 'bca', 'BcaNung07302' => 'bca', 'BolC2t06040H' => 'bol', 'BolC2t07346H' => 'bol', 'BolC3t13817H' => 'bol', 'BolC4t22625H' => 'bol', 'BolC4t23297H' => 'bol', 'BolC8t51278H' => 'bol', 'BolC9t58050H' => 'bol', 'BolC9t58051H' => 'bol', 'BolC9t60163H' => 'bol', 'BraA02t04712Z' => 'bra', 'BraA02t05791Z' => 'bra', 'BraA03t10483Z' => 'bra', 'BraA05t19795Z' => 'bra', 'BraA05t20276Z' => 'bra', 'BraA09t40827Z' => 'bra', 'BraA10t43750Z' => 'bra', 'BraA10t43751Z' => 'bra', 'BraA10t45370Z' => 'bra', 'C02p00400' => 'bna', 'C02p12460' => 'bna', 'C03p13680' => 'bna', 'C04p10270' => 'bna', 'C04p17500' => 'bna', 'C08p37010' => 'bna', 'C09p51880' => 'bna', 'C09p51890' => 'bna', 'C09p74300' => 'bna', 'CAN.G179.26' => 'can', 'CAN.G3384.1' => 'can', 'CAN.G394.68' => 'can', 'CAN.G907.13' => 'can', 'CANSAT11G0012' => 'cansat', 'CANSAT25G1586' => 'cansat', 'CANSAT35G0735' => 'cansat', 'CANSAT54G0556' => 'cansat', 'CANSAT64G0356' => 'cansat', 'CANSAT78G2042' => 'cansat', 'CARHR125920' => 'chi', 'CARHR131910' => 'chi', 'CARHR172390' => 'chi', 'CARHR211140' => 'chi', 'CARHR285850' => 'chi', 'CARHR285860' => 'chi', 'Carub.0004s1347' => 'cru', 'Carub.0004s1960' => 'cru', 'Carub.0005s2880' => 'cru', 'Carub.0006s0107' => 'cru', 'Carub.0008s2015' => 'cru', 'Carub.0008s2016' => 'cru', 'Carub.0008s2017' => 'cru', 'Ca_01315_v3' => 'car', 'Ca_05063_v3' => 'car', 'Ca_10231_v3' => 'car', 'Ca_10913_v3' => 'car', 'Ca_19156_v3' => 'car', 'Ca_23644_v3' => 'car', 'Ca_26735_v3' => 'car', 'Cc01_g13130' => 'ccan', 'Cc02_g21690' => 'ccan', 'Cc03_g03600' => 'ccan', 'Cc06_g02510' => 'ccan', 'CDE02G1265' => 'cde', 'CDE05G0415' => 'cde', 'CDE08G1082' => 'cde', 'Cfa005780' => 'cfa', 'Cfa011522' => 'cfa', 'Cfa011523' => 'cfa', 'Cfa015627' => 'cfa', 'Cfa017359' => 'cfa', 'Ciclev10005687m.g' => 'ccl', 'Ciclev10012173m.g' => 'ccl', 'Ciclev10021621m.g' => 'ccl', 'Ciclev10028968m.g' => 'ccl', 'Ciclev10029907m.g' => 'ccl', 'CiPaw.01G164800' => 'cil', 'CiPaw.07G083700' => 'cil', 'CiPaw.07G127000' => 'cil', 'CiPaw.07G136900' => 'cil', 'CiPaw.08G081700' => 'cil', 'CiPaw.09G194600' => 'cil', 'CiPaw.10G146500' => 'cil', 'CiPaw.13G091500' => 'cil', 'CiPaw.13G091600' => 'cil', 'ClCG00G003390' => 'cla', 'ClCG01G007220' => 'cla', 'ClCG03G001370' => 'cla', 'ClCG04G008100' => 'cla', 'ClCG06G006110' => 'cla', 'ClCG06G006130' => 'cla', 'ClCG10G021210' => 'cla', 'COL.COLO4_07648' => 'col', 'COL.COLO4_07650' => 'col', 'COL.COLO4_07651' => 'col', 'COL.COLO4_14780' => 'col', 'COL.COLO4_18546' => 'col', 'COL.COLO4_18547' => 'col', 'COL.COLO4_23103' => 'col', 'COL.COLO4_30419' => 'col', 'COL.COLO4_34232' => 'col', 'Cpa.g.sc169.20' => 'cpa', 'Cpa.g.sc57.45' => 'cpa', 'Cpa.g.sc58.124' => 'cpa', 'Cpa.g.sc58.125' => 'cpa', 'Cpa.g.sc81.118' => 'cpa', 'Cpa.g.sc81.119' => 'cpa', 'Cre12.g524700' => 'cre', 'CsaV3_1G034430' => 'csa', 'CsaV3_1G034440' => 'csa', 'CsaV3_1G034450' => 'csa', 'CsaV3_3G034830' => 'csa', 'CsaV3_4G025090' => 'csa', 'CsaV3_5G018660' => 'csa', 'CsaV3_6G038160' => 'csa', 'CSS0003447' => 'camsi', 'CSS0017840' => 'camsi', 'CSS0019260' => 'camsi', 'CSS0040375' => 'camsi', 'CSS0042533' => 'camsi', 'DCAR_005960' => 'dca', 'DCAR_012104' => 'dca', 'DCAR_012105' => 'dca', 'DCAR_012293' => 'dca', 'DCAR_015632' => 'dca', 'DCAR_024602' => 'dca', 'DCAR_028752' => 'dca', 'Dinv06261' => 'din', 'Dinv13982' => 'din', 'Dinv17029' => 'din', 'Dinv18463' => 'din', 'Dinv33181' => 'din', 'Dinv35585' => 'din', 'Dinv37161' => 'din', 'Dinv42977' => 'din', 'Dinv43122' => 'din', 'Dinv44517' => 'din', 'Duzib093G0256' => 'dzi', 'Duzib106G1254' => 'dzi', 'Duzib128G1789' => 'dzi', 'Duzib133G0633' => 'dzi', 'Duzib138G0510' => 'dzi', 'Duzib150G1084' => 'dzi', 'Duzib168G0488' => 'dzi', 'Duzib168G1523' => 'dzi', 'Duzib170G0133' => 'dzi', 'ECA234G1433' => 'eca', 'ECA236G1432' => 'eca', 'ECA236G2256' => 'eca', 'ECA236G2365' => 'eca', 'ECA236G4830' => 'eca', 'ECA248G1505' => 'eca', 'EL10Ac3g06431' => 'bvu', 'EL10Ac5g12577' => 'bvu', 'EL10Ac6g13533' => 'bvu', 'EL10Ac7g16045' => 'bvu', 'Eucgr.A01281' => 'egr', 'Eucgr.B02326' => 'egr', 'Eucgr.H03532' => 'egr', 'Eucgr.K00553' => 'egr', 'Eucgr.K03116' => 'egr', 'FAN02G3963' => 'fan', 'FAN05G0438' => 'fan', 'FAN09G2434' => 'fan', 'FAN12G3984' => 'fan', 'FAN14G0798' => 'fan', 'FAN17G0652' => 'fan', 'FAN19G1988' => 'fan', 'FAN22G0632' => 'fan', 'FAN23G0387' => 'fan', 'FAN26G1323' => 'fan', 'FAN28G0666' => 'fan', 'FvH4_1g26080' => 'fve', 'FvH4_3g36780' => 'fve', 'FvH4_4g15270' => 'fve', 'FvH4_6g13490' => 'fve', 'Glyma.01G098700' => 'gma', 'Glyma.03G065900' => 'gma', 'Glyma.03G073754' => 'gma', 'Glyma.03G073758' => 'gma', 'Glyma.03G083200' => 'gma', 'Glyma.03G225500' => 'gma', 'Glyma.05G037766' => 'gma', 'Glyma.07G133500' => 'gma', 'Glyma.10G139400' => 'gma', 'Glyma.10G248900' => 'gma', 'Glyma.11G137800' => 'gma', 'Glyma.12G061300' => 'gma', 'Glyma.13G337900' => 'gma', 'Glyma.15G036600' => 'gma', 'Glyma.18G182800' => 'gma', 'Glyma.19G222500' => 'gma', 'Glyma.20G144800' => 'gma', 'Gohir.A01G222000' => 'ghi', 'Gohir.A03G044000' => 'ghi', 'Gohir.A03G044100' => 'ghi', 'Gohir.A04G083100' => 'ghi', 'Gohir.A07G127200' => 'ghi', 'Gohir.A07G132400' => 'ghi', 'Gohir.A08G000700' => 'ghi', 'Gohir.A11G327300' => 'ghi', 'Gohir.D01G211500' => 'ghi', 'Gohir.D03G123400' => 'ghi', 'Gohir.D03G123500' => 'ghi', 'Gohir.D04G121800' => 'ghi', 'Gohir.D07G131500' => 'ghi', 'Gohir.D07G136600' => 'ghi', 'Gohir.D08G011600' => 'ghi', 'Gohir.D11G346200' => 'ghi', 'Gorai.001G142800' => 'gra', 'Gorai.001G148700' => 'gra', 'Gorai.002G257300' => 'gra', 'Gorai.003G130000' => 'gra', 'Gorai.003G130100' => 'gra', 'Gorai.004G005300' => 'gra', 'Gorai.007G376500' => 'gra', 'Gorai.012G104700' => 'gra', 'GSVIVG01017946001' => 'vvi', 'GSVIVG01024928001' => 'vvi', 'GSVIVG01028227001' => 'vvi', 'GSVIVG01034151001' => 'vvi', 'HanXRQChr05g0135031' => 'han', 'HanXRQChr05g0135041' => 'han', 'HanXRQChr05g0140021' => 'han', 'HanXRQChr06g0178981' => 'han', 'HanXRQChr07g0188251' => 'han', 'HanXRQChr08g0235311' => 'han', 'HanXRQChr09g0271011' => 'han', 'HanXRQChr10g0293321' => 'han', 'HanXRQChr13g0388171' => 'han', 'Haze_00916' => 'cav', 'Haze_05063' => 'cav', 'Haze_20814' => 'cav', 'Haze_24128' => 'cav', 'Hma1.2p1_0745F.1_g212010' => 'hma', 'Hma1.2p1_0757F.1_g213260' => 'hma', 'Hma1.2p1_0936F.1_g238840' => 'hma', 'Hma1.2p1_1735F.1_g299890' => 'hma', 'Hma1.2p1_1861F.1_g305685' => 'hma', 'HPP92_003397' => 'vpl', 'HPP92_012597' => 'vpl', 'HPP92_015520' => 'vpl', 'HPP92_015539' => 'vpl', 'HPP92_020373' => 'vpl', 'Hund04938' => 'sun', 'Hund10677' => 'sun', 'Hund11033' => 'sun', 'Hund12155' => 'sun', 'Lalb_Chr01g0022551' => 'lal', 'Lalb_Chr03g0042341' => 'lal', 'Lalb_Chr07g0192931' => 'lal', 'Lalb_Chr12g0209551' => 'lal', 'Lalb_Chr19g0125251' => 'lal', 'Lalb_Chr19g0137891' => 'lal', 'Lalb_Chr21g0304641' => 'lal', 'Lalb_Chr21g0309881' => 'lal', 'Lj1A5T12' => 'lonja', 'Lj1C148G10' => 'lonja', 'Lj2A93T83' => 'lonja', 'Lj3A738G68' => 'lonja', 'Lj3C966T1' => 'lonja', 'Lj3g0018958' => 'lja', 'Lj3g0021831' => 'lja', 'Lj3g0025443' => 'lja', 'Lj4g0026809' => 'lja', 'Lj5g0012558' => 'lja', 'Lj5g0021586' => 'lja', 'Lsat_1_v5_gn_5_156840' => 'lsa', 'Lsat_1_v5_gn_8_73460' => 'lsa', 'Lsat_1_v5_gn_8_73481' => 'lsa', 'Lsat_1_v5_gn_9_31601' => 'lsa', 'Lsat_1_v5_gn_9_77320' => 'lsa', 'Manes.01G171300' => 'mes', 'Manes.01G171400' => 'mes', 'Manes.01G236100' => 'mes', 'Manes.02G130500' => 'mes', 'Manes.02G130600' => 'mes', 'Manes.03G180200' => 'mes', 'Manes.05G007000' => 'mes', 'Manes.08G084400' => 'mes', 'Manes.09G092600' => 'mes', 'Manes.15G027900' => 'mes', 'MBI04_g40948_MAGBIO' => 'mbi', 'MBI14_g12123_MAGBIO' => 'mbi', 'MBI18_g28915_MAGBIO' => 'mbi', 'MCO09G053' => 'mco', 'MCO11G782' => 'mco', 'MCO15G215' => 'mco', 'MD03G1088500' => 'mdo', 'MD03G1088600' => 'mdo', 'MD04G1130800' => 'mdo', 'MD09G1291700' => 'mdo', 'MD11G1097500' => 'mdo', 'MD11G1097600' => 'mdo', 'MD12G1143900' => 'mdo', 'MD13G1191400' => 'mdo', 'MD16G1191500' => 'mdo', 'Medtr1g085570' => 'mtr', 'Medtr1g104610' => 'mtr', 'Medtr2g097520' => 'mtr', 'Medtr4g021800' => 'mtr', 'Medtr4g021825' => 'mtr', 'Medtr4g064270' => 'mtr', 'Medtr4g064380' => 'mtr', 'Medtr7g062150' => 'mtr', 'MELO3C003138.2' => 'cme', 'MELO3C005187.2' => 'cme', 'MELO3C009252.2' => 'cme', 'MELO3C014481.2' => 'cme', 'MELO3C020616.2' => 'cme', 'MELO3C020617.2' => 'cme', 'MELO3C020618.2' => 'cme', 'Migut.G00328' => 'egut', 'Migut.J00320' => 'egut', 'Migut.L01000' => 'egut', 'Migut.L01953' => 'egut', 'MSTRG.10253' => 'ama', 'MSTRG.19077' => 'ama', 'MSTRG.26780' => 'ama', 'MSTRG.4023' => 'ama', 'MSTRG.5655' => 'ama', 'MSTRG.9992' => 'ama', 'Nitab4.5_0000043g0310' => 'nta', 'Nitab4.5_0000463g0080' => 'nta', 'Nitab4.5_0000705g0170' => 'nta', 'Nitab4.5_0001326g0060' => 'nta', 'Nitab4.5_0001628g0030' => 'nta', 'Nitab4.5_0002103g0110' => 'nta', 'Nitab4.5_0002946g0030' => 'nta', 'Nitab4.5_0004639g0030' => 'nta', 'Nn2g11149' => 'nnu', 'Nn2g13389' => 'nnu', 'Nn4g25326' => 'nnu', 'Nn4g26290' => 'nnu', 'Nn5g29865' => 'nnu', 'Oeu004163.1' => 'oeu', 'Oeu006901.1' => 'oeu', 'Oeu010096.1' => 'oeu', 'Oeu024340.1' => 'oeu', 'Oeu048369.1' => 'oeu', 'Os01g0973000' => 'osa', 'Os03g0273800' => 'osa', 'Os03g0701200' => 'osa', 'Os03g0834050' => 'osa', 'Os07g0634400' => 'osa', 'Peaxi162Scf00092g01414' => 'pax', 'Peaxi162Scf00165g00818' => 'pax', 'Peaxi162Scf00309g00516' => 'pax', 'Peaxi162Scf00774g00218' => 'pax', 'PGR004G1824' => 'pgr', 'PGR004G2606' => 'pgr', 'PGR031G2716' => 'pgr', 'PGR102G2460' => 'pgr', 'PGR142G2599' => 'pgr', 'PGSC0003DMG400000843' => 'stu', 'PGSC0003DMG400008829' => 'stu', 'PGSC0003DMG400030418' => 'stu', 'PGSC0003DMG400031834' => 'stu', 'PGSC0003DMG401028300' => 'stu', 'PGSC0003DMG402028300' => 'stu', 'Phvul.001G219300' => 'pvu', 'Phvul.007G056000' => 'pvu', 'Phvul.007G208000' => 'pvu', 'Phvul.008G119500' => 'pvu', 'Phvul.010G011200' => 'pvu', 'Phvul.010G014800' => 'pvu', 'Phvul.011G062900' => 'pvu', 'Phvul.L007043' => 'pvu', 'Potri.001G242300' => 'ptr', 'Potri.002G185300' => 'ptr', 'Potri.006G086900' => 'ptr', 'Potri.008G151700' => 'ptr', 'Potri.009G033500' => 'ptr', 'Potri.010G089300' => 'ptr', 'Potri.014G110800' => 'ptr', 'Pp3c27_8130' => 'ppa', 'Pp3c6_27410' => 'ppa', 'PRCOL_00001659' => 'pco', 'PRCOL_00001927' => 'pco', 'PRCOL_00003649' => 'pco', 'Prupe.1G011600' => 'ppe', 'Prupe.3G000800' => 'ppe', 'Prupe.3G001100' => 'ppe', 'Prupe.6G072700' => 'ppe', 'Prupe.6G072800' => 'ppe', 'Prupe.6G257300' => 'ppe', 'Prupe.8G033000' => 'ppe', 'Psat0s2633g0080' => 'psa', 'Psat0s3396g0080' => 'psa', 'Psat0s3396g0200' => 'psa', 'Psat3g139080' => 'psa', 'Psat5g285080' => 'psa', 'Psat6g157760' => 'psa', 'Psat6g208440' => 'psa', 'Psat7g215320' => 'psa', 'Psat7g215400' => 'psa', 'Psat7g235600' => 'psa', 'Psat7g235760' => 'psa', 'PSO063G4603' => 'pso', 'PSO210G0182' => 'pso', 'PSO210G0196' => 'pso', 'PSO339G0394' => 'pso', 'PSO339G4127' => 'pso', 'PSO513G0064' => 'pso', 'PSO761G0079' => 'pso', 'QL01p031003' => 'qlo', 'QL01p031078' => 'qlo', 'QL06p003004' => 'qlo', 'QL07p048731' => 'qlo', 'QL09p037427' => 'qlo', 'RcHm_v2.0_Chr3g0466361' => 'rch', 'RcHm_v2.0_Chr3g0485571' => 'rch', 'RcHm_v2.0_Chr4g0416551' => 'rch', 'RcHm_v2.0_Chr5g0065831' => 'rch', 'Rhsim01G0230500' => 'rsi', 'Rhsim05G0194000' => 'rsi', 'Rhsim08G0250400' => 'rsi', 'Sabra02G0131000' => 'sbr', 'Sabra06G0066300' => 'sbr', 'Sabra08G0115500' => 'sbr', 'Sabra09G0023900' => 'sbr', 'Sabra10G0054000' => 'sbr', 'Sabra14G0081500' => 'sbr', 'Sabra16G0147100' => 'sbr', 'SalBow2G2957' => 'sbo', 'SalBow4G3320' => 'sbo', 'SalBow8G1894' => 'sbo', 'Sc07g0007950' => 'sci', 'Sc12g0001360' => 'sci', 'Sc13g0004330' => 'sci', 'Sc20g0005010' => 'sci', 'Sed0000361' => 'sed', 'Sed0001706' => 'sed', 'Sed0002422' => 'sed', 'Sed0004029' => 'sed', 'Sed0004602' => 'sed', 'Sed0004943' => 'sed', 'Sed0008646' => 'sed', 'Sed0023313' => 'sed', 'Sed0024843' => 'sed', 'SEGI_00081' => 'sgi', 'SEGI_00947' => 'sgi', 'SEGI_04046' => 'sgi', 'SEGI_06880' => 'sgi', 'SEGI_09736' => 'sgi', 'SEGI_12741' => 'sgi', 'SEGI_14530' => 'sgi', 'SEGI_20705' => 'sgi', 'SEGI_26088' => 'sgi', 'SEGI_28323' => 'sgi', 'SEGI_33343' => 'sgi', 'SGA_v2.0_scaffold126G33775' => 'sas', 'SGA_v2.0_scaffold2G01337' => 'sas', 'SGA_v2.0_scaffold38G15006' => 'sas', 'SGA_v2.0_scaffold39G15264' => 'sas', 'SGA_v2.0_scaffold453G51880' => 'sas', 'SHI12696' => 'shi', 'SMO367G1096' => 'smo', 'Solyc01g068630.3' => 'sly', 'Solyc05g011880.3' => 'sly', 'Solyc06g076300.3' => 'sly', 'Solyc09g010940.4' => 'sly', 'Solyc09g075890.3' => 'sly', 'Sopen01g030560' => 'spe', 'Sopen05g006630' => 'spe', 'Sopen06g032720' => 'spe', 'Sopen09g005660' => 'spe', 'Sopen09g030690' => 'spe', 'Sp4g14540' => 'spa', 'Sp4g20030' => 'spa', 'Sp5g01320' => 'spa', 'Sp6g21170' => 'spa', 'Sp6g21180' => 'spa', 'Sp6g21190' => 'spa', 'Sp6g40220' => 'spa', 'TAR362G0122' => 'tar', 'TAR362G1338' => 'tar', 'TAR369G0590' => 'tar', 'TAR371G0824' => 'tar', 'TAR622G1429' => 'tar', 'TAR623G0734' => 'tar', 'TAR625G0441' => 'tar', 'TAR629G0976' => 'tar', 'TAR633G1195' => 'tar', 'TAR636G2660' => 'tar', 'THA.LOC104799440' => 'tha', 'THA.LOC104800966' => 'tha', 'THA.LOC104806559' => 'tha', 'THA.LOC104810765' => 'tha', 'THA.LOC104816266' => 'tha', 'THA.LOC104817419' => 'tha', 'THA.LOC104827021' => 'tha', 'Thecc.01G327400' => 'tca', 'Thecc.04G229200' => 'tca', 'Thecc.05G037400' => 'tca', 'Thecc.09G318600' => 'tca', 'Thecc.09G318700' => 'tca', 'Thhalv10006238m.g' => 'esa', 'Thhalv10014321m.g' => 'esa', 'Thhalv10014335m.g' => 'esa', 'Thhalv10015826m.g' => 'esa', 'Thhalv10017107m.g' => 'esa', 'Thhalv10017180m.g' => 'esa', 'Thhalv10029339m.g' => 'esa', 'TPR.G1699' => 'tpr', 'TPR.G23609' => 'tpr', 'TPR.G3081' => 'tpr', 'TPR.G40397' => 'tpr', 'TPR.G5522' => 'tpr', 'TPR.G5618' => 'tpr', 'TPR.G5626' => 'tpr', 'TWI09G1632' => 'twi', 'TWI23G1230' => 'twi', 'TWI53G1064' => 'twi', 'TWI59G0751' => 'twi', 'TWI74G0947' => 'twi', 'TWI77G0337' => 'twi', 'TWI79G1254' => 'twi', 'unitig_0.g2341' => 'ugi', 'unitig_26.g10006' => 'ugi', 'unitig_26.g10008' => 'ugi', 'unitig_26.g9192' => 'ugi', 'vmacro14547' => 'vma', 'vmacro15333' => 'vma', 'vmacro18743' => 'vma', 'vmacro20166' => 'vma', 'VMungo0331G0523' => 'vmu', 'VMungo0331G1202' => 'vmu', 'VMungo0720G1228' => 'vmu', 'VMungo0720G1514' => 'vmu', 'VMungo1080G0169' => 'vmu', 'VMungo1127G1475' => 'vmu', 'VMungo1383G1208' => 'vmu', 'VMungo1383G1698' => 'vmu', 'Zm00001eb012270' => 'zma', 'Zm00001eb054100' => 'zma', 'Zm00001eb063350' => 'zma', 'Zm00001eb328560' => 'zma', 'Zm00001eb342820' => 'zma', 'Zm00001eb362210' => 'zma', 'Zm00001eb397730' => 'zma', 'Zm00001eb399750' => 'zma' ) $gf_id = 'HOM05D000959' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000959' ) $data_identifier = 'HOM05D000959' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 5, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 5, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 10, 'mbi' => (int) 3, 'mco' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 2, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 3, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 11, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399750' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000959', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '622', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p07100' => 'bna', 'A03p11720' => 'bna', 'A05p08300' => 'bna', 'A05p13380' => 'bna', 'A09p54130' => 'bna', 'A10p16690' => 'bna', 'A10p16700' => 'bna', 'A10p33390' => 'bna', 'Aa31LG10G16020' => 'aar', 'Aa31LG1G11810' => 'aar', 'Aa31LG1G11830' => 'aar', 'Aa31LG1G22510' => 'aar', 'Aa31LG5G4890' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5793' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2310' => 'aag', 'Actinidia08499' => 'ach', 'Actinidia11262' => 'ach', 'Actinidia23926' => 'ach', 'Actinidia34420' => 'ach', 'Actinidia36970' => 'ach', 'Ah.02g111220' => 'amhyb', 'Ah.15g097750' => 'amhyb', 'AL4G27500' => 'aly', 'AL6G11470' => 'aly', 'AL8G35950' => 'aly', 'AL8G35960' => 'aly', 'AL8G35970' => 'aly', 'Aqoxy1G00912' => 'aox', 'Aqoxy2G02253' => 'aox', 'Aqoxy2G02411' => 'aox', 'Aqoxy5G00485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BZ66YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K8ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM4FUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6BF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HFV7XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25JBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0YNNV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MAKK6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P70IT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP2Z6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V61LZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YWP64R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3S9AI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7PGHH' => 'arhy', 'AT2G32150' => 'ath', 'AT3G62040' => 'ath', 'AT5G02230' => 'ath', 'AT5G59480' => 'ath', 'AT5G59490' => 'ath', 'ATR0332G060' => 'atr', 'ATR0559G190' => 'atr', 'ATR0693G294' => 'atr', 'Atru.chr3.3975' => 'acertr', 'Atru.chr3.3976' => 'acertr', 'Atru.chr3.3977' => 'acertr', 'Atru.chr4.2498' => 'acertr', 'Atru.chr5.838' => 'acertr', 'Atru.chr8.1990' => 'acertr', 'Atru.chr8.1991' => 'acertr', 'Atru.chr8.1992' => 'acertr', 'AUR62001759' => 'cqu', 'AUR62009545' => 'cqu', 'AUR62010474' => 'cqu', 'AUR62025820' => 'cqu', 'AUR62030422' => 'cqu', 'AUR62033605' => 'cqu', 'AUR62038615' => 'cqu', 'AUR62041347' => 'cqu', 'BcaB01g04574' => 'bca', 'BcaB02g09263' => 'bca', 'BcaB02g10453' => 'bca', 'BcaB05g22513' => 'bca', 'BcaB08g36253' => 'bca', 'BcaB08g36254' => 'bca', 'BcaC01g06519' => 'bca', 'BcaC02g11889' => 'bca', 'BcaC03g14010' => 'bca', 'BcaC03g18439' => 'bca', 'BcaC04g19765' => 'bca', 'BcaC09g48432' => 'bca', 'BcaNung07302' => 'bca', 'BolC2t06040H' => 'bol', 'BolC2t07346H' => 'bol', 'BolC3t13817H' => 'bol', 'BolC4t22625H' => 'bol', 'BolC4t23297H' => 'bol', 'BolC8t51278H' => 'bol', 'BolC9t58050H' => 'bol', 'BolC9t58051H' => 'bol', 'BolC9t60163H' => 'bol', 'BraA02t04712Z' => 'bra', 'BraA02t05791Z' => 'bra', 'BraA03t10483Z' => 'bra', 'BraA05t19795Z' => 'bra', 'BraA05t20276Z' => 'bra', 'BraA09t40827Z' => 'bra', 'BraA10t43750Z' => 'bra', 'BraA10t43751Z' => 'bra', 'BraA10t45370Z' => 'bra', 'C02p00400' => 'bna', 'C02p12460' => 'bna', 'C03p13680' => 'bna', 'C04p10270' => 'bna', 'C04p17500' => 'bna', 'C08p37010' => 'bna', 'C09p51880' => 'bna', 'C09p51890' => 'bna', 'C09p74300' => 'bna', 'CAN.G179.26' => 'can', 'CAN.G3384.1' => 'can', 'CAN.G394.68' => 'can', 'CAN.G907.13' => 'can', 'CANSAT11G0012' => 'cansat', 'CANSAT25G1586' => 'cansat', 'CANSAT35G0735' => 'cansat', 'CANSAT54G0556' => 'cansat', 'CANSAT64G0356' => 'cansat', 'CANSAT78G2042' => 'cansat', 'CARHR125920' => 'chi', 'CARHR131910' => 'chi', 'CARHR172390' => 'chi', 'CARHR211140' => 'chi', 'CARHR285850' => 'chi', 'CARHR285860' => 'chi', 'Carub.0004s1347' => 'cru', 'Carub.0004s1960' => 'cru', 'Carub.0005s2880' => 'cru', 'Carub.0006s0107' => 'cru', 'Carub.0008s2015' => 'cru', 'Carub.0008s2016' => 'cru', 'Carub.0008s2017' => 'cru', 'Ca_01315_v3' => 'car', 'Ca_05063_v3' => 'car', 'Ca_10231_v3' => 'car', 'Ca_10913_v3' => 'car', 'Ca_19156_v3' => 'car', 'Ca_23644_v3' => 'car', 'Ca_26735_v3' => 'car', 'Cc01_g13130' => 'ccan', 'Cc02_g21690' => 'ccan', 'Cc03_g03600' => 'ccan', 'Cc06_g02510' => 'ccan', 'CDE02G1265' => 'cde', 'CDE05G0415' => 'cde', 'CDE08G1082' => 'cde', 'Cfa005780' => 'cfa', 'Cfa011522' => 'cfa', 'Cfa011523' => 'cfa', 'Cfa015627' => 'cfa', 'Cfa017359' => 'cfa', 'Ciclev10005687m.g' => 'ccl', 'Ciclev10012173m.g' => 'ccl', 'Ciclev10021621m.g' => 'ccl', 'Ciclev10028968m.g' => 'ccl', 'Ciclev10029907m.g' => 'ccl', 'CiPaw.01G164800' => 'cil', 'CiPaw.07G083700' => 'cil', 'CiPaw.07G127000' => 'cil', 'CiPaw.07G136900' => 'cil', 'CiPaw.08G081700' => 'cil', 'CiPaw.09G194600' => 'cil', 'CiPaw.10G146500' => 'cil', 'CiPaw.13G091500' => 'cil', 'CiPaw.13G091600' => 'cil', 'ClCG00G003390' => 'cla', 'ClCG01G007220' => 'cla', 'ClCG03G001370' => 'cla', 'ClCG04G008100' => 'cla', 'ClCG06G006110' => 'cla', 'ClCG06G006130' => 'cla', 'ClCG10G021210' => 'cla', 'COL.COLO4_07648' => 'col', 'COL.COLO4_07650' => 'col', 'COL.COLO4_07651' => 'col', 'COL.COLO4_14780' => 'col', 'COL.COLO4_18546' => 'col', 'COL.COLO4_18547' => 'col', 'COL.COLO4_23103' => 'col', 'COL.COLO4_30419' => 'col', 'COL.COLO4_34232' => 'col', 'Cpa.g.sc169.20' => 'cpa', 'Cpa.g.sc57.45' => 'cpa', 'Cpa.g.sc58.124' => 'cpa', 'Cpa.g.sc58.125' => 'cpa', 'Cpa.g.sc81.118' => 'cpa', 'Cpa.g.sc81.119' => 'cpa', 'Cre12.g524700' => 'cre', 'CsaV3_1G034430' => 'csa', 'CsaV3_1G034440' => 'csa', 'CsaV3_1G034450' => 'csa', 'CsaV3_3G034830' => 'csa', 'CsaV3_4G025090' => 'csa', 'CsaV3_5G018660' => 'csa', 'CsaV3_6G038160' => 'csa', 'CSS0003447' => 'camsi', 'CSS0017840' => 'camsi', 'CSS0019260' => 'camsi', 'CSS0040375' => 'camsi', 'CSS0042533' => 'camsi', 'DCAR_005960' => 'dca', 'DCAR_012104' => 'dca', 'DCAR_012105' => 'dca', 'DCAR_012293' => 'dca', 'DCAR_015632' => 'dca', 'DCAR_024602' => 'dca', 'DCAR_028752' => 'dca', 'Dinv06261' => 'din', 'Dinv13982' => 'din', 'Dinv17029' => 'din', 'Dinv18463' => 'din', 'Dinv33181' => 'din', 'Dinv35585' => 'din', 'Dinv37161' => 'din', 'Dinv42977' => 'din', 'Dinv43122' => 'din', 'Dinv44517' => 'din', 'Duzib093G0256' => 'dzi', 'Duzib106G1254' => 'dzi', 'Duzib128G1789' => 'dzi', 'Duzib133G0633' => 'dzi', 'Duzib138G0510' => 'dzi', 'Duzib150G1084' => 'dzi', 'Duzib168G0488' => 'dzi', 'Duzib168G1523' => 'dzi', 'Duzib170G0133' => 'dzi', 'ECA234G1433' => 'eca', 'ECA236G1432' => 'eca', 'ECA236G2256' => 'eca', 'ECA236G2365' => 'eca', 'ECA236G4830' => 'eca', 'ECA248G1505' => 'eca', 'EL10Ac3g06431' => 'bvu', 'EL10Ac5g12577' => 'bvu', 'EL10Ac6g13533' => 'bvu', 'EL10Ac7g16045' => 'bvu', 'Eucgr.A01281' => 'egr', 'Eucgr.B02326' => 'egr', 'Eucgr.H03532' => 'egr', 'Eucgr.K00553' => 'egr', 'Eucgr.K03116' => 'egr', 'FAN02G3963' => 'fan', 'FAN05G0438' => 'fan', 'FAN09G2434' => 'fan', 'FAN12G3984' => 'fan', 'FAN14G0798' => 'fan', 'FAN17G0652' => 'fan', 'FAN19G1988' => 'fan', 'FAN22G0632' => 'fan', 'FAN23G0387' => 'fan', 'FAN26G1323' => 'fan', 'FAN28G0666' => 'fan', 'FvH4_1g26080' => 'fve', 'FvH4_3g36780' => 'fve', 'FvH4_4g15270' => 'fve', 'FvH4_6g13490' => 'fve', 'Glyma.01G098700' => 'gma', 'Glyma.03G065900' => 'gma', 'Glyma.03G073754' => 'gma', 'Glyma.03G073758' => 'gma', 'Glyma.03G083200' => 'gma', 'Glyma.03G225500' => 'gma', 'Glyma.05G037766' => 'gma', 'Glyma.07G133500' => 'gma', 'Glyma.10G139400' => 'gma', 'Glyma.10G248900' => 'gma', 'Glyma.11G137800' => 'gma', 'Glyma.12G061300' => 'gma', 'Glyma.13G337900' => 'gma', 'Glyma.15G036600' => 'gma', 'Glyma.18G182800' => 'gma', 'Glyma.19G222500' => 'gma', 'Glyma.20G144800' => 'gma', 'Gohir.A01G222000' => 'ghi', 'Gohir.A03G044000' => 'ghi', 'Gohir.A03G044100' => 'ghi', 'Gohir.A04G083100' => 'ghi', 'Gohir.A07G127200' => 'ghi', 'Gohir.A07G132400' => 'ghi', 'Gohir.A08G000700' => 'ghi', 'Gohir.A11G327300' => 'ghi', 'Gohir.D01G211500' => 'ghi', 'Gohir.D03G123400' => 'ghi', 'Gohir.D03G123500' => 'ghi', 'Gohir.D04G121800' => 'ghi', 'Gohir.D07G131500' => 'ghi', 'Gohir.D07G136600' => 'ghi', 'Gohir.D08G011600' => 'ghi', 'Gohir.D11G346200' => 'ghi', 'Gorai.001G142800' => 'gra', 'Gorai.001G148700' => 'gra', 'Gorai.002G257300' => 'gra', 'Gorai.003G130000' => 'gra', 'Gorai.003G130100' => 'gra', 'Gorai.004G005300' => 'gra', 'Gorai.007G376500' => 'gra', 'Gorai.012G104700' => 'gra', 'GSVIVG01017946001' => 'vvi', 'GSVIVG01024928001' => 'vvi', 'GSVIVG01028227001' => 'vvi', 'GSVIVG01034151001' => 'vvi', 'HanXRQChr05g0135031' => 'han', 'HanXRQChr05g0135041' => 'han', 'HanXRQChr05g0140021' => 'han', 'HanXRQChr06g0178981' => 'han', 'HanXRQChr07g0188251' => 'han', 'HanXRQChr08g0235311' => 'han', 'HanXRQChr09g0271011' => 'han', 'HanXRQChr10g0293321' => 'han', 'HanXRQChr13g0388171' => 'han', 'Haze_00916' => 'cav', 'Haze_05063' => 'cav', 'Haze_20814' => 'cav', 'Haze_24128' => 'cav', 'Hma1.2p1_0745F.1_g212010' => 'hma', 'Hma1.2p1_0757F.1_g213260' => 'hma', 'Hma1.2p1_0936F.1_g238840' => 'hma', 'Hma1.2p1_1735F.1_g299890' => 'hma', 'Hma1.2p1_1861F.1_g305685' => 'hma', 'HPP92_003397' => 'vpl', 'HPP92_012597' => 'vpl', 'HPP92_015520' => 'vpl', 'HPP92_015539' => 'vpl', 'HPP92_020373' => 'vpl', 'Hund04938' => 'sun', 'Hund10677' => 'sun', 'Hund11033' => 'sun', 'Hund12155' => 'sun', 'Lalb_Chr01g0022551' => 'lal', 'Lalb_Chr03g0042341' => 'lal', 'Lalb_Chr07g0192931' => 'lal', 'Lalb_Chr12g0209551' => 'lal', 'Lalb_Chr19g0125251' => 'lal', 'Lalb_Chr19g0137891' => 'lal', 'Lalb_Chr21g0304641' => 'lal', 'Lalb_Chr21g0309881' => 'lal', 'Lj1A5T12' => 'lonja', 'Lj1C148G10' => 'lonja', 'Lj2A93T83' => 'lonja', 'Lj3A738G68' => 'lonja', 'Lj3C966T1' => 'lonja', 'Lj3g0018958' => 'lja', 'Lj3g0021831' => 'lja', 'Lj3g0025443' => 'lja', 'Lj4g0026809' => 'lja', 'Lj5g0012558' => 'lja', 'Lj5g0021586' => 'lja', 'Lsat_1_v5_gn_5_156840' => 'lsa', 'Lsat_1_v5_gn_8_73460' => 'lsa', 'Lsat_1_v5_gn_8_73481' => 'lsa', 'Lsat_1_v5_gn_9_31601' => 'lsa', 'Lsat_1_v5_gn_9_77320' => 'lsa', 'Manes.01G171300' => 'mes', 'Manes.01G171400' => 'mes', 'Manes.01G236100' => 'mes', 'Manes.02G130500' => 'mes', 'Manes.02G130600' => 'mes', 'Manes.03G180200' => 'mes', 'Manes.05G007000' => 'mes', 'Manes.08G084400' => 'mes', 'Manes.09G092600' => 'mes', 'Manes.15G027900' => 'mes', 'MBI04_g40948_MAGBIO' => 'mbi', 'MBI14_g12123_MAGBIO' => 'mbi', 'MBI18_g28915_MAGBIO' => 'mbi', 'MCO09G053' => 'mco', 'MCO11G782' => 'mco', 'MCO15G215' => 'mco', 'MD03G1088500' => 'mdo', 'MD03G1088600' => 'mdo', 'MD04G1130800' => 'mdo', 'MD09G1291700' => 'mdo', 'MD11G1097500' => 'mdo', 'MD11G1097600' => 'mdo', 'MD12G1143900' => 'mdo', 'MD13G1191400' => 'mdo', 'MD16G1191500' => 'mdo', 'Medtr1g085570' => 'mtr', 'Medtr1g104610' => 'mtr', 'Medtr2g097520' => 'mtr', 'Medtr4g021800' => 'mtr', 'Medtr4g021825' => 'mtr', 'Medtr4g064270' => 'mtr', 'Medtr4g064380' => 'mtr', 'Medtr7g062150' => 'mtr', 'MELO3C003138.2' => 'cme', 'MELO3C005187.2' => 'cme', 'MELO3C009252.2' => 'cme', 'MELO3C014481.2' => 'cme', 'MELO3C020616.2' => 'cme', 'MELO3C020617.2' => 'cme', 'MELO3C020618.2' => 'cme', 'Migut.G00328' => 'egut', 'Migut.J00320' => 'egut', 'Migut.L01000' => 'egut', 'Migut.L01953' => 'egut', 'MSTRG.10253' => 'ama', 'MSTRG.19077' => 'ama', 'MSTRG.26780' => 'ama', 'MSTRG.4023' => 'ama', 'MSTRG.5655' => 'ama', 'MSTRG.9992' => 'ama', 'Nitab4.5_0000043g0310' => 'nta', 'Nitab4.5_0000463g0080' => 'nta', 'Nitab4.5_0000705g0170' => 'nta', 'Nitab4.5_0001326g0060' => 'nta', 'Nitab4.5_0001628g0030' => 'nta', 'Nitab4.5_0002103g0110' => 'nta', 'Nitab4.5_0002946g0030' => 'nta', 'Nitab4.5_0004639g0030' => 'nta', 'Nn2g11149' => 'nnu', 'Nn2g13389' => 'nnu', 'Nn4g25326' => 'nnu', 'Nn4g26290' => 'nnu', 'Nn5g29865' => 'nnu', 'Oeu004163.1' => 'oeu', 'Oeu006901.1' => 'oeu', 'Oeu010096.1' => 'oeu', 'Oeu024340.1' => 'oeu', 'Oeu048369.1' => 'oeu', 'Os01g0973000' => 'osa', 'Os03g0273800' => 'osa', 'Os03g0701200' => 'osa', 'Os03g0834050' => 'osa', 'Os07g0634400' => 'osa', 'Peaxi162Scf00092g01414' => 'pax', 'Peaxi162Scf00165g00818' => 'pax', 'Peaxi162Scf00309g00516' => 'pax', 'Peaxi162Scf00774g00218' => 'pax', 'PGR004G1824' => 'pgr', 'PGR004G2606' => 'pgr', 'PGR031G2716' => 'pgr', 'PGR102G2460' => 'pgr', 'PGR142G2599' => 'pgr', 'PGSC0003DMG400000843' => 'stu', 'PGSC0003DMG400008829' => 'stu', 'PGSC0003DMG400030418' => 'stu', 'PGSC0003DMG400031834' => 'stu', 'PGSC0003DMG401028300' => 'stu', 'PGSC0003DMG402028300' => 'stu', 'Phvul.001G219300' => 'pvu', 'Phvul.007G056000' => 'pvu', 'Phvul.007G208000' => 'pvu', 'Phvul.008G119500' => 'pvu', 'Phvul.010G011200' => 'pvu', 'Phvul.010G014800' => 'pvu', 'Phvul.011G062900' => 'pvu', 'Phvul.L007043' => 'pvu', 'Potri.001G242300' => 'ptr', 'Potri.002G185300' => 'ptr', 'Potri.006G086900' => 'ptr', 'Potri.008G151700' => 'ptr', 'Potri.009G033500' => 'ptr', 'Potri.010G089300' => 'ptr', 'Potri.014G110800' => 'ptr', 'Pp3c27_8130' => 'ppa', 'Pp3c6_27410' => 'ppa', 'PRCOL_00001659' => 'pco', 'PRCOL_00001927' => 'pco', 'PRCOL_00003649' => 'pco', 'Prupe.1G011600' => 'ppe', 'Prupe.3G000800' => 'ppe', 'Prupe.3G001100' => 'ppe', 'Prupe.6G072700' => 'ppe', 'Prupe.6G072800' => 'ppe', 'Prupe.6G257300' => 'ppe', 'Prupe.8G033000' => 'ppe', 'Psat0s2633g0080' => 'psa', 'Psat0s3396g0080' => 'psa', 'Psat0s3396g0200' => 'psa', 'Psat3g139080' => 'psa', 'Psat5g285080' => 'psa', 'Psat6g157760' => 'psa', 'Psat6g208440' => 'psa', 'Psat7g215320' => 'psa', 'Psat7g215400' => 'psa', 'Psat7g235600' => 'psa', 'Psat7g235760' => 'psa', 'PSO063G4603' => 'pso', 'PSO210G0182' => 'pso', 'PSO210G0196' => 'pso', 'PSO339G0394' => 'pso', 'PSO339G4127' => 'pso', 'PSO513G0064' => 'pso', 'PSO761G0079' => 'pso', 'QL01p031003' => 'qlo', 'QL01p031078' => 'qlo', 'QL06p003004' => 'qlo', 'QL07p048731' => 'qlo', 'QL09p037427' => 'qlo', 'RcHm_v2.0_Chr3g0466361' => 'rch', 'RcHm_v2.0_Chr3g0485571' => 'rch', 'RcHm_v2.0_Chr4g0416551' => 'rch', 'RcHm_v2.0_Chr5g0065831' => 'rch', 'Rhsim01G0230500' => 'rsi', 'Rhsim05G0194000' => 'rsi', 'Rhsim08G0250400' => 'rsi', 'Sabra02G0131000' => 'sbr', 'Sabra06G0066300' => 'sbr', 'Sabra08G0115500' => 'sbr', 'Sabra09G0023900' => 'sbr', 'Sabra10G0054000' => 'sbr', 'Sabra14G0081500' => 'sbr', 'Sabra16G0147100' => 'sbr', 'SalBow2G2957' => 'sbo', 'SalBow4G3320' => 'sbo', 'SalBow8G1894' => 'sbo', 'Sc07g0007950' => 'sci', 'Sc12g0001360' => 'sci', 'Sc13g0004330' => 'sci', 'Sc20g0005010' => 'sci', 'Sed0000361' => 'sed', 'Sed0001706' => 'sed', 'Sed0002422' => 'sed', 'Sed0004029' => 'sed', 'Sed0004602' => 'sed', 'Sed0004943' => 'sed', 'Sed0008646' => 'sed', 'Sed0023313' => 'sed', 'Sed0024843' => 'sed', 'SEGI_00081' => 'sgi', 'SEGI_00947' => 'sgi', 'SEGI_04046' => 'sgi', 'SEGI_06880' => 'sgi', 'SEGI_09736' => 'sgi', 'SEGI_12741' => 'sgi', 'SEGI_14530' => 'sgi', 'SEGI_20705' => 'sgi', 'SEGI_26088' => 'sgi', 'SEGI_28323' => 'sgi', 'SEGI_33343' => 'sgi', 'SGA_v2.0_scaffold126G33775' => 'sas', 'SGA_v2.0_scaffold2G01337' => 'sas', 'SGA_v2.0_scaffold38G15006' => 'sas', 'SGA_v2.0_scaffold39G15264' => 'sas', 'SGA_v2.0_scaffold453G51880' => 'sas', 'SHI12696' => 'shi', 'SMO367G1096' => 'smo', 'Solyc01g068630.3' => 'sly', 'Solyc05g011880.3' => 'sly', 'Solyc06g076300.3' => 'sly', 'Solyc09g010940.4' => 'sly', 'Solyc09g075890.3' => 'sly', 'Sopen01g030560' => 'spe', 'Sopen05g006630' => 'spe', 'Sopen06g032720' => 'spe', 'Sopen09g005660' => 'spe', 'Sopen09g030690' => 'spe', 'Sp4g14540' => 'spa', 'Sp4g20030' => 'spa', 'Sp5g01320' => 'spa', 'Sp6g21170' => 'spa', 'Sp6g21180' => 'spa', 'Sp6g21190' => 'spa', 'Sp6g40220' => 'spa', 'TAR362G0122' => 'tar', 'TAR362G1338' => 'tar', 'TAR369G0590' => 'tar', 'TAR371G0824' => 'tar', 'TAR622G1429' => 'tar', 'TAR623G0734' => 'tar', 'TAR625G0441' => 'tar', 'TAR629G0976' => 'tar', 'TAR633G1195' => 'tar', 'TAR636G2660' => 'tar', 'THA.LOC104799440' => 'tha', 'THA.LOC104800966' => 'tha', 'THA.LOC104806559' => 'tha', 'THA.LOC104810765' => 'tha', 'THA.LOC104816266' => 'tha', 'THA.LOC104817419' => 'tha', 'THA.LOC104827021' => 'tha', 'Thecc.01G327400' => 'tca', 'Thecc.04G229200' => 'tca', 'Thecc.05G037400' => 'tca', 'Thecc.09G318600' => 'tca', 'Thecc.09G318700' => 'tca', 'Thhalv10006238m.g' => 'esa', 'Thhalv10014321m.g' => 'esa', 'Thhalv10014335m.g' => 'esa', 'Thhalv10015826m.g' => 'esa', 'Thhalv10017107m.g' => 'esa', 'Thhalv10017180m.g' => 'esa', 'Thhalv10029339m.g' => 'esa', 'TPR.G1699' => 'tpr', 'TPR.G23609' => 'tpr', 'TPR.G3081' => 'tpr', 'TPR.G40397' => 'tpr', 'TPR.G5522' => 'tpr', 'TPR.G5618' => 'tpr', 'TPR.G5626' => 'tpr', 'TWI09G1632' => 'twi', 'TWI23G1230' => 'twi', 'TWI53G1064' => 'twi', 'TWI59G0751' => 'twi', 'TWI74G0947' => 'twi', 'TWI77G0337' => 'twi', 'TWI79G1254' => 'twi', 'unitig_0.g2341' => 'ugi', 'unitig_26.g10006' => 'ugi', 'unitig_26.g10008' => 'ugi', 'unitig_26.g9192' => 'ugi', 'vmacro14547' => 'vma', 'vmacro15333' => 'vma', 'vmacro18743' => 'vma', 'vmacro20166' => 'vma', 'VMungo0331G0523' => 'vmu', 'VMungo0331G1202' => 'vmu', 'VMungo0720G1228' => 'vmu', 'VMungo0720G1514' => 'vmu', 'VMungo1080G0169' => 'vmu', 'VMungo1127G1475' => 'vmu', 'VMungo1383G1208' => 'vmu', 'VMungo1383G1698' => 'vmu', 'Zm00001eb012270' => 'zma', 'Zm00001eb054100' => 'zma', 'Zm00001eb063350' => 'zma', 'Zm00001eb328560' => 'zma', 'Zm00001eb342820' => 'zma', 'Zm00001eb362210' => 'zma', 'Zm00001eb397730' => 'zma', 'Zm00001eb399750' => 'zma' ), 'gf_id' => 'HOM05D000959', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000959' ), 'data_identifier' => 'HOM05D000959', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000959', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '622', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p07100' => 'bna', 'A03p11720' => 'bna', 'A05p08300' => 'bna', 'A05p13380' => 'bna', 'A09p54130' => 'bna', 'A10p16690' => 'bna', 'A10p16700' => 'bna', 'A10p33390' => 'bna', 'Aa31LG10G16020' => 'aar', 'Aa31LG1G11810' => 'aar', 'Aa31LG1G11830' => 'aar', 'Aa31LG1G22510' => 'aar', 'Aa31LG5G4890' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5793' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2310' => 'aag', 'Actinidia08499' => 'ach', 'Actinidia11262' => 'ach', 'Actinidia23926' => 'ach', 'Actinidia34420' => 'ach', 'Actinidia36970' => 'ach', 'Ah.02g111220' => 'amhyb', 'Ah.15g097750' => 'amhyb', 'AL4G27500' => 'aly', 'AL6G11470' => 'aly', 'AL8G35950' => 'aly', 'AL8G35960' => 'aly', 'AL8G35970' => 'aly', 'Aqoxy1G00912' => 'aox', 'Aqoxy2G02253' => 'aox', 'Aqoxy2G02411' => 'aox', 'Aqoxy5G00485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BZ66YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K8ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM4FUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6BF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HFV7XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25JBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0YNNV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MAKK6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P70IT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP2Z6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V61LZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YWP64R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3S9AI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7PGHH' => 'arhy', 'AT2G32150' => 'ath', 'AT3G62040' => 'ath', 'AT5G02230' => 'ath', 'AT5G59480' => 'ath', 'AT5G59490' => 'ath', 'ATR0332G060' => 'atr', 'ATR0559G190' => 'atr', 'ATR0693G294' => 'atr', 'Atru.chr3.3975' => 'acertr', 'Atru.chr3.3976' => 'acertr', 'Atru.chr3.3977' => 'acertr', 'Atru.chr4.2498' => 'acertr', 'Atru.chr5.838' => 'acertr', 'Atru.chr8.1990' => 'acertr', 'Atru.chr8.1991' => 'acertr', 'Atru.chr8.1992' => 'acertr', 'AUR62001759' => 'cqu', 'AUR62009545' => 'cqu', 'AUR62010474' => 'cqu', 'AUR62025820' => 'cqu', 'AUR62030422' => 'cqu', 'AUR62033605' => 'cqu', 'AUR62038615' => 'cqu', 'AUR62041347' => 'cqu', 'BcaB01g04574' => 'bca', 'BcaB02g09263' => 'bca', 'BcaB02g10453' => 'bca', 'BcaB05g22513' => 'bca', 'BcaB08g36253' => 'bca', 'BcaB08g36254' => 'bca', 'BcaC01g06519' => 'bca', 'BcaC02g11889' => 'bca', 'BcaC03g14010' => 'bca', 'BcaC03g18439' => 'bca', 'BcaC04g19765' => 'bca', 'BcaC09g48432' => 'bca', 'BcaNung07302' => 'bca', 'BolC2t06040H' => 'bol', 'BolC2t07346H' => 'bol', 'BolC3t13817H' => 'bol', 'BolC4t22625H' => 'bol', 'BolC4t23297H' => 'bol', 'BolC8t51278H' => 'bol', 'BolC9t58050H' => 'bol', 'BolC9t58051H' => 'bol', 'BolC9t60163H' => 'bol', 'BraA02t04712Z' => 'bra', 'BraA02t05791Z' => 'bra', 'BraA03t10483Z' => 'bra', 'BraA05t19795Z' => 'bra', 'BraA05t20276Z' => 'bra', 'BraA09t40827Z' => 'bra', 'BraA10t43750Z' => 'bra', 'BraA10t43751Z' => 'bra', 'BraA10t45370Z' => 'bra', 'C02p00400' => 'bna', 'C02p12460' => 'bna', 'C03p13680' => 'bna', 'C04p10270' => 'bna', 'C04p17500' => 'bna', 'C08p37010' => 'bna', 'C09p51880' => 'bna', 'C09p51890' => 'bna', 'C09p74300' => 'bna', 'CAN.G179.26' => 'can', 'CAN.G3384.1' => 'can', 'CAN.G394.68' => 'can', 'CAN.G907.13' => 'can', 'CANSAT11G0012' => 'cansat', 'CANSAT25G1586' => 'cansat', 'CANSAT35G0735' => 'cansat', 'CANSAT54G0556' => 'cansat', 'CANSAT64G0356' => 'cansat', 'CANSAT78G2042' => 'cansat', 'CARHR125920' => 'chi', 'CARHR131910' => 'chi', 'CARHR172390' => 'chi', 'CARHR211140' => 'chi', 'CARHR285850' => 'chi', 'CARHR285860' => 'chi', 'Carub.0004s1347' => 'cru', 'Carub.0004s1960' => 'cru', 'Carub.0005s2880' => 'cru', 'Carub.0006s0107' => 'cru', 'Carub.0008s2015' => 'cru', 'Carub.0008s2016' => 'cru', 'Carub.0008s2017' => 'cru', 'Ca_01315_v3' => 'car', 'Ca_05063_v3' => 'car', 'Ca_10231_v3' => 'car', 'Ca_10913_v3' => 'car', 'Ca_19156_v3' => 'car', 'Ca_23644_v3' => 'car', 'Ca_26735_v3' => 'car', 'Cc01_g13130' => 'ccan', 'Cc02_g21690' => 'ccan', 'Cc03_g03600' => 'ccan', 'Cc06_g02510' => 'ccan', 'CDE02G1265' => 'cde', 'CDE05G0415' => 'cde', 'CDE08G1082' => 'cde', 'Cfa005780' => 'cfa', 'Cfa011522' => 'cfa', 'Cfa011523' => 'cfa', 'Cfa015627' => 'cfa', 'Cfa017359' => 'cfa', 'Ciclev10005687m.g' => 'ccl', 'Ciclev10012173m.g' => 'ccl', 'Ciclev10021621m.g' => 'ccl', 'Ciclev10028968m.g' => 'ccl', 'Ciclev10029907m.g' => 'ccl', 'CiPaw.01G164800' => 'cil', 'CiPaw.07G083700' => 'cil', 'CiPaw.07G127000' => 'cil', 'CiPaw.07G136900' => 'cil', 'CiPaw.08G081700' => 'cil', 'CiPaw.09G194600' => 'cil', 'CiPaw.10G146500' => 'cil', 'CiPaw.13G091500' => 'cil', 'CiPaw.13G091600' => 'cil', 'ClCG00G003390' => 'cla', 'ClCG01G007220' => 'cla', 'ClCG03G001370' => 'cla', 'ClCG04G008100' => 'cla', 'ClCG06G006110' => 'cla', 'ClCG06G006130' => 'cla', 'ClCG10G021210' => 'cla', 'COL.COLO4_07648' => 'col', 'COL.COLO4_07650' => 'col', 'COL.COLO4_07651' => 'col', 'COL.COLO4_14780' => 'col', 'COL.COLO4_18546' => 'col', 'COL.COLO4_18547' => 'col', 'COL.COLO4_23103' => 'col', 'COL.COLO4_30419' => 'col', 'COL.COLO4_34232' => 'col', 'Cpa.g.sc169.20' => 'cpa', 'Cpa.g.sc57.45' => 'cpa', 'Cpa.g.sc58.124' => 'cpa', 'Cpa.g.sc58.125' => 'cpa', 'Cpa.g.sc81.118' => 'cpa', 'Cpa.g.sc81.119' => 'cpa', 'Cre12.g524700' => 'cre', 'CsaV3_1G034430' => 'csa', 'CsaV3_1G034440' => 'csa', 'CsaV3_1G034450' => 'csa', 'CsaV3_3G034830' => 'csa', 'CsaV3_4G025090' => 'csa', 'CsaV3_5G018660' => 'csa', 'CsaV3_6G038160' => 'csa', 'CSS0003447' => 'camsi', 'CSS0017840' => 'camsi', 'CSS0019260' => 'camsi', 'CSS0040375' => 'camsi', 'CSS0042533' => 'camsi', 'DCAR_005960' => 'dca', 'DCAR_012104' => 'dca', 'DCAR_012105' => 'dca', 'DCAR_012293' => 'dca', 'DCAR_015632' => 'dca', 'DCAR_024602' => 'dca', 'DCAR_028752' => 'dca', 'Dinv06261' => 'din', 'Dinv13982' => 'din', 'Dinv17029' => 'din', 'Dinv18463' => 'din', 'Dinv33181' => 'din', 'Dinv35585' => 'din', 'Dinv37161' => 'din', 'Dinv42977' => 'din', 'Dinv43122' => 'din', 'Dinv44517' => 'din', 'Duzib093G0256' => 'dzi', 'Duzib106G1254' => 'dzi', 'Duzib128G1789' => 'dzi', 'Duzib133G0633' => 'dzi', 'Duzib138G0510' => 'dzi', 'Duzib150G1084' => 'dzi', 'Duzib168G0488' => 'dzi', 'Duzib168G1523' => 'dzi', 'Duzib170G0133' => 'dzi', 'ECA234G1433' => 'eca', 'ECA236G1432' => 'eca', 'ECA236G2256' => 'eca', 'ECA236G2365' => 'eca', 'ECA236G4830' => 'eca', 'ECA248G1505' => 'eca', 'EL10Ac3g06431' => 'bvu', 'EL10Ac5g12577' => 'bvu', 'EL10Ac6g13533' => 'bvu', 'EL10Ac7g16045' => 'bvu', 'Eucgr.A01281' => 'egr', 'Eucgr.B02326' => 'egr', 'Eucgr.H03532' => 'egr', 'Eucgr.K00553' => 'egr', 'Eucgr.K03116' => 'egr', 'FAN02G3963' => 'fan', 'FAN05G0438' => 'fan', 'FAN09G2434' => 'fan', 'FAN12G3984' => 'fan', 'FAN14G0798' => 'fan', 'FAN17G0652' => 'fan', 'FAN19G1988' => 'fan', 'FAN22G0632' => 'fan', 'FAN23G0387' => 'fan', 'FAN26G1323' => 'fan', 'FAN28G0666' => 'fan', 'FvH4_1g26080' => 'fve', 'FvH4_3g36780' => 'fve', 'FvH4_4g15270' => 'fve', 'FvH4_6g13490' => 'fve', 'Glyma.01G098700' => 'gma', 'Glyma.03G065900' => 'gma', 'Glyma.03G073754' => 'gma', 'Glyma.03G073758' => 'gma', 'Glyma.03G083200' => 'gma', 'Glyma.03G225500' => 'gma', 'Glyma.05G037766' => 'gma', 'Glyma.07G133500' => 'gma', 'Glyma.10G139400' => 'gma', 'Glyma.10G248900' => 'gma', 'Glyma.11G137800' => 'gma', 'Glyma.12G061300' => 'gma', 'Glyma.13G337900' => 'gma', 'Glyma.15G036600' => 'gma', 'Glyma.18G182800' => 'gma', 'Glyma.19G222500' => 'gma', 'Glyma.20G144800' => 'gma', 'Gohir.A01G222000' => 'ghi', 'Gohir.A03G044000' => 'ghi', 'Gohir.A03G044100' => 'ghi', 'Gohir.A04G083100' => 'ghi', 'Gohir.A07G127200' => 'ghi', 'Gohir.A07G132400' => 'ghi', 'Gohir.A08G000700' => 'ghi', 'Gohir.A11G327300' => 'ghi', 'Gohir.D01G211500' => 'ghi', 'Gohir.D03G123400' => 'ghi', 'Gohir.D03G123500' => 'ghi', 'Gohir.D04G121800' => 'ghi', 'Gohir.D07G131500' => 'ghi', 'Gohir.D07G136600' => 'ghi', 'Gohir.D08G011600' => 'ghi', 'Gohir.D11G346200' => 'ghi', 'Gorai.001G142800' => 'gra', 'Gorai.001G148700' => 'gra', 'Gorai.002G257300' => 'gra', 'Gorai.003G130000' => 'gra', 'Gorai.003G130100' => 'gra', 'Gorai.004G005300' => 'gra', 'Gorai.007G376500' => 'gra', 'Gorai.012G104700' => 'gra', 'GSVIVG01017946001' => 'vvi', 'GSVIVG01024928001' => 'vvi', 'GSVIVG01028227001' => 'vvi', 'GSVIVG01034151001' => 'vvi', 'HanXRQChr05g0135031' => 'han', 'HanXRQChr05g0135041' => 'han', 'HanXRQChr05g0140021' => 'han', 'HanXRQChr06g0178981' => 'han', 'HanXRQChr07g0188251' => 'han', 'HanXRQChr08g0235311' => 'han', 'HanXRQChr09g0271011' => 'han', 'HanXRQChr10g0293321' => 'han', 'HanXRQChr13g0388171' => 'han', 'Haze_00916' => 'cav', 'Haze_05063' => 'cav', 'Haze_20814' => 'cav', 'Haze_24128' => 'cav', 'Hma1.2p1_0745F.1_g212010' => 'hma', 'Hma1.2p1_0757F.1_g213260' => 'hma', 'Hma1.2p1_0936F.1_g238840' => 'hma', 'Hma1.2p1_1735F.1_g299890' => 'hma', 'Hma1.2p1_1861F.1_g305685' => 'hma', 'HPP92_003397' => 'vpl', 'HPP92_012597' => 'vpl', 'HPP92_015520' => 'vpl', 'HPP92_015539' => 'vpl', 'HPP92_020373' => 'vpl', 'Hund04938' => 'sun', 'Hund10677' => 'sun', 'Hund11033' => 'sun', 'Hund12155' => 'sun', 'Lalb_Chr01g0022551' => 'lal', 'Lalb_Chr03g0042341' => 'lal', 'Lalb_Chr07g0192931' => 'lal', 'Lalb_Chr12g0209551' => 'lal', 'Lalb_Chr19g0125251' => 'lal', 'Lalb_Chr19g0137891' => 'lal', 'Lalb_Chr21g0304641' => 'lal', 'Lalb_Chr21g0309881' => 'lal', 'Lj1A5T12' => 'lonja', 'Lj1C148G10' => 'lonja', 'Lj2A93T83' => 'lonja', 'Lj3A738G68' => 'lonja', 'Lj3C966T1' => 'lonja', 'Lj3g0018958' => 'lja', 'Lj3g0021831' => 'lja', 'Lj3g0025443' => 'lja', 'Lj4g0026809' => 'lja', 'Lj5g0012558' => 'lja', 'Lj5g0021586' => 'lja', 'Lsat_1_v5_gn_5_156840' => 'lsa', 'Lsat_1_v5_gn_8_73460' => 'lsa', 'Lsat_1_v5_gn_8_73481' => 'lsa', 'Lsat_1_v5_gn_9_31601' => 'lsa', 'Lsat_1_v5_gn_9_77320' => 'lsa', 'Manes.01G171300' => 'mes', 'Manes.01G171400' => 'mes', 'Manes.01G236100' => 'mes', 'Manes.02G130500' => 'mes', 'Manes.02G130600' => 'mes', 'Manes.03G180200' => 'mes', 'Manes.05G007000' => 'mes', 'Manes.08G084400' => 'mes', 'Manes.09G092600' => 'mes', 'Manes.15G027900' => 'mes', 'MBI04_g40948_MAGBIO' => 'mbi', 'MBI14_g12123_MAGBIO' => 'mbi', 'MBI18_g28915_MAGBIO' => 'mbi', 'MCO09G053' => 'mco', 'MCO11G782' => 'mco', 'MCO15G215' => 'mco', 'MD03G1088500' => 'mdo', 'MD03G1088600' => 'mdo', 'MD04G1130800' => 'mdo', 'MD09G1291700' => 'mdo', 'MD11G1097500' => 'mdo', 'MD11G1097600' => 'mdo', 'MD12G1143900' => 'mdo', 'MD13G1191400' => 'mdo', 'MD16G1191500' => 'mdo', 'Medtr1g085570' => 'mtr', 'Medtr1g104610' => 'mtr', 'Medtr2g097520' => 'mtr', 'Medtr4g021800' => 'mtr', 'Medtr4g021825' => 'mtr', 'Medtr4g064270' => 'mtr', 'Medtr4g064380' => 'mtr', 'Medtr7g062150' => 'mtr', 'MELO3C003138.2' => 'cme', 'MELO3C005187.2' => 'cme', 'MELO3C009252.2' => 'cme', 'MELO3C014481.2' => 'cme', 'MELO3C020616.2' => 'cme', 'MELO3C020617.2' => 'cme', 'MELO3C020618.2' => 'cme', 'Migut.G00328' => 'egut', 'Migut.J00320' => 'egut', 'Migut.L01000' => 'egut', 'Migut.L01953' => 'egut', 'MSTRG.10253' => 'ama', 'MSTRG.19077' => 'ama', 'MSTRG.26780' => 'ama', 'MSTRG.4023' => 'ama', 'MSTRG.5655' => 'ama', 'MSTRG.9992' => 'ama', 'Nitab4.5_0000043g0310' => 'nta', 'Nitab4.5_0000463g0080' => 'nta', 'Nitab4.5_0000705g0170' => 'nta', 'Nitab4.5_0001326g0060' => 'nta', 'Nitab4.5_0001628g0030' => 'nta', 'Nitab4.5_0002103g0110' => 'nta', 'Nitab4.5_0002946g0030' => 'nta', 'Nitab4.5_0004639g0030' => 'nta', 'Nn2g11149' => 'nnu', 'Nn2g13389' => 'nnu', 'Nn4g25326' => 'nnu', 'Nn4g26290' => 'nnu', 'Nn5g29865' => 'nnu', 'Oeu004163.1' => 'oeu', 'Oeu006901.1' => 'oeu', 'Oeu010096.1' => 'oeu', 'Oeu024340.1' => 'oeu', 'Oeu048369.1' => 'oeu', 'Os01g0973000' => 'osa', 'Os03g0273800' => 'osa', 'Os03g0701200' => 'osa', 'Os03g0834050' => 'osa', 'Os07g0634400' => 'osa', 'Peaxi162Scf00092g01414' => 'pax', 'Peaxi162Scf00165g00818' => 'pax', 'Peaxi162Scf00309g00516' => 'pax', 'Peaxi162Scf00774g00218' => 'pax', 'PGR004G1824' => 'pgr', 'PGR004G2606' => 'pgr', 'PGR031G2716' => 'pgr', 'PGR102G2460' => 'pgr', 'PGR142G2599' => 'pgr', 'PGSC0003DMG400000843' => 'stu', 'PGSC0003DMG400008829' => 'stu', 'PGSC0003DMG400030418' => 'stu', 'PGSC0003DMG400031834' => 'stu', 'PGSC0003DMG401028300' => 'stu', 'PGSC0003DMG402028300' => 'stu', 'Phvul.001G219300' => 'pvu', 'Phvul.007G056000' => 'pvu', 'Phvul.007G208000' => 'pvu', 'Phvul.008G119500' => 'pvu', 'Phvul.010G011200' => 'pvu', 'Phvul.010G014800' => 'pvu', 'Phvul.011G062900' => 'pvu', 'Phvul.L007043' => 'pvu', 'Potri.001G242300' => 'ptr', 'Potri.002G185300' => 'ptr', 'Potri.006G086900' => 'ptr', 'Potri.008G151700' => 'ptr', 'Potri.009G033500' => 'ptr', 'Potri.010G089300' => 'ptr', 'Potri.014G110800' => 'ptr', 'Pp3c27_8130' => 'ppa', 'Pp3c6_27410' => 'ppa', 'PRCOL_00001659' => 'pco', 'PRCOL_00001927' => 'pco', 'PRCOL_00003649' => 'pco', 'Prupe.1G011600' => 'ppe', 'Prupe.3G000800' => 'ppe', 'Prupe.3G001100' => 'ppe', 'Prupe.6G072700' => 'ppe', 'Prupe.6G072800' => 'ppe', 'Prupe.6G257300' => 'ppe', 'Prupe.8G033000' => 'ppe', 'Psat0s2633g0080' => 'psa', 'Psat0s3396g0080' => 'psa', 'Psat0s3396g0200' => 'psa', 'Psat3g139080' => 'psa', 'Psat5g285080' => 'psa', 'Psat6g157760' => 'psa', 'Psat6g208440' => 'psa', 'Psat7g215320' => 'psa', 'Psat7g215400' => 'psa', 'Psat7g235600' => 'psa', 'Psat7g235760' => 'psa', 'PSO063G4603' => 'pso', 'PSO210G0182' => 'pso', 'PSO210G0196' => 'pso', 'PSO339G0394' => 'pso', 'PSO339G4127' => 'pso', 'PSO513G0064' => 'pso', 'PSO761G0079' => 'pso', 'QL01p031003' => 'qlo', 'QL01p031078' => 'qlo', 'QL06p003004' => 'qlo', 'QL07p048731' => 'qlo', 'QL09p037427' => 'qlo', 'RcHm_v2.0_Chr3g0466361' => 'rch', 'RcHm_v2.0_Chr3g0485571' => 'rch', 'RcHm_v2.0_Chr4g0416551' => 'rch', 'RcHm_v2.0_Chr5g0065831' => 'rch', 'Rhsim01G0230500' => 'rsi', 'Rhsim05G0194000' => 'rsi', 'Rhsim08G0250400' => 'rsi', 'Sabra02G0131000' => 'sbr', 'Sabra06G0066300' => 'sbr', 'Sabra08G0115500' => 'sbr', 'Sabra09G0023900' => 'sbr', 'Sabra10G0054000' => 'sbr', 'Sabra14G0081500' => 'sbr', 'Sabra16G0147100' => 'sbr', 'SalBow2G2957' => 'sbo', 'SalBow4G3320' => 'sbo', 'SalBow8G1894' => 'sbo', 'Sc07g0007950' => 'sci', 'Sc12g0001360' => 'sci', 'Sc13g0004330' => 'sci', 'Sc20g0005010' => 'sci', 'Sed0000361' => 'sed', 'Sed0001706' => 'sed', 'Sed0002422' => 'sed', 'Sed0004029' => 'sed', 'Sed0004602' => 'sed', 'Sed0004943' => 'sed', 'Sed0008646' => 'sed', 'Sed0023313' => 'sed', 'Sed0024843' => 'sed', 'SEGI_00081' => 'sgi', 'SEGI_00947' => 'sgi', 'SEGI_04046' => 'sgi', 'SEGI_06880' => 'sgi', 'SEGI_09736' => 'sgi', 'SEGI_12741' => 'sgi', 'SEGI_14530' => 'sgi', 'SEGI_20705' => 'sgi', 'SEGI_26088' => 'sgi', 'SEGI_28323' => 'sgi', 'SEGI_33343' => 'sgi', 'SGA_v2.0_scaffold126G33775' => 'sas', 'SGA_v2.0_scaffold2G01337' => 'sas', 'SGA_v2.0_scaffold38G15006' => 'sas', 'SGA_v2.0_scaffold39G15264' => 'sas', 'SGA_v2.0_scaffold453G51880' => 'sas', 'SHI12696' => 'shi', 'SMO367G1096' => 'smo', 'Solyc01g068630.3' => 'sly', 'Solyc05g011880.3' => 'sly', 'Solyc06g076300.3' => 'sly', 'Solyc09g010940.4' => 'sly', 'Solyc09g075890.3' => 'sly', 'Sopen01g030560' => 'spe', 'Sopen05g006630' => 'spe', 'Sopen06g032720' => 'spe', 'Sopen09g005660' => 'spe', 'Sopen09g030690' => 'spe', 'Sp4g14540' => 'spa', 'Sp4g20030' => 'spa', 'Sp5g01320' => 'spa', 'Sp6g21170' => 'spa', 'Sp6g21180' => 'spa', 'Sp6g21190' => 'spa', 'Sp6g40220' => 'spa', 'TAR362G0122' => 'tar', 'TAR362G1338' => 'tar', 'TAR369G0590' => 'tar', 'TAR371G0824' => 'tar', 'TAR622G1429' => 'tar', 'TAR623G0734' => 'tar', 'TAR625G0441' => 'tar', 'TAR629G0976' => 'tar', 'TAR633G1195' => 'tar', 'TAR636G2660' => 'tar', 'THA.LOC104799440' => 'tha', 'THA.LOC104800966' => 'tha', 'THA.LOC104806559' => 'tha', 'THA.LOC104810765' => 'tha', 'THA.LOC104816266' => 'tha', 'THA.LOC104817419' => 'tha', 'THA.LOC104827021' => 'tha', 'Thecc.01G327400' => 'tca', 'Thecc.04G229200' => 'tca', 'Thecc.05G037400' => 'tca', 'Thecc.09G318600' => 'tca', 'Thecc.09G318700' => 'tca', 'Thhalv10006238m.g' => 'esa', 'Thhalv10014321m.g' => 'esa', 'Thhalv10014335m.g' => 'esa', 'Thhalv10015826m.g' => 'esa', 'Thhalv10017107m.g' => 'esa', 'Thhalv10017180m.g' => 'esa', 'Thhalv10029339m.g' => 'esa', 'TPR.G1699' => 'tpr', 'TPR.G23609' => 'tpr', 'TPR.G3081' => 'tpr', 'TPR.G40397' => 'tpr', 'TPR.G5522' => 'tpr', 'TPR.G5618' => 'tpr', 'TPR.G5626' => 'tpr', 'TWI09G1632' => 'twi', 'TWI23G1230' => 'twi', 'TWI53G1064' => 'twi', 'TWI59G0751' => 'twi', 'TWI74G0947' => 'twi', 'TWI77G0337' => 'twi', 'TWI79G1254' => 'twi', 'unitig_0.g2341' => 'ugi', 'unitig_26.g10006' => 'ugi', 'unitig_26.g10008' => 'ugi', 'unitig_26.g9192' => 'ugi', 'vmacro14547' => 'vma', 'vmacro15333' => 'vma', 'vmacro18743' => 'vma', 'vmacro20166' => 'vma', 'VMungo0331G0523' => 'vmu', 'VMungo0331G1202' => 'vmu', 'VMungo0720G1228' => 'vmu', 'VMungo0720G1514' => 'vmu', 'VMungo1080G0169' => 'vmu', 'VMungo1127G1475' => 'vmu', 'VMungo1383G1208' => 'vmu', 'VMungo1383G1698' => 'vmu', 'Zm00001eb012270' => 'zma', 'Zm00001eb054100' => 'zma', 'Zm00001eb063350' => 'zma', 'Zm00001eb328560' => 'zma', 'Zm00001eb342820' => 'zma', 'Zm00001eb362210' => 'zma', 'Zm00001eb397730' => 'zma', 'Zm00001eb399750' => 'zma' ) $gf_id = 'HOM05D000959' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000959' ) $data_identifier = 'HOM05D000959' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 5, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 5, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 10, 'mbi' => (int) 3, 'mco' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 2, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 3, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 11, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399750' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000959', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '622', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p07100' => 'bna', 'A03p11720' => 'bna', 'A05p08300' => 'bna', 'A05p13380' => 'bna', 'A09p54130' => 'bna', 'A10p16690' => 'bna', 'A10p16700' => 'bna', 'A10p33390' => 'bna', 'Aa31LG10G16020' => 'aar', 'Aa31LG1G11810' => 'aar', 'Aa31LG1G11830' => 'aar', 'Aa31LG1G22510' => 'aar', 'Aa31LG5G4890' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5793' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2310' => 'aag', 'Actinidia08499' => 'ach', 'Actinidia11262' => 'ach', 'Actinidia23926' => 'ach', 'Actinidia34420' => 'ach', 'Actinidia36970' => 'ach', 'Ah.02g111220' => 'amhyb', 'Ah.15g097750' => 'amhyb', 'AL4G27500' => 'aly', 'AL6G11470' => 'aly', 'AL8G35950' => 'aly', 'AL8G35960' => 'aly', 'AL8G35970' => 'aly', 'Aqoxy1G00912' => 'aox', 'Aqoxy2G02253' => 'aox', 'Aqoxy2G02411' => 'aox', 'Aqoxy5G00485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BZ66YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K8ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM4FUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6BF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HFV7XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25JBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0YNNV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MAKK6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P70IT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP2Z6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V61LZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YWP64R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3S9AI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7PGHH' => 'arhy', 'AT2G32150' => 'ath', 'AT3G62040' => 'ath', 'AT5G02230' => 'ath', 'AT5G59480' => 'ath', 'AT5G59490' => 'ath', 'ATR0332G060' => 'atr', 'ATR0559G190' => 'atr', 'ATR0693G294' => 'atr', 'Atru.chr3.3975' => 'acertr', 'Atru.chr3.3976' => 'acertr', 'Atru.chr3.3977' => 'acertr', 'Atru.chr4.2498' => 'acertr', 'Atru.chr5.838' => 'acertr', 'Atru.chr8.1990' => 'acertr', 'Atru.chr8.1991' => 'acertr', 'Atru.chr8.1992' => 'acertr', 'AUR62001759' => 'cqu', 'AUR62009545' => 'cqu', 'AUR62010474' => 'cqu', 'AUR62025820' => 'cqu', 'AUR62030422' => 'cqu', 'AUR62033605' => 'cqu', 'AUR62038615' => 'cqu', 'AUR62041347' => 'cqu', 'BcaB01g04574' => 'bca', 'BcaB02g09263' => 'bca', 'BcaB02g10453' => 'bca', 'BcaB05g22513' => 'bca', 'BcaB08g36253' => 'bca', 'BcaB08g36254' => 'bca', 'BcaC01g06519' => 'bca', 'BcaC02g11889' => 'bca', 'BcaC03g14010' => 'bca', 'BcaC03g18439' => 'bca', 'BcaC04g19765' => 'bca', 'BcaC09g48432' => 'bca', 'BcaNung07302' => 'bca', 'BolC2t06040H' => 'bol', 'BolC2t07346H' => 'bol', 'BolC3t13817H' => 'bol', 'BolC4t22625H' => 'bol', 'BolC4t23297H' => 'bol', 'BolC8t51278H' => 'bol', 'BolC9t58050H' => 'bol', 'BolC9t58051H' => 'bol', 'BolC9t60163H' => 'bol', 'BraA02t04712Z' => 'bra', 'BraA02t05791Z' => 'bra', 'BraA03t10483Z' => 'bra', 'BraA05t19795Z' => 'bra', 'BraA05t20276Z' => 'bra', 'BraA09t40827Z' => 'bra', 'BraA10t43750Z' => 'bra', 'BraA10t43751Z' => 'bra', 'BraA10t45370Z' => 'bra', 'C02p00400' => 'bna', 'C02p12460' => 'bna', 'C03p13680' => 'bna', 'C04p10270' => 'bna', 'C04p17500' => 'bna', 'C08p37010' => 'bna', 'C09p51880' => 'bna', 'C09p51890' => 'bna', 'C09p74300' => 'bna', 'CAN.G179.26' => 'can', 'CAN.G3384.1' => 'can', 'CAN.G394.68' => 'can', 'CAN.G907.13' => 'can', 'CANSAT11G0012' => 'cansat', 'CANSAT25G1586' => 'cansat', 'CANSAT35G0735' => 'cansat', 'CANSAT54G0556' => 'cansat', 'CANSAT64G0356' => 'cansat', 'CANSAT78G2042' => 'cansat', 'CARHR125920' => 'chi', 'CARHR131910' => 'chi', 'CARHR172390' => 'chi', 'CARHR211140' => 'chi', 'CARHR285850' => 'chi', 'CARHR285860' => 'chi', 'Carub.0004s1347' => 'cru', 'Carub.0004s1960' => 'cru', 'Carub.0005s2880' => 'cru', 'Carub.0006s0107' => 'cru', 'Carub.0008s2015' => 'cru', 'Carub.0008s2016' => 'cru', 'Carub.0008s2017' => 'cru', 'Ca_01315_v3' => 'car', 'Ca_05063_v3' => 'car', 'Ca_10231_v3' => 'car', 'Ca_10913_v3' => 'car', 'Ca_19156_v3' => 'car', 'Ca_23644_v3' => 'car', 'Ca_26735_v3' => 'car', 'Cc01_g13130' => 'ccan', 'Cc02_g21690' => 'ccan', 'Cc03_g03600' => 'ccan', 'Cc06_g02510' => 'ccan', 'CDE02G1265' => 'cde', 'CDE05G0415' => 'cde', 'CDE08G1082' => 'cde', 'Cfa005780' => 'cfa', 'Cfa011522' => 'cfa', 'Cfa011523' => 'cfa', 'Cfa015627' => 'cfa', 'Cfa017359' => 'cfa', 'Ciclev10005687m.g' => 'ccl', 'Ciclev10012173m.g' => 'ccl', 'Ciclev10021621m.g' => 'ccl', 'Ciclev10028968m.g' => 'ccl', 'Ciclev10029907m.g' => 'ccl', 'CiPaw.01G164800' => 'cil', 'CiPaw.07G083700' => 'cil', 'CiPaw.07G127000' => 'cil', 'CiPaw.07G136900' => 'cil', 'CiPaw.08G081700' => 'cil', 'CiPaw.09G194600' => 'cil', 'CiPaw.10G146500' => 'cil', 'CiPaw.13G091500' => 'cil', 'CiPaw.13G091600' => 'cil', 'ClCG00G003390' => 'cla', 'ClCG01G007220' => 'cla', 'ClCG03G001370' => 'cla', 'ClCG04G008100' => 'cla', 'ClCG06G006110' => 'cla', 'ClCG06G006130' => 'cla', 'ClCG10G021210' => 'cla', 'COL.COLO4_07648' => 'col', 'COL.COLO4_07650' => 'col', 'COL.COLO4_07651' => 'col', 'COL.COLO4_14780' => 'col', 'COL.COLO4_18546' => 'col', 'COL.COLO4_18547' => 'col', 'COL.COLO4_23103' => 'col', 'COL.COLO4_30419' => 'col', 'COL.COLO4_34232' => 'col', 'Cpa.g.sc169.20' => 'cpa', 'Cpa.g.sc57.45' => 'cpa', 'Cpa.g.sc58.124' => 'cpa', 'Cpa.g.sc58.125' => 'cpa', 'Cpa.g.sc81.118' => 'cpa', 'Cpa.g.sc81.119' => 'cpa', 'Cre12.g524700' => 'cre', 'CsaV3_1G034430' => 'csa', 'CsaV3_1G034440' => 'csa', 'CsaV3_1G034450' => 'csa', 'CsaV3_3G034830' => 'csa', 'CsaV3_4G025090' => 'csa', 'CsaV3_5G018660' => 'csa', 'CsaV3_6G038160' => 'csa', 'CSS0003447' => 'camsi', 'CSS0017840' => 'camsi', 'CSS0019260' => 'camsi', 'CSS0040375' => 'camsi', 'CSS0042533' => 'camsi', 'DCAR_005960' => 'dca', 'DCAR_012104' => 'dca', 'DCAR_012105' => 'dca', 'DCAR_012293' => 'dca', 'DCAR_015632' => 'dca', 'DCAR_024602' => 'dca', 'DCAR_028752' => 'dca', 'Dinv06261' => 'din', 'Dinv13982' => 'din', 'Dinv17029' => 'din', 'Dinv18463' => 'din', 'Dinv33181' => 'din', 'Dinv35585' => 'din', 'Dinv37161' => 'din', 'Dinv42977' => 'din', 'Dinv43122' => 'din', 'Dinv44517' => 'din', 'Duzib093G0256' => 'dzi', 'Duzib106G1254' => 'dzi', 'Duzib128G1789' => 'dzi', 'Duzib133G0633' => 'dzi', 'Duzib138G0510' => 'dzi', 'Duzib150G1084' => 'dzi', 'Duzib168G0488' => 'dzi', 'Duzib168G1523' => 'dzi', 'Duzib170G0133' => 'dzi', 'ECA234G1433' => 'eca', 'ECA236G1432' => 'eca', 'ECA236G2256' => 'eca', 'ECA236G2365' => 'eca', 'ECA236G4830' => 'eca', 'ECA248G1505' => 'eca', 'EL10Ac3g06431' => 'bvu', 'EL10Ac5g12577' => 'bvu', 'EL10Ac6g13533' => 'bvu', 'EL10Ac7g16045' => 'bvu', 'Eucgr.A01281' => 'egr', 'Eucgr.B02326' => 'egr', 'Eucgr.H03532' => 'egr', 'Eucgr.K00553' => 'egr', 'Eucgr.K03116' => 'egr', 'FAN02G3963' => 'fan', 'FAN05G0438' => 'fan', 'FAN09G2434' => 'fan', 'FAN12G3984' => 'fan', 'FAN14G0798' => 'fan', 'FAN17G0652' => 'fan', 'FAN19G1988' => 'fan', 'FAN22G0632' => 'fan', 'FAN23G0387' => 'fan', 'FAN26G1323' => 'fan', 'FAN28G0666' => 'fan', 'FvH4_1g26080' => 'fve', 'FvH4_3g36780' => 'fve', 'FvH4_4g15270' => 'fve', 'FvH4_6g13490' => 'fve', 'Glyma.01G098700' => 'gma', 'Glyma.03G065900' => 'gma', 'Glyma.03G073754' => 'gma', 'Glyma.03G073758' => 'gma', 'Glyma.03G083200' => 'gma', 'Glyma.03G225500' => 'gma', 'Glyma.05G037766' => 'gma', 'Glyma.07G133500' => 'gma', 'Glyma.10G139400' => 'gma', 'Glyma.10G248900' => 'gma', 'Glyma.11G137800' => 'gma', 'Glyma.12G061300' => 'gma', 'Glyma.13G337900' => 'gma', 'Glyma.15G036600' => 'gma', 'Glyma.18G182800' => 'gma', 'Glyma.19G222500' => 'gma', 'Glyma.20G144800' => 'gma', 'Gohir.A01G222000' => 'ghi', 'Gohir.A03G044000' => 'ghi', 'Gohir.A03G044100' => 'ghi', 'Gohir.A04G083100' => 'ghi', 'Gohir.A07G127200' => 'ghi', 'Gohir.A07G132400' => 'ghi', 'Gohir.A08G000700' => 'ghi', 'Gohir.A11G327300' => 'ghi', 'Gohir.D01G211500' => 'ghi', 'Gohir.D03G123400' => 'ghi', 'Gohir.D03G123500' => 'ghi', 'Gohir.D04G121800' => 'ghi', 'Gohir.D07G131500' => 'ghi', 'Gohir.D07G136600' => 'ghi', 'Gohir.D08G011600' => 'ghi', 'Gohir.D11G346200' => 'ghi', 'Gorai.001G142800' => 'gra', 'Gorai.001G148700' => 'gra', 'Gorai.002G257300' => 'gra', 'Gorai.003G130000' => 'gra', 'Gorai.003G130100' => 'gra', 'Gorai.004G005300' => 'gra', 'Gorai.007G376500' => 'gra', 'Gorai.012G104700' => 'gra', 'GSVIVG01017946001' => 'vvi', 'GSVIVG01024928001' => 'vvi', 'GSVIVG01028227001' => 'vvi', 'GSVIVG01034151001' => 'vvi', 'HanXRQChr05g0135031' => 'han', 'HanXRQChr05g0135041' => 'han', 'HanXRQChr05g0140021' => 'han', 'HanXRQChr06g0178981' => 'han', 'HanXRQChr07g0188251' => 'han', 'HanXRQChr08g0235311' => 'han', 'HanXRQChr09g0271011' => 'han', 'HanXRQChr10g0293321' => 'han', 'HanXRQChr13g0388171' => 'han', 'Haze_00916' => 'cav', 'Haze_05063' => 'cav', 'Haze_20814' => 'cav', 'Haze_24128' => 'cav', 'Hma1.2p1_0745F.1_g212010' => 'hma', 'Hma1.2p1_0757F.1_g213260' => 'hma', 'Hma1.2p1_0936F.1_g238840' => 'hma', 'Hma1.2p1_1735F.1_g299890' => 'hma', 'Hma1.2p1_1861F.1_g305685' => 'hma', 'HPP92_003397' => 'vpl', 'HPP92_012597' => 'vpl', 'HPP92_015520' => 'vpl', 'HPP92_015539' => 'vpl', 'HPP92_020373' => 'vpl', 'Hund04938' => 'sun', 'Hund10677' => 'sun', 'Hund11033' => 'sun', 'Hund12155' => 'sun', 'Lalb_Chr01g0022551' => 'lal', 'Lalb_Chr03g0042341' => 'lal', 'Lalb_Chr07g0192931' => 'lal', 'Lalb_Chr12g0209551' => 'lal', 'Lalb_Chr19g0125251' => 'lal', 'Lalb_Chr19g0137891' => 'lal', 'Lalb_Chr21g0304641' => 'lal', 'Lalb_Chr21g0309881' => 'lal', 'Lj1A5T12' => 'lonja', 'Lj1C148G10' => 'lonja', 'Lj2A93T83' => 'lonja', 'Lj3A738G68' => 'lonja', 'Lj3C966T1' => 'lonja', 'Lj3g0018958' => 'lja', 'Lj3g0021831' => 'lja', 'Lj3g0025443' => 'lja', 'Lj4g0026809' => 'lja', 'Lj5g0012558' => 'lja', 'Lj5g0021586' => 'lja', 'Lsat_1_v5_gn_5_156840' => 'lsa', 'Lsat_1_v5_gn_8_73460' => 'lsa', 'Lsat_1_v5_gn_8_73481' => 'lsa', 'Lsat_1_v5_gn_9_31601' => 'lsa', 'Lsat_1_v5_gn_9_77320' => 'lsa', 'Manes.01G171300' => 'mes', 'Manes.01G171400' => 'mes', 'Manes.01G236100' => 'mes', 'Manes.02G130500' => 'mes', 'Manes.02G130600' => 'mes', 'Manes.03G180200' => 'mes', 'Manes.05G007000' => 'mes', 'Manes.08G084400' => 'mes', 'Manes.09G092600' => 'mes', 'Manes.15G027900' => 'mes', 'MBI04_g40948_MAGBIO' => 'mbi', 'MBI14_g12123_MAGBIO' => 'mbi', 'MBI18_g28915_MAGBIO' => 'mbi', 'MCO09G053' => 'mco', 'MCO11G782' => 'mco', 'MCO15G215' => 'mco', 'MD03G1088500' => 'mdo', 'MD03G1088600' => 'mdo', 'MD04G1130800' => 'mdo', 'MD09G1291700' => 'mdo', 'MD11G1097500' => 'mdo', 'MD11G1097600' => 'mdo', 'MD12G1143900' => 'mdo', 'MD13G1191400' => 'mdo', 'MD16G1191500' => 'mdo', 'Medtr1g085570' => 'mtr', 'Medtr1g104610' => 'mtr', 'Medtr2g097520' => 'mtr', 'Medtr4g021800' => 'mtr', 'Medtr4g021825' => 'mtr', 'Medtr4g064270' => 'mtr', 'Medtr4g064380' => 'mtr', 'Medtr7g062150' => 'mtr', 'MELO3C003138.2' => 'cme', 'MELO3C005187.2' => 'cme', 'MELO3C009252.2' => 'cme', 'MELO3C014481.2' => 'cme', 'MELO3C020616.2' => 'cme', 'MELO3C020617.2' => 'cme', 'MELO3C020618.2' => 'cme', 'Migut.G00328' => 'egut', 'Migut.J00320' => 'egut', 'Migut.L01000' => 'egut', 'Migut.L01953' => 'egut', 'MSTRG.10253' => 'ama', 'MSTRG.19077' => 'ama', 'MSTRG.26780' => 'ama', 'MSTRG.4023' => 'ama', 'MSTRG.5655' => 'ama', 'MSTRG.9992' => 'ama', 'Nitab4.5_0000043g0310' => 'nta', 'Nitab4.5_0000463g0080' => 'nta', 'Nitab4.5_0000705g0170' => 'nta', 'Nitab4.5_0001326g0060' => 'nta', 'Nitab4.5_0001628g0030' => 'nta', 'Nitab4.5_0002103g0110' => 'nta', 'Nitab4.5_0002946g0030' => 'nta', 'Nitab4.5_0004639g0030' => 'nta', 'Nn2g11149' => 'nnu', 'Nn2g13389' => 'nnu', 'Nn4g25326' => 'nnu', 'Nn4g26290' => 'nnu', 'Nn5g29865' => 'nnu', 'Oeu004163.1' => 'oeu', 'Oeu006901.1' => 'oeu', 'Oeu010096.1' => 'oeu', 'Oeu024340.1' => 'oeu', 'Oeu048369.1' => 'oeu', 'Os01g0973000' => 'osa', 'Os03g0273800' => 'osa', 'Os03g0701200' => 'osa', 'Os03g0834050' => 'osa', 'Os07g0634400' => 'osa', 'Peaxi162Scf00092g01414' => 'pax', 'Peaxi162Scf00165g00818' => 'pax', 'Peaxi162Scf00309g00516' => 'pax', 'Peaxi162Scf00774g00218' => 'pax', 'PGR004G1824' => 'pgr', 'PGR004G2606' => 'pgr', 'PGR031G2716' => 'pgr', 'PGR102G2460' => 'pgr', 'PGR142G2599' => 'pgr', 'PGSC0003DMG400000843' => 'stu', 'PGSC0003DMG400008829' => 'stu', 'PGSC0003DMG400030418' => 'stu', 'PGSC0003DMG400031834' => 'stu', 'PGSC0003DMG401028300' => 'stu', 'PGSC0003DMG402028300' => 'stu', 'Phvul.001G219300' => 'pvu', 'Phvul.007G056000' => 'pvu', 'Phvul.007G208000' => 'pvu', 'Phvul.008G119500' => 'pvu', 'Phvul.010G011200' => 'pvu', 'Phvul.010G014800' => 'pvu', 'Phvul.011G062900' => 'pvu', 'Phvul.L007043' => 'pvu', 'Potri.001G242300' => 'ptr', 'Potri.002G185300' => 'ptr', 'Potri.006G086900' => 'ptr', 'Potri.008G151700' => 'ptr', 'Potri.009G033500' => 'ptr', 'Potri.010G089300' => 'ptr', 'Potri.014G110800' => 'ptr', 'Pp3c27_8130' => 'ppa', 'Pp3c6_27410' => 'ppa', 'PRCOL_00001659' => 'pco', 'PRCOL_00001927' => 'pco', 'PRCOL_00003649' => 'pco', 'Prupe.1G011600' => 'ppe', 'Prupe.3G000800' => 'ppe', 'Prupe.3G001100' => 'ppe', 'Prupe.6G072700' => 'ppe', 'Prupe.6G072800' => 'ppe', 'Prupe.6G257300' => 'ppe', 'Prupe.8G033000' => 'ppe', 'Psat0s2633g0080' => 'psa', 'Psat0s3396g0080' => 'psa', 'Psat0s3396g0200' => 'psa', 'Psat3g139080' => 'psa', 'Psat5g285080' => 'psa', 'Psat6g157760' => 'psa', 'Psat6g208440' => 'psa', 'Psat7g215320' => 'psa', 'Psat7g215400' => 'psa', 'Psat7g235600' => 'psa', 'Psat7g235760' => 'psa', 'PSO063G4603' => 'pso', 'PSO210G0182' => 'pso', 'PSO210G0196' => 'pso', 'PSO339G0394' => 'pso', 'PSO339G4127' => 'pso', 'PSO513G0064' => 'pso', 'PSO761G0079' => 'pso', 'QL01p031003' => 'qlo', 'QL01p031078' => 'qlo', 'QL06p003004' => 'qlo', 'QL07p048731' => 'qlo', 'QL09p037427' => 'qlo', 'RcHm_v2.0_Chr3g0466361' => 'rch', 'RcHm_v2.0_Chr3g0485571' => 'rch', 'RcHm_v2.0_Chr4g0416551' => 'rch', 'RcHm_v2.0_Chr5g0065831' => 'rch', 'Rhsim01G0230500' => 'rsi', 'Rhsim05G0194000' => 'rsi', 'Rhsim08G0250400' => 'rsi', 'Sabra02G0131000' => 'sbr', 'Sabra06G0066300' => 'sbr', 'Sabra08G0115500' => 'sbr', 'Sabra09G0023900' => 'sbr', 'Sabra10G0054000' => 'sbr', 'Sabra14G0081500' => 'sbr', 'Sabra16G0147100' => 'sbr', 'SalBow2G2957' => 'sbo', 'SalBow4G3320' => 'sbo', 'SalBow8G1894' => 'sbo', 'Sc07g0007950' => 'sci', 'Sc12g0001360' => 'sci', 'Sc13g0004330' => 'sci', 'Sc20g0005010' => 'sci', 'Sed0000361' => 'sed', 'Sed0001706' => 'sed', 'Sed0002422' => 'sed', 'Sed0004029' => 'sed', 'Sed0004602' => 'sed', 'Sed0004943' => 'sed', 'Sed0008646' => 'sed', 'Sed0023313' => 'sed', 'Sed0024843' => 'sed', 'SEGI_00081' => 'sgi', 'SEGI_00947' => 'sgi', 'SEGI_04046' => 'sgi', 'SEGI_06880' => 'sgi', 'SEGI_09736' => 'sgi', 'SEGI_12741' => 'sgi', 'SEGI_14530' => 'sgi', 'SEGI_20705' => 'sgi', 'SEGI_26088' => 'sgi', 'SEGI_28323' => 'sgi', 'SEGI_33343' => 'sgi', 'SGA_v2.0_scaffold126G33775' => 'sas', 'SGA_v2.0_scaffold2G01337' => 'sas', 'SGA_v2.0_scaffold38G15006' => 'sas', 'SGA_v2.0_scaffold39G15264' => 'sas', 'SGA_v2.0_scaffold453G51880' => 'sas', 'SHI12696' => 'shi', 'SMO367G1096' => 'smo', 'Solyc01g068630.3' => 'sly', 'Solyc05g011880.3' => 'sly', 'Solyc06g076300.3' => 'sly', 'Solyc09g010940.4' => 'sly', 'Solyc09g075890.3' => 'sly', 'Sopen01g030560' => 'spe', 'Sopen05g006630' => 'spe', 'Sopen06g032720' => 'spe', 'Sopen09g005660' => 'spe', 'Sopen09g030690' => 'spe', 'Sp4g14540' => 'spa', 'Sp4g20030' => 'spa', 'Sp5g01320' => 'spa', 'Sp6g21170' => 'spa', 'Sp6g21180' => 'spa', 'Sp6g21190' => 'spa', 'Sp6g40220' => 'spa', 'TAR362G0122' => 'tar', 'TAR362G1338' => 'tar', 'TAR369G0590' => 'tar', 'TAR371G0824' => 'tar', 'TAR622G1429' => 'tar', 'TAR623G0734' => 'tar', 'TAR625G0441' => 'tar', 'TAR629G0976' => 'tar', 'TAR633G1195' => 'tar', 'TAR636G2660' => 'tar', 'THA.LOC104799440' => 'tha', 'THA.LOC104800966' => 'tha', 'THA.LOC104806559' => 'tha', 'THA.LOC104810765' => 'tha', 'THA.LOC104816266' => 'tha', 'THA.LOC104817419' => 'tha', 'THA.LOC104827021' => 'tha', 'Thecc.01G327400' => 'tca', 'Thecc.04G229200' => 'tca', 'Thecc.05G037400' => 'tca', 'Thecc.09G318600' => 'tca', 'Thecc.09G318700' => 'tca', 'Thhalv10006238m.g' => 'esa', 'Thhalv10014321m.g' => 'esa', 'Thhalv10014335m.g' => 'esa', 'Thhalv10015826m.g' => 'esa', 'Thhalv10017107m.g' => 'esa', 'Thhalv10017180m.g' => 'esa', 'Thhalv10029339m.g' => 'esa', 'TPR.G1699' => 'tpr', 'TPR.G23609' => 'tpr', 'TPR.G3081' => 'tpr', 'TPR.G40397' => 'tpr', 'TPR.G5522' => 'tpr', 'TPR.G5618' => 'tpr', 'TPR.G5626' => 'tpr', 'TWI09G1632' => 'twi', 'TWI23G1230' => 'twi', 'TWI53G1064' => 'twi', 'TWI59G0751' => 'twi', 'TWI74G0947' => 'twi', 'TWI77G0337' => 'twi', 'TWI79G1254' => 'twi', 'unitig_0.g2341' => 'ugi', 'unitig_26.g10006' => 'ugi', 'unitig_26.g10008' => 'ugi', 'unitig_26.g9192' => 'ugi', 'vmacro14547' => 'vma', 'vmacro15333' => 'vma', 'vmacro18743' => 'vma', 'vmacro20166' => 'vma', 'VMungo0331G0523' => 'vmu', 'VMungo0331G1202' => 'vmu', 'VMungo0720G1228' => 'vmu', 'VMungo0720G1514' => 'vmu', 'VMungo1080G0169' => 'vmu', 'VMungo1127G1475' => 'vmu', 'VMungo1383G1208' => 'vmu', 'VMungo1383G1698' => 'vmu', 'Zm00001eb012270' => 'zma', 'Zm00001eb054100' => 'zma', 'Zm00001eb063350' => 'zma', 'Zm00001eb328560' => 'zma', 'Zm00001eb342820' => 'zma', 'Zm00001eb362210' => 'zma', 'Zm00001eb397730' => 'zma', 'Zm00001eb399750' => 'zma' ), 'gf_id' => 'HOM05D000959', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000959' ), 'data_identifier' => 'HOM05D000959', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000959', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '622', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p07100' => 'bna', 'A03p11720' => 'bna', 'A05p08300' => 'bna', 'A05p13380' => 'bna', 'A09p54130' => 'bna', 'A10p16690' => 'bna', 'A10p16700' => 'bna', 'A10p33390' => 'bna', 'Aa31LG10G16020' => 'aar', 'Aa31LG1G11810' => 'aar', 'Aa31LG1G11830' => 'aar', 'Aa31LG1G22510' => 'aar', 'Aa31LG5G4890' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5793' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2310' => 'aag', 'Actinidia08499' => 'ach', 'Actinidia11262' => 'ach', 'Actinidia23926' => 'ach', 'Actinidia34420' => 'ach', 'Actinidia36970' => 'ach', 'Ah.02g111220' => 'amhyb', 'Ah.15g097750' => 'amhyb', 'AL4G27500' => 'aly', 'AL6G11470' => 'aly', 'AL8G35950' => 'aly', 'AL8G35960' => 'aly', 'AL8G35970' => 'aly', 'Aqoxy1G00912' => 'aox', 'Aqoxy2G02253' => 'aox', 'Aqoxy2G02411' => 'aox', 'Aqoxy5G00485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BZ66YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K8ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM4FUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6BF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HFV7XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25JBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0YNNV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MAKK6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P70IT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP2Z6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V61LZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YWP64R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3S9AI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7PGHH' => 'arhy', 'AT2G32150' => 'ath', 'AT3G62040' => 'ath', 'AT5G02230' => 'ath', 'AT5G59480' => 'ath', 'AT5G59490' => 'ath', 'ATR0332G060' => 'atr', 'ATR0559G190' => 'atr', 'ATR0693G294' => 'atr', 'Atru.chr3.3975' => 'acertr', 'Atru.chr3.3976' => 'acertr', 'Atru.chr3.3977' => 'acertr', 'Atru.chr4.2498' => 'acertr', 'Atru.chr5.838' => 'acertr', 'Atru.chr8.1990' => 'acertr', 'Atru.chr8.1991' => 'acertr', 'Atru.chr8.1992' => 'acertr', 'AUR62001759' => 'cqu', 'AUR62009545' => 'cqu', 'AUR62010474' => 'cqu', 'AUR62025820' => 'cqu', 'AUR62030422' => 'cqu', 'AUR62033605' => 'cqu', 'AUR62038615' => 'cqu', 'AUR62041347' => 'cqu', 'BcaB01g04574' => 'bca', 'BcaB02g09263' => 'bca', 'BcaB02g10453' => 'bca', 'BcaB05g22513' => 'bca', 'BcaB08g36253' => 'bca', 'BcaB08g36254' => 'bca', 'BcaC01g06519' => 'bca', 'BcaC02g11889' => 'bca', 'BcaC03g14010' => 'bca', 'BcaC03g18439' => 'bca', 'BcaC04g19765' => 'bca', 'BcaC09g48432' => 'bca', 'BcaNung07302' => 'bca', 'BolC2t06040H' => 'bol', 'BolC2t07346H' => 'bol', 'BolC3t13817H' => 'bol', 'BolC4t22625H' => 'bol', 'BolC4t23297H' => 'bol', 'BolC8t51278H' => 'bol', 'BolC9t58050H' => 'bol', 'BolC9t58051H' => 'bol', 'BolC9t60163H' => 'bol', 'BraA02t04712Z' => 'bra', 'BraA02t05791Z' => 'bra', 'BraA03t10483Z' => 'bra', 'BraA05t19795Z' => 'bra', 'BraA05t20276Z' => 'bra', 'BraA09t40827Z' => 'bra', 'BraA10t43750Z' => 'bra', 'BraA10t43751Z' => 'bra', 'BraA10t45370Z' => 'bra', 'C02p00400' => 'bna', 'C02p12460' => 'bna', 'C03p13680' => 'bna', 'C04p10270' => 'bna', 'C04p17500' => 'bna', 'C08p37010' => 'bna', 'C09p51880' => 'bna', 'C09p51890' => 'bna', 'C09p74300' => 'bna', 'CAN.G179.26' => 'can', 'CAN.G3384.1' => 'can', 'CAN.G394.68' => 'can', 'CAN.G907.13' => 'can', 'CANSAT11G0012' => 'cansat', 'CANSAT25G1586' => 'cansat', 'CANSAT35G0735' => 'cansat', 'CANSAT54G0556' => 'cansat', 'CANSAT64G0356' => 'cansat', 'CANSAT78G2042' => 'cansat', 'CARHR125920' => 'chi', 'CARHR131910' => 'chi', 'CARHR172390' => 'chi', 'CARHR211140' => 'chi', 'CARHR285850' => 'chi', 'CARHR285860' => 'chi', 'Carub.0004s1347' => 'cru', 'Carub.0004s1960' => 'cru', 'Carub.0005s2880' => 'cru', 'Carub.0006s0107' => 'cru', 'Carub.0008s2015' => 'cru', 'Carub.0008s2016' => 'cru', 'Carub.0008s2017' => 'cru', 'Ca_01315_v3' => 'car', 'Ca_05063_v3' => 'car', 'Ca_10231_v3' => 'car', 'Ca_10913_v3' => 'car', 'Ca_19156_v3' => 'car', 'Ca_23644_v3' => 'car', 'Ca_26735_v3' => 'car', 'Cc01_g13130' => 'ccan', 'Cc02_g21690' => 'ccan', 'Cc03_g03600' => 'ccan', 'Cc06_g02510' => 'ccan', 'CDE02G1265' => 'cde', 'CDE05G0415' => 'cde', 'CDE08G1082' => 'cde', 'Cfa005780' => 'cfa', 'Cfa011522' => 'cfa', 'Cfa011523' => 'cfa', 'Cfa015627' => 'cfa', 'Cfa017359' => 'cfa', 'Ciclev10005687m.g' => 'ccl', 'Ciclev10012173m.g' => 'ccl', 'Ciclev10021621m.g' => 'ccl', 'Ciclev10028968m.g' => 'ccl', 'Ciclev10029907m.g' => 'ccl', 'CiPaw.01G164800' => 'cil', 'CiPaw.07G083700' => 'cil', 'CiPaw.07G127000' => 'cil', 'CiPaw.07G136900' => 'cil', 'CiPaw.08G081700' => 'cil', 'CiPaw.09G194600' => 'cil', 'CiPaw.10G146500' => 'cil', 'CiPaw.13G091500' => 'cil', 'CiPaw.13G091600' => 'cil', 'ClCG00G003390' => 'cla', 'ClCG01G007220' => 'cla', 'ClCG03G001370' => 'cla', 'ClCG04G008100' => 'cla', 'ClCG06G006110' => 'cla', 'ClCG06G006130' => 'cla', 'ClCG10G021210' => 'cla', 'COL.COLO4_07648' => 'col', 'COL.COLO4_07650' => 'col', 'COL.COLO4_07651' => 'col', 'COL.COLO4_14780' => 'col', 'COL.COLO4_18546' => 'col', 'COL.COLO4_18547' => 'col', 'COL.COLO4_23103' => 'col', 'COL.COLO4_30419' => 'col', 'COL.COLO4_34232' => 'col', 'Cpa.g.sc169.20' => 'cpa', 'Cpa.g.sc57.45' => 'cpa', 'Cpa.g.sc58.124' => 'cpa', 'Cpa.g.sc58.125' => 'cpa', 'Cpa.g.sc81.118' => 'cpa', 'Cpa.g.sc81.119' => 'cpa', 'Cre12.g524700' => 'cre', 'CsaV3_1G034430' => 'csa', 'CsaV3_1G034440' => 'csa', 'CsaV3_1G034450' => 'csa', 'CsaV3_3G034830' => 'csa', 'CsaV3_4G025090' => 'csa', 'CsaV3_5G018660' => 'csa', 'CsaV3_6G038160' => 'csa', 'CSS0003447' => 'camsi', 'CSS0017840' => 'camsi', 'CSS0019260' => 'camsi', 'CSS0040375' => 'camsi', 'CSS0042533' => 'camsi', 'DCAR_005960' => 'dca', 'DCAR_012104' => 'dca', 'DCAR_012105' => 'dca', 'DCAR_012293' => 'dca', 'DCAR_015632' => 'dca', 'DCAR_024602' => 'dca', 'DCAR_028752' => 'dca', 'Dinv06261' => 'din', 'Dinv13982' => 'din', 'Dinv17029' => 'din', 'Dinv18463' => 'din', 'Dinv33181' => 'din', 'Dinv35585' => 'din', 'Dinv37161' => 'din', 'Dinv42977' => 'din', 'Dinv43122' => 'din', 'Dinv44517' => 'din', 'Duzib093G0256' => 'dzi', 'Duzib106G1254' => 'dzi', 'Duzib128G1789' => 'dzi', 'Duzib133G0633' => 'dzi', 'Duzib138G0510' => 'dzi', 'Duzib150G1084' => 'dzi', 'Duzib168G0488' => 'dzi', 'Duzib168G1523' => 'dzi', 'Duzib170G0133' => 'dzi', 'ECA234G1433' => 'eca', 'ECA236G1432' => 'eca', 'ECA236G2256' => 'eca', 'ECA236G2365' => 'eca', 'ECA236G4830' => 'eca', 'ECA248G1505' => 'eca', 'EL10Ac3g06431' => 'bvu', 'EL10Ac5g12577' => 'bvu', 'EL10Ac6g13533' => 'bvu', 'EL10Ac7g16045' => 'bvu', 'Eucgr.A01281' => 'egr', 'Eucgr.B02326' => 'egr', 'Eucgr.H03532' => 'egr', 'Eucgr.K00553' => 'egr', 'Eucgr.K03116' => 'egr', 'FAN02G3963' => 'fan', 'FAN05G0438' => 'fan', 'FAN09G2434' => 'fan', 'FAN12G3984' => 'fan', 'FAN14G0798' => 'fan', 'FAN17G0652' => 'fan', 'FAN19G1988' => 'fan', 'FAN22G0632' => 'fan', 'FAN23G0387' => 'fan', 'FAN26G1323' => 'fan', 'FAN28G0666' => 'fan', 'FvH4_1g26080' => 'fve', 'FvH4_3g36780' => 'fve', 'FvH4_4g15270' => 'fve', 'FvH4_6g13490' => 'fve', 'Glyma.01G098700' => 'gma', 'Glyma.03G065900' => 'gma', 'Glyma.03G073754' => 'gma', 'Glyma.03G073758' => 'gma', 'Glyma.03G083200' => 'gma', 'Glyma.03G225500' => 'gma', 'Glyma.05G037766' => 'gma', 'Glyma.07G133500' => 'gma', 'Glyma.10G139400' => 'gma', 'Glyma.10G248900' => 'gma', 'Glyma.11G137800' => 'gma', 'Glyma.12G061300' => 'gma', 'Glyma.13G337900' => 'gma', 'Glyma.15G036600' => 'gma', 'Glyma.18G182800' => 'gma', 'Glyma.19G222500' => 'gma', 'Glyma.20G144800' => 'gma', 'Gohir.A01G222000' => 'ghi', 'Gohir.A03G044000' => 'ghi', 'Gohir.A03G044100' => 'ghi', 'Gohir.A04G083100' => 'ghi', 'Gohir.A07G127200' => 'ghi', 'Gohir.A07G132400' => 'ghi', 'Gohir.A08G000700' => 'ghi', 'Gohir.A11G327300' => 'ghi', 'Gohir.D01G211500' => 'ghi', 'Gohir.D03G123400' => 'ghi', 'Gohir.D03G123500' => 'ghi', 'Gohir.D04G121800' => 'ghi', 'Gohir.D07G131500' => 'ghi', 'Gohir.D07G136600' => 'ghi', 'Gohir.D08G011600' => 'ghi', 'Gohir.D11G346200' => 'ghi', 'Gorai.001G142800' => 'gra', 'Gorai.001G148700' => 'gra', 'Gorai.002G257300' => 'gra', 'Gorai.003G130000' => 'gra', 'Gorai.003G130100' => 'gra', 'Gorai.004G005300' => 'gra', 'Gorai.007G376500' => 'gra', 'Gorai.012G104700' => 'gra', 'GSVIVG01017946001' => 'vvi', 'GSVIVG01024928001' => 'vvi', 'GSVIVG01028227001' => 'vvi', 'GSVIVG01034151001' => 'vvi', 'HanXRQChr05g0135031' => 'han', 'HanXRQChr05g0135041' => 'han', 'HanXRQChr05g0140021' => 'han', 'HanXRQChr06g0178981' => 'han', 'HanXRQChr07g0188251' => 'han', 'HanXRQChr08g0235311' => 'han', 'HanXRQChr09g0271011' => 'han', 'HanXRQChr10g0293321' => 'han', 'HanXRQChr13g0388171' => 'han', 'Haze_00916' => 'cav', 'Haze_05063' => 'cav', 'Haze_20814' => 'cav', 'Haze_24128' => 'cav', 'Hma1.2p1_0745F.1_g212010' => 'hma', 'Hma1.2p1_0757F.1_g213260' => 'hma', 'Hma1.2p1_0936F.1_g238840' => 'hma', 'Hma1.2p1_1735F.1_g299890' => 'hma', 'Hma1.2p1_1861F.1_g305685' => 'hma', 'HPP92_003397' => 'vpl', 'HPP92_012597' => 'vpl', 'HPP92_015520' => 'vpl', 'HPP92_015539' => 'vpl', 'HPP92_020373' => 'vpl', 'Hund04938' => 'sun', 'Hund10677' => 'sun', 'Hund11033' => 'sun', 'Hund12155' => 'sun', 'Lalb_Chr01g0022551' => 'lal', 'Lalb_Chr03g0042341' => 'lal', 'Lalb_Chr07g0192931' => 'lal', 'Lalb_Chr12g0209551' => 'lal', 'Lalb_Chr19g0125251' => 'lal', 'Lalb_Chr19g0137891' => 'lal', 'Lalb_Chr21g0304641' => 'lal', 'Lalb_Chr21g0309881' => 'lal', 'Lj1A5T12' => 'lonja', 'Lj1C148G10' => 'lonja', 'Lj2A93T83' => 'lonja', 'Lj3A738G68' => 'lonja', 'Lj3C966T1' => 'lonja', 'Lj3g0018958' => 'lja', 'Lj3g0021831' => 'lja', 'Lj3g0025443' => 'lja', 'Lj4g0026809' => 'lja', 'Lj5g0012558' => 'lja', 'Lj5g0021586' => 'lja', 'Lsat_1_v5_gn_5_156840' => 'lsa', 'Lsat_1_v5_gn_8_73460' => 'lsa', 'Lsat_1_v5_gn_8_73481' => 'lsa', 'Lsat_1_v5_gn_9_31601' => 'lsa', 'Lsat_1_v5_gn_9_77320' => 'lsa', 'Manes.01G171300' => 'mes', 'Manes.01G171400' => 'mes', 'Manes.01G236100' => 'mes', 'Manes.02G130500' => 'mes', 'Manes.02G130600' => 'mes', 'Manes.03G180200' => 'mes', 'Manes.05G007000' => 'mes', 'Manes.08G084400' => 'mes', 'Manes.09G092600' => 'mes', 'Manes.15G027900' => 'mes', 'MBI04_g40948_MAGBIO' => 'mbi', 'MBI14_g12123_MAGBIO' => 'mbi', 'MBI18_g28915_MAGBIO' => 'mbi', 'MCO09G053' => 'mco', 'MCO11G782' => 'mco', 'MCO15G215' => 'mco', 'MD03G1088500' => 'mdo', 'MD03G1088600' => 'mdo', 'MD04G1130800' => 'mdo', 'MD09G1291700' => 'mdo', 'MD11G1097500' => 'mdo', 'MD11G1097600' => 'mdo', 'MD12G1143900' => 'mdo', 'MD13G1191400' => 'mdo', 'MD16G1191500' => 'mdo', 'Medtr1g085570' => 'mtr', 'Medtr1g104610' => 'mtr', 'Medtr2g097520' => 'mtr', 'Medtr4g021800' => 'mtr', 'Medtr4g021825' => 'mtr', 'Medtr4g064270' => 'mtr', 'Medtr4g064380' => 'mtr', 'Medtr7g062150' => 'mtr', 'MELO3C003138.2' => 'cme', 'MELO3C005187.2' => 'cme', 'MELO3C009252.2' => 'cme', 'MELO3C014481.2' => 'cme', 'MELO3C020616.2' => 'cme', 'MELO3C020617.2' => 'cme', 'MELO3C020618.2' => 'cme', 'Migut.G00328' => 'egut', 'Migut.J00320' => 'egut', 'Migut.L01000' => 'egut', 'Migut.L01953' => 'egut', 'MSTRG.10253' => 'ama', 'MSTRG.19077' => 'ama', 'MSTRG.26780' => 'ama', 'MSTRG.4023' => 'ama', 'MSTRG.5655' => 'ama', 'MSTRG.9992' => 'ama', 'Nitab4.5_0000043g0310' => 'nta', 'Nitab4.5_0000463g0080' => 'nta', 'Nitab4.5_0000705g0170' => 'nta', 'Nitab4.5_0001326g0060' => 'nta', 'Nitab4.5_0001628g0030' => 'nta', 'Nitab4.5_0002103g0110' => 'nta', 'Nitab4.5_0002946g0030' => 'nta', 'Nitab4.5_0004639g0030' => 'nta', 'Nn2g11149' => 'nnu', 'Nn2g13389' => 'nnu', 'Nn4g25326' => 'nnu', 'Nn4g26290' => 'nnu', 'Nn5g29865' => 'nnu', 'Oeu004163.1' => 'oeu', 'Oeu006901.1' => 'oeu', 'Oeu010096.1' => 'oeu', 'Oeu024340.1' => 'oeu', 'Oeu048369.1' => 'oeu', 'Os01g0973000' => 'osa', 'Os03g0273800' => 'osa', 'Os03g0701200' => 'osa', 'Os03g0834050' => 'osa', 'Os07g0634400' => 'osa', 'Peaxi162Scf00092g01414' => 'pax', 'Peaxi162Scf00165g00818' => 'pax', 'Peaxi162Scf00309g00516' => 'pax', 'Peaxi162Scf00774g00218' => 'pax', 'PGR004G1824' => 'pgr', 'PGR004G2606' => 'pgr', 'PGR031G2716' => 'pgr', 'PGR102G2460' => 'pgr', 'PGR142G2599' => 'pgr', 'PGSC0003DMG400000843' => 'stu', 'PGSC0003DMG400008829' => 'stu', 'PGSC0003DMG400030418' => 'stu', 'PGSC0003DMG400031834' => 'stu', 'PGSC0003DMG401028300' => 'stu', 'PGSC0003DMG402028300' => 'stu', 'Phvul.001G219300' => 'pvu', 'Phvul.007G056000' => 'pvu', 'Phvul.007G208000' => 'pvu', 'Phvul.008G119500' => 'pvu', 'Phvul.010G011200' => 'pvu', 'Phvul.010G014800' => 'pvu', 'Phvul.011G062900' => 'pvu', 'Phvul.L007043' => 'pvu', 'Potri.001G242300' => 'ptr', 'Potri.002G185300' => 'ptr', 'Potri.006G086900' => 'ptr', 'Potri.008G151700' => 'ptr', 'Potri.009G033500' => 'ptr', 'Potri.010G089300' => 'ptr', 'Potri.014G110800' => 'ptr', 'Pp3c27_8130' => 'ppa', 'Pp3c6_27410' => 'ppa', 'PRCOL_00001659' => 'pco', 'PRCOL_00001927' => 'pco', 'PRCOL_00003649' => 'pco', 'Prupe.1G011600' => 'ppe', 'Prupe.3G000800' => 'ppe', 'Prupe.3G001100' => 'ppe', 'Prupe.6G072700' => 'ppe', 'Prupe.6G072800' => 'ppe', 'Prupe.6G257300' => 'ppe', 'Prupe.8G033000' => 'ppe', 'Psat0s2633g0080' => 'psa', 'Psat0s3396g0080' => 'psa', 'Psat0s3396g0200' => 'psa', 'Psat3g139080' => 'psa', 'Psat5g285080' => 'psa', 'Psat6g157760' => 'psa', 'Psat6g208440' => 'psa', 'Psat7g215320' => 'psa', 'Psat7g215400' => 'psa', 'Psat7g235600' => 'psa', 'Psat7g235760' => 'psa', 'PSO063G4603' => 'pso', 'PSO210G0182' => 'pso', 'PSO210G0196' => 'pso', 'PSO339G0394' => 'pso', 'PSO339G4127' => 'pso', 'PSO513G0064' => 'pso', 'PSO761G0079' => 'pso', 'QL01p031003' => 'qlo', 'QL01p031078' => 'qlo', 'QL06p003004' => 'qlo', 'QL07p048731' => 'qlo', 'QL09p037427' => 'qlo', 'RcHm_v2.0_Chr3g0466361' => 'rch', 'RcHm_v2.0_Chr3g0485571' => 'rch', 'RcHm_v2.0_Chr4g0416551' => 'rch', 'RcHm_v2.0_Chr5g0065831' => 'rch', 'Rhsim01G0230500' => 'rsi', 'Rhsim05G0194000' => 'rsi', 'Rhsim08G0250400' => 'rsi', 'Sabra02G0131000' => 'sbr', 'Sabra06G0066300' => 'sbr', 'Sabra08G0115500' => 'sbr', 'Sabra09G0023900' => 'sbr', 'Sabra10G0054000' => 'sbr', 'Sabra14G0081500' => 'sbr', 'Sabra16G0147100' => 'sbr', 'SalBow2G2957' => 'sbo', 'SalBow4G3320' => 'sbo', 'SalBow8G1894' => 'sbo', 'Sc07g0007950' => 'sci', 'Sc12g0001360' => 'sci', 'Sc13g0004330' => 'sci', 'Sc20g0005010' => 'sci', 'Sed0000361' => 'sed', 'Sed0001706' => 'sed', 'Sed0002422' => 'sed', 'Sed0004029' => 'sed', 'Sed0004602' => 'sed', 'Sed0004943' => 'sed', 'Sed0008646' => 'sed', 'Sed0023313' => 'sed', 'Sed0024843' => 'sed', 'SEGI_00081' => 'sgi', 'SEGI_00947' => 'sgi', 'SEGI_04046' => 'sgi', 'SEGI_06880' => 'sgi', 'SEGI_09736' => 'sgi', 'SEGI_12741' => 'sgi', 'SEGI_14530' => 'sgi', 'SEGI_20705' => 'sgi', 'SEGI_26088' => 'sgi', 'SEGI_28323' => 'sgi', 'SEGI_33343' => 'sgi', 'SGA_v2.0_scaffold126G33775' => 'sas', 'SGA_v2.0_scaffold2G01337' => 'sas', 'SGA_v2.0_scaffold38G15006' => 'sas', 'SGA_v2.0_scaffold39G15264' => 'sas', 'SGA_v2.0_scaffold453G51880' => 'sas', 'SHI12696' => 'shi', 'SMO367G1096' => 'smo', 'Solyc01g068630.3' => 'sly', 'Solyc05g011880.3' => 'sly', 'Solyc06g076300.3' => 'sly', 'Solyc09g010940.4' => 'sly', 'Solyc09g075890.3' => 'sly', 'Sopen01g030560' => 'spe', 'Sopen05g006630' => 'spe', 'Sopen06g032720' => 'spe', 'Sopen09g005660' => 'spe', 'Sopen09g030690' => 'spe', 'Sp4g14540' => 'spa', 'Sp4g20030' => 'spa', 'Sp5g01320' => 'spa', 'Sp6g21170' => 'spa', 'Sp6g21180' => 'spa', 'Sp6g21190' => 'spa', 'Sp6g40220' => 'spa', 'TAR362G0122' => 'tar', 'TAR362G1338' => 'tar', 'TAR369G0590' => 'tar', 'TAR371G0824' => 'tar', 'TAR622G1429' => 'tar', 'TAR623G0734' => 'tar', 'TAR625G0441' => 'tar', 'TAR629G0976' => 'tar', 'TAR633G1195' => 'tar', 'TAR636G2660' => 'tar', 'THA.LOC104799440' => 'tha', 'THA.LOC104800966' => 'tha', 'THA.LOC104806559' => 'tha', 'THA.LOC104810765' => 'tha', 'THA.LOC104816266' => 'tha', 'THA.LOC104817419' => 'tha', 'THA.LOC104827021' => 'tha', 'Thecc.01G327400' => 'tca', 'Thecc.04G229200' => 'tca', 'Thecc.05G037400' => 'tca', 'Thecc.09G318600' => 'tca', 'Thecc.09G318700' => 'tca', 'Thhalv10006238m.g' => 'esa', 'Thhalv10014321m.g' => 'esa', 'Thhalv10014335m.g' => 'esa', 'Thhalv10015826m.g' => 'esa', 'Thhalv10017107m.g' => 'esa', 'Thhalv10017180m.g' => 'esa', 'Thhalv10029339m.g' => 'esa', 'TPR.G1699' => 'tpr', 'TPR.G23609' => 'tpr', 'TPR.G3081' => 'tpr', 'TPR.G40397' => 'tpr', 'TPR.G5522' => 'tpr', 'TPR.G5618' => 'tpr', 'TPR.G5626' => 'tpr', 'TWI09G1632' => 'twi', 'TWI23G1230' => 'twi', 'TWI53G1064' => 'twi', 'TWI59G0751' => 'twi', 'TWI74G0947' => 'twi', 'TWI77G0337' => 'twi', 'TWI79G1254' => 'twi', 'unitig_0.g2341' => 'ugi', 'unitig_26.g10006' => 'ugi', 'unitig_26.g10008' => 'ugi', 'unitig_26.g9192' => 'ugi', 'vmacro14547' => 'vma', 'vmacro15333' => 'vma', 'vmacro18743' => 'vma', 'vmacro20166' => 'vma', 'VMungo0331G0523' => 'vmu', 'VMungo0331G1202' => 'vmu', 'VMungo0720G1228' => 'vmu', 'VMungo0720G1514' => 'vmu', 'VMungo1080G0169' => 'vmu', 'VMungo1127G1475' => 'vmu', 'VMungo1383G1208' => 'vmu', 'VMungo1383G1698' => 'vmu', 'Zm00001eb012270' => 'zma', 'Zm00001eb054100' => 'zma', 'Zm00001eb063350' => 'zma', 'Zm00001eb328560' => 'zma', 'Zm00001eb342820' => 'zma', 'Zm00001eb362210' => 'zma', 'Zm00001eb397730' => 'zma', 'Zm00001eb399750' => 'zma' ) $gf_id = 'HOM05D000959' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000959' ) $data_identifier = 'HOM05D000959' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 5, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 5, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 10, 'mbi' => (int) 3, 'mco' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 2, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 3, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 11, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399750' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000959', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '622', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p07100' => 'bna', 'A03p11720' => 'bna', 'A05p08300' => 'bna', 'A05p13380' => 'bna', 'A09p54130' => 'bna', 'A10p16690' => 'bna', 'A10p16700' => 'bna', 'A10p33390' => 'bna', 'Aa31LG10G16020' => 'aar', 'Aa31LG1G11810' => 'aar', 'Aa31LG1G11830' => 'aar', 'Aa31LG1G22510' => 'aar', 'Aa31LG5G4890' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5793' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2310' => 'aag', 'Actinidia08499' => 'ach', 'Actinidia11262' => 'ach', 'Actinidia23926' => 'ach', 'Actinidia34420' => 'ach', 'Actinidia36970' => 'ach', 'Ah.02g111220' => 'amhyb', 'Ah.15g097750' => 'amhyb', 'AL4G27500' => 'aly', 'AL6G11470' => 'aly', 'AL8G35950' => 'aly', 'AL8G35960' => 'aly', 'AL8G35970' => 'aly', 'Aqoxy1G00912' => 'aox', 'Aqoxy2G02253' => 'aox', 'Aqoxy2G02411' => 'aox', 'Aqoxy5G00485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BZ66YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K8ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM4FUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6BF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HFV7XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25JBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0YNNV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MAKK6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P70IT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP2Z6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V61LZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YWP64R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3S9AI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7PGHH' => 'arhy', 'AT2G32150' => 'ath', 'AT3G62040' => 'ath', 'AT5G02230' => 'ath', 'AT5G59480' => 'ath', 'AT5G59490' => 'ath', 'ATR0332G060' => 'atr', 'ATR0559G190' => 'atr', 'ATR0693G294' => 'atr', 'Atru.chr3.3975' => 'acertr', 'Atru.chr3.3976' => 'acertr', 'Atru.chr3.3977' => 'acertr', 'Atru.chr4.2498' => 'acertr', 'Atru.chr5.838' => 'acertr', 'Atru.chr8.1990' => 'acertr', 'Atru.chr8.1991' => 'acertr', 'Atru.chr8.1992' => 'acertr', 'AUR62001759' => 'cqu', 'AUR62009545' => 'cqu', 'AUR62010474' => 'cqu', 'AUR62025820' => 'cqu', 'AUR62030422' => 'cqu', 'AUR62033605' => 'cqu', 'AUR62038615' => 'cqu', 'AUR62041347' => 'cqu', 'BcaB01g04574' => 'bca', 'BcaB02g09263' => 'bca', 'BcaB02g10453' => 'bca', 'BcaB05g22513' => 'bca', 'BcaB08g36253' => 'bca', 'BcaB08g36254' => 'bca', 'BcaC01g06519' => 'bca', 'BcaC02g11889' => 'bca', 'BcaC03g14010' => 'bca', 'BcaC03g18439' => 'bca', 'BcaC04g19765' => 'bca', 'BcaC09g48432' => 'bca', 'BcaNung07302' => 'bca', 'BolC2t06040H' => 'bol', 'BolC2t07346H' => 'bol', 'BolC3t13817H' => 'bol', 'BolC4t22625H' => 'bol', 'BolC4t23297H' => 'bol', 'BolC8t51278H' => 'bol', 'BolC9t58050H' => 'bol', 'BolC9t58051H' => 'bol', 'BolC9t60163H' => 'bol', 'BraA02t04712Z' => 'bra', 'BraA02t05791Z' => 'bra', 'BraA03t10483Z' => 'bra', 'BraA05t19795Z' => 'bra', 'BraA05t20276Z' => 'bra', 'BraA09t40827Z' => 'bra', 'BraA10t43750Z' => 'bra', 'BraA10t43751Z' => 'bra', 'BraA10t45370Z' => 'bra', 'C02p00400' => 'bna', 'C02p12460' => 'bna', 'C03p13680' => 'bna', 'C04p10270' => 'bna', 'C04p17500' => 'bna', 'C08p37010' => 'bna', 'C09p51880' => 'bna', 'C09p51890' => 'bna', 'C09p74300' => 'bna', 'CAN.G179.26' => 'can', 'CAN.G3384.1' => 'can', 'CAN.G394.68' => 'can', 'CAN.G907.13' => 'can', 'CANSAT11G0012' => 'cansat', 'CANSAT25G1586' => 'cansat', 'CANSAT35G0735' => 'cansat', 'CANSAT54G0556' => 'cansat', 'CANSAT64G0356' => 'cansat', 'CANSAT78G2042' => 'cansat', 'CARHR125920' => 'chi', 'CARHR131910' => 'chi', 'CARHR172390' => 'chi', 'CARHR211140' => 'chi', 'CARHR285850' => 'chi', 'CARHR285860' => 'chi', 'Carub.0004s1347' => 'cru', 'Carub.0004s1960' => 'cru', 'Carub.0005s2880' => 'cru', 'Carub.0006s0107' => 'cru', 'Carub.0008s2015' => 'cru', 'Carub.0008s2016' => 'cru', 'Carub.0008s2017' => 'cru', 'Ca_01315_v3' => 'car', 'Ca_05063_v3' => 'car', 'Ca_10231_v3' => 'car', 'Ca_10913_v3' => 'car', 'Ca_19156_v3' => 'car', 'Ca_23644_v3' => 'car', 'Ca_26735_v3' => 'car', 'Cc01_g13130' => 'ccan', 'Cc02_g21690' => 'ccan', 'Cc03_g03600' => 'ccan', 'Cc06_g02510' => 'ccan', 'CDE02G1265' => 'cde', 'CDE05G0415' => 'cde', 'CDE08G1082' => 'cde', 'Cfa005780' => 'cfa', 'Cfa011522' => 'cfa', 'Cfa011523' => 'cfa', 'Cfa015627' => 'cfa', 'Cfa017359' => 'cfa', 'Ciclev10005687m.g' => 'ccl', 'Ciclev10012173m.g' => 'ccl', 'Ciclev10021621m.g' => 'ccl', 'Ciclev10028968m.g' => 'ccl', 'Ciclev10029907m.g' => 'ccl', 'CiPaw.01G164800' => 'cil', 'CiPaw.07G083700' => 'cil', 'CiPaw.07G127000' => 'cil', 'CiPaw.07G136900' => 'cil', 'CiPaw.08G081700' => 'cil', 'CiPaw.09G194600' => 'cil', 'CiPaw.10G146500' => 'cil', 'CiPaw.13G091500' => 'cil', 'CiPaw.13G091600' => 'cil', 'ClCG00G003390' => 'cla', 'ClCG01G007220' => 'cla', 'ClCG03G001370' => 'cla', 'ClCG04G008100' => 'cla', 'ClCG06G006110' => 'cla', 'ClCG06G006130' => 'cla', 'ClCG10G021210' => 'cla', 'COL.COLO4_07648' => 'col', 'COL.COLO4_07650' => 'col', 'COL.COLO4_07651' => 'col', 'COL.COLO4_14780' => 'col', 'COL.COLO4_18546' => 'col', 'COL.COLO4_18547' => 'col', 'COL.COLO4_23103' => 'col', 'COL.COLO4_30419' => 'col', 'COL.COLO4_34232' => 'col', 'Cpa.g.sc169.20' => 'cpa', 'Cpa.g.sc57.45' => 'cpa', 'Cpa.g.sc58.124' => 'cpa', 'Cpa.g.sc58.125' => 'cpa', 'Cpa.g.sc81.118' => 'cpa', 'Cpa.g.sc81.119' => 'cpa', 'Cre12.g524700' => 'cre', 'CsaV3_1G034430' => 'csa', 'CsaV3_1G034440' => 'csa', 'CsaV3_1G034450' => 'csa', 'CsaV3_3G034830' => 'csa', 'CsaV3_4G025090' => 'csa', 'CsaV3_5G018660' => 'csa', 'CsaV3_6G038160' => 'csa', 'CSS0003447' => 'camsi', 'CSS0017840' => 'camsi', 'CSS0019260' => 'camsi', 'CSS0040375' => 'camsi', 'CSS0042533' => 'camsi', 'DCAR_005960' => 'dca', 'DCAR_012104' => 'dca', 'DCAR_012105' => 'dca', 'DCAR_012293' => 'dca', 'DCAR_015632' => 'dca', 'DCAR_024602' => 'dca', 'DCAR_028752' => 'dca', 'Dinv06261' => 'din', 'Dinv13982' => 'din', 'Dinv17029' => 'din', 'Dinv18463' => 'din', 'Dinv33181' => 'din', 'Dinv35585' => 'din', 'Dinv37161' => 'din', 'Dinv42977' => 'din', 'Dinv43122' => 'din', 'Dinv44517' => 'din', 'Duzib093G0256' => 'dzi', 'Duzib106G1254' => 'dzi', 'Duzib128G1789' => 'dzi', 'Duzib133G0633' => 'dzi', 'Duzib138G0510' => 'dzi', 'Duzib150G1084' => 'dzi', 'Duzib168G0488' => 'dzi', 'Duzib168G1523' => 'dzi', 'Duzib170G0133' => 'dzi', 'ECA234G1433' => 'eca', 'ECA236G1432' => 'eca', 'ECA236G2256' => 'eca', 'ECA236G2365' => 'eca', 'ECA236G4830' => 'eca', 'ECA248G1505' => 'eca', 'EL10Ac3g06431' => 'bvu', 'EL10Ac5g12577' => 'bvu', 'EL10Ac6g13533' => 'bvu', 'EL10Ac7g16045' => 'bvu', 'Eucgr.A01281' => 'egr', 'Eucgr.B02326' => 'egr', 'Eucgr.H03532' => 'egr', 'Eucgr.K00553' => 'egr', 'Eucgr.K03116' => 'egr', 'FAN02G3963' => 'fan', 'FAN05G0438' => 'fan', 'FAN09G2434' => 'fan', 'FAN12G3984' => 'fan', 'FAN14G0798' => 'fan', 'FAN17G0652' => 'fan', 'FAN19G1988' => 'fan', 'FAN22G0632' => 'fan', 'FAN23G0387' => 'fan', 'FAN26G1323' => 'fan', 'FAN28G0666' => 'fan', 'FvH4_1g26080' => 'fve', 'FvH4_3g36780' => 'fve', 'FvH4_4g15270' => 'fve', 'FvH4_6g13490' => 'fve', 'Glyma.01G098700' => 'gma', 'Glyma.03G065900' => 'gma', 'Glyma.03G073754' => 'gma', 'Glyma.03G073758' => 'gma', 'Glyma.03G083200' => 'gma', 'Glyma.03G225500' => 'gma', 'Glyma.05G037766' => 'gma', 'Glyma.07G133500' => 'gma', 'Glyma.10G139400' => 'gma', 'Glyma.10G248900' => 'gma', 'Glyma.11G137800' => 'gma', 'Glyma.12G061300' => 'gma', 'Glyma.13G337900' => 'gma', 'Glyma.15G036600' => 'gma', 'Glyma.18G182800' => 'gma', 'Glyma.19G222500' => 'gma', 'Glyma.20G144800' => 'gma', 'Gohir.A01G222000' => 'ghi', 'Gohir.A03G044000' => 'ghi', 'Gohir.A03G044100' => 'ghi', 'Gohir.A04G083100' => 'ghi', 'Gohir.A07G127200' => 'ghi', 'Gohir.A07G132400' => 'ghi', 'Gohir.A08G000700' => 'ghi', 'Gohir.A11G327300' => 'ghi', 'Gohir.D01G211500' => 'ghi', 'Gohir.D03G123400' => 'ghi', 'Gohir.D03G123500' => 'ghi', 'Gohir.D04G121800' => 'ghi', 'Gohir.D07G131500' => 'ghi', 'Gohir.D07G136600' => 'ghi', 'Gohir.D08G011600' => 'ghi', 'Gohir.D11G346200' => 'ghi', 'Gorai.001G142800' => 'gra', 'Gorai.001G148700' => 'gra', 'Gorai.002G257300' => 'gra', 'Gorai.003G130000' => 'gra', 'Gorai.003G130100' => 'gra', 'Gorai.004G005300' => 'gra', 'Gorai.007G376500' => 'gra', 'Gorai.012G104700' => 'gra', 'GSVIVG01017946001' => 'vvi', 'GSVIVG01024928001' => 'vvi', 'GSVIVG01028227001' => 'vvi', 'GSVIVG01034151001' => 'vvi', 'HanXRQChr05g0135031' => 'han', 'HanXRQChr05g0135041' => 'han', 'HanXRQChr05g0140021' => 'han', 'HanXRQChr06g0178981' => 'han', 'HanXRQChr07g0188251' => 'han', 'HanXRQChr08g0235311' => 'han', 'HanXRQChr09g0271011' => 'han', 'HanXRQChr10g0293321' => 'han', 'HanXRQChr13g0388171' => 'han', 'Haze_00916' => 'cav', 'Haze_05063' => 'cav', 'Haze_20814' => 'cav', 'Haze_24128' => 'cav', 'Hma1.2p1_0745F.1_g212010' => 'hma', 'Hma1.2p1_0757F.1_g213260' => 'hma', 'Hma1.2p1_0936F.1_g238840' => 'hma', 'Hma1.2p1_1735F.1_g299890' => 'hma', 'Hma1.2p1_1861F.1_g305685' => 'hma', 'HPP92_003397' => 'vpl', 'HPP92_012597' => 'vpl', 'HPP92_015520' => 'vpl', 'HPP92_015539' => 'vpl', 'HPP92_020373' => 'vpl', 'Hund04938' => 'sun', 'Hund10677' => 'sun', 'Hund11033' => 'sun', 'Hund12155' => 'sun', 'Lalb_Chr01g0022551' => 'lal', 'Lalb_Chr03g0042341' => 'lal', 'Lalb_Chr07g0192931' => 'lal', 'Lalb_Chr12g0209551' => 'lal', 'Lalb_Chr19g0125251' => 'lal', 'Lalb_Chr19g0137891' => 'lal', 'Lalb_Chr21g0304641' => 'lal', 'Lalb_Chr21g0309881' => 'lal', 'Lj1A5T12' => 'lonja', 'Lj1C148G10' => 'lonja', 'Lj2A93T83' => 'lonja', 'Lj3A738G68' => 'lonja', 'Lj3C966T1' => 'lonja', 'Lj3g0018958' => 'lja', 'Lj3g0021831' => 'lja', 'Lj3g0025443' => 'lja', 'Lj4g0026809' => 'lja', 'Lj5g0012558' => 'lja', 'Lj5g0021586' => 'lja', 'Lsat_1_v5_gn_5_156840' => 'lsa', 'Lsat_1_v5_gn_8_73460' => 'lsa', 'Lsat_1_v5_gn_8_73481' => 'lsa', 'Lsat_1_v5_gn_9_31601' => 'lsa', 'Lsat_1_v5_gn_9_77320' => 'lsa', 'Manes.01G171300' => 'mes', 'Manes.01G171400' => 'mes', 'Manes.01G236100' => 'mes', 'Manes.02G130500' => 'mes', 'Manes.02G130600' => 'mes', 'Manes.03G180200' => 'mes', 'Manes.05G007000' => 'mes', 'Manes.08G084400' => 'mes', 'Manes.09G092600' => 'mes', 'Manes.15G027900' => 'mes', 'MBI04_g40948_MAGBIO' => 'mbi', 'MBI14_g12123_MAGBIO' => 'mbi', 'MBI18_g28915_MAGBIO' => 'mbi', 'MCO09G053' => 'mco', 'MCO11G782' => 'mco', 'MCO15G215' => 'mco', 'MD03G1088500' => 'mdo', 'MD03G1088600' => 'mdo', 'MD04G1130800' => 'mdo', 'MD09G1291700' => 'mdo', 'MD11G1097500' => 'mdo', 'MD11G1097600' => 'mdo', 'MD12G1143900' => 'mdo', 'MD13G1191400' => 'mdo', 'MD16G1191500' => 'mdo', 'Medtr1g085570' => 'mtr', 'Medtr1g104610' => 'mtr', 'Medtr2g097520' => 'mtr', 'Medtr4g021800' => 'mtr', 'Medtr4g021825' => 'mtr', 'Medtr4g064270' => 'mtr', 'Medtr4g064380' => 'mtr', 'Medtr7g062150' => 'mtr', 'MELO3C003138.2' => 'cme', 'MELO3C005187.2' => 'cme', 'MELO3C009252.2' => 'cme', 'MELO3C014481.2' => 'cme', 'MELO3C020616.2' => 'cme', 'MELO3C020617.2' => 'cme', 'MELO3C020618.2' => 'cme', 'Migut.G00328' => 'egut', 'Migut.J00320' => 'egut', 'Migut.L01000' => 'egut', 'Migut.L01953' => 'egut', 'MSTRG.10253' => 'ama', 'MSTRG.19077' => 'ama', 'MSTRG.26780' => 'ama', 'MSTRG.4023' => 'ama', 'MSTRG.5655' => 'ama', 'MSTRG.9992' => 'ama', 'Nitab4.5_0000043g0310' => 'nta', 'Nitab4.5_0000463g0080' => 'nta', 'Nitab4.5_0000705g0170' => 'nta', 'Nitab4.5_0001326g0060' => 'nta', 'Nitab4.5_0001628g0030' => 'nta', 'Nitab4.5_0002103g0110' => 'nta', 'Nitab4.5_0002946g0030' => 'nta', 'Nitab4.5_0004639g0030' => 'nta', 'Nn2g11149' => 'nnu', 'Nn2g13389' => 'nnu', 'Nn4g25326' => 'nnu', 'Nn4g26290' => 'nnu', 'Nn5g29865' => 'nnu', 'Oeu004163.1' => 'oeu', 'Oeu006901.1' => 'oeu', 'Oeu010096.1' => 'oeu', 'Oeu024340.1' => 'oeu', 'Oeu048369.1' => 'oeu', 'Os01g0973000' => 'osa', 'Os03g0273800' => 'osa', 'Os03g0701200' => 'osa', 'Os03g0834050' => 'osa', 'Os07g0634400' => 'osa', 'Peaxi162Scf00092g01414' => 'pax', 'Peaxi162Scf00165g00818' => 'pax', 'Peaxi162Scf00309g00516' => 'pax', 'Peaxi162Scf00774g00218' => 'pax', 'PGR004G1824' => 'pgr', 'PGR004G2606' => 'pgr', 'PGR031G2716' => 'pgr', 'PGR102G2460' => 'pgr', 'PGR142G2599' => 'pgr', 'PGSC0003DMG400000843' => 'stu', 'PGSC0003DMG400008829' => 'stu', 'PGSC0003DMG400030418' => 'stu', 'PGSC0003DMG400031834' => 'stu', 'PGSC0003DMG401028300' => 'stu', 'PGSC0003DMG402028300' => 'stu', 'Phvul.001G219300' => 'pvu', 'Phvul.007G056000' => 'pvu', 'Phvul.007G208000' => 'pvu', 'Phvul.008G119500' => 'pvu', 'Phvul.010G011200' => 'pvu', 'Phvul.010G014800' => 'pvu', 'Phvul.011G062900' => 'pvu', 'Phvul.L007043' => 'pvu', 'Potri.001G242300' => 'ptr', 'Potri.002G185300' => 'ptr', 'Potri.006G086900' => 'ptr', 'Potri.008G151700' => 'ptr', 'Potri.009G033500' => 'ptr', 'Potri.010G089300' => 'ptr', 'Potri.014G110800' => 'ptr', 'Pp3c27_8130' => 'ppa', 'Pp3c6_27410' => 'ppa', 'PRCOL_00001659' => 'pco', 'PRCOL_00001927' => 'pco', 'PRCOL_00003649' => 'pco', 'Prupe.1G011600' => 'ppe', 'Prupe.3G000800' => 'ppe', 'Prupe.3G001100' => 'ppe', 'Prupe.6G072700' => 'ppe', 'Prupe.6G072800' => 'ppe', 'Prupe.6G257300' => 'ppe', 'Prupe.8G033000' => 'ppe', 'Psat0s2633g0080' => 'psa', 'Psat0s3396g0080' => 'psa', 'Psat0s3396g0200' => 'psa', 'Psat3g139080' => 'psa', 'Psat5g285080' => 'psa', 'Psat6g157760' => 'psa', 'Psat6g208440' => 'psa', 'Psat7g215320' => 'psa', 'Psat7g215400' => 'psa', 'Psat7g235600' => 'psa', 'Psat7g235760' => 'psa', 'PSO063G4603' => 'pso', 'PSO210G0182' => 'pso', 'PSO210G0196' => 'pso', 'PSO339G0394' => 'pso', 'PSO339G4127' => 'pso', 'PSO513G0064' => 'pso', 'PSO761G0079' => 'pso', 'QL01p031003' => 'qlo', 'QL01p031078' => 'qlo', 'QL06p003004' => 'qlo', 'QL07p048731' => 'qlo', 'QL09p037427' => 'qlo', 'RcHm_v2.0_Chr3g0466361' => 'rch', 'RcHm_v2.0_Chr3g0485571' => 'rch', 'RcHm_v2.0_Chr4g0416551' => 'rch', 'RcHm_v2.0_Chr5g0065831' => 'rch', 'Rhsim01G0230500' => 'rsi', 'Rhsim05G0194000' => 'rsi', 'Rhsim08G0250400' => 'rsi', 'Sabra02G0131000' => 'sbr', 'Sabra06G0066300' => 'sbr', 'Sabra08G0115500' => 'sbr', 'Sabra09G0023900' => 'sbr', 'Sabra10G0054000' => 'sbr', 'Sabra14G0081500' => 'sbr', 'Sabra16G0147100' => 'sbr', 'SalBow2G2957' => 'sbo', 'SalBow4G3320' => 'sbo', 'SalBow8G1894' => 'sbo', 'Sc07g0007950' => 'sci', 'Sc12g0001360' => 'sci', 'Sc13g0004330' => 'sci', 'Sc20g0005010' => 'sci', 'Sed0000361' => 'sed', 'Sed0001706' => 'sed', 'Sed0002422' => 'sed', 'Sed0004029' => 'sed', 'Sed0004602' => 'sed', 'Sed0004943' => 'sed', 'Sed0008646' => 'sed', 'Sed0023313' => 'sed', 'Sed0024843' => 'sed', 'SEGI_00081' => 'sgi', 'SEGI_00947' => 'sgi', 'SEGI_04046' => 'sgi', 'SEGI_06880' => 'sgi', 'SEGI_09736' => 'sgi', 'SEGI_12741' => 'sgi', 'SEGI_14530' => 'sgi', 'SEGI_20705' => 'sgi', 'SEGI_26088' => 'sgi', 'SEGI_28323' => 'sgi', 'SEGI_33343' => 'sgi', 'SGA_v2.0_scaffold126G33775' => 'sas', 'SGA_v2.0_scaffold2G01337' => 'sas', 'SGA_v2.0_scaffold38G15006' => 'sas', 'SGA_v2.0_scaffold39G15264' => 'sas', 'SGA_v2.0_scaffold453G51880' => 'sas', 'SHI12696' => 'shi', 'SMO367G1096' => 'smo', 'Solyc01g068630.3' => 'sly', 'Solyc05g011880.3' => 'sly', 'Solyc06g076300.3' => 'sly', 'Solyc09g010940.4' => 'sly', 'Solyc09g075890.3' => 'sly', 'Sopen01g030560' => 'spe', 'Sopen05g006630' => 'spe', 'Sopen06g032720' => 'spe', 'Sopen09g005660' => 'spe', 'Sopen09g030690' => 'spe', 'Sp4g14540' => 'spa', 'Sp4g20030' => 'spa', 'Sp5g01320' => 'spa', 'Sp6g21170' => 'spa', 'Sp6g21180' => 'spa', 'Sp6g21190' => 'spa', 'Sp6g40220' => 'spa', 'TAR362G0122' => 'tar', 'TAR362G1338' => 'tar', 'TAR369G0590' => 'tar', 'TAR371G0824' => 'tar', 'TAR622G1429' => 'tar', 'TAR623G0734' => 'tar', 'TAR625G0441' => 'tar', 'TAR629G0976' => 'tar', 'TAR633G1195' => 'tar', 'TAR636G2660' => 'tar', 'THA.LOC104799440' => 'tha', 'THA.LOC104800966' => 'tha', 'THA.LOC104806559' => 'tha', 'THA.LOC104810765' => 'tha', 'THA.LOC104816266' => 'tha', 'THA.LOC104817419' => 'tha', 'THA.LOC104827021' => 'tha', 'Thecc.01G327400' => 'tca', 'Thecc.04G229200' => 'tca', 'Thecc.05G037400' => 'tca', 'Thecc.09G318600' => 'tca', 'Thecc.09G318700' => 'tca', 'Thhalv10006238m.g' => 'esa', 'Thhalv10014321m.g' => 'esa', 'Thhalv10014335m.g' => 'esa', 'Thhalv10015826m.g' => 'esa', 'Thhalv10017107m.g' => 'esa', 'Thhalv10017180m.g' => 'esa', 'Thhalv10029339m.g' => 'esa', 'TPR.G1699' => 'tpr', 'TPR.G23609' => 'tpr', 'TPR.G3081' => 'tpr', 'TPR.G40397' => 'tpr', 'TPR.G5522' => 'tpr', 'TPR.G5618' => 'tpr', 'TPR.G5626' => 'tpr', 'TWI09G1632' => 'twi', 'TWI23G1230' => 'twi', 'TWI53G1064' => 'twi', 'TWI59G0751' => 'twi', 'TWI74G0947' => 'twi', 'TWI77G0337' => 'twi', 'TWI79G1254' => 'twi', 'unitig_0.g2341' => 'ugi', 'unitig_26.g10006' => 'ugi', 'unitig_26.g10008' => 'ugi', 'unitig_26.g9192' => 'ugi', 'vmacro14547' => 'vma', 'vmacro15333' => 'vma', 'vmacro18743' => 'vma', 'vmacro20166' => 'vma', 'VMungo0331G0523' => 'vmu', 'VMungo0331G1202' => 'vmu', 'VMungo0720G1228' => 'vmu', 'VMungo0720G1514' => 'vmu', 'VMungo1080G0169' => 'vmu', 'VMungo1127G1475' => 'vmu', 'VMungo1383G1208' => 'vmu', 'VMungo1383G1698' => 'vmu', 'Zm00001eb012270' => 'zma', 'Zm00001eb054100' => 'zma', 'Zm00001eb063350' => 'zma', 'Zm00001eb328560' => 'zma', 'Zm00001eb342820' => 'zma', 'Zm00001eb362210' => 'zma', 'Zm00001eb397730' => 'zma', 'Zm00001eb399750' => 'zma' ), 'gf_id' => 'HOM05D000959', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000959' ), 'data_identifier' => 'HOM05D000959', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000959', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '622', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p07100' => 'bna', 'A03p11720' => 'bna', 'A05p08300' => 'bna', 'A05p13380' => 'bna', 'A09p54130' => 'bna', 'A10p16690' => 'bna', 'A10p16700' => 'bna', 'A10p33390' => 'bna', 'Aa31LG10G16020' => 'aar', 'Aa31LG1G11810' => 'aar', 'Aa31LG1G11830' => 'aar', 'Aa31LG1G22510' => 'aar', 'Aa31LG5G4890' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5793' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2310' => 'aag', 'Actinidia08499' => 'ach', 'Actinidia11262' => 'ach', 'Actinidia23926' => 'ach', 'Actinidia34420' => 'ach', 'Actinidia36970' => 'ach', 'Ah.02g111220' => 'amhyb', 'Ah.15g097750' => 'amhyb', 'AL4G27500' => 'aly', 'AL6G11470' => 'aly', 'AL8G35950' => 'aly', 'AL8G35960' => 'aly', 'AL8G35970' => 'aly', 'Aqoxy1G00912' => 'aox', 'Aqoxy2G02253' => 'aox', 'Aqoxy2G02411' => 'aox', 'Aqoxy5G00485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BZ66YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K8ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM4FUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6BF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HFV7XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25JBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0YNNV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MAKK6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P70IT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP2Z6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V61LZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YWP64R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3S9AI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7PGHH' => 'arhy', 'AT2G32150' => 'ath', 'AT3G62040' => 'ath', 'AT5G02230' => 'ath', 'AT5G59480' => 'ath', 'AT5G59490' => 'ath', 'ATR0332G060' => 'atr', 'ATR0559G190' => 'atr', 'ATR0693G294' => 'atr', 'Atru.chr3.3975' => 'acertr', 'Atru.chr3.3976' => 'acertr', 'Atru.chr3.3977' => 'acertr', 'Atru.chr4.2498' => 'acertr', 'Atru.chr5.838' => 'acertr', 'Atru.chr8.1990' => 'acertr', 'Atru.chr8.1991' => 'acertr', 'Atru.chr8.1992' => 'acertr', 'AUR62001759' => 'cqu', 'AUR62009545' => 'cqu', 'AUR62010474' => 'cqu', 'AUR62025820' => 'cqu', 'AUR62030422' => 'cqu', 'AUR62033605' => 'cqu', 'AUR62038615' => 'cqu', 'AUR62041347' => 'cqu', 'BcaB01g04574' => 'bca', 'BcaB02g09263' => 'bca', 'BcaB02g10453' => 'bca', 'BcaB05g22513' => 'bca', 'BcaB08g36253' => 'bca', 'BcaB08g36254' => 'bca', 'BcaC01g06519' => 'bca', 'BcaC02g11889' => 'bca', 'BcaC03g14010' => 'bca', 'BcaC03g18439' => 'bca', 'BcaC04g19765' => 'bca', 'BcaC09g48432' => 'bca', 'BcaNung07302' => 'bca', 'BolC2t06040H' => 'bol', 'BolC2t07346H' => 'bol', 'BolC3t13817H' => 'bol', 'BolC4t22625H' => 'bol', 'BolC4t23297H' => 'bol', 'BolC8t51278H' => 'bol', 'BolC9t58050H' => 'bol', 'BolC9t58051H' => 'bol', 'BolC9t60163H' => 'bol', 'BraA02t04712Z' => 'bra', 'BraA02t05791Z' => 'bra', 'BraA03t10483Z' => 'bra', 'BraA05t19795Z' => 'bra', 'BraA05t20276Z' => 'bra', 'BraA09t40827Z' => 'bra', 'BraA10t43750Z' => 'bra', 'BraA10t43751Z' => 'bra', 'BraA10t45370Z' => 'bra', 'C02p00400' => 'bna', 'C02p12460' => 'bna', 'C03p13680' => 'bna', 'C04p10270' => 'bna', 'C04p17500' => 'bna', 'C08p37010' => 'bna', 'C09p51880' => 'bna', 'C09p51890' => 'bna', 'C09p74300' => 'bna', 'CAN.G179.26' => 'can', 'CAN.G3384.1' => 'can', 'CAN.G394.68' => 'can', 'CAN.G907.13' => 'can', 'CANSAT11G0012' => 'cansat', 'CANSAT25G1586' => 'cansat', 'CANSAT35G0735' => 'cansat', 'CANSAT54G0556' => 'cansat', 'CANSAT64G0356' => 'cansat', 'CANSAT78G2042' => 'cansat', 'CARHR125920' => 'chi', 'CARHR131910' => 'chi', 'CARHR172390' => 'chi', 'CARHR211140' => 'chi', 'CARHR285850' => 'chi', 'CARHR285860' => 'chi', 'Carub.0004s1347' => 'cru', 'Carub.0004s1960' => 'cru', 'Carub.0005s2880' => 'cru', 'Carub.0006s0107' => 'cru', 'Carub.0008s2015' => 'cru', 'Carub.0008s2016' => 'cru', 'Carub.0008s2017' => 'cru', 'Ca_01315_v3' => 'car', 'Ca_05063_v3' => 'car', 'Ca_10231_v3' => 'car', 'Ca_10913_v3' => 'car', 'Ca_19156_v3' => 'car', 'Ca_23644_v3' => 'car', 'Ca_26735_v3' => 'car', 'Cc01_g13130' => 'ccan', 'Cc02_g21690' => 'ccan', 'Cc03_g03600' => 'ccan', 'Cc06_g02510' => 'ccan', 'CDE02G1265' => 'cde', 'CDE05G0415' => 'cde', 'CDE08G1082' => 'cde', 'Cfa005780' => 'cfa', 'Cfa011522' => 'cfa', 'Cfa011523' => 'cfa', 'Cfa015627' => 'cfa', 'Cfa017359' => 'cfa', 'Ciclev10005687m.g' => 'ccl', 'Ciclev10012173m.g' => 'ccl', 'Ciclev10021621m.g' => 'ccl', 'Ciclev10028968m.g' => 'ccl', 'Ciclev10029907m.g' => 'ccl', 'CiPaw.01G164800' => 'cil', 'CiPaw.07G083700' => 'cil', 'CiPaw.07G127000' => 'cil', 'CiPaw.07G136900' => 'cil', 'CiPaw.08G081700' => 'cil', 'CiPaw.09G194600' => 'cil', 'CiPaw.10G146500' => 'cil', 'CiPaw.13G091500' => 'cil', 'CiPaw.13G091600' => 'cil', 'ClCG00G003390' => 'cla', 'ClCG01G007220' => 'cla', 'ClCG03G001370' => 'cla', 'ClCG04G008100' => 'cla', 'ClCG06G006110' => 'cla', 'ClCG06G006130' => 'cla', 'ClCG10G021210' => 'cla', 'COL.COLO4_07648' => 'col', 'COL.COLO4_07650' => 'col', 'COL.COLO4_07651' => 'col', 'COL.COLO4_14780' => 'col', 'COL.COLO4_18546' => 'col', 'COL.COLO4_18547' => 'col', 'COL.COLO4_23103' => 'col', 'COL.COLO4_30419' => 'col', 'COL.COLO4_34232' => 'col', 'Cpa.g.sc169.20' => 'cpa', 'Cpa.g.sc57.45' => 'cpa', 'Cpa.g.sc58.124' => 'cpa', 'Cpa.g.sc58.125' => 'cpa', 'Cpa.g.sc81.118' => 'cpa', 'Cpa.g.sc81.119' => 'cpa', 'Cre12.g524700' => 'cre', 'CsaV3_1G034430' => 'csa', 'CsaV3_1G034440' => 'csa', 'CsaV3_1G034450' => 'csa', 'CsaV3_3G034830' => 'csa', 'CsaV3_4G025090' => 'csa', 'CsaV3_5G018660' => 'csa', 'CsaV3_6G038160' => 'csa', 'CSS0003447' => 'camsi', 'CSS0017840' => 'camsi', 'CSS0019260' => 'camsi', 'CSS0040375' => 'camsi', 'CSS0042533' => 'camsi', 'DCAR_005960' => 'dca', 'DCAR_012104' => 'dca', 'DCAR_012105' => 'dca', 'DCAR_012293' => 'dca', 'DCAR_015632' => 'dca', 'DCAR_024602' => 'dca', 'DCAR_028752' => 'dca', 'Dinv06261' => 'din', 'Dinv13982' => 'din', 'Dinv17029' => 'din', 'Dinv18463' => 'din', 'Dinv33181' => 'din', 'Dinv35585' => 'din', 'Dinv37161' => 'din', 'Dinv42977' => 'din', 'Dinv43122' => 'din', 'Dinv44517' => 'din', 'Duzib093G0256' => 'dzi', 'Duzib106G1254' => 'dzi', 'Duzib128G1789' => 'dzi', 'Duzib133G0633' => 'dzi', 'Duzib138G0510' => 'dzi', 'Duzib150G1084' => 'dzi', 'Duzib168G0488' => 'dzi', 'Duzib168G1523' => 'dzi', 'Duzib170G0133' => 'dzi', 'ECA234G1433' => 'eca', 'ECA236G1432' => 'eca', 'ECA236G2256' => 'eca', 'ECA236G2365' => 'eca', 'ECA236G4830' => 'eca', 'ECA248G1505' => 'eca', 'EL10Ac3g06431' => 'bvu', 'EL10Ac5g12577' => 'bvu', 'EL10Ac6g13533' => 'bvu', 'EL10Ac7g16045' => 'bvu', 'Eucgr.A01281' => 'egr', 'Eucgr.B02326' => 'egr', 'Eucgr.H03532' => 'egr', 'Eucgr.K00553' => 'egr', 'Eucgr.K03116' => 'egr', 'FAN02G3963' => 'fan', 'FAN05G0438' => 'fan', 'FAN09G2434' => 'fan', 'FAN12G3984' => 'fan', 'FAN14G0798' => 'fan', 'FAN17G0652' => 'fan', 'FAN19G1988' => 'fan', 'FAN22G0632' => 'fan', 'FAN23G0387' => 'fan', 'FAN26G1323' => 'fan', 'FAN28G0666' => 'fan', 'FvH4_1g26080' => 'fve', 'FvH4_3g36780' => 'fve', 'FvH4_4g15270' => 'fve', 'FvH4_6g13490' => 'fve', 'Glyma.01G098700' => 'gma', 'Glyma.03G065900' => 'gma', 'Glyma.03G073754' => 'gma', 'Glyma.03G073758' => 'gma', 'Glyma.03G083200' => 'gma', 'Glyma.03G225500' => 'gma', 'Glyma.05G037766' => 'gma', 'Glyma.07G133500' => 'gma', 'Glyma.10G139400' => 'gma', 'Glyma.10G248900' => 'gma', 'Glyma.11G137800' => 'gma', 'Glyma.12G061300' => 'gma', 'Glyma.13G337900' => 'gma', 'Glyma.15G036600' => 'gma', 'Glyma.18G182800' => 'gma', 'Glyma.19G222500' => 'gma', 'Glyma.20G144800' => 'gma', 'Gohir.A01G222000' => 'ghi', 'Gohir.A03G044000' => 'ghi', 'Gohir.A03G044100' => 'ghi', 'Gohir.A04G083100' => 'ghi', 'Gohir.A07G127200' => 'ghi', 'Gohir.A07G132400' => 'ghi', 'Gohir.A08G000700' => 'ghi', 'Gohir.A11G327300' => 'ghi', 'Gohir.D01G211500' => 'ghi', 'Gohir.D03G123400' => 'ghi', 'Gohir.D03G123500' => 'ghi', 'Gohir.D04G121800' => 'ghi', 'Gohir.D07G131500' => 'ghi', 'Gohir.D07G136600' => 'ghi', 'Gohir.D08G011600' => 'ghi', 'Gohir.D11G346200' => 'ghi', 'Gorai.001G142800' => 'gra', 'Gorai.001G148700' => 'gra', 'Gorai.002G257300' => 'gra', 'Gorai.003G130000' => 'gra', 'Gorai.003G130100' => 'gra', 'Gorai.004G005300' => 'gra', 'Gorai.007G376500' => 'gra', 'Gorai.012G104700' => 'gra', 'GSVIVG01017946001' => 'vvi', 'GSVIVG01024928001' => 'vvi', 'GSVIVG01028227001' => 'vvi', 'GSVIVG01034151001' => 'vvi', 'HanXRQChr05g0135031' => 'han', 'HanXRQChr05g0135041' => 'han', 'HanXRQChr05g0140021' => 'han', 'HanXRQChr06g0178981' => 'han', 'HanXRQChr07g0188251' => 'han', 'HanXRQChr08g0235311' => 'han', 'HanXRQChr09g0271011' => 'han', 'HanXRQChr10g0293321' => 'han', 'HanXRQChr13g0388171' => 'han', 'Haze_00916' => 'cav', 'Haze_05063' => 'cav', 'Haze_20814' => 'cav', 'Haze_24128' => 'cav', 'Hma1.2p1_0745F.1_g212010' => 'hma', 'Hma1.2p1_0757F.1_g213260' => 'hma', 'Hma1.2p1_0936F.1_g238840' => 'hma', 'Hma1.2p1_1735F.1_g299890' => 'hma', 'Hma1.2p1_1861F.1_g305685' => 'hma', 'HPP92_003397' => 'vpl', 'HPP92_012597' => 'vpl', 'HPP92_015520' => 'vpl', 'HPP92_015539' => 'vpl', 'HPP92_020373' => 'vpl', 'Hund04938' => 'sun', 'Hund10677' => 'sun', 'Hund11033' => 'sun', 'Hund12155' => 'sun', 'Lalb_Chr01g0022551' => 'lal', 'Lalb_Chr03g0042341' => 'lal', 'Lalb_Chr07g0192931' => 'lal', 'Lalb_Chr12g0209551' => 'lal', 'Lalb_Chr19g0125251' => 'lal', 'Lalb_Chr19g0137891' => 'lal', 'Lalb_Chr21g0304641' => 'lal', 'Lalb_Chr21g0309881' => 'lal', 'Lj1A5T12' => 'lonja', 'Lj1C148G10' => 'lonja', 'Lj2A93T83' => 'lonja', 'Lj3A738G68' => 'lonja', 'Lj3C966T1' => 'lonja', 'Lj3g0018958' => 'lja', 'Lj3g0021831' => 'lja', 'Lj3g0025443' => 'lja', 'Lj4g0026809' => 'lja', 'Lj5g0012558' => 'lja', 'Lj5g0021586' => 'lja', 'Lsat_1_v5_gn_5_156840' => 'lsa', 'Lsat_1_v5_gn_8_73460' => 'lsa', 'Lsat_1_v5_gn_8_73481' => 'lsa', 'Lsat_1_v5_gn_9_31601' => 'lsa', 'Lsat_1_v5_gn_9_77320' => 'lsa', 'Manes.01G171300' => 'mes', 'Manes.01G171400' => 'mes', 'Manes.01G236100' => 'mes', 'Manes.02G130500' => 'mes', 'Manes.02G130600' => 'mes', 'Manes.03G180200' => 'mes', 'Manes.05G007000' => 'mes', 'Manes.08G084400' => 'mes', 'Manes.09G092600' => 'mes', 'Manes.15G027900' => 'mes', 'MBI04_g40948_MAGBIO' => 'mbi', 'MBI14_g12123_MAGBIO' => 'mbi', 'MBI18_g28915_MAGBIO' => 'mbi', 'MCO09G053' => 'mco', 'MCO11G782' => 'mco', 'MCO15G215' => 'mco', 'MD03G1088500' => 'mdo', 'MD03G1088600' => 'mdo', 'MD04G1130800' => 'mdo', 'MD09G1291700' => 'mdo', 'MD11G1097500' => 'mdo', 'MD11G1097600' => 'mdo', 'MD12G1143900' => 'mdo', 'MD13G1191400' => 'mdo', 'MD16G1191500' => 'mdo', 'Medtr1g085570' => 'mtr', 'Medtr1g104610' => 'mtr', 'Medtr2g097520' => 'mtr', 'Medtr4g021800' => 'mtr', 'Medtr4g021825' => 'mtr', 'Medtr4g064270' => 'mtr', 'Medtr4g064380' => 'mtr', 'Medtr7g062150' => 'mtr', 'MELO3C003138.2' => 'cme', 'MELO3C005187.2' => 'cme', 'MELO3C009252.2' => 'cme', 'MELO3C014481.2' => 'cme', 'MELO3C020616.2' => 'cme', 'MELO3C020617.2' => 'cme', 'MELO3C020618.2' => 'cme', 'Migut.G00328' => 'egut', 'Migut.J00320' => 'egut', 'Migut.L01000' => 'egut', 'Migut.L01953' => 'egut', 'MSTRG.10253' => 'ama', 'MSTRG.19077' => 'ama', 'MSTRG.26780' => 'ama', 'MSTRG.4023' => 'ama', 'MSTRG.5655' => 'ama', 'MSTRG.9992' => 'ama', 'Nitab4.5_0000043g0310' => 'nta', 'Nitab4.5_0000463g0080' => 'nta', 'Nitab4.5_0000705g0170' => 'nta', 'Nitab4.5_0001326g0060' => 'nta', 'Nitab4.5_0001628g0030' => 'nta', 'Nitab4.5_0002103g0110' => 'nta', 'Nitab4.5_0002946g0030' => 'nta', 'Nitab4.5_0004639g0030' => 'nta', 'Nn2g11149' => 'nnu', 'Nn2g13389' => 'nnu', 'Nn4g25326' => 'nnu', 'Nn4g26290' => 'nnu', 'Nn5g29865' => 'nnu', 'Oeu004163.1' => 'oeu', 'Oeu006901.1' => 'oeu', 'Oeu010096.1' => 'oeu', 'Oeu024340.1' => 'oeu', 'Oeu048369.1' => 'oeu', 'Os01g0973000' => 'osa', 'Os03g0273800' => 'osa', 'Os03g0701200' => 'osa', 'Os03g0834050' => 'osa', 'Os07g0634400' => 'osa', 'Peaxi162Scf00092g01414' => 'pax', 'Peaxi162Scf00165g00818' => 'pax', 'Peaxi162Scf00309g00516' => 'pax', 'Peaxi162Scf00774g00218' => 'pax', 'PGR004G1824' => 'pgr', 'PGR004G2606' => 'pgr', 'PGR031G2716' => 'pgr', 'PGR102G2460' => 'pgr', 'PGR142G2599' => 'pgr', 'PGSC0003DMG400000843' => 'stu', 'PGSC0003DMG400008829' => 'stu', 'PGSC0003DMG400030418' => 'stu', 'PGSC0003DMG400031834' => 'stu', 'PGSC0003DMG401028300' => 'stu', 'PGSC0003DMG402028300' => 'stu', 'Phvul.001G219300' => 'pvu', 'Phvul.007G056000' => 'pvu', 'Phvul.007G208000' => 'pvu', 'Phvul.008G119500' => 'pvu', 'Phvul.010G011200' => 'pvu', 'Phvul.010G014800' => 'pvu', 'Phvul.011G062900' => 'pvu', 'Phvul.L007043' => 'pvu', 'Potri.001G242300' => 'ptr', 'Potri.002G185300' => 'ptr', 'Potri.006G086900' => 'ptr', 'Potri.008G151700' => 'ptr', 'Potri.009G033500' => 'ptr', 'Potri.010G089300' => 'ptr', 'Potri.014G110800' => 'ptr', 'Pp3c27_8130' => 'ppa', 'Pp3c6_27410' => 'ppa', 'PRCOL_00001659' => 'pco', 'PRCOL_00001927' => 'pco', 'PRCOL_00003649' => 'pco', 'Prupe.1G011600' => 'ppe', 'Prupe.3G000800' => 'ppe', 'Prupe.3G001100' => 'ppe', 'Prupe.6G072700' => 'ppe', 'Prupe.6G072800' => 'ppe', 'Prupe.6G257300' => 'ppe', 'Prupe.8G033000' => 'ppe', 'Psat0s2633g0080' => 'psa', 'Psat0s3396g0080' => 'psa', 'Psat0s3396g0200' => 'psa', 'Psat3g139080' => 'psa', 'Psat5g285080' => 'psa', 'Psat6g157760' => 'psa', 'Psat6g208440' => 'psa', 'Psat7g215320' => 'psa', 'Psat7g215400' => 'psa', 'Psat7g235600' => 'psa', 'Psat7g235760' => 'psa', 'PSO063G4603' => 'pso', 'PSO210G0182' => 'pso', 'PSO210G0196' => 'pso', 'PSO339G0394' => 'pso', 'PSO339G4127' => 'pso', 'PSO513G0064' => 'pso', 'PSO761G0079' => 'pso', 'QL01p031003' => 'qlo', 'QL01p031078' => 'qlo', 'QL06p003004' => 'qlo', 'QL07p048731' => 'qlo', 'QL09p037427' => 'qlo', 'RcHm_v2.0_Chr3g0466361' => 'rch', 'RcHm_v2.0_Chr3g0485571' => 'rch', 'RcHm_v2.0_Chr4g0416551' => 'rch', 'RcHm_v2.0_Chr5g0065831' => 'rch', 'Rhsim01G0230500' => 'rsi', 'Rhsim05G0194000' => 'rsi', 'Rhsim08G0250400' => 'rsi', 'Sabra02G0131000' => 'sbr', 'Sabra06G0066300' => 'sbr', 'Sabra08G0115500' => 'sbr', 'Sabra09G0023900' => 'sbr', 'Sabra10G0054000' => 'sbr', 'Sabra14G0081500' => 'sbr', 'Sabra16G0147100' => 'sbr', 'SalBow2G2957' => 'sbo', 'SalBow4G3320' => 'sbo', 'SalBow8G1894' => 'sbo', 'Sc07g0007950' => 'sci', 'Sc12g0001360' => 'sci', 'Sc13g0004330' => 'sci', 'Sc20g0005010' => 'sci', 'Sed0000361' => 'sed', 'Sed0001706' => 'sed', 'Sed0002422' => 'sed', 'Sed0004029' => 'sed', 'Sed0004602' => 'sed', 'Sed0004943' => 'sed', 'Sed0008646' => 'sed', 'Sed0023313' => 'sed', 'Sed0024843' => 'sed', 'SEGI_00081' => 'sgi', 'SEGI_00947' => 'sgi', 'SEGI_04046' => 'sgi', 'SEGI_06880' => 'sgi', 'SEGI_09736' => 'sgi', 'SEGI_12741' => 'sgi', 'SEGI_14530' => 'sgi', 'SEGI_20705' => 'sgi', 'SEGI_26088' => 'sgi', 'SEGI_28323' => 'sgi', 'SEGI_33343' => 'sgi', 'SGA_v2.0_scaffold126G33775' => 'sas', 'SGA_v2.0_scaffold2G01337' => 'sas', 'SGA_v2.0_scaffold38G15006' => 'sas', 'SGA_v2.0_scaffold39G15264' => 'sas', 'SGA_v2.0_scaffold453G51880' => 'sas', 'SHI12696' => 'shi', 'SMO367G1096' => 'smo', 'Solyc01g068630.3' => 'sly', 'Solyc05g011880.3' => 'sly', 'Solyc06g076300.3' => 'sly', 'Solyc09g010940.4' => 'sly', 'Solyc09g075890.3' => 'sly', 'Sopen01g030560' => 'spe', 'Sopen05g006630' => 'spe', 'Sopen06g032720' => 'spe', 'Sopen09g005660' => 'spe', 'Sopen09g030690' => 'spe', 'Sp4g14540' => 'spa', 'Sp4g20030' => 'spa', 'Sp5g01320' => 'spa', 'Sp6g21170' => 'spa', 'Sp6g21180' => 'spa', 'Sp6g21190' => 'spa', 'Sp6g40220' => 'spa', 'TAR362G0122' => 'tar', 'TAR362G1338' => 'tar', 'TAR369G0590' => 'tar', 'TAR371G0824' => 'tar', 'TAR622G1429' => 'tar', 'TAR623G0734' => 'tar', 'TAR625G0441' => 'tar', 'TAR629G0976' => 'tar', 'TAR633G1195' => 'tar', 'TAR636G2660' => 'tar', 'THA.LOC104799440' => 'tha', 'THA.LOC104800966' => 'tha', 'THA.LOC104806559' => 'tha', 'THA.LOC104810765' => 'tha', 'THA.LOC104816266' => 'tha', 'THA.LOC104817419' => 'tha', 'THA.LOC104827021' => 'tha', 'Thecc.01G327400' => 'tca', 'Thecc.04G229200' => 'tca', 'Thecc.05G037400' => 'tca', 'Thecc.09G318600' => 'tca', 'Thecc.09G318700' => 'tca', 'Thhalv10006238m.g' => 'esa', 'Thhalv10014321m.g' => 'esa', 'Thhalv10014335m.g' => 'esa', 'Thhalv10015826m.g' => 'esa', 'Thhalv10017107m.g' => 'esa', 'Thhalv10017180m.g' => 'esa', 'Thhalv10029339m.g' => 'esa', 'TPR.G1699' => 'tpr', 'TPR.G23609' => 'tpr', 'TPR.G3081' => 'tpr', 'TPR.G40397' => 'tpr', 'TPR.G5522' => 'tpr', 'TPR.G5618' => 'tpr', 'TPR.G5626' => 'tpr', 'TWI09G1632' => 'twi', 'TWI23G1230' => 'twi', 'TWI53G1064' => 'twi', 'TWI59G0751' => 'twi', 'TWI74G0947' => 'twi', 'TWI77G0337' => 'twi', 'TWI79G1254' => 'twi', 'unitig_0.g2341' => 'ugi', 'unitig_26.g10006' => 'ugi', 'unitig_26.g10008' => 'ugi', 'unitig_26.g9192' => 'ugi', 'vmacro14547' => 'vma', 'vmacro15333' => 'vma', 'vmacro18743' => 'vma', 'vmacro20166' => 'vma', 'VMungo0331G0523' => 'vmu', 'VMungo0331G1202' => 'vmu', 'VMungo0720G1228' => 'vmu', 'VMungo0720G1514' => 'vmu', 'VMungo1080G0169' => 'vmu', 'VMungo1127G1475' => 'vmu', 'VMungo1383G1208' => 'vmu', 'VMungo1383G1698' => 'vmu', 'Zm00001eb012270' => 'zma', 'Zm00001eb054100' => 'zma', 'Zm00001eb063350' => 'zma', 'Zm00001eb328560' => 'zma', 'Zm00001eb342820' => 'zma', 'Zm00001eb362210' => 'zma', 'Zm00001eb397730' => 'zma', 'Zm00001eb399750' => 'zma' ) $gf_id = 'HOM05D000959' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000959' ) $data_identifier = 'HOM05D000959' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 5, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 5, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 10, 'mbi' => (int) 3, 'mco' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 2, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 3, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 11, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399750' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000959', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '622', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p07100' => 'bna', 'A03p11720' => 'bna', 'A05p08300' => 'bna', 'A05p13380' => 'bna', 'A09p54130' => 'bna', 'A10p16690' => 'bna', 'A10p16700' => 'bna', 'A10p33390' => 'bna', 'Aa31LG10G16020' => 'aar', 'Aa31LG1G11810' => 'aar', 'Aa31LG1G11830' => 'aar', 'Aa31LG1G22510' => 'aar', 'Aa31LG5G4890' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5793' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2310' => 'aag', 'Actinidia08499' => 'ach', 'Actinidia11262' => 'ach', 'Actinidia23926' => 'ach', 'Actinidia34420' => 'ach', 'Actinidia36970' => 'ach', 'Ah.02g111220' => 'amhyb', 'Ah.15g097750' => 'amhyb', 'AL4G27500' => 'aly', 'AL6G11470' => 'aly', 'AL8G35950' => 'aly', 'AL8G35960' => 'aly', 'AL8G35970' => 'aly', 'Aqoxy1G00912' => 'aox', 'Aqoxy2G02253' => 'aox', 'Aqoxy2G02411' => 'aox', 'Aqoxy5G00485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BZ66YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K8ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM4FUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6BF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HFV7XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25JBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0YNNV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MAKK6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P70IT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP2Z6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V61LZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YWP64R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3S9AI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7PGHH' => 'arhy', 'AT2G32150' => 'ath', 'AT3G62040' => 'ath', 'AT5G02230' => 'ath', 'AT5G59480' => 'ath', 'AT5G59490' => 'ath', 'ATR0332G060' => 'atr', 'ATR0559G190' => 'atr', 'ATR0693G294' => 'atr', 'Atru.chr3.3975' => 'acertr', 'Atru.chr3.3976' => 'acertr', 'Atru.chr3.3977' => 'acertr', 'Atru.chr4.2498' => 'acertr', 'Atru.chr5.838' => 'acertr', 'Atru.chr8.1990' => 'acertr', 'Atru.chr8.1991' => 'acertr', 'Atru.chr8.1992' => 'acertr', 'AUR62001759' => 'cqu', 'AUR62009545' => 'cqu', 'AUR62010474' => 'cqu', 'AUR62025820' => 'cqu', 'AUR62030422' => 'cqu', 'AUR62033605' => 'cqu', 'AUR62038615' => 'cqu', 'AUR62041347' => 'cqu', 'BcaB01g04574' => 'bca', 'BcaB02g09263' => 'bca', 'BcaB02g10453' => 'bca', 'BcaB05g22513' => 'bca', 'BcaB08g36253' => 'bca', 'BcaB08g36254' => 'bca', 'BcaC01g06519' => 'bca', 'BcaC02g11889' => 'bca', 'BcaC03g14010' => 'bca', 'BcaC03g18439' => 'bca', 'BcaC04g19765' => 'bca', 'BcaC09g48432' => 'bca', 'BcaNung07302' => 'bca', 'BolC2t06040H' => 'bol', 'BolC2t07346H' => 'bol', 'BolC3t13817H' => 'bol', 'BolC4t22625H' => 'bol', 'BolC4t23297H' => 'bol', 'BolC8t51278H' => 'bol', 'BolC9t58050H' => 'bol', 'BolC9t58051H' => 'bol', 'BolC9t60163H' => 'bol', 'BraA02t04712Z' => 'bra', 'BraA02t05791Z' => 'bra', 'BraA03t10483Z' => 'bra', 'BraA05t19795Z' => 'bra', 'BraA05t20276Z' => 'bra', 'BraA09t40827Z' => 'bra', 'BraA10t43750Z' => 'bra', 'BraA10t43751Z' => 'bra', 'BraA10t45370Z' => 'bra', 'C02p00400' => 'bna', 'C02p12460' => 'bna', 'C03p13680' => 'bna', 'C04p10270' => 'bna', 'C04p17500' => 'bna', 'C08p37010' => 'bna', 'C09p51880' => 'bna', 'C09p51890' => 'bna', 'C09p74300' => 'bna', 'CAN.G179.26' => 'can', 'CAN.G3384.1' => 'can', 'CAN.G394.68' => 'can', 'CAN.G907.13' => 'can', 'CANSAT11G0012' => 'cansat', 'CANSAT25G1586' => 'cansat', 'CANSAT35G0735' => 'cansat', 'CANSAT54G0556' => 'cansat', 'CANSAT64G0356' => 'cansat', 'CANSAT78G2042' => 'cansat', 'CARHR125920' => 'chi', 'CARHR131910' => 'chi', 'CARHR172390' => 'chi', 'CARHR211140' => 'chi', 'CARHR285850' => 'chi', 'CARHR285860' => 'chi', 'Carub.0004s1347' => 'cru', 'Carub.0004s1960' => 'cru', 'Carub.0005s2880' => 'cru', 'Carub.0006s0107' => 'cru', 'Carub.0008s2015' => 'cru', 'Carub.0008s2016' => 'cru', 'Carub.0008s2017' => 'cru', 'Ca_01315_v3' => 'car', 'Ca_05063_v3' => 'car', 'Ca_10231_v3' => 'car', 'Ca_10913_v3' => 'car', 'Ca_19156_v3' => 'car', 'Ca_23644_v3' => 'car', 'Ca_26735_v3' => 'car', 'Cc01_g13130' => 'ccan', 'Cc02_g21690' => 'ccan', 'Cc03_g03600' => 'ccan', 'Cc06_g02510' => 'ccan', 'CDE02G1265' => 'cde', 'CDE05G0415' => 'cde', 'CDE08G1082' => 'cde', 'Cfa005780' => 'cfa', 'Cfa011522' => 'cfa', 'Cfa011523' => 'cfa', 'Cfa015627' => 'cfa', 'Cfa017359' => 'cfa', 'Ciclev10005687m.g' => 'ccl', 'Ciclev10012173m.g' => 'ccl', 'Ciclev10021621m.g' => 'ccl', 'Ciclev10028968m.g' => 'ccl', 'Ciclev10029907m.g' => 'ccl', 'CiPaw.01G164800' => 'cil', 'CiPaw.07G083700' => 'cil', 'CiPaw.07G127000' => 'cil', 'CiPaw.07G136900' => 'cil', 'CiPaw.08G081700' => 'cil', 'CiPaw.09G194600' => 'cil', 'CiPaw.10G146500' => 'cil', 'CiPaw.13G091500' => 'cil', 'CiPaw.13G091600' => 'cil', 'ClCG00G003390' => 'cla', 'ClCG01G007220' => 'cla', 'ClCG03G001370' => 'cla', 'ClCG04G008100' => 'cla', 'ClCG06G006110' => 'cla', 'ClCG06G006130' => 'cla', 'ClCG10G021210' => 'cla', 'COL.COLO4_07648' => 'col', 'COL.COLO4_07650' => 'col', 'COL.COLO4_07651' => 'col', 'COL.COLO4_14780' => 'col', 'COL.COLO4_18546' => 'col', 'COL.COLO4_18547' => 'col', 'COL.COLO4_23103' => 'col', 'COL.COLO4_30419' => 'col', 'COL.COLO4_34232' => 'col', 'Cpa.g.sc169.20' => 'cpa', 'Cpa.g.sc57.45' => 'cpa', 'Cpa.g.sc58.124' => 'cpa', 'Cpa.g.sc58.125' => 'cpa', 'Cpa.g.sc81.118' => 'cpa', 'Cpa.g.sc81.119' => 'cpa', 'Cre12.g524700' => 'cre', 'CsaV3_1G034430' => 'csa', 'CsaV3_1G034440' => 'csa', 'CsaV3_1G034450' => 'csa', 'CsaV3_3G034830' => 'csa', 'CsaV3_4G025090' => 'csa', 'CsaV3_5G018660' => 'csa', 'CsaV3_6G038160' => 'csa', 'CSS0003447' => 'camsi', 'CSS0017840' => 'camsi', 'CSS0019260' => 'camsi', 'CSS0040375' => 'camsi', 'CSS0042533' => 'camsi', 'DCAR_005960' => 'dca', 'DCAR_012104' => 'dca', 'DCAR_012105' => 'dca', 'DCAR_012293' => 'dca', 'DCAR_015632' => 'dca', 'DCAR_024602' => 'dca', 'DCAR_028752' => 'dca', 'Dinv06261' => 'din', 'Dinv13982' => 'din', 'Dinv17029' => 'din', 'Dinv18463' => 'din', 'Dinv33181' => 'din', 'Dinv35585' => 'din', 'Dinv37161' => 'din', 'Dinv42977' => 'din', 'Dinv43122' => 'din', 'Dinv44517' => 'din', 'Duzib093G0256' => 'dzi', 'Duzib106G1254' => 'dzi', 'Duzib128G1789' => 'dzi', 'Duzib133G0633' => 'dzi', 'Duzib138G0510' => 'dzi', 'Duzib150G1084' => 'dzi', 'Duzib168G0488' => 'dzi', 'Duzib168G1523' => 'dzi', 'Duzib170G0133' => 'dzi', 'ECA234G1433' => 'eca', 'ECA236G1432' => 'eca', 'ECA236G2256' => 'eca', 'ECA236G2365' => 'eca', 'ECA236G4830' => 'eca', 'ECA248G1505' => 'eca', 'EL10Ac3g06431' => 'bvu', 'EL10Ac5g12577' => 'bvu', 'EL10Ac6g13533' => 'bvu', 'EL10Ac7g16045' => 'bvu', 'Eucgr.A01281' => 'egr', 'Eucgr.B02326' => 'egr', 'Eucgr.H03532' => 'egr', 'Eucgr.K00553' => 'egr', 'Eucgr.K03116' => 'egr', 'FAN02G3963' => 'fan', 'FAN05G0438' => 'fan', 'FAN09G2434' => 'fan', 'FAN12G3984' => 'fan', 'FAN14G0798' => 'fan', 'FAN17G0652' => 'fan', 'FAN19G1988' => 'fan', 'FAN22G0632' => 'fan', 'FAN23G0387' => 'fan', 'FAN26G1323' => 'fan', 'FAN28G0666' => 'fan', 'FvH4_1g26080' => 'fve', 'FvH4_3g36780' => 'fve', 'FvH4_4g15270' => 'fve', 'FvH4_6g13490' => 'fve', 'Glyma.01G098700' => 'gma', 'Glyma.03G065900' => 'gma', 'Glyma.03G073754' => 'gma', 'Glyma.03G073758' => 'gma', 'Glyma.03G083200' => 'gma', 'Glyma.03G225500' => 'gma', 'Glyma.05G037766' => 'gma', 'Glyma.07G133500' => 'gma', 'Glyma.10G139400' => 'gma', 'Glyma.10G248900' => 'gma', 'Glyma.11G137800' => 'gma', 'Glyma.12G061300' => 'gma', 'Glyma.13G337900' => 'gma', 'Glyma.15G036600' => 'gma', 'Glyma.18G182800' => 'gma', 'Glyma.19G222500' => 'gma', 'Glyma.20G144800' => 'gma', 'Gohir.A01G222000' => 'ghi', 'Gohir.A03G044000' => 'ghi', 'Gohir.A03G044100' => 'ghi', 'Gohir.A04G083100' => 'ghi', 'Gohir.A07G127200' => 'ghi', 'Gohir.A07G132400' => 'ghi', 'Gohir.A08G000700' => 'ghi', 'Gohir.A11G327300' => 'ghi', 'Gohir.D01G211500' => 'ghi', 'Gohir.D03G123400' => 'ghi', 'Gohir.D03G123500' => 'ghi', 'Gohir.D04G121800' => 'ghi', 'Gohir.D07G131500' => 'ghi', 'Gohir.D07G136600' => 'ghi', 'Gohir.D08G011600' => 'ghi', 'Gohir.D11G346200' => 'ghi', 'Gorai.001G142800' => 'gra', 'Gorai.001G148700' => 'gra', 'Gorai.002G257300' => 'gra', 'Gorai.003G130000' => 'gra', 'Gorai.003G130100' => 'gra', 'Gorai.004G005300' => 'gra', 'Gorai.007G376500' => 'gra', 'Gorai.012G104700' => 'gra', 'GSVIVG01017946001' => 'vvi', 'GSVIVG01024928001' => 'vvi', 'GSVIVG01028227001' => 'vvi', 'GSVIVG01034151001' => 'vvi', 'HanXRQChr05g0135031' => 'han', 'HanXRQChr05g0135041' => 'han', 'HanXRQChr05g0140021' => 'han', 'HanXRQChr06g0178981' => 'han', 'HanXRQChr07g0188251' => 'han', 'HanXRQChr08g0235311' => 'han', 'HanXRQChr09g0271011' => 'han', 'HanXRQChr10g0293321' => 'han', 'HanXRQChr13g0388171' => 'han', 'Haze_00916' => 'cav', 'Haze_05063' => 'cav', 'Haze_20814' => 'cav', 'Haze_24128' => 'cav', 'Hma1.2p1_0745F.1_g212010' => 'hma', 'Hma1.2p1_0757F.1_g213260' => 'hma', 'Hma1.2p1_0936F.1_g238840' => 'hma', 'Hma1.2p1_1735F.1_g299890' => 'hma', 'Hma1.2p1_1861F.1_g305685' => 'hma', 'HPP92_003397' => 'vpl', 'HPP92_012597' => 'vpl', 'HPP92_015520' => 'vpl', 'HPP92_015539' => 'vpl', 'HPP92_020373' => 'vpl', 'Hund04938' => 'sun', 'Hund10677' => 'sun', 'Hund11033' => 'sun', 'Hund12155' => 'sun', 'Lalb_Chr01g0022551' => 'lal', 'Lalb_Chr03g0042341' => 'lal', 'Lalb_Chr07g0192931' => 'lal', 'Lalb_Chr12g0209551' => 'lal', 'Lalb_Chr19g0125251' => 'lal', 'Lalb_Chr19g0137891' => 'lal', 'Lalb_Chr21g0304641' => 'lal', 'Lalb_Chr21g0309881' => 'lal', 'Lj1A5T12' => 'lonja', 'Lj1C148G10' => 'lonja', 'Lj2A93T83' => 'lonja', 'Lj3A738G68' => 'lonja', 'Lj3C966T1' => 'lonja', 'Lj3g0018958' => 'lja', 'Lj3g0021831' => 'lja', 'Lj3g0025443' => 'lja', 'Lj4g0026809' => 'lja', 'Lj5g0012558' => 'lja', 'Lj5g0021586' => 'lja', 'Lsat_1_v5_gn_5_156840' => 'lsa', 'Lsat_1_v5_gn_8_73460' => 'lsa', 'Lsat_1_v5_gn_8_73481' => 'lsa', 'Lsat_1_v5_gn_9_31601' => 'lsa', 'Lsat_1_v5_gn_9_77320' => 'lsa', 'Manes.01G171300' => 'mes', 'Manes.01G171400' => 'mes', 'Manes.01G236100' => 'mes', 'Manes.02G130500' => 'mes', 'Manes.02G130600' => 'mes', 'Manes.03G180200' => 'mes', 'Manes.05G007000' => 'mes', 'Manes.08G084400' => 'mes', 'Manes.09G092600' => 'mes', 'Manes.15G027900' => 'mes', 'MBI04_g40948_MAGBIO' => 'mbi', 'MBI14_g12123_MAGBIO' => 'mbi', 'MBI18_g28915_MAGBIO' => 'mbi', 'MCO09G053' => 'mco', 'MCO11G782' => 'mco', 'MCO15G215' => 'mco', 'MD03G1088500' => 'mdo', 'MD03G1088600' => 'mdo', 'MD04G1130800' => 'mdo', 'MD09G1291700' => 'mdo', 'MD11G1097500' => 'mdo', 'MD11G1097600' => 'mdo', 'MD12G1143900' => 'mdo', 'MD13G1191400' => 'mdo', 'MD16G1191500' => 'mdo', 'Medtr1g085570' => 'mtr', 'Medtr1g104610' => 'mtr', 'Medtr2g097520' => 'mtr', 'Medtr4g021800' => 'mtr', 'Medtr4g021825' => 'mtr', 'Medtr4g064270' => 'mtr', 'Medtr4g064380' => 'mtr', 'Medtr7g062150' => 'mtr', 'MELO3C003138.2' => 'cme', 'MELO3C005187.2' => 'cme', 'MELO3C009252.2' => 'cme', 'MELO3C014481.2' => 'cme', 'MELO3C020616.2' => 'cme', 'MELO3C020617.2' => 'cme', 'MELO3C020618.2' => 'cme', 'Migut.G00328' => 'egut', 'Migut.J00320' => 'egut', 'Migut.L01000' => 'egut', 'Migut.L01953' => 'egut', 'MSTRG.10253' => 'ama', 'MSTRG.19077' => 'ama', 'MSTRG.26780' => 'ama', 'MSTRG.4023' => 'ama', 'MSTRG.5655' => 'ama', 'MSTRG.9992' => 'ama', 'Nitab4.5_0000043g0310' => 'nta', 'Nitab4.5_0000463g0080' => 'nta', 'Nitab4.5_0000705g0170' => 'nta', 'Nitab4.5_0001326g0060' => 'nta', 'Nitab4.5_0001628g0030' => 'nta', 'Nitab4.5_0002103g0110' => 'nta', 'Nitab4.5_0002946g0030' => 'nta', 'Nitab4.5_0004639g0030' => 'nta', 'Nn2g11149' => 'nnu', 'Nn2g13389' => 'nnu', 'Nn4g25326' => 'nnu', 'Nn4g26290' => 'nnu', 'Nn5g29865' => 'nnu', 'Oeu004163.1' => 'oeu', 'Oeu006901.1' => 'oeu', 'Oeu010096.1' => 'oeu', 'Oeu024340.1' => 'oeu', 'Oeu048369.1' => 'oeu', 'Os01g0973000' => 'osa', 'Os03g0273800' => 'osa', 'Os03g0701200' => 'osa', 'Os03g0834050' => 'osa', 'Os07g0634400' => 'osa', 'Peaxi162Scf00092g01414' => 'pax', 'Peaxi162Scf00165g00818' => 'pax', 'Peaxi162Scf00309g00516' => 'pax', 'Peaxi162Scf00774g00218' => 'pax', 'PGR004G1824' => 'pgr', 'PGR004G2606' => 'pgr', 'PGR031G2716' => 'pgr', 'PGR102G2460' => 'pgr', 'PGR142G2599' => 'pgr', 'PGSC0003DMG400000843' => 'stu', 'PGSC0003DMG400008829' => 'stu', 'PGSC0003DMG400030418' => 'stu', 'PGSC0003DMG400031834' => 'stu', 'PGSC0003DMG401028300' => 'stu', 'PGSC0003DMG402028300' => 'stu', 'Phvul.001G219300' => 'pvu', 'Phvul.007G056000' => 'pvu', 'Phvul.007G208000' => 'pvu', 'Phvul.008G119500' => 'pvu', 'Phvul.010G011200' => 'pvu', 'Phvul.010G014800' => 'pvu', 'Phvul.011G062900' => 'pvu', 'Phvul.L007043' => 'pvu', 'Potri.001G242300' => 'ptr', 'Potri.002G185300' => 'ptr', 'Potri.006G086900' => 'ptr', 'Potri.008G151700' => 'ptr', 'Potri.009G033500' => 'ptr', 'Potri.010G089300' => 'ptr', 'Potri.014G110800' => 'ptr', 'Pp3c27_8130' => 'ppa', 'Pp3c6_27410' => 'ppa', 'PRCOL_00001659' => 'pco', 'PRCOL_00001927' => 'pco', 'PRCOL_00003649' => 'pco', 'Prupe.1G011600' => 'ppe', 'Prupe.3G000800' => 'ppe', 'Prupe.3G001100' => 'ppe', 'Prupe.6G072700' => 'ppe', 'Prupe.6G072800' => 'ppe', 'Prupe.6G257300' => 'ppe', 'Prupe.8G033000' => 'ppe', 'Psat0s2633g0080' => 'psa', 'Psat0s3396g0080' => 'psa', 'Psat0s3396g0200' => 'psa', 'Psat3g139080' => 'psa', 'Psat5g285080' => 'psa', 'Psat6g157760' => 'psa', 'Psat6g208440' => 'psa', 'Psat7g215320' => 'psa', 'Psat7g215400' => 'psa', 'Psat7g235600' => 'psa', 'Psat7g235760' => 'psa', 'PSO063G4603' => 'pso', 'PSO210G0182' => 'pso', 'PSO210G0196' => 'pso', 'PSO339G0394' => 'pso', 'PSO339G4127' => 'pso', 'PSO513G0064' => 'pso', 'PSO761G0079' => 'pso', 'QL01p031003' => 'qlo', 'QL01p031078' => 'qlo', 'QL06p003004' => 'qlo', 'QL07p048731' => 'qlo', 'QL09p037427' => 'qlo', 'RcHm_v2.0_Chr3g0466361' => 'rch', 'RcHm_v2.0_Chr3g0485571' => 'rch', 'RcHm_v2.0_Chr4g0416551' => 'rch', 'RcHm_v2.0_Chr5g0065831' => 'rch', 'Rhsim01G0230500' => 'rsi', 'Rhsim05G0194000' => 'rsi', 'Rhsim08G0250400' => 'rsi', 'Sabra02G0131000' => 'sbr', 'Sabra06G0066300' => 'sbr', 'Sabra08G0115500' => 'sbr', 'Sabra09G0023900' => 'sbr', 'Sabra10G0054000' => 'sbr', 'Sabra14G0081500' => 'sbr', 'Sabra16G0147100' => 'sbr', 'SalBow2G2957' => 'sbo', 'SalBow4G3320' => 'sbo', 'SalBow8G1894' => 'sbo', 'Sc07g0007950' => 'sci', 'Sc12g0001360' => 'sci', 'Sc13g0004330' => 'sci', 'Sc20g0005010' => 'sci', 'Sed0000361' => 'sed', 'Sed0001706' => 'sed', 'Sed0002422' => 'sed', 'Sed0004029' => 'sed', 'Sed0004602' => 'sed', 'Sed0004943' => 'sed', 'Sed0008646' => 'sed', 'Sed0023313' => 'sed', 'Sed0024843' => 'sed', 'SEGI_00081' => 'sgi', 'SEGI_00947' => 'sgi', 'SEGI_04046' => 'sgi', 'SEGI_06880' => 'sgi', 'SEGI_09736' => 'sgi', 'SEGI_12741' => 'sgi', 'SEGI_14530' => 'sgi', 'SEGI_20705' => 'sgi', 'SEGI_26088' => 'sgi', 'SEGI_28323' => 'sgi', 'SEGI_33343' => 'sgi', 'SGA_v2.0_scaffold126G33775' => 'sas', 'SGA_v2.0_scaffold2G01337' => 'sas', 'SGA_v2.0_scaffold38G15006' => 'sas', 'SGA_v2.0_scaffold39G15264' => 'sas', 'SGA_v2.0_scaffold453G51880' => 'sas', 'SHI12696' => 'shi', 'SMO367G1096' => 'smo', 'Solyc01g068630.3' => 'sly', 'Solyc05g011880.3' => 'sly', 'Solyc06g076300.3' => 'sly', 'Solyc09g010940.4' => 'sly', 'Solyc09g075890.3' => 'sly', 'Sopen01g030560' => 'spe', 'Sopen05g006630' => 'spe', 'Sopen06g032720' => 'spe', 'Sopen09g005660' => 'spe', 'Sopen09g030690' => 'spe', 'Sp4g14540' => 'spa', 'Sp4g20030' => 'spa', 'Sp5g01320' => 'spa', 'Sp6g21170' => 'spa', 'Sp6g21180' => 'spa', 'Sp6g21190' => 'spa', 'Sp6g40220' => 'spa', 'TAR362G0122' => 'tar', 'TAR362G1338' => 'tar', 'TAR369G0590' => 'tar', 'TAR371G0824' => 'tar', 'TAR622G1429' => 'tar', 'TAR623G0734' => 'tar', 'TAR625G0441' => 'tar', 'TAR629G0976' => 'tar', 'TAR633G1195' => 'tar', 'TAR636G2660' => 'tar', 'THA.LOC104799440' => 'tha', 'THA.LOC104800966' => 'tha', 'THA.LOC104806559' => 'tha', 'THA.LOC104810765' => 'tha', 'THA.LOC104816266' => 'tha', 'THA.LOC104817419' => 'tha', 'THA.LOC104827021' => 'tha', 'Thecc.01G327400' => 'tca', 'Thecc.04G229200' => 'tca', 'Thecc.05G037400' => 'tca', 'Thecc.09G318600' => 'tca', 'Thecc.09G318700' => 'tca', 'Thhalv10006238m.g' => 'esa', 'Thhalv10014321m.g' => 'esa', 'Thhalv10014335m.g' => 'esa', 'Thhalv10015826m.g' => 'esa', 'Thhalv10017107m.g' => 'esa', 'Thhalv10017180m.g' => 'esa', 'Thhalv10029339m.g' => 'esa', 'TPR.G1699' => 'tpr', 'TPR.G23609' => 'tpr', 'TPR.G3081' => 'tpr', 'TPR.G40397' => 'tpr', 'TPR.G5522' => 'tpr', 'TPR.G5618' => 'tpr', 'TPR.G5626' => 'tpr', 'TWI09G1632' => 'twi', 'TWI23G1230' => 'twi', 'TWI53G1064' => 'twi', 'TWI59G0751' => 'twi', 'TWI74G0947' => 'twi', 'TWI77G0337' => 'twi', 'TWI79G1254' => 'twi', 'unitig_0.g2341' => 'ugi', 'unitig_26.g10006' => 'ugi', 'unitig_26.g10008' => 'ugi', 'unitig_26.g9192' => 'ugi', 'vmacro14547' => 'vma', 'vmacro15333' => 'vma', 'vmacro18743' => 'vma', 'vmacro20166' => 'vma', 'VMungo0331G0523' => 'vmu', 'VMungo0331G1202' => 'vmu', 'VMungo0720G1228' => 'vmu', 'VMungo0720G1514' => 'vmu', 'VMungo1080G0169' => 'vmu', 'VMungo1127G1475' => 'vmu', 'VMungo1383G1208' => 'vmu', 'VMungo1383G1698' => 'vmu', 'Zm00001eb012270' => 'zma', 'Zm00001eb054100' => 'zma', 'Zm00001eb063350' => 'zma', 'Zm00001eb328560' => 'zma', 'Zm00001eb342820' => 'zma', 'Zm00001eb362210' => 'zma', 'Zm00001eb397730' => 'zma', 'Zm00001eb399750' => 'zma' ), 'gf_id' => 'HOM05D000959', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000959' ), 'data_identifier' => 'HOM05D000959', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000959', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '622', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p07100' => 'bna', 'A03p11720' => 'bna', 'A05p08300' => 'bna', 'A05p13380' => 'bna', 'A09p54130' => 'bna', 'A10p16690' => 'bna', 'A10p16700' => 'bna', 'A10p33390' => 'bna', 'Aa31LG10G16020' => 'aar', 'Aa31LG1G11810' => 'aar', 'Aa31LG1G11830' => 'aar', 'Aa31LG1G22510' => 'aar', 'Aa31LG5G4890' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5793' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2310' => 'aag', 'Actinidia08499' => 'ach', 'Actinidia11262' => 'ach', 'Actinidia23926' => 'ach', 'Actinidia34420' => 'ach', 'Actinidia36970' => 'ach', 'Ah.02g111220' => 'amhyb', 'Ah.15g097750' => 'amhyb', 'AL4G27500' => 'aly', 'AL6G11470' => 'aly', 'AL8G35950' => 'aly', 'AL8G35960' => 'aly', 'AL8G35970' => 'aly', 'Aqoxy1G00912' => 'aox', 'Aqoxy2G02253' => 'aox', 'Aqoxy2G02411' => 'aox', 'Aqoxy5G00485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BZ66YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K8ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM4FUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6BF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HFV7XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25JBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0YNNV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MAKK6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P70IT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP2Z6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V61LZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YWP64R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3S9AI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7PGHH' => 'arhy', 'AT2G32150' => 'ath', 'AT3G62040' => 'ath', 'AT5G02230' => 'ath', 'AT5G59480' => 'ath', 'AT5G59490' => 'ath', 'ATR0332G060' => 'atr', 'ATR0559G190' => 'atr', 'ATR0693G294' => 'atr', 'Atru.chr3.3975' => 'acertr', 'Atru.chr3.3976' => 'acertr', 'Atru.chr3.3977' => 'acertr', 'Atru.chr4.2498' => 'acertr', 'Atru.chr5.838' => 'acertr', 'Atru.chr8.1990' => 'acertr', 'Atru.chr8.1991' => 'acertr', 'Atru.chr8.1992' => 'acertr', 'AUR62001759' => 'cqu', 'AUR62009545' => 'cqu', 'AUR62010474' => 'cqu', 'AUR62025820' => 'cqu', 'AUR62030422' => 'cqu', 'AUR62033605' => 'cqu', 'AUR62038615' => 'cqu', 'AUR62041347' => 'cqu', 'BcaB01g04574' => 'bca', 'BcaB02g09263' => 'bca', 'BcaB02g10453' => 'bca', 'BcaB05g22513' => 'bca', 'BcaB08g36253' => 'bca', 'BcaB08g36254' => 'bca', 'BcaC01g06519' => 'bca', 'BcaC02g11889' => 'bca', 'BcaC03g14010' => 'bca', 'BcaC03g18439' => 'bca', 'BcaC04g19765' => 'bca', 'BcaC09g48432' => 'bca', 'BcaNung07302' => 'bca', 'BolC2t06040H' => 'bol', 'BolC2t07346H' => 'bol', 'BolC3t13817H' => 'bol', 'BolC4t22625H' => 'bol', 'BolC4t23297H' => 'bol', 'BolC8t51278H' => 'bol', 'BolC9t58050H' => 'bol', 'BolC9t58051H' => 'bol', 'BolC9t60163H' => 'bol', 'BraA02t04712Z' => 'bra', 'BraA02t05791Z' => 'bra', 'BraA03t10483Z' => 'bra', 'BraA05t19795Z' => 'bra', 'BraA05t20276Z' => 'bra', 'BraA09t40827Z' => 'bra', 'BraA10t43750Z' => 'bra', 'BraA10t43751Z' => 'bra', 'BraA10t45370Z' => 'bra', 'C02p00400' => 'bna', 'C02p12460' => 'bna', 'C03p13680' => 'bna', 'C04p10270' => 'bna', 'C04p17500' => 'bna', 'C08p37010' => 'bna', 'C09p51880' => 'bna', 'C09p51890' => 'bna', 'C09p74300' => 'bna', 'CAN.G179.26' => 'can', 'CAN.G3384.1' => 'can', 'CAN.G394.68' => 'can', 'CAN.G907.13' => 'can', 'CANSAT11G0012' => 'cansat', 'CANSAT25G1586' => 'cansat', 'CANSAT35G0735' => 'cansat', 'CANSAT54G0556' => 'cansat', 'CANSAT64G0356' => 'cansat', 'CANSAT78G2042' => 'cansat', 'CARHR125920' => 'chi', 'CARHR131910' => 'chi', 'CARHR172390' => 'chi', 'CARHR211140' => 'chi', 'CARHR285850' => 'chi', 'CARHR285860' => 'chi', 'Carub.0004s1347' => 'cru', 'Carub.0004s1960' => 'cru', 'Carub.0005s2880' => 'cru', 'Carub.0006s0107' => 'cru', 'Carub.0008s2015' => 'cru', 'Carub.0008s2016' => 'cru', 'Carub.0008s2017' => 'cru', 'Ca_01315_v3' => 'car', 'Ca_05063_v3' => 'car', 'Ca_10231_v3' => 'car', 'Ca_10913_v3' => 'car', 'Ca_19156_v3' => 'car', 'Ca_23644_v3' => 'car', 'Ca_26735_v3' => 'car', 'Cc01_g13130' => 'ccan', 'Cc02_g21690' => 'ccan', 'Cc03_g03600' => 'ccan', 'Cc06_g02510' => 'ccan', 'CDE02G1265' => 'cde', 'CDE05G0415' => 'cde', 'CDE08G1082' => 'cde', 'Cfa005780' => 'cfa', 'Cfa011522' => 'cfa', 'Cfa011523' => 'cfa', 'Cfa015627' => 'cfa', 'Cfa017359' => 'cfa', 'Ciclev10005687m.g' => 'ccl', 'Ciclev10012173m.g' => 'ccl', 'Ciclev10021621m.g' => 'ccl', 'Ciclev10028968m.g' => 'ccl', 'Ciclev10029907m.g' => 'ccl', 'CiPaw.01G164800' => 'cil', 'CiPaw.07G083700' => 'cil', 'CiPaw.07G127000' => 'cil', 'CiPaw.07G136900' => 'cil', 'CiPaw.08G081700' => 'cil', 'CiPaw.09G194600' => 'cil', 'CiPaw.10G146500' => 'cil', 'CiPaw.13G091500' => 'cil', 'CiPaw.13G091600' => 'cil', 'ClCG00G003390' => 'cla', 'ClCG01G007220' => 'cla', 'ClCG03G001370' => 'cla', 'ClCG04G008100' => 'cla', 'ClCG06G006110' => 'cla', 'ClCG06G006130' => 'cla', 'ClCG10G021210' => 'cla', 'COL.COLO4_07648' => 'col', 'COL.COLO4_07650' => 'col', 'COL.COLO4_07651' => 'col', 'COL.COLO4_14780' => 'col', 'COL.COLO4_18546' => 'col', 'COL.COLO4_18547' => 'col', 'COL.COLO4_23103' => 'col', 'COL.COLO4_30419' => 'col', 'COL.COLO4_34232' => 'col', 'Cpa.g.sc169.20' => 'cpa', 'Cpa.g.sc57.45' => 'cpa', 'Cpa.g.sc58.124' => 'cpa', 'Cpa.g.sc58.125' => 'cpa', 'Cpa.g.sc81.118' => 'cpa', 'Cpa.g.sc81.119' => 'cpa', 'Cre12.g524700' => 'cre', 'CsaV3_1G034430' => 'csa', 'CsaV3_1G034440' => 'csa', 'CsaV3_1G034450' => 'csa', 'CsaV3_3G034830' => 'csa', 'CsaV3_4G025090' => 'csa', 'CsaV3_5G018660' => 'csa', 'CsaV3_6G038160' => 'csa', 'CSS0003447' => 'camsi', 'CSS0017840' => 'camsi', 'CSS0019260' => 'camsi', 'CSS0040375' => 'camsi', 'CSS0042533' => 'camsi', 'DCAR_005960' => 'dca', 'DCAR_012104' => 'dca', 'DCAR_012105' => 'dca', 'DCAR_012293' => 'dca', 'DCAR_015632' => 'dca', 'DCAR_024602' => 'dca', 'DCAR_028752' => 'dca', 'Dinv06261' => 'din', 'Dinv13982' => 'din', 'Dinv17029' => 'din', 'Dinv18463' => 'din', 'Dinv33181' => 'din', 'Dinv35585' => 'din', 'Dinv37161' => 'din', 'Dinv42977' => 'din', 'Dinv43122' => 'din', 'Dinv44517' => 'din', 'Duzib093G0256' => 'dzi', 'Duzib106G1254' => 'dzi', 'Duzib128G1789' => 'dzi', 'Duzib133G0633' => 'dzi', 'Duzib138G0510' => 'dzi', 'Duzib150G1084' => 'dzi', 'Duzib168G0488' => 'dzi', 'Duzib168G1523' => 'dzi', 'Duzib170G0133' => 'dzi', 'ECA234G1433' => 'eca', 'ECA236G1432' => 'eca', 'ECA236G2256' => 'eca', 'ECA236G2365' => 'eca', 'ECA236G4830' => 'eca', 'ECA248G1505' => 'eca', 'EL10Ac3g06431' => 'bvu', 'EL10Ac5g12577' => 'bvu', 'EL10Ac6g13533' => 'bvu', 'EL10Ac7g16045' => 'bvu', 'Eucgr.A01281' => 'egr', 'Eucgr.B02326' => 'egr', 'Eucgr.H03532' => 'egr', 'Eucgr.K00553' => 'egr', 'Eucgr.K03116' => 'egr', 'FAN02G3963' => 'fan', 'FAN05G0438' => 'fan', 'FAN09G2434' => 'fan', 'FAN12G3984' => 'fan', 'FAN14G0798' => 'fan', 'FAN17G0652' => 'fan', 'FAN19G1988' => 'fan', 'FAN22G0632' => 'fan', 'FAN23G0387' => 'fan', 'FAN26G1323' => 'fan', 'FAN28G0666' => 'fan', 'FvH4_1g26080' => 'fve', 'FvH4_3g36780' => 'fve', 'FvH4_4g15270' => 'fve', 'FvH4_6g13490' => 'fve', 'Glyma.01G098700' => 'gma', 'Glyma.03G065900' => 'gma', 'Glyma.03G073754' => 'gma', 'Glyma.03G073758' => 'gma', 'Glyma.03G083200' => 'gma', 'Glyma.03G225500' => 'gma', 'Glyma.05G037766' => 'gma', 'Glyma.07G133500' => 'gma', 'Glyma.10G139400' => 'gma', 'Glyma.10G248900' => 'gma', 'Glyma.11G137800' => 'gma', 'Glyma.12G061300' => 'gma', 'Glyma.13G337900' => 'gma', 'Glyma.15G036600' => 'gma', 'Glyma.18G182800' => 'gma', 'Glyma.19G222500' => 'gma', 'Glyma.20G144800' => 'gma', 'Gohir.A01G222000' => 'ghi', 'Gohir.A03G044000' => 'ghi', 'Gohir.A03G044100' => 'ghi', 'Gohir.A04G083100' => 'ghi', 'Gohir.A07G127200' => 'ghi', 'Gohir.A07G132400' => 'ghi', 'Gohir.A08G000700' => 'ghi', 'Gohir.A11G327300' => 'ghi', 'Gohir.D01G211500' => 'ghi', 'Gohir.D03G123400' => 'ghi', 'Gohir.D03G123500' => 'ghi', 'Gohir.D04G121800' => 'ghi', 'Gohir.D07G131500' => 'ghi', 'Gohir.D07G136600' => 'ghi', 'Gohir.D08G011600' => 'ghi', 'Gohir.D11G346200' => 'ghi', 'Gorai.001G142800' => 'gra', 'Gorai.001G148700' => 'gra', 'Gorai.002G257300' => 'gra', 'Gorai.003G130000' => 'gra', 'Gorai.003G130100' => 'gra', 'Gorai.004G005300' => 'gra', 'Gorai.007G376500' => 'gra', 'Gorai.012G104700' => 'gra', 'GSVIVG01017946001' => 'vvi', 'GSVIVG01024928001' => 'vvi', 'GSVIVG01028227001' => 'vvi', 'GSVIVG01034151001' => 'vvi', 'HanXRQChr05g0135031' => 'han', 'HanXRQChr05g0135041' => 'han', 'HanXRQChr05g0140021' => 'han', 'HanXRQChr06g0178981' => 'han', 'HanXRQChr07g0188251' => 'han', 'HanXRQChr08g0235311' => 'han', 'HanXRQChr09g0271011' => 'han', 'HanXRQChr10g0293321' => 'han', 'HanXRQChr13g0388171' => 'han', 'Haze_00916' => 'cav', 'Haze_05063' => 'cav', 'Haze_20814' => 'cav', 'Haze_24128' => 'cav', 'Hma1.2p1_0745F.1_g212010' => 'hma', 'Hma1.2p1_0757F.1_g213260' => 'hma', 'Hma1.2p1_0936F.1_g238840' => 'hma', 'Hma1.2p1_1735F.1_g299890' => 'hma', 'Hma1.2p1_1861F.1_g305685' => 'hma', 'HPP92_003397' => 'vpl', 'HPP92_012597' => 'vpl', 'HPP92_015520' => 'vpl', 'HPP92_015539' => 'vpl', 'HPP92_020373' => 'vpl', 'Hund04938' => 'sun', 'Hund10677' => 'sun', 'Hund11033' => 'sun', 'Hund12155' => 'sun', 'Lalb_Chr01g0022551' => 'lal', 'Lalb_Chr03g0042341' => 'lal', 'Lalb_Chr07g0192931' => 'lal', 'Lalb_Chr12g0209551' => 'lal', 'Lalb_Chr19g0125251' => 'lal', 'Lalb_Chr19g0137891' => 'lal', 'Lalb_Chr21g0304641' => 'lal', 'Lalb_Chr21g0309881' => 'lal', 'Lj1A5T12' => 'lonja', 'Lj1C148G10' => 'lonja', 'Lj2A93T83' => 'lonja', 'Lj3A738G68' => 'lonja', 'Lj3C966T1' => 'lonja', 'Lj3g0018958' => 'lja', 'Lj3g0021831' => 'lja', 'Lj3g0025443' => 'lja', 'Lj4g0026809' => 'lja', 'Lj5g0012558' => 'lja', 'Lj5g0021586' => 'lja', 'Lsat_1_v5_gn_5_156840' => 'lsa', 'Lsat_1_v5_gn_8_73460' => 'lsa', 'Lsat_1_v5_gn_8_73481' => 'lsa', 'Lsat_1_v5_gn_9_31601' => 'lsa', 'Lsat_1_v5_gn_9_77320' => 'lsa', 'Manes.01G171300' => 'mes', 'Manes.01G171400' => 'mes', 'Manes.01G236100' => 'mes', 'Manes.02G130500' => 'mes', 'Manes.02G130600' => 'mes', 'Manes.03G180200' => 'mes', 'Manes.05G007000' => 'mes', 'Manes.08G084400' => 'mes', 'Manes.09G092600' => 'mes', 'Manes.15G027900' => 'mes', 'MBI04_g40948_MAGBIO' => 'mbi', 'MBI14_g12123_MAGBIO' => 'mbi', 'MBI18_g28915_MAGBIO' => 'mbi', 'MCO09G053' => 'mco', 'MCO11G782' => 'mco', 'MCO15G215' => 'mco', 'MD03G1088500' => 'mdo', 'MD03G1088600' => 'mdo', 'MD04G1130800' => 'mdo', 'MD09G1291700' => 'mdo', 'MD11G1097500' => 'mdo', 'MD11G1097600' => 'mdo', 'MD12G1143900' => 'mdo', 'MD13G1191400' => 'mdo', 'MD16G1191500' => 'mdo', 'Medtr1g085570' => 'mtr', 'Medtr1g104610' => 'mtr', 'Medtr2g097520' => 'mtr', 'Medtr4g021800' => 'mtr', 'Medtr4g021825' => 'mtr', 'Medtr4g064270' => 'mtr', 'Medtr4g064380' => 'mtr', 'Medtr7g062150' => 'mtr', 'MELO3C003138.2' => 'cme', 'MELO3C005187.2' => 'cme', 'MELO3C009252.2' => 'cme', 'MELO3C014481.2' => 'cme', 'MELO3C020616.2' => 'cme', 'MELO3C020617.2' => 'cme', 'MELO3C020618.2' => 'cme', 'Migut.G00328' => 'egut', 'Migut.J00320' => 'egut', 'Migut.L01000' => 'egut', 'Migut.L01953' => 'egut', 'MSTRG.10253' => 'ama', 'MSTRG.19077' => 'ama', 'MSTRG.26780' => 'ama', 'MSTRG.4023' => 'ama', 'MSTRG.5655' => 'ama', 'MSTRG.9992' => 'ama', 'Nitab4.5_0000043g0310' => 'nta', 'Nitab4.5_0000463g0080' => 'nta', 'Nitab4.5_0000705g0170' => 'nta', 'Nitab4.5_0001326g0060' => 'nta', 'Nitab4.5_0001628g0030' => 'nta', 'Nitab4.5_0002103g0110' => 'nta', 'Nitab4.5_0002946g0030' => 'nta', 'Nitab4.5_0004639g0030' => 'nta', 'Nn2g11149' => 'nnu', 'Nn2g13389' => 'nnu', 'Nn4g25326' => 'nnu', 'Nn4g26290' => 'nnu', 'Nn5g29865' => 'nnu', 'Oeu004163.1' => 'oeu', 'Oeu006901.1' => 'oeu', 'Oeu010096.1' => 'oeu', 'Oeu024340.1' => 'oeu', 'Oeu048369.1' => 'oeu', 'Os01g0973000' => 'osa', 'Os03g0273800' => 'osa', 'Os03g0701200' => 'osa', 'Os03g0834050' => 'osa', 'Os07g0634400' => 'osa', 'Peaxi162Scf00092g01414' => 'pax', 'Peaxi162Scf00165g00818' => 'pax', 'Peaxi162Scf00309g00516' => 'pax', 'Peaxi162Scf00774g00218' => 'pax', 'PGR004G1824' => 'pgr', 'PGR004G2606' => 'pgr', 'PGR031G2716' => 'pgr', 'PGR102G2460' => 'pgr', 'PGR142G2599' => 'pgr', 'PGSC0003DMG400000843' => 'stu', 'PGSC0003DMG400008829' => 'stu', 'PGSC0003DMG400030418' => 'stu', 'PGSC0003DMG400031834' => 'stu', 'PGSC0003DMG401028300' => 'stu', 'PGSC0003DMG402028300' => 'stu', 'Phvul.001G219300' => 'pvu', 'Phvul.007G056000' => 'pvu', 'Phvul.007G208000' => 'pvu', 'Phvul.008G119500' => 'pvu', 'Phvul.010G011200' => 'pvu', 'Phvul.010G014800' => 'pvu', 'Phvul.011G062900' => 'pvu', 'Phvul.L007043' => 'pvu', 'Potri.001G242300' => 'ptr', 'Potri.002G185300' => 'ptr', 'Potri.006G086900' => 'ptr', 'Potri.008G151700' => 'ptr', 'Potri.009G033500' => 'ptr', 'Potri.010G089300' => 'ptr', 'Potri.014G110800' => 'ptr', 'Pp3c27_8130' => 'ppa', 'Pp3c6_27410' => 'ppa', 'PRCOL_00001659' => 'pco', 'PRCOL_00001927' => 'pco', 'PRCOL_00003649' => 'pco', 'Prupe.1G011600' => 'ppe', 'Prupe.3G000800' => 'ppe', 'Prupe.3G001100' => 'ppe', 'Prupe.6G072700' => 'ppe', 'Prupe.6G072800' => 'ppe', 'Prupe.6G257300' => 'ppe', 'Prupe.8G033000' => 'ppe', 'Psat0s2633g0080' => 'psa', 'Psat0s3396g0080' => 'psa', 'Psat0s3396g0200' => 'psa', 'Psat3g139080' => 'psa', 'Psat5g285080' => 'psa', 'Psat6g157760' => 'psa', 'Psat6g208440' => 'psa', 'Psat7g215320' => 'psa', 'Psat7g215400' => 'psa', 'Psat7g235600' => 'psa', 'Psat7g235760' => 'psa', 'PSO063G4603' => 'pso', 'PSO210G0182' => 'pso', 'PSO210G0196' => 'pso', 'PSO339G0394' => 'pso', 'PSO339G4127' => 'pso', 'PSO513G0064' => 'pso', 'PSO761G0079' => 'pso', 'QL01p031003' => 'qlo', 'QL01p031078' => 'qlo', 'QL06p003004' => 'qlo', 'QL07p048731' => 'qlo', 'QL09p037427' => 'qlo', 'RcHm_v2.0_Chr3g0466361' => 'rch', 'RcHm_v2.0_Chr3g0485571' => 'rch', 'RcHm_v2.0_Chr4g0416551' => 'rch', 'RcHm_v2.0_Chr5g0065831' => 'rch', 'Rhsim01G0230500' => 'rsi', 'Rhsim05G0194000' => 'rsi', 'Rhsim08G0250400' => 'rsi', 'Sabra02G0131000' => 'sbr', 'Sabra06G0066300' => 'sbr', 'Sabra08G0115500' => 'sbr', 'Sabra09G0023900' => 'sbr', 'Sabra10G0054000' => 'sbr', 'Sabra14G0081500' => 'sbr', 'Sabra16G0147100' => 'sbr', 'SalBow2G2957' => 'sbo', 'SalBow4G3320' => 'sbo', 'SalBow8G1894' => 'sbo', 'Sc07g0007950' => 'sci', 'Sc12g0001360' => 'sci', 'Sc13g0004330' => 'sci', 'Sc20g0005010' => 'sci', 'Sed0000361' => 'sed', 'Sed0001706' => 'sed', 'Sed0002422' => 'sed', 'Sed0004029' => 'sed', 'Sed0004602' => 'sed', 'Sed0004943' => 'sed', 'Sed0008646' => 'sed', 'Sed0023313' => 'sed', 'Sed0024843' => 'sed', 'SEGI_00081' => 'sgi', 'SEGI_00947' => 'sgi', 'SEGI_04046' => 'sgi', 'SEGI_06880' => 'sgi', 'SEGI_09736' => 'sgi', 'SEGI_12741' => 'sgi', 'SEGI_14530' => 'sgi', 'SEGI_20705' => 'sgi', 'SEGI_26088' => 'sgi', 'SEGI_28323' => 'sgi', 'SEGI_33343' => 'sgi', 'SGA_v2.0_scaffold126G33775' => 'sas', 'SGA_v2.0_scaffold2G01337' => 'sas', 'SGA_v2.0_scaffold38G15006' => 'sas', 'SGA_v2.0_scaffold39G15264' => 'sas', 'SGA_v2.0_scaffold453G51880' => 'sas', 'SHI12696' => 'shi', 'SMO367G1096' => 'smo', 'Solyc01g068630.3' => 'sly', 'Solyc05g011880.3' => 'sly', 'Solyc06g076300.3' => 'sly', 'Solyc09g010940.4' => 'sly', 'Solyc09g075890.3' => 'sly', 'Sopen01g030560' => 'spe', 'Sopen05g006630' => 'spe', 'Sopen06g032720' => 'spe', 'Sopen09g005660' => 'spe', 'Sopen09g030690' => 'spe', 'Sp4g14540' => 'spa', 'Sp4g20030' => 'spa', 'Sp5g01320' => 'spa', 'Sp6g21170' => 'spa', 'Sp6g21180' => 'spa', 'Sp6g21190' => 'spa', 'Sp6g40220' => 'spa', 'TAR362G0122' => 'tar', 'TAR362G1338' => 'tar', 'TAR369G0590' => 'tar', 'TAR371G0824' => 'tar', 'TAR622G1429' => 'tar', 'TAR623G0734' => 'tar', 'TAR625G0441' => 'tar', 'TAR629G0976' => 'tar', 'TAR633G1195' => 'tar', 'TAR636G2660' => 'tar', 'THA.LOC104799440' => 'tha', 'THA.LOC104800966' => 'tha', 'THA.LOC104806559' => 'tha', 'THA.LOC104810765' => 'tha', 'THA.LOC104816266' => 'tha', 'THA.LOC104817419' => 'tha', 'THA.LOC104827021' => 'tha', 'Thecc.01G327400' => 'tca', 'Thecc.04G229200' => 'tca', 'Thecc.05G037400' => 'tca', 'Thecc.09G318600' => 'tca', 'Thecc.09G318700' => 'tca', 'Thhalv10006238m.g' => 'esa', 'Thhalv10014321m.g' => 'esa', 'Thhalv10014335m.g' => 'esa', 'Thhalv10015826m.g' => 'esa', 'Thhalv10017107m.g' => 'esa', 'Thhalv10017180m.g' => 'esa', 'Thhalv10029339m.g' => 'esa', 'TPR.G1699' => 'tpr', 'TPR.G23609' => 'tpr', 'TPR.G3081' => 'tpr', 'TPR.G40397' => 'tpr', 'TPR.G5522' => 'tpr', 'TPR.G5618' => 'tpr', 'TPR.G5626' => 'tpr', 'TWI09G1632' => 'twi', 'TWI23G1230' => 'twi', 'TWI53G1064' => 'twi', 'TWI59G0751' => 'twi', 'TWI74G0947' => 'twi', 'TWI77G0337' => 'twi', 'TWI79G1254' => 'twi', 'unitig_0.g2341' => 'ugi', 'unitig_26.g10006' => 'ugi', 'unitig_26.g10008' => 'ugi', 'unitig_26.g9192' => 'ugi', 'vmacro14547' => 'vma', 'vmacro15333' => 'vma', 'vmacro18743' => 'vma', 'vmacro20166' => 'vma', 'VMungo0331G0523' => 'vmu', 'VMungo0331G1202' => 'vmu', 'VMungo0720G1228' => 'vmu', 'VMungo0720G1514' => 'vmu', 'VMungo1080G0169' => 'vmu', 'VMungo1127G1475' => 'vmu', 'VMungo1383G1208' => 'vmu', 'VMungo1383G1698' => 'vmu', 'Zm00001eb012270' => 'zma', 'Zm00001eb054100' => 'zma', 'Zm00001eb063350' => 'zma', 'Zm00001eb328560' => 'zma', 'Zm00001eb342820' => 'zma', 'Zm00001eb362210' => 'zma', 'Zm00001eb397730' => 'zma', 'Zm00001eb399750' => 'zma' ) $gf_id = 'HOM05D000959' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000959' ) $data_identifier = 'HOM05D000959' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 5, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 5, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 10, 'mbi' => (int) 3, 'mco' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 2, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 3, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 11, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399750' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000959', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '622', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p07100' => 'bna', 'A03p11720' => 'bna', 'A05p08300' => 'bna', 'A05p13380' => 'bna', 'A09p54130' => 'bna', 'A10p16690' => 'bna', 'A10p16700' => 'bna', 'A10p33390' => 'bna', 'Aa31LG10G16020' => 'aar', 'Aa31LG1G11810' => 'aar', 'Aa31LG1G11830' => 'aar', 'Aa31LG1G22510' => 'aar', 'Aa31LG5G4890' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5793' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2310' => 'aag', 'Actinidia08499' => 'ach', 'Actinidia11262' => 'ach', 'Actinidia23926' => 'ach', 'Actinidia34420' => 'ach', 'Actinidia36970' => 'ach', 'Ah.02g111220' => 'amhyb', 'Ah.15g097750' => 'amhyb', 'AL4G27500' => 'aly', 'AL6G11470' => 'aly', 'AL8G35950' => 'aly', 'AL8G35960' => 'aly', 'AL8G35970' => 'aly', 'Aqoxy1G00912' => 'aox', 'Aqoxy2G02253' => 'aox', 'Aqoxy2G02411' => 'aox', 'Aqoxy5G00485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BZ66YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K8ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM4FUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6BF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HFV7XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25JBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0YNNV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MAKK6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P70IT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP2Z6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V61LZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YWP64R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3S9AI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7PGHH' => 'arhy', 'AT2G32150' => 'ath', 'AT3G62040' => 'ath', 'AT5G02230' => 'ath', 'AT5G59480' => 'ath', 'AT5G59490' => 'ath', 'ATR0332G060' => 'atr', 'ATR0559G190' => 'atr', 'ATR0693G294' => 'atr', 'Atru.chr3.3975' => 'acertr', 'Atru.chr3.3976' => 'acertr', 'Atru.chr3.3977' => 'acertr', 'Atru.chr4.2498' => 'acertr', 'Atru.chr5.838' => 'acertr', 'Atru.chr8.1990' => 'acertr', 'Atru.chr8.1991' => 'acertr', 'Atru.chr8.1992' => 'acertr', 'AUR62001759' => 'cqu', 'AUR62009545' => 'cqu', 'AUR62010474' => 'cqu', 'AUR62025820' => 'cqu', 'AUR62030422' => 'cqu', 'AUR62033605' => 'cqu', 'AUR62038615' => 'cqu', 'AUR62041347' => 'cqu', 'BcaB01g04574' => 'bca', 'BcaB02g09263' => 'bca', 'BcaB02g10453' => 'bca', 'BcaB05g22513' => 'bca', 'BcaB08g36253' => 'bca', 'BcaB08g36254' => 'bca', 'BcaC01g06519' => 'bca', 'BcaC02g11889' => 'bca', 'BcaC03g14010' => 'bca', 'BcaC03g18439' => 'bca', 'BcaC04g19765' => 'bca', 'BcaC09g48432' => 'bca', 'BcaNung07302' => 'bca', 'BolC2t06040H' => 'bol', 'BolC2t07346H' => 'bol', 'BolC3t13817H' => 'bol', 'BolC4t22625H' => 'bol', 'BolC4t23297H' => 'bol', 'BolC8t51278H' => 'bol', 'BolC9t58050H' => 'bol', 'BolC9t58051H' => 'bol', 'BolC9t60163H' => 'bol', 'BraA02t04712Z' => 'bra', 'BraA02t05791Z' => 'bra', 'BraA03t10483Z' => 'bra', 'BraA05t19795Z' => 'bra', 'BraA05t20276Z' => 'bra', 'BraA09t40827Z' => 'bra', 'BraA10t43750Z' => 'bra', 'BraA10t43751Z' => 'bra', 'BraA10t45370Z' => 'bra', 'C02p00400' => 'bna', 'C02p12460' => 'bna', 'C03p13680' => 'bna', 'C04p10270' => 'bna', 'C04p17500' => 'bna', 'C08p37010' => 'bna', 'C09p51880' => 'bna', 'C09p51890' => 'bna', 'C09p74300' => 'bna', 'CAN.G179.26' => 'can', 'CAN.G3384.1' => 'can', 'CAN.G394.68' => 'can', 'CAN.G907.13' => 'can', 'CANSAT11G0012' => 'cansat', 'CANSAT25G1586' => 'cansat', 'CANSAT35G0735' => 'cansat', 'CANSAT54G0556' => 'cansat', 'CANSAT64G0356' => 'cansat', 'CANSAT78G2042' => 'cansat', 'CARHR125920' => 'chi', 'CARHR131910' => 'chi', 'CARHR172390' => 'chi', 'CARHR211140' => 'chi', 'CARHR285850' => 'chi', 'CARHR285860' => 'chi', 'Carub.0004s1347' => 'cru', 'Carub.0004s1960' => 'cru', 'Carub.0005s2880' => 'cru', 'Carub.0006s0107' => 'cru', 'Carub.0008s2015' => 'cru', 'Carub.0008s2016' => 'cru', 'Carub.0008s2017' => 'cru', 'Ca_01315_v3' => 'car', 'Ca_05063_v3' => 'car', 'Ca_10231_v3' => 'car', 'Ca_10913_v3' => 'car', 'Ca_19156_v3' => 'car', 'Ca_23644_v3' => 'car', 'Ca_26735_v3' => 'car', 'Cc01_g13130' => 'ccan', 'Cc02_g21690' => 'ccan', 'Cc03_g03600' => 'ccan', 'Cc06_g02510' => 'ccan', 'CDE02G1265' => 'cde', 'CDE05G0415' => 'cde', 'CDE08G1082' => 'cde', 'Cfa005780' => 'cfa', 'Cfa011522' => 'cfa', 'Cfa011523' => 'cfa', 'Cfa015627' => 'cfa', 'Cfa017359' => 'cfa', 'Ciclev10005687m.g' => 'ccl', 'Ciclev10012173m.g' => 'ccl', 'Ciclev10021621m.g' => 'ccl', 'Ciclev10028968m.g' => 'ccl', 'Ciclev10029907m.g' => 'ccl', 'CiPaw.01G164800' => 'cil', 'CiPaw.07G083700' => 'cil', 'CiPaw.07G127000' => 'cil', 'CiPaw.07G136900' => 'cil', 'CiPaw.08G081700' => 'cil', 'CiPaw.09G194600' => 'cil', 'CiPaw.10G146500' => 'cil', 'CiPaw.13G091500' => 'cil', 'CiPaw.13G091600' => 'cil', 'ClCG00G003390' => 'cla', 'ClCG01G007220' => 'cla', 'ClCG03G001370' => 'cla', 'ClCG04G008100' => 'cla', 'ClCG06G006110' => 'cla', 'ClCG06G006130' => 'cla', 'ClCG10G021210' => 'cla', 'COL.COLO4_07648' => 'col', 'COL.COLO4_07650' => 'col', 'COL.COLO4_07651' => 'col', 'COL.COLO4_14780' => 'col', 'COL.COLO4_18546' => 'col', 'COL.COLO4_18547' => 'col', 'COL.COLO4_23103' => 'col', 'COL.COLO4_30419' => 'col', 'COL.COLO4_34232' => 'col', 'Cpa.g.sc169.20' => 'cpa', 'Cpa.g.sc57.45' => 'cpa', 'Cpa.g.sc58.124' => 'cpa', 'Cpa.g.sc58.125' => 'cpa', 'Cpa.g.sc81.118' => 'cpa', 'Cpa.g.sc81.119' => 'cpa', 'Cre12.g524700' => 'cre', 'CsaV3_1G034430' => 'csa', 'CsaV3_1G034440' => 'csa', 'CsaV3_1G034450' => 'csa', 'CsaV3_3G034830' => 'csa', 'CsaV3_4G025090' => 'csa', 'CsaV3_5G018660' => 'csa', 'CsaV3_6G038160' => 'csa', 'CSS0003447' => 'camsi', 'CSS0017840' => 'camsi', 'CSS0019260' => 'camsi', 'CSS0040375' => 'camsi', 'CSS0042533' => 'camsi', 'DCAR_005960' => 'dca', 'DCAR_012104' => 'dca', 'DCAR_012105' => 'dca', 'DCAR_012293' => 'dca', 'DCAR_015632' => 'dca', 'DCAR_024602' => 'dca', 'DCAR_028752' => 'dca', 'Dinv06261' => 'din', 'Dinv13982' => 'din', 'Dinv17029' => 'din', 'Dinv18463' => 'din', 'Dinv33181' => 'din', 'Dinv35585' => 'din', 'Dinv37161' => 'din', 'Dinv42977' => 'din', 'Dinv43122' => 'din', 'Dinv44517' => 'din', 'Duzib093G0256' => 'dzi', 'Duzib106G1254' => 'dzi', 'Duzib128G1789' => 'dzi', 'Duzib133G0633' => 'dzi', 'Duzib138G0510' => 'dzi', 'Duzib150G1084' => 'dzi', 'Duzib168G0488' => 'dzi', 'Duzib168G1523' => 'dzi', 'Duzib170G0133' => 'dzi', 'ECA234G1433' => 'eca', 'ECA236G1432' => 'eca', 'ECA236G2256' => 'eca', 'ECA236G2365' => 'eca', 'ECA236G4830' => 'eca', 'ECA248G1505' => 'eca', 'EL10Ac3g06431' => 'bvu', 'EL10Ac5g12577' => 'bvu', 'EL10Ac6g13533' => 'bvu', 'EL10Ac7g16045' => 'bvu', 'Eucgr.A01281' => 'egr', 'Eucgr.B02326' => 'egr', 'Eucgr.H03532' => 'egr', 'Eucgr.K00553' => 'egr', 'Eucgr.K03116' => 'egr', 'FAN02G3963' => 'fan', 'FAN05G0438' => 'fan', 'FAN09G2434' => 'fan', 'FAN12G3984' => 'fan', 'FAN14G0798' => 'fan', 'FAN17G0652' => 'fan', 'FAN19G1988' => 'fan', 'FAN22G0632' => 'fan', 'FAN23G0387' => 'fan', 'FAN26G1323' => 'fan', 'FAN28G0666' => 'fan', 'FvH4_1g26080' => 'fve', 'FvH4_3g36780' => 'fve', 'FvH4_4g15270' => 'fve', 'FvH4_6g13490' => 'fve', 'Glyma.01G098700' => 'gma', 'Glyma.03G065900' => 'gma', 'Glyma.03G073754' => 'gma', 'Glyma.03G073758' => 'gma', 'Glyma.03G083200' => 'gma', 'Glyma.03G225500' => 'gma', 'Glyma.05G037766' => 'gma', 'Glyma.07G133500' => 'gma', 'Glyma.10G139400' => 'gma', 'Glyma.10G248900' => 'gma', 'Glyma.11G137800' => 'gma', 'Glyma.12G061300' => 'gma', 'Glyma.13G337900' => 'gma', 'Glyma.15G036600' => 'gma', 'Glyma.18G182800' => 'gma', 'Glyma.19G222500' => 'gma', 'Glyma.20G144800' => 'gma', 'Gohir.A01G222000' => 'ghi', 'Gohir.A03G044000' => 'ghi', 'Gohir.A03G044100' => 'ghi', 'Gohir.A04G083100' => 'ghi', 'Gohir.A07G127200' => 'ghi', 'Gohir.A07G132400' => 'ghi', 'Gohir.A08G000700' => 'ghi', 'Gohir.A11G327300' => 'ghi', 'Gohir.D01G211500' => 'ghi', 'Gohir.D03G123400' => 'ghi', 'Gohir.D03G123500' => 'ghi', 'Gohir.D04G121800' => 'ghi', 'Gohir.D07G131500' => 'ghi', 'Gohir.D07G136600' => 'ghi', 'Gohir.D08G011600' => 'ghi', 'Gohir.D11G346200' => 'ghi', 'Gorai.001G142800' => 'gra', 'Gorai.001G148700' => 'gra', 'Gorai.002G257300' => 'gra', 'Gorai.003G130000' => 'gra', 'Gorai.003G130100' => 'gra', 'Gorai.004G005300' => 'gra', 'Gorai.007G376500' => 'gra', 'Gorai.012G104700' => 'gra', 'GSVIVG01017946001' => 'vvi', 'GSVIVG01024928001' => 'vvi', 'GSVIVG01028227001' => 'vvi', 'GSVIVG01034151001' => 'vvi', 'HanXRQChr05g0135031' => 'han', 'HanXRQChr05g0135041' => 'han', 'HanXRQChr05g0140021' => 'han', 'HanXRQChr06g0178981' => 'han', 'HanXRQChr07g0188251' => 'han', 'HanXRQChr08g0235311' => 'han', 'HanXRQChr09g0271011' => 'han', 'HanXRQChr10g0293321' => 'han', 'HanXRQChr13g0388171' => 'han', 'Haze_00916' => 'cav', 'Haze_05063' => 'cav', 'Haze_20814' => 'cav', 'Haze_24128' => 'cav', 'Hma1.2p1_0745F.1_g212010' => 'hma', 'Hma1.2p1_0757F.1_g213260' => 'hma', 'Hma1.2p1_0936F.1_g238840' => 'hma', 'Hma1.2p1_1735F.1_g299890' => 'hma', 'Hma1.2p1_1861F.1_g305685' => 'hma', 'HPP92_003397' => 'vpl', 'HPP92_012597' => 'vpl', 'HPP92_015520' => 'vpl', 'HPP92_015539' => 'vpl', 'HPP92_020373' => 'vpl', 'Hund04938' => 'sun', 'Hund10677' => 'sun', 'Hund11033' => 'sun', 'Hund12155' => 'sun', 'Lalb_Chr01g0022551' => 'lal', 'Lalb_Chr03g0042341' => 'lal', 'Lalb_Chr07g0192931' => 'lal', 'Lalb_Chr12g0209551' => 'lal', 'Lalb_Chr19g0125251' => 'lal', 'Lalb_Chr19g0137891' => 'lal', 'Lalb_Chr21g0304641' => 'lal', 'Lalb_Chr21g0309881' => 'lal', 'Lj1A5T12' => 'lonja', 'Lj1C148G10' => 'lonja', 'Lj2A93T83' => 'lonja', 'Lj3A738G68' => 'lonja', 'Lj3C966T1' => 'lonja', 'Lj3g0018958' => 'lja', 'Lj3g0021831' => 'lja', 'Lj3g0025443' => 'lja', 'Lj4g0026809' => 'lja', 'Lj5g0012558' => 'lja', 'Lj5g0021586' => 'lja', 'Lsat_1_v5_gn_5_156840' => 'lsa', 'Lsat_1_v5_gn_8_73460' => 'lsa', 'Lsat_1_v5_gn_8_73481' => 'lsa', 'Lsat_1_v5_gn_9_31601' => 'lsa', 'Lsat_1_v5_gn_9_77320' => 'lsa', 'Manes.01G171300' => 'mes', 'Manes.01G171400' => 'mes', 'Manes.01G236100' => 'mes', 'Manes.02G130500' => 'mes', 'Manes.02G130600' => 'mes', 'Manes.03G180200' => 'mes', 'Manes.05G007000' => 'mes', 'Manes.08G084400' => 'mes', 'Manes.09G092600' => 'mes', 'Manes.15G027900' => 'mes', 'MBI04_g40948_MAGBIO' => 'mbi', 'MBI14_g12123_MAGBIO' => 'mbi', 'MBI18_g28915_MAGBIO' => 'mbi', 'MCO09G053' => 'mco', 'MCO11G782' => 'mco', 'MCO15G215' => 'mco', 'MD03G1088500' => 'mdo', 'MD03G1088600' => 'mdo', 'MD04G1130800' => 'mdo', 'MD09G1291700' => 'mdo', 'MD11G1097500' => 'mdo', 'MD11G1097600' => 'mdo', 'MD12G1143900' => 'mdo', 'MD13G1191400' => 'mdo', 'MD16G1191500' => 'mdo', 'Medtr1g085570' => 'mtr', 'Medtr1g104610' => 'mtr', 'Medtr2g097520' => 'mtr', 'Medtr4g021800' => 'mtr', 'Medtr4g021825' => 'mtr', 'Medtr4g064270' => 'mtr', 'Medtr4g064380' => 'mtr', 'Medtr7g062150' => 'mtr', 'MELO3C003138.2' => 'cme', 'MELO3C005187.2' => 'cme', 'MELO3C009252.2' => 'cme', 'MELO3C014481.2' => 'cme', 'MELO3C020616.2' => 'cme', 'MELO3C020617.2' => 'cme', 'MELO3C020618.2' => 'cme', 'Migut.G00328' => 'egut', 'Migut.J00320' => 'egut', 'Migut.L01000' => 'egut', 'Migut.L01953' => 'egut', 'MSTRG.10253' => 'ama', 'MSTRG.19077' => 'ama', 'MSTRG.26780' => 'ama', 'MSTRG.4023' => 'ama', 'MSTRG.5655' => 'ama', 'MSTRG.9992' => 'ama', 'Nitab4.5_0000043g0310' => 'nta', 'Nitab4.5_0000463g0080' => 'nta', 'Nitab4.5_0000705g0170' => 'nta', 'Nitab4.5_0001326g0060' => 'nta', 'Nitab4.5_0001628g0030' => 'nta', 'Nitab4.5_0002103g0110' => 'nta', 'Nitab4.5_0002946g0030' => 'nta', 'Nitab4.5_0004639g0030' => 'nta', 'Nn2g11149' => 'nnu', 'Nn2g13389' => 'nnu', 'Nn4g25326' => 'nnu', 'Nn4g26290' => 'nnu', 'Nn5g29865' => 'nnu', 'Oeu004163.1' => 'oeu', 'Oeu006901.1' => 'oeu', 'Oeu010096.1' => 'oeu', 'Oeu024340.1' => 'oeu', 'Oeu048369.1' => 'oeu', 'Os01g0973000' => 'osa', 'Os03g0273800' => 'osa', 'Os03g0701200' => 'osa', 'Os03g0834050' => 'osa', 'Os07g0634400' => 'osa', 'Peaxi162Scf00092g01414' => 'pax', 'Peaxi162Scf00165g00818' => 'pax', 'Peaxi162Scf00309g00516' => 'pax', 'Peaxi162Scf00774g00218' => 'pax', 'PGR004G1824' => 'pgr', 'PGR004G2606' => 'pgr', 'PGR031G2716' => 'pgr', 'PGR102G2460' => 'pgr', 'PGR142G2599' => 'pgr', 'PGSC0003DMG400000843' => 'stu', 'PGSC0003DMG400008829' => 'stu', 'PGSC0003DMG400030418' => 'stu', 'PGSC0003DMG400031834' => 'stu', 'PGSC0003DMG401028300' => 'stu', 'PGSC0003DMG402028300' => 'stu', 'Phvul.001G219300' => 'pvu', 'Phvul.007G056000' => 'pvu', 'Phvul.007G208000' => 'pvu', 'Phvul.008G119500' => 'pvu', 'Phvul.010G011200' => 'pvu', 'Phvul.010G014800' => 'pvu', 'Phvul.011G062900' => 'pvu', 'Phvul.L007043' => 'pvu', 'Potri.001G242300' => 'ptr', 'Potri.002G185300' => 'ptr', 'Potri.006G086900' => 'ptr', 'Potri.008G151700' => 'ptr', 'Potri.009G033500' => 'ptr', 'Potri.010G089300' => 'ptr', 'Potri.014G110800' => 'ptr', 'Pp3c27_8130' => 'ppa', 'Pp3c6_27410' => 'ppa', 'PRCOL_00001659' => 'pco', 'PRCOL_00001927' => 'pco', 'PRCOL_00003649' => 'pco', 'Prupe.1G011600' => 'ppe', 'Prupe.3G000800' => 'ppe', 'Prupe.3G001100' => 'ppe', 'Prupe.6G072700' => 'ppe', 'Prupe.6G072800' => 'ppe', 'Prupe.6G257300' => 'ppe', 'Prupe.8G033000' => 'ppe', 'Psat0s2633g0080' => 'psa', 'Psat0s3396g0080' => 'psa', 'Psat0s3396g0200' => 'psa', 'Psat3g139080' => 'psa', 'Psat5g285080' => 'psa', 'Psat6g157760' => 'psa', 'Psat6g208440' => 'psa', 'Psat7g215320' => 'psa', 'Psat7g215400' => 'psa', 'Psat7g235600' => 'psa', 'Psat7g235760' => 'psa', 'PSO063G4603' => 'pso', 'PSO210G0182' => 'pso', 'PSO210G0196' => 'pso', 'PSO339G0394' => 'pso', 'PSO339G4127' => 'pso', 'PSO513G0064' => 'pso', 'PSO761G0079' => 'pso', 'QL01p031003' => 'qlo', 'QL01p031078' => 'qlo', 'QL06p003004' => 'qlo', 'QL07p048731' => 'qlo', 'QL09p037427' => 'qlo', 'RcHm_v2.0_Chr3g0466361' => 'rch', 'RcHm_v2.0_Chr3g0485571' => 'rch', 'RcHm_v2.0_Chr4g0416551' => 'rch', 'RcHm_v2.0_Chr5g0065831' => 'rch', 'Rhsim01G0230500' => 'rsi', 'Rhsim05G0194000' => 'rsi', 'Rhsim08G0250400' => 'rsi', 'Sabra02G0131000' => 'sbr', 'Sabra06G0066300' => 'sbr', 'Sabra08G0115500' => 'sbr', 'Sabra09G0023900' => 'sbr', 'Sabra10G0054000' => 'sbr', 'Sabra14G0081500' => 'sbr', 'Sabra16G0147100' => 'sbr', 'SalBow2G2957' => 'sbo', 'SalBow4G3320' => 'sbo', 'SalBow8G1894' => 'sbo', 'Sc07g0007950' => 'sci', 'Sc12g0001360' => 'sci', 'Sc13g0004330' => 'sci', 'Sc20g0005010' => 'sci', 'Sed0000361' => 'sed', 'Sed0001706' => 'sed', 'Sed0002422' => 'sed', 'Sed0004029' => 'sed', 'Sed0004602' => 'sed', 'Sed0004943' => 'sed', 'Sed0008646' => 'sed', 'Sed0023313' => 'sed', 'Sed0024843' => 'sed', 'SEGI_00081' => 'sgi', 'SEGI_00947' => 'sgi', 'SEGI_04046' => 'sgi', 'SEGI_06880' => 'sgi', 'SEGI_09736' => 'sgi', 'SEGI_12741' => 'sgi', 'SEGI_14530' => 'sgi', 'SEGI_20705' => 'sgi', 'SEGI_26088' => 'sgi', 'SEGI_28323' => 'sgi', 'SEGI_33343' => 'sgi', 'SGA_v2.0_scaffold126G33775' => 'sas', 'SGA_v2.0_scaffold2G01337' => 'sas', 'SGA_v2.0_scaffold38G15006' => 'sas', 'SGA_v2.0_scaffold39G15264' => 'sas', 'SGA_v2.0_scaffold453G51880' => 'sas', 'SHI12696' => 'shi', 'SMO367G1096' => 'smo', 'Solyc01g068630.3' => 'sly', 'Solyc05g011880.3' => 'sly', 'Solyc06g076300.3' => 'sly', 'Solyc09g010940.4' => 'sly', 'Solyc09g075890.3' => 'sly', 'Sopen01g030560' => 'spe', 'Sopen05g006630' => 'spe', 'Sopen06g032720' => 'spe', 'Sopen09g005660' => 'spe', 'Sopen09g030690' => 'spe', 'Sp4g14540' => 'spa', 'Sp4g20030' => 'spa', 'Sp5g01320' => 'spa', 'Sp6g21170' => 'spa', 'Sp6g21180' => 'spa', 'Sp6g21190' => 'spa', 'Sp6g40220' => 'spa', 'TAR362G0122' => 'tar', 'TAR362G1338' => 'tar', 'TAR369G0590' => 'tar', 'TAR371G0824' => 'tar', 'TAR622G1429' => 'tar', 'TAR623G0734' => 'tar', 'TAR625G0441' => 'tar', 'TAR629G0976' => 'tar', 'TAR633G1195' => 'tar', 'TAR636G2660' => 'tar', 'THA.LOC104799440' => 'tha', 'THA.LOC104800966' => 'tha', 'THA.LOC104806559' => 'tha', 'THA.LOC104810765' => 'tha', 'THA.LOC104816266' => 'tha', 'THA.LOC104817419' => 'tha', 'THA.LOC104827021' => 'tha', 'Thecc.01G327400' => 'tca', 'Thecc.04G229200' => 'tca', 'Thecc.05G037400' => 'tca', 'Thecc.09G318600' => 'tca', 'Thecc.09G318700' => 'tca', 'Thhalv10006238m.g' => 'esa', 'Thhalv10014321m.g' => 'esa', 'Thhalv10014335m.g' => 'esa', 'Thhalv10015826m.g' => 'esa', 'Thhalv10017107m.g' => 'esa', 'Thhalv10017180m.g' => 'esa', 'Thhalv10029339m.g' => 'esa', 'TPR.G1699' => 'tpr', 'TPR.G23609' => 'tpr', 'TPR.G3081' => 'tpr', 'TPR.G40397' => 'tpr', 'TPR.G5522' => 'tpr', 'TPR.G5618' => 'tpr', 'TPR.G5626' => 'tpr', 'TWI09G1632' => 'twi', 'TWI23G1230' => 'twi', 'TWI53G1064' => 'twi', 'TWI59G0751' => 'twi', 'TWI74G0947' => 'twi', 'TWI77G0337' => 'twi', 'TWI79G1254' => 'twi', 'unitig_0.g2341' => 'ugi', 'unitig_26.g10006' => 'ugi', 'unitig_26.g10008' => 'ugi', 'unitig_26.g9192' => 'ugi', 'vmacro14547' => 'vma', 'vmacro15333' => 'vma', 'vmacro18743' => 'vma', 'vmacro20166' => 'vma', 'VMungo0331G0523' => 'vmu', 'VMungo0331G1202' => 'vmu', 'VMungo0720G1228' => 'vmu', 'VMungo0720G1514' => 'vmu', 'VMungo1080G0169' => 'vmu', 'VMungo1127G1475' => 'vmu', 'VMungo1383G1208' => 'vmu', 'VMungo1383G1698' => 'vmu', 'Zm00001eb012270' => 'zma', 'Zm00001eb054100' => 'zma', 'Zm00001eb063350' => 'zma', 'Zm00001eb328560' => 'zma', 'Zm00001eb342820' => 'zma', 'Zm00001eb362210' => 'zma', 'Zm00001eb397730' => 'zma', 'Zm00001eb399750' => 'zma' ), 'gf_id' => 'HOM05D000959', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000959' ), 'data_identifier' => 'HOM05D000959', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000959', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '622', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p07100' => 'bna', 'A03p11720' => 'bna', 'A05p08300' => 'bna', 'A05p13380' => 'bna', 'A09p54130' => 'bna', 'A10p16690' => 'bna', 'A10p16700' => 'bna', 'A10p33390' => 'bna', 'Aa31LG10G16020' => 'aar', 'Aa31LG1G11810' => 'aar', 'Aa31LG1G11830' => 'aar', 'Aa31LG1G22510' => 'aar', 'Aa31LG5G4890' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5793' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2310' => 'aag', 'Actinidia08499' => 'ach', 'Actinidia11262' => 'ach', 'Actinidia23926' => 'ach', 'Actinidia34420' => 'ach', 'Actinidia36970' => 'ach', 'Ah.02g111220' => 'amhyb', 'Ah.15g097750' => 'amhyb', 'AL4G27500' => 'aly', 'AL6G11470' => 'aly', 'AL8G35950' => 'aly', 'AL8G35960' => 'aly', 'AL8G35970' => 'aly', 'Aqoxy1G00912' => 'aox', 'Aqoxy2G02253' => 'aox', 'Aqoxy2G02411' => 'aox', 'Aqoxy5G00485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BZ66YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K8ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM4FUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6BF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HFV7XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25JBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0YNNV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MAKK6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P70IT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP2Z6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V61LZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YWP64R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3S9AI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7PGHH' => 'arhy', 'AT2G32150' => 'ath', 'AT3G62040' => 'ath', 'AT5G02230' => 'ath', 'AT5G59480' => 'ath', 'AT5G59490' => 'ath', 'ATR0332G060' => 'atr', 'ATR0559G190' => 'atr', 'ATR0693G294' => 'atr', 'Atru.chr3.3975' => 'acertr', 'Atru.chr3.3976' => 'acertr', 'Atru.chr3.3977' => 'acertr', 'Atru.chr4.2498' => 'acertr', 'Atru.chr5.838' => 'acertr', 'Atru.chr8.1990' => 'acertr', 'Atru.chr8.1991' => 'acertr', 'Atru.chr8.1992' => 'acertr', 'AUR62001759' => 'cqu', 'AUR62009545' => 'cqu', 'AUR62010474' => 'cqu', 'AUR62025820' => 'cqu', 'AUR62030422' => 'cqu', 'AUR62033605' => 'cqu', 'AUR62038615' => 'cqu', 'AUR62041347' => 'cqu', 'BcaB01g04574' => 'bca', 'BcaB02g09263' => 'bca', 'BcaB02g10453' => 'bca', 'BcaB05g22513' => 'bca', 'BcaB08g36253' => 'bca', 'BcaB08g36254' => 'bca', 'BcaC01g06519' => 'bca', 'BcaC02g11889' => 'bca', 'BcaC03g14010' => 'bca', 'BcaC03g18439' => 'bca', 'BcaC04g19765' => 'bca', 'BcaC09g48432' => 'bca', 'BcaNung07302' => 'bca', 'BolC2t06040H' => 'bol', 'BolC2t07346H' => 'bol', 'BolC3t13817H' => 'bol', 'BolC4t22625H' => 'bol', 'BolC4t23297H' => 'bol', 'BolC8t51278H' => 'bol', 'BolC9t58050H' => 'bol', 'BolC9t58051H' => 'bol', 'BolC9t60163H' => 'bol', 'BraA02t04712Z' => 'bra', 'BraA02t05791Z' => 'bra', 'BraA03t10483Z' => 'bra', 'BraA05t19795Z' => 'bra', 'BraA05t20276Z' => 'bra', 'BraA09t40827Z' => 'bra', 'BraA10t43750Z' => 'bra', 'BraA10t43751Z' => 'bra', 'BraA10t45370Z' => 'bra', 'C02p00400' => 'bna', 'C02p12460' => 'bna', 'C03p13680' => 'bna', 'C04p10270' => 'bna', 'C04p17500' => 'bna', 'C08p37010' => 'bna', 'C09p51880' => 'bna', 'C09p51890' => 'bna', 'C09p74300' => 'bna', 'CAN.G179.26' => 'can', 'CAN.G3384.1' => 'can', 'CAN.G394.68' => 'can', 'CAN.G907.13' => 'can', 'CANSAT11G0012' => 'cansat', 'CANSAT25G1586' => 'cansat', 'CANSAT35G0735' => 'cansat', 'CANSAT54G0556' => 'cansat', 'CANSAT64G0356' => 'cansat', 'CANSAT78G2042' => 'cansat', 'CARHR125920' => 'chi', 'CARHR131910' => 'chi', 'CARHR172390' => 'chi', 'CARHR211140' => 'chi', 'CARHR285850' => 'chi', 'CARHR285860' => 'chi', 'Carub.0004s1347' => 'cru', 'Carub.0004s1960' => 'cru', 'Carub.0005s2880' => 'cru', 'Carub.0006s0107' => 'cru', 'Carub.0008s2015' => 'cru', 'Carub.0008s2016' => 'cru', 'Carub.0008s2017' => 'cru', 'Ca_01315_v3' => 'car', 'Ca_05063_v3' => 'car', 'Ca_10231_v3' => 'car', 'Ca_10913_v3' => 'car', 'Ca_19156_v3' => 'car', 'Ca_23644_v3' => 'car', 'Ca_26735_v3' => 'car', 'Cc01_g13130' => 'ccan', 'Cc02_g21690' => 'ccan', 'Cc03_g03600' => 'ccan', 'Cc06_g02510' => 'ccan', 'CDE02G1265' => 'cde', 'CDE05G0415' => 'cde', 'CDE08G1082' => 'cde', 'Cfa005780' => 'cfa', 'Cfa011522' => 'cfa', 'Cfa011523' => 'cfa', 'Cfa015627' => 'cfa', 'Cfa017359' => 'cfa', 'Ciclev10005687m.g' => 'ccl', 'Ciclev10012173m.g' => 'ccl', 'Ciclev10021621m.g' => 'ccl', 'Ciclev10028968m.g' => 'ccl', 'Ciclev10029907m.g' => 'ccl', 'CiPaw.01G164800' => 'cil', 'CiPaw.07G083700' => 'cil', 'CiPaw.07G127000' => 'cil', 'CiPaw.07G136900' => 'cil', 'CiPaw.08G081700' => 'cil', 'CiPaw.09G194600' => 'cil', 'CiPaw.10G146500' => 'cil', 'CiPaw.13G091500' => 'cil', 'CiPaw.13G091600' => 'cil', 'ClCG00G003390' => 'cla', 'ClCG01G007220' => 'cla', 'ClCG03G001370' => 'cla', 'ClCG04G008100' => 'cla', 'ClCG06G006110' => 'cla', 'ClCG06G006130' => 'cla', 'ClCG10G021210' => 'cla', 'COL.COLO4_07648' => 'col', 'COL.COLO4_07650' => 'col', 'COL.COLO4_07651' => 'col', 'COL.COLO4_14780' => 'col', 'COL.COLO4_18546' => 'col', 'COL.COLO4_18547' => 'col', 'COL.COLO4_23103' => 'col', 'COL.COLO4_30419' => 'col', 'COL.COLO4_34232' => 'col', 'Cpa.g.sc169.20' => 'cpa', 'Cpa.g.sc57.45' => 'cpa', 'Cpa.g.sc58.124' => 'cpa', 'Cpa.g.sc58.125' => 'cpa', 'Cpa.g.sc81.118' => 'cpa', 'Cpa.g.sc81.119' => 'cpa', 'Cre12.g524700' => 'cre', 'CsaV3_1G034430' => 'csa', 'CsaV3_1G034440' => 'csa', 'CsaV3_1G034450' => 'csa', 'CsaV3_3G034830' => 'csa', 'CsaV3_4G025090' => 'csa', 'CsaV3_5G018660' => 'csa', 'CsaV3_6G038160' => 'csa', 'CSS0003447' => 'camsi', 'CSS0017840' => 'camsi', 'CSS0019260' => 'camsi', 'CSS0040375' => 'camsi', 'CSS0042533' => 'camsi', 'DCAR_005960' => 'dca', 'DCAR_012104' => 'dca', 'DCAR_012105' => 'dca', 'DCAR_012293' => 'dca', 'DCAR_015632' => 'dca', 'DCAR_024602' => 'dca', 'DCAR_028752' => 'dca', 'Dinv06261' => 'din', 'Dinv13982' => 'din', 'Dinv17029' => 'din', 'Dinv18463' => 'din', 'Dinv33181' => 'din', 'Dinv35585' => 'din', 'Dinv37161' => 'din', 'Dinv42977' => 'din', 'Dinv43122' => 'din', 'Dinv44517' => 'din', 'Duzib093G0256' => 'dzi', 'Duzib106G1254' => 'dzi', 'Duzib128G1789' => 'dzi', 'Duzib133G0633' => 'dzi', 'Duzib138G0510' => 'dzi', 'Duzib150G1084' => 'dzi', 'Duzib168G0488' => 'dzi', 'Duzib168G1523' => 'dzi', 'Duzib170G0133' => 'dzi', 'ECA234G1433' => 'eca', 'ECA236G1432' => 'eca', 'ECA236G2256' => 'eca', 'ECA236G2365' => 'eca', 'ECA236G4830' => 'eca', 'ECA248G1505' => 'eca', 'EL10Ac3g06431' => 'bvu', 'EL10Ac5g12577' => 'bvu', 'EL10Ac6g13533' => 'bvu', 'EL10Ac7g16045' => 'bvu', 'Eucgr.A01281' => 'egr', 'Eucgr.B02326' => 'egr', 'Eucgr.H03532' => 'egr', 'Eucgr.K00553' => 'egr', 'Eucgr.K03116' => 'egr', 'FAN02G3963' => 'fan', 'FAN05G0438' => 'fan', 'FAN09G2434' => 'fan', 'FAN12G3984' => 'fan', 'FAN14G0798' => 'fan', 'FAN17G0652' => 'fan', 'FAN19G1988' => 'fan', 'FAN22G0632' => 'fan', 'FAN23G0387' => 'fan', 'FAN26G1323' => 'fan', 'FAN28G0666' => 'fan', 'FvH4_1g26080' => 'fve', 'FvH4_3g36780' => 'fve', 'FvH4_4g15270' => 'fve', 'FvH4_6g13490' => 'fve', 'Glyma.01G098700' => 'gma', 'Glyma.03G065900' => 'gma', 'Glyma.03G073754' => 'gma', 'Glyma.03G073758' => 'gma', 'Glyma.03G083200' => 'gma', 'Glyma.03G225500' => 'gma', 'Glyma.05G037766' => 'gma', 'Glyma.07G133500' => 'gma', 'Glyma.10G139400' => 'gma', 'Glyma.10G248900' => 'gma', 'Glyma.11G137800' => 'gma', 'Glyma.12G061300' => 'gma', 'Glyma.13G337900' => 'gma', 'Glyma.15G036600' => 'gma', 'Glyma.18G182800' => 'gma', 'Glyma.19G222500' => 'gma', 'Glyma.20G144800' => 'gma', 'Gohir.A01G222000' => 'ghi', 'Gohir.A03G044000' => 'ghi', 'Gohir.A03G044100' => 'ghi', 'Gohir.A04G083100' => 'ghi', 'Gohir.A07G127200' => 'ghi', 'Gohir.A07G132400' => 'ghi', 'Gohir.A08G000700' => 'ghi', 'Gohir.A11G327300' => 'ghi', 'Gohir.D01G211500' => 'ghi', 'Gohir.D03G123400' => 'ghi', 'Gohir.D03G123500' => 'ghi', 'Gohir.D04G121800' => 'ghi', 'Gohir.D07G131500' => 'ghi', 'Gohir.D07G136600' => 'ghi', 'Gohir.D08G011600' => 'ghi', 'Gohir.D11G346200' => 'ghi', 'Gorai.001G142800' => 'gra', 'Gorai.001G148700' => 'gra', 'Gorai.002G257300' => 'gra', 'Gorai.003G130000' => 'gra', 'Gorai.003G130100' => 'gra', 'Gorai.004G005300' => 'gra', 'Gorai.007G376500' => 'gra', 'Gorai.012G104700' => 'gra', 'GSVIVG01017946001' => 'vvi', 'GSVIVG01024928001' => 'vvi', 'GSVIVG01028227001' => 'vvi', 'GSVIVG01034151001' => 'vvi', 'HanXRQChr05g0135031' => 'han', 'HanXRQChr05g0135041' => 'han', 'HanXRQChr05g0140021' => 'han', 'HanXRQChr06g0178981' => 'han', 'HanXRQChr07g0188251' => 'han', 'HanXRQChr08g0235311' => 'han', 'HanXRQChr09g0271011' => 'han', 'HanXRQChr10g0293321' => 'han', 'HanXRQChr13g0388171' => 'han', 'Haze_00916' => 'cav', 'Haze_05063' => 'cav', 'Haze_20814' => 'cav', 'Haze_24128' => 'cav', 'Hma1.2p1_0745F.1_g212010' => 'hma', 'Hma1.2p1_0757F.1_g213260' => 'hma', 'Hma1.2p1_0936F.1_g238840' => 'hma', 'Hma1.2p1_1735F.1_g299890' => 'hma', 'Hma1.2p1_1861F.1_g305685' => 'hma', 'HPP92_003397' => 'vpl', 'HPP92_012597' => 'vpl', 'HPP92_015520' => 'vpl', 'HPP92_015539' => 'vpl', 'HPP92_020373' => 'vpl', 'Hund04938' => 'sun', 'Hund10677' => 'sun', 'Hund11033' => 'sun', 'Hund12155' => 'sun', 'Lalb_Chr01g0022551' => 'lal', 'Lalb_Chr03g0042341' => 'lal', 'Lalb_Chr07g0192931' => 'lal', 'Lalb_Chr12g0209551' => 'lal', 'Lalb_Chr19g0125251' => 'lal', 'Lalb_Chr19g0137891' => 'lal', 'Lalb_Chr21g0304641' => 'lal', 'Lalb_Chr21g0309881' => 'lal', 'Lj1A5T12' => 'lonja', 'Lj1C148G10' => 'lonja', 'Lj2A93T83' => 'lonja', 'Lj3A738G68' => 'lonja', 'Lj3C966T1' => 'lonja', 'Lj3g0018958' => 'lja', 'Lj3g0021831' => 'lja', 'Lj3g0025443' => 'lja', 'Lj4g0026809' => 'lja', 'Lj5g0012558' => 'lja', 'Lj5g0021586' => 'lja', 'Lsat_1_v5_gn_5_156840' => 'lsa', 'Lsat_1_v5_gn_8_73460' => 'lsa', 'Lsat_1_v5_gn_8_73481' => 'lsa', 'Lsat_1_v5_gn_9_31601' => 'lsa', 'Lsat_1_v5_gn_9_77320' => 'lsa', 'Manes.01G171300' => 'mes', 'Manes.01G171400' => 'mes', 'Manes.01G236100' => 'mes', 'Manes.02G130500' => 'mes', 'Manes.02G130600' => 'mes', 'Manes.03G180200' => 'mes', 'Manes.05G007000' => 'mes', 'Manes.08G084400' => 'mes', 'Manes.09G092600' => 'mes', 'Manes.15G027900' => 'mes', 'MBI04_g40948_MAGBIO' => 'mbi', 'MBI14_g12123_MAGBIO' => 'mbi', 'MBI18_g28915_MAGBIO' => 'mbi', 'MCO09G053' => 'mco', 'MCO11G782' => 'mco', 'MCO15G215' => 'mco', 'MD03G1088500' => 'mdo', 'MD03G1088600' => 'mdo', 'MD04G1130800' => 'mdo', 'MD09G1291700' => 'mdo', 'MD11G1097500' => 'mdo', 'MD11G1097600' => 'mdo', 'MD12G1143900' => 'mdo', 'MD13G1191400' => 'mdo', 'MD16G1191500' => 'mdo', 'Medtr1g085570' => 'mtr', 'Medtr1g104610' => 'mtr', 'Medtr2g097520' => 'mtr', 'Medtr4g021800' => 'mtr', 'Medtr4g021825' => 'mtr', 'Medtr4g064270' => 'mtr', 'Medtr4g064380' => 'mtr', 'Medtr7g062150' => 'mtr', 'MELO3C003138.2' => 'cme', 'MELO3C005187.2' => 'cme', 'MELO3C009252.2' => 'cme', 'MELO3C014481.2' => 'cme', 'MELO3C020616.2' => 'cme', 'MELO3C020617.2' => 'cme', 'MELO3C020618.2' => 'cme', 'Migut.G00328' => 'egut', 'Migut.J00320' => 'egut', 'Migut.L01000' => 'egut', 'Migut.L01953' => 'egut', 'MSTRG.10253' => 'ama', 'MSTRG.19077' => 'ama', 'MSTRG.26780' => 'ama', 'MSTRG.4023' => 'ama', 'MSTRG.5655' => 'ama', 'MSTRG.9992' => 'ama', 'Nitab4.5_0000043g0310' => 'nta', 'Nitab4.5_0000463g0080' => 'nta', 'Nitab4.5_0000705g0170' => 'nta', 'Nitab4.5_0001326g0060' => 'nta', 'Nitab4.5_0001628g0030' => 'nta', 'Nitab4.5_0002103g0110' => 'nta', 'Nitab4.5_0002946g0030' => 'nta', 'Nitab4.5_0004639g0030' => 'nta', 'Nn2g11149' => 'nnu', 'Nn2g13389' => 'nnu', 'Nn4g25326' => 'nnu', 'Nn4g26290' => 'nnu', 'Nn5g29865' => 'nnu', 'Oeu004163.1' => 'oeu', 'Oeu006901.1' => 'oeu', 'Oeu010096.1' => 'oeu', 'Oeu024340.1' => 'oeu', 'Oeu048369.1' => 'oeu', 'Os01g0973000' => 'osa', 'Os03g0273800' => 'osa', 'Os03g0701200' => 'osa', 'Os03g0834050' => 'osa', 'Os07g0634400' => 'osa', 'Peaxi162Scf00092g01414' => 'pax', 'Peaxi162Scf00165g00818' => 'pax', 'Peaxi162Scf00309g00516' => 'pax', 'Peaxi162Scf00774g00218' => 'pax', 'PGR004G1824' => 'pgr', 'PGR004G2606' => 'pgr', 'PGR031G2716' => 'pgr', 'PGR102G2460' => 'pgr', 'PGR142G2599' => 'pgr', 'PGSC0003DMG400000843' => 'stu', 'PGSC0003DMG400008829' => 'stu', 'PGSC0003DMG400030418' => 'stu', 'PGSC0003DMG400031834' => 'stu', 'PGSC0003DMG401028300' => 'stu', 'PGSC0003DMG402028300' => 'stu', 'Phvul.001G219300' => 'pvu', 'Phvul.007G056000' => 'pvu', 'Phvul.007G208000' => 'pvu', 'Phvul.008G119500' => 'pvu', 'Phvul.010G011200' => 'pvu', 'Phvul.010G014800' => 'pvu', 'Phvul.011G062900' => 'pvu', 'Phvul.L007043' => 'pvu', 'Potri.001G242300' => 'ptr', 'Potri.002G185300' => 'ptr', 'Potri.006G086900' => 'ptr', 'Potri.008G151700' => 'ptr', 'Potri.009G033500' => 'ptr', 'Potri.010G089300' => 'ptr', 'Potri.014G110800' => 'ptr', 'Pp3c27_8130' => 'ppa', 'Pp3c6_27410' => 'ppa', 'PRCOL_00001659' => 'pco', 'PRCOL_00001927' => 'pco', 'PRCOL_00003649' => 'pco', 'Prupe.1G011600' => 'ppe', 'Prupe.3G000800' => 'ppe', 'Prupe.3G001100' => 'ppe', 'Prupe.6G072700' => 'ppe', 'Prupe.6G072800' => 'ppe', 'Prupe.6G257300' => 'ppe', 'Prupe.8G033000' => 'ppe', 'Psat0s2633g0080' => 'psa', 'Psat0s3396g0080' => 'psa', 'Psat0s3396g0200' => 'psa', 'Psat3g139080' => 'psa', 'Psat5g285080' => 'psa', 'Psat6g157760' => 'psa', 'Psat6g208440' => 'psa', 'Psat7g215320' => 'psa', 'Psat7g215400' => 'psa', 'Psat7g235600' => 'psa', 'Psat7g235760' => 'psa', 'PSO063G4603' => 'pso', 'PSO210G0182' => 'pso', 'PSO210G0196' => 'pso', 'PSO339G0394' => 'pso', 'PSO339G4127' => 'pso', 'PSO513G0064' => 'pso', 'PSO761G0079' => 'pso', 'QL01p031003' => 'qlo', 'QL01p031078' => 'qlo', 'QL06p003004' => 'qlo', 'QL07p048731' => 'qlo', 'QL09p037427' => 'qlo', 'RcHm_v2.0_Chr3g0466361' => 'rch', 'RcHm_v2.0_Chr3g0485571' => 'rch', 'RcHm_v2.0_Chr4g0416551' => 'rch', 'RcHm_v2.0_Chr5g0065831' => 'rch', 'Rhsim01G0230500' => 'rsi', 'Rhsim05G0194000' => 'rsi', 'Rhsim08G0250400' => 'rsi', 'Sabra02G0131000' => 'sbr', 'Sabra06G0066300' => 'sbr', 'Sabra08G0115500' => 'sbr', 'Sabra09G0023900' => 'sbr', 'Sabra10G0054000' => 'sbr', 'Sabra14G0081500' => 'sbr', 'Sabra16G0147100' => 'sbr', 'SalBow2G2957' => 'sbo', 'SalBow4G3320' => 'sbo', 'SalBow8G1894' => 'sbo', 'Sc07g0007950' => 'sci', 'Sc12g0001360' => 'sci', 'Sc13g0004330' => 'sci', 'Sc20g0005010' => 'sci', 'Sed0000361' => 'sed', 'Sed0001706' => 'sed', 'Sed0002422' => 'sed', 'Sed0004029' => 'sed', 'Sed0004602' => 'sed', 'Sed0004943' => 'sed', 'Sed0008646' => 'sed', 'Sed0023313' => 'sed', 'Sed0024843' => 'sed', 'SEGI_00081' => 'sgi', 'SEGI_00947' => 'sgi', 'SEGI_04046' => 'sgi', 'SEGI_06880' => 'sgi', 'SEGI_09736' => 'sgi', 'SEGI_12741' => 'sgi', 'SEGI_14530' => 'sgi', 'SEGI_20705' => 'sgi', 'SEGI_26088' => 'sgi', 'SEGI_28323' => 'sgi', 'SEGI_33343' => 'sgi', 'SGA_v2.0_scaffold126G33775' => 'sas', 'SGA_v2.0_scaffold2G01337' => 'sas', 'SGA_v2.0_scaffold38G15006' => 'sas', 'SGA_v2.0_scaffold39G15264' => 'sas', 'SGA_v2.0_scaffold453G51880' => 'sas', 'SHI12696' => 'shi', 'SMO367G1096' => 'smo', 'Solyc01g068630.3' => 'sly', 'Solyc05g011880.3' => 'sly', 'Solyc06g076300.3' => 'sly', 'Solyc09g010940.4' => 'sly', 'Solyc09g075890.3' => 'sly', 'Sopen01g030560' => 'spe', 'Sopen05g006630' => 'spe', 'Sopen06g032720' => 'spe', 'Sopen09g005660' => 'spe', 'Sopen09g030690' => 'spe', 'Sp4g14540' => 'spa', 'Sp4g20030' => 'spa', 'Sp5g01320' => 'spa', 'Sp6g21170' => 'spa', 'Sp6g21180' => 'spa', 'Sp6g21190' => 'spa', 'Sp6g40220' => 'spa', 'TAR362G0122' => 'tar', 'TAR362G1338' => 'tar', 'TAR369G0590' => 'tar', 'TAR371G0824' => 'tar', 'TAR622G1429' => 'tar', 'TAR623G0734' => 'tar', 'TAR625G0441' => 'tar', 'TAR629G0976' => 'tar', 'TAR633G1195' => 'tar', 'TAR636G2660' => 'tar', 'THA.LOC104799440' => 'tha', 'THA.LOC104800966' => 'tha', 'THA.LOC104806559' => 'tha', 'THA.LOC104810765' => 'tha', 'THA.LOC104816266' => 'tha', 'THA.LOC104817419' => 'tha', 'THA.LOC104827021' => 'tha', 'Thecc.01G327400' => 'tca', 'Thecc.04G229200' => 'tca', 'Thecc.05G037400' => 'tca', 'Thecc.09G318600' => 'tca', 'Thecc.09G318700' => 'tca', 'Thhalv10006238m.g' => 'esa', 'Thhalv10014321m.g' => 'esa', 'Thhalv10014335m.g' => 'esa', 'Thhalv10015826m.g' => 'esa', 'Thhalv10017107m.g' => 'esa', 'Thhalv10017180m.g' => 'esa', 'Thhalv10029339m.g' => 'esa', 'TPR.G1699' => 'tpr', 'TPR.G23609' => 'tpr', 'TPR.G3081' => 'tpr', 'TPR.G40397' => 'tpr', 'TPR.G5522' => 'tpr', 'TPR.G5618' => 'tpr', 'TPR.G5626' => 'tpr', 'TWI09G1632' => 'twi', 'TWI23G1230' => 'twi', 'TWI53G1064' => 'twi', 'TWI59G0751' => 'twi', 'TWI74G0947' => 'twi', 'TWI77G0337' => 'twi', 'TWI79G1254' => 'twi', 'unitig_0.g2341' => 'ugi', 'unitig_26.g10006' => 'ugi', 'unitig_26.g10008' => 'ugi', 'unitig_26.g9192' => 'ugi', 'vmacro14547' => 'vma', 'vmacro15333' => 'vma', 'vmacro18743' => 'vma', 'vmacro20166' => 'vma', 'VMungo0331G0523' => 'vmu', 'VMungo0331G1202' => 'vmu', 'VMungo0720G1228' => 'vmu', 'VMungo0720G1514' => 'vmu', 'VMungo1080G0169' => 'vmu', 'VMungo1127G1475' => 'vmu', 'VMungo1383G1208' => 'vmu', 'VMungo1383G1698' => 'vmu', 'Zm00001eb012270' => 'zma', 'Zm00001eb054100' => 'zma', 'Zm00001eb063350' => 'zma', 'Zm00001eb328560' => 'zma', 'Zm00001eb342820' => 'zma', 'Zm00001eb362210' => 'zma', 'Zm00001eb397730' => 'zma', 'Zm00001eb399750' => 'zma' ) $gf_id = 'HOM05D000959' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000959' ) $data_identifier = 'HOM05D000959' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 5, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 5, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 10, 'mbi' => (int) 3, 'mco' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 2, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 3, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 11, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399750' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000959', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '622', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p07100' => 'bna', 'A03p11720' => 'bna', 'A05p08300' => 'bna', 'A05p13380' => 'bna', 'A09p54130' => 'bna', 'A10p16690' => 'bna', 'A10p16700' => 'bna', 'A10p33390' => 'bna', 'Aa31LG10G16020' => 'aar', 'Aa31LG1G11810' => 'aar', 'Aa31LG1G11830' => 'aar', 'Aa31LG1G22510' => 'aar', 'Aa31LG5G4890' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5793' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2310' => 'aag', 'Actinidia08499' => 'ach', 'Actinidia11262' => 'ach', 'Actinidia23926' => 'ach', 'Actinidia34420' => 'ach', 'Actinidia36970' => 'ach', 'Ah.02g111220' => 'amhyb', 'Ah.15g097750' => 'amhyb', 'AL4G27500' => 'aly', 'AL6G11470' => 'aly', 'AL8G35950' => 'aly', 'AL8G35960' => 'aly', 'AL8G35970' => 'aly', 'Aqoxy1G00912' => 'aox', 'Aqoxy2G02253' => 'aox', 'Aqoxy2G02411' => 'aox', 'Aqoxy5G00485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BZ66YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K8ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM4FUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6BF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HFV7XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25JBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0YNNV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MAKK6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P70IT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP2Z6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V61LZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YWP64R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3S9AI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7PGHH' => 'arhy', 'AT2G32150' => 'ath', 'AT3G62040' => 'ath', 'AT5G02230' => 'ath', 'AT5G59480' => 'ath', 'AT5G59490' => 'ath', 'ATR0332G060' => 'atr', 'ATR0559G190' => 'atr', 'ATR0693G294' => 'atr', 'Atru.chr3.3975' => 'acertr', 'Atru.chr3.3976' => 'acertr', 'Atru.chr3.3977' => 'acertr', 'Atru.chr4.2498' => 'acertr', 'Atru.chr5.838' => 'acertr', 'Atru.chr8.1990' => 'acertr', 'Atru.chr8.1991' => 'acertr', 'Atru.chr8.1992' => 'acertr', 'AUR62001759' => 'cqu', 'AUR62009545' => 'cqu', 'AUR62010474' => 'cqu', 'AUR62025820' => 'cqu', 'AUR62030422' => 'cqu', 'AUR62033605' => 'cqu', 'AUR62038615' => 'cqu', 'AUR62041347' => 'cqu', 'BcaB01g04574' => 'bca', 'BcaB02g09263' => 'bca', 'BcaB02g10453' => 'bca', 'BcaB05g22513' => 'bca', 'BcaB08g36253' => 'bca', 'BcaB08g36254' => 'bca', 'BcaC01g06519' => 'bca', 'BcaC02g11889' => 'bca', 'BcaC03g14010' => 'bca', 'BcaC03g18439' => 'bca', 'BcaC04g19765' => 'bca', 'BcaC09g48432' => 'bca', 'BcaNung07302' => 'bca', 'BolC2t06040H' => 'bol', 'BolC2t07346H' => 'bol', 'BolC3t13817H' => 'bol', 'BolC4t22625H' => 'bol', 'BolC4t23297H' => 'bol', 'BolC8t51278H' => 'bol', 'BolC9t58050H' => 'bol', 'BolC9t58051H' => 'bol', 'BolC9t60163H' => 'bol', 'BraA02t04712Z' => 'bra', 'BraA02t05791Z' => 'bra', 'BraA03t10483Z' => 'bra', 'BraA05t19795Z' => 'bra', 'BraA05t20276Z' => 'bra', 'BraA09t40827Z' => 'bra', 'BraA10t43750Z' => 'bra', 'BraA10t43751Z' => 'bra', 'BraA10t45370Z' => 'bra', 'C02p00400' => 'bna', 'C02p12460' => 'bna', 'C03p13680' => 'bna', 'C04p10270' => 'bna', 'C04p17500' => 'bna', 'C08p37010' => 'bna', 'C09p51880' => 'bna', 'C09p51890' => 'bna', 'C09p74300' => 'bna', 'CAN.G179.26' => 'can', 'CAN.G3384.1' => 'can', 'CAN.G394.68' => 'can', 'CAN.G907.13' => 'can', 'CANSAT11G0012' => 'cansat', 'CANSAT25G1586' => 'cansat', 'CANSAT35G0735' => 'cansat', 'CANSAT54G0556' => 'cansat', 'CANSAT64G0356' => 'cansat', 'CANSAT78G2042' => 'cansat', 'CARHR125920' => 'chi', 'CARHR131910' => 'chi', 'CARHR172390' => 'chi', 'CARHR211140' => 'chi', 'CARHR285850' => 'chi', 'CARHR285860' => 'chi', 'Carub.0004s1347' => 'cru', 'Carub.0004s1960' => 'cru', 'Carub.0005s2880' => 'cru', 'Carub.0006s0107' => 'cru', 'Carub.0008s2015' => 'cru', 'Carub.0008s2016' => 'cru', 'Carub.0008s2017' => 'cru', 'Ca_01315_v3' => 'car', 'Ca_05063_v3' => 'car', 'Ca_10231_v3' => 'car', 'Ca_10913_v3' => 'car', 'Ca_19156_v3' => 'car', 'Ca_23644_v3' => 'car', 'Ca_26735_v3' => 'car', 'Cc01_g13130' => 'ccan', 'Cc02_g21690' => 'ccan', 'Cc03_g03600' => 'ccan', 'Cc06_g02510' => 'ccan', 'CDE02G1265' => 'cde', 'CDE05G0415' => 'cde', 'CDE08G1082' => 'cde', 'Cfa005780' => 'cfa', 'Cfa011522' => 'cfa', 'Cfa011523' => 'cfa', 'Cfa015627' => 'cfa', 'Cfa017359' => 'cfa', 'Ciclev10005687m.g' => 'ccl', 'Ciclev10012173m.g' => 'ccl', 'Ciclev10021621m.g' => 'ccl', 'Ciclev10028968m.g' => 'ccl', 'Ciclev10029907m.g' => 'ccl', 'CiPaw.01G164800' => 'cil', 'CiPaw.07G083700' => 'cil', 'CiPaw.07G127000' => 'cil', 'CiPaw.07G136900' => 'cil', 'CiPaw.08G081700' => 'cil', 'CiPaw.09G194600' => 'cil', 'CiPaw.10G146500' => 'cil', 'CiPaw.13G091500' => 'cil', 'CiPaw.13G091600' => 'cil', 'ClCG00G003390' => 'cla', 'ClCG01G007220' => 'cla', 'ClCG03G001370' => 'cla', 'ClCG04G008100' => 'cla', 'ClCG06G006110' => 'cla', 'ClCG06G006130' => 'cla', 'ClCG10G021210' => 'cla', 'COL.COLO4_07648' => 'col', 'COL.COLO4_07650' => 'col', 'COL.COLO4_07651' => 'col', 'COL.COLO4_14780' => 'col', 'COL.COLO4_18546' => 'col', 'COL.COLO4_18547' => 'col', 'COL.COLO4_23103' => 'col', 'COL.COLO4_30419' => 'col', 'COL.COLO4_34232' => 'col', 'Cpa.g.sc169.20' => 'cpa', 'Cpa.g.sc57.45' => 'cpa', 'Cpa.g.sc58.124' => 'cpa', 'Cpa.g.sc58.125' => 'cpa', 'Cpa.g.sc81.118' => 'cpa', 'Cpa.g.sc81.119' => 'cpa', 'Cre12.g524700' => 'cre', 'CsaV3_1G034430' => 'csa', 'CsaV3_1G034440' => 'csa', 'CsaV3_1G034450' => 'csa', 'CsaV3_3G034830' => 'csa', 'CsaV3_4G025090' => 'csa', 'CsaV3_5G018660' => 'csa', 'CsaV3_6G038160' => 'csa', 'CSS0003447' => 'camsi', 'CSS0017840' => 'camsi', 'CSS0019260' => 'camsi', 'CSS0040375' => 'camsi', 'CSS0042533' => 'camsi', 'DCAR_005960' => 'dca', 'DCAR_012104' => 'dca', 'DCAR_012105' => 'dca', 'DCAR_012293' => 'dca', 'DCAR_015632' => 'dca', 'DCAR_024602' => 'dca', 'DCAR_028752' => 'dca', 'Dinv06261' => 'din', 'Dinv13982' => 'din', 'Dinv17029' => 'din', 'Dinv18463' => 'din', 'Dinv33181' => 'din', 'Dinv35585' => 'din', 'Dinv37161' => 'din', 'Dinv42977' => 'din', 'Dinv43122' => 'din', 'Dinv44517' => 'din', 'Duzib093G0256' => 'dzi', 'Duzib106G1254' => 'dzi', 'Duzib128G1789' => 'dzi', 'Duzib133G0633' => 'dzi', 'Duzib138G0510' => 'dzi', 'Duzib150G1084' => 'dzi', 'Duzib168G0488' => 'dzi', 'Duzib168G1523' => 'dzi', 'Duzib170G0133' => 'dzi', 'ECA234G1433' => 'eca', 'ECA236G1432' => 'eca', 'ECA236G2256' => 'eca', 'ECA236G2365' => 'eca', 'ECA236G4830' => 'eca', 'ECA248G1505' => 'eca', 'EL10Ac3g06431' => 'bvu', 'EL10Ac5g12577' => 'bvu', 'EL10Ac6g13533' => 'bvu', 'EL10Ac7g16045' => 'bvu', 'Eucgr.A01281' => 'egr', 'Eucgr.B02326' => 'egr', 'Eucgr.H03532' => 'egr', 'Eucgr.K00553' => 'egr', 'Eucgr.K03116' => 'egr', 'FAN02G3963' => 'fan', 'FAN05G0438' => 'fan', 'FAN09G2434' => 'fan', 'FAN12G3984' => 'fan', 'FAN14G0798' => 'fan', 'FAN17G0652' => 'fan', 'FAN19G1988' => 'fan', 'FAN22G0632' => 'fan', 'FAN23G0387' => 'fan', 'FAN26G1323' => 'fan', 'FAN28G0666' => 'fan', 'FvH4_1g26080' => 'fve', 'FvH4_3g36780' => 'fve', 'FvH4_4g15270' => 'fve', 'FvH4_6g13490' => 'fve', 'Glyma.01G098700' => 'gma', 'Glyma.03G065900' => 'gma', 'Glyma.03G073754' => 'gma', 'Glyma.03G073758' => 'gma', 'Glyma.03G083200' => 'gma', 'Glyma.03G225500' => 'gma', 'Glyma.05G037766' => 'gma', 'Glyma.07G133500' => 'gma', 'Glyma.10G139400' => 'gma', 'Glyma.10G248900' => 'gma', 'Glyma.11G137800' => 'gma', 'Glyma.12G061300' => 'gma', 'Glyma.13G337900' => 'gma', 'Glyma.15G036600' => 'gma', 'Glyma.18G182800' => 'gma', 'Glyma.19G222500' => 'gma', 'Glyma.20G144800' => 'gma', 'Gohir.A01G222000' => 'ghi', 'Gohir.A03G044000' => 'ghi', 'Gohir.A03G044100' => 'ghi', 'Gohir.A04G083100' => 'ghi', 'Gohir.A07G127200' => 'ghi', 'Gohir.A07G132400' => 'ghi', 'Gohir.A08G000700' => 'ghi', 'Gohir.A11G327300' => 'ghi', 'Gohir.D01G211500' => 'ghi', 'Gohir.D03G123400' => 'ghi', 'Gohir.D03G123500' => 'ghi', 'Gohir.D04G121800' => 'ghi', 'Gohir.D07G131500' => 'ghi', 'Gohir.D07G136600' => 'ghi', 'Gohir.D08G011600' => 'ghi', 'Gohir.D11G346200' => 'ghi', 'Gorai.001G142800' => 'gra', 'Gorai.001G148700' => 'gra', 'Gorai.002G257300' => 'gra', 'Gorai.003G130000' => 'gra', 'Gorai.003G130100' => 'gra', 'Gorai.004G005300' => 'gra', 'Gorai.007G376500' => 'gra', 'Gorai.012G104700' => 'gra', 'GSVIVG01017946001' => 'vvi', 'GSVIVG01024928001' => 'vvi', 'GSVIVG01028227001' => 'vvi', 'GSVIVG01034151001' => 'vvi', 'HanXRQChr05g0135031' => 'han', 'HanXRQChr05g0135041' => 'han', 'HanXRQChr05g0140021' => 'han', 'HanXRQChr06g0178981' => 'han', 'HanXRQChr07g0188251' => 'han', 'HanXRQChr08g0235311' => 'han', 'HanXRQChr09g0271011' => 'han', 'HanXRQChr10g0293321' => 'han', 'HanXRQChr13g0388171' => 'han', 'Haze_00916' => 'cav', 'Haze_05063' => 'cav', 'Haze_20814' => 'cav', 'Haze_24128' => 'cav', 'Hma1.2p1_0745F.1_g212010' => 'hma', 'Hma1.2p1_0757F.1_g213260' => 'hma', 'Hma1.2p1_0936F.1_g238840' => 'hma', 'Hma1.2p1_1735F.1_g299890' => 'hma', 'Hma1.2p1_1861F.1_g305685' => 'hma', 'HPP92_003397' => 'vpl', 'HPP92_012597' => 'vpl', 'HPP92_015520' => 'vpl', 'HPP92_015539' => 'vpl', 'HPP92_020373' => 'vpl', 'Hund04938' => 'sun', 'Hund10677' => 'sun', 'Hund11033' => 'sun', 'Hund12155' => 'sun', 'Lalb_Chr01g0022551' => 'lal', 'Lalb_Chr03g0042341' => 'lal', 'Lalb_Chr07g0192931' => 'lal', 'Lalb_Chr12g0209551' => 'lal', 'Lalb_Chr19g0125251' => 'lal', 'Lalb_Chr19g0137891' => 'lal', 'Lalb_Chr21g0304641' => 'lal', 'Lalb_Chr21g0309881' => 'lal', 'Lj1A5T12' => 'lonja', 'Lj1C148G10' => 'lonja', 'Lj2A93T83' => 'lonja', 'Lj3A738G68' => 'lonja', 'Lj3C966T1' => 'lonja', 'Lj3g0018958' => 'lja', 'Lj3g0021831' => 'lja', 'Lj3g0025443' => 'lja', 'Lj4g0026809' => 'lja', 'Lj5g0012558' => 'lja', 'Lj5g0021586' => 'lja', 'Lsat_1_v5_gn_5_156840' => 'lsa', 'Lsat_1_v5_gn_8_73460' => 'lsa', 'Lsat_1_v5_gn_8_73481' => 'lsa', 'Lsat_1_v5_gn_9_31601' => 'lsa', 'Lsat_1_v5_gn_9_77320' => 'lsa', 'Manes.01G171300' => 'mes', 'Manes.01G171400' => 'mes', 'Manes.01G236100' => 'mes', 'Manes.02G130500' => 'mes', 'Manes.02G130600' => 'mes', 'Manes.03G180200' => 'mes', 'Manes.05G007000' => 'mes', 'Manes.08G084400' => 'mes', 'Manes.09G092600' => 'mes', 'Manes.15G027900' => 'mes', 'MBI04_g40948_MAGBIO' => 'mbi', 'MBI14_g12123_MAGBIO' => 'mbi', 'MBI18_g28915_MAGBIO' => 'mbi', 'MCO09G053' => 'mco', 'MCO11G782' => 'mco', 'MCO15G215' => 'mco', 'MD03G1088500' => 'mdo', 'MD03G1088600' => 'mdo', 'MD04G1130800' => 'mdo', 'MD09G1291700' => 'mdo', 'MD11G1097500' => 'mdo', 'MD11G1097600' => 'mdo', 'MD12G1143900' => 'mdo', 'MD13G1191400' => 'mdo', 'MD16G1191500' => 'mdo', 'Medtr1g085570' => 'mtr', 'Medtr1g104610' => 'mtr', 'Medtr2g097520' => 'mtr', 'Medtr4g021800' => 'mtr', 'Medtr4g021825' => 'mtr', 'Medtr4g064270' => 'mtr', 'Medtr4g064380' => 'mtr', 'Medtr7g062150' => 'mtr', 'MELO3C003138.2' => 'cme', 'MELO3C005187.2' => 'cme', 'MELO3C009252.2' => 'cme', 'MELO3C014481.2' => 'cme', 'MELO3C020616.2' => 'cme', 'MELO3C020617.2' => 'cme', 'MELO3C020618.2' => 'cme', 'Migut.G00328' => 'egut', 'Migut.J00320' => 'egut', 'Migut.L01000' => 'egut', 'Migut.L01953' => 'egut', 'MSTRG.10253' => 'ama', 'MSTRG.19077' => 'ama', 'MSTRG.26780' => 'ama', 'MSTRG.4023' => 'ama', 'MSTRG.5655' => 'ama', 'MSTRG.9992' => 'ama', 'Nitab4.5_0000043g0310' => 'nta', 'Nitab4.5_0000463g0080' => 'nta', 'Nitab4.5_0000705g0170' => 'nta', 'Nitab4.5_0001326g0060' => 'nta', 'Nitab4.5_0001628g0030' => 'nta', 'Nitab4.5_0002103g0110' => 'nta', 'Nitab4.5_0002946g0030' => 'nta', 'Nitab4.5_0004639g0030' => 'nta', 'Nn2g11149' => 'nnu', 'Nn2g13389' => 'nnu', 'Nn4g25326' => 'nnu', 'Nn4g26290' => 'nnu', 'Nn5g29865' => 'nnu', 'Oeu004163.1' => 'oeu', 'Oeu006901.1' => 'oeu', 'Oeu010096.1' => 'oeu', 'Oeu024340.1' => 'oeu', 'Oeu048369.1' => 'oeu', 'Os01g0973000' => 'osa', 'Os03g0273800' => 'osa', 'Os03g0701200' => 'osa', 'Os03g0834050' => 'osa', 'Os07g0634400' => 'osa', 'Peaxi162Scf00092g01414' => 'pax', 'Peaxi162Scf00165g00818' => 'pax', 'Peaxi162Scf00309g00516' => 'pax', 'Peaxi162Scf00774g00218' => 'pax', 'PGR004G1824' => 'pgr', 'PGR004G2606' => 'pgr', 'PGR031G2716' => 'pgr', 'PGR102G2460' => 'pgr', 'PGR142G2599' => 'pgr', 'PGSC0003DMG400000843' => 'stu', 'PGSC0003DMG400008829' => 'stu', 'PGSC0003DMG400030418' => 'stu', 'PGSC0003DMG400031834' => 'stu', 'PGSC0003DMG401028300' => 'stu', 'PGSC0003DMG402028300' => 'stu', 'Phvul.001G219300' => 'pvu', 'Phvul.007G056000' => 'pvu', 'Phvul.007G208000' => 'pvu', 'Phvul.008G119500' => 'pvu', 'Phvul.010G011200' => 'pvu', 'Phvul.010G014800' => 'pvu', 'Phvul.011G062900' => 'pvu', 'Phvul.L007043' => 'pvu', 'Potri.001G242300' => 'ptr', 'Potri.002G185300' => 'ptr', 'Potri.006G086900' => 'ptr', 'Potri.008G151700' => 'ptr', 'Potri.009G033500' => 'ptr', 'Potri.010G089300' => 'ptr', 'Potri.014G110800' => 'ptr', 'Pp3c27_8130' => 'ppa', 'Pp3c6_27410' => 'ppa', 'PRCOL_00001659' => 'pco', 'PRCOL_00001927' => 'pco', 'PRCOL_00003649' => 'pco', 'Prupe.1G011600' => 'ppe', 'Prupe.3G000800' => 'ppe', 'Prupe.3G001100' => 'ppe', 'Prupe.6G072700' => 'ppe', 'Prupe.6G072800' => 'ppe', 'Prupe.6G257300' => 'ppe', 'Prupe.8G033000' => 'ppe', 'Psat0s2633g0080' => 'psa', 'Psat0s3396g0080' => 'psa', 'Psat0s3396g0200' => 'psa', 'Psat3g139080' => 'psa', 'Psat5g285080' => 'psa', 'Psat6g157760' => 'psa', 'Psat6g208440' => 'psa', 'Psat7g215320' => 'psa', 'Psat7g215400' => 'psa', 'Psat7g235600' => 'psa', 'Psat7g235760' => 'psa', 'PSO063G4603' => 'pso', 'PSO210G0182' => 'pso', 'PSO210G0196' => 'pso', 'PSO339G0394' => 'pso', 'PSO339G4127' => 'pso', 'PSO513G0064' => 'pso', 'PSO761G0079' => 'pso', 'QL01p031003' => 'qlo', 'QL01p031078' => 'qlo', 'QL06p003004' => 'qlo', 'QL07p048731' => 'qlo', 'QL09p037427' => 'qlo', 'RcHm_v2.0_Chr3g0466361' => 'rch', 'RcHm_v2.0_Chr3g0485571' => 'rch', 'RcHm_v2.0_Chr4g0416551' => 'rch', 'RcHm_v2.0_Chr5g0065831' => 'rch', 'Rhsim01G0230500' => 'rsi', 'Rhsim05G0194000' => 'rsi', 'Rhsim08G0250400' => 'rsi', 'Sabra02G0131000' => 'sbr', 'Sabra06G0066300' => 'sbr', 'Sabra08G0115500' => 'sbr', 'Sabra09G0023900' => 'sbr', 'Sabra10G0054000' => 'sbr', 'Sabra14G0081500' => 'sbr', 'Sabra16G0147100' => 'sbr', 'SalBow2G2957' => 'sbo', 'SalBow4G3320' => 'sbo', 'SalBow8G1894' => 'sbo', 'Sc07g0007950' => 'sci', 'Sc12g0001360' => 'sci', 'Sc13g0004330' => 'sci', 'Sc20g0005010' => 'sci', 'Sed0000361' => 'sed', 'Sed0001706' => 'sed', 'Sed0002422' => 'sed', 'Sed0004029' => 'sed', 'Sed0004602' => 'sed', 'Sed0004943' => 'sed', 'Sed0008646' => 'sed', 'Sed0023313' => 'sed', 'Sed0024843' => 'sed', 'SEGI_00081' => 'sgi', 'SEGI_00947' => 'sgi', 'SEGI_04046' => 'sgi', 'SEGI_06880' => 'sgi', 'SEGI_09736' => 'sgi', 'SEGI_12741' => 'sgi', 'SEGI_14530' => 'sgi', 'SEGI_20705' => 'sgi', 'SEGI_26088' => 'sgi', 'SEGI_28323' => 'sgi', 'SEGI_33343' => 'sgi', 'SGA_v2.0_scaffold126G33775' => 'sas', 'SGA_v2.0_scaffold2G01337' => 'sas', 'SGA_v2.0_scaffold38G15006' => 'sas', 'SGA_v2.0_scaffold39G15264' => 'sas', 'SGA_v2.0_scaffold453G51880' => 'sas', 'SHI12696' => 'shi', 'SMO367G1096' => 'smo', 'Solyc01g068630.3' => 'sly', 'Solyc05g011880.3' => 'sly', 'Solyc06g076300.3' => 'sly', 'Solyc09g010940.4' => 'sly', 'Solyc09g075890.3' => 'sly', 'Sopen01g030560' => 'spe', 'Sopen05g006630' => 'spe', 'Sopen06g032720' => 'spe', 'Sopen09g005660' => 'spe', 'Sopen09g030690' => 'spe', 'Sp4g14540' => 'spa', 'Sp4g20030' => 'spa', 'Sp5g01320' => 'spa', 'Sp6g21170' => 'spa', 'Sp6g21180' => 'spa', 'Sp6g21190' => 'spa', 'Sp6g40220' => 'spa', 'TAR362G0122' => 'tar', 'TAR362G1338' => 'tar', 'TAR369G0590' => 'tar', 'TAR371G0824' => 'tar', 'TAR622G1429' => 'tar', 'TAR623G0734' => 'tar', 'TAR625G0441' => 'tar', 'TAR629G0976' => 'tar', 'TAR633G1195' => 'tar', 'TAR636G2660' => 'tar', 'THA.LOC104799440' => 'tha', 'THA.LOC104800966' => 'tha', 'THA.LOC104806559' => 'tha', 'THA.LOC104810765' => 'tha', 'THA.LOC104816266' => 'tha', 'THA.LOC104817419' => 'tha', 'THA.LOC104827021' => 'tha', 'Thecc.01G327400' => 'tca', 'Thecc.04G229200' => 'tca', 'Thecc.05G037400' => 'tca', 'Thecc.09G318600' => 'tca', 'Thecc.09G318700' => 'tca', 'Thhalv10006238m.g' => 'esa', 'Thhalv10014321m.g' => 'esa', 'Thhalv10014335m.g' => 'esa', 'Thhalv10015826m.g' => 'esa', 'Thhalv10017107m.g' => 'esa', 'Thhalv10017180m.g' => 'esa', 'Thhalv10029339m.g' => 'esa', 'TPR.G1699' => 'tpr', 'TPR.G23609' => 'tpr', 'TPR.G3081' => 'tpr', 'TPR.G40397' => 'tpr', 'TPR.G5522' => 'tpr', 'TPR.G5618' => 'tpr', 'TPR.G5626' => 'tpr', 'TWI09G1632' => 'twi', 'TWI23G1230' => 'twi', 'TWI53G1064' => 'twi', 'TWI59G0751' => 'twi', 'TWI74G0947' => 'twi', 'TWI77G0337' => 'twi', 'TWI79G1254' => 'twi', 'unitig_0.g2341' => 'ugi', 'unitig_26.g10006' => 'ugi', 'unitig_26.g10008' => 'ugi', 'unitig_26.g9192' => 'ugi', 'vmacro14547' => 'vma', 'vmacro15333' => 'vma', 'vmacro18743' => 'vma', 'vmacro20166' => 'vma', 'VMungo0331G0523' => 'vmu', 'VMungo0331G1202' => 'vmu', 'VMungo0720G1228' => 'vmu', 'VMungo0720G1514' => 'vmu', 'VMungo1080G0169' => 'vmu', 'VMungo1127G1475' => 'vmu', 'VMungo1383G1208' => 'vmu', 'VMungo1383G1698' => 'vmu', 'Zm00001eb012270' => 'zma', 'Zm00001eb054100' => 'zma', 'Zm00001eb063350' => 'zma', 'Zm00001eb328560' => 'zma', 'Zm00001eb342820' => 'zma', 'Zm00001eb362210' => 'zma', 'Zm00001eb397730' => 'zma', 'Zm00001eb399750' => 'zma' ), 'gf_id' => 'HOM05D000959', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000959' ), 'data_identifier' => 'HOM05D000959', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000959', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '622', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p07100' => 'bna', 'A03p11720' => 'bna', 'A05p08300' => 'bna', 'A05p13380' => 'bna', 'A09p54130' => 'bna', 'A10p16690' => 'bna', 'A10p16700' => 'bna', 'A10p33390' => 'bna', 'Aa31LG10G16020' => 'aar', 'Aa31LG1G11810' => 'aar', 'Aa31LG1G11830' => 'aar', 'Aa31LG1G22510' => 'aar', 'Aa31LG5G4890' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5793' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2310' => 'aag', 'Actinidia08499' => 'ach', 'Actinidia11262' => 'ach', 'Actinidia23926' => 'ach', 'Actinidia34420' => 'ach', 'Actinidia36970' => 'ach', 'Ah.02g111220' => 'amhyb', 'Ah.15g097750' => 'amhyb', 'AL4G27500' => 'aly', 'AL6G11470' => 'aly', 'AL8G35950' => 'aly', 'AL8G35960' => 'aly', 'AL8G35970' => 'aly', 'Aqoxy1G00912' => 'aox', 'Aqoxy2G02253' => 'aox', 'Aqoxy2G02411' => 'aox', 'Aqoxy5G00485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BZ66YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K8ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM4FUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6BF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HFV7XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25JBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0YNNV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MAKK6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P70IT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP2Z6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V61LZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YWP64R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3S9AI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7PGHH' => 'arhy', 'AT2G32150' => 'ath', 'AT3G62040' => 'ath', 'AT5G02230' => 'ath', 'AT5G59480' => 'ath', 'AT5G59490' => 'ath', 'ATR0332G060' => 'atr', 'ATR0559G190' => 'atr', 'ATR0693G294' => 'atr', 'Atru.chr3.3975' => 'acertr', 'Atru.chr3.3976' => 'acertr', 'Atru.chr3.3977' => 'acertr', 'Atru.chr4.2498' => 'acertr', 'Atru.chr5.838' => 'acertr', 'Atru.chr8.1990' => 'acertr', 'Atru.chr8.1991' => 'acertr', 'Atru.chr8.1992' => 'acertr', 'AUR62001759' => 'cqu', 'AUR62009545' => 'cqu', 'AUR62010474' => 'cqu', 'AUR62025820' => 'cqu', 'AUR62030422' => 'cqu', 'AUR62033605' => 'cqu', 'AUR62038615' => 'cqu', 'AUR62041347' => 'cqu', 'BcaB01g04574' => 'bca', 'BcaB02g09263' => 'bca', 'BcaB02g10453' => 'bca', 'BcaB05g22513' => 'bca', 'BcaB08g36253' => 'bca', 'BcaB08g36254' => 'bca', 'BcaC01g06519' => 'bca', 'BcaC02g11889' => 'bca', 'BcaC03g14010' => 'bca', 'BcaC03g18439' => 'bca', 'BcaC04g19765' => 'bca', 'BcaC09g48432' => 'bca', 'BcaNung07302' => 'bca', 'BolC2t06040H' => 'bol', 'BolC2t07346H' => 'bol', 'BolC3t13817H' => 'bol', 'BolC4t22625H' => 'bol', 'BolC4t23297H' => 'bol', 'BolC8t51278H' => 'bol', 'BolC9t58050H' => 'bol', 'BolC9t58051H' => 'bol', 'BolC9t60163H' => 'bol', 'BraA02t04712Z' => 'bra', 'BraA02t05791Z' => 'bra', 'BraA03t10483Z' => 'bra', 'BraA05t19795Z' => 'bra', 'BraA05t20276Z' => 'bra', 'BraA09t40827Z' => 'bra', 'BraA10t43750Z' => 'bra', 'BraA10t43751Z' => 'bra', 'BraA10t45370Z' => 'bra', 'C02p00400' => 'bna', 'C02p12460' => 'bna', 'C03p13680' => 'bna', 'C04p10270' => 'bna', 'C04p17500' => 'bna', 'C08p37010' => 'bna', 'C09p51880' => 'bna', 'C09p51890' => 'bna', 'C09p74300' => 'bna', 'CAN.G179.26' => 'can', 'CAN.G3384.1' => 'can', 'CAN.G394.68' => 'can', 'CAN.G907.13' => 'can', 'CANSAT11G0012' => 'cansat', 'CANSAT25G1586' => 'cansat', 'CANSAT35G0735' => 'cansat', 'CANSAT54G0556' => 'cansat', 'CANSAT64G0356' => 'cansat', 'CANSAT78G2042' => 'cansat', 'CARHR125920' => 'chi', 'CARHR131910' => 'chi', 'CARHR172390' => 'chi', 'CARHR211140' => 'chi', 'CARHR285850' => 'chi', 'CARHR285860' => 'chi', 'Carub.0004s1347' => 'cru', 'Carub.0004s1960' => 'cru', 'Carub.0005s2880' => 'cru', 'Carub.0006s0107' => 'cru', 'Carub.0008s2015' => 'cru', 'Carub.0008s2016' => 'cru', 'Carub.0008s2017' => 'cru', 'Ca_01315_v3' => 'car', 'Ca_05063_v3' => 'car', 'Ca_10231_v3' => 'car', 'Ca_10913_v3' => 'car', 'Ca_19156_v3' => 'car', 'Ca_23644_v3' => 'car', 'Ca_26735_v3' => 'car', 'Cc01_g13130' => 'ccan', 'Cc02_g21690' => 'ccan', 'Cc03_g03600' => 'ccan', 'Cc06_g02510' => 'ccan', 'CDE02G1265' => 'cde', 'CDE05G0415' => 'cde', 'CDE08G1082' => 'cde', 'Cfa005780' => 'cfa', 'Cfa011522' => 'cfa', 'Cfa011523' => 'cfa', 'Cfa015627' => 'cfa', 'Cfa017359' => 'cfa', 'Ciclev10005687m.g' => 'ccl', 'Ciclev10012173m.g' => 'ccl', 'Ciclev10021621m.g' => 'ccl', 'Ciclev10028968m.g' => 'ccl', 'Ciclev10029907m.g' => 'ccl', 'CiPaw.01G164800' => 'cil', 'CiPaw.07G083700' => 'cil', 'CiPaw.07G127000' => 'cil', 'CiPaw.07G136900' => 'cil', 'CiPaw.08G081700' => 'cil', 'CiPaw.09G194600' => 'cil', 'CiPaw.10G146500' => 'cil', 'CiPaw.13G091500' => 'cil', 'CiPaw.13G091600' => 'cil', 'ClCG00G003390' => 'cla', 'ClCG01G007220' => 'cla', 'ClCG03G001370' => 'cla', 'ClCG04G008100' => 'cla', 'ClCG06G006110' => 'cla', 'ClCG06G006130' => 'cla', 'ClCG10G021210' => 'cla', 'COL.COLO4_07648' => 'col', 'COL.COLO4_07650' => 'col', 'COL.COLO4_07651' => 'col', 'COL.COLO4_14780' => 'col', 'COL.COLO4_18546' => 'col', 'COL.COLO4_18547' => 'col', 'COL.COLO4_23103' => 'col', 'COL.COLO4_30419' => 'col', 'COL.COLO4_34232' => 'col', 'Cpa.g.sc169.20' => 'cpa', 'Cpa.g.sc57.45' => 'cpa', 'Cpa.g.sc58.124' => 'cpa', 'Cpa.g.sc58.125' => 'cpa', 'Cpa.g.sc81.118' => 'cpa', 'Cpa.g.sc81.119' => 'cpa', 'Cre12.g524700' => 'cre', 'CsaV3_1G034430' => 'csa', 'CsaV3_1G034440' => 'csa', 'CsaV3_1G034450' => 'csa', 'CsaV3_3G034830' => 'csa', 'CsaV3_4G025090' => 'csa', 'CsaV3_5G018660' => 'csa', 'CsaV3_6G038160' => 'csa', 'CSS0003447' => 'camsi', 'CSS0017840' => 'camsi', 'CSS0019260' => 'camsi', 'CSS0040375' => 'camsi', 'CSS0042533' => 'camsi', 'DCAR_005960' => 'dca', 'DCAR_012104' => 'dca', 'DCAR_012105' => 'dca', 'DCAR_012293' => 'dca', 'DCAR_015632' => 'dca', 'DCAR_024602' => 'dca', 'DCAR_028752' => 'dca', 'Dinv06261' => 'din', 'Dinv13982' => 'din', 'Dinv17029' => 'din', 'Dinv18463' => 'din', 'Dinv33181' => 'din', 'Dinv35585' => 'din', 'Dinv37161' => 'din', 'Dinv42977' => 'din', 'Dinv43122' => 'din', 'Dinv44517' => 'din', 'Duzib093G0256' => 'dzi', 'Duzib106G1254' => 'dzi', 'Duzib128G1789' => 'dzi', 'Duzib133G0633' => 'dzi', 'Duzib138G0510' => 'dzi', 'Duzib150G1084' => 'dzi', 'Duzib168G0488' => 'dzi', 'Duzib168G1523' => 'dzi', 'Duzib170G0133' => 'dzi', 'ECA234G1433' => 'eca', 'ECA236G1432' => 'eca', 'ECA236G2256' => 'eca', 'ECA236G2365' => 'eca', 'ECA236G4830' => 'eca', 'ECA248G1505' => 'eca', 'EL10Ac3g06431' => 'bvu', 'EL10Ac5g12577' => 'bvu', 'EL10Ac6g13533' => 'bvu', 'EL10Ac7g16045' => 'bvu', 'Eucgr.A01281' => 'egr', 'Eucgr.B02326' => 'egr', 'Eucgr.H03532' => 'egr', 'Eucgr.K00553' => 'egr', 'Eucgr.K03116' => 'egr', 'FAN02G3963' => 'fan', 'FAN05G0438' => 'fan', 'FAN09G2434' => 'fan', 'FAN12G3984' => 'fan', 'FAN14G0798' => 'fan', 'FAN17G0652' => 'fan', 'FAN19G1988' => 'fan', 'FAN22G0632' => 'fan', 'FAN23G0387' => 'fan', 'FAN26G1323' => 'fan', 'FAN28G0666' => 'fan', 'FvH4_1g26080' => 'fve', 'FvH4_3g36780' => 'fve', 'FvH4_4g15270' => 'fve', 'FvH4_6g13490' => 'fve', 'Glyma.01G098700' => 'gma', 'Glyma.03G065900' => 'gma', 'Glyma.03G073754' => 'gma', 'Glyma.03G073758' => 'gma', 'Glyma.03G083200' => 'gma', 'Glyma.03G225500' => 'gma', 'Glyma.05G037766' => 'gma', 'Glyma.07G133500' => 'gma', 'Glyma.10G139400' => 'gma', 'Glyma.10G248900' => 'gma', 'Glyma.11G137800' => 'gma', 'Glyma.12G061300' => 'gma', 'Glyma.13G337900' => 'gma', 'Glyma.15G036600' => 'gma', 'Glyma.18G182800' => 'gma', 'Glyma.19G222500' => 'gma', 'Glyma.20G144800' => 'gma', 'Gohir.A01G222000' => 'ghi', 'Gohir.A03G044000' => 'ghi', 'Gohir.A03G044100' => 'ghi', 'Gohir.A04G083100' => 'ghi', 'Gohir.A07G127200' => 'ghi', 'Gohir.A07G132400' => 'ghi', 'Gohir.A08G000700' => 'ghi', 'Gohir.A11G327300' => 'ghi', 'Gohir.D01G211500' => 'ghi', 'Gohir.D03G123400' => 'ghi', 'Gohir.D03G123500' => 'ghi', 'Gohir.D04G121800' => 'ghi', 'Gohir.D07G131500' => 'ghi', 'Gohir.D07G136600' => 'ghi', 'Gohir.D08G011600' => 'ghi', 'Gohir.D11G346200' => 'ghi', 'Gorai.001G142800' => 'gra', 'Gorai.001G148700' => 'gra', 'Gorai.002G257300' => 'gra', 'Gorai.003G130000' => 'gra', 'Gorai.003G130100' => 'gra', 'Gorai.004G005300' => 'gra', 'Gorai.007G376500' => 'gra', 'Gorai.012G104700' => 'gra', 'GSVIVG01017946001' => 'vvi', 'GSVIVG01024928001' => 'vvi', 'GSVIVG01028227001' => 'vvi', 'GSVIVG01034151001' => 'vvi', 'HanXRQChr05g0135031' => 'han', 'HanXRQChr05g0135041' => 'han', 'HanXRQChr05g0140021' => 'han', 'HanXRQChr06g0178981' => 'han', 'HanXRQChr07g0188251' => 'han', 'HanXRQChr08g0235311' => 'han', 'HanXRQChr09g0271011' => 'han', 'HanXRQChr10g0293321' => 'han', 'HanXRQChr13g0388171' => 'han', 'Haze_00916' => 'cav', 'Haze_05063' => 'cav', 'Haze_20814' => 'cav', 'Haze_24128' => 'cav', 'Hma1.2p1_0745F.1_g212010' => 'hma', 'Hma1.2p1_0757F.1_g213260' => 'hma', 'Hma1.2p1_0936F.1_g238840' => 'hma', 'Hma1.2p1_1735F.1_g299890' => 'hma', 'Hma1.2p1_1861F.1_g305685' => 'hma', 'HPP92_003397' => 'vpl', 'HPP92_012597' => 'vpl', 'HPP92_015520' => 'vpl', 'HPP92_015539' => 'vpl', 'HPP92_020373' => 'vpl', 'Hund04938' => 'sun', 'Hund10677' => 'sun', 'Hund11033' => 'sun', 'Hund12155' => 'sun', 'Lalb_Chr01g0022551' => 'lal', 'Lalb_Chr03g0042341' => 'lal', 'Lalb_Chr07g0192931' => 'lal', 'Lalb_Chr12g0209551' => 'lal', 'Lalb_Chr19g0125251' => 'lal', 'Lalb_Chr19g0137891' => 'lal', 'Lalb_Chr21g0304641' => 'lal', 'Lalb_Chr21g0309881' => 'lal', 'Lj1A5T12' => 'lonja', 'Lj1C148G10' => 'lonja', 'Lj2A93T83' => 'lonja', 'Lj3A738G68' => 'lonja', 'Lj3C966T1' => 'lonja', 'Lj3g0018958' => 'lja', 'Lj3g0021831' => 'lja', 'Lj3g0025443' => 'lja', 'Lj4g0026809' => 'lja', 'Lj5g0012558' => 'lja', 'Lj5g0021586' => 'lja', 'Lsat_1_v5_gn_5_156840' => 'lsa', 'Lsat_1_v5_gn_8_73460' => 'lsa', 'Lsat_1_v5_gn_8_73481' => 'lsa', 'Lsat_1_v5_gn_9_31601' => 'lsa', 'Lsat_1_v5_gn_9_77320' => 'lsa', 'Manes.01G171300' => 'mes', 'Manes.01G171400' => 'mes', 'Manes.01G236100' => 'mes', 'Manes.02G130500' => 'mes', 'Manes.02G130600' => 'mes', 'Manes.03G180200' => 'mes', 'Manes.05G007000' => 'mes', 'Manes.08G084400' => 'mes', 'Manes.09G092600' => 'mes', 'Manes.15G027900' => 'mes', 'MBI04_g40948_MAGBIO' => 'mbi', 'MBI14_g12123_MAGBIO' => 'mbi', 'MBI18_g28915_MAGBIO' => 'mbi', 'MCO09G053' => 'mco', 'MCO11G782' => 'mco', 'MCO15G215' => 'mco', 'MD03G1088500' => 'mdo', 'MD03G1088600' => 'mdo', 'MD04G1130800' => 'mdo', 'MD09G1291700' => 'mdo', 'MD11G1097500' => 'mdo', 'MD11G1097600' => 'mdo', 'MD12G1143900' => 'mdo', 'MD13G1191400' => 'mdo', 'MD16G1191500' => 'mdo', 'Medtr1g085570' => 'mtr', 'Medtr1g104610' => 'mtr', 'Medtr2g097520' => 'mtr', 'Medtr4g021800' => 'mtr', 'Medtr4g021825' => 'mtr', 'Medtr4g064270' => 'mtr', 'Medtr4g064380' => 'mtr', 'Medtr7g062150' => 'mtr', 'MELO3C003138.2' => 'cme', 'MELO3C005187.2' => 'cme', 'MELO3C009252.2' => 'cme', 'MELO3C014481.2' => 'cme', 'MELO3C020616.2' => 'cme', 'MELO3C020617.2' => 'cme', 'MELO3C020618.2' => 'cme', 'Migut.G00328' => 'egut', 'Migut.J00320' => 'egut', 'Migut.L01000' => 'egut', 'Migut.L01953' => 'egut', 'MSTRG.10253' => 'ama', 'MSTRG.19077' => 'ama', 'MSTRG.26780' => 'ama', 'MSTRG.4023' => 'ama', 'MSTRG.5655' => 'ama', 'MSTRG.9992' => 'ama', 'Nitab4.5_0000043g0310' => 'nta', 'Nitab4.5_0000463g0080' => 'nta', 'Nitab4.5_0000705g0170' => 'nta', 'Nitab4.5_0001326g0060' => 'nta', 'Nitab4.5_0001628g0030' => 'nta', 'Nitab4.5_0002103g0110' => 'nta', 'Nitab4.5_0002946g0030' => 'nta', 'Nitab4.5_0004639g0030' => 'nta', 'Nn2g11149' => 'nnu', 'Nn2g13389' => 'nnu', 'Nn4g25326' => 'nnu', 'Nn4g26290' => 'nnu', 'Nn5g29865' => 'nnu', 'Oeu004163.1' => 'oeu', 'Oeu006901.1' => 'oeu', 'Oeu010096.1' => 'oeu', 'Oeu024340.1' => 'oeu', 'Oeu048369.1' => 'oeu', 'Os01g0973000' => 'osa', 'Os03g0273800' => 'osa', 'Os03g0701200' => 'osa', 'Os03g0834050' => 'osa', 'Os07g0634400' => 'osa', 'Peaxi162Scf00092g01414' => 'pax', 'Peaxi162Scf00165g00818' => 'pax', 'Peaxi162Scf00309g00516' => 'pax', 'Peaxi162Scf00774g00218' => 'pax', 'PGR004G1824' => 'pgr', 'PGR004G2606' => 'pgr', 'PGR031G2716' => 'pgr', 'PGR102G2460' => 'pgr', 'PGR142G2599' => 'pgr', 'PGSC0003DMG400000843' => 'stu', 'PGSC0003DMG400008829' => 'stu', 'PGSC0003DMG400030418' => 'stu', 'PGSC0003DMG400031834' => 'stu', 'PGSC0003DMG401028300' => 'stu', 'PGSC0003DMG402028300' => 'stu', 'Phvul.001G219300' => 'pvu', 'Phvul.007G056000' => 'pvu', 'Phvul.007G208000' => 'pvu', 'Phvul.008G119500' => 'pvu', 'Phvul.010G011200' => 'pvu', 'Phvul.010G014800' => 'pvu', 'Phvul.011G062900' => 'pvu', 'Phvul.L007043' => 'pvu', 'Potri.001G242300' => 'ptr', 'Potri.002G185300' => 'ptr', 'Potri.006G086900' => 'ptr', 'Potri.008G151700' => 'ptr', 'Potri.009G033500' => 'ptr', 'Potri.010G089300' => 'ptr', 'Potri.014G110800' => 'ptr', 'Pp3c27_8130' => 'ppa', 'Pp3c6_27410' => 'ppa', 'PRCOL_00001659' => 'pco', 'PRCOL_00001927' => 'pco', 'PRCOL_00003649' => 'pco', 'Prupe.1G011600' => 'ppe', 'Prupe.3G000800' => 'ppe', 'Prupe.3G001100' => 'ppe', 'Prupe.6G072700' => 'ppe', 'Prupe.6G072800' => 'ppe', 'Prupe.6G257300' => 'ppe', 'Prupe.8G033000' => 'ppe', 'Psat0s2633g0080' => 'psa', 'Psat0s3396g0080' => 'psa', 'Psat0s3396g0200' => 'psa', 'Psat3g139080' => 'psa', 'Psat5g285080' => 'psa', 'Psat6g157760' => 'psa', 'Psat6g208440' => 'psa', 'Psat7g215320' => 'psa', 'Psat7g215400' => 'psa', 'Psat7g235600' => 'psa', 'Psat7g235760' => 'psa', 'PSO063G4603' => 'pso', 'PSO210G0182' => 'pso', 'PSO210G0196' => 'pso', 'PSO339G0394' => 'pso', 'PSO339G4127' => 'pso', 'PSO513G0064' => 'pso', 'PSO761G0079' => 'pso', 'QL01p031003' => 'qlo', 'QL01p031078' => 'qlo', 'QL06p003004' => 'qlo', 'QL07p048731' => 'qlo', 'QL09p037427' => 'qlo', 'RcHm_v2.0_Chr3g0466361' => 'rch', 'RcHm_v2.0_Chr3g0485571' => 'rch', 'RcHm_v2.0_Chr4g0416551' => 'rch', 'RcHm_v2.0_Chr5g0065831' => 'rch', 'Rhsim01G0230500' => 'rsi', 'Rhsim05G0194000' => 'rsi', 'Rhsim08G0250400' => 'rsi', 'Sabra02G0131000' => 'sbr', 'Sabra06G0066300' => 'sbr', 'Sabra08G0115500' => 'sbr', 'Sabra09G0023900' => 'sbr', 'Sabra10G0054000' => 'sbr', 'Sabra14G0081500' => 'sbr', 'Sabra16G0147100' => 'sbr', 'SalBow2G2957' => 'sbo', 'SalBow4G3320' => 'sbo', 'SalBow8G1894' => 'sbo', 'Sc07g0007950' => 'sci', 'Sc12g0001360' => 'sci', 'Sc13g0004330' => 'sci', 'Sc20g0005010' => 'sci', 'Sed0000361' => 'sed', 'Sed0001706' => 'sed', 'Sed0002422' => 'sed', 'Sed0004029' => 'sed', 'Sed0004602' => 'sed', 'Sed0004943' => 'sed', 'Sed0008646' => 'sed', 'Sed0023313' => 'sed', 'Sed0024843' => 'sed', 'SEGI_00081' => 'sgi', 'SEGI_00947' => 'sgi', 'SEGI_04046' => 'sgi', 'SEGI_06880' => 'sgi', 'SEGI_09736' => 'sgi', 'SEGI_12741' => 'sgi', 'SEGI_14530' => 'sgi', 'SEGI_20705' => 'sgi', 'SEGI_26088' => 'sgi', 'SEGI_28323' => 'sgi', 'SEGI_33343' => 'sgi', 'SGA_v2.0_scaffold126G33775' => 'sas', 'SGA_v2.0_scaffold2G01337' => 'sas', 'SGA_v2.0_scaffold38G15006' => 'sas', 'SGA_v2.0_scaffold39G15264' => 'sas', 'SGA_v2.0_scaffold453G51880' => 'sas', 'SHI12696' => 'shi', 'SMO367G1096' => 'smo', 'Solyc01g068630.3' => 'sly', 'Solyc05g011880.3' => 'sly', 'Solyc06g076300.3' => 'sly', 'Solyc09g010940.4' => 'sly', 'Solyc09g075890.3' => 'sly', 'Sopen01g030560' => 'spe', 'Sopen05g006630' => 'spe', 'Sopen06g032720' => 'spe', 'Sopen09g005660' => 'spe', 'Sopen09g030690' => 'spe', 'Sp4g14540' => 'spa', 'Sp4g20030' => 'spa', 'Sp5g01320' => 'spa', 'Sp6g21170' => 'spa', 'Sp6g21180' => 'spa', 'Sp6g21190' => 'spa', 'Sp6g40220' => 'spa', 'TAR362G0122' => 'tar', 'TAR362G1338' => 'tar', 'TAR369G0590' => 'tar', 'TAR371G0824' => 'tar', 'TAR622G1429' => 'tar', 'TAR623G0734' => 'tar', 'TAR625G0441' => 'tar', 'TAR629G0976' => 'tar', 'TAR633G1195' => 'tar', 'TAR636G2660' => 'tar', 'THA.LOC104799440' => 'tha', 'THA.LOC104800966' => 'tha', 'THA.LOC104806559' => 'tha', 'THA.LOC104810765' => 'tha', 'THA.LOC104816266' => 'tha', 'THA.LOC104817419' => 'tha', 'THA.LOC104827021' => 'tha', 'Thecc.01G327400' => 'tca', 'Thecc.04G229200' => 'tca', 'Thecc.05G037400' => 'tca', 'Thecc.09G318600' => 'tca', 'Thecc.09G318700' => 'tca', 'Thhalv10006238m.g' => 'esa', 'Thhalv10014321m.g' => 'esa', 'Thhalv10014335m.g' => 'esa', 'Thhalv10015826m.g' => 'esa', 'Thhalv10017107m.g' => 'esa', 'Thhalv10017180m.g' => 'esa', 'Thhalv10029339m.g' => 'esa', 'TPR.G1699' => 'tpr', 'TPR.G23609' => 'tpr', 'TPR.G3081' => 'tpr', 'TPR.G40397' => 'tpr', 'TPR.G5522' => 'tpr', 'TPR.G5618' => 'tpr', 'TPR.G5626' => 'tpr', 'TWI09G1632' => 'twi', 'TWI23G1230' => 'twi', 'TWI53G1064' => 'twi', 'TWI59G0751' => 'twi', 'TWI74G0947' => 'twi', 'TWI77G0337' => 'twi', 'TWI79G1254' => 'twi', 'unitig_0.g2341' => 'ugi', 'unitig_26.g10006' => 'ugi', 'unitig_26.g10008' => 'ugi', 'unitig_26.g9192' => 'ugi', 'vmacro14547' => 'vma', 'vmacro15333' => 'vma', 'vmacro18743' => 'vma', 'vmacro20166' => 'vma', 'VMungo0331G0523' => 'vmu', 'VMungo0331G1202' => 'vmu', 'VMungo0720G1228' => 'vmu', 'VMungo0720G1514' => 'vmu', 'VMungo1080G0169' => 'vmu', 'VMungo1127G1475' => 'vmu', 'VMungo1383G1208' => 'vmu', 'VMungo1383G1698' => 'vmu', 'Zm00001eb012270' => 'zma', 'Zm00001eb054100' => 'zma', 'Zm00001eb063350' => 'zma', 'Zm00001eb328560' => 'zma', 'Zm00001eb342820' => 'zma', 'Zm00001eb362210' => 'zma', 'Zm00001eb397730' => 'zma', 'Zm00001eb399750' => 'zma' ) $gf_id = 'HOM05D000959' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000959' ) $data_identifier = 'HOM05D000959' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 5, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 5, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 10, 'mbi' => (int) 3, 'mco' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 2, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 3, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 11, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399750' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000959', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '622', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p07100' => 'bna', 'A03p11720' => 'bna', 'A05p08300' => 'bna', 'A05p13380' => 'bna', 'A09p54130' => 'bna', 'A10p16690' => 'bna', 'A10p16700' => 'bna', 'A10p33390' => 'bna', 'Aa31LG10G16020' => 'aar', 'Aa31LG1G11810' => 'aar', 'Aa31LG1G11830' => 'aar', 'Aa31LG1G22510' => 'aar', 'Aa31LG5G4890' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5793' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2310' => 'aag', 'Actinidia08499' => 'ach', 'Actinidia11262' => 'ach', 'Actinidia23926' => 'ach', 'Actinidia34420' => 'ach', 'Actinidia36970' => 'ach', 'Ah.02g111220' => 'amhyb', 'Ah.15g097750' => 'amhyb', 'AL4G27500' => 'aly', 'AL6G11470' => 'aly', 'AL8G35950' => 'aly', 'AL8G35960' => 'aly', 'AL8G35970' => 'aly', 'Aqoxy1G00912' => 'aox', 'Aqoxy2G02253' => 'aox', 'Aqoxy2G02411' => 'aox', 'Aqoxy5G00485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BZ66YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K8ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM4FUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6BF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HFV7XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25JBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0YNNV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MAKK6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P70IT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP2Z6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V61LZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YWP64R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3S9AI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7PGHH' => 'arhy', 'AT2G32150' => 'ath', 'AT3G62040' => 'ath', 'AT5G02230' => 'ath', 'AT5G59480' => 'ath', 'AT5G59490' => 'ath', 'ATR0332G060' => 'atr', 'ATR0559G190' => 'atr', 'ATR0693G294' => 'atr', 'Atru.chr3.3975' => 'acertr', 'Atru.chr3.3976' => 'acertr', 'Atru.chr3.3977' => 'acertr', 'Atru.chr4.2498' => 'acertr', 'Atru.chr5.838' => 'acertr', 'Atru.chr8.1990' => 'acertr', 'Atru.chr8.1991' => 'acertr', 'Atru.chr8.1992' => 'acertr', 'AUR62001759' => 'cqu', 'AUR62009545' => 'cqu', 'AUR62010474' => 'cqu', 'AUR62025820' => 'cqu', 'AUR62030422' => 'cqu', 'AUR62033605' => 'cqu', 'AUR62038615' => 'cqu', 'AUR62041347' => 'cqu', 'BcaB01g04574' => 'bca', 'BcaB02g09263' => 'bca', 'BcaB02g10453' => 'bca', 'BcaB05g22513' => 'bca', 'BcaB08g36253' => 'bca', 'BcaB08g36254' => 'bca', 'BcaC01g06519' => 'bca', 'BcaC02g11889' => 'bca', 'BcaC03g14010' => 'bca', 'BcaC03g18439' => 'bca', 'BcaC04g19765' => 'bca', 'BcaC09g48432' => 'bca', 'BcaNung07302' => 'bca', 'BolC2t06040H' => 'bol', 'BolC2t07346H' => 'bol', 'BolC3t13817H' => 'bol', 'BolC4t22625H' => 'bol', 'BolC4t23297H' => 'bol', 'BolC8t51278H' => 'bol', 'BolC9t58050H' => 'bol', 'BolC9t58051H' => 'bol', 'BolC9t60163H' => 'bol', 'BraA02t04712Z' => 'bra', 'BraA02t05791Z' => 'bra', 'BraA03t10483Z' => 'bra', 'BraA05t19795Z' => 'bra', 'BraA05t20276Z' => 'bra', 'BraA09t40827Z' => 'bra', 'BraA10t43750Z' => 'bra', 'BraA10t43751Z' => 'bra', 'BraA10t45370Z' => 'bra', 'C02p00400' => 'bna', 'C02p12460' => 'bna', 'C03p13680' => 'bna', 'C04p10270' => 'bna', 'C04p17500' => 'bna', 'C08p37010' => 'bna', 'C09p51880' => 'bna', 'C09p51890' => 'bna', 'C09p74300' => 'bna', 'CAN.G179.26' => 'can', 'CAN.G3384.1' => 'can', 'CAN.G394.68' => 'can', 'CAN.G907.13' => 'can', 'CANSAT11G0012' => 'cansat', 'CANSAT25G1586' => 'cansat', 'CANSAT35G0735' => 'cansat', 'CANSAT54G0556' => 'cansat', 'CANSAT64G0356' => 'cansat', 'CANSAT78G2042' => 'cansat', 'CARHR125920' => 'chi', 'CARHR131910' => 'chi', 'CARHR172390' => 'chi', 'CARHR211140' => 'chi', 'CARHR285850' => 'chi', 'CARHR285860' => 'chi', 'Carub.0004s1347' => 'cru', 'Carub.0004s1960' => 'cru', 'Carub.0005s2880' => 'cru', 'Carub.0006s0107' => 'cru', 'Carub.0008s2015' => 'cru', 'Carub.0008s2016' => 'cru', 'Carub.0008s2017' => 'cru', 'Ca_01315_v3' => 'car', 'Ca_05063_v3' => 'car', 'Ca_10231_v3' => 'car', 'Ca_10913_v3' => 'car', 'Ca_19156_v3' => 'car', 'Ca_23644_v3' => 'car', 'Ca_26735_v3' => 'car', 'Cc01_g13130' => 'ccan', 'Cc02_g21690' => 'ccan', 'Cc03_g03600' => 'ccan', 'Cc06_g02510' => 'ccan', 'CDE02G1265' => 'cde', 'CDE05G0415' => 'cde', 'CDE08G1082' => 'cde', 'Cfa005780' => 'cfa', 'Cfa011522' => 'cfa', 'Cfa011523' => 'cfa', 'Cfa015627' => 'cfa', 'Cfa017359' => 'cfa', 'Ciclev10005687m.g' => 'ccl', 'Ciclev10012173m.g' => 'ccl', 'Ciclev10021621m.g' => 'ccl', 'Ciclev10028968m.g' => 'ccl', 'Ciclev10029907m.g' => 'ccl', 'CiPaw.01G164800' => 'cil', 'CiPaw.07G083700' => 'cil', 'CiPaw.07G127000' => 'cil', 'CiPaw.07G136900' => 'cil', 'CiPaw.08G081700' => 'cil', 'CiPaw.09G194600' => 'cil', 'CiPaw.10G146500' => 'cil', 'CiPaw.13G091500' => 'cil', 'CiPaw.13G091600' => 'cil', 'ClCG00G003390' => 'cla', 'ClCG01G007220' => 'cla', 'ClCG03G001370' => 'cla', 'ClCG04G008100' => 'cla', 'ClCG06G006110' => 'cla', 'ClCG06G006130' => 'cla', 'ClCG10G021210' => 'cla', 'COL.COLO4_07648' => 'col', 'COL.COLO4_07650' => 'col', 'COL.COLO4_07651' => 'col', 'COL.COLO4_14780' => 'col', 'COL.COLO4_18546' => 'col', 'COL.COLO4_18547' => 'col', 'COL.COLO4_23103' => 'col', 'COL.COLO4_30419' => 'col', 'COL.COLO4_34232' => 'col', 'Cpa.g.sc169.20' => 'cpa', 'Cpa.g.sc57.45' => 'cpa', 'Cpa.g.sc58.124' => 'cpa', 'Cpa.g.sc58.125' => 'cpa', 'Cpa.g.sc81.118' => 'cpa', 'Cpa.g.sc81.119' => 'cpa', 'Cre12.g524700' => 'cre', 'CsaV3_1G034430' => 'csa', 'CsaV3_1G034440' => 'csa', 'CsaV3_1G034450' => 'csa', 'CsaV3_3G034830' => 'csa', 'CsaV3_4G025090' => 'csa', 'CsaV3_5G018660' => 'csa', 'CsaV3_6G038160' => 'csa', 'CSS0003447' => 'camsi', 'CSS0017840' => 'camsi', 'CSS0019260' => 'camsi', 'CSS0040375' => 'camsi', 'CSS0042533' => 'camsi', 'DCAR_005960' => 'dca', 'DCAR_012104' => 'dca', 'DCAR_012105' => 'dca', 'DCAR_012293' => 'dca', 'DCAR_015632' => 'dca', 'DCAR_024602' => 'dca', 'DCAR_028752' => 'dca', 'Dinv06261' => 'din', 'Dinv13982' => 'din', 'Dinv17029' => 'din', 'Dinv18463' => 'din', 'Dinv33181' => 'din', 'Dinv35585' => 'din', 'Dinv37161' => 'din', 'Dinv42977' => 'din', 'Dinv43122' => 'din', 'Dinv44517' => 'din', 'Duzib093G0256' => 'dzi', 'Duzib106G1254' => 'dzi', 'Duzib128G1789' => 'dzi', 'Duzib133G0633' => 'dzi', 'Duzib138G0510' => 'dzi', 'Duzib150G1084' => 'dzi', 'Duzib168G0488' => 'dzi', 'Duzib168G1523' => 'dzi', 'Duzib170G0133' => 'dzi', 'ECA234G1433' => 'eca', 'ECA236G1432' => 'eca', 'ECA236G2256' => 'eca', 'ECA236G2365' => 'eca', 'ECA236G4830' => 'eca', 'ECA248G1505' => 'eca', 'EL10Ac3g06431' => 'bvu', 'EL10Ac5g12577' => 'bvu', 'EL10Ac6g13533' => 'bvu', 'EL10Ac7g16045' => 'bvu', 'Eucgr.A01281' => 'egr', 'Eucgr.B02326' => 'egr', 'Eucgr.H03532' => 'egr', 'Eucgr.K00553' => 'egr', 'Eucgr.K03116' => 'egr', 'FAN02G3963' => 'fan', 'FAN05G0438' => 'fan', 'FAN09G2434' => 'fan', 'FAN12G3984' => 'fan', 'FAN14G0798' => 'fan', 'FAN17G0652' => 'fan', 'FAN19G1988' => 'fan', 'FAN22G0632' => 'fan', 'FAN23G0387' => 'fan', 'FAN26G1323' => 'fan', 'FAN28G0666' => 'fan', 'FvH4_1g26080' => 'fve', 'FvH4_3g36780' => 'fve', 'FvH4_4g15270' => 'fve', 'FvH4_6g13490' => 'fve', 'Glyma.01G098700' => 'gma', 'Glyma.03G065900' => 'gma', 'Glyma.03G073754' => 'gma', 'Glyma.03G073758' => 'gma', 'Glyma.03G083200' => 'gma', 'Glyma.03G225500' => 'gma', 'Glyma.05G037766' => 'gma', 'Glyma.07G133500' => 'gma', 'Glyma.10G139400' => 'gma', 'Glyma.10G248900' => 'gma', 'Glyma.11G137800' => 'gma', 'Glyma.12G061300' => 'gma', 'Glyma.13G337900' => 'gma', 'Glyma.15G036600' => 'gma', 'Glyma.18G182800' => 'gma', 'Glyma.19G222500' => 'gma', 'Glyma.20G144800' => 'gma', 'Gohir.A01G222000' => 'ghi', 'Gohir.A03G044000' => 'ghi', 'Gohir.A03G044100' => 'ghi', 'Gohir.A04G083100' => 'ghi', 'Gohir.A07G127200' => 'ghi', 'Gohir.A07G132400' => 'ghi', 'Gohir.A08G000700' => 'ghi', 'Gohir.A11G327300' => 'ghi', 'Gohir.D01G211500' => 'ghi', 'Gohir.D03G123400' => 'ghi', 'Gohir.D03G123500' => 'ghi', 'Gohir.D04G121800' => 'ghi', 'Gohir.D07G131500' => 'ghi', 'Gohir.D07G136600' => 'ghi', 'Gohir.D08G011600' => 'ghi', 'Gohir.D11G346200' => 'ghi', 'Gorai.001G142800' => 'gra', 'Gorai.001G148700' => 'gra', 'Gorai.002G257300' => 'gra', 'Gorai.003G130000' => 'gra', 'Gorai.003G130100' => 'gra', 'Gorai.004G005300' => 'gra', 'Gorai.007G376500' => 'gra', 'Gorai.012G104700' => 'gra', 'GSVIVG01017946001' => 'vvi', 'GSVIVG01024928001' => 'vvi', 'GSVIVG01028227001' => 'vvi', 'GSVIVG01034151001' => 'vvi', 'HanXRQChr05g0135031' => 'han', 'HanXRQChr05g0135041' => 'han', 'HanXRQChr05g0140021' => 'han', 'HanXRQChr06g0178981' => 'han', 'HanXRQChr07g0188251' => 'han', 'HanXRQChr08g0235311' => 'han', 'HanXRQChr09g0271011' => 'han', 'HanXRQChr10g0293321' => 'han', 'HanXRQChr13g0388171' => 'han', 'Haze_00916' => 'cav', 'Haze_05063' => 'cav', 'Haze_20814' => 'cav', 'Haze_24128' => 'cav', 'Hma1.2p1_0745F.1_g212010' => 'hma', 'Hma1.2p1_0757F.1_g213260' => 'hma', 'Hma1.2p1_0936F.1_g238840' => 'hma', 'Hma1.2p1_1735F.1_g299890' => 'hma', 'Hma1.2p1_1861F.1_g305685' => 'hma', 'HPP92_003397' => 'vpl', 'HPP92_012597' => 'vpl', 'HPP92_015520' => 'vpl', 'HPP92_015539' => 'vpl', 'HPP92_020373' => 'vpl', 'Hund04938' => 'sun', 'Hund10677' => 'sun', 'Hund11033' => 'sun', 'Hund12155' => 'sun', 'Lalb_Chr01g0022551' => 'lal', 'Lalb_Chr03g0042341' => 'lal', 'Lalb_Chr07g0192931' => 'lal', 'Lalb_Chr12g0209551' => 'lal', 'Lalb_Chr19g0125251' => 'lal', 'Lalb_Chr19g0137891' => 'lal', 'Lalb_Chr21g0304641' => 'lal', 'Lalb_Chr21g0309881' => 'lal', 'Lj1A5T12' => 'lonja', 'Lj1C148G10' => 'lonja', 'Lj2A93T83' => 'lonja', 'Lj3A738G68' => 'lonja', 'Lj3C966T1' => 'lonja', 'Lj3g0018958' => 'lja', 'Lj3g0021831' => 'lja', 'Lj3g0025443' => 'lja', 'Lj4g0026809' => 'lja', 'Lj5g0012558' => 'lja', 'Lj5g0021586' => 'lja', 'Lsat_1_v5_gn_5_156840' => 'lsa', 'Lsat_1_v5_gn_8_73460' => 'lsa', 'Lsat_1_v5_gn_8_73481' => 'lsa', 'Lsat_1_v5_gn_9_31601' => 'lsa', 'Lsat_1_v5_gn_9_77320' => 'lsa', 'Manes.01G171300' => 'mes', 'Manes.01G171400' => 'mes', 'Manes.01G236100' => 'mes', 'Manes.02G130500' => 'mes', 'Manes.02G130600' => 'mes', 'Manes.03G180200' => 'mes', 'Manes.05G007000' => 'mes', 'Manes.08G084400' => 'mes', 'Manes.09G092600' => 'mes', 'Manes.15G027900' => 'mes', 'MBI04_g40948_MAGBIO' => 'mbi', 'MBI14_g12123_MAGBIO' => 'mbi', 'MBI18_g28915_MAGBIO' => 'mbi', 'MCO09G053' => 'mco', 'MCO11G782' => 'mco', 'MCO15G215' => 'mco', 'MD03G1088500' => 'mdo', 'MD03G1088600' => 'mdo', 'MD04G1130800' => 'mdo', 'MD09G1291700' => 'mdo', 'MD11G1097500' => 'mdo', 'MD11G1097600' => 'mdo', 'MD12G1143900' => 'mdo', 'MD13G1191400' => 'mdo', 'MD16G1191500' => 'mdo', 'Medtr1g085570' => 'mtr', 'Medtr1g104610' => 'mtr', 'Medtr2g097520' => 'mtr', 'Medtr4g021800' => 'mtr', 'Medtr4g021825' => 'mtr', 'Medtr4g064270' => 'mtr', 'Medtr4g064380' => 'mtr', 'Medtr7g062150' => 'mtr', 'MELO3C003138.2' => 'cme', 'MELO3C005187.2' => 'cme', 'MELO3C009252.2' => 'cme', 'MELO3C014481.2' => 'cme', 'MELO3C020616.2' => 'cme', 'MELO3C020617.2' => 'cme', 'MELO3C020618.2' => 'cme', 'Migut.G00328' => 'egut', 'Migut.J00320' => 'egut', 'Migut.L01000' => 'egut', 'Migut.L01953' => 'egut', 'MSTRG.10253' => 'ama', 'MSTRG.19077' => 'ama', 'MSTRG.26780' => 'ama', 'MSTRG.4023' => 'ama', 'MSTRG.5655' => 'ama', 'MSTRG.9992' => 'ama', 'Nitab4.5_0000043g0310' => 'nta', 'Nitab4.5_0000463g0080' => 'nta', 'Nitab4.5_0000705g0170' => 'nta', 'Nitab4.5_0001326g0060' => 'nta', 'Nitab4.5_0001628g0030' => 'nta', 'Nitab4.5_0002103g0110' => 'nta', 'Nitab4.5_0002946g0030' => 'nta', 'Nitab4.5_0004639g0030' => 'nta', 'Nn2g11149' => 'nnu', 'Nn2g13389' => 'nnu', 'Nn4g25326' => 'nnu', 'Nn4g26290' => 'nnu', 'Nn5g29865' => 'nnu', 'Oeu004163.1' => 'oeu', 'Oeu006901.1' => 'oeu', 'Oeu010096.1' => 'oeu', 'Oeu024340.1' => 'oeu', 'Oeu048369.1' => 'oeu', 'Os01g0973000' => 'osa', 'Os03g0273800' => 'osa', 'Os03g0701200' => 'osa', 'Os03g0834050' => 'osa', 'Os07g0634400' => 'osa', 'Peaxi162Scf00092g01414' => 'pax', 'Peaxi162Scf00165g00818' => 'pax', 'Peaxi162Scf00309g00516' => 'pax', 'Peaxi162Scf00774g00218' => 'pax', 'PGR004G1824' => 'pgr', 'PGR004G2606' => 'pgr', 'PGR031G2716' => 'pgr', 'PGR102G2460' => 'pgr', 'PGR142G2599' => 'pgr', 'PGSC0003DMG400000843' => 'stu', 'PGSC0003DMG400008829' => 'stu', 'PGSC0003DMG400030418' => 'stu', 'PGSC0003DMG400031834' => 'stu', 'PGSC0003DMG401028300' => 'stu', 'PGSC0003DMG402028300' => 'stu', 'Phvul.001G219300' => 'pvu', 'Phvul.007G056000' => 'pvu', 'Phvul.007G208000' => 'pvu', 'Phvul.008G119500' => 'pvu', 'Phvul.010G011200' => 'pvu', 'Phvul.010G014800' => 'pvu', 'Phvul.011G062900' => 'pvu', 'Phvul.L007043' => 'pvu', 'Potri.001G242300' => 'ptr', 'Potri.002G185300' => 'ptr', 'Potri.006G086900' => 'ptr', 'Potri.008G151700' => 'ptr', 'Potri.009G033500' => 'ptr', 'Potri.010G089300' => 'ptr', 'Potri.014G110800' => 'ptr', 'Pp3c27_8130' => 'ppa', 'Pp3c6_27410' => 'ppa', 'PRCOL_00001659' => 'pco', 'PRCOL_00001927' => 'pco', 'PRCOL_00003649' => 'pco', 'Prupe.1G011600' => 'ppe', 'Prupe.3G000800' => 'ppe', 'Prupe.3G001100' => 'ppe', 'Prupe.6G072700' => 'ppe', 'Prupe.6G072800' => 'ppe', 'Prupe.6G257300' => 'ppe', 'Prupe.8G033000' => 'ppe', 'Psat0s2633g0080' => 'psa', 'Psat0s3396g0080' => 'psa', 'Psat0s3396g0200' => 'psa', 'Psat3g139080' => 'psa', 'Psat5g285080' => 'psa', 'Psat6g157760' => 'psa', 'Psat6g208440' => 'psa', 'Psat7g215320' => 'psa', 'Psat7g215400' => 'psa', 'Psat7g235600' => 'psa', 'Psat7g235760' => 'psa', 'PSO063G4603' => 'pso', 'PSO210G0182' => 'pso', 'PSO210G0196' => 'pso', 'PSO339G0394' => 'pso', 'PSO339G4127' => 'pso', 'PSO513G0064' => 'pso', 'PSO761G0079' => 'pso', 'QL01p031003' => 'qlo', 'QL01p031078' => 'qlo', 'QL06p003004' => 'qlo', 'QL07p048731' => 'qlo', 'QL09p037427' => 'qlo', 'RcHm_v2.0_Chr3g0466361' => 'rch', 'RcHm_v2.0_Chr3g0485571' => 'rch', 'RcHm_v2.0_Chr4g0416551' => 'rch', 'RcHm_v2.0_Chr5g0065831' => 'rch', 'Rhsim01G0230500' => 'rsi', 'Rhsim05G0194000' => 'rsi', 'Rhsim08G0250400' => 'rsi', 'Sabra02G0131000' => 'sbr', 'Sabra06G0066300' => 'sbr', 'Sabra08G0115500' => 'sbr', 'Sabra09G0023900' => 'sbr', 'Sabra10G0054000' => 'sbr', 'Sabra14G0081500' => 'sbr', 'Sabra16G0147100' => 'sbr', 'SalBow2G2957' => 'sbo', 'SalBow4G3320' => 'sbo', 'SalBow8G1894' => 'sbo', 'Sc07g0007950' => 'sci', 'Sc12g0001360' => 'sci', 'Sc13g0004330' => 'sci', 'Sc20g0005010' => 'sci', 'Sed0000361' => 'sed', 'Sed0001706' => 'sed', 'Sed0002422' => 'sed', 'Sed0004029' => 'sed', 'Sed0004602' => 'sed', 'Sed0004943' => 'sed', 'Sed0008646' => 'sed', 'Sed0023313' => 'sed', 'Sed0024843' => 'sed', 'SEGI_00081' => 'sgi', 'SEGI_00947' => 'sgi', 'SEGI_04046' => 'sgi', 'SEGI_06880' => 'sgi', 'SEGI_09736' => 'sgi', 'SEGI_12741' => 'sgi', 'SEGI_14530' => 'sgi', 'SEGI_20705' => 'sgi', 'SEGI_26088' => 'sgi', 'SEGI_28323' => 'sgi', 'SEGI_33343' => 'sgi', 'SGA_v2.0_scaffold126G33775' => 'sas', 'SGA_v2.0_scaffold2G01337' => 'sas', 'SGA_v2.0_scaffold38G15006' => 'sas', 'SGA_v2.0_scaffold39G15264' => 'sas', 'SGA_v2.0_scaffold453G51880' => 'sas', 'SHI12696' => 'shi', 'SMO367G1096' => 'smo', 'Solyc01g068630.3' => 'sly', 'Solyc05g011880.3' => 'sly', 'Solyc06g076300.3' => 'sly', 'Solyc09g010940.4' => 'sly', 'Solyc09g075890.3' => 'sly', 'Sopen01g030560' => 'spe', 'Sopen05g006630' => 'spe', 'Sopen06g032720' => 'spe', 'Sopen09g005660' => 'spe', 'Sopen09g030690' => 'spe', 'Sp4g14540' => 'spa', 'Sp4g20030' => 'spa', 'Sp5g01320' => 'spa', 'Sp6g21170' => 'spa', 'Sp6g21180' => 'spa', 'Sp6g21190' => 'spa', 'Sp6g40220' => 'spa', 'TAR362G0122' => 'tar', 'TAR362G1338' => 'tar', 'TAR369G0590' => 'tar', 'TAR371G0824' => 'tar', 'TAR622G1429' => 'tar', 'TAR623G0734' => 'tar', 'TAR625G0441' => 'tar', 'TAR629G0976' => 'tar', 'TAR633G1195' => 'tar', 'TAR636G2660' => 'tar', 'THA.LOC104799440' => 'tha', 'THA.LOC104800966' => 'tha', 'THA.LOC104806559' => 'tha', 'THA.LOC104810765' => 'tha', 'THA.LOC104816266' => 'tha', 'THA.LOC104817419' => 'tha', 'THA.LOC104827021' => 'tha', 'Thecc.01G327400' => 'tca', 'Thecc.04G229200' => 'tca', 'Thecc.05G037400' => 'tca', 'Thecc.09G318600' => 'tca', 'Thecc.09G318700' => 'tca', 'Thhalv10006238m.g' => 'esa', 'Thhalv10014321m.g' => 'esa', 'Thhalv10014335m.g' => 'esa', 'Thhalv10015826m.g' => 'esa', 'Thhalv10017107m.g' => 'esa', 'Thhalv10017180m.g' => 'esa', 'Thhalv10029339m.g' => 'esa', 'TPR.G1699' => 'tpr', 'TPR.G23609' => 'tpr', 'TPR.G3081' => 'tpr', 'TPR.G40397' => 'tpr', 'TPR.G5522' => 'tpr', 'TPR.G5618' => 'tpr', 'TPR.G5626' => 'tpr', 'TWI09G1632' => 'twi', 'TWI23G1230' => 'twi', 'TWI53G1064' => 'twi', 'TWI59G0751' => 'twi', 'TWI74G0947' => 'twi', 'TWI77G0337' => 'twi', 'TWI79G1254' => 'twi', 'unitig_0.g2341' => 'ugi', 'unitig_26.g10006' => 'ugi', 'unitig_26.g10008' => 'ugi', 'unitig_26.g9192' => 'ugi', 'vmacro14547' => 'vma', 'vmacro15333' => 'vma', 'vmacro18743' => 'vma', 'vmacro20166' => 'vma', 'VMungo0331G0523' => 'vmu', 'VMungo0331G1202' => 'vmu', 'VMungo0720G1228' => 'vmu', 'VMungo0720G1514' => 'vmu', 'VMungo1080G0169' => 'vmu', 'VMungo1127G1475' => 'vmu', 'VMungo1383G1208' => 'vmu', 'VMungo1383G1698' => 'vmu', 'Zm00001eb012270' => 'zma', 'Zm00001eb054100' => 'zma', 'Zm00001eb063350' => 'zma', 'Zm00001eb328560' => 'zma', 'Zm00001eb342820' => 'zma', 'Zm00001eb362210' => 'zma', 'Zm00001eb397730' => 'zma', 'Zm00001eb399750' => 'zma' ), 'gf_id' => 'HOM05D000959', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000959' ), 'data_identifier' => 'HOM05D000959', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000959', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '622', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p07100' => 'bna', 'A03p11720' => 'bna', 'A05p08300' => 'bna', 'A05p13380' => 'bna', 'A09p54130' => 'bna', 'A10p16690' => 'bna', 'A10p16700' => 'bna', 'A10p33390' => 'bna', 'Aa31LG10G16020' => 'aar', 'Aa31LG1G11810' => 'aar', 'Aa31LG1G11830' => 'aar', 'Aa31LG1G22510' => 'aar', 'Aa31LG5G4890' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5793' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2310' => 'aag', 'Actinidia08499' => 'ach', 'Actinidia11262' => 'ach', 'Actinidia23926' => 'ach', 'Actinidia34420' => 'ach', 'Actinidia36970' => 'ach', 'Ah.02g111220' => 'amhyb', 'Ah.15g097750' => 'amhyb', 'AL4G27500' => 'aly', 'AL6G11470' => 'aly', 'AL8G35950' => 'aly', 'AL8G35960' => 'aly', 'AL8G35970' => 'aly', 'Aqoxy1G00912' => 'aox', 'Aqoxy2G02253' => 'aox', 'Aqoxy2G02411' => 'aox', 'Aqoxy5G00485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BZ66YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K8ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM4FUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6BF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HFV7XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25JBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0YNNV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MAKK6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P70IT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP2Z6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V61LZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YWP64R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3S9AI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7PGHH' => 'arhy', 'AT2G32150' => 'ath', 'AT3G62040' => 'ath', 'AT5G02230' => 'ath', 'AT5G59480' => 'ath', 'AT5G59490' => 'ath', 'ATR0332G060' => 'atr', 'ATR0559G190' => 'atr', 'ATR0693G294' => 'atr', 'Atru.chr3.3975' => 'acertr', 'Atru.chr3.3976' => 'acertr', 'Atru.chr3.3977' => 'acertr', 'Atru.chr4.2498' => 'acertr', 'Atru.chr5.838' => 'acertr', 'Atru.chr8.1990' => 'acertr', 'Atru.chr8.1991' => 'acertr', 'Atru.chr8.1992' => 'acertr', 'AUR62001759' => 'cqu', 'AUR62009545' => 'cqu', 'AUR62010474' => 'cqu', 'AUR62025820' => 'cqu', 'AUR62030422' => 'cqu', 'AUR62033605' => 'cqu', 'AUR62038615' => 'cqu', 'AUR62041347' => 'cqu', 'BcaB01g04574' => 'bca', 'BcaB02g09263' => 'bca', 'BcaB02g10453' => 'bca', 'BcaB05g22513' => 'bca', 'BcaB08g36253' => 'bca', 'BcaB08g36254' => 'bca', 'BcaC01g06519' => 'bca', 'BcaC02g11889' => 'bca', 'BcaC03g14010' => 'bca', 'BcaC03g18439' => 'bca', 'BcaC04g19765' => 'bca', 'BcaC09g48432' => 'bca', 'BcaNung07302' => 'bca', 'BolC2t06040H' => 'bol', 'BolC2t07346H' => 'bol', 'BolC3t13817H' => 'bol', 'BolC4t22625H' => 'bol', 'BolC4t23297H' => 'bol', 'BolC8t51278H' => 'bol', 'BolC9t58050H' => 'bol', 'BolC9t58051H' => 'bol', 'BolC9t60163H' => 'bol', 'BraA02t04712Z' => 'bra', 'BraA02t05791Z' => 'bra', 'BraA03t10483Z' => 'bra', 'BraA05t19795Z' => 'bra', 'BraA05t20276Z' => 'bra', 'BraA09t40827Z' => 'bra', 'BraA10t43750Z' => 'bra', 'BraA10t43751Z' => 'bra', 'BraA10t45370Z' => 'bra', 'C02p00400' => 'bna', 'C02p12460' => 'bna', 'C03p13680' => 'bna', 'C04p10270' => 'bna', 'C04p17500' => 'bna', 'C08p37010' => 'bna', 'C09p51880' => 'bna', 'C09p51890' => 'bna', 'C09p74300' => 'bna', 'CAN.G179.26' => 'can', 'CAN.G3384.1' => 'can', 'CAN.G394.68' => 'can', 'CAN.G907.13' => 'can', 'CANSAT11G0012' => 'cansat', 'CANSAT25G1586' => 'cansat', 'CANSAT35G0735' => 'cansat', 'CANSAT54G0556' => 'cansat', 'CANSAT64G0356' => 'cansat', 'CANSAT78G2042' => 'cansat', 'CARHR125920' => 'chi', 'CARHR131910' => 'chi', 'CARHR172390' => 'chi', 'CARHR211140' => 'chi', 'CARHR285850' => 'chi', 'CARHR285860' => 'chi', 'Carub.0004s1347' => 'cru', 'Carub.0004s1960' => 'cru', 'Carub.0005s2880' => 'cru', 'Carub.0006s0107' => 'cru', 'Carub.0008s2015' => 'cru', 'Carub.0008s2016' => 'cru', 'Carub.0008s2017' => 'cru', 'Ca_01315_v3' => 'car', 'Ca_05063_v3' => 'car', 'Ca_10231_v3' => 'car', 'Ca_10913_v3' => 'car', 'Ca_19156_v3' => 'car', 'Ca_23644_v3' => 'car', 'Ca_26735_v3' => 'car', 'Cc01_g13130' => 'ccan', 'Cc02_g21690' => 'ccan', 'Cc03_g03600' => 'ccan', 'Cc06_g02510' => 'ccan', 'CDE02G1265' => 'cde', 'CDE05G0415' => 'cde', 'CDE08G1082' => 'cde', 'Cfa005780' => 'cfa', 'Cfa011522' => 'cfa', 'Cfa011523' => 'cfa', 'Cfa015627' => 'cfa', 'Cfa017359' => 'cfa', 'Ciclev10005687m.g' => 'ccl', 'Ciclev10012173m.g' => 'ccl', 'Ciclev10021621m.g' => 'ccl', 'Ciclev10028968m.g' => 'ccl', 'Ciclev10029907m.g' => 'ccl', 'CiPaw.01G164800' => 'cil', 'CiPaw.07G083700' => 'cil', 'CiPaw.07G127000' => 'cil', 'CiPaw.07G136900' => 'cil', 'CiPaw.08G081700' => 'cil', 'CiPaw.09G194600' => 'cil', 'CiPaw.10G146500' => 'cil', 'CiPaw.13G091500' => 'cil', 'CiPaw.13G091600' => 'cil', 'ClCG00G003390' => 'cla', 'ClCG01G007220' => 'cla', 'ClCG03G001370' => 'cla', 'ClCG04G008100' => 'cla', 'ClCG06G006110' => 'cla', 'ClCG06G006130' => 'cla', 'ClCG10G021210' => 'cla', 'COL.COLO4_07648' => 'col', 'COL.COLO4_07650' => 'col', 'COL.COLO4_07651' => 'col', 'COL.COLO4_14780' => 'col', 'COL.COLO4_18546' => 'col', 'COL.COLO4_18547' => 'col', 'COL.COLO4_23103' => 'col', 'COL.COLO4_30419' => 'col', 'COL.COLO4_34232' => 'col', 'Cpa.g.sc169.20' => 'cpa', 'Cpa.g.sc57.45' => 'cpa', 'Cpa.g.sc58.124' => 'cpa', 'Cpa.g.sc58.125' => 'cpa', 'Cpa.g.sc81.118' => 'cpa', 'Cpa.g.sc81.119' => 'cpa', 'Cre12.g524700' => 'cre', 'CsaV3_1G034430' => 'csa', 'CsaV3_1G034440' => 'csa', 'CsaV3_1G034450' => 'csa', 'CsaV3_3G034830' => 'csa', 'CsaV3_4G025090' => 'csa', 'CsaV3_5G018660' => 'csa', 'CsaV3_6G038160' => 'csa', 'CSS0003447' => 'camsi', 'CSS0017840' => 'camsi', 'CSS0019260' => 'camsi', 'CSS0040375' => 'camsi', 'CSS0042533' => 'camsi', 'DCAR_005960' => 'dca', 'DCAR_012104' => 'dca', 'DCAR_012105' => 'dca', 'DCAR_012293' => 'dca', 'DCAR_015632' => 'dca', 'DCAR_024602' => 'dca', 'DCAR_028752' => 'dca', 'Dinv06261' => 'din', 'Dinv13982' => 'din', 'Dinv17029' => 'din', 'Dinv18463' => 'din', 'Dinv33181' => 'din', 'Dinv35585' => 'din', 'Dinv37161' => 'din', 'Dinv42977' => 'din', 'Dinv43122' => 'din', 'Dinv44517' => 'din', 'Duzib093G0256' => 'dzi', 'Duzib106G1254' => 'dzi', 'Duzib128G1789' => 'dzi', 'Duzib133G0633' => 'dzi', 'Duzib138G0510' => 'dzi', 'Duzib150G1084' => 'dzi', 'Duzib168G0488' => 'dzi', 'Duzib168G1523' => 'dzi', 'Duzib170G0133' => 'dzi', 'ECA234G1433' => 'eca', 'ECA236G1432' => 'eca', 'ECA236G2256' => 'eca', 'ECA236G2365' => 'eca', 'ECA236G4830' => 'eca', 'ECA248G1505' => 'eca', 'EL10Ac3g06431' => 'bvu', 'EL10Ac5g12577' => 'bvu', 'EL10Ac6g13533' => 'bvu', 'EL10Ac7g16045' => 'bvu', 'Eucgr.A01281' => 'egr', 'Eucgr.B02326' => 'egr', 'Eucgr.H03532' => 'egr', 'Eucgr.K00553' => 'egr', 'Eucgr.K03116' => 'egr', 'FAN02G3963' => 'fan', 'FAN05G0438' => 'fan', 'FAN09G2434' => 'fan', 'FAN12G3984' => 'fan', 'FAN14G0798' => 'fan', 'FAN17G0652' => 'fan', 'FAN19G1988' => 'fan', 'FAN22G0632' => 'fan', 'FAN23G0387' => 'fan', 'FAN26G1323' => 'fan', 'FAN28G0666' => 'fan', 'FvH4_1g26080' => 'fve', 'FvH4_3g36780' => 'fve', 'FvH4_4g15270' => 'fve', 'FvH4_6g13490' => 'fve', 'Glyma.01G098700' => 'gma', 'Glyma.03G065900' => 'gma', 'Glyma.03G073754' => 'gma', 'Glyma.03G073758' => 'gma', 'Glyma.03G083200' => 'gma', 'Glyma.03G225500' => 'gma', 'Glyma.05G037766' => 'gma', 'Glyma.07G133500' => 'gma', 'Glyma.10G139400' => 'gma', 'Glyma.10G248900' => 'gma', 'Glyma.11G137800' => 'gma', 'Glyma.12G061300' => 'gma', 'Glyma.13G337900' => 'gma', 'Glyma.15G036600' => 'gma', 'Glyma.18G182800' => 'gma', 'Glyma.19G222500' => 'gma', 'Glyma.20G144800' => 'gma', 'Gohir.A01G222000' => 'ghi', 'Gohir.A03G044000' => 'ghi', 'Gohir.A03G044100' => 'ghi', 'Gohir.A04G083100' => 'ghi', 'Gohir.A07G127200' => 'ghi', 'Gohir.A07G132400' => 'ghi', 'Gohir.A08G000700' => 'ghi', 'Gohir.A11G327300' => 'ghi', 'Gohir.D01G211500' => 'ghi', 'Gohir.D03G123400' => 'ghi', 'Gohir.D03G123500' => 'ghi', 'Gohir.D04G121800' => 'ghi', 'Gohir.D07G131500' => 'ghi', 'Gohir.D07G136600' => 'ghi', 'Gohir.D08G011600' => 'ghi', 'Gohir.D11G346200' => 'ghi', 'Gorai.001G142800' => 'gra', 'Gorai.001G148700' => 'gra', 'Gorai.002G257300' => 'gra', 'Gorai.003G130000' => 'gra', 'Gorai.003G130100' => 'gra', 'Gorai.004G005300' => 'gra', 'Gorai.007G376500' => 'gra', 'Gorai.012G104700' => 'gra', 'GSVIVG01017946001' => 'vvi', 'GSVIVG01024928001' => 'vvi', 'GSVIVG01028227001' => 'vvi', 'GSVIVG01034151001' => 'vvi', 'HanXRQChr05g0135031' => 'han', 'HanXRQChr05g0135041' => 'han', 'HanXRQChr05g0140021' => 'han', 'HanXRQChr06g0178981' => 'han', 'HanXRQChr07g0188251' => 'han', 'HanXRQChr08g0235311' => 'han', 'HanXRQChr09g0271011' => 'han', 'HanXRQChr10g0293321' => 'han', 'HanXRQChr13g0388171' => 'han', 'Haze_00916' => 'cav', 'Haze_05063' => 'cav', 'Haze_20814' => 'cav', 'Haze_24128' => 'cav', 'Hma1.2p1_0745F.1_g212010' => 'hma', 'Hma1.2p1_0757F.1_g213260' => 'hma', 'Hma1.2p1_0936F.1_g238840' => 'hma', 'Hma1.2p1_1735F.1_g299890' => 'hma', 'Hma1.2p1_1861F.1_g305685' => 'hma', 'HPP92_003397' => 'vpl', 'HPP92_012597' => 'vpl', 'HPP92_015520' => 'vpl', 'HPP92_015539' => 'vpl', 'HPP92_020373' => 'vpl', 'Hund04938' => 'sun', 'Hund10677' => 'sun', 'Hund11033' => 'sun', 'Hund12155' => 'sun', 'Lalb_Chr01g0022551' => 'lal', 'Lalb_Chr03g0042341' => 'lal', 'Lalb_Chr07g0192931' => 'lal', 'Lalb_Chr12g0209551' => 'lal', 'Lalb_Chr19g0125251' => 'lal', 'Lalb_Chr19g0137891' => 'lal', 'Lalb_Chr21g0304641' => 'lal', 'Lalb_Chr21g0309881' => 'lal', 'Lj1A5T12' => 'lonja', 'Lj1C148G10' => 'lonja', 'Lj2A93T83' => 'lonja', 'Lj3A738G68' => 'lonja', 'Lj3C966T1' => 'lonja', 'Lj3g0018958' => 'lja', 'Lj3g0021831' => 'lja', 'Lj3g0025443' => 'lja', 'Lj4g0026809' => 'lja', 'Lj5g0012558' => 'lja', 'Lj5g0021586' => 'lja', 'Lsat_1_v5_gn_5_156840' => 'lsa', 'Lsat_1_v5_gn_8_73460' => 'lsa', 'Lsat_1_v5_gn_8_73481' => 'lsa', 'Lsat_1_v5_gn_9_31601' => 'lsa', 'Lsat_1_v5_gn_9_77320' => 'lsa', 'Manes.01G171300' => 'mes', 'Manes.01G171400' => 'mes', 'Manes.01G236100' => 'mes', 'Manes.02G130500' => 'mes', 'Manes.02G130600' => 'mes', 'Manes.03G180200' => 'mes', 'Manes.05G007000' => 'mes', 'Manes.08G084400' => 'mes', 'Manes.09G092600' => 'mes', 'Manes.15G027900' => 'mes', 'MBI04_g40948_MAGBIO' => 'mbi', 'MBI14_g12123_MAGBIO' => 'mbi', 'MBI18_g28915_MAGBIO' => 'mbi', 'MCO09G053' => 'mco', 'MCO11G782' => 'mco', 'MCO15G215' => 'mco', 'MD03G1088500' => 'mdo', 'MD03G1088600' => 'mdo', 'MD04G1130800' => 'mdo', 'MD09G1291700' => 'mdo', 'MD11G1097500' => 'mdo', 'MD11G1097600' => 'mdo', 'MD12G1143900' => 'mdo', 'MD13G1191400' => 'mdo', 'MD16G1191500' => 'mdo', 'Medtr1g085570' => 'mtr', 'Medtr1g104610' => 'mtr', 'Medtr2g097520' => 'mtr', 'Medtr4g021800' => 'mtr', 'Medtr4g021825' => 'mtr', 'Medtr4g064270' => 'mtr', 'Medtr4g064380' => 'mtr', 'Medtr7g062150' => 'mtr', 'MELO3C003138.2' => 'cme', 'MELO3C005187.2' => 'cme', 'MELO3C009252.2' => 'cme', 'MELO3C014481.2' => 'cme', 'MELO3C020616.2' => 'cme', 'MELO3C020617.2' => 'cme', 'MELO3C020618.2' => 'cme', 'Migut.G00328' => 'egut', 'Migut.J00320' => 'egut', 'Migut.L01000' => 'egut', 'Migut.L01953' => 'egut', 'MSTRG.10253' => 'ama', 'MSTRG.19077' => 'ama', 'MSTRG.26780' => 'ama', 'MSTRG.4023' => 'ama', 'MSTRG.5655' => 'ama', 'MSTRG.9992' => 'ama', 'Nitab4.5_0000043g0310' => 'nta', 'Nitab4.5_0000463g0080' => 'nta', 'Nitab4.5_0000705g0170' => 'nta', 'Nitab4.5_0001326g0060' => 'nta', 'Nitab4.5_0001628g0030' => 'nta', 'Nitab4.5_0002103g0110' => 'nta', 'Nitab4.5_0002946g0030' => 'nta', 'Nitab4.5_0004639g0030' => 'nta', 'Nn2g11149' => 'nnu', 'Nn2g13389' => 'nnu', 'Nn4g25326' => 'nnu', 'Nn4g26290' => 'nnu', 'Nn5g29865' => 'nnu', 'Oeu004163.1' => 'oeu', 'Oeu006901.1' => 'oeu', 'Oeu010096.1' => 'oeu', 'Oeu024340.1' => 'oeu', 'Oeu048369.1' => 'oeu', 'Os01g0973000' => 'osa', 'Os03g0273800' => 'osa', 'Os03g0701200' => 'osa', 'Os03g0834050' => 'osa', 'Os07g0634400' => 'osa', 'Peaxi162Scf00092g01414' => 'pax', 'Peaxi162Scf00165g00818' => 'pax', 'Peaxi162Scf00309g00516' => 'pax', 'Peaxi162Scf00774g00218' => 'pax', 'PGR004G1824' => 'pgr', 'PGR004G2606' => 'pgr', 'PGR031G2716' => 'pgr', 'PGR102G2460' => 'pgr', 'PGR142G2599' => 'pgr', 'PGSC0003DMG400000843' => 'stu', 'PGSC0003DMG400008829' => 'stu', 'PGSC0003DMG400030418' => 'stu', 'PGSC0003DMG400031834' => 'stu', 'PGSC0003DMG401028300' => 'stu', 'PGSC0003DMG402028300' => 'stu', 'Phvul.001G219300' => 'pvu', 'Phvul.007G056000' => 'pvu', 'Phvul.007G208000' => 'pvu', 'Phvul.008G119500' => 'pvu', 'Phvul.010G011200' => 'pvu', 'Phvul.010G014800' => 'pvu', 'Phvul.011G062900' => 'pvu', 'Phvul.L007043' => 'pvu', 'Potri.001G242300' => 'ptr', 'Potri.002G185300' => 'ptr', 'Potri.006G086900' => 'ptr', 'Potri.008G151700' => 'ptr', 'Potri.009G033500' => 'ptr', 'Potri.010G089300' => 'ptr', 'Potri.014G110800' => 'ptr', 'Pp3c27_8130' => 'ppa', 'Pp3c6_27410' => 'ppa', 'PRCOL_00001659' => 'pco', 'PRCOL_00001927' => 'pco', 'PRCOL_00003649' => 'pco', 'Prupe.1G011600' => 'ppe', 'Prupe.3G000800' => 'ppe', 'Prupe.3G001100' => 'ppe', 'Prupe.6G072700' => 'ppe', 'Prupe.6G072800' => 'ppe', 'Prupe.6G257300' => 'ppe', 'Prupe.8G033000' => 'ppe', 'Psat0s2633g0080' => 'psa', 'Psat0s3396g0080' => 'psa', 'Psat0s3396g0200' => 'psa', 'Psat3g139080' => 'psa', 'Psat5g285080' => 'psa', 'Psat6g157760' => 'psa', 'Psat6g208440' => 'psa', 'Psat7g215320' => 'psa', 'Psat7g215400' => 'psa', 'Psat7g235600' => 'psa', 'Psat7g235760' => 'psa', 'PSO063G4603' => 'pso', 'PSO210G0182' => 'pso', 'PSO210G0196' => 'pso', 'PSO339G0394' => 'pso', 'PSO339G4127' => 'pso', 'PSO513G0064' => 'pso', 'PSO761G0079' => 'pso', 'QL01p031003' => 'qlo', 'QL01p031078' => 'qlo', 'QL06p003004' => 'qlo', 'QL07p048731' => 'qlo', 'QL09p037427' => 'qlo', 'RcHm_v2.0_Chr3g0466361' => 'rch', 'RcHm_v2.0_Chr3g0485571' => 'rch', 'RcHm_v2.0_Chr4g0416551' => 'rch', 'RcHm_v2.0_Chr5g0065831' => 'rch', 'Rhsim01G0230500' => 'rsi', 'Rhsim05G0194000' => 'rsi', 'Rhsim08G0250400' => 'rsi', 'Sabra02G0131000' => 'sbr', 'Sabra06G0066300' => 'sbr', 'Sabra08G0115500' => 'sbr', 'Sabra09G0023900' => 'sbr', 'Sabra10G0054000' => 'sbr', 'Sabra14G0081500' => 'sbr', 'Sabra16G0147100' => 'sbr', 'SalBow2G2957' => 'sbo', 'SalBow4G3320' => 'sbo', 'SalBow8G1894' => 'sbo', 'Sc07g0007950' => 'sci', 'Sc12g0001360' => 'sci', 'Sc13g0004330' => 'sci', 'Sc20g0005010' => 'sci', 'Sed0000361' => 'sed', 'Sed0001706' => 'sed', 'Sed0002422' => 'sed', 'Sed0004029' => 'sed', 'Sed0004602' => 'sed', 'Sed0004943' => 'sed', 'Sed0008646' => 'sed', 'Sed0023313' => 'sed', 'Sed0024843' => 'sed', 'SEGI_00081' => 'sgi', 'SEGI_00947' => 'sgi', 'SEGI_04046' => 'sgi', 'SEGI_06880' => 'sgi', 'SEGI_09736' => 'sgi', 'SEGI_12741' => 'sgi', 'SEGI_14530' => 'sgi', 'SEGI_20705' => 'sgi', 'SEGI_26088' => 'sgi', 'SEGI_28323' => 'sgi', 'SEGI_33343' => 'sgi', 'SGA_v2.0_scaffold126G33775' => 'sas', 'SGA_v2.0_scaffold2G01337' => 'sas', 'SGA_v2.0_scaffold38G15006' => 'sas', 'SGA_v2.0_scaffold39G15264' => 'sas', 'SGA_v2.0_scaffold453G51880' => 'sas', 'SHI12696' => 'shi', 'SMO367G1096' => 'smo', 'Solyc01g068630.3' => 'sly', 'Solyc05g011880.3' => 'sly', 'Solyc06g076300.3' => 'sly', 'Solyc09g010940.4' => 'sly', 'Solyc09g075890.3' => 'sly', 'Sopen01g030560' => 'spe', 'Sopen05g006630' => 'spe', 'Sopen06g032720' => 'spe', 'Sopen09g005660' => 'spe', 'Sopen09g030690' => 'spe', 'Sp4g14540' => 'spa', 'Sp4g20030' => 'spa', 'Sp5g01320' => 'spa', 'Sp6g21170' => 'spa', 'Sp6g21180' => 'spa', 'Sp6g21190' => 'spa', 'Sp6g40220' => 'spa', 'TAR362G0122' => 'tar', 'TAR362G1338' => 'tar', 'TAR369G0590' => 'tar', 'TAR371G0824' => 'tar', 'TAR622G1429' => 'tar', 'TAR623G0734' => 'tar', 'TAR625G0441' => 'tar', 'TAR629G0976' => 'tar', 'TAR633G1195' => 'tar', 'TAR636G2660' => 'tar', 'THA.LOC104799440' => 'tha', 'THA.LOC104800966' => 'tha', 'THA.LOC104806559' => 'tha', 'THA.LOC104810765' => 'tha', 'THA.LOC104816266' => 'tha', 'THA.LOC104817419' => 'tha', 'THA.LOC104827021' => 'tha', 'Thecc.01G327400' => 'tca', 'Thecc.04G229200' => 'tca', 'Thecc.05G037400' => 'tca', 'Thecc.09G318600' => 'tca', 'Thecc.09G318700' => 'tca', 'Thhalv10006238m.g' => 'esa', 'Thhalv10014321m.g' => 'esa', 'Thhalv10014335m.g' => 'esa', 'Thhalv10015826m.g' => 'esa', 'Thhalv10017107m.g' => 'esa', 'Thhalv10017180m.g' => 'esa', 'Thhalv10029339m.g' => 'esa', 'TPR.G1699' => 'tpr', 'TPR.G23609' => 'tpr', 'TPR.G3081' => 'tpr', 'TPR.G40397' => 'tpr', 'TPR.G5522' => 'tpr', 'TPR.G5618' => 'tpr', 'TPR.G5626' => 'tpr', 'TWI09G1632' => 'twi', 'TWI23G1230' => 'twi', 'TWI53G1064' => 'twi', 'TWI59G0751' => 'twi', 'TWI74G0947' => 'twi', 'TWI77G0337' => 'twi', 'TWI79G1254' => 'twi', 'unitig_0.g2341' => 'ugi', 'unitig_26.g10006' => 'ugi', 'unitig_26.g10008' => 'ugi', 'unitig_26.g9192' => 'ugi', 'vmacro14547' => 'vma', 'vmacro15333' => 'vma', 'vmacro18743' => 'vma', 'vmacro20166' => 'vma', 'VMungo0331G0523' => 'vmu', 'VMungo0331G1202' => 'vmu', 'VMungo0720G1228' => 'vmu', 'VMungo0720G1514' => 'vmu', 'VMungo1080G0169' => 'vmu', 'VMungo1127G1475' => 'vmu', 'VMungo1383G1208' => 'vmu', 'VMungo1383G1698' => 'vmu', 'Zm00001eb012270' => 'zma', 'Zm00001eb054100' => 'zma', 'Zm00001eb063350' => 'zma', 'Zm00001eb328560' => 'zma', 'Zm00001eb342820' => 'zma', 'Zm00001eb362210' => 'zma', 'Zm00001eb397730' => 'zma', 'Zm00001eb399750' => 'zma' ) $gf_id = 'HOM05D000959' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000959' ) $data_identifier = 'HOM05D000959' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 5, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 5, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 10, 'mbi' => (int) 3, 'mco' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 2, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 3, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 11, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399750' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000959', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '622', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p07100' => 'bna', 'A03p11720' => 'bna', 'A05p08300' => 'bna', 'A05p13380' => 'bna', 'A09p54130' => 'bna', 'A10p16690' => 'bna', 'A10p16700' => 'bna', 'A10p33390' => 'bna', 'Aa31LG10G16020' => 'aar', 'Aa31LG1G11810' => 'aar', 'Aa31LG1G11830' => 'aar', 'Aa31LG1G22510' => 'aar', 'Aa31LG5G4890' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5793' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2310' => 'aag', 'Actinidia08499' => 'ach', 'Actinidia11262' => 'ach', 'Actinidia23926' => 'ach', 'Actinidia34420' => 'ach', 'Actinidia36970' => 'ach', 'Ah.02g111220' => 'amhyb', 'Ah.15g097750' => 'amhyb', 'AL4G27500' => 'aly', 'AL6G11470' => 'aly', 'AL8G35950' => 'aly', 'AL8G35960' => 'aly', 'AL8G35970' => 'aly', 'Aqoxy1G00912' => 'aox', 'Aqoxy2G02253' => 'aox', 'Aqoxy2G02411' => 'aox', 'Aqoxy5G00485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BZ66YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K8ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM4FUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6BF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HFV7XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25JBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0YNNV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MAKK6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P70IT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP2Z6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V61LZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YWP64R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3S9AI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7PGHH' => 'arhy', 'AT2G32150' => 'ath', 'AT3G62040' => 'ath', 'AT5G02230' => 'ath', 'AT5G59480' => 'ath', 'AT5G59490' => 'ath', 'ATR0332G060' => 'atr', 'ATR0559G190' => 'atr', 'ATR0693G294' => 'atr', 'Atru.chr3.3975' => 'acertr', 'Atru.chr3.3976' => 'acertr', 'Atru.chr3.3977' => 'acertr', 'Atru.chr4.2498' => 'acertr', 'Atru.chr5.838' => 'acertr', 'Atru.chr8.1990' => 'acertr', 'Atru.chr8.1991' => 'acertr', 'Atru.chr8.1992' => 'acertr', 'AUR62001759' => 'cqu', 'AUR62009545' => 'cqu', 'AUR62010474' => 'cqu', 'AUR62025820' => 'cqu', 'AUR62030422' => 'cqu', 'AUR62033605' => 'cqu', 'AUR62038615' => 'cqu', 'AUR62041347' => 'cqu', 'BcaB01g04574' => 'bca', 'BcaB02g09263' => 'bca', 'BcaB02g10453' => 'bca', 'BcaB05g22513' => 'bca', 'BcaB08g36253' => 'bca', 'BcaB08g36254' => 'bca', 'BcaC01g06519' => 'bca', 'BcaC02g11889' => 'bca', 'BcaC03g14010' => 'bca', 'BcaC03g18439' => 'bca', 'BcaC04g19765' => 'bca', 'BcaC09g48432' => 'bca', 'BcaNung07302' => 'bca', 'BolC2t06040H' => 'bol', 'BolC2t07346H' => 'bol', 'BolC3t13817H' => 'bol', 'BolC4t22625H' => 'bol', 'BolC4t23297H' => 'bol', 'BolC8t51278H' => 'bol', 'BolC9t58050H' => 'bol', 'BolC9t58051H' => 'bol', 'BolC9t60163H' => 'bol', 'BraA02t04712Z' => 'bra', 'BraA02t05791Z' => 'bra', 'BraA03t10483Z' => 'bra', 'BraA05t19795Z' => 'bra', 'BraA05t20276Z' => 'bra', 'BraA09t40827Z' => 'bra', 'BraA10t43750Z' => 'bra', 'BraA10t43751Z' => 'bra', 'BraA10t45370Z' => 'bra', 'C02p00400' => 'bna', 'C02p12460' => 'bna', 'C03p13680' => 'bna', 'C04p10270' => 'bna', 'C04p17500' => 'bna', 'C08p37010' => 'bna', 'C09p51880' => 'bna', 'C09p51890' => 'bna', 'C09p74300' => 'bna', 'CAN.G179.26' => 'can', 'CAN.G3384.1' => 'can', 'CAN.G394.68' => 'can', 'CAN.G907.13' => 'can', 'CANSAT11G0012' => 'cansat', 'CANSAT25G1586' => 'cansat', 'CANSAT35G0735' => 'cansat', 'CANSAT54G0556' => 'cansat', 'CANSAT64G0356' => 'cansat', 'CANSAT78G2042' => 'cansat', 'CARHR125920' => 'chi', 'CARHR131910' => 'chi', 'CARHR172390' => 'chi', 'CARHR211140' => 'chi', 'CARHR285850' => 'chi', 'CARHR285860' => 'chi', 'Carub.0004s1347' => 'cru', 'Carub.0004s1960' => 'cru', 'Carub.0005s2880' => 'cru', 'Carub.0006s0107' => 'cru', 'Carub.0008s2015' => 'cru', 'Carub.0008s2016' => 'cru', 'Carub.0008s2017' => 'cru', 'Ca_01315_v3' => 'car', 'Ca_05063_v3' => 'car', 'Ca_10231_v3' => 'car', 'Ca_10913_v3' => 'car', 'Ca_19156_v3' => 'car', 'Ca_23644_v3' => 'car', 'Ca_26735_v3' => 'car', 'Cc01_g13130' => 'ccan', 'Cc02_g21690' => 'ccan', 'Cc03_g03600' => 'ccan', 'Cc06_g02510' => 'ccan', 'CDE02G1265' => 'cde', 'CDE05G0415' => 'cde', 'CDE08G1082' => 'cde', 'Cfa005780' => 'cfa', 'Cfa011522' => 'cfa', 'Cfa011523' => 'cfa', 'Cfa015627' => 'cfa', 'Cfa017359' => 'cfa', 'Ciclev10005687m.g' => 'ccl', 'Ciclev10012173m.g' => 'ccl', 'Ciclev10021621m.g' => 'ccl', 'Ciclev10028968m.g' => 'ccl', 'Ciclev10029907m.g' => 'ccl', 'CiPaw.01G164800' => 'cil', 'CiPaw.07G083700' => 'cil', 'CiPaw.07G127000' => 'cil', 'CiPaw.07G136900' => 'cil', 'CiPaw.08G081700' => 'cil', 'CiPaw.09G194600' => 'cil', 'CiPaw.10G146500' => 'cil', 'CiPaw.13G091500' => 'cil', 'CiPaw.13G091600' => 'cil', 'ClCG00G003390' => 'cla', 'ClCG01G007220' => 'cla', 'ClCG03G001370' => 'cla', 'ClCG04G008100' => 'cla', 'ClCG06G006110' => 'cla', 'ClCG06G006130' => 'cla', 'ClCG10G021210' => 'cla', 'COL.COLO4_07648' => 'col', 'COL.COLO4_07650' => 'col', 'COL.COLO4_07651' => 'col', 'COL.COLO4_14780' => 'col', 'COL.COLO4_18546' => 'col', 'COL.COLO4_18547' => 'col', 'COL.COLO4_23103' => 'col', 'COL.COLO4_30419' => 'col', 'COL.COLO4_34232' => 'col', 'Cpa.g.sc169.20' => 'cpa', 'Cpa.g.sc57.45' => 'cpa', 'Cpa.g.sc58.124' => 'cpa', 'Cpa.g.sc58.125' => 'cpa', 'Cpa.g.sc81.118' => 'cpa', 'Cpa.g.sc81.119' => 'cpa', 'Cre12.g524700' => 'cre', 'CsaV3_1G034430' => 'csa', 'CsaV3_1G034440' => 'csa', 'CsaV3_1G034450' => 'csa', 'CsaV3_3G034830' => 'csa', 'CsaV3_4G025090' => 'csa', 'CsaV3_5G018660' => 'csa', 'CsaV3_6G038160' => 'csa', 'CSS0003447' => 'camsi', 'CSS0017840' => 'camsi', 'CSS0019260' => 'camsi', 'CSS0040375' => 'camsi', 'CSS0042533' => 'camsi', 'DCAR_005960' => 'dca', 'DCAR_012104' => 'dca', 'DCAR_012105' => 'dca', 'DCAR_012293' => 'dca', 'DCAR_015632' => 'dca', 'DCAR_024602' => 'dca', 'DCAR_028752' => 'dca', 'Dinv06261' => 'din', 'Dinv13982' => 'din', 'Dinv17029' => 'din', 'Dinv18463' => 'din', 'Dinv33181' => 'din', 'Dinv35585' => 'din', 'Dinv37161' => 'din', 'Dinv42977' => 'din', 'Dinv43122' => 'din', 'Dinv44517' => 'din', 'Duzib093G0256' => 'dzi', 'Duzib106G1254' => 'dzi', 'Duzib128G1789' => 'dzi', 'Duzib133G0633' => 'dzi', 'Duzib138G0510' => 'dzi', 'Duzib150G1084' => 'dzi', 'Duzib168G0488' => 'dzi', 'Duzib168G1523' => 'dzi', 'Duzib170G0133' => 'dzi', 'ECA234G1433' => 'eca', 'ECA236G1432' => 'eca', 'ECA236G2256' => 'eca', 'ECA236G2365' => 'eca', 'ECA236G4830' => 'eca', 'ECA248G1505' => 'eca', 'EL10Ac3g06431' => 'bvu', 'EL10Ac5g12577' => 'bvu', 'EL10Ac6g13533' => 'bvu', 'EL10Ac7g16045' => 'bvu', 'Eucgr.A01281' => 'egr', 'Eucgr.B02326' => 'egr', 'Eucgr.H03532' => 'egr', 'Eucgr.K00553' => 'egr', 'Eucgr.K03116' => 'egr', 'FAN02G3963' => 'fan', 'FAN05G0438' => 'fan', 'FAN09G2434' => 'fan', 'FAN12G3984' => 'fan', 'FAN14G0798' => 'fan', 'FAN17G0652' => 'fan', 'FAN19G1988' => 'fan', 'FAN22G0632' => 'fan', 'FAN23G0387' => 'fan', 'FAN26G1323' => 'fan', 'FAN28G0666' => 'fan', 'FvH4_1g26080' => 'fve', 'FvH4_3g36780' => 'fve', 'FvH4_4g15270' => 'fve', 'FvH4_6g13490' => 'fve', 'Glyma.01G098700' => 'gma', 'Glyma.03G065900' => 'gma', 'Glyma.03G073754' => 'gma', 'Glyma.03G073758' => 'gma', 'Glyma.03G083200' => 'gma', 'Glyma.03G225500' => 'gma', 'Glyma.05G037766' => 'gma', 'Glyma.07G133500' => 'gma', 'Glyma.10G139400' => 'gma', 'Glyma.10G248900' => 'gma', 'Glyma.11G137800' => 'gma', 'Glyma.12G061300' => 'gma', 'Glyma.13G337900' => 'gma', 'Glyma.15G036600' => 'gma', 'Glyma.18G182800' => 'gma', 'Glyma.19G222500' => 'gma', 'Glyma.20G144800' => 'gma', 'Gohir.A01G222000' => 'ghi', 'Gohir.A03G044000' => 'ghi', 'Gohir.A03G044100' => 'ghi', 'Gohir.A04G083100' => 'ghi', 'Gohir.A07G127200' => 'ghi', 'Gohir.A07G132400' => 'ghi', 'Gohir.A08G000700' => 'ghi', 'Gohir.A11G327300' => 'ghi', 'Gohir.D01G211500' => 'ghi', 'Gohir.D03G123400' => 'ghi', 'Gohir.D03G123500' => 'ghi', 'Gohir.D04G121800' => 'ghi', 'Gohir.D07G131500' => 'ghi', 'Gohir.D07G136600' => 'ghi', 'Gohir.D08G011600' => 'ghi', 'Gohir.D11G346200' => 'ghi', 'Gorai.001G142800' => 'gra', 'Gorai.001G148700' => 'gra', 'Gorai.002G257300' => 'gra', 'Gorai.003G130000' => 'gra', 'Gorai.003G130100' => 'gra', 'Gorai.004G005300' => 'gra', 'Gorai.007G376500' => 'gra', 'Gorai.012G104700' => 'gra', 'GSVIVG01017946001' => 'vvi', 'GSVIVG01024928001' => 'vvi', 'GSVIVG01028227001' => 'vvi', 'GSVIVG01034151001' => 'vvi', 'HanXRQChr05g0135031' => 'han', 'HanXRQChr05g0135041' => 'han', 'HanXRQChr05g0140021' => 'han', 'HanXRQChr06g0178981' => 'han', 'HanXRQChr07g0188251' => 'han', 'HanXRQChr08g0235311' => 'han', 'HanXRQChr09g0271011' => 'han', 'HanXRQChr10g0293321' => 'han', 'HanXRQChr13g0388171' => 'han', 'Haze_00916' => 'cav', 'Haze_05063' => 'cav', 'Haze_20814' => 'cav', 'Haze_24128' => 'cav', 'Hma1.2p1_0745F.1_g212010' => 'hma', 'Hma1.2p1_0757F.1_g213260' => 'hma', 'Hma1.2p1_0936F.1_g238840' => 'hma', 'Hma1.2p1_1735F.1_g299890' => 'hma', 'Hma1.2p1_1861F.1_g305685' => 'hma', 'HPP92_003397' => 'vpl', 'HPP92_012597' => 'vpl', 'HPP92_015520' => 'vpl', 'HPP92_015539' => 'vpl', 'HPP92_020373' => 'vpl', 'Hund04938' => 'sun', 'Hund10677' => 'sun', 'Hund11033' => 'sun', 'Hund12155' => 'sun', 'Lalb_Chr01g0022551' => 'lal', 'Lalb_Chr03g0042341' => 'lal', 'Lalb_Chr07g0192931' => 'lal', 'Lalb_Chr12g0209551' => 'lal', 'Lalb_Chr19g0125251' => 'lal', 'Lalb_Chr19g0137891' => 'lal', 'Lalb_Chr21g0304641' => 'lal', 'Lalb_Chr21g0309881' => 'lal', 'Lj1A5T12' => 'lonja', 'Lj1C148G10' => 'lonja', 'Lj2A93T83' => 'lonja', 'Lj3A738G68' => 'lonja', 'Lj3C966T1' => 'lonja', 'Lj3g0018958' => 'lja', 'Lj3g0021831' => 'lja', 'Lj3g0025443' => 'lja', 'Lj4g0026809' => 'lja', 'Lj5g0012558' => 'lja', 'Lj5g0021586' => 'lja', 'Lsat_1_v5_gn_5_156840' => 'lsa', 'Lsat_1_v5_gn_8_73460' => 'lsa', 'Lsat_1_v5_gn_8_73481' => 'lsa', 'Lsat_1_v5_gn_9_31601' => 'lsa', 'Lsat_1_v5_gn_9_77320' => 'lsa', 'Manes.01G171300' => 'mes', 'Manes.01G171400' => 'mes', 'Manes.01G236100' => 'mes', 'Manes.02G130500' => 'mes', 'Manes.02G130600' => 'mes', 'Manes.03G180200' => 'mes', 'Manes.05G007000' => 'mes', 'Manes.08G084400' => 'mes', 'Manes.09G092600' => 'mes', 'Manes.15G027900' => 'mes', 'MBI04_g40948_MAGBIO' => 'mbi', 'MBI14_g12123_MAGBIO' => 'mbi', 'MBI18_g28915_MAGBIO' => 'mbi', 'MCO09G053' => 'mco', 'MCO11G782' => 'mco', 'MCO15G215' => 'mco', 'MD03G1088500' => 'mdo', 'MD03G1088600' => 'mdo', 'MD04G1130800' => 'mdo', 'MD09G1291700' => 'mdo', 'MD11G1097500' => 'mdo', 'MD11G1097600' => 'mdo', 'MD12G1143900' => 'mdo', 'MD13G1191400' => 'mdo', 'MD16G1191500' => 'mdo', 'Medtr1g085570' => 'mtr', 'Medtr1g104610' => 'mtr', 'Medtr2g097520' => 'mtr', 'Medtr4g021800' => 'mtr', 'Medtr4g021825' => 'mtr', 'Medtr4g064270' => 'mtr', 'Medtr4g064380' => 'mtr', 'Medtr7g062150' => 'mtr', 'MELO3C003138.2' => 'cme', 'MELO3C005187.2' => 'cme', 'MELO3C009252.2' => 'cme', 'MELO3C014481.2' => 'cme', 'MELO3C020616.2' => 'cme', 'MELO3C020617.2' => 'cme', 'MELO3C020618.2' => 'cme', 'Migut.G00328' => 'egut', 'Migut.J00320' => 'egut', 'Migut.L01000' => 'egut', 'Migut.L01953' => 'egut', 'MSTRG.10253' => 'ama', 'MSTRG.19077' => 'ama', 'MSTRG.26780' => 'ama', 'MSTRG.4023' => 'ama', 'MSTRG.5655' => 'ama', 'MSTRG.9992' => 'ama', 'Nitab4.5_0000043g0310' => 'nta', 'Nitab4.5_0000463g0080' => 'nta', 'Nitab4.5_0000705g0170' => 'nta', 'Nitab4.5_0001326g0060' => 'nta', 'Nitab4.5_0001628g0030' => 'nta', 'Nitab4.5_0002103g0110' => 'nta', 'Nitab4.5_0002946g0030' => 'nta', 'Nitab4.5_0004639g0030' => 'nta', 'Nn2g11149' => 'nnu', 'Nn2g13389' => 'nnu', 'Nn4g25326' => 'nnu', 'Nn4g26290' => 'nnu', 'Nn5g29865' => 'nnu', 'Oeu004163.1' => 'oeu', 'Oeu006901.1' => 'oeu', 'Oeu010096.1' => 'oeu', 'Oeu024340.1' => 'oeu', 'Oeu048369.1' => 'oeu', 'Os01g0973000' => 'osa', 'Os03g0273800' => 'osa', 'Os03g0701200' => 'osa', 'Os03g0834050' => 'osa', 'Os07g0634400' => 'osa', 'Peaxi162Scf00092g01414' => 'pax', 'Peaxi162Scf00165g00818' => 'pax', 'Peaxi162Scf00309g00516' => 'pax', 'Peaxi162Scf00774g00218' => 'pax', 'PGR004G1824' => 'pgr', 'PGR004G2606' => 'pgr', 'PGR031G2716' => 'pgr', 'PGR102G2460' => 'pgr', 'PGR142G2599' => 'pgr', 'PGSC0003DMG400000843' => 'stu', 'PGSC0003DMG400008829' => 'stu', 'PGSC0003DMG400030418' => 'stu', 'PGSC0003DMG400031834' => 'stu', 'PGSC0003DMG401028300' => 'stu', 'PGSC0003DMG402028300' => 'stu', 'Phvul.001G219300' => 'pvu', 'Phvul.007G056000' => 'pvu', 'Phvul.007G208000' => 'pvu', 'Phvul.008G119500' => 'pvu', 'Phvul.010G011200' => 'pvu', 'Phvul.010G014800' => 'pvu', 'Phvul.011G062900' => 'pvu', 'Phvul.L007043' => 'pvu', 'Potri.001G242300' => 'ptr', 'Potri.002G185300' => 'ptr', 'Potri.006G086900' => 'ptr', 'Potri.008G151700' => 'ptr', 'Potri.009G033500' => 'ptr', 'Potri.010G089300' => 'ptr', 'Potri.014G110800' => 'ptr', 'Pp3c27_8130' => 'ppa', 'Pp3c6_27410' => 'ppa', 'PRCOL_00001659' => 'pco', 'PRCOL_00001927' => 'pco', 'PRCOL_00003649' => 'pco', 'Prupe.1G011600' => 'ppe', 'Prupe.3G000800' => 'ppe', 'Prupe.3G001100' => 'ppe', 'Prupe.6G072700' => 'ppe', 'Prupe.6G072800' => 'ppe', 'Prupe.6G257300' => 'ppe', 'Prupe.8G033000' => 'ppe', 'Psat0s2633g0080' => 'psa', 'Psat0s3396g0080' => 'psa', 'Psat0s3396g0200' => 'psa', 'Psat3g139080' => 'psa', 'Psat5g285080' => 'psa', 'Psat6g157760' => 'psa', 'Psat6g208440' => 'psa', 'Psat7g215320' => 'psa', 'Psat7g215400' => 'psa', 'Psat7g235600' => 'psa', 'Psat7g235760' => 'psa', 'PSO063G4603' => 'pso', 'PSO210G0182' => 'pso', 'PSO210G0196' => 'pso', 'PSO339G0394' => 'pso', 'PSO339G4127' => 'pso', 'PSO513G0064' => 'pso', 'PSO761G0079' => 'pso', 'QL01p031003' => 'qlo', 'QL01p031078' => 'qlo', 'QL06p003004' => 'qlo', 'QL07p048731' => 'qlo', 'QL09p037427' => 'qlo', 'RcHm_v2.0_Chr3g0466361' => 'rch', 'RcHm_v2.0_Chr3g0485571' => 'rch', 'RcHm_v2.0_Chr4g0416551' => 'rch', 'RcHm_v2.0_Chr5g0065831' => 'rch', 'Rhsim01G0230500' => 'rsi', 'Rhsim05G0194000' => 'rsi', 'Rhsim08G0250400' => 'rsi', 'Sabra02G0131000' => 'sbr', 'Sabra06G0066300' => 'sbr', 'Sabra08G0115500' => 'sbr', 'Sabra09G0023900' => 'sbr', 'Sabra10G0054000' => 'sbr', 'Sabra14G0081500' => 'sbr', 'Sabra16G0147100' => 'sbr', 'SalBow2G2957' => 'sbo', 'SalBow4G3320' => 'sbo', 'SalBow8G1894' => 'sbo', 'Sc07g0007950' => 'sci', 'Sc12g0001360' => 'sci', 'Sc13g0004330' => 'sci', 'Sc20g0005010' => 'sci', 'Sed0000361' => 'sed', 'Sed0001706' => 'sed', 'Sed0002422' => 'sed', 'Sed0004029' => 'sed', 'Sed0004602' => 'sed', 'Sed0004943' => 'sed', 'Sed0008646' => 'sed', 'Sed0023313' => 'sed', 'Sed0024843' => 'sed', 'SEGI_00081' => 'sgi', 'SEGI_00947' => 'sgi', 'SEGI_04046' => 'sgi', 'SEGI_06880' => 'sgi', 'SEGI_09736' => 'sgi', 'SEGI_12741' => 'sgi', 'SEGI_14530' => 'sgi', 'SEGI_20705' => 'sgi', 'SEGI_26088' => 'sgi', 'SEGI_28323' => 'sgi', 'SEGI_33343' => 'sgi', 'SGA_v2.0_scaffold126G33775' => 'sas', 'SGA_v2.0_scaffold2G01337' => 'sas', 'SGA_v2.0_scaffold38G15006' => 'sas', 'SGA_v2.0_scaffold39G15264' => 'sas', 'SGA_v2.0_scaffold453G51880' => 'sas', 'SHI12696' => 'shi', 'SMO367G1096' => 'smo', 'Solyc01g068630.3' => 'sly', 'Solyc05g011880.3' => 'sly', 'Solyc06g076300.3' => 'sly', 'Solyc09g010940.4' => 'sly', 'Solyc09g075890.3' => 'sly', 'Sopen01g030560' => 'spe', 'Sopen05g006630' => 'spe', 'Sopen06g032720' => 'spe', 'Sopen09g005660' => 'spe', 'Sopen09g030690' => 'spe', 'Sp4g14540' => 'spa', 'Sp4g20030' => 'spa', 'Sp5g01320' => 'spa', 'Sp6g21170' => 'spa', 'Sp6g21180' => 'spa', 'Sp6g21190' => 'spa', 'Sp6g40220' => 'spa', 'TAR362G0122' => 'tar', 'TAR362G1338' => 'tar', 'TAR369G0590' => 'tar', 'TAR371G0824' => 'tar', 'TAR622G1429' => 'tar', 'TAR623G0734' => 'tar', 'TAR625G0441' => 'tar', 'TAR629G0976' => 'tar', 'TAR633G1195' => 'tar', 'TAR636G2660' => 'tar', 'THA.LOC104799440' => 'tha', 'THA.LOC104800966' => 'tha', 'THA.LOC104806559' => 'tha', 'THA.LOC104810765' => 'tha', 'THA.LOC104816266' => 'tha', 'THA.LOC104817419' => 'tha', 'THA.LOC104827021' => 'tha', 'Thecc.01G327400' => 'tca', 'Thecc.04G229200' => 'tca', 'Thecc.05G037400' => 'tca', 'Thecc.09G318600' => 'tca', 'Thecc.09G318700' => 'tca', 'Thhalv10006238m.g' => 'esa', 'Thhalv10014321m.g' => 'esa', 'Thhalv10014335m.g' => 'esa', 'Thhalv10015826m.g' => 'esa', 'Thhalv10017107m.g' => 'esa', 'Thhalv10017180m.g' => 'esa', 'Thhalv10029339m.g' => 'esa', 'TPR.G1699' => 'tpr', 'TPR.G23609' => 'tpr', 'TPR.G3081' => 'tpr', 'TPR.G40397' => 'tpr', 'TPR.G5522' => 'tpr', 'TPR.G5618' => 'tpr', 'TPR.G5626' => 'tpr', 'TWI09G1632' => 'twi', 'TWI23G1230' => 'twi', 'TWI53G1064' => 'twi', 'TWI59G0751' => 'twi', 'TWI74G0947' => 'twi', 'TWI77G0337' => 'twi', 'TWI79G1254' => 'twi', 'unitig_0.g2341' => 'ugi', 'unitig_26.g10006' => 'ugi', 'unitig_26.g10008' => 'ugi', 'unitig_26.g9192' => 'ugi', 'vmacro14547' => 'vma', 'vmacro15333' => 'vma', 'vmacro18743' => 'vma', 'vmacro20166' => 'vma', 'VMungo0331G0523' => 'vmu', 'VMungo0331G1202' => 'vmu', 'VMungo0720G1228' => 'vmu', 'VMungo0720G1514' => 'vmu', 'VMungo1080G0169' => 'vmu', 'VMungo1127G1475' => 'vmu', 'VMungo1383G1208' => 'vmu', 'VMungo1383G1698' => 'vmu', 'Zm00001eb012270' => 'zma', 'Zm00001eb054100' => 'zma', 'Zm00001eb063350' => 'zma', 'Zm00001eb328560' => 'zma', 'Zm00001eb342820' => 'zma', 'Zm00001eb362210' => 'zma', 'Zm00001eb397730' => 'zma', 'Zm00001eb399750' => 'zma' ), 'gf_id' => 'HOM05D000959', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000959' ), 'data_identifier' => 'HOM05D000959', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000959', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '622', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p07100' => 'bna', 'A03p11720' => 'bna', 'A05p08300' => 'bna', 'A05p13380' => 'bna', 'A09p54130' => 'bna', 'A10p16690' => 'bna', 'A10p16700' => 'bna', 'A10p33390' => 'bna', 'Aa31LG10G16020' => 'aar', 'Aa31LG1G11810' => 'aar', 'Aa31LG1G11830' => 'aar', 'Aa31LG1G22510' => 'aar', 'Aa31LG5G4890' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5793' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2310' => 'aag', 'Actinidia08499' => 'ach', 'Actinidia11262' => 'ach', 'Actinidia23926' => 'ach', 'Actinidia34420' => 'ach', 'Actinidia36970' => 'ach', 'Ah.02g111220' => 'amhyb', 'Ah.15g097750' => 'amhyb', 'AL4G27500' => 'aly', 'AL6G11470' => 'aly', 'AL8G35950' => 'aly', 'AL8G35960' => 'aly', 'AL8G35970' => 'aly', 'Aqoxy1G00912' => 'aox', 'Aqoxy2G02253' => 'aox', 'Aqoxy2G02411' => 'aox', 'Aqoxy5G00485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BZ66YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K8ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM4FUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6BF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HFV7XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25JBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0YNNV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MAKK6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P70IT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP2Z6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V61LZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YWP64R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3S9AI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7PGHH' => 'arhy', 'AT2G32150' => 'ath', 'AT3G62040' => 'ath', 'AT5G02230' => 'ath', 'AT5G59480' => 'ath', 'AT5G59490' => 'ath', 'ATR0332G060' => 'atr', 'ATR0559G190' => 'atr', 'ATR0693G294' => 'atr', 'Atru.chr3.3975' => 'acertr', 'Atru.chr3.3976' => 'acertr', 'Atru.chr3.3977' => 'acertr', 'Atru.chr4.2498' => 'acertr', 'Atru.chr5.838' => 'acertr', 'Atru.chr8.1990' => 'acertr', 'Atru.chr8.1991' => 'acertr', 'Atru.chr8.1992' => 'acertr', 'AUR62001759' => 'cqu', 'AUR62009545' => 'cqu', 'AUR62010474' => 'cqu', 'AUR62025820' => 'cqu', 'AUR62030422' => 'cqu', 'AUR62033605' => 'cqu', 'AUR62038615' => 'cqu', 'AUR62041347' => 'cqu', 'BcaB01g04574' => 'bca', 'BcaB02g09263' => 'bca', 'BcaB02g10453' => 'bca', 'BcaB05g22513' => 'bca', 'BcaB08g36253' => 'bca', 'BcaB08g36254' => 'bca', 'BcaC01g06519' => 'bca', 'BcaC02g11889' => 'bca', 'BcaC03g14010' => 'bca', 'BcaC03g18439' => 'bca', 'BcaC04g19765' => 'bca', 'BcaC09g48432' => 'bca', 'BcaNung07302' => 'bca', 'BolC2t06040H' => 'bol', 'BolC2t07346H' => 'bol', 'BolC3t13817H' => 'bol', 'BolC4t22625H' => 'bol', 'BolC4t23297H' => 'bol', 'BolC8t51278H' => 'bol', 'BolC9t58050H' => 'bol', 'BolC9t58051H' => 'bol', 'BolC9t60163H' => 'bol', 'BraA02t04712Z' => 'bra', 'BraA02t05791Z' => 'bra', 'BraA03t10483Z' => 'bra', 'BraA05t19795Z' => 'bra', 'BraA05t20276Z' => 'bra', 'BraA09t40827Z' => 'bra', 'BraA10t43750Z' => 'bra', 'BraA10t43751Z' => 'bra', 'BraA10t45370Z' => 'bra', 'C02p00400' => 'bna', 'C02p12460' => 'bna', 'C03p13680' => 'bna', 'C04p10270' => 'bna', 'C04p17500' => 'bna', 'C08p37010' => 'bna', 'C09p51880' => 'bna', 'C09p51890' => 'bna', 'C09p74300' => 'bna', 'CAN.G179.26' => 'can', 'CAN.G3384.1' => 'can', 'CAN.G394.68' => 'can', 'CAN.G907.13' => 'can', 'CANSAT11G0012' => 'cansat', 'CANSAT25G1586' => 'cansat', 'CANSAT35G0735' => 'cansat', 'CANSAT54G0556' => 'cansat', 'CANSAT64G0356' => 'cansat', 'CANSAT78G2042' => 'cansat', 'CARHR125920' => 'chi', 'CARHR131910' => 'chi', 'CARHR172390' => 'chi', 'CARHR211140' => 'chi', 'CARHR285850' => 'chi', 'CARHR285860' => 'chi', 'Carub.0004s1347' => 'cru', 'Carub.0004s1960' => 'cru', 'Carub.0005s2880' => 'cru', 'Carub.0006s0107' => 'cru', 'Carub.0008s2015' => 'cru', 'Carub.0008s2016' => 'cru', 'Carub.0008s2017' => 'cru', 'Ca_01315_v3' => 'car', 'Ca_05063_v3' => 'car', 'Ca_10231_v3' => 'car', 'Ca_10913_v3' => 'car', 'Ca_19156_v3' => 'car', 'Ca_23644_v3' => 'car', 'Ca_26735_v3' => 'car', 'Cc01_g13130' => 'ccan', 'Cc02_g21690' => 'ccan', 'Cc03_g03600' => 'ccan', 'Cc06_g02510' => 'ccan', 'CDE02G1265' => 'cde', 'CDE05G0415' => 'cde', 'CDE08G1082' => 'cde', 'Cfa005780' => 'cfa', 'Cfa011522' => 'cfa', 'Cfa011523' => 'cfa', 'Cfa015627' => 'cfa', 'Cfa017359' => 'cfa', 'Ciclev10005687m.g' => 'ccl', 'Ciclev10012173m.g' => 'ccl', 'Ciclev10021621m.g' => 'ccl', 'Ciclev10028968m.g' => 'ccl', 'Ciclev10029907m.g' => 'ccl', 'CiPaw.01G164800' => 'cil', 'CiPaw.07G083700' => 'cil', 'CiPaw.07G127000' => 'cil', 'CiPaw.07G136900' => 'cil', 'CiPaw.08G081700' => 'cil', 'CiPaw.09G194600' => 'cil', 'CiPaw.10G146500' => 'cil', 'CiPaw.13G091500' => 'cil', 'CiPaw.13G091600' => 'cil', 'ClCG00G003390' => 'cla', 'ClCG01G007220' => 'cla', 'ClCG03G001370' => 'cla', 'ClCG04G008100' => 'cla', 'ClCG06G006110' => 'cla', 'ClCG06G006130' => 'cla', 'ClCG10G021210' => 'cla', 'COL.COLO4_07648' => 'col', 'COL.COLO4_07650' => 'col', 'COL.COLO4_07651' => 'col', 'COL.COLO4_14780' => 'col', 'COL.COLO4_18546' => 'col', 'COL.COLO4_18547' => 'col', 'COL.COLO4_23103' => 'col', 'COL.COLO4_30419' => 'col', 'COL.COLO4_34232' => 'col', 'Cpa.g.sc169.20' => 'cpa', 'Cpa.g.sc57.45' => 'cpa', 'Cpa.g.sc58.124' => 'cpa', 'Cpa.g.sc58.125' => 'cpa', 'Cpa.g.sc81.118' => 'cpa', 'Cpa.g.sc81.119' => 'cpa', 'Cre12.g524700' => 'cre', 'CsaV3_1G034430' => 'csa', 'CsaV3_1G034440' => 'csa', 'CsaV3_1G034450' => 'csa', 'CsaV3_3G034830' => 'csa', 'CsaV3_4G025090' => 'csa', 'CsaV3_5G018660' => 'csa', 'CsaV3_6G038160' => 'csa', 'CSS0003447' => 'camsi', 'CSS0017840' => 'camsi', 'CSS0019260' => 'camsi', 'CSS0040375' => 'camsi', 'CSS0042533' => 'camsi', 'DCAR_005960' => 'dca', 'DCAR_012104' => 'dca', 'DCAR_012105' => 'dca', 'DCAR_012293' => 'dca', 'DCAR_015632' => 'dca', 'DCAR_024602' => 'dca', 'DCAR_028752' => 'dca', 'Dinv06261' => 'din', 'Dinv13982' => 'din', 'Dinv17029' => 'din', 'Dinv18463' => 'din', 'Dinv33181' => 'din', 'Dinv35585' => 'din', 'Dinv37161' => 'din', 'Dinv42977' => 'din', 'Dinv43122' => 'din', 'Dinv44517' => 'din', 'Duzib093G0256' => 'dzi', 'Duzib106G1254' => 'dzi', 'Duzib128G1789' => 'dzi', 'Duzib133G0633' => 'dzi', 'Duzib138G0510' => 'dzi', 'Duzib150G1084' => 'dzi', 'Duzib168G0488' => 'dzi', 'Duzib168G1523' => 'dzi', 'Duzib170G0133' => 'dzi', 'ECA234G1433' => 'eca', 'ECA236G1432' => 'eca', 'ECA236G2256' => 'eca', 'ECA236G2365' => 'eca', 'ECA236G4830' => 'eca', 'ECA248G1505' => 'eca', 'EL10Ac3g06431' => 'bvu', 'EL10Ac5g12577' => 'bvu', 'EL10Ac6g13533' => 'bvu', 'EL10Ac7g16045' => 'bvu', 'Eucgr.A01281' => 'egr', 'Eucgr.B02326' => 'egr', 'Eucgr.H03532' => 'egr', 'Eucgr.K00553' => 'egr', 'Eucgr.K03116' => 'egr', 'FAN02G3963' => 'fan', 'FAN05G0438' => 'fan', 'FAN09G2434' => 'fan', 'FAN12G3984' => 'fan', 'FAN14G0798' => 'fan', 'FAN17G0652' => 'fan', 'FAN19G1988' => 'fan', 'FAN22G0632' => 'fan', 'FAN23G0387' => 'fan', 'FAN26G1323' => 'fan', 'FAN28G0666' => 'fan', 'FvH4_1g26080' => 'fve', 'FvH4_3g36780' => 'fve', 'FvH4_4g15270' => 'fve', 'FvH4_6g13490' => 'fve', 'Glyma.01G098700' => 'gma', 'Glyma.03G065900' => 'gma', 'Glyma.03G073754' => 'gma', 'Glyma.03G073758' => 'gma', 'Glyma.03G083200' => 'gma', 'Glyma.03G225500' => 'gma', 'Glyma.05G037766' => 'gma', 'Glyma.07G133500' => 'gma', 'Glyma.10G139400' => 'gma', 'Glyma.10G248900' => 'gma', 'Glyma.11G137800' => 'gma', 'Glyma.12G061300' => 'gma', 'Glyma.13G337900' => 'gma', 'Glyma.15G036600' => 'gma', 'Glyma.18G182800' => 'gma', 'Glyma.19G222500' => 'gma', 'Glyma.20G144800' => 'gma', 'Gohir.A01G222000' => 'ghi', 'Gohir.A03G044000' => 'ghi', 'Gohir.A03G044100' => 'ghi', 'Gohir.A04G083100' => 'ghi', 'Gohir.A07G127200' => 'ghi', 'Gohir.A07G132400' => 'ghi', 'Gohir.A08G000700' => 'ghi', 'Gohir.A11G327300' => 'ghi', 'Gohir.D01G211500' => 'ghi', 'Gohir.D03G123400' => 'ghi', 'Gohir.D03G123500' => 'ghi', 'Gohir.D04G121800' => 'ghi', 'Gohir.D07G131500' => 'ghi', 'Gohir.D07G136600' => 'ghi', 'Gohir.D08G011600' => 'ghi', 'Gohir.D11G346200' => 'ghi', 'Gorai.001G142800' => 'gra', 'Gorai.001G148700' => 'gra', 'Gorai.002G257300' => 'gra', 'Gorai.003G130000' => 'gra', 'Gorai.003G130100' => 'gra', 'Gorai.004G005300' => 'gra', 'Gorai.007G376500' => 'gra', 'Gorai.012G104700' => 'gra', 'GSVIVG01017946001' => 'vvi', 'GSVIVG01024928001' => 'vvi', 'GSVIVG01028227001' => 'vvi', 'GSVIVG01034151001' => 'vvi', 'HanXRQChr05g0135031' => 'han', 'HanXRQChr05g0135041' => 'han', 'HanXRQChr05g0140021' => 'han', 'HanXRQChr06g0178981' => 'han', 'HanXRQChr07g0188251' => 'han', 'HanXRQChr08g0235311' => 'han', 'HanXRQChr09g0271011' => 'han', 'HanXRQChr10g0293321' => 'han', 'HanXRQChr13g0388171' => 'han', 'Haze_00916' => 'cav', 'Haze_05063' => 'cav', 'Haze_20814' => 'cav', 'Haze_24128' => 'cav', 'Hma1.2p1_0745F.1_g212010' => 'hma', 'Hma1.2p1_0757F.1_g213260' => 'hma', 'Hma1.2p1_0936F.1_g238840' => 'hma', 'Hma1.2p1_1735F.1_g299890' => 'hma', 'Hma1.2p1_1861F.1_g305685' => 'hma', 'HPP92_003397' => 'vpl', 'HPP92_012597' => 'vpl', 'HPP92_015520' => 'vpl', 'HPP92_015539' => 'vpl', 'HPP92_020373' => 'vpl', 'Hund04938' => 'sun', 'Hund10677' => 'sun', 'Hund11033' => 'sun', 'Hund12155' => 'sun', 'Lalb_Chr01g0022551' => 'lal', 'Lalb_Chr03g0042341' => 'lal', 'Lalb_Chr07g0192931' => 'lal', 'Lalb_Chr12g0209551' => 'lal', 'Lalb_Chr19g0125251' => 'lal', 'Lalb_Chr19g0137891' => 'lal', 'Lalb_Chr21g0304641' => 'lal', 'Lalb_Chr21g0309881' => 'lal', 'Lj1A5T12' => 'lonja', 'Lj1C148G10' => 'lonja', 'Lj2A93T83' => 'lonja', 'Lj3A738G68' => 'lonja', 'Lj3C966T1' => 'lonja', 'Lj3g0018958' => 'lja', 'Lj3g0021831' => 'lja', 'Lj3g0025443' => 'lja', 'Lj4g0026809' => 'lja', 'Lj5g0012558' => 'lja', 'Lj5g0021586' => 'lja', 'Lsat_1_v5_gn_5_156840' => 'lsa', 'Lsat_1_v5_gn_8_73460' => 'lsa', 'Lsat_1_v5_gn_8_73481' => 'lsa', 'Lsat_1_v5_gn_9_31601' => 'lsa', 'Lsat_1_v5_gn_9_77320' => 'lsa', 'Manes.01G171300' => 'mes', 'Manes.01G171400' => 'mes', 'Manes.01G236100' => 'mes', 'Manes.02G130500' => 'mes', 'Manes.02G130600' => 'mes', 'Manes.03G180200' => 'mes', 'Manes.05G007000' => 'mes', 'Manes.08G084400' => 'mes', 'Manes.09G092600' => 'mes', 'Manes.15G027900' => 'mes', 'MBI04_g40948_MAGBIO' => 'mbi', 'MBI14_g12123_MAGBIO' => 'mbi', 'MBI18_g28915_MAGBIO' => 'mbi', 'MCO09G053' => 'mco', 'MCO11G782' => 'mco', 'MCO15G215' => 'mco', 'MD03G1088500' => 'mdo', 'MD03G1088600' => 'mdo', 'MD04G1130800' => 'mdo', 'MD09G1291700' => 'mdo', 'MD11G1097500' => 'mdo', 'MD11G1097600' => 'mdo', 'MD12G1143900' => 'mdo', 'MD13G1191400' => 'mdo', 'MD16G1191500' => 'mdo', 'Medtr1g085570' => 'mtr', 'Medtr1g104610' => 'mtr', 'Medtr2g097520' => 'mtr', 'Medtr4g021800' => 'mtr', 'Medtr4g021825' => 'mtr', 'Medtr4g064270' => 'mtr', 'Medtr4g064380' => 'mtr', 'Medtr7g062150' => 'mtr', 'MELO3C003138.2' => 'cme', 'MELO3C005187.2' => 'cme', 'MELO3C009252.2' => 'cme', 'MELO3C014481.2' => 'cme', 'MELO3C020616.2' => 'cme', 'MELO3C020617.2' => 'cme', 'MELO3C020618.2' => 'cme', 'Migut.G00328' => 'egut', 'Migut.J00320' => 'egut', 'Migut.L01000' => 'egut', 'Migut.L01953' => 'egut', 'MSTRG.10253' => 'ama', 'MSTRG.19077' => 'ama', 'MSTRG.26780' => 'ama', 'MSTRG.4023' => 'ama', 'MSTRG.5655' => 'ama', 'MSTRG.9992' => 'ama', 'Nitab4.5_0000043g0310' => 'nta', 'Nitab4.5_0000463g0080' => 'nta', 'Nitab4.5_0000705g0170' => 'nta', 'Nitab4.5_0001326g0060' => 'nta', 'Nitab4.5_0001628g0030' => 'nta', 'Nitab4.5_0002103g0110' => 'nta', 'Nitab4.5_0002946g0030' => 'nta', 'Nitab4.5_0004639g0030' => 'nta', 'Nn2g11149' => 'nnu', 'Nn2g13389' => 'nnu', 'Nn4g25326' => 'nnu', 'Nn4g26290' => 'nnu', 'Nn5g29865' => 'nnu', 'Oeu004163.1' => 'oeu', 'Oeu006901.1' => 'oeu', 'Oeu010096.1' => 'oeu', 'Oeu024340.1' => 'oeu', 'Oeu048369.1' => 'oeu', 'Os01g0973000' => 'osa', 'Os03g0273800' => 'osa', 'Os03g0701200' => 'osa', 'Os03g0834050' => 'osa', 'Os07g0634400' => 'osa', 'Peaxi162Scf00092g01414' => 'pax', 'Peaxi162Scf00165g00818' => 'pax', 'Peaxi162Scf00309g00516' => 'pax', 'Peaxi162Scf00774g00218' => 'pax', 'PGR004G1824' => 'pgr', 'PGR004G2606' => 'pgr', 'PGR031G2716' => 'pgr', 'PGR102G2460' => 'pgr', 'PGR142G2599' => 'pgr', 'PGSC0003DMG400000843' => 'stu', 'PGSC0003DMG400008829' => 'stu', 'PGSC0003DMG400030418' => 'stu', 'PGSC0003DMG400031834' => 'stu', 'PGSC0003DMG401028300' => 'stu', 'PGSC0003DMG402028300' => 'stu', 'Phvul.001G219300' => 'pvu', 'Phvul.007G056000' => 'pvu', 'Phvul.007G208000' => 'pvu', 'Phvul.008G119500' => 'pvu', 'Phvul.010G011200' => 'pvu', 'Phvul.010G014800' => 'pvu', 'Phvul.011G062900' => 'pvu', 'Phvul.L007043' => 'pvu', 'Potri.001G242300' => 'ptr', 'Potri.002G185300' => 'ptr', 'Potri.006G086900' => 'ptr', 'Potri.008G151700' => 'ptr', 'Potri.009G033500' => 'ptr', 'Potri.010G089300' => 'ptr', 'Potri.014G110800' => 'ptr', 'Pp3c27_8130' => 'ppa', 'Pp3c6_27410' => 'ppa', 'PRCOL_00001659' => 'pco', 'PRCOL_00001927' => 'pco', 'PRCOL_00003649' => 'pco', 'Prupe.1G011600' => 'ppe', 'Prupe.3G000800' => 'ppe', 'Prupe.3G001100' => 'ppe', 'Prupe.6G072700' => 'ppe', 'Prupe.6G072800' => 'ppe', 'Prupe.6G257300' => 'ppe', 'Prupe.8G033000' => 'ppe', 'Psat0s2633g0080' => 'psa', 'Psat0s3396g0080' => 'psa', 'Psat0s3396g0200' => 'psa', 'Psat3g139080' => 'psa', 'Psat5g285080' => 'psa', 'Psat6g157760' => 'psa', 'Psat6g208440' => 'psa', 'Psat7g215320' => 'psa', 'Psat7g215400' => 'psa', 'Psat7g235600' => 'psa', 'Psat7g235760' => 'psa', 'PSO063G4603' => 'pso', 'PSO210G0182' => 'pso', 'PSO210G0196' => 'pso', 'PSO339G0394' => 'pso', 'PSO339G4127' => 'pso', 'PSO513G0064' => 'pso', 'PSO761G0079' => 'pso', 'QL01p031003' => 'qlo', 'QL01p031078' => 'qlo', 'QL06p003004' => 'qlo', 'QL07p048731' => 'qlo', 'QL09p037427' => 'qlo', 'RcHm_v2.0_Chr3g0466361' => 'rch', 'RcHm_v2.0_Chr3g0485571' => 'rch', 'RcHm_v2.0_Chr4g0416551' => 'rch', 'RcHm_v2.0_Chr5g0065831' => 'rch', 'Rhsim01G0230500' => 'rsi', 'Rhsim05G0194000' => 'rsi', 'Rhsim08G0250400' => 'rsi', 'Sabra02G0131000' => 'sbr', 'Sabra06G0066300' => 'sbr', 'Sabra08G0115500' => 'sbr', 'Sabra09G0023900' => 'sbr', 'Sabra10G0054000' => 'sbr', 'Sabra14G0081500' => 'sbr', 'Sabra16G0147100' => 'sbr', 'SalBow2G2957' => 'sbo', 'SalBow4G3320' => 'sbo', 'SalBow8G1894' => 'sbo', 'Sc07g0007950' => 'sci', 'Sc12g0001360' => 'sci', 'Sc13g0004330' => 'sci', 'Sc20g0005010' => 'sci', 'Sed0000361' => 'sed', 'Sed0001706' => 'sed', 'Sed0002422' => 'sed', 'Sed0004029' => 'sed', 'Sed0004602' => 'sed', 'Sed0004943' => 'sed', 'Sed0008646' => 'sed', 'Sed0023313' => 'sed', 'Sed0024843' => 'sed', 'SEGI_00081' => 'sgi', 'SEGI_00947' => 'sgi', 'SEGI_04046' => 'sgi', 'SEGI_06880' => 'sgi', 'SEGI_09736' => 'sgi', 'SEGI_12741' => 'sgi', 'SEGI_14530' => 'sgi', 'SEGI_20705' => 'sgi', 'SEGI_26088' => 'sgi', 'SEGI_28323' => 'sgi', 'SEGI_33343' => 'sgi', 'SGA_v2.0_scaffold126G33775' => 'sas', 'SGA_v2.0_scaffold2G01337' => 'sas', 'SGA_v2.0_scaffold38G15006' => 'sas', 'SGA_v2.0_scaffold39G15264' => 'sas', 'SGA_v2.0_scaffold453G51880' => 'sas', 'SHI12696' => 'shi', 'SMO367G1096' => 'smo', 'Solyc01g068630.3' => 'sly', 'Solyc05g011880.3' => 'sly', 'Solyc06g076300.3' => 'sly', 'Solyc09g010940.4' => 'sly', 'Solyc09g075890.3' => 'sly', 'Sopen01g030560' => 'spe', 'Sopen05g006630' => 'spe', 'Sopen06g032720' => 'spe', 'Sopen09g005660' => 'spe', 'Sopen09g030690' => 'spe', 'Sp4g14540' => 'spa', 'Sp4g20030' => 'spa', 'Sp5g01320' => 'spa', 'Sp6g21170' => 'spa', 'Sp6g21180' => 'spa', 'Sp6g21190' => 'spa', 'Sp6g40220' => 'spa', 'TAR362G0122' => 'tar', 'TAR362G1338' => 'tar', 'TAR369G0590' => 'tar', 'TAR371G0824' => 'tar', 'TAR622G1429' => 'tar', 'TAR623G0734' => 'tar', 'TAR625G0441' => 'tar', 'TAR629G0976' => 'tar', 'TAR633G1195' => 'tar', 'TAR636G2660' => 'tar', 'THA.LOC104799440' => 'tha', 'THA.LOC104800966' => 'tha', 'THA.LOC104806559' => 'tha', 'THA.LOC104810765' => 'tha', 'THA.LOC104816266' => 'tha', 'THA.LOC104817419' => 'tha', 'THA.LOC104827021' => 'tha', 'Thecc.01G327400' => 'tca', 'Thecc.04G229200' => 'tca', 'Thecc.05G037400' => 'tca', 'Thecc.09G318600' => 'tca', 'Thecc.09G318700' => 'tca', 'Thhalv10006238m.g' => 'esa', 'Thhalv10014321m.g' => 'esa', 'Thhalv10014335m.g' => 'esa', 'Thhalv10015826m.g' => 'esa', 'Thhalv10017107m.g' => 'esa', 'Thhalv10017180m.g' => 'esa', 'Thhalv10029339m.g' => 'esa', 'TPR.G1699' => 'tpr', 'TPR.G23609' => 'tpr', 'TPR.G3081' => 'tpr', 'TPR.G40397' => 'tpr', 'TPR.G5522' => 'tpr', 'TPR.G5618' => 'tpr', 'TPR.G5626' => 'tpr', 'TWI09G1632' => 'twi', 'TWI23G1230' => 'twi', 'TWI53G1064' => 'twi', 'TWI59G0751' => 'twi', 'TWI74G0947' => 'twi', 'TWI77G0337' => 'twi', 'TWI79G1254' => 'twi', 'unitig_0.g2341' => 'ugi', 'unitig_26.g10006' => 'ugi', 'unitig_26.g10008' => 'ugi', 'unitig_26.g9192' => 'ugi', 'vmacro14547' => 'vma', 'vmacro15333' => 'vma', 'vmacro18743' => 'vma', 'vmacro20166' => 'vma', 'VMungo0331G0523' => 'vmu', 'VMungo0331G1202' => 'vmu', 'VMungo0720G1228' => 'vmu', 'VMungo0720G1514' => 'vmu', 'VMungo1080G0169' => 'vmu', 'VMungo1127G1475' => 'vmu', 'VMungo1383G1208' => 'vmu', 'VMungo1383G1698' => 'vmu', 'Zm00001eb012270' => 'zma', 'Zm00001eb054100' => 'zma', 'Zm00001eb063350' => 'zma', 'Zm00001eb328560' => 'zma', 'Zm00001eb342820' => 'zma', 'Zm00001eb362210' => 'zma', 'Zm00001eb397730' => 'zma', 'Zm00001eb399750' => 'zma' ) $gf_id = 'HOM05D000959' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000959' ) $data_identifier = 'HOM05D000959' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 5, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 5, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 10, 'mbi' => (int) 3, 'mco' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 2, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 3, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 11, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399750' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000959', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '622', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p07100' => 'bna', 'A03p11720' => 'bna', 'A05p08300' => 'bna', 'A05p13380' => 'bna', 'A09p54130' => 'bna', 'A10p16690' => 'bna', 'A10p16700' => 'bna', 'A10p33390' => 'bna', 'Aa31LG10G16020' => 'aar', 'Aa31LG1G11810' => 'aar', 'Aa31LG1G11830' => 'aar', 'Aa31LG1G22510' => 'aar', 'Aa31LG5G4890' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5793' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2310' => 'aag', 'Actinidia08499' => 'ach', 'Actinidia11262' => 'ach', 'Actinidia23926' => 'ach', 'Actinidia34420' => 'ach', 'Actinidia36970' => 'ach', 'Ah.02g111220' => 'amhyb', 'Ah.15g097750' => 'amhyb', 'AL4G27500' => 'aly', 'AL6G11470' => 'aly', 'AL8G35950' => 'aly', 'AL8G35960' => 'aly', 'AL8G35970' => 'aly', 'Aqoxy1G00912' => 'aox', 'Aqoxy2G02253' => 'aox', 'Aqoxy2G02411' => 'aox', 'Aqoxy5G00485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BZ66YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K8ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM4FUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6BF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HFV7XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25JBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0YNNV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MAKK6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P70IT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP2Z6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V61LZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YWP64R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3S9AI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7PGHH' => 'arhy', 'AT2G32150' => 'ath', 'AT3G62040' => 'ath', 'AT5G02230' => 'ath', 'AT5G59480' => 'ath', 'AT5G59490' => 'ath', 'ATR0332G060' => 'atr', 'ATR0559G190' => 'atr', 'ATR0693G294' => 'atr', 'Atru.chr3.3975' => 'acertr', 'Atru.chr3.3976' => 'acertr', 'Atru.chr3.3977' => 'acertr', 'Atru.chr4.2498' => 'acertr', 'Atru.chr5.838' => 'acertr', 'Atru.chr8.1990' => 'acertr', 'Atru.chr8.1991' => 'acertr', 'Atru.chr8.1992' => 'acertr', 'AUR62001759' => 'cqu', 'AUR62009545' => 'cqu', 'AUR62010474' => 'cqu', 'AUR62025820' => 'cqu', 'AUR62030422' => 'cqu', 'AUR62033605' => 'cqu', 'AUR62038615' => 'cqu', 'AUR62041347' => 'cqu', 'BcaB01g04574' => 'bca', 'BcaB02g09263' => 'bca', 'BcaB02g10453' => 'bca', 'BcaB05g22513' => 'bca', 'BcaB08g36253' => 'bca', 'BcaB08g36254' => 'bca', 'BcaC01g06519' => 'bca', 'BcaC02g11889' => 'bca', 'BcaC03g14010' => 'bca', 'BcaC03g18439' => 'bca', 'BcaC04g19765' => 'bca', 'BcaC09g48432' => 'bca', 'BcaNung07302' => 'bca', 'BolC2t06040H' => 'bol', 'BolC2t07346H' => 'bol', 'BolC3t13817H' => 'bol', 'BolC4t22625H' => 'bol', 'BolC4t23297H' => 'bol', 'BolC8t51278H' => 'bol', 'BolC9t58050H' => 'bol', 'BolC9t58051H' => 'bol', 'BolC9t60163H' => 'bol', 'BraA02t04712Z' => 'bra', 'BraA02t05791Z' => 'bra', 'BraA03t10483Z' => 'bra', 'BraA05t19795Z' => 'bra', 'BraA05t20276Z' => 'bra', 'BraA09t40827Z' => 'bra', 'BraA10t43750Z' => 'bra', 'BraA10t43751Z' => 'bra', 'BraA10t45370Z' => 'bra', 'C02p00400' => 'bna', 'C02p12460' => 'bna', 'C03p13680' => 'bna', 'C04p10270' => 'bna', 'C04p17500' => 'bna', 'C08p37010' => 'bna', 'C09p51880' => 'bna', 'C09p51890' => 'bna', 'C09p74300' => 'bna', 'CAN.G179.26' => 'can', 'CAN.G3384.1' => 'can', 'CAN.G394.68' => 'can', 'CAN.G907.13' => 'can', 'CANSAT11G0012' => 'cansat', 'CANSAT25G1586' => 'cansat', 'CANSAT35G0735' => 'cansat', 'CANSAT54G0556' => 'cansat', 'CANSAT64G0356' => 'cansat', 'CANSAT78G2042' => 'cansat', 'CARHR125920' => 'chi', 'CARHR131910' => 'chi', 'CARHR172390' => 'chi', 'CARHR211140' => 'chi', 'CARHR285850' => 'chi', 'CARHR285860' => 'chi', 'Carub.0004s1347' => 'cru', 'Carub.0004s1960' => 'cru', 'Carub.0005s2880' => 'cru', 'Carub.0006s0107' => 'cru', 'Carub.0008s2015' => 'cru', 'Carub.0008s2016' => 'cru', 'Carub.0008s2017' => 'cru', 'Ca_01315_v3' => 'car', 'Ca_05063_v3' => 'car', 'Ca_10231_v3' => 'car', 'Ca_10913_v3' => 'car', 'Ca_19156_v3' => 'car', 'Ca_23644_v3' => 'car', 'Ca_26735_v3' => 'car', 'Cc01_g13130' => 'ccan', 'Cc02_g21690' => 'ccan', 'Cc03_g03600' => 'ccan', 'Cc06_g02510' => 'ccan', 'CDE02G1265' => 'cde', 'CDE05G0415' => 'cde', 'CDE08G1082' => 'cde', 'Cfa005780' => 'cfa', 'Cfa011522' => 'cfa', 'Cfa011523' => 'cfa', 'Cfa015627' => 'cfa', 'Cfa017359' => 'cfa', 'Ciclev10005687m.g' => 'ccl', 'Ciclev10012173m.g' => 'ccl', 'Ciclev10021621m.g' => 'ccl', 'Ciclev10028968m.g' => 'ccl', 'Ciclev10029907m.g' => 'ccl', 'CiPaw.01G164800' => 'cil', 'CiPaw.07G083700' => 'cil', 'CiPaw.07G127000' => 'cil', 'CiPaw.07G136900' => 'cil', 'CiPaw.08G081700' => 'cil', 'CiPaw.09G194600' => 'cil', 'CiPaw.10G146500' => 'cil', 'CiPaw.13G091500' => 'cil', 'CiPaw.13G091600' => 'cil', 'ClCG00G003390' => 'cla', 'ClCG01G007220' => 'cla', 'ClCG03G001370' => 'cla', 'ClCG04G008100' => 'cla', 'ClCG06G006110' => 'cla', 'ClCG06G006130' => 'cla', 'ClCG10G021210' => 'cla', 'COL.COLO4_07648' => 'col', 'COL.COLO4_07650' => 'col', 'COL.COLO4_07651' => 'col', 'COL.COLO4_14780' => 'col', 'COL.COLO4_18546' => 'col', 'COL.COLO4_18547' => 'col', 'COL.COLO4_23103' => 'col', 'COL.COLO4_30419' => 'col', 'COL.COLO4_34232' => 'col', 'Cpa.g.sc169.20' => 'cpa', 'Cpa.g.sc57.45' => 'cpa', 'Cpa.g.sc58.124' => 'cpa', 'Cpa.g.sc58.125' => 'cpa', 'Cpa.g.sc81.118' => 'cpa', 'Cpa.g.sc81.119' => 'cpa', 'Cre12.g524700' => 'cre', 'CsaV3_1G034430' => 'csa', 'CsaV3_1G034440' => 'csa', 'CsaV3_1G034450' => 'csa', 'CsaV3_3G034830' => 'csa', 'CsaV3_4G025090' => 'csa', 'CsaV3_5G018660' => 'csa', 'CsaV3_6G038160' => 'csa', 'CSS0003447' => 'camsi', 'CSS0017840' => 'camsi', 'CSS0019260' => 'camsi', 'CSS0040375' => 'camsi', 'CSS0042533' => 'camsi', 'DCAR_005960' => 'dca', 'DCAR_012104' => 'dca', 'DCAR_012105' => 'dca', 'DCAR_012293' => 'dca', 'DCAR_015632' => 'dca', 'DCAR_024602' => 'dca', 'DCAR_028752' => 'dca', 'Dinv06261' => 'din', 'Dinv13982' => 'din', 'Dinv17029' => 'din', 'Dinv18463' => 'din', 'Dinv33181' => 'din', 'Dinv35585' => 'din', 'Dinv37161' => 'din', 'Dinv42977' => 'din', 'Dinv43122' => 'din', 'Dinv44517' => 'din', 'Duzib093G0256' => 'dzi', 'Duzib106G1254' => 'dzi', 'Duzib128G1789' => 'dzi', 'Duzib133G0633' => 'dzi', 'Duzib138G0510' => 'dzi', 'Duzib150G1084' => 'dzi', 'Duzib168G0488' => 'dzi', 'Duzib168G1523' => 'dzi', 'Duzib170G0133' => 'dzi', 'ECA234G1433' => 'eca', 'ECA236G1432' => 'eca', 'ECA236G2256' => 'eca', 'ECA236G2365' => 'eca', 'ECA236G4830' => 'eca', 'ECA248G1505' => 'eca', 'EL10Ac3g06431' => 'bvu', 'EL10Ac5g12577' => 'bvu', 'EL10Ac6g13533' => 'bvu', 'EL10Ac7g16045' => 'bvu', 'Eucgr.A01281' => 'egr', 'Eucgr.B02326' => 'egr', 'Eucgr.H03532' => 'egr', 'Eucgr.K00553' => 'egr', 'Eucgr.K03116' => 'egr', 'FAN02G3963' => 'fan', 'FAN05G0438' => 'fan', 'FAN09G2434' => 'fan', 'FAN12G3984' => 'fan', 'FAN14G0798' => 'fan', 'FAN17G0652' => 'fan', 'FAN19G1988' => 'fan', 'FAN22G0632' => 'fan', 'FAN23G0387' => 'fan', 'FAN26G1323' => 'fan', 'FAN28G0666' => 'fan', 'FvH4_1g26080' => 'fve', 'FvH4_3g36780' => 'fve', 'FvH4_4g15270' => 'fve', 'FvH4_6g13490' => 'fve', 'Glyma.01G098700' => 'gma', 'Glyma.03G065900' => 'gma', 'Glyma.03G073754' => 'gma', 'Glyma.03G073758' => 'gma', 'Glyma.03G083200' => 'gma', 'Glyma.03G225500' => 'gma', 'Glyma.05G037766' => 'gma', 'Glyma.07G133500' => 'gma', 'Glyma.10G139400' => 'gma', 'Glyma.10G248900' => 'gma', 'Glyma.11G137800' => 'gma', 'Glyma.12G061300' => 'gma', 'Glyma.13G337900' => 'gma', 'Glyma.15G036600' => 'gma', 'Glyma.18G182800' => 'gma', 'Glyma.19G222500' => 'gma', 'Glyma.20G144800' => 'gma', 'Gohir.A01G222000' => 'ghi', 'Gohir.A03G044000' => 'ghi', 'Gohir.A03G044100' => 'ghi', 'Gohir.A04G083100' => 'ghi', 'Gohir.A07G127200' => 'ghi', 'Gohir.A07G132400' => 'ghi', 'Gohir.A08G000700' => 'ghi', 'Gohir.A11G327300' => 'ghi', 'Gohir.D01G211500' => 'ghi', 'Gohir.D03G123400' => 'ghi', 'Gohir.D03G123500' => 'ghi', 'Gohir.D04G121800' => 'ghi', 'Gohir.D07G131500' => 'ghi', 'Gohir.D07G136600' => 'ghi', 'Gohir.D08G011600' => 'ghi', 'Gohir.D11G346200' => 'ghi', 'Gorai.001G142800' => 'gra', 'Gorai.001G148700' => 'gra', 'Gorai.002G257300' => 'gra', 'Gorai.003G130000' => 'gra', 'Gorai.003G130100' => 'gra', 'Gorai.004G005300' => 'gra', 'Gorai.007G376500' => 'gra', 'Gorai.012G104700' => 'gra', 'GSVIVG01017946001' => 'vvi', 'GSVIVG01024928001' => 'vvi', 'GSVIVG01028227001' => 'vvi', 'GSVIVG01034151001' => 'vvi', 'HanXRQChr05g0135031' => 'han', 'HanXRQChr05g0135041' => 'han', 'HanXRQChr05g0140021' => 'han', 'HanXRQChr06g0178981' => 'han', 'HanXRQChr07g0188251' => 'han', 'HanXRQChr08g0235311' => 'han', 'HanXRQChr09g0271011' => 'han', 'HanXRQChr10g0293321' => 'han', 'HanXRQChr13g0388171' => 'han', 'Haze_00916' => 'cav', 'Haze_05063' => 'cav', 'Haze_20814' => 'cav', 'Haze_24128' => 'cav', 'Hma1.2p1_0745F.1_g212010' => 'hma', 'Hma1.2p1_0757F.1_g213260' => 'hma', 'Hma1.2p1_0936F.1_g238840' => 'hma', 'Hma1.2p1_1735F.1_g299890' => 'hma', 'Hma1.2p1_1861F.1_g305685' => 'hma', 'HPP92_003397' => 'vpl', 'HPP92_012597' => 'vpl', 'HPP92_015520' => 'vpl', 'HPP92_015539' => 'vpl', 'HPP92_020373' => 'vpl', 'Hund04938' => 'sun', 'Hund10677' => 'sun', 'Hund11033' => 'sun', 'Hund12155' => 'sun', 'Lalb_Chr01g0022551' => 'lal', 'Lalb_Chr03g0042341' => 'lal', 'Lalb_Chr07g0192931' => 'lal', 'Lalb_Chr12g0209551' => 'lal', 'Lalb_Chr19g0125251' => 'lal', 'Lalb_Chr19g0137891' => 'lal', 'Lalb_Chr21g0304641' => 'lal', 'Lalb_Chr21g0309881' => 'lal', 'Lj1A5T12' => 'lonja', 'Lj1C148G10' => 'lonja', 'Lj2A93T83' => 'lonja', 'Lj3A738G68' => 'lonja', 'Lj3C966T1' => 'lonja', 'Lj3g0018958' => 'lja', 'Lj3g0021831' => 'lja', 'Lj3g0025443' => 'lja', 'Lj4g0026809' => 'lja', 'Lj5g0012558' => 'lja', 'Lj5g0021586' => 'lja', 'Lsat_1_v5_gn_5_156840' => 'lsa', 'Lsat_1_v5_gn_8_73460' => 'lsa', 'Lsat_1_v5_gn_8_73481' => 'lsa', 'Lsat_1_v5_gn_9_31601' => 'lsa', 'Lsat_1_v5_gn_9_77320' => 'lsa', 'Manes.01G171300' => 'mes', 'Manes.01G171400' => 'mes', 'Manes.01G236100' => 'mes', 'Manes.02G130500' => 'mes', 'Manes.02G130600' => 'mes', 'Manes.03G180200' => 'mes', 'Manes.05G007000' => 'mes', 'Manes.08G084400' => 'mes', 'Manes.09G092600' => 'mes', 'Manes.15G027900' => 'mes', 'MBI04_g40948_MAGBIO' => 'mbi', 'MBI14_g12123_MAGBIO' => 'mbi', 'MBI18_g28915_MAGBIO' => 'mbi', 'MCO09G053' => 'mco', 'MCO11G782' => 'mco', 'MCO15G215' => 'mco', 'MD03G1088500' => 'mdo', 'MD03G1088600' => 'mdo', 'MD04G1130800' => 'mdo', 'MD09G1291700' => 'mdo', 'MD11G1097500' => 'mdo', 'MD11G1097600' => 'mdo', 'MD12G1143900' => 'mdo', 'MD13G1191400' => 'mdo', 'MD16G1191500' => 'mdo', 'Medtr1g085570' => 'mtr', 'Medtr1g104610' => 'mtr', 'Medtr2g097520' => 'mtr', 'Medtr4g021800' => 'mtr', 'Medtr4g021825' => 'mtr', 'Medtr4g064270' => 'mtr', 'Medtr4g064380' => 'mtr', 'Medtr7g062150' => 'mtr', 'MELO3C003138.2' => 'cme', 'MELO3C005187.2' => 'cme', 'MELO3C009252.2' => 'cme', 'MELO3C014481.2' => 'cme', 'MELO3C020616.2' => 'cme', 'MELO3C020617.2' => 'cme', 'MELO3C020618.2' => 'cme', 'Migut.G00328' => 'egut', 'Migut.J00320' => 'egut', 'Migut.L01000' => 'egut', 'Migut.L01953' => 'egut', 'MSTRG.10253' => 'ama', 'MSTRG.19077' => 'ama', 'MSTRG.26780' => 'ama', 'MSTRG.4023' => 'ama', 'MSTRG.5655' => 'ama', 'MSTRG.9992' => 'ama', 'Nitab4.5_0000043g0310' => 'nta', 'Nitab4.5_0000463g0080' => 'nta', 'Nitab4.5_0000705g0170' => 'nta', 'Nitab4.5_0001326g0060' => 'nta', 'Nitab4.5_0001628g0030' => 'nta', 'Nitab4.5_0002103g0110' => 'nta', 'Nitab4.5_0002946g0030' => 'nta', 'Nitab4.5_0004639g0030' => 'nta', 'Nn2g11149' => 'nnu', 'Nn2g13389' => 'nnu', 'Nn4g25326' => 'nnu', 'Nn4g26290' => 'nnu', 'Nn5g29865' => 'nnu', 'Oeu004163.1' => 'oeu', 'Oeu006901.1' => 'oeu', 'Oeu010096.1' => 'oeu', 'Oeu024340.1' => 'oeu', 'Oeu048369.1' => 'oeu', 'Os01g0973000' => 'osa', 'Os03g0273800' => 'osa', 'Os03g0701200' => 'osa', 'Os03g0834050' => 'osa', 'Os07g0634400' => 'osa', 'Peaxi162Scf00092g01414' => 'pax', 'Peaxi162Scf00165g00818' => 'pax', 'Peaxi162Scf00309g00516' => 'pax', 'Peaxi162Scf00774g00218' => 'pax', 'PGR004G1824' => 'pgr', 'PGR004G2606' => 'pgr', 'PGR031G2716' => 'pgr', 'PGR102G2460' => 'pgr', 'PGR142G2599' => 'pgr', 'PGSC0003DMG400000843' => 'stu', 'PGSC0003DMG400008829' => 'stu', 'PGSC0003DMG400030418' => 'stu', 'PGSC0003DMG400031834' => 'stu', 'PGSC0003DMG401028300' => 'stu', 'PGSC0003DMG402028300' => 'stu', 'Phvul.001G219300' => 'pvu', 'Phvul.007G056000' => 'pvu', 'Phvul.007G208000' => 'pvu', 'Phvul.008G119500' => 'pvu', 'Phvul.010G011200' => 'pvu', 'Phvul.010G014800' => 'pvu', 'Phvul.011G062900' => 'pvu', 'Phvul.L007043' => 'pvu', 'Potri.001G242300' => 'ptr', 'Potri.002G185300' => 'ptr', 'Potri.006G086900' => 'ptr', 'Potri.008G151700' => 'ptr', 'Potri.009G033500' => 'ptr', 'Potri.010G089300' => 'ptr', 'Potri.014G110800' => 'ptr', 'Pp3c27_8130' => 'ppa', 'Pp3c6_27410' => 'ppa', 'PRCOL_00001659' => 'pco', 'PRCOL_00001927' => 'pco', 'PRCOL_00003649' => 'pco', 'Prupe.1G011600' => 'ppe', 'Prupe.3G000800' => 'ppe', 'Prupe.3G001100' => 'ppe', 'Prupe.6G072700' => 'ppe', 'Prupe.6G072800' => 'ppe', 'Prupe.6G257300' => 'ppe', 'Prupe.8G033000' => 'ppe', 'Psat0s2633g0080' => 'psa', 'Psat0s3396g0080' => 'psa', 'Psat0s3396g0200' => 'psa', 'Psat3g139080' => 'psa', 'Psat5g285080' => 'psa', 'Psat6g157760' => 'psa', 'Psat6g208440' => 'psa', 'Psat7g215320' => 'psa', 'Psat7g215400' => 'psa', 'Psat7g235600' => 'psa', 'Psat7g235760' => 'psa', 'PSO063G4603' => 'pso', 'PSO210G0182' => 'pso', 'PSO210G0196' => 'pso', 'PSO339G0394' => 'pso', 'PSO339G4127' => 'pso', 'PSO513G0064' => 'pso', 'PSO761G0079' => 'pso', 'QL01p031003' => 'qlo', 'QL01p031078' => 'qlo', 'QL06p003004' => 'qlo', 'QL07p048731' => 'qlo', 'QL09p037427' => 'qlo', 'RcHm_v2.0_Chr3g0466361' => 'rch', 'RcHm_v2.0_Chr3g0485571' => 'rch', 'RcHm_v2.0_Chr4g0416551' => 'rch', 'RcHm_v2.0_Chr5g0065831' => 'rch', 'Rhsim01G0230500' => 'rsi', 'Rhsim05G0194000' => 'rsi', 'Rhsim08G0250400' => 'rsi', 'Sabra02G0131000' => 'sbr', 'Sabra06G0066300' => 'sbr', 'Sabra08G0115500' => 'sbr', 'Sabra09G0023900' => 'sbr', 'Sabra10G0054000' => 'sbr', 'Sabra14G0081500' => 'sbr', 'Sabra16G0147100' => 'sbr', 'SalBow2G2957' => 'sbo', 'SalBow4G3320' => 'sbo', 'SalBow8G1894' => 'sbo', 'Sc07g0007950' => 'sci', 'Sc12g0001360' => 'sci', 'Sc13g0004330' => 'sci', 'Sc20g0005010' => 'sci', 'Sed0000361' => 'sed', 'Sed0001706' => 'sed', 'Sed0002422' => 'sed', 'Sed0004029' => 'sed', 'Sed0004602' => 'sed', 'Sed0004943' => 'sed', 'Sed0008646' => 'sed', 'Sed0023313' => 'sed', 'Sed0024843' => 'sed', 'SEGI_00081' => 'sgi', 'SEGI_00947' => 'sgi', 'SEGI_04046' => 'sgi', 'SEGI_06880' => 'sgi', 'SEGI_09736' => 'sgi', 'SEGI_12741' => 'sgi', 'SEGI_14530' => 'sgi', 'SEGI_20705' => 'sgi', 'SEGI_26088' => 'sgi', 'SEGI_28323' => 'sgi', 'SEGI_33343' => 'sgi', 'SGA_v2.0_scaffold126G33775' => 'sas', 'SGA_v2.0_scaffold2G01337' => 'sas', 'SGA_v2.0_scaffold38G15006' => 'sas', 'SGA_v2.0_scaffold39G15264' => 'sas', 'SGA_v2.0_scaffold453G51880' => 'sas', 'SHI12696' => 'shi', 'SMO367G1096' => 'smo', 'Solyc01g068630.3' => 'sly', 'Solyc05g011880.3' => 'sly', 'Solyc06g076300.3' => 'sly', 'Solyc09g010940.4' => 'sly', 'Solyc09g075890.3' => 'sly', 'Sopen01g030560' => 'spe', 'Sopen05g006630' => 'spe', 'Sopen06g032720' => 'spe', 'Sopen09g005660' => 'spe', 'Sopen09g030690' => 'spe', 'Sp4g14540' => 'spa', 'Sp4g20030' => 'spa', 'Sp5g01320' => 'spa', 'Sp6g21170' => 'spa', 'Sp6g21180' => 'spa', 'Sp6g21190' => 'spa', 'Sp6g40220' => 'spa', 'TAR362G0122' => 'tar', 'TAR362G1338' => 'tar', 'TAR369G0590' => 'tar', 'TAR371G0824' => 'tar', 'TAR622G1429' => 'tar', 'TAR623G0734' => 'tar', 'TAR625G0441' => 'tar', 'TAR629G0976' => 'tar', 'TAR633G1195' => 'tar', 'TAR636G2660' => 'tar', 'THA.LOC104799440' => 'tha', 'THA.LOC104800966' => 'tha', 'THA.LOC104806559' => 'tha', 'THA.LOC104810765' => 'tha', 'THA.LOC104816266' => 'tha', 'THA.LOC104817419' => 'tha', 'THA.LOC104827021' => 'tha', 'Thecc.01G327400' => 'tca', 'Thecc.04G229200' => 'tca', 'Thecc.05G037400' => 'tca', 'Thecc.09G318600' => 'tca', 'Thecc.09G318700' => 'tca', 'Thhalv10006238m.g' => 'esa', 'Thhalv10014321m.g' => 'esa', 'Thhalv10014335m.g' => 'esa', 'Thhalv10015826m.g' => 'esa', 'Thhalv10017107m.g' => 'esa', 'Thhalv10017180m.g' => 'esa', 'Thhalv10029339m.g' => 'esa', 'TPR.G1699' => 'tpr', 'TPR.G23609' => 'tpr', 'TPR.G3081' => 'tpr', 'TPR.G40397' => 'tpr', 'TPR.G5522' => 'tpr', 'TPR.G5618' => 'tpr', 'TPR.G5626' => 'tpr', 'TWI09G1632' => 'twi', 'TWI23G1230' => 'twi', 'TWI53G1064' => 'twi', 'TWI59G0751' => 'twi', 'TWI74G0947' => 'twi', 'TWI77G0337' => 'twi', 'TWI79G1254' => 'twi', 'unitig_0.g2341' => 'ugi', 'unitig_26.g10006' => 'ugi', 'unitig_26.g10008' => 'ugi', 'unitig_26.g9192' => 'ugi', 'vmacro14547' => 'vma', 'vmacro15333' => 'vma', 'vmacro18743' => 'vma', 'vmacro20166' => 'vma', 'VMungo0331G0523' => 'vmu', 'VMungo0331G1202' => 'vmu', 'VMungo0720G1228' => 'vmu', 'VMungo0720G1514' => 'vmu', 'VMungo1080G0169' => 'vmu', 'VMungo1127G1475' => 'vmu', 'VMungo1383G1208' => 'vmu', 'VMungo1383G1698' => 'vmu', 'Zm00001eb012270' => 'zma', 'Zm00001eb054100' => 'zma', 'Zm00001eb063350' => 'zma', 'Zm00001eb328560' => 'zma', 'Zm00001eb342820' => 'zma', 'Zm00001eb362210' => 'zma', 'Zm00001eb397730' => 'zma', 'Zm00001eb399750' => 'zma' ), 'gf_id' => 'HOM05D000959', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000959' ), 'data_identifier' => 'HOM05D000959', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000959', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '622', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p07100' => 'bna', 'A03p11720' => 'bna', 'A05p08300' => 'bna', 'A05p13380' => 'bna', 'A09p54130' => 'bna', 'A10p16690' => 'bna', 'A10p16700' => 'bna', 'A10p33390' => 'bna', 'Aa31LG10G16020' => 'aar', 'Aa31LG1G11810' => 'aar', 'Aa31LG1G11830' => 'aar', 'Aa31LG1G22510' => 'aar', 'Aa31LG5G4890' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5793' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2310' => 'aag', 'Actinidia08499' => 'ach', 'Actinidia11262' => 'ach', 'Actinidia23926' => 'ach', 'Actinidia34420' => 'ach', 'Actinidia36970' => 'ach', 'Ah.02g111220' => 'amhyb', 'Ah.15g097750' => 'amhyb', 'AL4G27500' => 'aly', 'AL6G11470' => 'aly', 'AL8G35950' => 'aly', 'AL8G35960' => 'aly', 'AL8G35970' => 'aly', 'Aqoxy1G00912' => 'aox', 'Aqoxy2G02253' => 'aox', 'Aqoxy2G02411' => 'aox', 'Aqoxy5G00485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BZ66YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K8ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM4FUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6BF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HFV7XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25JBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0YNNV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MAKK6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P70IT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP2Z6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V61LZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YWP64R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3S9AI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7PGHH' => 'arhy', 'AT2G32150' => 'ath', 'AT3G62040' => 'ath', 'AT5G02230' => 'ath', 'AT5G59480' => 'ath', 'AT5G59490' => 'ath', 'ATR0332G060' => 'atr', 'ATR0559G190' => 'atr', 'ATR0693G294' => 'atr', 'Atru.chr3.3975' => 'acertr', 'Atru.chr3.3976' => 'acertr', 'Atru.chr3.3977' => 'acertr', 'Atru.chr4.2498' => 'acertr', 'Atru.chr5.838' => 'acertr', 'Atru.chr8.1990' => 'acertr', 'Atru.chr8.1991' => 'acertr', 'Atru.chr8.1992' => 'acertr', 'AUR62001759' => 'cqu', 'AUR62009545' => 'cqu', 'AUR62010474' => 'cqu', 'AUR62025820' => 'cqu', 'AUR62030422' => 'cqu', 'AUR62033605' => 'cqu', 'AUR62038615' => 'cqu', 'AUR62041347' => 'cqu', 'BcaB01g04574' => 'bca', 'BcaB02g09263' => 'bca', 'BcaB02g10453' => 'bca', 'BcaB05g22513' => 'bca', 'BcaB08g36253' => 'bca', 'BcaB08g36254' => 'bca', 'BcaC01g06519' => 'bca', 'BcaC02g11889' => 'bca', 'BcaC03g14010' => 'bca', 'BcaC03g18439' => 'bca', 'BcaC04g19765' => 'bca', 'BcaC09g48432' => 'bca', 'BcaNung07302' => 'bca', 'BolC2t06040H' => 'bol', 'BolC2t07346H' => 'bol', 'BolC3t13817H' => 'bol', 'BolC4t22625H' => 'bol', 'BolC4t23297H' => 'bol', 'BolC8t51278H' => 'bol', 'BolC9t58050H' => 'bol', 'BolC9t58051H' => 'bol', 'BolC9t60163H' => 'bol', 'BraA02t04712Z' => 'bra', 'BraA02t05791Z' => 'bra', 'BraA03t10483Z' => 'bra', 'BraA05t19795Z' => 'bra', 'BraA05t20276Z' => 'bra', 'BraA09t40827Z' => 'bra', 'BraA10t43750Z' => 'bra', 'BraA10t43751Z' => 'bra', 'BraA10t45370Z' => 'bra', 'C02p00400' => 'bna', 'C02p12460' => 'bna', 'C03p13680' => 'bna', 'C04p10270' => 'bna', 'C04p17500' => 'bna', 'C08p37010' => 'bna', 'C09p51880' => 'bna', 'C09p51890' => 'bna', 'C09p74300' => 'bna', 'CAN.G179.26' => 'can', 'CAN.G3384.1' => 'can', 'CAN.G394.68' => 'can', 'CAN.G907.13' => 'can', 'CANSAT11G0012' => 'cansat', 'CANSAT25G1586' => 'cansat', 'CANSAT35G0735' => 'cansat', 'CANSAT54G0556' => 'cansat', 'CANSAT64G0356' => 'cansat', 'CANSAT78G2042' => 'cansat', 'CARHR125920' => 'chi', 'CARHR131910' => 'chi', 'CARHR172390' => 'chi', 'CARHR211140' => 'chi', 'CARHR285850' => 'chi', 'CARHR285860' => 'chi', 'Carub.0004s1347' => 'cru', 'Carub.0004s1960' => 'cru', 'Carub.0005s2880' => 'cru', 'Carub.0006s0107' => 'cru', 'Carub.0008s2015' => 'cru', 'Carub.0008s2016' => 'cru', 'Carub.0008s2017' => 'cru', 'Ca_01315_v3' => 'car', 'Ca_05063_v3' => 'car', 'Ca_10231_v3' => 'car', 'Ca_10913_v3' => 'car', 'Ca_19156_v3' => 'car', 'Ca_23644_v3' => 'car', 'Ca_26735_v3' => 'car', 'Cc01_g13130' => 'ccan', 'Cc02_g21690' => 'ccan', 'Cc03_g03600' => 'ccan', 'Cc06_g02510' => 'ccan', 'CDE02G1265' => 'cde', 'CDE05G0415' => 'cde', 'CDE08G1082' => 'cde', 'Cfa005780' => 'cfa', 'Cfa011522' => 'cfa', 'Cfa011523' => 'cfa', 'Cfa015627' => 'cfa', 'Cfa017359' => 'cfa', 'Ciclev10005687m.g' => 'ccl', 'Ciclev10012173m.g' => 'ccl', 'Ciclev10021621m.g' => 'ccl', 'Ciclev10028968m.g' => 'ccl', 'Ciclev10029907m.g' => 'ccl', 'CiPaw.01G164800' => 'cil', 'CiPaw.07G083700' => 'cil', 'CiPaw.07G127000' => 'cil', 'CiPaw.07G136900' => 'cil', 'CiPaw.08G081700' => 'cil', 'CiPaw.09G194600' => 'cil', 'CiPaw.10G146500' => 'cil', 'CiPaw.13G091500' => 'cil', 'CiPaw.13G091600' => 'cil', 'ClCG00G003390' => 'cla', 'ClCG01G007220' => 'cla', 'ClCG03G001370' => 'cla', 'ClCG04G008100' => 'cla', 'ClCG06G006110' => 'cla', 'ClCG06G006130' => 'cla', 'ClCG10G021210' => 'cla', 'COL.COLO4_07648' => 'col', 'COL.COLO4_07650' => 'col', 'COL.COLO4_07651' => 'col', 'COL.COLO4_14780' => 'col', 'COL.COLO4_18546' => 'col', 'COL.COLO4_18547' => 'col', 'COL.COLO4_23103' => 'col', 'COL.COLO4_30419' => 'col', 'COL.COLO4_34232' => 'col', 'Cpa.g.sc169.20' => 'cpa', 'Cpa.g.sc57.45' => 'cpa', 'Cpa.g.sc58.124' => 'cpa', 'Cpa.g.sc58.125' => 'cpa', 'Cpa.g.sc81.118' => 'cpa', 'Cpa.g.sc81.119' => 'cpa', 'Cre12.g524700' => 'cre', 'CsaV3_1G034430' => 'csa', 'CsaV3_1G034440' => 'csa', 'CsaV3_1G034450' => 'csa', 'CsaV3_3G034830' => 'csa', 'CsaV3_4G025090' => 'csa', 'CsaV3_5G018660' => 'csa', 'CsaV3_6G038160' => 'csa', 'CSS0003447' => 'camsi', 'CSS0017840' => 'camsi', 'CSS0019260' => 'camsi', 'CSS0040375' => 'camsi', 'CSS0042533' => 'camsi', 'DCAR_005960' => 'dca', 'DCAR_012104' => 'dca', 'DCAR_012105' => 'dca', 'DCAR_012293' => 'dca', 'DCAR_015632' => 'dca', 'DCAR_024602' => 'dca', 'DCAR_028752' => 'dca', 'Dinv06261' => 'din', 'Dinv13982' => 'din', 'Dinv17029' => 'din', 'Dinv18463' => 'din', 'Dinv33181' => 'din', 'Dinv35585' => 'din', 'Dinv37161' => 'din', 'Dinv42977' => 'din', 'Dinv43122' => 'din', 'Dinv44517' => 'din', 'Duzib093G0256' => 'dzi', 'Duzib106G1254' => 'dzi', 'Duzib128G1789' => 'dzi', 'Duzib133G0633' => 'dzi', 'Duzib138G0510' => 'dzi', 'Duzib150G1084' => 'dzi', 'Duzib168G0488' => 'dzi', 'Duzib168G1523' => 'dzi', 'Duzib170G0133' => 'dzi', 'ECA234G1433' => 'eca', 'ECA236G1432' => 'eca', 'ECA236G2256' => 'eca', 'ECA236G2365' => 'eca', 'ECA236G4830' => 'eca', 'ECA248G1505' => 'eca', 'EL10Ac3g06431' => 'bvu', 'EL10Ac5g12577' => 'bvu', 'EL10Ac6g13533' => 'bvu', 'EL10Ac7g16045' => 'bvu', 'Eucgr.A01281' => 'egr', 'Eucgr.B02326' => 'egr', 'Eucgr.H03532' => 'egr', 'Eucgr.K00553' => 'egr', 'Eucgr.K03116' => 'egr', 'FAN02G3963' => 'fan', 'FAN05G0438' => 'fan', 'FAN09G2434' => 'fan', 'FAN12G3984' => 'fan', 'FAN14G0798' => 'fan', 'FAN17G0652' => 'fan', 'FAN19G1988' => 'fan', 'FAN22G0632' => 'fan', 'FAN23G0387' => 'fan', 'FAN26G1323' => 'fan', 'FAN28G0666' => 'fan', 'FvH4_1g26080' => 'fve', 'FvH4_3g36780' => 'fve', 'FvH4_4g15270' => 'fve', 'FvH4_6g13490' => 'fve', 'Glyma.01G098700' => 'gma', 'Glyma.03G065900' => 'gma', 'Glyma.03G073754' => 'gma', 'Glyma.03G073758' => 'gma', 'Glyma.03G083200' => 'gma', 'Glyma.03G225500' => 'gma', 'Glyma.05G037766' => 'gma', 'Glyma.07G133500' => 'gma', 'Glyma.10G139400' => 'gma', 'Glyma.10G248900' => 'gma', 'Glyma.11G137800' => 'gma', 'Glyma.12G061300' => 'gma', 'Glyma.13G337900' => 'gma', 'Glyma.15G036600' => 'gma', 'Glyma.18G182800' => 'gma', 'Glyma.19G222500' => 'gma', 'Glyma.20G144800' => 'gma', 'Gohir.A01G222000' => 'ghi', 'Gohir.A03G044000' => 'ghi', 'Gohir.A03G044100' => 'ghi', 'Gohir.A04G083100' => 'ghi', 'Gohir.A07G127200' => 'ghi', 'Gohir.A07G132400' => 'ghi', 'Gohir.A08G000700' => 'ghi', 'Gohir.A11G327300' => 'ghi', 'Gohir.D01G211500' => 'ghi', 'Gohir.D03G123400' => 'ghi', 'Gohir.D03G123500' => 'ghi', 'Gohir.D04G121800' => 'ghi', 'Gohir.D07G131500' => 'ghi', 'Gohir.D07G136600' => 'ghi', 'Gohir.D08G011600' => 'ghi', 'Gohir.D11G346200' => 'ghi', 'Gorai.001G142800' => 'gra', 'Gorai.001G148700' => 'gra', 'Gorai.002G257300' => 'gra', 'Gorai.003G130000' => 'gra', 'Gorai.003G130100' => 'gra', 'Gorai.004G005300' => 'gra', 'Gorai.007G376500' => 'gra', 'Gorai.012G104700' => 'gra', 'GSVIVG01017946001' => 'vvi', 'GSVIVG01024928001' => 'vvi', 'GSVIVG01028227001' => 'vvi', 'GSVIVG01034151001' => 'vvi', 'HanXRQChr05g0135031' => 'han', 'HanXRQChr05g0135041' => 'han', 'HanXRQChr05g0140021' => 'han', 'HanXRQChr06g0178981' => 'han', 'HanXRQChr07g0188251' => 'han', 'HanXRQChr08g0235311' => 'han', 'HanXRQChr09g0271011' => 'han', 'HanXRQChr10g0293321' => 'han', 'HanXRQChr13g0388171' => 'han', 'Haze_00916' => 'cav', 'Haze_05063' => 'cav', 'Haze_20814' => 'cav', 'Haze_24128' => 'cav', 'Hma1.2p1_0745F.1_g212010' => 'hma', 'Hma1.2p1_0757F.1_g213260' => 'hma', 'Hma1.2p1_0936F.1_g238840' => 'hma', 'Hma1.2p1_1735F.1_g299890' => 'hma', 'Hma1.2p1_1861F.1_g305685' => 'hma', 'HPP92_003397' => 'vpl', 'HPP92_012597' => 'vpl', 'HPP92_015520' => 'vpl', 'HPP92_015539' => 'vpl', 'HPP92_020373' => 'vpl', 'Hund04938' => 'sun', 'Hund10677' => 'sun', 'Hund11033' => 'sun', 'Hund12155' => 'sun', 'Lalb_Chr01g0022551' => 'lal', 'Lalb_Chr03g0042341' => 'lal', 'Lalb_Chr07g0192931' => 'lal', 'Lalb_Chr12g0209551' => 'lal', 'Lalb_Chr19g0125251' => 'lal', 'Lalb_Chr19g0137891' => 'lal', 'Lalb_Chr21g0304641' => 'lal', 'Lalb_Chr21g0309881' => 'lal', 'Lj1A5T12' => 'lonja', 'Lj1C148G10' => 'lonja', 'Lj2A93T83' => 'lonja', 'Lj3A738G68' => 'lonja', 'Lj3C966T1' => 'lonja', 'Lj3g0018958' => 'lja', 'Lj3g0021831' => 'lja', 'Lj3g0025443' => 'lja', 'Lj4g0026809' => 'lja', 'Lj5g0012558' => 'lja', 'Lj5g0021586' => 'lja', 'Lsat_1_v5_gn_5_156840' => 'lsa', 'Lsat_1_v5_gn_8_73460' => 'lsa', 'Lsat_1_v5_gn_8_73481' => 'lsa', 'Lsat_1_v5_gn_9_31601' => 'lsa', 'Lsat_1_v5_gn_9_77320' => 'lsa', 'Manes.01G171300' => 'mes', 'Manes.01G171400' => 'mes', 'Manes.01G236100' => 'mes', 'Manes.02G130500' => 'mes', 'Manes.02G130600' => 'mes', 'Manes.03G180200' => 'mes', 'Manes.05G007000' => 'mes', 'Manes.08G084400' => 'mes', 'Manes.09G092600' => 'mes', 'Manes.15G027900' => 'mes', 'MBI04_g40948_MAGBIO' => 'mbi', 'MBI14_g12123_MAGBIO' => 'mbi', 'MBI18_g28915_MAGBIO' => 'mbi', 'MCO09G053' => 'mco', 'MCO11G782' => 'mco', 'MCO15G215' => 'mco', 'MD03G1088500' => 'mdo', 'MD03G1088600' => 'mdo', 'MD04G1130800' => 'mdo', 'MD09G1291700' => 'mdo', 'MD11G1097500' => 'mdo', 'MD11G1097600' => 'mdo', 'MD12G1143900' => 'mdo', 'MD13G1191400' => 'mdo', 'MD16G1191500' => 'mdo', 'Medtr1g085570' => 'mtr', 'Medtr1g104610' => 'mtr', 'Medtr2g097520' => 'mtr', 'Medtr4g021800' => 'mtr', 'Medtr4g021825' => 'mtr', 'Medtr4g064270' => 'mtr', 'Medtr4g064380' => 'mtr', 'Medtr7g062150' => 'mtr', 'MELO3C003138.2' => 'cme', 'MELO3C005187.2' => 'cme', 'MELO3C009252.2' => 'cme', 'MELO3C014481.2' => 'cme', 'MELO3C020616.2' => 'cme', 'MELO3C020617.2' => 'cme', 'MELO3C020618.2' => 'cme', 'Migut.G00328' => 'egut', 'Migut.J00320' => 'egut', 'Migut.L01000' => 'egut', 'Migut.L01953' => 'egut', 'MSTRG.10253' => 'ama', 'MSTRG.19077' => 'ama', 'MSTRG.26780' => 'ama', 'MSTRG.4023' => 'ama', 'MSTRG.5655' => 'ama', 'MSTRG.9992' => 'ama', 'Nitab4.5_0000043g0310' => 'nta', 'Nitab4.5_0000463g0080' => 'nta', 'Nitab4.5_0000705g0170' => 'nta', 'Nitab4.5_0001326g0060' => 'nta', 'Nitab4.5_0001628g0030' => 'nta', 'Nitab4.5_0002103g0110' => 'nta', 'Nitab4.5_0002946g0030' => 'nta', 'Nitab4.5_0004639g0030' => 'nta', 'Nn2g11149' => 'nnu', 'Nn2g13389' => 'nnu', 'Nn4g25326' => 'nnu', 'Nn4g26290' => 'nnu', 'Nn5g29865' => 'nnu', 'Oeu004163.1' => 'oeu', 'Oeu006901.1' => 'oeu', 'Oeu010096.1' => 'oeu', 'Oeu024340.1' => 'oeu', 'Oeu048369.1' => 'oeu', 'Os01g0973000' => 'osa', 'Os03g0273800' => 'osa', 'Os03g0701200' => 'osa', 'Os03g0834050' => 'osa', 'Os07g0634400' => 'osa', 'Peaxi162Scf00092g01414' => 'pax', 'Peaxi162Scf00165g00818' => 'pax', 'Peaxi162Scf00309g00516' => 'pax', 'Peaxi162Scf00774g00218' => 'pax', 'PGR004G1824' => 'pgr', 'PGR004G2606' => 'pgr', 'PGR031G2716' => 'pgr', 'PGR102G2460' => 'pgr', 'PGR142G2599' => 'pgr', 'PGSC0003DMG400000843' => 'stu', 'PGSC0003DMG400008829' => 'stu', 'PGSC0003DMG400030418' => 'stu', 'PGSC0003DMG400031834' => 'stu', 'PGSC0003DMG401028300' => 'stu', 'PGSC0003DMG402028300' => 'stu', 'Phvul.001G219300' => 'pvu', 'Phvul.007G056000' => 'pvu', 'Phvul.007G208000' => 'pvu', 'Phvul.008G119500' => 'pvu', 'Phvul.010G011200' => 'pvu', 'Phvul.010G014800' => 'pvu', 'Phvul.011G062900' => 'pvu', 'Phvul.L007043' => 'pvu', 'Potri.001G242300' => 'ptr', 'Potri.002G185300' => 'ptr', 'Potri.006G086900' => 'ptr', 'Potri.008G151700' => 'ptr', 'Potri.009G033500' => 'ptr', 'Potri.010G089300' => 'ptr', 'Potri.014G110800' => 'ptr', 'Pp3c27_8130' => 'ppa', 'Pp3c6_27410' => 'ppa', 'PRCOL_00001659' => 'pco', 'PRCOL_00001927' => 'pco', 'PRCOL_00003649' => 'pco', 'Prupe.1G011600' => 'ppe', 'Prupe.3G000800' => 'ppe', 'Prupe.3G001100' => 'ppe', 'Prupe.6G072700' => 'ppe', 'Prupe.6G072800' => 'ppe', 'Prupe.6G257300' => 'ppe', 'Prupe.8G033000' => 'ppe', 'Psat0s2633g0080' => 'psa', 'Psat0s3396g0080' => 'psa', 'Psat0s3396g0200' => 'psa', 'Psat3g139080' => 'psa', 'Psat5g285080' => 'psa', 'Psat6g157760' => 'psa', 'Psat6g208440' => 'psa', 'Psat7g215320' => 'psa', 'Psat7g215400' => 'psa', 'Psat7g235600' => 'psa', 'Psat7g235760' => 'psa', 'PSO063G4603' => 'pso', 'PSO210G0182' => 'pso', 'PSO210G0196' => 'pso', 'PSO339G0394' => 'pso', 'PSO339G4127' => 'pso', 'PSO513G0064' => 'pso', 'PSO761G0079' => 'pso', 'QL01p031003' => 'qlo', 'QL01p031078' => 'qlo', 'QL06p003004' => 'qlo', 'QL07p048731' => 'qlo', 'QL09p037427' => 'qlo', 'RcHm_v2.0_Chr3g0466361' => 'rch', 'RcHm_v2.0_Chr3g0485571' => 'rch', 'RcHm_v2.0_Chr4g0416551' => 'rch', 'RcHm_v2.0_Chr5g0065831' => 'rch', 'Rhsim01G0230500' => 'rsi', 'Rhsim05G0194000' => 'rsi', 'Rhsim08G0250400' => 'rsi', 'Sabra02G0131000' => 'sbr', 'Sabra06G0066300' => 'sbr', 'Sabra08G0115500' => 'sbr', 'Sabra09G0023900' => 'sbr', 'Sabra10G0054000' => 'sbr', 'Sabra14G0081500' => 'sbr', 'Sabra16G0147100' => 'sbr', 'SalBow2G2957' => 'sbo', 'SalBow4G3320' => 'sbo', 'SalBow8G1894' => 'sbo', 'Sc07g0007950' => 'sci', 'Sc12g0001360' => 'sci', 'Sc13g0004330' => 'sci', 'Sc20g0005010' => 'sci', 'Sed0000361' => 'sed', 'Sed0001706' => 'sed', 'Sed0002422' => 'sed', 'Sed0004029' => 'sed', 'Sed0004602' => 'sed', 'Sed0004943' => 'sed', 'Sed0008646' => 'sed', 'Sed0023313' => 'sed', 'Sed0024843' => 'sed', 'SEGI_00081' => 'sgi', 'SEGI_00947' => 'sgi', 'SEGI_04046' => 'sgi', 'SEGI_06880' => 'sgi', 'SEGI_09736' => 'sgi', 'SEGI_12741' => 'sgi', 'SEGI_14530' => 'sgi', 'SEGI_20705' => 'sgi', 'SEGI_26088' => 'sgi', 'SEGI_28323' => 'sgi', 'SEGI_33343' => 'sgi', 'SGA_v2.0_scaffold126G33775' => 'sas', 'SGA_v2.0_scaffold2G01337' => 'sas', 'SGA_v2.0_scaffold38G15006' => 'sas', 'SGA_v2.0_scaffold39G15264' => 'sas', 'SGA_v2.0_scaffold453G51880' => 'sas', 'SHI12696' => 'shi', 'SMO367G1096' => 'smo', 'Solyc01g068630.3' => 'sly', 'Solyc05g011880.3' => 'sly', 'Solyc06g076300.3' => 'sly', 'Solyc09g010940.4' => 'sly', 'Solyc09g075890.3' => 'sly', 'Sopen01g030560' => 'spe', 'Sopen05g006630' => 'spe', 'Sopen06g032720' => 'spe', 'Sopen09g005660' => 'spe', 'Sopen09g030690' => 'spe', 'Sp4g14540' => 'spa', 'Sp4g20030' => 'spa', 'Sp5g01320' => 'spa', 'Sp6g21170' => 'spa', 'Sp6g21180' => 'spa', 'Sp6g21190' => 'spa', 'Sp6g40220' => 'spa', 'TAR362G0122' => 'tar', 'TAR362G1338' => 'tar', 'TAR369G0590' => 'tar', 'TAR371G0824' => 'tar', 'TAR622G1429' => 'tar', 'TAR623G0734' => 'tar', 'TAR625G0441' => 'tar', 'TAR629G0976' => 'tar', 'TAR633G1195' => 'tar', 'TAR636G2660' => 'tar', 'THA.LOC104799440' => 'tha', 'THA.LOC104800966' => 'tha', 'THA.LOC104806559' => 'tha', 'THA.LOC104810765' => 'tha', 'THA.LOC104816266' => 'tha', 'THA.LOC104817419' => 'tha', 'THA.LOC104827021' => 'tha', 'Thecc.01G327400' => 'tca', 'Thecc.04G229200' => 'tca', 'Thecc.05G037400' => 'tca', 'Thecc.09G318600' => 'tca', 'Thecc.09G318700' => 'tca', 'Thhalv10006238m.g' => 'esa', 'Thhalv10014321m.g' => 'esa', 'Thhalv10014335m.g' => 'esa', 'Thhalv10015826m.g' => 'esa', 'Thhalv10017107m.g' => 'esa', 'Thhalv10017180m.g' => 'esa', 'Thhalv10029339m.g' => 'esa', 'TPR.G1699' => 'tpr', 'TPR.G23609' => 'tpr', 'TPR.G3081' => 'tpr', 'TPR.G40397' => 'tpr', 'TPR.G5522' => 'tpr', 'TPR.G5618' => 'tpr', 'TPR.G5626' => 'tpr', 'TWI09G1632' => 'twi', 'TWI23G1230' => 'twi', 'TWI53G1064' => 'twi', 'TWI59G0751' => 'twi', 'TWI74G0947' => 'twi', 'TWI77G0337' => 'twi', 'TWI79G1254' => 'twi', 'unitig_0.g2341' => 'ugi', 'unitig_26.g10006' => 'ugi', 'unitig_26.g10008' => 'ugi', 'unitig_26.g9192' => 'ugi', 'vmacro14547' => 'vma', 'vmacro15333' => 'vma', 'vmacro18743' => 'vma', 'vmacro20166' => 'vma', 'VMungo0331G0523' => 'vmu', 'VMungo0331G1202' => 'vmu', 'VMungo0720G1228' => 'vmu', 'VMungo0720G1514' => 'vmu', 'VMungo1080G0169' => 'vmu', 'VMungo1127G1475' => 'vmu', 'VMungo1383G1208' => 'vmu', 'VMungo1383G1698' => 'vmu', 'Zm00001eb012270' => 'zma', 'Zm00001eb054100' => 'zma', 'Zm00001eb063350' => 'zma', 'Zm00001eb328560' => 'zma', 'Zm00001eb342820' => 'zma', 'Zm00001eb362210' => 'zma', 'Zm00001eb397730' => 'zma', 'Zm00001eb399750' => 'zma' ) $gf_id = 'HOM05D000959' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000959' ) $data_identifier = 'HOM05D000959' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 5, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 5, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 10, 'mbi' => (int) 3, 'mco' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 2, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 3, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 11, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399750' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000959', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '622', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p07100' => 'bna', 'A03p11720' => 'bna', 'A05p08300' => 'bna', 'A05p13380' => 'bna', 'A09p54130' => 'bna', 'A10p16690' => 'bna', 'A10p16700' => 'bna', 'A10p33390' => 'bna', 'Aa31LG10G16020' => 'aar', 'Aa31LG1G11810' => 'aar', 'Aa31LG1G11830' => 'aar', 'Aa31LG1G22510' => 'aar', 'Aa31LG5G4890' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5793' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2310' => 'aag', 'Actinidia08499' => 'ach', 'Actinidia11262' => 'ach', 'Actinidia23926' => 'ach', 'Actinidia34420' => 'ach', 'Actinidia36970' => 'ach', 'Ah.02g111220' => 'amhyb', 'Ah.15g097750' => 'amhyb', 'AL4G27500' => 'aly', 'AL6G11470' => 'aly', 'AL8G35950' => 'aly', 'AL8G35960' => 'aly', 'AL8G35970' => 'aly', 'Aqoxy1G00912' => 'aox', 'Aqoxy2G02253' => 'aox', 'Aqoxy2G02411' => 'aox', 'Aqoxy5G00485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BZ66YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K8ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM4FUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6BF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HFV7XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25JBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0YNNV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MAKK6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P70IT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP2Z6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V61LZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YWP64R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3S9AI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7PGHH' => 'arhy', 'AT2G32150' => 'ath', 'AT3G62040' => 'ath', 'AT5G02230' => 'ath', 'AT5G59480' => 'ath', 'AT5G59490' => 'ath', 'ATR0332G060' => 'atr', 'ATR0559G190' => 'atr', 'ATR0693G294' => 'atr', 'Atru.chr3.3975' => 'acertr', 'Atru.chr3.3976' => 'acertr', 'Atru.chr3.3977' => 'acertr', 'Atru.chr4.2498' => 'acertr', 'Atru.chr5.838' => 'acertr', 'Atru.chr8.1990' => 'acertr', 'Atru.chr8.1991' => 'acertr', 'Atru.chr8.1992' => 'acertr', 'AUR62001759' => 'cqu', 'AUR62009545' => 'cqu', 'AUR62010474' => 'cqu', 'AUR62025820' => 'cqu', 'AUR62030422' => 'cqu', 'AUR62033605' => 'cqu', 'AUR62038615' => 'cqu', 'AUR62041347' => 'cqu', 'BcaB01g04574' => 'bca', 'BcaB02g09263' => 'bca', 'BcaB02g10453' => 'bca', 'BcaB05g22513' => 'bca', 'BcaB08g36253' => 'bca', 'BcaB08g36254' => 'bca', 'BcaC01g06519' => 'bca', 'BcaC02g11889' => 'bca', 'BcaC03g14010' => 'bca', 'BcaC03g18439' => 'bca', 'BcaC04g19765' => 'bca', 'BcaC09g48432' => 'bca', 'BcaNung07302' => 'bca', 'BolC2t06040H' => 'bol', 'BolC2t07346H' => 'bol', 'BolC3t13817H' => 'bol', 'BolC4t22625H' => 'bol', 'BolC4t23297H' => 'bol', 'BolC8t51278H' => 'bol', 'BolC9t58050H' => 'bol', 'BolC9t58051H' => 'bol', 'BolC9t60163H' => 'bol', 'BraA02t04712Z' => 'bra', 'BraA02t05791Z' => 'bra', 'BraA03t10483Z' => 'bra', 'BraA05t19795Z' => 'bra', 'BraA05t20276Z' => 'bra', 'BraA09t40827Z' => 'bra', 'BraA10t43750Z' => 'bra', 'BraA10t43751Z' => 'bra', 'BraA10t45370Z' => 'bra', 'C02p00400' => 'bna', 'C02p12460' => 'bna', 'C03p13680' => 'bna', 'C04p10270' => 'bna', 'C04p17500' => 'bna', 'C08p37010' => 'bna', 'C09p51880' => 'bna', 'C09p51890' => 'bna', 'C09p74300' => 'bna', 'CAN.G179.26' => 'can', 'CAN.G3384.1' => 'can', 'CAN.G394.68' => 'can', 'CAN.G907.13' => 'can', 'CANSAT11G0012' => 'cansat', 'CANSAT25G1586' => 'cansat', 'CANSAT35G0735' => 'cansat', 'CANSAT54G0556' => 'cansat', 'CANSAT64G0356' => 'cansat', 'CANSAT78G2042' => 'cansat', 'CARHR125920' => 'chi', 'CARHR131910' => 'chi', 'CARHR172390' => 'chi', 'CARHR211140' => 'chi', 'CARHR285850' => 'chi', 'CARHR285860' => 'chi', 'Carub.0004s1347' => 'cru', 'Carub.0004s1960' => 'cru', 'Carub.0005s2880' => 'cru', 'Carub.0006s0107' => 'cru', 'Carub.0008s2015' => 'cru', 'Carub.0008s2016' => 'cru', 'Carub.0008s2017' => 'cru', 'Ca_01315_v3' => 'car', 'Ca_05063_v3' => 'car', 'Ca_10231_v3' => 'car', 'Ca_10913_v3' => 'car', 'Ca_19156_v3' => 'car', 'Ca_23644_v3' => 'car', 'Ca_26735_v3' => 'car', 'Cc01_g13130' => 'ccan', 'Cc02_g21690' => 'ccan', 'Cc03_g03600' => 'ccan', 'Cc06_g02510' => 'ccan', 'CDE02G1265' => 'cde', 'CDE05G0415' => 'cde', 'CDE08G1082' => 'cde', 'Cfa005780' => 'cfa', 'Cfa011522' => 'cfa', 'Cfa011523' => 'cfa', 'Cfa015627' => 'cfa', 'Cfa017359' => 'cfa', 'Ciclev10005687m.g' => 'ccl', 'Ciclev10012173m.g' => 'ccl', 'Ciclev10021621m.g' => 'ccl', 'Ciclev10028968m.g' => 'ccl', 'Ciclev10029907m.g' => 'ccl', 'CiPaw.01G164800' => 'cil', 'CiPaw.07G083700' => 'cil', 'CiPaw.07G127000' => 'cil', 'CiPaw.07G136900' => 'cil', 'CiPaw.08G081700' => 'cil', 'CiPaw.09G194600' => 'cil', 'CiPaw.10G146500' => 'cil', 'CiPaw.13G091500' => 'cil', 'CiPaw.13G091600' => 'cil', 'ClCG00G003390' => 'cla', 'ClCG01G007220' => 'cla', 'ClCG03G001370' => 'cla', 'ClCG04G008100' => 'cla', 'ClCG06G006110' => 'cla', 'ClCG06G006130' => 'cla', 'ClCG10G021210' => 'cla', 'COL.COLO4_07648' => 'col', 'COL.COLO4_07650' => 'col', 'COL.COLO4_07651' => 'col', 'COL.COLO4_14780' => 'col', 'COL.COLO4_18546' => 'col', 'COL.COLO4_18547' => 'col', 'COL.COLO4_23103' => 'col', 'COL.COLO4_30419' => 'col', 'COL.COLO4_34232' => 'col', 'Cpa.g.sc169.20' => 'cpa', 'Cpa.g.sc57.45' => 'cpa', 'Cpa.g.sc58.124' => 'cpa', 'Cpa.g.sc58.125' => 'cpa', 'Cpa.g.sc81.118' => 'cpa', 'Cpa.g.sc81.119' => 'cpa', 'Cre12.g524700' => 'cre', 'CsaV3_1G034430' => 'csa', 'CsaV3_1G034440' => 'csa', 'CsaV3_1G034450' => 'csa', 'CsaV3_3G034830' => 'csa', 'CsaV3_4G025090' => 'csa', 'CsaV3_5G018660' => 'csa', 'CsaV3_6G038160' => 'csa', 'CSS0003447' => 'camsi', 'CSS0017840' => 'camsi', 'CSS0019260' => 'camsi', 'CSS0040375' => 'camsi', 'CSS0042533' => 'camsi', 'DCAR_005960' => 'dca', 'DCAR_012104' => 'dca', 'DCAR_012105' => 'dca', 'DCAR_012293' => 'dca', 'DCAR_015632' => 'dca', 'DCAR_024602' => 'dca', 'DCAR_028752' => 'dca', 'Dinv06261' => 'din', 'Dinv13982' => 'din', 'Dinv17029' => 'din', 'Dinv18463' => 'din', 'Dinv33181' => 'din', 'Dinv35585' => 'din', 'Dinv37161' => 'din', 'Dinv42977' => 'din', 'Dinv43122' => 'din', 'Dinv44517' => 'din', 'Duzib093G0256' => 'dzi', 'Duzib106G1254' => 'dzi', 'Duzib128G1789' => 'dzi', 'Duzib133G0633' => 'dzi', 'Duzib138G0510' => 'dzi', 'Duzib150G1084' => 'dzi', 'Duzib168G0488' => 'dzi', 'Duzib168G1523' => 'dzi', 'Duzib170G0133' => 'dzi', 'ECA234G1433' => 'eca', 'ECA236G1432' => 'eca', 'ECA236G2256' => 'eca', 'ECA236G2365' => 'eca', 'ECA236G4830' => 'eca', 'ECA248G1505' => 'eca', 'EL10Ac3g06431' => 'bvu', 'EL10Ac5g12577' => 'bvu', 'EL10Ac6g13533' => 'bvu', 'EL10Ac7g16045' => 'bvu', 'Eucgr.A01281' => 'egr', 'Eucgr.B02326' => 'egr', 'Eucgr.H03532' => 'egr', 'Eucgr.K00553' => 'egr', 'Eucgr.K03116' => 'egr', 'FAN02G3963' => 'fan', 'FAN05G0438' => 'fan', 'FAN09G2434' => 'fan', 'FAN12G3984' => 'fan', 'FAN14G0798' => 'fan', 'FAN17G0652' => 'fan', 'FAN19G1988' => 'fan', 'FAN22G0632' => 'fan', 'FAN23G0387' => 'fan', 'FAN26G1323' => 'fan', 'FAN28G0666' => 'fan', 'FvH4_1g26080' => 'fve', 'FvH4_3g36780' => 'fve', 'FvH4_4g15270' => 'fve', 'FvH4_6g13490' => 'fve', 'Glyma.01G098700' => 'gma', 'Glyma.03G065900' => 'gma', 'Glyma.03G073754' => 'gma', 'Glyma.03G073758' => 'gma', 'Glyma.03G083200' => 'gma', 'Glyma.03G225500' => 'gma', 'Glyma.05G037766' => 'gma', 'Glyma.07G133500' => 'gma', 'Glyma.10G139400' => 'gma', 'Glyma.10G248900' => 'gma', 'Glyma.11G137800' => 'gma', 'Glyma.12G061300' => 'gma', 'Glyma.13G337900' => 'gma', 'Glyma.15G036600' => 'gma', 'Glyma.18G182800' => 'gma', 'Glyma.19G222500' => 'gma', 'Glyma.20G144800' => 'gma', 'Gohir.A01G222000' => 'ghi', 'Gohir.A03G044000' => 'ghi', 'Gohir.A03G044100' => 'ghi', 'Gohir.A04G083100' => 'ghi', 'Gohir.A07G127200' => 'ghi', 'Gohir.A07G132400' => 'ghi', 'Gohir.A08G000700' => 'ghi', 'Gohir.A11G327300' => 'ghi', 'Gohir.D01G211500' => 'ghi', 'Gohir.D03G123400' => 'ghi', 'Gohir.D03G123500' => 'ghi', 'Gohir.D04G121800' => 'ghi', 'Gohir.D07G131500' => 'ghi', 'Gohir.D07G136600' => 'ghi', 'Gohir.D08G011600' => 'ghi', 'Gohir.D11G346200' => 'ghi', 'Gorai.001G142800' => 'gra', 'Gorai.001G148700' => 'gra', 'Gorai.002G257300' => 'gra', 'Gorai.003G130000' => 'gra', 'Gorai.003G130100' => 'gra', 'Gorai.004G005300' => 'gra', 'Gorai.007G376500' => 'gra', 'Gorai.012G104700' => 'gra', 'GSVIVG01017946001' => 'vvi', 'GSVIVG01024928001' => 'vvi', 'GSVIVG01028227001' => 'vvi', 'GSVIVG01034151001' => 'vvi', 'HanXRQChr05g0135031' => 'han', 'HanXRQChr05g0135041' => 'han', 'HanXRQChr05g0140021' => 'han', 'HanXRQChr06g0178981' => 'han', 'HanXRQChr07g0188251' => 'han', 'HanXRQChr08g0235311' => 'han', 'HanXRQChr09g0271011' => 'han', 'HanXRQChr10g0293321' => 'han', 'HanXRQChr13g0388171' => 'han', 'Haze_00916' => 'cav', 'Haze_05063' => 'cav', 'Haze_20814' => 'cav', 'Haze_24128' => 'cav', 'Hma1.2p1_0745F.1_g212010' => 'hma', 'Hma1.2p1_0757F.1_g213260' => 'hma', 'Hma1.2p1_0936F.1_g238840' => 'hma', 'Hma1.2p1_1735F.1_g299890' => 'hma', 'Hma1.2p1_1861F.1_g305685' => 'hma', 'HPP92_003397' => 'vpl', 'HPP92_012597' => 'vpl', 'HPP92_015520' => 'vpl', 'HPP92_015539' => 'vpl', 'HPP92_020373' => 'vpl', 'Hund04938' => 'sun', 'Hund10677' => 'sun', 'Hund11033' => 'sun', 'Hund12155' => 'sun', 'Lalb_Chr01g0022551' => 'lal', 'Lalb_Chr03g0042341' => 'lal', 'Lalb_Chr07g0192931' => 'lal', 'Lalb_Chr12g0209551' => 'lal', 'Lalb_Chr19g0125251' => 'lal', 'Lalb_Chr19g0137891' => 'lal', 'Lalb_Chr21g0304641' => 'lal', 'Lalb_Chr21g0309881' => 'lal', 'Lj1A5T12' => 'lonja', 'Lj1C148G10' => 'lonja', 'Lj2A93T83' => 'lonja', 'Lj3A738G68' => 'lonja', 'Lj3C966T1' => 'lonja', 'Lj3g0018958' => 'lja', 'Lj3g0021831' => 'lja', 'Lj3g0025443' => 'lja', 'Lj4g0026809' => 'lja', 'Lj5g0012558' => 'lja', 'Lj5g0021586' => 'lja', 'Lsat_1_v5_gn_5_156840' => 'lsa', 'Lsat_1_v5_gn_8_73460' => 'lsa', 'Lsat_1_v5_gn_8_73481' => 'lsa', 'Lsat_1_v5_gn_9_31601' => 'lsa', 'Lsat_1_v5_gn_9_77320' => 'lsa', 'Manes.01G171300' => 'mes', 'Manes.01G171400' => 'mes', 'Manes.01G236100' => 'mes', 'Manes.02G130500' => 'mes', 'Manes.02G130600' => 'mes', 'Manes.03G180200' => 'mes', 'Manes.05G007000' => 'mes', 'Manes.08G084400' => 'mes', 'Manes.09G092600' => 'mes', 'Manes.15G027900' => 'mes', 'MBI04_g40948_MAGBIO' => 'mbi', 'MBI14_g12123_MAGBIO' => 'mbi', 'MBI18_g28915_MAGBIO' => 'mbi', 'MCO09G053' => 'mco', 'MCO11G782' => 'mco', 'MCO15G215' => 'mco', 'MD03G1088500' => 'mdo', 'MD03G1088600' => 'mdo', 'MD04G1130800' => 'mdo', 'MD09G1291700' => 'mdo', 'MD11G1097500' => 'mdo', 'MD11G1097600' => 'mdo', 'MD12G1143900' => 'mdo', 'MD13G1191400' => 'mdo', 'MD16G1191500' => 'mdo', 'Medtr1g085570' => 'mtr', 'Medtr1g104610' => 'mtr', 'Medtr2g097520' => 'mtr', 'Medtr4g021800' => 'mtr', 'Medtr4g021825' => 'mtr', 'Medtr4g064270' => 'mtr', 'Medtr4g064380' => 'mtr', 'Medtr7g062150' => 'mtr', 'MELO3C003138.2' => 'cme', 'MELO3C005187.2' => 'cme', 'MELO3C009252.2' => 'cme', 'MELO3C014481.2' => 'cme', 'MELO3C020616.2' => 'cme', 'MELO3C020617.2' => 'cme', 'MELO3C020618.2' => 'cme', 'Migut.G00328' => 'egut', 'Migut.J00320' => 'egut', 'Migut.L01000' => 'egut', 'Migut.L01953' => 'egut', 'MSTRG.10253' => 'ama', 'MSTRG.19077' => 'ama', 'MSTRG.26780' => 'ama', 'MSTRG.4023' => 'ama', 'MSTRG.5655' => 'ama', 'MSTRG.9992' => 'ama', 'Nitab4.5_0000043g0310' => 'nta', 'Nitab4.5_0000463g0080' => 'nta', 'Nitab4.5_0000705g0170' => 'nta', 'Nitab4.5_0001326g0060' => 'nta', 'Nitab4.5_0001628g0030' => 'nta', 'Nitab4.5_0002103g0110' => 'nta', 'Nitab4.5_0002946g0030' => 'nta', 'Nitab4.5_0004639g0030' => 'nta', 'Nn2g11149' => 'nnu', 'Nn2g13389' => 'nnu', 'Nn4g25326' => 'nnu', 'Nn4g26290' => 'nnu', 'Nn5g29865' => 'nnu', 'Oeu004163.1' => 'oeu', 'Oeu006901.1' => 'oeu', 'Oeu010096.1' => 'oeu', 'Oeu024340.1' => 'oeu', 'Oeu048369.1' => 'oeu', 'Os01g0973000' => 'osa', 'Os03g0273800' => 'osa', 'Os03g0701200' => 'osa', 'Os03g0834050' => 'osa', 'Os07g0634400' => 'osa', 'Peaxi162Scf00092g01414' => 'pax', 'Peaxi162Scf00165g00818' => 'pax', 'Peaxi162Scf00309g00516' => 'pax', 'Peaxi162Scf00774g00218' => 'pax', 'PGR004G1824' => 'pgr', 'PGR004G2606' => 'pgr', 'PGR031G2716' => 'pgr', 'PGR102G2460' => 'pgr', 'PGR142G2599' => 'pgr', 'PGSC0003DMG400000843' => 'stu', 'PGSC0003DMG400008829' => 'stu', 'PGSC0003DMG400030418' => 'stu', 'PGSC0003DMG400031834' => 'stu', 'PGSC0003DMG401028300' => 'stu', 'PGSC0003DMG402028300' => 'stu', 'Phvul.001G219300' => 'pvu', 'Phvul.007G056000' => 'pvu', 'Phvul.007G208000' => 'pvu', 'Phvul.008G119500' => 'pvu', 'Phvul.010G011200' => 'pvu', 'Phvul.010G014800' => 'pvu', 'Phvul.011G062900' => 'pvu', 'Phvul.L007043' => 'pvu', 'Potri.001G242300' => 'ptr', 'Potri.002G185300' => 'ptr', 'Potri.006G086900' => 'ptr', 'Potri.008G151700' => 'ptr', 'Potri.009G033500' => 'ptr', 'Potri.010G089300' => 'ptr', 'Potri.014G110800' => 'ptr', 'Pp3c27_8130' => 'ppa', 'Pp3c6_27410' => 'ppa', 'PRCOL_00001659' => 'pco', 'PRCOL_00001927' => 'pco', 'PRCOL_00003649' => 'pco', 'Prupe.1G011600' => 'ppe', 'Prupe.3G000800' => 'ppe', 'Prupe.3G001100' => 'ppe', 'Prupe.6G072700' => 'ppe', 'Prupe.6G072800' => 'ppe', 'Prupe.6G257300' => 'ppe', 'Prupe.8G033000' => 'ppe', 'Psat0s2633g0080' => 'psa', 'Psat0s3396g0080' => 'psa', 'Psat0s3396g0200' => 'psa', 'Psat3g139080' => 'psa', 'Psat5g285080' => 'psa', 'Psat6g157760' => 'psa', 'Psat6g208440' => 'psa', 'Psat7g215320' => 'psa', 'Psat7g215400' => 'psa', 'Psat7g235600' => 'psa', 'Psat7g235760' => 'psa', 'PSO063G4603' => 'pso', 'PSO210G0182' => 'pso', 'PSO210G0196' => 'pso', 'PSO339G0394' => 'pso', 'PSO339G4127' => 'pso', 'PSO513G0064' => 'pso', 'PSO761G0079' => 'pso', 'QL01p031003' => 'qlo', 'QL01p031078' => 'qlo', 'QL06p003004' => 'qlo', 'QL07p048731' => 'qlo', 'QL09p037427' => 'qlo', 'RcHm_v2.0_Chr3g0466361' => 'rch', 'RcHm_v2.0_Chr3g0485571' => 'rch', 'RcHm_v2.0_Chr4g0416551' => 'rch', 'RcHm_v2.0_Chr5g0065831' => 'rch', 'Rhsim01G0230500' => 'rsi', 'Rhsim05G0194000' => 'rsi', 'Rhsim08G0250400' => 'rsi', 'Sabra02G0131000' => 'sbr', 'Sabra06G0066300' => 'sbr', 'Sabra08G0115500' => 'sbr', 'Sabra09G0023900' => 'sbr', 'Sabra10G0054000' => 'sbr', 'Sabra14G0081500' => 'sbr', 'Sabra16G0147100' => 'sbr', 'SalBow2G2957' => 'sbo', 'SalBow4G3320' => 'sbo', 'SalBow8G1894' => 'sbo', 'Sc07g0007950' => 'sci', 'Sc12g0001360' => 'sci', 'Sc13g0004330' => 'sci', 'Sc20g0005010' => 'sci', 'Sed0000361' => 'sed', 'Sed0001706' => 'sed', 'Sed0002422' => 'sed', 'Sed0004029' => 'sed', 'Sed0004602' => 'sed', 'Sed0004943' => 'sed', 'Sed0008646' => 'sed', 'Sed0023313' => 'sed', 'Sed0024843' => 'sed', 'SEGI_00081' => 'sgi', 'SEGI_00947' => 'sgi', 'SEGI_04046' => 'sgi', 'SEGI_06880' => 'sgi', 'SEGI_09736' => 'sgi', 'SEGI_12741' => 'sgi', 'SEGI_14530' => 'sgi', 'SEGI_20705' => 'sgi', 'SEGI_26088' => 'sgi', 'SEGI_28323' => 'sgi', 'SEGI_33343' => 'sgi', 'SGA_v2.0_scaffold126G33775' => 'sas', 'SGA_v2.0_scaffold2G01337' => 'sas', 'SGA_v2.0_scaffold38G15006' => 'sas', 'SGA_v2.0_scaffold39G15264' => 'sas', 'SGA_v2.0_scaffold453G51880' => 'sas', 'SHI12696' => 'shi', 'SMO367G1096' => 'smo', 'Solyc01g068630.3' => 'sly', 'Solyc05g011880.3' => 'sly', 'Solyc06g076300.3' => 'sly', 'Solyc09g010940.4' => 'sly', 'Solyc09g075890.3' => 'sly', 'Sopen01g030560' => 'spe', 'Sopen05g006630' => 'spe', 'Sopen06g032720' => 'spe', 'Sopen09g005660' => 'spe', 'Sopen09g030690' => 'spe', 'Sp4g14540' => 'spa', 'Sp4g20030' => 'spa', 'Sp5g01320' => 'spa', 'Sp6g21170' => 'spa', 'Sp6g21180' => 'spa', 'Sp6g21190' => 'spa', 'Sp6g40220' => 'spa', 'TAR362G0122' => 'tar', 'TAR362G1338' => 'tar', 'TAR369G0590' => 'tar', 'TAR371G0824' => 'tar', 'TAR622G1429' => 'tar', 'TAR623G0734' => 'tar', 'TAR625G0441' => 'tar', 'TAR629G0976' => 'tar', 'TAR633G1195' => 'tar', 'TAR636G2660' => 'tar', 'THA.LOC104799440' => 'tha', 'THA.LOC104800966' => 'tha', 'THA.LOC104806559' => 'tha', 'THA.LOC104810765' => 'tha', 'THA.LOC104816266' => 'tha', 'THA.LOC104817419' => 'tha', 'THA.LOC104827021' => 'tha', 'Thecc.01G327400' => 'tca', 'Thecc.04G229200' => 'tca', 'Thecc.05G037400' => 'tca', 'Thecc.09G318600' => 'tca', 'Thecc.09G318700' => 'tca', 'Thhalv10006238m.g' => 'esa', 'Thhalv10014321m.g' => 'esa', 'Thhalv10014335m.g' => 'esa', 'Thhalv10015826m.g' => 'esa', 'Thhalv10017107m.g' => 'esa', 'Thhalv10017180m.g' => 'esa', 'Thhalv10029339m.g' => 'esa', 'TPR.G1699' => 'tpr', 'TPR.G23609' => 'tpr', 'TPR.G3081' => 'tpr', 'TPR.G40397' => 'tpr', 'TPR.G5522' => 'tpr', 'TPR.G5618' => 'tpr', 'TPR.G5626' => 'tpr', 'TWI09G1632' => 'twi', 'TWI23G1230' => 'twi', 'TWI53G1064' => 'twi', 'TWI59G0751' => 'twi', 'TWI74G0947' => 'twi', 'TWI77G0337' => 'twi', 'TWI79G1254' => 'twi', 'unitig_0.g2341' => 'ugi', 'unitig_26.g10006' => 'ugi', 'unitig_26.g10008' => 'ugi', 'unitig_26.g9192' => 'ugi', 'vmacro14547' => 'vma', 'vmacro15333' => 'vma', 'vmacro18743' => 'vma', 'vmacro20166' => 'vma', 'VMungo0331G0523' => 'vmu', 'VMungo0331G1202' => 'vmu', 'VMungo0720G1228' => 'vmu', 'VMungo0720G1514' => 'vmu', 'VMungo1080G0169' => 'vmu', 'VMungo1127G1475' => 'vmu', 'VMungo1383G1208' => 'vmu', 'VMungo1383G1698' => 'vmu', 'Zm00001eb012270' => 'zma', 'Zm00001eb054100' => 'zma', 'Zm00001eb063350' => 'zma', 'Zm00001eb328560' => 'zma', 'Zm00001eb342820' => 'zma', 'Zm00001eb362210' => 'zma', 'Zm00001eb397730' => 'zma', 'Zm00001eb399750' => 'zma' ), 'gf_id' => 'HOM05D000959', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000959' ), 'data_identifier' => 'HOM05D000959', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000959', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '622', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p07100' => 'bna', 'A03p11720' => 'bna', 'A05p08300' => 'bna', 'A05p13380' => 'bna', 'A09p54130' => 'bna', 'A10p16690' => 'bna', 'A10p16700' => 'bna', 'A10p33390' => 'bna', 'Aa31LG10G16020' => 'aar', 'Aa31LG1G11810' => 'aar', 'Aa31LG1G11830' => 'aar', 'Aa31LG1G22510' => 'aar', 'Aa31LG5G4890' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5793' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2310' => 'aag', 'Actinidia08499' => 'ach', 'Actinidia11262' => 'ach', 'Actinidia23926' => 'ach', 'Actinidia34420' => 'ach', 'Actinidia36970' => 'ach', 'Ah.02g111220' => 'amhyb', 'Ah.15g097750' => 'amhyb', 'AL4G27500' => 'aly', 'AL6G11470' => 'aly', 'AL8G35950' => 'aly', 'AL8G35960' => 'aly', 'AL8G35970' => 'aly', 'Aqoxy1G00912' => 'aox', 'Aqoxy2G02253' => 'aox', 'Aqoxy2G02411' => 'aox', 'Aqoxy5G00485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BZ66YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K8ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM4FUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6BF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HFV7XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25JBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0YNNV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MAKK6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P70IT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP2Z6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V61LZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YWP64R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3S9AI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7PGHH' => 'arhy', 'AT2G32150' => 'ath', 'AT3G62040' => 'ath', 'AT5G02230' => 'ath', 'AT5G59480' => 'ath', 'AT5G59490' => 'ath', 'ATR0332G060' => 'atr', 'ATR0559G190' => 'atr', 'ATR0693G294' => 'atr', 'Atru.chr3.3975' => 'acertr', 'Atru.chr3.3976' => 'acertr', 'Atru.chr3.3977' => 'acertr', 'Atru.chr4.2498' => 'acertr', 'Atru.chr5.838' => 'acertr', 'Atru.chr8.1990' => 'acertr', 'Atru.chr8.1991' => 'acertr', 'Atru.chr8.1992' => 'acertr', 'AUR62001759' => 'cqu', 'AUR62009545' => 'cqu', 'AUR62010474' => 'cqu', 'AUR62025820' => 'cqu', 'AUR62030422' => 'cqu', 'AUR62033605' => 'cqu', 'AUR62038615' => 'cqu', 'AUR62041347' => 'cqu', 'BcaB01g04574' => 'bca', 'BcaB02g09263' => 'bca', 'BcaB02g10453' => 'bca', 'BcaB05g22513' => 'bca', 'BcaB08g36253' => 'bca', 'BcaB08g36254' => 'bca', 'BcaC01g06519' => 'bca', 'BcaC02g11889' => 'bca', 'BcaC03g14010' => 'bca', 'BcaC03g18439' => 'bca', 'BcaC04g19765' => 'bca', 'BcaC09g48432' => 'bca', 'BcaNung07302' => 'bca', 'BolC2t06040H' => 'bol', 'BolC2t07346H' => 'bol', 'BolC3t13817H' => 'bol', 'BolC4t22625H' => 'bol', 'BolC4t23297H' => 'bol', 'BolC8t51278H' => 'bol', 'BolC9t58050H' => 'bol', 'BolC9t58051H' => 'bol', 'BolC9t60163H' => 'bol', 'BraA02t04712Z' => 'bra', 'BraA02t05791Z' => 'bra', 'BraA03t10483Z' => 'bra', 'BraA05t19795Z' => 'bra', 'BraA05t20276Z' => 'bra', 'BraA09t40827Z' => 'bra', 'BraA10t43750Z' => 'bra', 'BraA10t43751Z' => 'bra', 'BraA10t45370Z' => 'bra', 'C02p00400' => 'bna', 'C02p12460' => 'bna', 'C03p13680' => 'bna', 'C04p10270' => 'bna', 'C04p17500' => 'bna', 'C08p37010' => 'bna', 'C09p51880' => 'bna', 'C09p51890' => 'bna', 'C09p74300' => 'bna', 'CAN.G179.26' => 'can', 'CAN.G3384.1' => 'can', 'CAN.G394.68' => 'can', 'CAN.G907.13' => 'can', 'CANSAT11G0012' => 'cansat', 'CANSAT25G1586' => 'cansat', 'CANSAT35G0735' => 'cansat', 'CANSAT54G0556' => 'cansat', 'CANSAT64G0356' => 'cansat', 'CANSAT78G2042' => 'cansat', 'CARHR125920' => 'chi', 'CARHR131910' => 'chi', 'CARHR172390' => 'chi', 'CARHR211140' => 'chi', 'CARHR285850' => 'chi', 'CARHR285860' => 'chi', 'Carub.0004s1347' => 'cru', 'Carub.0004s1960' => 'cru', 'Carub.0005s2880' => 'cru', 'Carub.0006s0107' => 'cru', 'Carub.0008s2015' => 'cru', 'Carub.0008s2016' => 'cru', 'Carub.0008s2017' => 'cru', 'Ca_01315_v3' => 'car', 'Ca_05063_v3' => 'car', 'Ca_10231_v3' => 'car', 'Ca_10913_v3' => 'car', 'Ca_19156_v3' => 'car', 'Ca_23644_v3' => 'car', 'Ca_26735_v3' => 'car', 'Cc01_g13130' => 'ccan', 'Cc02_g21690' => 'ccan', 'Cc03_g03600' => 'ccan', 'Cc06_g02510' => 'ccan', 'CDE02G1265' => 'cde', 'CDE05G0415' => 'cde', 'CDE08G1082' => 'cde', 'Cfa005780' => 'cfa', 'Cfa011522' => 'cfa', 'Cfa011523' => 'cfa', 'Cfa015627' => 'cfa', 'Cfa017359' => 'cfa', 'Ciclev10005687m.g' => 'ccl', 'Ciclev10012173m.g' => 'ccl', 'Ciclev10021621m.g' => 'ccl', 'Ciclev10028968m.g' => 'ccl', 'Ciclev10029907m.g' => 'ccl', 'CiPaw.01G164800' => 'cil', 'CiPaw.07G083700' => 'cil', 'CiPaw.07G127000' => 'cil', 'CiPaw.07G136900' => 'cil', 'CiPaw.08G081700' => 'cil', 'CiPaw.09G194600' => 'cil', 'CiPaw.10G146500' => 'cil', 'CiPaw.13G091500' => 'cil', 'CiPaw.13G091600' => 'cil', 'ClCG00G003390' => 'cla', 'ClCG01G007220' => 'cla', 'ClCG03G001370' => 'cla', 'ClCG04G008100' => 'cla', 'ClCG06G006110' => 'cla', 'ClCG06G006130' => 'cla', 'ClCG10G021210' => 'cla', 'COL.COLO4_07648' => 'col', 'COL.COLO4_07650' => 'col', 'COL.COLO4_07651' => 'col', 'COL.COLO4_14780' => 'col', 'COL.COLO4_18546' => 'col', 'COL.COLO4_18547' => 'col', 'COL.COLO4_23103' => 'col', 'COL.COLO4_30419' => 'col', 'COL.COLO4_34232' => 'col', 'Cpa.g.sc169.20' => 'cpa', 'Cpa.g.sc57.45' => 'cpa', 'Cpa.g.sc58.124' => 'cpa', 'Cpa.g.sc58.125' => 'cpa', 'Cpa.g.sc81.118' => 'cpa', 'Cpa.g.sc81.119' => 'cpa', 'Cre12.g524700' => 'cre', 'CsaV3_1G034430' => 'csa', 'CsaV3_1G034440' => 'csa', 'CsaV3_1G034450' => 'csa', 'CsaV3_3G034830' => 'csa', 'CsaV3_4G025090' => 'csa', 'CsaV3_5G018660' => 'csa', 'CsaV3_6G038160' => 'csa', 'CSS0003447' => 'camsi', 'CSS0017840' => 'camsi', 'CSS0019260' => 'camsi', 'CSS0040375' => 'camsi', 'CSS0042533' => 'camsi', 'DCAR_005960' => 'dca', 'DCAR_012104' => 'dca', 'DCAR_012105' => 'dca', 'DCAR_012293' => 'dca', 'DCAR_015632' => 'dca', 'DCAR_024602' => 'dca', 'DCAR_028752' => 'dca', 'Dinv06261' => 'din', 'Dinv13982' => 'din', 'Dinv17029' => 'din', 'Dinv18463' => 'din', 'Dinv33181' => 'din', 'Dinv35585' => 'din', 'Dinv37161' => 'din', 'Dinv42977' => 'din', 'Dinv43122' => 'din', 'Dinv44517' => 'din', 'Duzib093G0256' => 'dzi', 'Duzib106G1254' => 'dzi', 'Duzib128G1789' => 'dzi', 'Duzib133G0633' => 'dzi', 'Duzib138G0510' => 'dzi', 'Duzib150G1084' => 'dzi', 'Duzib168G0488' => 'dzi', 'Duzib168G1523' => 'dzi', 'Duzib170G0133' => 'dzi', 'ECA234G1433' => 'eca', 'ECA236G1432' => 'eca', 'ECA236G2256' => 'eca', 'ECA236G2365' => 'eca', 'ECA236G4830' => 'eca', 'ECA248G1505' => 'eca', 'EL10Ac3g06431' => 'bvu', 'EL10Ac5g12577' => 'bvu', 'EL10Ac6g13533' => 'bvu', 'EL10Ac7g16045' => 'bvu', 'Eucgr.A01281' => 'egr', 'Eucgr.B02326' => 'egr', 'Eucgr.H03532' => 'egr', 'Eucgr.K00553' => 'egr', 'Eucgr.K03116' => 'egr', 'FAN02G3963' => 'fan', 'FAN05G0438' => 'fan', 'FAN09G2434' => 'fan', 'FAN12G3984' => 'fan', 'FAN14G0798' => 'fan', 'FAN17G0652' => 'fan', 'FAN19G1988' => 'fan', 'FAN22G0632' => 'fan', 'FAN23G0387' => 'fan', 'FAN26G1323' => 'fan', 'FAN28G0666' => 'fan', 'FvH4_1g26080' => 'fve', 'FvH4_3g36780' => 'fve', 'FvH4_4g15270' => 'fve', 'FvH4_6g13490' => 'fve', 'Glyma.01G098700' => 'gma', 'Glyma.03G065900' => 'gma', 'Glyma.03G073754' => 'gma', 'Glyma.03G073758' => 'gma', 'Glyma.03G083200' => 'gma', 'Glyma.03G225500' => 'gma', 'Glyma.05G037766' => 'gma', 'Glyma.07G133500' => 'gma', 'Glyma.10G139400' => 'gma', 'Glyma.10G248900' => 'gma', 'Glyma.11G137800' => 'gma', 'Glyma.12G061300' => 'gma', 'Glyma.13G337900' => 'gma', 'Glyma.15G036600' => 'gma', 'Glyma.18G182800' => 'gma', 'Glyma.19G222500' => 'gma', 'Glyma.20G144800' => 'gma', 'Gohir.A01G222000' => 'ghi', 'Gohir.A03G044000' => 'ghi', 'Gohir.A03G044100' => 'ghi', 'Gohir.A04G083100' => 'ghi', 'Gohir.A07G127200' => 'ghi', 'Gohir.A07G132400' => 'ghi', 'Gohir.A08G000700' => 'ghi', 'Gohir.A11G327300' => 'ghi', 'Gohir.D01G211500' => 'ghi', 'Gohir.D03G123400' => 'ghi', 'Gohir.D03G123500' => 'ghi', 'Gohir.D04G121800' => 'ghi', 'Gohir.D07G131500' => 'ghi', 'Gohir.D07G136600' => 'ghi', 'Gohir.D08G011600' => 'ghi', 'Gohir.D11G346200' => 'ghi', 'Gorai.001G142800' => 'gra', 'Gorai.001G148700' => 'gra', 'Gorai.002G257300' => 'gra', 'Gorai.003G130000' => 'gra', 'Gorai.003G130100' => 'gra', 'Gorai.004G005300' => 'gra', 'Gorai.007G376500' => 'gra', 'Gorai.012G104700' => 'gra', 'GSVIVG01017946001' => 'vvi', 'GSVIVG01024928001' => 'vvi', 'GSVIVG01028227001' => 'vvi', 'GSVIVG01034151001' => 'vvi', 'HanXRQChr05g0135031' => 'han', 'HanXRQChr05g0135041' => 'han', 'HanXRQChr05g0140021' => 'han', 'HanXRQChr06g0178981' => 'han', 'HanXRQChr07g0188251' => 'han', 'HanXRQChr08g0235311' => 'han', 'HanXRQChr09g0271011' => 'han', 'HanXRQChr10g0293321' => 'han', 'HanXRQChr13g0388171' => 'han', 'Haze_00916' => 'cav', 'Haze_05063' => 'cav', 'Haze_20814' => 'cav', 'Haze_24128' => 'cav', 'Hma1.2p1_0745F.1_g212010' => 'hma', 'Hma1.2p1_0757F.1_g213260' => 'hma', 'Hma1.2p1_0936F.1_g238840' => 'hma', 'Hma1.2p1_1735F.1_g299890' => 'hma', 'Hma1.2p1_1861F.1_g305685' => 'hma', 'HPP92_003397' => 'vpl', 'HPP92_012597' => 'vpl', 'HPP92_015520' => 'vpl', 'HPP92_015539' => 'vpl', 'HPP92_020373' => 'vpl', 'Hund04938' => 'sun', 'Hund10677' => 'sun', 'Hund11033' => 'sun', 'Hund12155' => 'sun', 'Lalb_Chr01g0022551' => 'lal', 'Lalb_Chr03g0042341' => 'lal', 'Lalb_Chr07g0192931' => 'lal', 'Lalb_Chr12g0209551' => 'lal', 'Lalb_Chr19g0125251' => 'lal', 'Lalb_Chr19g0137891' => 'lal', 'Lalb_Chr21g0304641' => 'lal', 'Lalb_Chr21g0309881' => 'lal', 'Lj1A5T12' => 'lonja', 'Lj1C148G10' => 'lonja', 'Lj2A93T83' => 'lonja', 'Lj3A738G68' => 'lonja', 'Lj3C966T1' => 'lonja', 'Lj3g0018958' => 'lja', 'Lj3g0021831' => 'lja', 'Lj3g0025443' => 'lja', 'Lj4g0026809' => 'lja', 'Lj5g0012558' => 'lja', 'Lj5g0021586' => 'lja', 'Lsat_1_v5_gn_5_156840' => 'lsa', 'Lsat_1_v5_gn_8_73460' => 'lsa', 'Lsat_1_v5_gn_8_73481' => 'lsa', 'Lsat_1_v5_gn_9_31601' => 'lsa', 'Lsat_1_v5_gn_9_77320' => 'lsa', 'Manes.01G171300' => 'mes', 'Manes.01G171400' => 'mes', 'Manes.01G236100' => 'mes', 'Manes.02G130500' => 'mes', 'Manes.02G130600' => 'mes', 'Manes.03G180200' => 'mes', 'Manes.05G007000' => 'mes', 'Manes.08G084400' => 'mes', 'Manes.09G092600' => 'mes', 'Manes.15G027900' => 'mes', 'MBI04_g40948_MAGBIO' => 'mbi', 'MBI14_g12123_MAGBIO' => 'mbi', 'MBI18_g28915_MAGBIO' => 'mbi', 'MCO09G053' => 'mco', 'MCO11G782' => 'mco', 'MCO15G215' => 'mco', 'MD03G1088500' => 'mdo', 'MD03G1088600' => 'mdo', 'MD04G1130800' => 'mdo', 'MD09G1291700' => 'mdo', 'MD11G1097500' => 'mdo', 'MD11G1097600' => 'mdo', 'MD12G1143900' => 'mdo', 'MD13G1191400' => 'mdo', 'MD16G1191500' => 'mdo', 'Medtr1g085570' => 'mtr', 'Medtr1g104610' => 'mtr', 'Medtr2g097520' => 'mtr', 'Medtr4g021800' => 'mtr', 'Medtr4g021825' => 'mtr', 'Medtr4g064270' => 'mtr', 'Medtr4g064380' => 'mtr', 'Medtr7g062150' => 'mtr', 'MELO3C003138.2' => 'cme', 'MELO3C005187.2' => 'cme', 'MELO3C009252.2' => 'cme', 'MELO3C014481.2' => 'cme', 'MELO3C020616.2' => 'cme', 'MELO3C020617.2' => 'cme', 'MELO3C020618.2' => 'cme', 'Migut.G00328' => 'egut', 'Migut.J00320' => 'egut', 'Migut.L01000' => 'egut', 'Migut.L01953' => 'egut', 'MSTRG.10253' => 'ama', 'MSTRG.19077' => 'ama', 'MSTRG.26780' => 'ama', 'MSTRG.4023' => 'ama', 'MSTRG.5655' => 'ama', 'MSTRG.9992' => 'ama', 'Nitab4.5_0000043g0310' => 'nta', 'Nitab4.5_0000463g0080' => 'nta', 'Nitab4.5_0000705g0170' => 'nta', 'Nitab4.5_0001326g0060' => 'nta', 'Nitab4.5_0001628g0030' => 'nta', 'Nitab4.5_0002103g0110' => 'nta', 'Nitab4.5_0002946g0030' => 'nta', 'Nitab4.5_0004639g0030' => 'nta', 'Nn2g11149' => 'nnu', 'Nn2g13389' => 'nnu', 'Nn4g25326' => 'nnu', 'Nn4g26290' => 'nnu', 'Nn5g29865' => 'nnu', 'Oeu004163.1' => 'oeu', 'Oeu006901.1' => 'oeu', 'Oeu010096.1' => 'oeu', 'Oeu024340.1' => 'oeu', 'Oeu048369.1' => 'oeu', 'Os01g0973000' => 'osa', 'Os03g0273800' => 'osa', 'Os03g0701200' => 'osa', 'Os03g0834050' => 'osa', 'Os07g0634400' => 'osa', 'Peaxi162Scf00092g01414' => 'pax', 'Peaxi162Scf00165g00818' => 'pax', 'Peaxi162Scf00309g00516' => 'pax', 'Peaxi162Scf00774g00218' => 'pax', 'PGR004G1824' => 'pgr', 'PGR004G2606' => 'pgr', 'PGR031G2716' => 'pgr', 'PGR102G2460' => 'pgr', 'PGR142G2599' => 'pgr', 'PGSC0003DMG400000843' => 'stu', 'PGSC0003DMG400008829' => 'stu', 'PGSC0003DMG400030418' => 'stu', 'PGSC0003DMG400031834' => 'stu', 'PGSC0003DMG401028300' => 'stu', 'PGSC0003DMG402028300' => 'stu', 'Phvul.001G219300' => 'pvu', 'Phvul.007G056000' => 'pvu', 'Phvul.007G208000' => 'pvu', 'Phvul.008G119500' => 'pvu', 'Phvul.010G011200' => 'pvu', 'Phvul.010G014800' => 'pvu', 'Phvul.011G062900' => 'pvu', 'Phvul.L007043' => 'pvu', 'Potri.001G242300' => 'ptr', 'Potri.002G185300' => 'ptr', 'Potri.006G086900' => 'ptr', 'Potri.008G151700' => 'ptr', 'Potri.009G033500' => 'ptr', 'Potri.010G089300' => 'ptr', 'Potri.014G110800' => 'ptr', 'Pp3c27_8130' => 'ppa', 'Pp3c6_27410' => 'ppa', 'PRCOL_00001659' => 'pco', 'PRCOL_00001927' => 'pco', 'PRCOL_00003649' => 'pco', 'Prupe.1G011600' => 'ppe', 'Prupe.3G000800' => 'ppe', 'Prupe.3G001100' => 'ppe', 'Prupe.6G072700' => 'ppe', 'Prupe.6G072800' => 'ppe', 'Prupe.6G257300' => 'ppe', 'Prupe.8G033000' => 'ppe', 'Psat0s2633g0080' => 'psa', 'Psat0s3396g0080' => 'psa', 'Psat0s3396g0200' => 'psa', 'Psat3g139080' => 'psa', 'Psat5g285080' => 'psa', 'Psat6g157760' => 'psa', 'Psat6g208440' => 'psa', 'Psat7g215320' => 'psa', 'Psat7g215400' => 'psa', 'Psat7g235600' => 'psa', 'Psat7g235760' => 'psa', 'PSO063G4603' => 'pso', 'PSO210G0182' => 'pso', 'PSO210G0196' => 'pso', 'PSO339G0394' => 'pso', 'PSO339G4127' => 'pso', 'PSO513G0064' => 'pso', 'PSO761G0079' => 'pso', 'QL01p031003' => 'qlo', 'QL01p031078' => 'qlo', 'QL06p003004' => 'qlo', 'QL07p048731' => 'qlo', 'QL09p037427' => 'qlo', 'RcHm_v2.0_Chr3g0466361' => 'rch', 'RcHm_v2.0_Chr3g0485571' => 'rch', 'RcHm_v2.0_Chr4g0416551' => 'rch', 'RcHm_v2.0_Chr5g0065831' => 'rch', 'Rhsim01G0230500' => 'rsi', 'Rhsim05G0194000' => 'rsi', 'Rhsim08G0250400' => 'rsi', 'Sabra02G0131000' => 'sbr', 'Sabra06G0066300' => 'sbr', 'Sabra08G0115500' => 'sbr', 'Sabra09G0023900' => 'sbr', 'Sabra10G0054000' => 'sbr', 'Sabra14G0081500' => 'sbr', 'Sabra16G0147100' => 'sbr', 'SalBow2G2957' => 'sbo', 'SalBow4G3320' => 'sbo', 'SalBow8G1894' => 'sbo', 'Sc07g0007950' => 'sci', 'Sc12g0001360' => 'sci', 'Sc13g0004330' => 'sci', 'Sc20g0005010' => 'sci', 'Sed0000361' => 'sed', 'Sed0001706' => 'sed', 'Sed0002422' => 'sed', 'Sed0004029' => 'sed', 'Sed0004602' => 'sed', 'Sed0004943' => 'sed', 'Sed0008646' => 'sed', 'Sed0023313' => 'sed', 'Sed0024843' => 'sed', 'SEGI_00081' => 'sgi', 'SEGI_00947' => 'sgi', 'SEGI_04046' => 'sgi', 'SEGI_06880' => 'sgi', 'SEGI_09736' => 'sgi', 'SEGI_12741' => 'sgi', 'SEGI_14530' => 'sgi', 'SEGI_20705' => 'sgi', 'SEGI_26088' => 'sgi', 'SEGI_28323' => 'sgi', 'SEGI_33343' => 'sgi', 'SGA_v2.0_scaffold126G33775' => 'sas', 'SGA_v2.0_scaffold2G01337' => 'sas', 'SGA_v2.0_scaffold38G15006' => 'sas', 'SGA_v2.0_scaffold39G15264' => 'sas', 'SGA_v2.0_scaffold453G51880' => 'sas', 'SHI12696' => 'shi', 'SMO367G1096' => 'smo', 'Solyc01g068630.3' => 'sly', 'Solyc05g011880.3' => 'sly', 'Solyc06g076300.3' => 'sly', 'Solyc09g010940.4' => 'sly', 'Solyc09g075890.3' => 'sly', 'Sopen01g030560' => 'spe', 'Sopen05g006630' => 'spe', 'Sopen06g032720' => 'spe', 'Sopen09g005660' => 'spe', 'Sopen09g030690' => 'spe', 'Sp4g14540' => 'spa', 'Sp4g20030' => 'spa', 'Sp5g01320' => 'spa', 'Sp6g21170' => 'spa', 'Sp6g21180' => 'spa', 'Sp6g21190' => 'spa', 'Sp6g40220' => 'spa', 'TAR362G0122' => 'tar', 'TAR362G1338' => 'tar', 'TAR369G0590' => 'tar', 'TAR371G0824' => 'tar', 'TAR622G1429' => 'tar', 'TAR623G0734' => 'tar', 'TAR625G0441' => 'tar', 'TAR629G0976' => 'tar', 'TAR633G1195' => 'tar', 'TAR636G2660' => 'tar', 'THA.LOC104799440' => 'tha', 'THA.LOC104800966' => 'tha', 'THA.LOC104806559' => 'tha', 'THA.LOC104810765' => 'tha', 'THA.LOC104816266' => 'tha', 'THA.LOC104817419' => 'tha', 'THA.LOC104827021' => 'tha', 'Thecc.01G327400' => 'tca', 'Thecc.04G229200' => 'tca', 'Thecc.05G037400' => 'tca', 'Thecc.09G318600' => 'tca', 'Thecc.09G318700' => 'tca', 'Thhalv10006238m.g' => 'esa', 'Thhalv10014321m.g' => 'esa', 'Thhalv10014335m.g' => 'esa', 'Thhalv10015826m.g' => 'esa', 'Thhalv10017107m.g' => 'esa', 'Thhalv10017180m.g' => 'esa', 'Thhalv10029339m.g' => 'esa', 'TPR.G1699' => 'tpr', 'TPR.G23609' => 'tpr', 'TPR.G3081' => 'tpr', 'TPR.G40397' => 'tpr', 'TPR.G5522' => 'tpr', 'TPR.G5618' => 'tpr', 'TPR.G5626' => 'tpr', 'TWI09G1632' => 'twi', 'TWI23G1230' => 'twi', 'TWI53G1064' => 'twi', 'TWI59G0751' => 'twi', 'TWI74G0947' => 'twi', 'TWI77G0337' => 'twi', 'TWI79G1254' => 'twi', 'unitig_0.g2341' => 'ugi', 'unitig_26.g10006' => 'ugi', 'unitig_26.g10008' => 'ugi', 'unitig_26.g9192' => 'ugi', 'vmacro14547' => 'vma', 'vmacro15333' => 'vma', 'vmacro18743' => 'vma', 'vmacro20166' => 'vma', 'VMungo0331G0523' => 'vmu', 'VMungo0331G1202' => 'vmu', 'VMungo0720G1228' => 'vmu', 'VMungo0720G1514' => 'vmu', 'VMungo1080G0169' => 'vmu', 'VMungo1127G1475' => 'vmu', 'VMungo1383G1208' => 'vmu', 'VMungo1383G1698' => 'vmu', 'Zm00001eb012270' => 'zma', 'Zm00001eb054100' => 'zma', 'Zm00001eb063350' => 'zma', 'Zm00001eb328560' => 'zma', 'Zm00001eb342820' => 'zma', 'Zm00001eb362210' => 'zma', 'Zm00001eb397730' => 'zma', 'Zm00001eb399750' => 'zma' ) $gf_id = 'HOM05D000959' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000959' ) $data_identifier = 'HOM05D000959' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 5, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 5, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 10, 'mbi' => (int) 3, 'mco' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 2, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 3, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 11, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399750' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000959', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '622', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p07100' => 'bna', 'A03p11720' => 'bna', 'A05p08300' => 'bna', 'A05p13380' => 'bna', 'A09p54130' => 'bna', 'A10p16690' => 'bna', 'A10p16700' => 'bna', 'A10p33390' => 'bna', 'Aa31LG10G16020' => 'aar', 'Aa31LG1G11810' => 'aar', 'Aa31LG1G11830' => 'aar', 'Aa31LG1G22510' => 'aar', 'Aa31LG5G4890' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5793' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2310' => 'aag', 'Actinidia08499' => 'ach', 'Actinidia11262' => 'ach', 'Actinidia23926' => 'ach', 'Actinidia34420' => 'ach', 'Actinidia36970' => 'ach', 'Ah.02g111220' => 'amhyb', 'Ah.15g097750' => 'amhyb', 'AL4G27500' => 'aly', 'AL6G11470' => 'aly', 'AL8G35950' => 'aly', 'AL8G35960' => 'aly', 'AL8G35970' => 'aly', 'Aqoxy1G00912' => 'aox', 'Aqoxy2G02253' => 'aox', 'Aqoxy2G02411' => 'aox', 'Aqoxy5G00485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BZ66YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K8ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM4FUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6BF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HFV7XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25JBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0YNNV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MAKK6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P70IT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP2Z6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V61LZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YWP64R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3S9AI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7PGHH' => 'arhy', 'AT2G32150' => 'ath', 'AT3G62040' => 'ath', 'AT5G02230' => 'ath', 'AT5G59480' => 'ath', 'AT5G59490' => 'ath', 'ATR0332G060' => 'atr', 'ATR0559G190' => 'atr', 'ATR0693G294' => 'atr', 'Atru.chr3.3975' => 'acertr', 'Atru.chr3.3976' => 'acertr', 'Atru.chr3.3977' => 'acertr', 'Atru.chr4.2498' => 'acertr', 'Atru.chr5.838' => 'acertr', 'Atru.chr8.1990' => 'acertr', 'Atru.chr8.1991' => 'acertr', 'Atru.chr8.1992' => 'acertr', 'AUR62001759' => 'cqu', 'AUR62009545' => 'cqu', 'AUR62010474' => 'cqu', 'AUR62025820' => 'cqu', 'AUR62030422' => 'cqu', 'AUR62033605' => 'cqu', 'AUR62038615' => 'cqu', 'AUR62041347' => 'cqu', 'BcaB01g04574' => 'bca', 'BcaB02g09263' => 'bca', 'BcaB02g10453' => 'bca', 'BcaB05g22513' => 'bca', 'BcaB08g36253' => 'bca', 'BcaB08g36254' => 'bca', 'BcaC01g06519' => 'bca', 'BcaC02g11889' => 'bca', 'BcaC03g14010' => 'bca', 'BcaC03g18439' => 'bca', 'BcaC04g19765' => 'bca', 'BcaC09g48432' => 'bca', 'BcaNung07302' => 'bca', 'BolC2t06040H' => 'bol', 'BolC2t07346H' => 'bol', 'BolC3t13817H' => 'bol', 'BolC4t22625H' => 'bol', 'BolC4t23297H' => 'bol', 'BolC8t51278H' => 'bol', 'BolC9t58050H' => 'bol', 'BolC9t58051H' => 'bol', 'BolC9t60163H' => 'bol', 'BraA02t04712Z' => 'bra', 'BraA02t05791Z' => 'bra', 'BraA03t10483Z' => 'bra', 'BraA05t19795Z' => 'bra', 'BraA05t20276Z' => 'bra', 'BraA09t40827Z' => 'bra', 'BraA10t43750Z' => 'bra', 'BraA10t43751Z' => 'bra', 'BraA10t45370Z' => 'bra', 'C02p00400' => 'bna', 'C02p12460' => 'bna', 'C03p13680' => 'bna', 'C04p10270' => 'bna', 'C04p17500' => 'bna', 'C08p37010' => 'bna', 'C09p51880' => 'bna', 'C09p51890' => 'bna', 'C09p74300' => 'bna', 'CAN.G179.26' => 'can', 'CAN.G3384.1' => 'can', 'CAN.G394.68' => 'can', 'CAN.G907.13' => 'can', 'CANSAT11G0012' => 'cansat', 'CANSAT25G1586' => 'cansat', 'CANSAT35G0735' => 'cansat', 'CANSAT54G0556' => 'cansat', 'CANSAT64G0356' => 'cansat', 'CANSAT78G2042' => 'cansat', 'CARHR125920' => 'chi', 'CARHR131910' => 'chi', 'CARHR172390' => 'chi', 'CARHR211140' => 'chi', 'CARHR285850' => 'chi', 'CARHR285860' => 'chi', 'Carub.0004s1347' => 'cru', 'Carub.0004s1960' => 'cru', 'Carub.0005s2880' => 'cru', 'Carub.0006s0107' => 'cru', 'Carub.0008s2015' => 'cru', 'Carub.0008s2016' => 'cru', 'Carub.0008s2017' => 'cru', 'Ca_01315_v3' => 'car', 'Ca_05063_v3' => 'car', 'Ca_10231_v3' => 'car', 'Ca_10913_v3' => 'car', 'Ca_19156_v3' => 'car', 'Ca_23644_v3' => 'car', 'Ca_26735_v3' => 'car', 'Cc01_g13130' => 'ccan', 'Cc02_g21690' => 'ccan', 'Cc03_g03600' => 'ccan', 'Cc06_g02510' => 'ccan', 'CDE02G1265' => 'cde', 'CDE05G0415' => 'cde', 'CDE08G1082' => 'cde', 'Cfa005780' => 'cfa', 'Cfa011522' => 'cfa', 'Cfa011523' => 'cfa', 'Cfa015627' => 'cfa', 'Cfa017359' => 'cfa', 'Ciclev10005687m.g' => 'ccl', 'Ciclev10012173m.g' => 'ccl', 'Ciclev10021621m.g' => 'ccl', 'Ciclev10028968m.g' => 'ccl', 'Ciclev10029907m.g' => 'ccl', 'CiPaw.01G164800' => 'cil', 'CiPaw.07G083700' => 'cil', 'CiPaw.07G127000' => 'cil', 'CiPaw.07G136900' => 'cil', 'CiPaw.08G081700' => 'cil', 'CiPaw.09G194600' => 'cil', 'CiPaw.10G146500' => 'cil', 'CiPaw.13G091500' => 'cil', 'CiPaw.13G091600' => 'cil', 'ClCG00G003390' => 'cla', 'ClCG01G007220' => 'cla', 'ClCG03G001370' => 'cla', 'ClCG04G008100' => 'cla', 'ClCG06G006110' => 'cla', 'ClCG06G006130' => 'cla', 'ClCG10G021210' => 'cla', 'COL.COLO4_07648' => 'col', 'COL.COLO4_07650' => 'col', 'COL.COLO4_07651' => 'col', 'COL.COLO4_14780' => 'col', 'COL.COLO4_18546' => 'col', 'COL.COLO4_18547' => 'col', 'COL.COLO4_23103' => 'col', 'COL.COLO4_30419' => 'col', 'COL.COLO4_34232' => 'col', 'Cpa.g.sc169.20' => 'cpa', 'Cpa.g.sc57.45' => 'cpa', 'Cpa.g.sc58.124' => 'cpa', 'Cpa.g.sc58.125' => 'cpa', 'Cpa.g.sc81.118' => 'cpa', 'Cpa.g.sc81.119' => 'cpa', 'Cre12.g524700' => 'cre', 'CsaV3_1G034430' => 'csa', 'CsaV3_1G034440' => 'csa', 'CsaV3_1G034450' => 'csa', 'CsaV3_3G034830' => 'csa', 'CsaV3_4G025090' => 'csa', 'CsaV3_5G018660' => 'csa', 'CsaV3_6G038160' => 'csa', 'CSS0003447' => 'camsi', 'CSS0017840' => 'camsi', 'CSS0019260' => 'camsi', 'CSS0040375' => 'camsi', 'CSS0042533' => 'camsi', 'DCAR_005960' => 'dca', 'DCAR_012104' => 'dca', 'DCAR_012105' => 'dca', 'DCAR_012293' => 'dca', 'DCAR_015632' => 'dca', 'DCAR_024602' => 'dca', 'DCAR_028752' => 'dca', 'Dinv06261' => 'din', 'Dinv13982' => 'din', 'Dinv17029' => 'din', 'Dinv18463' => 'din', 'Dinv33181' => 'din', 'Dinv35585' => 'din', 'Dinv37161' => 'din', 'Dinv42977' => 'din', 'Dinv43122' => 'din', 'Dinv44517' => 'din', 'Duzib093G0256' => 'dzi', 'Duzib106G1254' => 'dzi', 'Duzib128G1789' => 'dzi', 'Duzib133G0633' => 'dzi', 'Duzib138G0510' => 'dzi', 'Duzib150G1084' => 'dzi', 'Duzib168G0488' => 'dzi', 'Duzib168G1523' => 'dzi', 'Duzib170G0133' => 'dzi', 'ECA234G1433' => 'eca', 'ECA236G1432' => 'eca', 'ECA236G2256' => 'eca', 'ECA236G2365' => 'eca', 'ECA236G4830' => 'eca', 'ECA248G1505' => 'eca', 'EL10Ac3g06431' => 'bvu', 'EL10Ac5g12577' => 'bvu', 'EL10Ac6g13533' => 'bvu', 'EL10Ac7g16045' => 'bvu', 'Eucgr.A01281' => 'egr', 'Eucgr.B02326' => 'egr', 'Eucgr.H03532' => 'egr', 'Eucgr.K00553' => 'egr', 'Eucgr.K03116' => 'egr', 'FAN02G3963' => 'fan', 'FAN05G0438' => 'fan', 'FAN09G2434' => 'fan', 'FAN12G3984' => 'fan', 'FAN14G0798' => 'fan', 'FAN17G0652' => 'fan', 'FAN19G1988' => 'fan', 'FAN22G0632' => 'fan', 'FAN23G0387' => 'fan', 'FAN26G1323' => 'fan', 'FAN28G0666' => 'fan', 'FvH4_1g26080' => 'fve', 'FvH4_3g36780' => 'fve', 'FvH4_4g15270' => 'fve', 'FvH4_6g13490' => 'fve', 'Glyma.01G098700' => 'gma', 'Glyma.03G065900' => 'gma', 'Glyma.03G073754' => 'gma', 'Glyma.03G073758' => 'gma', 'Glyma.03G083200' => 'gma', 'Glyma.03G225500' => 'gma', 'Glyma.05G037766' => 'gma', 'Glyma.07G133500' => 'gma', 'Glyma.10G139400' => 'gma', 'Glyma.10G248900' => 'gma', 'Glyma.11G137800' => 'gma', 'Glyma.12G061300' => 'gma', 'Glyma.13G337900' => 'gma', 'Glyma.15G036600' => 'gma', 'Glyma.18G182800' => 'gma', 'Glyma.19G222500' => 'gma', 'Glyma.20G144800' => 'gma', 'Gohir.A01G222000' => 'ghi', 'Gohir.A03G044000' => 'ghi', 'Gohir.A03G044100' => 'ghi', 'Gohir.A04G083100' => 'ghi', 'Gohir.A07G127200' => 'ghi', 'Gohir.A07G132400' => 'ghi', 'Gohir.A08G000700' => 'ghi', 'Gohir.A11G327300' => 'ghi', 'Gohir.D01G211500' => 'ghi', 'Gohir.D03G123400' => 'ghi', 'Gohir.D03G123500' => 'ghi', 'Gohir.D04G121800' => 'ghi', 'Gohir.D07G131500' => 'ghi', 'Gohir.D07G136600' => 'ghi', 'Gohir.D08G011600' => 'ghi', 'Gohir.D11G346200' => 'ghi', 'Gorai.001G142800' => 'gra', 'Gorai.001G148700' => 'gra', 'Gorai.002G257300' => 'gra', 'Gorai.003G130000' => 'gra', 'Gorai.003G130100' => 'gra', 'Gorai.004G005300' => 'gra', 'Gorai.007G376500' => 'gra', 'Gorai.012G104700' => 'gra', 'GSVIVG01017946001' => 'vvi', 'GSVIVG01024928001' => 'vvi', 'GSVIVG01028227001' => 'vvi', 'GSVIVG01034151001' => 'vvi', 'HanXRQChr05g0135031' => 'han', 'HanXRQChr05g0135041' => 'han', 'HanXRQChr05g0140021' => 'han', 'HanXRQChr06g0178981' => 'han', 'HanXRQChr07g0188251' => 'han', 'HanXRQChr08g0235311' => 'han', 'HanXRQChr09g0271011' => 'han', 'HanXRQChr10g0293321' => 'han', 'HanXRQChr13g0388171' => 'han', 'Haze_00916' => 'cav', 'Haze_05063' => 'cav', 'Haze_20814' => 'cav', 'Haze_24128' => 'cav', 'Hma1.2p1_0745F.1_g212010' => 'hma', 'Hma1.2p1_0757F.1_g213260' => 'hma', 'Hma1.2p1_0936F.1_g238840' => 'hma', 'Hma1.2p1_1735F.1_g299890' => 'hma', 'Hma1.2p1_1861F.1_g305685' => 'hma', 'HPP92_003397' => 'vpl', 'HPP92_012597' => 'vpl', 'HPP92_015520' => 'vpl', 'HPP92_015539' => 'vpl', 'HPP92_020373' => 'vpl', 'Hund04938' => 'sun', 'Hund10677' => 'sun', 'Hund11033' => 'sun', 'Hund12155' => 'sun', 'Lalb_Chr01g0022551' => 'lal', 'Lalb_Chr03g0042341' => 'lal', 'Lalb_Chr07g0192931' => 'lal', 'Lalb_Chr12g0209551' => 'lal', 'Lalb_Chr19g0125251' => 'lal', 'Lalb_Chr19g0137891' => 'lal', 'Lalb_Chr21g0304641' => 'lal', 'Lalb_Chr21g0309881' => 'lal', 'Lj1A5T12' => 'lonja', 'Lj1C148G10' => 'lonja', 'Lj2A93T83' => 'lonja', 'Lj3A738G68' => 'lonja', 'Lj3C966T1' => 'lonja', 'Lj3g0018958' => 'lja', 'Lj3g0021831' => 'lja', 'Lj3g0025443' => 'lja', 'Lj4g0026809' => 'lja', 'Lj5g0012558' => 'lja', 'Lj5g0021586' => 'lja', 'Lsat_1_v5_gn_5_156840' => 'lsa', 'Lsat_1_v5_gn_8_73460' => 'lsa', 'Lsat_1_v5_gn_8_73481' => 'lsa', 'Lsat_1_v5_gn_9_31601' => 'lsa', 'Lsat_1_v5_gn_9_77320' => 'lsa', 'Manes.01G171300' => 'mes', 'Manes.01G171400' => 'mes', 'Manes.01G236100' => 'mes', 'Manes.02G130500' => 'mes', 'Manes.02G130600' => 'mes', 'Manes.03G180200' => 'mes', 'Manes.05G007000' => 'mes', 'Manes.08G084400' => 'mes', 'Manes.09G092600' => 'mes', 'Manes.15G027900' => 'mes', 'MBI04_g40948_MAGBIO' => 'mbi', 'MBI14_g12123_MAGBIO' => 'mbi', 'MBI18_g28915_MAGBIO' => 'mbi', 'MCO09G053' => 'mco', 'MCO11G782' => 'mco', 'MCO15G215' => 'mco', 'MD03G1088500' => 'mdo', 'MD03G1088600' => 'mdo', 'MD04G1130800' => 'mdo', 'MD09G1291700' => 'mdo', 'MD11G1097500' => 'mdo', 'MD11G1097600' => 'mdo', 'MD12G1143900' => 'mdo', 'MD13G1191400' => 'mdo', 'MD16G1191500' => 'mdo', 'Medtr1g085570' => 'mtr', 'Medtr1g104610' => 'mtr', 'Medtr2g097520' => 'mtr', 'Medtr4g021800' => 'mtr', 'Medtr4g021825' => 'mtr', 'Medtr4g064270' => 'mtr', 'Medtr4g064380' => 'mtr', 'Medtr7g062150' => 'mtr', 'MELO3C003138.2' => 'cme', 'MELO3C005187.2' => 'cme', 'MELO3C009252.2' => 'cme', 'MELO3C014481.2' => 'cme', 'MELO3C020616.2' => 'cme', 'MELO3C020617.2' => 'cme', 'MELO3C020618.2' => 'cme', 'Migut.G00328' => 'egut', 'Migut.J00320' => 'egut', 'Migut.L01000' => 'egut', 'Migut.L01953' => 'egut', 'MSTRG.10253' => 'ama', 'MSTRG.19077' => 'ama', 'MSTRG.26780' => 'ama', 'MSTRG.4023' => 'ama', 'MSTRG.5655' => 'ama', 'MSTRG.9992' => 'ama', 'Nitab4.5_0000043g0310' => 'nta', 'Nitab4.5_0000463g0080' => 'nta', 'Nitab4.5_0000705g0170' => 'nta', 'Nitab4.5_0001326g0060' => 'nta', 'Nitab4.5_0001628g0030' => 'nta', 'Nitab4.5_0002103g0110' => 'nta', 'Nitab4.5_0002946g0030' => 'nta', 'Nitab4.5_0004639g0030' => 'nta', 'Nn2g11149' => 'nnu', 'Nn2g13389' => 'nnu', 'Nn4g25326' => 'nnu', 'Nn4g26290' => 'nnu', 'Nn5g29865' => 'nnu', 'Oeu004163.1' => 'oeu', 'Oeu006901.1' => 'oeu', 'Oeu010096.1' => 'oeu', 'Oeu024340.1' => 'oeu', 'Oeu048369.1' => 'oeu', 'Os01g0973000' => 'osa', 'Os03g0273800' => 'osa', 'Os03g0701200' => 'osa', 'Os03g0834050' => 'osa', 'Os07g0634400' => 'osa', 'Peaxi162Scf00092g01414' => 'pax', 'Peaxi162Scf00165g00818' => 'pax', 'Peaxi162Scf00309g00516' => 'pax', 'Peaxi162Scf00774g00218' => 'pax', 'PGR004G1824' => 'pgr', 'PGR004G2606' => 'pgr', 'PGR031G2716' => 'pgr', 'PGR102G2460' => 'pgr', 'PGR142G2599' => 'pgr', 'PGSC0003DMG400000843' => 'stu', 'PGSC0003DMG400008829' => 'stu', 'PGSC0003DMG400030418' => 'stu', 'PGSC0003DMG400031834' => 'stu', 'PGSC0003DMG401028300' => 'stu', 'PGSC0003DMG402028300' => 'stu', 'Phvul.001G219300' => 'pvu', 'Phvul.007G056000' => 'pvu', 'Phvul.007G208000' => 'pvu', 'Phvul.008G119500' => 'pvu', 'Phvul.010G011200' => 'pvu', 'Phvul.010G014800' => 'pvu', 'Phvul.011G062900' => 'pvu', 'Phvul.L007043' => 'pvu', 'Potri.001G242300' => 'ptr', 'Potri.002G185300' => 'ptr', 'Potri.006G086900' => 'ptr', 'Potri.008G151700' => 'ptr', 'Potri.009G033500' => 'ptr', 'Potri.010G089300' => 'ptr', 'Potri.014G110800' => 'ptr', 'Pp3c27_8130' => 'ppa', 'Pp3c6_27410' => 'ppa', 'PRCOL_00001659' => 'pco', 'PRCOL_00001927' => 'pco', 'PRCOL_00003649' => 'pco', 'Prupe.1G011600' => 'ppe', 'Prupe.3G000800' => 'ppe', 'Prupe.3G001100' => 'ppe', 'Prupe.6G072700' => 'ppe', 'Prupe.6G072800' => 'ppe', 'Prupe.6G257300' => 'ppe', 'Prupe.8G033000' => 'ppe', 'Psat0s2633g0080' => 'psa', 'Psat0s3396g0080' => 'psa', 'Psat0s3396g0200' => 'psa', 'Psat3g139080' => 'psa', 'Psat5g285080' => 'psa', 'Psat6g157760' => 'psa', 'Psat6g208440' => 'psa', 'Psat7g215320' => 'psa', 'Psat7g215400' => 'psa', 'Psat7g235600' => 'psa', 'Psat7g235760' => 'psa', 'PSO063G4603' => 'pso', 'PSO210G0182' => 'pso', 'PSO210G0196' => 'pso', 'PSO339G0394' => 'pso', 'PSO339G4127' => 'pso', 'PSO513G0064' => 'pso', 'PSO761G0079' => 'pso', 'QL01p031003' => 'qlo', 'QL01p031078' => 'qlo', 'QL06p003004' => 'qlo', 'QL07p048731' => 'qlo', 'QL09p037427' => 'qlo', 'RcHm_v2.0_Chr3g0466361' => 'rch', 'RcHm_v2.0_Chr3g0485571' => 'rch', 'RcHm_v2.0_Chr4g0416551' => 'rch', 'RcHm_v2.0_Chr5g0065831' => 'rch', 'Rhsim01G0230500' => 'rsi', 'Rhsim05G0194000' => 'rsi', 'Rhsim08G0250400' => 'rsi', 'Sabra02G0131000' => 'sbr', 'Sabra06G0066300' => 'sbr', 'Sabra08G0115500' => 'sbr', 'Sabra09G0023900' => 'sbr', 'Sabra10G0054000' => 'sbr', 'Sabra14G0081500' => 'sbr', 'Sabra16G0147100' => 'sbr', 'SalBow2G2957' => 'sbo', 'SalBow4G3320' => 'sbo', 'SalBow8G1894' => 'sbo', 'Sc07g0007950' => 'sci', 'Sc12g0001360' => 'sci', 'Sc13g0004330' => 'sci', 'Sc20g0005010' => 'sci', 'Sed0000361' => 'sed', 'Sed0001706' => 'sed', 'Sed0002422' => 'sed', 'Sed0004029' => 'sed', 'Sed0004602' => 'sed', 'Sed0004943' => 'sed', 'Sed0008646' => 'sed', 'Sed0023313' => 'sed', 'Sed0024843' => 'sed', 'SEGI_00081' => 'sgi', 'SEGI_00947' => 'sgi', 'SEGI_04046' => 'sgi', 'SEGI_06880' => 'sgi', 'SEGI_09736' => 'sgi', 'SEGI_12741' => 'sgi', 'SEGI_14530' => 'sgi', 'SEGI_20705' => 'sgi', 'SEGI_26088' => 'sgi', 'SEGI_28323' => 'sgi', 'SEGI_33343' => 'sgi', 'SGA_v2.0_scaffold126G33775' => 'sas', 'SGA_v2.0_scaffold2G01337' => 'sas', 'SGA_v2.0_scaffold38G15006' => 'sas', 'SGA_v2.0_scaffold39G15264' => 'sas', 'SGA_v2.0_scaffold453G51880' => 'sas', 'SHI12696' => 'shi', 'SMO367G1096' => 'smo', 'Solyc01g068630.3' => 'sly', 'Solyc05g011880.3' => 'sly', 'Solyc06g076300.3' => 'sly', 'Solyc09g010940.4' => 'sly', 'Solyc09g075890.3' => 'sly', 'Sopen01g030560' => 'spe', 'Sopen05g006630' => 'spe', 'Sopen06g032720' => 'spe', 'Sopen09g005660' => 'spe', 'Sopen09g030690' => 'spe', 'Sp4g14540' => 'spa', 'Sp4g20030' => 'spa', 'Sp5g01320' => 'spa', 'Sp6g21170' => 'spa', 'Sp6g21180' => 'spa', 'Sp6g21190' => 'spa', 'Sp6g40220' => 'spa', 'TAR362G0122' => 'tar', 'TAR362G1338' => 'tar', 'TAR369G0590' => 'tar', 'TAR371G0824' => 'tar', 'TAR622G1429' => 'tar', 'TAR623G0734' => 'tar', 'TAR625G0441' => 'tar', 'TAR629G0976' => 'tar', 'TAR633G1195' => 'tar', 'TAR636G2660' => 'tar', 'THA.LOC104799440' => 'tha', 'THA.LOC104800966' => 'tha', 'THA.LOC104806559' => 'tha', 'THA.LOC104810765' => 'tha', 'THA.LOC104816266' => 'tha', 'THA.LOC104817419' => 'tha', 'THA.LOC104827021' => 'tha', 'Thecc.01G327400' => 'tca', 'Thecc.04G229200' => 'tca', 'Thecc.05G037400' => 'tca', 'Thecc.09G318600' => 'tca', 'Thecc.09G318700' => 'tca', 'Thhalv10006238m.g' => 'esa', 'Thhalv10014321m.g' => 'esa', 'Thhalv10014335m.g' => 'esa', 'Thhalv10015826m.g' => 'esa', 'Thhalv10017107m.g' => 'esa', 'Thhalv10017180m.g' => 'esa', 'Thhalv10029339m.g' => 'esa', 'TPR.G1699' => 'tpr', 'TPR.G23609' => 'tpr', 'TPR.G3081' => 'tpr', 'TPR.G40397' => 'tpr', 'TPR.G5522' => 'tpr', 'TPR.G5618' => 'tpr', 'TPR.G5626' => 'tpr', 'TWI09G1632' => 'twi', 'TWI23G1230' => 'twi', 'TWI53G1064' => 'twi', 'TWI59G0751' => 'twi', 'TWI74G0947' => 'twi', 'TWI77G0337' => 'twi', 'TWI79G1254' => 'twi', 'unitig_0.g2341' => 'ugi', 'unitig_26.g10006' => 'ugi', 'unitig_26.g10008' => 'ugi', 'unitig_26.g9192' => 'ugi', 'vmacro14547' => 'vma', 'vmacro15333' => 'vma', 'vmacro18743' => 'vma', 'vmacro20166' => 'vma', 'VMungo0331G0523' => 'vmu', 'VMungo0331G1202' => 'vmu', 'VMungo0720G1228' => 'vmu', 'VMungo0720G1514' => 'vmu', 'VMungo1080G0169' => 'vmu', 'VMungo1127G1475' => 'vmu', 'VMungo1383G1208' => 'vmu', 'VMungo1383G1698' => 'vmu', 'Zm00001eb012270' => 'zma', 'Zm00001eb054100' => 'zma', 'Zm00001eb063350' => 'zma', 'Zm00001eb328560' => 'zma', 'Zm00001eb342820' => 'zma', 'Zm00001eb362210' => 'zma', 'Zm00001eb397730' => 'zma', 'Zm00001eb399750' => 'zma' ), 'gf_id' => 'HOM05D000959', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000959' ), 'data_identifier' => 'HOM05D000959', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000959', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '622', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p07100' => 'bna', 'A03p11720' => 'bna', 'A05p08300' => 'bna', 'A05p13380' => 'bna', 'A09p54130' => 'bna', 'A10p16690' => 'bna', 'A10p16700' => 'bna', 'A10p33390' => 'bna', 'Aa31LG10G16020' => 'aar', 'Aa31LG1G11810' => 'aar', 'Aa31LG1G11830' => 'aar', 'Aa31LG1G22510' => 'aar', 'Aa31LG5G4890' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5793' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2310' => 'aag', 'Actinidia08499' => 'ach', 'Actinidia11262' => 'ach', 'Actinidia23926' => 'ach', 'Actinidia34420' => 'ach', 'Actinidia36970' => 'ach', 'Ah.02g111220' => 'amhyb', 'Ah.15g097750' => 'amhyb', 'AL4G27500' => 'aly', 'AL6G11470' => 'aly', 'AL8G35950' => 'aly', 'AL8G35960' => 'aly', 'AL8G35970' => 'aly', 'Aqoxy1G00912' => 'aox', 'Aqoxy2G02253' => 'aox', 'Aqoxy2G02411' => 'aox', 'Aqoxy5G00485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BZ66YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K8ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM4FUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6BF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HFV7XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25JBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0YNNV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MAKK6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P70IT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP2Z6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V61LZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YWP64R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3S9AI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7PGHH' => 'arhy', 'AT2G32150' => 'ath', 'AT3G62040' => 'ath', 'AT5G02230' => 'ath', 'AT5G59480' => 'ath', 'AT5G59490' => 'ath', 'ATR0332G060' => 'atr', 'ATR0559G190' => 'atr', 'ATR0693G294' => 'atr', 'Atru.chr3.3975' => 'acertr', 'Atru.chr3.3976' => 'acertr', 'Atru.chr3.3977' => 'acertr', 'Atru.chr4.2498' => 'acertr', 'Atru.chr5.838' => 'acertr', 'Atru.chr8.1990' => 'acertr', 'Atru.chr8.1991' => 'acertr', 'Atru.chr8.1992' => 'acertr', 'AUR62001759' => 'cqu', 'AUR62009545' => 'cqu', 'AUR62010474' => 'cqu', 'AUR62025820' => 'cqu', 'AUR62030422' => 'cqu', 'AUR62033605' => 'cqu', 'AUR62038615' => 'cqu', 'AUR62041347' => 'cqu', 'BcaB01g04574' => 'bca', 'BcaB02g09263' => 'bca', 'BcaB02g10453' => 'bca', 'BcaB05g22513' => 'bca', 'BcaB08g36253' => 'bca', 'BcaB08g36254' => 'bca', 'BcaC01g06519' => 'bca', 'BcaC02g11889' => 'bca', 'BcaC03g14010' => 'bca', 'BcaC03g18439' => 'bca', 'BcaC04g19765' => 'bca', 'BcaC09g48432' => 'bca', 'BcaNung07302' => 'bca', 'BolC2t06040H' => 'bol', 'BolC2t07346H' => 'bol', 'BolC3t13817H' => 'bol', 'BolC4t22625H' => 'bol', 'BolC4t23297H' => 'bol', 'BolC8t51278H' => 'bol', 'BolC9t58050H' => 'bol', 'BolC9t58051H' => 'bol', 'BolC9t60163H' => 'bol', 'BraA02t04712Z' => 'bra', 'BraA02t05791Z' => 'bra', 'BraA03t10483Z' => 'bra', 'BraA05t19795Z' => 'bra', 'BraA05t20276Z' => 'bra', 'BraA09t40827Z' => 'bra', 'BraA10t43750Z' => 'bra', 'BraA10t43751Z' => 'bra', 'BraA10t45370Z' => 'bra', 'C02p00400' => 'bna', 'C02p12460' => 'bna', 'C03p13680' => 'bna', 'C04p10270' => 'bna', 'C04p17500' => 'bna', 'C08p37010' => 'bna', 'C09p51880' => 'bna', 'C09p51890' => 'bna', 'C09p74300' => 'bna', 'CAN.G179.26' => 'can', 'CAN.G3384.1' => 'can', 'CAN.G394.68' => 'can', 'CAN.G907.13' => 'can', 'CANSAT11G0012' => 'cansat', 'CANSAT25G1586' => 'cansat', 'CANSAT35G0735' => 'cansat', 'CANSAT54G0556' => 'cansat', 'CANSAT64G0356' => 'cansat', 'CANSAT78G2042' => 'cansat', 'CARHR125920' => 'chi', 'CARHR131910' => 'chi', 'CARHR172390' => 'chi', 'CARHR211140' => 'chi', 'CARHR285850' => 'chi', 'CARHR285860' => 'chi', 'Carub.0004s1347' => 'cru', 'Carub.0004s1960' => 'cru', 'Carub.0005s2880' => 'cru', 'Carub.0006s0107' => 'cru', 'Carub.0008s2015' => 'cru', 'Carub.0008s2016' => 'cru', 'Carub.0008s2017' => 'cru', 'Ca_01315_v3' => 'car', 'Ca_05063_v3' => 'car', 'Ca_10231_v3' => 'car', 'Ca_10913_v3' => 'car', 'Ca_19156_v3' => 'car', 'Ca_23644_v3' => 'car', 'Ca_26735_v3' => 'car', 'Cc01_g13130' => 'ccan', 'Cc02_g21690' => 'ccan', 'Cc03_g03600' => 'ccan', 'Cc06_g02510' => 'ccan', 'CDE02G1265' => 'cde', 'CDE05G0415' => 'cde', 'CDE08G1082' => 'cde', 'Cfa005780' => 'cfa', 'Cfa011522' => 'cfa', 'Cfa011523' => 'cfa', 'Cfa015627' => 'cfa', 'Cfa017359' => 'cfa', 'Ciclev10005687m.g' => 'ccl', 'Ciclev10012173m.g' => 'ccl', 'Ciclev10021621m.g' => 'ccl', 'Ciclev10028968m.g' => 'ccl', 'Ciclev10029907m.g' => 'ccl', 'CiPaw.01G164800' => 'cil', 'CiPaw.07G083700' => 'cil', 'CiPaw.07G127000' => 'cil', 'CiPaw.07G136900' => 'cil', 'CiPaw.08G081700' => 'cil', 'CiPaw.09G194600' => 'cil', 'CiPaw.10G146500' => 'cil', 'CiPaw.13G091500' => 'cil', 'CiPaw.13G091600' => 'cil', 'ClCG00G003390' => 'cla', 'ClCG01G007220' => 'cla', 'ClCG03G001370' => 'cla', 'ClCG04G008100' => 'cla', 'ClCG06G006110' => 'cla', 'ClCG06G006130' => 'cla', 'ClCG10G021210' => 'cla', 'COL.COLO4_07648' => 'col', 'COL.COLO4_07650' => 'col', 'COL.COLO4_07651' => 'col', 'COL.COLO4_14780' => 'col', 'COL.COLO4_18546' => 'col', 'COL.COLO4_18547' => 'col', 'COL.COLO4_23103' => 'col', 'COL.COLO4_30419' => 'col', 'COL.COLO4_34232' => 'col', 'Cpa.g.sc169.20' => 'cpa', 'Cpa.g.sc57.45' => 'cpa', 'Cpa.g.sc58.124' => 'cpa', 'Cpa.g.sc58.125' => 'cpa', 'Cpa.g.sc81.118' => 'cpa', 'Cpa.g.sc81.119' => 'cpa', 'Cre12.g524700' => 'cre', 'CsaV3_1G034430' => 'csa', 'CsaV3_1G034440' => 'csa', 'CsaV3_1G034450' => 'csa', 'CsaV3_3G034830' => 'csa', 'CsaV3_4G025090' => 'csa', 'CsaV3_5G018660' => 'csa', 'CsaV3_6G038160' => 'csa', 'CSS0003447' => 'camsi', 'CSS0017840' => 'camsi', 'CSS0019260' => 'camsi', 'CSS0040375' => 'camsi', 'CSS0042533' => 'camsi', 'DCAR_005960' => 'dca', 'DCAR_012104' => 'dca', 'DCAR_012105' => 'dca', 'DCAR_012293' => 'dca', 'DCAR_015632' => 'dca', 'DCAR_024602' => 'dca', 'DCAR_028752' => 'dca', 'Dinv06261' => 'din', 'Dinv13982' => 'din', 'Dinv17029' => 'din', 'Dinv18463' => 'din', 'Dinv33181' => 'din', 'Dinv35585' => 'din', 'Dinv37161' => 'din', 'Dinv42977' => 'din', 'Dinv43122' => 'din', 'Dinv44517' => 'din', 'Duzib093G0256' => 'dzi', 'Duzib106G1254' => 'dzi', 'Duzib128G1789' => 'dzi', 'Duzib133G0633' => 'dzi', 'Duzib138G0510' => 'dzi', 'Duzib150G1084' => 'dzi', 'Duzib168G0488' => 'dzi', 'Duzib168G1523' => 'dzi', 'Duzib170G0133' => 'dzi', 'ECA234G1433' => 'eca', 'ECA236G1432' => 'eca', 'ECA236G2256' => 'eca', 'ECA236G2365' => 'eca', 'ECA236G4830' => 'eca', 'ECA248G1505' => 'eca', 'EL10Ac3g06431' => 'bvu', 'EL10Ac5g12577' => 'bvu', 'EL10Ac6g13533' => 'bvu', 'EL10Ac7g16045' => 'bvu', 'Eucgr.A01281' => 'egr', 'Eucgr.B02326' => 'egr', 'Eucgr.H03532' => 'egr', 'Eucgr.K00553' => 'egr', 'Eucgr.K03116' => 'egr', 'FAN02G3963' => 'fan', 'FAN05G0438' => 'fan', 'FAN09G2434' => 'fan', 'FAN12G3984' => 'fan', 'FAN14G0798' => 'fan', 'FAN17G0652' => 'fan', 'FAN19G1988' => 'fan', 'FAN22G0632' => 'fan', 'FAN23G0387' => 'fan', 'FAN26G1323' => 'fan', 'FAN28G0666' => 'fan', 'FvH4_1g26080' => 'fve', 'FvH4_3g36780' => 'fve', 'FvH4_4g15270' => 'fve', 'FvH4_6g13490' => 'fve', 'Glyma.01G098700' => 'gma', 'Glyma.03G065900' => 'gma', 'Glyma.03G073754' => 'gma', 'Glyma.03G073758' => 'gma', 'Glyma.03G083200' => 'gma', 'Glyma.03G225500' => 'gma', 'Glyma.05G037766' => 'gma', 'Glyma.07G133500' => 'gma', 'Glyma.10G139400' => 'gma', 'Glyma.10G248900' => 'gma', 'Glyma.11G137800' => 'gma', 'Glyma.12G061300' => 'gma', 'Glyma.13G337900' => 'gma', 'Glyma.15G036600' => 'gma', 'Glyma.18G182800' => 'gma', 'Glyma.19G222500' => 'gma', 'Glyma.20G144800' => 'gma', 'Gohir.A01G222000' => 'ghi', 'Gohir.A03G044000' => 'ghi', 'Gohir.A03G044100' => 'ghi', 'Gohir.A04G083100' => 'ghi', 'Gohir.A07G127200' => 'ghi', 'Gohir.A07G132400' => 'ghi', 'Gohir.A08G000700' => 'ghi', 'Gohir.A11G327300' => 'ghi', 'Gohir.D01G211500' => 'ghi', 'Gohir.D03G123400' => 'ghi', 'Gohir.D03G123500' => 'ghi', 'Gohir.D04G121800' => 'ghi', 'Gohir.D07G131500' => 'ghi', 'Gohir.D07G136600' => 'ghi', 'Gohir.D08G011600' => 'ghi', 'Gohir.D11G346200' => 'ghi', 'Gorai.001G142800' => 'gra', 'Gorai.001G148700' => 'gra', 'Gorai.002G257300' => 'gra', 'Gorai.003G130000' => 'gra', 'Gorai.003G130100' => 'gra', 'Gorai.004G005300' => 'gra', 'Gorai.007G376500' => 'gra', 'Gorai.012G104700' => 'gra', 'GSVIVG01017946001' => 'vvi', 'GSVIVG01024928001' => 'vvi', 'GSVIVG01028227001' => 'vvi', 'GSVIVG01034151001' => 'vvi', 'HanXRQChr05g0135031' => 'han', 'HanXRQChr05g0135041' => 'han', 'HanXRQChr05g0140021' => 'han', 'HanXRQChr06g0178981' => 'han', 'HanXRQChr07g0188251' => 'han', 'HanXRQChr08g0235311' => 'han', 'HanXRQChr09g0271011' => 'han', 'HanXRQChr10g0293321' => 'han', 'HanXRQChr13g0388171' => 'han', 'Haze_00916' => 'cav', 'Haze_05063' => 'cav', 'Haze_20814' => 'cav', 'Haze_24128' => 'cav', 'Hma1.2p1_0745F.1_g212010' => 'hma', 'Hma1.2p1_0757F.1_g213260' => 'hma', 'Hma1.2p1_0936F.1_g238840' => 'hma', 'Hma1.2p1_1735F.1_g299890' => 'hma', 'Hma1.2p1_1861F.1_g305685' => 'hma', 'HPP92_003397' => 'vpl', 'HPP92_012597' => 'vpl', 'HPP92_015520' => 'vpl', 'HPP92_015539' => 'vpl', 'HPP92_020373' => 'vpl', 'Hund04938' => 'sun', 'Hund10677' => 'sun', 'Hund11033' => 'sun', 'Hund12155' => 'sun', 'Lalb_Chr01g0022551' => 'lal', 'Lalb_Chr03g0042341' => 'lal', 'Lalb_Chr07g0192931' => 'lal', 'Lalb_Chr12g0209551' => 'lal', 'Lalb_Chr19g0125251' => 'lal', 'Lalb_Chr19g0137891' => 'lal', 'Lalb_Chr21g0304641' => 'lal', 'Lalb_Chr21g0309881' => 'lal', 'Lj1A5T12' => 'lonja', 'Lj1C148G10' => 'lonja', 'Lj2A93T83' => 'lonja', 'Lj3A738G68' => 'lonja', 'Lj3C966T1' => 'lonja', 'Lj3g0018958' => 'lja', 'Lj3g0021831' => 'lja', 'Lj3g0025443' => 'lja', 'Lj4g0026809' => 'lja', 'Lj5g0012558' => 'lja', 'Lj5g0021586' => 'lja', 'Lsat_1_v5_gn_5_156840' => 'lsa', 'Lsat_1_v5_gn_8_73460' => 'lsa', 'Lsat_1_v5_gn_8_73481' => 'lsa', 'Lsat_1_v5_gn_9_31601' => 'lsa', 'Lsat_1_v5_gn_9_77320' => 'lsa', 'Manes.01G171300' => 'mes', 'Manes.01G171400' => 'mes', 'Manes.01G236100' => 'mes', 'Manes.02G130500' => 'mes', 'Manes.02G130600' => 'mes', 'Manes.03G180200' => 'mes', 'Manes.05G007000' => 'mes', 'Manes.08G084400' => 'mes', 'Manes.09G092600' => 'mes', 'Manes.15G027900' => 'mes', 'MBI04_g40948_MAGBIO' => 'mbi', 'MBI14_g12123_MAGBIO' => 'mbi', 'MBI18_g28915_MAGBIO' => 'mbi', 'MCO09G053' => 'mco', 'MCO11G782' => 'mco', 'MCO15G215' => 'mco', 'MD03G1088500' => 'mdo', 'MD03G1088600' => 'mdo', 'MD04G1130800' => 'mdo', 'MD09G1291700' => 'mdo', 'MD11G1097500' => 'mdo', 'MD11G1097600' => 'mdo', 'MD12G1143900' => 'mdo', 'MD13G1191400' => 'mdo', 'MD16G1191500' => 'mdo', 'Medtr1g085570' => 'mtr', 'Medtr1g104610' => 'mtr', 'Medtr2g097520' => 'mtr', 'Medtr4g021800' => 'mtr', 'Medtr4g021825' => 'mtr', 'Medtr4g064270' => 'mtr', 'Medtr4g064380' => 'mtr', 'Medtr7g062150' => 'mtr', 'MELO3C003138.2' => 'cme', 'MELO3C005187.2' => 'cme', 'MELO3C009252.2' => 'cme', 'MELO3C014481.2' => 'cme', 'MELO3C020616.2' => 'cme', 'MELO3C020617.2' => 'cme', 'MELO3C020618.2' => 'cme', 'Migut.G00328' => 'egut', 'Migut.J00320' => 'egut', 'Migut.L01000' => 'egut', 'Migut.L01953' => 'egut', 'MSTRG.10253' => 'ama', 'MSTRG.19077' => 'ama', 'MSTRG.26780' => 'ama', 'MSTRG.4023' => 'ama', 'MSTRG.5655' => 'ama', 'MSTRG.9992' => 'ama', 'Nitab4.5_0000043g0310' => 'nta', 'Nitab4.5_0000463g0080' => 'nta', 'Nitab4.5_0000705g0170' => 'nta', 'Nitab4.5_0001326g0060' => 'nta', 'Nitab4.5_0001628g0030' => 'nta', 'Nitab4.5_0002103g0110' => 'nta', 'Nitab4.5_0002946g0030' => 'nta', 'Nitab4.5_0004639g0030' => 'nta', 'Nn2g11149' => 'nnu', 'Nn2g13389' => 'nnu', 'Nn4g25326' => 'nnu', 'Nn4g26290' => 'nnu', 'Nn5g29865' => 'nnu', 'Oeu004163.1' => 'oeu', 'Oeu006901.1' => 'oeu', 'Oeu010096.1' => 'oeu', 'Oeu024340.1' => 'oeu', 'Oeu048369.1' => 'oeu', 'Os01g0973000' => 'osa', 'Os03g0273800' => 'osa', 'Os03g0701200' => 'osa', 'Os03g0834050' => 'osa', 'Os07g0634400' => 'osa', 'Peaxi162Scf00092g01414' => 'pax', 'Peaxi162Scf00165g00818' => 'pax', 'Peaxi162Scf00309g00516' => 'pax', 'Peaxi162Scf00774g00218' => 'pax', 'PGR004G1824' => 'pgr', 'PGR004G2606' => 'pgr', 'PGR031G2716' => 'pgr', 'PGR102G2460' => 'pgr', 'PGR142G2599' => 'pgr', 'PGSC0003DMG400000843' => 'stu', 'PGSC0003DMG400008829' => 'stu', 'PGSC0003DMG400030418' => 'stu', 'PGSC0003DMG400031834' => 'stu', 'PGSC0003DMG401028300' => 'stu', 'PGSC0003DMG402028300' => 'stu', 'Phvul.001G219300' => 'pvu', 'Phvul.007G056000' => 'pvu', 'Phvul.007G208000' => 'pvu', 'Phvul.008G119500' => 'pvu', 'Phvul.010G011200' => 'pvu', 'Phvul.010G014800' => 'pvu', 'Phvul.011G062900' => 'pvu', 'Phvul.L007043' => 'pvu', 'Potri.001G242300' => 'ptr', 'Potri.002G185300' => 'ptr', 'Potri.006G086900' => 'ptr', 'Potri.008G151700' => 'ptr', 'Potri.009G033500' => 'ptr', 'Potri.010G089300' => 'ptr', 'Potri.014G110800' => 'ptr', 'Pp3c27_8130' => 'ppa', 'Pp3c6_27410' => 'ppa', 'PRCOL_00001659' => 'pco', 'PRCOL_00001927' => 'pco', 'PRCOL_00003649' => 'pco', 'Prupe.1G011600' => 'ppe', 'Prupe.3G000800' => 'ppe', 'Prupe.3G001100' => 'ppe', 'Prupe.6G072700' => 'ppe', 'Prupe.6G072800' => 'ppe', 'Prupe.6G257300' => 'ppe', 'Prupe.8G033000' => 'ppe', 'Psat0s2633g0080' => 'psa', 'Psat0s3396g0080' => 'psa', 'Psat0s3396g0200' => 'psa', 'Psat3g139080' => 'psa', 'Psat5g285080' => 'psa', 'Psat6g157760' => 'psa', 'Psat6g208440' => 'psa', 'Psat7g215320' => 'psa', 'Psat7g215400' => 'psa', 'Psat7g235600' => 'psa', 'Psat7g235760' => 'psa', 'PSO063G4603' => 'pso', 'PSO210G0182' => 'pso', 'PSO210G0196' => 'pso', 'PSO339G0394' => 'pso', 'PSO339G4127' => 'pso', 'PSO513G0064' => 'pso', 'PSO761G0079' => 'pso', 'QL01p031003' => 'qlo', 'QL01p031078' => 'qlo', 'QL06p003004' => 'qlo', 'QL07p048731' => 'qlo', 'QL09p037427' => 'qlo', 'RcHm_v2.0_Chr3g0466361' => 'rch', 'RcHm_v2.0_Chr3g0485571' => 'rch', 'RcHm_v2.0_Chr4g0416551' => 'rch', 'RcHm_v2.0_Chr5g0065831' => 'rch', 'Rhsim01G0230500' => 'rsi', 'Rhsim05G0194000' => 'rsi', 'Rhsim08G0250400' => 'rsi', 'Sabra02G0131000' => 'sbr', 'Sabra06G0066300' => 'sbr', 'Sabra08G0115500' => 'sbr', 'Sabra09G0023900' => 'sbr', 'Sabra10G0054000' => 'sbr', 'Sabra14G0081500' => 'sbr', 'Sabra16G0147100' => 'sbr', 'SalBow2G2957' => 'sbo', 'SalBow4G3320' => 'sbo', 'SalBow8G1894' => 'sbo', 'Sc07g0007950' => 'sci', 'Sc12g0001360' => 'sci', 'Sc13g0004330' => 'sci', 'Sc20g0005010' => 'sci', 'Sed0000361' => 'sed', 'Sed0001706' => 'sed', 'Sed0002422' => 'sed', 'Sed0004029' => 'sed', 'Sed0004602' => 'sed', 'Sed0004943' => 'sed', 'Sed0008646' => 'sed', 'Sed0023313' => 'sed', 'Sed0024843' => 'sed', 'SEGI_00081' => 'sgi', 'SEGI_00947' => 'sgi', 'SEGI_04046' => 'sgi', 'SEGI_06880' => 'sgi', 'SEGI_09736' => 'sgi', 'SEGI_12741' => 'sgi', 'SEGI_14530' => 'sgi', 'SEGI_20705' => 'sgi', 'SEGI_26088' => 'sgi', 'SEGI_28323' => 'sgi', 'SEGI_33343' => 'sgi', 'SGA_v2.0_scaffold126G33775' => 'sas', 'SGA_v2.0_scaffold2G01337' => 'sas', 'SGA_v2.0_scaffold38G15006' => 'sas', 'SGA_v2.0_scaffold39G15264' => 'sas', 'SGA_v2.0_scaffold453G51880' => 'sas', 'SHI12696' => 'shi', 'SMO367G1096' => 'smo', 'Solyc01g068630.3' => 'sly', 'Solyc05g011880.3' => 'sly', 'Solyc06g076300.3' => 'sly', 'Solyc09g010940.4' => 'sly', 'Solyc09g075890.3' => 'sly', 'Sopen01g030560' => 'spe', 'Sopen05g006630' => 'spe', 'Sopen06g032720' => 'spe', 'Sopen09g005660' => 'spe', 'Sopen09g030690' => 'spe', 'Sp4g14540' => 'spa', 'Sp4g20030' => 'spa', 'Sp5g01320' => 'spa', 'Sp6g21170' => 'spa', 'Sp6g21180' => 'spa', 'Sp6g21190' => 'spa', 'Sp6g40220' => 'spa', 'TAR362G0122' => 'tar', 'TAR362G1338' => 'tar', 'TAR369G0590' => 'tar', 'TAR371G0824' => 'tar', 'TAR622G1429' => 'tar', 'TAR623G0734' => 'tar', 'TAR625G0441' => 'tar', 'TAR629G0976' => 'tar', 'TAR633G1195' => 'tar', 'TAR636G2660' => 'tar', 'THA.LOC104799440' => 'tha', 'THA.LOC104800966' => 'tha', 'THA.LOC104806559' => 'tha', 'THA.LOC104810765' => 'tha', 'THA.LOC104816266' => 'tha', 'THA.LOC104817419' => 'tha', 'THA.LOC104827021' => 'tha', 'Thecc.01G327400' => 'tca', 'Thecc.04G229200' => 'tca', 'Thecc.05G037400' => 'tca', 'Thecc.09G318600' => 'tca', 'Thecc.09G318700' => 'tca', 'Thhalv10006238m.g' => 'esa', 'Thhalv10014321m.g' => 'esa', 'Thhalv10014335m.g' => 'esa', 'Thhalv10015826m.g' => 'esa', 'Thhalv10017107m.g' => 'esa', 'Thhalv10017180m.g' => 'esa', 'Thhalv10029339m.g' => 'esa', 'TPR.G1699' => 'tpr', 'TPR.G23609' => 'tpr', 'TPR.G3081' => 'tpr', 'TPR.G40397' => 'tpr', 'TPR.G5522' => 'tpr', 'TPR.G5618' => 'tpr', 'TPR.G5626' => 'tpr', 'TWI09G1632' => 'twi', 'TWI23G1230' => 'twi', 'TWI53G1064' => 'twi', 'TWI59G0751' => 'twi', 'TWI74G0947' => 'twi', 'TWI77G0337' => 'twi', 'TWI79G1254' => 'twi', 'unitig_0.g2341' => 'ugi', 'unitig_26.g10006' => 'ugi', 'unitig_26.g10008' => 'ugi', 'unitig_26.g9192' => 'ugi', 'vmacro14547' => 'vma', 'vmacro15333' => 'vma', 'vmacro18743' => 'vma', 'vmacro20166' => 'vma', 'VMungo0331G0523' => 'vmu', 'VMungo0331G1202' => 'vmu', 'VMungo0720G1228' => 'vmu', 'VMungo0720G1514' => 'vmu', 'VMungo1080G0169' => 'vmu', 'VMungo1127G1475' => 'vmu', 'VMungo1383G1208' => 'vmu', 'VMungo1383G1698' => 'vmu', 'Zm00001eb012270' => 'zma', 'Zm00001eb054100' => 'zma', 'Zm00001eb063350' => 'zma', 'Zm00001eb328560' => 'zma', 'Zm00001eb342820' => 'zma', 'Zm00001eb362210' => 'zma', 'Zm00001eb397730' => 'zma', 'Zm00001eb399750' => 'zma' ) $gf_id = 'HOM05D000959' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000959' ) $data_identifier = 'HOM05D000959' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 5, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 5, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 10, 'mbi' => (int) 3, 'mco' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 2, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 3, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 11, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399750' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000959', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '622', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p07100' => 'bna', 'A03p11720' => 'bna', 'A05p08300' => 'bna', 'A05p13380' => 'bna', 'A09p54130' => 'bna', 'A10p16690' => 'bna', 'A10p16700' => 'bna', 'A10p33390' => 'bna', 'Aa31LG10G16020' => 'aar', 'Aa31LG1G11810' => 'aar', 'Aa31LG1G11830' => 'aar', 'Aa31LG1G22510' => 'aar', 'Aa31LG5G4890' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5793' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2310' => 'aag', 'Actinidia08499' => 'ach', 'Actinidia11262' => 'ach', 'Actinidia23926' => 'ach', 'Actinidia34420' => 'ach', 'Actinidia36970' => 'ach', 'Ah.02g111220' => 'amhyb', 'Ah.15g097750' => 'amhyb', 'AL4G27500' => 'aly', 'AL6G11470' => 'aly', 'AL8G35950' => 'aly', 'AL8G35960' => 'aly', 'AL8G35970' => 'aly', 'Aqoxy1G00912' => 'aox', 'Aqoxy2G02253' => 'aox', 'Aqoxy2G02411' => 'aox', 'Aqoxy5G00485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BZ66YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K8ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM4FUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6BF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HFV7XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25JBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0YNNV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MAKK6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P70IT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP2Z6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V61LZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YWP64R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3S9AI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7PGHH' => 'arhy', 'AT2G32150' => 'ath', 'AT3G62040' => 'ath', 'AT5G02230' => 'ath', 'AT5G59480' => 'ath', 'AT5G59490' => 'ath', 'ATR0332G060' => 'atr', 'ATR0559G190' => 'atr', 'ATR0693G294' => 'atr', 'Atru.chr3.3975' => 'acertr', 'Atru.chr3.3976' => 'acertr', 'Atru.chr3.3977' => 'acertr', 'Atru.chr4.2498' => 'acertr', 'Atru.chr5.838' => 'acertr', 'Atru.chr8.1990' => 'acertr', 'Atru.chr8.1991' => 'acertr', 'Atru.chr8.1992' => 'acertr', 'AUR62001759' => 'cqu', 'AUR62009545' => 'cqu', 'AUR62010474' => 'cqu', 'AUR62025820' => 'cqu', 'AUR62030422' => 'cqu', 'AUR62033605' => 'cqu', 'AUR62038615' => 'cqu', 'AUR62041347' => 'cqu', 'BcaB01g04574' => 'bca', 'BcaB02g09263' => 'bca', 'BcaB02g10453' => 'bca', 'BcaB05g22513' => 'bca', 'BcaB08g36253' => 'bca', 'BcaB08g36254' => 'bca', 'BcaC01g06519' => 'bca', 'BcaC02g11889' => 'bca', 'BcaC03g14010' => 'bca', 'BcaC03g18439' => 'bca', 'BcaC04g19765' => 'bca', 'BcaC09g48432' => 'bca', 'BcaNung07302' => 'bca', 'BolC2t06040H' => 'bol', 'BolC2t07346H' => 'bol', 'BolC3t13817H' => 'bol', 'BolC4t22625H' => 'bol', 'BolC4t23297H' => 'bol', 'BolC8t51278H' => 'bol', 'BolC9t58050H' => 'bol', 'BolC9t58051H' => 'bol', 'BolC9t60163H' => 'bol', 'BraA02t04712Z' => 'bra', 'BraA02t05791Z' => 'bra', 'BraA03t10483Z' => 'bra', 'BraA05t19795Z' => 'bra', 'BraA05t20276Z' => 'bra', 'BraA09t40827Z' => 'bra', 'BraA10t43750Z' => 'bra', 'BraA10t43751Z' => 'bra', 'BraA10t45370Z' => 'bra', 'C02p00400' => 'bna', 'C02p12460' => 'bna', 'C03p13680' => 'bna', 'C04p10270' => 'bna', 'C04p17500' => 'bna', 'C08p37010' => 'bna', 'C09p51880' => 'bna', 'C09p51890' => 'bna', 'C09p74300' => 'bna', 'CAN.G179.26' => 'can', 'CAN.G3384.1' => 'can', 'CAN.G394.68' => 'can', 'CAN.G907.13' => 'can', 'CANSAT11G0012' => 'cansat', 'CANSAT25G1586' => 'cansat', 'CANSAT35G0735' => 'cansat', 'CANSAT54G0556' => 'cansat', 'CANSAT64G0356' => 'cansat', 'CANSAT78G2042' => 'cansat', 'CARHR125920' => 'chi', 'CARHR131910' => 'chi', 'CARHR172390' => 'chi', 'CARHR211140' => 'chi', 'CARHR285850' => 'chi', 'CARHR285860' => 'chi', 'Carub.0004s1347' => 'cru', 'Carub.0004s1960' => 'cru', 'Carub.0005s2880' => 'cru', 'Carub.0006s0107' => 'cru', 'Carub.0008s2015' => 'cru', 'Carub.0008s2016' => 'cru', 'Carub.0008s2017' => 'cru', 'Ca_01315_v3' => 'car', 'Ca_05063_v3' => 'car', 'Ca_10231_v3' => 'car', 'Ca_10913_v3' => 'car', 'Ca_19156_v3' => 'car', 'Ca_23644_v3' => 'car', 'Ca_26735_v3' => 'car', 'Cc01_g13130' => 'ccan', 'Cc02_g21690' => 'ccan', 'Cc03_g03600' => 'ccan', 'Cc06_g02510' => 'ccan', 'CDE02G1265' => 'cde', 'CDE05G0415' => 'cde', 'CDE08G1082' => 'cde', 'Cfa005780' => 'cfa', 'Cfa011522' => 'cfa', 'Cfa011523' => 'cfa', 'Cfa015627' => 'cfa', 'Cfa017359' => 'cfa', 'Ciclev10005687m.g' => 'ccl', 'Ciclev10012173m.g' => 'ccl', 'Ciclev10021621m.g' => 'ccl', 'Ciclev10028968m.g' => 'ccl', 'Ciclev10029907m.g' => 'ccl', 'CiPaw.01G164800' => 'cil', 'CiPaw.07G083700' => 'cil', 'CiPaw.07G127000' => 'cil', 'CiPaw.07G136900' => 'cil', 'CiPaw.08G081700' => 'cil', 'CiPaw.09G194600' => 'cil', 'CiPaw.10G146500' => 'cil', 'CiPaw.13G091500' => 'cil', 'CiPaw.13G091600' => 'cil', 'ClCG00G003390' => 'cla', 'ClCG01G007220' => 'cla', 'ClCG03G001370' => 'cla', 'ClCG04G008100' => 'cla', 'ClCG06G006110' => 'cla', 'ClCG06G006130' => 'cla', 'ClCG10G021210' => 'cla', 'COL.COLO4_07648' => 'col', 'COL.COLO4_07650' => 'col', 'COL.COLO4_07651' => 'col', 'COL.COLO4_14780' => 'col', 'COL.COLO4_18546' => 'col', 'COL.COLO4_18547' => 'col', 'COL.COLO4_23103' => 'col', 'COL.COLO4_30419' => 'col', 'COL.COLO4_34232' => 'col', 'Cpa.g.sc169.20' => 'cpa', 'Cpa.g.sc57.45' => 'cpa', 'Cpa.g.sc58.124' => 'cpa', 'Cpa.g.sc58.125' => 'cpa', 'Cpa.g.sc81.118' => 'cpa', 'Cpa.g.sc81.119' => 'cpa', 'Cre12.g524700' => 'cre', 'CsaV3_1G034430' => 'csa', 'CsaV3_1G034440' => 'csa', 'CsaV3_1G034450' => 'csa', 'CsaV3_3G034830' => 'csa', 'CsaV3_4G025090' => 'csa', 'CsaV3_5G018660' => 'csa', 'CsaV3_6G038160' => 'csa', 'CSS0003447' => 'camsi', 'CSS0017840' => 'camsi', 'CSS0019260' => 'camsi', 'CSS0040375' => 'camsi', 'CSS0042533' => 'camsi', 'DCAR_005960' => 'dca', 'DCAR_012104' => 'dca', 'DCAR_012105' => 'dca', 'DCAR_012293' => 'dca', 'DCAR_015632' => 'dca', 'DCAR_024602' => 'dca', 'DCAR_028752' => 'dca', 'Dinv06261' => 'din', 'Dinv13982' => 'din', 'Dinv17029' => 'din', 'Dinv18463' => 'din', 'Dinv33181' => 'din', 'Dinv35585' => 'din', 'Dinv37161' => 'din', 'Dinv42977' => 'din', 'Dinv43122' => 'din', 'Dinv44517' => 'din', 'Duzib093G0256' => 'dzi', 'Duzib106G1254' => 'dzi', 'Duzib128G1789' => 'dzi', 'Duzib133G0633' => 'dzi', 'Duzib138G0510' => 'dzi', 'Duzib150G1084' => 'dzi', 'Duzib168G0488' => 'dzi', 'Duzib168G1523' => 'dzi', 'Duzib170G0133' => 'dzi', 'ECA234G1433' => 'eca', 'ECA236G1432' => 'eca', 'ECA236G2256' => 'eca', 'ECA236G2365' => 'eca', 'ECA236G4830' => 'eca', 'ECA248G1505' => 'eca', 'EL10Ac3g06431' => 'bvu', 'EL10Ac5g12577' => 'bvu', 'EL10Ac6g13533' => 'bvu', 'EL10Ac7g16045' => 'bvu', 'Eucgr.A01281' => 'egr', 'Eucgr.B02326' => 'egr', 'Eucgr.H03532' => 'egr', 'Eucgr.K00553' => 'egr', 'Eucgr.K03116' => 'egr', 'FAN02G3963' => 'fan', 'FAN05G0438' => 'fan', 'FAN09G2434' => 'fan', 'FAN12G3984' => 'fan', 'FAN14G0798' => 'fan', 'FAN17G0652' => 'fan', 'FAN19G1988' => 'fan', 'FAN22G0632' => 'fan', 'FAN23G0387' => 'fan', 'FAN26G1323' => 'fan', 'FAN28G0666' => 'fan', 'FvH4_1g26080' => 'fve', 'FvH4_3g36780' => 'fve', 'FvH4_4g15270' => 'fve', 'FvH4_6g13490' => 'fve', 'Glyma.01G098700' => 'gma', 'Glyma.03G065900' => 'gma', 'Glyma.03G073754' => 'gma', 'Glyma.03G073758' => 'gma', 'Glyma.03G083200' => 'gma', 'Glyma.03G225500' => 'gma', 'Glyma.05G037766' => 'gma', 'Glyma.07G133500' => 'gma', 'Glyma.10G139400' => 'gma', 'Glyma.10G248900' => 'gma', 'Glyma.11G137800' => 'gma', 'Glyma.12G061300' => 'gma', 'Glyma.13G337900' => 'gma', 'Glyma.15G036600' => 'gma', 'Glyma.18G182800' => 'gma', 'Glyma.19G222500' => 'gma', 'Glyma.20G144800' => 'gma', 'Gohir.A01G222000' => 'ghi', 'Gohir.A03G044000' => 'ghi', 'Gohir.A03G044100' => 'ghi', 'Gohir.A04G083100' => 'ghi', 'Gohir.A07G127200' => 'ghi', 'Gohir.A07G132400' => 'ghi', 'Gohir.A08G000700' => 'ghi', 'Gohir.A11G327300' => 'ghi', 'Gohir.D01G211500' => 'ghi', 'Gohir.D03G123400' => 'ghi', 'Gohir.D03G123500' => 'ghi', 'Gohir.D04G121800' => 'ghi', 'Gohir.D07G131500' => 'ghi', 'Gohir.D07G136600' => 'ghi', 'Gohir.D08G011600' => 'ghi', 'Gohir.D11G346200' => 'ghi', 'Gorai.001G142800' => 'gra', 'Gorai.001G148700' => 'gra', 'Gorai.002G257300' => 'gra', 'Gorai.003G130000' => 'gra', 'Gorai.003G130100' => 'gra', 'Gorai.004G005300' => 'gra', 'Gorai.007G376500' => 'gra', 'Gorai.012G104700' => 'gra', 'GSVIVG01017946001' => 'vvi', 'GSVIVG01024928001' => 'vvi', 'GSVIVG01028227001' => 'vvi', 'GSVIVG01034151001' => 'vvi', 'HanXRQChr05g0135031' => 'han', 'HanXRQChr05g0135041' => 'han', 'HanXRQChr05g0140021' => 'han', 'HanXRQChr06g0178981' => 'han', 'HanXRQChr07g0188251' => 'han', 'HanXRQChr08g0235311' => 'han', 'HanXRQChr09g0271011' => 'han', 'HanXRQChr10g0293321' => 'han', 'HanXRQChr13g0388171' => 'han', 'Haze_00916' => 'cav', 'Haze_05063' => 'cav', 'Haze_20814' => 'cav', 'Haze_24128' => 'cav', 'Hma1.2p1_0745F.1_g212010' => 'hma', 'Hma1.2p1_0757F.1_g213260' => 'hma', 'Hma1.2p1_0936F.1_g238840' => 'hma', 'Hma1.2p1_1735F.1_g299890' => 'hma', 'Hma1.2p1_1861F.1_g305685' => 'hma', 'HPP92_003397' => 'vpl', 'HPP92_012597' => 'vpl', 'HPP92_015520' => 'vpl', 'HPP92_015539' => 'vpl', 'HPP92_020373' => 'vpl', 'Hund04938' => 'sun', 'Hund10677' => 'sun', 'Hund11033' => 'sun', 'Hund12155' => 'sun', 'Lalb_Chr01g0022551' => 'lal', 'Lalb_Chr03g0042341' => 'lal', 'Lalb_Chr07g0192931' => 'lal', 'Lalb_Chr12g0209551' => 'lal', 'Lalb_Chr19g0125251' => 'lal', 'Lalb_Chr19g0137891' => 'lal', 'Lalb_Chr21g0304641' => 'lal', 'Lalb_Chr21g0309881' => 'lal', 'Lj1A5T12' => 'lonja', 'Lj1C148G10' => 'lonja', 'Lj2A93T83' => 'lonja', 'Lj3A738G68' => 'lonja', 'Lj3C966T1' => 'lonja', 'Lj3g0018958' => 'lja', 'Lj3g0021831' => 'lja', 'Lj3g0025443' => 'lja', 'Lj4g0026809' => 'lja', 'Lj5g0012558' => 'lja', 'Lj5g0021586' => 'lja', 'Lsat_1_v5_gn_5_156840' => 'lsa', 'Lsat_1_v5_gn_8_73460' => 'lsa', 'Lsat_1_v5_gn_8_73481' => 'lsa', 'Lsat_1_v5_gn_9_31601' => 'lsa', 'Lsat_1_v5_gn_9_77320' => 'lsa', 'Manes.01G171300' => 'mes', 'Manes.01G171400' => 'mes', 'Manes.01G236100' => 'mes', 'Manes.02G130500' => 'mes', 'Manes.02G130600' => 'mes', 'Manes.03G180200' => 'mes', 'Manes.05G007000' => 'mes', 'Manes.08G084400' => 'mes', 'Manes.09G092600' => 'mes', 'Manes.15G027900' => 'mes', 'MBI04_g40948_MAGBIO' => 'mbi', 'MBI14_g12123_MAGBIO' => 'mbi', 'MBI18_g28915_MAGBIO' => 'mbi', 'MCO09G053' => 'mco', 'MCO11G782' => 'mco', 'MCO15G215' => 'mco', 'MD03G1088500' => 'mdo', 'MD03G1088600' => 'mdo', 'MD04G1130800' => 'mdo', 'MD09G1291700' => 'mdo', 'MD11G1097500' => 'mdo', 'MD11G1097600' => 'mdo', 'MD12G1143900' => 'mdo', 'MD13G1191400' => 'mdo', 'MD16G1191500' => 'mdo', 'Medtr1g085570' => 'mtr', 'Medtr1g104610' => 'mtr', 'Medtr2g097520' => 'mtr', 'Medtr4g021800' => 'mtr', 'Medtr4g021825' => 'mtr', 'Medtr4g064270' => 'mtr', 'Medtr4g064380' => 'mtr', 'Medtr7g062150' => 'mtr', 'MELO3C003138.2' => 'cme', 'MELO3C005187.2' => 'cme', 'MELO3C009252.2' => 'cme', 'MELO3C014481.2' => 'cme', 'MELO3C020616.2' => 'cme', 'MELO3C020617.2' => 'cme', 'MELO3C020618.2' => 'cme', 'Migut.G00328' => 'egut', 'Migut.J00320' => 'egut', 'Migut.L01000' => 'egut', 'Migut.L01953' => 'egut', 'MSTRG.10253' => 'ama', 'MSTRG.19077' => 'ama', 'MSTRG.26780' => 'ama', 'MSTRG.4023' => 'ama', 'MSTRG.5655' => 'ama', 'MSTRG.9992' => 'ama', 'Nitab4.5_0000043g0310' => 'nta', 'Nitab4.5_0000463g0080' => 'nta', 'Nitab4.5_0000705g0170' => 'nta', 'Nitab4.5_0001326g0060' => 'nta', 'Nitab4.5_0001628g0030' => 'nta', 'Nitab4.5_0002103g0110' => 'nta', 'Nitab4.5_0002946g0030' => 'nta', 'Nitab4.5_0004639g0030' => 'nta', 'Nn2g11149' => 'nnu', 'Nn2g13389' => 'nnu', 'Nn4g25326' => 'nnu', 'Nn4g26290' => 'nnu', 'Nn5g29865' => 'nnu', 'Oeu004163.1' => 'oeu', 'Oeu006901.1' => 'oeu', 'Oeu010096.1' => 'oeu', 'Oeu024340.1' => 'oeu', 'Oeu048369.1' => 'oeu', 'Os01g0973000' => 'osa', 'Os03g0273800' => 'osa', 'Os03g0701200' => 'osa', 'Os03g0834050' => 'osa', 'Os07g0634400' => 'osa', 'Peaxi162Scf00092g01414' => 'pax', 'Peaxi162Scf00165g00818' => 'pax', 'Peaxi162Scf00309g00516' => 'pax', 'Peaxi162Scf00774g00218' => 'pax', 'PGR004G1824' => 'pgr', 'PGR004G2606' => 'pgr', 'PGR031G2716' => 'pgr', 'PGR102G2460' => 'pgr', 'PGR142G2599' => 'pgr', 'PGSC0003DMG400000843' => 'stu', 'PGSC0003DMG400008829' => 'stu', 'PGSC0003DMG400030418' => 'stu', 'PGSC0003DMG400031834' => 'stu', 'PGSC0003DMG401028300' => 'stu', 'PGSC0003DMG402028300' => 'stu', 'Phvul.001G219300' => 'pvu', 'Phvul.007G056000' => 'pvu', 'Phvul.007G208000' => 'pvu', 'Phvul.008G119500' => 'pvu', 'Phvul.010G011200' => 'pvu', 'Phvul.010G014800' => 'pvu', 'Phvul.011G062900' => 'pvu', 'Phvul.L007043' => 'pvu', 'Potri.001G242300' => 'ptr', 'Potri.002G185300' => 'ptr', 'Potri.006G086900' => 'ptr', 'Potri.008G151700' => 'ptr', 'Potri.009G033500' => 'ptr', 'Potri.010G089300' => 'ptr', 'Potri.014G110800' => 'ptr', 'Pp3c27_8130' => 'ppa', 'Pp3c6_27410' => 'ppa', 'PRCOL_00001659' => 'pco', 'PRCOL_00001927' => 'pco', 'PRCOL_00003649' => 'pco', 'Prupe.1G011600' => 'ppe', 'Prupe.3G000800' => 'ppe', 'Prupe.3G001100' => 'ppe', 'Prupe.6G072700' => 'ppe', 'Prupe.6G072800' => 'ppe', 'Prupe.6G257300' => 'ppe', 'Prupe.8G033000' => 'ppe', 'Psat0s2633g0080' => 'psa', 'Psat0s3396g0080' => 'psa', 'Psat0s3396g0200' => 'psa', 'Psat3g139080' => 'psa', 'Psat5g285080' => 'psa', 'Psat6g157760' => 'psa', 'Psat6g208440' => 'psa', 'Psat7g215320' => 'psa', 'Psat7g215400' => 'psa', 'Psat7g235600' => 'psa', 'Psat7g235760' => 'psa', 'PSO063G4603' => 'pso', 'PSO210G0182' => 'pso', 'PSO210G0196' => 'pso', 'PSO339G0394' => 'pso', 'PSO339G4127' => 'pso', 'PSO513G0064' => 'pso', 'PSO761G0079' => 'pso', 'QL01p031003' => 'qlo', 'QL01p031078' => 'qlo', 'QL06p003004' => 'qlo', 'QL07p048731' => 'qlo', 'QL09p037427' => 'qlo', 'RcHm_v2.0_Chr3g0466361' => 'rch', 'RcHm_v2.0_Chr3g0485571' => 'rch', 'RcHm_v2.0_Chr4g0416551' => 'rch', 'RcHm_v2.0_Chr5g0065831' => 'rch', 'Rhsim01G0230500' => 'rsi', 'Rhsim05G0194000' => 'rsi', 'Rhsim08G0250400' => 'rsi', 'Sabra02G0131000' => 'sbr', 'Sabra06G0066300' => 'sbr', 'Sabra08G0115500' => 'sbr', 'Sabra09G0023900' => 'sbr', 'Sabra10G0054000' => 'sbr', 'Sabra14G0081500' => 'sbr', 'Sabra16G0147100' => 'sbr', 'SalBow2G2957' => 'sbo', 'SalBow4G3320' => 'sbo', 'SalBow8G1894' => 'sbo', 'Sc07g0007950' => 'sci', 'Sc12g0001360' => 'sci', 'Sc13g0004330' => 'sci', 'Sc20g0005010' => 'sci', 'Sed0000361' => 'sed', 'Sed0001706' => 'sed', 'Sed0002422' => 'sed', 'Sed0004029' => 'sed', 'Sed0004602' => 'sed', 'Sed0004943' => 'sed', 'Sed0008646' => 'sed', 'Sed0023313' => 'sed', 'Sed0024843' => 'sed', 'SEGI_00081' => 'sgi', 'SEGI_00947' => 'sgi', 'SEGI_04046' => 'sgi', 'SEGI_06880' => 'sgi', 'SEGI_09736' => 'sgi', 'SEGI_12741' => 'sgi', 'SEGI_14530' => 'sgi', 'SEGI_20705' => 'sgi', 'SEGI_26088' => 'sgi', 'SEGI_28323' => 'sgi', 'SEGI_33343' => 'sgi', 'SGA_v2.0_scaffold126G33775' => 'sas', 'SGA_v2.0_scaffold2G01337' => 'sas', 'SGA_v2.0_scaffold38G15006' => 'sas', 'SGA_v2.0_scaffold39G15264' => 'sas', 'SGA_v2.0_scaffold453G51880' => 'sas', 'SHI12696' => 'shi', 'SMO367G1096' => 'smo', 'Solyc01g068630.3' => 'sly', 'Solyc05g011880.3' => 'sly', 'Solyc06g076300.3' => 'sly', 'Solyc09g010940.4' => 'sly', 'Solyc09g075890.3' => 'sly', 'Sopen01g030560' => 'spe', 'Sopen05g006630' => 'spe', 'Sopen06g032720' => 'spe', 'Sopen09g005660' => 'spe', 'Sopen09g030690' => 'spe', 'Sp4g14540' => 'spa', 'Sp4g20030' => 'spa', 'Sp5g01320' => 'spa', 'Sp6g21170' => 'spa', 'Sp6g21180' => 'spa', 'Sp6g21190' => 'spa', 'Sp6g40220' => 'spa', 'TAR362G0122' => 'tar', 'TAR362G1338' => 'tar', 'TAR369G0590' => 'tar', 'TAR371G0824' => 'tar', 'TAR622G1429' => 'tar', 'TAR623G0734' => 'tar', 'TAR625G0441' => 'tar', 'TAR629G0976' => 'tar', 'TAR633G1195' => 'tar', 'TAR636G2660' => 'tar', 'THA.LOC104799440' => 'tha', 'THA.LOC104800966' => 'tha', 'THA.LOC104806559' => 'tha', 'THA.LOC104810765' => 'tha', 'THA.LOC104816266' => 'tha', 'THA.LOC104817419' => 'tha', 'THA.LOC104827021' => 'tha', 'Thecc.01G327400' => 'tca', 'Thecc.04G229200' => 'tca', 'Thecc.05G037400' => 'tca', 'Thecc.09G318600' => 'tca', 'Thecc.09G318700' => 'tca', 'Thhalv10006238m.g' => 'esa', 'Thhalv10014321m.g' => 'esa', 'Thhalv10014335m.g' => 'esa', 'Thhalv10015826m.g' => 'esa', 'Thhalv10017107m.g' => 'esa', 'Thhalv10017180m.g' => 'esa', 'Thhalv10029339m.g' => 'esa', 'TPR.G1699' => 'tpr', 'TPR.G23609' => 'tpr', 'TPR.G3081' => 'tpr', 'TPR.G40397' => 'tpr', 'TPR.G5522' => 'tpr', 'TPR.G5618' => 'tpr', 'TPR.G5626' => 'tpr', 'TWI09G1632' => 'twi', 'TWI23G1230' => 'twi', 'TWI53G1064' => 'twi', 'TWI59G0751' => 'twi', 'TWI74G0947' => 'twi', 'TWI77G0337' => 'twi', 'TWI79G1254' => 'twi', 'unitig_0.g2341' => 'ugi', 'unitig_26.g10006' => 'ugi', 'unitig_26.g10008' => 'ugi', 'unitig_26.g9192' => 'ugi', 'vmacro14547' => 'vma', 'vmacro15333' => 'vma', 'vmacro18743' => 'vma', 'vmacro20166' => 'vma', 'VMungo0331G0523' => 'vmu', 'VMungo0331G1202' => 'vmu', 'VMungo0720G1228' => 'vmu', 'VMungo0720G1514' => 'vmu', 'VMungo1080G0169' => 'vmu', 'VMungo1127G1475' => 'vmu', 'VMungo1383G1208' => 'vmu', 'VMungo1383G1698' => 'vmu', 'Zm00001eb012270' => 'zma', 'Zm00001eb054100' => 'zma', 'Zm00001eb063350' => 'zma', 'Zm00001eb328560' => 'zma', 'Zm00001eb342820' => 'zma', 'Zm00001eb362210' => 'zma', 'Zm00001eb397730' => 'zma', 'Zm00001eb399750' => 'zma' ), 'gf_id' => 'HOM05D000959', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000959' ), 'data_identifier' => 'HOM05D000959', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000959', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '622', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p07100' => 'bna', 'A03p11720' => 'bna', 'A05p08300' => 'bna', 'A05p13380' => 'bna', 'A09p54130' => 'bna', 'A10p16690' => 'bna', 'A10p16700' => 'bna', 'A10p33390' => 'bna', 'Aa31LG10G16020' => 'aar', 'Aa31LG1G11810' => 'aar', 'Aa31LG1G11830' => 'aar', 'Aa31LG1G22510' => 'aar', 'Aa31LG5G4890' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5793' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2310' => 'aag', 'Actinidia08499' => 'ach', 'Actinidia11262' => 'ach', 'Actinidia23926' => 'ach', 'Actinidia34420' => 'ach', 'Actinidia36970' => 'ach', 'Ah.02g111220' => 'amhyb', 'Ah.15g097750' => 'amhyb', 'AL4G27500' => 'aly', 'AL6G11470' => 'aly', 'AL8G35950' => 'aly', 'AL8G35960' => 'aly', 'AL8G35970' => 'aly', 'Aqoxy1G00912' => 'aox', 'Aqoxy2G02253' => 'aox', 'Aqoxy2G02411' => 'aox', 'Aqoxy5G00485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BZ66YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K8ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM4FUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6BF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HFV7XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25JBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0YNNV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MAKK6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P70IT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP2Z6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V61LZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YWP64R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3S9AI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7PGHH' => 'arhy', 'AT2G32150' => 'ath', 'AT3G62040' => 'ath', 'AT5G02230' => 'ath', 'AT5G59480' => 'ath', 'AT5G59490' => 'ath', 'ATR0332G060' => 'atr', 'ATR0559G190' => 'atr', 'ATR0693G294' => 'atr', 'Atru.chr3.3975' => 'acertr', 'Atru.chr3.3976' => 'acertr', 'Atru.chr3.3977' => 'acertr', 'Atru.chr4.2498' => 'acertr', 'Atru.chr5.838' => 'acertr', 'Atru.chr8.1990' => 'acertr', 'Atru.chr8.1991' => 'acertr', 'Atru.chr8.1992' => 'acertr', 'AUR62001759' => 'cqu', 'AUR62009545' => 'cqu', 'AUR62010474' => 'cqu', 'AUR62025820' => 'cqu', 'AUR62030422' => 'cqu', 'AUR62033605' => 'cqu', 'AUR62038615' => 'cqu', 'AUR62041347' => 'cqu', 'BcaB01g04574' => 'bca', 'BcaB02g09263' => 'bca', 'BcaB02g10453' => 'bca', 'BcaB05g22513' => 'bca', 'BcaB08g36253' => 'bca', 'BcaB08g36254' => 'bca', 'BcaC01g06519' => 'bca', 'BcaC02g11889' => 'bca', 'BcaC03g14010' => 'bca', 'BcaC03g18439' => 'bca', 'BcaC04g19765' => 'bca', 'BcaC09g48432' => 'bca', 'BcaNung07302' => 'bca', 'BolC2t06040H' => 'bol', 'BolC2t07346H' => 'bol', 'BolC3t13817H' => 'bol', 'BolC4t22625H' => 'bol', 'BolC4t23297H' => 'bol', 'BolC8t51278H' => 'bol', 'BolC9t58050H' => 'bol', 'BolC9t58051H' => 'bol', 'BolC9t60163H' => 'bol', 'BraA02t04712Z' => 'bra', 'BraA02t05791Z' => 'bra', 'BraA03t10483Z' => 'bra', 'BraA05t19795Z' => 'bra', 'BraA05t20276Z' => 'bra', 'BraA09t40827Z' => 'bra', 'BraA10t43750Z' => 'bra', 'BraA10t43751Z' => 'bra', 'BraA10t45370Z' => 'bra', 'C02p00400' => 'bna', 'C02p12460' => 'bna', 'C03p13680' => 'bna', 'C04p10270' => 'bna', 'C04p17500' => 'bna', 'C08p37010' => 'bna', 'C09p51880' => 'bna', 'C09p51890' => 'bna', 'C09p74300' => 'bna', 'CAN.G179.26' => 'can', 'CAN.G3384.1' => 'can', 'CAN.G394.68' => 'can', 'CAN.G907.13' => 'can', 'CANSAT11G0012' => 'cansat', 'CANSAT25G1586' => 'cansat', 'CANSAT35G0735' => 'cansat', 'CANSAT54G0556' => 'cansat', 'CANSAT64G0356' => 'cansat', 'CANSAT78G2042' => 'cansat', 'CARHR125920' => 'chi', 'CARHR131910' => 'chi', 'CARHR172390' => 'chi', 'CARHR211140' => 'chi', 'CARHR285850' => 'chi', 'CARHR285860' => 'chi', 'Carub.0004s1347' => 'cru', 'Carub.0004s1960' => 'cru', 'Carub.0005s2880' => 'cru', 'Carub.0006s0107' => 'cru', 'Carub.0008s2015' => 'cru', 'Carub.0008s2016' => 'cru', 'Carub.0008s2017' => 'cru', 'Ca_01315_v3' => 'car', 'Ca_05063_v3' => 'car', 'Ca_10231_v3' => 'car', 'Ca_10913_v3' => 'car', 'Ca_19156_v3' => 'car', 'Ca_23644_v3' => 'car', 'Ca_26735_v3' => 'car', 'Cc01_g13130' => 'ccan', 'Cc02_g21690' => 'ccan', 'Cc03_g03600' => 'ccan', 'Cc06_g02510' => 'ccan', 'CDE02G1265' => 'cde', 'CDE05G0415' => 'cde', 'CDE08G1082' => 'cde', 'Cfa005780' => 'cfa', 'Cfa011522' => 'cfa', 'Cfa011523' => 'cfa', 'Cfa015627' => 'cfa', 'Cfa017359' => 'cfa', 'Ciclev10005687m.g' => 'ccl', 'Ciclev10012173m.g' => 'ccl', 'Ciclev10021621m.g' => 'ccl', 'Ciclev10028968m.g' => 'ccl', 'Ciclev10029907m.g' => 'ccl', 'CiPaw.01G164800' => 'cil', 'CiPaw.07G083700' => 'cil', 'CiPaw.07G127000' => 'cil', 'CiPaw.07G136900' => 'cil', 'CiPaw.08G081700' => 'cil', 'CiPaw.09G194600' => 'cil', 'CiPaw.10G146500' => 'cil', 'CiPaw.13G091500' => 'cil', 'CiPaw.13G091600' => 'cil', 'ClCG00G003390' => 'cla', 'ClCG01G007220' => 'cla', 'ClCG03G001370' => 'cla', 'ClCG04G008100' => 'cla', 'ClCG06G006110' => 'cla', 'ClCG06G006130' => 'cla', 'ClCG10G021210' => 'cla', 'COL.COLO4_07648' => 'col', 'COL.COLO4_07650' => 'col', 'COL.COLO4_07651' => 'col', 'COL.COLO4_14780' => 'col', 'COL.COLO4_18546' => 'col', 'COL.COLO4_18547' => 'col', 'COL.COLO4_23103' => 'col', 'COL.COLO4_30419' => 'col', 'COL.COLO4_34232' => 'col', 'Cpa.g.sc169.20' => 'cpa', 'Cpa.g.sc57.45' => 'cpa', 'Cpa.g.sc58.124' => 'cpa', 'Cpa.g.sc58.125' => 'cpa', 'Cpa.g.sc81.118' => 'cpa', 'Cpa.g.sc81.119' => 'cpa', 'Cre12.g524700' => 'cre', 'CsaV3_1G034430' => 'csa', 'CsaV3_1G034440' => 'csa', 'CsaV3_1G034450' => 'csa', 'CsaV3_3G034830' => 'csa', 'CsaV3_4G025090' => 'csa', 'CsaV3_5G018660' => 'csa', 'CsaV3_6G038160' => 'csa', 'CSS0003447' => 'camsi', 'CSS0017840' => 'camsi', 'CSS0019260' => 'camsi', 'CSS0040375' => 'camsi', 'CSS0042533' => 'camsi', 'DCAR_005960' => 'dca', 'DCAR_012104' => 'dca', 'DCAR_012105' => 'dca', 'DCAR_012293' => 'dca', 'DCAR_015632' => 'dca', 'DCAR_024602' => 'dca', 'DCAR_028752' => 'dca', 'Dinv06261' => 'din', 'Dinv13982' => 'din', 'Dinv17029' => 'din', 'Dinv18463' => 'din', 'Dinv33181' => 'din', 'Dinv35585' => 'din', 'Dinv37161' => 'din', 'Dinv42977' => 'din', 'Dinv43122' => 'din', 'Dinv44517' => 'din', 'Duzib093G0256' => 'dzi', 'Duzib106G1254' => 'dzi', 'Duzib128G1789' => 'dzi', 'Duzib133G0633' => 'dzi', 'Duzib138G0510' => 'dzi', 'Duzib150G1084' => 'dzi', 'Duzib168G0488' => 'dzi', 'Duzib168G1523' => 'dzi', 'Duzib170G0133' => 'dzi', 'ECA234G1433' => 'eca', 'ECA236G1432' => 'eca', 'ECA236G2256' => 'eca', 'ECA236G2365' => 'eca', 'ECA236G4830' => 'eca', 'ECA248G1505' => 'eca', 'EL10Ac3g06431' => 'bvu', 'EL10Ac5g12577' => 'bvu', 'EL10Ac6g13533' => 'bvu', 'EL10Ac7g16045' => 'bvu', 'Eucgr.A01281' => 'egr', 'Eucgr.B02326' => 'egr', 'Eucgr.H03532' => 'egr', 'Eucgr.K00553' => 'egr', 'Eucgr.K03116' => 'egr', 'FAN02G3963' => 'fan', 'FAN05G0438' => 'fan', 'FAN09G2434' => 'fan', 'FAN12G3984' => 'fan', 'FAN14G0798' => 'fan', 'FAN17G0652' => 'fan', 'FAN19G1988' => 'fan', 'FAN22G0632' => 'fan', 'FAN23G0387' => 'fan', 'FAN26G1323' => 'fan', 'FAN28G0666' => 'fan', 'FvH4_1g26080' => 'fve', 'FvH4_3g36780' => 'fve', 'FvH4_4g15270' => 'fve', 'FvH4_6g13490' => 'fve', 'Glyma.01G098700' => 'gma', 'Glyma.03G065900' => 'gma', 'Glyma.03G073754' => 'gma', 'Glyma.03G073758' => 'gma', 'Glyma.03G083200' => 'gma', 'Glyma.03G225500' => 'gma', 'Glyma.05G037766' => 'gma', 'Glyma.07G133500' => 'gma', 'Glyma.10G139400' => 'gma', 'Glyma.10G248900' => 'gma', 'Glyma.11G137800' => 'gma', 'Glyma.12G061300' => 'gma', 'Glyma.13G337900' => 'gma', 'Glyma.15G036600' => 'gma', 'Glyma.18G182800' => 'gma', 'Glyma.19G222500' => 'gma', 'Glyma.20G144800' => 'gma', 'Gohir.A01G222000' => 'ghi', 'Gohir.A03G044000' => 'ghi', 'Gohir.A03G044100' => 'ghi', 'Gohir.A04G083100' => 'ghi', 'Gohir.A07G127200' => 'ghi', 'Gohir.A07G132400' => 'ghi', 'Gohir.A08G000700' => 'ghi', 'Gohir.A11G327300' => 'ghi', 'Gohir.D01G211500' => 'ghi', 'Gohir.D03G123400' => 'ghi', 'Gohir.D03G123500' => 'ghi', 'Gohir.D04G121800' => 'ghi', 'Gohir.D07G131500' => 'ghi', 'Gohir.D07G136600' => 'ghi', 'Gohir.D08G011600' => 'ghi', 'Gohir.D11G346200' => 'ghi', 'Gorai.001G142800' => 'gra', 'Gorai.001G148700' => 'gra', 'Gorai.002G257300' => 'gra', 'Gorai.003G130000' => 'gra', 'Gorai.003G130100' => 'gra', 'Gorai.004G005300' => 'gra', 'Gorai.007G376500' => 'gra', 'Gorai.012G104700' => 'gra', 'GSVIVG01017946001' => 'vvi', 'GSVIVG01024928001' => 'vvi', 'GSVIVG01028227001' => 'vvi', 'GSVIVG01034151001' => 'vvi', 'HanXRQChr05g0135031' => 'han', 'HanXRQChr05g0135041' => 'han', 'HanXRQChr05g0140021' => 'han', 'HanXRQChr06g0178981' => 'han', 'HanXRQChr07g0188251' => 'han', 'HanXRQChr08g0235311' => 'han', 'HanXRQChr09g0271011' => 'han', 'HanXRQChr10g0293321' => 'han', 'HanXRQChr13g0388171' => 'han', 'Haze_00916' => 'cav', 'Haze_05063' => 'cav', 'Haze_20814' => 'cav', 'Haze_24128' => 'cav', 'Hma1.2p1_0745F.1_g212010' => 'hma', 'Hma1.2p1_0757F.1_g213260' => 'hma', 'Hma1.2p1_0936F.1_g238840' => 'hma', 'Hma1.2p1_1735F.1_g299890' => 'hma', 'Hma1.2p1_1861F.1_g305685' => 'hma', 'HPP92_003397' => 'vpl', 'HPP92_012597' => 'vpl', 'HPP92_015520' => 'vpl', 'HPP92_015539' => 'vpl', 'HPP92_020373' => 'vpl', 'Hund04938' => 'sun', 'Hund10677' => 'sun', 'Hund11033' => 'sun', 'Hund12155' => 'sun', 'Lalb_Chr01g0022551' => 'lal', 'Lalb_Chr03g0042341' => 'lal', 'Lalb_Chr07g0192931' => 'lal', 'Lalb_Chr12g0209551' => 'lal', 'Lalb_Chr19g0125251' => 'lal', 'Lalb_Chr19g0137891' => 'lal', 'Lalb_Chr21g0304641' => 'lal', 'Lalb_Chr21g0309881' => 'lal', 'Lj1A5T12' => 'lonja', 'Lj1C148G10' => 'lonja', 'Lj2A93T83' => 'lonja', 'Lj3A738G68' => 'lonja', 'Lj3C966T1' => 'lonja', 'Lj3g0018958' => 'lja', 'Lj3g0021831' => 'lja', 'Lj3g0025443' => 'lja', 'Lj4g0026809' => 'lja', 'Lj5g0012558' => 'lja', 'Lj5g0021586' => 'lja', 'Lsat_1_v5_gn_5_156840' => 'lsa', 'Lsat_1_v5_gn_8_73460' => 'lsa', 'Lsat_1_v5_gn_8_73481' => 'lsa', 'Lsat_1_v5_gn_9_31601' => 'lsa', 'Lsat_1_v5_gn_9_77320' => 'lsa', 'Manes.01G171300' => 'mes', 'Manes.01G171400' => 'mes', 'Manes.01G236100' => 'mes', 'Manes.02G130500' => 'mes', 'Manes.02G130600' => 'mes', 'Manes.03G180200' => 'mes', 'Manes.05G007000' => 'mes', 'Manes.08G084400' => 'mes', 'Manes.09G092600' => 'mes', 'Manes.15G027900' => 'mes', 'MBI04_g40948_MAGBIO' => 'mbi', 'MBI14_g12123_MAGBIO' => 'mbi', 'MBI18_g28915_MAGBIO' => 'mbi', 'MCO09G053' => 'mco', 'MCO11G782' => 'mco', 'MCO15G215' => 'mco', 'MD03G1088500' => 'mdo', 'MD03G1088600' => 'mdo', 'MD04G1130800' => 'mdo', 'MD09G1291700' => 'mdo', 'MD11G1097500' => 'mdo', 'MD11G1097600' => 'mdo', 'MD12G1143900' => 'mdo', 'MD13G1191400' => 'mdo', 'MD16G1191500' => 'mdo', 'Medtr1g085570' => 'mtr', 'Medtr1g104610' => 'mtr', 'Medtr2g097520' => 'mtr', 'Medtr4g021800' => 'mtr', 'Medtr4g021825' => 'mtr', 'Medtr4g064270' => 'mtr', 'Medtr4g064380' => 'mtr', 'Medtr7g062150' => 'mtr', 'MELO3C003138.2' => 'cme', 'MELO3C005187.2' => 'cme', 'MELO3C009252.2' => 'cme', 'MELO3C014481.2' => 'cme', 'MELO3C020616.2' => 'cme', 'MELO3C020617.2' => 'cme', 'MELO3C020618.2' => 'cme', 'Migut.G00328' => 'egut', 'Migut.J00320' => 'egut', 'Migut.L01000' => 'egut', 'Migut.L01953' => 'egut', 'MSTRG.10253' => 'ama', 'MSTRG.19077' => 'ama', 'MSTRG.26780' => 'ama', 'MSTRG.4023' => 'ama', 'MSTRG.5655' => 'ama', 'MSTRG.9992' => 'ama', 'Nitab4.5_0000043g0310' => 'nta', 'Nitab4.5_0000463g0080' => 'nta', 'Nitab4.5_0000705g0170' => 'nta', 'Nitab4.5_0001326g0060' => 'nta', 'Nitab4.5_0001628g0030' => 'nta', 'Nitab4.5_0002103g0110' => 'nta', 'Nitab4.5_0002946g0030' => 'nta', 'Nitab4.5_0004639g0030' => 'nta', 'Nn2g11149' => 'nnu', 'Nn2g13389' => 'nnu', 'Nn4g25326' => 'nnu', 'Nn4g26290' => 'nnu', 'Nn5g29865' => 'nnu', 'Oeu004163.1' => 'oeu', 'Oeu006901.1' => 'oeu', 'Oeu010096.1' => 'oeu', 'Oeu024340.1' => 'oeu', 'Oeu048369.1' => 'oeu', 'Os01g0973000' => 'osa', 'Os03g0273800' => 'osa', 'Os03g0701200' => 'osa', 'Os03g0834050' => 'osa', 'Os07g0634400' => 'osa', 'Peaxi162Scf00092g01414' => 'pax', 'Peaxi162Scf00165g00818' => 'pax', 'Peaxi162Scf00309g00516' => 'pax', 'Peaxi162Scf00774g00218' => 'pax', 'PGR004G1824' => 'pgr', 'PGR004G2606' => 'pgr', 'PGR031G2716' => 'pgr', 'PGR102G2460' => 'pgr', 'PGR142G2599' => 'pgr', 'PGSC0003DMG400000843' => 'stu', 'PGSC0003DMG400008829' => 'stu', 'PGSC0003DMG400030418' => 'stu', 'PGSC0003DMG400031834' => 'stu', 'PGSC0003DMG401028300' => 'stu', 'PGSC0003DMG402028300' => 'stu', 'Phvul.001G219300' => 'pvu', 'Phvul.007G056000' => 'pvu', 'Phvul.007G208000' => 'pvu', 'Phvul.008G119500' => 'pvu', 'Phvul.010G011200' => 'pvu', 'Phvul.010G014800' => 'pvu', 'Phvul.011G062900' => 'pvu', 'Phvul.L007043' => 'pvu', 'Potri.001G242300' => 'ptr', 'Potri.002G185300' => 'ptr', 'Potri.006G086900' => 'ptr', 'Potri.008G151700' => 'ptr', 'Potri.009G033500' => 'ptr', 'Potri.010G089300' => 'ptr', 'Potri.014G110800' => 'ptr', 'Pp3c27_8130' => 'ppa', 'Pp3c6_27410' => 'ppa', 'PRCOL_00001659' => 'pco', 'PRCOL_00001927' => 'pco', 'PRCOL_00003649' => 'pco', 'Prupe.1G011600' => 'ppe', 'Prupe.3G000800' => 'ppe', 'Prupe.3G001100' => 'ppe', 'Prupe.6G072700' => 'ppe', 'Prupe.6G072800' => 'ppe', 'Prupe.6G257300' => 'ppe', 'Prupe.8G033000' => 'ppe', 'Psat0s2633g0080' => 'psa', 'Psat0s3396g0080' => 'psa', 'Psat0s3396g0200' => 'psa', 'Psat3g139080' => 'psa', 'Psat5g285080' => 'psa', 'Psat6g157760' => 'psa', 'Psat6g208440' => 'psa', 'Psat7g215320' => 'psa', 'Psat7g215400' => 'psa', 'Psat7g235600' => 'psa', 'Psat7g235760' => 'psa', 'PSO063G4603' => 'pso', 'PSO210G0182' => 'pso', 'PSO210G0196' => 'pso', 'PSO339G0394' => 'pso', 'PSO339G4127' => 'pso', 'PSO513G0064' => 'pso', 'PSO761G0079' => 'pso', 'QL01p031003' => 'qlo', 'QL01p031078' => 'qlo', 'QL06p003004' => 'qlo', 'QL07p048731' => 'qlo', 'QL09p037427' => 'qlo', 'RcHm_v2.0_Chr3g0466361' => 'rch', 'RcHm_v2.0_Chr3g0485571' => 'rch', 'RcHm_v2.0_Chr4g0416551' => 'rch', 'RcHm_v2.0_Chr5g0065831' => 'rch', 'Rhsim01G0230500' => 'rsi', 'Rhsim05G0194000' => 'rsi', 'Rhsim08G0250400' => 'rsi', 'Sabra02G0131000' => 'sbr', 'Sabra06G0066300' => 'sbr', 'Sabra08G0115500' => 'sbr', 'Sabra09G0023900' => 'sbr', 'Sabra10G0054000' => 'sbr', 'Sabra14G0081500' => 'sbr', 'Sabra16G0147100' => 'sbr', 'SalBow2G2957' => 'sbo', 'SalBow4G3320' => 'sbo', 'SalBow8G1894' => 'sbo', 'Sc07g0007950' => 'sci', 'Sc12g0001360' => 'sci', 'Sc13g0004330' => 'sci', 'Sc20g0005010' => 'sci', 'Sed0000361' => 'sed', 'Sed0001706' => 'sed', 'Sed0002422' => 'sed', 'Sed0004029' => 'sed', 'Sed0004602' => 'sed', 'Sed0004943' => 'sed', 'Sed0008646' => 'sed', 'Sed0023313' => 'sed', 'Sed0024843' => 'sed', 'SEGI_00081' => 'sgi', 'SEGI_00947' => 'sgi', 'SEGI_04046' => 'sgi', 'SEGI_06880' => 'sgi', 'SEGI_09736' => 'sgi', 'SEGI_12741' => 'sgi', 'SEGI_14530' => 'sgi', 'SEGI_20705' => 'sgi', 'SEGI_26088' => 'sgi', 'SEGI_28323' => 'sgi', 'SEGI_33343' => 'sgi', 'SGA_v2.0_scaffold126G33775' => 'sas', 'SGA_v2.0_scaffold2G01337' => 'sas', 'SGA_v2.0_scaffold38G15006' => 'sas', 'SGA_v2.0_scaffold39G15264' => 'sas', 'SGA_v2.0_scaffold453G51880' => 'sas', 'SHI12696' => 'shi', 'SMO367G1096' => 'smo', 'Solyc01g068630.3' => 'sly', 'Solyc05g011880.3' => 'sly', 'Solyc06g076300.3' => 'sly', 'Solyc09g010940.4' => 'sly', 'Solyc09g075890.3' => 'sly', 'Sopen01g030560' => 'spe', 'Sopen05g006630' => 'spe', 'Sopen06g032720' => 'spe', 'Sopen09g005660' => 'spe', 'Sopen09g030690' => 'spe', 'Sp4g14540' => 'spa', 'Sp4g20030' => 'spa', 'Sp5g01320' => 'spa', 'Sp6g21170' => 'spa', 'Sp6g21180' => 'spa', 'Sp6g21190' => 'spa', 'Sp6g40220' => 'spa', 'TAR362G0122' => 'tar', 'TAR362G1338' => 'tar', 'TAR369G0590' => 'tar', 'TAR371G0824' => 'tar', 'TAR622G1429' => 'tar', 'TAR623G0734' => 'tar', 'TAR625G0441' => 'tar', 'TAR629G0976' => 'tar', 'TAR633G1195' => 'tar', 'TAR636G2660' => 'tar', 'THA.LOC104799440' => 'tha', 'THA.LOC104800966' => 'tha', 'THA.LOC104806559' => 'tha', 'THA.LOC104810765' => 'tha', 'THA.LOC104816266' => 'tha', 'THA.LOC104817419' => 'tha', 'THA.LOC104827021' => 'tha', 'Thecc.01G327400' => 'tca', 'Thecc.04G229200' => 'tca', 'Thecc.05G037400' => 'tca', 'Thecc.09G318600' => 'tca', 'Thecc.09G318700' => 'tca', 'Thhalv10006238m.g' => 'esa', 'Thhalv10014321m.g' => 'esa', 'Thhalv10014335m.g' => 'esa', 'Thhalv10015826m.g' => 'esa', 'Thhalv10017107m.g' => 'esa', 'Thhalv10017180m.g' => 'esa', 'Thhalv10029339m.g' => 'esa', 'TPR.G1699' => 'tpr', 'TPR.G23609' => 'tpr', 'TPR.G3081' => 'tpr', 'TPR.G40397' => 'tpr', 'TPR.G5522' => 'tpr', 'TPR.G5618' => 'tpr', 'TPR.G5626' => 'tpr', 'TWI09G1632' => 'twi', 'TWI23G1230' => 'twi', 'TWI53G1064' => 'twi', 'TWI59G0751' => 'twi', 'TWI74G0947' => 'twi', 'TWI77G0337' => 'twi', 'TWI79G1254' => 'twi', 'unitig_0.g2341' => 'ugi', 'unitig_26.g10006' => 'ugi', 'unitig_26.g10008' => 'ugi', 'unitig_26.g9192' => 'ugi', 'vmacro14547' => 'vma', 'vmacro15333' => 'vma', 'vmacro18743' => 'vma', 'vmacro20166' => 'vma', 'VMungo0331G0523' => 'vmu', 'VMungo0331G1202' => 'vmu', 'VMungo0720G1228' => 'vmu', 'VMungo0720G1514' => 'vmu', 'VMungo1080G0169' => 'vmu', 'VMungo1127G1475' => 'vmu', 'VMungo1383G1208' => 'vmu', 'VMungo1383G1698' => 'vmu', 'Zm00001eb012270' => 'zma', 'Zm00001eb054100' => 'zma', 'Zm00001eb063350' => 'zma', 'Zm00001eb328560' => 'zma', 'Zm00001eb342820' => 'zma', 'Zm00001eb362210' => 'zma', 'Zm00001eb397730' => 'zma', 'Zm00001eb399750' => 'zma' ) $gf_id = 'HOM05D000959' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000959' ) $data_identifier = 'HOM05D000959' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 5, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 5, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 10, 'mbi' => (int) 3, 'mco' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 2, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 3, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 11, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399750' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000959', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '622', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p07100' => 'bna', 'A03p11720' => 'bna', 'A05p08300' => 'bna', 'A05p13380' => 'bna', 'A09p54130' => 'bna', 'A10p16690' => 'bna', 'A10p16700' => 'bna', 'A10p33390' => 'bna', 'Aa31LG10G16020' => 'aar', 'Aa31LG1G11810' => 'aar', 'Aa31LG1G11830' => 'aar', 'Aa31LG1G22510' => 'aar', 'Aa31LG5G4890' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5793' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2310' => 'aag', 'Actinidia08499' => 'ach', 'Actinidia11262' => 'ach', 'Actinidia23926' => 'ach', 'Actinidia34420' => 'ach', 'Actinidia36970' => 'ach', 'Ah.02g111220' => 'amhyb', 'Ah.15g097750' => 'amhyb', 'AL4G27500' => 'aly', 'AL6G11470' => 'aly', 'AL8G35950' => 'aly', 'AL8G35960' => 'aly', 'AL8G35970' => 'aly', 'Aqoxy1G00912' => 'aox', 'Aqoxy2G02253' => 'aox', 'Aqoxy2G02411' => 'aox', 'Aqoxy5G00485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BZ66YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K8ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM4FUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6BF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HFV7XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25JBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0YNNV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MAKK6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P70IT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP2Z6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V61LZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YWP64R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3S9AI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7PGHH' => 'arhy', 'AT2G32150' => 'ath', 'AT3G62040' => 'ath', 'AT5G02230' => 'ath', 'AT5G59480' => 'ath', 'AT5G59490' => 'ath', 'ATR0332G060' => 'atr', 'ATR0559G190' => 'atr', 'ATR0693G294' => 'atr', 'Atru.chr3.3975' => 'acertr', 'Atru.chr3.3976' => 'acertr', 'Atru.chr3.3977' => 'acertr', 'Atru.chr4.2498' => 'acertr', 'Atru.chr5.838' => 'acertr', 'Atru.chr8.1990' => 'acertr', 'Atru.chr8.1991' => 'acertr', 'Atru.chr8.1992' => 'acertr', 'AUR62001759' => 'cqu', 'AUR62009545' => 'cqu', 'AUR62010474' => 'cqu', 'AUR62025820' => 'cqu', 'AUR62030422' => 'cqu', 'AUR62033605' => 'cqu', 'AUR62038615' => 'cqu', 'AUR62041347' => 'cqu', 'BcaB01g04574' => 'bca', 'BcaB02g09263' => 'bca', 'BcaB02g10453' => 'bca', 'BcaB05g22513' => 'bca', 'BcaB08g36253' => 'bca', 'BcaB08g36254' => 'bca', 'BcaC01g06519' => 'bca', 'BcaC02g11889' => 'bca', 'BcaC03g14010' => 'bca', 'BcaC03g18439' => 'bca', 'BcaC04g19765' => 'bca', 'BcaC09g48432' => 'bca', 'BcaNung07302' => 'bca', 'BolC2t06040H' => 'bol', 'BolC2t07346H' => 'bol', 'BolC3t13817H' => 'bol', 'BolC4t22625H' => 'bol', 'BolC4t23297H' => 'bol', 'BolC8t51278H' => 'bol', 'BolC9t58050H' => 'bol', 'BolC9t58051H' => 'bol', 'BolC9t60163H' => 'bol', 'BraA02t04712Z' => 'bra', 'BraA02t05791Z' => 'bra', 'BraA03t10483Z' => 'bra', 'BraA05t19795Z' => 'bra', 'BraA05t20276Z' => 'bra', 'BraA09t40827Z' => 'bra', 'BraA10t43750Z' => 'bra', 'BraA10t43751Z' => 'bra', 'BraA10t45370Z' => 'bra', 'C02p00400' => 'bna', 'C02p12460' => 'bna', 'C03p13680' => 'bna', 'C04p10270' => 'bna', 'C04p17500' => 'bna', 'C08p37010' => 'bna', 'C09p51880' => 'bna', 'C09p51890' => 'bna', 'C09p74300' => 'bna', 'CAN.G179.26' => 'can', 'CAN.G3384.1' => 'can', 'CAN.G394.68' => 'can', 'CAN.G907.13' => 'can', 'CANSAT11G0012' => 'cansat', 'CANSAT25G1586' => 'cansat', 'CANSAT35G0735' => 'cansat', 'CANSAT54G0556' => 'cansat', 'CANSAT64G0356' => 'cansat', 'CANSAT78G2042' => 'cansat', 'CARHR125920' => 'chi', 'CARHR131910' => 'chi', 'CARHR172390' => 'chi', 'CARHR211140' => 'chi', 'CARHR285850' => 'chi', 'CARHR285860' => 'chi', 'Carub.0004s1347' => 'cru', 'Carub.0004s1960' => 'cru', 'Carub.0005s2880' => 'cru', 'Carub.0006s0107' => 'cru', 'Carub.0008s2015' => 'cru', 'Carub.0008s2016' => 'cru', 'Carub.0008s2017' => 'cru', 'Ca_01315_v3' => 'car', 'Ca_05063_v3' => 'car', 'Ca_10231_v3' => 'car', 'Ca_10913_v3' => 'car', 'Ca_19156_v3' => 'car', 'Ca_23644_v3' => 'car', 'Ca_26735_v3' => 'car', 'Cc01_g13130' => 'ccan', 'Cc02_g21690' => 'ccan', 'Cc03_g03600' => 'ccan', 'Cc06_g02510' => 'ccan', 'CDE02G1265' => 'cde', 'CDE05G0415' => 'cde', 'CDE08G1082' => 'cde', 'Cfa005780' => 'cfa', 'Cfa011522' => 'cfa', 'Cfa011523' => 'cfa', 'Cfa015627' => 'cfa', 'Cfa017359' => 'cfa', 'Ciclev10005687m.g' => 'ccl', 'Ciclev10012173m.g' => 'ccl', 'Ciclev10021621m.g' => 'ccl', 'Ciclev10028968m.g' => 'ccl', 'Ciclev10029907m.g' => 'ccl', 'CiPaw.01G164800' => 'cil', 'CiPaw.07G083700' => 'cil', 'CiPaw.07G127000' => 'cil', 'CiPaw.07G136900' => 'cil', 'CiPaw.08G081700' => 'cil', 'CiPaw.09G194600' => 'cil', 'CiPaw.10G146500' => 'cil', 'CiPaw.13G091500' => 'cil', 'CiPaw.13G091600' => 'cil', 'ClCG00G003390' => 'cla', 'ClCG01G007220' => 'cla', 'ClCG03G001370' => 'cla', 'ClCG04G008100' => 'cla', 'ClCG06G006110' => 'cla', 'ClCG06G006130' => 'cla', 'ClCG10G021210' => 'cla', 'COL.COLO4_07648' => 'col', 'COL.COLO4_07650' => 'col', 'COL.COLO4_07651' => 'col', 'COL.COLO4_14780' => 'col', 'COL.COLO4_18546' => 'col', 'COL.COLO4_18547' => 'col', 'COL.COLO4_23103' => 'col', 'COL.COLO4_30419' => 'col', 'COL.COLO4_34232' => 'col', 'Cpa.g.sc169.20' => 'cpa', 'Cpa.g.sc57.45' => 'cpa', 'Cpa.g.sc58.124' => 'cpa', 'Cpa.g.sc58.125' => 'cpa', 'Cpa.g.sc81.118' => 'cpa', 'Cpa.g.sc81.119' => 'cpa', 'Cre12.g524700' => 'cre', 'CsaV3_1G034430' => 'csa', 'CsaV3_1G034440' => 'csa', 'CsaV3_1G034450' => 'csa', 'CsaV3_3G034830' => 'csa', 'CsaV3_4G025090' => 'csa', 'CsaV3_5G018660' => 'csa', 'CsaV3_6G038160' => 'csa', 'CSS0003447' => 'camsi', 'CSS0017840' => 'camsi', 'CSS0019260' => 'camsi', 'CSS0040375' => 'camsi', 'CSS0042533' => 'camsi', 'DCAR_005960' => 'dca', 'DCAR_012104' => 'dca', 'DCAR_012105' => 'dca', 'DCAR_012293' => 'dca', 'DCAR_015632' => 'dca', 'DCAR_024602' => 'dca', 'DCAR_028752' => 'dca', 'Dinv06261' => 'din', 'Dinv13982' => 'din', 'Dinv17029' => 'din', 'Dinv18463' => 'din', 'Dinv33181' => 'din', 'Dinv35585' => 'din', 'Dinv37161' => 'din', 'Dinv42977' => 'din', 'Dinv43122' => 'din', 'Dinv44517' => 'din', 'Duzib093G0256' => 'dzi', 'Duzib106G1254' => 'dzi', 'Duzib128G1789' => 'dzi', 'Duzib133G0633' => 'dzi', 'Duzib138G0510' => 'dzi', 'Duzib150G1084' => 'dzi', 'Duzib168G0488' => 'dzi', 'Duzib168G1523' => 'dzi', 'Duzib170G0133' => 'dzi', 'ECA234G1433' => 'eca', 'ECA236G1432' => 'eca', 'ECA236G2256' => 'eca', 'ECA236G2365' => 'eca', 'ECA236G4830' => 'eca', 'ECA248G1505' => 'eca', 'EL10Ac3g06431' => 'bvu', 'EL10Ac5g12577' => 'bvu', 'EL10Ac6g13533' => 'bvu', 'EL10Ac7g16045' => 'bvu', 'Eucgr.A01281' => 'egr', 'Eucgr.B02326' => 'egr', 'Eucgr.H03532' => 'egr', 'Eucgr.K00553' => 'egr', 'Eucgr.K03116' => 'egr', 'FAN02G3963' => 'fan', 'FAN05G0438' => 'fan', 'FAN09G2434' => 'fan', 'FAN12G3984' => 'fan', 'FAN14G0798' => 'fan', 'FAN17G0652' => 'fan', 'FAN19G1988' => 'fan', 'FAN22G0632' => 'fan', 'FAN23G0387' => 'fan', 'FAN26G1323' => 'fan', 'FAN28G0666' => 'fan', 'FvH4_1g26080' => 'fve', 'FvH4_3g36780' => 'fve', 'FvH4_4g15270' => 'fve', 'FvH4_6g13490' => 'fve', 'Glyma.01G098700' => 'gma', 'Glyma.03G065900' => 'gma', 'Glyma.03G073754' => 'gma', 'Glyma.03G073758' => 'gma', 'Glyma.03G083200' => 'gma', 'Glyma.03G225500' => 'gma', 'Glyma.05G037766' => 'gma', 'Glyma.07G133500' => 'gma', 'Glyma.10G139400' => 'gma', 'Glyma.10G248900' => 'gma', 'Glyma.11G137800' => 'gma', 'Glyma.12G061300' => 'gma', 'Glyma.13G337900' => 'gma', 'Glyma.15G036600' => 'gma', 'Glyma.18G182800' => 'gma', 'Glyma.19G222500' => 'gma', 'Glyma.20G144800' => 'gma', 'Gohir.A01G222000' => 'ghi', 'Gohir.A03G044000' => 'ghi', 'Gohir.A03G044100' => 'ghi', 'Gohir.A04G083100' => 'ghi', 'Gohir.A07G127200' => 'ghi', 'Gohir.A07G132400' => 'ghi', 'Gohir.A08G000700' => 'ghi', 'Gohir.A11G327300' => 'ghi', 'Gohir.D01G211500' => 'ghi', 'Gohir.D03G123400' => 'ghi', 'Gohir.D03G123500' => 'ghi', 'Gohir.D04G121800' => 'ghi', 'Gohir.D07G131500' => 'ghi', 'Gohir.D07G136600' => 'ghi', 'Gohir.D08G011600' => 'ghi', 'Gohir.D11G346200' => 'ghi', 'Gorai.001G142800' => 'gra', 'Gorai.001G148700' => 'gra', 'Gorai.002G257300' => 'gra', 'Gorai.003G130000' => 'gra', 'Gorai.003G130100' => 'gra', 'Gorai.004G005300' => 'gra', 'Gorai.007G376500' => 'gra', 'Gorai.012G104700' => 'gra', 'GSVIVG01017946001' => 'vvi', 'GSVIVG01024928001' => 'vvi', 'GSVIVG01028227001' => 'vvi', 'GSVIVG01034151001' => 'vvi', 'HanXRQChr05g0135031' => 'han', 'HanXRQChr05g0135041' => 'han', 'HanXRQChr05g0140021' => 'han', 'HanXRQChr06g0178981' => 'han', 'HanXRQChr07g0188251' => 'han', 'HanXRQChr08g0235311' => 'han', 'HanXRQChr09g0271011' => 'han', 'HanXRQChr10g0293321' => 'han', 'HanXRQChr13g0388171' => 'han', 'Haze_00916' => 'cav', 'Haze_05063' => 'cav', 'Haze_20814' => 'cav', 'Haze_24128' => 'cav', 'Hma1.2p1_0745F.1_g212010' => 'hma', 'Hma1.2p1_0757F.1_g213260' => 'hma', 'Hma1.2p1_0936F.1_g238840' => 'hma', 'Hma1.2p1_1735F.1_g299890' => 'hma', 'Hma1.2p1_1861F.1_g305685' => 'hma', 'HPP92_003397' => 'vpl', 'HPP92_012597' => 'vpl', 'HPP92_015520' => 'vpl', 'HPP92_015539' => 'vpl', 'HPP92_020373' => 'vpl', 'Hund04938' => 'sun', 'Hund10677' => 'sun', 'Hund11033' => 'sun', 'Hund12155' => 'sun', 'Lalb_Chr01g0022551' => 'lal', 'Lalb_Chr03g0042341' => 'lal', 'Lalb_Chr07g0192931' => 'lal', 'Lalb_Chr12g0209551' => 'lal', 'Lalb_Chr19g0125251' => 'lal', 'Lalb_Chr19g0137891' => 'lal', 'Lalb_Chr21g0304641' => 'lal', 'Lalb_Chr21g0309881' => 'lal', 'Lj1A5T12' => 'lonja', 'Lj1C148G10' => 'lonja', 'Lj2A93T83' => 'lonja', 'Lj3A738G68' => 'lonja', 'Lj3C966T1' => 'lonja', 'Lj3g0018958' => 'lja', 'Lj3g0021831' => 'lja', 'Lj3g0025443' => 'lja', 'Lj4g0026809' => 'lja', 'Lj5g0012558' => 'lja', 'Lj5g0021586' => 'lja', 'Lsat_1_v5_gn_5_156840' => 'lsa', 'Lsat_1_v5_gn_8_73460' => 'lsa', 'Lsat_1_v5_gn_8_73481' => 'lsa', 'Lsat_1_v5_gn_9_31601' => 'lsa', 'Lsat_1_v5_gn_9_77320' => 'lsa', 'Manes.01G171300' => 'mes', 'Manes.01G171400' => 'mes', 'Manes.01G236100' => 'mes', 'Manes.02G130500' => 'mes', 'Manes.02G130600' => 'mes', 'Manes.03G180200' => 'mes', 'Manes.05G007000' => 'mes', 'Manes.08G084400' => 'mes', 'Manes.09G092600' => 'mes', 'Manes.15G027900' => 'mes', 'MBI04_g40948_MAGBIO' => 'mbi', 'MBI14_g12123_MAGBIO' => 'mbi', 'MBI18_g28915_MAGBIO' => 'mbi', 'MCO09G053' => 'mco', 'MCO11G782' => 'mco', 'MCO15G215' => 'mco', 'MD03G1088500' => 'mdo', 'MD03G1088600' => 'mdo', 'MD04G1130800' => 'mdo', 'MD09G1291700' => 'mdo', 'MD11G1097500' => 'mdo', 'MD11G1097600' => 'mdo', 'MD12G1143900' => 'mdo', 'MD13G1191400' => 'mdo', 'MD16G1191500' => 'mdo', 'Medtr1g085570' => 'mtr', 'Medtr1g104610' => 'mtr', 'Medtr2g097520' => 'mtr', 'Medtr4g021800' => 'mtr', 'Medtr4g021825' => 'mtr', 'Medtr4g064270' => 'mtr', 'Medtr4g064380' => 'mtr', 'Medtr7g062150' => 'mtr', 'MELO3C003138.2' => 'cme', 'MELO3C005187.2' => 'cme', 'MELO3C009252.2' => 'cme', 'MELO3C014481.2' => 'cme', 'MELO3C020616.2' => 'cme', 'MELO3C020617.2' => 'cme', 'MELO3C020618.2' => 'cme', 'Migut.G00328' => 'egut', 'Migut.J00320' => 'egut', 'Migut.L01000' => 'egut', 'Migut.L01953' => 'egut', 'MSTRG.10253' => 'ama', 'MSTRG.19077' => 'ama', 'MSTRG.26780' => 'ama', 'MSTRG.4023' => 'ama', 'MSTRG.5655' => 'ama', 'MSTRG.9992' => 'ama', 'Nitab4.5_0000043g0310' => 'nta', 'Nitab4.5_0000463g0080' => 'nta', 'Nitab4.5_0000705g0170' => 'nta', 'Nitab4.5_0001326g0060' => 'nta', 'Nitab4.5_0001628g0030' => 'nta', 'Nitab4.5_0002103g0110' => 'nta', 'Nitab4.5_0002946g0030' => 'nta', 'Nitab4.5_0004639g0030' => 'nta', 'Nn2g11149' => 'nnu', 'Nn2g13389' => 'nnu', 'Nn4g25326' => 'nnu', 'Nn4g26290' => 'nnu', 'Nn5g29865' => 'nnu', 'Oeu004163.1' => 'oeu', 'Oeu006901.1' => 'oeu', 'Oeu010096.1' => 'oeu', 'Oeu024340.1' => 'oeu', 'Oeu048369.1' => 'oeu', 'Os01g0973000' => 'osa', 'Os03g0273800' => 'osa', 'Os03g0701200' => 'osa', 'Os03g0834050' => 'osa', 'Os07g0634400' => 'osa', 'Peaxi162Scf00092g01414' => 'pax', 'Peaxi162Scf00165g00818' => 'pax', 'Peaxi162Scf00309g00516' => 'pax', 'Peaxi162Scf00774g00218' => 'pax', 'PGR004G1824' => 'pgr', 'PGR004G2606' => 'pgr', 'PGR031G2716' => 'pgr', 'PGR102G2460' => 'pgr', 'PGR142G2599' => 'pgr', 'PGSC0003DMG400000843' => 'stu', 'PGSC0003DMG400008829' => 'stu', 'PGSC0003DMG400030418' => 'stu', 'PGSC0003DMG400031834' => 'stu', 'PGSC0003DMG401028300' => 'stu', 'PGSC0003DMG402028300' => 'stu', 'Phvul.001G219300' => 'pvu', 'Phvul.007G056000' => 'pvu', 'Phvul.007G208000' => 'pvu', 'Phvul.008G119500' => 'pvu', 'Phvul.010G011200' => 'pvu', 'Phvul.010G014800' => 'pvu', 'Phvul.011G062900' => 'pvu', 'Phvul.L007043' => 'pvu', 'Potri.001G242300' => 'ptr', 'Potri.002G185300' => 'ptr', 'Potri.006G086900' => 'ptr', 'Potri.008G151700' => 'ptr', 'Potri.009G033500' => 'ptr', 'Potri.010G089300' => 'ptr', 'Potri.014G110800' => 'ptr', 'Pp3c27_8130' => 'ppa', 'Pp3c6_27410' => 'ppa', 'PRCOL_00001659' => 'pco', 'PRCOL_00001927' => 'pco', 'PRCOL_00003649' => 'pco', 'Prupe.1G011600' => 'ppe', 'Prupe.3G000800' => 'ppe', 'Prupe.3G001100' => 'ppe', 'Prupe.6G072700' => 'ppe', 'Prupe.6G072800' => 'ppe', 'Prupe.6G257300' => 'ppe', 'Prupe.8G033000' => 'ppe', 'Psat0s2633g0080' => 'psa', 'Psat0s3396g0080' => 'psa', 'Psat0s3396g0200' => 'psa', 'Psat3g139080' => 'psa', 'Psat5g285080' => 'psa', 'Psat6g157760' => 'psa', 'Psat6g208440' => 'psa', 'Psat7g215320' => 'psa', 'Psat7g215400' => 'psa', 'Psat7g235600' => 'psa', 'Psat7g235760' => 'psa', 'PSO063G4603' => 'pso', 'PSO210G0182' => 'pso', 'PSO210G0196' => 'pso', 'PSO339G0394' => 'pso', 'PSO339G4127' => 'pso', 'PSO513G0064' => 'pso', 'PSO761G0079' => 'pso', 'QL01p031003' => 'qlo', 'QL01p031078' => 'qlo', 'QL06p003004' => 'qlo', 'QL07p048731' => 'qlo', 'QL09p037427' => 'qlo', 'RcHm_v2.0_Chr3g0466361' => 'rch', 'RcHm_v2.0_Chr3g0485571' => 'rch', 'RcHm_v2.0_Chr4g0416551' => 'rch', 'RcHm_v2.0_Chr5g0065831' => 'rch', 'Rhsim01G0230500' => 'rsi', 'Rhsim05G0194000' => 'rsi', 'Rhsim08G0250400' => 'rsi', 'Sabra02G0131000' => 'sbr', 'Sabra06G0066300' => 'sbr', 'Sabra08G0115500' => 'sbr', 'Sabra09G0023900' => 'sbr', 'Sabra10G0054000' => 'sbr', 'Sabra14G0081500' => 'sbr', 'Sabra16G0147100' => 'sbr', 'SalBow2G2957' => 'sbo', 'SalBow4G3320' => 'sbo', 'SalBow8G1894' => 'sbo', 'Sc07g0007950' => 'sci', 'Sc12g0001360' => 'sci', 'Sc13g0004330' => 'sci', 'Sc20g0005010' => 'sci', 'Sed0000361' => 'sed', 'Sed0001706' => 'sed', 'Sed0002422' => 'sed', 'Sed0004029' => 'sed', 'Sed0004602' => 'sed', 'Sed0004943' => 'sed', 'Sed0008646' => 'sed', 'Sed0023313' => 'sed', 'Sed0024843' => 'sed', 'SEGI_00081' => 'sgi', 'SEGI_00947' => 'sgi', 'SEGI_04046' => 'sgi', 'SEGI_06880' => 'sgi', 'SEGI_09736' => 'sgi', 'SEGI_12741' => 'sgi', 'SEGI_14530' => 'sgi', 'SEGI_20705' => 'sgi', 'SEGI_26088' => 'sgi', 'SEGI_28323' => 'sgi', 'SEGI_33343' => 'sgi', 'SGA_v2.0_scaffold126G33775' => 'sas', 'SGA_v2.0_scaffold2G01337' => 'sas', 'SGA_v2.0_scaffold38G15006' => 'sas', 'SGA_v2.0_scaffold39G15264' => 'sas', 'SGA_v2.0_scaffold453G51880' => 'sas', 'SHI12696' => 'shi', 'SMO367G1096' => 'smo', 'Solyc01g068630.3' => 'sly', 'Solyc05g011880.3' => 'sly', 'Solyc06g076300.3' => 'sly', 'Solyc09g010940.4' => 'sly', 'Solyc09g075890.3' => 'sly', 'Sopen01g030560' => 'spe', 'Sopen05g006630' => 'spe', 'Sopen06g032720' => 'spe', 'Sopen09g005660' => 'spe', 'Sopen09g030690' => 'spe', 'Sp4g14540' => 'spa', 'Sp4g20030' => 'spa', 'Sp5g01320' => 'spa', 'Sp6g21170' => 'spa', 'Sp6g21180' => 'spa', 'Sp6g21190' => 'spa', 'Sp6g40220' => 'spa', 'TAR362G0122' => 'tar', 'TAR362G1338' => 'tar', 'TAR369G0590' => 'tar', 'TAR371G0824' => 'tar', 'TAR622G1429' => 'tar', 'TAR623G0734' => 'tar', 'TAR625G0441' => 'tar', 'TAR629G0976' => 'tar', 'TAR633G1195' => 'tar', 'TAR636G2660' => 'tar', 'THA.LOC104799440' => 'tha', 'THA.LOC104800966' => 'tha', 'THA.LOC104806559' => 'tha', 'THA.LOC104810765' => 'tha', 'THA.LOC104816266' => 'tha', 'THA.LOC104817419' => 'tha', 'THA.LOC104827021' => 'tha', 'Thecc.01G327400' => 'tca', 'Thecc.04G229200' => 'tca', 'Thecc.05G037400' => 'tca', 'Thecc.09G318600' => 'tca', 'Thecc.09G318700' => 'tca', 'Thhalv10006238m.g' => 'esa', 'Thhalv10014321m.g' => 'esa', 'Thhalv10014335m.g' => 'esa', 'Thhalv10015826m.g' => 'esa', 'Thhalv10017107m.g' => 'esa', 'Thhalv10017180m.g' => 'esa', 'Thhalv10029339m.g' => 'esa', 'TPR.G1699' => 'tpr', 'TPR.G23609' => 'tpr', 'TPR.G3081' => 'tpr', 'TPR.G40397' => 'tpr', 'TPR.G5522' => 'tpr', 'TPR.G5618' => 'tpr', 'TPR.G5626' => 'tpr', 'TWI09G1632' => 'twi', 'TWI23G1230' => 'twi', 'TWI53G1064' => 'twi', 'TWI59G0751' => 'twi', 'TWI74G0947' => 'twi', 'TWI77G0337' => 'twi', 'TWI79G1254' => 'twi', 'unitig_0.g2341' => 'ugi', 'unitig_26.g10006' => 'ugi', 'unitig_26.g10008' => 'ugi', 'unitig_26.g9192' => 'ugi', 'vmacro14547' => 'vma', 'vmacro15333' => 'vma', 'vmacro18743' => 'vma', 'vmacro20166' => 'vma', 'VMungo0331G0523' => 'vmu', 'VMungo0331G1202' => 'vmu', 'VMungo0720G1228' => 'vmu', 'VMungo0720G1514' => 'vmu', 'VMungo1080G0169' => 'vmu', 'VMungo1127G1475' => 'vmu', 'VMungo1383G1208' => 'vmu', 'VMungo1383G1698' => 'vmu', 'Zm00001eb012270' => 'zma', 'Zm00001eb054100' => 'zma', 'Zm00001eb063350' => 'zma', 'Zm00001eb328560' => 'zma', 'Zm00001eb342820' => 'zma', 'Zm00001eb362210' => 'zma', 'Zm00001eb397730' => 'zma', 'Zm00001eb399750' => 'zma' ), 'gf_id' => 'HOM05D000959', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000959' ), 'data_identifier' => 'HOM05D000959', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000959', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '622', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p07100' => 'bna', 'A03p11720' => 'bna', 'A05p08300' => 'bna', 'A05p13380' => 'bna', 'A09p54130' => 'bna', 'A10p16690' => 'bna', 'A10p16700' => 'bna', 'A10p33390' => 'bna', 'Aa31LG10G16020' => 'aar', 'Aa31LG1G11810' => 'aar', 'Aa31LG1G11830' => 'aar', 'Aa31LG1G22510' => 'aar', 'Aa31LG5G4890' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5793' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2310' => 'aag', 'Actinidia08499' => 'ach', 'Actinidia11262' => 'ach', 'Actinidia23926' => 'ach', 'Actinidia34420' => 'ach', 'Actinidia36970' => 'ach', 'Ah.02g111220' => 'amhyb', 'Ah.15g097750' => 'amhyb', 'AL4G27500' => 'aly', 'AL6G11470' => 'aly', 'AL8G35950' => 'aly', 'AL8G35960' => 'aly', 'AL8G35970' => 'aly', 'Aqoxy1G00912' => 'aox', 'Aqoxy2G02253' => 'aox', 'Aqoxy2G02411' => 'aox', 'Aqoxy5G00485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BZ66YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K8ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM4FUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6BF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HFV7XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25JBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0YNNV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MAKK6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P70IT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP2Z6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V61LZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YWP64R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3S9AI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7PGHH' => 'arhy', 'AT2G32150' => 'ath', 'AT3G62040' => 'ath', 'AT5G02230' => 'ath', 'AT5G59480' => 'ath', 'AT5G59490' => 'ath', 'ATR0332G060' => 'atr', 'ATR0559G190' => 'atr', 'ATR0693G294' => 'atr', 'Atru.chr3.3975' => 'acertr', 'Atru.chr3.3976' => 'acertr', 'Atru.chr3.3977' => 'acertr', 'Atru.chr4.2498' => 'acertr', 'Atru.chr5.838' => 'acertr', 'Atru.chr8.1990' => 'acertr', 'Atru.chr8.1991' => 'acertr', 'Atru.chr8.1992' => 'acertr', 'AUR62001759' => 'cqu', 'AUR62009545' => 'cqu', 'AUR62010474' => 'cqu', 'AUR62025820' => 'cqu', 'AUR62030422' => 'cqu', 'AUR62033605' => 'cqu', 'AUR62038615' => 'cqu', 'AUR62041347' => 'cqu', 'BcaB01g04574' => 'bca', 'BcaB02g09263' => 'bca', 'BcaB02g10453' => 'bca', 'BcaB05g22513' => 'bca', 'BcaB08g36253' => 'bca', 'BcaB08g36254' => 'bca', 'BcaC01g06519' => 'bca', 'BcaC02g11889' => 'bca', 'BcaC03g14010' => 'bca', 'BcaC03g18439' => 'bca', 'BcaC04g19765' => 'bca', 'BcaC09g48432' => 'bca', 'BcaNung07302' => 'bca', 'BolC2t06040H' => 'bol', 'BolC2t07346H' => 'bol', 'BolC3t13817H' => 'bol', 'BolC4t22625H' => 'bol', 'BolC4t23297H' => 'bol', 'BolC8t51278H' => 'bol', 'BolC9t58050H' => 'bol', 'BolC9t58051H' => 'bol', 'BolC9t60163H' => 'bol', 'BraA02t04712Z' => 'bra', 'BraA02t05791Z' => 'bra', 'BraA03t10483Z' => 'bra', 'BraA05t19795Z' => 'bra', 'BraA05t20276Z' => 'bra', 'BraA09t40827Z' => 'bra', 'BraA10t43750Z' => 'bra', 'BraA10t43751Z' => 'bra', 'BraA10t45370Z' => 'bra', 'C02p00400' => 'bna', 'C02p12460' => 'bna', 'C03p13680' => 'bna', 'C04p10270' => 'bna', 'C04p17500' => 'bna', 'C08p37010' => 'bna', 'C09p51880' => 'bna', 'C09p51890' => 'bna', 'C09p74300' => 'bna', 'CAN.G179.26' => 'can', 'CAN.G3384.1' => 'can', 'CAN.G394.68' => 'can', 'CAN.G907.13' => 'can', 'CANSAT11G0012' => 'cansat', 'CANSAT25G1586' => 'cansat', 'CANSAT35G0735' => 'cansat', 'CANSAT54G0556' => 'cansat', 'CANSAT64G0356' => 'cansat', 'CANSAT78G2042' => 'cansat', 'CARHR125920' => 'chi', 'CARHR131910' => 'chi', 'CARHR172390' => 'chi', 'CARHR211140' => 'chi', 'CARHR285850' => 'chi', 'CARHR285860' => 'chi', 'Carub.0004s1347' => 'cru', 'Carub.0004s1960' => 'cru', 'Carub.0005s2880' => 'cru', 'Carub.0006s0107' => 'cru', 'Carub.0008s2015' => 'cru', 'Carub.0008s2016' => 'cru', 'Carub.0008s2017' => 'cru', 'Ca_01315_v3' => 'car', 'Ca_05063_v3' => 'car', 'Ca_10231_v3' => 'car', 'Ca_10913_v3' => 'car', 'Ca_19156_v3' => 'car', 'Ca_23644_v3' => 'car', 'Ca_26735_v3' => 'car', 'Cc01_g13130' => 'ccan', 'Cc02_g21690' => 'ccan', 'Cc03_g03600' => 'ccan', 'Cc06_g02510' => 'ccan', 'CDE02G1265' => 'cde', 'CDE05G0415' => 'cde', 'CDE08G1082' => 'cde', 'Cfa005780' => 'cfa', 'Cfa011522' => 'cfa', 'Cfa011523' => 'cfa', 'Cfa015627' => 'cfa', 'Cfa017359' => 'cfa', 'Ciclev10005687m.g' => 'ccl', 'Ciclev10012173m.g' => 'ccl', 'Ciclev10021621m.g' => 'ccl', 'Ciclev10028968m.g' => 'ccl', 'Ciclev10029907m.g' => 'ccl', 'CiPaw.01G164800' => 'cil', 'CiPaw.07G083700' => 'cil', 'CiPaw.07G127000' => 'cil', 'CiPaw.07G136900' => 'cil', 'CiPaw.08G081700' => 'cil', 'CiPaw.09G194600' => 'cil', 'CiPaw.10G146500' => 'cil', 'CiPaw.13G091500' => 'cil', 'CiPaw.13G091600' => 'cil', 'ClCG00G003390' => 'cla', 'ClCG01G007220' => 'cla', 'ClCG03G001370' => 'cla', 'ClCG04G008100' => 'cla', 'ClCG06G006110' => 'cla', 'ClCG06G006130' => 'cla', 'ClCG10G021210' => 'cla', 'COL.COLO4_07648' => 'col', 'COL.COLO4_07650' => 'col', 'COL.COLO4_07651' => 'col', 'COL.COLO4_14780' => 'col', 'COL.COLO4_18546' => 'col', 'COL.COLO4_18547' => 'col', 'COL.COLO4_23103' => 'col', 'COL.COLO4_30419' => 'col', 'COL.COLO4_34232' => 'col', 'Cpa.g.sc169.20' => 'cpa', 'Cpa.g.sc57.45' => 'cpa', 'Cpa.g.sc58.124' => 'cpa', 'Cpa.g.sc58.125' => 'cpa', 'Cpa.g.sc81.118' => 'cpa', 'Cpa.g.sc81.119' => 'cpa', 'Cre12.g524700' => 'cre', 'CsaV3_1G034430' => 'csa', 'CsaV3_1G034440' => 'csa', 'CsaV3_1G034450' => 'csa', 'CsaV3_3G034830' => 'csa', 'CsaV3_4G025090' => 'csa', 'CsaV3_5G018660' => 'csa', 'CsaV3_6G038160' => 'csa', 'CSS0003447' => 'camsi', 'CSS0017840' => 'camsi', 'CSS0019260' => 'camsi', 'CSS0040375' => 'camsi', 'CSS0042533' => 'camsi', 'DCAR_005960' => 'dca', 'DCAR_012104' => 'dca', 'DCAR_012105' => 'dca', 'DCAR_012293' => 'dca', 'DCAR_015632' => 'dca', 'DCAR_024602' => 'dca', 'DCAR_028752' => 'dca', 'Dinv06261' => 'din', 'Dinv13982' => 'din', 'Dinv17029' => 'din', 'Dinv18463' => 'din', 'Dinv33181' => 'din', 'Dinv35585' => 'din', 'Dinv37161' => 'din', 'Dinv42977' => 'din', 'Dinv43122' => 'din', 'Dinv44517' => 'din', 'Duzib093G0256' => 'dzi', 'Duzib106G1254' => 'dzi', 'Duzib128G1789' => 'dzi', 'Duzib133G0633' => 'dzi', 'Duzib138G0510' => 'dzi', 'Duzib150G1084' => 'dzi', 'Duzib168G0488' => 'dzi', 'Duzib168G1523' => 'dzi', 'Duzib170G0133' => 'dzi', 'ECA234G1433' => 'eca', 'ECA236G1432' => 'eca', 'ECA236G2256' => 'eca', 'ECA236G2365' => 'eca', 'ECA236G4830' => 'eca', 'ECA248G1505' => 'eca', 'EL10Ac3g06431' => 'bvu', 'EL10Ac5g12577' => 'bvu', 'EL10Ac6g13533' => 'bvu', 'EL10Ac7g16045' => 'bvu', 'Eucgr.A01281' => 'egr', 'Eucgr.B02326' => 'egr', 'Eucgr.H03532' => 'egr', 'Eucgr.K00553' => 'egr', 'Eucgr.K03116' => 'egr', 'FAN02G3963' => 'fan', 'FAN05G0438' => 'fan', 'FAN09G2434' => 'fan', 'FAN12G3984' => 'fan', 'FAN14G0798' => 'fan', 'FAN17G0652' => 'fan', 'FAN19G1988' => 'fan', 'FAN22G0632' => 'fan', 'FAN23G0387' => 'fan', 'FAN26G1323' => 'fan', 'FAN28G0666' => 'fan', 'FvH4_1g26080' => 'fve', 'FvH4_3g36780' => 'fve', 'FvH4_4g15270' => 'fve', 'FvH4_6g13490' => 'fve', 'Glyma.01G098700' => 'gma', 'Glyma.03G065900' => 'gma', 'Glyma.03G073754' => 'gma', 'Glyma.03G073758' => 'gma', 'Glyma.03G083200' => 'gma', 'Glyma.03G225500' => 'gma', 'Glyma.05G037766' => 'gma', 'Glyma.07G133500' => 'gma', 'Glyma.10G139400' => 'gma', 'Glyma.10G248900' => 'gma', 'Glyma.11G137800' => 'gma', 'Glyma.12G061300' => 'gma', 'Glyma.13G337900' => 'gma', 'Glyma.15G036600' => 'gma', 'Glyma.18G182800' => 'gma', 'Glyma.19G222500' => 'gma', 'Glyma.20G144800' => 'gma', 'Gohir.A01G222000' => 'ghi', 'Gohir.A03G044000' => 'ghi', 'Gohir.A03G044100' => 'ghi', 'Gohir.A04G083100' => 'ghi', 'Gohir.A07G127200' => 'ghi', 'Gohir.A07G132400' => 'ghi', 'Gohir.A08G000700' => 'ghi', 'Gohir.A11G327300' => 'ghi', 'Gohir.D01G211500' => 'ghi', 'Gohir.D03G123400' => 'ghi', 'Gohir.D03G123500' => 'ghi', 'Gohir.D04G121800' => 'ghi', 'Gohir.D07G131500' => 'ghi', 'Gohir.D07G136600' => 'ghi', 'Gohir.D08G011600' => 'ghi', 'Gohir.D11G346200' => 'ghi', 'Gorai.001G142800' => 'gra', 'Gorai.001G148700' => 'gra', 'Gorai.002G257300' => 'gra', 'Gorai.003G130000' => 'gra', 'Gorai.003G130100' => 'gra', 'Gorai.004G005300' => 'gra', 'Gorai.007G376500' => 'gra', 'Gorai.012G104700' => 'gra', 'GSVIVG01017946001' => 'vvi', 'GSVIVG01024928001' => 'vvi', 'GSVIVG01028227001' => 'vvi', 'GSVIVG01034151001' => 'vvi', 'HanXRQChr05g0135031' => 'han', 'HanXRQChr05g0135041' => 'han', 'HanXRQChr05g0140021' => 'han', 'HanXRQChr06g0178981' => 'han', 'HanXRQChr07g0188251' => 'han', 'HanXRQChr08g0235311' => 'han', 'HanXRQChr09g0271011' => 'han', 'HanXRQChr10g0293321' => 'han', 'HanXRQChr13g0388171' => 'han', 'Haze_00916' => 'cav', 'Haze_05063' => 'cav', 'Haze_20814' => 'cav', 'Haze_24128' => 'cav', 'Hma1.2p1_0745F.1_g212010' => 'hma', 'Hma1.2p1_0757F.1_g213260' => 'hma', 'Hma1.2p1_0936F.1_g238840' => 'hma', 'Hma1.2p1_1735F.1_g299890' => 'hma', 'Hma1.2p1_1861F.1_g305685' => 'hma', 'HPP92_003397' => 'vpl', 'HPP92_012597' => 'vpl', 'HPP92_015520' => 'vpl', 'HPP92_015539' => 'vpl', 'HPP92_020373' => 'vpl', 'Hund04938' => 'sun', 'Hund10677' => 'sun', 'Hund11033' => 'sun', 'Hund12155' => 'sun', 'Lalb_Chr01g0022551' => 'lal', 'Lalb_Chr03g0042341' => 'lal', 'Lalb_Chr07g0192931' => 'lal', 'Lalb_Chr12g0209551' => 'lal', 'Lalb_Chr19g0125251' => 'lal', 'Lalb_Chr19g0137891' => 'lal', 'Lalb_Chr21g0304641' => 'lal', 'Lalb_Chr21g0309881' => 'lal', 'Lj1A5T12' => 'lonja', 'Lj1C148G10' => 'lonja', 'Lj2A93T83' => 'lonja', 'Lj3A738G68' => 'lonja', 'Lj3C966T1' => 'lonja', 'Lj3g0018958' => 'lja', 'Lj3g0021831' => 'lja', 'Lj3g0025443' => 'lja', 'Lj4g0026809' => 'lja', 'Lj5g0012558' => 'lja', 'Lj5g0021586' => 'lja', 'Lsat_1_v5_gn_5_156840' => 'lsa', 'Lsat_1_v5_gn_8_73460' => 'lsa', 'Lsat_1_v5_gn_8_73481' => 'lsa', 'Lsat_1_v5_gn_9_31601' => 'lsa', 'Lsat_1_v5_gn_9_77320' => 'lsa', 'Manes.01G171300' => 'mes', 'Manes.01G171400' => 'mes', 'Manes.01G236100' => 'mes', 'Manes.02G130500' => 'mes', 'Manes.02G130600' => 'mes', 'Manes.03G180200' => 'mes', 'Manes.05G007000' => 'mes', 'Manes.08G084400' => 'mes', 'Manes.09G092600' => 'mes', 'Manes.15G027900' => 'mes', 'MBI04_g40948_MAGBIO' => 'mbi', 'MBI14_g12123_MAGBIO' => 'mbi', 'MBI18_g28915_MAGBIO' => 'mbi', 'MCO09G053' => 'mco', 'MCO11G782' => 'mco', 'MCO15G215' => 'mco', 'MD03G1088500' => 'mdo', 'MD03G1088600' => 'mdo', 'MD04G1130800' => 'mdo', 'MD09G1291700' => 'mdo', 'MD11G1097500' => 'mdo', 'MD11G1097600' => 'mdo', 'MD12G1143900' => 'mdo', 'MD13G1191400' => 'mdo', 'MD16G1191500' => 'mdo', 'Medtr1g085570' => 'mtr', 'Medtr1g104610' => 'mtr', 'Medtr2g097520' => 'mtr', 'Medtr4g021800' => 'mtr', 'Medtr4g021825' => 'mtr', 'Medtr4g064270' => 'mtr', 'Medtr4g064380' => 'mtr', 'Medtr7g062150' => 'mtr', 'MELO3C003138.2' => 'cme', 'MELO3C005187.2' => 'cme', 'MELO3C009252.2' => 'cme', 'MELO3C014481.2' => 'cme', 'MELO3C020616.2' => 'cme', 'MELO3C020617.2' => 'cme', 'MELO3C020618.2' => 'cme', 'Migut.G00328' => 'egut', 'Migut.J00320' => 'egut', 'Migut.L01000' => 'egut', 'Migut.L01953' => 'egut', 'MSTRG.10253' => 'ama', 'MSTRG.19077' => 'ama', 'MSTRG.26780' => 'ama', 'MSTRG.4023' => 'ama', 'MSTRG.5655' => 'ama', 'MSTRG.9992' => 'ama', 'Nitab4.5_0000043g0310' => 'nta', 'Nitab4.5_0000463g0080' => 'nta', 'Nitab4.5_0000705g0170' => 'nta', 'Nitab4.5_0001326g0060' => 'nta', 'Nitab4.5_0001628g0030' => 'nta', 'Nitab4.5_0002103g0110' => 'nta', 'Nitab4.5_0002946g0030' => 'nta', 'Nitab4.5_0004639g0030' => 'nta', 'Nn2g11149' => 'nnu', 'Nn2g13389' => 'nnu', 'Nn4g25326' => 'nnu', 'Nn4g26290' => 'nnu', 'Nn5g29865' => 'nnu', 'Oeu004163.1' => 'oeu', 'Oeu006901.1' => 'oeu', 'Oeu010096.1' => 'oeu', 'Oeu024340.1' => 'oeu', 'Oeu048369.1' => 'oeu', 'Os01g0973000' => 'osa', 'Os03g0273800' => 'osa', 'Os03g0701200' => 'osa', 'Os03g0834050' => 'osa', 'Os07g0634400' => 'osa', 'Peaxi162Scf00092g01414' => 'pax', 'Peaxi162Scf00165g00818' => 'pax', 'Peaxi162Scf00309g00516' => 'pax', 'Peaxi162Scf00774g00218' => 'pax', 'PGR004G1824' => 'pgr', 'PGR004G2606' => 'pgr', 'PGR031G2716' => 'pgr', 'PGR102G2460' => 'pgr', 'PGR142G2599' => 'pgr', 'PGSC0003DMG400000843' => 'stu', 'PGSC0003DMG400008829' => 'stu', 'PGSC0003DMG400030418' => 'stu', 'PGSC0003DMG400031834' => 'stu', 'PGSC0003DMG401028300' => 'stu', 'PGSC0003DMG402028300' => 'stu', 'Phvul.001G219300' => 'pvu', 'Phvul.007G056000' => 'pvu', 'Phvul.007G208000' => 'pvu', 'Phvul.008G119500' => 'pvu', 'Phvul.010G011200' => 'pvu', 'Phvul.010G014800' => 'pvu', 'Phvul.011G062900' => 'pvu', 'Phvul.L007043' => 'pvu', 'Potri.001G242300' => 'ptr', 'Potri.002G185300' => 'ptr', 'Potri.006G086900' => 'ptr', 'Potri.008G151700' => 'ptr', 'Potri.009G033500' => 'ptr', 'Potri.010G089300' => 'ptr', 'Potri.014G110800' => 'ptr', 'Pp3c27_8130' => 'ppa', 'Pp3c6_27410' => 'ppa', 'PRCOL_00001659' => 'pco', 'PRCOL_00001927' => 'pco', 'PRCOL_00003649' => 'pco', 'Prupe.1G011600' => 'ppe', 'Prupe.3G000800' => 'ppe', 'Prupe.3G001100' => 'ppe', 'Prupe.6G072700' => 'ppe', 'Prupe.6G072800' => 'ppe', 'Prupe.6G257300' => 'ppe', 'Prupe.8G033000' => 'ppe', 'Psat0s2633g0080' => 'psa', 'Psat0s3396g0080' => 'psa', 'Psat0s3396g0200' => 'psa', 'Psat3g139080' => 'psa', 'Psat5g285080' => 'psa', 'Psat6g157760' => 'psa', 'Psat6g208440' => 'psa', 'Psat7g215320' => 'psa', 'Psat7g215400' => 'psa', 'Psat7g235600' => 'psa', 'Psat7g235760' => 'psa', 'PSO063G4603' => 'pso', 'PSO210G0182' => 'pso', 'PSO210G0196' => 'pso', 'PSO339G0394' => 'pso', 'PSO339G4127' => 'pso', 'PSO513G0064' => 'pso', 'PSO761G0079' => 'pso', 'QL01p031003' => 'qlo', 'QL01p031078' => 'qlo', 'QL06p003004' => 'qlo', 'QL07p048731' => 'qlo', 'QL09p037427' => 'qlo', 'RcHm_v2.0_Chr3g0466361' => 'rch', 'RcHm_v2.0_Chr3g0485571' => 'rch', 'RcHm_v2.0_Chr4g0416551' => 'rch', 'RcHm_v2.0_Chr5g0065831' => 'rch', 'Rhsim01G0230500' => 'rsi', 'Rhsim05G0194000' => 'rsi', 'Rhsim08G0250400' => 'rsi', 'Sabra02G0131000' => 'sbr', 'Sabra06G0066300' => 'sbr', 'Sabra08G0115500' => 'sbr', 'Sabra09G0023900' => 'sbr', 'Sabra10G0054000' => 'sbr', 'Sabra14G0081500' => 'sbr', 'Sabra16G0147100' => 'sbr', 'SalBow2G2957' => 'sbo', 'SalBow4G3320' => 'sbo', 'SalBow8G1894' => 'sbo', 'Sc07g0007950' => 'sci', 'Sc12g0001360' => 'sci', 'Sc13g0004330' => 'sci', 'Sc20g0005010' => 'sci', 'Sed0000361' => 'sed', 'Sed0001706' => 'sed', 'Sed0002422' => 'sed', 'Sed0004029' => 'sed', 'Sed0004602' => 'sed', 'Sed0004943' => 'sed', 'Sed0008646' => 'sed', 'Sed0023313' => 'sed', 'Sed0024843' => 'sed', 'SEGI_00081' => 'sgi', 'SEGI_00947' => 'sgi', 'SEGI_04046' => 'sgi', 'SEGI_06880' => 'sgi', 'SEGI_09736' => 'sgi', 'SEGI_12741' => 'sgi', 'SEGI_14530' => 'sgi', 'SEGI_20705' => 'sgi', 'SEGI_26088' => 'sgi', 'SEGI_28323' => 'sgi', 'SEGI_33343' => 'sgi', 'SGA_v2.0_scaffold126G33775' => 'sas', 'SGA_v2.0_scaffold2G01337' => 'sas', 'SGA_v2.0_scaffold38G15006' => 'sas', 'SGA_v2.0_scaffold39G15264' => 'sas', 'SGA_v2.0_scaffold453G51880' => 'sas', 'SHI12696' => 'shi', 'SMO367G1096' => 'smo', 'Solyc01g068630.3' => 'sly', 'Solyc05g011880.3' => 'sly', 'Solyc06g076300.3' => 'sly', 'Solyc09g010940.4' => 'sly', 'Solyc09g075890.3' => 'sly', 'Sopen01g030560' => 'spe', 'Sopen05g006630' => 'spe', 'Sopen06g032720' => 'spe', 'Sopen09g005660' => 'spe', 'Sopen09g030690' => 'spe', 'Sp4g14540' => 'spa', 'Sp4g20030' => 'spa', 'Sp5g01320' => 'spa', 'Sp6g21170' => 'spa', 'Sp6g21180' => 'spa', 'Sp6g21190' => 'spa', 'Sp6g40220' => 'spa', 'TAR362G0122' => 'tar', 'TAR362G1338' => 'tar', 'TAR369G0590' => 'tar', 'TAR371G0824' => 'tar', 'TAR622G1429' => 'tar', 'TAR623G0734' => 'tar', 'TAR625G0441' => 'tar', 'TAR629G0976' => 'tar', 'TAR633G1195' => 'tar', 'TAR636G2660' => 'tar', 'THA.LOC104799440' => 'tha', 'THA.LOC104800966' => 'tha', 'THA.LOC104806559' => 'tha', 'THA.LOC104810765' => 'tha', 'THA.LOC104816266' => 'tha', 'THA.LOC104817419' => 'tha', 'THA.LOC104827021' => 'tha', 'Thecc.01G327400' => 'tca', 'Thecc.04G229200' => 'tca', 'Thecc.05G037400' => 'tca', 'Thecc.09G318600' => 'tca', 'Thecc.09G318700' => 'tca', 'Thhalv10006238m.g' => 'esa', 'Thhalv10014321m.g' => 'esa', 'Thhalv10014335m.g' => 'esa', 'Thhalv10015826m.g' => 'esa', 'Thhalv10017107m.g' => 'esa', 'Thhalv10017180m.g' => 'esa', 'Thhalv10029339m.g' => 'esa', 'TPR.G1699' => 'tpr', 'TPR.G23609' => 'tpr', 'TPR.G3081' => 'tpr', 'TPR.G40397' => 'tpr', 'TPR.G5522' => 'tpr', 'TPR.G5618' => 'tpr', 'TPR.G5626' => 'tpr', 'TWI09G1632' => 'twi', 'TWI23G1230' => 'twi', 'TWI53G1064' => 'twi', 'TWI59G0751' => 'twi', 'TWI74G0947' => 'twi', 'TWI77G0337' => 'twi', 'TWI79G1254' => 'twi', 'unitig_0.g2341' => 'ugi', 'unitig_26.g10006' => 'ugi', 'unitig_26.g10008' => 'ugi', 'unitig_26.g9192' => 'ugi', 'vmacro14547' => 'vma', 'vmacro15333' => 'vma', 'vmacro18743' => 'vma', 'vmacro20166' => 'vma', 'VMungo0331G0523' => 'vmu', 'VMungo0331G1202' => 'vmu', 'VMungo0720G1228' => 'vmu', 'VMungo0720G1514' => 'vmu', 'VMungo1080G0169' => 'vmu', 'VMungo1127G1475' => 'vmu', 'VMungo1383G1208' => 'vmu', 'VMungo1383G1698' => 'vmu', 'Zm00001eb012270' => 'zma', 'Zm00001eb054100' => 'zma', 'Zm00001eb063350' => 'zma', 'Zm00001eb328560' => 'zma', 'Zm00001eb342820' => 'zma', 'Zm00001eb362210' => 'zma', 'Zm00001eb397730' => 'zma', 'Zm00001eb399750' => 'zma' ) $gf_id = 'HOM05D000959' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000959' ) $data_identifier = 'HOM05D000959' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 5, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 5, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 10, 'mbi' => (int) 3, 'mco' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 2, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 3, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 11, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399750' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000959', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '622', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p07100' => 'bna', 'A03p11720' => 'bna', 'A05p08300' => 'bna', 'A05p13380' => 'bna', 'A09p54130' => 'bna', 'A10p16690' => 'bna', 'A10p16700' => 'bna', 'A10p33390' => 'bna', 'Aa31LG10G16020' => 'aar', 'Aa31LG1G11810' => 'aar', 'Aa31LG1G11830' => 'aar', 'Aa31LG1G22510' => 'aar', 'Aa31LG5G4890' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5793' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2310' => 'aag', 'Actinidia08499' => 'ach', 'Actinidia11262' => 'ach', 'Actinidia23926' => 'ach', 'Actinidia34420' => 'ach', 'Actinidia36970' => 'ach', 'Ah.02g111220' => 'amhyb', 'Ah.15g097750' => 'amhyb', 'AL4G27500' => 'aly', 'AL6G11470' => 'aly', 'AL8G35950' => 'aly', 'AL8G35960' => 'aly', 'AL8G35970' => 'aly', 'Aqoxy1G00912' => 'aox', 'Aqoxy2G02253' => 'aox', 'Aqoxy2G02411' => 'aox', 'Aqoxy5G00485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BZ66YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K8ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM4FUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6BF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HFV7XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25JBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0YNNV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MAKK6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P70IT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP2Z6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V61LZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YWP64R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3S9AI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7PGHH' => 'arhy', 'AT2G32150' => 'ath', 'AT3G62040' => 'ath', 'AT5G02230' => 'ath', 'AT5G59480' => 'ath', 'AT5G59490' => 'ath', 'ATR0332G060' => 'atr', 'ATR0559G190' => 'atr', 'ATR0693G294' => 'atr', 'Atru.chr3.3975' => 'acertr', 'Atru.chr3.3976' => 'acertr', 'Atru.chr3.3977' => 'acertr', 'Atru.chr4.2498' => 'acertr', 'Atru.chr5.838' => 'acertr', 'Atru.chr8.1990' => 'acertr', 'Atru.chr8.1991' => 'acertr', 'Atru.chr8.1992' => 'acertr', 'AUR62001759' => 'cqu', 'AUR62009545' => 'cqu', 'AUR62010474' => 'cqu', 'AUR62025820' => 'cqu', 'AUR62030422' => 'cqu', 'AUR62033605' => 'cqu', 'AUR62038615' => 'cqu', 'AUR62041347' => 'cqu', 'BcaB01g04574' => 'bca', 'BcaB02g09263' => 'bca', 'BcaB02g10453' => 'bca', 'BcaB05g22513' => 'bca', 'BcaB08g36253' => 'bca', 'BcaB08g36254' => 'bca', 'BcaC01g06519' => 'bca', 'BcaC02g11889' => 'bca', 'BcaC03g14010' => 'bca', 'BcaC03g18439' => 'bca', 'BcaC04g19765' => 'bca', 'BcaC09g48432' => 'bca', 'BcaNung07302' => 'bca', 'BolC2t06040H' => 'bol', 'BolC2t07346H' => 'bol', 'BolC3t13817H' => 'bol', 'BolC4t22625H' => 'bol', 'BolC4t23297H' => 'bol', 'BolC8t51278H' => 'bol', 'BolC9t58050H' => 'bol', 'BolC9t58051H' => 'bol', 'BolC9t60163H' => 'bol', 'BraA02t04712Z' => 'bra', 'BraA02t05791Z' => 'bra', 'BraA03t10483Z' => 'bra', 'BraA05t19795Z' => 'bra', 'BraA05t20276Z' => 'bra', 'BraA09t40827Z' => 'bra', 'BraA10t43750Z' => 'bra', 'BraA10t43751Z' => 'bra', 'BraA10t45370Z' => 'bra', 'C02p00400' => 'bna', 'C02p12460' => 'bna', 'C03p13680' => 'bna', 'C04p10270' => 'bna', 'C04p17500' => 'bna', 'C08p37010' => 'bna', 'C09p51880' => 'bna', 'C09p51890' => 'bna', 'C09p74300' => 'bna', 'CAN.G179.26' => 'can', 'CAN.G3384.1' => 'can', 'CAN.G394.68' => 'can', 'CAN.G907.13' => 'can', 'CANSAT11G0012' => 'cansat', 'CANSAT25G1586' => 'cansat', 'CANSAT35G0735' => 'cansat', 'CANSAT54G0556' => 'cansat', 'CANSAT64G0356' => 'cansat', 'CANSAT78G2042' => 'cansat', 'CARHR125920' => 'chi', 'CARHR131910' => 'chi', 'CARHR172390' => 'chi', 'CARHR211140' => 'chi', 'CARHR285850' => 'chi', 'CARHR285860' => 'chi', 'Carub.0004s1347' => 'cru', 'Carub.0004s1960' => 'cru', 'Carub.0005s2880' => 'cru', 'Carub.0006s0107' => 'cru', 'Carub.0008s2015' => 'cru', 'Carub.0008s2016' => 'cru', 'Carub.0008s2017' => 'cru', 'Ca_01315_v3' => 'car', 'Ca_05063_v3' => 'car', 'Ca_10231_v3' => 'car', 'Ca_10913_v3' => 'car', 'Ca_19156_v3' => 'car', 'Ca_23644_v3' => 'car', 'Ca_26735_v3' => 'car', 'Cc01_g13130' => 'ccan', 'Cc02_g21690' => 'ccan', 'Cc03_g03600' => 'ccan', 'Cc06_g02510' => 'ccan', 'CDE02G1265' => 'cde', 'CDE05G0415' => 'cde', 'CDE08G1082' => 'cde', 'Cfa005780' => 'cfa', 'Cfa011522' => 'cfa', 'Cfa011523' => 'cfa', 'Cfa015627' => 'cfa', 'Cfa017359' => 'cfa', 'Ciclev10005687m.g' => 'ccl', 'Ciclev10012173m.g' => 'ccl', 'Ciclev10021621m.g' => 'ccl', 'Ciclev10028968m.g' => 'ccl', 'Ciclev10029907m.g' => 'ccl', 'CiPaw.01G164800' => 'cil', 'CiPaw.07G083700' => 'cil', 'CiPaw.07G127000' => 'cil', 'CiPaw.07G136900' => 'cil', 'CiPaw.08G081700' => 'cil', 'CiPaw.09G194600' => 'cil', 'CiPaw.10G146500' => 'cil', 'CiPaw.13G091500' => 'cil', 'CiPaw.13G091600' => 'cil', 'ClCG00G003390' => 'cla', 'ClCG01G007220' => 'cla', 'ClCG03G001370' => 'cla', 'ClCG04G008100' => 'cla', 'ClCG06G006110' => 'cla', 'ClCG06G006130' => 'cla', 'ClCG10G021210' => 'cla', 'COL.COLO4_07648' => 'col', 'COL.COLO4_07650' => 'col', 'COL.COLO4_07651' => 'col', 'COL.COLO4_14780' => 'col', 'COL.COLO4_18546' => 'col', 'COL.COLO4_18547' => 'col', 'COL.COLO4_23103' => 'col', 'COL.COLO4_30419' => 'col', 'COL.COLO4_34232' => 'col', 'Cpa.g.sc169.20' => 'cpa', 'Cpa.g.sc57.45' => 'cpa', 'Cpa.g.sc58.124' => 'cpa', 'Cpa.g.sc58.125' => 'cpa', 'Cpa.g.sc81.118' => 'cpa', 'Cpa.g.sc81.119' => 'cpa', 'Cre12.g524700' => 'cre', 'CsaV3_1G034430' => 'csa', 'CsaV3_1G034440' => 'csa', 'CsaV3_1G034450' => 'csa', 'CsaV3_3G034830' => 'csa', 'CsaV3_4G025090' => 'csa', 'CsaV3_5G018660' => 'csa', 'CsaV3_6G038160' => 'csa', 'CSS0003447' => 'camsi', 'CSS0017840' => 'camsi', 'CSS0019260' => 'camsi', 'CSS0040375' => 'camsi', 'CSS0042533' => 'camsi', 'DCAR_005960' => 'dca', 'DCAR_012104' => 'dca', 'DCAR_012105' => 'dca', 'DCAR_012293' => 'dca', 'DCAR_015632' => 'dca', 'DCAR_024602' => 'dca', 'DCAR_028752' => 'dca', 'Dinv06261' => 'din', 'Dinv13982' => 'din', 'Dinv17029' => 'din', 'Dinv18463' => 'din', 'Dinv33181' => 'din', 'Dinv35585' => 'din', 'Dinv37161' => 'din', 'Dinv42977' => 'din', 'Dinv43122' => 'din', 'Dinv44517' => 'din', 'Duzib093G0256' => 'dzi', 'Duzib106G1254' => 'dzi', 'Duzib128G1789' => 'dzi', 'Duzib133G0633' => 'dzi', 'Duzib138G0510' => 'dzi', 'Duzib150G1084' => 'dzi', 'Duzib168G0488' => 'dzi', 'Duzib168G1523' => 'dzi', 'Duzib170G0133' => 'dzi', 'ECA234G1433' => 'eca', 'ECA236G1432' => 'eca', 'ECA236G2256' => 'eca', 'ECA236G2365' => 'eca', 'ECA236G4830' => 'eca', 'ECA248G1505' => 'eca', 'EL10Ac3g06431' => 'bvu', 'EL10Ac5g12577' => 'bvu', 'EL10Ac6g13533' => 'bvu', 'EL10Ac7g16045' => 'bvu', 'Eucgr.A01281' => 'egr', 'Eucgr.B02326' => 'egr', 'Eucgr.H03532' => 'egr', 'Eucgr.K00553' => 'egr', 'Eucgr.K03116' => 'egr', 'FAN02G3963' => 'fan', 'FAN05G0438' => 'fan', 'FAN09G2434' => 'fan', 'FAN12G3984' => 'fan', 'FAN14G0798' => 'fan', 'FAN17G0652' => 'fan', 'FAN19G1988' => 'fan', 'FAN22G0632' => 'fan', 'FAN23G0387' => 'fan', 'FAN26G1323' => 'fan', 'FAN28G0666' => 'fan', 'FvH4_1g26080' => 'fve', 'FvH4_3g36780' => 'fve', 'FvH4_4g15270' => 'fve', 'FvH4_6g13490' => 'fve', 'Glyma.01G098700' => 'gma', 'Glyma.03G065900' => 'gma', 'Glyma.03G073754' => 'gma', 'Glyma.03G073758' => 'gma', 'Glyma.03G083200' => 'gma', 'Glyma.03G225500' => 'gma', 'Glyma.05G037766' => 'gma', 'Glyma.07G133500' => 'gma', 'Glyma.10G139400' => 'gma', 'Glyma.10G248900' => 'gma', 'Glyma.11G137800' => 'gma', 'Glyma.12G061300' => 'gma', 'Glyma.13G337900' => 'gma', 'Glyma.15G036600' => 'gma', 'Glyma.18G182800' => 'gma', 'Glyma.19G222500' => 'gma', 'Glyma.20G144800' => 'gma', 'Gohir.A01G222000' => 'ghi', 'Gohir.A03G044000' => 'ghi', 'Gohir.A03G044100' => 'ghi', 'Gohir.A04G083100' => 'ghi', 'Gohir.A07G127200' => 'ghi', 'Gohir.A07G132400' => 'ghi', 'Gohir.A08G000700' => 'ghi', 'Gohir.A11G327300' => 'ghi', 'Gohir.D01G211500' => 'ghi', 'Gohir.D03G123400' => 'ghi', 'Gohir.D03G123500' => 'ghi', 'Gohir.D04G121800' => 'ghi', 'Gohir.D07G131500' => 'ghi', 'Gohir.D07G136600' => 'ghi', 'Gohir.D08G011600' => 'ghi', 'Gohir.D11G346200' => 'ghi', 'Gorai.001G142800' => 'gra', 'Gorai.001G148700' => 'gra', 'Gorai.002G257300' => 'gra', 'Gorai.003G130000' => 'gra', 'Gorai.003G130100' => 'gra', 'Gorai.004G005300' => 'gra', 'Gorai.007G376500' => 'gra', 'Gorai.012G104700' => 'gra', 'GSVIVG01017946001' => 'vvi', 'GSVIVG01024928001' => 'vvi', 'GSVIVG01028227001' => 'vvi', 'GSVIVG01034151001' => 'vvi', 'HanXRQChr05g0135031' => 'han', 'HanXRQChr05g0135041' => 'han', 'HanXRQChr05g0140021' => 'han', 'HanXRQChr06g0178981' => 'han', 'HanXRQChr07g0188251' => 'han', 'HanXRQChr08g0235311' => 'han', 'HanXRQChr09g0271011' => 'han', 'HanXRQChr10g0293321' => 'han', 'HanXRQChr13g0388171' => 'han', 'Haze_00916' => 'cav', 'Haze_05063' => 'cav', 'Haze_20814' => 'cav', 'Haze_24128' => 'cav', 'Hma1.2p1_0745F.1_g212010' => 'hma', 'Hma1.2p1_0757F.1_g213260' => 'hma', 'Hma1.2p1_0936F.1_g238840' => 'hma', 'Hma1.2p1_1735F.1_g299890' => 'hma', 'Hma1.2p1_1861F.1_g305685' => 'hma', 'HPP92_003397' => 'vpl', 'HPP92_012597' => 'vpl', 'HPP92_015520' => 'vpl', 'HPP92_015539' => 'vpl', 'HPP92_020373' => 'vpl', 'Hund04938' => 'sun', 'Hund10677' => 'sun', 'Hund11033' => 'sun', 'Hund12155' => 'sun', 'Lalb_Chr01g0022551' => 'lal', 'Lalb_Chr03g0042341' => 'lal', 'Lalb_Chr07g0192931' => 'lal', 'Lalb_Chr12g0209551' => 'lal', 'Lalb_Chr19g0125251' => 'lal', 'Lalb_Chr19g0137891' => 'lal', 'Lalb_Chr21g0304641' => 'lal', 'Lalb_Chr21g0309881' => 'lal', 'Lj1A5T12' => 'lonja', 'Lj1C148G10' => 'lonja', 'Lj2A93T83' => 'lonja', 'Lj3A738G68' => 'lonja', 'Lj3C966T1' => 'lonja', 'Lj3g0018958' => 'lja', 'Lj3g0021831' => 'lja', 'Lj3g0025443' => 'lja', 'Lj4g0026809' => 'lja', 'Lj5g0012558' => 'lja', 'Lj5g0021586' => 'lja', 'Lsat_1_v5_gn_5_156840' => 'lsa', 'Lsat_1_v5_gn_8_73460' => 'lsa', 'Lsat_1_v5_gn_8_73481' => 'lsa', 'Lsat_1_v5_gn_9_31601' => 'lsa', 'Lsat_1_v5_gn_9_77320' => 'lsa', 'Manes.01G171300' => 'mes', 'Manes.01G171400' => 'mes', 'Manes.01G236100' => 'mes', 'Manes.02G130500' => 'mes', 'Manes.02G130600' => 'mes', 'Manes.03G180200' => 'mes', 'Manes.05G007000' => 'mes', 'Manes.08G084400' => 'mes', 'Manes.09G092600' => 'mes', 'Manes.15G027900' => 'mes', 'MBI04_g40948_MAGBIO' => 'mbi', 'MBI14_g12123_MAGBIO' => 'mbi', 'MBI18_g28915_MAGBIO' => 'mbi', 'MCO09G053' => 'mco', 'MCO11G782' => 'mco', 'MCO15G215' => 'mco', 'MD03G1088500' => 'mdo', 'MD03G1088600' => 'mdo', 'MD04G1130800' => 'mdo', 'MD09G1291700' => 'mdo', 'MD11G1097500' => 'mdo', 'MD11G1097600' => 'mdo', 'MD12G1143900' => 'mdo', 'MD13G1191400' => 'mdo', 'MD16G1191500' => 'mdo', 'Medtr1g085570' => 'mtr', 'Medtr1g104610' => 'mtr', 'Medtr2g097520' => 'mtr', 'Medtr4g021800' => 'mtr', 'Medtr4g021825' => 'mtr', 'Medtr4g064270' => 'mtr', 'Medtr4g064380' => 'mtr', 'Medtr7g062150' => 'mtr', 'MELO3C003138.2' => 'cme', 'MELO3C005187.2' => 'cme', 'MELO3C009252.2' => 'cme', 'MELO3C014481.2' => 'cme', 'MELO3C020616.2' => 'cme', 'MELO3C020617.2' => 'cme', 'MELO3C020618.2' => 'cme', 'Migut.G00328' => 'egut', 'Migut.J00320' => 'egut', 'Migut.L01000' => 'egut', 'Migut.L01953' => 'egut', 'MSTRG.10253' => 'ama', 'MSTRG.19077' => 'ama', 'MSTRG.26780' => 'ama', 'MSTRG.4023' => 'ama', 'MSTRG.5655' => 'ama', 'MSTRG.9992' => 'ama', 'Nitab4.5_0000043g0310' => 'nta', 'Nitab4.5_0000463g0080' => 'nta', 'Nitab4.5_0000705g0170' => 'nta', 'Nitab4.5_0001326g0060' => 'nta', 'Nitab4.5_0001628g0030' => 'nta', 'Nitab4.5_0002103g0110' => 'nta', 'Nitab4.5_0002946g0030' => 'nta', 'Nitab4.5_0004639g0030' => 'nta', 'Nn2g11149' => 'nnu', 'Nn2g13389' => 'nnu', 'Nn4g25326' => 'nnu', 'Nn4g26290' => 'nnu', 'Nn5g29865' => 'nnu', 'Oeu004163.1' => 'oeu', 'Oeu006901.1' => 'oeu', 'Oeu010096.1' => 'oeu', 'Oeu024340.1' => 'oeu', 'Oeu048369.1' => 'oeu', 'Os01g0973000' => 'osa', 'Os03g0273800' => 'osa', 'Os03g0701200' => 'osa', 'Os03g0834050' => 'osa', 'Os07g0634400' => 'osa', 'Peaxi162Scf00092g01414' => 'pax', 'Peaxi162Scf00165g00818' => 'pax', 'Peaxi162Scf00309g00516' => 'pax', 'Peaxi162Scf00774g00218' => 'pax', 'PGR004G1824' => 'pgr', 'PGR004G2606' => 'pgr', 'PGR031G2716' => 'pgr', 'PGR102G2460' => 'pgr', 'PGR142G2599' => 'pgr', 'PGSC0003DMG400000843' => 'stu', 'PGSC0003DMG400008829' => 'stu', 'PGSC0003DMG400030418' => 'stu', 'PGSC0003DMG400031834' => 'stu', 'PGSC0003DMG401028300' => 'stu', 'PGSC0003DMG402028300' => 'stu', 'Phvul.001G219300' => 'pvu', 'Phvul.007G056000' => 'pvu', 'Phvul.007G208000' => 'pvu', 'Phvul.008G119500' => 'pvu', 'Phvul.010G011200' => 'pvu', 'Phvul.010G014800' => 'pvu', 'Phvul.011G062900' => 'pvu', 'Phvul.L007043' => 'pvu', 'Potri.001G242300' => 'ptr', 'Potri.002G185300' => 'ptr', 'Potri.006G086900' => 'ptr', 'Potri.008G151700' => 'ptr', 'Potri.009G033500' => 'ptr', 'Potri.010G089300' => 'ptr', 'Potri.014G110800' => 'ptr', 'Pp3c27_8130' => 'ppa', 'Pp3c6_27410' => 'ppa', 'PRCOL_00001659' => 'pco', 'PRCOL_00001927' => 'pco', 'PRCOL_00003649' => 'pco', 'Prupe.1G011600' => 'ppe', 'Prupe.3G000800' => 'ppe', 'Prupe.3G001100' => 'ppe', 'Prupe.6G072700' => 'ppe', 'Prupe.6G072800' => 'ppe', 'Prupe.6G257300' => 'ppe', 'Prupe.8G033000' => 'ppe', 'Psat0s2633g0080' => 'psa', 'Psat0s3396g0080' => 'psa', 'Psat0s3396g0200' => 'psa', 'Psat3g139080' => 'psa', 'Psat5g285080' => 'psa', 'Psat6g157760' => 'psa', 'Psat6g208440' => 'psa', 'Psat7g215320' => 'psa', 'Psat7g215400' => 'psa', 'Psat7g235600' => 'psa', 'Psat7g235760' => 'psa', 'PSO063G4603' => 'pso', 'PSO210G0182' => 'pso', 'PSO210G0196' => 'pso', 'PSO339G0394' => 'pso', 'PSO339G4127' => 'pso', 'PSO513G0064' => 'pso', 'PSO761G0079' => 'pso', 'QL01p031003' => 'qlo', 'QL01p031078' => 'qlo', 'QL06p003004' => 'qlo', 'QL07p048731' => 'qlo', 'QL09p037427' => 'qlo', 'RcHm_v2.0_Chr3g0466361' => 'rch', 'RcHm_v2.0_Chr3g0485571' => 'rch', 'RcHm_v2.0_Chr4g0416551' => 'rch', 'RcHm_v2.0_Chr5g0065831' => 'rch', 'Rhsim01G0230500' => 'rsi', 'Rhsim05G0194000' => 'rsi', 'Rhsim08G0250400' => 'rsi', 'Sabra02G0131000' => 'sbr', 'Sabra06G0066300' => 'sbr', 'Sabra08G0115500' => 'sbr', 'Sabra09G0023900' => 'sbr', 'Sabra10G0054000' => 'sbr', 'Sabra14G0081500' => 'sbr', 'Sabra16G0147100' => 'sbr', 'SalBow2G2957' => 'sbo', 'SalBow4G3320' => 'sbo', 'SalBow8G1894' => 'sbo', 'Sc07g0007950' => 'sci', 'Sc12g0001360' => 'sci', 'Sc13g0004330' => 'sci', 'Sc20g0005010' => 'sci', 'Sed0000361' => 'sed', 'Sed0001706' => 'sed', 'Sed0002422' => 'sed', 'Sed0004029' => 'sed', 'Sed0004602' => 'sed', 'Sed0004943' => 'sed', 'Sed0008646' => 'sed', 'Sed0023313' => 'sed', 'Sed0024843' => 'sed', 'SEGI_00081' => 'sgi', 'SEGI_00947' => 'sgi', 'SEGI_04046' => 'sgi', 'SEGI_06880' => 'sgi', 'SEGI_09736' => 'sgi', 'SEGI_12741' => 'sgi', 'SEGI_14530' => 'sgi', 'SEGI_20705' => 'sgi', 'SEGI_26088' => 'sgi', 'SEGI_28323' => 'sgi', 'SEGI_33343' => 'sgi', 'SGA_v2.0_scaffold126G33775' => 'sas', 'SGA_v2.0_scaffold2G01337' => 'sas', 'SGA_v2.0_scaffold38G15006' => 'sas', 'SGA_v2.0_scaffold39G15264' => 'sas', 'SGA_v2.0_scaffold453G51880' => 'sas', 'SHI12696' => 'shi', 'SMO367G1096' => 'smo', 'Solyc01g068630.3' => 'sly', 'Solyc05g011880.3' => 'sly', 'Solyc06g076300.3' => 'sly', 'Solyc09g010940.4' => 'sly', 'Solyc09g075890.3' => 'sly', 'Sopen01g030560' => 'spe', 'Sopen05g006630' => 'spe', 'Sopen06g032720' => 'spe', 'Sopen09g005660' => 'spe', 'Sopen09g030690' => 'spe', 'Sp4g14540' => 'spa', 'Sp4g20030' => 'spa', 'Sp5g01320' => 'spa', 'Sp6g21170' => 'spa', 'Sp6g21180' => 'spa', 'Sp6g21190' => 'spa', 'Sp6g40220' => 'spa', 'TAR362G0122' => 'tar', 'TAR362G1338' => 'tar', 'TAR369G0590' => 'tar', 'TAR371G0824' => 'tar', 'TAR622G1429' => 'tar', 'TAR623G0734' => 'tar', 'TAR625G0441' => 'tar', 'TAR629G0976' => 'tar', 'TAR633G1195' => 'tar', 'TAR636G2660' => 'tar', 'THA.LOC104799440' => 'tha', 'THA.LOC104800966' => 'tha', 'THA.LOC104806559' => 'tha', 'THA.LOC104810765' => 'tha', 'THA.LOC104816266' => 'tha', 'THA.LOC104817419' => 'tha', 'THA.LOC104827021' => 'tha', 'Thecc.01G327400' => 'tca', 'Thecc.04G229200' => 'tca', 'Thecc.05G037400' => 'tca', 'Thecc.09G318600' => 'tca', 'Thecc.09G318700' => 'tca', 'Thhalv10006238m.g' => 'esa', 'Thhalv10014321m.g' => 'esa', 'Thhalv10014335m.g' => 'esa', 'Thhalv10015826m.g' => 'esa', 'Thhalv10017107m.g' => 'esa', 'Thhalv10017180m.g' => 'esa', 'Thhalv10029339m.g' => 'esa', 'TPR.G1699' => 'tpr', 'TPR.G23609' => 'tpr', 'TPR.G3081' => 'tpr', 'TPR.G40397' => 'tpr', 'TPR.G5522' => 'tpr', 'TPR.G5618' => 'tpr', 'TPR.G5626' => 'tpr', 'TWI09G1632' => 'twi', 'TWI23G1230' => 'twi', 'TWI53G1064' => 'twi', 'TWI59G0751' => 'twi', 'TWI74G0947' => 'twi', 'TWI77G0337' => 'twi', 'TWI79G1254' => 'twi', 'unitig_0.g2341' => 'ugi', 'unitig_26.g10006' => 'ugi', 'unitig_26.g10008' => 'ugi', 'unitig_26.g9192' => 'ugi', 'vmacro14547' => 'vma', 'vmacro15333' => 'vma', 'vmacro18743' => 'vma', 'vmacro20166' => 'vma', 'VMungo0331G0523' => 'vmu', 'VMungo0331G1202' => 'vmu', 'VMungo0720G1228' => 'vmu', 'VMungo0720G1514' => 'vmu', 'VMungo1080G0169' => 'vmu', 'VMungo1127G1475' => 'vmu', 'VMungo1383G1208' => 'vmu', 'VMungo1383G1698' => 'vmu', 'Zm00001eb012270' => 'zma', 'Zm00001eb054100' => 'zma', 'Zm00001eb063350' => 'zma', 'Zm00001eb328560' => 'zma', 'Zm00001eb342820' => 'zma', 'Zm00001eb362210' => 'zma', 'Zm00001eb397730' => 'zma', 'Zm00001eb399750' => 'zma' ), 'gf_id' => 'HOM05D000959', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000959' ), 'data_identifier' => 'HOM05D000959', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000959', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '622', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p07100' => 'bna', 'A03p11720' => 'bna', 'A05p08300' => 'bna', 'A05p13380' => 'bna', 'A09p54130' => 'bna', 'A10p16690' => 'bna', 'A10p16700' => 'bna', 'A10p33390' => 'bna', 'Aa31LG10G16020' => 'aar', 'Aa31LG1G11810' => 'aar', 'Aa31LG1G11830' => 'aar', 'Aa31LG1G22510' => 'aar', 'Aa31LG5G4890' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5793' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2310' => 'aag', 'Actinidia08499' => 'ach', 'Actinidia11262' => 'ach', 'Actinidia23926' => 'ach', 'Actinidia34420' => 'ach', 'Actinidia36970' => 'ach', 'Ah.02g111220' => 'amhyb', 'Ah.15g097750' => 'amhyb', 'AL4G27500' => 'aly', 'AL6G11470' => 'aly', 'AL8G35950' => 'aly', 'AL8G35960' => 'aly', 'AL8G35970' => 'aly', 'Aqoxy1G00912' => 'aox', 'Aqoxy2G02253' => 'aox', 'Aqoxy2G02411' => 'aox', 'Aqoxy5G00485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BZ66YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K8ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM4FUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6BF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HFV7XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25JBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0YNNV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MAKK6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P70IT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP2Z6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V61LZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YWP64R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3S9AI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7PGHH' => 'arhy', 'AT2G32150' => 'ath', 'AT3G62040' => 'ath', 'AT5G02230' => 'ath', 'AT5G59480' => 'ath', 'AT5G59490' => 'ath', 'ATR0332G060' => 'atr', 'ATR0559G190' => 'atr', 'ATR0693G294' => 'atr', 'Atru.chr3.3975' => 'acertr', 'Atru.chr3.3976' => 'acertr', 'Atru.chr3.3977' => 'acertr', 'Atru.chr4.2498' => 'acertr', 'Atru.chr5.838' => 'acertr', 'Atru.chr8.1990' => 'acertr', 'Atru.chr8.1991' => 'acertr', 'Atru.chr8.1992' => 'acertr', 'AUR62001759' => 'cqu', 'AUR62009545' => 'cqu', 'AUR62010474' => 'cqu', 'AUR62025820' => 'cqu', 'AUR62030422' => 'cqu', 'AUR62033605' => 'cqu', 'AUR62038615' => 'cqu', 'AUR62041347' => 'cqu', 'BcaB01g04574' => 'bca', 'BcaB02g09263' => 'bca', 'BcaB02g10453' => 'bca', 'BcaB05g22513' => 'bca', 'BcaB08g36253' => 'bca', 'BcaB08g36254' => 'bca', 'BcaC01g06519' => 'bca', 'BcaC02g11889' => 'bca', 'BcaC03g14010' => 'bca', 'BcaC03g18439' => 'bca', 'BcaC04g19765' => 'bca', 'BcaC09g48432' => 'bca', 'BcaNung07302' => 'bca', 'BolC2t06040H' => 'bol', 'BolC2t07346H' => 'bol', 'BolC3t13817H' => 'bol', 'BolC4t22625H' => 'bol', 'BolC4t23297H' => 'bol', 'BolC8t51278H' => 'bol', 'BolC9t58050H' => 'bol', 'BolC9t58051H' => 'bol', 'BolC9t60163H' => 'bol', 'BraA02t04712Z' => 'bra', 'BraA02t05791Z' => 'bra', 'BraA03t10483Z' => 'bra', 'BraA05t19795Z' => 'bra', 'BraA05t20276Z' => 'bra', 'BraA09t40827Z' => 'bra', 'BraA10t43750Z' => 'bra', 'BraA10t43751Z' => 'bra', 'BraA10t45370Z' => 'bra', 'C02p00400' => 'bna', 'C02p12460' => 'bna', 'C03p13680' => 'bna', 'C04p10270' => 'bna', 'C04p17500' => 'bna', 'C08p37010' => 'bna', 'C09p51880' => 'bna', 'C09p51890' => 'bna', 'C09p74300' => 'bna', 'CAN.G179.26' => 'can', 'CAN.G3384.1' => 'can', 'CAN.G394.68' => 'can', 'CAN.G907.13' => 'can', 'CANSAT11G0012' => 'cansat', 'CANSAT25G1586' => 'cansat', 'CANSAT35G0735' => 'cansat', 'CANSAT54G0556' => 'cansat', 'CANSAT64G0356' => 'cansat', 'CANSAT78G2042' => 'cansat', 'CARHR125920' => 'chi', 'CARHR131910' => 'chi', 'CARHR172390' => 'chi', 'CARHR211140' => 'chi', 'CARHR285850' => 'chi', 'CARHR285860' => 'chi', 'Carub.0004s1347' => 'cru', 'Carub.0004s1960' => 'cru', 'Carub.0005s2880' => 'cru', 'Carub.0006s0107' => 'cru', 'Carub.0008s2015' => 'cru', 'Carub.0008s2016' => 'cru', 'Carub.0008s2017' => 'cru', 'Ca_01315_v3' => 'car', 'Ca_05063_v3' => 'car', 'Ca_10231_v3' => 'car', 'Ca_10913_v3' => 'car', 'Ca_19156_v3' => 'car', 'Ca_23644_v3' => 'car', 'Ca_26735_v3' => 'car', 'Cc01_g13130' => 'ccan', 'Cc02_g21690' => 'ccan', 'Cc03_g03600' => 'ccan', 'Cc06_g02510' => 'ccan', 'CDE02G1265' => 'cde', 'CDE05G0415' => 'cde', 'CDE08G1082' => 'cde', 'Cfa005780' => 'cfa', 'Cfa011522' => 'cfa', 'Cfa011523' => 'cfa', 'Cfa015627' => 'cfa', 'Cfa017359' => 'cfa', 'Ciclev10005687m.g' => 'ccl', 'Ciclev10012173m.g' => 'ccl', 'Ciclev10021621m.g' => 'ccl', 'Ciclev10028968m.g' => 'ccl', 'Ciclev10029907m.g' => 'ccl', 'CiPaw.01G164800' => 'cil', 'CiPaw.07G083700' => 'cil', 'CiPaw.07G127000' => 'cil', 'CiPaw.07G136900' => 'cil', 'CiPaw.08G081700' => 'cil', 'CiPaw.09G194600' => 'cil', 'CiPaw.10G146500' => 'cil', 'CiPaw.13G091500' => 'cil', 'CiPaw.13G091600' => 'cil', 'ClCG00G003390' => 'cla', 'ClCG01G007220' => 'cla', 'ClCG03G001370' => 'cla', 'ClCG04G008100' => 'cla', 'ClCG06G006110' => 'cla', 'ClCG06G006130' => 'cla', 'ClCG10G021210' => 'cla', 'COL.COLO4_07648' => 'col', 'COL.COLO4_07650' => 'col', 'COL.COLO4_07651' => 'col', 'COL.COLO4_14780' => 'col', 'COL.COLO4_18546' => 'col', 'COL.COLO4_18547' => 'col', 'COL.COLO4_23103' => 'col', 'COL.COLO4_30419' => 'col', 'COL.COLO4_34232' => 'col', 'Cpa.g.sc169.20' => 'cpa', 'Cpa.g.sc57.45' => 'cpa', 'Cpa.g.sc58.124' => 'cpa', 'Cpa.g.sc58.125' => 'cpa', 'Cpa.g.sc81.118' => 'cpa', 'Cpa.g.sc81.119' => 'cpa', 'Cre12.g524700' => 'cre', 'CsaV3_1G034430' => 'csa', 'CsaV3_1G034440' => 'csa', 'CsaV3_1G034450' => 'csa', 'CsaV3_3G034830' => 'csa', 'CsaV3_4G025090' => 'csa', 'CsaV3_5G018660' => 'csa', 'CsaV3_6G038160' => 'csa', 'CSS0003447' => 'camsi', 'CSS0017840' => 'camsi', 'CSS0019260' => 'camsi', 'CSS0040375' => 'camsi', 'CSS0042533' => 'camsi', 'DCAR_005960' => 'dca', 'DCAR_012104' => 'dca', 'DCAR_012105' => 'dca', 'DCAR_012293' => 'dca', 'DCAR_015632' => 'dca', 'DCAR_024602' => 'dca', 'DCAR_028752' => 'dca', 'Dinv06261' => 'din', 'Dinv13982' => 'din', 'Dinv17029' => 'din', 'Dinv18463' => 'din', 'Dinv33181' => 'din', 'Dinv35585' => 'din', 'Dinv37161' => 'din', 'Dinv42977' => 'din', 'Dinv43122' => 'din', 'Dinv44517' => 'din', 'Duzib093G0256' => 'dzi', 'Duzib106G1254' => 'dzi', 'Duzib128G1789' => 'dzi', 'Duzib133G0633' => 'dzi', 'Duzib138G0510' => 'dzi', 'Duzib150G1084' => 'dzi', 'Duzib168G0488' => 'dzi', 'Duzib168G1523' => 'dzi', 'Duzib170G0133' => 'dzi', 'ECA234G1433' => 'eca', 'ECA236G1432' => 'eca', 'ECA236G2256' => 'eca', 'ECA236G2365' => 'eca', 'ECA236G4830' => 'eca', 'ECA248G1505' => 'eca', 'EL10Ac3g06431' => 'bvu', 'EL10Ac5g12577' => 'bvu', 'EL10Ac6g13533' => 'bvu', 'EL10Ac7g16045' => 'bvu', 'Eucgr.A01281' => 'egr', 'Eucgr.B02326' => 'egr', 'Eucgr.H03532' => 'egr', 'Eucgr.K00553' => 'egr', 'Eucgr.K03116' => 'egr', 'FAN02G3963' => 'fan', 'FAN05G0438' => 'fan', 'FAN09G2434' => 'fan', 'FAN12G3984' => 'fan', 'FAN14G0798' => 'fan', 'FAN17G0652' => 'fan', 'FAN19G1988' => 'fan', 'FAN22G0632' => 'fan', 'FAN23G0387' => 'fan', 'FAN26G1323' => 'fan', 'FAN28G0666' => 'fan', 'FvH4_1g26080' => 'fve', 'FvH4_3g36780' => 'fve', 'FvH4_4g15270' => 'fve', 'FvH4_6g13490' => 'fve', 'Glyma.01G098700' => 'gma', 'Glyma.03G065900' => 'gma', 'Glyma.03G073754' => 'gma', 'Glyma.03G073758' => 'gma', 'Glyma.03G083200' => 'gma', 'Glyma.03G225500' => 'gma', 'Glyma.05G037766' => 'gma', 'Glyma.07G133500' => 'gma', 'Glyma.10G139400' => 'gma', 'Glyma.10G248900' => 'gma', 'Glyma.11G137800' => 'gma', 'Glyma.12G061300' => 'gma', 'Glyma.13G337900' => 'gma', 'Glyma.15G036600' => 'gma', 'Glyma.18G182800' => 'gma', 'Glyma.19G222500' => 'gma', 'Glyma.20G144800' => 'gma', 'Gohir.A01G222000' => 'ghi', 'Gohir.A03G044000' => 'ghi', 'Gohir.A03G044100' => 'ghi', 'Gohir.A04G083100' => 'ghi', 'Gohir.A07G127200' => 'ghi', 'Gohir.A07G132400' => 'ghi', 'Gohir.A08G000700' => 'ghi', 'Gohir.A11G327300' => 'ghi', 'Gohir.D01G211500' => 'ghi', 'Gohir.D03G123400' => 'ghi', 'Gohir.D03G123500' => 'ghi', 'Gohir.D04G121800' => 'ghi', 'Gohir.D07G131500' => 'ghi', 'Gohir.D07G136600' => 'ghi', 'Gohir.D08G011600' => 'ghi', 'Gohir.D11G346200' => 'ghi', 'Gorai.001G142800' => 'gra', 'Gorai.001G148700' => 'gra', 'Gorai.002G257300' => 'gra', 'Gorai.003G130000' => 'gra', 'Gorai.003G130100' => 'gra', 'Gorai.004G005300' => 'gra', 'Gorai.007G376500' => 'gra', 'Gorai.012G104700' => 'gra', 'GSVIVG01017946001' => 'vvi', 'GSVIVG01024928001' => 'vvi', 'GSVIVG01028227001' => 'vvi', 'GSVIVG01034151001' => 'vvi', 'HanXRQChr05g0135031' => 'han', 'HanXRQChr05g0135041' => 'han', 'HanXRQChr05g0140021' => 'han', 'HanXRQChr06g0178981' => 'han', 'HanXRQChr07g0188251' => 'han', 'HanXRQChr08g0235311' => 'han', 'HanXRQChr09g0271011' => 'han', 'HanXRQChr10g0293321' => 'han', 'HanXRQChr13g0388171' => 'han', 'Haze_00916' => 'cav', 'Haze_05063' => 'cav', 'Haze_20814' => 'cav', 'Haze_24128' => 'cav', 'Hma1.2p1_0745F.1_g212010' => 'hma', 'Hma1.2p1_0757F.1_g213260' => 'hma', 'Hma1.2p1_0936F.1_g238840' => 'hma', 'Hma1.2p1_1735F.1_g299890' => 'hma', 'Hma1.2p1_1861F.1_g305685' => 'hma', 'HPP92_003397' => 'vpl', 'HPP92_012597' => 'vpl', 'HPP92_015520' => 'vpl', 'HPP92_015539' => 'vpl', 'HPP92_020373' => 'vpl', 'Hund04938' => 'sun', 'Hund10677' => 'sun', 'Hund11033' => 'sun', 'Hund12155' => 'sun', 'Lalb_Chr01g0022551' => 'lal', 'Lalb_Chr03g0042341' => 'lal', 'Lalb_Chr07g0192931' => 'lal', 'Lalb_Chr12g0209551' => 'lal', 'Lalb_Chr19g0125251' => 'lal', 'Lalb_Chr19g0137891' => 'lal', 'Lalb_Chr21g0304641' => 'lal', 'Lalb_Chr21g0309881' => 'lal', 'Lj1A5T12' => 'lonja', 'Lj1C148G10' => 'lonja', 'Lj2A93T83' => 'lonja', 'Lj3A738G68' => 'lonja', 'Lj3C966T1' => 'lonja', 'Lj3g0018958' => 'lja', 'Lj3g0021831' => 'lja', 'Lj3g0025443' => 'lja', 'Lj4g0026809' => 'lja', 'Lj5g0012558' => 'lja', 'Lj5g0021586' => 'lja', 'Lsat_1_v5_gn_5_156840' => 'lsa', 'Lsat_1_v5_gn_8_73460' => 'lsa', 'Lsat_1_v5_gn_8_73481' => 'lsa', 'Lsat_1_v5_gn_9_31601' => 'lsa', 'Lsat_1_v5_gn_9_77320' => 'lsa', 'Manes.01G171300' => 'mes', 'Manes.01G171400' => 'mes', 'Manes.01G236100' => 'mes', 'Manes.02G130500' => 'mes', 'Manes.02G130600' => 'mes', 'Manes.03G180200' => 'mes', 'Manes.05G007000' => 'mes', 'Manes.08G084400' => 'mes', 'Manes.09G092600' => 'mes', 'Manes.15G027900' => 'mes', 'MBI04_g40948_MAGBIO' => 'mbi', 'MBI14_g12123_MAGBIO' => 'mbi', 'MBI18_g28915_MAGBIO' => 'mbi', 'MCO09G053' => 'mco', 'MCO11G782' => 'mco', 'MCO15G215' => 'mco', 'MD03G1088500' => 'mdo', 'MD03G1088600' => 'mdo', 'MD04G1130800' => 'mdo', 'MD09G1291700' => 'mdo', 'MD11G1097500' => 'mdo', 'MD11G1097600' => 'mdo', 'MD12G1143900' => 'mdo', 'MD13G1191400' => 'mdo', 'MD16G1191500' => 'mdo', 'Medtr1g085570' => 'mtr', 'Medtr1g104610' => 'mtr', 'Medtr2g097520' => 'mtr', 'Medtr4g021800' => 'mtr', 'Medtr4g021825' => 'mtr', 'Medtr4g064270' => 'mtr', 'Medtr4g064380' => 'mtr', 'Medtr7g062150' => 'mtr', 'MELO3C003138.2' => 'cme', 'MELO3C005187.2' => 'cme', 'MELO3C009252.2' => 'cme', 'MELO3C014481.2' => 'cme', 'MELO3C020616.2' => 'cme', 'MELO3C020617.2' => 'cme', 'MELO3C020618.2' => 'cme', 'Migut.G00328' => 'egut', 'Migut.J00320' => 'egut', 'Migut.L01000' => 'egut', 'Migut.L01953' => 'egut', 'MSTRG.10253' => 'ama', 'MSTRG.19077' => 'ama', 'MSTRG.26780' => 'ama', 'MSTRG.4023' => 'ama', 'MSTRG.5655' => 'ama', 'MSTRG.9992' => 'ama', 'Nitab4.5_0000043g0310' => 'nta', 'Nitab4.5_0000463g0080' => 'nta', 'Nitab4.5_0000705g0170' => 'nta', 'Nitab4.5_0001326g0060' => 'nta', 'Nitab4.5_0001628g0030' => 'nta', 'Nitab4.5_0002103g0110' => 'nta', 'Nitab4.5_0002946g0030' => 'nta', 'Nitab4.5_0004639g0030' => 'nta', 'Nn2g11149' => 'nnu', 'Nn2g13389' => 'nnu', 'Nn4g25326' => 'nnu', 'Nn4g26290' => 'nnu', 'Nn5g29865' => 'nnu', 'Oeu004163.1' => 'oeu', 'Oeu006901.1' => 'oeu', 'Oeu010096.1' => 'oeu', 'Oeu024340.1' => 'oeu', 'Oeu048369.1' => 'oeu', 'Os01g0973000' => 'osa', 'Os03g0273800' => 'osa', 'Os03g0701200' => 'osa', 'Os03g0834050' => 'osa', 'Os07g0634400' => 'osa', 'Peaxi162Scf00092g01414' => 'pax', 'Peaxi162Scf00165g00818' => 'pax', 'Peaxi162Scf00309g00516' => 'pax', 'Peaxi162Scf00774g00218' => 'pax', 'PGR004G1824' => 'pgr', 'PGR004G2606' => 'pgr', 'PGR031G2716' => 'pgr', 'PGR102G2460' => 'pgr', 'PGR142G2599' => 'pgr', 'PGSC0003DMG400000843' => 'stu', 'PGSC0003DMG400008829' => 'stu', 'PGSC0003DMG400030418' => 'stu', 'PGSC0003DMG400031834' => 'stu', 'PGSC0003DMG401028300' => 'stu', 'PGSC0003DMG402028300' => 'stu', 'Phvul.001G219300' => 'pvu', 'Phvul.007G056000' => 'pvu', 'Phvul.007G208000' => 'pvu', 'Phvul.008G119500' => 'pvu', 'Phvul.010G011200' => 'pvu', 'Phvul.010G014800' => 'pvu', 'Phvul.011G062900' => 'pvu', 'Phvul.L007043' => 'pvu', 'Potri.001G242300' => 'ptr', 'Potri.002G185300' => 'ptr', 'Potri.006G086900' => 'ptr', 'Potri.008G151700' => 'ptr', 'Potri.009G033500' => 'ptr', 'Potri.010G089300' => 'ptr', 'Potri.014G110800' => 'ptr', 'Pp3c27_8130' => 'ppa', 'Pp3c6_27410' => 'ppa', 'PRCOL_00001659' => 'pco', 'PRCOL_00001927' => 'pco', 'PRCOL_00003649' => 'pco', 'Prupe.1G011600' => 'ppe', 'Prupe.3G000800' => 'ppe', 'Prupe.3G001100' => 'ppe', 'Prupe.6G072700' => 'ppe', 'Prupe.6G072800' => 'ppe', 'Prupe.6G257300' => 'ppe', 'Prupe.8G033000' => 'ppe', 'Psat0s2633g0080' => 'psa', 'Psat0s3396g0080' => 'psa', 'Psat0s3396g0200' => 'psa', 'Psat3g139080' => 'psa', 'Psat5g285080' => 'psa', 'Psat6g157760' => 'psa', 'Psat6g208440' => 'psa', 'Psat7g215320' => 'psa', 'Psat7g215400' => 'psa', 'Psat7g235600' => 'psa', 'Psat7g235760' => 'psa', 'PSO063G4603' => 'pso', 'PSO210G0182' => 'pso', 'PSO210G0196' => 'pso', 'PSO339G0394' => 'pso', 'PSO339G4127' => 'pso', 'PSO513G0064' => 'pso', 'PSO761G0079' => 'pso', 'QL01p031003' => 'qlo', 'QL01p031078' => 'qlo', 'QL06p003004' => 'qlo', 'QL07p048731' => 'qlo', 'QL09p037427' => 'qlo', 'RcHm_v2.0_Chr3g0466361' => 'rch', 'RcHm_v2.0_Chr3g0485571' => 'rch', 'RcHm_v2.0_Chr4g0416551' => 'rch', 'RcHm_v2.0_Chr5g0065831' => 'rch', 'Rhsim01G0230500' => 'rsi', 'Rhsim05G0194000' => 'rsi', 'Rhsim08G0250400' => 'rsi', 'Sabra02G0131000' => 'sbr', 'Sabra06G0066300' => 'sbr', 'Sabra08G0115500' => 'sbr', 'Sabra09G0023900' => 'sbr', 'Sabra10G0054000' => 'sbr', 'Sabra14G0081500' => 'sbr', 'Sabra16G0147100' => 'sbr', 'SalBow2G2957' => 'sbo', 'SalBow4G3320' => 'sbo', 'SalBow8G1894' => 'sbo', 'Sc07g0007950' => 'sci', 'Sc12g0001360' => 'sci', 'Sc13g0004330' => 'sci', 'Sc20g0005010' => 'sci', 'Sed0000361' => 'sed', 'Sed0001706' => 'sed', 'Sed0002422' => 'sed', 'Sed0004029' => 'sed', 'Sed0004602' => 'sed', 'Sed0004943' => 'sed', 'Sed0008646' => 'sed', 'Sed0023313' => 'sed', 'Sed0024843' => 'sed', 'SEGI_00081' => 'sgi', 'SEGI_00947' => 'sgi', 'SEGI_04046' => 'sgi', 'SEGI_06880' => 'sgi', 'SEGI_09736' => 'sgi', 'SEGI_12741' => 'sgi', 'SEGI_14530' => 'sgi', 'SEGI_20705' => 'sgi', 'SEGI_26088' => 'sgi', 'SEGI_28323' => 'sgi', 'SEGI_33343' => 'sgi', 'SGA_v2.0_scaffold126G33775' => 'sas', 'SGA_v2.0_scaffold2G01337' => 'sas', 'SGA_v2.0_scaffold38G15006' => 'sas', 'SGA_v2.0_scaffold39G15264' => 'sas', 'SGA_v2.0_scaffold453G51880' => 'sas', 'SHI12696' => 'shi', 'SMO367G1096' => 'smo', 'Solyc01g068630.3' => 'sly', 'Solyc05g011880.3' => 'sly', 'Solyc06g076300.3' => 'sly', 'Solyc09g010940.4' => 'sly', 'Solyc09g075890.3' => 'sly', 'Sopen01g030560' => 'spe', 'Sopen05g006630' => 'spe', 'Sopen06g032720' => 'spe', 'Sopen09g005660' => 'spe', 'Sopen09g030690' => 'spe', 'Sp4g14540' => 'spa', 'Sp4g20030' => 'spa', 'Sp5g01320' => 'spa', 'Sp6g21170' => 'spa', 'Sp6g21180' => 'spa', 'Sp6g21190' => 'spa', 'Sp6g40220' => 'spa', 'TAR362G0122' => 'tar', 'TAR362G1338' => 'tar', 'TAR369G0590' => 'tar', 'TAR371G0824' => 'tar', 'TAR622G1429' => 'tar', 'TAR623G0734' => 'tar', 'TAR625G0441' => 'tar', 'TAR629G0976' => 'tar', 'TAR633G1195' => 'tar', 'TAR636G2660' => 'tar', 'THA.LOC104799440' => 'tha', 'THA.LOC104800966' => 'tha', 'THA.LOC104806559' => 'tha', 'THA.LOC104810765' => 'tha', 'THA.LOC104816266' => 'tha', 'THA.LOC104817419' => 'tha', 'THA.LOC104827021' => 'tha', 'Thecc.01G327400' => 'tca', 'Thecc.04G229200' => 'tca', 'Thecc.05G037400' => 'tca', 'Thecc.09G318600' => 'tca', 'Thecc.09G318700' => 'tca', 'Thhalv10006238m.g' => 'esa', 'Thhalv10014321m.g' => 'esa', 'Thhalv10014335m.g' => 'esa', 'Thhalv10015826m.g' => 'esa', 'Thhalv10017107m.g' => 'esa', 'Thhalv10017180m.g' => 'esa', 'Thhalv10029339m.g' => 'esa', 'TPR.G1699' => 'tpr', 'TPR.G23609' => 'tpr', 'TPR.G3081' => 'tpr', 'TPR.G40397' => 'tpr', 'TPR.G5522' => 'tpr', 'TPR.G5618' => 'tpr', 'TPR.G5626' => 'tpr', 'TWI09G1632' => 'twi', 'TWI23G1230' => 'twi', 'TWI53G1064' => 'twi', 'TWI59G0751' => 'twi', 'TWI74G0947' => 'twi', 'TWI77G0337' => 'twi', 'TWI79G1254' => 'twi', 'unitig_0.g2341' => 'ugi', 'unitig_26.g10006' => 'ugi', 'unitig_26.g10008' => 'ugi', 'unitig_26.g9192' => 'ugi', 'vmacro14547' => 'vma', 'vmacro15333' => 'vma', 'vmacro18743' => 'vma', 'vmacro20166' => 'vma', 'VMungo0331G0523' => 'vmu', 'VMungo0331G1202' => 'vmu', 'VMungo0720G1228' => 'vmu', 'VMungo0720G1514' => 'vmu', 'VMungo1080G0169' => 'vmu', 'VMungo1127G1475' => 'vmu', 'VMungo1383G1208' => 'vmu', 'VMungo1383G1698' => 'vmu', 'Zm00001eb012270' => 'zma', 'Zm00001eb054100' => 'zma', 'Zm00001eb063350' => 'zma', 'Zm00001eb328560' => 'zma', 'Zm00001eb342820' => 'zma', 'Zm00001eb362210' => 'zma', 'Zm00001eb397730' => 'zma', 'Zm00001eb399750' => 'zma' ) $gf_id = 'HOM05D000959' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000959' ) $data_identifier = 'HOM05D000959' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 5, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 5, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 10, 'mbi' => (int) 3, 'mco' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 2, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 3, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 11, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399750' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000959', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '622', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p07100' => 'bna', 'A03p11720' => 'bna', 'A05p08300' => 'bna', 'A05p13380' => 'bna', 'A09p54130' => 'bna', 'A10p16690' => 'bna', 'A10p16700' => 'bna', 'A10p33390' => 'bna', 'Aa31LG10G16020' => 'aar', 'Aa31LG1G11810' => 'aar', 'Aa31LG1G11830' => 'aar', 'Aa31LG1G22510' => 'aar', 'Aa31LG5G4890' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5793' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2310' => 'aag', 'Actinidia08499' => 'ach', 'Actinidia11262' => 'ach', 'Actinidia23926' => 'ach', 'Actinidia34420' => 'ach', 'Actinidia36970' => 'ach', 'Ah.02g111220' => 'amhyb', 'Ah.15g097750' => 'amhyb', 'AL4G27500' => 'aly', 'AL6G11470' => 'aly', 'AL8G35950' => 'aly', 'AL8G35960' => 'aly', 'AL8G35970' => 'aly', 'Aqoxy1G00912' => 'aox', 'Aqoxy2G02253' => 'aox', 'Aqoxy2G02411' => 'aox', 'Aqoxy5G00485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BZ66YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K8ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM4FUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6BF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HFV7XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25JBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0YNNV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MAKK6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P70IT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP2Z6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V61LZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YWP64R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3S9AI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7PGHH' => 'arhy', 'AT2G32150' => 'ath', 'AT3G62040' => 'ath', 'AT5G02230' => 'ath', 'AT5G59480' => 'ath', 'AT5G59490' => 'ath', 'ATR0332G060' => 'atr', 'ATR0559G190' => 'atr', 'ATR0693G294' => 'atr', 'Atru.chr3.3975' => 'acertr', 'Atru.chr3.3976' => 'acertr', 'Atru.chr3.3977' => 'acertr', 'Atru.chr4.2498' => 'acertr', 'Atru.chr5.838' => 'acertr', 'Atru.chr8.1990' => 'acertr', 'Atru.chr8.1991' => 'acertr', 'Atru.chr8.1992' => 'acertr', 'AUR62001759' => 'cqu', 'AUR62009545' => 'cqu', 'AUR62010474' => 'cqu', 'AUR62025820' => 'cqu', 'AUR62030422' => 'cqu', 'AUR62033605' => 'cqu', 'AUR62038615' => 'cqu', 'AUR62041347' => 'cqu', 'BcaB01g04574' => 'bca', 'BcaB02g09263' => 'bca', 'BcaB02g10453' => 'bca', 'BcaB05g22513' => 'bca', 'BcaB08g36253' => 'bca', 'BcaB08g36254' => 'bca', 'BcaC01g06519' => 'bca', 'BcaC02g11889' => 'bca', 'BcaC03g14010' => 'bca', 'BcaC03g18439' => 'bca', 'BcaC04g19765' => 'bca', 'BcaC09g48432' => 'bca', 'BcaNung07302' => 'bca', 'BolC2t06040H' => 'bol', 'BolC2t07346H' => 'bol', 'BolC3t13817H' => 'bol', 'BolC4t22625H' => 'bol', 'BolC4t23297H' => 'bol', 'BolC8t51278H' => 'bol', 'BolC9t58050H' => 'bol', 'BolC9t58051H' => 'bol', 'BolC9t60163H' => 'bol', 'BraA02t04712Z' => 'bra', 'BraA02t05791Z' => 'bra', 'BraA03t10483Z' => 'bra', 'BraA05t19795Z' => 'bra', 'BraA05t20276Z' => 'bra', 'BraA09t40827Z' => 'bra', 'BraA10t43750Z' => 'bra', 'BraA10t43751Z' => 'bra', 'BraA10t45370Z' => 'bra', 'C02p00400' => 'bna', 'C02p12460' => 'bna', 'C03p13680' => 'bna', 'C04p10270' => 'bna', 'C04p17500' => 'bna', 'C08p37010' => 'bna', 'C09p51880' => 'bna', 'C09p51890' => 'bna', 'C09p74300' => 'bna', 'CAN.G179.26' => 'can', 'CAN.G3384.1' => 'can', 'CAN.G394.68' => 'can', 'CAN.G907.13' => 'can', 'CANSAT11G0012' => 'cansat', 'CANSAT25G1586' => 'cansat', 'CANSAT35G0735' => 'cansat', 'CANSAT54G0556' => 'cansat', 'CANSAT64G0356' => 'cansat', 'CANSAT78G2042' => 'cansat', 'CARHR125920' => 'chi', 'CARHR131910' => 'chi', 'CARHR172390' => 'chi', 'CARHR211140' => 'chi', 'CARHR285850' => 'chi', 'CARHR285860' => 'chi', 'Carub.0004s1347' => 'cru', 'Carub.0004s1960' => 'cru', 'Carub.0005s2880' => 'cru', 'Carub.0006s0107' => 'cru', 'Carub.0008s2015' => 'cru', 'Carub.0008s2016' => 'cru', 'Carub.0008s2017' => 'cru', 'Ca_01315_v3' => 'car', 'Ca_05063_v3' => 'car', 'Ca_10231_v3' => 'car', 'Ca_10913_v3' => 'car', 'Ca_19156_v3' => 'car', 'Ca_23644_v3' => 'car', 'Ca_26735_v3' => 'car', 'Cc01_g13130' => 'ccan', 'Cc02_g21690' => 'ccan', 'Cc03_g03600' => 'ccan', 'Cc06_g02510' => 'ccan', 'CDE02G1265' => 'cde', 'CDE05G0415' => 'cde', 'CDE08G1082' => 'cde', 'Cfa005780' => 'cfa', 'Cfa011522' => 'cfa', 'Cfa011523' => 'cfa', 'Cfa015627' => 'cfa', 'Cfa017359' => 'cfa', 'Ciclev10005687m.g' => 'ccl', 'Ciclev10012173m.g' => 'ccl', 'Ciclev10021621m.g' => 'ccl', 'Ciclev10028968m.g' => 'ccl', 'Ciclev10029907m.g' => 'ccl', 'CiPaw.01G164800' => 'cil', 'CiPaw.07G083700' => 'cil', 'CiPaw.07G127000' => 'cil', 'CiPaw.07G136900' => 'cil', 'CiPaw.08G081700' => 'cil', 'CiPaw.09G194600' => 'cil', 'CiPaw.10G146500' => 'cil', 'CiPaw.13G091500' => 'cil', 'CiPaw.13G091600' => 'cil', 'ClCG00G003390' => 'cla', 'ClCG01G007220' => 'cla', 'ClCG03G001370' => 'cla', 'ClCG04G008100' => 'cla', 'ClCG06G006110' => 'cla', 'ClCG06G006130' => 'cla', 'ClCG10G021210' => 'cla', 'COL.COLO4_07648' => 'col', 'COL.COLO4_07650' => 'col', 'COL.COLO4_07651' => 'col', 'COL.COLO4_14780' => 'col', 'COL.COLO4_18546' => 'col', 'COL.COLO4_18547' => 'col', 'COL.COLO4_23103' => 'col', 'COL.COLO4_30419' => 'col', 'COL.COLO4_34232' => 'col', 'Cpa.g.sc169.20' => 'cpa', 'Cpa.g.sc57.45' => 'cpa', 'Cpa.g.sc58.124' => 'cpa', 'Cpa.g.sc58.125' => 'cpa', 'Cpa.g.sc81.118' => 'cpa', 'Cpa.g.sc81.119' => 'cpa', 'Cre12.g524700' => 'cre', 'CsaV3_1G034430' => 'csa', 'CsaV3_1G034440' => 'csa', 'CsaV3_1G034450' => 'csa', 'CsaV3_3G034830' => 'csa', 'CsaV3_4G025090' => 'csa', 'CsaV3_5G018660' => 'csa', 'CsaV3_6G038160' => 'csa', 'CSS0003447' => 'camsi', 'CSS0017840' => 'camsi', 'CSS0019260' => 'camsi', 'CSS0040375' => 'camsi', 'CSS0042533' => 'camsi', 'DCAR_005960' => 'dca', 'DCAR_012104' => 'dca', 'DCAR_012105' => 'dca', 'DCAR_012293' => 'dca', 'DCAR_015632' => 'dca', 'DCAR_024602' => 'dca', 'DCAR_028752' => 'dca', 'Dinv06261' => 'din', 'Dinv13982' => 'din', 'Dinv17029' => 'din', 'Dinv18463' => 'din', 'Dinv33181' => 'din', 'Dinv35585' => 'din', 'Dinv37161' => 'din', 'Dinv42977' => 'din', 'Dinv43122' => 'din', 'Dinv44517' => 'din', 'Duzib093G0256' => 'dzi', 'Duzib106G1254' => 'dzi', 'Duzib128G1789' => 'dzi', 'Duzib133G0633' => 'dzi', 'Duzib138G0510' => 'dzi', 'Duzib150G1084' => 'dzi', 'Duzib168G0488' => 'dzi', 'Duzib168G1523' => 'dzi', 'Duzib170G0133' => 'dzi', 'ECA234G1433' => 'eca', 'ECA236G1432' => 'eca', 'ECA236G2256' => 'eca', 'ECA236G2365' => 'eca', 'ECA236G4830' => 'eca', 'ECA248G1505' => 'eca', 'EL10Ac3g06431' => 'bvu', 'EL10Ac5g12577' => 'bvu', 'EL10Ac6g13533' => 'bvu', 'EL10Ac7g16045' => 'bvu', 'Eucgr.A01281' => 'egr', 'Eucgr.B02326' => 'egr', 'Eucgr.H03532' => 'egr', 'Eucgr.K00553' => 'egr', 'Eucgr.K03116' => 'egr', 'FAN02G3963' => 'fan', 'FAN05G0438' => 'fan', 'FAN09G2434' => 'fan', 'FAN12G3984' => 'fan', 'FAN14G0798' => 'fan', 'FAN17G0652' => 'fan', 'FAN19G1988' => 'fan', 'FAN22G0632' => 'fan', 'FAN23G0387' => 'fan', 'FAN26G1323' => 'fan', 'FAN28G0666' => 'fan', 'FvH4_1g26080' => 'fve', 'FvH4_3g36780' => 'fve', 'FvH4_4g15270' => 'fve', 'FvH4_6g13490' => 'fve', 'Glyma.01G098700' => 'gma', 'Glyma.03G065900' => 'gma', 'Glyma.03G073754' => 'gma', 'Glyma.03G073758' => 'gma', 'Glyma.03G083200' => 'gma', 'Glyma.03G225500' => 'gma', 'Glyma.05G037766' => 'gma', 'Glyma.07G133500' => 'gma', 'Glyma.10G139400' => 'gma', 'Glyma.10G248900' => 'gma', 'Glyma.11G137800' => 'gma', 'Glyma.12G061300' => 'gma', 'Glyma.13G337900' => 'gma', 'Glyma.15G036600' => 'gma', 'Glyma.18G182800' => 'gma', 'Glyma.19G222500' => 'gma', 'Glyma.20G144800' => 'gma', 'Gohir.A01G222000' => 'ghi', 'Gohir.A03G044000' => 'ghi', 'Gohir.A03G044100' => 'ghi', 'Gohir.A04G083100' => 'ghi', 'Gohir.A07G127200' => 'ghi', 'Gohir.A07G132400' => 'ghi', 'Gohir.A08G000700' => 'ghi', 'Gohir.A11G327300' => 'ghi', 'Gohir.D01G211500' => 'ghi', 'Gohir.D03G123400' => 'ghi', 'Gohir.D03G123500' => 'ghi', 'Gohir.D04G121800' => 'ghi', 'Gohir.D07G131500' => 'ghi', 'Gohir.D07G136600' => 'ghi', 'Gohir.D08G011600' => 'ghi', 'Gohir.D11G346200' => 'ghi', 'Gorai.001G142800' => 'gra', 'Gorai.001G148700' => 'gra', 'Gorai.002G257300' => 'gra', 'Gorai.003G130000' => 'gra', 'Gorai.003G130100' => 'gra', 'Gorai.004G005300' => 'gra', 'Gorai.007G376500' => 'gra', 'Gorai.012G104700' => 'gra', 'GSVIVG01017946001' => 'vvi', 'GSVIVG01024928001' => 'vvi', 'GSVIVG01028227001' => 'vvi', 'GSVIVG01034151001' => 'vvi', 'HanXRQChr05g0135031' => 'han', 'HanXRQChr05g0135041' => 'han', 'HanXRQChr05g0140021' => 'han', 'HanXRQChr06g0178981' => 'han', 'HanXRQChr07g0188251' => 'han', 'HanXRQChr08g0235311' => 'han', 'HanXRQChr09g0271011' => 'han', 'HanXRQChr10g0293321' => 'han', 'HanXRQChr13g0388171' => 'han', 'Haze_00916' => 'cav', 'Haze_05063' => 'cav', 'Haze_20814' => 'cav', 'Haze_24128' => 'cav', 'Hma1.2p1_0745F.1_g212010' => 'hma', 'Hma1.2p1_0757F.1_g213260' => 'hma', 'Hma1.2p1_0936F.1_g238840' => 'hma', 'Hma1.2p1_1735F.1_g299890' => 'hma', 'Hma1.2p1_1861F.1_g305685' => 'hma', 'HPP92_003397' => 'vpl', 'HPP92_012597' => 'vpl', 'HPP92_015520' => 'vpl', 'HPP92_015539' => 'vpl', 'HPP92_020373' => 'vpl', 'Hund04938' => 'sun', 'Hund10677' => 'sun', 'Hund11033' => 'sun', 'Hund12155' => 'sun', 'Lalb_Chr01g0022551' => 'lal', 'Lalb_Chr03g0042341' => 'lal', 'Lalb_Chr07g0192931' => 'lal', 'Lalb_Chr12g0209551' => 'lal', 'Lalb_Chr19g0125251' => 'lal', 'Lalb_Chr19g0137891' => 'lal', 'Lalb_Chr21g0304641' => 'lal', 'Lalb_Chr21g0309881' => 'lal', 'Lj1A5T12' => 'lonja', 'Lj1C148G10' => 'lonja', 'Lj2A93T83' => 'lonja', 'Lj3A738G68' => 'lonja', 'Lj3C966T1' => 'lonja', 'Lj3g0018958' => 'lja', 'Lj3g0021831' => 'lja', 'Lj3g0025443' => 'lja', 'Lj4g0026809' => 'lja', 'Lj5g0012558' => 'lja', 'Lj5g0021586' => 'lja', 'Lsat_1_v5_gn_5_156840' => 'lsa', 'Lsat_1_v5_gn_8_73460' => 'lsa', 'Lsat_1_v5_gn_8_73481' => 'lsa', 'Lsat_1_v5_gn_9_31601' => 'lsa', 'Lsat_1_v5_gn_9_77320' => 'lsa', 'Manes.01G171300' => 'mes', 'Manes.01G171400' => 'mes', 'Manes.01G236100' => 'mes', 'Manes.02G130500' => 'mes', 'Manes.02G130600' => 'mes', 'Manes.03G180200' => 'mes', 'Manes.05G007000' => 'mes', 'Manes.08G084400' => 'mes', 'Manes.09G092600' => 'mes', 'Manes.15G027900' => 'mes', 'MBI04_g40948_MAGBIO' => 'mbi', 'MBI14_g12123_MAGBIO' => 'mbi', 'MBI18_g28915_MAGBIO' => 'mbi', 'MCO09G053' => 'mco', 'MCO11G782' => 'mco', 'MCO15G215' => 'mco', 'MD03G1088500' => 'mdo', 'MD03G1088600' => 'mdo', 'MD04G1130800' => 'mdo', 'MD09G1291700' => 'mdo', 'MD11G1097500' => 'mdo', 'MD11G1097600' => 'mdo', 'MD12G1143900' => 'mdo', 'MD13G1191400' => 'mdo', 'MD16G1191500' => 'mdo', 'Medtr1g085570' => 'mtr', 'Medtr1g104610' => 'mtr', 'Medtr2g097520' => 'mtr', 'Medtr4g021800' => 'mtr', 'Medtr4g021825' => 'mtr', 'Medtr4g064270' => 'mtr', 'Medtr4g064380' => 'mtr', 'Medtr7g062150' => 'mtr', 'MELO3C003138.2' => 'cme', 'MELO3C005187.2' => 'cme', 'MELO3C009252.2' => 'cme', 'MELO3C014481.2' => 'cme', 'MELO3C020616.2' => 'cme', 'MELO3C020617.2' => 'cme', 'MELO3C020618.2' => 'cme', 'Migut.G00328' => 'egut', 'Migut.J00320' => 'egut', 'Migut.L01000' => 'egut', 'Migut.L01953' => 'egut', 'MSTRG.10253' => 'ama', 'MSTRG.19077' => 'ama', 'MSTRG.26780' => 'ama', 'MSTRG.4023' => 'ama', 'MSTRG.5655' => 'ama', 'MSTRG.9992' => 'ama', 'Nitab4.5_0000043g0310' => 'nta', 'Nitab4.5_0000463g0080' => 'nta', 'Nitab4.5_0000705g0170' => 'nta', 'Nitab4.5_0001326g0060' => 'nta', 'Nitab4.5_0001628g0030' => 'nta', 'Nitab4.5_0002103g0110' => 'nta', 'Nitab4.5_0002946g0030' => 'nta', 'Nitab4.5_0004639g0030' => 'nta', 'Nn2g11149' => 'nnu', 'Nn2g13389' => 'nnu', 'Nn4g25326' => 'nnu', 'Nn4g26290' => 'nnu', 'Nn5g29865' => 'nnu', 'Oeu004163.1' => 'oeu', 'Oeu006901.1' => 'oeu', 'Oeu010096.1' => 'oeu', 'Oeu024340.1' => 'oeu', 'Oeu048369.1' => 'oeu', 'Os01g0973000' => 'osa', 'Os03g0273800' => 'osa', 'Os03g0701200' => 'osa', 'Os03g0834050' => 'osa', 'Os07g0634400' => 'osa', 'Peaxi162Scf00092g01414' => 'pax', 'Peaxi162Scf00165g00818' => 'pax', 'Peaxi162Scf00309g00516' => 'pax', 'Peaxi162Scf00774g00218' => 'pax', 'PGR004G1824' => 'pgr', 'PGR004G2606' => 'pgr', 'PGR031G2716' => 'pgr', 'PGR102G2460' => 'pgr', 'PGR142G2599' => 'pgr', 'PGSC0003DMG400000843' => 'stu', 'PGSC0003DMG400008829' => 'stu', 'PGSC0003DMG400030418' => 'stu', 'PGSC0003DMG400031834' => 'stu', 'PGSC0003DMG401028300' => 'stu', 'PGSC0003DMG402028300' => 'stu', 'Phvul.001G219300' => 'pvu', 'Phvul.007G056000' => 'pvu', 'Phvul.007G208000' => 'pvu', 'Phvul.008G119500' => 'pvu', 'Phvul.010G011200' => 'pvu', 'Phvul.010G014800' => 'pvu', 'Phvul.011G062900' => 'pvu', 'Phvul.L007043' => 'pvu', 'Potri.001G242300' => 'ptr', 'Potri.002G185300' => 'ptr', 'Potri.006G086900' => 'ptr', 'Potri.008G151700' => 'ptr', 'Potri.009G033500' => 'ptr', 'Potri.010G089300' => 'ptr', 'Potri.014G110800' => 'ptr', 'Pp3c27_8130' => 'ppa', 'Pp3c6_27410' => 'ppa', 'PRCOL_00001659' => 'pco', 'PRCOL_00001927' => 'pco', 'PRCOL_00003649' => 'pco', 'Prupe.1G011600' => 'ppe', 'Prupe.3G000800' => 'ppe', 'Prupe.3G001100' => 'ppe', 'Prupe.6G072700' => 'ppe', 'Prupe.6G072800' => 'ppe', 'Prupe.6G257300' => 'ppe', 'Prupe.8G033000' => 'ppe', 'Psat0s2633g0080' => 'psa', 'Psat0s3396g0080' => 'psa', 'Psat0s3396g0200' => 'psa', 'Psat3g139080' => 'psa', 'Psat5g285080' => 'psa', 'Psat6g157760' => 'psa', 'Psat6g208440' => 'psa', 'Psat7g215320' => 'psa', 'Psat7g215400' => 'psa', 'Psat7g235600' => 'psa', 'Psat7g235760' => 'psa', 'PSO063G4603' => 'pso', 'PSO210G0182' => 'pso', 'PSO210G0196' => 'pso', 'PSO339G0394' => 'pso', 'PSO339G4127' => 'pso', 'PSO513G0064' => 'pso', 'PSO761G0079' => 'pso', 'QL01p031003' => 'qlo', 'QL01p031078' => 'qlo', 'QL06p003004' => 'qlo', 'QL07p048731' => 'qlo', 'QL09p037427' => 'qlo', 'RcHm_v2.0_Chr3g0466361' => 'rch', 'RcHm_v2.0_Chr3g0485571' => 'rch', 'RcHm_v2.0_Chr4g0416551' => 'rch', 'RcHm_v2.0_Chr5g0065831' => 'rch', 'Rhsim01G0230500' => 'rsi', 'Rhsim05G0194000' => 'rsi', 'Rhsim08G0250400' => 'rsi', 'Sabra02G0131000' => 'sbr', 'Sabra06G0066300' => 'sbr', 'Sabra08G0115500' => 'sbr', 'Sabra09G0023900' => 'sbr', 'Sabra10G0054000' => 'sbr', 'Sabra14G0081500' => 'sbr', 'Sabra16G0147100' => 'sbr', 'SalBow2G2957' => 'sbo', 'SalBow4G3320' => 'sbo', 'SalBow8G1894' => 'sbo', 'Sc07g0007950' => 'sci', 'Sc12g0001360' => 'sci', 'Sc13g0004330' => 'sci', 'Sc20g0005010' => 'sci', 'Sed0000361' => 'sed', 'Sed0001706' => 'sed', 'Sed0002422' => 'sed', 'Sed0004029' => 'sed', 'Sed0004602' => 'sed', 'Sed0004943' => 'sed', 'Sed0008646' => 'sed', 'Sed0023313' => 'sed', 'Sed0024843' => 'sed', 'SEGI_00081' => 'sgi', 'SEGI_00947' => 'sgi', 'SEGI_04046' => 'sgi', 'SEGI_06880' => 'sgi', 'SEGI_09736' => 'sgi', 'SEGI_12741' => 'sgi', 'SEGI_14530' => 'sgi', 'SEGI_20705' => 'sgi', 'SEGI_26088' => 'sgi', 'SEGI_28323' => 'sgi', 'SEGI_33343' => 'sgi', 'SGA_v2.0_scaffold126G33775' => 'sas', 'SGA_v2.0_scaffold2G01337' => 'sas', 'SGA_v2.0_scaffold38G15006' => 'sas', 'SGA_v2.0_scaffold39G15264' => 'sas', 'SGA_v2.0_scaffold453G51880' => 'sas', 'SHI12696' => 'shi', 'SMO367G1096' => 'smo', 'Solyc01g068630.3' => 'sly', 'Solyc05g011880.3' => 'sly', 'Solyc06g076300.3' => 'sly', 'Solyc09g010940.4' => 'sly', 'Solyc09g075890.3' => 'sly', 'Sopen01g030560' => 'spe', 'Sopen05g006630' => 'spe', 'Sopen06g032720' => 'spe', 'Sopen09g005660' => 'spe', 'Sopen09g030690' => 'spe', 'Sp4g14540' => 'spa', 'Sp4g20030' => 'spa', 'Sp5g01320' => 'spa', 'Sp6g21170' => 'spa', 'Sp6g21180' => 'spa', 'Sp6g21190' => 'spa', 'Sp6g40220' => 'spa', 'TAR362G0122' => 'tar', 'TAR362G1338' => 'tar', 'TAR369G0590' => 'tar', 'TAR371G0824' => 'tar', 'TAR622G1429' => 'tar', 'TAR623G0734' => 'tar', 'TAR625G0441' => 'tar', 'TAR629G0976' => 'tar', 'TAR633G1195' => 'tar', 'TAR636G2660' => 'tar', 'THA.LOC104799440' => 'tha', 'THA.LOC104800966' => 'tha', 'THA.LOC104806559' => 'tha', 'THA.LOC104810765' => 'tha', 'THA.LOC104816266' => 'tha', 'THA.LOC104817419' => 'tha', 'THA.LOC104827021' => 'tha', 'Thecc.01G327400' => 'tca', 'Thecc.04G229200' => 'tca', 'Thecc.05G037400' => 'tca', 'Thecc.09G318600' => 'tca', 'Thecc.09G318700' => 'tca', 'Thhalv10006238m.g' => 'esa', 'Thhalv10014321m.g' => 'esa', 'Thhalv10014335m.g' => 'esa', 'Thhalv10015826m.g' => 'esa', 'Thhalv10017107m.g' => 'esa', 'Thhalv10017180m.g' => 'esa', 'Thhalv10029339m.g' => 'esa', 'TPR.G1699' => 'tpr', 'TPR.G23609' => 'tpr', 'TPR.G3081' => 'tpr', 'TPR.G40397' => 'tpr', 'TPR.G5522' => 'tpr', 'TPR.G5618' => 'tpr', 'TPR.G5626' => 'tpr', 'TWI09G1632' => 'twi', 'TWI23G1230' => 'twi', 'TWI53G1064' => 'twi', 'TWI59G0751' => 'twi', 'TWI74G0947' => 'twi', 'TWI77G0337' => 'twi', 'TWI79G1254' => 'twi', 'unitig_0.g2341' => 'ugi', 'unitig_26.g10006' => 'ugi', 'unitig_26.g10008' => 'ugi', 'unitig_26.g9192' => 'ugi', 'vmacro14547' => 'vma', 'vmacro15333' => 'vma', 'vmacro18743' => 'vma', 'vmacro20166' => 'vma', 'VMungo0331G0523' => 'vmu', 'VMungo0331G1202' => 'vmu', 'VMungo0720G1228' => 'vmu', 'VMungo0720G1514' => 'vmu', 'VMungo1080G0169' => 'vmu', 'VMungo1127G1475' => 'vmu', 'VMungo1383G1208' => 'vmu', 'VMungo1383G1698' => 'vmu', 'Zm00001eb012270' => 'zma', 'Zm00001eb054100' => 'zma', 'Zm00001eb063350' => 'zma', 'Zm00001eb328560' => 'zma', 'Zm00001eb342820' => 'zma', 'Zm00001eb362210' => 'zma', 'Zm00001eb397730' => 'zma', 'Zm00001eb399750' => 'zma' ), 'gf_id' => 'HOM05D000959', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000959' ), 'data_identifier' => 'HOM05D000959', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000959', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '622', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p07100' => 'bna', 'A03p11720' => 'bna', 'A05p08300' => 'bna', 'A05p13380' => 'bna', 'A09p54130' => 'bna', 'A10p16690' => 'bna', 'A10p16700' => 'bna', 'A10p33390' => 'bna', 'Aa31LG10G16020' => 'aar', 'Aa31LG1G11810' => 'aar', 'Aa31LG1G11830' => 'aar', 'Aa31LG1G22510' => 'aar', 'Aa31LG5G4890' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5793' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2310' => 'aag', 'Actinidia08499' => 'ach', 'Actinidia11262' => 'ach', 'Actinidia23926' => 'ach', 'Actinidia34420' => 'ach', 'Actinidia36970' => 'ach', 'Ah.02g111220' => 'amhyb', 'Ah.15g097750' => 'amhyb', 'AL4G27500' => 'aly', 'AL6G11470' => 'aly', 'AL8G35950' => 'aly', 'AL8G35960' => 'aly', 'AL8G35970' => 'aly', 'Aqoxy1G00912' => 'aox', 'Aqoxy2G02253' => 'aox', 'Aqoxy2G02411' => 'aox', 'Aqoxy5G00485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BZ66YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K8ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM4FUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6BF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HFV7XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25JBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0YNNV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MAKK6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P70IT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP2Z6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V61LZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YWP64R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3S9AI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7PGHH' => 'arhy', 'AT2G32150' => 'ath', 'AT3G62040' => 'ath', 'AT5G02230' => 'ath', 'AT5G59480' => 'ath', 'AT5G59490' => 'ath', 'ATR0332G060' => 'atr', 'ATR0559G190' => 'atr', 'ATR0693G294' => 'atr', 'Atru.chr3.3975' => 'acertr', 'Atru.chr3.3976' => 'acertr', 'Atru.chr3.3977' => 'acertr', 'Atru.chr4.2498' => 'acertr', 'Atru.chr5.838' => 'acertr', 'Atru.chr8.1990' => 'acertr', 'Atru.chr8.1991' => 'acertr', 'Atru.chr8.1992' => 'acertr', 'AUR62001759' => 'cqu', 'AUR62009545' => 'cqu', 'AUR62010474' => 'cqu', 'AUR62025820' => 'cqu', 'AUR62030422' => 'cqu', 'AUR62033605' => 'cqu', 'AUR62038615' => 'cqu', 'AUR62041347' => 'cqu', 'BcaB01g04574' => 'bca', 'BcaB02g09263' => 'bca', 'BcaB02g10453' => 'bca', 'BcaB05g22513' => 'bca', 'BcaB08g36253' => 'bca', 'BcaB08g36254' => 'bca', 'BcaC01g06519' => 'bca', 'BcaC02g11889' => 'bca', 'BcaC03g14010' => 'bca', 'BcaC03g18439' => 'bca', 'BcaC04g19765' => 'bca', 'BcaC09g48432' => 'bca', 'BcaNung07302' => 'bca', 'BolC2t06040H' => 'bol', 'BolC2t07346H' => 'bol', 'BolC3t13817H' => 'bol', 'BolC4t22625H' => 'bol', 'BolC4t23297H' => 'bol', 'BolC8t51278H' => 'bol', 'BolC9t58050H' => 'bol', 'BolC9t58051H' => 'bol', 'BolC9t60163H' => 'bol', 'BraA02t04712Z' => 'bra', 'BraA02t05791Z' => 'bra', 'BraA03t10483Z' => 'bra', 'BraA05t19795Z' => 'bra', 'BraA05t20276Z' => 'bra', 'BraA09t40827Z' => 'bra', 'BraA10t43750Z' => 'bra', 'BraA10t43751Z' => 'bra', 'BraA10t45370Z' => 'bra', 'C02p00400' => 'bna', 'C02p12460' => 'bna', 'C03p13680' => 'bna', 'C04p10270' => 'bna', 'C04p17500' => 'bna', 'C08p37010' => 'bna', 'C09p51880' => 'bna', 'C09p51890' => 'bna', 'C09p74300' => 'bna', 'CAN.G179.26' => 'can', 'CAN.G3384.1' => 'can', 'CAN.G394.68' => 'can', 'CAN.G907.13' => 'can', 'CANSAT11G0012' => 'cansat', 'CANSAT25G1586' => 'cansat', 'CANSAT35G0735' => 'cansat', 'CANSAT54G0556' => 'cansat', 'CANSAT64G0356' => 'cansat', 'CANSAT78G2042' => 'cansat', 'CARHR125920' => 'chi', 'CARHR131910' => 'chi', 'CARHR172390' => 'chi', 'CARHR211140' => 'chi', 'CARHR285850' => 'chi', 'CARHR285860' => 'chi', 'Carub.0004s1347' => 'cru', 'Carub.0004s1960' => 'cru', 'Carub.0005s2880' => 'cru', 'Carub.0006s0107' => 'cru', 'Carub.0008s2015' => 'cru', 'Carub.0008s2016' => 'cru', 'Carub.0008s2017' => 'cru', 'Ca_01315_v3' => 'car', 'Ca_05063_v3' => 'car', 'Ca_10231_v3' => 'car', 'Ca_10913_v3' => 'car', 'Ca_19156_v3' => 'car', 'Ca_23644_v3' => 'car', 'Ca_26735_v3' => 'car', 'Cc01_g13130' => 'ccan', 'Cc02_g21690' => 'ccan', 'Cc03_g03600' => 'ccan', 'Cc06_g02510' => 'ccan', 'CDE02G1265' => 'cde', 'CDE05G0415' => 'cde', 'CDE08G1082' => 'cde', 'Cfa005780' => 'cfa', 'Cfa011522' => 'cfa', 'Cfa011523' => 'cfa', 'Cfa015627' => 'cfa', 'Cfa017359' => 'cfa', 'Ciclev10005687m.g' => 'ccl', 'Ciclev10012173m.g' => 'ccl', 'Ciclev10021621m.g' => 'ccl', 'Ciclev10028968m.g' => 'ccl', 'Ciclev10029907m.g' => 'ccl', 'CiPaw.01G164800' => 'cil', 'CiPaw.07G083700' => 'cil', 'CiPaw.07G127000' => 'cil', 'CiPaw.07G136900' => 'cil', 'CiPaw.08G081700' => 'cil', 'CiPaw.09G194600' => 'cil', 'CiPaw.10G146500' => 'cil', 'CiPaw.13G091500' => 'cil', 'CiPaw.13G091600' => 'cil', 'ClCG00G003390' => 'cla', 'ClCG01G007220' => 'cla', 'ClCG03G001370' => 'cla', 'ClCG04G008100' => 'cla', 'ClCG06G006110' => 'cla', 'ClCG06G006130' => 'cla', 'ClCG10G021210' => 'cla', 'COL.COLO4_07648' => 'col', 'COL.COLO4_07650' => 'col', 'COL.COLO4_07651' => 'col', 'COL.COLO4_14780' => 'col', 'COL.COLO4_18546' => 'col', 'COL.COLO4_18547' => 'col', 'COL.COLO4_23103' => 'col', 'COL.COLO4_30419' => 'col', 'COL.COLO4_34232' => 'col', 'Cpa.g.sc169.20' => 'cpa', 'Cpa.g.sc57.45' => 'cpa', 'Cpa.g.sc58.124' => 'cpa', 'Cpa.g.sc58.125' => 'cpa', 'Cpa.g.sc81.118' => 'cpa', 'Cpa.g.sc81.119' => 'cpa', 'Cre12.g524700' => 'cre', 'CsaV3_1G034430' => 'csa', 'CsaV3_1G034440' => 'csa', 'CsaV3_1G034450' => 'csa', 'CsaV3_3G034830' => 'csa', 'CsaV3_4G025090' => 'csa', 'CsaV3_5G018660' => 'csa', 'CsaV3_6G038160' => 'csa', 'CSS0003447' => 'camsi', 'CSS0017840' => 'camsi', 'CSS0019260' => 'camsi', 'CSS0040375' => 'camsi', 'CSS0042533' => 'camsi', 'DCAR_005960' => 'dca', 'DCAR_012104' => 'dca', 'DCAR_012105' => 'dca', 'DCAR_012293' => 'dca', 'DCAR_015632' => 'dca', 'DCAR_024602' => 'dca', 'DCAR_028752' => 'dca', 'Dinv06261' => 'din', 'Dinv13982' => 'din', 'Dinv17029' => 'din', 'Dinv18463' => 'din', 'Dinv33181' => 'din', 'Dinv35585' => 'din', 'Dinv37161' => 'din', 'Dinv42977' => 'din', 'Dinv43122' => 'din', 'Dinv44517' => 'din', 'Duzib093G0256' => 'dzi', 'Duzib106G1254' => 'dzi', 'Duzib128G1789' => 'dzi', 'Duzib133G0633' => 'dzi', 'Duzib138G0510' => 'dzi', 'Duzib150G1084' => 'dzi', 'Duzib168G0488' => 'dzi', 'Duzib168G1523' => 'dzi', 'Duzib170G0133' => 'dzi', 'ECA234G1433' => 'eca', 'ECA236G1432' => 'eca', 'ECA236G2256' => 'eca', 'ECA236G2365' => 'eca', 'ECA236G4830' => 'eca', 'ECA248G1505' => 'eca', 'EL10Ac3g06431' => 'bvu', 'EL10Ac5g12577' => 'bvu', 'EL10Ac6g13533' => 'bvu', 'EL10Ac7g16045' => 'bvu', 'Eucgr.A01281' => 'egr', 'Eucgr.B02326' => 'egr', 'Eucgr.H03532' => 'egr', 'Eucgr.K00553' => 'egr', 'Eucgr.K03116' => 'egr', 'FAN02G3963' => 'fan', 'FAN05G0438' => 'fan', 'FAN09G2434' => 'fan', 'FAN12G3984' => 'fan', 'FAN14G0798' => 'fan', 'FAN17G0652' => 'fan', 'FAN19G1988' => 'fan', 'FAN22G0632' => 'fan', 'FAN23G0387' => 'fan', 'FAN26G1323' => 'fan', 'FAN28G0666' => 'fan', 'FvH4_1g26080' => 'fve', 'FvH4_3g36780' => 'fve', 'FvH4_4g15270' => 'fve', 'FvH4_6g13490' => 'fve', 'Glyma.01G098700' => 'gma', 'Glyma.03G065900' => 'gma', 'Glyma.03G073754' => 'gma', 'Glyma.03G073758' => 'gma', 'Glyma.03G083200' => 'gma', 'Glyma.03G225500' => 'gma', 'Glyma.05G037766' => 'gma', 'Glyma.07G133500' => 'gma', 'Glyma.10G139400' => 'gma', 'Glyma.10G248900' => 'gma', 'Glyma.11G137800' => 'gma', 'Glyma.12G061300' => 'gma', 'Glyma.13G337900' => 'gma', 'Glyma.15G036600' => 'gma', 'Glyma.18G182800' => 'gma', 'Glyma.19G222500' => 'gma', 'Glyma.20G144800' => 'gma', 'Gohir.A01G222000' => 'ghi', 'Gohir.A03G044000' => 'ghi', 'Gohir.A03G044100' => 'ghi', 'Gohir.A04G083100' => 'ghi', 'Gohir.A07G127200' => 'ghi', 'Gohir.A07G132400' => 'ghi', 'Gohir.A08G000700' => 'ghi', 'Gohir.A11G327300' => 'ghi', 'Gohir.D01G211500' => 'ghi', 'Gohir.D03G123400' => 'ghi', 'Gohir.D03G123500' => 'ghi', 'Gohir.D04G121800' => 'ghi', 'Gohir.D07G131500' => 'ghi', 'Gohir.D07G136600' => 'ghi', 'Gohir.D08G011600' => 'ghi', 'Gohir.D11G346200' => 'ghi', 'Gorai.001G142800' => 'gra', 'Gorai.001G148700' => 'gra', 'Gorai.002G257300' => 'gra', 'Gorai.003G130000' => 'gra', 'Gorai.003G130100' => 'gra', 'Gorai.004G005300' => 'gra', 'Gorai.007G376500' => 'gra', 'Gorai.012G104700' => 'gra', 'GSVIVG01017946001' => 'vvi', 'GSVIVG01024928001' => 'vvi', 'GSVIVG01028227001' => 'vvi', 'GSVIVG01034151001' => 'vvi', 'HanXRQChr05g0135031' => 'han', 'HanXRQChr05g0135041' => 'han', 'HanXRQChr05g0140021' => 'han', 'HanXRQChr06g0178981' => 'han', 'HanXRQChr07g0188251' => 'han', 'HanXRQChr08g0235311' => 'han', 'HanXRQChr09g0271011' => 'han', 'HanXRQChr10g0293321' => 'han', 'HanXRQChr13g0388171' => 'han', 'Haze_00916' => 'cav', 'Haze_05063' => 'cav', 'Haze_20814' => 'cav', 'Haze_24128' => 'cav', 'Hma1.2p1_0745F.1_g212010' => 'hma', 'Hma1.2p1_0757F.1_g213260' => 'hma', 'Hma1.2p1_0936F.1_g238840' => 'hma', 'Hma1.2p1_1735F.1_g299890' => 'hma', 'Hma1.2p1_1861F.1_g305685' => 'hma', 'HPP92_003397' => 'vpl', 'HPP92_012597' => 'vpl', 'HPP92_015520' => 'vpl', 'HPP92_015539' => 'vpl', 'HPP92_020373' => 'vpl', 'Hund04938' => 'sun', 'Hund10677' => 'sun', 'Hund11033' => 'sun', 'Hund12155' => 'sun', 'Lalb_Chr01g0022551' => 'lal', 'Lalb_Chr03g0042341' => 'lal', 'Lalb_Chr07g0192931' => 'lal', 'Lalb_Chr12g0209551' => 'lal', 'Lalb_Chr19g0125251' => 'lal', 'Lalb_Chr19g0137891' => 'lal', 'Lalb_Chr21g0304641' => 'lal', 'Lalb_Chr21g0309881' => 'lal', 'Lj1A5T12' => 'lonja', 'Lj1C148G10' => 'lonja', 'Lj2A93T83' => 'lonja', 'Lj3A738G68' => 'lonja', 'Lj3C966T1' => 'lonja', 'Lj3g0018958' => 'lja', 'Lj3g0021831' => 'lja', 'Lj3g0025443' => 'lja', 'Lj4g0026809' => 'lja', 'Lj5g0012558' => 'lja', 'Lj5g0021586' => 'lja', 'Lsat_1_v5_gn_5_156840' => 'lsa', 'Lsat_1_v5_gn_8_73460' => 'lsa', 'Lsat_1_v5_gn_8_73481' => 'lsa', 'Lsat_1_v5_gn_9_31601' => 'lsa', 'Lsat_1_v5_gn_9_77320' => 'lsa', 'Manes.01G171300' => 'mes', 'Manes.01G171400' => 'mes', 'Manes.01G236100' => 'mes', 'Manes.02G130500' => 'mes', 'Manes.02G130600' => 'mes', 'Manes.03G180200' => 'mes', 'Manes.05G007000' => 'mes', 'Manes.08G084400' => 'mes', 'Manes.09G092600' => 'mes', 'Manes.15G027900' => 'mes', 'MBI04_g40948_MAGBIO' => 'mbi', 'MBI14_g12123_MAGBIO' => 'mbi', 'MBI18_g28915_MAGBIO' => 'mbi', 'MCO09G053' => 'mco', 'MCO11G782' => 'mco', 'MCO15G215' => 'mco', 'MD03G1088500' => 'mdo', 'MD03G1088600' => 'mdo', 'MD04G1130800' => 'mdo', 'MD09G1291700' => 'mdo', 'MD11G1097500' => 'mdo', 'MD11G1097600' => 'mdo', 'MD12G1143900' => 'mdo', 'MD13G1191400' => 'mdo', 'MD16G1191500' => 'mdo', 'Medtr1g085570' => 'mtr', 'Medtr1g104610' => 'mtr', 'Medtr2g097520' => 'mtr', 'Medtr4g021800' => 'mtr', 'Medtr4g021825' => 'mtr', 'Medtr4g064270' => 'mtr', 'Medtr4g064380' => 'mtr', 'Medtr7g062150' => 'mtr', 'MELO3C003138.2' => 'cme', 'MELO3C005187.2' => 'cme', 'MELO3C009252.2' => 'cme', 'MELO3C014481.2' => 'cme', 'MELO3C020616.2' => 'cme', 'MELO3C020617.2' => 'cme', 'MELO3C020618.2' => 'cme', 'Migut.G00328' => 'egut', 'Migut.J00320' => 'egut', 'Migut.L01000' => 'egut', 'Migut.L01953' => 'egut', 'MSTRG.10253' => 'ama', 'MSTRG.19077' => 'ama', 'MSTRG.26780' => 'ama', 'MSTRG.4023' => 'ama', 'MSTRG.5655' => 'ama', 'MSTRG.9992' => 'ama', 'Nitab4.5_0000043g0310' => 'nta', 'Nitab4.5_0000463g0080' => 'nta', 'Nitab4.5_0000705g0170' => 'nta', 'Nitab4.5_0001326g0060' => 'nta', 'Nitab4.5_0001628g0030' => 'nta', 'Nitab4.5_0002103g0110' => 'nta', 'Nitab4.5_0002946g0030' => 'nta', 'Nitab4.5_0004639g0030' => 'nta', 'Nn2g11149' => 'nnu', 'Nn2g13389' => 'nnu', 'Nn4g25326' => 'nnu', 'Nn4g26290' => 'nnu', 'Nn5g29865' => 'nnu', 'Oeu004163.1' => 'oeu', 'Oeu006901.1' => 'oeu', 'Oeu010096.1' => 'oeu', 'Oeu024340.1' => 'oeu', 'Oeu048369.1' => 'oeu', 'Os01g0973000' => 'osa', 'Os03g0273800' => 'osa', 'Os03g0701200' => 'osa', 'Os03g0834050' => 'osa', 'Os07g0634400' => 'osa', 'Peaxi162Scf00092g01414' => 'pax', 'Peaxi162Scf00165g00818' => 'pax', 'Peaxi162Scf00309g00516' => 'pax', 'Peaxi162Scf00774g00218' => 'pax', 'PGR004G1824' => 'pgr', 'PGR004G2606' => 'pgr', 'PGR031G2716' => 'pgr', 'PGR102G2460' => 'pgr', 'PGR142G2599' => 'pgr', 'PGSC0003DMG400000843' => 'stu', 'PGSC0003DMG400008829' => 'stu', 'PGSC0003DMG400030418' => 'stu', 'PGSC0003DMG400031834' => 'stu', 'PGSC0003DMG401028300' => 'stu', 'PGSC0003DMG402028300' => 'stu', 'Phvul.001G219300' => 'pvu', 'Phvul.007G056000' => 'pvu', 'Phvul.007G208000' => 'pvu', 'Phvul.008G119500' => 'pvu', 'Phvul.010G011200' => 'pvu', 'Phvul.010G014800' => 'pvu', 'Phvul.011G062900' => 'pvu', 'Phvul.L007043' => 'pvu', 'Potri.001G242300' => 'ptr', 'Potri.002G185300' => 'ptr', 'Potri.006G086900' => 'ptr', 'Potri.008G151700' => 'ptr', 'Potri.009G033500' => 'ptr', 'Potri.010G089300' => 'ptr', 'Potri.014G110800' => 'ptr', 'Pp3c27_8130' => 'ppa', 'Pp3c6_27410' => 'ppa', 'PRCOL_00001659' => 'pco', 'PRCOL_00001927' => 'pco', 'PRCOL_00003649' => 'pco', 'Prupe.1G011600' => 'ppe', 'Prupe.3G000800' => 'ppe', 'Prupe.3G001100' => 'ppe', 'Prupe.6G072700' => 'ppe', 'Prupe.6G072800' => 'ppe', 'Prupe.6G257300' => 'ppe', 'Prupe.8G033000' => 'ppe', 'Psat0s2633g0080' => 'psa', 'Psat0s3396g0080' => 'psa', 'Psat0s3396g0200' => 'psa', 'Psat3g139080' => 'psa', 'Psat5g285080' => 'psa', 'Psat6g157760' => 'psa', 'Psat6g208440' => 'psa', 'Psat7g215320' => 'psa', 'Psat7g215400' => 'psa', 'Psat7g235600' => 'psa', 'Psat7g235760' => 'psa', 'PSO063G4603' => 'pso', 'PSO210G0182' => 'pso', 'PSO210G0196' => 'pso', 'PSO339G0394' => 'pso', 'PSO339G4127' => 'pso', 'PSO513G0064' => 'pso', 'PSO761G0079' => 'pso', 'QL01p031003' => 'qlo', 'QL01p031078' => 'qlo', 'QL06p003004' => 'qlo', 'QL07p048731' => 'qlo', 'QL09p037427' => 'qlo', 'RcHm_v2.0_Chr3g0466361' => 'rch', 'RcHm_v2.0_Chr3g0485571' => 'rch', 'RcHm_v2.0_Chr4g0416551' => 'rch', 'RcHm_v2.0_Chr5g0065831' => 'rch', 'Rhsim01G0230500' => 'rsi', 'Rhsim05G0194000' => 'rsi', 'Rhsim08G0250400' => 'rsi', 'Sabra02G0131000' => 'sbr', 'Sabra06G0066300' => 'sbr', 'Sabra08G0115500' => 'sbr', 'Sabra09G0023900' => 'sbr', 'Sabra10G0054000' => 'sbr', 'Sabra14G0081500' => 'sbr', 'Sabra16G0147100' => 'sbr', 'SalBow2G2957' => 'sbo', 'SalBow4G3320' => 'sbo', 'SalBow8G1894' => 'sbo', 'Sc07g0007950' => 'sci', 'Sc12g0001360' => 'sci', 'Sc13g0004330' => 'sci', 'Sc20g0005010' => 'sci', 'Sed0000361' => 'sed', 'Sed0001706' => 'sed', 'Sed0002422' => 'sed', 'Sed0004029' => 'sed', 'Sed0004602' => 'sed', 'Sed0004943' => 'sed', 'Sed0008646' => 'sed', 'Sed0023313' => 'sed', 'Sed0024843' => 'sed', 'SEGI_00081' => 'sgi', 'SEGI_00947' => 'sgi', 'SEGI_04046' => 'sgi', 'SEGI_06880' => 'sgi', 'SEGI_09736' => 'sgi', 'SEGI_12741' => 'sgi', 'SEGI_14530' => 'sgi', 'SEGI_20705' => 'sgi', 'SEGI_26088' => 'sgi', 'SEGI_28323' => 'sgi', 'SEGI_33343' => 'sgi', 'SGA_v2.0_scaffold126G33775' => 'sas', 'SGA_v2.0_scaffold2G01337' => 'sas', 'SGA_v2.0_scaffold38G15006' => 'sas', 'SGA_v2.0_scaffold39G15264' => 'sas', 'SGA_v2.0_scaffold453G51880' => 'sas', 'SHI12696' => 'shi', 'SMO367G1096' => 'smo', 'Solyc01g068630.3' => 'sly', 'Solyc05g011880.3' => 'sly', 'Solyc06g076300.3' => 'sly', 'Solyc09g010940.4' => 'sly', 'Solyc09g075890.3' => 'sly', 'Sopen01g030560' => 'spe', 'Sopen05g006630' => 'spe', 'Sopen06g032720' => 'spe', 'Sopen09g005660' => 'spe', 'Sopen09g030690' => 'spe', 'Sp4g14540' => 'spa', 'Sp4g20030' => 'spa', 'Sp5g01320' => 'spa', 'Sp6g21170' => 'spa', 'Sp6g21180' => 'spa', 'Sp6g21190' => 'spa', 'Sp6g40220' => 'spa', 'TAR362G0122' => 'tar', 'TAR362G1338' => 'tar', 'TAR369G0590' => 'tar', 'TAR371G0824' => 'tar', 'TAR622G1429' => 'tar', 'TAR623G0734' => 'tar', 'TAR625G0441' => 'tar', 'TAR629G0976' => 'tar', 'TAR633G1195' => 'tar', 'TAR636G2660' => 'tar', 'THA.LOC104799440' => 'tha', 'THA.LOC104800966' => 'tha', 'THA.LOC104806559' => 'tha', 'THA.LOC104810765' => 'tha', 'THA.LOC104816266' => 'tha', 'THA.LOC104817419' => 'tha', 'THA.LOC104827021' => 'tha', 'Thecc.01G327400' => 'tca', 'Thecc.04G229200' => 'tca', 'Thecc.05G037400' => 'tca', 'Thecc.09G318600' => 'tca', 'Thecc.09G318700' => 'tca', 'Thhalv10006238m.g' => 'esa', 'Thhalv10014321m.g' => 'esa', 'Thhalv10014335m.g' => 'esa', 'Thhalv10015826m.g' => 'esa', 'Thhalv10017107m.g' => 'esa', 'Thhalv10017180m.g' => 'esa', 'Thhalv10029339m.g' => 'esa', 'TPR.G1699' => 'tpr', 'TPR.G23609' => 'tpr', 'TPR.G3081' => 'tpr', 'TPR.G40397' => 'tpr', 'TPR.G5522' => 'tpr', 'TPR.G5618' => 'tpr', 'TPR.G5626' => 'tpr', 'TWI09G1632' => 'twi', 'TWI23G1230' => 'twi', 'TWI53G1064' => 'twi', 'TWI59G0751' => 'twi', 'TWI74G0947' => 'twi', 'TWI77G0337' => 'twi', 'TWI79G1254' => 'twi', 'unitig_0.g2341' => 'ugi', 'unitig_26.g10006' => 'ugi', 'unitig_26.g10008' => 'ugi', 'unitig_26.g9192' => 'ugi', 'vmacro14547' => 'vma', 'vmacro15333' => 'vma', 'vmacro18743' => 'vma', 'vmacro20166' => 'vma', 'VMungo0331G0523' => 'vmu', 'VMungo0331G1202' => 'vmu', 'VMungo0720G1228' => 'vmu', 'VMungo0720G1514' => 'vmu', 'VMungo1080G0169' => 'vmu', 'VMungo1127G1475' => 'vmu', 'VMungo1383G1208' => 'vmu', 'VMungo1383G1698' => 'vmu', 'Zm00001eb012270' => 'zma', 'Zm00001eb054100' => 'zma', 'Zm00001eb063350' => 'zma', 'Zm00001eb328560' => 'zma', 'Zm00001eb342820' => 'zma', 'Zm00001eb362210' => 'zma', 'Zm00001eb397730' => 'zma', 'Zm00001eb399750' => 'zma' ) $gf_id = 'HOM05D000959' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000959' ) $data_identifier = 'HOM05D000959' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 5, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 5, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 10, 'mbi' => (int) 3, 'mco' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 2, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 3, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 11, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399750' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000959', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '622', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p07100' => 'bna', 'A03p11720' => 'bna', 'A05p08300' => 'bna', 'A05p13380' => 'bna', 'A09p54130' => 'bna', 'A10p16690' => 'bna', 'A10p16700' => 'bna', 'A10p33390' => 'bna', 'Aa31LG10G16020' => 'aar', 'Aa31LG1G11810' => 'aar', 'Aa31LG1G11830' => 'aar', 'Aa31LG1G22510' => 'aar', 'Aa31LG5G4890' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5793' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2310' => 'aag', 'Actinidia08499' => 'ach', 'Actinidia11262' => 'ach', 'Actinidia23926' => 'ach', 'Actinidia34420' => 'ach', 'Actinidia36970' => 'ach', 'Ah.02g111220' => 'amhyb', 'Ah.15g097750' => 'amhyb', 'AL4G27500' => 'aly', 'AL6G11470' => 'aly', 'AL8G35950' => 'aly', 'AL8G35960' => 'aly', 'AL8G35970' => 'aly', 'Aqoxy1G00912' => 'aox', 'Aqoxy2G02253' => 'aox', 'Aqoxy2G02411' => 'aox', 'Aqoxy5G00485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BZ66YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K8ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM4FUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6BF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HFV7XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25JBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0YNNV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MAKK6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P70IT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP2Z6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V61LZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YWP64R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3S9AI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7PGHH' => 'arhy', 'AT2G32150' => 'ath', 'AT3G62040' => 'ath', 'AT5G02230' => 'ath', 'AT5G59480' => 'ath', 'AT5G59490' => 'ath', 'ATR0332G060' => 'atr', 'ATR0559G190' => 'atr', 'ATR0693G294' => 'atr', 'Atru.chr3.3975' => 'acertr', 'Atru.chr3.3976' => 'acertr', 'Atru.chr3.3977' => 'acertr', 'Atru.chr4.2498' => 'acertr', 'Atru.chr5.838' => 'acertr', 'Atru.chr8.1990' => 'acertr', 'Atru.chr8.1991' => 'acertr', 'Atru.chr8.1992' => 'acertr', 'AUR62001759' => 'cqu', 'AUR62009545' => 'cqu', 'AUR62010474' => 'cqu', 'AUR62025820' => 'cqu', 'AUR62030422' => 'cqu', 'AUR62033605' => 'cqu', 'AUR62038615' => 'cqu', 'AUR62041347' => 'cqu', 'BcaB01g04574' => 'bca', 'BcaB02g09263' => 'bca', 'BcaB02g10453' => 'bca', 'BcaB05g22513' => 'bca', 'BcaB08g36253' => 'bca', 'BcaB08g36254' => 'bca', 'BcaC01g06519' => 'bca', 'BcaC02g11889' => 'bca', 'BcaC03g14010' => 'bca', 'BcaC03g18439' => 'bca', 'BcaC04g19765' => 'bca', 'BcaC09g48432' => 'bca', 'BcaNung07302' => 'bca', 'BolC2t06040H' => 'bol', 'BolC2t07346H' => 'bol', 'BolC3t13817H' => 'bol', 'BolC4t22625H' => 'bol', 'BolC4t23297H' => 'bol', 'BolC8t51278H' => 'bol', 'BolC9t58050H' => 'bol', 'BolC9t58051H' => 'bol', 'BolC9t60163H' => 'bol', 'BraA02t04712Z' => 'bra', 'BraA02t05791Z' => 'bra', 'BraA03t10483Z' => 'bra', 'BraA05t19795Z' => 'bra', 'BraA05t20276Z' => 'bra', 'BraA09t40827Z' => 'bra', 'BraA10t43750Z' => 'bra', 'BraA10t43751Z' => 'bra', 'BraA10t45370Z' => 'bra', 'C02p00400' => 'bna', 'C02p12460' => 'bna', 'C03p13680' => 'bna', 'C04p10270' => 'bna', 'C04p17500' => 'bna', 'C08p37010' => 'bna', 'C09p51880' => 'bna', 'C09p51890' => 'bna', 'C09p74300' => 'bna', 'CAN.G179.26' => 'can', 'CAN.G3384.1' => 'can', 'CAN.G394.68' => 'can', 'CAN.G907.13' => 'can', 'CANSAT11G0012' => 'cansat', 'CANSAT25G1586' => 'cansat', 'CANSAT35G0735' => 'cansat', 'CANSAT54G0556' => 'cansat', 'CANSAT64G0356' => 'cansat', 'CANSAT78G2042' => 'cansat', 'CARHR125920' => 'chi', 'CARHR131910' => 'chi', 'CARHR172390' => 'chi', 'CARHR211140' => 'chi', 'CARHR285850' => 'chi', 'CARHR285860' => 'chi', 'Carub.0004s1347' => 'cru', 'Carub.0004s1960' => 'cru', 'Carub.0005s2880' => 'cru', 'Carub.0006s0107' => 'cru', 'Carub.0008s2015' => 'cru', 'Carub.0008s2016' => 'cru', 'Carub.0008s2017' => 'cru', 'Ca_01315_v3' => 'car', 'Ca_05063_v3' => 'car', 'Ca_10231_v3' => 'car', 'Ca_10913_v3' => 'car', 'Ca_19156_v3' => 'car', 'Ca_23644_v3' => 'car', 'Ca_26735_v3' => 'car', 'Cc01_g13130' => 'ccan', 'Cc02_g21690' => 'ccan', 'Cc03_g03600' => 'ccan', 'Cc06_g02510' => 'ccan', 'CDE02G1265' => 'cde', 'CDE05G0415' => 'cde', 'CDE08G1082' => 'cde', 'Cfa005780' => 'cfa', 'Cfa011522' => 'cfa', 'Cfa011523' => 'cfa', 'Cfa015627' => 'cfa', 'Cfa017359' => 'cfa', 'Ciclev10005687m.g' => 'ccl', 'Ciclev10012173m.g' => 'ccl', 'Ciclev10021621m.g' => 'ccl', 'Ciclev10028968m.g' => 'ccl', 'Ciclev10029907m.g' => 'ccl', 'CiPaw.01G164800' => 'cil', 'CiPaw.07G083700' => 'cil', 'CiPaw.07G127000' => 'cil', 'CiPaw.07G136900' => 'cil', 'CiPaw.08G081700' => 'cil', 'CiPaw.09G194600' => 'cil', 'CiPaw.10G146500' => 'cil', 'CiPaw.13G091500' => 'cil', 'CiPaw.13G091600' => 'cil', 'ClCG00G003390' => 'cla', 'ClCG01G007220' => 'cla', 'ClCG03G001370' => 'cla', 'ClCG04G008100' => 'cla', 'ClCG06G006110' => 'cla', 'ClCG06G006130' => 'cla', 'ClCG10G021210' => 'cla', 'COL.COLO4_07648' => 'col', 'COL.COLO4_07650' => 'col', 'COL.COLO4_07651' => 'col', 'COL.COLO4_14780' => 'col', 'COL.COLO4_18546' => 'col', 'COL.COLO4_18547' => 'col', 'COL.COLO4_23103' => 'col', 'COL.COLO4_30419' => 'col', 'COL.COLO4_34232' => 'col', 'Cpa.g.sc169.20' => 'cpa', 'Cpa.g.sc57.45' => 'cpa', 'Cpa.g.sc58.124' => 'cpa', 'Cpa.g.sc58.125' => 'cpa', 'Cpa.g.sc81.118' => 'cpa', 'Cpa.g.sc81.119' => 'cpa', 'Cre12.g524700' => 'cre', 'CsaV3_1G034430' => 'csa', 'CsaV3_1G034440' => 'csa', 'CsaV3_1G034450' => 'csa', 'CsaV3_3G034830' => 'csa', 'CsaV3_4G025090' => 'csa', 'CsaV3_5G018660' => 'csa', 'CsaV3_6G038160' => 'csa', 'CSS0003447' => 'camsi', 'CSS0017840' => 'camsi', 'CSS0019260' => 'camsi', 'CSS0040375' => 'camsi', 'CSS0042533' => 'camsi', 'DCAR_005960' => 'dca', 'DCAR_012104' => 'dca', 'DCAR_012105' => 'dca', 'DCAR_012293' => 'dca', 'DCAR_015632' => 'dca', 'DCAR_024602' => 'dca', 'DCAR_028752' => 'dca', 'Dinv06261' => 'din', 'Dinv13982' => 'din', 'Dinv17029' => 'din', 'Dinv18463' => 'din', 'Dinv33181' => 'din', 'Dinv35585' => 'din', 'Dinv37161' => 'din', 'Dinv42977' => 'din', 'Dinv43122' => 'din', 'Dinv44517' => 'din', 'Duzib093G0256' => 'dzi', 'Duzib106G1254' => 'dzi', 'Duzib128G1789' => 'dzi', 'Duzib133G0633' => 'dzi', 'Duzib138G0510' => 'dzi', 'Duzib150G1084' => 'dzi', 'Duzib168G0488' => 'dzi', 'Duzib168G1523' => 'dzi', 'Duzib170G0133' => 'dzi', 'ECA234G1433' => 'eca', 'ECA236G1432' => 'eca', 'ECA236G2256' => 'eca', 'ECA236G2365' => 'eca', 'ECA236G4830' => 'eca', 'ECA248G1505' => 'eca', 'EL10Ac3g06431' => 'bvu', 'EL10Ac5g12577' => 'bvu', 'EL10Ac6g13533' => 'bvu', 'EL10Ac7g16045' => 'bvu', 'Eucgr.A01281' => 'egr', 'Eucgr.B02326' => 'egr', 'Eucgr.H03532' => 'egr', 'Eucgr.K00553' => 'egr', 'Eucgr.K03116' => 'egr', 'FAN02G3963' => 'fan', 'FAN05G0438' => 'fan', 'FAN09G2434' => 'fan', 'FAN12G3984' => 'fan', 'FAN14G0798' => 'fan', 'FAN17G0652' => 'fan', 'FAN19G1988' => 'fan', 'FAN22G0632' => 'fan', 'FAN23G0387' => 'fan', 'FAN26G1323' => 'fan', 'FAN28G0666' => 'fan', 'FvH4_1g26080' => 'fve', 'FvH4_3g36780' => 'fve', 'FvH4_4g15270' => 'fve', 'FvH4_6g13490' => 'fve', 'Glyma.01G098700' => 'gma', 'Glyma.03G065900' => 'gma', 'Glyma.03G073754' => 'gma', 'Glyma.03G073758' => 'gma', 'Glyma.03G083200' => 'gma', 'Glyma.03G225500' => 'gma', 'Glyma.05G037766' => 'gma', 'Glyma.07G133500' => 'gma', 'Glyma.10G139400' => 'gma', 'Glyma.10G248900' => 'gma', 'Glyma.11G137800' => 'gma', 'Glyma.12G061300' => 'gma', 'Glyma.13G337900' => 'gma', 'Glyma.15G036600' => 'gma', 'Glyma.18G182800' => 'gma', 'Glyma.19G222500' => 'gma', 'Glyma.20G144800' => 'gma', 'Gohir.A01G222000' => 'ghi', 'Gohir.A03G044000' => 'ghi', 'Gohir.A03G044100' => 'ghi', 'Gohir.A04G083100' => 'ghi', 'Gohir.A07G127200' => 'ghi', 'Gohir.A07G132400' => 'ghi', 'Gohir.A08G000700' => 'ghi', 'Gohir.A11G327300' => 'ghi', 'Gohir.D01G211500' => 'ghi', 'Gohir.D03G123400' => 'ghi', 'Gohir.D03G123500' => 'ghi', 'Gohir.D04G121800' => 'ghi', 'Gohir.D07G131500' => 'ghi', 'Gohir.D07G136600' => 'ghi', 'Gohir.D08G011600' => 'ghi', 'Gohir.D11G346200' => 'ghi', 'Gorai.001G142800' => 'gra', 'Gorai.001G148700' => 'gra', 'Gorai.002G257300' => 'gra', 'Gorai.003G130000' => 'gra', 'Gorai.003G130100' => 'gra', 'Gorai.004G005300' => 'gra', 'Gorai.007G376500' => 'gra', 'Gorai.012G104700' => 'gra', 'GSVIVG01017946001' => 'vvi', 'GSVIVG01024928001' => 'vvi', 'GSVIVG01028227001' => 'vvi', 'GSVIVG01034151001' => 'vvi', 'HanXRQChr05g0135031' => 'han', 'HanXRQChr05g0135041' => 'han', 'HanXRQChr05g0140021' => 'han', 'HanXRQChr06g0178981' => 'han', 'HanXRQChr07g0188251' => 'han', 'HanXRQChr08g0235311' => 'han', 'HanXRQChr09g0271011' => 'han', 'HanXRQChr10g0293321' => 'han', 'HanXRQChr13g0388171' => 'han', 'Haze_00916' => 'cav', 'Haze_05063' => 'cav', 'Haze_20814' => 'cav', 'Haze_24128' => 'cav', 'Hma1.2p1_0745F.1_g212010' => 'hma', 'Hma1.2p1_0757F.1_g213260' => 'hma', 'Hma1.2p1_0936F.1_g238840' => 'hma', 'Hma1.2p1_1735F.1_g299890' => 'hma', 'Hma1.2p1_1861F.1_g305685' => 'hma', 'HPP92_003397' => 'vpl', 'HPP92_012597' => 'vpl', 'HPP92_015520' => 'vpl', 'HPP92_015539' => 'vpl', 'HPP92_020373' => 'vpl', 'Hund04938' => 'sun', 'Hund10677' => 'sun', 'Hund11033' => 'sun', 'Hund12155' => 'sun', 'Lalb_Chr01g0022551' => 'lal', 'Lalb_Chr03g0042341' => 'lal', 'Lalb_Chr07g0192931' => 'lal', 'Lalb_Chr12g0209551' => 'lal', 'Lalb_Chr19g0125251' => 'lal', 'Lalb_Chr19g0137891' => 'lal', 'Lalb_Chr21g0304641' => 'lal', 'Lalb_Chr21g0309881' => 'lal', 'Lj1A5T12' => 'lonja', 'Lj1C148G10' => 'lonja', 'Lj2A93T83' => 'lonja', 'Lj3A738G68' => 'lonja', 'Lj3C966T1' => 'lonja', 'Lj3g0018958' => 'lja', 'Lj3g0021831' => 'lja', 'Lj3g0025443' => 'lja', 'Lj4g0026809' => 'lja', 'Lj5g0012558' => 'lja', 'Lj5g0021586' => 'lja', 'Lsat_1_v5_gn_5_156840' => 'lsa', 'Lsat_1_v5_gn_8_73460' => 'lsa', 'Lsat_1_v5_gn_8_73481' => 'lsa', 'Lsat_1_v5_gn_9_31601' => 'lsa', 'Lsat_1_v5_gn_9_77320' => 'lsa', 'Manes.01G171300' => 'mes', 'Manes.01G171400' => 'mes', 'Manes.01G236100' => 'mes', 'Manes.02G130500' => 'mes', 'Manes.02G130600' => 'mes', 'Manes.03G180200' => 'mes', 'Manes.05G007000' => 'mes', 'Manes.08G084400' => 'mes', 'Manes.09G092600' => 'mes', 'Manes.15G027900' => 'mes', 'MBI04_g40948_MAGBIO' => 'mbi', 'MBI14_g12123_MAGBIO' => 'mbi', 'MBI18_g28915_MAGBIO' => 'mbi', 'MCO09G053' => 'mco', 'MCO11G782' => 'mco', 'MCO15G215' => 'mco', 'MD03G1088500' => 'mdo', 'MD03G1088600' => 'mdo', 'MD04G1130800' => 'mdo', 'MD09G1291700' => 'mdo', 'MD11G1097500' => 'mdo', 'MD11G1097600' => 'mdo', 'MD12G1143900' => 'mdo', 'MD13G1191400' => 'mdo', 'MD16G1191500' => 'mdo', 'Medtr1g085570' => 'mtr', 'Medtr1g104610' => 'mtr', 'Medtr2g097520' => 'mtr', 'Medtr4g021800' => 'mtr', 'Medtr4g021825' => 'mtr', 'Medtr4g064270' => 'mtr', 'Medtr4g064380' => 'mtr', 'Medtr7g062150' => 'mtr', 'MELO3C003138.2' => 'cme', 'MELO3C005187.2' => 'cme', 'MELO3C009252.2' => 'cme', 'MELO3C014481.2' => 'cme', 'MELO3C020616.2' => 'cme', 'MELO3C020617.2' => 'cme', 'MELO3C020618.2' => 'cme', 'Migut.G00328' => 'egut', 'Migut.J00320' => 'egut', 'Migut.L01000' => 'egut', 'Migut.L01953' => 'egut', 'MSTRG.10253' => 'ama', 'MSTRG.19077' => 'ama', 'MSTRG.26780' => 'ama', 'MSTRG.4023' => 'ama', 'MSTRG.5655' => 'ama', 'MSTRG.9992' => 'ama', 'Nitab4.5_0000043g0310' => 'nta', 'Nitab4.5_0000463g0080' => 'nta', 'Nitab4.5_0000705g0170' => 'nta', 'Nitab4.5_0001326g0060' => 'nta', 'Nitab4.5_0001628g0030' => 'nta', 'Nitab4.5_0002103g0110' => 'nta', 'Nitab4.5_0002946g0030' => 'nta', 'Nitab4.5_0004639g0030' => 'nta', 'Nn2g11149' => 'nnu', 'Nn2g13389' => 'nnu', 'Nn4g25326' => 'nnu', 'Nn4g26290' => 'nnu', 'Nn5g29865' => 'nnu', 'Oeu004163.1' => 'oeu', 'Oeu006901.1' => 'oeu', 'Oeu010096.1' => 'oeu', 'Oeu024340.1' => 'oeu', 'Oeu048369.1' => 'oeu', 'Os01g0973000' => 'osa', 'Os03g0273800' => 'osa', 'Os03g0701200' => 'osa', 'Os03g0834050' => 'osa', 'Os07g0634400' => 'osa', 'Peaxi162Scf00092g01414' => 'pax', 'Peaxi162Scf00165g00818' => 'pax', 'Peaxi162Scf00309g00516' => 'pax', 'Peaxi162Scf00774g00218' => 'pax', 'PGR004G1824' => 'pgr', 'PGR004G2606' => 'pgr', 'PGR031G2716' => 'pgr', 'PGR102G2460' => 'pgr', 'PGR142G2599' => 'pgr', 'PGSC0003DMG400000843' => 'stu', 'PGSC0003DMG400008829' => 'stu', 'PGSC0003DMG400030418' => 'stu', 'PGSC0003DMG400031834' => 'stu', 'PGSC0003DMG401028300' => 'stu', 'PGSC0003DMG402028300' => 'stu', 'Phvul.001G219300' => 'pvu', 'Phvul.007G056000' => 'pvu', 'Phvul.007G208000' => 'pvu', 'Phvul.008G119500' => 'pvu', 'Phvul.010G011200' => 'pvu', 'Phvul.010G014800' => 'pvu', 'Phvul.011G062900' => 'pvu', 'Phvul.L007043' => 'pvu', 'Potri.001G242300' => 'ptr', 'Potri.002G185300' => 'ptr', 'Potri.006G086900' => 'ptr', 'Potri.008G151700' => 'ptr', 'Potri.009G033500' => 'ptr', 'Potri.010G089300' => 'ptr', 'Potri.014G110800' => 'ptr', 'Pp3c27_8130' => 'ppa', 'Pp3c6_27410' => 'ppa', 'PRCOL_00001659' => 'pco', 'PRCOL_00001927' => 'pco', 'PRCOL_00003649' => 'pco', 'Prupe.1G011600' => 'ppe', 'Prupe.3G000800' => 'ppe', 'Prupe.3G001100' => 'ppe', 'Prupe.6G072700' => 'ppe', 'Prupe.6G072800' => 'ppe', 'Prupe.6G257300' => 'ppe', 'Prupe.8G033000' => 'ppe', 'Psat0s2633g0080' => 'psa', 'Psat0s3396g0080' => 'psa', 'Psat0s3396g0200' => 'psa', 'Psat3g139080' => 'psa', 'Psat5g285080' => 'psa', 'Psat6g157760' => 'psa', 'Psat6g208440' => 'psa', 'Psat7g215320' => 'psa', 'Psat7g215400' => 'psa', 'Psat7g235600' => 'psa', 'Psat7g235760' => 'psa', 'PSO063G4603' => 'pso', 'PSO210G0182' => 'pso', 'PSO210G0196' => 'pso', 'PSO339G0394' => 'pso', 'PSO339G4127' => 'pso', 'PSO513G0064' => 'pso', 'PSO761G0079' => 'pso', 'QL01p031003' => 'qlo', 'QL01p031078' => 'qlo', 'QL06p003004' => 'qlo', 'QL07p048731' => 'qlo', 'QL09p037427' => 'qlo', 'RcHm_v2.0_Chr3g0466361' => 'rch', 'RcHm_v2.0_Chr3g0485571' => 'rch', 'RcHm_v2.0_Chr4g0416551' => 'rch', 'RcHm_v2.0_Chr5g0065831' => 'rch', 'Rhsim01G0230500' => 'rsi', 'Rhsim05G0194000' => 'rsi', 'Rhsim08G0250400' => 'rsi', 'Sabra02G0131000' => 'sbr', 'Sabra06G0066300' => 'sbr', 'Sabra08G0115500' => 'sbr', 'Sabra09G0023900' => 'sbr', 'Sabra10G0054000' => 'sbr', 'Sabra14G0081500' => 'sbr', 'Sabra16G0147100' => 'sbr', 'SalBow2G2957' => 'sbo', 'SalBow4G3320' => 'sbo', 'SalBow8G1894' => 'sbo', 'Sc07g0007950' => 'sci', 'Sc12g0001360' => 'sci', 'Sc13g0004330' => 'sci', 'Sc20g0005010' => 'sci', 'Sed0000361' => 'sed', 'Sed0001706' => 'sed', 'Sed0002422' => 'sed', 'Sed0004029' => 'sed', 'Sed0004602' => 'sed', 'Sed0004943' => 'sed', 'Sed0008646' => 'sed', 'Sed0023313' => 'sed', 'Sed0024843' => 'sed', 'SEGI_00081' => 'sgi', 'SEGI_00947' => 'sgi', 'SEGI_04046' => 'sgi', 'SEGI_06880' => 'sgi', 'SEGI_09736' => 'sgi', 'SEGI_12741' => 'sgi', 'SEGI_14530' => 'sgi', 'SEGI_20705' => 'sgi', 'SEGI_26088' => 'sgi', 'SEGI_28323' => 'sgi', 'SEGI_33343' => 'sgi', 'SGA_v2.0_scaffold126G33775' => 'sas', 'SGA_v2.0_scaffold2G01337' => 'sas', 'SGA_v2.0_scaffold38G15006' => 'sas', 'SGA_v2.0_scaffold39G15264' => 'sas', 'SGA_v2.0_scaffold453G51880' => 'sas', 'SHI12696' => 'shi', 'SMO367G1096' => 'smo', 'Solyc01g068630.3' => 'sly', 'Solyc05g011880.3' => 'sly', 'Solyc06g076300.3' => 'sly', 'Solyc09g010940.4' => 'sly', 'Solyc09g075890.3' => 'sly', 'Sopen01g030560' => 'spe', 'Sopen05g006630' => 'spe', 'Sopen06g032720' => 'spe', 'Sopen09g005660' => 'spe', 'Sopen09g030690' => 'spe', 'Sp4g14540' => 'spa', 'Sp4g20030' => 'spa', 'Sp5g01320' => 'spa', 'Sp6g21170' => 'spa', 'Sp6g21180' => 'spa', 'Sp6g21190' => 'spa', 'Sp6g40220' => 'spa', 'TAR362G0122' => 'tar', 'TAR362G1338' => 'tar', 'TAR369G0590' => 'tar', 'TAR371G0824' => 'tar', 'TAR622G1429' => 'tar', 'TAR623G0734' => 'tar', 'TAR625G0441' => 'tar', 'TAR629G0976' => 'tar', 'TAR633G1195' => 'tar', 'TAR636G2660' => 'tar', 'THA.LOC104799440' => 'tha', 'THA.LOC104800966' => 'tha', 'THA.LOC104806559' => 'tha', 'THA.LOC104810765' => 'tha', 'THA.LOC104816266' => 'tha', 'THA.LOC104817419' => 'tha', 'THA.LOC104827021' => 'tha', 'Thecc.01G327400' => 'tca', 'Thecc.04G229200' => 'tca', 'Thecc.05G037400' => 'tca', 'Thecc.09G318600' => 'tca', 'Thecc.09G318700' => 'tca', 'Thhalv10006238m.g' => 'esa', 'Thhalv10014321m.g' => 'esa', 'Thhalv10014335m.g' => 'esa', 'Thhalv10015826m.g' => 'esa', 'Thhalv10017107m.g' => 'esa', 'Thhalv10017180m.g' => 'esa', 'Thhalv10029339m.g' => 'esa', 'TPR.G1699' => 'tpr', 'TPR.G23609' => 'tpr', 'TPR.G3081' => 'tpr', 'TPR.G40397' => 'tpr', 'TPR.G5522' => 'tpr', 'TPR.G5618' => 'tpr', 'TPR.G5626' => 'tpr', 'TWI09G1632' => 'twi', 'TWI23G1230' => 'twi', 'TWI53G1064' => 'twi', 'TWI59G0751' => 'twi', 'TWI74G0947' => 'twi', 'TWI77G0337' => 'twi', 'TWI79G1254' => 'twi', 'unitig_0.g2341' => 'ugi', 'unitig_26.g10006' => 'ugi', 'unitig_26.g10008' => 'ugi', 'unitig_26.g9192' => 'ugi', 'vmacro14547' => 'vma', 'vmacro15333' => 'vma', 'vmacro18743' => 'vma', 'vmacro20166' => 'vma', 'VMungo0331G0523' => 'vmu', 'VMungo0331G1202' => 'vmu', 'VMungo0720G1228' => 'vmu', 'VMungo0720G1514' => 'vmu', 'VMungo1080G0169' => 'vmu', 'VMungo1127G1475' => 'vmu', 'VMungo1383G1208' => 'vmu', 'VMungo1383G1698' => 'vmu', 'Zm00001eb012270' => 'zma', 'Zm00001eb054100' => 'zma', 'Zm00001eb063350' => 'zma', 'Zm00001eb328560' => 'zma', 'Zm00001eb342820' => 'zma', 'Zm00001eb362210' => 'zma', 'Zm00001eb397730' => 'zma', 'Zm00001eb399750' => 'zma' ), 'gf_id' => 'HOM05D000959', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000959' ), 'data_identifier' => 'HOM05D000959', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000959', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '622', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p07100' => 'bna', 'A03p11720' => 'bna', 'A05p08300' => 'bna', 'A05p13380' => 'bna', 'A09p54130' => 'bna', 'A10p16690' => 'bna', 'A10p16700' => 'bna', 'A10p33390' => 'bna', 'Aa31LG10G16020' => 'aar', 'Aa31LG1G11810' => 'aar', 'Aa31LG1G11830' => 'aar', 'Aa31LG1G22510' => 'aar', 'Aa31LG5G4890' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5793' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2310' => 'aag', 'Actinidia08499' => 'ach', 'Actinidia11262' => 'ach', 'Actinidia23926' => 'ach', 'Actinidia34420' => 'ach', 'Actinidia36970' => 'ach', 'Ah.02g111220' => 'amhyb', 'Ah.15g097750' => 'amhyb', 'AL4G27500' => 'aly', 'AL6G11470' => 'aly', 'AL8G35950' => 'aly', 'AL8G35960' => 'aly', 'AL8G35970' => 'aly', 'Aqoxy1G00912' => 'aox', 'Aqoxy2G02253' => 'aox', 'Aqoxy2G02411' => 'aox', 'Aqoxy5G00485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BZ66YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K8ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM4FUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6BF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HFV7XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25JBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0YNNV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MAKK6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P70IT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP2Z6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V61LZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YWP64R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3S9AI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7PGHH' => 'arhy', 'AT2G32150' => 'ath', 'AT3G62040' => 'ath', 'AT5G02230' => 'ath', 'AT5G59480' => 'ath', 'AT5G59490' => 'ath', 'ATR0332G060' => 'atr', 'ATR0559G190' => 'atr', 'ATR0693G294' => 'atr', 'Atru.chr3.3975' => 'acertr', 'Atru.chr3.3976' => 'acertr', 'Atru.chr3.3977' => 'acertr', 'Atru.chr4.2498' => 'acertr', 'Atru.chr5.838' => 'acertr', 'Atru.chr8.1990' => 'acertr', 'Atru.chr8.1991' => 'acertr', 'Atru.chr8.1992' => 'acertr', 'AUR62001759' => 'cqu', 'AUR62009545' => 'cqu', 'AUR62010474' => 'cqu', 'AUR62025820' => 'cqu', 'AUR62030422' => 'cqu', 'AUR62033605' => 'cqu', 'AUR62038615' => 'cqu', 'AUR62041347' => 'cqu', 'BcaB01g04574' => 'bca', 'BcaB02g09263' => 'bca', 'BcaB02g10453' => 'bca', 'BcaB05g22513' => 'bca', 'BcaB08g36253' => 'bca', 'BcaB08g36254' => 'bca', 'BcaC01g06519' => 'bca', 'BcaC02g11889' => 'bca', 'BcaC03g14010' => 'bca', 'BcaC03g18439' => 'bca', 'BcaC04g19765' => 'bca', 'BcaC09g48432' => 'bca', 'BcaNung07302' => 'bca', 'BolC2t06040H' => 'bol', 'BolC2t07346H' => 'bol', 'BolC3t13817H' => 'bol', 'BolC4t22625H' => 'bol', 'BolC4t23297H' => 'bol', 'BolC8t51278H' => 'bol', 'BolC9t58050H' => 'bol', 'BolC9t58051H' => 'bol', 'BolC9t60163H' => 'bol', 'BraA02t04712Z' => 'bra', 'BraA02t05791Z' => 'bra', 'BraA03t10483Z' => 'bra', 'BraA05t19795Z' => 'bra', 'BraA05t20276Z' => 'bra', 'BraA09t40827Z' => 'bra', 'BraA10t43750Z' => 'bra', 'BraA10t43751Z' => 'bra', 'BraA10t45370Z' => 'bra', 'C02p00400' => 'bna', 'C02p12460' => 'bna', 'C03p13680' => 'bna', 'C04p10270' => 'bna', 'C04p17500' => 'bna', 'C08p37010' => 'bna', 'C09p51880' => 'bna', 'C09p51890' => 'bna', 'C09p74300' => 'bna', 'CAN.G179.26' => 'can', 'CAN.G3384.1' => 'can', 'CAN.G394.68' => 'can', 'CAN.G907.13' => 'can', 'CANSAT11G0012' => 'cansat', 'CANSAT25G1586' => 'cansat', 'CANSAT35G0735' => 'cansat', 'CANSAT54G0556' => 'cansat', 'CANSAT64G0356' => 'cansat', 'CANSAT78G2042' => 'cansat', 'CARHR125920' => 'chi', 'CARHR131910' => 'chi', 'CARHR172390' => 'chi', 'CARHR211140' => 'chi', 'CARHR285850' => 'chi', 'CARHR285860' => 'chi', 'Carub.0004s1347' => 'cru', 'Carub.0004s1960' => 'cru', 'Carub.0005s2880' => 'cru', 'Carub.0006s0107' => 'cru', 'Carub.0008s2015' => 'cru', 'Carub.0008s2016' => 'cru', 'Carub.0008s2017' => 'cru', 'Ca_01315_v3' => 'car', 'Ca_05063_v3' => 'car', 'Ca_10231_v3' => 'car', 'Ca_10913_v3' => 'car', 'Ca_19156_v3' => 'car', 'Ca_23644_v3' => 'car', 'Ca_26735_v3' => 'car', 'Cc01_g13130' => 'ccan', 'Cc02_g21690' => 'ccan', 'Cc03_g03600' => 'ccan', 'Cc06_g02510' => 'ccan', 'CDE02G1265' => 'cde', 'CDE05G0415' => 'cde', 'CDE08G1082' => 'cde', 'Cfa005780' => 'cfa', 'Cfa011522' => 'cfa', 'Cfa011523' => 'cfa', 'Cfa015627' => 'cfa', 'Cfa017359' => 'cfa', 'Ciclev10005687m.g' => 'ccl', 'Ciclev10012173m.g' => 'ccl', 'Ciclev10021621m.g' => 'ccl', 'Ciclev10028968m.g' => 'ccl', 'Ciclev10029907m.g' => 'ccl', 'CiPaw.01G164800' => 'cil', 'CiPaw.07G083700' => 'cil', 'CiPaw.07G127000' => 'cil', 'CiPaw.07G136900' => 'cil', 'CiPaw.08G081700' => 'cil', 'CiPaw.09G194600' => 'cil', 'CiPaw.10G146500' => 'cil', 'CiPaw.13G091500' => 'cil', 'CiPaw.13G091600' => 'cil', 'ClCG00G003390' => 'cla', 'ClCG01G007220' => 'cla', 'ClCG03G001370' => 'cla', 'ClCG04G008100' => 'cla', 'ClCG06G006110' => 'cla', 'ClCG06G006130' => 'cla', 'ClCG10G021210' => 'cla', 'COL.COLO4_07648' => 'col', 'COL.COLO4_07650' => 'col', 'COL.COLO4_07651' => 'col', 'COL.COLO4_14780' => 'col', 'COL.COLO4_18546' => 'col', 'COL.COLO4_18547' => 'col', 'COL.COLO4_23103' => 'col', 'COL.COLO4_30419' => 'col', 'COL.COLO4_34232' => 'col', 'Cpa.g.sc169.20' => 'cpa', 'Cpa.g.sc57.45' => 'cpa', 'Cpa.g.sc58.124' => 'cpa', 'Cpa.g.sc58.125' => 'cpa', 'Cpa.g.sc81.118' => 'cpa', 'Cpa.g.sc81.119' => 'cpa', 'Cre12.g524700' => 'cre', 'CsaV3_1G034430' => 'csa', 'CsaV3_1G034440' => 'csa', 'CsaV3_1G034450' => 'csa', 'CsaV3_3G034830' => 'csa', 'CsaV3_4G025090' => 'csa', 'CsaV3_5G018660' => 'csa', 'CsaV3_6G038160' => 'csa', 'CSS0003447' => 'camsi', 'CSS0017840' => 'camsi', 'CSS0019260' => 'camsi', 'CSS0040375' => 'camsi', 'CSS0042533' => 'camsi', 'DCAR_005960' => 'dca', 'DCAR_012104' => 'dca', 'DCAR_012105' => 'dca', 'DCAR_012293' => 'dca', 'DCAR_015632' => 'dca', 'DCAR_024602' => 'dca', 'DCAR_028752' => 'dca', 'Dinv06261' => 'din', 'Dinv13982' => 'din', 'Dinv17029' => 'din', 'Dinv18463' => 'din', 'Dinv33181' => 'din', 'Dinv35585' => 'din', 'Dinv37161' => 'din', 'Dinv42977' => 'din', 'Dinv43122' => 'din', 'Dinv44517' => 'din', 'Duzib093G0256' => 'dzi', 'Duzib106G1254' => 'dzi', 'Duzib128G1789' => 'dzi', 'Duzib133G0633' => 'dzi', 'Duzib138G0510' => 'dzi', 'Duzib150G1084' => 'dzi', 'Duzib168G0488' => 'dzi', 'Duzib168G1523' => 'dzi', 'Duzib170G0133' => 'dzi', 'ECA234G1433' => 'eca', 'ECA236G1432' => 'eca', 'ECA236G2256' => 'eca', 'ECA236G2365' => 'eca', 'ECA236G4830' => 'eca', 'ECA248G1505' => 'eca', 'EL10Ac3g06431' => 'bvu', 'EL10Ac5g12577' => 'bvu', 'EL10Ac6g13533' => 'bvu', 'EL10Ac7g16045' => 'bvu', 'Eucgr.A01281' => 'egr', 'Eucgr.B02326' => 'egr', 'Eucgr.H03532' => 'egr', 'Eucgr.K00553' => 'egr', 'Eucgr.K03116' => 'egr', 'FAN02G3963' => 'fan', 'FAN05G0438' => 'fan', 'FAN09G2434' => 'fan', 'FAN12G3984' => 'fan', 'FAN14G0798' => 'fan', 'FAN17G0652' => 'fan', 'FAN19G1988' => 'fan', 'FAN22G0632' => 'fan', 'FAN23G0387' => 'fan', 'FAN26G1323' => 'fan', 'FAN28G0666' => 'fan', 'FvH4_1g26080' => 'fve', 'FvH4_3g36780' => 'fve', 'FvH4_4g15270' => 'fve', 'FvH4_6g13490' => 'fve', 'Glyma.01G098700' => 'gma', 'Glyma.03G065900' => 'gma', 'Glyma.03G073754' => 'gma', 'Glyma.03G073758' => 'gma', 'Glyma.03G083200' => 'gma', 'Glyma.03G225500' => 'gma', 'Glyma.05G037766' => 'gma', 'Glyma.07G133500' => 'gma', 'Glyma.10G139400' => 'gma', 'Glyma.10G248900' => 'gma', 'Glyma.11G137800' => 'gma', 'Glyma.12G061300' => 'gma', 'Glyma.13G337900' => 'gma', 'Glyma.15G036600' => 'gma', 'Glyma.18G182800' => 'gma', 'Glyma.19G222500' => 'gma', 'Glyma.20G144800' => 'gma', 'Gohir.A01G222000' => 'ghi', 'Gohir.A03G044000' => 'ghi', 'Gohir.A03G044100' => 'ghi', 'Gohir.A04G083100' => 'ghi', 'Gohir.A07G127200' => 'ghi', 'Gohir.A07G132400' => 'ghi', 'Gohir.A08G000700' => 'ghi', 'Gohir.A11G327300' => 'ghi', 'Gohir.D01G211500' => 'ghi', 'Gohir.D03G123400' => 'ghi', 'Gohir.D03G123500' => 'ghi', 'Gohir.D04G121800' => 'ghi', 'Gohir.D07G131500' => 'ghi', 'Gohir.D07G136600' => 'ghi', 'Gohir.D08G011600' => 'ghi', 'Gohir.D11G346200' => 'ghi', 'Gorai.001G142800' => 'gra', 'Gorai.001G148700' => 'gra', 'Gorai.002G257300' => 'gra', 'Gorai.003G130000' => 'gra', 'Gorai.003G130100' => 'gra', 'Gorai.004G005300' => 'gra', 'Gorai.007G376500' => 'gra', 'Gorai.012G104700' => 'gra', 'GSVIVG01017946001' => 'vvi', 'GSVIVG01024928001' => 'vvi', 'GSVIVG01028227001' => 'vvi', 'GSVIVG01034151001' => 'vvi', 'HanXRQChr05g0135031' => 'han', 'HanXRQChr05g0135041' => 'han', 'HanXRQChr05g0140021' => 'han', 'HanXRQChr06g0178981' => 'han', 'HanXRQChr07g0188251' => 'han', 'HanXRQChr08g0235311' => 'han', 'HanXRQChr09g0271011' => 'han', 'HanXRQChr10g0293321' => 'han', 'HanXRQChr13g0388171' => 'han', 'Haze_00916' => 'cav', 'Haze_05063' => 'cav', 'Haze_20814' => 'cav', 'Haze_24128' => 'cav', 'Hma1.2p1_0745F.1_g212010' => 'hma', 'Hma1.2p1_0757F.1_g213260' => 'hma', 'Hma1.2p1_0936F.1_g238840' => 'hma', 'Hma1.2p1_1735F.1_g299890' => 'hma', 'Hma1.2p1_1861F.1_g305685' => 'hma', 'HPP92_003397' => 'vpl', 'HPP92_012597' => 'vpl', 'HPP92_015520' => 'vpl', 'HPP92_015539' => 'vpl', 'HPP92_020373' => 'vpl', 'Hund04938' => 'sun', 'Hund10677' => 'sun', 'Hund11033' => 'sun', 'Hund12155' => 'sun', 'Lalb_Chr01g0022551' => 'lal', 'Lalb_Chr03g0042341' => 'lal', 'Lalb_Chr07g0192931' => 'lal', 'Lalb_Chr12g0209551' => 'lal', 'Lalb_Chr19g0125251' => 'lal', 'Lalb_Chr19g0137891' => 'lal', 'Lalb_Chr21g0304641' => 'lal', 'Lalb_Chr21g0309881' => 'lal', 'Lj1A5T12' => 'lonja', 'Lj1C148G10' => 'lonja', 'Lj2A93T83' => 'lonja', 'Lj3A738G68' => 'lonja', 'Lj3C966T1' => 'lonja', 'Lj3g0018958' => 'lja', 'Lj3g0021831' => 'lja', 'Lj3g0025443' => 'lja', 'Lj4g0026809' => 'lja', 'Lj5g0012558' => 'lja', 'Lj5g0021586' => 'lja', 'Lsat_1_v5_gn_5_156840' => 'lsa', 'Lsat_1_v5_gn_8_73460' => 'lsa', 'Lsat_1_v5_gn_8_73481' => 'lsa', 'Lsat_1_v5_gn_9_31601' => 'lsa', 'Lsat_1_v5_gn_9_77320' => 'lsa', 'Manes.01G171300' => 'mes', 'Manes.01G171400' => 'mes', 'Manes.01G236100' => 'mes', 'Manes.02G130500' => 'mes', 'Manes.02G130600' => 'mes', 'Manes.03G180200' => 'mes', 'Manes.05G007000' => 'mes', 'Manes.08G084400' => 'mes', 'Manes.09G092600' => 'mes', 'Manes.15G027900' => 'mes', 'MBI04_g40948_MAGBIO' => 'mbi', 'MBI14_g12123_MAGBIO' => 'mbi', 'MBI18_g28915_MAGBIO' => 'mbi', 'MCO09G053' => 'mco', 'MCO11G782' => 'mco', 'MCO15G215' => 'mco', 'MD03G1088500' => 'mdo', 'MD03G1088600' => 'mdo', 'MD04G1130800' => 'mdo', 'MD09G1291700' => 'mdo', 'MD11G1097500' => 'mdo', 'MD11G1097600' => 'mdo', 'MD12G1143900' => 'mdo', 'MD13G1191400' => 'mdo', 'MD16G1191500' => 'mdo', 'Medtr1g085570' => 'mtr', 'Medtr1g104610' => 'mtr', 'Medtr2g097520' => 'mtr', 'Medtr4g021800' => 'mtr', 'Medtr4g021825' => 'mtr', 'Medtr4g064270' => 'mtr', 'Medtr4g064380' => 'mtr', 'Medtr7g062150' => 'mtr', 'MELO3C003138.2' => 'cme', 'MELO3C005187.2' => 'cme', 'MELO3C009252.2' => 'cme', 'MELO3C014481.2' => 'cme', 'MELO3C020616.2' => 'cme', 'MELO3C020617.2' => 'cme', 'MELO3C020618.2' => 'cme', 'Migut.G00328' => 'egut', 'Migut.J00320' => 'egut', 'Migut.L01000' => 'egut', 'Migut.L01953' => 'egut', 'MSTRG.10253' => 'ama', 'MSTRG.19077' => 'ama', 'MSTRG.26780' => 'ama', 'MSTRG.4023' => 'ama', 'MSTRG.5655' => 'ama', 'MSTRG.9992' => 'ama', 'Nitab4.5_0000043g0310' => 'nta', 'Nitab4.5_0000463g0080' => 'nta', 'Nitab4.5_0000705g0170' => 'nta', 'Nitab4.5_0001326g0060' => 'nta', 'Nitab4.5_0001628g0030' => 'nta', 'Nitab4.5_0002103g0110' => 'nta', 'Nitab4.5_0002946g0030' => 'nta', 'Nitab4.5_0004639g0030' => 'nta', 'Nn2g11149' => 'nnu', 'Nn2g13389' => 'nnu', 'Nn4g25326' => 'nnu', 'Nn4g26290' => 'nnu', 'Nn5g29865' => 'nnu', 'Oeu004163.1' => 'oeu', 'Oeu006901.1' => 'oeu', 'Oeu010096.1' => 'oeu', 'Oeu024340.1' => 'oeu', 'Oeu048369.1' => 'oeu', 'Os01g0973000' => 'osa', 'Os03g0273800' => 'osa', 'Os03g0701200' => 'osa', 'Os03g0834050' => 'osa', 'Os07g0634400' => 'osa', 'Peaxi162Scf00092g01414' => 'pax', 'Peaxi162Scf00165g00818' => 'pax', 'Peaxi162Scf00309g00516' => 'pax', 'Peaxi162Scf00774g00218' => 'pax', 'PGR004G1824' => 'pgr', 'PGR004G2606' => 'pgr', 'PGR031G2716' => 'pgr', 'PGR102G2460' => 'pgr', 'PGR142G2599' => 'pgr', 'PGSC0003DMG400000843' => 'stu', 'PGSC0003DMG400008829' => 'stu', 'PGSC0003DMG400030418' => 'stu', 'PGSC0003DMG400031834' => 'stu', 'PGSC0003DMG401028300' => 'stu', 'PGSC0003DMG402028300' => 'stu', 'Phvul.001G219300' => 'pvu', 'Phvul.007G056000' => 'pvu', 'Phvul.007G208000' => 'pvu', 'Phvul.008G119500' => 'pvu', 'Phvul.010G011200' => 'pvu', 'Phvul.010G014800' => 'pvu', 'Phvul.011G062900' => 'pvu', 'Phvul.L007043' => 'pvu', 'Potri.001G242300' => 'ptr', 'Potri.002G185300' => 'ptr', 'Potri.006G086900' => 'ptr', 'Potri.008G151700' => 'ptr', 'Potri.009G033500' => 'ptr', 'Potri.010G089300' => 'ptr', 'Potri.014G110800' => 'ptr', 'Pp3c27_8130' => 'ppa', 'Pp3c6_27410' => 'ppa', 'PRCOL_00001659' => 'pco', 'PRCOL_00001927' => 'pco', 'PRCOL_00003649' => 'pco', 'Prupe.1G011600' => 'ppe', 'Prupe.3G000800' => 'ppe', 'Prupe.3G001100' => 'ppe', 'Prupe.6G072700' => 'ppe', 'Prupe.6G072800' => 'ppe', 'Prupe.6G257300' => 'ppe', 'Prupe.8G033000' => 'ppe', 'Psat0s2633g0080' => 'psa', 'Psat0s3396g0080' => 'psa', 'Psat0s3396g0200' => 'psa', 'Psat3g139080' => 'psa', 'Psat5g285080' => 'psa', 'Psat6g157760' => 'psa', 'Psat6g208440' => 'psa', 'Psat7g215320' => 'psa', 'Psat7g215400' => 'psa', 'Psat7g235600' => 'psa', 'Psat7g235760' => 'psa', 'PSO063G4603' => 'pso', 'PSO210G0182' => 'pso', 'PSO210G0196' => 'pso', 'PSO339G0394' => 'pso', 'PSO339G4127' => 'pso', 'PSO513G0064' => 'pso', 'PSO761G0079' => 'pso', 'QL01p031003' => 'qlo', 'QL01p031078' => 'qlo', 'QL06p003004' => 'qlo', 'QL07p048731' => 'qlo', 'QL09p037427' => 'qlo', 'RcHm_v2.0_Chr3g0466361' => 'rch', 'RcHm_v2.0_Chr3g0485571' => 'rch', 'RcHm_v2.0_Chr4g0416551' => 'rch', 'RcHm_v2.0_Chr5g0065831' => 'rch', 'Rhsim01G0230500' => 'rsi', 'Rhsim05G0194000' => 'rsi', 'Rhsim08G0250400' => 'rsi', 'Sabra02G0131000' => 'sbr', 'Sabra06G0066300' => 'sbr', 'Sabra08G0115500' => 'sbr', 'Sabra09G0023900' => 'sbr', 'Sabra10G0054000' => 'sbr', 'Sabra14G0081500' => 'sbr', 'Sabra16G0147100' => 'sbr', 'SalBow2G2957' => 'sbo', 'SalBow4G3320' => 'sbo', 'SalBow8G1894' => 'sbo', 'Sc07g0007950' => 'sci', 'Sc12g0001360' => 'sci', 'Sc13g0004330' => 'sci', 'Sc20g0005010' => 'sci', 'Sed0000361' => 'sed', 'Sed0001706' => 'sed', 'Sed0002422' => 'sed', 'Sed0004029' => 'sed', 'Sed0004602' => 'sed', 'Sed0004943' => 'sed', 'Sed0008646' => 'sed', 'Sed0023313' => 'sed', 'Sed0024843' => 'sed', 'SEGI_00081' => 'sgi', 'SEGI_00947' => 'sgi', 'SEGI_04046' => 'sgi', 'SEGI_06880' => 'sgi', 'SEGI_09736' => 'sgi', 'SEGI_12741' => 'sgi', 'SEGI_14530' => 'sgi', 'SEGI_20705' => 'sgi', 'SEGI_26088' => 'sgi', 'SEGI_28323' => 'sgi', 'SEGI_33343' => 'sgi', 'SGA_v2.0_scaffold126G33775' => 'sas', 'SGA_v2.0_scaffold2G01337' => 'sas', 'SGA_v2.0_scaffold38G15006' => 'sas', 'SGA_v2.0_scaffold39G15264' => 'sas', 'SGA_v2.0_scaffold453G51880' => 'sas', 'SHI12696' => 'shi', 'SMO367G1096' => 'smo', 'Solyc01g068630.3' => 'sly', 'Solyc05g011880.3' => 'sly', 'Solyc06g076300.3' => 'sly', 'Solyc09g010940.4' => 'sly', 'Solyc09g075890.3' => 'sly', 'Sopen01g030560' => 'spe', 'Sopen05g006630' => 'spe', 'Sopen06g032720' => 'spe', 'Sopen09g005660' => 'spe', 'Sopen09g030690' => 'spe', 'Sp4g14540' => 'spa', 'Sp4g20030' => 'spa', 'Sp5g01320' => 'spa', 'Sp6g21170' => 'spa', 'Sp6g21180' => 'spa', 'Sp6g21190' => 'spa', 'Sp6g40220' => 'spa', 'TAR362G0122' => 'tar', 'TAR362G1338' => 'tar', 'TAR369G0590' => 'tar', 'TAR371G0824' => 'tar', 'TAR622G1429' => 'tar', 'TAR623G0734' => 'tar', 'TAR625G0441' => 'tar', 'TAR629G0976' => 'tar', 'TAR633G1195' => 'tar', 'TAR636G2660' => 'tar', 'THA.LOC104799440' => 'tha', 'THA.LOC104800966' => 'tha', 'THA.LOC104806559' => 'tha', 'THA.LOC104810765' => 'tha', 'THA.LOC104816266' => 'tha', 'THA.LOC104817419' => 'tha', 'THA.LOC104827021' => 'tha', 'Thecc.01G327400' => 'tca', 'Thecc.04G229200' => 'tca', 'Thecc.05G037400' => 'tca', 'Thecc.09G318600' => 'tca', 'Thecc.09G318700' => 'tca', 'Thhalv10006238m.g' => 'esa', 'Thhalv10014321m.g' => 'esa', 'Thhalv10014335m.g' => 'esa', 'Thhalv10015826m.g' => 'esa', 'Thhalv10017107m.g' => 'esa', 'Thhalv10017180m.g' => 'esa', 'Thhalv10029339m.g' => 'esa', 'TPR.G1699' => 'tpr', 'TPR.G23609' => 'tpr', 'TPR.G3081' => 'tpr', 'TPR.G40397' => 'tpr', 'TPR.G5522' => 'tpr', 'TPR.G5618' => 'tpr', 'TPR.G5626' => 'tpr', 'TWI09G1632' => 'twi', 'TWI23G1230' => 'twi', 'TWI53G1064' => 'twi', 'TWI59G0751' => 'twi', 'TWI74G0947' => 'twi', 'TWI77G0337' => 'twi', 'TWI79G1254' => 'twi', 'unitig_0.g2341' => 'ugi', 'unitig_26.g10006' => 'ugi', 'unitig_26.g10008' => 'ugi', 'unitig_26.g9192' => 'ugi', 'vmacro14547' => 'vma', 'vmacro15333' => 'vma', 'vmacro18743' => 'vma', 'vmacro20166' => 'vma', 'VMungo0331G0523' => 'vmu', 'VMungo0331G1202' => 'vmu', 'VMungo0720G1228' => 'vmu', 'VMungo0720G1514' => 'vmu', 'VMungo1080G0169' => 'vmu', 'VMungo1127G1475' => 'vmu', 'VMungo1383G1208' => 'vmu', 'VMungo1383G1698' => 'vmu', 'Zm00001eb012270' => 'zma', 'Zm00001eb054100' => 'zma', 'Zm00001eb063350' => 'zma', 'Zm00001eb328560' => 'zma', 'Zm00001eb342820' => 'zma', 'Zm00001eb362210' => 'zma', 'Zm00001eb397730' => 'zma', 'Zm00001eb399750' => 'zma' ) $gf_id = 'HOM05D000959' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000959' ) $data_identifier = 'HOM05D000959' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 5, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 5, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 10, 'mbi' => (int) 3, 'mco' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 2, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 3, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 11, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399750' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000959', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '622', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p07100' => 'bna', 'A03p11720' => 'bna', 'A05p08300' => 'bna', 'A05p13380' => 'bna', 'A09p54130' => 'bna', 'A10p16690' => 'bna', 'A10p16700' => 'bna', 'A10p33390' => 'bna', 'Aa31LG10G16020' => 'aar', 'Aa31LG1G11810' => 'aar', 'Aa31LG1G11830' => 'aar', 'Aa31LG1G22510' => 'aar', 'Aa31LG5G4890' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5793' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2310' => 'aag', 'Actinidia08499' => 'ach', 'Actinidia11262' => 'ach', 'Actinidia23926' => 'ach', 'Actinidia34420' => 'ach', 'Actinidia36970' => 'ach', 'Ah.02g111220' => 'amhyb', 'Ah.15g097750' => 'amhyb', 'AL4G27500' => 'aly', 'AL6G11470' => 'aly', 'AL8G35950' => 'aly', 'AL8G35960' => 'aly', 'AL8G35970' => 'aly', 'Aqoxy1G00912' => 'aox', 'Aqoxy2G02253' => 'aox', 'Aqoxy2G02411' => 'aox', 'Aqoxy5G00485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BZ66YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K8ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM4FUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6BF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HFV7XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25JBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0YNNV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MAKK6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P70IT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP2Z6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V61LZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YWP64R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3S9AI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7PGHH' => 'arhy', 'AT2G32150' => 'ath', 'AT3G62040' => 'ath', 'AT5G02230' => 'ath', 'AT5G59480' => 'ath', 'AT5G59490' => 'ath', 'ATR0332G060' => 'atr', 'ATR0559G190' => 'atr', 'ATR0693G294' => 'atr', 'Atru.chr3.3975' => 'acertr', 'Atru.chr3.3976' => 'acertr', 'Atru.chr3.3977' => 'acertr', 'Atru.chr4.2498' => 'acertr', 'Atru.chr5.838' => 'acertr', 'Atru.chr8.1990' => 'acertr', 'Atru.chr8.1991' => 'acertr', 'Atru.chr8.1992' => 'acertr', 'AUR62001759' => 'cqu', 'AUR62009545' => 'cqu', 'AUR62010474' => 'cqu', 'AUR62025820' => 'cqu', 'AUR62030422' => 'cqu', 'AUR62033605' => 'cqu', 'AUR62038615' => 'cqu', 'AUR62041347' => 'cqu', 'BcaB01g04574' => 'bca', 'BcaB02g09263' => 'bca', 'BcaB02g10453' => 'bca', 'BcaB05g22513' => 'bca', 'BcaB08g36253' => 'bca', 'BcaB08g36254' => 'bca', 'BcaC01g06519' => 'bca', 'BcaC02g11889' => 'bca', 'BcaC03g14010' => 'bca', 'BcaC03g18439' => 'bca', 'BcaC04g19765' => 'bca', 'BcaC09g48432' => 'bca', 'BcaNung07302' => 'bca', 'BolC2t06040H' => 'bol', 'BolC2t07346H' => 'bol', 'BolC3t13817H' => 'bol', 'BolC4t22625H' => 'bol', 'BolC4t23297H' => 'bol', 'BolC8t51278H' => 'bol', 'BolC9t58050H' => 'bol', 'BolC9t58051H' => 'bol', 'BolC9t60163H' => 'bol', 'BraA02t04712Z' => 'bra', 'BraA02t05791Z' => 'bra', 'BraA03t10483Z' => 'bra', 'BraA05t19795Z' => 'bra', 'BraA05t20276Z' => 'bra', 'BraA09t40827Z' => 'bra', 'BraA10t43750Z' => 'bra', 'BraA10t43751Z' => 'bra', 'BraA10t45370Z' => 'bra', 'C02p00400' => 'bna', 'C02p12460' => 'bna', 'C03p13680' => 'bna', 'C04p10270' => 'bna', 'C04p17500' => 'bna', 'C08p37010' => 'bna', 'C09p51880' => 'bna', 'C09p51890' => 'bna', 'C09p74300' => 'bna', 'CAN.G179.26' => 'can', 'CAN.G3384.1' => 'can', 'CAN.G394.68' => 'can', 'CAN.G907.13' => 'can', 'CANSAT11G0012' => 'cansat', 'CANSAT25G1586' => 'cansat', 'CANSAT35G0735' => 'cansat', 'CANSAT54G0556' => 'cansat', 'CANSAT64G0356' => 'cansat', 'CANSAT78G2042' => 'cansat', 'CARHR125920' => 'chi', 'CARHR131910' => 'chi', 'CARHR172390' => 'chi', 'CARHR211140' => 'chi', 'CARHR285850' => 'chi', 'CARHR285860' => 'chi', 'Carub.0004s1347' => 'cru', 'Carub.0004s1960' => 'cru', 'Carub.0005s2880' => 'cru', 'Carub.0006s0107' => 'cru', 'Carub.0008s2015' => 'cru', 'Carub.0008s2016' => 'cru', 'Carub.0008s2017' => 'cru', 'Ca_01315_v3' => 'car', 'Ca_05063_v3' => 'car', 'Ca_10231_v3' => 'car', 'Ca_10913_v3' => 'car', 'Ca_19156_v3' => 'car', 'Ca_23644_v3' => 'car', 'Ca_26735_v3' => 'car', 'Cc01_g13130' => 'ccan', 'Cc02_g21690' => 'ccan', 'Cc03_g03600' => 'ccan', 'Cc06_g02510' => 'ccan', 'CDE02G1265' => 'cde', 'CDE05G0415' => 'cde', 'CDE08G1082' => 'cde', 'Cfa005780' => 'cfa', 'Cfa011522' => 'cfa', 'Cfa011523' => 'cfa', 'Cfa015627' => 'cfa', 'Cfa017359' => 'cfa', 'Ciclev10005687m.g' => 'ccl', 'Ciclev10012173m.g' => 'ccl', 'Ciclev10021621m.g' => 'ccl', 'Ciclev10028968m.g' => 'ccl', 'Ciclev10029907m.g' => 'ccl', 'CiPaw.01G164800' => 'cil', 'CiPaw.07G083700' => 'cil', 'CiPaw.07G127000' => 'cil', 'CiPaw.07G136900' => 'cil', 'CiPaw.08G081700' => 'cil', 'CiPaw.09G194600' => 'cil', 'CiPaw.10G146500' => 'cil', 'CiPaw.13G091500' => 'cil', 'CiPaw.13G091600' => 'cil', 'ClCG00G003390' => 'cla', 'ClCG01G007220' => 'cla', 'ClCG03G001370' => 'cla', 'ClCG04G008100' => 'cla', 'ClCG06G006110' => 'cla', 'ClCG06G006130' => 'cla', 'ClCG10G021210' => 'cla', 'COL.COLO4_07648' => 'col', 'COL.COLO4_07650' => 'col', 'COL.COLO4_07651' => 'col', 'COL.COLO4_14780' => 'col', 'COL.COLO4_18546' => 'col', 'COL.COLO4_18547' => 'col', 'COL.COLO4_23103' => 'col', 'COL.COLO4_30419' => 'col', 'COL.COLO4_34232' => 'col', 'Cpa.g.sc169.20' => 'cpa', 'Cpa.g.sc57.45' => 'cpa', 'Cpa.g.sc58.124' => 'cpa', 'Cpa.g.sc58.125' => 'cpa', 'Cpa.g.sc81.118' => 'cpa', 'Cpa.g.sc81.119' => 'cpa', 'Cre12.g524700' => 'cre', 'CsaV3_1G034430' => 'csa', 'CsaV3_1G034440' => 'csa', 'CsaV3_1G034450' => 'csa', 'CsaV3_3G034830' => 'csa', 'CsaV3_4G025090' => 'csa', 'CsaV3_5G018660' => 'csa', 'CsaV3_6G038160' => 'csa', 'CSS0003447' => 'camsi', 'CSS0017840' => 'camsi', 'CSS0019260' => 'camsi', 'CSS0040375' => 'camsi', 'CSS0042533' => 'camsi', 'DCAR_005960' => 'dca', 'DCAR_012104' => 'dca', 'DCAR_012105' => 'dca', 'DCAR_012293' => 'dca', 'DCAR_015632' => 'dca', 'DCAR_024602' => 'dca', 'DCAR_028752' => 'dca', 'Dinv06261' => 'din', 'Dinv13982' => 'din', 'Dinv17029' => 'din', 'Dinv18463' => 'din', 'Dinv33181' => 'din', 'Dinv35585' => 'din', 'Dinv37161' => 'din', 'Dinv42977' => 'din', 'Dinv43122' => 'din', 'Dinv44517' => 'din', 'Duzib093G0256' => 'dzi', 'Duzib106G1254' => 'dzi', 'Duzib128G1789' => 'dzi', 'Duzib133G0633' => 'dzi', 'Duzib138G0510' => 'dzi', 'Duzib150G1084' => 'dzi', 'Duzib168G0488' => 'dzi', 'Duzib168G1523' => 'dzi', 'Duzib170G0133' => 'dzi', 'ECA234G1433' => 'eca', 'ECA236G1432' => 'eca', 'ECA236G2256' => 'eca', 'ECA236G2365' => 'eca', 'ECA236G4830' => 'eca', 'ECA248G1505' => 'eca', 'EL10Ac3g06431' => 'bvu', 'EL10Ac5g12577' => 'bvu', 'EL10Ac6g13533' => 'bvu', 'EL10Ac7g16045' => 'bvu', 'Eucgr.A01281' => 'egr', 'Eucgr.B02326' => 'egr', 'Eucgr.H03532' => 'egr', 'Eucgr.K00553' => 'egr', 'Eucgr.K03116' => 'egr', 'FAN02G3963' => 'fan', 'FAN05G0438' => 'fan', 'FAN09G2434' => 'fan', 'FAN12G3984' => 'fan', 'FAN14G0798' => 'fan', 'FAN17G0652' => 'fan', 'FAN19G1988' => 'fan', 'FAN22G0632' => 'fan', 'FAN23G0387' => 'fan', 'FAN26G1323' => 'fan', 'FAN28G0666' => 'fan', 'FvH4_1g26080' => 'fve', 'FvH4_3g36780' => 'fve', 'FvH4_4g15270' => 'fve', 'FvH4_6g13490' => 'fve', 'Glyma.01G098700' => 'gma', 'Glyma.03G065900' => 'gma', 'Glyma.03G073754' => 'gma', 'Glyma.03G073758' => 'gma', 'Glyma.03G083200' => 'gma', 'Glyma.03G225500' => 'gma', 'Glyma.05G037766' => 'gma', 'Glyma.07G133500' => 'gma', 'Glyma.10G139400' => 'gma', 'Glyma.10G248900' => 'gma', 'Glyma.11G137800' => 'gma', 'Glyma.12G061300' => 'gma', 'Glyma.13G337900' => 'gma', 'Glyma.15G036600' => 'gma', 'Glyma.18G182800' => 'gma', 'Glyma.19G222500' => 'gma', 'Glyma.20G144800' => 'gma', 'Gohir.A01G222000' => 'ghi', 'Gohir.A03G044000' => 'ghi', 'Gohir.A03G044100' => 'ghi', 'Gohir.A04G083100' => 'ghi', 'Gohir.A07G127200' => 'ghi', 'Gohir.A07G132400' => 'ghi', 'Gohir.A08G000700' => 'ghi', 'Gohir.A11G327300' => 'ghi', 'Gohir.D01G211500' => 'ghi', 'Gohir.D03G123400' => 'ghi', 'Gohir.D03G123500' => 'ghi', 'Gohir.D04G121800' => 'ghi', 'Gohir.D07G131500' => 'ghi', 'Gohir.D07G136600' => 'ghi', 'Gohir.D08G011600' => 'ghi', 'Gohir.D11G346200' => 'ghi', 'Gorai.001G142800' => 'gra', 'Gorai.001G148700' => 'gra', 'Gorai.002G257300' => 'gra', 'Gorai.003G130000' => 'gra', 'Gorai.003G130100' => 'gra', 'Gorai.004G005300' => 'gra', 'Gorai.007G376500' => 'gra', 'Gorai.012G104700' => 'gra', 'GSVIVG01017946001' => 'vvi', 'GSVIVG01024928001' => 'vvi', 'GSVIVG01028227001' => 'vvi', 'GSVIVG01034151001' => 'vvi', 'HanXRQChr05g0135031' => 'han', 'HanXRQChr05g0135041' => 'han', 'HanXRQChr05g0140021' => 'han', 'HanXRQChr06g0178981' => 'han', 'HanXRQChr07g0188251' => 'han', 'HanXRQChr08g0235311' => 'han', 'HanXRQChr09g0271011' => 'han', 'HanXRQChr10g0293321' => 'han', 'HanXRQChr13g0388171' => 'han', 'Haze_00916' => 'cav', 'Haze_05063' => 'cav', 'Haze_20814' => 'cav', 'Haze_24128' => 'cav', 'Hma1.2p1_0745F.1_g212010' => 'hma', 'Hma1.2p1_0757F.1_g213260' => 'hma', 'Hma1.2p1_0936F.1_g238840' => 'hma', 'Hma1.2p1_1735F.1_g299890' => 'hma', 'Hma1.2p1_1861F.1_g305685' => 'hma', 'HPP92_003397' => 'vpl', 'HPP92_012597' => 'vpl', 'HPP92_015520' => 'vpl', 'HPP92_015539' => 'vpl', 'HPP92_020373' => 'vpl', 'Hund04938' => 'sun', 'Hund10677' => 'sun', 'Hund11033' => 'sun', 'Hund12155' => 'sun', 'Lalb_Chr01g0022551' => 'lal', 'Lalb_Chr03g0042341' => 'lal', 'Lalb_Chr07g0192931' => 'lal', 'Lalb_Chr12g0209551' => 'lal', 'Lalb_Chr19g0125251' => 'lal', 'Lalb_Chr19g0137891' => 'lal', 'Lalb_Chr21g0304641' => 'lal', 'Lalb_Chr21g0309881' => 'lal', 'Lj1A5T12' => 'lonja', 'Lj1C148G10' => 'lonja', 'Lj2A93T83' => 'lonja', 'Lj3A738G68' => 'lonja', 'Lj3C966T1' => 'lonja', 'Lj3g0018958' => 'lja', 'Lj3g0021831' => 'lja', 'Lj3g0025443' => 'lja', 'Lj4g0026809' => 'lja', 'Lj5g0012558' => 'lja', 'Lj5g0021586' => 'lja', 'Lsat_1_v5_gn_5_156840' => 'lsa', 'Lsat_1_v5_gn_8_73460' => 'lsa', 'Lsat_1_v5_gn_8_73481' => 'lsa', 'Lsat_1_v5_gn_9_31601' => 'lsa', 'Lsat_1_v5_gn_9_77320' => 'lsa', 'Manes.01G171300' => 'mes', 'Manes.01G171400' => 'mes', 'Manes.01G236100' => 'mes', 'Manes.02G130500' => 'mes', 'Manes.02G130600' => 'mes', 'Manes.03G180200' => 'mes', 'Manes.05G007000' => 'mes', 'Manes.08G084400' => 'mes', 'Manes.09G092600' => 'mes', 'Manes.15G027900' => 'mes', 'MBI04_g40948_MAGBIO' => 'mbi', 'MBI14_g12123_MAGBIO' => 'mbi', 'MBI18_g28915_MAGBIO' => 'mbi', 'MCO09G053' => 'mco', 'MCO11G782' => 'mco', 'MCO15G215' => 'mco', 'MD03G1088500' => 'mdo', 'MD03G1088600' => 'mdo', 'MD04G1130800' => 'mdo', 'MD09G1291700' => 'mdo', 'MD11G1097500' => 'mdo', 'MD11G1097600' => 'mdo', 'MD12G1143900' => 'mdo', 'MD13G1191400' => 'mdo', 'MD16G1191500' => 'mdo', 'Medtr1g085570' => 'mtr', 'Medtr1g104610' => 'mtr', 'Medtr2g097520' => 'mtr', 'Medtr4g021800' => 'mtr', 'Medtr4g021825' => 'mtr', 'Medtr4g064270' => 'mtr', 'Medtr4g064380' => 'mtr', 'Medtr7g062150' => 'mtr', 'MELO3C003138.2' => 'cme', 'MELO3C005187.2' => 'cme', 'MELO3C009252.2' => 'cme', 'MELO3C014481.2' => 'cme', 'MELO3C020616.2' => 'cme', 'MELO3C020617.2' => 'cme', 'MELO3C020618.2' => 'cme', 'Migut.G00328' => 'egut', 'Migut.J00320' => 'egut', 'Migut.L01000' => 'egut', 'Migut.L01953' => 'egut', 'MSTRG.10253' => 'ama', 'MSTRG.19077' => 'ama', 'MSTRG.26780' => 'ama', 'MSTRG.4023' => 'ama', 'MSTRG.5655' => 'ama', 'MSTRG.9992' => 'ama', 'Nitab4.5_0000043g0310' => 'nta', 'Nitab4.5_0000463g0080' => 'nta', 'Nitab4.5_0000705g0170' => 'nta', 'Nitab4.5_0001326g0060' => 'nta', 'Nitab4.5_0001628g0030' => 'nta', 'Nitab4.5_0002103g0110' => 'nta', 'Nitab4.5_0002946g0030' => 'nta', 'Nitab4.5_0004639g0030' => 'nta', 'Nn2g11149' => 'nnu', 'Nn2g13389' => 'nnu', 'Nn4g25326' => 'nnu', 'Nn4g26290' => 'nnu', 'Nn5g29865' => 'nnu', 'Oeu004163.1' => 'oeu', 'Oeu006901.1' => 'oeu', 'Oeu010096.1' => 'oeu', 'Oeu024340.1' => 'oeu', 'Oeu048369.1' => 'oeu', 'Os01g0973000' => 'osa', 'Os03g0273800' => 'osa', 'Os03g0701200' => 'osa', 'Os03g0834050' => 'osa', 'Os07g0634400' => 'osa', 'Peaxi162Scf00092g01414' => 'pax', 'Peaxi162Scf00165g00818' => 'pax', 'Peaxi162Scf00309g00516' => 'pax', 'Peaxi162Scf00774g00218' => 'pax', 'PGR004G1824' => 'pgr', 'PGR004G2606' => 'pgr', 'PGR031G2716' => 'pgr', 'PGR102G2460' => 'pgr', 'PGR142G2599' => 'pgr', 'PGSC0003DMG400000843' => 'stu', 'PGSC0003DMG400008829' => 'stu', 'PGSC0003DMG400030418' => 'stu', 'PGSC0003DMG400031834' => 'stu', 'PGSC0003DMG401028300' => 'stu', 'PGSC0003DMG402028300' => 'stu', 'Phvul.001G219300' => 'pvu', 'Phvul.007G056000' => 'pvu', 'Phvul.007G208000' => 'pvu', 'Phvul.008G119500' => 'pvu', 'Phvul.010G011200' => 'pvu', 'Phvul.010G014800' => 'pvu', 'Phvul.011G062900' => 'pvu', 'Phvul.L007043' => 'pvu', 'Potri.001G242300' => 'ptr', 'Potri.002G185300' => 'ptr', 'Potri.006G086900' => 'ptr', 'Potri.008G151700' => 'ptr', 'Potri.009G033500' => 'ptr', 'Potri.010G089300' => 'ptr', 'Potri.014G110800' => 'ptr', 'Pp3c27_8130' => 'ppa', 'Pp3c6_27410' => 'ppa', 'PRCOL_00001659' => 'pco', 'PRCOL_00001927' => 'pco', 'PRCOL_00003649' => 'pco', 'Prupe.1G011600' => 'ppe', 'Prupe.3G000800' => 'ppe', 'Prupe.3G001100' => 'ppe', 'Prupe.6G072700' => 'ppe', 'Prupe.6G072800' => 'ppe', 'Prupe.6G257300' => 'ppe', 'Prupe.8G033000' => 'ppe', 'Psat0s2633g0080' => 'psa', 'Psat0s3396g0080' => 'psa', 'Psat0s3396g0200' => 'psa', 'Psat3g139080' => 'psa', 'Psat5g285080' => 'psa', 'Psat6g157760' => 'psa', 'Psat6g208440' => 'psa', 'Psat7g215320' => 'psa', 'Psat7g215400' => 'psa', 'Psat7g235600' => 'psa', 'Psat7g235760' => 'psa', 'PSO063G4603' => 'pso', 'PSO210G0182' => 'pso', 'PSO210G0196' => 'pso', 'PSO339G0394' => 'pso', 'PSO339G4127' => 'pso', 'PSO513G0064' => 'pso', 'PSO761G0079' => 'pso', 'QL01p031003' => 'qlo', 'QL01p031078' => 'qlo', 'QL06p003004' => 'qlo', 'QL07p048731' => 'qlo', 'QL09p037427' => 'qlo', 'RcHm_v2.0_Chr3g0466361' => 'rch', 'RcHm_v2.0_Chr3g0485571' => 'rch', 'RcHm_v2.0_Chr4g0416551' => 'rch', 'RcHm_v2.0_Chr5g0065831' => 'rch', 'Rhsim01G0230500' => 'rsi', 'Rhsim05G0194000' => 'rsi', 'Rhsim08G0250400' => 'rsi', 'Sabra02G0131000' => 'sbr', 'Sabra06G0066300' => 'sbr', 'Sabra08G0115500' => 'sbr', 'Sabra09G0023900' => 'sbr', 'Sabra10G0054000' => 'sbr', 'Sabra14G0081500' => 'sbr', 'Sabra16G0147100' => 'sbr', 'SalBow2G2957' => 'sbo', 'SalBow4G3320' => 'sbo', 'SalBow8G1894' => 'sbo', 'Sc07g0007950' => 'sci', 'Sc12g0001360' => 'sci', 'Sc13g0004330' => 'sci', 'Sc20g0005010' => 'sci', 'Sed0000361' => 'sed', 'Sed0001706' => 'sed', 'Sed0002422' => 'sed', 'Sed0004029' => 'sed', 'Sed0004602' => 'sed', 'Sed0004943' => 'sed', 'Sed0008646' => 'sed', 'Sed0023313' => 'sed', 'Sed0024843' => 'sed', 'SEGI_00081' => 'sgi', 'SEGI_00947' => 'sgi', 'SEGI_04046' => 'sgi', 'SEGI_06880' => 'sgi', 'SEGI_09736' => 'sgi', 'SEGI_12741' => 'sgi', 'SEGI_14530' => 'sgi', 'SEGI_20705' => 'sgi', 'SEGI_26088' => 'sgi', 'SEGI_28323' => 'sgi', 'SEGI_33343' => 'sgi', 'SGA_v2.0_scaffold126G33775' => 'sas', 'SGA_v2.0_scaffold2G01337' => 'sas', 'SGA_v2.0_scaffold38G15006' => 'sas', 'SGA_v2.0_scaffold39G15264' => 'sas', 'SGA_v2.0_scaffold453G51880' => 'sas', 'SHI12696' => 'shi', 'SMO367G1096' => 'smo', 'Solyc01g068630.3' => 'sly', 'Solyc05g011880.3' => 'sly', 'Solyc06g076300.3' => 'sly', 'Solyc09g010940.4' => 'sly', 'Solyc09g075890.3' => 'sly', 'Sopen01g030560' => 'spe', 'Sopen05g006630' => 'spe', 'Sopen06g032720' => 'spe', 'Sopen09g005660' => 'spe', 'Sopen09g030690' => 'spe', 'Sp4g14540' => 'spa', 'Sp4g20030' => 'spa', 'Sp5g01320' => 'spa', 'Sp6g21170' => 'spa', 'Sp6g21180' => 'spa', 'Sp6g21190' => 'spa', 'Sp6g40220' => 'spa', 'TAR362G0122' => 'tar', 'TAR362G1338' => 'tar', 'TAR369G0590' => 'tar', 'TAR371G0824' => 'tar', 'TAR622G1429' => 'tar', 'TAR623G0734' => 'tar', 'TAR625G0441' => 'tar', 'TAR629G0976' => 'tar', 'TAR633G1195' => 'tar', 'TAR636G2660' => 'tar', 'THA.LOC104799440' => 'tha', 'THA.LOC104800966' => 'tha', 'THA.LOC104806559' => 'tha', 'THA.LOC104810765' => 'tha', 'THA.LOC104816266' => 'tha', 'THA.LOC104817419' => 'tha', 'THA.LOC104827021' => 'tha', 'Thecc.01G327400' => 'tca', 'Thecc.04G229200' => 'tca', 'Thecc.05G037400' => 'tca', 'Thecc.09G318600' => 'tca', 'Thecc.09G318700' => 'tca', 'Thhalv10006238m.g' => 'esa', 'Thhalv10014321m.g' => 'esa', 'Thhalv10014335m.g' => 'esa', 'Thhalv10015826m.g' => 'esa', 'Thhalv10017107m.g' => 'esa', 'Thhalv10017180m.g' => 'esa', 'Thhalv10029339m.g' => 'esa', 'TPR.G1699' => 'tpr', 'TPR.G23609' => 'tpr', 'TPR.G3081' => 'tpr', 'TPR.G40397' => 'tpr', 'TPR.G5522' => 'tpr', 'TPR.G5618' => 'tpr', 'TPR.G5626' => 'tpr', 'TWI09G1632' => 'twi', 'TWI23G1230' => 'twi', 'TWI53G1064' => 'twi', 'TWI59G0751' => 'twi', 'TWI74G0947' => 'twi', 'TWI77G0337' => 'twi', 'TWI79G1254' => 'twi', 'unitig_0.g2341' => 'ugi', 'unitig_26.g10006' => 'ugi', 'unitig_26.g10008' => 'ugi', 'unitig_26.g9192' => 'ugi', 'vmacro14547' => 'vma', 'vmacro15333' => 'vma', 'vmacro18743' => 'vma', 'vmacro20166' => 'vma', 'VMungo0331G0523' => 'vmu', 'VMungo0331G1202' => 'vmu', 'VMungo0720G1228' => 'vmu', 'VMungo0720G1514' => 'vmu', 'VMungo1080G0169' => 'vmu', 'VMungo1127G1475' => 'vmu', 'VMungo1383G1208' => 'vmu', 'VMungo1383G1698' => 'vmu', 'Zm00001eb012270' => 'zma', 'Zm00001eb054100' => 'zma', 'Zm00001eb063350' => 'zma', 'Zm00001eb328560' => 'zma', 'Zm00001eb342820' => 'zma', 'Zm00001eb362210' => 'zma', 'Zm00001eb397730' => 'zma', 'Zm00001eb399750' => 'zma' ), 'gf_id' => 'HOM05D000959', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000959' ), 'data_identifier' => 'HOM05D000959', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000959', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '622', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p07100' => 'bna', 'A03p11720' => 'bna', 'A05p08300' => 'bna', 'A05p13380' => 'bna', 'A09p54130' => 'bna', 'A10p16690' => 'bna', 'A10p16700' => 'bna', 'A10p33390' => 'bna', 'Aa31LG10G16020' => 'aar', 'Aa31LG1G11810' => 'aar', 'Aa31LG1G11830' => 'aar', 'Aa31LG1G22510' => 'aar', 'Aa31LG5G4890' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5793' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2310' => 'aag', 'Actinidia08499' => 'ach', 'Actinidia11262' => 'ach', 'Actinidia23926' => 'ach', 'Actinidia34420' => 'ach', 'Actinidia36970' => 'ach', 'Ah.02g111220' => 'amhyb', 'Ah.15g097750' => 'amhyb', 'AL4G27500' => 'aly', 'AL6G11470' => 'aly', 'AL8G35950' => 'aly', 'AL8G35960' => 'aly', 'AL8G35970' => 'aly', 'Aqoxy1G00912' => 'aox', 'Aqoxy2G02253' => 'aox', 'Aqoxy2G02411' => 'aox', 'Aqoxy5G00485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BZ66YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K8ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM4FUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6BF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HFV7XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25JBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0YNNV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MAKK6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P70IT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP2Z6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V61LZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YWP64R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3S9AI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7PGHH' => 'arhy', 'AT2G32150' => 'ath', 'AT3G62040' => 'ath', 'AT5G02230' => 'ath', 'AT5G59480' => 'ath', 'AT5G59490' => 'ath', 'ATR0332G060' => 'atr', 'ATR0559G190' => 'atr', 'ATR0693G294' => 'atr', 'Atru.chr3.3975' => 'acertr', 'Atru.chr3.3976' => 'acertr', 'Atru.chr3.3977' => 'acertr', 'Atru.chr4.2498' => 'acertr', 'Atru.chr5.838' => 'acertr', 'Atru.chr8.1990' => 'acertr', 'Atru.chr8.1991' => 'acertr', 'Atru.chr8.1992' => 'acertr', 'AUR62001759' => 'cqu', 'AUR62009545' => 'cqu', 'AUR62010474' => 'cqu', 'AUR62025820' => 'cqu', 'AUR62030422' => 'cqu', 'AUR62033605' => 'cqu', 'AUR62038615' => 'cqu', 'AUR62041347' => 'cqu', 'BcaB01g04574' => 'bca', 'BcaB02g09263' => 'bca', 'BcaB02g10453' => 'bca', 'BcaB05g22513' => 'bca', 'BcaB08g36253' => 'bca', 'BcaB08g36254' => 'bca', 'BcaC01g06519' => 'bca', 'BcaC02g11889' => 'bca', 'BcaC03g14010' => 'bca', 'BcaC03g18439' => 'bca', 'BcaC04g19765' => 'bca', 'BcaC09g48432' => 'bca', 'BcaNung07302' => 'bca', 'BolC2t06040H' => 'bol', 'BolC2t07346H' => 'bol', 'BolC3t13817H' => 'bol', 'BolC4t22625H' => 'bol', 'BolC4t23297H' => 'bol', 'BolC8t51278H' => 'bol', 'BolC9t58050H' => 'bol', 'BolC9t58051H' => 'bol', 'BolC9t60163H' => 'bol', 'BraA02t04712Z' => 'bra', 'BraA02t05791Z' => 'bra', 'BraA03t10483Z' => 'bra', 'BraA05t19795Z' => 'bra', 'BraA05t20276Z' => 'bra', 'BraA09t40827Z' => 'bra', 'BraA10t43750Z' => 'bra', 'BraA10t43751Z' => 'bra', 'BraA10t45370Z' => 'bra', 'C02p00400' => 'bna', 'C02p12460' => 'bna', 'C03p13680' => 'bna', 'C04p10270' => 'bna', 'C04p17500' => 'bna', 'C08p37010' => 'bna', 'C09p51880' => 'bna', 'C09p51890' => 'bna', 'C09p74300' => 'bna', 'CAN.G179.26' => 'can', 'CAN.G3384.1' => 'can', 'CAN.G394.68' => 'can', 'CAN.G907.13' => 'can', 'CANSAT11G0012' => 'cansat', 'CANSAT25G1586' => 'cansat', 'CANSAT35G0735' => 'cansat', 'CANSAT54G0556' => 'cansat', 'CANSAT64G0356' => 'cansat', 'CANSAT78G2042' => 'cansat', 'CARHR125920' => 'chi', 'CARHR131910' => 'chi', 'CARHR172390' => 'chi', 'CARHR211140' => 'chi', 'CARHR285850' => 'chi', 'CARHR285860' => 'chi', 'Carub.0004s1347' => 'cru', 'Carub.0004s1960' => 'cru', 'Carub.0005s2880' => 'cru', 'Carub.0006s0107' => 'cru', 'Carub.0008s2015' => 'cru', 'Carub.0008s2016' => 'cru', 'Carub.0008s2017' => 'cru', 'Ca_01315_v3' => 'car', 'Ca_05063_v3' => 'car', 'Ca_10231_v3' => 'car', 'Ca_10913_v3' => 'car', 'Ca_19156_v3' => 'car', 'Ca_23644_v3' => 'car', 'Ca_26735_v3' => 'car', 'Cc01_g13130' => 'ccan', 'Cc02_g21690' => 'ccan', 'Cc03_g03600' => 'ccan', 'Cc06_g02510' => 'ccan', 'CDE02G1265' => 'cde', 'CDE05G0415' => 'cde', 'CDE08G1082' => 'cde', 'Cfa005780' => 'cfa', 'Cfa011522' => 'cfa', 'Cfa011523' => 'cfa', 'Cfa015627' => 'cfa', 'Cfa017359' => 'cfa', 'Ciclev10005687m.g' => 'ccl', 'Ciclev10012173m.g' => 'ccl', 'Ciclev10021621m.g' => 'ccl', 'Ciclev10028968m.g' => 'ccl', 'Ciclev10029907m.g' => 'ccl', 'CiPaw.01G164800' => 'cil', 'CiPaw.07G083700' => 'cil', 'CiPaw.07G127000' => 'cil', 'CiPaw.07G136900' => 'cil', 'CiPaw.08G081700' => 'cil', 'CiPaw.09G194600' => 'cil', 'CiPaw.10G146500' => 'cil', 'CiPaw.13G091500' => 'cil', 'CiPaw.13G091600' => 'cil', 'ClCG00G003390' => 'cla', 'ClCG01G007220' => 'cla', 'ClCG03G001370' => 'cla', 'ClCG04G008100' => 'cla', 'ClCG06G006110' => 'cla', 'ClCG06G006130' => 'cla', 'ClCG10G021210' => 'cla', 'COL.COLO4_07648' => 'col', 'COL.COLO4_07650' => 'col', 'COL.COLO4_07651' => 'col', 'COL.COLO4_14780' => 'col', 'COL.COLO4_18546' => 'col', 'COL.COLO4_18547' => 'col', 'COL.COLO4_23103' => 'col', 'COL.COLO4_30419' => 'col', 'COL.COLO4_34232' => 'col', 'Cpa.g.sc169.20' => 'cpa', 'Cpa.g.sc57.45' => 'cpa', 'Cpa.g.sc58.124' => 'cpa', 'Cpa.g.sc58.125' => 'cpa', 'Cpa.g.sc81.118' => 'cpa', 'Cpa.g.sc81.119' => 'cpa', 'Cre12.g524700' => 'cre', 'CsaV3_1G034430' => 'csa', 'CsaV3_1G034440' => 'csa', 'CsaV3_1G034450' => 'csa', 'CsaV3_3G034830' => 'csa', 'CsaV3_4G025090' => 'csa', 'CsaV3_5G018660' => 'csa', 'CsaV3_6G038160' => 'csa', 'CSS0003447' => 'camsi', 'CSS0017840' => 'camsi', 'CSS0019260' => 'camsi', 'CSS0040375' => 'camsi', 'CSS0042533' => 'camsi', 'DCAR_005960' => 'dca', 'DCAR_012104' => 'dca', 'DCAR_012105' => 'dca', 'DCAR_012293' => 'dca', 'DCAR_015632' => 'dca', 'DCAR_024602' => 'dca', 'DCAR_028752' => 'dca', 'Dinv06261' => 'din', 'Dinv13982' => 'din', 'Dinv17029' => 'din', 'Dinv18463' => 'din', 'Dinv33181' => 'din', 'Dinv35585' => 'din', 'Dinv37161' => 'din', 'Dinv42977' => 'din', 'Dinv43122' => 'din', 'Dinv44517' => 'din', 'Duzib093G0256' => 'dzi', 'Duzib106G1254' => 'dzi', 'Duzib128G1789' => 'dzi', 'Duzib133G0633' => 'dzi', 'Duzib138G0510' => 'dzi', 'Duzib150G1084' => 'dzi', 'Duzib168G0488' => 'dzi', 'Duzib168G1523' => 'dzi', 'Duzib170G0133' => 'dzi', 'ECA234G1433' => 'eca', 'ECA236G1432' => 'eca', 'ECA236G2256' => 'eca', 'ECA236G2365' => 'eca', 'ECA236G4830' => 'eca', 'ECA248G1505' => 'eca', 'EL10Ac3g06431' => 'bvu', 'EL10Ac5g12577' => 'bvu', 'EL10Ac6g13533' => 'bvu', 'EL10Ac7g16045' => 'bvu', 'Eucgr.A01281' => 'egr', 'Eucgr.B02326' => 'egr', 'Eucgr.H03532' => 'egr', 'Eucgr.K00553' => 'egr', 'Eucgr.K03116' => 'egr', 'FAN02G3963' => 'fan', 'FAN05G0438' => 'fan', 'FAN09G2434' => 'fan', 'FAN12G3984' => 'fan', 'FAN14G0798' => 'fan', 'FAN17G0652' => 'fan', 'FAN19G1988' => 'fan', 'FAN22G0632' => 'fan', 'FAN23G0387' => 'fan', 'FAN26G1323' => 'fan', 'FAN28G0666' => 'fan', 'FvH4_1g26080' => 'fve', 'FvH4_3g36780' => 'fve', 'FvH4_4g15270' => 'fve', 'FvH4_6g13490' => 'fve', 'Glyma.01G098700' => 'gma', 'Glyma.03G065900' => 'gma', 'Glyma.03G073754' => 'gma', 'Glyma.03G073758' => 'gma', 'Glyma.03G083200' => 'gma', 'Glyma.03G225500' => 'gma', 'Glyma.05G037766' => 'gma', 'Glyma.07G133500' => 'gma', 'Glyma.10G139400' => 'gma', 'Glyma.10G248900' => 'gma', 'Glyma.11G137800' => 'gma', 'Glyma.12G061300' => 'gma', 'Glyma.13G337900' => 'gma', 'Glyma.15G036600' => 'gma', 'Glyma.18G182800' => 'gma', 'Glyma.19G222500' => 'gma', 'Glyma.20G144800' => 'gma', 'Gohir.A01G222000' => 'ghi', 'Gohir.A03G044000' => 'ghi', 'Gohir.A03G044100' => 'ghi', 'Gohir.A04G083100' => 'ghi', 'Gohir.A07G127200' => 'ghi', 'Gohir.A07G132400' => 'ghi', 'Gohir.A08G000700' => 'ghi', 'Gohir.A11G327300' => 'ghi', 'Gohir.D01G211500' => 'ghi', 'Gohir.D03G123400' => 'ghi', 'Gohir.D03G123500' => 'ghi', 'Gohir.D04G121800' => 'ghi', 'Gohir.D07G131500' => 'ghi', 'Gohir.D07G136600' => 'ghi', 'Gohir.D08G011600' => 'ghi', 'Gohir.D11G346200' => 'ghi', 'Gorai.001G142800' => 'gra', 'Gorai.001G148700' => 'gra', 'Gorai.002G257300' => 'gra', 'Gorai.003G130000' => 'gra', 'Gorai.003G130100' => 'gra', 'Gorai.004G005300' => 'gra', 'Gorai.007G376500' => 'gra', 'Gorai.012G104700' => 'gra', 'GSVIVG01017946001' => 'vvi', 'GSVIVG01024928001' => 'vvi', 'GSVIVG01028227001' => 'vvi', 'GSVIVG01034151001' => 'vvi', 'HanXRQChr05g0135031' => 'han', 'HanXRQChr05g0135041' => 'han', 'HanXRQChr05g0140021' => 'han', 'HanXRQChr06g0178981' => 'han', 'HanXRQChr07g0188251' => 'han', 'HanXRQChr08g0235311' => 'han', 'HanXRQChr09g0271011' => 'han', 'HanXRQChr10g0293321' => 'han', 'HanXRQChr13g0388171' => 'han', 'Haze_00916' => 'cav', 'Haze_05063' => 'cav', 'Haze_20814' => 'cav', 'Haze_24128' => 'cav', 'Hma1.2p1_0745F.1_g212010' => 'hma', 'Hma1.2p1_0757F.1_g213260' => 'hma', 'Hma1.2p1_0936F.1_g238840' => 'hma', 'Hma1.2p1_1735F.1_g299890' => 'hma', 'Hma1.2p1_1861F.1_g305685' => 'hma', 'HPP92_003397' => 'vpl', 'HPP92_012597' => 'vpl', 'HPP92_015520' => 'vpl', 'HPP92_015539' => 'vpl', 'HPP92_020373' => 'vpl', 'Hund04938' => 'sun', 'Hund10677' => 'sun', 'Hund11033' => 'sun', 'Hund12155' => 'sun', 'Lalb_Chr01g0022551' => 'lal', 'Lalb_Chr03g0042341' => 'lal', 'Lalb_Chr07g0192931' => 'lal', 'Lalb_Chr12g0209551' => 'lal', 'Lalb_Chr19g0125251' => 'lal', 'Lalb_Chr19g0137891' => 'lal', 'Lalb_Chr21g0304641' => 'lal', 'Lalb_Chr21g0309881' => 'lal', 'Lj1A5T12' => 'lonja', 'Lj1C148G10' => 'lonja', 'Lj2A93T83' => 'lonja', 'Lj3A738G68' => 'lonja', 'Lj3C966T1' => 'lonja', 'Lj3g0018958' => 'lja', 'Lj3g0021831' => 'lja', 'Lj3g0025443' => 'lja', 'Lj4g0026809' => 'lja', 'Lj5g0012558' => 'lja', 'Lj5g0021586' => 'lja', 'Lsat_1_v5_gn_5_156840' => 'lsa', 'Lsat_1_v5_gn_8_73460' => 'lsa', 'Lsat_1_v5_gn_8_73481' => 'lsa', 'Lsat_1_v5_gn_9_31601' => 'lsa', 'Lsat_1_v5_gn_9_77320' => 'lsa', 'Manes.01G171300' => 'mes', 'Manes.01G171400' => 'mes', 'Manes.01G236100' => 'mes', 'Manes.02G130500' => 'mes', 'Manes.02G130600' => 'mes', 'Manes.03G180200' => 'mes', 'Manes.05G007000' => 'mes', 'Manes.08G084400' => 'mes', 'Manes.09G092600' => 'mes', 'Manes.15G027900' => 'mes', 'MBI04_g40948_MAGBIO' => 'mbi', 'MBI14_g12123_MAGBIO' => 'mbi', 'MBI18_g28915_MAGBIO' => 'mbi', 'MCO09G053' => 'mco', 'MCO11G782' => 'mco', 'MCO15G215' => 'mco', 'MD03G1088500' => 'mdo', 'MD03G1088600' => 'mdo', 'MD04G1130800' => 'mdo', 'MD09G1291700' => 'mdo', 'MD11G1097500' => 'mdo', 'MD11G1097600' => 'mdo', 'MD12G1143900' => 'mdo', 'MD13G1191400' => 'mdo', 'MD16G1191500' => 'mdo', 'Medtr1g085570' => 'mtr', 'Medtr1g104610' => 'mtr', 'Medtr2g097520' => 'mtr', 'Medtr4g021800' => 'mtr', 'Medtr4g021825' => 'mtr', 'Medtr4g064270' => 'mtr', 'Medtr4g064380' => 'mtr', 'Medtr7g062150' => 'mtr', 'MELO3C003138.2' => 'cme', 'MELO3C005187.2' => 'cme', 'MELO3C009252.2' => 'cme', 'MELO3C014481.2' => 'cme', 'MELO3C020616.2' => 'cme', 'MELO3C020617.2' => 'cme', 'MELO3C020618.2' => 'cme', 'Migut.G00328' => 'egut', 'Migut.J00320' => 'egut', 'Migut.L01000' => 'egut', 'Migut.L01953' => 'egut', 'MSTRG.10253' => 'ama', 'MSTRG.19077' => 'ama', 'MSTRG.26780' => 'ama', 'MSTRG.4023' => 'ama', 'MSTRG.5655' => 'ama', 'MSTRG.9992' => 'ama', 'Nitab4.5_0000043g0310' => 'nta', 'Nitab4.5_0000463g0080' => 'nta', 'Nitab4.5_0000705g0170' => 'nta', 'Nitab4.5_0001326g0060' => 'nta', 'Nitab4.5_0001628g0030' => 'nta', 'Nitab4.5_0002103g0110' => 'nta', 'Nitab4.5_0002946g0030' => 'nta', 'Nitab4.5_0004639g0030' => 'nta', 'Nn2g11149' => 'nnu', 'Nn2g13389' => 'nnu', 'Nn4g25326' => 'nnu', 'Nn4g26290' => 'nnu', 'Nn5g29865' => 'nnu', 'Oeu004163.1' => 'oeu', 'Oeu006901.1' => 'oeu', 'Oeu010096.1' => 'oeu', 'Oeu024340.1' => 'oeu', 'Oeu048369.1' => 'oeu', 'Os01g0973000' => 'osa', 'Os03g0273800' => 'osa', 'Os03g0701200' => 'osa', 'Os03g0834050' => 'osa', 'Os07g0634400' => 'osa', 'Peaxi162Scf00092g01414' => 'pax', 'Peaxi162Scf00165g00818' => 'pax', 'Peaxi162Scf00309g00516' => 'pax', 'Peaxi162Scf00774g00218' => 'pax', 'PGR004G1824' => 'pgr', 'PGR004G2606' => 'pgr', 'PGR031G2716' => 'pgr', 'PGR102G2460' => 'pgr', 'PGR142G2599' => 'pgr', 'PGSC0003DMG400000843' => 'stu', 'PGSC0003DMG400008829' => 'stu', 'PGSC0003DMG400030418' => 'stu', 'PGSC0003DMG400031834' => 'stu', 'PGSC0003DMG401028300' => 'stu', 'PGSC0003DMG402028300' => 'stu', 'Phvul.001G219300' => 'pvu', 'Phvul.007G056000' => 'pvu', 'Phvul.007G208000' => 'pvu', 'Phvul.008G119500' => 'pvu', 'Phvul.010G011200' => 'pvu', 'Phvul.010G014800' => 'pvu', 'Phvul.011G062900' => 'pvu', 'Phvul.L007043' => 'pvu', 'Potri.001G242300' => 'ptr', 'Potri.002G185300' => 'ptr', 'Potri.006G086900' => 'ptr', 'Potri.008G151700' => 'ptr', 'Potri.009G033500' => 'ptr', 'Potri.010G089300' => 'ptr', 'Potri.014G110800' => 'ptr', 'Pp3c27_8130' => 'ppa', 'Pp3c6_27410' => 'ppa', 'PRCOL_00001659' => 'pco', 'PRCOL_00001927' => 'pco', 'PRCOL_00003649' => 'pco', 'Prupe.1G011600' => 'ppe', 'Prupe.3G000800' => 'ppe', 'Prupe.3G001100' => 'ppe', 'Prupe.6G072700' => 'ppe', 'Prupe.6G072800' => 'ppe', 'Prupe.6G257300' => 'ppe', 'Prupe.8G033000' => 'ppe', 'Psat0s2633g0080' => 'psa', 'Psat0s3396g0080' => 'psa', 'Psat0s3396g0200' => 'psa', 'Psat3g139080' => 'psa', 'Psat5g285080' => 'psa', 'Psat6g157760' => 'psa', 'Psat6g208440' => 'psa', 'Psat7g215320' => 'psa', 'Psat7g215400' => 'psa', 'Psat7g235600' => 'psa', 'Psat7g235760' => 'psa', 'PSO063G4603' => 'pso', 'PSO210G0182' => 'pso', 'PSO210G0196' => 'pso', 'PSO339G0394' => 'pso', 'PSO339G4127' => 'pso', 'PSO513G0064' => 'pso', 'PSO761G0079' => 'pso', 'QL01p031003' => 'qlo', 'QL01p031078' => 'qlo', 'QL06p003004' => 'qlo', 'QL07p048731' => 'qlo', 'QL09p037427' => 'qlo', 'RcHm_v2.0_Chr3g0466361' => 'rch', 'RcHm_v2.0_Chr3g0485571' => 'rch', 'RcHm_v2.0_Chr4g0416551' => 'rch', 'RcHm_v2.0_Chr5g0065831' => 'rch', 'Rhsim01G0230500' => 'rsi', 'Rhsim05G0194000' => 'rsi', 'Rhsim08G0250400' => 'rsi', 'Sabra02G0131000' => 'sbr', 'Sabra06G0066300' => 'sbr', 'Sabra08G0115500' => 'sbr', 'Sabra09G0023900' => 'sbr', 'Sabra10G0054000' => 'sbr', 'Sabra14G0081500' => 'sbr', 'Sabra16G0147100' => 'sbr', 'SalBow2G2957' => 'sbo', 'SalBow4G3320' => 'sbo', 'SalBow8G1894' => 'sbo', 'Sc07g0007950' => 'sci', 'Sc12g0001360' => 'sci', 'Sc13g0004330' => 'sci', 'Sc20g0005010' => 'sci', 'Sed0000361' => 'sed', 'Sed0001706' => 'sed', 'Sed0002422' => 'sed', 'Sed0004029' => 'sed', 'Sed0004602' => 'sed', 'Sed0004943' => 'sed', 'Sed0008646' => 'sed', 'Sed0023313' => 'sed', 'Sed0024843' => 'sed', 'SEGI_00081' => 'sgi', 'SEGI_00947' => 'sgi', 'SEGI_04046' => 'sgi', 'SEGI_06880' => 'sgi', 'SEGI_09736' => 'sgi', 'SEGI_12741' => 'sgi', 'SEGI_14530' => 'sgi', 'SEGI_20705' => 'sgi', 'SEGI_26088' => 'sgi', 'SEGI_28323' => 'sgi', 'SEGI_33343' => 'sgi', 'SGA_v2.0_scaffold126G33775' => 'sas', 'SGA_v2.0_scaffold2G01337' => 'sas', 'SGA_v2.0_scaffold38G15006' => 'sas', 'SGA_v2.0_scaffold39G15264' => 'sas', 'SGA_v2.0_scaffold453G51880' => 'sas', 'SHI12696' => 'shi', 'SMO367G1096' => 'smo', 'Solyc01g068630.3' => 'sly', 'Solyc05g011880.3' => 'sly', 'Solyc06g076300.3' => 'sly', 'Solyc09g010940.4' => 'sly', 'Solyc09g075890.3' => 'sly', 'Sopen01g030560' => 'spe', 'Sopen05g006630' => 'spe', 'Sopen06g032720' => 'spe', 'Sopen09g005660' => 'spe', 'Sopen09g030690' => 'spe', 'Sp4g14540' => 'spa', 'Sp4g20030' => 'spa', 'Sp5g01320' => 'spa', 'Sp6g21170' => 'spa', 'Sp6g21180' => 'spa', 'Sp6g21190' => 'spa', 'Sp6g40220' => 'spa', 'TAR362G0122' => 'tar', 'TAR362G1338' => 'tar', 'TAR369G0590' => 'tar', 'TAR371G0824' => 'tar', 'TAR622G1429' => 'tar', 'TAR623G0734' => 'tar', 'TAR625G0441' => 'tar', 'TAR629G0976' => 'tar', 'TAR633G1195' => 'tar', 'TAR636G2660' => 'tar', 'THA.LOC104799440' => 'tha', 'THA.LOC104800966' => 'tha', 'THA.LOC104806559' => 'tha', 'THA.LOC104810765' => 'tha', 'THA.LOC104816266' => 'tha', 'THA.LOC104817419' => 'tha', 'THA.LOC104827021' => 'tha', 'Thecc.01G327400' => 'tca', 'Thecc.04G229200' => 'tca', 'Thecc.05G037400' => 'tca', 'Thecc.09G318600' => 'tca', 'Thecc.09G318700' => 'tca', 'Thhalv10006238m.g' => 'esa', 'Thhalv10014321m.g' => 'esa', 'Thhalv10014335m.g' => 'esa', 'Thhalv10015826m.g' => 'esa', 'Thhalv10017107m.g' => 'esa', 'Thhalv10017180m.g' => 'esa', 'Thhalv10029339m.g' => 'esa', 'TPR.G1699' => 'tpr', 'TPR.G23609' => 'tpr', 'TPR.G3081' => 'tpr', 'TPR.G40397' => 'tpr', 'TPR.G5522' => 'tpr', 'TPR.G5618' => 'tpr', 'TPR.G5626' => 'tpr', 'TWI09G1632' => 'twi', 'TWI23G1230' => 'twi', 'TWI53G1064' => 'twi', 'TWI59G0751' => 'twi', 'TWI74G0947' => 'twi', 'TWI77G0337' => 'twi', 'TWI79G1254' => 'twi', 'unitig_0.g2341' => 'ugi', 'unitig_26.g10006' => 'ugi', 'unitig_26.g10008' => 'ugi', 'unitig_26.g9192' => 'ugi', 'vmacro14547' => 'vma', 'vmacro15333' => 'vma', 'vmacro18743' => 'vma', 'vmacro20166' => 'vma', 'VMungo0331G0523' => 'vmu', 'VMungo0331G1202' => 'vmu', 'VMungo0720G1228' => 'vmu', 'VMungo0720G1514' => 'vmu', 'VMungo1080G0169' => 'vmu', 'VMungo1127G1475' => 'vmu', 'VMungo1383G1208' => 'vmu', 'VMungo1383G1698' => 'vmu', 'Zm00001eb012270' => 'zma', 'Zm00001eb054100' => 'zma', 'Zm00001eb063350' => 'zma', 'Zm00001eb328560' => 'zma', 'Zm00001eb342820' => 'zma', 'Zm00001eb362210' => 'zma', 'Zm00001eb397730' => 'zma', 'Zm00001eb399750' => 'zma' ) $gf_id = 'HOM05D000959' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000959' ) $data_identifier = 'HOM05D000959' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 5, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 5, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 10, 'mbi' => (int) 3, 'mco' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 2, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 3, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 11, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399750' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000959', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '622', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p07100' => 'bna', 'A03p11720' => 'bna', 'A05p08300' => 'bna', 'A05p13380' => 'bna', 'A09p54130' => 'bna', 'A10p16690' => 'bna', 'A10p16700' => 'bna', 'A10p33390' => 'bna', 'Aa31LG10G16020' => 'aar', 'Aa31LG1G11810' => 'aar', 'Aa31LG1G11830' => 'aar', 'Aa31LG1G22510' => 'aar', 'Aa31LG5G4890' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5793' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2310' => 'aag', 'Actinidia08499' => 'ach', 'Actinidia11262' => 'ach', 'Actinidia23926' => 'ach', 'Actinidia34420' => 'ach', 'Actinidia36970' => 'ach', 'Ah.02g111220' => 'amhyb', 'Ah.15g097750' => 'amhyb', 'AL4G27500' => 'aly', 'AL6G11470' => 'aly', 'AL8G35950' => 'aly', 'AL8G35960' => 'aly', 'AL8G35970' => 'aly', 'Aqoxy1G00912' => 'aox', 'Aqoxy2G02253' => 'aox', 'Aqoxy2G02411' => 'aox', 'Aqoxy5G00485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BZ66YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K8ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM4FUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6BF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HFV7XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25JBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0YNNV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MAKK6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P70IT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP2Z6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V61LZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YWP64R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3S9AI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7PGHH' => 'arhy', 'AT2G32150' => 'ath', 'AT3G62040' => 'ath', 'AT5G02230' => 'ath', 'AT5G59480' => 'ath', 'AT5G59490' => 'ath', 'ATR0332G060' => 'atr', 'ATR0559G190' => 'atr', 'ATR0693G294' => 'atr', 'Atru.chr3.3975' => 'acertr', 'Atru.chr3.3976' => 'acertr', 'Atru.chr3.3977' => 'acertr', 'Atru.chr4.2498' => 'acertr', 'Atru.chr5.838' => 'acertr', 'Atru.chr8.1990' => 'acertr', 'Atru.chr8.1991' => 'acertr', 'Atru.chr8.1992' => 'acertr', 'AUR62001759' => 'cqu', 'AUR62009545' => 'cqu', 'AUR62010474' => 'cqu', 'AUR62025820' => 'cqu', 'AUR62030422' => 'cqu', 'AUR62033605' => 'cqu', 'AUR62038615' => 'cqu', 'AUR62041347' => 'cqu', 'BcaB01g04574' => 'bca', 'BcaB02g09263' => 'bca', 'BcaB02g10453' => 'bca', 'BcaB05g22513' => 'bca', 'BcaB08g36253' => 'bca', 'BcaB08g36254' => 'bca', 'BcaC01g06519' => 'bca', 'BcaC02g11889' => 'bca', 'BcaC03g14010' => 'bca', 'BcaC03g18439' => 'bca', 'BcaC04g19765' => 'bca', 'BcaC09g48432' => 'bca', 'BcaNung07302' => 'bca', 'BolC2t06040H' => 'bol', 'BolC2t07346H' => 'bol', 'BolC3t13817H' => 'bol', 'BolC4t22625H' => 'bol', 'BolC4t23297H' => 'bol', 'BolC8t51278H' => 'bol', 'BolC9t58050H' => 'bol', 'BolC9t58051H' => 'bol', 'BolC9t60163H' => 'bol', 'BraA02t04712Z' => 'bra', 'BraA02t05791Z' => 'bra', 'BraA03t10483Z' => 'bra', 'BraA05t19795Z' => 'bra', 'BraA05t20276Z' => 'bra', 'BraA09t40827Z' => 'bra', 'BraA10t43750Z' => 'bra', 'BraA10t43751Z' => 'bra', 'BraA10t45370Z' => 'bra', 'C02p00400' => 'bna', 'C02p12460' => 'bna', 'C03p13680' => 'bna', 'C04p10270' => 'bna', 'C04p17500' => 'bna', 'C08p37010' => 'bna', 'C09p51880' => 'bna', 'C09p51890' => 'bna', 'C09p74300' => 'bna', 'CAN.G179.26' => 'can', 'CAN.G3384.1' => 'can', 'CAN.G394.68' => 'can', 'CAN.G907.13' => 'can', 'CANSAT11G0012' => 'cansat', 'CANSAT25G1586' => 'cansat', 'CANSAT35G0735' => 'cansat', 'CANSAT54G0556' => 'cansat', 'CANSAT64G0356' => 'cansat', 'CANSAT78G2042' => 'cansat', 'CARHR125920' => 'chi', 'CARHR131910' => 'chi', 'CARHR172390' => 'chi', 'CARHR211140' => 'chi', 'CARHR285850' => 'chi', 'CARHR285860' => 'chi', 'Carub.0004s1347' => 'cru', 'Carub.0004s1960' => 'cru', 'Carub.0005s2880' => 'cru', 'Carub.0006s0107' => 'cru', 'Carub.0008s2015' => 'cru', 'Carub.0008s2016' => 'cru', 'Carub.0008s2017' => 'cru', 'Ca_01315_v3' => 'car', 'Ca_05063_v3' => 'car', 'Ca_10231_v3' => 'car', 'Ca_10913_v3' => 'car', 'Ca_19156_v3' => 'car', 'Ca_23644_v3' => 'car', 'Ca_26735_v3' => 'car', 'Cc01_g13130' => 'ccan', 'Cc02_g21690' => 'ccan', 'Cc03_g03600' => 'ccan', 'Cc06_g02510' => 'ccan', 'CDE02G1265' => 'cde', 'CDE05G0415' => 'cde', 'CDE08G1082' => 'cde', 'Cfa005780' => 'cfa', 'Cfa011522' => 'cfa', 'Cfa011523' => 'cfa', 'Cfa015627' => 'cfa', 'Cfa017359' => 'cfa', 'Ciclev10005687m.g' => 'ccl', 'Ciclev10012173m.g' => 'ccl', 'Ciclev10021621m.g' => 'ccl', 'Ciclev10028968m.g' => 'ccl', 'Ciclev10029907m.g' => 'ccl', 'CiPaw.01G164800' => 'cil', 'CiPaw.07G083700' => 'cil', 'CiPaw.07G127000' => 'cil', 'CiPaw.07G136900' => 'cil', 'CiPaw.08G081700' => 'cil', 'CiPaw.09G194600' => 'cil', 'CiPaw.10G146500' => 'cil', 'CiPaw.13G091500' => 'cil', 'CiPaw.13G091600' => 'cil', 'ClCG00G003390' => 'cla', 'ClCG01G007220' => 'cla', 'ClCG03G001370' => 'cla', 'ClCG04G008100' => 'cla', 'ClCG06G006110' => 'cla', 'ClCG06G006130' => 'cla', 'ClCG10G021210' => 'cla', 'COL.COLO4_07648' => 'col', 'COL.COLO4_07650' => 'col', 'COL.COLO4_07651' => 'col', 'COL.COLO4_14780' => 'col', 'COL.COLO4_18546' => 'col', 'COL.COLO4_18547' => 'col', 'COL.COLO4_23103' => 'col', 'COL.COLO4_30419' => 'col', 'COL.COLO4_34232' => 'col', 'Cpa.g.sc169.20' => 'cpa', 'Cpa.g.sc57.45' => 'cpa', 'Cpa.g.sc58.124' => 'cpa', 'Cpa.g.sc58.125' => 'cpa', 'Cpa.g.sc81.118' => 'cpa', 'Cpa.g.sc81.119' => 'cpa', 'Cre12.g524700' => 'cre', 'CsaV3_1G034430' => 'csa', 'CsaV3_1G034440' => 'csa', 'CsaV3_1G034450' => 'csa', 'CsaV3_3G034830' => 'csa', 'CsaV3_4G025090' => 'csa', 'CsaV3_5G018660' => 'csa', 'CsaV3_6G038160' => 'csa', 'CSS0003447' => 'camsi', 'CSS0017840' => 'camsi', 'CSS0019260' => 'camsi', 'CSS0040375' => 'camsi', 'CSS0042533' => 'camsi', 'DCAR_005960' => 'dca', 'DCAR_012104' => 'dca', 'DCAR_012105' => 'dca', 'DCAR_012293' => 'dca', 'DCAR_015632' => 'dca', 'DCAR_024602' => 'dca', 'DCAR_028752' => 'dca', 'Dinv06261' => 'din', 'Dinv13982' => 'din', 'Dinv17029' => 'din', 'Dinv18463' => 'din', 'Dinv33181' => 'din', 'Dinv35585' => 'din', 'Dinv37161' => 'din', 'Dinv42977' => 'din', 'Dinv43122' => 'din', 'Dinv44517' => 'din', 'Duzib093G0256' => 'dzi', 'Duzib106G1254' => 'dzi', 'Duzib128G1789' => 'dzi', 'Duzib133G0633' => 'dzi', 'Duzib138G0510' => 'dzi', 'Duzib150G1084' => 'dzi', 'Duzib168G0488' => 'dzi', 'Duzib168G1523' => 'dzi', 'Duzib170G0133' => 'dzi', 'ECA234G1433' => 'eca', 'ECA236G1432' => 'eca', 'ECA236G2256' => 'eca', 'ECA236G2365' => 'eca', 'ECA236G4830' => 'eca', 'ECA248G1505' => 'eca', 'EL10Ac3g06431' => 'bvu', 'EL10Ac5g12577' => 'bvu', 'EL10Ac6g13533' => 'bvu', 'EL10Ac7g16045' => 'bvu', 'Eucgr.A01281' => 'egr', 'Eucgr.B02326' => 'egr', 'Eucgr.H03532' => 'egr', 'Eucgr.K00553' => 'egr', 'Eucgr.K03116' => 'egr', 'FAN02G3963' => 'fan', 'FAN05G0438' => 'fan', 'FAN09G2434' => 'fan', 'FAN12G3984' => 'fan', 'FAN14G0798' => 'fan', 'FAN17G0652' => 'fan', 'FAN19G1988' => 'fan', 'FAN22G0632' => 'fan', 'FAN23G0387' => 'fan', 'FAN26G1323' => 'fan', 'FAN28G0666' => 'fan', 'FvH4_1g26080' => 'fve', 'FvH4_3g36780' => 'fve', 'FvH4_4g15270' => 'fve', 'FvH4_6g13490' => 'fve', 'Glyma.01G098700' => 'gma', 'Glyma.03G065900' => 'gma', 'Glyma.03G073754' => 'gma', 'Glyma.03G073758' => 'gma', 'Glyma.03G083200' => 'gma', 'Glyma.03G225500' => 'gma', 'Glyma.05G037766' => 'gma', 'Glyma.07G133500' => 'gma', 'Glyma.10G139400' => 'gma', 'Glyma.10G248900' => 'gma', 'Glyma.11G137800' => 'gma', 'Glyma.12G061300' => 'gma', 'Glyma.13G337900' => 'gma', 'Glyma.15G036600' => 'gma', 'Glyma.18G182800' => 'gma', 'Glyma.19G222500' => 'gma', 'Glyma.20G144800' => 'gma', 'Gohir.A01G222000' => 'ghi', 'Gohir.A03G044000' => 'ghi', 'Gohir.A03G044100' => 'ghi', 'Gohir.A04G083100' => 'ghi', 'Gohir.A07G127200' => 'ghi', 'Gohir.A07G132400' => 'ghi', 'Gohir.A08G000700' => 'ghi', 'Gohir.A11G327300' => 'ghi', 'Gohir.D01G211500' => 'ghi', 'Gohir.D03G123400' => 'ghi', 'Gohir.D03G123500' => 'ghi', 'Gohir.D04G121800' => 'ghi', 'Gohir.D07G131500' => 'ghi', 'Gohir.D07G136600' => 'ghi', 'Gohir.D08G011600' => 'ghi', 'Gohir.D11G346200' => 'ghi', 'Gorai.001G142800' => 'gra', 'Gorai.001G148700' => 'gra', 'Gorai.002G257300' => 'gra', 'Gorai.003G130000' => 'gra', 'Gorai.003G130100' => 'gra', 'Gorai.004G005300' => 'gra', 'Gorai.007G376500' => 'gra', 'Gorai.012G104700' => 'gra', 'GSVIVG01017946001' => 'vvi', 'GSVIVG01024928001' => 'vvi', 'GSVIVG01028227001' => 'vvi', 'GSVIVG01034151001' => 'vvi', 'HanXRQChr05g0135031' => 'han', 'HanXRQChr05g0135041' => 'han', 'HanXRQChr05g0140021' => 'han', 'HanXRQChr06g0178981' => 'han', 'HanXRQChr07g0188251' => 'han', 'HanXRQChr08g0235311' => 'han', 'HanXRQChr09g0271011' => 'han', 'HanXRQChr10g0293321' => 'han', 'HanXRQChr13g0388171' => 'han', 'Haze_00916' => 'cav', 'Haze_05063' => 'cav', 'Haze_20814' => 'cav', 'Haze_24128' => 'cav', 'Hma1.2p1_0745F.1_g212010' => 'hma', 'Hma1.2p1_0757F.1_g213260' => 'hma', 'Hma1.2p1_0936F.1_g238840' => 'hma', 'Hma1.2p1_1735F.1_g299890' => 'hma', 'Hma1.2p1_1861F.1_g305685' => 'hma', 'HPP92_003397' => 'vpl', 'HPP92_012597' => 'vpl', 'HPP92_015520' => 'vpl', 'HPP92_015539' => 'vpl', 'HPP92_020373' => 'vpl', 'Hund04938' => 'sun', 'Hund10677' => 'sun', 'Hund11033' => 'sun', 'Hund12155' => 'sun', 'Lalb_Chr01g0022551' => 'lal', 'Lalb_Chr03g0042341' => 'lal', 'Lalb_Chr07g0192931' => 'lal', 'Lalb_Chr12g0209551' => 'lal', 'Lalb_Chr19g0125251' => 'lal', 'Lalb_Chr19g0137891' => 'lal', 'Lalb_Chr21g0304641' => 'lal', 'Lalb_Chr21g0309881' => 'lal', 'Lj1A5T12' => 'lonja', 'Lj1C148G10' => 'lonja', 'Lj2A93T83' => 'lonja', 'Lj3A738G68' => 'lonja', 'Lj3C966T1' => 'lonja', 'Lj3g0018958' => 'lja', 'Lj3g0021831' => 'lja', 'Lj3g0025443' => 'lja', 'Lj4g0026809' => 'lja', 'Lj5g0012558' => 'lja', 'Lj5g0021586' => 'lja', 'Lsat_1_v5_gn_5_156840' => 'lsa', 'Lsat_1_v5_gn_8_73460' => 'lsa', 'Lsat_1_v5_gn_8_73481' => 'lsa', 'Lsat_1_v5_gn_9_31601' => 'lsa', 'Lsat_1_v5_gn_9_77320' => 'lsa', 'Manes.01G171300' => 'mes', 'Manes.01G171400' => 'mes', 'Manes.01G236100' => 'mes', 'Manes.02G130500' => 'mes', 'Manes.02G130600' => 'mes', 'Manes.03G180200' => 'mes', 'Manes.05G007000' => 'mes', 'Manes.08G084400' => 'mes', 'Manes.09G092600' => 'mes', 'Manes.15G027900' => 'mes', 'MBI04_g40948_MAGBIO' => 'mbi', 'MBI14_g12123_MAGBIO' => 'mbi', 'MBI18_g28915_MAGBIO' => 'mbi', 'MCO09G053' => 'mco', 'MCO11G782' => 'mco', 'MCO15G215' => 'mco', 'MD03G1088500' => 'mdo', 'MD03G1088600' => 'mdo', 'MD04G1130800' => 'mdo', 'MD09G1291700' => 'mdo', 'MD11G1097500' => 'mdo', 'MD11G1097600' => 'mdo', 'MD12G1143900' => 'mdo', 'MD13G1191400' => 'mdo', 'MD16G1191500' => 'mdo', 'Medtr1g085570' => 'mtr', 'Medtr1g104610' => 'mtr', 'Medtr2g097520' => 'mtr', 'Medtr4g021800' => 'mtr', 'Medtr4g021825' => 'mtr', 'Medtr4g064270' => 'mtr', 'Medtr4g064380' => 'mtr', 'Medtr7g062150' => 'mtr', 'MELO3C003138.2' => 'cme', 'MELO3C005187.2' => 'cme', 'MELO3C009252.2' => 'cme', 'MELO3C014481.2' => 'cme', 'MELO3C020616.2' => 'cme', 'MELO3C020617.2' => 'cme', 'MELO3C020618.2' => 'cme', 'Migut.G00328' => 'egut', 'Migut.J00320' => 'egut', 'Migut.L01000' => 'egut', 'Migut.L01953' => 'egut', 'MSTRG.10253' => 'ama', 'MSTRG.19077' => 'ama', 'MSTRG.26780' => 'ama', 'MSTRG.4023' => 'ama', 'MSTRG.5655' => 'ama', 'MSTRG.9992' => 'ama', 'Nitab4.5_0000043g0310' => 'nta', 'Nitab4.5_0000463g0080' => 'nta', 'Nitab4.5_0000705g0170' => 'nta', 'Nitab4.5_0001326g0060' => 'nta', 'Nitab4.5_0001628g0030' => 'nta', 'Nitab4.5_0002103g0110' => 'nta', 'Nitab4.5_0002946g0030' => 'nta', 'Nitab4.5_0004639g0030' => 'nta', 'Nn2g11149' => 'nnu', 'Nn2g13389' => 'nnu', 'Nn4g25326' => 'nnu', 'Nn4g26290' => 'nnu', 'Nn5g29865' => 'nnu', 'Oeu004163.1' => 'oeu', 'Oeu006901.1' => 'oeu', 'Oeu010096.1' => 'oeu', 'Oeu024340.1' => 'oeu', 'Oeu048369.1' => 'oeu', 'Os01g0973000' => 'osa', 'Os03g0273800' => 'osa', 'Os03g0701200' => 'osa', 'Os03g0834050' => 'osa', 'Os07g0634400' => 'osa', 'Peaxi162Scf00092g01414' => 'pax', 'Peaxi162Scf00165g00818' => 'pax', 'Peaxi162Scf00309g00516' => 'pax', 'Peaxi162Scf00774g00218' => 'pax', 'PGR004G1824' => 'pgr', 'PGR004G2606' => 'pgr', 'PGR031G2716' => 'pgr', 'PGR102G2460' => 'pgr', 'PGR142G2599' => 'pgr', 'PGSC0003DMG400000843' => 'stu', 'PGSC0003DMG400008829' => 'stu', 'PGSC0003DMG400030418' => 'stu', 'PGSC0003DMG400031834' => 'stu', 'PGSC0003DMG401028300' => 'stu', 'PGSC0003DMG402028300' => 'stu', 'Phvul.001G219300' => 'pvu', 'Phvul.007G056000' => 'pvu', 'Phvul.007G208000' => 'pvu', 'Phvul.008G119500' => 'pvu', 'Phvul.010G011200' => 'pvu', 'Phvul.010G014800' => 'pvu', 'Phvul.011G062900' => 'pvu', 'Phvul.L007043' => 'pvu', 'Potri.001G242300' => 'ptr', 'Potri.002G185300' => 'ptr', 'Potri.006G086900' => 'ptr', 'Potri.008G151700' => 'ptr', 'Potri.009G033500' => 'ptr', 'Potri.010G089300' => 'ptr', 'Potri.014G110800' => 'ptr', 'Pp3c27_8130' => 'ppa', 'Pp3c6_27410' => 'ppa', 'PRCOL_00001659' => 'pco', 'PRCOL_00001927' => 'pco', 'PRCOL_00003649' => 'pco', 'Prupe.1G011600' => 'ppe', 'Prupe.3G000800' => 'ppe', 'Prupe.3G001100' => 'ppe', 'Prupe.6G072700' => 'ppe', 'Prupe.6G072800' => 'ppe', 'Prupe.6G257300' => 'ppe', 'Prupe.8G033000' => 'ppe', 'Psat0s2633g0080' => 'psa', 'Psat0s3396g0080' => 'psa', 'Psat0s3396g0200' => 'psa', 'Psat3g139080' => 'psa', 'Psat5g285080' => 'psa', 'Psat6g157760' => 'psa', 'Psat6g208440' => 'psa', 'Psat7g215320' => 'psa', 'Psat7g215400' => 'psa', 'Psat7g235600' => 'psa', 'Psat7g235760' => 'psa', 'PSO063G4603' => 'pso', 'PSO210G0182' => 'pso', 'PSO210G0196' => 'pso', 'PSO339G0394' => 'pso', 'PSO339G4127' => 'pso', 'PSO513G0064' => 'pso', 'PSO761G0079' => 'pso', 'QL01p031003' => 'qlo', 'QL01p031078' => 'qlo', 'QL06p003004' => 'qlo', 'QL07p048731' => 'qlo', 'QL09p037427' => 'qlo', 'RcHm_v2.0_Chr3g0466361' => 'rch', 'RcHm_v2.0_Chr3g0485571' => 'rch', 'RcHm_v2.0_Chr4g0416551' => 'rch', 'RcHm_v2.0_Chr5g0065831' => 'rch', 'Rhsim01G0230500' => 'rsi', 'Rhsim05G0194000' => 'rsi', 'Rhsim08G0250400' => 'rsi', 'Sabra02G0131000' => 'sbr', 'Sabra06G0066300' => 'sbr', 'Sabra08G0115500' => 'sbr', 'Sabra09G0023900' => 'sbr', 'Sabra10G0054000' => 'sbr', 'Sabra14G0081500' => 'sbr', 'Sabra16G0147100' => 'sbr', 'SalBow2G2957' => 'sbo', 'SalBow4G3320' => 'sbo', 'SalBow8G1894' => 'sbo', 'Sc07g0007950' => 'sci', 'Sc12g0001360' => 'sci', 'Sc13g0004330' => 'sci', 'Sc20g0005010' => 'sci', 'Sed0000361' => 'sed', 'Sed0001706' => 'sed', 'Sed0002422' => 'sed', 'Sed0004029' => 'sed', 'Sed0004602' => 'sed', 'Sed0004943' => 'sed', 'Sed0008646' => 'sed', 'Sed0023313' => 'sed', 'Sed0024843' => 'sed', 'SEGI_00081' => 'sgi', 'SEGI_00947' => 'sgi', 'SEGI_04046' => 'sgi', 'SEGI_06880' => 'sgi', 'SEGI_09736' => 'sgi', 'SEGI_12741' => 'sgi', 'SEGI_14530' => 'sgi', 'SEGI_20705' => 'sgi', 'SEGI_26088' => 'sgi', 'SEGI_28323' => 'sgi', 'SEGI_33343' => 'sgi', 'SGA_v2.0_scaffold126G33775' => 'sas', 'SGA_v2.0_scaffold2G01337' => 'sas', 'SGA_v2.0_scaffold38G15006' => 'sas', 'SGA_v2.0_scaffold39G15264' => 'sas', 'SGA_v2.0_scaffold453G51880' => 'sas', 'SHI12696' => 'shi', 'SMO367G1096' => 'smo', 'Solyc01g068630.3' => 'sly', 'Solyc05g011880.3' => 'sly', 'Solyc06g076300.3' => 'sly', 'Solyc09g010940.4' => 'sly', 'Solyc09g075890.3' => 'sly', 'Sopen01g030560' => 'spe', 'Sopen05g006630' => 'spe', 'Sopen06g032720' => 'spe', 'Sopen09g005660' => 'spe', 'Sopen09g030690' => 'spe', 'Sp4g14540' => 'spa', 'Sp4g20030' => 'spa', 'Sp5g01320' => 'spa', 'Sp6g21170' => 'spa', 'Sp6g21180' => 'spa', 'Sp6g21190' => 'spa', 'Sp6g40220' => 'spa', 'TAR362G0122' => 'tar', 'TAR362G1338' => 'tar', 'TAR369G0590' => 'tar', 'TAR371G0824' => 'tar', 'TAR622G1429' => 'tar', 'TAR623G0734' => 'tar', 'TAR625G0441' => 'tar', 'TAR629G0976' => 'tar', 'TAR633G1195' => 'tar', 'TAR636G2660' => 'tar', 'THA.LOC104799440' => 'tha', 'THA.LOC104800966' => 'tha', 'THA.LOC104806559' => 'tha', 'THA.LOC104810765' => 'tha', 'THA.LOC104816266' => 'tha', 'THA.LOC104817419' => 'tha', 'THA.LOC104827021' => 'tha', 'Thecc.01G327400' => 'tca', 'Thecc.04G229200' => 'tca', 'Thecc.05G037400' => 'tca', 'Thecc.09G318600' => 'tca', 'Thecc.09G318700' => 'tca', 'Thhalv10006238m.g' => 'esa', 'Thhalv10014321m.g' => 'esa', 'Thhalv10014335m.g' => 'esa', 'Thhalv10015826m.g' => 'esa', 'Thhalv10017107m.g' => 'esa', 'Thhalv10017180m.g' => 'esa', 'Thhalv10029339m.g' => 'esa', 'TPR.G1699' => 'tpr', 'TPR.G23609' => 'tpr', 'TPR.G3081' => 'tpr', 'TPR.G40397' => 'tpr', 'TPR.G5522' => 'tpr', 'TPR.G5618' => 'tpr', 'TPR.G5626' => 'tpr', 'TWI09G1632' => 'twi', 'TWI23G1230' => 'twi', 'TWI53G1064' => 'twi', 'TWI59G0751' => 'twi', 'TWI74G0947' => 'twi', 'TWI77G0337' => 'twi', 'TWI79G1254' => 'twi', 'unitig_0.g2341' => 'ugi', 'unitig_26.g10006' => 'ugi', 'unitig_26.g10008' => 'ugi', 'unitig_26.g9192' => 'ugi', 'vmacro14547' => 'vma', 'vmacro15333' => 'vma', 'vmacro18743' => 'vma', 'vmacro20166' => 'vma', 'VMungo0331G0523' => 'vmu', 'VMungo0331G1202' => 'vmu', 'VMungo0720G1228' => 'vmu', 'VMungo0720G1514' => 'vmu', 'VMungo1080G0169' => 'vmu', 'VMungo1127G1475' => 'vmu', 'VMungo1383G1208' => 'vmu', 'VMungo1383G1698' => 'vmu', 'Zm00001eb012270' => 'zma', 'Zm00001eb054100' => 'zma', 'Zm00001eb063350' => 'zma', 'Zm00001eb328560' => 'zma', 'Zm00001eb342820' => 'zma', 'Zm00001eb362210' => 'zma', 'Zm00001eb397730' => 'zma', 'Zm00001eb399750' => 'zma' ), 'gf_id' => 'HOM05D000959', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000959' ), 'data_identifier' => 'HOM05D000959', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000959', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '622', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p07100' => 'bna', 'A03p11720' => 'bna', 'A05p08300' => 'bna', 'A05p13380' => 'bna', 'A09p54130' => 'bna', 'A10p16690' => 'bna', 'A10p16700' => 'bna', 'A10p33390' => 'bna', 'Aa31LG10G16020' => 'aar', 'Aa31LG1G11810' => 'aar', 'Aa31LG1G11830' => 'aar', 'Aa31LG1G22510' => 'aar', 'Aa31LG5G4890' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5793' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2310' => 'aag', 'Actinidia08499' => 'ach', 'Actinidia11262' => 'ach', 'Actinidia23926' => 'ach', 'Actinidia34420' => 'ach', 'Actinidia36970' => 'ach', 'Ah.02g111220' => 'amhyb', 'Ah.15g097750' => 'amhyb', 'AL4G27500' => 'aly', 'AL6G11470' => 'aly', 'AL8G35950' => 'aly', 'AL8G35960' => 'aly', 'AL8G35970' => 'aly', 'Aqoxy1G00912' => 'aox', 'Aqoxy2G02253' => 'aox', 'Aqoxy2G02411' => 'aox', 'Aqoxy5G00485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BZ66YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K8ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM4FUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6BF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HFV7XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25JBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0YNNV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MAKK6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P70IT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP2Z6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V61LZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YWP64R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3S9AI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7PGHH' => 'arhy', 'AT2G32150' => 'ath', 'AT3G62040' => 'ath', 'AT5G02230' => 'ath', 'AT5G59480' => 'ath', 'AT5G59490' => 'ath', 'ATR0332G060' => 'atr', 'ATR0559G190' => 'atr', 'ATR0693G294' => 'atr', 'Atru.chr3.3975' => 'acertr', 'Atru.chr3.3976' => 'acertr', 'Atru.chr3.3977' => 'acertr', 'Atru.chr4.2498' => 'acertr', 'Atru.chr5.838' => 'acertr', 'Atru.chr8.1990' => 'acertr', 'Atru.chr8.1991' => 'acertr', 'Atru.chr8.1992' => 'acertr', 'AUR62001759' => 'cqu', 'AUR62009545' => 'cqu', 'AUR62010474' => 'cqu', 'AUR62025820' => 'cqu', 'AUR62030422' => 'cqu', 'AUR62033605' => 'cqu', 'AUR62038615' => 'cqu', 'AUR62041347' => 'cqu', 'BcaB01g04574' => 'bca', 'BcaB02g09263' => 'bca', 'BcaB02g10453' => 'bca', 'BcaB05g22513' => 'bca', 'BcaB08g36253' => 'bca', 'BcaB08g36254' => 'bca', 'BcaC01g06519' => 'bca', 'BcaC02g11889' => 'bca', 'BcaC03g14010' => 'bca', 'BcaC03g18439' => 'bca', 'BcaC04g19765' => 'bca', 'BcaC09g48432' => 'bca', 'BcaNung07302' => 'bca', 'BolC2t06040H' => 'bol', 'BolC2t07346H' => 'bol', 'BolC3t13817H' => 'bol', 'BolC4t22625H' => 'bol', 'BolC4t23297H' => 'bol', 'BolC8t51278H' => 'bol', 'BolC9t58050H' => 'bol', 'BolC9t58051H' => 'bol', 'BolC9t60163H' => 'bol', 'BraA02t04712Z' => 'bra', 'BraA02t05791Z' => 'bra', 'BraA03t10483Z' => 'bra', 'BraA05t19795Z' => 'bra', 'BraA05t20276Z' => 'bra', 'BraA09t40827Z' => 'bra', 'BraA10t43750Z' => 'bra', 'BraA10t43751Z' => 'bra', 'BraA10t45370Z' => 'bra', 'C02p00400' => 'bna', 'C02p12460' => 'bna', 'C03p13680' => 'bna', 'C04p10270' => 'bna', 'C04p17500' => 'bna', 'C08p37010' => 'bna', 'C09p51880' => 'bna', 'C09p51890' => 'bna', 'C09p74300' => 'bna', 'CAN.G179.26' => 'can', 'CAN.G3384.1' => 'can', 'CAN.G394.68' => 'can', 'CAN.G907.13' => 'can', 'CANSAT11G0012' => 'cansat', 'CANSAT25G1586' => 'cansat', 'CANSAT35G0735' => 'cansat', 'CANSAT54G0556' => 'cansat', 'CANSAT64G0356' => 'cansat', 'CANSAT78G2042' => 'cansat', 'CARHR125920' => 'chi', 'CARHR131910' => 'chi', 'CARHR172390' => 'chi', 'CARHR211140' => 'chi', 'CARHR285850' => 'chi', 'CARHR285860' => 'chi', 'Carub.0004s1347' => 'cru', 'Carub.0004s1960' => 'cru', 'Carub.0005s2880' => 'cru', 'Carub.0006s0107' => 'cru', 'Carub.0008s2015' => 'cru', 'Carub.0008s2016' => 'cru', 'Carub.0008s2017' => 'cru', 'Ca_01315_v3' => 'car', 'Ca_05063_v3' => 'car', 'Ca_10231_v3' => 'car', 'Ca_10913_v3' => 'car', 'Ca_19156_v3' => 'car', 'Ca_23644_v3' => 'car', 'Ca_26735_v3' => 'car', 'Cc01_g13130' => 'ccan', 'Cc02_g21690' => 'ccan', 'Cc03_g03600' => 'ccan', 'Cc06_g02510' => 'ccan', 'CDE02G1265' => 'cde', 'CDE05G0415' => 'cde', 'CDE08G1082' => 'cde', 'Cfa005780' => 'cfa', 'Cfa011522' => 'cfa', 'Cfa011523' => 'cfa', 'Cfa015627' => 'cfa', 'Cfa017359' => 'cfa', 'Ciclev10005687m.g' => 'ccl', 'Ciclev10012173m.g' => 'ccl', 'Ciclev10021621m.g' => 'ccl', 'Ciclev10028968m.g' => 'ccl', 'Ciclev10029907m.g' => 'ccl', 'CiPaw.01G164800' => 'cil', 'CiPaw.07G083700' => 'cil', 'CiPaw.07G127000' => 'cil', 'CiPaw.07G136900' => 'cil', 'CiPaw.08G081700' => 'cil', 'CiPaw.09G194600' => 'cil', 'CiPaw.10G146500' => 'cil', 'CiPaw.13G091500' => 'cil', 'CiPaw.13G091600' => 'cil', 'ClCG00G003390' => 'cla', 'ClCG01G007220' => 'cla', 'ClCG03G001370' => 'cla', 'ClCG04G008100' => 'cla', 'ClCG06G006110' => 'cla', 'ClCG06G006130' => 'cla', 'ClCG10G021210' => 'cla', 'COL.COLO4_07648' => 'col', 'COL.COLO4_07650' => 'col', 'COL.COLO4_07651' => 'col', 'COL.COLO4_14780' => 'col', 'COL.COLO4_18546' => 'col', 'COL.COLO4_18547' => 'col', 'COL.COLO4_23103' => 'col', 'COL.COLO4_30419' => 'col', 'COL.COLO4_34232' => 'col', 'Cpa.g.sc169.20' => 'cpa', 'Cpa.g.sc57.45' => 'cpa', 'Cpa.g.sc58.124' => 'cpa', 'Cpa.g.sc58.125' => 'cpa', 'Cpa.g.sc81.118' => 'cpa', 'Cpa.g.sc81.119' => 'cpa', 'Cre12.g524700' => 'cre', 'CsaV3_1G034430' => 'csa', 'CsaV3_1G034440' => 'csa', 'CsaV3_1G034450' => 'csa', 'CsaV3_3G034830' => 'csa', 'CsaV3_4G025090' => 'csa', 'CsaV3_5G018660' => 'csa', 'CsaV3_6G038160' => 'csa', 'CSS0003447' => 'camsi', 'CSS0017840' => 'camsi', 'CSS0019260' => 'camsi', 'CSS0040375' => 'camsi', 'CSS0042533' => 'camsi', 'DCAR_005960' => 'dca', 'DCAR_012104' => 'dca', 'DCAR_012105' => 'dca', 'DCAR_012293' => 'dca', 'DCAR_015632' => 'dca', 'DCAR_024602' => 'dca', 'DCAR_028752' => 'dca', 'Dinv06261' => 'din', 'Dinv13982' => 'din', 'Dinv17029' => 'din', 'Dinv18463' => 'din', 'Dinv33181' => 'din', 'Dinv35585' => 'din', 'Dinv37161' => 'din', 'Dinv42977' => 'din', 'Dinv43122' => 'din', 'Dinv44517' => 'din', 'Duzib093G0256' => 'dzi', 'Duzib106G1254' => 'dzi', 'Duzib128G1789' => 'dzi', 'Duzib133G0633' => 'dzi', 'Duzib138G0510' => 'dzi', 'Duzib150G1084' => 'dzi', 'Duzib168G0488' => 'dzi', 'Duzib168G1523' => 'dzi', 'Duzib170G0133' => 'dzi', 'ECA234G1433' => 'eca', 'ECA236G1432' => 'eca', 'ECA236G2256' => 'eca', 'ECA236G2365' => 'eca', 'ECA236G4830' => 'eca', 'ECA248G1505' => 'eca', 'EL10Ac3g06431' => 'bvu', 'EL10Ac5g12577' => 'bvu', 'EL10Ac6g13533' => 'bvu', 'EL10Ac7g16045' => 'bvu', 'Eucgr.A01281' => 'egr', 'Eucgr.B02326' => 'egr', 'Eucgr.H03532' => 'egr', 'Eucgr.K00553' => 'egr', 'Eucgr.K03116' => 'egr', 'FAN02G3963' => 'fan', 'FAN05G0438' => 'fan', 'FAN09G2434' => 'fan', 'FAN12G3984' => 'fan', 'FAN14G0798' => 'fan', 'FAN17G0652' => 'fan', 'FAN19G1988' => 'fan', 'FAN22G0632' => 'fan', 'FAN23G0387' => 'fan', 'FAN26G1323' => 'fan', 'FAN28G0666' => 'fan', 'FvH4_1g26080' => 'fve', 'FvH4_3g36780' => 'fve', 'FvH4_4g15270' => 'fve', 'FvH4_6g13490' => 'fve', 'Glyma.01G098700' => 'gma', 'Glyma.03G065900' => 'gma', 'Glyma.03G073754' => 'gma', 'Glyma.03G073758' => 'gma', 'Glyma.03G083200' => 'gma', 'Glyma.03G225500' => 'gma', 'Glyma.05G037766' => 'gma', 'Glyma.07G133500' => 'gma', 'Glyma.10G139400' => 'gma', 'Glyma.10G248900' => 'gma', 'Glyma.11G137800' => 'gma', 'Glyma.12G061300' => 'gma', 'Glyma.13G337900' => 'gma', 'Glyma.15G036600' => 'gma', 'Glyma.18G182800' => 'gma', 'Glyma.19G222500' => 'gma', 'Glyma.20G144800' => 'gma', 'Gohir.A01G222000' => 'ghi', 'Gohir.A03G044000' => 'ghi', 'Gohir.A03G044100' => 'ghi', 'Gohir.A04G083100' => 'ghi', 'Gohir.A07G127200' => 'ghi', 'Gohir.A07G132400' => 'ghi', 'Gohir.A08G000700' => 'ghi', 'Gohir.A11G327300' => 'ghi', 'Gohir.D01G211500' => 'ghi', 'Gohir.D03G123400' => 'ghi', 'Gohir.D03G123500' => 'ghi', 'Gohir.D04G121800' => 'ghi', 'Gohir.D07G131500' => 'ghi', 'Gohir.D07G136600' => 'ghi', 'Gohir.D08G011600' => 'ghi', 'Gohir.D11G346200' => 'ghi', 'Gorai.001G142800' => 'gra', 'Gorai.001G148700' => 'gra', 'Gorai.002G257300' => 'gra', 'Gorai.003G130000' => 'gra', 'Gorai.003G130100' => 'gra', 'Gorai.004G005300' => 'gra', 'Gorai.007G376500' => 'gra', 'Gorai.012G104700' => 'gra', 'GSVIVG01017946001' => 'vvi', 'GSVIVG01024928001' => 'vvi', 'GSVIVG01028227001' => 'vvi', 'GSVIVG01034151001' => 'vvi', 'HanXRQChr05g0135031' => 'han', 'HanXRQChr05g0135041' => 'han', 'HanXRQChr05g0140021' => 'han', 'HanXRQChr06g0178981' => 'han', 'HanXRQChr07g0188251' => 'han', 'HanXRQChr08g0235311' => 'han', 'HanXRQChr09g0271011' => 'han', 'HanXRQChr10g0293321' => 'han', 'HanXRQChr13g0388171' => 'han', 'Haze_00916' => 'cav', 'Haze_05063' => 'cav', 'Haze_20814' => 'cav', 'Haze_24128' => 'cav', 'Hma1.2p1_0745F.1_g212010' => 'hma', 'Hma1.2p1_0757F.1_g213260' => 'hma', 'Hma1.2p1_0936F.1_g238840' => 'hma', 'Hma1.2p1_1735F.1_g299890' => 'hma', 'Hma1.2p1_1861F.1_g305685' => 'hma', 'HPP92_003397' => 'vpl', 'HPP92_012597' => 'vpl', 'HPP92_015520' => 'vpl', 'HPP92_015539' => 'vpl', 'HPP92_020373' => 'vpl', 'Hund04938' => 'sun', 'Hund10677' => 'sun', 'Hund11033' => 'sun', 'Hund12155' => 'sun', 'Lalb_Chr01g0022551' => 'lal', 'Lalb_Chr03g0042341' => 'lal', 'Lalb_Chr07g0192931' => 'lal', 'Lalb_Chr12g0209551' => 'lal', 'Lalb_Chr19g0125251' => 'lal', 'Lalb_Chr19g0137891' => 'lal', 'Lalb_Chr21g0304641' => 'lal', 'Lalb_Chr21g0309881' => 'lal', 'Lj1A5T12' => 'lonja', 'Lj1C148G10' => 'lonja', 'Lj2A93T83' => 'lonja', 'Lj3A738G68' => 'lonja', 'Lj3C966T1' => 'lonja', 'Lj3g0018958' => 'lja', 'Lj3g0021831' => 'lja', 'Lj3g0025443' => 'lja', 'Lj4g0026809' => 'lja', 'Lj5g0012558' => 'lja', 'Lj5g0021586' => 'lja', 'Lsat_1_v5_gn_5_156840' => 'lsa', 'Lsat_1_v5_gn_8_73460' => 'lsa', 'Lsat_1_v5_gn_8_73481' => 'lsa', 'Lsat_1_v5_gn_9_31601' => 'lsa', 'Lsat_1_v5_gn_9_77320' => 'lsa', 'Manes.01G171300' => 'mes', 'Manes.01G171400' => 'mes', 'Manes.01G236100' => 'mes', 'Manes.02G130500' => 'mes', 'Manes.02G130600' => 'mes', 'Manes.03G180200' => 'mes', 'Manes.05G007000' => 'mes', 'Manes.08G084400' => 'mes', 'Manes.09G092600' => 'mes', 'Manes.15G027900' => 'mes', 'MBI04_g40948_MAGBIO' => 'mbi', 'MBI14_g12123_MAGBIO' => 'mbi', 'MBI18_g28915_MAGBIO' => 'mbi', 'MCO09G053' => 'mco', 'MCO11G782' => 'mco', 'MCO15G215' => 'mco', 'MD03G1088500' => 'mdo', 'MD03G1088600' => 'mdo', 'MD04G1130800' => 'mdo', 'MD09G1291700' => 'mdo', 'MD11G1097500' => 'mdo', 'MD11G1097600' => 'mdo', 'MD12G1143900' => 'mdo', 'MD13G1191400' => 'mdo', 'MD16G1191500' => 'mdo', 'Medtr1g085570' => 'mtr', 'Medtr1g104610' => 'mtr', 'Medtr2g097520' => 'mtr', 'Medtr4g021800' => 'mtr', 'Medtr4g021825' => 'mtr', 'Medtr4g064270' => 'mtr', 'Medtr4g064380' => 'mtr', 'Medtr7g062150' => 'mtr', 'MELO3C003138.2' => 'cme', 'MELO3C005187.2' => 'cme', 'MELO3C009252.2' => 'cme', 'MELO3C014481.2' => 'cme', 'MELO3C020616.2' => 'cme', 'MELO3C020617.2' => 'cme', 'MELO3C020618.2' => 'cme', 'Migut.G00328' => 'egut', 'Migut.J00320' => 'egut', 'Migut.L01000' => 'egut', 'Migut.L01953' => 'egut', 'MSTRG.10253' => 'ama', 'MSTRG.19077' => 'ama', 'MSTRG.26780' => 'ama', 'MSTRG.4023' => 'ama', 'MSTRG.5655' => 'ama', 'MSTRG.9992' => 'ama', 'Nitab4.5_0000043g0310' => 'nta', 'Nitab4.5_0000463g0080' => 'nta', 'Nitab4.5_0000705g0170' => 'nta', 'Nitab4.5_0001326g0060' => 'nta', 'Nitab4.5_0001628g0030' => 'nta', 'Nitab4.5_0002103g0110' => 'nta', 'Nitab4.5_0002946g0030' => 'nta', 'Nitab4.5_0004639g0030' => 'nta', 'Nn2g11149' => 'nnu', 'Nn2g13389' => 'nnu', 'Nn4g25326' => 'nnu', 'Nn4g26290' => 'nnu', 'Nn5g29865' => 'nnu', 'Oeu004163.1' => 'oeu', 'Oeu006901.1' => 'oeu', 'Oeu010096.1' => 'oeu', 'Oeu024340.1' => 'oeu', 'Oeu048369.1' => 'oeu', 'Os01g0973000' => 'osa', 'Os03g0273800' => 'osa', 'Os03g0701200' => 'osa', 'Os03g0834050' => 'osa', 'Os07g0634400' => 'osa', 'Peaxi162Scf00092g01414' => 'pax', 'Peaxi162Scf00165g00818' => 'pax', 'Peaxi162Scf00309g00516' => 'pax', 'Peaxi162Scf00774g00218' => 'pax', 'PGR004G1824' => 'pgr', 'PGR004G2606' => 'pgr', 'PGR031G2716' => 'pgr', 'PGR102G2460' => 'pgr', 'PGR142G2599' => 'pgr', 'PGSC0003DMG400000843' => 'stu', 'PGSC0003DMG400008829' => 'stu', 'PGSC0003DMG400030418' => 'stu', 'PGSC0003DMG400031834' => 'stu', 'PGSC0003DMG401028300' => 'stu', 'PGSC0003DMG402028300' => 'stu', 'Phvul.001G219300' => 'pvu', 'Phvul.007G056000' => 'pvu', 'Phvul.007G208000' => 'pvu', 'Phvul.008G119500' => 'pvu', 'Phvul.010G011200' => 'pvu', 'Phvul.010G014800' => 'pvu', 'Phvul.011G062900' => 'pvu', 'Phvul.L007043' => 'pvu', 'Potri.001G242300' => 'ptr', 'Potri.002G185300' => 'ptr', 'Potri.006G086900' => 'ptr', 'Potri.008G151700' => 'ptr', 'Potri.009G033500' => 'ptr', 'Potri.010G089300' => 'ptr', 'Potri.014G110800' => 'ptr', 'Pp3c27_8130' => 'ppa', 'Pp3c6_27410' => 'ppa', 'PRCOL_00001659' => 'pco', 'PRCOL_00001927' => 'pco', 'PRCOL_00003649' => 'pco', 'Prupe.1G011600' => 'ppe', 'Prupe.3G000800' => 'ppe', 'Prupe.3G001100' => 'ppe', 'Prupe.6G072700' => 'ppe', 'Prupe.6G072800' => 'ppe', 'Prupe.6G257300' => 'ppe', 'Prupe.8G033000' => 'ppe', 'Psat0s2633g0080' => 'psa', 'Psat0s3396g0080' => 'psa', 'Psat0s3396g0200' => 'psa', 'Psat3g139080' => 'psa', 'Psat5g285080' => 'psa', 'Psat6g157760' => 'psa', 'Psat6g208440' => 'psa', 'Psat7g215320' => 'psa', 'Psat7g215400' => 'psa', 'Psat7g235600' => 'psa', 'Psat7g235760' => 'psa', 'PSO063G4603' => 'pso', 'PSO210G0182' => 'pso', 'PSO210G0196' => 'pso', 'PSO339G0394' => 'pso', 'PSO339G4127' => 'pso', 'PSO513G0064' => 'pso', 'PSO761G0079' => 'pso', 'QL01p031003' => 'qlo', 'QL01p031078' => 'qlo', 'QL06p003004' => 'qlo', 'QL07p048731' => 'qlo', 'QL09p037427' => 'qlo', 'RcHm_v2.0_Chr3g0466361' => 'rch', 'RcHm_v2.0_Chr3g0485571' => 'rch', 'RcHm_v2.0_Chr4g0416551' => 'rch', 'RcHm_v2.0_Chr5g0065831' => 'rch', 'Rhsim01G0230500' => 'rsi', 'Rhsim05G0194000' => 'rsi', 'Rhsim08G0250400' => 'rsi', 'Sabra02G0131000' => 'sbr', 'Sabra06G0066300' => 'sbr', 'Sabra08G0115500' => 'sbr', 'Sabra09G0023900' => 'sbr', 'Sabra10G0054000' => 'sbr', 'Sabra14G0081500' => 'sbr', 'Sabra16G0147100' => 'sbr', 'SalBow2G2957' => 'sbo', 'SalBow4G3320' => 'sbo', 'SalBow8G1894' => 'sbo', 'Sc07g0007950' => 'sci', 'Sc12g0001360' => 'sci', 'Sc13g0004330' => 'sci', 'Sc20g0005010' => 'sci', 'Sed0000361' => 'sed', 'Sed0001706' => 'sed', 'Sed0002422' => 'sed', 'Sed0004029' => 'sed', 'Sed0004602' => 'sed', 'Sed0004943' => 'sed', 'Sed0008646' => 'sed', 'Sed0023313' => 'sed', 'Sed0024843' => 'sed', 'SEGI_00081' => 'sgi', 'SEGI_00947' => 'sgi', 'SEGI_04046' => 'sgi', 'SEGI_06880' => 'sgi', 'SEGI_09736' => 'sgi', 'SEGI_12741' => 'sgi', 'SEGI_14530' => 'sgi', 'SEGI_20705' => 'sgi', 'SEGI_26088' => 'sgi', 'SEGI_28323' => 'sgi', 'SEGI_33343' => 'sgi', 'SGA_v2.0_scaffold126G33775' => 'sas', 'SGA_v2.0_scaffold2G01337' => 'sas', 'SGA_v2.0_scaffold38G15006' => 'sas', 'SGA_v2.0_scaffold39G15264' => 'sas', 'SGA_v2.0_scaffold453G51880' => 'sas', 'SHI12696' => 'shi', 'SMO367G1096' => 'smo', 'Solyc01g068630.3' => 'sly', 'Solyc05g011880.3' => 'sly', 'Solyc06g076300.3' => 'sly', 'Solyc09g010940.4' => 'sly', 'Solyc09g075890.3' => 'sly', 'Sopen01g030560' => 'spe', 'Sopen05g006630' => 'spe', 'Sopen06g032720' => 'spe', 'Sopen09g005660' => 'spe', 'Sopen09g030690' => 'spe', 'Sp4g14540' => 'spa', 'Sp4g20030' => 'spa', 'Sp5g01320' => 'spa', 'Sp6g21170' => 'spa', 'Sp6g21180' => 'spa', 'Sp6g21190' => 'spa', 'Sp6g40220' => 'spa', 'TAR362G0122' => 'tar', 'TAR362G1338' => 'tar', 'TAR369G0590' => 'tar', 'TAR371G0824' => 'tar', 'TAR622G1429' => 'tar', 'TAR623G0734' => 'tar', 'TAR625G0441' => 'tar', 'TAR629G0976' => 'tar', 'TAR633G1195' => 'tar', 'TAR636G2660' => 'tar', 'THA.LOC104799440' => 'tha', 'THA.LOC104800966' => 'tha', 'THA.LOC104806559' => 'tha', 'THA.LOC104810765' => 'tha', 'THA.LOC104816266' => 'tha', 'THA.LOC104817419' => 'tha', 'THA.LOC104827021' => 'tha', 'Thecc.01G327400' => 'tca', 'Thecc.04G229200' => 'tca', 'Thecc.05G037400' => 'tca', 'Thecc.09G318600' => 'tca', 'Thecc.09G318700' => 'tca', 'Thhalv10006238m.g' => 'esa', 'Thhalv10014321m.g' => 'esa', 'Thhalv10014335m.g' => 'esa', 'Thhalv10015826m.g' => 'esa', 'Thhalv10017107m.g' => 'esa', 'Thhalv10017180m.g' => 'esa', 'Thhalv10029339m.g' => 'esa', 'TPR.G1699' => 'tpr', 'TPR.G23609' => 'tpr', 'TPR.G3081' => 'tpr', 'TPR.G40397' => 'tpr', 'TPR.G5522' => 'tpr', 'TPR.G5618' => 'tpr', 'TPR.G5626' => 'tpr', 'TWI09G1632' => 'twi', 'TWI23G1230' => 'twi', 'TWI53G1064' => 'twi', 'TWI59G0751' => 'twi', 'TWI74G0947' => 'twi', 'TWI77G0337' => 'twi', 'TWI79G1254' => 'twi', 'unitig_0.g2341' => 'ugi', 'unitig_26.g10006' => 'ugi', 'unitig_26.g10008' => 'ugi', 'unitig_26.g9192' => 'ugi', 'vmacro14547' => 'vma', 'vmacro15333' => 'vma', 'vmacro18743' => 'vma', 'vmacro20166' => 'vma', 'VMungo0331G0523' => 'vmu', 'VMungo0331G1202' => 'vmu', 'VMungo0720G1228' => 'vmu', 'VMungo0720G1514' => 'vmu', 'VMungo1080G0169' => 'vmu', 'VMungo1127G1475' => 'vmu', 'VMungo1383G1208' => 'vmu', 'VMungo1383G1698' => 'vmu', 'Zm00001eb012270' => 'zma', 'Zm00001eb054100' => 'zma', 'Zm00001eb063350' => 'zma', 'Zm00001eb328560' => 'zma', 'Zm00001eb342820' => 'zma', 'Zm00001eb362210' => 'zma', 'Zm00001eb397730' => 'zma', 'Zm00001eb399750' => 'zma' ) $gf_id = 'HOM05D000959' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000959' ) $data_identifier = 'HOM05D000959' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 5, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 5, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 10, 'mbi' => (int) 3, 'mco' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 2, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 3, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 11, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399750' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000959', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '622', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p07100' => 'bna', 'A03p11720' => 'bna', 'A05p08300' => 'bna', 'A05p13380' => 'bna', 'A09p54130' => 'bna', 'A10p16690' => 'bna', 'A10p16700' => 'bna', 'A10p33390' => 'bna', 'Aa31LG10G16020' => 'aar', 'Aa31LG1G11810' => 'aar', 'Aa31LG1G11830' => 'aar', 'Aa31LG1G22510' => 'aar', 'Aa31LG5G4890' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5793' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2310' => 'aag', 'Actinidia08499' => 'ach', 'Actinidia11262' => 'ach', 'Actinidia23926' => 'ach', 'Actinidia34420' => 'ach', 'Actinidia36970' => 'ach', 'Ah.02g111220' => 'amhyb', 'Ah.15g097750' => 'amhyb', 'AL4G27500' => 'aly', 'AL6G11470' => 'aly', 'AL8G35950' => 'aly', 'AL8G35960' => 'aly', 'AL8G35970' => 'aly', 'Aqoxy1G00912' => 'aox', 'Aqoxy2G02253' => 'aox', 'Aqoxy2G02411' => 'aox', 'Aqoxy5G00485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BZ66YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K8ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM4FUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6BF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HFV7XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25JBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0YNNV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MAKK6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P70IT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP2Z6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V61LZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YWP64R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3S9AI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7PGHH' => 'arhy', 'AT2G32150' => 'ath', 'AT3G62040' => 'ath', 'AT5G02230' => 'ath', 'AT5G59480' => 'ath', 'AT5G59490' => 'ath', 'ATR0332G060' => 'atr', 'ATR0559G190' => 'atr', 'ATR0693G294' => 'atr', 'Atru.chr3.3975' => 'acertr', 'Atru.chr3.3976' => 'acertr', 'Atru.chr3.3977' => 'acertr', 'Atru.chr4.2498' => 'acertr', 'Atru.chr5.838' => 'acertr', 'Atru.chr8.1990' => 'acertr', 'Atru.chr8.1991' => 'acertr', 'Atru.chr8.1992' => 'acertr', 'AUR62001759' => 'cqu', 'AUR62009545' => 'cqu', 'AUR62010474' => 'cqu', 'AUR62025820' => 'cqu', 'AUR62030422' => 'cqu', 'AUR62033605' => 'cqu', 'AUR62038615' => 'cqu', 'AUR62041347' => 'cqu', 'BcaB01g04574' => 'bca', 'BcaB02g09263' => 'bca', 'BcaB02g10453' => 'bca', 'BcaB05g22513' => 'bca', 'BcaB08g36253' => 'bca', 'BcaB08g36254' => 'bca', 'BcaC01g06519' => 'bca', 'BcaC02g11889' => 'bca', 'BcaC03g14010' => 'bca', 'BcaC03g18439' => 'bca', 'BcaC04g19765' => 'bca', 'BcaC09g48432' => 'bca', 'BcaNung07302' => 'bca', 'BolC2t06040H' => 'bol', 'BolC2t07346H' => 'bol', 'BolC3t13817H' => 'bol', 'BolC4t22625H' => 'bol', 'BolC4t23297H' => 'bol', 'BolC8t51278H' => 'bol', 'BolC9t58050H' => 'bol', 'BolC9t58051H' => 'bol', 'BolC9t60163H' => 'bol', 'BraA02t04712Z' => 'bra', 'BraA02t05791Z' => 'bra', 'BraA03t10483Z' => 'bra', 'BraA05t19795Z' => 'bra', 'BraA05t20276Z' => 'bra', 'BraA09t40827Z' => 'bra', 'BraA10t43750Z' => 'bra', 'BraA10t43751Z' => 'bra', 'BraA10t45370Z' => 'bra', 'C02p00400' => 'bna', 'C02p12460' => 'bna', 'C03p13680' => 'bna', 'C04p10270' => 'bna', 'C04p17500' => 'bna', 'C08p37010' => 'bna', 'C09p51880' => 'bna', 'C09p51890' => 'bna', 'C09p74300' => 'bna', 'CAN.G179.26' => 'can', 'CAN.G3384.1' => 'can', 'CAN.G394.68' => 'can', 'CAN.G907.13' => 'can', 'CANSAT11G0012' => 'cansat', 'CANSAT25G1586' => 'cansat', 'CANSAT35G0735' => 'cansat', 'CANSAT54G0556' => 'cansat', 'CANSAT64G0356' => 'cansat', 'CANSAT78G2042' => 'cansat', 'CARHR125920' => 'chi', 'CARHR131910' => 'chi', 'CARHR172390' => 'chi', 'CARHR211140' => 'chi', 'CARHR285850' => 'chi', 'CARHR285860' => 'chi', 'Carub.0004s1347' => 'cru', 'Carub.0004s1960' => 'cru', 'Carub.0005s2880' => 'cru', 'Carub.0006s0107' => 'cru', 'Carub.0008s2015' => 'cru', 'Carub.0008s2016' => 'cru', 'Carub.0008s2017' => 'cru', 'Ca_01315_v3' => 'car', 'Ca_05063_v3' => 'car', 'Ca_10231_v3' => 'car', 'Ca_10913_v3' => 'car', 'Ca_19156_v3' => 'car', 'Ca_23644_v3' => 'car', 'Ca_26735_v3' => 'car', 'Cc01_g13130' => 'ccan', 'Cc02_g21690' => 'ccan', 'Cc03_g03600' => 'ccan', 'Cc06_g02510' => 'ccan', 'CDE02G1265' => 'cde', 'CDE05G0415' => 'cde', 'CDE08G1082' => 'cde', 'Cfa005780' => 'cfa', 'Cfa011522' => 'cfa', 'Cfa011523' => 'cfa', 'Cfa015627' => 'cfa', 'Cfa017359' => 'cfa', 'Ciclev10005687m.g' => 'ccl', 'Ciclev10012173m.g' => 'ccl', 'Ciclev10021621m.g' => 'ccl', 'Ciclev10028968m.g' => 'ccl', 'Ciclev10029907m.g' => 'ccl', 'CiPaw.01G164800' => 'cil', 'CiPaw.07G083700' => 'cil', 'CiPaw.07G127000' => 'cil', 'CiPaw.07G136900' => 'cil', 'CiPaw.08G081700' => 'cil', 'CiPaw.09G194600' => 'cil', 'CiPaw.10G146500' => 'cil', 'CiPaw.13G091500' => 'cil', 'CiPaw.13G091600' => 'cil', 'ClCG00G003390' => 'cla', 'ClCG01G007220' => 'cla', 'ClCG03G001370' => 'cla', 'ClCG04G008100' => 'cla', 'ClCG06G006110' => 'cla', 'ClCG06G006130' => 'cla', 'ClCG10G021210' => 'cla', 'COL.COLO4_07648' => 'col', 'COL.COLO4_07650' => 'col', 'COL.COLO4_07651' => 'col', 'COL.COLO4_14780' => 'col', 'COL.COLO4_18546' => 'col', 'COL.COLO4_18547' => 'col', 'COL.COLO4_23103' => 'col', 'COL.COLO4_30419' => 'col', 'COL.COLO4_34232' => 'col', 'Cpa.g.sc169.20' => 'cpa', 'Cpa.g.sc57.45' => 'cpa', 'Cpa.g.sc58.124' => 'cpa', 'Cpa.g.sc58.125' => 'cpa', 'Cpa.g.sc81.118' => 'cpa', 'Cpa.g.sc81.119' => 'cpa', 'Cre12.g524700' => 'cre', 'CsaV3_1G034430' => 'csa', 'CsaV3_1G034440' => 'csa', 'CsaV3_1G034450' => 'csa', 'CsaV3_3G034830' => 'csa', 'CsaV3_4G025090' => 'csa', 'CsaV3_5G018660' => 'csa', 'CsaV3_6G038160' => 'csa', 'CSS0003447' => 'camsi', 'CSS0017840' => 'camsi', 'CSS0019260' => 'camsi', 'CSS0040375' => 'camsi', 'CSS0042533' => 'camsi', 'DCAR_005960' => 'dca', 'DCAR_012104' => 'dca', 'DCAR_012105' => 'dca', 'DCAR_012293' => 'dca', 'DCAR_015632' => 'dca', 'DCAR_024602' => 'dca', 'DCAR_028752' => 'dca', 'Dinv06261' => 'din', 'Dinv13982' => 'din', 'Dinv17029' => 'din', 'Dinv18463' => 'din', 'Dinv33181' => 'din', 'Dinv35585' => 'din', 'Dinv37161' => 'din', 'Dinv42977' => 'din', 'Dinv43122' => 'din', 'Dinv44517' => 'din', 'Duzib093G0256' => 'dzi', 'Duzib106G1254' => 'dzi', 'Duzib128G1789' => 'dzi', 'Duzib133G0633' => 'dzi', 'Duzib138G0510' => 'dzi', 'Duzib150G1084' => 'dzi', 'Duzib168G0488' => 'dzi', 'Duzib168G1523' => 'dzi', 'Duzib170G0133' => 'dzi', 'ECA234G1433' => 'eca', 'ECA236G1432' => 'eca', 'ECA236G2256' => 'eca', 'ECA236G2365' => 'eca', 'ECA236G4830' => 'eca', 'ECA248G1505' => 'eca', 'EL10Ac3g06431' => 'bvu', 'EL10Ac5g12577' => 'bvu', 'EL10Ac6g13533' => 'bvu', 'EL10Ac7g16045' => 'bvu', 'Eucgr.A01281' => 'egr', 'Eucgr.B02326' => 'egr', 'Eucgr.H03532' => 'egr', 'Eucgr.K00553' => 'egr', 'Eucgr.K03116' => 'egr', 'FAN02G3963' => 'fan', 'FAN05G0438' => 'fan', 'FAN09G2434' => 'fan', 'FAN12G3984' => 'fan', 'FAN14G0798' => 'fan', 'FAN17G0652' => 'fan', 'FAN19G1988' => 'fan', 'FAN22G0632' => 'fan', 'FAN23G0387' => 'fan', 'FAN26G1323' => 'fan', 'FAN28G0666' => 'fan', 'FvH4_1g26080' => 'fve', 'FvH4_3g36780' => 'fve', 'FvH4_4g15270' => 'fve', 'FvH4_6g13490' => 'fve', 'Glyma.01G098700' => 'gma', 'Glyma.03G065900' => 'gma', 'Glyma.03G073754' => 'gma', 'Glyma.03G073758' => 'gma', 'Glyma.03G083200' => 'gma', 'Glyma.03G225500' => 'gma', 'Glyma.05G037766' => 'gma', 'Glyma.07G133500' => 'gma', 'Glyma.10G139400' => 'gma', 'Glyma.10G248900' => 'gma', 'Glyma.11G137800' => 'gma', 'Glyma.12G061300' => 'gma', 'Glyma.13G337900' => 'gma', 'Glyma.15G036600' => 'gma', 'Glyma.18G182800' => 'gma', 'Glyma.19G222500' => 'gma', 'Glyma.20G144800' => 'gma', 'Gohir.A01G222000' => 'ghi', 'Gohir.A03G044000' => 'ghi', 'Gohir.A03G044100' => 'ghi', 'Gohir.A04G083100' => 'ghi', 'Gohir.A07G127200' => 'ghi', 'Gohir.A07G132400' => 'ghi', 'Gohir.A08G000700' => 'ghi', 'Gohir.A11G327300' => 'ghi', 'Gohir.D01G211500' => 'ghi', 'Gohir.D03G123400' => 'ghi', 'Gohir.D03G123500' => 'ghi', 'Gohir.D04G121800' => 'ghi', 'Gohir.D07G131500' => 'ghi', 'Gohir.D07G136600' => 'ghi', 'Gohir.D08G011600' => 'ghi', 'Gohir.D11G346200' => 'ghi', 'Gorai.001G142800' => 'gra', 'Gorai.001G148700' => 'gra', 'Gorai.002G257300' => 'gra', 'Gorai.003G130000' => 'gra', 'Gorai.003G130100' => 'gra', 'Gorai.004G005300' => 'gra', 'Gorai.007G376500' => 'gra', 'Gorai.012G104700' => 'gra', 'GSVIVG01017946001' => 'vvi', 'GSVIVG01024928001' => 'vvi', 'GSVIVG01028227001' => 'vvi', 'GSVIVG01034151001' => 'vvi', 'HanXRQChr05g0135031' => 'han', 'HanXRQChr05g0135041' => 'han', 'HanXRQChr05g0140021' => 'han', 'HanXRQChr06g0178981' => 'han', 'HanXRQChr07g0188251' => 'han', 'HanXRQChr08g0235311' => 'han', 'HanXRQChr09g0271011' => 'han', 'HanXRQChr10g0293321' => 'han', 'HanXRQChr13g0388171' => 'han', 'Haze_00916' => 'cav', 'Haze_05063' => 'cav', 'Haze_20814' => 'cav', 'Haze_24128' => 'cav', 'Hma1.2p1_0745F.1_g212010' => 'hma', 'Hma1.2p1_0757F.1_g213260' => 'hma', 'Hma1.2p1_0936F.1_g238840' => 'hma', 'Hma1.2p1_1735F.1_g299890' => 'hma', 'Hma1.2p1_1861F.1_g305685' => 'hma', 'HPP92_003397' => 'vpl', 'HPP92_012597' => 'vpl', 'HPP92_015520' => 'vpl', 'HPP92_015539' => 'vpl', 'HPP92_020373' => 'vpl', 'Hund04938' => 'sun', 'Hund10677' => 'sun', 'Hund11033' => 'sun', 'Hund12155' => 'sun', 'Lalb_Chr01g0022551' => 'lal', 'Lalb_Chr03g0042341' => 'lal', 'Lalb_Chr07g0192931' => 'lal', 'Lalb_Chr12g0209551' => 'lal', 'Lalb_Chr19g0125251' => 'lal', 'Lalb_Chr19g0137891' => 'lal', 'Lalb_Chr21g0304641' => 'lal', 'Lalb_Chr21g0309881' => 'lal', 'Lj1A5T12' => 'lonja', 'Lj1C148G10' => 'lonja', 'Lj2A93T83' => 'lonja', 'Lj3A738G68' => 'lonja', 'Lj3C966T1' => 'lonja', 'Lj3g0018958' => 'lja', 'Lj3g0021831' => 'lja', 'Lj3g0025443' => 'lja', 'Lj4g0026809' => 'lja', 'Lj5g0012558' => 'lja', 'Lj5g0021586' => 'lja', 'Lsat_1_v5_gn_5_156840' => 'lsa', 'Lsat_1_v5_gn_8_73460' => 'lsa', 'Lsat_1_v5_gn_8_73481' => 'lsa', 'Lsat_1_v5_gn_9_31601' => 'lsa', 'Lsat_1_v5_gn_9_77320' => 'lsa', 'Manes.01G171300' => 'mes', 'Manes.01G171400' => 'mes', 'Manes.01G236100' => 'mes', 'Manes.02G130500' => 'mes', 'Manes.02G130600' => 'mes', 'Manes.03G180200' => 'mes', 'Manes.05G007000' => 'mes', 'Manes.08G084400' => 'mes', 'Manes.09G092600' => 'mes', 'Manes.15G027900' => 'mes', 'MBI04_g40948_MAGBIO' => 'mbi', 'MBI14_g12123_MAGBIO' => 'mbi', 'MBI18_g28915_MAGBIO' => 'mbi', 'MCO09G053' => 'mco', 'MCO11G782' => 'mco', 'MCO15G215' => 'mco', 'MD03G1088500' => 'mdo', 'MD03G1088600' => 'mdo', 'MD04G1130800' => 'mdo', 'MD09G1291700' => 'mdo', 'MD11G1097500' => 'mdo', 'MD11G1097600' => 'mdo', 'MD12G1143900' => 'mdo', 'MD13G1191400' => 'mdo', 'MD16G1191500' => 'mdo', 'Medtr1g085570' => 'mtr', 'Medtr1g104610' => 'mtr', 'Medtr2g097520' => 'mtr', 'Medtr4g021800' => 'mtr', 'Medtr4g021825' => 'mtr', 'Medtr4g064270' => 'mtr', 'Medtr4g064380' => 'mtr', 'Medtr7g062150' => 'mtr', 'MELO3C003138.2' => 'cme', 'MELO3C005187.2' => 'cme', 'MELO3C009252.2' => 'cme', 'MELO3C014481.2' => 'cme', 'MELO3C020616.2' => 'cme', 'MELO3C020617.2' => 'cme', 'MELO3C020618.2' => 'cme', 'Migut.G00328' => 'egut', 'Migut.J00320' => 'egut', 'Migut.L01000' => 'egut', 'Migut.L01953' => 'egut', 'MSTRG.10253' => 'ama', 'MSTRG.19077' => 'ama', 'MSTRG.26780' => 'ama', 'MSTRG.4023' => 'ama', 'MSTRG.5655' => 'ama', 'MSTRG.9992' => 'ama', 'Nitab4.5_0000043g0310' => 'nta', 'Nitab4.5_0000463g0080' => 'nta', 'Nitab4.5_0000705g0170' => 'nta', 'Nitab4.5_0001326g0060' => 'nta', 'Nitab4.5_0001628g0030' => 'nta', 'Nitab4.5_0002103g0110' => 'nta', 'Nitab4.5_0002946g0030' => 'nta', 'Nitab4.5_0004639g0030' => 'nta', 'Nn2g11149' => 'nnu', 'Nn2g13389' => 'nnu', 'Nn4g25326' => 'nnu', 'Nn4g26290' => 'nnu', 'Nn5g29865' => 'nnu', 'Oeu004163.1' => 'oeu', 'Oeu006901.1' => 'oeu', 'Oeu010096.1' => 'oeu', 'Oeu024340.1' => 'oeu', 'Oeu048369.1' => 'oeu', 'Os01g0973000' => 'osa', 'Os03g0273800' => 'osa', 'Os03g0701200' => 'osa', 'Os03g0834050' => 'osa', 'Os07g0634400' => 'osa', 'Peaxi162Scf00092g01414' => 'pax', 'Peaxi162Scf00165g00818' => 'pax', 'Peaxi162Scf00309g00516' => 'pax', 'Peaxi162Scf00774g00218' => 'pax', 'PGR004G1824' => 'pgr', 'PGR004G2606' => 'pgr', 'PGR031G2716' => 'pgr', 'PGR102G2460' => 'pgr', 'PGR142G2599' => 'pgr', 'PGSC0003DMG400000843' => 'stu', 'PGSC0003DMG400008829' => 'stu', 'PGSC0003DMG400030418' => 'stu', 'PGSC0003DMG400031834' => 'stu', 'PGSC0003DMG401028300' => 'stu', 'PGSC0003DMG402028300' => 'stu', 'Phvul.001G219300' => 'pvu', 'Phvul.007G056000' => 'pvu', 'Phvul.007G208000' => 'pvu', 'Phvul.008G119500' => 'pvu', 'Phvul.010G011200' => 'pvu', 'Phvul.010G014800' => 'pvu', 'Phvul.011G062900' => 'pvu', 'Phvul.L007043' => 'pvu', 'Potri.001G242300' => 'ptr', 'Potri.002G185300' => 'ptr', 'Potri.006G086900' => 'ptr', 'Potri.008G151700' => 'ptr', 'Potri.009G033500' => 'ptr', 'Potri.010G089300' => 'ptr', 'Potri.014G110800' => 'ptr', 'Pp3c27_8130' => 'ppa', 'Pp3c6_27410' => 'ppa', 'PRCOL_00001659' => 'pco', 'PRCOL_00001927' => 'pco', 'PRCOL_00003649' => 'pco', 'Prupe.1G011600' => 'ppe', 'Prupe.3G000800' => 'ppe', 'Prupe.3G001100' => 'ppe', 'Prupe.6G072700' => 'ppe', 'Prupe.6G072800' => 'ppe', 'Prupe.6G257300' => 'ppe', 'Prupe.8G033000' => 'ppe', 'Psat0s2633g0080' => 'psa', 'Psat0s3396g0080' => 'psa', 'Psat0s3396g0200' => 'psa', 'Psat3g139080' => 'psa', 'Psat5g285080' => 'psa', 'Psat6g157760' => 'psa', 'Psat6g208440' => 'psa', 'Psat7g215320' => 'psa', 'Psat7g215400' => 'psa', 'Psat7g235600' => 'psa', 'Psat7g235760' => 'psa', 'PSO063G4603' => 'pso', 'PSO210G0182' => 'pso', 'PSO210G0196' => 'pso', 'PSO339G0394' => 'pso', 'PSO339G4127' => 'pso', 'PSO513G0064' => 'pso', 'PSO761G0079' => 'pso', 'QL01p031003' => 'qlo', 'QL01p031078' => 'qlo', 'QL06p003004' => 'qlo', 'QL07p048731' => 'qlo', 'QL09p037427' => 'qlo', 'RcHm_v2.0_Chr3g0466361' => 'rch', 'RcHm_v2.0_Chr3g0485571' => 'rch', 'RcHm_v2.0_Chr4g0416551' => 'rch', 'RcHm_v2.0_Chr5g0065831' => 'rch', 'Rhsim01G0230500' => 'rsi', 'Rhsim05G0194000' => 'rsi', 'Rhsim08G0250400' => 'rsi', 'Sabra02G0131000' => 'sbr', 'Sabra06G0066300' => 'sbr', 'Sabra08G0115500' => 'sbr', 'Sabra09G0023900' => 'sbr', 'Sabra10G0054000' => 'sbr', 'Sabra14G0081500' => 'sbr', 'Sabra16G0147100' => 'sbr', 'SalBow2G2957' => 'sbo', 'SalBow4G3320' => 'sbo', 'SalBow8G1894' => 'sbo', 'Sc07g0007950' => 'sci', 'Sc12g0001360' => 'sci', 'Sc13g0004330' => 'sci', 'Sc20g0005010' => 'sci', 'Sed0000361' => 'sed', 'Sed0001706' => 'sed', 'Sed0002422' => 'sed', 'Sed0004029' => 'sed', 'Sed0004602' => 'sed', 'Sed0004943' => 'sed', 'Sed0008646' => 'sed', 'Sed0023313' => 'sed', 'Sed0024843' => 'sed', 'SEGI_00081' => 'sgi', 'SEGI_00947' => 'sgi', 'SEGI_04046' => 'sgi', 'SEGI_06880' => 'sgi', 'SEGI_09736' => 'sgi', 'SEGI_12741' => 'sgi', 'SEGI_14530' => 'sgi', 'SEGI_20705' => 'sgi', 'SEGI_26088' => 'sgi', 'SEGI_28323' => 'sgi', 'SEGI_33343' => 'sgi', 'SGA_v2.0_scaffold126G33775' => 'sas', 'SGA_v2.0_scaffold2G01337' => 'sas', 'SGA_v2.0_scaffold38G15006' => 'sas', 'SGA_v2.0_scaffold39G15264' => 'sas', 'SGA_v2.0_scaffold453G51880' => 'sas', 'SHI12696' => 'shi', 'SMO367G1096' => 'smo', 'Solyc01g068630.3' => 'sly', 'Solyc05g011880.3' => 'sly', 'Solyc06g076300.3' => 'sly', 'Solyc09g010940.4' => 'sly', 'Solyc09g075890.3' => 'sly', 'Sopen01g030560' => 'spe', 'Sopen05g006630' => 'spe', 'Sopen06g032720' => 'spe', 'Sopen09g005660' => 'spe', 'Sopen09g030690' => 'spe', 'Sp4g14540' => 'spa', 'Sp4g20030' => 'spa', 'Sp5g01320' => 'spa', 'Sp6g21170' => 'spa', 'Sp6g21180' => 'spa', 'Sp6g21190' => 'spa', 'Sp6g40220' => 'spa', 'TAR362G0122' => 'tar', 'TAR362G1338' => 'tar', 'TAR369G0590' => 'tar', 'TAR371G0824' => 'tar', 'TAR622G1429' => 'tar', 'TAR623G0734' => 'tar', 'TAR625G0441' => 'tar', 'TAR629G0976' => 'tar', 'TAR633G1195' => 'tar', 'TAR636G2660' => 'tar', 'THA.LOC104799440' => 'tha', 'THA.LOC104800966' => 'tha', 'THA.LOC104806559' => 'tha', 'THA.LOC104810765' => 'tha', 'THA.LOC104816266' => 'tha', 'THA.LOC104817419' => 'tha', 'THA.LOC104827021' => 'tha', 'Thecc.01G327400' => 'tca', 'Thecc.04G229200' => 'tca', 'Thecc.05G037400' => 'tca', 'Thecc.09G318600' => 'tca', 'Thecc.09G318700' => 'tca', 'Thhalv10006238m.g' => 'esa', 'Thhalv10014321m.g' => 'esa', 'Thhalv10014335m.g' => 'esa', 'Thhalv10015826m.g' => 'esa', 'Thhalv10017107m.g' => 'esa', 'Thhalv10017180m.g' => 'esa', 'Thhalv10029339m.g' => 'esa', 'TPR.G1699' => 'tpr', 'TPR.G23609' => 'tpr', 'TPR.G3081' => 'tpr', 'TPR.G40397' => 'tpr', 'TPR.G5522' => 'tpr', 'TPR.G5618' => 'tpr', 'TPR.G5626' => 'tpr', 'TWI09G1632' => 'twi', 'TWI23G1230' => 'twi', 'TWI53G1064' => 'twi', 'TWI59G0751' => 'twi', 'TWI74G0947' => 'twi', 'TWI77G0337' => 'twi', 'TWI79G1254' => 'twi', 'unitig_0.g2341' => 'ugi', 'unitig_26.g10006' => 'ugi', 'unitig_26.g10008' => 'ugi', 'unitig_26.g9192' => 'ugi', 'vmacro14547' => 'vma', 'vmacro15333' => 'vma', 'vmacro18743' => 'vma', 'vmacro20166' => 'vma', 'VMungo0331G0523' => 'vmu', 'VMungo0331G1202' => 'vmu', 'VMungo0720G1228' => 'vmu', 'VMungo0720G1514' => 'vmu', 'VMungo1080G0169' => 'vmu', 'VMungo1127G1475' => 'vmu', 'VMungo1383G1208' => 'vmu', 'VMungo1383G1698' => 'vmu', 'Zm00001eb012270' => 'zma', 'Zm00001eb054100' => 'zma', 'Zm00001eb063350' => 'zma', 'Zm00001eb328560' => 'zma', 'Zm00001eb342820' => 'zma', 'Zm00001eb362210' => 'zma', 'Zm00001eb397730' => 'zma', 'Zm00001eb399750' => 'zma' ), 'gf_id' => 'HOM05D000959', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000959' ), 'data_identifier' => 'HOM05D000959', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000959', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '622', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p07100' => 'bna', 'A03p11720' => 'bna', 'A05p08300' => 'bna', 'A05p13380' => 'bna', 'A09p54130' => 'bna', 'A10p16690' => 'bna', 'A10p16700' => 'bna', 'A10p33390' => 'bna', 'Aa31LG10G16020' => 'aar', 'Aa31LG1G11810' => 'aar', 'Aa31LG1G11830' => 'aar', 'Aa31LG1G22510' => 'aar', 'Aa31LG5G4890' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5793' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2310' => 'aag', 'Actinidia08499' => 'ach', 'Actinidia11262' => 'ach', 'Actinidia23926' => 'ach', 'Actinidia34420' => 'ach', 'Actinidia36970' => 'ach', 'Ah.02g111220' => 'amhyb', 'Ah.15g097750' => 'amhyb', 'AL4G27500' => 'aly', 'AL6G11470' => 'aly', 'AL8G35950' => 'aly', 'AL8G35960' => 'aly', 'AL8G35970' => 'aly', 'Aqoxy1G00912' => 'aox', 'Aqoxy2G02253' => 'aox', 'Aqoxy2G02411' => 'aox', 'Aqoxy5G00485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BZ66YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K8ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM4FUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6BF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HFV7XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25JBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0YNNV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MAKK6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P70IT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP2Z6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V61LZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YWP64R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3S9AI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7PGHH' => 'arhy', 'AT2G32150' => 'ath', 'AT3G62040' => 'ath', 'AT5G02230' => 'ath', 'AT5G59480' => 'ath', 'AT5G59490' => 'ath', 'ATR0332G060' => 'atr', 'ATR0559G190' => 'atr', 'ATR0693G294' => 'atr', 'Atru.chr3.3975' => 'acertr', 'Atru.chr3.3976' => 'acertr', 'Atru.chr3.3977' => 'acertr', 'Atru.chr4.2498' => 'acertr', 'Atru.chr5.838' => 'acertr', 'Atru.chr8.1990' => 'acertr', 'Atru.chr8.1991' => 'acertr', 'Atru.chr8.1992' => 'acertr', 'AUR62001759' => 'cqu', 'AUR62009545' => 'cqu', 'AUR62010474' => 'cqu', 'AUR62025820' => 'cqu', 'AUR62030422' => 'cqu', 'AUR62033605' => 'cqu', 'AUR62038615' => 'cqu', 'AUR62041347' => 'cqu', 'BcaB01g04574' => 'bca', 'BcaB02g09263' => 'bca', 'BcaB02g10453' => 'bca', 'BcaB05g22513' => 'bca', 'BcaB08g36253' => 'bca', 'BcaB08g36254' => 'bca', 'BcaC01g06519' => 'bca', 'BcaC02g11889' => 'bca', 'BcaC03g14010' => 'bca', 'BcaC03g18439' => 'bca', 'BcaC04g19765' => 'bca', 'BcaC09g48432' => 'bca', 'BcaNung07302' => 'bca', 'BolC2t06040H' => 'bol', 'BolC2t07346H' => 'bol', 'BolC3t13817H' => 'bol', 'BolC4t22625H' => 'bol', 'BolC4t23297H' => 'bol', 'BolC8t51278H' => 'bol', 'BolC9t58050H' => 'bol', 'BolC9t58051H' => 'bol', 'BolC9t60163H' => 'bol', 'BraA02t04712Z' => 'bra', 'BraA02t05791Z' => 'bra', 'BraA03t10483Z' => 'bra', 'BraA05t19795Z' => 'bra', 'BraA05t20276Z' => 'bra', 'BraA09t40827Z' => 'bra', 'BraA10t43750Z' => 'bra', 'BraA10t43751Z' => 'bra', 'BraA10t45370Z' => 'bra', 'C02p00400' => 'bna', 'C02p12460' => 'bna', 'C03p13680' => 'bna', 'C04p10270' => 'bna', 'C04p17500' => 'bna', 'C08p37010' => 'bna', 'C09p51880' => 'bna', 'C09p51890' => 'bna', 'C09p74300' => 'bna', 'CAN.G179.26' => 'can', 'CAN.G3384.1' => 'can', 'CAN.G394.68' => 'can', 'CAN.G907.13' => 'can', 'CANSAT11G0012' => 'cansat', 'CANSAT25G1586' => 'cansat', 'CANSAT35G0735' => 'cansat', 'CANSAT54G0556' => 'cansat', 'CANSAT64G0356' => 'cansat', 'CANSAT78G2042' => 'cansat', 'CARHR125920' => 'chi', 'CARHR131910' => 'chi', 'CARHR172390' => 'chi', 'CARHR211140' => 'chi', 'CARHR285850' => 'chi', 'CARHR285860' => 'chi', 'Carub.0004s1347' => 'cru', 'Carub.0004s1960' => 'cru', 'Carub.0005s2880' => 'cru', 'Carub.0006s0107' => 'cru', 'Carub.0008s2015' => 'cru', 'Carub.0008s2016' => 'cru', 'Carub.0008s2017' => 'cru', 'Ca_01315_v3' => 'car', 'Ca_05063_v3' => 'car', 'Ca_10231_v3' => 'car', 'Ca_10913_v3' => 'car', 'Ca_19156_v3' => 'car', 'Ca_23644_v3' => 'car', 'Ca_26735_v3' => 'car', 'Cc01_g13130' => 'ccan', 'Cc02_g21690' => 'ccan', 'Cc03_g03600' => 'ccan', 'Cc06_g02510' => 'ccan', 'CDE02G1265' => 'cde', 'CDE05G0415' => 'cde', 'CDE08G1082' => 'cde', 'Cfa005780' => 'cfa', 'Cfa011522' => 'cfa', 'Cfa011523' => 'cfa', 'Cfa015627' => 'cfa', 'Cfa017359' => 'cfa', 'Ciclev10005687m.g' => 'ccl', 'Ciclev10012173m.g' => 'ccl', 'Ciclev10021621m.g' => 'ccl', 'Ciclev10028968m.g' => 'ccl', 'Ciclev10029907m.g' => 'ccl', 'CiPaw.01G164800' => 'cil', 'CiPaw.07G083700' => 'cil', 'CiPaw.07G127000' => 'cil', 'CiPaw.07G136900' => 'cil', 'CiPaw.08G081700' => 'cil', 'CiPaw.09G194600' => 'cil', 'CiPaw.10G146500' => 'cil', 'CiPaw.13G091500' => 'cil', 'CiPaw.13G091600' => 'cil', 'ClCG00G003390' => 'cla', 'ClCG01G007220' => 'cla', 'ClCG03G001370' => 'cla', 'ClCG04G008100' => 'cla', 'ClCG06G006110' => 'cla', 'ClCG06G006130' => 'cla', 'ClCG10G021210' => 'cla', 'COL.COLO4_07648' => 'col', 'COL.COLO4_07650' => 'col', 'COL.COLO4_07651' => 'col', 'COL.COLO4_14780' => 'col', 'COL.COLO4_18546' => 'col', 'COL.COLO4_18547' => 'col', 'COL.COLO4_23103' => 'col', 'COL.COLO4_30419' => 'col', 'COL.COLO4_34232' => 'col', 'Cpa.g.sc169.20' => 'cpa', 'Cpa.g.sc57.45' => 'cpa', 'Cpa.g.sc58.124' => 'cpa', 'Cpa.g.sc58.125' => 'cpa', 'Cpa.g.sc81.118' => 'cpa', 'Cpa.g.sc81.119' => 'cpa', 'Cre12.g524700' => 'cre', 'CsaV3_1G034430' => 'csa', 'CsaV3_1G034440' => 'csa', 'CsaV3_1G034450' => 'csa', 'CsaV3_3G034830' => 'csa', 'CsaV3_4G025090' => 'csa', 'CsaV3_5G018660' => 'csa', 'CsaV3_6G038160' => 'csa', 'CSS0003447' => 'camsi', 'CSS0017840' => 'camsi', 'CSS0019260' => 'camsi', 'CSS0040375' => 'camsi', 'CSS0042533' => 'camsi', 'DCAR_005960' => 'dca', 'DCAR_012104' => 'dca', 'DCAR_012105' => 'dca', 'DCAR_012293' => 'dca', 'DCAR_015632' => 'dca', 'DCAR_024602' => 'dca', 'DCAR_028752' => 'dca', 'Dinv06261' => 'din', 'Dinv13982' => 'din', 'Dinv17029' => 'din', 'Dinv18463' => 'din', 'Dinv33181' => 'din', 'Dinv35585' => 'din', 'Dinv37161' => 'din', 'Dinv42977' => 'din', 'Dinv43122' => 'din', 'Dinv44517' => 'din', 'Duzib093G0256' => 'dzi', 'Duzib106G1254' => 'dzi', 'Duzib128G1789' => 'dzi', 'Duzib133G0633' => 'dzi', 'Duzib138G0510' => 'dzi', 'Duzib150G1084' => 'dzi', 'Duzib168G0488' => 'dzi', 'Duzib168G1523' => 'dzi', 'Duzib170G0133' => 'dzi', 'ECA234G1433' => 'eca', 'ECA236G1432' => 'eca', 'ECA236G2256' => 'eca', 'ECA236G2365' => 'eca', 'ECA236G4830' => 'eca', 'ECA248G1505' => 'eca', 'EL10Ac3g06431' => 'bvu', 'EL10Ac5g12577' => 'bvu', 'EL10Ac6g13533' => 'bvu', 'EL10Ac7g16045' => 'bvu', 'Eucgr.A01281' => 'egr', 'Eucgr.B02326' => 'egr', 'Eucgr.H03532' => 'egr', 'Eucgr.K00553' => 'egr', 'Eucgr.K03116' => 'egr', 'FAN02G3963' => 'fan', 'FAN05G0438' => 'fan', 'FAN09G2434' => 'fan', 'FAN12G3984' => 'fan', 'FAN14G0798' => 'fan', 'FAN17G0652' => 'fan', 'FAN19G1988' => 'fan', 'FAN22G0632' => 'fan', 'FAN23G0387' => 'fan', 'FAN26G1323' => 'fan', 'FAN28G0666' => 'fan', 'FvH4_1g26080' => 'fve', 'FvH4_3g36780' => 'fve', 'FvH4_4g15270' => 'fve', 'FvH4_6g13490' => 'fve', 'Glyma.01G098700' => 'gma', 'Glyma.03G065900' => 'gma', 'Glyma.03G073754' => 'gma', 'Glyma.03G073758' => 'gma', 'Glyma.03G083200' => 'gma', 'Glyma.03G225500' => 'gma', 'Glyma.05G037766' => 'gma', 'Glyma.07G133500' => 'gma', 'Glyma.10G139400' => 'gma', 'Glyma.10G248900' => 'gma', 'Glyma.11G137800' => 'gma', 'Glyma.12G061300' => 'gma', 'Glyma.13G337900' => 'gma', 'Glyma.15G036600' => 'gma', 'Glyma.18G182800' => 'gma', 'Glyma.19G222500' => 'gma', 'Glyma.20G144800' => 'gma', 'Gohir.A01G222000' => 'ghi', 'Gohir.A03G044000' => 'ghi', 'Gohir.A03G044100' => 'ghi', 'Gohir.A04G083100' => 'ghi', 'Gohir.A07G127200' => 'ghi', 'Gohir.A07G132400' => 'ghi', 'Gohir.A08G000700' => 'ghi', 'Gohir.A11G327300' => 'ghi', 'Gohir.D01G211500' => 'ghi', 'Gohir.D03G123400' => 'ghi', 'Gohir.D03G123500' => 'ghi', 'Gohir.D04G121800' => 'ghi', 'Gohir.D07G131500' => 'ghi', 'Gohir.D07G136600' => 'ghi', 'Gohir.D08G011600' => 'ghi', 'Gohir.D11G346200' => 'ghi', 'Gorai.001G142800' => 'gra', 'Gorai.001G148700' => 'gra', 'Gorai.002G257300' => 'gra', 'Gorai.003G130000' => 'gra', 'Gorai.003G130100' => 'gra', 'Gorai.004G005300' => 'gra', 'Gorai.007G376500' => 'gra', 'Gorai.012G104700' => 'gra', 'GSVIVG01017946001' => 'vvi', 'GSVIVG01024928001' => 'vvi', 'GSVIVG01028227001' => 'vvi', 'GSVIVG01034151001' => 'vvi', 'HanXRQChr05g0135031' => 'han', 'HanXRQChr05g0135041' => 'han', 'HanXRQChr05g0140021' => 'han', 'HanXRQChr06g0178981' => 'han', 'HanXRQChr07g0188251' => 'han', 'HanXRQChr08g0235311' => 'han', 'HanXRQChr09g0271011' => 'han', 'HanXRQChr10g0293321' => 'han', 'HanXRQChr13g0388171' => 'han', 'Haze_00916' => 'cav', 'Haze_05063' => 'cav', 'Haze_20814' => 'cav', 'Haze_24128' => 'cav', 'Hma1.2p1_0745F.1_g212010' => 'hma', 'Hma1.2p1_0757F.1_g213260' => 'hma', 'Hma1.2p1_0936F.1_g238840' => 'hma', 'Hma1.2p1_1735F.1_g299890' => 'hma', 'Hma1.2p1_1861F.1_g305685' => 'hma', 'HPP92_003397' => 'vpl', 'HPP92_012597' => 'vpl', 'HPP92_015520' => 'vpl', 'HPP92_015539' => 'vpl', 'HPP92_020373' => 'vpl', 'Hund04938' => 'sun', 'Hund10677' => 'sun', 'Hund11033' => 'sun', 'Hund12155' => 'sun', 'Lalb_Chr01g0022551' => 'lal', 'Lalb_Chr03g0042341' => 'lal', 'Lalb_Chr07g0192931' => 'lal', 'Lalb_Chr12g0209551' => 'lal', 'Lalb_Chr19g0125251' => 'lal', 'Lalb_Chr19g0137891' => 'lal', 'Lalb_Chr21g0304641' => 'lal', 'Lalb_Chr21g0309881' => 'lal', 'Lj1A5T12' => 'lonja', 'Lj1C148G10' => 'lonja', 'Lj2A93T83' => 'lonja', 'Lj3A738G68' => 'lonja', 'Lj3C966T1' => 'lonja', 'Lj3g0018958' => 'lja', 'Lj3g0021831' => 'lja', 'Lj3g0025443' => 'lja', 'Lj4g0026809' => 'lja', 'Lj5g0012558' => 'lja', 'Lj5g0021586' => 'lja', 'Lsat_1_v5_gn_5_156840' => 'lsa', 'Lsat_1_v5_gn_8_73460' => 'lsa', 'Lsat_1_v5_gn_8_73481' => 'lsa', 'Lsat_1_v5_gn_9_31601' => 'lsa', 'Lsat_1_v5_gn_9_77320' => 'lsa', 'Manes.01G171300' => 'mes', 'Manes.01G171400' => 'mes', 'Manes.01G236100' => 'mes', 'Manes.02G130500' => 'mes', 'Manes.02G130600' => 'mes', 'Manes.03G180200' => 'mes', 'Manes.05G007000' => 'mes', 'Manes.08G084400' => 'mes', 'Manes.09G092600' => 'mes', 'Manes.15G027900' => 'mes', 'MBI04_g40948_MAGBIO' => 'mbi', 'MBI14_g12123_MAGBIO' => 'mbi', 'MBI18_g28915_MAGBIO' => 'mbi', 'MCO09G053' => 'mco', 'MCO11G782' => 'mco', 'MCO15G215' => 'mco', 'MD03G1088500' => 'mdo', 'MD03G1088600' => 'mdo', 'MD04G1130800' => 'mdo', 'MD09G1291700' => 'mdo', 'MD11G1097500' => 'mdo', 'MD11G1097600' => 'mdo', 'MD12G1143900' => 'mdo', 'MD13G1191400' => 'mdo', 'MD16G1191500' => 'mdo', 'Medtr1g085570' => 'mtr', 'Medtr1g104610' => 'mtr', 'Medtr2g097520' => 'mtr', 'Medtr4g021800' => 'mtr', 'Medtr4g021825' => 'mtr', 'Medtr4g064270' => 'mtr', 'Medtr4g064380' => 'mtr', 'Medtr7g062150' => 'mtr', 'MELO3C003138.2' => 'cme', 'MELO3C005187.2' => 'cme', 'MELO3C009252.2' => 'cme', 'MELO3C014481.2' => 'cme', 'MELO3C020616.2' => 'cme', 'MELO3C020617.2' => 'cme', 'MELO3C020618.2' => 'cme', 'Migut.G00328' => 'egut', 'Migut.J00320' => 'egut', 'Migut.L01000' => 'egut', 'Migut.L01953' => 'egut', 'MSTRG.10253' => 'ama', 'MSTRG.19077' => 'ama', 'MSTRG.26780' => 'ama', 'MSTRG.4023' => 'ama', 'MSTRG.5655' => 'ama', 'MSTRG.9992' => 'ama', 'Nitab4.5_0000043g0310' => 'nta', 'Nitab4.5_0000463g0080' => 'nta', 'Nitab4.5_0000705g0170' => 'nta', 'Nitab4.5_0001326g0060' => 'nta', 'Nitab4.5_0001628g0030' => 'nta', 'Nitab4.5_0002103g0110' => 'nta', 'Nitab4.5_0002946g0030' => 'nta', 'Nitab4.5_0004639g0030' => 'nta', 'Nn2g11149' => 'nnu', 'Nn2g13389' => 'nnu', 'Nn4g25326' => 'nnu', 'Nn4g26290' => 'nnu', 'Nn5g29865' => 'nnu', 'Oeu004163.1' => 'oeu', 'Oeu006901.1' => 'oeu', 'Oeu010096.1' => 'oeu', 'Oeu024340.1' => 'oeu', 'Oeu048369.1' => 'oeu', 'Os01g0973000' => 'osa', 'Os03g0273800' => 'osa', 'Os03g0701200' => 'osa', 'Os03g0834050' => 'osa', 'Os07g0634400' => 'osa', 'Peaxi162Scf00092g01414' => 'pax', 'Peaxi162Scf00165g00818' => 'pax', 'Peaxi162Scf00309g00516' => 'pax', 'Peaxi162Scf00774g00218' => 'pax', 'PGR004G1824' => 'pgr', 'PGR004G2606' => 'pgr', 'PGR031G2716' => 'pgr', 'PGR102G2460' => 'pgr', 'PGR142G2599' => 'pgr', 'PGSC0003DMG400000843' => 'stu', 'PGSC0003DMG400008829' => 'stu', 'PGSC0003DMG400030418' => 'stu', 'PGSC0003DMG400031834' => 'stu', 'PGSC0003DMG401028300' => 'stu', 'PGSC0003DMG402028300' => 'stu', 'Phvul.001G219300' => 'pvu', 'Phvul.007G056000' => 'pvu', 'Phvul.007G208000' => 'pvu', 'Phvul.008G119500' => 'pvu', 'Phvul.010G011200' => 'pvu', 'Phvul.010G014800' => 'pvu', 'Phvul.011G062900' => 'pvu', 'Phvul.L007043' => 'pvu', 'Potri.001G242300' => 'ptr', 'Potri.002G185300' => 'ptr', 'Potri.006G086900' => 'ptr', 'Potri.008G151700' => 'ptr', 'Potri.009G033500' => 'ptr', 'Potri.010G089300' => 'ptr', 'Potri.014G110800' => 'ptr', 'Pp3c27_8130' => 'ppa', 'Pp3c6_27410' => 'ppa', 'PRCOL_00001659' => 'pco', 'PRCOL_00001927' => 'pco', 'PRCOL_00003649' => 'pco', 'Prupe.1G011600' => 'ppe', 'Prupe.3G000800' => 'ppe', 'Prupe.3G001100' => 'ppe', 'Prupe.6G072700' => 'ppe', 'Prupe.6G072800' => 'ppe', 'Prupe.6G257300' => 'ppe', 'Prupe.8G033000' => 'ppe', 'Psat0s2633g0080' => 'psa', 'Psat0s3396g0080' => 'psa', 'Psat0s3396g0200' => 'psa', 'Psat3g139080' => 'psa', 'Psat5g285080' => 'psa', 'Psat6g157760' => 'psa', 'Psat6g208440' => 'psa', 'Psat7g215320' => 'psa', 'Psat7g215400' => 'psa', 'Psat7g235600' => 'psa', 'Psat7g235760' => 'psa', 'PSO063G4603' => 'pso', 'PSO210G0182' => 'pso', 'PSO210G0196' => 'pso', 'PSO339G0394' => 'pso', 'PSO339G4127' => 'pso', 'PSO513G0064' => 'pso', 'PSO761G0079' => 'pso', 'QL01p031003' => 'qlo', 'QL01p031078' => 'qlo', 'QL06p003004' => 'qlo', 'QL07p048731' => 'qlo', 'QL09p037427' => 'qlo', 'RcHm_v2.0_Chr3g0466361' => 'rch', 'RcHm_v2.0_Chr3g0485571' => 'rch', 'RcHm_v2.0_Chr4g0416551' => 'rch', 'RcHm_v2.0_Chr5g0065831' => 'rch', 'Rhsim01G0230500' => 'rsi', 'Rhsim05G0194000' => 'rsi', 'Rhsim08G0250400' => 'rsi', 'Sabra02G0131000' => 'sbr', 'Sabra06G0066300' => 'sbr', 'Sabra08G0115500' => 'sbr', 'Sabra09G0023900' => 'sbr', 'Sabra10G0054000' => 'sbr', 'Sabra14G0081500' => 'sbr', 'Sabra16G0147100' => 'sbr', 'SalBow2G2957' => 'sbo', 'SalBow4G3320' => 'sbo', 'SalBow8G1894' => 'sbo', 'Sc07g0007950' => 'sci', 'Sc12g0001360' => 'sci', 'Sc13g0004330' => 'sci', 'Sc20g0005010' => 'sci', 'Sed0000361' => 'sed', 'Sed0001706' => 'sed', 'Sed0002422' => 'sed', 'Sed0004029' => 'sed', 'Sed0004602' => 'sed', 'Sed0004943' => 'sed', 'Sed0008646' => 'sed', 'Sed0023313' => 'sed', 'Sed0024843' => 'sed', 'SEGI_00081' => 'sgi', 'SEGI_00947' => 'sgi', 'SEGI_04046' => 'sgi', 'SEGI_06880' => 'sgi', 'SEGI_09736' => 'sgi', 'SEGI_12741' => 'sgi', 'SEGI_14530' => 'sgi', 'SEGI_20705' => 'sgi', 'SEGI_26088' => 'sgi', 'SEGI_28323' => 'sgi', 'SEGI_33343' => 'sgi', 'SGA_v2.0_scaffold126G33775' => 'sas', 'SGA_v2.0_scaffold2G01337' => 'sas', 'SGA_v2.0_scaffold38G15006' => 'sas', 'SGA_v2.0_scaffold39G15264' => 'sas', 'SGA_v2.0_scaffold453G51880' => 'sas', 'SHI12696' => 'shi', 'SMO367G1096' => 'smo', 'Solyc01g068630.3' => 'sly', 'Solyc05g011880.3' => 'sly', 'Solyc06g076300.3' => 'sly', 'Solyc09g010940.4' => 'sly', 'Solyc09g075890.3' => 'sly', 'Sopen01g030560' => 'spe', 'Sopen05g006630' => 'spe', 'Sopen06g032720' => 'spe', 'Sopen09g005660' => 'spe', 'Sopen09g030690' => 'spe', 'Sp4g14540' => 'spa', 'Sp4g20030' => 'spa', 'Sp5g01320' => 'spa', 'Sp6g21170' => 'spa', 'Sp6g21180' => 'spa', 'Sp6g21190' => 'spa', 'Sp6g40220' => 'spa', 'TAR362G0122' => 'tar', 'TAR362G1338' => 'tar', 'TAR369G0590' => 'tar', 'TAR371G0824' => 'tar', 'TAR622G1429' => 'tar', 'TAR623G0734' => 'tar', 'TAR625G0441' => 'tar', 'TAR629G0976' => 'tar', 'TAR633G1195' => 'tar', 'TAR636G2660' => 'tar', 'THA.LOC104799440' => 'tha', 'THA.LOC104800966' => 'tha', 'THA.LOC104806559' => 'tha', 'THA.LOC104810765' => 'tha', 'THA.LOC104816266' => 'tha', 'THA.LOC104817419' => 'tha', 'THA.LOC104827021' => 'tha', 'Thecc.01G327400' => 'tca', 'Thecc.04G229200' => 'tca', 'Thecc.05G037400' => 'tca', 'Thecc.09G318600' => 'tca', 'Thecc.09G318700' => 'tca', 'Thhalv10006238m.g' => 'esa', 'Thhalv10014321m.g' => 'esa', 'Thhalv10014335m.g' => 'esa', 'Thhalv10015826m.g' => 'esa', 'Thhalv10017107m.g' => 'esa', 'Thhalv10017180m.g' => 'esa', 'Thhalv10029339m.g' => 'esa', 'TPR.G1699' => 'tpr', 'TPR.G23609' => 'tpr', 'TPR.G3081' => 'tpr', 'TPR.G40397' => 'tpr', 'TPR.G5522' => 'tpr', 'TPR.G5618' => 'tpr', 'TPR.G5626' => 'tpr', 'TWI09G1632' => 'twi', 'TWI23G1230' => 'twi', 'TWI53G1064' => 'twi', 'TWI59G0751' => 'twi', 'TWI74G0947' => 'twi', 'TWI77G0337' => 'twi', 'TWI79G1254' => 'twi', 'unitig_0.g2341' => 'ugi', 'unitig_26.g10006' => 'ugi', 'unitig_26.g10008' => 'ugi', 'unitig_26.g9192' => 'ugi', 'vmacro14547' => 'vma', 'vmacro15333' => 'vma', 'vmacro18743' => 'vma', 'vmacro20166' => 'vma', 'VMungo0331G0523' => 'vmu', 'VMungo0331G1202' => 'vmu', 'VMungo0720G1228' => 'vmu', 'VMungo0720G1514' => 'vmu', 'VMungo1080G0169' => 'vmu', 'VMungo1127G1475' => 'vmu', 'VMungo1383G1208' => 'vmu', 'VMungo1383G1698' => 'vmu', 'Zm00001eb012270' => 'zma', 'Zm00001eb054100' => 'zma', 'Zm00001eb063350' => 'zma', 'Zm00001eb328560' => 'zma', 'Zm00001eb342820' => 'zma', 'Zm00001eb362210' => 'zma', 'Zm00001eb397730' => 'zma', 'Zm00001eb399750' => 'zma' ) $gf_id = 'HOM05D000959' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000959' ) $data_identifier = 'HOM05D000959' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 5, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 5, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 10, 'mbi' => (int) 3, 'mco' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 2, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 3, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 11, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399750' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000959', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '622', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p07100' => 'bna', 'A03p11720' => 'bna', 'A05p08300' => 'bna', 'A05p13380' => 'bna', 'A09p54130' => 'bna', 'A10p16690' => 'bna', 'A10p16700' => 'bna', 'A10p33390' => 'bna', 'Aa31LG10G16020' => 'aar', 'Aa31LG1G11810' => 'aar', 'Aa31LG1G11830' => 'aar', 'Aa31LG1G22510' => 'aar', 'Aa31LG5G4890' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5793' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2310' => 'aag', 'Actinidia08499' => 'ach', 'Actinidia11262' => 'ach', 'Actinidia23926' => 'ach', 'Actinidia34420' => 'ach', 'Actinidia36970' => 'ach', 'Ah.02g111220' => 'amhyb', 'Ah.15g097750' => 'amhyb', 'AL4G27500' => 'aly', 'AL6G11470' => 'aly', 'AL8G35950' => 'aly', 'AL8G35960' => 'aly', 'AL8G35970' => 'aly', 'Aqoxy1G00912' => 'aox', 'Aqoxy2G02253' => 'aox', 'Aqoxy2G02411' => 'aox', 'Aqoxy5G00485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BZ66YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K8ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM4FUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6BF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HFV7XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25JBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0YNNV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MAKK6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P70IT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP2Z6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V61LZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YWP64R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3S9AI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7PGHH' => 'arhy', 'AT2G32150' => 'ath', 'AT3G62040' => 'ath', 'AT5G02230' => 'ath', 'AT5G59480' => 'ath', 'AT5G59490' => 'ath', 'ATR0332G060' => 'atr', 'ATR0559G190' => 'atr', 'ATR0693G294' => 'atr', 'Atru.chr3.3975' => 'acertr', 'Atru.chr3.3976' => 'acertr', 'Atru.chr3.3977' => 'acertr', 'Atru.chr4.2498' => 'acertr', 'Atru.chr5.838' => 'acertr', 'Atru.chr8.1990' => 'acertr', 'Atru.chr8.1991' => 'acertr', 'Atru.chr8.1992' => 'acertr', 'AUR62001759' => 'cqu', 'AUR62009545' => 'cqu', 'AUR62010474' => 'cqu', 'AUR62025820' => 'cqu', 'AUR62030422' => 'cqu', 'AUR62033605' => 'cqu', 'AUR62038615' => 'cqu', 'AUR62041347' => 'cqu', 'BcaB01g04574' => 'bca', 'BcaB02g09263' => 'bca', 'BcaB02g10453' => 'bca', 'BcaB05g22513' => 'bca', 'BcaB08g36253' => 'bca', 'BcaB08g36254' => 'bca', 'BcaC01g06519' => 'bca', 'BcaC02g11889' => 'bca', 'BcaC03g14010' => 'bca', 'BcaC03g18439' => 'bca', 'BcaC04g19765' => 'bca', 'BcaC09g48432' => 'bca', 'BcaNung07302' => 'bca', 'BolC2t06040H' => 'bol', 'BolC2t07346H' => 'bol', 'BolC3t13817H' => 'bol', 'BolC4t22625H' => 'bol', 'BolC4t23297H' => 'bol', 'BolC8t51278H' => 'bol', 'BolC9t58050H' => 'bol', 'BolC9t58051H' => 'bol', 'BolC9t60163H' => 'bol', 'BraA02t04712Z' => 'bra', 'BraA02t05791Z' => 'bra', 'BraA03t10483Z' => 'bra', 'BraA05t19795Z' => 'bra', 'BraA05t20276Z' => 'bra', 'BraA09t40827Z' => 'bra', 'BraA10t43750Z' => 'bra', 'BraA10t43751Z' => 'bra', 'BraA10t45370Z' => 'bra', 'C02p00400' => 'bna', 'C02p12460' => 'bna', 'C03p13680' => 'bna', 'C04p10270' => 'bna', 'C04p17500' => 'bna', 'C08p37010' => 'bna', 'C09p51880' => 'bna', 'C09p51890' => 'bna', 'C09p74300' => 'bna', 'CAN.G179.26' => 'can', 'CAN.G3384.1' => 'can', 'CAN.G394.68' => 'can', 'CAN.G907.13' => 'can', 'CANSAT11G0012' => 'cansat', 'CANSAT25G1586' => 'cansat', 'CANSAT35G0735' => 'cansat', 'CANSAT54G0556' => 'cansat', 'CANSAT64G0356' => 'cansat', 'CANSAT78G2042' => 'cansat', 'CARHR125920' => 'chi', 'CARHR131910' => 'chi', 'CARHR172390' => 'chi', 'CARHR211140' => 'chi', 'CARHR285850' => 'chi', 'CARHR285860' => 'chi', 'Carub.0004s1347' => 'cru', 'Carub.0004s1960' => 'cru', 'Carub.0005s2880' => 'cru', 'Carub.0006s0107' => 'cru', 'Carub.0008s2015' => 'cru', 'Carub.0008s2016' => 'cru', 'Carub.0008s2017' => 'cru', 'Ca_01315_v3' => 'car', 'Ca_05063_v3' => 'car', 'Ca_10231_v3' => 'car', 'Ca_10913_v3' => 'car', 'Ca_19156_v3' => 'car', 'Ca_23644_v3' => 'car', 'Ca_26735_v3' => 'car', 'Cc01_g13130' => 'ccan', 'Cc02_g21690' => 'ccan', 'Cc03_g03600' => 'ccan', 'Cc06_g02510' => 'ccan', 'CDE02G1265' => 'cde', 'CDE05G0415' => 'cde', 'CDE08G1082' => 'cde', 'Cfa005780' => 'cfa', 'Cfa011522' => 'cfa', 'Cfa011523' => 'cfa', 'Cfa015627' => 'cfa', 'Cfa017359' => 'cfa', 'Ciclev10005687m.g' => 'ccl', 'Ciclev10012173m.g' => 'ccl', 'Ciclev10021621m.g' => 'ccl', 'Ciclev10028968m.g' => 'ccl', 'Ciclev10029907m.g' => 'ccl', 'CiPaw.01G164800' => 'cil', 'CiPaw.07G083700' => 'cil', 'CiPaw.07G127000' => 'cil', 'CiPaw.07G136900' => 'cil', 'CiPaw.08G081700' => 'cil', 'CiPaw.09G194600' => 'cil', 'CiPaw.10G146500' => 'cil', 'CiPaw.13G091500' => 'cil', 'CiPaw.13G091600' => 'cil', 'ClCG00G003390' => 'cla', 'ClCG01G007220' => 'cla', 'ClCG03G001370' => 'cla', 'ClCG04G008100' => 'cla', 'ClCG06G006110' => 'cla', 'ClCG06G006130' => 'cla', 'ClCG10G021210' => 'cla', 'COL.COLO4_07648' => 'col', 'COL.COLO4_07650' => 'col', 'COL.COLO4_07651' => 'col', 'COL.COLO4_14780' => 'col', 'COL.COLO4_18546' => 'col', 'COL.COLO4_18547' => 'col', 'COL.COLO4_23103' => 'col', 'COL.COLO4_30419' => 'col', 'COL.COLO4_34232' => 'col', 'Cpa.g.sc169.20' => 'cpa', 'Cpa.g.sc57.45' => 'cpa', 'Cpa.g.sc58.124' => 'cpa', 'Cpa.g.sc58.125' => 'cpa', 'Cpa.g.sc81.118' => 'cpa', 'Cpa.g.sc81.119' => 'cpa', 'Cre12.g524700' => 'cre', 'CsaV3_1G034430' => 'csa', 'CsaV3_1G034440' => 'csa', 'CsaV3_1G034450' => 'csa', 'CsaV3_3G034830' => 'csa', 'CsaV3_4G025090' => 'csa', 'CsaV3_5G018660' => 'csa', 'CsaV3_6G038160' => 'csa', 'CSS0003447' => 'camsi', 'CSS0017840' => 'camsi', 'CSS0019260' => 'camsi', 'CSS0040375' => 'camsi', 'CSS0042533' => 'camsi', 'DCAR_005960' => 'dca', 'DCAR_012104' => 'dca', 'DCAR_012105' => 'dca', 'DCAR_012293' => 'dca', 'DCAR_015632' => 'dca', 'DCAR_024602' => 'dca', 'DCAR_028752' => 'dca', 'Dinv06261' => 'din', 'Dinv13982' => 'din', 'Dinv17029' => 'din', 'Dinv18463' => 'din', 'Dinv33181' => 'din', 'Dinv35585' => 'din', 'Dinv37161' => 'din', 'Dinv42977' => 'din', 'Dinv43122' => 'din', 'Dinv44517' => 'din', 'Duzib093G0256' => 'dzi', 'Duzib106G1254' => 'dzi', 'Duzib128G1789' => 'dzi', 'Duzib133G0633' => 'dzi', 'Duzib138G0510' => 'dzi', 'Duzib150G1084' => 'dzi', 'Duzib168G0488' => 'dzi', 'Duzib168G1523' => 'dzi', 'Duzib170G0133' => 'dzi', 'ECA234G1433' => 'eca', 'ECA236G1432' => 'eca', 'ECA236G2256' => 'eca', 'ECA236G2365' => 'eca', 'ECA236G4830' => 'eca', 'ECA248G1505' => 'eca', 'EL10Ac3g06431' => 'bvu', 'EL10Ac5g12577' => 'bvu', 'EL10Ac6g13533' => 'bvu', 'EL10Ac7g16045' => 'bvu', 'Eucgr.A01281' => 'egr', 'Eucgr.B02326' => 'egr', 'Eucgr.H03532' => 'egr', 'Eucgr.K00553' => 'egr', 'Eucgr.K03116' => 'egr', 'FAN02G3963' => 'fan', 'FAN05G0438' => 'fan', 'FAN09G2434' => 'fan', 'FAN12G3984' => 'fan', 'FAN14G0798' => 'fan', 'FAN17G0652' => 'fan', 'FAN19G1988' => 'fan', 'FAN22G0632' => 'fan', 'FAN23G0387' => 'fan', 'FAN26G1323' => 'fan', 'FAN28G0666' => 'fan', 'FvH4_1g26080' => 'fve', 'FvH4_3g36780' => 'fve', 'FvH4_4g15270' => 'fve', 'FvH4_6g13490' => 'fve', 'Glyma.01G098700' => 'gma', 'Glyma.03G065900' => 'gma', 'Glyma.03G073754' => 'gma', 'Glyma.03G073758' => 'gma', 'Glyma.03G083200' => 'gma', 'Glyma.03G225500' => 'gma', 'Glyma.05G037766' => 'gma', 'Glyma.07G133500' => 'gma', 'Glyma.10G139400' => 'gma', 'Glyma.10G248900' => 'gma', 'Glyma.11G137800' => 'gma', 'Glyma.12G061300' => 'gma', 'Glyma.13G337900' => 'gma', 'Glyma.15G036600' => 'gma', 'Glyma.18G182800' => 'gma', 'Glyma.19G222500' => 'gma', 'Glyma.20G144800' => 'gma', 'Gohir.A01G222000' => 'ghi', 'Gohir.A03G044000' => 'ghi', 'Gohir.A03G044100' => 'ghi', 'Gohir.A04G083100' => 'ghi', 'Gohir.A07G127200' => 'ghi', 'Gohir.A07G132400' => 'ghi', 'Gohir.A08G000700' => 'ghi', 'Gohir.A11G327300' => 'ghi', 'Gohir.D01G211500' => 'ghi', 'Gohir.D03G123400' => 'ghi', 'Gohir.D03G123500' => 'ghi', 'Gohir.D04G121800' => 'ghi', 'Gohir.D07G131500' => 'ghi', 'Gohir.D07G136600' => 'ghi', 'Gohir.D08G011600' => 'ghi', 'Gohir.D11G346200' => 'ghi', 'Gorai.001G142800' => 'gra', 'Gorai.001G148700' => 'gra', 'Gorai.002G257300' => 'gra', 'Gorai.003G130000' => 'gra', 'Gorai.003G130100' => 'gra', 'Gorai.004G005300' => 'gra', 'Gorai.007G376500' => 'gra', 'Gorai.012G104700' => 'gra', 'GSVIVG01017946001' => 'vvi', 'GSVIVG01024928001' => 'vvi', 'GSVIVG01028227001' => 'vvi', 'GSVIVG01034151001' => 'vvi', 'HanXRQChr05g0135031' => 'han', 'HanXRQChr05g0135041' => 'han', 'HanXRQChr05g0140021' => 'han', 'HanXRQChr06g0178981' => 'han', 'HanXRQChr07g0188251' => 'han', 'HanXRQChr08g0235311' => 'han', 'HanXRQChr09g0271011' => 'han', 'HanXRQChr10g0293321' => 'han', 'HanXRQChr13g0388171' => 'han', 'Haze_00916' => 'cav', 'Haze_05063' => 'cav', 'Haze_20814' => 'cav', 'Haze_24128' => 'cav', 'Hma1.2p1_0745F.1_g212010' => 'hma', 'Hma1.2p1_0757F.1_g213260' => 'hma', 'Hma1.2p1_0936F.1_g238840' => 'hma', 'Hma1.2p1_1735F.1_g299890' => 'hma', 'Hma1.2p1_1861F.1_g305685' => 'hma', 'HPP92_003397' => 'vpl', 'HPP92_012597' => 'vpl', 'HPP92_015520' => 'vpl', 'HPP92_015539' => 'vpl', 'HPP92_020373' => 'vpl', 'Hund04938' => 'sun', 'Hund10677' => 'sun', 'Hund11033' => 'sun', 'Hund12155' => 'sun', 'Lalb_Chr01g0022551' => 'lal', 'Lalb_Chr03g0042341' => 'lal', 'Lalb_Chr07g0192931' => 'lal', 'Lalb_Chr12g0209551' => 'lal', 'Lalb_Chr19g0125251' => 'lal', 'Lalb_Chr19g0137891' => 'lal', 'Lalb_Chr21g0304641' => 'lal', 'Lalb_Chr21g0309881' => 'lal', 'Lj1A5T12' => 'lonja', 'Lj1C148G10' => 'lonja', 'Lj2A93T83' => 'lonja', 'Lj3A738G68' => 'lonja', 'Lj3C966T1' => 'lonja', 'Lj3g0018958' => 'lja', 'Lj3g0021831' => 'lja', 'Lj3g0025443' => 'lja', 'Lj4g0026809' => 'lja', 'Lj5g0012558' => 'lja', 'Lj5g0021586' => 'lja', 'Lsat_1_v5_gn_5_156840' => 'lsa', 'Lsat_1_v5_gn_8_73460' => 'lsa', 'Lsat_1_v5_gn_8_73481' => 'lsa', 'Lsat_1_v5_gn_9_31601' => 'lsa', 'Lsat_1_v5_gn_9_77320' => 'lsa', 'Manes.01G171300' => 'mes', 'Manes.01G171400' => 'mes', 'Manes.01G236100' => 'mes', 'Manes.02G130500' => 'mes', 'Manes.02G130600' => 'mes', 'Manes.03G180200' => 'mes', 'Manes.05G007000' => 'mes', 'Manes.08G084400' => 'mes', 'Manes.09G092600' => 'mes', 'Manes.15G027900' => 'mes', 'MBI04_g40948_MAGBIO' => 'mbi', 'MBI14_g12123_MAGBIO' => 'mbi', 'MBI18_g28915_MAGBIO' => 'mbi', 'MCO09G053' => 'mco', 'MCO11G782' => 'mco', 'MCO15G215' => 'mco', 'MD03G1088500' => 'mdo', 'MD03G1088600' => 'mdo', 'MD04G1130800' => 'mdo', 'MD09G1291700' => 'mdo', 'MD11G1097500' => 'mdo', 'MD11G1097600' => 'mdo', 'MD12G1143900' => 'mdo', 'MD13G1191400' => 'mdo', 'MD16G1191500' => 'mdo', 'Medtr1g085570' => 'mtr', 'Medtr1g104610' => 'mtr', 'Medtr2g097520' => 'mtr', 'Medtr4g021800' => 'mtr', 'Medtr4g021825' => 'mtr', 'Medtr4g064270' => 'mtr', 'Medtr4g064380' => 'mtr', 'Medtr7g062150' => 'mtr', 'MELO3C003138.2' => 'cme', 'MELO3C005187.2' => 'cme', 'MELO3C009252.2' => 'cme', 'MELO3C014481.2' => 'cme', 'MELO3C020616.2' => 'cme', 'MELO3C020617.2' => 'cme', 'MELO3C020618.2' => 'cme', 'Migut.G00328' => 'egut', 'Migut.J00320' => 'egut', 'Migut.L01000' => 'egut', 'Migut.L01953' => 'egut', 'MSTRG.10253' => 'ama', 'MSTRG.19077' => 'ama', 'MSTRG.26780' => 'ama', 'MSTRG.4023' => 'ama', 'MSTRG.5655' => 'ama', 'MSTRG.9992' => 'ama', 'Nitab4.5_0000043g0310' => 'nta', 'Nitab4.5_0000463g0080' => 'nta', 'Nitab4.5_0000705g0170' => 'nta', 'Nitab4.5_0001326g0060' => 'nta', 'Nitab4.5_0001628g0030' => 'nta', 'Nitab4.5_0002103g0110' => 'nta', 'Nitab4.5_0002946g0030' => 'nta', 'Nitab4.5_0004639g0030' => 'nta', 'Nn2g11149' => 'nnu', 'Nn2g13389' => 'nnu', 'Nn4g25326' => 'nnu', 'Nn4g26290' => 'nnu', 'Nn5g29865' => 'nnu', 'Oeu004163.1' => 'oeu', 'Oeu006901.1' => 'oeu', 'Oeu010096.1' => 'oeu', 'Oeu024340.1' => 'oeu', 'Oeu048369.1' => 'oeu', 'Os01g0973000' => 'osa', 'Os03g0273800' => 'osa', 'Os03g0701200' => 'osa', 'Os03g0834050' => 'osa', 'Os07g0634400' => 'osa', 'Peaxi162Scf00092g01414' => 'pax', 'Peaxi162Scf00165g00818' => 'pax', 'Peaxi162Scf00309g00516' => 'pax', 'Peaxi162Scf00774g00218' => 'pax', 'PGR004G1824' => 'pgr', 'PGR004G2606' => 'pgr', 'PGR031G2716' => 'pgr', 'PGR102G2460' => 'pgr', 'PGR142G2599' => 'pgr', 'PGSC0003DMG400000843' => 'stu', 'PGSC0003DMG400008829' => 'stu', 'PGSC0003DMG400030418' => 'stu', 'PGSC0003DMG400031834' => 'stu', 'PGSC0003DMG401028300' => 'stu', 'PGSC0003DMG402028300' => 'stu', 'Phvul.001G219300' => 'pvu', 'Phvul.007G056000' => 'pvu', 'Phvul.007G208000' => 'pvu', 'Phvul.008G119500' => 'pvu', 'Phvul.010G011200' => 'pvu', 'Phvul.010G014800' => 'pvu', 'Phvul.011G062900' => 'pvu', 'Phvul.L007043' => 'pvu', 'Potri.001G242300' => 'ptr', 'Potri.002G185300' => 'ptr', 'Potri.006G086900' => 'ptr', 'Potri.008G151700' => 'ptr', 'Potri.009G033500' => 'ptr', 'Potri.010G089300' => 'ptr', 'Potri.014G110800' => 'ptr', 'Pp3c27_8130' => 'ppa', 'Pp3c6_27410' => 'ppa', 'PRCOL_00001659' => 'pco', 'PRCOL_00001927' => 'pco', 'PRCOL_00003649' => 'pco', 'Prupe.1G011600' => 'ppe', 'Prupe.3G000800' => 'ppe', 'Prupe.3G001100' => 'ppe', 'Prupe.6G072700' => 'ppe', 'Prupe.6G072800' => 'ppe', 'Prupe.6G257300' => 'ppe', 'Prupe.8G033000' => 'ppe', 'Psat0s2633g0080' => 'psa', 'Psat0s3396g0080' => 'psa', 'Psat0s3396g0200' => 'psa', 'Psat3g139080' => 'psa', 'Psat5g285080' => 'psa', 'Psat6g157760' => 'psa', 'Psat6g208440' => 'psa', 'Psat7g215320' => 'psa', 'Psat7g215400' => 'psa', 'Psat7g235600' => 'psa', 'Psat7g235760' => 'psa', 'PSO063G4603' => 'pso', 'PSO210G0182' => 'pso', 'PSO210G0196' => 'pso', 'PSO339G0394' => 'pso', 'PSO339G4127' => 'pso', 'PSO513G0064' => 'pso', 'PSO761G0079' => 'pso', 'QL01p031003' => 'qlo', 'QL01p031078' => 'qlo', 'QL06p003004' => 'qlo', 'QL07p048731' => 'qlo', 'QL09p037427' => 'qlo', 'RcHm_v2.0_Chr3g0466361' => 'rch', 'RcHm_v2.0_Chr3g0485571' => 'rch', 'RcHm_v2.0_Chr4g0416551' => 'rch', 'RcHm_v2.0_Chr5g0065831' => 'rch', 'Rhsim01G0230500' => 'rsi', 'Rhsim05G0194000' => 'rsi', 'Rhsim08G0250400' => 'rsi', 'Sabra02G0131000' => 'sbr', 'Sabra06G0066300' => 'sbr', 'Sabra08G0115500' => 'sbr', 'Sabra09G0023900' => 'sbr', 'Sabra10G0054000' => 'sbr', 'Sabra14G0081500' => 'sbr', 'Sabra16G0147100' => 'sbr', 'SalBow2G2957' => 'sbo', 'SalBow4G3320' => 'sbo', 'SalBow8G1894' => 'sbo', 'Sc07g0007950' => 'sci', 'Sc12g0001360' => 'sci', 'Sc13g0004330' => 'sci', 'Sc20g0005010' => 'sci', 'Sed0000361' => 'sed', 'Sed0001706' => 'sed', 'Sed0002422' => 'sed', 'Sed0004029' => 'sed', 'Sed0004602' => 'sed', 'Sed0004943' => 'sed', 'Sed0008646' => 'sed', 'Sed0023313' => 'sed', 'Sed0024843' => 'sed', 'SEGI_00081' => 'sgi', 'SEGI_00947' => 'sgi', 'SEGI_04046' => 'sgi', 'SEGI_06880' => 'sgi', 'SEGI_09736' => 'sgi', 'SEGI_12741' => 'sgi', 'SEGI_14530' => 'sgi', 'SEGI_20705' => 'sgi', 'SEGI_26088' => 'sgi', 'SEGI_28323' => 'sgi', 'SEGI_33343' => 'sgi', 'SGA_v2.0_scaffold126G33775' => 'sas', 'SGA_v2.0_scaffold2G01337' => 'sas', 'SGA_v2.0_scaffold38G15006' => 'sas', 'SGA_v2.0_scaffold39G15264' => 'sas', 'SGA_v2.0_scaffold453G51880' => 'sas', 'SHI12696' => 'shi', 'SMO367G1096' => 'smo', 'Solyc01g068630.3' => 'sly', 'Solyc05g011880.3' => 'sly', 'Solyc06g076300.3' => 'sly', 'Solyc09g010940.4' => 'sly', 'Solyc09g075890.3' => 'sly', 'Sopen01g030560' => 'spe', 'Sopen05g006630' => 'spe', 'Sopen06g032720' => 'spe', 'Sopen09g005660' => 'spe', 'Sopen09g030690' => 'spe', 'Sp4g14540' => 'spa', 'Sp4g20030' => 'spa', 'Sp5g01320' => 'spa', 'Sp6g21170' => 'spa', 'Sp6g21180' => 'spa', 'Sp6g21190' => 'spa', 'Sp6g40220' => 'spa', 'TAR362G0122' => 'tar', 'TAR362G1338' => 'tar', 'TAR369G0590' => 'tar', 'TAR371G0824' => 'tar', 'TAR622G1429' => 'tar', 'TAR623G0734' => 'tar', 'TAR625G0441' => 'tar', 'TAR629G0976' => 'tar', 'TAR633G1195' => 'tar', 'TAR636G2660' => 'tar', 'THA.LOC104799440' => 'tha', 'THA.LOC104800966' => 'tha', 'THA.LOC104806559' => 'tha', 'THA.LOC104810765' => 'tha', 'THA.LOC104816266' => 'tha', 'THA.LOC104817419' => 'tha', 'THA.LOC104827021' => 'tha', 'Thecc.01G327400' => 'tca', 'Thecc.04G229200' => 'tca', 'Thecc.05G037400' => 'tca', 'Thecc.09G318600' => 'tca', 'Thecc.09G318700' => 'tca', 'Thhalv10006238m.g' => 'esa', 'Thhalv10014321m.g' => 'esa', 'Thhalv10014335m.g' => 'esa', 'Thhalv10015826m.g' => 'esa', 'Thhalv10017107m.g' => 'esa', 'Thhalv10017180m.g' => 'esa', 'Thhalv10029339m.g' => 'esa', 'TPR.G1699' => 'tpr', 'TPR.G23609' => 'tpr', 'TPR.G3081' => 'tpr', 'TPR.G40397' => 'tpr', 'TPR.G5522' => 'tpr', 'TPR.G5618' => 'tpr', 'TPR.G5626' => 'tpr', 'TWI09G1632' => 'twi', 'TWI23G1230' => 'twi', 'TWI53G1064' => 'twi', 'TWI59G0751' => 'twi', 'TWI74G0947' => 'twi', 'TWI77G0337' => 'twi', 'TWI79G1254' => 'twi', 'unitig_0.g2341' => 'ugi', 'unitig_26.g10006' => 'ugi', 'unitig_26.g10008' => 'ugi', 'unitig_26.g9192' => 'ugi', 'vmacro14547' => 'vma', 'vmacro15333' => 'vma', 'vmacro18743' => 'vma', 'vmacro20166' => 'vma', 'VMungo0331G0523' => 'vmu', 'VMungo0331G1202' => 'vmu', 'VMungo0720G1228' => 'vmu', 'VMungo0720G1514' => 'vmu', 'VMungo1080G0169' => 'vmu', 'VMungo1127G1475' => 'vmu', 'VMungo1383G1208' => 'vmu', 'VMungo1383G1698' => 'vmu', 'Zm00001eb012270' => 'zma', 'Zm00001eb054100' => 'zma', 'Zm00001eb063350' => 'zma', 'Zm00001eb328560' => 'zma', 'Zm00001eb342820' => 'zma', 'Zm00001eb362210' => 'zma', 'Zm00001eb397730' => 'zma', 'Zm00001eb399750' => 'zma' ), 'gf_id' => 'HOM05D000959', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000959' ), 'data_identifier' => 'HOM05D000959', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000959', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '622', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p07100' => 'bna', 'A03p11720' => 'bna', 'A05p08300' => 'bna', 'A05p13380' => 'bna', 'A09p54130' => 'bna', 'A10p16690' => 'bna', 'A10p16700' => 'bna', 'A10p33390' => 'bna', 'Aa31LG10G16020' => 'aar', 'Aa31LG1G11810' => 'aar', 'Aa31LG1G11830' => 'aar', 'Aa31LG1G22510' => 'aar', 'Aa31LG5G4890' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5793' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2310' => 'aag', 'Actinidia08499' => 'ach', 'Actinidia11262' => 'ach', 'Actinidia23926' => 'ach', 'Actinidia34420' => 'ach', 'Actinidia36970' => 'ach', 'Ah.02g111220' => 'amhyb', 'Ah.15g097750' => 'amhyb', 'AL4G27500' => 'aly', 'AL6G11470' => 'aly', 'AL8G35950' => 'aly', 'AL8G35960' => 'aly', 'AL8G35970' => 'aly', 'Aqoxy1G00912' => 'aox', 'Aqoxy2G02253' => 'aox', 'Aqoxy2G02411' => 'aox', 'Aqoxy5G00485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BZ66YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K8ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM4FUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6BF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HFV7XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25JBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0YNNV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MAKK6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P70IT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP2Z6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V61LZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YWP64R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3S9AI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7PGHH' => 'arhy', 'AT2G32150' => 'ath', 'AT3G62040' => 'ath', 'AT5G02230' => 'ath', 'AT5G59480' => 'ath', 'AT5G59490' => 'ath', 'ATR0332G060' => 'atr', 'ATR0559G190' => 'atr', 'ATR0693G294' => 'atr', 'Atru.chr3.3975' => 'acertr', 'Atru.chr3.3976' => 'acertr', 'Atru.chr3.3977' => 'acertr', 'Atru.chr4.2498' => 'acertr', 'Atru.chr5.838' => 'acertr', 'Atru.chr8.1990' => 'acertr', 'Atru.chr8.1991' => 'acertr', 'Atru.chr8.1992' => 'acertr', 'AUR62001759' => 'cqu', 'AUR62009545' => 'cqu', 'AUR62010474' => 'cqu', 'AUR62025820' => 'cqu', 'AUR62030422' => 'cqu', 'AUR62033605' => 'cqu', 'AUR62038615' => 'cqu', 'AUR62041347' => 'cqu', 'BcaB01g04574' => 'bca', 'BcaB02g09263' => 'bca', 'BcaB02g10453' => 'bca', 'BcaB05g22513' => 'bca', 'BcaB08g36253' => 'bca', 'BcaB08g36254' => 'bca', 'BcaC01g06519' => 'bca', 'BcaC02g11889' => 'bca', 'BcaC03g14010' => 'bca', 'BcaC03g18439' => 'bca', 'BcaC04g19765' => 'bca', 'BcaC09g48432' => 'bca', 'BcaNung07302' => 'bca', 'BolC2t06040H' => 'bol', 'BolC2t07346H' => 'bol', 'BolC3t13817H' => 'bol', 'BolC4t22625H' => 'bol', 'BolC4t23297H' => 'bol', 'BolC8t51278H' => 'bol', 'BolC9t58050H' => 'bol', 'BolC9t58051H' => 'bol', 'BolC9t60163H' => 'bol', 'BraA02t04712Z' => 'bra', 'BraA02t05791Z' => 'bra', 'BraA03t10483Z' => 'bra', 'BraA05t19795Z' => 'bra', 'BraA05t20276Z' => 'bra', 'BraA09t40827Z' => 'bra', 'BraA10t43750Z' => 'bra', 'BraA10t43751Z' => 'bra', 'BraA10t45370Z' => 'bra', 'C02p00400' => 'bna', 'C02p12460' => 'bna', 'C03p13680' => 'bna', 'C04p10270' => 'bna', 'C04p17500' => 'bna', 'C08p37010' => 'bna', 'C09p51880' => 'bna', 'C09p51890' => 'bna', 'C09p74300' => 'bna', 'CAN.G179.26' => 'can', 'CAN.G3384.1' => 'can', 'CAN.G394.68' => 'can', 'CAN.G907.13' => 'can', 'CANSAT11G0012' => 'cansat', 'CANSAT25G1586' => 'cansat', 'CANSAT35G0735' => 'cansat', 'CANSAT54G0556' => 'cansat', 'CANSAT64G0356' => 'cansat', 'CANSAT78G2042' => 'cansat', 'CARHR125920' => 'chi', 'CARHR131910' => 'chi', 'CARHR172390' => 'chi', 'CARHR211140' => 'chi', 'CARHR285850' => 'chi', 'CARHR285860' => 'chi', 'Carub.0004s1347' => 'cru', 'Carub.0004s1960' => 'cru', 'Carub.0005s2880' => 'cru', 'Carub.0006s0107' => 'cru', 'Carub.0008s2015' => 'cru', 'Carub.0008s2016' => 'cru', 'Carub.0008s2017' => 'cru', 'Ca_01315_v3' => 'car', 'Ca_05063_v3' => 'car', 'Ca_10231_v3' => 'car', 'Ca_10913_v3' => 'car', 'Ca_19156_v3' => 'car', 'Ca_23644_v3' => 'car', 'Ca_26735_v3' => 'car', 'Cc01_g13130' => 'ccan', 'Cc02_g21690' => 'ccan', 'Cc03_g03600' => 'ccan', 'Cc06_g02510' => 'ccan', 'CDE02G1265' => 'cde', 'CDE05G0415' => 'cde', 'CDE08G1082' => 'cde', 'Cfa005780' => 'cfa', 'Cfa011522' => 'cfa', 'Cfa011523' => 'cfa', 'Cfa015627' => 'cfa', 'Cfa017359' => 'cfa', 'Ciclev10005687m.g' => 'ccl', 'Ciclev10012173m.g' => 'ccl', 'Ciclev10021621m.g' => 'ccl', 'Ciclev10028968m.g' => 'ccl', 'Ciclev10029907m.g' => 'ccl', 'CiPaw.01G164800' => 'cil', 'CiPaw.07G083700' => 'cil', 'CiPaw.07G127000' => 'cil', 'CiPaw.07G136900' => 'cil', 'CiPaw.08G081700' => 'cil', 'CiPaw.09G194600' => 'cil', 'CiPaw.10G146500' => 'cil', 'CiPaw.13G091500' => 'cil', 'CiPaw.13G091600' => 'cil', 'ClCG00G003390' => 'cla', 'ClCG01G007220' => 'cla', 'ClCG03G001370' => 'cla', 'ClCG04G008100' => 'cla', 'ClCG06G006110' => 'cla', 'ClCG06G006130' => 'cla', 'ClCG10G021210' => 'cla', 'COL.COLO4_07648' => 'col', 'COL.COLO4_07650' => 'col', 'COL.COLO4_07651' => 'col', 'COL.COLO4_14780' => 'col', 'COL.COLO4_18546' => 'col', 'COL.COLO4_18547' => 'col', 'COL.COLO4_23103' => 'col', 'COL.COLO4_30419' => 'col', 'COL.COLO4_34232' => 'col', 'Cpa.g.sc169.20' => 'cpa', 'Cpa.g.sc57.45' => 'cpa', 'Cpa.g.sc58.124' => 'cpa', 'Cpa.g.sc58.125' => 'cpa', 'Cpa.g.sc81.118' => 'cpa', 'Cpa.g.sc81.119' => 'cpa', 'Cre12.g524700' => 'cre', 'CsaV3_1G034430' => 'csa', 'CsaV3_1G034440' => 'csa', 'CsaV3_1G034450' => 'csa', 'CsaV3_3G034830' => 'csa', 'CsaV3_4G025090' => 'csa', 'CsaV3_5G018660' => 'csa', 'CsaV3_6G038160' => 'csa', 'CSS0003447' => 'camsi', 'CSS0017840' => 'camsi', 'CSS0019260' => 'camsi', 'CSS0040375' => 'camsi', 'CSS0042533' => 'camsi', 'DCAR_005960' => 'dca', 'DCAR_012104' => 'dca', 'DCAR_012105' => 'dca', 'DCAR_012293' => 'dca', 'DCAR_015632' => 'dca', 'DCAR_024602' => 'dca', 'DCAR_028752' => 'dca', 'Dinv06261' => 'din', 'Dinv13982' => 'din', 'Dinv17029' => 'din', 'Dinv18463' => 'din', 'Dinv33181' => 'din', 'Dinv35585' => 'din', 'Dinv37161' => 'din', 'Dinv42977' => 'din', 'Dinv43122' => 'din', 'Dinv44517' => 'din', 'Duzib093G0256' => 'dzi', 'Duzib106G1254' => 'dzi', 'Duzib128G1789' => 'dzi', 'Duzib133G0633' => 'dzi', 'Duzib138G0510' => 'dzi', 'Duzib150G1084' => 'dzi', 'Duzib168G0488' => 'dzi', 'Duzib168G1523' => 'dzi', 'Duzib170G0133' => 'dzi', 'ECA234G1433' => 'eca', 'ECA236G1432' => 'eca', 'ECA236G2256' => 'eca', 'ECA236G2365' => 'eca', 'ECA236G4830' => 'eca', 'ECA248G1505' => 'eca', 'EL10Ac3g06431' => 'bvu', 'EL10Ac5g12577' => 'bvu', 'EL10Ac6g13533' => 'bvu', 'EL10Ac7g16045' => 'bvu', 'Eucgr.A01281' => 'egr', 'Eucgr.B02326' => 'egr', 'Eucgr.H03532' => 'egr', 'Eucgr.K00553' => 'egr', 'Eucgr.K03116' => 'egr', 'FAN02G3963' => 'fan', 'FAN05G0438' => 'fan', 'FAN09G2434' => 'fan', 'FAN12G3984' => 'fan', 'FAN14G0798' => 'fan', 'FAN17G0652' => 'fan', 'FAN19G1988' => 'fan', 'FAN22G0632' => 'fan', 'FAN23G0387' => 'fan', 'FAN26G1323' => 'fan', 'FAN28G0666' => 'fan', 'FvH4_1g26080' => 'fve', 'FvH4_3g36780' => 'fve', 'FvH4_4g15270' => 'fve', 'FvH4_6g13490' => 'fve', 'Glyma.01G098700' => 'gma', 'Glyma.03G065900' => 'gma', 'Glyma.03G073754' => 'gma', 'Glyma.03G073758' => 'gma', 'Glyma.03G083200' => 'gma', 'Glyma.03G225500' => 'gma', 'Glyma.05G037766' => 'gma', 'Glyma.07G133500' => 'gma', 'Glyma.10G139400' => 'gma', 'Glyma.10G248900' => 'gma', 'Glyma.11G137800' => 'gma', 'Glyma.12G061300' => 'gma', 'Glyma.13G337900' => 'gma', 'Glyma.15G036600' => 'gma', 'Glyma.18G182800' => 'gma', 'Glyma.19G222500' => 'gma', 'Glyma.20G144800' => 'gma', 'Gohir.A01G222000' => 'ghi', 'Gohir.A03G044000' => 'ghi', 'Gohir.A03G044100' => 'ghi', 'Gohir.A04G083100' => 'ghi', 'Gohir.A07G127200' => 'ghi', 'Gohir.A07G132400' => 'ghi', 'Gohir.A08G000700' => 'ghi', 'Gohir.A11G327300' => 'ghi', 'Gohir.D01G211500' => 'ghi', 'Gohir.D03G123400' => 'ghi', 'Gohir.D03G123500' => 'ghi', 'Gohir.D04G121800' => 'ghi', 'Gohir.D07G131500' => 'ghi', 'Gohir.D07G136600' => 'ghi', 'Gohir.D08G011600' => 'ghi', 'Gohir.D11G346200' => 'ghi', 'Gorai.001G142800' => 'gra', 'Gorai.001G148700' => 'gra', 'Gorai.002G257300' => 'gra', 'Gorai.003G130000' => 'gra', 'Gorai.003G130100' => 'gra', 'Gorai.004G005300' => 'gra', 'Gorai.007G376500' => 'gra', 'Gorai.012G104700' => 'gra', 'GSVIVG01017946001' => 'vvi', 'GSVIVG01024928001' => 'vvi', 'GSVIVG01028227001' => 'vvi', 'GSVIVG01034151001' => 'vvi', 'HanXRQChr05g0135031' => 'han', 'HanXRQChr05g0135041' => 'han', 'HanXRQChr05g0140021' => 'han', 'HanXRQChr06g0178981' => 'han', 'HanXRQChr07g0188251' => 'han', 'HanXRQChr08g0235311' => 'han', 'HanXRQChr09g0271011' => 'han', 'HanXRQChr10g0293321' => 'han', 'HanXRQChr13g0388171' => 'han', 'Haze_00916' => 'cav', 'Haze_05063' => 'cav', 'Haze_20814' => 'cav', 'Haze_24128' => 'cav', 'Hma1.2p1_0745F.1_g212010' => 'hma', 'Hma1.2p1_0757F.1_g213260' => 'hma', 'Hma1.2p1_0936F.1_g238840' => 'hma', 'Hma1.2p1_1735F.1_g299890' => 'hma', 'Hma1.2p1_1861F.1_g305685' => 'hma', 'HPP92_003397' => 'vpl', 'HPP92_012597' => 'vpl', 'HPP92_015520' => 'vpl', 'HPP92_015539' => 'vpl', 'HPP92_020373' => 'vpl', 'Hund04938' => 'sun', 'Hund10677' => 'sun', 'Hund11033' => 'sun', 'Hund12155' => 'sun', 'Lalb_Chr01g0022551' => 'lal', 'Lalb_Chr03g0042341' => 'lal', 'Lalb_Chr07g0192931' => 'lal', 'Lalb_Chr12g0209551' => 'lal', 'Lalb_Chr19g0125251' => 'lal', 'Lalb_Chr19g0137891' => 'lal', 'Lalb_Chr21g0304641' => 'lal', 'Lalb_Chr21g0309881' => 'lal', 'Lj1A5T12' => 'lonja', 'Lj1C148G10' => 'lonja', 'Lj2A93T83' => 'lonja', 'Lj3A738G68' => 'lonja', 'Lj3C966T1' => 'lonja', 'Lj3g0018958' => 'lja', 'Lj3g0021831' => 'lja', 'Lj3g0025443' => 'lja', 'Lj4g0026809' => 'lja', 'Lj5g0012558' => 'lja', 'Lj5g0021586' => 'lja', 'Lsat_1_v5_gn_5_156840' => 'lsa', 'Lsat_1_v5_gn_8_73460' => 'lsa', 'Lsat_1_v5_gn_8_73481' => 'lsa', 'Lsat_1_v5_gn_9_31601' => 'lsa', 'Lsat_1_v5_gn_9_77320' => 'lsa', 'Manes.01G171300' => 'mes', 'Manes.01G171400' => 'mes', 'Manes.01G236100' => 'mes', 'Manes.02G130500' => 'mes', 'Manes.02G130600' => 'mes', 'Manes.03G180200' => 'mes', 'Manes.05G007000' => 'mes', 'Manes.08G084400' => 'mes', 'Manes.09G092600' => 'mes', 'Manes.15G027900' => 'mes', 'MBI04_g40948_MAGBIO' => 'mbi', 'MBI14_g12123_MAGBIO' => 'mbi', 'MBI18_g28915_MAGBIO' => 'mbi', 'MCO09G053' => 'mco', 'MCO11G782' => 'mco', 'MCO15G215' => 'mco', 'MD03G1088500' => 'mdo', 'MD03G1088600' => 'mdo', 'MD04G1130800' => 'mdo', 'MD09G1291700' => 'mdo', 'MD11G1097500' => 'mdo', 'MD11G1097600' => 'mdo', 'MD12G1143900' => 'mdo', 'MD13G1191400' => 'mdo', 'MD16G1191500' => 'mdo', 'Medtr1g085570' => 'mtr', 'Medtr1g104610' => 'mtr', 'Medtr2g097520' => 'mtr', 'Medtr4g021800' => 'mtr', 'Medtr4g021825' => 'mtr', 'Medtr4g064270' => 'mtr', 'Medtr4g064380' => 'mtr', 'Medtr7g062150' => 'mtr', 'MELO3C003138.2' => 'cme', 'MELO3C005187.2' => 'cme', 'MELO3C009252.2' => 'cme', 'MELO3C014481.2' => 'cme', 'MELO3C020616.2' => 'cme', 'MELO3C020617.2' => 'cme', 'MELO3C020618.2' => 'cme', 'Migut.G00328' => 'egut', 'Migut.J00320' => 'egut', 'Migut.L01000' => 'egut', 'Migut.L01953' => 'egut', 'MSTRG.10253' => 'ama', 'MSTRG.19077' => 'ama', 'MSTRG.26780' => 'ama', 'MSTRG.4023' => 'ama', 'MSTRG.5655' => 'ama', 'MSTRG.9992' => 'ama', 'Nitab4.5_0000043g0310' => 'nta', 'Nitab4.5_0000463g0080' => 'nta', 'Nitab4.5_0000705g0170' => 'nta', 'Nitab4.5_0001326g0060' => 'nta', 'Nitab4.5_0001628g0030' => 'nta', 'Nitab4.5_0002103g0110' => 'nta', 'Nitab4.5_0002946g0030' => 'nta', 'Nitab4.5_0004639g0030' => 'nta', 'Nn2g11149' => 'nnu', 'Nn2g13389' => 'nnu', 'Nn4g25326' => 'nnu', 'Nn4g26290' => 'nnu', 'Nn5g29865' => 'nnu', 'Oeu004163.1' => 'oeu', 'Oeu006901.1' => 'oeu', 'Oeu010096.1' => 'oeu', 'Oeu024340.1' => 'oeu', 'Oeu048369.1' => 'oeu', 'Os01g0973000' => 'osa', 'Os03g0273800' => 'osa', 'Os03g0701200' => 'osa', 'Os03g0834050' => 'osa', 'Os07g0634400' => 'osa', 'Peaxi162Scf00092g01414' => 'pax', 'Peaxi162Scf00165g00818' => 'pax', 'Peaxi162Scf00309g00516' => 'pax', 'Peaxi162Scf00774g00218' => 'pax', 'PGR004G1824' => 'pgr', 'PGR004G2606' => 'pgr', 'PGR031G2716' => 'pgr', 'PGR102G2460' => 'pgr', 'PGR142G2599' => 'pgr', 'PGSC0003DMG400000843' => 'stu', 'PGSC0003DMG400008829' => 'stu', 'PGSC0003DMG400030418' => 'stu', 'PGSC0003DMG400031834' => 'stu', 'PGSC0003DMG401028300' => 'stu', 'PGSC0003DMG402028300' => 'stu', 'Phvul.001G219300' => 'pvu', 'Phvul.007G056000' => 'pvu', 'Phvul.007G208000' => 'pvu', 'Phvul.008G119500' => 'pvu', 'Phvul.010G011200' => 'pvu', 'Phvul.010G014800' => 'pvu', 'Phvul.011G062900' => 'pvu', 'Phvul.L007043' => 'pvu', 'Potri.001G242300' => 'ptr', 'Potri.002G185300' => 'ptr', 'Potri.006G086900' => 'ptr', 'Potri.008G151700' => 'ptr', 'Potri.009G033500' => 'ptr', 'Potri.010G089300' => 'ptr', 'Potri.014G110800' => 'ptr', 'Pp3c27_8130' => 'ppa', 'Pp3c6_27410' => 'ppa', 'PRCOL_00001659' => 'pco', 'PRCOL_00001927' => 'pco', 'PRCOL_00003649' => 'pco', 'Prupe.1G011600' => 'ppe', 'Prupe.3G000800' => 'ppe', 'Prupe.3G001100' => 'ppe', 'Prupe.6G072700' => 'ppe', 'Prupe.6G072800' => 'ppe', 'Prupe.6G257300' => 'ppe', 'Prupe.8G033000' => 'ppe', 'Psat0s2633g0080' => 'psa', 'Psat0s3396g0080' => 'psa', 'Psat0s3396g0200' => 'psa', 'Psat3g139080' => 'psa', 'Psat5g285080' => 'psa', 'Psat6g157760' => 'psa', 'Psat6g208440' => 'psa', 'Psat7g215320' => 'psa', 'Psat7g215400' => 'psa', 'Psat7g235600' => 'psa', 'Psat7g235760' => 'psa', 'PSO063G4603' => 'pso', 'PSO210G0182' => 'pso', 'PSO210G0196' => 'pso', 'PSO339G0394' => 'pso', 'PSO339G4127' => 'pso', 'PSO513G0064' => 'pso', 'PSO761G0079' => 'pso', 'QL01p031003' => 'qlo', 'QL01p031078' => 'qlo', 'QL06p003004' => 'qlo', 'QL07p048731' => 'qlo', 'QL09p037427' => 'qlo', 'RcHm_v2.0_Chr3g0466361' => 'rch', 'RcHm_v2.0_Chr3g0485571' => 'rch', 'RcHm_v2.0_Chr4g0416551' => 'rch', 'RcHm_v2.0_Chr5g0065831' => 'rch', 'Rhsim01G0230500' => 'rsi', 'Rhsim05G0194000' => 'rsi', 'Rhsim08G0250400' => 'rsi', 'Sabra02G0131000' => 'sbr', 'Sabra06G0066300' => 'sbr', 'Sabra08G0115500' => 'sbr', 'Sabra09G0023900' => 'sbr', 'Sabra10G0054000' => 'sbr', 'Sabra14G0081500' => 'sbr', 'Sabra16G0147100' => 'sbr', 'SalBow2G2957' => 'sbo', 'SalBow4G3320' => 'sbo', 'SalBow8G1894' => 'sbo', 'Sc07g0007950' => 'sci', 'Sc12g0001360' => 'sci', 'Sc13g0004330' => 'sci', 'Sc20g0005010' => 'sci', 'Sed0000361' => 'sed', 'Sed0001706' => 'sed', 'Sed0002422' => 'sed', 'Sed0004029' => 'sed', 'Sed0004602' => 'sed', 'Sed0004943' => 'sed', 'Sed0008646' => 'sed', 'Sed0023313' => 'sed', 'Sed0024843' => 'sed', 'SEGI_00081' => 'sgi', 'SEGI_00947' => 'sgi', 'SEGI_04046' => 'sgi', 'SEGI_06880' => 'sgi', 'SEGI_09736' => 'sgi', 'SEGI_12741' => 'sgi', 'SEGI_14530' => 'sgi', 'SEGI_20705' => 'sgi', 'SEGI_26088' => 'sgi', 'SEGI_28323' => 'sgi', 'SEGI_33343' => 'sgi', 'SGA_v2.0_scaffold126G33775' => 'sas', 'SGA_v2.0_scaffold2G01337' => 'sas', 'SGA_v2.0_scaffold38G15006' => 'sas', 'SGA_v2.0_scaffold39G15264' => 'sas', 'SGA_v2.0_scaffold453G51880' => 'sas', 'SHI12696' => 'shi', 'SMO367G1096' => 'smo', 'Solyc01g068630.3' => 'sly', 'Solyc05g011880.3' => 'sly', 'Solyc06g076300.3' => 'sly', 'Solyc09g010940.4' => 'sly', 'Solyc09g075890.3' => 'sly', 'Sopen01g030560' => 'spe', 'Sopen05g006630' => 'spe', 'Sopen06g032720' => 'spe', 'Sopen09g005660' => 'spe', 'Sopen09g030690' => 'spe', 'Sp4g14540' => 'spa', 'Sp4g20030' => 'spa', 'Sp5g01320' => 'spa', 'Sp6g21170' => 'spa', 'Sp6g21180' => 'spa', 'Sp6g21190' => 'spa', 'Sp6g40220' => 'spa', 'TAR362G0122' => 'tar', 'TAR362G1338' => 'tar', 'TAR369G0590' => 'tar', 'TAR371G0824' => 'tar', 'TAR622G1429' => 'tar', 'TAR623G0734' => 'tar', 'TAR625G0441' => 'tar', 'TAR629G0976' => 'tar', 'TAR633G1195' => 'tar', 'TAR636G2660' => 'tar', 'THA.LOC104799440' => 'tha', 'THA.LOC104800966' => 'tha', 'THA.LOC104806559' => 'tha', 'THA.LOC104810765' => 'tha', 'THA.LOC104816266' => 'tha', 'THA.LOC104817419' => 'tha', 'THA.LOC104827021' => 'tha', 'Thecc.01G327400' => 'tca', 'Thecc.04G229200' => 'tca', 'Thecc.05G037400' => 'tca', 'Thecc.09G318600' => 'tca', 'Thecc.09G318700' => 'tca', 'Thhalv10006238m.g' => 'esa', 'Thhalv10014321m.g' => 'esa', 'Thhalv10014335m.g' => 'esa', 'Thhalv10015826m.g' => 'esa', 'Thhalv10017107m.g' => 'esa', 'Thhalv10017180m.g' => 'esa', 'Thhalv10029339m.g' => 'esa', 'TPR.G1699' => 'tpr', 'TPR.G23609' => 'tpr', 'TPR.G3081' => 'tpr', 'TPR.G40397' => 'tpr', 'TPR.G5522' => 'tpr', 'TPR.G5618' => 'tpr', 'TPR.G5626' => 'tpr', 'TWI09G1632' => 'twi', 'TWI23G1230' => 'twi', 'TWI53G1064' => 'twi', 'TWI59G0751' => 'twi', 'TWI74G0947' => 'twi', 'TWI77G0337' => 'twi', 'TWI79G1254' => 'twi', 'unitig_0.g2341' => 'ugi', 'unitig_26.g10006' => 'ugi', 'unitig_26.g10008' => 'ugi', 'unitig_26.g9192' => 'ugi', 'vmacro14547' => 'vma', 'vmacro15333' => 'vma', 'vmacro18743' => 'vma', 'vmacro20166' => 'vma', 'VMungo0331G0523' => 'vmu', 'VMungo0331G1202' => 'vmu', 'VMungo0720G1228' => 'vmu', 'VMungo0720G1514' => 'vmu', 'VMungo1080G0169' => 'vmu', 'VMungo1127G1475' => 'vmu', 'VMungo1383G1208' => 'vmu', 'VMungo1383G1698' => 'vmu', 'Zm00001eb012270' => 'zma', 'Zm00001eb054100' => 'zma', 'Zm00001eb063350' => 'zma', 'Zm00001eb328560' => 'zma', 'Zm00001eb342820' => 'zma', 'Zm00001eb362210' => 'zma', 'Zm00001eb397730' => 'zma', 'Zm00001eb399750' => 'zma' ) $gf_id = 'HOM05D000959' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000959' ) $data_identifier = 'HOM05D000959' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 5, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 5, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 10, 'mbi' => (int) 3, 'mco' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 2, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 3, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 11, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399750' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000959', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '622', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p07100' => 'bna', 'A03p11720' => 'bna', 'A05p08300' => 'bna', 'A05p13380' => 'bna', 'A09p54130' => 'bna', 'A10p16690' => 'bna', 'A10p16700' => 'bna', 'A10p33390' => 'bna', 'Aa31LG10G16020' => 'aar', 'Aa31LG1G11810' => 'aar', 'Aa31LG1G11830' => 'aar', 'Aa31LG1G22510' => 'aar', 'Aa31LG5G4890' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5793' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2310' => 'aag', 'Actinidia08499' => 'ach', 'Actinidia11262' => 'ach', 'Actinidia23926' => 'ach', 'Actinidia34420' => 'ach', 'Actinidia36970' => 'ach', 'Ah.02g111220' => 'amhyb', 'Ah.15g097750' => 'amhyb', 'AL4G27500' => 'aly', 'AL6G11470' => 'aly', 'AL8G35950' => 'aly', 'AL8G35960' => 'aly', 'AL8G35970' => 'aly', 'Aqoxy1G00912' => 'aox', 'Aqoxy2G02253' => 'aox', 'Aqoxy2G02411' => 'aox', 'Aqoxy5G00485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BZ66YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K8ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM4FUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6BF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HFV7XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25JBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0YNNV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MAKK6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P70IT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP2Z6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V61LZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YWP64R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3S9AI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7PGHH' => 'arhy', 'AT2G32150' => 'ath', 'AT3G62040' => 'ath', 'AT5G02230' => 'ath', 'AT5G59480' => 'ath', 'AT5G59490' => 'ath', 'ATR0332G060' => 'atr', 'ATR0559G190' => 'atr', 'ATR0693G294' => 'atr', 'Atru.chr3.3975' => 'acertr', 'Atru.chr3.3976' => 'acertr', 'Atru.chr3.3977' => 'acertr', 'Atru.chr4.2498' => 'acertr', 'Atru.chr5.838' => 'acertr', 'Atru.chr8.1990' => 'acertr', 'Atru.chr8.1991' => 'acertr', 'Atru.chr8.1992' => 'acertr', 'AUR62001759' => 'cqu', 'AUR62009545' => 'cqu', 'AUR62010474' => 'cqu', 'AUR62025820' => 'cqu', 'AUR62030422' => 'cqu', 'AUR62033605' => 'cqu', 'AUR62038615' => 'cqu', 'AUR62041347' => 'cqu', 'BcaB01g04574' => 'bca', 'BcaB02g09263' => 'bca', 'BcaB02g10453' => 'bca', 'BcaB05g22513' => 'bca', 'BcaB08g36253' => 'bca', 'BcaB08g36254' => 'bca', 'BcaC01g06519' => 'bca', 'BcaC02g11889' => 'bca', 'BcaC03g14010' => 'bca', 'BcaC03g18439' => 'bca', 'BcaC04g19765' => 'bca', 'BcaC09g48432' => 'bca', 'BcaNung07302' => 'bca', 'BolC2t06040H' => 'bol', 'BolC2t07346H' => 'bol', 'BolC3t13817H' => 'bol', 'BolC4t22625H' => 'bol', 'BolC4t23297H' => 'bol', 'BolC8t51278H' => 'bol', 'BolC9t58050H' => 'bol', 'BolC9t58051H' => 'bol', 'BolC9t60163H' => 'bol', 'BraA02t04712Z' => 'bra', 'BraA02t05791Z' => 'bra', 'BraA03t10483Z' => 'bra', 'BraA05t19795Z' => 'bra', 'BraA05t20276Z' => 'bra', 'BraA09t40827Z' => 'bra', 'BraA10t43750Z' => 'bra', 'BraA10t43751Z' => 'bra', 'BraA10t45370Z' => 'bra', 'C02p00400' => 'bna', 'C02p12460' => 'bna', 'C03p13680' => 'bna', 'C04p10270' => 'bna', 'C04p17500' => 'bna', 'C08p37010' => 'bna', 'C09p51880' => 'bna', 'C09p51890' => 'bna', 'C09p74300' => 'bna', 'CAN.G179.26' => 'can', 'CAN.G3384.1' => 'can', 'CAN.G394.68' => 'can', 'CAN.G907.13' => 'can', 'CANSAT11G0012' => 'cansat', 'CANSAT25G1586' => 'cansat', 'CANSAT35G0735' => 'cansat', 'CANSAT54G0556' => 'cansat', 'CANSAT64G0356' => 'cansat', 'CANSAT78G2042' => 'cansat', 'CARHR125920' => 'chi', 'CARHR131910' => 'chi', 'CARHR172390' => 'chi', 'CARHR211140' => 'chi', 'CARHR285850' => 'chi', 'CARHR285860' => 'chi', 'Carub.0004s1347' => 'cru', 'Carub.0004s1960' => 'cru', 'Carub.0005s2880' => 'cru', 'Carub.0006s0107' => 'cru', 'Carub.0008s2015' => 'cru', 'Carub.0008s2016' => 'cru', 'Carub.0008s2017' => 'cru', 'Ca_01315_v3' => 'car', 'Ca_05063_v3' => 'car', 'Ca_10231_v3' => 'car', 'Ca_10913_v3' => 'car', 'Ca_19156_v3' => 'car', 'Ca_23644_v3' => 'car', 'Ca_26735_v3' => 'car', 'Cc01_g13130' => 'ccan', 'Cc02_g21690' => 'ccan', 'Cc03_g03600' => 'ccan', 'Cc06_g02510' => 'ccan', 'CDE02G1265' => 'cde', 'CDE05G0415' => 'cde', 'CDE08G1082' => 'cde', 'Cfa005780' => 'cfa', 'Cfa011522' => 'cfa', 'Cfa011523' => 'cfa', 'Cfa015627' => 'cfa', 'Cfa017359' => 'cfa', 'Ciclev10005687m.g' => 'ccl', 'Ciclev10012173m.g' => 'ccl', 'Ciclev10021621m.g' => 'ccl', 'Ciclev10028968m.g' => 'ccl', 'Ciclev10029907m.g' => 'ccl', 'CiPaw.01G164800' => 'cil', 'CiPaw.07G083700' => 'cil', 'CiPaw.07G127000' => 'cil', 'CiPaw.07G136900' => 'cil', 'CiPaw.08G081700' => 'cil', 'CiPaw.09G194600' => 'cil', 'CiPaw.10G146500' => 'cil', 'CiPaw.13G091500' => 'cil', 'CiPaw.13G091600' => 'cil', 'ClCG00G003390' => 'cla', 'ClCG01G007220' => 'cla', 'ClCG03G001370' => 'cla', 'ClCG04G008100' => 'cla', 'ClCG06G006110' => 'cla', 'ClCG06G006130' => 'cla', 'ClCG10G021210' => 'cla', 'COL.COLO4_07648' => 'col', 'COL.COLO4_07650' => 'col', 'COL.COLO4_07651' => 'col', 'COL.COLO4_14780' => 'col', 'COL.COLO4_18546' => 'col', 'COL.COLO4_18547' => 'col', 'COL.COLO4_23103' => 'col', 'COL.COLO4_30419' => 'col', 'COL.COLO4_34232' => 'col', 'Cpa.g.sc169.20' => 'cpa', 'Cpa.g.sc57.45' => 'cpa', 'Cpa.g.sc58.124' => 'cpa', 'Cpa.g.sc58.125' => 'cpa', 'Cpa.g.sc81.118' => 'cpa', 'Cpa.g.sc81.119' => 'cpa', 'Cre12.g524700' => 'cre', 'CsaV3_1G034430' => 'csa', 'CsaV3_1G034440' => 'csa', 'CsaV3_1G034450' => 'csa', 'CsaV3_3G034830' => 'csa', 'CsaV3_4G025090' => 'csa', 'CsaV3_5G018660' => 'csa', 'CsaV3_6G038160' => 'csa', 'CSS0003447' => 'camsi', 'CSS0017840' => 'camsi', 'CSS0019260' => 'camsi', 'CSS0040375' => 'camsi', 'CSS0042533' => 'camsi', 'DCAR_005960' => 'dca', 'DCAR_012104' => 'dca', 'DCAR_012105' => 'dca', 'DCAR_012293' => 'dca', 'DCAR_015632' => 'dca', 'DCAR_024602' => 'dca', 'DCAR_028752' => 'dca', 'Dinv06261' => 'din', 'Dinv13982' => 'din', 'Dinv17029' => 'din', 'Dinv18463' => 'din', 'Dinv33181' => 'din', 'Dinv35585' => 'din', 'Dinv37161' => 'din', 'Dinv42977' => 'din', 'Dinv43122' => 'din', 'Dinv44517' => 'din', 'Duzib093G0256' => 'dzi', 'Duzib106G1254' => 'dzi', 'Duzib128G1789' => 'dzi', 'Duzib133G0633' => 'dzi', 'Duzib138G0510' => 'dzi', 'Duzib150G1084' => 'dzi', 'Duzib168G0488' => 'dzi', 'Duzib168G1523' => 'dzi', 'Duzib170G0133' => 'dzi', 'ECA234G1433' => 'eca', 'ECA236G1432' => 'eca', 'ECA236G2256' => 'eca', 'ECA236G2365' => 'eca', 'ECA236G4830' => 'eca', 'ECA248G1505' => 'eca', 'EL10Ac3g06431' => 'bvu', 'EL10Ac5g12577' => 'bvu', 'EL10Ac6g13533' => 'bvu', 'EL10Ac7g16045' => 'bvu', 'Eucgr.A01281' => 'egr', 'Eucgr.B02326' => 'egr', 'Eucgr.H03532' => 'egr', 'Eucgr.K00553' => 'egr', 'Eucgr.K03116' => 'egr', 'FAN02G3963' => 'fan', 'FAN05G0438' => 'fan', 'FAN09G2434' => 'fan', 'FAN12G3984' => 'fan', 'FAN14G0798' => 'fan', 'FAN17G0652' => 'fan', 'FAN19G1988' => 'fan', 'FAN22G0632' => 'fan', 'FAN23G0387' => 'fan', 'FAN26G1323' => 'fan', 'FAN28G0666' => 'fan', 'FvH4_1g26080' => 'fve', 'FvH4_3g36780' => 'fve', 'FvH4_4g15270' => 'fve', 'FvH4_6g13490' => 'fve', 'Glyma.01G098700' => 'gma', 'Glyma.03G065900' => 'gma', 'Glyma.03G073754' => 'gma', 'Glyma.03G073758' => 'gma', 'Glyma.03G083200' => 'gma', 'Glyma.03G225500' => 'gma', 'Glyma.05G037766' => 'gma', 'Glyma.07G133500' => 'gma', 'Glyma.10G139400' => 'gma', 'Glyma.10G248900' => 'gma', 'Glyma.11G137800' => 'gma', 'Glyma.12G061300' => 'gma', 'Glyma.13G337900' => 'gma', 'Glyma.15G036600' => 'gma', 'Glyma.18G182800' => 'gma', 'Glyma.19G222500' => 'gma', 'Glyma.20G144800' => 'gma', 'Gohir.A01G222000' => 'ghi', 'Gohir.A03G044000' => 'ghi', 'Gohir.A03G044100' => 'ghi', 'Gohir.A04G083100' => 'ghi', 'Gohir.A07G127200' => 'ghi', 'Gohir.A07G132400' => 'ghi', 'Gohir.A08G000700' => 'ghi', 'Gohir.A11G327300' => 'ghi', 'Gohir.D01G211500' => 'ghi', 'Gohir.D03G123400' => 'ghi', 'Gohir.D03G123500' => 'ghi', 'Gohir.D04G121800' => 'ghi', 'Gohir.D07G131500' => 'ghi', 'Gohir.D07G136600' => 'ghi', 'Gohir.D08G011600' => 'ghi', 'Gohir.D11G346200' => 'ghi', 'Gorai.001G142800' => 'gra', 'Gorai.001G148700' => 'gra', 'Gorai.002G257300' => 'gra', 'Gorai.003G130000' => 'gra', 'Gorai.003G130100' => 'gra', 'Gorai.004G005300' => 'gra', 'Gorai.007G376500' => 'gra', 'Gorai.012G104700' => 'gra', 'GSVIVG01017946001' => 'vvi', 'GSVIVG01024928001' => 'vvi', 'GSVIVG01028227001' => 'vvi', 'GSVIVG01034151001' => 'vvi', 'HanXRQChr05g0135031' => 'han', 'HanXRQChr05g0135041' => 'han', 'HanXRQChr05g0140021' => 'han', 'HanXRQChr06g0178981' => 'han', 'HanXRQChr07g0188251' => 'han', 'HanXRQChr08g0235311' => 'han', 'HanXRQChr09g0271011' => 'han', 'HanXRQChr10g0293321' => 'han', 'HanXRQChr13g0388171' => 'han', 'Haze_00916' => 'cav', 'Haze_05063' => 'cav', 'Haze_20814' => 'cav', 'Haze_24128' => 'cav', 'Hma1.2p1_0745F.1_g212010' => 'hma', 'Hma1.2p1_0757F.1_g213260' => 'hma', 'Hma1.2p1_0936F.1_g238840' => 'hma', 'Hma1.2p1_1735F.1_g299890' => 'hma', 'Hma1.2p1_1861F.1_g305685' => 'hma', 'HPP92_003397' => 'vpl', 'HPP92_012597' => 'vpl', 'HPP92_015520' => 'vpl', 'HPP92_015539' => 'vpl', 'HPP92_020373' => 'vpl', 'Hund04938' => 'sun', 'Hund10677' => 'sun', 'Hund11033' => 'sun', 'Hund12155' => 'sun', 'Lalb_Chr01g0022551' => 'lal', 'Lalb_Chr03g0042341' => 'lal', 'Lalb_Chr07g0192931' => 'lal', 'Lalb_Chr12g0209551' => 'lal', 'Lalb_Chr19g0125251' => 'lal', 'Lalb_Chr19g0137891' => 'lal', 'Lalb_Chr21g0304641' => 'lal', 'Lalb_Chr21g0309881' => 'lal', 'Lj1A5T12' => 'lonja', 'Lj1C148G10' => 'lonja', 'Lj2A93T83' => 'lonja', 'Lj3A738G68' => 'lonja', 'Lj3C966T1' => 'lonja', 'Lj3g0018958' => 'lja', 'Lj3g0021831' => 'lja', 'Lj3g0025443' => 'lja', 'Lj4g0026809' => 'lja', 'Lj5g0012558' => 'lja', 'Lj5g0021586' => 'lja', 'Lsat_1_v5_gn_5_156840' => 'lsa', 'Lsat_1_v5_gn_8_73460' => 'lsa', 'Lsat_1_v5_gn_8_73481' => 'lsa', 'Lsat_1_v5_gn_9_31601' => 'lsa', 'Lsat_1_v5_gn_9_77320' => 'lsa', 'Manes.01G171300' => 'mes', 'Manes.01G171400' => 'mes', 'Manes.01G236100' => 'mes', 'Manes.02G130500' => 'mes', 'Manes.02G130600' => 'mes', 'Manes.03G180200' => 'mes', 'Manes.05G007000' => 'mes', 'Manes.08G084400' => 'mes', 'Manes.09G092600' => 'mes', 'Manes.15G027900' => 'mes', 'MBI04_g40948_MAGBIO' => 'mbi', 'MBI14_g12123_MAGBIO' => 'mbi', 'MBI18_g28915_MAGBIO' => 'mbi', 'MCO09G053' => 'mco', 'MCO11G782' => 'mco', 'MCO15G215' => 'mco', 'MD03G1088500' => 'mdo', 'MD03G1088600' => 'mdo', 'MD04G1130800' => 'mdo', 'MD09G1291700' => 'mdo', 'MD11G1097500' => 'mdo', 'MD11G1097600' => 'mdo', 'MD12G1143900' => 'mdo', 'MD13G1191400' => 'mdo', 'MD16G1191500' => 'mdo', 'Medtr1g085570' => 'mtr', 'Medtr1g104610' => 'mtr', 'Medtr2g097520' => 'mtr', 'Medtr4g021800' => 'mtr', 'Medtr4g021825' => 'mtr', 'Medtr4g064270' => 'mtr', 'Medtr4g064380' => 'mtr', 'Medtr7g062150' => 'mtr', 'MELO3C003138.2' => 'cme', 'MELO3C005187.2' => 'cme', 'MELO3C009252.2' => 'cme', 'MELO3C014481.2' => 'cme', 'MELO3C020616.2' => 'cme', 'MELO3C020617.2' => 'cme', 'MELO3C020618.2' => 'cme', 'Migut.G00328' => 'egut', 'Migut.J00320' => 'egut', 'Migut.L01000' => 'egut', 'Migut.L01953' => 'egut', 'MSTRG.10253' => 'ama', 'MSTRG.19077' => 'ama', 'MSTRG.26780' => 'ama', 'MSTRG.4023' => 'ama', 'MSTRG.5655' => 'ama', 'MSTRG.9992' => 'ama', 'Nitab4.5_0000043g0310' => 'nta', 'Nitab4.5_0000463g0080' => 'nta', 'Nitab4.5_0000705g0170' => 'nta', 'Nitab4.5_0001326g0060' => 'nta', 'Nitab4.5_0001628g0030' => 'nta', 'Nitab4.5_0002103g0110' => 'nta', 'Nitab4.5_0002946g0030' => 'nta', 'Nitab4.5_0004639g0030' => 'nta', 'Nn2g11149' => 'nnu', 'Nn2g13389' => 'nnu', 'Nn4g25326' => 'nnu', 'Nn4g26290' => 'nnu', 'Nn5g29865' => 'nnu', 'Oeu004163.1' => 'oeu', 'Oeu006901.1' => 'oeu', 'Oeu010096.1' => 'oeu', 'Oeu024340.1' => 'oeu', 'Oeu048369.1' => 'oeu', 'Os01g0973000' => 'osa', 'Os03g0273800' => 'osa', 'Os03g0701200' => 'osa', 'Os03g0834050' => 'osa', 'Os07g0634400' => 'osa', 'Peaxi162Scf00092g01414' => 'pax', 'Peaxi162Scf00165g00818' => 'pax', 'Peaxi162Scf00309g00516' => 'pax', 'Peaxi162Scf00774g00218' => 'pax', 'PGR004G1824' => 'pgr', 'PGR004G2606' => 'pgr', 'PGR031G2716' => 'pgr', 'PGR102G2460' => 'pgr', 'PGR142G2599' => 'pgr', 'PGSC0003DMG400000843' => 'stu', 'PGSC0003DMG400008829' => 'stu', 'PGSC0003DMG400030418' => 'stu', 'PGSC0003DMG400031834' => 'stu', 'PGSC0003DMG401028300' => 'stu', 'PGSC0003DMG402028300' => 'stu', 'Phvul.001G219300' => 'pvu', 'Phvul.007G056000' => 'pvu', 'Phvul.007G208000' => 'pvu', 'Phvul.008G119500' => 'pvu', 'Phvul.010G011200' => 'pvu', 'Phvul.010G014800' => 'pvu', 'Phvul.011G062900' => 'pvu', 'Phvul.L007043' => 'pvu', 'Potri.001G242300' => 'ptr', 'Potri.002G185300' => 'ptr', 'Potri.006G086900' => 'ptr', 'Potri.008G151700' => 'ptr', 'Potri.009G033500' => 'ptr', 'Potri.010G089300' => 'ptr', 'Potri.014G110800' => 'ptr', 'Pp3c27_8130' => 'ppa', 'Pp3c6_27410' => 'ppa', 'PRCOL_00001659' => 'pco', 'PRCOL_00001927' => 'pco', 'PRCOL_00003649' => 'pco', 'Prupe.1G011600' => 'ppe', 'Prupe.3G000800' => 'ppe', 'Prupe.3G001100' => 'ppe', 'Prupe.6G072700' => 'ppe', 'Prupe.6G072800' => 'ppe', 'Prupe.6G257300' => 'ppe', 'Prupe.8G033000' => 'ppe', 'Psat0s2633g0080' => 'psa', 'Psat0s3396g0080' => 'psa', 'Psat0s3396g0200' => 'psa', 'Psat3g139080' => 'psa', 'Psat5g285080' => 'psa', 'Psat6g157760' => 'psa', 'Psat6g208440' => 'psa', 'Psat7g215320' => 'psa', 'Psat7g215400' => 'psa', 'Psat7g235600' => 'psa', 'Psat7g235760' => 'psa', 'PSO063G4603' => 'pso', 'PSO210G0182' => 'pso', 'PSO210G0196' => 'pso', 'PSO339G0394' => 'pso', 'PSO339G4127' => 'pso', 'PSO513G0064' => 'pso', 'PSO761G0079' => 'pso', 'QL01p031003' => 'qlo', 'QL01p031078' => 'qlo', 'QL06p003004' => 'qlo', 'QL07p048731' => 'qlo', 'QL09p037427' => 'qlo', 'RcHm_v2.0_Chr3g0466361' => 'rch', 'RcHm_v2.0_Chr3g0485571' => 'rch', 'RcHm_v2.0_Chr4g0416551' => 'rch', 'RcHm_v2.0_Chr5g0065831' => 'rch', 'Rhsim01G0230500' => 'rsi', 'Rhsim05G0194000' => 'rsi', 'Rhsim08G0250400' => 'rsi', 'Sabra02G0131000' => 'sbr', 'Sabra06G0066300' => 'sbr', 'Sabra08G0115500' => 'sbr', 'Sabra09G0023900' => 'sbr', 'Sabra10G0054000' => 'sbr', 'Sabra14G0081500' => 'sbr', 'Sabra16G0147100' => 'sbr', 'SalBow2G2957' => 'sbo', 'SalBow4G3320' => 'sbo', 'SalBow8G1894' => 'sbo', 'Sc07g0007950' => 'sci', 'Sc12g0001360' => 'sci', 'Sc13g0004330' => 'sci', 'Sc20g0005010' => 'sci', 'Sed0000361' => 'sed', 'Sed0001706' => 'sed', 'Sed0002422' => 'sed', 'Sed0004029' => 'sed', 'Sed0004602' => 'sed', 'Sed0004943' => 'sed', 'Sed0008646' => 'sed', 'Sed0023313' => 'sed', 'Sed0024843' => 'sed', 'SEGI_00081' => 'sgi', 'SEGI_00947' => 'sgi', 'SEGI_04046' => 'sgi', 'SEGI_06880' => 'sgi', 'SEGI_09736' => 'sgi', 'SEGI_12741' => 'sgi', 'SEGI_14530' => 'sgi', 'SEGI_20705' => 'sgi', 'SEGI_26088' => 'sgi', 'SEGI_28323' => 'sgi', 'SEGI_33343' => 'sgi', 'SGA_v2.0_scaffold126G33775' => 'sas', 'SGA_v2.0_scaffold2G01337' => 'sas', 'SGA_v2.0_scaffold38G15006' => 'sas', 'SGA_v2.0_scaffold39G15264' => 'sas', 'SGA_v2.0_scaffold453G51880' => 'sas', 'SHI12696' => 'shi', 'SMO367G1096' => 'smo', 'Solyc01g068630.3' => 'sly', 'Solyc05g011880.3' => 'sly', 'Solyc06g076300.3' => 'sly', 'Solyc09g010940.4' => 'sly', 'Solyc09g075890.3' => 'sly', 'Sopen01g030560' => 'spe', 'Sopen05g006630' => 'spe', 'Sopen06g032720' => 'spe', 'Sopen09g005660' => 'spe', 'Sopen09g030690' => 'spe', 'Sp4g14540' => 'spa', 'Sp4g20030' => 'spa', 'Sp5g01320' => 'spa', 'Sp6g21170' => 'spa', 'Sp6g21180' => 'spa', 'Sp6g21190' => 'spa', 'Sp6g40220' => 'spa', 'TAR362G0122' => 'tar', 'TAR362G1338' => 'tar', 'TAR369G0590' => 'tar', 'TAR371G0824' => 'tar', 'TAR622G1429' => 'tar', 'TAR623G0734' => 'tar', 'TAR625G0441' => 'tar', 'TAR629G0976' => 'tar', 'TAR633G1195' => 'tar', 'TAR636G2660' => 'tar', 'THA.LOC104799440' => 'tha', 'THA.LOC104800966' => 'tha', 'THA.LOC104806559' => 'tha', 'THA.LOC104810765' => 'tha', 'THA.LOC104816266' => 'tha', 'THA.LOC104817419' => 'tha', 'THA.LOC104827021' => 'tha', 'Thecc.01G327400' => 'tca', 'Thecc.04G229200' => 'tca', 'Thecc.05G037400' => 'tca', 'Thecc.09G318600' => 'tca', 'Thecc.09G318700' => 'tca', 'Thhalv10006238m.g' => 'esa', 'Thhalv10014321m.g' => 'esa', 'Thhalv10014335m.g' => 'esa', 'Thhalv10015826m.g' => 'esa', 'Thhalv10017107m.g' => 'esa', 'Thhalv10017180m.g' => 'esa', 'Thhalv10029339m.g' => 'esa', 'TPR.G1699' => 'tpr', 'TPR.G23609' => 'tpr', 'TPR.G3081' => 'tpr', 'TPR.G40397' => 'tpr', 'TPR.G5522' => 'tpr', 'TPR.G5618' => 'tpr', 'TPR.G5626' => 'tpr', 'TWI09G1632' => 'twi', 'TWI23G1230' => 'twi', 'TWI53G1064' => 'twi', 'TWI59G0751' => 'twi', 'TWI74G0947' => 'twi', 'TWI77G0337' => 'twi', 'TWI79G1254' => 'twi', 'unitig_0.g2341' => 'ugi', 'unitig_26.g10006' => 'ugi', 'unitig_26.g10008' => 'ugi', 'unitig_26.g9192' => 'ugi', 'vmacro14547' => 'vma', 'vmacro15333' => 'vma', 'vmacro18743' => 'vma', 'vmacro20166' => 'vma', 'VMungo0331G0523' => 'vmu', 'VMungo0331G1202' => 'vmu', 'VMungo0720G1228' => 'vmu', 'VMungo0720G1514' => 'vmu', 'VMungo1080G0169' => 'vmu', 'VMungo1127G1475' => 'vmu', 'VMungo1383G1208' => 'vmu', 'VMungo1383G1698' => 'vmu', 'Zm00001eb012270' => 'zma', 'Zm00001eb054100' => 'zma', 'Zm00001eb063350' => 'zma', 'Zm00001eb328560' => 'zma', 'Zm00001eb342820' => 'zma', 'Zm00001eb362210' => 'zma', 'Zm00001eb397730' => 'zma', 'Zm00001eb399750' => 'zma' ), 'gf_id' => 'HOM05D000959', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000959' ), 'data_identifier' => 'HOM05D000959', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000959', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '622', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p07100' => 'bna', 'A03p11720' => 'bna', 'A05p08300' => 'bna', 'A05p13380' => 'bna', 'A09p54130' => 'bna', 'A10p16690' => 'bna', 'A10p16700' => 'bna', 'A10p33390' => 'bna', 'Aa31LG10G16020' => 'aar', 'Aa31LG1G11810' => 'aar', 'Aa31LG1G11830' => 'aar', 'Aa31LG1G22510' => 'aar', 'Aa31LG5G4890' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5793' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2310' => 'aag', 'Actinidia08499' => 'ach', 'Actinidia11262' => 'ach', 'Actinidia23926' => 'ach', 'Actinidia34420' => 'ach', 'Actinidia36970' => 'ach', 'Ah.02g111220' => 'amhyb', 'Ah.15g097750' => 'amhyb', 'AL4G27500' => 'aly', 'AL6G11470' => 'aly', 'AL8G35950' => 'aly', 'AL8G35960' => 'aly', 'AL8G35970' => 'aly', 'Aqoxy1G00912' => 'aox', 'Aqoxy2G02253' => 'aox', 'Aqoxy2G02411' => 'aox', 'Aqoxy5G00485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BZ66YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K8ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM4FUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6BF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HFV7XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25JBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0YNNV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MAKK6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P70IT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP2Z6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V61LZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YWP64R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3S9AI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7PGHH' => 'arhy', 'AT2G32150' => 'ath', 'AT3G62040' => 'ath', 'AT5G02230' => 'ath', 'AT5G59480' => 'ath', 'AT5G59490' => 'ath', 'ATR0332G060' => 'atr', 'ATR0559G190' => 'atr', 'ATR0693G294' => 'atr', 'Atru.chr3.3975' => 'acertr', 'Atru.chr3.3976' => 'acertr', 'Atru.chr3.3977' => 'acertr', 'Atru.chr4.2498' => 'acertr', 'Atru.chr5.838' => 'acertr', 'Atru.chr8.1990' => 'acertr', 'Atru.chr8.1991' => 'acertr', 'Atru.chr8.1992' => 'acertr', 'AUR62001759' => 'cqu', 'AUR62009545' => 'cqu', 'AUR62010474' => 'cqu', 'AUR62025820' => 'cqu', 'AUR62030422' => 'cqu', 'AUR62033605' => 'cqu', 'AUR62038615' => 'cqu', 'AUR62041347' => 'cqu', 'BcaB01g04574' => 'bca', 'BcaB02g09263' => 'bca', 'BcaB02g10453' => 'bca', 'BcaB05g22513' => 'bca', 'BcaB08g36253' => 'bca', 'BcaB08g36254' => 'bca', 'BcaC01g06519' => 'bca', 'BcaC02g11889' => 'bca', 'BcaC03g14010' => 'bca', 'BcaC03g18439' => 'bca', 'BcaC04g19765' => 'bca', 'BcaC09g48432' => 'bca', 'BcaNung07302' => 'bca', 'BolC2t06040H' => 'bol', 'BolC2t07346H' => 'bol', 'BolC3t13817H' => 'bol', 'BolC4t22625H' => 'bol', 'BolC4t23297H' => 'bol', 'BolC8t51278H' => 'bol', 'BolC9t58050H' => 'bol', 'BolC9t58051H' => 'bol', 'BolC9t60163H' => 'bol', 'BraA02t04712Z' => 'bra', 'BraA02t05791Z' => 'bra', 'BraA03t10483Z' => 'bra', 'BraA05t19795Z' => 'bra', 'BraA05t20276Z' => 'bra', 'BraA09t40827Z' => 'bra', 'BraA10t43750Z' => 'bra', 'BraA10t43751Z' => 'bra', 'BraA10t45370Z' => 'bra', 'C02p00400' => 'bna', 'C02p12460' => 'bna', 'C03p13680' => 'bna', 'C04p10270' => 'bna', 'C04p17500' => 'bna', 'C08p37010' => 'bna', 'C09p51880' => 'bna', 'C09p51890' => 'bna', 'C09p74300' => 'bna', 'CAN.G179.26' => 'can', 'CAN.G3384.1' => 'can', 'CAN.G394.68' => 'can', 'CAN.G907.13' => 'can', 'CANSAT11G0012' => 'cansat', 'CANSAT25G1586' => 'cansat', 'CANSAT35G0735' => 'cansat', 'CANSAT54G0556' => 'cansat', 'CANSAT64G0356' => 'cansat', 'CANSAT78G2042' => 'cansat', 'CARHR125920' => 'chi', 'CARHR131910' => 'chi', 'CARHR172390' => 'chi', 'CARHR211140' => 'chi', 'CARHR285850' => 'chi', 'CARHR285860' => 'chi', 'Carub.0004s1347' => 'cru', 'Carub.0004s1960' => 'cru', 'Carub.0005s2880' => 'cru', 'Carub.0006s0107' => 'cru', 'Carub.0008s2015' => 'cru', 'Carub.0008s2016' => 'cru', 'Carub.0008s2017' => 'cru', 'Ca_01315_v3' => 'car', 'Ca_05063_v3' => 'car', 'Ca_10231_v3' => 'car', 'Ca_10913_v3' => 'car', 'Ca_19156_v3' => 'car', 'Ca_23644_v3' => 'car', 'Ca_26735_v3' => 'car', 'Cc01_g13130' => 'ccan', 'Cc02_g21690' => 'ccan', 'Cc03_g03600' => 'ccan', 'Cc06_g02510' => 'ccan', 'CDE02G1265' => 'cde', 'CDE05G0415' => 'cde', 'CDE08G1082' => 'cde', 'Cfa005780' => 'cfa', 'Cfa011522' => 'cfa', 'Cfa011523' => 'cfa', 'Cfa015627' => 'cfa', 'Cfa017359' => 'cfa', 'Ciclev10005687m.g' => 'ccl', 'Ciclev10012173m.g' => 'ccl', 'Ciclev10021621m.g' => 'ccl', 'Ciclev10028968m.g' => 'ccl', 'Ciclev10029907m.g' => 'ccl', 'CiPaw.01G164800' => 'cil', 'CiPaw.07G083700' => 'cil', 'CiPaw.07G127000' => 'cil', 'CiPaw.07G136900' => 'cil', 'CiPaw.08G081700' => 'cil', 'CiPaw.09G194600' => 'cil', 'CiPaw.10G146500' => 'cil', 'CiPaw.13G091500' => 'cil', 'CiPaw.13G091600' => 'cil', 'ClCG00G003390' => 'cla', 'ClCG01G007220' => 'cla', 'ClCG03G001370' => 'cla', 'ClCG04G008100' => 'cla', 'ClCG06G006110' => 'cla', 'ClCG06G006130' => 'cla', 'ClCG10G021210' => 'cla', 'COL.COLO4_07648' => 'col', 'COL.COLO4_07650' => 'col', 'COL.COLO4_07651' => 'col', 'COL.COLO4_14780' => 'col', 'COL.COLO4_18546' => 'col', 'COL.COLO4_18547' => 'col', 'COL.COLO4_23103' => 'col', 'COL.COLO4_30419' => 'col', 'COL.COLO4_34232' => 'col', 'Cpa.g.sc169.20' => 'cpa', 'Cpa.g.sc57.45' => 'cpa', 'Cpa.g.sc58.124' => 'cpa', 'Cpa.g.sc58.125' => 'cpa', 'Cpa.g.sc81.118' => 'cpa', 'Cpa.g.sc81.119' => 'cpa', 'Cre12.g524700' => 'cre', 'CsaV3_1G034430' => 'csa', 'CsaV3_1G034440' => 'csa', 'CsaV3_1G034450' => 'csa', 'CsaV3_3G034830' => 'csa', 'CsaV3_4G025090' => 'csa', 'CsaV3_5G018660' => 'csa', 'CsaV3_6G038160' => 'csa', 'CSS0003447' => 'camsi', 'CSS0017840' => 'camsi', 'CSS0019260' => 'camsi', 'CSS0040375' => 'camsi', 'CSS0042533' => 'camsi', 'DCAR_005960' => 'dca', 'DCAR_012104' => 'dca', 'DCAR_012105' => 'dca', 'DCAR_012293' => 'dca', 'DCAR_015632' => 'dca', 'DCAR_024602' => 'dca', 'DCAR_028752' => 'dca', 'Dinv06261' => 'din', 'Dinv13982' => 'din', 'Dinv17029' => 'din', 'Dinv18463' => 'din', 'Dinv33181' => 'din', 'Dinv35585' => 'din', 'Dinv37161' => 'din', 'Dinv42977' => 'din', 'Dinv43122' => 'din', 'Dinv44517' => 'din', 'Duzib093G0256' => 'dzi', 'Duzib106G1254' => 'dzi', 'Duzib128G1789' => 'dzi', 'Duzib133G0633' => 'dzi', 'Duzib138G0510' => 'dzi', 'Duzib150G1084' => 'dzi', 'Duzib168G0488' => 'dzi', 'Duzib168G1523' => 'dzi', 'Duzib170G0133' => 'dzi', 'ECA234G1433' => 'eca', 'ECA236G1432' => 'eca', 'ECA236G2256' => 'eca', 'ECA236G2365' => 'eca', 'ECA236G4830' => 'eca', 'ECA248G1505' => 'eca', 'EL10Ac3g06431' => 'bvu', 'EL10Ac5g12577' => 'bvu', 'EL10Ac6g13533' => 'bvu', 'EL10Ac7g16045' => 'bvu', 'Eucgr.A01281' => 'egr', 'Eucgr.B02326' => 'egr', 'Eucgr.H03532' => 'egr', 'Eucgr.K00553' => 'egr', 'Eucgr.K03116' => 'egr', 'FAN02G3963' => 'fan', 'FAN05G0438' => 'fan', 'FAN09G2434' => 'fan', 'FAN12G3984' => 'fan', 'FAN14G0798' => 'fan', 'FAN17G0652' => 'fan', 'FAN19G1988' => 'fan', 'FAN22G0632' => 'fan', 'FAN23G0387' => 'fan', 'FAN26G1323' => 'fan', 'FAN28G0666' => 'fan', 'FvH4_1g26080' => 'fve', 'FvH4_3g36780' => 'fve', 'FvH4_4g15270' => 'fve', 'FvH4_6g13490' => 'fve', 'Glyma.01G098700' => 'gma', 'Glyma.03G065900' => 'gma', 'Glyma.03G073754' => 'gma', 'Glyma.03G073758' => 'gma', 'Glyma.03G083200' => 'gma', 'Glyma.03G225500' => 'gma', 'Glyma.05G037766' => 'gma', 'Glyma.07G133500' => 'gma', 'Glyma.10G139400' => 'gma', 'Glyma.10G248900' => 'gma', 'Glyma.11G137800' => 'gma', 'Glyma.12G061300' => 'gma', 'Glyma.13G337900' => 'gma', 'Glyma.15G036600' => 'gma', 'Glyma.18G182800' => 'gma', 'Glyma.19G222500' => 'gma', 'Glyma.20G144800' => 'gma', 'Gohir.A01G222000' => 'ghi', 'Gohir.A03G044000' => 'ghi', 'Gohir.A03G044100' => 'ghi', 'Gohir.A04G083100' => 'ghi', 'Gohir.A07G127200' => 'ghi', 'Gohir.A07G132400' => 'ghi', 'Gohir.A08G000700' => 'ghi', 'Gohir.A11G327300' => 'ghi', 'Gohir.D01G211500' => 'ghi', 'Gohir.D03G123400' => 'ghi', 'Gohir.D03G123500' => 'ghi', 'Gohir.D04G121800' => 'ghi', 'Gohir.D07G131500' => 'ghi', 'Gohir.D07G136600' => 'ghi', 'Gohir.D08G011600' => 'ghi', 'Gohir.D11G346200' => 'ghi', 'Gorai.001G142800' => 'gra', 'Gorai.001G148700' => 'gra', 'Gorai.002G257300' => 'gra', 'Gorai.003G130000' => 'gra', 'Gorai.003G130100' => 'gra', 'Gorai.004G005300' => 'gra', 'Gorai.007G376500' => 'gra', 'Gorai.012G104700' => 'gra', 'GSVIVG01017946001' => 'vvi', 'GSVIVG01024928001' => 'vvi', 'GSVIVG01028227001' => 'vvi', 'GSVIVG01034151001' => 'vvi', 'HanXRQChr05g0135031' => 'han', 'HanXRQChr05g0135041' => 'han', 'HanXRQChr05g0140021' => 'han', 'HanXRQChr06g0178981' => 'han', 'HanXRQChr07g0188251' => 'han', 'HanXRQChr08g0235311' => 'han', 'HanXRQChr09g0271011' => 'han', 'HanXRQChr10g0293321' => 'han', 'HanXRQChr13g0388171' => 'han', 'Haze_00916' => 'cav', 'Haze_05063' => 'cav', 'Haze_20814' => 'cav', 'Haze_24128' => 'cav', 'Hma1.2p1_0745F.1_g212010' => 'hma', 'Hma1.2p1_0757F.1_g213260' => 'hma', 'Hma1.2p1_0936F.1_g238840' => 'hma', 'Hma1.2p1_1735F.1_g299890' => 'hma', 'Hma1.2p1_1861F.1_g305685' => 'hma', 'HPP92_003397' => 'vpl', 'HPP92_012597' => 'vpl', 'HPP92_015520' => 'vpl', 'HPP92_015539' => 'vpl', 'HPP92_020373' => 'vpl', 'Hund04938' => 'sun', 'Hund10677' => 'sun', 'Hund11033' => 'sun', 'Hund12155' => 'sun', 'Lalb_Chr01g0022551' => 'lal', 'Lalb_Chr03g0042341' => 'lal', 'Lalb_Chr07g0192931' => 'lal', 'Lalb_Chr12g0209551' => 'lal', 'Lalb_Chr19g0125251' => 'lal', 'Lalb_Chr19g0137891' => 'lal', 'Lalb_Chr21g0304641' => 'lal', 'Lalb_Chr21g0309881' => 'lal', 'Lj1A5T12' => 'lonja', 'Lj1C148G10' => 'lonja', 'Lj2A93T83' => 'lonja', 'Lj3A738G68' => 'lonja', 'Lj3C966T1' => 'lonja', 'Lj3g0018958' => 'lja', 'Lj3g0021831' => 'lja', 'Lj3g0025443' => 'lja', 'Lj4g0026809' => 'lja', 'Lj5g0012558' => 'lja', 'Lj5g0021586' => 'lja', 'Lsat_1_v5_gn_5_156840' => 'lsa', 'Lsat_1_v5_gn_8_73460' => 'lsa', 'Lsat_1_v5_gn_8_73481' => 'lsa', 'Lsat_1_v5_gn_9_31601' => 'lsa', 'Lsat_1_v5_gn_9_77320' => 'lsa', 'Manes.01G171300' => 'mes', 'Manes.01G171400' => 'mes', 'Manes.01G236100' => 'mes', 'Manes.02G130500' => 'mes', 'Manes.02G130600' => 'mes', 'Manes.03G180200' => 'mes', 'Manes.05G007000' => 'mes', 'Manes.08G084400' => 'mes', 'Manes.09G092600' => 'mes', 'Manes.15G027900' => 'mes', 'MBI04_g40948_MAGBIO' => 'mbi', 'MBI14_g12123_MAGBIO' => 'mbi', 'MBI18_g28915_MAGBIO' => 'mbi', 'MCO09G053' => 'mco', 'MCO11G782' => 'mco', 'MCO15G215' => 'mco', 'MD03G1088500' => 'mdo', 'MD03G1088600' => 'mdo', 'MD04G1130800' => 'mdo', 'MD09G1291700' => 'mdo', 'MD11G1097500' => 'mdo', 'MD11G1097600' => 'mdo', 'MD12G1143900' => 'mdo', 'MD13G1191400' => 'mdo', 'MD16G1191500' => 'mdo', 'Medtr1g085570' => 'mtr', 'Medtr1g104610' => 'mtr', 'Medtr2g097520' => 'mtr', 'Medtr4g021800' => 'mtr', 'Medtr4g021825' => 'mtr', 'Medtr4g064270' => 'mtr', 'Medtr4g064380' => 'mtr', 'Medtr7g062150' => 'mtr', 'MELO3C003138.2' => 'cme', 'MELO3C005187.2' => 'cme', 'MELO3C009252.2' => 'cme', 'MELO3C014481.2' => 'cme', 'MELO3C020616.2' => 'cme', 'MELO3C020617.2' => 'cme', 'MELO3C020618.2' => 'cme', 'Migut.G00328' => 'egut', 'Migut.J00320' => 'egut', 'Migut.L01000' => 'egut', 'Migut.L01953' => 'egut', 'MSTRG.10253' => 'ama', 'MSTRG.19077' => 'ama', 'MSTRG.26780' => 'ama', 'MSTRG.4023' => 'ama', 'MSTRG.5655' => 'ama', 'MSTRG.9992' => 'ama', 'Nitab4.5_0000043g0310' => 'nta', 'Nitab4.5_0000463g0080' => 'nta', 'Nitab4.5_0000705g0170' => 'nta', 'Nitab4.5_0001326g0060' => 'nta', 'Nitab4.5_0001628g0030' => 'nta', 'Nitab4.5_0002103g0110' => 'nta', 'Nitab4.5_0002946g0030' => 'nta', 'Nitab4.5_0004639g0030' => 'nta', 'Nn2g11149' => 'nnu', 'Nn2g13389' => 'nnu', 'Nn4g25326' => 'nnu', 'Nn4g26290' => 'nnu', 'Nn5g29865' => 'nnu', 'Oeu004163.1' => 'oeu', 'Oeu006901.1' => 'oeu', 'Oeu010096.1' => 'oeu', 'Oeu024340.1' => 'oeu', 'Oeu048369.1' => 'oeu', 'Os01g0973000' => 'osa', 'Os03g0273800' => 'osa', 'Os03g0701200' => 'osa', 'Os03g0834050' => 'osa', 'Os07g0634400' => 'osa', 'Peaxi162Scf00092g01414' => 'pax', 'Peaxi162Scf00165g00818' => 'pax', 'Peaxi162Scf00309g00516' => 'pax', 'Peaxi162Scf00774g00218' => 'pax', 'PGR004G1824' => 'pgr', 'PGR004G2606' => 'pgr', 'PGR031G2716' => 'pgr', 'PGR102G2460' => 'pgr', 'PGR142G2599' => 'pgr', 'PGSC0003DMG400000843' => 'stu', 'PGSC0003DMG400008829' => 'stu', 'PGSC0003DMG400030418' => 'stu', 'PGSC0003DMG400031834' => 'stu', 'PGSC0003DMG401028300' => 'stu', 'PGSC0003DMG402028300' => 'stu', 'Phvul.001G219300' => 'pvu', 'Phvul.007G056000' => 'pvu', 'Phvul.007G208000' => 'pvu', 'Phvul.008G119500' => 'pvu', 'Phvul.010G011200' => 'pvu', 'Phvul.010G014800' => 'pvu', 'Phvul.011G062900' => 'pvu', 'Phvul.L007043' => 'pvu', 'Potri.001G242300' => 'ptr', 'Potri.002G185300' => 'ptr', 'Potri.006G086900' => 'ptr', 'Potri.008G151700' => 'ptr', 'Potri.009G033500' => 'ptr', 'Potri.010G089300' => 'ptr', 'Potri.014G110800' => 'ptr', 'Pp3c27_8130' => 'ppa', 'Pp3c6_27410' => 'ppa', 'PRCOL_00001659' => 'pco', 'PRCOL_00001927' => 'pco', 'PRCOL_00003649' => 'pco', 'Prupe.1G011600' => 'ppe', 'Prupe.3G000800' => 'ppe', 'Prupe.3G001100' => 'ppe', 'Prupe.6G072700' => 'ppe', 'Prupe.6G072800' => 'ppe', 'Prupe.6G257300' => 'ppe', 'Prupe.8G033000' => 'ppe', 'Psat0s2633g0080' => 'psa', 'Psat0s3396g0080' => 'psa', 'Psat0s3396g0200' => 'psa', 'Psat3g139080' => 'psa', 'Psat5g285080' => 'psa', 'Psat6g157760' => 'psa', 'Psat6g208440' => 'psa', 'Psat7g215320' => 'psa', 'Psat7g215400' => 'psa', 'Psat7g235600' => 'psa', 'Psat7g235760' => 'psa', 'PSO063G4603' => 'pso', 'PSO210G0182' => 'pso', 'PSO210G0196' => 'pso', 'PSO339G0394' => 'pso', 'PSO339G4127' => 'pso', 'PSO513G0064' => 'pso', 'PSO761G0079' => 'pso', 'QL01p031003' => 'qlo', 'QL01p031078' => 'qlo', 'QL06p003004' => 'qlo', 'QL07p048731' => 'qlo', 'QL09p037427' => 'qlo', 'RcHm_v2.0_Chr3g0466361' => 'rch', 'RcHm_v2.0_Chr3g0485571' => 'rch', 'RcHm_v2.0_Chr4g0416551' => 'rch', 'RcHm_v2.0_Chr5g0065831' => 'rch', 'Rhsim01G0230500' => 'rsi', 'Rhsim05G0194000' => 'rsi', 'Rhsim08G0250400' => 'rsi', 'Sabra02G0131000' => 'sbr', 'Sabra06G0066300' => 'sbr', 'Sabra08G0115500' => 'sbr', 'Sabra09G0023900' => 'sbr', 'Sabra10G0054000' => 'sbr', 'Sabra14G0081500' => 'sbr', 'Sabra16G0147100' => 'sbr', 'SalBow2G2957' => 'sbo', 'SalBow4G3320' => 'sbo', 'SalBow8G1894' => 'sbo', 'Sc07g0007950' => 'sci', 'Sc12g0001360' => 'sci', 'Sc13g0004330' => 'sci', 'Sc20g0005010' => 'sci', 'Sed0000361' => 'sed', 'Sed0001706' => 'sed', 'Sed0002422' => 'sed', 'Sed0004029' => 'sed', 'Sed0004602' => 'sed', 'Sed0004943' => 'sed', 'Sed0008646' => 'sed', 'Sed0023313' => 'sed', 'Sed0024843' => 'sed', 'SEGI_00081' => 'sgi', 'SEGI_00947' => 'sgi', 'SEGI_04046' => 'sgi', 'SEGI_06880' => 'sgi', 'SEGI_09736' => 'sgi', 'SEGI_12741' => 'sgi', 'SEGI_14530' => 'sgi', 'SEGI_20705' => 'sgi', 'SEGI_26088' => 'sgi', 'SEGI_28323' => 'sgi', 'SEGI_33343' => 'sgi', 'SGA_v2.0_scaffold126G33775' => 'sas', 'SGA_v2.0_scaffold2G01337' => 'sas', 'SGA_v2.0_scaffold38G15006' => 'sas', 'SGA_v2.0_scaffold39G15264' => 'sas', 'SGA_v2.0_scaffold453G51880' => 'sas', 'SHI12696' => 'shi', 'SMO367G1096' => 'smo', 'Solyc01g068630.3' => 'sly', 'Solyc05g011880.3' => 'sly', 'Solyc06g076300.3' => 'sly', 'Solyc09g010940.4' => 'sly', 'Solyc09g075890.3' => 'sly', 'Sopen01g030560' => 'spe', 'Sopen05g006630' => 'spe', 'Sopen06g032720' => 'spe', 'Sopen09g005660' => 'spe', 'Sopen09g030690' => 'spe', 'Sp4g14540' => 'spa', 'Sp4g20030' => 'spa', 'Sp5g01320' => 'spa', 'Sp6g21170' => 'spa', 'Sp6g21180' => 'spa', 'Sp6g21190' => 'spa', 'Sp6g40220' => 'spa', 'TAR362G0122' => 'tar', 'TAR362G1338' => 'tar', 'TAR369G0590' => 'tar', 'TAR371G0824' => 'tar', 'TAR622G1429' => 'tar', 'TAR623G0734' => 'tar', 'TAR625G0441' => 'tar', 'TAR629G0976' => 'tar', 'TAR633G1195' => 'tar', 'TAR636G2660' => 'tar', 'THA.LOC104799440' => 'tha', 'THA.LOC104800966' => 'tha', 'THA.LOC104806559' => 'tha', 'THA.LOC104810765' => 'tha', 'THA.LOC104816266' => 'tha', 'THA.LOC104817419' => 'tha', 'THA.LOC104827021' => 'tha', 'Thecc.01G327400' => 'tca', 'Thecc.04G229200' => 'tca', 'Thecc.05G037400' => 'tca', 'Thecc.09G318600' => 'tca', 'Thecc.09G318700' => 'tca', 'Thhalv10006238m.g' => 'esa', 'Thhalv10014321m.g' => 'esa', 'Thhalv10014335m.g' => 'esa', 'Thhalv10015826m.g' => 'esa', 'Thhalv10017107m.g' => 'esa', 'Thhalv10017180m.g' => 'esa', 'Thhalv10029339m.g' => 'esa', 'TPR.G1699' => 'tpr', 'TPR.G23609' => 'tpr', 'TPR.G3081' => 'tpr', 'TPR.G40397' => 'tpr', 'TPR.G5522' => 'tpr', 'TPR.G5618' => 'tpr', 'TPR.G5626' => 'tpr', 'TWI09G1632' => 'twi', 'TWI23G1230' => 'twi', 'TWI53G1064' => 'twi', 'TWI59G0751' => 'twi', 'TWI74G0947' => 'twi', 'TWI77G0337' => 'twi', 'TWI79G1254' => 'twi', 'unitig_0.g2341' => 'ugi', 'unitig_26.g10006' => 'ugi', 'unitig_26.g10008' => 'ugi', 'unitig_26.g9192' => 'ugi', 'vmacro14547' => 'vma', 'vmacro15333' => 'vma', 'vmacro18743' => 'vma', 'vmacro20166' => 'vma', 'VMungo0331G0523' => 'vmu', 'VMungo0331G1202' => 'vmu', 'VMungo0720G1228' => 'vmu', 'VMungo0720G1514' => 'vmu', 'VMungo1080G0169' => 'vmu', 'VMungo1127G1475' => 'vmu', 'VMungo1383G1208' => 'vmu', 'VMungo1383G1698' => 'vmu', 'Zm00001eb012270' => 'zma', 'Zm00001eb054100' => 'zma', 'Zm00001eb063350' => 'zma', 'Zm00001eb328560' => 'zma', 'Zm00001eb342820' => 'zma', 'Zm00001eb362210' => 'zma', 'Zm00001eb397730' => 'zma', 'Zm00001eb399750' => 'zma' ) $gf_id = 'HOM05D000959' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000959' ) $data_identifier = 'HOM05D000959' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 5, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 5, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 10, 'mbi' => (int) 3, 'mco' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 2, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 3, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 11, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399750' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000959', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '622', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p07100' => 'bna', 'A03p11720' => 'bna', 'A05p08300' => 'bna', 'A05p13380' => 'bna', 'A09p54130' => 'bna', 'A10p16690' => 'bna', 'A10p16700' => 'bna', 'A10p33390' => 'bna', 'Aa31LG10G16020' => 'aar', 'Aa31LG1G11810' => 'aar', 'Aa31LG1G11830' => 'aar', 'Aa31LG1G22510' => 'aar', 'Aa31LG5G4890' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5793' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2310' => 'aag', 'Actinidia08499' => 'ach', 'Actinidia11262' => 'ach', 'Actinidia23926' => 'ach', 'Actinidia34420' => 'ach', 'Actinidia36970' => 'ach', 'Ah.02g111220' => 'amhyb', 'Ah.15g097750' => 'amhyb', 'AL4G27500' => 'aly', 'AL6G11470' => 'aly', 'AL8G35950' => 'aly', 'AL8G35960' => 'aly', 'AL8G35970' => 'aly', 'Aqoxy1G00912' => 'aox', 'Aqoxy2G02253' => 'aox', 'Aqoxy2G02411' => 'aox', 'Aqoxy5G00485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BZ66YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K8ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM4FUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6BF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HFV7XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25JBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0YNNV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MAKK6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P70IT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP2Z6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V61LZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YWP64R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3S9AI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7PGHH' => 'arhy', 'AT2G32150' => 'ath', 'AT3G62040' => 'ath', 'AT5G02230' => 'ath', 'AT5G59480' => 'ath', 'AT5G59490' => 'ath', 'ATR0332G060' => 'atr', 'ATR0559G190' => 'atr', 'ATR0693G294' => 'atr', 'Atru.chr3.3975' => 'acertr', 'Atru.chr3.3976' => 'acertr', 'Atru.chr3.3977' => 'acertr', 'Atru.chr4.2498' => 'acertr', 'Atru.chr5.838' => 'acertr', 'Atru.chr8.1990' => 'acertr', 'Atru.chr8.1991' => 'acertr', 'Atru.chr8.1992' => 'acertr', 'AUR62001759' => 'cqu', 'AUR62009545' => 'cqu', 'AUR62010474' => 'cqu', 'AUR62025820' => 'cqu', 'AUR62030422' => 'cqu', 'AUR62033605' => 'cqu', 'AUR62038615' => 'cqu', 'AUR62041347' => 'cqu', 'BcaB01g04574' => 'bca', 'BcaB02g09263' => 'bca', 'BcaB02g10453' => 'bca', 'BcaB05g22513' => 'bca', 'BcaB08g36253' => 'bca', 'BcaB08g36254' => 'bca', 'BcaC01g06519' => 'bca', 'BcaC02g11889' => 'bca', 'BcaC03g14010' => 'bca', 'BcaC03g18439' => 'bca', 'BcaC04g19765' => 'bca', 'BcaC09g48432' => 'bca', 'BcaNung07302' => 'bca', 'BolC2t06040H' => 'bol', 'BolC2t07346H' => 'bol', 'BolC3t13817H' => 'bol', 'BolC4t22625H' => 'bol', 'BolC4t23297H' => 'bol', 'BolC8t51278H' => 'bol', 'BolC9t58050H' => 'bol', 'BolC9t58051H' => 'bol', 'BolC9t60163H' => 'bol', 'BraA02t04712Z' => 'bra', 'BraA02t05791Z' => 'bra', 'BraA03t10483Z' => 'bra', 'BraA05t19795Z' => 'bra', 'BraA05t20276Z' => 'bra', 'BraA09t40827Z' => 'bra', 'BraA10t43750Z' => 'bra', 'BraA10t43751Z' => 'bra', 'BraA10t45370Z' => 'bra', 'C02p00400' => 'bna', 'C02p12460' => 'bna', 'C03p13680' => 'bna', 'C04p10270' => 'bna', 'C04p17500' => 'bna', 'C08p37010' => 'bna', 'C09p51880' => 'bna', 'C09p51890' => 'bna', 'C09p74300' => 'bna', 'CAN.G179.26' => 'can', 'CAN.G3384.1' => 'can', 'CAN.G394.68' => 'can', 'CAN.G907.13' => 'can', 'CANSAT11G0012' => 'cansat', 'CANSAT25G1586' => 'cansat', 'CANSAT35G0735' => 'cansat', 'CANSAT54G0556' => 'cansat', 'CANSAT64G0356' => 'cansat', 'CANSAT78G2042' => 'cansat', 'CARHR125920' => 'chi', 'CARHR131910' => 'chi', 'CARHR172390' => 'chi', 'CARHR211140' => 'chi', 'CARHR285850' => 'chi', 'CARHR285860' => 'chi', 'Carub.0004s1347' => 'cru', 'Carub.0004s1960' => 'cru', 'Carub.0005s2880' => 'cru', 'Carub.0006s0107' => 'cru', 'Carub.0008s2015' => 'cru', 'Carub.0008s2016' => 'cru', 'Carub.0008s2017' => 'cru', 'Ca_01315_v3' => 'car', 'Ca_05063_v3' => 'car', 'Ca_10231_v3' => 'car', 'Ca_10913_v3' => 'car', 'Ca_19156_v3' => 'car', 'Ca_23644_v3' => 'car', 'Ca_26735_v3' => 'car', 'Cc01_g13130' => 'ccan', 'Cc02_g21690' => 'ccan', 'Cc03_g03600' => 'ccan', 'Cc06_g02510' => 'ccan', 'CDE02G1265' => 'cde', 'CDE05G0415' => 'cde', 'CDE08G1082' => 'cde', 'Cfa005780' => 'cfa', 'Cfa011522' => 'cfa', 'Cfa011523' => 'cfa', 'Cfa015627' => 'cfa', 'Cfa017359' => 'cfa', 'Ciclev10005687m.g' => 'ccl', 'Ciclev10012173m.g' => 'ccl', 'Ciclev10021621m.g' => 'ccl', 'Ciclev10028968m.g' => 'ccl', 'Ciclev10029907m.g' => 'ccl', 'CiPaw.01G164800' => 'cil', 'CiPaw.07G083700' => 'cil', 'CiPaw.07G127000' => 'cil', 'CiPaw.07G136900' => 'cil', 'CiPaw.08G081700' => 'cil', 'CiPaw.09G194600' => 'cil', 'CiPaw.10G146500' => 'cil', 'CiPaw.13G091500' => 'cil', 'CiPaw.13G091600' => 'cil', 'ClCG00G003390' => 'cla', 'ClCG01G007220' => 'cla', 'ClCG03G001370' => 'cla', 'ClCG04G008100' => 'cla', 'ClCG06G006110' => 'cla', 'ClCG06G006130' => 'cla', 'ClCG10G021210' => 'cla', 'COL.COLO4_07648' => 'col', 'COL.COLO4_07650' => 'col', 'COL.COLO4_07651' => 'col', 'COL.COLO4_14780' => 'col', 'COL.COLO4_18546' => 'col', 'COL.COLO4_18547' => 'col', 'COL.COLO4_23103' => 'col', 'COL.COLO4_30419' => 'col', 'COL.COLO4_34232' => 'col', 'Cpa.g.sc169.20' => 'cpa', 'Cpa.g.sc57.45' => 'cpa', 'Cpa.g.sc58.124' => 'cpa', 'Cpa.g.sc58.125' => 'cpa', 'Cpa.g.sc81.118' => 'cpa', 'Cpa.g.sc81.119' => 'cpa', 'Cre12.g524700' => 'cre', 'CsaV3_1G034430' => 'csa', 'CsaV3_1G034440' => 'csa', 'CsaV3_1G034450' => 'csa', 'CsaV3_3G034830' => 'csa', 'CsaV3_4G025090' => 'csa', 'CsaV3_5G018660' => 'csa', 'CsaV3_6G038160' => 'csa', 'CSS0003447' => 'camsi', 'CSS0017840' => 'camsi', 'CSS0019260' => 'camsi', 'CSS0040375' => 'camsi', 'CSS0042533' => 'camsi', 'DCAR_005960' => 'dca', 'DCAR_012104' => 'dca', 'DCAR_012105' => 'dca', 'DCAR_012293' => 'dca', 'DCAR_015632' => 'dca', 'DCAR_024602' => 'dca', 'DCAR_028752' => 'dca', 'Dinv06261' => 'din', 'Dinv13982' => 'din', 'Dinv17029' => 'din', 'Dinv18463' => 'din', 'Dinv33181' => 'din', 'Dinv35585' => 'din', 'Dinv37161' => 'din', 'Dinv42977' => 'din', 'Dinv43122' => 'din', 'Dinv44517' => 'din', 'Duzib093G0256' => 'dzi', 'Duzib106G1254' => 'dzi', 'Duzib128G1789' => 'dzi', 'Duzib133G0633' => 'dzi', 'Duzib138G0510' => 'dzi', 'Duzib150G1084' => 'dzi', 'Duzib168G0488' => 'dzi', 'Duzib168G1523' => 'dzi', 'Duzib170G0133' => 'dzi', 'ECA234G1433' => 'eca', 'ECA236G1432' => 'eca', 'ECA236G2256' => 'eca', 'ECA236G2365' => 'eca', 'ECA236G4830' => 'eca', 'ECA248G1505' => 'eca', 'EL10Ac3g06431' => 'bvu', 'EL10Ac5g12577' => 'bvu', 'EL10Ac6g13533' => 'bvu', 'EL10Ac7g16045' => 'bvu', 'Eucgr.A01281' => 'egr', 'Eucgr.B02326' => 'egr', 'Eucgr.H03532' => 'egr', 'Eucgr.K00553' => 'egr', 'Eucgr.K03116' => 'egr', 'FAN02G3963' => 'fan', 'FAN05G0438' => 'fan', 'FAN09G2434' => 'fan', 'FAN12G3984' => 'fan', 'FAN14G0798' => 'fan', 'FAN17G0652' => 'fan', 'FAN19G1988' => 'fan', 'FAN22G0632' => 'fan', 'FAN23G0387' => 'fan', 'FAN26G1323' => 'fan', 'FAN28G0666' => 'fan', 'FvH4_1g26080' => 'fve', 'FvH4_3g36780' => 'fve', 'FvH4_4g15270' => 'fve', 'FvH4_6g13490' => 'fve', 'Glyma.01G098700' => 'gma', 'Glyma.03G065900' => 'gma', 'Glyma.03G073754' => 'gma', 'Glyma.03G073758' => 'gma', 'Glyma.03G083200' => 'gma', 'Glyma.03G225500' => 'gma', 'Glyma.05G037766' => 'gma', 'Glyma.07G133500' => 'gma', 'Glyma.10G139400' => 'gma', 'Glyma.10G248900' => 'gma', 'Glyma.11G137800' => 'gma', 'Glyma.12G061300' => 'gma', 'Glyma.13G337900' => 'gma', 'Glyma.15G036600' => 'gma', 'Glyma.18G182800' => 'gma', 'Glyma.19G222500' => 'gma', 'Glyma.20G144800' => 'gma', 'Gohir.A01G222000' => 'ghi', 'Gohir.A03G044000' => 'ghi', 'Gohir.A03G044100' => 'ghi', 'Gohir.A04G083100' => 'ghi', 'Gohir.A07G127200' => 'ghi', 'Gohir.A07G132400' => 'ghi', 'Gohir.A08G000700' => 'ghi', 'Gohir.A11G327300' => 'ghi', 'Gohir.D01G211500' => 'ghi', 'Gohir.D03G123400' => 'ghi', 'Gohir.D03G123500' => 'ghi', 'Gohir.D04G121800' => 'ghi', 'Gohir.D07G131500' => 'ghi', 'Gohir.D07G136600' => 'ghi', 'Gohir.D08G011600' => 'ghi', 'Gohir.D11G346200' => 'ghi', 'Gorai.001G142800' => 'gra', 'Gorai.001G148700' => 'gra', 'Gorai.002G257300' => 'gra', 'Gorai.003G130000' => 'gra', 'Gorai.003G130100' => 'gra', 'Gorai.004G005300' => 'gra', 'Gorai.007G376500' => 'gra', 'Gorai.012G104700' => 'gra', 'GSVIVG01017946001' => 'vvi', 'GSVIVG01024928001' => 'vvi', 'GSVIVG01028227001' => 'vvi', 'GSVIVG01034151001' => 'vvi', 'HanXRQChr05g0135031' => 'han', 'HanXRQChr05g0135041' => 'han', 'HanXRQChr05g0140021' => 'han', 'HanXRQChr06g0178981' => 'han', 'HanXRQChr07g0188251' => 'han', 'HanXRQChr08g0235311' => 'han', 'HanXRQChr09g0271011' => 'han', 'HanXRQChr10g0293321' => 'han', 'HanXRQChr13g0388171' => 'han', 'Haze_00916' => 'cav', 'Haze_05063' => 'cav', 'Haze_20814' => 'cav', 'Haze_24128' => 'cav', 'Hma1.2p1_0745F.1_g212010' => 'hma', 'Hma1.2p1_0757F.1_g213260' => 'hma', 'Hma1.2p1_0936F.1_g238840' => 'hma', 'Hma1.2p1_1735F.1_g299890' => 'hma', 'Hma1.2p1_1861F.1_g305685' => 'hma', 'HPP92_003397' => 'vpl', 'HPP92_012597' => 'vpl', 'HPP92_015520' => 'vpl', 'HPP92_015539' => 'vpl', 'HPP92_020373' => 'vpl', 'Hund04938' => 'sun', 'Hund10677' => 'sun', 'Hund11033' => 'sun', 'Hund12155' => 'sun', 'Lalb_Chr01g0022551' => 'lal', 'Lalb_Chr03g0042341' => 'lal', 'Lalb_Chr07g0192931' => 'lal', 'Lalb_Chr12g0209551' => 'lal', 'Lalb_Chr19g0125251' => 'lal', 'Lalb_Chr19g0137891' => 'lal', 'Lalb_Chr21g0304641' => 'lal', 'Lalb_Chr21g0309881' => 'lal', 'Lj1A5T12' => 'lonja', 'Lj1C148G10' => 'lonja', 'Lj2A93T83' => 'lonja', 'Lj3A738G68' => 'lonja', 'Lj3C966T1' => 'lonja', 'Lj3g0018958' => 'lja', 'Lj3g0021831' => 'lja', 'Lj3g0025443' => 'lja', 'Lj4g0026809' => 'lja', 'Lj5g0012558' => 'lja', 'Lj5g0021586' => 'lja', 'Lsat_1_v5_gn_5_156840' => 'lsa', 'Lsat_1_v5_gn_8_73460' => 'lsa', 'Lsat_1_v5_gn_8_73481' => 'lsa', 'Lsat_1_v5_gn_9_31601' => 'lsa', 'Lsat_1_v5_gn_9_77320' => 'lsa', 'Manes.01G171300' => 'mes', 'Manes.01G171400' => 'mes', 'Manes.01G236100' => 'mes', 'Manes.02G130500' => 'mes', 'Manes.02G130600' => 'mes', 'Manes.03G180200' => 'mes', 'Manes.05G007000' => 'mes', 'Manes.08G084400' => 'mes', 'Manes.09G092600' => 'mes', 'Manes.15G027900' => 'mes', 'MBI04_g40948_MAGBIO' => 'mbi', 'MBI14_g12123_MAGBIO' => 'mbi', 'MBI18_g28915_MAGBIO' => 'mbi', 'MCO09G053' => 'mco', 'MCO11G782' => 'mco', 'MCO15G215' => 'mco', 'MD03G1088500' => 'mdo', 'MD03G1088600' => 'mdo', 'MD04G1130800' => 'mdo', 'MD09G1291700' => 'mdo', 'MD11G1097500' => 'mdo', 'MD11G1097600' => 'mdo', 'MD12G1143900' => 'mdo', 'MD13G1191400' => 'mdo', 'MD16G1191500' => 'mdo', 'Medtr1g085570' => 'mtr', 'Medtr1g104610' => 'mtr', 'Medtr2g097520' => 'mtr', 'Medtr4g021800' => 'mtr', 'Medtr4g021825' => 'mtr', 'Medtr4g064270' => 'mtr', 'Medtr4g064380' => 'mtr', 'Medtr7g062150' => 'mtr', 'MELO3C003138.2' => 'cme', 'MELO3C005187.2' => 'cme', 'MELO3C009252.2' => 'cme', 'MELO3C014481.2' => 'cme', 'MELO3C020616.2' => 'cme', 'MELO3C020617.2' => 'cme', 'MELO3C020618.2' => 'cme', 'Migut.G00328' => 'egut', 'Migut.J00320' => 'egut', 'Migut.L01000' => 'egut', 'Migut.L01953' => 'egut', 'MSTRG.10253' => 'ama', 'MSTRG.19077' => 'ama', 'MSTRG.26780' => 'ama', 'MSTRG.4023' => 'ama', 'MSTRG.5655' => 'ama', 'MSTRG.9992' => 'ama', 'Nitab4.5_0000043g0310' => 'nta', 'Nitab4.5_0000463g0080' => 'nta', 'Nitab4.5_0000705g0170' => 'nta', 'Nitab4.5_0001326g0060' => 'nta', 'Nitab4.5_0001628g0030' => 'nta', 'Nitab4.5_0002103g0110' => 'nta', 'Nitab4.5_0002946g0030' => 'nta', 'Nitab4.5_0004639g0030' => 'nta', 'Nn2g11149' => 'nnu', 'Nn2g13389' => 'nnu', 'Nn4g25326' => 'nnu', 'Nn4g26290' => 'nnu', 'Nn5g29865' => 'nnu', 'Oeu004163.1' => 'oeu', 'Oeu006901.1' => 'oeu', 'Oeu010096.1' => 'oeu', 'Oeu024340.1' => 'oeu', 'Oeu048369.1' => 'oeu', 'Os01g0973000' => 'osa', 'Os03g0273800' => 'osa', 'Os03g0701200' => 'osa', 'Os03g0834050' => 'osa', 'Os07g0634400' => 'osa', 'Peaxi162Scf00092g01414' => 'pax', 'Peaxi162Scf00165g00818' => 'pax', 'Peaxi162Scf00309g00516' => 'pax', 'Peaxi162Scf00774g00218' => 'pax', 'PGR004G1824' => 'pgr', 'PGR004G2606' => 'pgr', 'PGR031G2716' => 'pgr', 'PGR102G2460' => 'pgr', 'PGR142G2599' => 'pgr', 'PGSC0003DMG400000843' => 'stu', 'PGSC0003DMG400008829' => 'stu', 'PGSC0003DMG400030418' => 'stu', 'PGSC0003DMG400031834' => 'stu', 'PGSC0003DMG401028300' => 'stu', 'PGSC0003DMG402028300' => 'stu', 'Phvul.001G219300' => 'pvu', 'Phvul.007G056000' => 'pvu', 'Phvul.007G208000' => 'pvu', 'Phvul.008G119500' => 'pvu', 'Phvul.010G011200' => 'pvu', 'Phvul.010G014800' => 'pvu', 'Phvul.011G062900' => 'pvu', 'Phvul.L007043' => 'pvu', 'Potri.001G242300' => 'ptr', 'Potri.002G185300' => 'ptr', 'Potri.006G086900' => 'ptr', 'Potri.008G151700' => 'ptr', 'Potri.009G033500' => 'ptr', 'Potri.010G089300' => 'ptr', 'Potri.014G110800' => 'ptr', 'Pp3c27_8130' => 'ppa', 'Pp3c6_27410' => 'ppa', 'PRCOL_00001659' => 'pco', 'PRCOL_00001927' => 'pco', 'PRCOL_00003649' => 'pco', 'Prupe.1G011600' => 'ppe', 'Prupe.3G000800' => 'ppe', 'Prupe.3G001100' => 'ppe', 'Prupe.6G072700' => 'ppe', 'Prupe.6G072800' => 'ppe', 'Prupe.6G257300' => 'ppe', 'Prupe.8G033000' => 'ppe', 'Psat0s2633g0080' => 'psa', 'Psat0s3396g0080' => 'psa', 'Psat0s3396g0200' => 'psa', 'Psat3g139080' => 'psa', 'Psat5g285080' => 'psa', 'Psat6g157760' => 'psa', 'Psat6g208440' => 'psa', 'Psat7g215320' => 'psa', 'Psat7g215400' => 'psa', 'Psat7g235600' => 'psa', 'Psat7g235760' => 'psa', 'PSO063G4603' => 'pso', 'PSO210G0182' => 'pso', 'PSO210G0196' => 'pso', 'PSO339G0394' => 'pso', 'PSO339G4127' => 'pso', 'PSO513G0064' => 'pso', 'PSO761G0079' => 'pso', 'QL01p031003' => 'qlo', 'QL01p031078' => 'qlo', 'QL06p003004' => 'qlo', 'QL07p048731' => 'qlo', 'QL09p037427' => 'qlo', 'RcHm_v2.0_Chr3g0466361' => 'rch', 'RcHm_v2.0_Chr3g0485571' => 'rch', 'RcHm_v2.0_Chr4g0416551' => 'rch', 'RcHm_v2.0_Chr5g0065831' => 'rch', 'Rhsim01G0230500' => 'rsi', 'Rhsim05G0194000' => 'rsi', 'Rhsim08G0250400' => 'rsi', 'Sabra02G0131000' => 'sbr', 'Sabra06G0066300' => 'sbr', 'Sabra08G0115500' => 'sbr', 'Sabra09G0023900' => 'sbr', 'Sabra10G0054000' => 'sbr', 'Sabra14G0081500' => 'sbr', 'Sabra16G0147100' => 'sbr', 'SalBow2G2957' => 'sbo', 'SalBow4G3320' => 'sbo', 'SalBow8G1894' => 'sbo', 'Sc07g0007950' => 'sci', 'Sc12g0001360' => 'sci', 'Sc13g0004330' => 'sci', 'Sc20g0005010' => 'sci', 'Sed0000361' => 'sed', 'Sed0001706' => 'sed', 'Sed0002422' => 'sed', 'Sed0004029' => 'sed', 'Sed0004602' => 'sed', 'Sed0004943' => 'sed', 'Sed0008646' => 'sed', 'Sed0023313' => 'sed', 'Sed0024843' => 'sed', 'SEGI_00081' => 'sgi', 'SEGI_00947' => 'sgi', 'SEGI_04046' => 'sgi', 'SEGI_06880' => 'sgi', 'SEGI_09736' => 'sgi', 'SEGI_12741' => 'sgi', 'SEGI_14530' => 'sgi', 'SEGI_20705' => 'sgi', 'SEGI_26088' => 'sgi', 'SEGI_28323' => 'sgi', 'SEGI_33343' => 'sgi', 'SGA_v2.0_scaffold126G33775' => 'sas', 'SGA_v2.0_scaffold2G01337' => 'sas', 'SGA_v2.0_scaffold38G15006' => 'sas', 'SGA_v2.0_scaffold39G15264' => 'sas', 'SGA_v2.0_scaffold453G51880' => 'sas', 'SHI12696' => 'shi', 'SMO367G1096' => 'smo', 'Solyc01g068630.3' => 'sly', 'Solyc05g011880.3' => 'sly', 'Solyc06g076300.3' => 'sly', 'Solyc09g010940.4' => 'sly', 'Solyc09g075890.3' => 'sly', 'Sopen01g030560' => 'spe', 'Sopen05g006630' => 'spe', 'Sopen06g032720' => 'spe', 'Sopen09g005660' => 'spe', 'Sopen09g030690' => 'spe', 'Sp4g14540' => 'spa', 'Sp4g20030' => 'spa', 'Sp5g01320' => 'spa', 'Sp6g21170' => 'spa', 'Sp6g21180' => 'spa', 'Sp6g21190' => 'spa', 'Sp6g40220' => 'spa', 'TAR362G0122' => 'tar', 'TAR362G1338' => 'tar', 'TAR369G0590' => 'tar', 'TAR371G0824' => 'tar', 'TAR622G1429' => 'tar', 'TAR623G0734' => 'tar', 'TAR625G0441' => 'tar', 'TAR629G0976' => 'tar', 'TAR633G1195' => 'tar', 'TAR636G2660' => 'tar', 'THA.LOC104799440' => 'tha', 'THA.LOC104800966' => 'tha', 'THA.LOC104806559' => 'tha', 'THA.LOC104810765' => 'tha', 'THA.LOC104816266' => 'tha', 'THA.LOC104817419' => 'tha', 'THA.LOC104827021' => 'tha', 'Thecc.01G327400' => 'tca', 'Thecc.04G229200' => 'tca', 'Thecc.05G037400' => 'tca', 'Thecc.09G318600' => 'tca', 'Thecc.09G318700' => 'tca', 'Thhalv10006238m.g' => 'esa', 'Thhalv10014321m.g' => 'esa', 'Thhalv10014335m.g' => 'esa', 'Thhalv10015826m.g' => 'esa', 'Thhalv10017107m.g' => 'esa', 'Thhalv10017180m.g' => 'esa', 'Thhalv10029339m.g' => 'esa', 'TPR.G1699' => 'tpr', 'TPR.G23609' => 'tpr', 'TPR.G3081' => 'tpr', 'TPR.G40397' => 'tpr', 'TPR.G5522' => 'tpr', 'TPR.G5618' => 'tpr', 'TPR.G5626' => 'tpr', 'TWI09G1632' => 'twi', 'TWI23G1230' => 'twi', 'TWI53G1064' => 'twi', 'TWI59G0751' => 'twi', 'TWI74G0947' => 'twi', 'TWI77G0337' => 'twi', 'TWI79G1254' => 'twi', 'unitig_0.g2341' => 'ugi', 'unitig_26.g10006' => 'ugi', 'unitig_26.g10008' => 'ugi', 'unitig_26.g9192' => 'ugi', 'vmacro14547' => 'vma', 'vmacro15333' => 'vma', 'vmacro18743' => 'vma', 'vmacro20166' => 'vma', 'VMungo0331G0523' => 'vmu', 'VMungo0331G1202' => 'vmu', 'VMungo0720G1228' => 'vmu', 'VMungo0720G1514' => 'vmu', 'VMungo1080G0169' => 'vmu', 'VMungo1127G1475' => 'vmu', 'VMungo1383G1208' => 'vmu', 'VMungo1383G1698' => 'vmu', 'Zm00001eb012270' => 'zma', 'Zm00001eb054100' => 'zma', 'Zm00001eb063350' => 'zma', 'Zm00001eb328560' => 'zma', 'Zm00001eb342820' => 'zma', 'Zm00001eb362210' => 'zma', 'Zm00001eb397730' => 'zma', 'Zm00001eb399750' => 'zma' ), 'gf_id' => 'HOM05D000959', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000959' ), 'data_identifier' => 'HOM05D000959', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000959', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '622', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p07100' => 'bna', 'A03p11720' => 'bna', 'A05p08300' => 'bna', 'A05p13380' => 'bna', 'A09p54130' => 'bna', 'A10p16690' => 'bna', 'A10p16700' => 'bna', 'A10p33390' => 'bna', 'Aa31LG10G16020' => 'aar', 'Aa31LG1G11810' => 'aar', 'Aa31LG1G11830' => 'aar', 'Aa31LG1G22510' => 'aar', 'Aa31LG5G4890' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5793' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2310' => 'aag', 'Actinidia08499' => 'ach', 'Actinidia11262' => 'ach', 'Actinidia23926' => 'ach', 'Actinidia34420' => 'ach', 'Actinidia36970' => 'ach', 'Ah.02g111220' => 'amhyb', 'Ah.15g097750' => 'amhyb', 'AL4G27500' => 'aly', 'AL6G11470' => 'aly', 'AL8G35950' => 'aly', 'AL8G35960' => 'aly', 'AL8G35970' => 'aly', 'Aqoxy1G00912' => 'aox', 'Aqoxy2G02253' => 'aox', 'Aqoxy2G02411' => 'aox', 'Aqoxy5G00485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BZ66YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K8ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM4FUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6BF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HFV7XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25JBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0YNNV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MAKK6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P70IT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP2Z6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V61LZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YWP64R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3S9AI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7PGHH' => 'arhy', 'AT2G32150' => 'ath', 'AT3G62040' => 'ath', 'AT5G02230' => 'ath', 'AT5G59480' => 'ath', 'AT5G59490' => 'ath', 'ATR0332G060' => 'atr', 'ATR0559G190' => 'atr', 'ATR0693G294' => 'atr', 'Atru.chr3.3975' => 'acertr', 'Atru.chr3.3976' => 'acertr', 'Atru.chr3.3977' => 'acertr', 'Atru.chr4.2498' => 'acertr', 'Atru.chr5.838' => 'acertr', 'Atru.chr8.1990' => 'acertr', 'Atru.chr8.1991' => 'acertr', 'Atru.chr8.1992' => 'acertr', 'AUR62001759' => 'cqu', 'AUR62009545' => 'cqu', 'AUR62010474' => 'cqu', 'AUR62025820' => 'cqu', 'AUR62030422' => 'cqu', 'AUR62033605' => 'cqu', 'AUR62038615' => 'cqu', 'AUR62041347' => 'cqu', 'BcaB01g04574' => 'bca', 'BcaB02g09263' => 'bca', 'BcaB02g10453' => 'bca', 'BcaB05g22513' => 'bca', 'BcaB08g36253' => 'bca', 'BcaB08g36254' => 'bca', 'BcaC01g06519' => 'bca', 'BcaC02g11889' => 'bca', 'BcaC03g14010' => 'bca', 'BcaC03g18439' => 'bca', 'BcaC04g19765' => 'bca', 'BcaC09g48432' => 'bca', 'BcaNung07302' => 'bca', 'BolC2t06040H' => 'bol', 'BolC2t07346H' => 'bol', 'BolC3t13817H' => 'bol', 'BolC4t22625H' => 'bol', 'BolC4t23297H' => 'bol', 'BolC8t51278H' => 'bol', 'BolC9t58050H' => 'bol', 'BolC9t58051H' => 'bol', 'BolC9t60163H' => 'bol', 'BraA02t04712Z' => 'bra', 'BraA02t05791Z' => 'bra', 'BraA03t10483Z' => 'bra', 'BraA05t19795Z' => 'bra', 'BraA05t20276Z' => 'bra', 'BraA09t40827Z' => 'bra', 'BraA10t43750Z' => 'bra', 'BraA10t43751Z' => 'bra', 'BraA10t45370Z' => 'bra', 'C02p00400' => 'bna', 'C02p12460' => 'bna', 'C03p13680' => 'bna', 'C04p10270' => 'bna', 'C04p17500' => 'bna', 'C08p37010' => 'bna', 'C09p51880' => 'bna', 'C09p51890' => 'bna', 'C09p74300' => 'bna', 'CAN.G179.26' => 'can', 'CAN.G3384.1' => 'can', 'CAN.G394.68' => 'can', 'CAN.G907.13' => 'can', 'CANSAT11G0012' => 'cansat', 'CANSAT25G1586' => 'cansat', 'CANSAT35G0735' => 'cansat', 'CANSAT54G0556' => 'cansat', 'CANSAT64G0356' => 'cansat', 'CANSAT78G2042' => 'cansat', 'CARHR125920' => 'chi', 'CARHR131910' => 'chi', 'CARHR172390' => 'chi', 'CARHR211140' => 'chi', 'CARHR285850' => 'chi', 'CARHR285860' => 'chi', 'Carub.0004s1347' => 'cru', 'Carub.0004s1960' => 'cru', 'Carub.0005s2880' => 'cru', 'Carub.0006s0107' => 'cru', 'Carub.0008s2015' => 'cru', 'Carub.0008s2016' => 'cru', 'Carub.0008s2017' => 'cru', 'Ca_01315_v3' => 'car', 'Ca_05063_v3' => 'car', 'Ca_10231_v3' => 'car', 'Ca_10913_v3' => 'car', 'Ca_19156_v3' => 'car', 'Ca_23644_v3' => 'car', 'Ca_26735_v3' => 'car', 'Cc01_g13130' => 'ccan', 'Cc02_g21690' => 'ccan', 'Cc03_g03600' => 'ccan', 'Cc06_g02510' => 'ccan', 'CDE02G1265' => 'cde', 'CDE05G0415' => 'cde', 'CDE08G1082' => 'cde', 'Cfa005780' => 'cfa', 'Cfa011522' => 'cfa', 'Cfa011523' => 'cfa', 'Cfa015627' => 'cfa', 'Cfa017359' => 'cfa', 'Ciclev10005687m.g' => 'ccl', 'Ciclev10012173m.g' => 'ccl', 'Ciclev10021621m.g' => 'ccl', 'Ciclev10028968m.g' => 'ccl', 'Ciclev10029907m.g' => 'ccl', 'CiPaw.01G164800' => 'cil', 'CiPaw.07G083700' => 'cil', 'CiPaw.07G127000' => 'cil', 'CiPaw.07G136900' => 'cil', 'CiPaw.08G081700' => 'cil', 'CiPaw.09G194600' => 'cil', 'CiPaw.10G146500' => 'cil', 'CiPaw.13G091500' => 'cil', 'CiPaw.13G091600' => 'cil', 'ClCG00G003390' => 'cla', 'ClCG01G007220' => 'cla', 'ClCG03G001370' => 'cla', 'ClCG04G008100' => 'cla', 'ClCG06G006110' => 'cla', 'ClCG06G006130' => 'cla', 'ClCG10G021210' => 'cla', 'COL.COLO4_07648' => 'col', 'COL.COLO4_07650' => 'col', 'COL.COLO4_07651' => 'col', 'COL.COLO4_14780' => 'col', 'COL.COLO4_18546' => 'col', 'COL.COLO4_18547' => 'col', 'COL.COLO4_23103' => 'col', 'COL.COLO4_30419' => 'col', 'COL.COLO4_34232' => 'col', 'Cpa.g.sc169.20' => 'cpa', 'Cpa.g.sc57.45' => 'cpa', 'Cpa.g.sc58.124' => 'cpa', 'Cpa.g.sc58.125' => 'cpa', 'Cpa.g.sc81.118' => 'cpa', 'Cpa.g.sc81.119' => 'cpa', 'Cre12.g524700' => 'cre', 'CsaV3_1G034430' => 'csa', 'CsaV3_1G034440' => 'csa', 'CsaV3_1G034450' => 'csa', 'CsaV3_3G034830' => 'csa', 'CsaV3_4G025090' => 'csa', 'CsaV3_5G018660' => 'csa', 'CsaV3_6G038160' => 'csa', 'CSS0003447' => 'camsi', 'CSS0017840' => 'camsi', 'CSS0019260' => 'camsi', 'CSS0040375' => 'camsi', 'CSS0042533' => 'camsi', 'DCAR_005960' => 'dca', 'DCAR_012104' => 'dca', 'DCAR_012105' => 'dca', 'DCAR_012293' => 'dca', 'DCAR_015632' => 'dca', 'DCAR_024602' => 'dca', 'DCAR_028752' => 'dca', 'Dinv06261' => 'din', 'Dinv13982' => 'din', 'Dinv17029' => 'din', 'Dinv18463' => 'din', 'Dinv33181' => 'din', 'Dinv35585' => 'din', 'Dinv37161' => 'din', 'Dinv42977' => 'din', 'Dinv43122' => 'din', 'Dinv44517' => 'din', 'Duzib093G0256' => 'dzi', 'Duzib106G1254' => 'dzi', 'Duzib128G1789' => 'dzi', 'Duzib133G0633' => 'dzi', 'Duzib138G0510' => 'dzi', 'Duzib150G1084' => 'dzi', 'Duzib168G0488' => 'dzi', 'Duzib168G1523' => 'dzi', 'Duzib170G0133' => 'dzi', 'ECA234G1433' => 'eca', 'ECA236G1432' => 'eca', 'ECA236G2256' => 'eca', 'ECA236G2365' => 'eca', 'ECA236G4830' => 'eca', 'ECA248G1505' => 'eca', 'EL10Ac3g06431' => 'bvu', 'EL10Ac5g12577' => 'bvu', 'EL10Ac6g13533' => 'bvu', 'EL10Ac7g16045' => 'bvu', 'Eucgr.A01281' => 'egr', 'Eucgr.B02326' => 'egr', 'Eucgr.H03532' => 'egr', 'Eucgr.K00553' => 'egr', 'Eucgr.K03116' => 'egr', 'FAN02G3963' => 'fan', 'FAN05G0438' => 'fan', 'FAN09G2434' => 'fan', 'FAN12G3984' => 'fan', 'FAN14G0798' => 'fan', 'FAN17G0652' => 'fan', 'FAN19G1988' => 'fan', 'FAN22G0632' => 'fan', 'FAN23G0387' => 'fan', 'FAN26G1323' => 'fan', 'FAN28G0666' => 'fan', 'FvH4_1g26080' => 'fve', 'FvH4_3g36780' => 'fve', 'FvH4_4g15270' => 'fve', 'FvH4_6g13490' => 'fve', 'Glyma.01G098700' => 'gma', 'Glyma.03G065900' => 'gma', 'Glyma.03G073754' => 'gma', 'Glyma.03G073758' => 'gma', 'Glyma.03G083200' => 'gma', 'Glyma.03G225500' => 'gma', 'Glyma.05G037766' => 'gma', 'Glyma.07G133500' => 'gma', 'Glyma.10G139400' => 'gma', 'Glyma.10G248900' => 'gma', 'Glyma.11G137800' => 'gma', 'Glyma.12G061300' => 'gma', 'Glyma.13G337900' => 'gma', 'Glyma.15G036600' => 'gma', 'Glyma.18G182800' => 'gma', 'Glyma.19G222500' => 'gma', 'Glyma.20G144800' => 'gma', 'Gohir.A01G222000' => 'ghi', 'Gohir.A03G044000' => 'ghi', 'Gohir.A03G044100' => 'ghi', 'Gohir.A04G083100' => 'ghi', 'Gohir.A07G127200' => 'ghi', 'Gohir.A07G132400' => 'ghi', 'Gohir.A08G000700' => 'ghi', 'Gohir.A11G327300' => 'ghi', 'Gohir.D01G211500' => 'ghi', 'Gohir.D03G123400' => 'ghi', 'Gohir.D03G123500' => 'ghi', 'Gohir.D04G121800' => 'ghi', 'Gohir.D07G131500' => 'ghi', 'Gohir.D07G136600' => 'ghi', 'Gohir.D08G011600' => 'ghi', 'Gohir.D11G346200' => 'ghi', 'Gorai.001G142800' => 'gra', 'Gorai.001G148700' => 'gra', 'Gorai.002G257300' => 'gra', 'Gorai.003G130000' => 'gra', 'Gorai.003G130100' => 'gra', 'Gorai.004G005300' => 'gra', 'Gorai.007G376500' => 'gra', 'Gorai.012G104700' => 'gra', 'GSVIVG01017946001' => 'vvi', 'GSVIVG01024928001' => 'vvi', 'GSVIVG01028227001' => 'vvi', 'GSVIVG01034151001' => 'vvi', 'HanXRQChr05g0135031' => 'han', 'HanXRQChr05g0135041' => 'han', 'HanXRQChr05g0140021' => 'han', 'HanXRQChr06g0178981' => 'han', 'HanXRQChr07g0188251' => 'han', 'HanXRQChr08g0235311' => 'han', 'HanXRQChr09g0271011' => 'han', 'HanXRQChr10g0293321' => 'han', 'HanXRQChr13g0388171' => 'han', 'Haze_00916' => 'cav', 'Haze_05063' => 'cav', 'Haze_20814' => 'cav', 'Haze_24128' => 'cav', 'Hma1.2p1_0745F.1_g212010' => 'hma', 'Hma1.2p1_0757F.1_g213260' => 'hma', 'Hma1.2p1_0936F.1_g238840' => 'hma', 'Hma1.2p1_1735F.1_g299890' => 'hma', 'Hma1.2p1_1861F.1_g305685' => 'hma', 'HPP92_003397' => 'vpl', 'HPP92_012597' => 'vpl', 'HPP92_015520' => 'vpl', 'HPP92_015539' => 'vpl', 'HPP92_020373' => 'vpl', 'Hund04938' => 'sun', 'Hund10677' => 'sun', 'Hund11033' => 'sun', 'Hund12155' => 'sun', 'Lalb_Chr01g0022551' => 'lal', 'Lalb_Chr03g0042341' => 'lal', 'Lalb_Chr07g0192931' => 'lal', 'Lalb_Chr12g0209551' => 'lal', 'Lalb_Chr19g0125251' => 'lal', 'Lalb_Chr19g0137891' => 'lal', 'Lalb_Chr21g0304641' => 'lal', 'Lalb_Chr21g0309881' => 'lal', 'Lj1A5T12' => 'lonja', 'Lj1C148G10' => 'lonja', 'Lj2A93T83' => 'lonja', 'Lj3A738G68' => 'lonja', 'Lj3C966T1' => 'lonja', 'Lj3g0018958' => 'lja', 'Lj3g0021831' => 'lja', 'Lj3g0025443' => 'lja', 'Lj4g0026809' => 'lja', 'Lj5g0012558' => 'lja', 'Lj5g0021586' => 'lja', 'Lsat_1_v5_gn_5_156840' => 'lsa', 'Lsat_1_v5_gn_8_73460' => 'lsa', 'Lsat_1_v5_gn_8_73481' => 'lsa', 'Lsat_1_v5_gn_9_31601' => 'lsa', 'Lsat_1_v5_gn_9_77320' => 'lsa', 'Manes.01G171300' => 'mes', 'Manes.01G171400' => 'mes', 'Manes.01G236100' => 'mes', 'Manes.02G130500' => 'mes', 'Manes.02G130600' => 'mes', 'Manes.03G180200' => 'mes', 'Manes.05G007000' => 'mes', 'Manes.08G084400' => 'mes', 'Manes.09G092600' => 'mes', 'Manes.15G027900' => 'mes', 'MBI04_g40948_MAGBIO' => 'mbi', 'MBI14_g12123_MAGBIO' => 'mbi', 'MBI18_g28915_MAGBIO' => 'mbi', 'MCO09G053' => 'mco', 'MCO11G782' => 'mco', 'MCO15G215' => 'mco', 'MD03G1088500' => 'mdo', 'MD03G1088600' => 'mdo', 'MD04G1130800' => 'mdo', 'MD09G1291700' => 'mdo', 'MD11G1097500' => 'mdo', 'MD11G1097600' => 'mdo', 'MD12G1143900' => 'mdo', 'MD13G1191400' => 'mdo', 'MD16G1191500' => 'mdo', 'Medtr1g085570' => 'mtr', 'Medtr1g104610' => 'mtr', 'Medtr2g097520' => 'mtr', 'Medtr4g021800' => 'mtr', 'Medtr4g021825' => 'mtr', 'Medtr4g064270' => 'mtr', 'Medtr4g064380' => 'mtr', 'Medtr7g062150' => 'mtr', 'MELO3C003138.2' => 'cme', 'MELO3C005187.2' => 'cme', 'MELO3C009252.2' => 'cme', 'MELO3C014481.2' => 'cme', 'MELO3C020616.2' => 'cme', 'MELO3C020617.2' => 'cme', 'MELO3C020618.2' => 'cme', 'Migut.G00328' => 'egut', 'Migut.J00320' => 'egut', 'Migut.L01000' => 'egut', 'Migut.L01953' => 'egut', 'MSTRG.10253' => 'ama', 'MSTRG.19077' => 'ama', 'MSTRG.26780' => 'ama', 'MSTRG.4023' => 'ama', 'MSTRG.5655' => 'ama', 'MSTRG.9992' => 'ama', 'Nitab4.5_0000043g0310' => 'nta', 'Nitab4.5_0000463g0080' => 'nta', 'Nitab4.5_0000705g0170' => 'nta', 'Nitab4.5_0001326g0060' => 'nta', 'Nitab4.5_0001628g0030' => 'nta', 'Nitab4.5_0002103g0110' => 'nta', 'Nitab4.5_0002946g0030' => 'nta', 'Nitab4.5_0004639g0030' => 'nta', 'Nn2g11149' => 'nnu', 'Nn2g13389' => 'nnu', 'Nn4g25326' => 'nnu', 'Nn4g26290' => 'nnu', 'Nn5g29865' => 'nnu', 'Oeu004163.1' => 'oeu', 'Oeu006901.1' => 'oeu', 'Oeu010096.1' => 'oeu', 'Oeu024340.1' => 'oeu', 'Oeu048369.1' => 'oeu', 'Os01g0973000' => 'osa', 'Os03g0273800' => 'osa', 'Os03g0701200' => 'osa', 'Os03g0834050' => 'osa', 'Os07g0634400' => 'osa', 'Peaxi162Scf00092g01414' => 'pax', 'Peaxi162Scf00165g00818' => 'pax', 'Peaxi162Scf00309g00516' => 'pax', 'Peaxi162Scf00774g00218' => 'pax', 'PGR004G1824' => 'pgr', 'PGR004G2606' => 'pgr', 'PGR031G2716' => 'pgr', 'PGR102G2460' => 'pgr', 'PGR142G2599' => 'pgr', 'PGSC0003DMG400000843' => 'stu', 'PGSC0003DMG400008829' => 'stu', 'PGSC0003DMG400030418' => 'stu', 'PGSC0003DMG400031834' => 'stu', 'PGSC0003DMG401028300' => 'stu', 'PGSC0003DMG402028300' => 'stu', 'Phvul.001G219300' => 'pvu', 'Phvul.007G056000' => 'pvu', 'Phvul.007G208000' => 'pvu', 'Phvul.008G119500' => 'pvu', 'Phvul.010G011200' => 'pvu', 'Phvul.010G014800' => 'pvu', 'Phvul.011G062900' => 'pvu', 'Phvul.L007043' => 'pvu', 'Potri.001G242300' => 'ptr', 'Potri.002G185300' => 'ptr', 'Potri.006G086900' => 'ptr', 'Potri.008G151700' => 'ptr', 'Potri.009G033500' => 'ptr', 'Potri.010G089300' => 'ptr', 'Potri.014G110800' => 'ptr', 'Pp3c27_8130' => 'ppa', 'Pp3c6_27410' => 'ppa', 'PRCOL_00001659' => 'pco', 'PRCOL_00001927' => 'pco', 'PRCOL_00003649' => 'pco', 'Prupe.1G011600' => 'ppe', 'Prupe.3G000800' => 'ppe', 'Prupe.3G001100' => 'ppe', 'Prupe.6G072700' => 'ppe', 'Prupe.6G072800' => 'ppe', 'Prupe.6G257300' => 'ppe', 'Prupe.8G033000' => 'ppe', 'Psat0s2633g0080' => 'psa', 'Psat0s3396g0080' => 'psa', 'Psat0s3396g0200' => 'psa', 'Psat3g139080' => 'psa', 'Psat5g285080' => 'psa', 'Psat6g157760' => 'psa', 'Psat6g208440' => 'psa', 'Psat7g215320' => 'psa', 'Psat7g215400' => 'psa', 'Psat7g235600' => 'psa', 'Psat7g235760' => 'psa', 'PSO063G4603' => 'pso', 'PSO210G0182' => 'pso', 'PSO210G0196' => 'pso', 'PSO339G0394' => 'pso', 'PSO339G4127' => 'pso', 'PSO513G0064' => 'pso', 'PSO761G0079' => 'pso', 'QL01p031003' => 'qlo', 'QL01p031078' => 'qlo', 'QL06p003004' => 'qlo', 'QL07p048731' => 'qlo', 'QL09p037427' => 'qlo', 'RcHm_v2.0_Chr3g0466361' => 'rch', 'RcHm_v2.0_Chr3g0485571' => 'rch', 'RcHm_v2.0_Chr4g0416551' => 'rch', 'RcHm_v2.0_Chr5g0065831' => 'rch', 'Rhsim01G0230500' => 'rsi', 'Rhsim05G0194000' => 'rsi', 'Rhsim08G0250400' => 'rsi', 'Sabra02G0131000' => 'sbr', 'Sabra06G0066300' => 'sbr', 'Sabra08G0115500' => 'sbr', 'Sabra09G0023900' => 'sbr', 'Sabra10G0054000' => 'sbr', 'Sabra14G0081500' => 'sbr', 'Sabra16G0147100' => 'sbr', 'SalBow2G2957' => 'sbo', 'SalBow4G3320' => 'sbo', 'SalBow8G1894' => 'sbo', 'Sc07g0007950' => 'sci', 'Sc12g0001360' => 'sci', 'Sc13g0004330' => 'sci', 'Sc20g0005010' => 'sci', 'Sed0000361' => 'sed', 'Sed0001706' => 'sed', 'Sed0002422' => 'sed', 'Sed0004029' => 'sed', 'Sed0004602' => 'sed', 'Sed0004943' => 'sed', 'Sed0008646' => 'sed', 'Sed0023313' => 'sed', 'Sed0024843' => 'sed', 'SEGI_00081' => 'sgi', 'SEGI_00947' => 'sgi', 'SEGI_04046' => 'sgi', 'SEGI_06880' => 'sgi', 'SEGI_09736' => 'sgi', 'SEGI_12741' => 'sgi', 'SEGI_14530' => 'sgi', 'SEGI_20705' => 'sgi', 'SEGI_26088' => 'sgi', 'SEGI_28323' => 'sgi', 'SEGI_33343' => 'sgi', 'SGA_v2.0_scaffold126G33775' => 'sas', 'SGA_v2.0_scaffold2G01337' => 'sas', 'SGA_v2.0_scaffold38G15006' => 'sas', 'SGA_v2.0_scaffold39G15264' => 'sas', 'SGA_v2.0_scaffold453G51880' => 'sas', 'SHI12696' => 'shi', 'SMO367G1096' => 'smo', 'Solyc01g068630.3' => 'sly', 'Solyc05g011880.3' => 'sly', 'Solyc06g076300.3' => 'sly', 'Solyc09g010940.4' => 'sly', 'Solyc09g075890.3' => 'sly', 'Sopen01g030560' => 'spe', 'Sopen05g006630' => 'spe', 'Sopen06g032720' => 'spe', 'Sopen09g005660' => 'spe', 'Sopen09g030690' => 'spe', 'Sp4g14540' => 'spa', 'Sp4g20030' => 'spa', 'Sp5g01320' => 'spa', 'Sp6g21170' => 'spa', 'Sp6g21180' => 'spa', 'Sp6g21190' => 'spa', 'Sp6g40220' => 'spa', 'TAR362G0122' => 'tar', 'TAR362G1338' => 'tar', 'TAR369G0590' => 'tar', 'TAR371G0824' => 'tar', 'TAR622G1429' => 'tar', 'TAR623G0734' => 'tar', 'TAR625G0441' => 'tar', 'TAR629G0976' => 'tar', 'TAR633G1195' => 'tar', 'TAR636G2660' => 'tar', 'THA.LOC104799440' => 'tha', 'THA.LOC104800966' => 'tha', 'THA.LOC104806559' => 'tha', 'THA.LOC104810765' => 'tha', 'THA.LOC104816266' => 'tha', 'THA.LOC104817419' => 'tha', 'THA.LOC104827021' => 'tha', 'Thecc.01G327400' => 'tca', 'Thecc.04G229200' => 'tca', 'Thecc.05G037400' => 'tca', 'Thecc.09G318600' => 'tca', 'Thecc.09G318700' => 'tca', 'Thhalv10006238m.g' => 'esa', 'Thhalv10014321m.g' => 'esa', 'Thhalv10014335m.g' => 'esa', 'Thhalv10015826m.g' => 'esa', 'Thhalv10017107m.g' => 'esa', 'Thhalv10017180m.g' => 'esa', 'Thhalv10029339m.g' => 'esa', 'TPR.G1699' => 'tpr', 'TPR.G23609' => 'tpr', 'TPR.G3081' => 'tpr', 'TPR.G40397' => 'tpr', 'TPR.G5522' => 'tpr', 'TPR.G5618' => 'tpr', 'TPR.G5626' => 'tpr', 'TWI09G1632' => 'twi', 'TWI23G1230' => 'twi', 'TWI53G1064' => 'twi', 'TWI59G0751' => 'twi', 'TWI74G0947' => 'twi', 'TWI77G0337' => 'twi', 'TWI79G1254' => 'twi', 'unitig_0.g2341' => 'ugi', 'unitig_26.g10006' => 'ugi', 'unitig_26.g10008' => 'ugi', 'unitig_26.g9192' => 'ugi', 'vmacro14547' => 'vma', 'vmacro15333' => 'vma', 'vmacro18743' => 'vma', 'vmacro20166' => 'vma', 'VMungo0331G0523' => 'vmu', 'VMungo0331G1202' => 'vmu', 'VMungo0720G1228' => 'vmu', 'VMungo0720G1514' => 'vmu', 'VMungo1080G0169' => 'vmu', 'VMungo1127G1475' => 'vmu', 'VMungo1383G1208' => 'vmu', 'VMungo1383G1698' => 'vmu', 'Zm00001eb012270' => 'zma', 'Zm00001eb054100' => 'zma', 'Zm00001eb063350' => 'zma', 'Zm00001eb328560' => 'zma', 'Zm00001eb342820' => 'zma', 'Zm00001eb362210' => 'zma', 'Zm00001eb397730' => 'zma', 'Zm00001eb399750' => 'zma' ) $gf_id = 'HOM05D000959' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000959' ) $data_identifier = 'HOM05D000959' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 5, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 5, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 10, 'mbi' => (int) 3, 'mco' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 2, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 3, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 11, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399750' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000959', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '622', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p07100' => 'bna', 'A03p11720' => 'bna', 'A05p08300' => 'bna', 'A05p13380' => 'bna', 'A09p54130' => 'bna', 'A10p16690' => 'bna', 'A10p16700' => 'bna', 'A10p33390' => 'bna', 'Aa31LG10G16020' => 'aar', 'Aa31LG1G11810' => 'aar', 'Aa31LG1G11830' => 'aar', 'Aa31LG1G22510' => 'aar', 'Aa31LG5G4890' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5793' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2310' => 'aag', 'Actinidia08499' => 'ach', 'Actinidia11262' => 'ach', 'Actinidia23926' => 'ach', 'Actinidia34420' => 'ach', 'Actinidia36970' => 'ach', 'Ah.02g111220' => 'amhyb', 'Ah.15g097750' => 'amhyb', 'AL4G27500' => 'aly', 'AL6G11470' => 'aly', 'AL8G35950' => 'aly', 'AL8G35960' => 'aly', 'AL8G35970' => 'aly', 'Aqoxy1G00912' => 'aox', 'Aqoxy2G02253' => 'aox', 'Aqoxy2G02411' => 'aox', 'Aqoxy5G00485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BZ66YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K8ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM4FUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6BF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HFV7XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25JBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0YNNV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MAKK6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P70IT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP2Z6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V61LZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YWP64R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3S9AI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7PGHH' => 'arhy', 'AT2G32150' => 'ath', 'AT3G62040' => 'ath', 'AT5G02230' => 'ath', 'AT5G59480' => 'ath', 'AT5G59490' => 'ath', 'ATR0332G060' => 'atr', 'ATR0559G190' => 'atr', 'ATR0693G294' => 'atr', 'Atru.chr3.3975' => 'acertr', 'Atru.chr3.3976' => 'acertr', 'Atru.chr3.3977' => 'acertr', 'Atru.chr4.2498' => 'acertr', 'Atru.chr5.838' => 'acertr', 'Atru.chr8.1990' => 'acertr', 'Atru.chr8.1991' => 'acertr', 'Atru.chr8.1992' => 'acertr', 'AUR62001759' => 'cqu', 'AUR62009545' => 'cqu', 'AUR62010474' => 'cqu', 'AUR62025820' => 'cqu', 'AUR62030422' => 'cqu', 'AUR62033605' => 'cqu', 'AUR62038615' => 'cqu', 'AUR62041347' => 'cqu', 'BcaB01g04574' => 'bca', 'BcaB02g09263' => 'bca', 'BcaB02g10453' => 'bca', 'BcaB05g22513' => 'bca', 'BcaB08g36253' => 'bca', 'BcaB08g36254' => 'bca', 'BcaC01g06519' => 'bca', 'BcaC02g11889' => 'bca', 'BcaC03g14010' => 'bca', 'BcaC03g18439' => 'bca', 'BcaC04g19765' => 'bca', 'BcaC09g48432' => 'bca', 'BcaNung07302' => 'bca', 'BolC2t06040H' => 'bol', 'BolC2t07346H' => 'bol', 'BolC3t13817H' => 'bol', 'BolC4t22625H' => 'bol', 'BolC4t23297H' => 'bol', 'BolC8t51278H' => 'bol', 'BolC9t58050H' => 'bol', 'BolC9t58051H' => 'bol', 'BolC9t60163H' => 'bol', 'BraA02t04712Z' => 'bra', 'BraA02t05791Z' => 'bra', 'BraA03t10483Z' => 'bra', 'BraA05t19795Z' => 'bra', 'BraA05t20276Z' => 'bra', 'BraA09t40827Z' => 'bra', 'BraA10t43750Z' => 'bra', 'BraA10t43751Z' => 'bra', 'BraA10t45370Z' => 'bra', 'C02p00400' => 'bna', 'C02p12460' => 'bna', 'C03p13680' => 'bna', 'C04p10270' => 'bna', 'C04p17500' => 'bna', 'C08p37010' => 'bna', 'C09p51880' => 'bna', 'C09p51890' => 'bna', 'C09p74300' => 'bna', 'CAN.G179.26' => 'can', 'CAN.G3384.1' => 'can', 'CAN.G394.68' => 'can', 'CAN.G907.13' => 'can', 'CANSAT11G0012' => 'cansat', 'CANSAT25G1586' => 'cansat', 'CANSAT35G0735' => 'cansat', 'CANSAT54G0556' => 'cansat', 'CANSAT64G0356' => 'cansat', 'CANSAT78G2042' => 'cansat', 'CARHR125920' => 'chi', 'CARHR131910' => 'chi', 'CARHR172390' => 'chi', 'CARHR211140' => 'chi', 'CARHR285850' => 'chi', 'CARHR285860' => 'chi', 'Carub.0004s1347' => 'cru', 'Carub.0004s1960' => 'cru', 'Carub.0005s2880' => 'cru', 'Carub.0006s0107' => 'cru', 'Carub.0008s2015' => 'cru', 'Carub.0008s2016' => 'cru', 'Carub.0008s2017' => 'cru', 'Ca_01315_v3' => 'car', 'Ca_05063_v3' => 'car', 'Ca_10231_v3' => 'car', 'Ca_10913_v3' => 'car', 'Ca_19156_v3' => 'car', 'Ca_23644_v3' => 'car', 'Ca_26735_v3' => 'car', 'Cc01_g13130' => 'ccan', 'Cc02_g21690' => 'ccan', 'Cc03_g03600' => 'ccan', 'Cc06_g02510' => 'ccan', 'CDE02G1265' => 'cde', 'CDE05G0415' => 'cde', 'CDE08G1082' => 'cde', 'Cfa005780' => 'cfa', 'Cfa011522' => 'cfa', 'Cfa011523' => 'cfa', 'Cfa015627' => 'cfa', 'Cfa017359' => 'cfa', 'Ciclev10005687m.g' => 'ccl', 'Ciclev10012173m.g' => 'ccl', 'Ciclev10021621m.g' => 'ccl', 'Ciclev10028968m.g' => 'ccl', 'Ciclev10029907m.g' => 'ccl', 'CiPaw.01G164800' => 'cil', 'CiPaw.07G083700' => 'cil', 'CiPaw.07G127000' => 'cil', 'CiPaw.07G136900' => 'cil', 'CiPaw.08G081700' => 'cil', 'CiPaw.09G194600' => 'cil', 'CiPaw.10G146500' => 'cil', 'CiPaw.13G091500' => 'cil', 'CiPaw.13G091600' => 'cil', 'ClCG00G003390' => 'cla', 'ClCG01G007220' => 'cla', 'ClCG03G001370' => 'cla', 'ClCG04G008100' => 'cla', 'ClCG06G006110' => 'cla', 'ClCG06G006130' => 'cla', 'ClCG10G021210' => 'cla', 'COL.COLO4_07648' => 'col', 'COL.COLO4_07650' => 'col', 'COL.COLO4_07651' => 'col', 'COL.COLO4_14780' => 'col', 'COL.COLO4_18546' => 'col', 'COL.COLO4_18547' => 'col', 'COL.COLO4_23103' => 'col', 'COL.COLO4_30419' => 'col', 'COL.COLO4_34232' => 'col', 'Cpa.g.sc169.20' => 'cpa', 'Cpa.g.sc57.45' => 'cpa', 'Cpa.g.sc58.124' => 'cpa', 'Cpa.g.sc58.125' => 'cpa', 'Cpa.g.sc81.118' => 'cpa', 'Cpa.g.sc81.119' => 'cpa', 'Cre12.g524700' => 'cre', 'CsaV3_1G034430' => 'csa', 'CsaV3_1G034440' => 'csa', 'CsaV3_1G034450' => 'csa', 'CsaV3_3G034830' => 'csa', 'CsaV3_4G025090' => 'csa', 'CsaV3_5G018660' => 'csa', 'CsaV3_6G038160' => 'csa', 'CSS0003447' => 'camsi', 'CSS0017840' => 'camsi', 'CSS0019260' => 'camsi', 'CSS0040375' => 'camsi', 'CSS0042533' => 'camsi', 'DCAR_005960' => 'dca', 'DCAR_012104' => 'dca', 'DCAR_012105' => 'dca', 'DCAR_012293' => 'dca', 'DCAR_015632' => 'dca', 'DCAR_024602' => 'dca', 'DCAR_028752' => 'dca', 'Dinv06261' => 'din', 'Dinv13982' => 'din', 'Dinv17029' => 'din', 'Dinv18463' => 'din', 'Dinv33181' => 'din', 'Dinv35585' => 'din', 'Dinv37161' => 'din', 'Dinv42977' => 'din', 'Dinv43122' => 'din', 'Dinv44517' => 'din', 'Duzib093G0256' => 'dzi', 'Duzib106G1254' => 'dzi', 'Duzib128G1789' => 'dzi', 'Duzib133G0633' => 'dzi', 'Duzib138G0510' => 'dzi', 'Duzib150G1084' => 'dzi', 'Duzib168G0488' => 'dzi', 'Duzib168G1523' => 'dzi', 'Duzib170G0133' => 'dzi', 'ECA234G1433' => 'eca', 'ECA236G1432' => 'eca', 'ECA236G2256' => 'eca', 'ECA236G2365' => 'eca', 'ECA236G4830' => 'eca', 'ECA248G1505' => 'eca', 'EL10Ac3g06431' => 'bvu', 'EL10Ac5g12577' => 'bvu', 'EL10Ac6g13533' => 'bvu', 'EL10Ac7g16045' => 'bvu', 'Eucgr.A01281' => 'egr', 'Eucgr.B02326' => 'egr', 'Eucgr.H03532' => 'egr', 'Eucgr.K00553' => 'egr', 'Eucgr.K03116' => 'egr', 'FAN02G3963' => 'fan', 'FAN05G0438' => 'fan', 'FAN09G2434' => 'fan', 'FAN12G3984' => 'fan', 'FAN14G0798' => 'fan', 'FAN17G0652' => 'fan', 'FAN19G1988' => 'fan', 'FAN22G0632' => 'fan', 'FAN23G0387' => 'fan', 'FAN26G1323' => 'fan', 'FAN28G0666' => 'fan', 'FvH4_1g26080' => 'fve', 'FvH4_3g36780' => 'fve', 'FvH4_4g15270' => 'fve', 'FvH4_6g13490' => 'fve', 'Glyma.01G098700' => 'gma', 'Glyma.03G065900' => 'gma', 'Glyma.03G073754' => 'gma', 'Glyma.03G073758' => 'gma', 'Glyma.03G083200' => 'gma', 'Glyma.03G225500' => 'gma', 'Glyma.05G037766' => 'gma', 'Glyma.07G133500' => 'gma', 'Glyma.10G139400' => 'gma', 'Glyma.10G248900' => 'gma', 'Glyma.11G137800' => 'gma', 'Glyma.12G061300' => 'gma', 'Glyma.13G337900' => 'gma', 'Glyma.15G036600' => 'gma', 'Glyma.18G182800' => 'gma', 'Glyma.19G222500' => 'gma', 'Glyma.20G144800' => 'gma', 'Gohir.A01G222000' => 'ghi', 'Gohir.A03G044000' => 'ghi', 'Gohir.A03G044100' => 'ghi', 'Gohir.A04G083100' => 'ghi', 'Gohir.A07G127200' => 'ghi', 'Gohir.A07G132400' => 'ghi', 'Gohir.A08G000700' => 'ghi', 'Gohir.A11G327300' => 'ghi', 'Gohir.D01G211500' => 'ghi', 'Gohir.D03G123400' => 'ghi', 'Gohir.D03G123500' => 'ghi', 'Gohir.D04G121800' => 'ghi', 'Gohir.D07G131500' => 'ghi', 'Gohir.D07G136600' => 'ghi', 'Gohir.D08G011600' => 'ghi', 'Gohir.D11G346200' => 'ghi', 'Gorai.001G142800' => 'gra', 'Gorai.001G148700' => 'gra', 'Gorai.002G257300' => 'gra', 'Gorai.003G130000' => 'gra', 'Gorai.003G130100' => 'gra', 'Gorai.004G005300' => 'gra', 'Gorai.007G376500' => 'gra', 'Gorai.012G104700' => 'gra', 'GSVIVG01017946001' => 'vvi', 'GSVIVG01024928001' => 'vvi', 'GSVIVG01028227001' => 'vvi', 'GSVIVG01034151001' => 'vvi', 'HanXRQChr05g0135031' => 'han', 'HanXRQChr05g0135041' => 'han', 'HanXRQChr05g0140021' => 'han', 'HanXRQChr06g0178981' => 'han', 'HanXRQChr07g0188251' => 'han', 'HanXRQChr08g0235311' => 'han', 'HanXRQChr09g0271011' => 'han', 'HanXRQChr10g0293321' => 'han', 'HanXRQChr13g0388171' => 'han', 'Haze_00916' => 'cav', 'Haze_05063' => 'cav', 'Haze_20814' => 'cav', 'Haze_24128' => 'cav', 'Hma1.2p1_0745F.1_g212010' => 'hma', 'Hma1.2p1_0757F.1_g213260' => 'hma', 'Hma1.2p1_0936F.1_g238840' => 'hma', 'Hma1.2p1_1735F.1_g299890' => 'hma', 'Hma1.2p1_1861F.1_g305685' => 'hma', 'HPP92_003397' => 'vpl', 'HPP92_012597' => 'vpl', 'HPP92_015520' => 'vpl', 'HPP92_015539' => 'vpl', 'HPP92_020373' => 'vpl', 'Hund04938' => 'sun', 'Hund10677' => 'sun', 'Hund11033' => 'sun', 'Hund12155' => 'sun', 'Lalb_Chr01g0022551' => 'lal', 'Lalb_Chr03g0042341' => 'lal', 'Lalb_Chr07g0192931' => 'lal', 'Lalb_Chr12g0209551' => 'lal', 'Lalb_Chr19g0125251' => 'lal', 'Lalb_Chr19g0137891' => 'lal', 'Lalb_Chr21g0304641' => 'lal', 'Lalb_Chr21g0309881' => 'lal', 'Lj1A5T12' => 'lonja', 'Lj1C148G10' => 'lonja', 'Lj2A93T83' => 'lonja', 'Lj3A738G68' => 'lonja', 'Lj3C966T1' => 'lonja', 'Lj3g0018958' => 'lja', 'Lj3g0021831' => 'lja', 'Lj3g0025443' => 'lja', 'Lj4g0026809' => 'lja', 'Lj5g0012558' => 'lja', 'Lj5g0021586' => 'lja', 'Lsat_1_v5_gn_5_156840' => 'lsa', 'Lsat_1_v5_gn_8_73460' => 'lsa', 'Lsat_1_v5_gn_8_73481' => 'lsa', 'Lsat_1_v5_gn_9_31601' => 'lsa', 'Lsat_1_v5_gn_9_77320' => 'lsa', 'Manes.01G171300' => 'mes', 'Manes.01G171400' => 'mes', 'Manes.01G236100' => 'mes', 'Manes.02G130500' => 'mes', 'Manes.02G130600' => 'mes', 'Manes.03G180200' => 'mes', 'Manes.05G007000' => 'mes', 'Manes.08G084400' => 'mes', 'Manes.09G092600' => 'mes', 'Manes.15G027900' => 'mes', 'MBI04_g40948_MAGBIO' => 'mbi', 'MBI14_g12123_MAGBIO' => 'mbi', 'MBI18_g28915_MAGBIO' => 'mbi', 'MCO09G053' => 'mco', 'MCO11G782' => 'mco', 'MCO15G215' => 'mco', 'MD03G1088500' => 'mdo', 'MD03G1088600' => 'mdo', 'MD04G1130800' => 'mdo', 'MD09G1291700' => 'mdo', 'MD11G1097500' => 'mdo', 'MD11G1097600' => 'mdo', 'MD12G1143900' => 'mdo', 'MD13G1191400' => 'mdo', 'MD16G1191500' => 'mdo', 'Medtr1g085570' => 'mtr', 'Medtr1g104610' => 'mtr', 'Medtr2g097520' => 'mtr', 'Medtr4g021800' => 'mtr', 'Medtr4g021825' => 'mtr', 'Medtr4g064270' => 'mtr', 'Medtr4g064380' => 'mtr', 'Medtr7g062150' => 'mtr', 'MELO3C003138.2' => 'cme', 'MELO3C005187.2' => 'cme', 'MELO3C009252.2' => 'cme', 'MELO3C014481.2' => 'cme', 'MELO3C020616.2' => 'cme', 'MELO3C020617.2' => 'cme', 'MELO3C020618.2' => 'cme', 'Migut.G00328' => 'egut', 'Migut.J00320' => 'egut', 'Migut.L01000' => 'egut', 'Migut.L01953' => 'egut', 'MSTRG.10253' => 'ama', 'MSTRG.19077' => 'ama', 'MSTRG.26780' => 'ama', 'MSTRG.4023' => 'ama', 'MSTRG.5655' => 'ama', 'MSTRG.9992' => 'ama', 'Nitab4.5_0000043g0310' => 'nta', 'Nitab4.5_0000463g0080' => 'nta', 'Nitab4.5_0000705g0170' => 'nta', 'Nitab4.5_0001326g0060' => 'nta', 'Nitab4.5_0001628g0030' => 'nta', 'Nitab4.5_0002103g0110' => 'nta', 'Nitab4.5_0002946g0030' => 'nta', 'Nitab4.5_0004639g0030' => 'nta', 'Nn2g11149' => 'nnu', 'Nn2g13389' => 'nnu', 'Nn4g25326' => 'nnu', 'Nn4g26290' => 'nnu', 'Nn5g29865' => 'nnu', 'Oeu004163.1' => 'oeu', 'Oeu006901.1' => 'oeu', 'Oeu010096.1' => 'oeu', 'Oeu024340.1' => 'oeu', 'Oeu048369.1' => 'oeu', 'Os01g0973000' => 'osa', 'Os03g0273800' => 'osa', 'Os03g0701200' => 'osa', 'Os03g0834050' => 'osa', 'Os07g0634400' => 'osa', 'Peaxi162Scf00092g01414' => 'pax', 'Peaxi162Scf00165g00818' => 'pax', 'Peaxi162Scf00309g00516' => 'pax', 'Peaxi162Scf00774g00218' => 'pax', 'PGR004G1824' => 'pgr', 'PGR004G2606' => 'pgr', 'PGR031G2716' => 'pgr', 'PGR102G2460' => 'pgr', 'PGR142G2599' => 'pgr', 'PGSC0003DMG400000843' => 'stu', 'PGSC0003DMG400008829' => 'stu', 'PGSC0003DMG400030418' => 'stu', 'PGSC0003DMG400031834' => 'stu', 'PGSC0003DMG401028300' => 'stu', 'PGSC0003DMG402028300' => 'stu', 'Phvul.001G219300' => 'pvu', 'Phvul.007G056000' => 'pvu', 'Phvul.007G208000' => 'pvu', 'Phvul.008G119500' => 'pvu', 'Phvul.010G011200' => 'pvu', 'Phvul.010G014800' => 'pvu', 'Phvul.011G062900' => 'pvu', 'Phvul.L007043' => 'pvu', 'Potri.001G242300' => 'ptr', 'Potri.002G185300' => 'ptr', 'Potri.006G086900' => 'ptr', 'Potri.008G151700' => 'ptr', 'Potri.009G033500' => 'ptr', 'Potri.010G089300' => 'ptr', 'Potri.014G110800' => 'ptr', 'Pp3c27_8130' => 'ppa', 'Pp3c6_27410' => 'ppa', 'PRCOL_00001659' => 'pco', 'PRCOL_00001927' => 'pco', 'PRCOL_00003649' => 'pco', 'Prupe.1G011600' => 'ppe', 'Prupe.3G000800' => 'ppe', 'Prupe.3G001100' => 'ppe', 'Prupe.6G072700' => 'ppe', 'Prupe.6G072800' => 'ppe', 'Prupe.6G257300' => 'ppe', 'Prupe.8G033000' => 'ppe', 'Psat0s2633g0080' => 'psa', 'Psat0s3396g0080' => 'psa', 'Psat0s3396g0200' => 'psa', 'Psat3g139080' => 'psa', 'Psat5g285080' => 'psa', 'Psat6g157760' => 'psa', 'Psat6g208440' => 'psa', 'Psat7g215320' => 'psa', 'Psat7g215400' => 'psa', 'Psat7g235600' => 'psa', 'Psat7g235760' => 'psa', 'PSO063G4603' => 'pso', 'PSO210G0182' => 'pso', 'PSO210G0196' => 'pso', 'PSO339G0394' => 'pso', 'PSO339G4127' => 'pso', 'PSO513G0064' => 'pso', 'PSO761G0079' => 'pso', 'QL01p031003' => 'qlo', 'QL01p031078' => 'qlo', 'QL06p003004' => 'qlo', 'QL07p048731' => 'qlo', 'QL09p037427' => 'qlo', 'RcHm_v2.0_Chr3g0466361' => 'rch', 'RcHm_v2.0_Chr3g0485571' => 'rch', 'RcHm_v2.0_Chr4g0416551' => 'rch', 'RcHm_v2.0_Chr5g0065831' => 'rch', 'Rhsim01G0230500' => 'rsi', 'Rhsim05G0194000' => 'rsi', 'Rhsim08G0250400' => 'rsi', 'Sabra02G0131000' => 'sbr', 'Sabra06G0066300' => 'sbr', 'Sabra08G0115500' => 'sbr', 'Sabra09G0023900' => 'sbr', 'Sabra10G0054000' => 'sbr', 'Sabra14G0081500' => 'sbr', 'Sabra16G0147100' => 'sbr', 'SalBow2G2957' => 'sbo', 'SalBow4G3320' => 'sbo', 'SalBow8G1894' => 'sbo', 'Sc07g0007950' => 'sci', 'Sc12g0001360' => 'sci', 'Sc13g0004330' => 'sci', 'Sc20g0005010' => 'sci', 'Sed0000361' => 'sed', 'Sed0001706' => 'sed', 'Sed0002422' => 'sed', 'Sed0004029' => 'sed', 'Sed0004602' => 'sed', 'Sed0004943' => 'sed', 'Sed0008646' => 'sed', 'Sed0023313' => 'sed', 'Sed0024843' => 'sed', 'SEGI_00081' => 'sgi', 'SEGI_00947' => 'sgi', 'SEGI_04046' => 'sgi', 'SEGI_06880' => 'sgi', 'SEGI_09736' => 'sgi', 'SEGI_12741' => 'sgi', 'SEGI_14530' => 'sgi', 'SEGI_20705' => 'sgi', 'SEGI_26088' => 'sgi', 'SEGI_28323' => 'sgi', 'SEGI_33343' => 'sgi', 'SGA_v2.0_scaffold126G33775' => 'sas', 'SGA_v2.0_scaffold2G01337' => 'sas', 'SGA_v2.0_scaffold38G15006' => 'sas', 'SGA_v2.0_scaffold39G15264' => 'sas', 'SGA_v2.0_scaffold453G51880' => 'sas', 'SHI12696' => 'shi', 'SMO367G1096' => 'smo', 'Solyc01g068630.3' => 'sly', 'Solyc05g011880.3' => 'sly', 'Solyc06g076300.3' => 'sly', 'Solyc09g010940.4' => 'sly', 'Solyc09g075890.3' => 'sly', 'Sopen01g030560' => 'spe', 'Sopen05g006630' => 'spe', 'Sopen06g032720' => 'spe', 'Sopen09g005660' => 'spe', 'Sopen09g030690' => 'spe', 'Sp4g14540' => 'spa', 'Sp4g20030' => 'spa', 'Sp5g01320' => 'spa', 'Sp6g21170' => 'spa', 'Sp6g21180' => 'spa', 'Sp6g21190' => 'spa', 'Sp6g40220' => 'spa', 'TAR362G0122' => 'tar', 'TAR362G1338' => 'tar', 'TAR369G0590' => 'tar', 'TAR371G0824' => 'tar', 'TAR622G1429' => 'tar', 'TAR623G0734' => 'tar', 'TAR625G0441' => 'tar', 'TAR629G0976' => 'tar', 'TAR633G1195' => 'tar', 'TAR636G2660' => 'tar', 'THA.LOC104799440' => 'tha', 'THA.LOC104800966' => 'tha', 'THA.LOC104806559' => 'tha', 'THA.LOC104810765' => 'tha', 'THA.LOC104816266' => 'tha', 'THA.LOC104817419' => 'tha', 'THA.LOC104827021' => 'tha', 'Thecc.01G327400' => 'tca', 'Thecc.04G229200' => 'tca', 'Thecc.05G037400' => 'tca', 'Thecc.09G318600' => 'tca', 'Thecc.09G318700' => 'tca', 'Thhalv10006238m.g' => 'esa', 'Thhalv10014321m.g' => 'esa', 'Thhalv10014335m.g' => 'esa', 'Thhalv10015826m.g' => 'esa', 'Thhalv10017107m.g' => 'esa', 'Thhalv10017180m.g' => 'esa', 'Thhalv10029339m.g' => 'esa', 'TPR.G1699' => 'tpr', 'TPR.G23609' => 'tpr', 'TPR.G3081' => 'tpr', 'TPR.G40397' => 'tpr', 'TPR.G5522' => 'tpr', 'TPR.G5618' => 'tpr', 'TPR.G5626' => 'tpr', 'TWI09G1632' => 'twi', 'TWI23G1230' => 'twi', 'TWI53G1064' => 'twi', 'TWI59G0751' => 'twi', 'TWI74G0947' => 'twi', 'TWI77G0337' => 'twi', 'TWI79G1254' => 'twi', 'unitig_0.g2341' => 'ugi', 'unitig_26.g10006' => 'ugi', 'unitig_26.g10008' => 'ugi', 'unitig_26.g9192' => 'ugi', 'vmacro14547' => 'vma', 'vmacro15333' => 'vma', 'vmacro18743' => 'vma', 'vmacro20166' => 'vma', 'VMungo0331G0523' => 'vmu', 'VMungo0331G1202' => 'vmu', 'VMungo0720G1228' => 'vmu', 'VMungo0720G1514' => 'vmu', 'VMungo1080G0169' => 'vmu', 'VMungo1127G1475' => 'vmu', 'VMungo1383G1208' => 'vmu', 'VMungo1383G1698' => 'vmu', 'Zm00001eb012270' => 'zma', 'Zm00001eb054100' => 'zma', 'Zm00001eb063350' => 'zma', 'Zm00001eb328560' => 'zma', 'Zm00001eb342820' => 'zma', 'Zm00001eb362210' => 'zma', 'Zm00001eb397730' => 'zma', 'Zm00001eb399750' => 'zma' ), 'gf_id' => 'HOM05D000959', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000959' ), 'data_identifier' => 'HOM05D000959', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000959', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '622', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p07100' => 'bna', 'A03p11720' => 'bna', 'A05p08300' => 'bna', 'A05p13380' => 'bna', 'A09p54130' => 'bna', 'A10p16690' => 'bna', 'A10p16700' => 'bna', 'A10p33390' => 'bna', 'Aa31LG10G16020' => 'aar', 'Aa31LG1G11810' => 'aar', 'Aa31LG1G11830' => 'aar', 'Aa31LG1G22510' => 'aar', 'Aa31LG5G4890' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5793' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2310' => 'aag', 'Actinidia08499' => 'ach', 'Actinidia11262' => 'ach', 'Actinidia23926' => 'ach', 'Actinidia34420' => 'ach', 'Actinidia36970' => 'ach', 'Ah.02g111220' => 'amhyb', 'Ah.15g097750' => 'amhyb', 'AL4G27500' => 'aly', 'AL6G11470' => 'aly', 'AL8G35950' => 'aly', 'AL8G35960' => 'aly', 'AL8G35970' => 'aly', 'Aqoxy1G00912' => 'aox', 'Aqoxy2G02253' => 'aox', 'Aqoxy2G02411' => 'aox', 'Aqoxy5G00485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BZ66YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K8ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM4FUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6BF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HFV7XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25JBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0YNNV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MAKK6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P70IT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP2Z6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V61LZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YWP64R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3S9AI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7PGHH' => 'arhy', 'AT2G32150' => 'ath', 'AT3G62040' => 'ath', 'AT5G02230' => 'ath', 'AT5G59480' => 'ath', 'AT5G59490' => 'ath', 'ATR0332G060' => 'atr', 'ATR0559G190' => 'atr', 'ATR0693G294' => 'atr', 'Atru.chr3.3975' => 'acertr', 'Atru.chr3.3976' => 'acertr', 'Atru.chr3.3977' => 'acertr', 'Atru.chr4.2498' => 'acertr', 'Atru.chr5.838' => 'acertr', 'Atru.chr8.1990' => 'acertr', 'Atru.chr8.1991' => 'acertr', 'Atru.chr8.1992' => 'acertr', 'AUR62001759' => 'cqu', 'AUR62009545' => 'cqu', 'AUR62010474' => 'cqu', 'AUR62025820' => 'cqu', 'AUR62030422' => 'cqu', 'AUR62033605' => 'cqu', 'AUR62038615' => 'cqu', 'AUR62041347' => 'cqu', 'BcaB01g04574' => 'bca', 'BcaB02g09263' => 'bca', 'BcaB02g10453' => 'bca', 'BcaB05g22513' => 'bca', 'BcaB08g36253' => 'bca', 'BcaB08g36254' => 'bca', 'BcaC01g06519' => 'bca', 'BcaC02g11889' => 'bca', 'BcaC03g14010' => 'bca', 'BcaC03g18439' => 'bca', 'BcaC04g19765' => 'bca', 'BcaC09g48432' => 'bca', 'BcaNung07302' => 'bca', 'BolC2t06040H' => 'bol', 'BolC2t07346H' => 'bol', 'BolC3t13817H' => 'bol', 'BolC4t22625H' => 'bol', 'BolC4t23297H' => 'bol', 'BolC8t51278H' => 'bol', 'BolC9t58050H' => 'bol', 'BolC9t58051H' => 'bol', 'BolC9t60163H' => 'bol', 'BraA02t04712Z' => 'bra', 'BraA02t05791Z' => 'bra', 'BraA03t10483Z' => 'bra', 'BraA05t19795Z' => 'bra', 'BraA05t20276Z' => 'bra', 'BraA09t40827Z' => 'bra', 'BraA10t43750Z' => 'bra', 'BraA10t43751Z' => 'bra', 'BraA10t45370Z' => 'bra', 'C02p00400' => 'bna', 'C02p12460' => 'bna', 'C03p13680' => 'bna', 'C04p10270' => 'bna', 'C04p17500' => 'bna', 'C08p37010' => 'bna', 'C09p51880' => 'bna', 'C09p51890' => 'bna', 'C09p74300' => 'bna', 'CAN.G179.26' => 'can', 'CAN.G3384.1' => 'can', 'CAN.G394.68' => 'can', 'CAN.G907.13' => 'can', 'CANSAT11G0012' => 'cansat', 'CANSAT25G1586' => 'cansat', 'CANSAT35G0735' => 'cansat', 'CANSAT54G0556' => 'cansat', 'CANSAT64G0356' => 'cansat', 'CANSAT78G2042' => 'cansat', 'CARHR125920' => 'chi', 'CARHR131910' => 'chi', 'CARHR172390' => 'chi', 'CARHR211140' => 'chi', 'CARHR285850' => 'chi', 'CARHR285860' => 'chi', 'Carub.0004s1347' => 'cru', 'Carub.0004s1960' => 'cru', 'Carub.0005s2880' => 'cru', 'Carub.0006s0107' => 'cru', 'Carub.0008s2015' => 'cru', 'Carub.0008s2016' => 'cru', 'Carub.0008s2017' => 'cru', 'Ca_01315_v3' => 'car', 'Ca_05063_v3' => 'car', 'Ca_10231_v3' => 'car', 'Ca_10913_v3' => 'car', 'Ca_19156_v3' => 'car', 'Ca_23644_v3' => 'car', 'Ca_26735_v3' => 'car', 'Cc01_g13130' => 'ccan', 'Cc02_g21690' => 'ccan', 'Cc03_g03600' => 'ccan', 'Cc06_g02510' => 'ccan', 'CDE02G1265' => 'cde', 'CDE05G0415' => 'cde', 'CDE08G1082' => 'cde', 'Cfa005780' => 'cfa', 'Cfa011522' => 'cfa', 'Cfa011523' => 'cfa', 'Cfa015627' => 'cfa', 'Cfa017359' => 'cfa', 'Ciclev10005687m.g' => 'ccl', 'Ciclev10012173m.g' => 'ccl', 'Ciclev10021621m.g' => 'ccl', 'Ciclev10028968m.g' => 'ccl', 'Ciclev10029907m.g' => 'ccl', 'CiPaw.01G164800' => 'cil', 'CiPaw.07G083700' => 'cil', 'CiPaw.07G127000' => 'cil', 'CiPaw.07G136900' => 'cil', 'CiPaw.08G081700' => 'cil', 'CiPaw.09G194600' => 'cil', 'CiPaw.10G146500' => 'cil', 'CiPaw.13G091500' => 'cil', 'CiPaw.13G091600' => 'cil', 'ClCG00G003390' => 'cla', 'ClCG01G007220' => 'cla', 'ClCG03G001370' => 'cla', 'ClCG04G008100' => 'cla', 'ClCG06G006110' => 'cla', 'ClCG06G006130' => 'cla', 'ClCG10G021210' => 'cla', 'COL.COLO4_07648' => 'col', 'COL.COLO4_07650' => 'col', 'COL.COLO4_07651' => 'col', 'COL.COLO4_14780' => 'col', 'COL.COLO4_18546' => 'col', 'COL.COLO4_18547' => 'col', 'COL.COLO4_23103' => 'col', 'COL.COLO4_30419' => 'col', 'COL.COLO4_34232' => 'col', 'Cpa.g.sc169.20' => 'cpa', 'Cpa.g.sc57.45' => 'cpa', 'Cpa.g.sc58.124' => 'cpa', 'Cpa.g.sc58.125' => 'cpa', 'Cpa.g.sc81.118' => 'cpa', 'Cpa.g.sc81.119' => 'cpa', 'Cre12.g524700' => 'cre', 'CsaV3_1G034430' => 'csa', 'CsaV3_1G034440' => 'csa', 'CsaV3_1G034450' => 'csa', 'CsaV3_3G034830' => 'csa', 'CsaV3_4G025090' => 'csa', 'CsaV3_5G018660' => 'csa', 'CsaV3_6G038160' => 'csa', 'CSS0003447' => 'camsi', 'CSS0017840' => 'camsi', 'CSS0019260' => 'camsi', 'CSS0040375' => 'camsi', 'CSS0042533' => 'camsi', 'DCAR_005960' => 'dca', 'DCAR_012104' => 'dca', 'DCAR_012105' => 'dca', 'DCAR_012293' => 'dca', 'DCAR_015632' => 'dca', 'DCAR_024602' => 'dca', 'DCAR_028752' => 'dca', 'Dinv06261' => 'din', 'Dinv13982' => 'din', 'Dinv17029' => 'din', 'Dinv18463' => 'din', 'Dinv33181' => 'din', 'Dinv35585' => 'din', 'Dinv37161' => 'din', 'Dinv42977' => 'din', 'Dinv43122' => 'din', 'Dinv44517' => 'din', 'Duzib093G0256' => 'dzi', 'Duzib106G1254' => 'dzi', 'Duzib128G1789' => 'dzi', 'Duzib133G0633' => 'dzi', 'Duzib138G0510' => 'dzi', 'Duzib150G1084' => 'dzi', 'Duzib168G0488' => 'dzi', 'Duzib168G1523' => 'dzi', 'Duzib170G0133' => 'dzi', 'ECA234G1433' => 'eca', 'ECA236G1432' => 'eca', 'ECA236G2256' => 'eca', 'ECA236G2365' => 'eca', 'ECA236G4830' => 'eca', 'ECA248G1505' => 'eca', 'EL10Ac3g06431' => 'bvu', 'EL10Ac5g12577' => 'bvu', 'EL10Ac6g13533' => 'bvu', 'EL10Ac7g16045' => 'bvu', 'Eucgr.A01281' => 'egr', 'Eucgr.B02326' => 'egr', 'Eucgr.H03532' => 'egr', 'Eucgr.K00553' => 'egr', 'Eucgr.K03116' => 'egr', 'FAN02G3963' => 'fan', 'FAN05G0438' => 'fan', 'FAN09G2434' => 'fan', 'FAN12G3984' => 'fan', 'FAN14G0798' => 'fan', 'FAN17G0652' => 'fan', 'FAN19G1988' => 'fan', 'FAN22G0632' => 'fan', 'FAN23G0387' => 'fan', 'FAN26G1323' => 'fan', 'FAN28G0666' => 'fan', 'FvH4_1g26080' => 'fve', 'FvH4_3g36780' => 'fve', 'FvH4_4g15270' => 'fve', 'FvH4_6g13490' => 'fve', 'Glyma.01G098700' => 'gma', 'Glyma.03G065900' => 'gma', 'Glyma.03G073754' => 'gma', 'Glyma.03G073758' => 'gma', 'Glyma.03G083200' => 'gma', 'Glyma.03G225500' => 'gma', 'Glyma.05G037766' => 'gma', 'Glyma.07G133500' => 'gma', 'Glyma.10G139400' => 'gma', 'Glyma.10G248900' => 'gma', 'Glyma.11G137800' => 'gma', 'Glyma.12G061300' => 'gma', 'Glyma.13G337900' => 'gma', 'Glyma.15G036600' => 'gma', 'Glyma.18G182800' => 'gma', 'Glyma.19G222500' => 'gma', 'Glyma.20G144800' => 'gma', 'Gohir.A01G222000' => 'ghi', 'Gohir.A03G044000' => 'ghi', 'Gohir.A03G044100' => 'ghi', 'Gohir.A04G083100' => 'ghi', 'Gohir.A07G127200' => 'ghi', 'Gohir.A07G132400' => 'ghi', 'Gohir.A08G000700' => 'ghi', 'Gohir.A11G327300' => 'ghi', 'Gohir.D01G211500' => 'ghi', 'Gohir.D03G123400' => 'ghi', 'Gohir.D03G123500' => 'ghi', 'Gohir.D04G121800' => 'ghi', 'Gohir.D07G131500' => 'ghi', 'Gohir.D07G136600' => 'ghi', 'Gohir.D08G011600' => 'ghi', 'Gohir.D11G346200' => 'ghi', 'Gorai.001G142800' => 'gra', 'Gorai.001G148700' => 'gra', 'Gorai.002G257300' => 'gra', 'Gorai.003G130000' => 'gra', 'Gorai.003G130100' => 'gra', 'Gorai.004G005300' => 'gra', 'Gorai.007G376500' => 'gra', 'Gorai.012G104700' => 'gra', 'GSVIVG01017946001' => 'vvi', 'GSVIVG01024928001' => 'vvi', 'GSVIVG01028227001' => 'vvi', 'GSVIVG01034151001' => 'vvi', 'HanXRQChr05g0135031' => 'han', 'HanXRQChr05g0135041' => 'han', 'HanXRQChr05g0140021' => 'han', 'HanXRQChr06g0178981' => 'han', 'HanXRQChr07g0188251' => 'han', 'HanXRQChr08g0235311' => 'han', 'HanXRQChr09g0271011' => 'han', 'HanXRQChr10g0293321' => 'han', 'HanXRQChr13g0388171' => 'han', 'Haze_00916' => 'cav', 'Haze_05063' => 'cav', 'Haze_20814' => 'cav', 'Haze_24128' => 'cav', 'Hma1.2p1_0745F.1_g212010' => 'hma', 'Hma1.2p1_0757F.1_g213260' => 'hma', 'Hma1.2p1_0936F.1_g238840' => 'hma', 'Hma1.2p1_1735F.1_g299890' => 'hma', 'Hma1.2p1_1861F.1_g305685' => 'hma', 'HPP92_003397' => 'vpl', 'HPP92_012597' => 'vpl', 'HPP92_015520' => 'vpl', 'HPP92_015539' => 'vpl', 'HPP92_020373' => 'vpl', 'Hund04938' => 'sun', 'Hund10677' => 'sun', 'Hund11033' => 'sun', 'Hund12155' => 'sun', 'Lalb_Chr01g0022551' => 'lal', 'Lalb_Chr03g0042341' => 'lal', 'Lalb_Chr07g0192931' => 'lal', 'Lalb_Chr12g0209551' => 'lal', 'Lalb_Chr19g0125251' => 'lal', 'Lalb_Chr19g0137891' => 'lal', 'Lalb_Chr21g0304641' => 'lal', 'Lalb_Chr21g0309881' => 'lal', 'Lj1A5T12' => 'lonja', 'Lj1C148G10' => 'lonja', 'Lj2A93T83' => 'lonja', 'Lj3A738G68' => 'lonja', 'Lj3C966T1' => 'lonja', 'Lj3g0018958' => 'lja', 'Lj3g0021831' => 'lja', 'Lj3g0025443' => 'lja', 'Lj4g0026809' => 'lja', 'Lj5g0012558' => 'lja', 'Lj5g0021586' => 'lja', 'Lsat_1_v5_gn_5_156840' => 'lsa', 'Lsat_1_v5_gn_8_73460' => 'lsa', 'Lsat_1_v5_gn_8_73481' => 'lsa', 'Lsat_1_v5_gn_9_31601' => 'lsa', 'Lsat_1_v5_gn_9_77320' => 'lsa', 'Manes.01G171300' => 'mes', 'Manes.01G171400' => 'mes', 'Manes.01G236100' => 'mes', 'Manes.02G130500' => 'mes', 'Manes.02G130600' => 'mes', 'Manes.03G180200' => 'mes', 'Manes.05G007000' => 'mes', 'Manes.08G084400' => 'mes', 'Manes.09G092600' => 'mes', 'Manes.15G027900' => 'mes', 'MBI04_g40948_MAGBIO' => 'mbi', 'MBI14_g12123_MAGBIO' => 'mbi', 'MBI18_g28915_MAGBIO' => 'mbi', 'MCO09G053' => 'mco', 'MCO11G782' => 'mco', 'MCO15G215' => 'mco', 'MD03G1088500' => 'mdo', 'MD03G1088600' => 'mdo', 'MD04G1130800' => 'mdo', 'MD09G1291700' => 'mdo', 'MD11G1097500' => 'mdo', 'MD11G1097600' => 'mdo', 'MD12G1143900' => 'mdo', 'MD13G1191400' => 'mdo', 'MD16G1191500' => 'mdo', 'Medtr1g085570' => 'mtr', 'Medtr1g104610' => 'mtr', 'Medtr2g097520' => 'mtr', 'Medtr4g021800' => 'mtr', 'Medtr4g021825' => 'mtr', 'Medtr4g064270' => 'mtr', 'Medtr4g064380' => 'mtr', 'Medtr7g062150' => 'mtr', 'MELO3C003138.2' => 'cme', 'MELO3C005187.2' => 'cme', 'MELO3C009252.2' => 'cme', 'MELO3C014481.2' => 'cme', 'MELO3C020616.2' => 'cme', 'MELO3C020617.2' => 'cme', 'MELO3C020618.2' => 'cme', 'Migut.G00328' => 'egut', 'Migut.J00320' => 'egut', 'Migut.L01000' => 'egut', 'Migut.L01953' => 'egut', 'MSTRG.10253' => 'ama', 'MSTRG.19077' => 'ama', 'MSTRG.26780' => 'ama', 'MSTRG.4023' => 'ama', 'MSTRG.5655' => 'ama', 'MSTRG.9992' => 'ama', 'Nitab4.5_0000043g0310' => 'nta', 'Nitab4.5_0000463g0080' => 'nta', 'Nitab4.5_0000705g0170' => 'nta', 'Nitab4.5_0001326g0060' => 'nta', 'Nitab4.5_0001628g0030' => 'nta', 'Nitab4.5_0002103g0110' => 'nta', 'Nitab4.5_0002946g0030' => 'nta', 'Nitab4.5_0004639g0030' => 'nta', 'Nn2g11149' => 'nnu', 'Nn2g13389' => 'nnu', 'Nn4g25326' => 'nnu', 'Nn4g26290' => 'nnu', 'Nn5g29865' => 'nnu', 'Oeu004163.1' => 'oeu', 'Oeu006901.1' => 'oeu', 'Oeu010096.1' => 'oeu', 'Oeu024340.1' => 'oeu', 'Oeu048369.1' => 'oeu', 'Os01g0973000' => 'osa', 'Os03g0273800' => 'osa', 'Os03g0701200' => 'osa', 'Os03g0834050' => 'osa', 'Os07g0634400' => 'osa', 'Peaxi162Scf00092g01414' => 'pax', 'Peaxi162Scf00165g00818' => 'pax', 'Peaxi162Scf00309g00516' => 'pax', 'Peaxi162Scf00774g00218' => 'pax', 'PGR004G1824' => 'pgr', 'PGR004G2606' => 'pgr', 'PGR031G2716' => 'pgr', 'PGR102G2460' => 'pgr', 'PGR142G2599' => 'pgr', 'PGSC0003DMG400000843' => 'stu', 'PGSC0003DMG400008829' => 'stu', 'PGSC0003DMG400030418' => 'stu', 'PGSC0003DMG400031834' => 'stu', 'PGSC0003DMG401028300' => 'stu', 'PGSC0003DMG402028300' => 'stu', 'Phvul.001G219300' => 'pvu', 'Phvul.007G056000' => 'pvu', 'Phvul.007G208000' => 'pvu', 'Phvul.008G119500' => 'pvu', 'Phvul.010G011200' => 'pvu', 'Phvul.010G014800' => 'pvu', 'Phvul.011G062900' => 'pvu', 'Phvul.L007043' => 'pvu', 'Potri.001G242300' => 'ptr', 'Potri.002G185300' => 'ptr', 'Potri.006G086900' => 'ptr', 'Potri.008G151700' => 'ptr', 'Potri.009G033500' => 'ptr', 'Potri.010G089300' => 'ptr', 'Potri.014G110800' => 'ptr', 'Pp3c27_8130' => 'ppa', 'Pp3c6_27410' => 'ppa', 'PRCOL_00001659' => 'pco', 'PRCOL_00001927' => 'pco', 'PRCOL_00003649' => 'pco', 'Prupe.1G011600' => 'ppe', 'Prupe.3G000800' => 'ppe', 'Prupe.3G001100' => 'ppe', 'Prupe.6G072700' => 'ppe', 'Prupe.6G072800' => 'ppe', 'Prupe.6G257300' => 'ppe', 'Prupe.8G033000' => 'ppe', 'Psat0s2633g0080' => 'psa', 'Psat0s3396g0080' => 'psa', 'Psat0s3396g0200' => 'psa', 'Psat3g139080' => 'psa', 'Psat5g285080' => 'psa', 'Psat6g157760' => 'psa', 'Psat6g208440' => 'psa', 'Psat7g215320' => 'psa', 'Psat7g215400' => 'psa', 'Psat7g235600' => 'psa', 'Psat7g235760' => 'psa', 'PSO063G4603' => 'pso', 'PSO210G0182' => 'pso', 'PSO210G0196' => 'pso', 'PSO339G0394' => 'pso', 'PSO339G4127' => 'pso', 'PSO513G0064' => 'pso', 'PSO761G0079' => 'pso', 'QL01p031003' => 'qlo', 'QL01p031078' => 'qlo', 'QL06p003004' => 'qlo', 'QL07p048731' => 'qlo', 'QL09p037427' => 'qlo', 'RcHm_v2.0_Chr3g0466361' => 'rch', 'RcHm_v2.0_Chr3g0485571' => 'rch', 'RcHm_v2.0_Chr4g0416551' => 'rch', 'RcHm_v2.0_Chr5g0065831' => 'rch', 'Rhsim01G0230500' => 'rsi', 'Rhsim05G0194000' => 'rsi', 'Rhsim08G0250400' => 'rsi', 'Sabra02G0131000' => 'sbr', 'Sabra06G0066300' => 'sbr', 'Sabra08G0115500' => 'sbr', 'Sabra09G0023900' => 'sbr', 'Sabra10G0054000' => 'sbr', 'Sabra14G0081500' => 'sbr', 'Sabra16G0147100' => 'sbr', 'SalBow2G2957' => 'sbo', 'SalBow4G3320' => 'sbo', 'SalBow8G1894' => 'sbo', 'Sc07g0007950' => 'sci', 'Sc12g0001360' => 'sci', 'Sc13g0004330' => 'sci', 'Sc20g0005010' => 'sci', 'Sed0000361' => 'sed', 'Sed0001706' => 'sed', 'Sed0002422' => 'sed', 'Sed0004029' => 'sed', 'Sed0004602' => 'sed', 'Sed0004943' => 'sed', 'Sed0008646' => 'sed', 'Sed0023313' => 'sed', 'Sed0024843' => 'sed', 'SEGI_00081' => 'sgi', 'SEGI_00947' => 'sgi', 'SEGI_04046' => 'sgi', 'SEGI_06880' => 'sgi', 'SEGI_09736' => 'sgi', 'SEGI_12741' => 'sgi', 'SEGI_14530' => 'sgi', 'SEGI_20705' => 'sgi', 'SEGI_26088' => 'sgi', 'SEGI_28323' => 'sgi', 'SEGI_33343' => 'sgi', 'SGA_v2.0_scaffold126G33775' => 'sas', 'SGA_v2.0_scaffold2G01337' => 'sas', 'SGA_v2.0_scaffold38G15006' => 'sas', 'SGA_v2.0_scaffold39G15264' => 'sas', 'SGA_v2.0_scaffold453G51880' => 'sas', 'SHI12696' => 'shi', 'SMO367G1096' => 'smo', 'Solyc01g068630.3' => 'sly', 'Solyc05g011880.3' => 'sly', 'Solyc06g076300.3' => 'sly', 'Solyc09g010940.4' => 'sly', 'Solyc09g075890.3' => 'sly', 'Sopen01g030560' => 'spe', 'Sopen05g006630' => 'spe', 'Sopen06g032720' => 'spe', 'Sopen09g005660' => 'spe', 'Sopen09g030690' => 'spe', 'Sp4g14540' => 'spa', 'Sp4g20030' => 'spa', 'Sp5g01320' => 'spa', 'Sp6g21170' => 'spa', 'Sp6g21180' => 'spa', 'Sp6g21190' => 'spa', 'Sp6g40220' => 'spa', 'TAR362G0122' => 'tar', 'TAR362G1338' => 'tar', 'TAR369G0590' => 'tar', 'TAR371G0824' => 'tar', 'TAR622G1429' => 'tar', 'TAR623G0734' => 'tar', 'TAR625G0441' => 'tar', 'TAR629G0976' => 'tar', 'TAR633G1195' => 'tar', 'TAR636G2660' => 'tar', 'THA.LOC104799440' => 'tha', 'THA.LOC104800966' => 'tha', 'THA.LOC104806559' => 'tha', 'THA.LOC104810765' => 'tha', 'THA.LOC104816266' => 'tha', 'THA.LOC104817419' => 'tha', 'THA.LOC104827021' => 'tha', 'Thecc.01G327400' => 'tca', 'Thecc.04G229200' => 'tca', 'Thecc.05G037400' => 'tca', 'Thecc.09G318600' => 'tca', 'Thecc.09G318700' => 'tca', 'Thhalv10006238m.g' => 'esa', 'Thhalv10014321m.g' => 'esa', 'Thhalv10014335m.g' => 'esa', 'Thhalv10015826m.g' => 'esa', 'Thhalv10017107m.g' => 'esa', 'Thhalv10017180m.g' => 'esa', 'Thhalv10029339m.g' => 'esa', 'TPR.G1699' => 'tpr', 'TPR.G23609' => 'tpr', 'TPR.G3081' => 'tpr', 'TPR.G40397' => 'tpr', 'TPR.G5522' => 'tpr', 'TPR.G5618' => 'tpr', 'TPR.G5626' => 'tpr', 'TWI09G1632' => 'twi', 'TWI23G1230' => 'twi', 'TWI53G1064' => 'twi', 'TWI59G0751' => 'twi', 'TWI74G0947' => 'twi', 'TWI77G0337' => 'twi', 'TWI79G1254' => 'twi', 'unitig_0.g2341' => 'ugi', 'unitig_26.g10006' => 'ugi', 'unitig_26.g10008' => 'ugi', 'unitig_26.g9192' => 'ugi', 'vmacro14547' => 'vma', 'vmacro15333' => 'vma', 'vmacro18743' => 'vma', 'vmacro20166' => 'vma', 'VMungo0331G0523' => 'vmu', 'VMungo0331G1202' => 'vmu', 'VMungo0720G1228' => 'vmu', 'VMungo0720G1514' => 'vmu', 'VMungo1080G0169' => 'vmu', 'VMungo1127G1475' => 'vmu', 'VMungo1383G1208' => 'vmu', 'VMungo1383G1698' => 'vmu', 'Zm00001eb012270' => 'zma', 'Zm00001eb054100' => 'zma', 'Zm00001eb063350' => 'zma', 'Zm00001eb328560' => 'zma', 'Zm00001eb342820' => 'zma', 'Zm00001eb362210' => 'zma', 'Zm00001eb397730' => 'zma', 'Zm00001eb399750' => 'zma' ) $gf_id = 'HOM05D000959' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000959' ) $data_identifier = 'HOM05D000959' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 5, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 5, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 10, 'mbi' => (int) 3, 'mco' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 2, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 3, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 11, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399750' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000959', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '622', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p07100' => 'bna', 'A03p11720' => 'bna', 'A05p08300' => 'bna', 'A05p13380' => 'bna', 'A09p54130' => 'bna', 'A10p16690' => 'bna', 'A10p16700' => 'bna', 'A10p33390' => 'bna', 'Aa31LG10G16020' => 'aar', 'Aa31LG1G11810' => 'aar', 'Aa31LG1G11830' => 'aar', 'Aa31LG1G22510' => 'aar', 'Aa31LG5G4890' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5793' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2310' => 'aag', 'Actinidia08499' => 'ach', 'Actinidia11262' => 'ach', 'Actinidia23926' => 'ach', 'Actinidia34420' => 'ach', 'Actinidia36970' => 'ach', 'Ah.02g111220' => 'amhyb', 'Ah.15g097750' => 'amhyb', 'AL4G27500' => 'aly', 'AL6G11470' => 'aly', 'AL8G35950' => 'aly', 'AL8G35960' => 'aly', 'AL8G35970' => 'aly', 'Aqoxy1G00912' => 'aox', 'Aqoxy2G02253' => 'aox', 'Aqoxy2G02411' => 'aox', 'Aqoxy5G00485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BZ66YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K8ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM4FUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6BF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HFV7XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25JBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0YNNV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MAKK6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P70IT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP2Z6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V61LZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YWP64R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3S9AI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7PGHH' => 'arhy', 'AT2G32150' => 'ath', 'AT3G62040' => 'ath', 'AT5G02230' => 'ath', 'AT5G59480' => 'ath', 'AT5G59490' => 'ath', 'ATR0332G060' => 'atr', 'ATR0559G190' => 'atr', 'ATR0693G294' => 'atr', 'Atru.chr3.3975' => 'acertr', 'Atru.chr3.3976' => 'acertr', 'Atru.chr3.3977' => 'acertr', 'Atru.chr4.2498' => 'acertr', 'Atru.chr5.838' => 'acertr', 'Atru.chr8.1990' => 'acertr', 'Atru.chr8.1991' => 'acertr', 'Atru.chr8.1992' => 'acertr', 'AUR62001759' => 'cqu', 'AUR62009545' => 'cqu', 'AUR62010474' => 'cqu', 'AUR62025820' => 'cqu', 'AUR62030422' => 'cqu', 'AUR62033605' => 'cqu', 'AUR62038615' => 'cqu', 'AUR62041347' => 'cqu', 'BcaB01g04574' => 'bca', 'BcaB02g09263' => 'bca', 'BcaB02g10453' => 'bca', 'BcaB05g22513' => 'bca', 'BcaB08g36253' => 'bca', 'BcaB08g36254' => 'bca', 'BcaC01g06519' => 'bca', 'BcaC02g11889' => 'bca', 'BcaC03g14010' => 'bca', 'BcaC03g18439' => 'bca', 'BcaC04g19765' => 'bca', 'BcaC09g48432' => 'bca', 'BcaNung07302' => 'bca', 'BolC2t06040H' => 'bol', 'BolC2t07346H' => 'bol', 'BolC3t13817H' => 'bol', 'BolC4t22625H' => 'bol', 'BolC4t23297H' => 'bol', 'BolC8t51278H' => 'bol', 'BolC9t58050H' => 'bol', 'BolC9t58051H' => 'bol', 'BolC9t60163H' => 'bol', 'BraA02t04712Z' => 'bra', 'BraA02t05791Z' => 'bra', 'BraA03t10483Z' => 'bra', 'BraA05t19795Z' => 'bra', 'BraA05t20276Z' => 'bra', 'BraA09t40827Z' => 'bra', 'BraA10t43750Z' => 'bra', 'BraA10t43751Z' => 'bra', 'BraA10t45370Z' => 'bra', 'C02p00400' => 'bna', 'C02p12460' => 'bna', 'C03p13680' => 'bna', 'C04p10270' => 'bna', 'C04p17500' => 'bna', 'C08p37010' => 'bna', 'C09p51880' => 'bna', 'C09p51890' => 'bna', 'C09p74300' => 'bna', 'CAN.G179.26' => 'can', 'CAN.G3384.1' => 'can', 'CAN.G394.68' => 'can', 'CAN.G907.13' => 'can', 'CANSAT11G0012' => 'cansat', 'CANSAT25G1586' => 'cansat', 'CANSAT35G0735' => 'cansat', 'CANSAT54G0556' => 'cansat', 'CANSAT64G0356' => 'cansat', 'CANSAT78G2042' => 'cansat', 'CARHR125920' => 'chi', 'CARHR131910' => 'chi', 'CARHR172390' => 'chi', 'CARHR211140' => 'chi', 'CARHR285850' => 'chi', 'CARHR285860' => 'chi', 'Carub.0004s1347' => 'cru', 'Carub.0004s1960' => 'cru', 'Carub.0005s2880' => 'cru', 'Carub.0006s0107' => 'cru', 'Carub.0008s2015' => 'cru', 'Carub.0008s2016' => 'cru', 'Carub.0008s2017' => 'cru', 'Ca_01315_v3' => 'car', 'Ca_05063_v3' => 'car', 'Ca_10231_v3' => 'car', 'Ca_10913_v3' => 'car', 'Ca_19156_v3' => 'car', 'Ca_23644_v3' => 'car', 'Ca_26735_v3' => 'car', 'Cc01_g13130' => 'ccan', 'Cc02_g21690' => 'ccan', 'Cc03_g03600' => 'ccan', 'Cc06_g02510' => 'ccan', 'CDE02G1265' => 'cde', 'CDE05G0415' => 'cde', 'CDE08G1082' => 'cde', 'Cfa005780' => 'cfa', 'Cfa011522' => 'cfa', 'Cfa011523' => 'cfa', 'Cfa015627' => 'cfa', 'Cfa017359' => 'cfa', 'Ciclev10005687m.g' => 'ccl', 'Ciclev10012173m.g' => 'ccl', 'Ciclev10021621m.g' => 'ccl', 'Ciclev10028968m.g' => 'ccl', 'Ciclev10029907m.g' => 'ccl', 'CiPaw.01G164800' => 'cil', 'CiPaw.07G083700' => 'cil', 'CiPaw.07G127000' => 'cil', 'CiPaw.07G136900' => 'cil', 'CiPaw.08G081700' => 'cil', 'CiPaw.09G194600' => 'cil', 'CiPaw.10G146500' => 'cil', 'CiPaw.13G091500' => 'cil', 'CiPaw.13G091600' => 'cil', 'ClCG00G003390' => 'cla', 'ClCG01G007220' => 'cla', 'ClCG03G001370' => 'cla', 'ClCG04G008100' => 'cla', 'ClCG06G006110' => 'cla', 'ClCG06G006130' => 'cla', 'ClCG10G021210' => 'cla', 'COL.COLO4_07648' => 'col', 'COL.COLO4_07650' => 'col', 'COL.COLO4_07651' => 'col', 'COL.COLO4_14780' => 'col', 'COL.COLO4_18546' => 'col', 'COL.COLO4_18547' => 'col', 'COL.COLO4_23103' => 'col', 'COL.COLO4_30419' => 'col', 'COL.COLO4_34232' => 'col', 'Cpa.g.sc169.20' => 'cpa', 'Cpa.g.sc57.45' => 'cpa', 'Cpa.g.sc58.124' => 'cpa', 'Cpa.g.sc58.125' => 'cpa', 'Cpa.g.sc81.118' => 'cpa', 'Cpa.g.sc81.119' => 'cpa', 'Cre12.g524700' => 'cre', 'CsaV3_1G034430' => 'csa', 'CsaV3_1G034440' => 'csa', 'CsaV3_1G034450' => 'csa', 'CsaV3_3G034830' => 'csa', 'CsaV3_4G025090' => 'csa', 'CsaV3_5G018660' => 'csa', 'CsaV3_6G038160' => 'csa', 'CSS0003447' => 'camsi', 'CSS0017840' => 'camsi', 'CSS0019260' => 'camsi', 'CSS0040375' => 'camsi', 'CSS0042533' => 'camsi', 'DCAR_005960' => 'dca', 'DCAR_012104' => 'dca', 'DCAR_012105' => 'dca', 'DCAR_012293' => 'dca', 'DCAR_015632' => 'dca', 'DCAR_024602' => 'dca', 'DCAR_028752' => 'dca', 'Dinv06261' => 'din', 'Dinv13982' => 'din', 'Dinv17029' => 'din', 'Dinv18463' => 'din', 'Dinv33181' => 'din', 'Dinv35585' => 'din', 'Dinv37161' => 'din', 'Dinv42977' => 'din', 'Dinv43122' => 'din', 'Dinv44517' => 'din', 'Duzib093G0256' => 'dzi', 'Duzib106G1254' => 'dzi', 'Duzib128G1789' => 'dzi', 'Duzib133G0633' => 'dzi', 'Duzib138G0510' => 'dzi', 'Duzib150G1084' => 'dzi', 'Duzib168G0488' => 'dzi', 'Duzib168G1523' => 'dzi', 'Duzib170G0133' => 'dzi', 'ECA234G1433' => 'eca', 'ECA236G1432' => 'eca', 'ECA236G2256' => 'eca', 'ECA236G2365' => 'eca', 'ECA236G4830' => 'eca', 'ECA248G1505' => 'eca', 'EL10Ac3g06431' => 'bvu', 'EL10Ac5g12577' => 'bvu', 'EL10Ac6g13533' => 'bvu', 'EL10Ac7g16045' => 'bvu', 'Eucgr.A01281' => 'egr', 'Eucgr.B02326' => 'egr', 'Eucgr.H03532' => 'egr', 'Eucgr.K00553' => 'egr', 'Eucgr.K03116' => 'egr', 'FAN02G3963' => 'fan', 'FAN05G0438' => 'fan', 'FAN09G2434' => 'fan', 'FAN12G3984' => 'fan', 'FAN14G0798' => 'fan', 'FAN17G0652' => 'fan', 'FAN19G1988' => 'fan', 'FAN22G0632' => 'fan', 'FAN23G0387' => 'fan', 'FAN26G1323' => 'fan', 'FAN28G0666' => 'fan', 'FvH4_1g26080' => 'fve', 'FvH4_3g36780' => 'fve', 'FvH4_4g15270' => 'fve', 'FvH4_6g13490' => 'fve', 'Glyma.01G098700' => 'gma', 'Glyma.03G065900' => 'gma', 'Glyma.03G073754' => 'gma', 'Glyma.03G073758' => 'gma', 'Glyma.03G083200' => 'gma', 'Glyma.03G225500' => 'gma', 'Glyma.05G037766' => 'gma', 'Glyma.07G133500' => 'gma', 'Glyma.10G139400' => 'gma', 'Glyma.10G248900' => 'gma', 'Glyma.11G137800' => 'gma', 'Glyma.12G061300' => 'gma', 'Glyma.13G337900' => 'gma', 'Glyma.15G036600' => 'gma', 'Glyma.18G182800' => 'gma', 'Glyma.19G222500' => 'gma', 'Glyma.20G144800' => 'gma', 'Gohir.A01G222000' => 'ghi', 'Gohir.A03G044000' => 'ghi', 'Gohir.A03G044100' => 'ghi', 'Gohir.A04G083100' => 'ghi', 'Gohir.A07G127200' => 'ghi', 'Gohir.A07G132400' => 'ghi', 'Gohir.A08G000700' => 'ghi', 'Gohir.A11G327300' => 'ghi', 'Gohir.D01G211500' => 'ghi', 'Gohir.D03G123400' => 'ghi', 'Gohir.D03G123500' => 'ghi', 'Gohir.D04G121800' => 'ghi', 'Gohir.D07G131500' => 'ghi', 'Gohir.D07G136600' => 'ghi', 'Gohir.D08G011600' => 'ghi', 'Gohir.D11G346200' => 'ghi', 'Gorai.001G142800' => 'gra', 'Gorai.001G148700' => 'gra', 'Gorai.002G257300' => 'gra', 'Gorai.003G130000' => 'gra', 'Gorai.003G130100' => 'gra', 'Gorai.004G005300' => 'gra', 'Gorai.007G376500' => 'gra', 'Gorai.012G104700' => 'gra', 'GSVIVG01017946001' => 'vvi', 'GSVIVG01024928001' => 'vvi', 'GSVIVG01028227001' => 'vvi', 'GSVIVG01034151001' => 'vvi', 'HanXRQChr05g0135031' => 'han', 'HanXRQChr05g0135041' => 'han', 'HanXRQChr05g0140021' => 'han', 'HanXRQChr06g0178981' => 'han', 'HanXRQChr07g0188251' => 'han', 'HanXRQChr08g0235311' => 'han', 'HanXRQChr09g0271011' => 'han', 'HanXRQChr10g0293321' => 'han', 'HanXRQChr13g0388171' => 'han', 'Haze_00916' => 'cav', 'Haze_05063' => 'cav', 'Haze_20814' => 'cav', 'Haze_24128' => 'cav', 'Hma1.2p1_0745F.1_g212010' => 'hma', 'Hma1.2p1_0757F.1_g213260' => 'hma', 'Hma1.2p1_0936F.1_g238840' => 'hma', 'Hma1.2p1_1735F.1_g299890' => 'hma', 'Hma1.2p1_1861F.1_g305685' => 'hma', 'HPP92_003397' => 'vpl', 'HPP92_012597' => 'vpl', 'HPP92_015520' => 'vpl', 'HPP92_015539' => 'vpl', 'HPP92_020373' => 'vpl', 'Hund04938' => 'sun', 'Hund10677' => 'sun', 'Hund11033' => 'sun', 'Hund12155' => 'sun', 'Lalb_Chr01g0022551' => 'lal', 'Lalb_Chr03g0042341' => 'lal', 'Lalb_Chr07g0192931' => 'lal', 'Lalb_Chr12g0209551' => 'lal', 'Lalb_Chr19g0125251' => 'lal', 'Lalb_Chr19g0137891' => 'lal', 'Lalb_Chr21g0304641' => 'lal', 'Lalb_Chr21g0309881' => 'lal', 'Lj1A5T12' => 'lonja', 'Lj1C148G10' => 'lonja', 'Lj2A93T83' => 'lonja', 'Lj3A738G68' => 'lonja', 'Lj3C966T1' => 'lonja', 'Lj3g0018958' => 'lja', 'Lj3g0021831' => 'lja', 'Lj3g0025443' => 'lja', 'Lj4g0026809' => 'lja', 'Lj5g0012558' => 'lja', 'Lj5g0021586' => 'lja', 'Lsat_1_v5_gn_5_156840' => 'lsa', 'Lsat_1_v5_gn_8_73460' => 'lsa', 'Lsat_1_v5_gn_8_73481' => 'lsa', 'Lsat_1_v5_gn_9_31601' => 'lsa', 'Lsat_1_v5_gn_9_77320' => 'lsa', 'Manes.01G171300' => 'mes', 'Manes.01G171400' => 'mes', 'Manes.01G236100' => 'mes', 'Manes.02G130500' => 'mes', 'Manes.02G130600' => 'mes', 'Manes.03G180200' => 'mes', 'Manes.05G007000' => 'mes', 'Manes.08G084400' => 'mes', 'Manes.09G092600' => 'mes', 'Manes.15G027900' => 'mes', 'MBI04_g40948_MAGBIO' => 'mbi', 'MBI14_g12123_MAGBIO' => 'mbi', 'MBI18_g28915_MAGBIO' => 'mbi', 'MCO09G053' => 'mco', 'MCO11G782' => 'mco', 'MCO15G215' => 'mco', 'MD03G1088500' => 'mdo', 'MD03G1088600' => 'mdo', 'MD04G1130800' => 'mdo', 'MD09G1291700' => 'mdo', 'MD11G1097500' => 'mdo', 'MD11G1097600' => 'mdo', 'MD12G1143900' => 'mdo', 'MD13G1191400' => 'mdo', 'MD16G1191500' => 'mdo', 'Medtr1g085570' => 'mtr', 'Medtr1g104610' => 'mtr', 'Medtr2g097520' => 'mtr', 'Medtr4g021800' => 'mtr', 'Medtr4g021825' => 'mtr', 'Medtr4g064270' => 'mtr', 'Medtr4g064380' => 'mtr', 'Medtr7g062150' => 'mtr', 'MELO3C003138.2' => 'cme', 'MELO3C005187.2' => 'cme', 'MELO3C009252.2' => 'cme', 'MELO3C014481.2' => 'cme', 'MELO3C020616.2' => 'cme', 'MELO3C020617.2' => 'cme', 'MELO3C020618.2' => 'cme', 'Migut.G00328' => 'egut', 'Migut.J00320' => 'egut', 'Migut.L01000' => 'egut', 'Migut.L01953' => 'egut', 'MSTRG.10253' => 'ama', 'MSTRG.19077' => 'ama', 'MSTRG.26780' => 'ama', 'MSTRG.4023' => 'ama', 'MSTRG.5655' => 'ama', 'MSTRG.9992' => 'ama', 'Nitab4.5_0000043g0310' => 'nta', 'Nitab4.5_0000463g0080' => 'nta', 'Nitab4.5_0000705g0170' => 'nta', 'Nitab4.5_0001326g0060' => 'nta', 'Nitab4.5_0001628g0030' => 'nta', 'Nitab4.5_0002103g0110' => 'nta', 'Nitab4.5_0002946g0030' => 'nta', 'Nitab4.5_0004639g0030' => 'nta', 'Nn2g11149' => 'nnu', 'Nn2g13389' => 'nnu', 'Nn4g25326' => 'nnu', 'Nn4g26290' => 'nnu', 'Nn5g29865' => 'nnu', 'Oeu004163.1' => 'oeu', 'Oeu006901.1' => 'oeu', 'Oeu010096.1' => 'oeu', 'Oeu024340.1' => 'oeu', 'Oeu048369.1' => 'oeu', 'Os01g0973000' => 'osa', 'Os03g0273800' => 'osa', 'Os03g0701200' => 'osa', 'Os03g0834050' => 'osa', 'Os07g0634400' => 'osa', 'Peaxi162Scf00092g01414' => 'pax', 'Peaxi162Scf00165g00818' => 'pax', 'Peaxi162Scf00309g00516' => 'pax', 'Peaxi162Scf00774g00218' => 'pax', 'PGR004G1824' => 'pgr', 'PGR004G2606' => 'pgr', 'PGR031G2716' => 'pgr', 'PGR102G2460' => 'pgr', 'PGR142G2599' => 'pgr', 'PGSC0003DMG400000843' => 'stu', 'PGSC0003DMG400008829' => 'stu', 'PGSC0003DMG400030418' => 'stu', 'PGSC0003DMG400031834' => 'stu', 'PGSC0003DMG401028300' => 'stu', 'PGSC0003DMG402028300' => 'stu', 'Phvul.001G219300' => 'pvu', 'Phvul.007G056000' => 'pvu', 'Phvul.007G208000' => 'pvu', 'Phvul.008G119500' => 'pvu', 'Phvul.010G011200' => 'pvu', 'Phvul.010G014800' => 'pvu', 'Phvul.011G062900' => 'pvu', 'Phvul.L007043' => 'pvu', 'Potri.001G242300' => 'ptr', 'Potri.002G185300' => 'ptr', 'Potri.006G086900' => 'ptr', 'Potri.008G151700' => 'ptr', 'Potri.009G033500' => 'ptr', 'Potri.010G089300' => 'ptr', 'Potri.014G110800' => 'ptr', 'Pp3c27_8130' => 'ppa', 'Pp3c6_27410' => 'ppa', 'PRCOL_00001659' => 'pco', 'PRCOL_00001927' => 'pco', 'PRCOL_00003649' => 'pco', 'Prupe.1G011600' => 'ppe', 'Prupe.3G000800' => 'ppe', 'Prupe.3G001100' => 'ppe', 'Prupe.6G072700' => 'ppe', 'Prupe.6G072800' => 'ppe', 'Prupe.6G257300' => 'ppe', 'Prupe.8G033000' => 'ppe', 'Psat0s2633g0080' => 'psa', 'Psat0s3396g0080' => 'psa', 'Psat0s3396g0200' => 'psa', 'Psat3g139080' => 'psa', 'Psat5g285080' => 'psa', 'Psat6g157760' => 'psa', 'Psat6g208440' => 'psa', 'Psat7g215320' => 'psa', 'Psat7g215400' => 'psa', 'Psat7g235600' => 'psa', 'Psat7g235760' => 'psa', 'PSO063G4603' => 'pso', 'PSO210G0182' => 'pso', 'PSO210G0196' => 'pso', 'PSO339G0394' => 'pso', 'PSO339G4127' => 'pso', 'PSO513G0064' => 'pso', 'PSO761G0079' => 'pso', 'QL01p031003' => 'qlo', 'QL01p031078' => 'qlo', 'QL06p003004' => 'qlo', 'QL07p048731' => 'qlo', 'QL09p037427' => 'qlo', 'RcHm_v2.0_Chr3g0466361' => 'rch', 'RcHm_v2.0_Chr3g0485571' => 'rch', 'RcHm_v2.0_Chr4g0416551' => 'rch', 'RcHm_v2.0_Chr5g0065831' => 'rch', 'Rhsim01G0230500' => 'rsi', 'Rhsim05G0194000' => 'rsi', 'Rhsim08G0250400' => 'rsi', 'Sabra02G0131000' => 'sbr', 'Sabra06G0066300' => 'sbr', 'Sabra08G0115500' => 'sbr', 'Sabra09G0023900' => 'sbr', 'Sabra10G0054000' => 'sbr', 'Sabra14G0081500' => 'sbr', 'Sabra16G0147100' => 'sbr', 'SalBow2G2957' => 'sbo', 'SalBow4G3320' => 'sbo', 'SalBow8G1894' => 'sbo', 'Sc07g0007950' => 'sci', 'Sc12g0001360' => 'sci', 'Sc13g0004330' => 'sci', 'Sc20g0005010' => 'sci', 'Sed0000361' => 'sed', 'Sed0001706' => 'sed', 'Sed0002422' => 'sed', 'Sed0004029' => 'sed', 'Sed0004602' => 'sed', 'Sed0004943' => 'sed', 'Sed0008646' => 'sed', 'Sed0023313' => 'sed', 'Sed0024843' => 'sed', 'SEGI_00081' => 'sgi', 'SEGI_00947' => 'sgi', 'SEGI_04046' => 'sgi', 'SEGI_06880' => 'sgi', 'SEGI_09736' => 'sgi', 'SEGI_12741' => 'sgi', 'SEGI_14530' => 'sgi', 'SEGI_20705' => 'sgi', 'SEGI_26088' => 'sgi', 'SEGI_28323' => 'sgi', 'SEGI_33343' => 'sgi', 'SGA_v2.0_scaffold126G33775' => 'sas', 'SGA_v2.0_scaffold2G01337' => 'sas', 'SGA_v2.0_scaffold38G15006' => 'sas', 'SGA_v2.0_scaffold39G15264' => 'sas', 'SGA_v2.0_scaffold453G51880' => 'sas', 'SHI12696' => 'shi', 'SMO367G1096' => 'smo', 'Solyc01g068630.3' => 'sly', 'Solyc05g011880.3' => 'sly', 'Solyc06g076300.3' => 'sly', 'Solyc09g010940.4' => 'sly', 'Solyc09g075890.3' => 'sly', 'Sopen01g030560' => 'spe', 'Sopen05g006630' => 'spe', 'Sopen06g032720' => 'spe', 'Sopen09g005660' => 'spe', 'Sopen09g030690' => 'spe', 'Sp4g14540' => 'spa', 'Sp4g20030' => 'spa', 'Sp5g01320' => 'spa', 'Sp6g21170' => 'spa', 'Sp6g21180' => 'spa', 'Sp6g21190' => 'spa', 'Sp6g40220' => 'spa', 'TAR362G0122' => 'tar', 'TAR362G1338' => 'tar', 'TAR369G0590' => 'tar', 'TAR371G0824' => 'tar', 'TAR622G1429' => 'tar', 'TAR623G0734' => 'tar', 'TAR625G0441' => 'tar', 'TAR629G0976' => 'tar', 'TAR633G1195' => 'tar', 'TAR636G2660' => 'tar', 'THA.LOC104799440' => 'tha', 'THA.LOC104800966' => 'tha', 'THA.LOC104806559' => 'tha', 'THA.LOC104810765' => 'tha', 'THA.LOC104816266' => 'tha', 'THA.LOC104817419' => 'tha', 'THA.LOC104827021' => 'tha', 'Thecc.01G327400' => 'tca', 'Thecc.04G229200' => 'tca', 'Thecc.05G037400' => 'tca', 'Thecc.09G318600' => 'tca', 'Thecc.09G318700' => 'tca', 'Thhalv10006238m.g' => 'esa', 'Thhalv10014321m.g' => 'esa', 'Thhalv10014335m.g' => 'esa', 'Thhalv10015826m.g' => 'esa', 'Thhalv10017107m.g' => 'esa', 'Thhalv10017180m.g' => 'esa', 'Thhalv10029339m.g' => 'esa', 'TPR.G1699' => 'tpr', 'TPR.G23609' => 'tpr', 'TPR.G3081' => 'tpr', 'TPR.G40397' => 'tpr', 'TPR.G5522' => 'tpr', 'TPR.G5618' => 'tpr', 'TPR.G5626' => 'tpr', 'TWI09G1632' => 'twi', 'TWI23G1230' => 'twi', 'TWI53G1064' => 'twi', 'TWI59G0751' => 'twi', 'TWI74G0947' => 'twi', 'TWI77G0337' => 'twi', 'TWI79G1254' => 'twi', 'unitig_0.g2341' => 'ugi', 'unitig_26.g10006' => 'ugi', 'unitig_26.g10008' => 'ugi', 'unitig_26.g9192' => 'ugi', 'vmacro14547' => 'vma', 'vmacro15333' => 'vma', 'vmacro18743' => 'vma', 'vmacro20166' => 'vma', 'VMungo0331G0523' => 'vmu', 'VMungo0331G1202' => 'vmu', 'VMungo0720G1228' => 'vmu', 'VMungo0720G1514' => 'vmu', 'VMungo1080G0169' => 'vmu', 'VMungo1127G1475' => 'vmu', 'VMungo1383G1208' => 'vmu', 'VMungo1383G1698' => 'vmu', 'Zm00001eb012270' => 'zma', 'Zm00001eb054100' => 'zma', 'Zm00001eb063350' => 'zma', 'Zm00001eb328560' => 'zma', 'Zm00001eb342820' => 'zma', 'Zm00001eb362210' => 'zma', 'Zm00001eb397730' => 'zma', 'Zm00001eb399750' => 'zma' ), 'gf_id' => 'HOM05D000959', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000959' ), 'data_identifier' => 'HOM05D000959', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000959', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '622', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p07100' => 'bna', 'A03p11720' => 'bna', 'A05p08300' => 'bna', 'A05p13380' => 'bna', 'A09p54130' => 'bna', 'A10p16690' => 'bna', 'A10p16700' => 'bna', 'A10p33390' => 'bna', 'Aa31LG10G16020' => 'aar', 'Aa31LG1G11810' => 'aar', 'Aa31LG1G11830' => 'aar', 'Aa31LG1G22510' => 'aar', 'Aa31LG5G4890' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5793' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2310' => 'aag', 'Actinidia08499' => 'ach', 'Actinidia11262' => 'ach', 'Actinidia23926' => 'ach', 'Actinidia34420' => 'ach', 'Actinidia36970' => 'ach', 'Ah.02g111220' => 'amhyb', 'Ah.15g097750' => 'amhyb', 'AL4G27500' => 'aly', 'AL6G11470' => 'aly', 'AL8G35950' => 'aly', 'AL8G35960' => 'aly', 'AL8G35970' => 'aly', 'Aqoxy1G00912' => 'aox', 'Aqoxy2G02253' => 'aox', 'Aqoxy2G02411' => 'aox', 'Aqoxy5G00485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BZ66YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K8ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM4FUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6BF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HFV7XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25JBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0YNNV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MAKK6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P70IT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP2Z6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V61LZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YWP64R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3S9AI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7PGHH' => 'arhy', 'AT2G32150' => 'ath', 'AT3G62040' => 'ath', 'AT5G02230' => 'ath', 'AT5G59480' => 'ath', 'AT5G59490' => 'ath', 'ATR0332G060' => 'atr', 'ATR0559G190' => 'atr', 'ATR0693G294' => 'atr', 'Atru.chr3.3975' => 'acertr', 'Atru.chr3.3976' => 'acertr', 'Atru.chr3.3977' => 'acertr', 'Atru.chr4.2498' => 'acertr', 'Atru.chr5.838' => 'acertr', 'Atru.chr8.1990' => 'acertr', 'Atru.chr8.1991' => 'acertr', 'Atru.chr8.1992' => 'acertr', 'AUR62001759' => 'cqu', 'AUR62009545' => 'cqu', 'AUR62010474' => 'cqu', 'AUR62025820' => 'cqu', 'AUR62030422' => 'cqu', 'AUR62033605' => 'cqu', 'AUR62038615' => 'cqu', 'AUR62041347' => 'cqu', 'BcaB01g04574' => 'bca', 'BcaB02g09263' => 'bca', 'BcaB02g10453' => 'bca', 'BcaB05g22513' => 'bca', 'BcaB08g36253' => 'bca', 'BcaB08g36254' => 'bca', 'BcaC01g06519' => 'bca', 'BcaC02g11889' => 'bca', 'BcaC03g14010' => 'bca', 'BcaC03g18439' => 'bca', 'BcaC04g19765' => 'bca', 'BcaC09g48432' => 'bca', 'BcaNung07302' => 'bca', 'BolC2t06040H' => 'bol', 'BolC2t07346H' => 'bol', 'BolC3t13817H' => 'bol', 'BolC4t22625H' => 'bol', 'BolC4t23297H' => 'bol', 'BolC8t51278H' => 'bol', 'BolC9t58050H' => 'bol', 'BolC9t58051H' => 'bol', 'BolC9t60163H' => 'bol', 'BraA02t04712Z' => 'bra', 'BraA02t05791Z' => 'bra', 'BraA03t10483Z' => 'bra', 'BraA05t19795Z' => 'bra', 'BraA05t20276Z' => 'bra', 'BraA09t40827Z' => 'bra', 'BraA10t43750Z' => 'bra', 'BraA10t43751Z' => 'bra', 'BraA10t45370Z' => 'bra', 'C02p00400' => 'bna', 'C02p12460' => 'bna', 'C03p13680' => 'bna', 'C04p10270' => 'bna', 'C04p17500' => 'bna', 'C08p37010' => 'bna', 'C09p51880' => 'bna', 'C09p51890' => 'bna', 'C09p74300' => 'bna', 'CAN.G179.26' => 'can', 'CAN.G3384.1' => 'can', 'CAN.G394.68' => 'can', 'CAN.G907.13' => 'can', 'CANSAT11G0012' => 'cansat', 'CANSAT25G1586' => 'cansat', 'CANSAT35G0735' => 'cansat', 'CANSAT54G0556' => 'cansat', 'CANSAT64G0356' => 'cansat', 'CANSAT78G2042' => 'cansat', 'CARHR125920' => 'chi', 'CARHR131910' => 'chi', 'CARHR172390' => 'chi', 'CARHR211140' => 'chi', 'CARHR285850' => 'chi', 'CARHR285860' => 'chi', 'Carub.0004s1347' => 'cru', 'Carub.0004s1960' => 'cru', 'Carub.0005s2880' => 'cru', 'Carub.0006s0107' => 'cru', 'Carub.0008s2015' => 'cru', 'Carub.0008s2016' => 'cru', 'Carub.0008s2017' => 'cru', 'Ca_01315_v3' => 'car', 'Ca_05063_v3' => 'car', 'Ca_10231_v3' => 'car', 'Ca_10913_v3' => 'car', 'Ca_19156_v3' => 'car', 'Ca_23644_v3' => 'car', 'Ca_26735_v3' => 'car', 'Cc01_g13130' => 'ccan', 'Cc02_g21690' => 'ccan', 'Cc03_g03600' => 'ccan', 'Cc06_g02510' => 'ccan', 'CDE02G1265' => 'cde', 'CDE05G0415' => 'cde', 'CDE08G1082' => 'cde', 'Cfa005780' => 'cfa', 'Cfa011522' => 'cfa', 'Cfa011523' => 'cfa', 'Cfa015627' => 'cfa', 'Cfa017359' => 'cfa', 'Ciclev10005687m.g' => 'ccl', 'Ciclev10012173m.g' => 'ccl', 'Ciclev10021621m.g' => 'ccl', 'Ciclev10028968m.g' => 'ccl', 'Ciclev10029907m.g' => 'ccl', 'CiPaw.01G164800' => 'cil', 'CiPaw.07G083700' => 'cil', 'CiPaw.07G127000' => 'cil', 'CiPaw.07G136900' => 'cil', 'CiPaw.08G081700' => 'cil', 'CiPaw.09G194600' => 'cil', 'CiPaw.10G146500' => 'cil', 'CiPaw.13G091500' => 'cil', 'CiPaw.13G091600' => 'cil', 'ClCG00G003390' => 'cla', 'ClCG01G007220' => 'cla', 'ClCG03G001370' => 'cla', 'ClCG04G008100' => 'cla', 'ClCG06G006110' => 'cla', 'ClCG06G006130' => 'cla', 'ClCG10G021210' => 'cla', 'COL.COLO4_07648' => 'col', 'COL.COLO4_07650' => 'col', 'COL.COLO4_07651' => 'col', 'COL.COLO4_14780' => 'col', 'COL.COLO4_18546' => 'col', 'COL.COLO4_18547' => 'col', 'COL.COLO4_23103' => 'col', 'COL.COLO4_30419' => 'col', 'COL.COLO4_34232' => 'col', 'Cpa.g.sc169.20' => 'cpa', 'Cpa.g.sc57.45' => 'cpa', 'Cpa.g.sc58.124' => 'cpa', 'Cpa.g.sc58.125' => 'cpa', 'Cpa.g.sc81.118' => 'cpa', 'Cpa.g.sc81.119' => 'cpa', 'Cre12.g524700' => 'cre', 'CsaV3_1G034430' => 'csa', 'CsaV3_1G034440' => 'csa', 'CsaV3_1G034450' => 'csa', 'CsaV3_3G034830' => 'csa', 'CsaV3_4G025090' => 'csa', 'CsaV3_5G018660' => 'csa', 'CsaV3_6G038160' => 'csa', 'CSS0003447' => 'camsi', 'CSS0017840' => 'camsi', 'CSS0019260' => 'camsi', 'CSS0040375' => 'camsi', 'CSS0042533' => 'camsi', 'DCAR_005960' => 'dca', 'DCAR_012104' => 'dca', 'DCAR_012105' => 'dca', 'DCAR_012293' => 'dca', 'DCAR_015632' => 'dca', 'DCAR_024602' => 'dca', 'DCAR_028752' => 'dca', 'Dinv06261' => 'din', 'Dinv13982' => 'din', 'Dinv17029' => 'din', 'Dinv18463' => 'din', 'Dinv33181' => 'din', 'Dinv35585' => 'din', 'Dinv37161' => 'din', 'Dinv42977' => 'din', 'Dinv43122' => 'din', 'Dinv44517' => 'din', 'Duzib093G0256' => 'dzi', 'Duzib106G1254' => 'dzi', 'Duzib128G1789' => 'dzi', 'Duzib133G0633' => 'dzi', 'Duzib138G0510' => 'dzi', 'Duzib150G1084' => 'dzi', 'Duzib168G0488' => 'dzi', 'Duzib168G1523' => 'dzi', 'Duzib170G0133' => 'dzi', 'ECA234G1433' => 'eca', 'ECA236G1432' => 'eca', 'ECA236G2256' => 'eca', 'ECA236G2365' => 'eca', 'ECA236G4830' => 'eca', 'ECA248G1505' => 'eca', 'EL10Ac3g06431' => 'bvu', 'EL10Ac5g12577' => 'bvu', 'EL10Ac6g13533' => 'bvu', 'EL10Ac7g16045' => 'bvu', 'Eucgr.A01281' => 'egr', 'Eucgr.B02326' => 'egr', 'Eucgr.H03532' => 'egr', 'Eucgr.K00553' => 'egr', 'Eucgr.K03116' => 'egr', 'FAN02G3963' => 'fan', 'FAN05G0438' => 'fan', 'FAN09G2434' => 'fan', 'FAN12G3984' => 'fan', 'FAN14G0798' => 'fan', 'FAN17G0652' => 'fan', 'FAN19G1988' => 'fan', 'FAN22G0632' => 'fan', 'FAN23G0387' => 'fan', 'FAN26G1323' => 'fan', 'FAN28G0666' => 'fan', 'FvH4_1g26080' => 'fve', 'FvH4_3g36780' => 'fve', 'FvH4_4g15270' => 'fve', 'FvH4_6g13490' => 'fve', 'Glyma.01G098700' => 'gma', 'Glyma.03G065900' => 'gma', 'Glyma.03G073754' => 'gma', 'Glyma.03G073758' => 'gma', 'Glyma.03G083200' => 'gma', 'Glyma.03G225500' => 'gma', 'Glyma.05G037766' => 'gma', 'Glyma.07G133500' => 'gma', 'Glyma.10G139400' => 'gma', 'Glyma.10G248900' => 'gma', 'Glyma.11G137800' => 'gma', 'Glyma.12G061300' => 'gma', 'Glyma.13G337900' => 'gma', 'Glyma.15G036600' => 'gma', 'Glyma.18G182800' => 'gma', 'Glyma.19G222500' => 'gma', 'Glyma.20G144800' => 'gma', 'Gohir.A01G222000' => 'ghi', 'Gohir.A03G044000' => 'ghi', 'Gohir.A03G044100' => 'ghi', 'Gohir.A04G083100' => 'ghi', 'Gohir.A07G127200' => 'ghi', 'Gohir.A07G132400' => 'ghi', 'Gohir.A08G000700' => 'ghi', 'Gohir.A11G327300' => 'ghi', 'Gohir.D01G211500' => 'ghi', 'Gohir.D03G123400' => 'ghi', 'Gohir.D03G123500' => 'ghi', 'Gohir.D04G121800' => 'ghi', 'Gohir.D07G131500' => 'ghi', 'Gohir.D07G136600' => 'ghi', 'Gohir.D08G011600' => 'ghi', 'Gohir.D11G346200' => 'ghi', 'Gorai.001G142800' => 'gra', 'Gorai.001G148700' => 'gra', 'Gorai.002G257300' => 'gra', 'Gorai.003G130000' => 'gra', 'Gorai.003G130100' => 'gra', 'Gorai.004G005300' => 'gra', 'Gorai.007G376500' => 'gra', 'Gorai.012G104700' => 'gra', 'GSVIVG01017946001' => 'vvi', 'GSVIVG01024928001' => 'vvi', 'GSVIVG01028227001' => 'vvi', 'GSVIVG01034151001' => 'vvi', 'HanXRQChr05g0135031' => 'han', 'HanXRQChr05g0135041' => 'han', 'HanXRQChr05g0140021' => 'han', 'HanXRQChr06g0178981' => 'han', 'HanXRQChr07g0188251' => 'han', 'HanXRQChr08g0235311' => 'han', 'HanXRQChr09g0271011' => 'han', 'HanXRQChr10g0293321' => 'han', 'HanXRQChr13g0388171' => 'han', 'Haze_00916' => 'cav', 'Haze_05063' => 'cav', 'Haze_20814' => 'cav', 'Haze_24128' => 'cav', 'Hma1.2p1_0745F.1_g212010' => 'hma', 'Hma1.2p1_0757F.1_g213260' => 'hma', 'Hma1.2p1_0936F.1_g238840' => 'hma', 'Hma1.2p1_1735F.1_g299890' => 'hma', 'Hma1.2p1_1861F.1_g305685' => 'hma', 'HPP92_003397' => 'vpl', 'HPP92_012597' => 'vpl', 'HPP92_015520' => 'vpl', 'HPP92_015539' => 'vpl', 'HPP92_020373' => 'vpl', 'Hund04938' => 'sun', 'Hund10677' => 'sun', 'Hund11033' => 'sun', 'Hund12155' => 'sun', 'Lalb_Chr01g0022551' => 'lal', 'Lalb_Chr03g0042341' => 'lal', 'Lalb_Chr07g0192931' => 'lal', 'Lalb_Chr12g0209551' => 'lal', 'Lalb_Chr19g0125251' => 'lal', 'Lalb_Chr19g0137891' => 'lal', 'Lalb_Chr21g0304641' => 'lal', 'Lalb_Chr21g0309881' => 'lal', 'Lj1A5T12' => 'lonja', 'Lj1C148G10' => 'lonja', 'Lj2A93T83' => 'lonja', 'Lj3A738G68' => 'lonja', 'Lj3C966T1' => 'lonja', 'Lj3g0018958' => 'lja', 'Lj3g0021831' => 'lja', 'Lj3g0025443' => 'lja', 'Lj4g0026809' => 'lja', 'Lj5g0012558' => 'lja', 'Lj5g0021586' => 'lja', 'Lsat_1_v5_gn_5_156840' => 'lsa', 'Lsat_1_v5_gn_8_73460' => 'lsa', 'Lsat_1_v5_gn_8_73481' => 'lsa', 'Lsat_1_v5_gn_9_31601' => 'lsa', 'Lsat_1_v5_gn_9_77320' => 'lsa', 'Manes.01G171300' => 'mes', 'Manes.01G171400' => 'mes', 'Manes.01G236100' => 'mes', 'Manes.02G130500' => 'mes', 'Manes.02G130600' => 'mes', 'Manes.03G180200' => 'mes', 'Manes.05G007000' => 'mes', 'Manes.08G084400' => 'mes', 'Manes.09G092600' => 'mes', 'Manes.15G027900' => 'mes', 'MBI04_g40948_MAGBIO' => 'mbi', 'MBI14_g12123_MAGBIO' => 'mbi', 'MBI18_g28915_MAGBIO' => 'mbi', 'MCO09G053' => 'mco', 'MCO11G782' => 'mco', 'MCO15G215' => 'mco', 'MD03G1088500' => 'mdo', 'MD03G1088600' => 'mdo', 'MD04G1130800' => 'mdo', 'MD09G1291700' => 'mdo', 'MD11G1097500' => 'mdo', 'MD11G1097600' => 'mdo', 'MD12G1143900' => 'mdo', 'MD13G1191400' => 'mdo', 'MD16G1191500' => 'mdo', 'Medtr1g085570' => 'mtr', 'Medtr1g104610' => 'mtr', 'Medtr2g097520' => 'mtr', 'Medtr4g021800' => 'mtr', 'Medtr4g021825' => 'mtr', 'Medtr4g064270' => 'mtr', 'Medtr4g064380' => 'mtr', 'Medtr7g062150' => 'mtr', 'MELO3C003138.2' => 'cme', 'MELO3C005187.2' => 'cme', 'MELO3C009252.2' => 'cme', 'MELO3C014481.2' => 'cme', 'MELO3C020616.2' => 'cme', 'MELO3C020617.2' => 'cme', 'MELO3C020618.2' => 'cme', 'Migut.G00328' => 'egut', 'Migut.J00320' => 'egut', 'Migut.L01000' => 'egut', 'Migut.L01953' => 'egut', 'MSTRG.10253' => 'ama', 'MSTRG.19077' => 'ama', 'MSTRG.26780' => 'ama', 'MSTRG.4023' => 'ama', 'MSTRG.5655' => 'ama', 'MSTRG.9992' => 'ama', 'Nitab4.5_0000043g0310' => 'nta', 'Nitab4.5_0000463g0080' => 'nta', 'Nitab4.5_0000705g0170' => 'nta', 'Nitab4.5_0001326g0060' => 'nta', 'Nitab4.5_0001628g0030' => 'nta', 'Nitab4.5_0002103g0110' => 'nta', 'Nitab4.5_0002946g0030' => 'nta', 'Nitab4.5_0004639g0030' => 'nta', 'Nn2g11149' => 'nnu', 'Nn2g13389' => 'nnu', 'Nn4g25326' => 'nnu', 'Nn4g26290' => 'nnu', 'Nn5g29865' => 'nnu', 'Oeu004163.1' => 'oeu', 'Oeu006901.1' => 'oeu', 'Oeu010096.1' => 'oeu', 'Oeu024340.1' => 'oeu', 'Oeu048369.1' => 'oeu', 'Os01g0973000' => 'osa', 'Os03g0273800' => 'osa', 'Os03g0701200' => 'osa', 'Os03g0834050' => 'osa', 'Os07g0634400' => 'osa', 'Peaxi162Scf00092g01414' => 'pax', 'Peaxi162Scf00165g00818' => 'pax', 'Peaxi162Scf00309g00516' => 'pax', 'Peaxi162Scf00774g00218' => 'pax', 'PGR004G1824' => 'pgr', 'PGR004G2606' => 'pgr', 'PGR031G2716' => 'pgr', 'PGR102G2460' => 'pgr', 'PGR142G2599' => 'pgr', 'PGSC0003DMG400000843' => 'stu', 'PGSC0003DMG400008829' => 'stu', 'PGSC0003DMG400030418' => 'stu', 'PGSC0003DMG400031834' => 'stu', 'PGSC0003DMG401028300' => 'stu', 'PGSC0003DMG402028300' => 'stu', 'Phvul.001G219300' => 'pvu', 'Phvul.007G056000' => 'pvu', 'Phvul.007G208000' => 'pvu', 'Phvul.008G119500' => 'pvu', 'Phvul.010G011200' => 'pvu', 'Phvul.010G014800' => 'pvu', 'Phvul.011G062900' => 'pvu', 'Phvul.L007043' => 'pvu', 'Potri.001G242300' => 'ptr', 'Potri.002G185300' => 'ptr', 'Potri.006G086900' => 'ptr', 'Potri.008G151700' => 'ptr', 'Potri.009G033500' => 'ptr', 'Potri.010G089300' => 'ptr', 'Potri.014G110800' => 'ptr', 'Pp3c27_8130' => 'ppa', 'Pp3c6_27410' => 'ppa', 'PRCOL_00001659' => 'pco', 'PRCOL_00001927' => 'pco', 'PRCOL_00003649' => 'pco', 'Prupe.1G011600' => 'ppe', 'Prupe.3G000800' => 'ppe', 'Prupe.3G001100' => 'ppe', 'Prupe.6G072700' => 'ppe', 'Prupe.6G072800' => 'ppe', 'Prupe.6G257300' => 'ppe', 'Prupe.8G033000' => 'ppe', 'Psat0s2633g0080' => 'psa', 'Psat0s3396g0080' => 'psa', 'Psat0s3396g0200' => 'psa', 'Psat3g139080' => 'psa', 'Psat5g285080' => 'psa', 'Psat6g157760' => 'psa', 'Psat6g208440' => 'psa', 'Psat7g215320' => 'psa', 'Psat7g215400' => 'psa', 'Psat7g235600' => 'psa', 'Psat7g235760' => 'psa', 'PSO063G4603' => 'pso', 'PSO210G0182' => 'pso', 'PSO210G0196' => 'pso', 'PSO339G0394' => 'pso', 'PSO339G4127' => 'pso', 'PSO513G0064' => 'pso', 'PSO761G0079' => 'pso', 'QL01p031003' => 'qlo', 'QL01p031078' => 'qlo', 'QL06p003004' => 'qlo', 'QL07p048731' => 'qlo', 'QL09p037427' => 'qlo', 'RcHm_v2.0_Chr3g0466361' => 'rch', 'RcHm_v2.0_Chr3g0485571' => 'rch', 'RcHm_v2.0_Chr4g0416551' => 'rch', 'RcHm_v2.0_Chr5g0065831' => 'rch', 'Rhsim01G0230500' => 'rsi', 'Rhsim05G0194000' => 'rsi', 'Rhsim08G0250400' => 'rsi', 'Sabra02G0131000' => 'sbr', 'Sabra06G0066300' => 'sbr', 'Sabra08G0115500' => 'sbr', 'Sabra09G0023900' => 'sbr', 'Sabra10G0054000' => 'sbr', 'Sabra14G0081500' => 'sbr', 'Sabra16G0147100' => 'sbr', 'SalBow2G2957' => 'sbo', 'SalBow4G3320' => 'sbo', 'SalBow8G1894' => 'sbo', 'Sc07g0007950' => 'sci', 'Sc12g0001360' => 'sci', 'Sc13g0004330' => 'sci', 'Sc20g0005010' => 'sci', 'Sed0000361' => 'sed', 'Sed0001706' => 'sed', 'Sed0002422' => 'sed', 'Sed0004029' => 'sed', 'Sed0004602' => 'sed', 'Sed0004943' => 'sed', 'Sed0008646' => 'sed', 'Sed0023313' => 'sed', 'Sed0024843' => 'sed', 'SEGI_00081' => 'sgi', 'SEGI_00947' => 'sgi', 'SEGI_04046' => 'sgi', 'SEGI_06880' => 'sgi', 'SEGI_09736' => 'sgi', 'SEGI_12741' => 'sgi', 'SEGI_14530' => 'sgi', 'SEGI_20705' => 'sgi', 'SEGI_26088' => 'sgi', 'SEGI_28323' => 'sgi', 'SEGI_33343' => 'sgi', 'SGA_v2.0_scaffold126G33775' => 'sas', 'SGA_v2.0_scaffold2G01337' => 'sas', 'SGA_v2.0_scaffold38G15006' => 'sas', 'SGA_v2.0_scaffold39G15264' => 'sas', 'SGA_v2.0_scaffold453G51880' => 'sas', 'SHI12696' => 'shi', 'SMO367G1096' => 'smo', 'Solyc01g068630.3' => 'sly', 'Solyc05g011880.3' => 'sly', 'Solyc06g076300.3' => 'sly', 'Solyc09g010940.4' => 'sly', 'Solyc09g075890.3' => 'sly', 'Sopen01g030560' => 'spe', 'Sopen05g006630' => 'spe', 'Sopen06g032720' => 'spe', 'Sopen09g005660' => 'spe', 'Sopen09g030690' => 'spe', 'Sp4g14540' => 'spa', 'Sp4g20030' => 'spa', 'Sp5g01320' => 'spa', 'Sp6g21170' => 'spa', 'Sp6g21180' => 'spa', 'Sp6g21190' => 'spa', 'Sp6g40220' => 'spa', 'TAR362G0122' => 'tar', 'TAR362G1338' => 'tar', 'TAR369G0590' => 'tar', 'TAR371G0824' => 'tar', 'TAR622G1429' => 'tar', 'TAR623G0734' => 'tar', 'TAR625G0441' => 'tar', 'TAR629G0976' => 'tar', 'TAR633G1195' => 'tar', 'TAR636G2660' => 'tar', 'THA.LOC104799440' => 'tha', 'THA.LOC104800966' => 'tha', 'THA.LOC104806559' => 'tha', 'THA.LOC104810765' => 'tha', 'THA.LOC104816266' => 'tha', 'THA.LOC104817419' => 'tha', 'THA.LOC104827021' => 'tha', 'Thecc.01G327400' => 'tca', 'Thecc.04G229200' => 'tca', 'Thecc.05G037400' => 'tca', 'Thecc.09G318600' => 'tca', 'Thecc.09G318700' => 'tca', 'Thhalv10006238m.g' => 'esa', 'Thhalv10014321m.g' => 'esa', 'Thhalv10014335m.g' => 'esa', 'Thhalv10015826m.g' => 'esa', 'Thhalv10017107m.g' => 'esa', 'Thhalv10017180m.g' => 'esa', 'Thhalv10029339m.g' => 'esa', 'TPR.G1699' => 'tpr', 'TPR.G23609' => 'tpr', 'TPR.G3081' => 'tpr', 'TPR.G40397' => 'tpr', 'TPR.G5522' => 'tpr', 'TPR.G5618' => 'tpr', 'TPR.G5626' => 'tpr', 'TWI09G1632' => 'twi', 'TWI23G1230' => 'twi', 'TWI53G1064' => 'twi', 'TWI59G0751' => 'twi', 'TWI74G0947' => 'twi', 'TWI77G0337' => 'twi', 'TWI79G1254' => 'twi', 'unitig_0.g2341' => 'ugi', 'unitig_26.g10006' => 'ugi', 'unitig_26.g10008' => 'ugi', 'unitig_26.g9192' => 'ugi', 'vmacro14547' => 'vma', 'vmacro15333' => 'vma', 'vmacro18743' => 'vma', 'vmacro20166' => 'vma', 'VMungo0331G0523' => 'vmu', 'VMungo0331G1202' => 'vmu', 'VMungo0720G1228' => 'vmu', 'VMungo0720G1514' => 'vmu', 'VMungo1080G0169' => 'vmu', 'VMungo1127G1475' => 'vmu', 'VMungo1383G1208' => 'vmu', 'VMungo1383G1698' => 'vmu', 'Zm00001eb012270' => 'zma', 'Zm00001eb054100' => 'zma', 'Zm00001eb063350' => 'zma', 'Zm00001eb328560' => 'zma', 'Zm00001eb342820' => 'zma', 'Zm00001eb362210' => 'zma', 'Zm00001eb397730' => 'zma', 'Zm00001eb399750' => 'zma' ) $gf_id = 'HOM05D000959' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000959' ) $data_identifier = 'HOM05D000959' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 5, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 5, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 10, 'mbi' => (int) 3, 'mco' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 2, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 3, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 11, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399750' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000959', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '622', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p07100' => 'bna', 'A03p11720' => 'bna', 'A05p08300' => 'bna', 'A05p13380' => 'bna', 'A09p54130' => 'bna', 'A10p16690' => 'bna', 'A10p16700' => 'bna', 'A10p33390' => 'bna', 'Aa31LG10G16020' => 'aar', 'Aa31LG1G11810' => 'aar', 'Aa31LG1G11830' => 'aar', 'Aa31LG1G22510' => 'aar', 'Aa31LG5G4890' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5793' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2310' => 'aag', 'Actinidia08499' => 'ach', 'Actinidia11262' => 'ach', 'Actinidia23926' => 'ach', 'Actinidia34420' => 'ach', 'Actinidia36970' => 'ach', 'Ah.02g111220' => 'amhyb', 'Ah.15g097750' => 'amhyb', 'AL4G27500' => 'aly', 'AL6G11470' => 'aly', 'AL8G35950' => 'aly', 'AL8G35960' => 'aly', 'AL8G35970' => 'aly', 'Aqoxy1G00912' => 'aox', 'Aqoxy2G02253' => 'aox', 'Aqoxy2G02411' => 'aox', 'Aqoxy5G00485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BZ66YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K8ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM4FUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6BF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HFV7XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25JBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0YNNV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MAKK6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P70IT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP2Z6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V61LZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YWP64R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3S9AI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7PGHH' => 'arhy', 'AT2G32150' => 'ath', 'AT3G62040' => 'ath', 'AT5G02230' => 'ath', 'AT5G59480' => 'ath', 'AT5G59490' => 'ath', 'ATR0332G060' => 'atr', 'ATR0559G190' => 'atr', 'ATR0693G294' => 'atr', 'Atru.chr3.3975' => 'acertr', 'Atru.chr3.3976' => 'acertr', 'Atru.chr3.3977' => 'acertr', 'Atru.chr4.2498' => 'acertr', 'Atru.chr5.838' => 'acertr', 'Atru.chr8.1990' => 'acertr', 'Atru.chr8.1991' => 'acertr', 'Atru.chr8.1992' => 'acertr', 'AUR62001759' => 'cqu', 'AUR62009545' => 'cqu', 'AUR62010474' => 'cqu', 'AUR62025820' => 'cqu', 'AUR62030422' => 'cqu', 'AUR62033605' => 'cqu', 'AUR62038615' => 'cqu', 'AUR62041347' => 'cqu', 'BcaB01g04574' => 'bca', 'BcaB02g09263' => 'bca', 'BcaB02g10453' => 'bca', 'BcaB05g22513' => 'bca', 'BcaB08g36253' => 'bca', 'BcaB08g36254' => 'bca', 'BcaC01g06519' => 'bca', 'BcaC02g11889' => 'bca', 'BcaC03g14010' => 'bca', 'BcaC03g18439' => 'bca', 'BcaC04g19765' => 'bca', 'BcaC09g48432' => 'bca', 'BcaNung07302' => 'bca', 'BolC2t06040H' => 'bol', 'BolC2t07346H' => 'bol', 'BolC3t13817H' => 'bol', 'BolC4t22625H' => 'bol', 'BolC4t23297H' => 'bol', 'BolC8t51278H' => 'bol', 'BolC9t58050H' => 'bol', 'BolC9t58051H' => 'bol', 'BolC9t60163H' => 'bol', 'BraA02t04712Z' => 'bra', 'BraA02t05791Z' => 'bra', 'BraA03t10483Z' => 'bra', 'BraA05t19795Z' => 'bra', 'BraA05t20276Z' => 'bra', 'BraA09t40827Z' => 'bra', 'BraA10t43750Z' => 'bra', 'BraA10t43751Z' => 'bra', 'BraA10t45370Z' => 'bra', 'C02p00400' => 'bna', 'C02p12460' => 'bna', 'C03p13680' => 'bna', 'C04p10270' => 'bna', 'C04p17500' => 'bna', 'C08p37010' => 'bna', 'C09p51880' => 'bna', 'C09p51890' => 'bna', 'C09p74300' => 'bna', 'CAN.G179.26' => 'can', 'CAN.G3384.1' => 'can', 'CAN.G394.68' => 'can', 'CAN.G907.13' => 'can', 'CANSAT11G0012' => 'cansat', 'CANSAT25G1586' => 'cansat', 'CANSAT35G0735' => 'cansat', 'CANSAT54G0556' => 'cansat', 'CANSAT64G0356' => 'cansat', 'CANSAT78G2042' => 'cansat', 'CARHR125920' => 'chi', 'CARHR131910' => 'chi', 'CARHR172390' => 'chi', 'CARHR211140' => 'chi', 'CARHR285850' => 'chi', 'CARHR285860' => 'chi', 'Carub.0004s1347' => 'cru', 'Carub.0004s1960' => 'cru', 'Carub.0005s2880' => 'cru', 'Carub.0006s0107' => 'cru', 'Carub.0008s2015' => 'cru', 'Carub.0008s2016' => 'cru', 'Carub.0008s2017' => 'cru', 'Ca_01315_v3' => 'car', 'Ca_05063_v3' => 'car', 'Ca_10231_v3' => 'car', 'Ca_10913_v3' => 'car', 'Ca_19156_v3' => 'car', 'Ca_23644_v3' => 'car', 'Ca_26735_v3' => 'car', 'Cc01_g13130' => 'ccan', 'Cc02_g21690' => 'ccan', 'Cc03_g03600' => 'ccan', 'Cc06_g02510' => 'ccan', 'CDE02G1265' => 'cde', 'CDE05G0415' => 'cde', 'CDE08G1082' => 'cde', 'Cfa005780' => 'cfa', 'Cfa011522' => 'cfa', 'Cfa011523' => 'cfa', 'Cfa015627' => 'cfa', 'Cfa017359' => 'cfa', 'Ciclev10005687m.g' => 'ccl', 'Ciclev10012173m.g' => 'ccl', 'Ciclev10021621m.g' => 'ccl', 'Ciclev10028968m.g' => 'ccl', 'Ciclev10029907m.g' => 'ccl', 'CiPaw.01G164800' => 'cil', 'CiPaw.07G083700' => 'cil', 'CiPaw.07G127000' => 'cil', 'CiPaw.07G136900' => 'cil', 'CiPaw.08G081700' => 'cil', 'CiPaw.09G194600' => 'cil', 'CiPaw.10G146500' => 'cil', 'CiPaw.13G091500' => 'cil', 'CiPaw.13G091600' => 'cil', 'ClCG00G003390' => 'cla', 'ClCG01G007220' => 'cla', 'ClCG03G001370' => 'cla', 'ClCG04G008100' => 'cla', 'ClCG06G006110' => 'cla', 'ClCG06G006130' => 'cla', 'ClCG10G021210' => 'cla', 'COL.COLO4_07648' => 'col', 'COL.COLO4_07650' => 'col', 'COL.COLO4_07651' => 'col', 'COL.COLO4_14780' => 'col', 'COL.COLO4_18546' => 'col', 'COL.COLO4_18547' => 'col', 'COL.COLO4_23103' => 'col', 'COL.COLO4_30419' => 'col', 'COL.COLO4_34232' => 'col', 'Cpa.g.sc169.20' => 'cpa', 'Cpa.g.sc57.45' => 'cpa', 'Cpa.g.sc58.124' => 'cpa', 'Cpa.g.sc58.125' => 'cpa', 'Cpa.g.sc81.118' => 'cpa', 'Cpa.g.sc81.119' => 'cpa', 'Cre12.g524700' => 'cre', 'CsaV3_1G034430' => 'csa', 'CsaV3_1G034440' => 'csa', 'CsaV3_1G034450' => 'csa', 'CsaV3_3G034830' => 'csa', 'CsaV3_4G025090' => 'csa', 'CsaV3_5G018660' => 'csa', 'CsaV3_6G038160' => 'csa', 'CSS0003447' => 'camsi', 'CSS0017840' => 'camsi', 'CSS0019260' => 'camsi', 'CSS0040375' => 'camsi', 'CSS0042533' => 'camsi', 'DCAR_005960' => 'dca', 'DCAR_012104' => 'dca', 'DCAR_012105' => 'dca', 'DCAR_012293' => 'dca', 'DCAR_015632' => 'dca', 'DCAR_024602' => 'dca', 'DCAR_028752' => 'dca', 'Dinv06261' => 'din', 'Dinv13982' => 'din', 'Dinv17029' => 'din', 'Dinv18463' => 'din', 'Dinv33181' => 'din', 'Dinv35585' => 'din', 'Dinv37161' => 'din', 'Dinv42977' => 'din', 'Dinv43122' => 'din', 'Dinv44517' => 'din', 'Duzib093G0256' => 'dzi', 'Duzib106G1254' => 'dzi', 'Duzib128G1789' => 'dzi', 'Duzib133G0633' => 'dzi', 'Duzib138G0510' => 'dzi', 'Duzib150G1084' => 'dzi', 'Duzib168G0488' => 'dzi', 'Duzib168G1523' => 'dzi', 'Duzib170G0133' => 'dzi', 'ECA234G1433' => 'eca', 'ECA236G1432' => 'eca', 'ECA236G2256' => 'eca', 'ECA236G2365' => 'eca', 'ECA236G4830' => 'eca', 'ECA248G1505' => 'eca', 'EL10Ac3g06431' => 'bvu', 'EL10Ac5g12577' => 'bvu', 'EL10Ac6g13533' => 'bvu', 'EL10Ac7g16045' => 'bvu', 'Eucgr.A01281' => 'egr', 'Eucgr.B02326' => 'egr', 'Eucgr.H03532' => 'egr', 'Eucgr.K00553' => 'egr', 'Eucgr.K03116' => 'egr', 'FAN02G3963' => 'fan', 'FAN05G0438' => 'fan', 'FAN09G2434' => 'fan', 'FAN12G3984' => 'fan', 'FAN14G0798' => 'fan', 'FAN17G0652' => 'fan', 'FAN19G1988' => 'fan', 'FAN22G0632' => 'fan', 'FAN23G0387' => 'fan', 'FAN26G1323' => 'fan', 'FAN28G0666' => 'fan', 'FvH4_1g26080' => 'fve', 'FvH4_3g36780' => 'fve', 'FvH4_4g15270' => 'fve', 'FvH4_6g13490' => 'fve', 'Glyma.01G098700' => 'gma', 'Glyma.03G065900' => 'gma', 'Glyma.03G073754' => 'gma', 'Glyma.03G073758' => 'gma', 'Glyma.03G083200' => 'gma', 'Glyma.03G225500' => 'gma', 'Glyma.05G037766' => 'gma', 'Glyma.07G133500' => 'gma', 'Glyma.10G139400' => 'gma', 'Glyma.10G248900' => 'gma', 'Glyma.11G137800' => 'gma', 'Glyma.12G061300' => 'gma', 'Glyma.13G337900' => 'gma', 'Glyma.15G036600' => 'gma', 'Glyma.18G182800' => 'gma', 'Glyma.19G222500' => 'gma', 'Glyma.20G144800' => 'gma', 'Gohir.A01G222000' => 'ghi', 'Gohir.A03G044000' => 'ghi', 'Gohir.A03G044100' => 'ghi', 'Gohir.A04G083100' => 'ghi', 'Gohir.A07G127200' => 'ghi', 'Gohir.A07G132400' => 'ghi', 'Gohir.A08G000700' => 'ghi', 'Gohir.A11G327300' => 'ghi', 'Gohir.D01G211500' => 'ghi', 'Gohir.D03G123400' => 'ghi', 'Gohir.D03G123500' => 'ghi', 'Gohir.D04G121800' => 'ghi', 'Gohir.D07G131500' => 'ghi', 'Gohir.D07G136600' => 'ghi', 'Gohir.D08G011600' => 'ghi', 'Gohir.D11G346200' => 'ghi', 'Gorai.001G142800' => 'gra', 'Gorai.001G148700' => 'gra', 'Gorai.002G257300' => 'gra', 'Gorai.003G130000' => 'gra', 'Gorai.003G130100' => 'gra', 'Gorai.004G005300' => 'gra', 'Gorai.007G376500' => 'gra', 'Gorai.012G104700' => 'gra', 'GSVIVG01017946001' => 'vvi', 'GSVIVG01024928001' => 'vvi', 'GSVIVG01028227001' => 'vvi', 'GSVIVG01034151001' => 'vvi', 'HanXRQChr05g0135031' => 'han', 'HanXRQChr05g0135041' => 'han', 'HanXRQChr05g0140021' => 'han', 'HanXRQChr06g0178981' => 'han', 'HanXRQChr07g0188251' => 'han', 'HanXRQChr08g0235311' => 'han', 'HanXRQChr09g0271011' => 'han', 'HanXRQChr10g0293321' => 'han', 'HanXRQChr13g0388171' => 'han', 'Haze_00916' => 'cav', 'Haze_05063' => 'cav', 'Haze_20814' => 'cav', 'Haze_24128' => 'cav', 'Hma1.2p1_0745F.1_g212010' => 'hma', 'Hma1.2p1_0757F.1_g213260' => 'hma', 'Hma1.2p1_0936F.1_g238840' => 'hma', 'Hma1.2p1_1735F.1_g299890' => 'hma', 'Hma1.2p1_1861F.1_g305685' => 'hma', 'HPP92_003397' => 'vpl', 'HPP92_012597' => 'vpl', 'HPP92_015520' => 'vpl', 'HPP92_015539' => 'vpl', 'HPP92_020373' => 'vpl', 'Hund04938' => 'sun', 'Hund10677' => 'sun', 'Hund11033' => 'sun', 'Hund12155' => 'sun', 'Lalb_Chr01g0022551' => 'lal', 'Lalb_Chr03g0042341' => 'lal', 'Lalb_Chr07g0192931' => 'lal', 'Lalb_Chr12g0209551' => 'lal', 'Lalb_Chr19g0125251' => 'lal', 'Lalb_Chr19g0137891' => 'lal', 'Lalb_Chr21g0304641' => 'lal', 'Lalb_Chr21g0309881' => 'lal', 'Lj1A5T12' => 'lonja', 'Lj1C148G10' => 'lonja', 'Lj2A93T83' => 'lonja', 'Lj3A738G68' => 'lonja', 'Lj3C966T1' => 'lonja', 'Lj3g0018958' => 'lja', 'Lj3g0021831' => 'lja', 'Lj3g0025443' => 'lja', 'Lj4g0026809' => 'lja', 'Lj5g0012558' => 'lja', 'Lj5g0021586' => 'lja', 'Lsat_1_v5_gn_5_156840' => 'lsa', 'Lsat_1_v5_gn_8_73460' => 'lsa', 'Lsat_1_v5_gn_8_73481' => 'lsa', 'Lsat_1_v5_gn_9_31601' => 'lsa', 'Lsat_1_v5_gn_9_77320' => 'lsa', 'Manes.01G171300' => 'mes', 'Manes.01G171400' => 'mes', 'Manes.01G236100' => 'mes', 'Manes.02G130500' => 'mes', 'Manes.02G130600' => 'mes', 'Manes.03G180200' => 'mes', 'Manes.05G007000' => 'mes', 'Manes.08G084400' => 'mes', 'Manes.09G092600' => 'mes', 'Manes.15G027900' => 'mes', 'MBI04_g40948_MAGBIO' => 'mbi', 'MBI14_g12123_MAGBIO' => 'mbi', 'MBI18_g28915_MAGBIO' => 'mbi', 'MCO09G053' => 'mco', 'MCO11G782' => 'mco', 'MCO15G215' => 'mco', 'MD03G1088500' => 'mdo', 'MD03G1088600' => 'mdo', 'MD04G1130800' => 'mdo', 'MD09G1291700' => 'mdo', 'MD11G1097500' => 'mdo', 'MD11G1097600' => 'mdo', 'MD12G1143900' => 'mdo', 'MD13G1191400' => 'mdo', 'MD16G1191500' => 'mdo', 'Medtr1g085570' => 'mtr', 'Medtr1g104610' => 'mtr', 'Medtr2g097520' => 'mtr', 'Medtr4g021800' => 'mtr', 'Medtr4g021825' => 'mtr', 'Medtr4g064270' => 'mtr', 'Medtr4g064380' => 'mtr', 'Medtr7g062150' => 'mtr', 'MELO3C003138.2' => 'cme', 'MELO3C005187.2' => 'cme', 'MELO3C009252.2' => 'cme', 'MELO3C014481.2' => 'cme', 'MELO3C020616.2' => 'cme', 'MELO3C020617.2' => 'cme', 'MELO3C020618.2' => 'cme', 'Migut.G00328' => 'egut', 'Migut.J00320' => 'egut', 'Migut.L01000' => 'egut', 'Migut.L01953' => 'egut', 'MSTRG.10253' => 'ama', 'MSTRG.19077' => 'ama', 'MSTRG.26780' => 'ama', 'MSTRG.4023' => 'ama', 'MSTRG.5655' => 'ama', 'MSTRG.9992' => 'ama', 'Nitab4.5_0000043g0310' => 'nta', 'Nitab4.5_0000463g0080' => 'nta', 'Nitab4.5_0000705g0170' => 'nta', 'Nitab4.5_0001326g0060' => 'nta', 'Nitab4.5_0001628g0030' => 'nta', 'Nitab4.5_0002103g0110' => 'nta', 'Nitab4.5_0002946g0030' => 'nta', 'Nitab4.5_0004639g0030' => 'nta', 'Nn2g11149' => 'nnu', 'Nn2g13389' => 'nnu', 'Nn4g25326' => 'nnu', 'Nn4g26290' => 'nnu', 'Nn5g29865' => 'nnu', 'Oeu004163.1' => 'oeu', 'Oeu006901.1' => 'oeu', 'Oeu010096.1' => 'oeu', 'Oeu024340.1' => 'oeu', 'Oeu048369.1' => 'oeu', 'Os01g0973000' => 'osa', 'Os03g0273800' => 'osa', 'Os03g0701200' => 'osa', 'Os03g0834050' => 'osa', 'Os07g0634400' => 'osa', 'Peaxi162Scf00092g01414' => 'pax', 'Peaxi162Scf00165g00818' => 'pax', 'Peaxi162Scf00309g00516' => 'pax', 'Peaxi162Scf00774g00218' => 'pax', 'PGR004G1824' => 'pgr', 'PGR004G2606' => 'pgr', 'PGR031G2716' => 'pgr', 'PGR102G2460' => 'pgr', 'PGR142G2599' => 'pgr', 'PGSC0003DMG400000843' => 'stu', 'PGSC0003DMG400008829' => 'stu', 'PGSC0003DMG400030418' => 'stu', 'PGSC0003DMG400031834' => 'stu', 'PGSC0003DMG401028300' => 'stu', 'PGSC0003DMG402028300' => 'stu', 'Phvul.001G219300' => 'pvu', 'Phvul.007G056000' => 'pvu', 'Phvul.007G208000' => 'pvu', 'Phvul.008G119500' => 'pvu', 'Phvul.010G011200' => 'pvu', 'Phvul.010G014800' => 'pvu', 'Phvul.011G062900' => 'pvu', 'Phvul.L007043' => 'pvu', 'Potri.001G242300' => 'ptr', 'Potri.002G185300' => 'ptr', 'Potri.006G086900' => 'ptr', 'Potri.008G151700' => 'ptr', 'Potri.009G033500' => 'ptr', 'Potri.010G089300' => 'ptr', 'Potri.014G110800' => 'ptr', 'Pp3c27_8130' => 'ppa', 'Pp3c6_27410' => 'ppa', 'PRCOL_00001659' => 'pco', 'PRCOL_00001927' => 'pco', 'PRCOL_00003649' => 'pco', 'Prupe.1G011600' => 'ppe', 'Prupe.3G000800' => 'ppe', 'Prupe.3G001100' => 'ppe', 'Prupe.6G072700' => 'ppe', 'Prupe.6G072800' => 'ppe', 'Prupe.6G257300' => 'ppe', 'Prupe.8G033000' => 'ppe', 'Psat0s2633g0080' => 'psa', 'Psat0s3396g0080' => 'psa', 'Psat0s3396g0200' => 'psa', 'Psat3g139080' => 'psa', 'Psat5g285080' => 'psa', 'Psat6g157760' => 'psa', 'Psat6g208440' => 'psa', 'Psat7g215320' => 'psa', 'Psat7g215400' => 'psa', 'Psat7g235600' => 'psa', 'Psat7g235760' => 'psa', 'PSO063G4603' => 'pso', 'PSO210G0182' => 'pso', 'PSO210G0196' => 'pso', 'PSO339G0394' => 'pso', 'PSO339G4127' => 'pso', 'PSO513G0064' => 'pso', 'PSO761G0079' => 'pso', 'QL01p031003' => 'qlo', 'QL01p031078' => 'qlo', 'QL06p003004' => 'qlo', 'QL07p048731' => 'qlo', 'QL09p037427' => 'qlo', 'RcHm_v2.0_Chr3g0466361' => 'rch', 'RcHm_v2.0_Chr3g0485571' => 'rch', 'RcHm_v2.0_Chr4g0416551' => 'rch', 'RcHm_v2.0_Chr5g0065831' => 'rch', 'Rhsim01G0230500' => 'rsi', 'Rhsim05G0194000' => 'rsi', 'Rhsim08G0250400' => 'rsi', 'Sabra02G0131000' => 'sbr', 'Sabra06G0066300' => 'sbr', 'Sabra08G0115500' => 'sbr', 'Sabra09G0023900' => 'sbr', 'Sabra10G0054000' => 'sbr', 'Sabra14G0081500' => 'sbr', 'Sabra16G0147100' => 'sbr', 'SalBow2G2957' => 'sbo', 'SalBow4G3320' => 'sbo', 'SalBow8G1894' => 'sbo', 'Sc07g0007950' => 'sci', 'Sc12g0001360' => 'sci', 'Sc13g0004330' => 'sci', 'Sc20g0005010' => 'sci', 'Sed0000361' => 'sed', 'Sed0001706' => 'sed', 'Sed0002422' => 'sed', 'Sed0004029' => 'sed', 'Sed0004602' => 'sed', 'Sed0004943' => 'sed', 'Sed0008646' => 'sed', 'Sed0023313' => 'sed', 'Sed0024843' => 'sed', 'SEGI_00081' => 'sgi', 'SEGI_00947' => 'sgi', 'SEGI_04046' => 'sgi', 'SEGI_06880' => 'sgi', 'SEGI_09736' => 'sgi', 'SEGI_12741' => 'sgi', 'SEGI_14530' => 'sgi', 'SEGI_20705' => 'sgi', 'SEGI_26088' => 'sgi', 'SEGI_28323' => 'sgi', 'SEGI_33343' => 'sgi', 'SGA_v2.0_scaffold126G33775' => 'sas', 'SGA_v2.0_scaffold2G01337' => 'sas', 'SGA_v2.0_scaffold38G15006' => 'sas', 'SGA_v2.0_scaffold39G15264' => 'sas', 'SGA_v2.0_scaffold453G51880' => 'sas', 'SHI12696' => 'shi', 'SMO367G1096' => 'smo', 'Solyc01g068630.3' => 'sly', 'Solyc05g011880.3' => 'sly', 'Solyc06g076300.3' => 'sly', 'Solyc09g010940.4' => 'sly', 'Solyc09g075890.3' => 'sly', 'Sopen01g030560' => 'spe', 'Sopen05g006630' => 'spe', 'Sopen06g032720' => 'spe', 'Sopen09g005660' => 'spe', 'Sopen09g030690' => 'spe', 'Sp4g14540' => 'spa', 'Sp4g20030' => 'spa', 'Sp5g01320' => 'spa', 'Sp6g21170' => 'spa', 'Sp6g21180' => 'spa', 'Sp6g21190' => 'spa', 'Sp6g40220' => 'spa', 'TAR362G0122' => 'tar', 'TAR362G1338' => 'tar', 'TAR369G0590' => 'tar', 'TAR371G0824' => 'tar', 'TAR622G1429' => 'tar', 'TAR623G0734' => 'tar', 'TAR625G0441' => 'tar', 'TAR629G0976' => 'tar', 'TAR633G1195' => 'tar', 'TAR636G2660' => 'tar', 'THA.LOC104799440' => 'tha', 'THA.LOC104800966' => 'tha', 'THA.LOC104806559' => 'tha', 'THA.LOC104810765' => 'tha', 'THA.LOC104816266' => 'tha', 'THA.LOC104817419' => 'tha', 'THA.LOC104827021' => 'tha', 'Thecc.01G327400' => 'tca', 'Thecc.04G229200' => 'tca', 'Thecc.05G037400' => 'tca', 'Thecc.09G318600' => 'tca', 'Thecc.09G318700' => 'tca', 'Thhalv10006238m.g' => 'esa', 'Thhalv10014321m.g' => 'esa', 'Thhalv10014335m.g' => 'esa', 'Thhalv10015826m.g' => 'esa', 'Thhalv10017107m.g' => 'esa', 'Thhalv10017180m.g' => 'esa', 'Thhalv10029339m.g' => 'esa', 'TPR.G1699' => 'tpr', 'TPR.G23609' => 'tpr', 'TPR.G3081' => 'tpr', 'TPR.G40397' => 'tpr', 'TPR.G5522' => 'tpr', 'TPR.G5618' => 'tpr', 'TPR.G5626' => 'tpr', 'TWI09G1632' => 'twi', 'TWI23G1230' => 'twi', 'TWI53G1064' => 'twi', 'TWI59G0751' => 'twi', 'TWI74G0947' => 'twi', 'TWI77G0337' => 'twi', 'TWI79G1254' => 'twi', 'unitig_0.g2341' => 'ugi', 'unitig_26.g10006' => 'ugi', 'unitig_26.g10008' => 'ugi', 'unitig_26.g9192' => 'ugi', 'vmacro14547' => 'vma', 'vmacro15333' => 'vma', 'vmacro18743' => 'vma', 'vmacro20166' => 'vma', 'VMungo0331G0523' => 'vmu', 'VMungo0331G1202' => 'vmu', 'VMungo0720G1228' => 'vmu', 'VMungo0720G1514' => 'vmu', 'VMungo1080G0169' => 'vmu', 'VMungo1127G1475' => 'vmu', 'VMungo1383G1208' => 'vmu', 'VMungo1383G1698' => 'vmu', 'Zm00001eb012270' => 'zma', 'Zm00001eb054100' => 'zma', 'Zm00001eb063350' => 'zma', 'Zm00001eb328560' => 'zma', 'Zm00001eb342820' => 'zma', 'Zm00001eb362210' => 'zma', 'Zm00001eb397730' => 'zma', 'Zm00001eb399750' => 'zma' ), 'gf_id' => 'HOM05D000959', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000959' ), 'data_identifier' => 'HOM05D000959', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000959', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '622', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p07100' => 'bna', 'A03p11720' => 'bna', 'A05p08300' => 'bna', 'A05p13380' => 'bna', 'A09p54130' => 'bna', 'A10p16690' => 'bna', 'A10p16700' => 'bna', 'A10p33390' => 'bna', 'Aa31LG10G16020' => 'aar', 'Aa31LG1G11810' => 'aar', 'Aa31LG1G11830' => 'aar', 'Aa31LG1G22510' => 'aar', 'Aa31LG5G4890' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5793' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2310' => 'aag', 'Actinidia08499' => 'ach', 'Actinidia11262' => 'ach', 'Actinidia23926' => 'ach', 'Actinidia34420' => 'ach', 'Actinidia36970' => 'ach', 'Ah.02g111220' => 'amhyb', 'Ah.15g097750' => 'amhyb', 'AL4G27500' => 'aly', 'AL6G11470' => 'aly', 'AL8G35950' => 'aly', 'AL8G35960' => 'aly', 'AL8G35970' => 'aly', 'Aqoxy1G00912' => 'aox', 'Aqoxy2G02253' => 'aox', 'Aqoxy2G02411' => 'aox', 'Aqoxy5G00485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BZ66YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K8ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM4FUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6BF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HFV7XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25JBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0YNNV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MAKK6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P70IT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP2Z6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V61LZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YWP64R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3S9AI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7PGHH' => 'arhy', 'AT2G32150' => 'ath', 'AT3G62040' => 'ath', 'AT5G02230' => 'ath', 'AT5G59480' => 'ath', 'AT5G59490' => 'ath', 'ATR0332G060' => 'atr', 'ATR0559G190' => 'atr', 'ATR0693G294' => 'atr', 'Atru.chr3.3975' => 'acertr', 'Atru.chr3.3976' => 'acertr', 'Atru.chr3.3977' => 'acertr', 'Atru.chr4.2498' => 'acertr', 'Atru.chr5.838' => 'acertr', 'Atru.chr8.1990' => 'acertr', 'Atru.chr8.1991' => 'acertr', 'Atru.chr8.1992' => 'acertr', 'AUR62001759' => 'cqu', 'AUR62009545' => 'cqu', 'AUR62010474' => 'cqu', 'AUR62025820' => 'cqu', 'AUR62030422' => 'cqu', 'AUR62033605' => 'cqu', 'AUR62038615' => 'cqu', 'AUR62041347' => 'cqu', 'BcaB01g04574' => 'bca', 'BcaB02g09263' => 'bca', 'BcaB02g10453' => 'bca', 'BcaB05g22513' => 'bca', 'BcaB08g36253' => 'bca', 'BcaB08g36254' => 'bca', 'BcaC01g06519' => 'bca', 'BcaC02g11889' => 'bca', 'BcaC03g14010' => 'bca', 'BcaC03g18439' => 'bca', 'BcaC04g19765' => 'bca', 'BcaC09g48432' => 'bca', 'BcaNung07302' => 'bca', 'BolC2t06040H' => 'bol', 'BolC2t07346H' => 'bol', 'BolC3t13817H' => 'bol', 'BolC4t22625H' => 'bol', 'BolC4t23297H' => 'bol', 'BolC8t51278H' => 'bol', 'BolC9t58050H' => 'bol', 'BolC9t58051H' => 'bol', 'BolC9t60163H' => 'bol', 'BraA02t04712Z' => 'bra', 'BraA02t05791Z' => 'bra', 'BraA03t10483Z' => 'bra', 'BraA05t19795Z' => 'bra', 'BraA05t20276Z' => 'bra', 'BraA09t40827Z' => 'bra', 'BraA10t43750Z' => 'bra', 'BraA10t43751Z' => 'bra', 'BraA10t45370Z' => 'bra', 'C02p00400' => 'bna', 'C02p12460' => 'bna', 'C03p13680' => 'bna', 'C04p10270' => 'bna', 'C04p17500' => 'bna', 'C08p37010' => 'bna', 'C09p51880' => 'bna', 'C09p51890' => 'bna', 'C09p74300' => 'bna', 'CAN.G179.26' => 'can', 'CAN.G3384.1' => 'can', 'CAN.G394.68' => 'can', 'CAN.G907.13' => 'can', 'CANSAT11G0012' => 'cansat', 'CANSAT25G1586' => 'cansat', 'CANSAT35G0735' => 'cansat', 'CANSAT54G0556' => 'cansat', 'CANSAT64G0356' => 'cansat', 'CANSAT78G2042' => 'cansat', 'CARHR125920' => 'chi', 'CARHR131910' => 'chi', 'CARHR172390' => 'chi', 'CARHR211140' => 'chi', 'CARHR285850' => 'chi', 'CARHR285860' => 'chi', 'Carub.0004s1347' => 'cru', 'Carub.0004s1960' => 'cru', 'Carub.0005s2880' => 'cru', 'Carub.0006s0107' => 'cru', 'Carub.0008s2015' => 'cru', 'Carub.0008s2016' => 'cru', 'Carub.0008s2017' => 'cru', 'Ca_01315_v3' => 'car', 'Ca_05063_v3' => 'car', 'Ca_10231_v3' => 'car', 'Ca_10913_v3' => 'car', 'Ca_19156_v3' => 'car', 'Ca_23644_v3' => 'car', 'Ca_26735_v3' => 'car', 'Cc01_g13130' => 'ccan', 'Cc02_g21690' => 'ccan', 'Cc03_g03600' => 'ccan', 'Cc06_g02510' => 'ccan', 'CDE02G1265' => 'cde', 'CDE05G0415' => 'cde', 'CDE08G1082' => 'cde', 'Cfa005780' => 'cfa', 'Cfa011522' => 'cfa', 'Cfa011523' => 'cfa', 'Cfa015627' => 'cfa', 'Cfa017359' => 'cfa', 'Ciclev10005687m.g' => 'ccl', 'Ciclev10012173m.g' => 'ccl', 'Ciclev10021621m.g' => 'ccl', 'Ciclev10028968m.g' => 'ccl', 'Ciclev10029907m.g' => 'ccl', 'CiPaw.01G164800' => 'cil', 'CiPaw.07G083700' => 'cil', 'CiPaw.07G127000' => 'cil', 'CiPaw.07G136900' => 'cil', 'CiPaw.08G081700' => 'cil', 'CiPaw.09G194600' => 'cil', 'CiPaw.10G146500' => 'cil', 'CiPaw.13G091500' => 'cil', 'CiPaw.13G091600' => 'cil', 'ClCG00G003390' => 'cla', 'ClCG01G007220' => 'cla', 'ClCG03G001370' => 'cla', 'ClCG04G008100' => 'cla', 'ClCG06G006110' => 'cla', 'ClCG06G006130' => 'cla', 'ClCG10G021210' => 'cla', 'COL.COLO4_07648' => 'col', 'COL.COLO4_07650' => 'col', 'COL.COLO4_07651' => 'col', 'COL.COLO4_14780' => 'col', 'COL.COLO4_18546' => 'col', 'COL.COLO4_18547' => 'col', 'COL.COLO4_23103' => 'col', 'COL.COLO4_30419' => 'col', 'COL.COLO4_34232' => 'col', 'Cpa.g.sc169.20' => 'cpa', 'Cpa.g.sc57.45' => 'cpa', 'Cpa.g.sc58.124' => 'cpa', 'Cpa.g.sc58.125' => 'cpa', 'Cpa.g.sc81.118' => 'cpa', 'Cpa.g.sc81.119' => 'cpa', 'Cre12.g524700' => 'cre', 'CsaV3_1G034430' => 'csa', 'CsaV3_1G034440' => 'csa', 'CsaV3_1G034450' => 'csa', 'CsaV3_3G034830' => 'csa', 'CsaV3_4G025090' => 'csa', 'CsaV3_5G018660' => 'csa', 'CsaV3_6G038160' => 'csa', 'CSS0003447' => 'camsi', 'CSS0017840' => 'camsi', 'CSS0019260' => 'camsi', 'CSS0040375' => 'camsi', 'CSS0042533' => 'camsi', 'DCAR_005960' => 'dca', 'DCAR_012104' => 'dca', 'DCAR_012105' => 'dca', 'DCAR_012293' => 'dca', 'DCAR_015632' => 'dca', 'DCAR_024602' => 'dca', 'DCAR_028752' => 'dca', 'Dinv06261' => 'din', 'Dinv13982' => 'din', 'Dinv17029' => 'din', 'Dinv18463' => 'din', 'Dinv33181' => 'din', 'Dinv35585' => 'din', 'Dinv37161' => 'din', 'Dinv42977' => 'din', 'Dinv43122' => 'din', 'Dinv44517' => 'din', 'Duzib093G0256' => 'dzi', 'Duzib106G1254' => 'dzi', 'Duzib128G1789' => 'dzi', 'Duzib133G0633' => 'dzi', 'Duzib138G0510' => 'dzi', 'Duzib150G1084' => 'dzi', 'Duzib168G0488' => 'dzi', 'Duzib168G1523' => 'dzi', 'Duzib170G0133' => 'dzi', 'ECA234G1433' => 'eca', 'ECA236G1432' => 'eca', 'ECA236G2256' => 'eca', 'ECA236G2365' => 'eca', 'ECA236G4830' => 'eca', 'ECA248G1505' => 'eca', 'EL10Ac3g06431' => 'bvu', 'EL10Ac5g12577' => 'bvu', 'EL10Ac6g13533' => 'bvu', 'EL10Ac7g16045' => 'bvu', 'Eucgr.A01281' => 'egr', 'Eucgr.B02326' => 'egr', 'Eucgr.H03532' => 'egr', 'Eucgr.K00553' => 'egr', 'Eucgr.K03116' => 'egr', 'FAN02G3963' => 'fan', 'FAN05G0438' => 'fan', 'FAN09G2434' => 'fan', 'FAN12G3984' => 'fan', 'FAN14G0798' => 'fan', 'FAN17G0652' => 'fan', 'FAN19G1988' => 'fan', 'FAN22G0632' => 'fan', 'FAN23G0387' => 'fan', 'FAN26G1323' => 'fan', 'FAN28G0666' => 'fan', 'FvH4_1g26080' => 'fve', 'FvH4_3g36780' => 'fve', 'FvH4_4g15270' => 'fve', 'FvH4_6g13490' => 'fve', 'Glyma.01G098700' => 'gma', 'Glyma.03G065900' => 'gma', 'Glyma.03G073754' => 'gma', 'Glyma.03G073758' => 'gma', 'Glyma.03G083200' => 'gma', 'Glyma.03G225500' => 'gma', 'Glyma.05G037766' => 'gma', 'Glyma.07G133500' => 'gma', 'Glyma.10G139400' => 'gma', 'Glyma.10G248900' => 'gma', 'Glyma.11G137800' => 'gma', 'Glyma.12G061300' => 'gma', 'Glyma.13G337900' => 'gma', 'Glyma.15G036600' => 'gma', 'Glyma.18G182800' => 'gma', 'Glyma.19G222500' => 'gma', 'Glyma.20G144800' => 'gma', 'Gohir.A01G222000' => 'ghi', 'Gohir.A03G044000' => 'ghi', 'Gohir.A03G044100' => 'ghi', 'Gohir.A04G083100' => 'ghi', 'Gohir.A07G127200' => 'ghi', 'Gohir.A07G132400' => 'ghi', 'Gohir.A08G000700' => 'ghi', 'Gohir.A11G327300' => 'ghi', 'Gohir.D01G211500' => 'ghi', 'Gohir.D03G123400' => 'ghi', 'Gohir.D03G123500' => 'ghi', 'Gohir.D04G121800' => 'ghi', 'Gohir.D07G131500' => 'ghi', 'Gohir.D07G136600' => 'ghi', 'Gohir.D08G011600' => 'ghi', 'Gohir.D11G346200' => 'ghi', 'Gorai.001G142800' => 'gra', 'Gorai.001G148700' => 'gra', 'Gorai.002G257300' => 'gra', 'Gorai.003G130000' => 'gra', 'Gorai.003G130100' => 'gra', 'Gorai.004G005300' => 'gra', 'Gorai.007G376500' => 'gra', 'Gorai.012G104700' => 'gra', 'GSVIVG01017946001' => 'vvi', 'GSVIVG01024928001' => 'vvi', 'GSVIVG01028227001' => 'vvi', 'GSVIVG01034151001' => 'vvi', 'HanXRQChr05g0135031' => 'han', 'HanXRQChr05g0135041' => 'han', 'HanXRQChr05g0140021' => 'han', 'HanXRQChr06g0178981' => 'han', 'HanXRQChr07g0188251' => 'han', 'HanXRQChr08g0235311' => 'han', 'HanXRQChr09g0271011' => 'han', 'HanXRQChr10g0293321' => 'han', 'HanXRQChr13g0388171' => 'han', 'Haze_00916' => 'cav', 'Haze_05063' => 'cav', 'Haze_20814' => 'cav', 'Haze_24128' => 'cav', 'Hma1.2p1_0745F.1_g212010' => 'hma', 'Hma1.2p1_0757F.1_g213260' => 'hma', 'Hma1.2p1_0936F.1_g238840' => 'hma', 'Hma1.2p1_1735F.1_g299890' => 'hma', 'Hma1.2p1_1861F.1_g305685' => 'hma', 'HPP92_003397' => 'vpl', 'HPP92_012597' => 'vpl', 'HPP92_015520' => 'vpl', 'HPP92_015539' => 'vpl', 'HPP92_020373' => 'vpl', 'Hund04938' => 'sun', 'Hund10677' => 'sun', 'Hund11033' => 'sun', 'Hund12155' => 'sun', 'Lalb_Chr01g0022551' => 'lal', 'Lalb_Chr03g0042341' => 'lal', 'Lalb_Chr07g0192931' => 'lal', 'Lalb_Chr12g0209551' => 'lal', 'Lalb_Chr19g0125251' => 'lal', 'Lalb_Chr19g0137891' => 'lal', 'Lalb_Chr21g0304641' => 'lal', 'Lalb_Chr21g0309881' => 'lal', 'Lj1A5T12' => 'lonja', 'Lj1C148G10' => 'lonja', 'Lj2A93T83' => 'lonja', 'Lj3A738G68' => 'lonja', 'Lj3C966T1' => 'lonja', 'Lj3g0018958' => 'lja', 'Lj3g0021831' => 'lja', 'Lj3g0025443' => 'lja', 'Lj4g0026809' => 'lja', 'Lj5g0012558' => 'lja', 'Lj5g0021586' => 'lja', 'Lsat_1_v5_gn_5_156840' => 'lsa', 'Lsat_1_v5_gn_8_73460' => 'lsa', 'Lsat_1_v5_gn_8_73481' => 'lsa', 'Lsat_1_v5_gn_9_31601' => 'lsa', 'Lsat_1_v5_gn_9_77320' => 'lsa', 'Manes.01G171300' => 'mes', 'Manes.01G171400' => 'mes', 'Manes.01G236100' => 'mes', 'Manes.02G130500' => 'mes', 'Manes.02G130600' => 'mes', 'Manes.03G180200' => 'mes', 'Manes.05G007000' => 'mes', 'Manes.08G084400' => 'mes', 'Manes.09G092600' => 'mes', 'Manes.15G027900' => 'mes', 'MBI04_g40948_MAGBIO' => 'mbi', 'MBI14_g12123_MAGBIO' => 'mbi', 'MBI18_g28915_MAGBIO' => 'mbi', 'MCO09G053' => 'mco', 'MCO11G782' => 'mco', 'MCO15G215' => 'mco', 'MD03G1088500' => 'mdo', 'MD03G1088600' => 'mdo', 'MD04G1130800' => 'mdo', 'MD09G1291700' => 'mdo', 'MD11G1097500' => 'mdo', 'MD11G1097600' => 'mdo', 'MD12G1143900' => 'mdo', 'MD13G1191400' => 'mdo', 'MD16G1191500' => 'mdo', 'Medtr1g085570' => 'mtr', 'Medtr1g104610' => 'mtr', 'Medtr2g097520' => 'mtr', 'Medtr4g021800' => 'mtr', 'Medtr4g021825' => 'mtr', 'Medtr4g064270' => 'mtr', 'Medtr4g064380' => 'mtr', 'Medtr7g062150' => 'mtr', 'MELO3C003138.2' => 'cme', 'MELO3C005187.2' => 'cme', 'MELO3C009252.2' => 'cme', 'MELO3C014481.2' => 'cme', 'MELO3C020616.2' => 'cme', 'MELO3C020617.2' => 'cme', 'MELO3C020618.2' => 'cme', 'Migut.G00328' => 'egut', 'Migut.J00320' => 'egut', 'Migut.L01000' => 'egut', 'Migut.L01953' => 'egut', 'MSTRG.10253' => 'ama', 'MSTRG.19077' => 'ama', 'MSTRG.26780' => 'ama', 'MSTRG.4023' => 'ama', 'MSTRG.5655' => 'ama', 'MSTRG.9992' => 'ama', 'Nitab4.5_0000043g0310' => 'nta', 'Nitab4.5_0000463g0080' => 'nta', 'Nitab4.5_0000705g0170' => 'nta', 'Nitab4.5_0001326g0060' => 'nta', 'Nitab4.5_0001628g0030' => 'nta', 'Nitab4.5_0002103g0110' => 'nta', 'Nitab4.5_0002946g0030' => 'nta', 'Nitab4.5_0004639g0030' => 'nta', 'Nn2g11149' => 'nnu', 'Nn2g13389' => 'nnu', 'Nn4g25326' => 'nnu', 'Nn4g26290' => 'nnu', 'Nn5g29865' => 'nnu', 'Oeu004163.1' => 'oeu', 'Oeu006901.1' => 'oeu', 'Oeu010096.1' => 'oeu', 'Oeu024340.1' => 'oeu', 'Oeu048369.1' => 'oeu', 'Os01g0973000' => 'osa', 'Os03g0273800' => 'osa', 'Os03g0701200' => 'osa', 'Os03g0834050' => 'osa', 'Os07g0634400' => 'osa', 'Peaxi162Scf00092g01414' => 'pax', 'Peaxi162Scf00165g00818' => 'pax', 'Peaxi162Scf00309g00516' => 'pax', 'Peaxi162Scf00774g00218' => 'pax', 'PGR004G1824' => 'pgr', 'PGR004G2606' => 'pgr', 'PGR031G2716' => 'pgr', 'PGR102G2460' => 'pgr', 'PGR142G2599' => 'pgr', 'PGSC0003DMG400000843' => 'stu', 'PGSC0003DMG400008829' => 'stu', 'PGSC0003DMG400030418' => 'stu', 'PGSC0003DMG400031834' => 'stu', 'PGSC0003DMG401028300' => 'stu', 'PGSC0003DMG402028300' => 'stu', 'Phvul.001G219300' => 'pvu', 'Phvul.007G056000' => 'pvu', 'Phvul.007G208000' => 'pvu', 'Phvul.008G119500' => 'pvu', 'Phvul.010G011200' => 'pvu', 'Phvul.010G014800' => 'pvu', 'Phvul.011G062900' => 'pvu', 'Phvul.L007043' => 'pvu', 'Potri.001G242300' => 'ptr', 'Potri.002G185300' => 'ptr', 'Potri.006G086900' => 'ptr', 'Potri.008G151700' => 'ptr', 'Potri.009G033500' => 'ptr', 'Potri.010G089300' => 'ptr', 'Potri.014G110800' => 'ptr', 'Pp3c27_8130' => 'ppa', 'Pp3c6_27410' => 'ppa', 'PRCOL_00001659' => 'pco', 'PRCOL_00001927' => 'pco', 'PRCOL_00003649' => 'pco', 'Prupe.1G011600' => 'ppe', 'Prupe.3G000800' => 'ppe', 'Prupe.3G001100' => 'ppe', 'Prupe.6G072700' => 'ppe', 'Prupe.6G072800' => 'ppe', 'Prupe.6G257300' => 'ppe', 'Prupe.8G033000' => 'ppe', 'Psat0s2633g0080' => 'psa', 'Psat0s3396g0080' => 'psa', 'Psat0s3396g0200' => 'psa', 'Psat3g139080' => 'psa', 'Psat5g285080' => 'psa', 'Psat6g157760' => 'psa', 'Psat6g208440' => 'psa', 'Psat7g215320' => 'psa', 'Psat7g215400' => 'psa', 'Psat7g235600' => 'psa', 'Psat7g235760' => 'psa', 'PSO063G4603' => 'pso', 'PSO210G0182' => 'pso', 'PSO210G0196' => 'pso', 'PSO339G0394' => 'pso', 'PSO339G4127' => 'pso', 'PSO513G0064' => 'pso', 'PSO761G0079' => 'pso', 'QL01p031003' => 'qlo', 'QL01p031078' => 'qlo', 'QL06p003004' => 'qlo', 'QL07p048731' => 'qlo', 'QL09p037427' => 'qlo', 'RcHm_v2.0_Chr3g0466361' => 'rch', 'RcHm_v2.0_Chr3g0485571' => 'rch', 'RcHm_v2.0_Chr4g0416551' => 'rch', 'RcHm_v2.0_Chr5g0065831' => 'rch', 'Rhsim01G0230500' => 'rsi', 'Rhsim05G0194000' => 'rsi', 'Rhsim08G0250400' => 'rsi', 'Sabra02G0131000' => 'sbr', 'Sabra06G0066300' => 'sbr', 'Sabra08G0115500' => 'sbr', 'Sabra09G0023900' => 'sbr', 'Sabra10G0054000' => 'sbr', 'Sabra14G0081500' => 'sbr', 'Sabra16G0147100' => 'sbr', 'SalBow2G2957' => 'sbo', 'SalBow4G3320' => 'sbo', 'SalBow8G1894' => 'sbo', 'Sc07g0007950' => 'sci', 'Sc12g0001360' => 'sci', 'Sc13g0004330' => 'sci', 'Sc20g0005010' => 'sci', 'Sed0000361' => 'sed', 'Sed0001706' => 'sed', 'Sed0002422' => 'sed', 'Sed0004029' => 'sed', 'Sed0004602' => 'sed', 'Sed0004943' => 'sed', 'Sed0008646' => 'sed', 'Sed0023313' => 'sed', 'Sed0024843' => 'sed', 'SEGI_00081' => 'sgi', 'SEGI_00947' => 'sgi', 'SEGI_04046' => 'sgi', 'SEGI_06880' => 'sgi', 'SEGI_09736' => 'sgi', 'SEGI_12741' => 'sgi', 'SEGI_14530' => 'sgi', 'SEGI_20705' => 'sgi', 'SEGI_26088' => 'sgi', 'SEGI_28323' => 'sgi', 'SEGI_33343' => 'sgi', 'SGA_v2.0_scaffold126G33775' => 'sas', 'SGA_v2.0_scaffold2G01337' => 'sas', 'SGA_v2.0_scaffold38G15006' => 'sas', 'SGA_v2.0_scaffold39G15264' => 'sas', 'SGA_v2.0_scaffold453G51880' => 'sas', 'SHI12696' => 'shi', 'SMO367G1096' => 'smo', 'Solyc01g068630.3' => 'sly', 'Solyc05g011880.3' => 'sly', 'Solyc06g076300.3' => 'sly', 'Solyc09g010940.4' => 'sly', 'Solyc09g075890.3' => 'sly', 'Sopen01g030560' => 'spe', 'Sopen05g006630' => 'spe', 'Sopen06g032720' => 'spe', 'Sopen09g005660' => 'spe', 'Sopen09g030690' => 'spe', 'Sp4g14540' => 'spa', 'Sp4g20030' => 'spa', 'Sp5g01320' => 'spa', 'Sp6g21170' => 'spa', 'Sp6g21180' => 'spa', 'Sp6g21190' => 'spa', 'Sp6g40220' => 'spa', 'TAR362G0122' => 'tar', 'TAR362G1338' => 'tar', 'TAR369G0590' => 'tar', 'TAR371G0824' => 'tar', 'TAR622G1429' => 'tar', 'TAR623G0734' => 'tar', 'TAR625G0441' => 'tar', 'TAR629G0976' => 'tar', 'TAR633G1195' => 'tar', 'TAR636G2660' => 'tar', 'THA.LOC104799440' => 'tha', 'THA.LOC104800966' => 'tha', 'THA.LOC104806559' => 'tha', 'THA.LOC104810765' => 'tha', 'THA.LOC104816266' => 'tha', 'THA.LOC104817419' => 'tha', 'THA.LOC104827021' => 'tha', 'Thecc.01G327400' => 'tca', 'Thecc.04G229200' => 'tca', 'Thecc.05G037400' => 'tca', 'Thecc.09G318600' => 'tca', 'Thecc.09G318700' => 'tca', 'Thhalv10006238m.g' => 'esa', 'Thhalv10014321m.g' => 'esa', 'Thhalv10014335m.g' => 'esa', 'Thhalv10015826m.g' => 'esa', 'Thhalv10017107m.g' => 'esa', 'Thhalv10017180m.g' => 'esa', 'Thhalv10029339m.g' => 'esa', 'TPR.G1699' => 'tpr', 'TPR.G23609' => 'tpr', 'TPR.G3081' => 'tpr', 'TPR.G40397' => 'tpr', 'TPR.G5522' => 'tpr', 'TPR.G5618' => 'tpr', 'TPR.G5626' => 'tpr', 'TWI09G1632' => 'twi', 'TWI23G1230' => 'twi', 'TWI53G1064' => 'twi', 'TWI59G0751' => 'twi', 'TWI74G0947' => 'twi', 'TWI77G0337' => 'twi', 'TWI79G1254' => 'twi', 'unitig_0.g2341' => 'ugi', 'unitig_26.g10006' => 'ugi', 'unitig_26.g10008' => 'ugi', 'unitig_26.g9192' => 'ugi', 'vmacro14547' => 'vma', 'vmacro15333' => 'vma', 'vmacro18743' => 'vma', 'vmacro20166' => 'vma', 'VMungo0331G0523' => 'vmu', 'VMungo0331G1202' => 'vmu', 'VMungo0720G1228' => 'vmu', 'VMungo0720G1514' => 'vmu', 'VMungo1080G0169' => 'vmu', 'VMungo1127G1475' => 'vmu', 'VMungo1383G1208' => 'vmu', 'VMungo1383G1698' => 'vmu', 'Zm00001eb012270' => 'zma', 'Zm00001eb054100' => 'zma', 'Zm00001eb063350' => 'zma', 'Zm00001eb328560' => 'zma', 'Zm00001eb342820' => 'zma', 'Zm00001eb362210' => 'zma', 'Zm00001eb397730' => 'zma', 'Zm00001eb399750' => 'zma' ) $gf_id = 'HOM05D000959' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000959' ) $data_identifier = 'HOM05D000959' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 5, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 5, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 10, 'mbi' => (int) 3, 'mco' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 2, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 3, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 11, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399750' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000959', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '622', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p07100' => 'bna', 'A03p11720' => 'bna', 'A05p08300' => 'bna', 'A05p13380' => 'bna', 'A09p54130' => 'bna', 'A10p16690' => 'bna', 'A10p16700' => 'bna', 'A10p33390' => 'bna', 'Aa31LG10G16020' => 'aar', 'Aa31LG1G11810' => 'aar', 'Aa31LG1G11830' => 'aar', 'Aa31LG1G22510' => 'aar', 'Aa31LG5G4890' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5793' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2310' => 'aag', 'Actinidia08499' => 'ach', 'Actinidia11262' => 'ach', 'Actinidia23926' => 'ach', 'Actinidia34420' => 'ach', 'Actinidia36970' => 'ach', 'Ah.02g111220' => 'amhyb', 'Ah.15g097750' => 'amhyb', 'AL4G27500' => 'aly', 'AL6G11470' => 'aly', 'AL8G35950' => 'aly', 'AL8G35960' => 'aly', 'AL8G35970' => 'aly', 'Aqoxy1G00912' => 'aox', 'Aqoxy2G02253' => 'aox', 'Aqoxy2G02411' => 'aox', 'Aqoxy5G00485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BZ66YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K8ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM4FUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6BF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HFV7XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25JBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0YNNV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MAKK6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P70IT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP2Z6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V61LZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YWP64R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3S9AI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7PGHH' => 'arhy', 'AT2G32150' => 'ath', 'AT3G62040' => 'ath', 'AT5G02230' => 'ath', 'AT5G59480' => 'ath', 'AT5G59490' => 'ath', 'ATR0332G060' => 'atr', 'ATR0559G190' => 'atr', 'ATR0693G294' => 'atr', 'Atru.chr3.3975' => 'acertr', 'Atru.chr3.3976' => 'acertr', 'Atru.chr3.3977' => 'acertr', 'Atru.chr4.2498' => 'acertr', 'Atru.chr5.838' => 'acertr', 'Atru.chr8.1990' => 'acertr', 'Atru.chr8.1991' => 'acertr', 'Atru.chr8.1992' => 'acertr', 'AUR62001759' => 'cqu', 'AUR62009545' => 'cqu', 'AUR62010474' => 'cqu', 'AUR62025820' => 'cqu', 'AUR62030422' => 'cqu', 'AUR62033605' => 'cqu', 'AUR62038615' => 'cqu', 'AUR62041347' => 'cqu', 'BcaB01g04574' => 'bca', 'BcaB02g09263' => 'bca', 'BcaB02g10453' => 'bca', 'BcaB05g22513' => 'bca', 'BcaB08g36253' => 'bca', 'BcaB08g36254' => 'bca', 'BcaC01g06519' => 'bca', 'BcaC02g11889' => 'bca', 'BcaC03g14010' => 'bca', 'BcaC03g18439' => 'bca', 'BcaC04g19765' => 'bca', 'BcaC09g48432' => 'bca', 'BcaNung07302' => 'bca', 'BolC2t06040H' => 'bol', 'BolC2t07346H' => 'bol', 'BolC3t13817H' => 'bol', 'BolC4t22625H' => 'bol', 'BolC4t23297H' => 'bol', 'BolC8t51278H' => 'bol', 'BolC9t58050H' => 'bol', 'BolC9t58051H' => 'bol', 'BolC9t60163H' => 'bol', 'BraA02t04712Z' => 'bra', 'BraA02t05791Z' => 'bra', 'BraA03t10483Z' => 'bra', 'BraA05t19795Z' => 'bra', 'BraA05t20276Z' => 'bra', 'BraA09t40827Z' => 'bra', 'BraA10t43750Z' => 'bra', 'BraA10t43751Z' => 'bra', 'BraA10t45370Z' => 'bra', 'C02p00400' => 'bna', 'C02p12460' => 'bna', 'C03p13680' => 'bna', 'C04p10270' => 'bna', 'C04p17500' => 'bna', 'C08p37010' => 'bna', 'C09p51880' => 'bna', 'C09p51890' => 'bna', 'C09p74300' => 'bna', 'CAN.G179.26' => 'can', 'CAN.G3384.1' => 'can', 'CAN.G394.68' => 'can', 'CAN.G907.13' => 'can', 'CANSAT11G0012' => 'cansat', 'CANSAT25G1586' => 'cansat', 'CANSAT35G0735' => 'cansat', 'CANSAT54G0556' => 'cansat', 'CANSAT64G0356' => 'cansat', 'CANSAT78G2042' => 'cansat', 'CARHR125920' => 'chi', 'CARHR131910' => 'chi', 'CARHR172390' => 'chi', 'CARHR211140' => 'chi', 'CARHR285850' => 'chi', 'CARHR285860' => 'chi', 'Carub.0004s1347' => 'cru', 'Carub.0004s1960' => 'cru', 'Carub.0005s2880' => 'cru', 'Carub.0006s0107' => 'cru', 'Carub.0008s2015' => 'cru', 'Carub.0008s2016' => 'cru', 'Carub.0008s2017' => 'cru', 'Ca_01315_v3' => 'car', 'Ca_05063_v3' => 'car', 'Ca_10231_v3' => 'car', 'Ca_10913_v3' => 'car', 'Ca_19156_v3' => 'car', 'Ca_23644_v3' => 'car', 'Ca_26735_v3' => 'car', 'Cc01_g13130' => 'ccan', 'Cc02_g21690' => 'ccan', 'Cc03_g03600' => 'ccan', 'Cc06_g02510' => 'ccan', 'CDE02G1265' => 'cde', 'CDE05G0415' => 'cde', 'CDE08G1082' => 'cde', 'Cfa005780' => 'cfa', 'Cfa011522' => 'cfa', 'Cfa011523' => 'cfa', 'Cfa015627' => 'cfa', 'Cfa017359' => 'cfa', 'Ciclev10005687m.g' => 'ccl', 'Ciclev10012173m.g' => 'ccl', 'Ciclev10021621m.g' => 'ccl', 'Ciclev10028968m.g' => 'ccl', 'Ciclev10029907m.g' => 'ccl', 'CiPaw.01G164800' => 'cil', 'CiPaw.07G083700' => 'cil', 'CiPaw.07G127000' => 'cil', 'CiPaw.07G136900' => 'cil', 'CiPaw.08G081700' => 'cil', 'CiPaw.09G194600' => 'cil', 'CiPaw.10G146500' => 'cil', 'CiPaw.13G091500' => 'cil', 'CiPaw.13G091600' => 'cil', 'ClCG00G003390' => 'cla', 'ClCG01G007220' => 'cla', 'ClCG03G001370' => 'cla', 'ClCG04G008100' => 'cla', 'ClCG06G006110' => 'cla', 'ClCG06G006130' => 'cla', 'ClCG10G021210' => 'cla', 'COL.COLO4_07648' => 'col', 'COL.COLO4_07650' => 'col', 'COL.COLO4_07651' => 'col', 'COL.COLO4_14780' => 'col', 'COL.COLO4_18546' => 'col', 'COL.COLO4_18547' => 'col', 'COL.COLO4_23103' => 'col', 'COL.COLO4_30419' => 'col', 'COL.COLO4_34232' => 'col', 'Cpa.g.sc169.20' => 'cpa', 'Cpa.g.sc57.45' => 'cpa', 'Cpa.g.sc58.124' => 'cpa', 'Cpa.g.sc58.125' => 'cpa', 'Cpa.g.sc81.118' => 'cpa', 'Cpa.g.sc81.119' => 'cpa', 'Cre12.g524700' => 'cre', 'CsaV3_1G034430' => 'csa', 'CsaV3_1G034440' => 'csa', 'CsaV3_1G034450' => 'csa', 'CsaV3_3G034830' => 'csa', 'CsaV3_4G025090' => 'csa', 'CsaV3_5G018660' => 'csa', 'CsaV3_6G038160' => 'csa', 'CSS0003447' => 'camsi', 'CSS0017840' => 'camsi', 'CSS0019260' => 'camsi', 'CSS0040375' => 'camsi', 'CSS0042533' => 'camsi', 'DCAR_005960' => 'dca', 'DCAR_012104' => 'dca', 'DCAR_012105' => 'dca', 'DCAR_012293' => 'dca', 'DCAR_015632' => 'dca', 'DCAR_024602' => 'dca', 'DCAR_028752' => 'dca', 'Dinv06261' => 'din', 'Dinv13982' => 'din', 'Dinv17029' => 'din', 'Dinv18463' => 'din', 'Dinv33181' => 'din', 'Dinv35585' => 'din', 'Dinv37161' => 'din', 'Dinv42977' => 'din', 'Dinv43122' => 'din', 'Dinv44517' => 'din', 'Duzib093G0256' => 'dzi', 'Duzib106G1254' => 'dzi', 'Duzib128G1789' => 'dzi', 'Duzib133G0633' => 'dzi', 'Duzib138G0510' => 'dzi', 'Duzib150G1084' => 'dzi', 'Duzib168G0488' => 'dzi', 'Duzib168G1523' => 'dzi', 'Duzib170G0133' => 'dzi', 'ECA234G1433' => 'eca', 'ECA236G1432' => 'eca', 'ECA236G2256' => 'eca', 'ECA236G2365' => 'eca', 'ECA236G4830' => 'eca', 'ECA248G1505' => 'eca', 'EL10Ac3g06431' => 'bvu', 'EL10Ac5g12577' => 'bvu', 'EL10Ac6g13533' => 'bvu', 'EL10Ac7g16045' => 'bvu', 'Eucgr.A01281' => 'egr', 'Eucgr.B02326' => 'egr', 'Eucgr.H03532' => 'egr', 'Eucgr.K00553' => 'egr', 'Eucgr.K03116' => 'egr', 'FAN02G3963' => 'fan', 'FAN05G0438' => 'fan', 'FAN09G2434' => 'fan', 'FAN12G3984' => 'fan', 'FAN14G0798' => 'fan', 'FAN17G0652' => 'fan', 'FAN19G1988' => 'fan', 'FAN22G0632' => 'fan', 'FAN23G0387' => 'fan', 'FAN26G1323' => 'fan', 'FAN28G0666' => 'fan', 'FvH4_1g26080' => 'fve', 'FvH4_3g36780' => 'fve', 'FvH4_4g15270' => 'fve', 'FvH4_6g13490' => 'fve', 'Glyma.01G098700' => 'gma', 'Glyma.03G065900' => 'gma', 'Glyma.03G073754' => 'gma', 'Glyma.03G073758' => 'gma', 'Glyma.03G083200' => 'gma', 'Glyma.03G225500' => 'gma', 'Glyma.05G037766' => 'gma', 'Glyma.07G133500' => 'gma', 'Glyma.10G139400' => 'gma', 'Glyma.10G248900' => 'gma', 'Glyma.11G137800' => 'gma', 'Glyma.12G061300' => 'gma', 'Glyma.13G337900' => 'gma', 'Glyma.15G036600' => 'gma', 'Glyma.18G182800' => 'gma', 'Glyma.19G222500' => 'gma', 'Glyma.20G144800' => 'gma', 'Gohir.A01G222000' => 'ghi', 'Gohir.A03G044000' => 'ghi', 'Gohir.A03G044100' => 'ghi', 'Gohir.A04G083100' => 'ghi', 'Gohir.A07G127200' => 'ghi', 'Gohir.A07G132400' => 'ghi', 'Gohir.A08G000700' => 'ghi', 'Gohir.A11G327300' => 'ghi', 'Gohir.D01G211500' => 'ghi', 'Gohir.D03G123400' => 'ghi', 'Gohir.D03G123500' => 'ghi', 'Gohir.D04G121800' => 'ghi', 'Gohir.D07G131500' => 'ghi', 'Gohir.D07G136600' => 'ghi', 'Gohir.D08G011600' => 'ghi', 'Gohir.D11G346200' => 'ghi', 'Gorai.001G142800' => 'gra', 'Gorai.001G148700' => 'gra', 'Gorai.002G257300' => 'gra', 'Gorai.003G130000' => 'gra', 'Gorai.003G130100' => 'gra', 'Gorai.004G005300' => 'gra', 'Gorai.007G376500' => 'gra', 'Gorai.012G104700' => 'gra', 'GSVIVG01017946001' => 'vvi', 'GSVIVG01024928001' => 'vvi', 'GSVIVG01028227001' => 'vvi', 'GSVIVG01034151001' => 'vvi', 'HanXRQChr05g0135031' => 'han', 'HanXRQChr05g0135041' => 'han', 'HanXRQChr05g0140021' => 'han', 'HanXRQChr06g0178981' => 'han', 'HanXRQChr07g0188251' => 'han', 'HanXRQChr08g0235311' => 'han', 'HanXRQChr09g0271011' => 'han', 'HanXRQChr10g0293321' => 'han', 'HanXRQChr13g0388171' => 'han', 'Haze_00916' => 'cav', 'Haze_05063' => 'cav', 'Haze_20814' => 'cav', 'Haze_24128' => 'cav', 'Hma1.2p1_0745F.1_g212010' => 'hma', 'Hma1.2p1_0757F.1_g213260' => 'hma', 'Hma1.2p1_0936F.1_g238840' => 'hma', 'Hma1.2p1_1735F.1_g299890' => 'hma', 'Hma1.2p1_1861F.1_g305685' => 'hma', 'HPP92_003397' => 'vpl', 'HPP92_012597' => 'vpl', 'HPP92_015520' => 'vpl', 'HPP92_015539' => 'vpl', 'HPP92_020373' => 'vpl', 'Hund04938' => 'sun', 'Hund10677' => 'sun', 'Hund11033' => 'sun', 'Hund12155' => 'sun', 'Lalb_Chr01g0022551' => 'lal', 'Lalb_Chr03g0042341' => 'lal', 'Lalb_Chr07g0192931' => 'lal', 'Lalb_Chr12g0209551' => 'lal', 'Lalb_Chr19g0125251' => 'lal', 'Lalb_Chr19g0137891' => 'lal', 'Lalb_Chr21g0304641' => 'lal', 'Lalb_Chr21g0309881' => 'lal', 'Lj1A5T12' => 'lonja', 'Lj1C148G10' => 'lonja', 'Lj2A93T83' => 'lonja', 'Lj3A738G68' => 'lonja', 'Lj3C966T1' => 'lonja', 'Lj3g0018958' => 'lja', 'Lj3g0021831' => 'lja', 'Lj3g0025443' => 'lja', 'Lj4g0026809' => 'lja', 'Lj5g0012558' => 'lja', 'Lj5g0021586' => 'lja', 'Lsat_1_v5_gn_5_156840' => 'lsa', 'Lsat_1_v5_gn_8_73460' => 'lsa', 'Lsat_1_v5_gn_8_73481' => 'lsa', 'Lsat_1_v5_gn_9_31601' => 'lsa', 'Lsat_1_v5_gn_9_77320' => 'lsa', 'Manes.01G171300' => 'mes', 'Manes.01G171400' => 'mes', 'Manes.01G236100' => 'mes', 'Manes.02G130500' => 'mes', 'Manes.02G130600' => 'mes', 'Manes.03G180200' => 'mes', 'Manes.05G007000' => 'mes', 'Manes.08G084400' => 'mes', 'Manes.09G092600' => 'mes', 'Manes.15G027900' => 'mes', 'MBI04_g40948_MAGBIO' => 'mbi', 'MBI14_g12123_MAGBIO' => 'mbi', 'MBI18_g28915_MAGBIO' => 'mbi', 'MCO09G053' => 'mco', 'MCO11G782' => 'mco', 'MCO15G215' => 'mco', 'MD03G1088500' => 'mdo', 'MD03G1088600' => 'mdo', 'MD04G1130800' => 'mdo', 'MD09G1291700' => 'mdo', 'MD11G1097500' => 'mdo', 'MD11G1097600' => 'mdo', 'MD12G1143900' => 'mdo', 'MD13G1191400' => 'mdo', 'MD16G1191500' => 'mdo', 'Medtr1g085570' => 'mtr', 'Medtr1g104610' => 'mtr', 'Medtr2g097520' => 'mtr', 'Medtr4g021800' => 'mtr', 'Medtr4g021825' => 'mtr', 'Medtr4g064270' => 'mtr', 'Medtr4g064380' => 'mtr', 'Medtr7g062150' => 'mtr', 'MELO3C003138.2' => 'cme', 'MELO3C005187.2' => 'cme', 'MELO3C009252.2' => 'cme', 'MELO3C014481.2' => 'cme', 'MELO3C020616.2' => 'cme', 'MELO3C020617.2' => 'cme', 'MELO3C020618.2' => 'cme', 'Migut.G00328' => 'egut', 'Migut.J00320' => 'egut', 'Migut.L01000' => 'egut', 'Migut.L01953' => 'egut', 'MSTRG.10253' => 'ama', 'MSTRG.19077' => 'ama', 'MSTRG.26780' => 'ama', 'MSTRG.4023' => 'ama', 'MSTRG.5655' => 'ama', 'MSTRG.9992' => 'ama', 'Nitab4.5_0000043g0310' => 'nta', 'Nitab4.5_0000463g0080' => 'nta', 'Nitab4.5_0000705g0170' => 'nta', 'Nitab4.5_0001326g0060' => 'nta', 'Nitab4.5_0001628g0030' => 'nta', 'Nitab4.5_0002103g0110' => 'nta', 'Nitab4.5_0002946g0030' => 'nta', 'Nitab4.5_0004639g0030' => 'nta', 'Nn2g11149' => 'nnu', 'Nn2g13389' => 'nnu', 'Nn4g25326' => 'nnu', 'Nn4g26290' => 'nnu', 'Nn5g29865' => 'nnu', 'Oeu004163.1' => 'oeu', 'Oeu006901.1' => 'oeu', 'Oeu010096.1' => 'oeu', 'Oeu024340.1' => 'oeu', 'Oeu048369.1' => 'oeu', 'Os01g0973000' => 'osa', 'Os03g0273800' => 'osa', 'Os03g0701200' => 'osa', 'Os03g0834050' => 'osa', 'Os07g0634400' => 'osa', 'Peaxi162Scf00092g01414' => 'pax', 'Peaxi162Scf00165g00818' => 'pax', 'Peaxi162Scf00309g00516' => 'pax', 'Peaxi162Scf00774g00218' => 'pax', 'PGR004G1824' => 'pgr', 'PGR004G2606' => 'pgr', 'PGR031G2716' => 'pgr', 'PGR102G2460' => 'pgr', 'PGR142G2599' => 'pgr', 'PGSC0003DMG400000843' => 'stu', 'PGSC0003DMG400008829' => 'stu', 'PGSC0003DMG400030418' => 'stu', 'PGSC0003DMG400031834' => 'stu', 'PGSC0003DMG401028300' => 'stu', 'PGSC0003DMG402028300' => 'stu', 'Phvul.001G219300' => 'pvu', 'Phvul.007G056000' => 'pvu', 'Phvul.007G208000' => 'pvu', 'Phvul.008G119500' => 'pvu', 'Phvul.010G011200' => 'pvu', 'Phvul.010G014800' => 'pvu', 'Phvul.011G062900' => 'pvu', 'Phvul.L007043' => 'pvu', 'Potri.001G242300' => 'ptr', 'Potri.002G185300' => 'ptr', 'Potri.006G086900' => 'ptr', 'Potri.008G151700' => 'ptr', 'Potri.009G033500' => 'ptr', 'Potri.010G089300' => 'ptr', 'Potri.014G110800' => 'ptr', 'Pp3c27_8130' => 'ppa', 'Pp3c6_27410' => 'ppa', 'PRCOL_00001659' => 'pco', 'PRCOL_00001927' => 'pco', 'PRCOL_00003649' => 'pco', 'Prupe.1G011600' => 'ppe', 'Prupe.3G000800' => 'ppe', 'Prupe.3G001100' => 'ppe', 'Prupe.6G072700' => 'ppe', 'Prupe.6G072800' => 'ppe', 'Prupe.6G257300' => 'ppe', 'Prupe.8G033000' => 'ppe', 'Psat0s2633g0080' => 'psa', 'Psat0s3396g0080' => 'psa', 'Psat0s3396g0200' => 'psa', 'Psat3g139080' => 'psa', 'Psat5g285080' => 'psa', 'Psat6g157760' => 'psa', 'Psat6g208440' => 'psa', 'Psat7g215320' => 'psa', 'Psat7g215400' => 'psa', 'Psat7g235600' => 'psa', 'Psat7g235760' => 'psa', 'PSO063G4603' => 'pso', 'PSO210G0182' => 'pso', 'PSO210G0196' => 'pso', 'PSO339G0394' => 'pso', 'PSO339G4127' => 'pso', 'PSO513G0064' => 'pso', 'PSO761G0079' => 'pso', 'QL01p031003' => 'qlo', 'QL01p031078' => 'qlo', 'QL06p003004' => 'qlo', 'QL07p048731' => 'qlo', 'QL09p037427' => 'qlo', 'RcHm_v2.0_Chr3g0466361' => 'rch', 'RcHm_v2.0_Chr3g0485571' => 'rch', 'RcHm_v2.0_Chr4g0416551' => 'rch', 'RcHm_v2.0_Chr5g0065831' => 'rch', 'Rhsim01G0230500' => 'rsi', 'Rhsim05G0194000' => 'rsi', 'Rhsim08G0250400' => 'rsi', 'Sabra02G0131000' => 'sbr', 'Sabra06G0066300' => 'sbr', 'Sabra08G0115500' => 'sbr', 'Sabra09G0023900' => 'sbr', 'Sabra10G0054000' => 'sbr', 'Sabra14G0081500' => 'sbr', 'Sabra16G0147100' => 'sbr', 'SalBow2G2957' => 'sbo', 'SalBow4G3320' => 'sbo', 'SalBow8G1894' => 'sbo', 'Sc07g0007950' => 'sci', 'Sc12g0001360' => 'sci', 'Sc13g0004330' => 'sci', 'Sc20g0005010' => 'sci', 'Sed0000361' => 'sed', 'Sed0001706' => 'sed', 'Sed0002422' => 'sed', 'Sed0004029' => 'sed', 'Sed0004602' => 'sed', 'Sed0004943' => 'sed', 'Sed0008646' => 'sed', 'Sed0023313' => 'sed', 'Sed0024843' => 'sed', 'SEGI_00081' => 'sgi', 'SEGI_00947' => 'sgi', 'SEGI_04046' => 'sgi', 'SEGI_06880' => 'sgi', 'SEGI_09736' => 'sgi', 'SEGI_12741' => 'sgi', 'SEGI_14530' => 'sgi', 'SEGI_20705' => 'sgi', 'SEGI_26088' => 'sgi', 'SEGI_28323' => 'sgi', 'SEGI_33343' => 'sgi', 'SGA_v2.0_scaffold126G33775' => 'sas', 'SGA_v2.0_scaffold2G01337' => 'sas', 'SGA_v2.0_scaffold38G15006' => 'sas', 'SGA_v2.0_scaffold39G15264' => 'sas', 'SGA_v2.0_scaffold453G51880' => 'sas', 'SHI12696' => 'shi', 'SMO367G1096' => 'smo', 'Solyc01g068630.3' => 'sly', 'Solyc05g011880.3' => 'sly', 'Solyc06g076300.3' => 'sly', 'Solyc09g010940.4' => 'sly', 'Solyc09g075890.3' => 'sly', 'Sopen01g030560' => 'spe', 'Sopen05g006630' => 'spe', 'Sopen06g032720' => 'spe', 'Sopen09g005660' => 'spe', 'Sopen09g030690' => 'spe', 'Sp4g14540' => 'spa', 'Sp4g20030' => 'spa', 'Sp5g01320' => 'spa', 'Sp6g21170' => 'spa', 'Sp6g21180' => 'spa', 'Sp6g21190' => 'spa', 'Sp6g40220' => 'spa', 'TAR362G0122' => 'tar', 'TAR362G1338' => 'tar', 'TAR369G0590' => 'tar', 'TAR371G0824' => 'tar', 'TAR622G1429' => 'tar', 'TAR623G0734' => 'tar', 'TAR625G0441' => 'tar', 'TAR629G0976' => 'tar', 'TAR633G1195' => 'tar', 'TAR636G2660' => 'tar', 'THA.LOC104799440' => 'tha', 'THA.LOC104800966' => 'tha', 'THA.LOC104806559' => 'tha', 'THA.LOC104810765' => 'tha', 'THA.LOC104816266' => 'tha', 'THA.LOC104817419' => 'tha', 'THA.LOC104827021' => 'tha', 'Thecc.01G327400' => 'tca', 'Thecc.04G229200' => 'tca', 'Thecc.05G037400' => 'tca', 'Thecc.09G318600' => 'tca', 'Thecc.09G318700' => 'tca', 'Thhalv10006238m.g' => 'esa', 'Thhalv10014321m.g' => 'esa', 'Thhalv10014335m.g' => 'esa', 'Thhalv10015826m.g' => 'esa', 'Thhalv10017107m.g' => 'esa', 'Thhalv10017180m.g' => 'esa', 'Thhalv10029339m.g' => 'esa', 'TPR.G1699' => 'tpr', 'TPR.G23609' => 'tpr', 'TPR.G3081' => 'tpr', 'TPR.G40397' => 'tpr', 'TPR.G5522' => 'tpr', 'TPR.G5618' => 'tpr', 'TPR.G5626' => 'tpr', 'TWI09G1632' => 'twi', 'TWI23G1230' => 'twi', 'TWI53G1064' => 'twi', 'TWI59G0751' => 'twi', 'TWI74G0947' => 'twi', 'TWI77G0337' => 'twi', 'TWI79G1254' => 'twi', 'unitig_0.g2341' => 'ugi', 'unitig_26.g10006' => 'ugi', 'unitig_26.g10008' => 'ugi', 'unitig_26.g9192' => 'ugi', 'vmacro14547' => 'vma', 'vmacro15333' => 'vma', 'vmacro18743' => 'vma', 'vmacro20166' => 'vma', 'VMungo0331G0523' => 'vmu', 'VMungo0331G1202' => 'vmu', 'VMungo0720G1228' => 'vmu', 'VMungo0720G1514' => 'vmu', 'VMungo1080G0169' => 'vmu', 'VMungo1127G1475' => 'vmu', 'VMungo1383G1208' => 'vmu', 'VMungo1383G1698' => 'vmu', 'Zm00001eb012270' => 'zma', 'Zm00001eb054100' => 'zma', 'Zm00001eb063350' => 'zma', 'Zm00001eb328560' => 'zma', 'Zm00001eb342820' => 'zma', 'Zm00001eb362210' => 'zma', 'Zm00001eb397730' => 'zma', 'Zm00001eb399750' => 'zma' ), 'gf_id' => 'HOM05D000959', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000959' ), 'data_identifier' => 'HOM05D000959', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000959', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '622', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p07100' => 'bna', 'A03p11720' => 'bna', 'A05p08300' => 'bna', 'A05p13380' => 'bna', 'A09p54130' => 'bna', 'A10p16690' => 'bna', 'A10p16700' => 'bna', 'A10p33390' => 'bna', 'Aa31LG10G16020' => 'aar', 'Aa31LG1G11810' => 'aar', 'Aa31LG1G11830' => 'aar', 'Aa31LG1G22510' => 'aar', 'Aa31LG5G4890' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5793' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2310' => 'aag', 'Actinidia08499' => 'ach', 'Actinidia11262' => 'ach', 'Actinidia23926' => 'ach', 'Actinidia34420' => 'ach', 'Actinidia36970' => 'ach', 'Ah.02g111220' => 'amhyb', 'Ah.15g097750' => 'amhyb', 'AL4G27500' => 'aly', 'AL6G11470' => 'aly', 'AL8G35950' => 'aly', 'AL8G35960' => 'aly', 'AL8G35970' => 'aly', 'Aqoxy1G00912' => 'aox', 'Aqoxy2G02253' => 'aox', 'Aqoxy2G02411' => 'aox', 'Aqoxy5G00485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BZ66YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K8ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM4FUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6BF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HFV7XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25JBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0YNNV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MAKK6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P70IT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP2Z6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V61LZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YWP64R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3S9AI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7PGHH' => 'arhy', 'AT2G32150' => 'ath', 'AT3G62040' => 'ath', 'AT5G02230' => 'ath', 'AT5G59480' => 'ath', 'AT5G59490' => 'ath', 'ATR0332G060' => 'atr', 'ATR0559G190' => 'atr', 'ATR0693G294' => 'atr', 'Atru.chr3.3975' => 'acertr', 'Atru.chr3.3976' => 'acertr', 'Atru.chr3.3977' => 'acertr', 'Atru.chr4.2498' => 'acertr', 'Atru.chr5.838' => 'acertr', 'Atru.chr8.1990' => 'acertr', 'Atru.chr8.1991' => 'acertr', 'Atru.chr8.1992' => 'acertr', 'AUR62001759' => 'cqu', 'AUR62009545' => 'cqu', 'AUR62010474' => 'cqu', 'AUR62025820' => 'cqu', 'AUR62030422' => 'cqu', 'AUR62033605' => 'cqu', 'AUR62038615' => 'cqu', 'AUR62041347' => 'cqu', 'BcaB01g04574' => 'bca', 'BcaB02g09263' => 'bca', 'BcaB02g10453' => 'bca', 'BcaB05g22513' => 'bca', 'BcaB08g36253' => 'bca', 'BcaB08g36254' => 'bca', 'BcaC01g06519' => 'bca', 'BcaC02g11889' => 'bca', 'BcaC03g14010' => 'bca', 'BcaC03g18439' => 'bca', 'BcaC04g19765' => 'bca', 'BcaC09g48432' => 'bca', 'BcaNung07302' => 'bca', 'BolC2t06040H' => 'bol', 'BolC2t07346H' => 'bol', 'BolC3t13817H' => 'bol', 'BolC4t22625H' => 'bol', 'BolC4t23297H' => 'bol', 'BolC8t51278H' => 'bol', 'BolC9t58050H' => 'bol', 'BolC9t58051H' => 'bol', 'BolC9t60163H' => 'bol', 'BraA02t04712Z' => 'bra', 'BraA02t05791Z' => 'bra', 'BraA03t10483Z' => 'bra', 'BraA05t19795Z' => 'bra', 'BraA05t20276Z' => 'bra', 'BraA09t40827Z' => 'bra', 'BraA10t43750Z' => 'bra', 'BraA10t43751Z' => 'bra', 'BraA10t45370Z' => 'bra', 'C02p00400' => 'bna', 'C02p12460' => 'bna', 'C03p13680' => 'bna', 'C04p10270' => 'bna', 'C04p17500' => 'bna', 'C08p37010' => 'bna', 'C09p51880' => 'bna', 'C09p51890' => 'bna', 'C09p74300' => 'bna', 'CAN.G179.26' => 'can', 'CAN.G3384.1' => 'can', 'CAN.G394.68' => 'can', 'CAN.G907.13' => 'can', 'CANSAT11G0012' => 'cansat', 'CANSAT25G1586' => 'cansat', 'CANSAT35G0735' => 'cansat', 'CANSAT54G0556' => 'cansat', 'CANSAT64G0356' => 'cansat', 'CANSAT78G2042' => 'cansat', 'CARHR125920' => 'chi', 'CARHR131910' => 'chi', 'CARHR172390' => 'chi', 'CARHR211140' => 'chi', 'CARHR285850' => 'chi', 'CARHR285860' => 'chi', 'Carub.0004s1347' => 'cru', 'Carub.0004s1960' => 'cru', 'Carub.0005s2880' => 'cru', 'Carub.0006s0107' => 'cru', 'Carub.0008s2015' => 'cru', 'Carub.0008s2016' => 'cru', 'Carub.0008s2017' => 'cru', 'Ca_01315_v3' => 'car', 'Ca_05063_v3' => 'car', 'Ca_10231_v3' => 'car', 'Ca_10913_v3' => 'car', 'Ca_19156_v3' => 'car', 'Ca_23644_v3' => 'car', 'Ca_26735_v3' => 'car', 'Cc01_g13130' => 'ccan', 'Cc02_g21690' => 'ccan', 'Cc03_g03600' => 'ccan', 'Cc06_g02510' => 'ccan', 'CDE02G1265' => 'cde', 'CDE05G0415' => 'cde', 'CDE08G1082' => 'cde', 'Cfa005780' => 'cfa', 'Cfa011522' => 'cfa', 'Cfa011523' => 'cfa', 'Cfa015627' => 'cfa', 'Cfa017359' => 'cfa', 'Ciclev10005687m.g' => 'ccl', 'Ciclev10012173m.g' => 'ccl', 'Ciclev10021621m.g' => 'ccl', 'Ciclev10028968m.g' => 'ccl', 'Ciclev10029907m.g' => 'ccl', 'CiPaw.01G164800' => 'cil', 'CiPaw.07G083700' => 'cil', 'CiPaw.07G127000' => 'cil', 'CiPaw.07G136900' => 'cil', 'CiPaw.08G081700' => 'cil', 'CiPaw.09G194600' => 'cil', 'CiPaw.10G146500' => 'cil', 'CiPaw.13G091500' => 'cil', 'CiPaw.13G091600' => 'cil', 'ClCG00G003390' => 'cla', 'ClCG01G007220' => 'cla', 'ClCG03G001370' => 'cla', 'ClCG04G008100' => 'cla', 'ClCG06G006110' => 'cla', 'ClCG06G006130' => 'cla', 'ClCG10G021210' => 'cla', 'COL.COLO4_07648' => 'col', 'COL.COLO4_07650' => 'col', 'COL.COLO4_07651' => 'col', 'COL.COLO4_14780' => 'col', 'COL.COLO4_18546' => 'col', 'COL.COLO4_18547' => 'col', 'COL.COLO4_23103' => 'col', 'COL.COLO4_30419' => 'col', 'COL.COLO4_34232' => 'col', 'Cpa.g.sc169.20' => 'cpa', 'Cpa.g.sc57.45' => 'cpa', 'Cpa.g.sc58.124' => 'cpa', 'Cpa.g.sc58.125' => 'cpa', 'Cpa.g.sc81.118' => 'cpa', 'Cpa.g.sc81.119' => 'cpa', 'Cre12.g524700' => 'cre', 'CsaV3_1G034430' => 'csa', 'CsaV3_1G034440' => 'csa', 'CsaV3_1G034450' => 'csa', 'CsaV3_3G034830' => 'csa', 'CsaV3_4G025090' => 'csa', 'CsaV3_5G018660' => 'csa', 'CsaV3_6G038160' => 'csa', 'CSS0003447' => 'camsi', 'CSS0017840' => 'camsi', 'CSS0019260' => 'camsi', 'CSS0040375' => 'camsi', 'CSS0042533' => 'camsi', 'DCAR_005960' => 'dca', 'DCAR_012104' => 'dca', 'DCAR_012105' => 'dca', 'DCAR_012293' => 'dca', 'DCAR_015632' => 'dca', 'DCAR_024602' => 'dca', 'DCAR_028752' => 'dca', 'Dinv06261' => 'din', 'Dinv13982' => 'din', 'Dinv17029' => 'din', 'Dinv18463' => 'din', 'Dinv33181' => 'din', 'Dinv35585' => 'din', 'Dinv37161' => 'din', 'Dinv42977' => 'din', 'Dinv43122' => 'din', 'Dinv44517' => 'din', 'Duzib093G0256' => 'dzi', 'Duzib106G1254' => 'dzi', 'Duzib128G1789' => 'dzi', 'Duzib133G0633' => 'dzi', 'Duzib138G0510' => 'dzi', 'Duzib150G1084' => 'dzi', 'Duzib168G0488' => 'dzi', 'Duzib168G1523' => 'dzi', 'Duzib170G0133' => 'dzi', 'ECA234G1433' => 'eca', 'ECA236G1432' => 'eca', 'ECA236G2256' => 'eca', 'ECA236G2365' => 'eca', 'ECA236G4830' => 'eca', 'ECA248G1505' => 'eca', 'EL10Ac3g06431' => 'bvu', 'EL10Ac5g12577' => 'bvu', 'EL10Ac6g13533' => 'bvu', 'EL10Ac7g16045' => 'bvu', 'Eucgr.A01281' => 'egr', 'Eucgr.B02326' => 'egr', 'Eucgr.H03532' => 'egr', 'Eucgr.K00553' => 'egr', 'Eucgr.K03116' => 'egr', 'FAN02G3963' => 'fan', 'FAN05G0438' => 'fan', 'FAN09G2434' => 'fan', 'FAN12G3984' => 'fan', 'FAN14G0798' => 'fan', 'FAN17G0652' => 'fan', 'FAN19G1988' => 'fan', 'FAN22G0632' => 'fan', 'FAN23G0387' => 'fan', 'FAN26G1323' => 'fan', 'FAN28G0666' => 'fan', 'FvH4_1g26080' => 'fve', 'FvH4_3g36780' => 'fve', 'FvH4_4g15270' => 'fve', 'FvH4_6g13490' => 'fve', 'Glyma.01G098700' => 'gma', 'Glyma.03G065900' => 'gma', 'Glyma.03G073754' => 'gma', 'Glyma.03G073758' => 'gma', 'Glyma.03G083200' => 'gma', 'Glyma.03G225500' => 'gma', 'Glyma.05G037766' => 'gma', 'Glyma.07G133500' => 'gma', 'Glyma.10G139400' => 'gma', 'Glyma.10G248900' => 'gma', 'Glyma.11G137800' => 'gma', 'Glyma.12G061300' => 'gma', 'Glyma.13G337900' => 'gma', 'Glyma.15G036600' => 'gma', 'Glyma.18G182800' => 'gma', 'Glyma.19G222500' => 'gma', 'Glyma.20G144800' => 'gma', 'Gohir.A01G222000' => 'ghi', 'Gohir.A03G044000' => 'ghi', 'Gohir.A03G044100' => 'ghi', 'Gohir.A04G083100' => 'ghi', 'Gohir.A07G127200' => 'ghi', 'Gohir.A07G132400' => 'ghi', 'Gohir.A08G000700' => 'ghi', 'Gohir.A11G327300' => 'ghi', 'Gohir.D01G211500' => 'ghi', 'Gohir.D03G123400' => 'ghi', 'Gohir.D03G123500' => 'ghi', 'Gohir.D04G121800' => 'ghi', 'Gohir.D07G131500' => 'ghi', 'Gohir.D07G136600' => 'ghi', 'Gohir.D08G011600' => 'ghi', 'Gohir.D11G346200' => 'ghi', 'Gorai.001G142800' => 'gra', 'Gorai.001G148700' => 'gra', 'Gorai.002G257300' => 'gra', 'Gorai.003G130000' => 'gra', 'Gorai.003G130100' => 'gra', 'Gorai.004G005300' => 'gra', 'Gorai.007G376500' => 'gra', 'Gorai.012G104700' => 'gra', 'GSVIVG01017946001' => 'vvi', 'GSVIVG01024928001' => 'vvi', 'GSVIVG01028227001' => 'vvi', 'GSVIVG01034151001' => 'vvi', 'HanXRQChr05g0135031' => 'han', 'HanXRQChr05g0135041' => 'han', 'HanXRQChr05g0140021' => 'han', 'HanXRQChr06g0178981' => 'han', 'HanXRQChr07g0188251' => 'han', 'HanXRQChr08g0235311' => 'han', 'HanXRQChr09g0271011' => 'han', 'HanXRQChr10g0293321' => 'han', 'HanXRQChr13g0388171' => 'han', 'Haze_00916' => 'cav', 'Haze_05063' => 'cav', 'Haze_20814' => 'cav', 'Haze_24128' => 'cav', 'Hma1.2p1_0745F.1_g212010' => 'hma', 'Hma1.2p1_0757F.1_g213260' => 'hma', 'Hma1.2p1_0936F.1_g238840' => 'hma', 'Hma1.2p1_1735F.1_g299890' => 'hma', 'Hma1.2p1_1861F.1_g305685' => 'hma', 'HPP92_003397' => 'vpl', 'HPP92_012597' => 'vpl', 'HPP92_015520' => 'vpl', 'HPP92_015539' => 'vpl', 'HPP92_020373' => 'vpl', 'Hund04938' => 'sun', 'Hund10677' => 'sun', 'Hund11033' => 'sun', 'Hund12155' => 'sun', 'Lalb_Chr01g0022551' => 'lal', 'Lalb_Chr03g0042341' => 'lal', 'Lalb_Chr07g0192931' => 'lal', 'Lalb_Chr12g0209551' => 'lal', 'Lalb_Chr19g0125251' => 'lal', 'Lalb_Chr19g0137891' => 'lal', 'Lalb_Chr21g0304641' => 'lal', 'Lalb_Chr21g0309881' => 'lal', 'Lj1A5T12' => 'lonja', 'Lj1C148G10' => 'lonja', 'Lj2A93T83' => 'lonja', 'Lj3A738G68' => 'lonja', 'Lj3C966T1' => 'lonja', 'Lj3g0018958' => 'lja', 'Lj3g0021831' => 'lja', 'Lj3g0025443' => 'lja', 'Lj4g0026809' => 'lja', 'Lj5g0012558' => 'lja', 'Lj5g0021586' => 'lja', 'Lsat_1_v5_gn_5_156840' => 'lsa', 'Lsat_1_v5_gn_8_73460' => 'lsa', 'Lsat_1_v5_gn_8_73481' => 'lsa', 'Lsat_1_v5_gn_9_31601' => 'lsa', 'Lsat_1_v5_gn_9_77320' => 'lsa', 'Manes.01G171300' => 'mes', 'Manes.01G171400' => 'mes', 'Manes.01G236100' => 'mes', 'Manes.02G130500' => 'mes', 'Manes.02G130600' => 'mes', 'Manes.03G180200' => 'mes', 'Manes.05G007000' => 'mes', 'Manes.08G084400' => 'mes', 'Manes.09G092600' => 'mes', 'Manes.15G027900' => 'mes', 'MBI04_g40948_MAGBIO' => 'mbi', 'MBI14_g12123_MAGBIO' => 'mbi', 'MBI18_g28915_MAGBIO' => 'mbi', 'MCO09G053' => 'mco', 'MCO11G782' => 'mco', 'MCO15G215' => 'mco', 'MD03G1088500' => 'mdo', 'MD03G1088600' => 'mdo', 'MD04G1130800' => 'mdo', 'MD09G1291700' => 'mdo', 'MD11G1097500' => 'mdo', 'MD11G1097600' => 'mdo', 'MD12G1143900' => 'mdo', 'MD13G1191400' => 'mdo', 'MD16G1191500' => 'mdo', 'Medtr1g085570' => 'mtr', 'Medtr1g104610' => 'mtr', 'Medtr2g097520' => 'mtr', 'Medtr4g021800' => 'mtr', 'Medtr4g021825' => 'mtr', 'Medtr4g064270' => 'mtr', 'Medtr4g064380' => 'mtr', 'Medtr7g062150' => 'mtr', 'MELO3C003138.2' => 'cme', 'MELO3C005187.2' => 'cme', 'MELO3C009252.2' => 'cme', 'MELO3C014481.2' => 'cme', 'MELO3C020616.2' => 'cme', 'MELO3C020617.2' => 'cme', 'MELO3C020618.2' => 'cme', 'Migut.G00328' => 'egut', 'Migut.J00320' => 'egut', 'Migut.L01000' => 'egut', 'Migut.L01953' => 'egut', 'MSTRG.10253' => 'ama', 'MSTRG.19077' => 'ama', 'MSTRG.26780' => 'ama', 'MSTRG.4023' => 'ama', 'MSTRG.5655' => 'ama', 'MSTRG.9992' => 'ama', 'Nitab4.5_0000043g0310' => 'nta', 'Nitab4.5_0000463g0080' => 'nta', 'Nitab4.5_0000705g0170' => 'nta', 'Nitab4.5_0001326g0060' => 'nta', 'Nitab4.5_0001628g0030' => 'nta', 'Nitab4.5_0002103g0110' => 'nta', 'Nitab4.5_0002946g0030' => 'nta', 'Nitab4.5_0004639g0030' => 'nta', 'Nn2g11149' => 'nnu', 'Nn2g13389' => 'nnu', 'Nn4g25326' => 'nnu', 'Nn4g26290' => 'nnu', 'Nn5g29865' => 'nnu', 'Oeu004163.1' => 'oeu', 'Oeu006901.1' => 'oeu', 'Oeu010096.1' => 'oeu', 'Oeu024340.1' => 'oeu', 'Oeu048369.1' => 'oeu', 'Os01g0973000' => 'osa', 'Os03g0273800' => 'osa', 'Os03g0701200' => 'osa', 'Os03g0834050' => 'osa', 'Os07g0634400' => 'osa', 'Peaxi162Scf00092g01414' => 'pax', 'Peaxi162Scf00165g00818' => 'pax', 'Peaxi162Scf00309g00516' => 'pax', 'Peaxi162Scf00774g00218' => 'pax', 'PGR004G1824' => 'pgr', 'PGR004G2606' => 'pgr', 'PGR031G2716' => 'pgr', 'PGR102G2460' => 'pgr', 'PGR142G2599' => 'pgr', 'PGSC0003DMG400000843' => 'stu', 'PGSC0003DMG400008829' => 'stu', 'PGSC0003DMG400030418' => 'stu', 'PGSC0003DMG400031834' => 'stu', 'PGSC0003DMG401028300' => 'stu', 'PGSC0003DMG402028300' => 'stu', 'Phvul.001G219300' => 'pvu', 'Phvul.007G056000' => 'pvu', 'Phvul.007G208000' => 'pvu', 'Phvul.008G119500' => 'pvu', 'Phvul.010G011200' => 'pvu', 'Phvul.010G014800' => 'pvu', 'Phvul.011G062900' => 'pvu', 'Phvul.L007043' => 'pvu', 'Potri.001G242300' => 'ptr', 'Potri.002G185300' => 'ptr', 'Potri.006G086900' => 'ptr', 'Potri.008G151700' => 'ptr', 'Potri.009G033500' => 'ptr', 'Potri.010G089300' => 'ptr', 'Potri.014G110800' => 'ptr', 'Pp3c27_8130' => 'ppa', 'Pp3c6_27410' => 'ppa', 'PRCOL_00001659' => 'pco', 'PRCOL_00001927' => 'pco', 'PRCOL_00003649' => 'pco', 'Prupe.1G011600' => 'ppe', 'Prupe.3G000800' => 'ppe', 'Prupe.3G001100' => 'ppe', 'Prupe.6G072700' => 'ppe', 'Prupe.6G072800' => 'ppe', 'Prupe.6G257300' => 'ppe', 'Prupe.8G033000' => 'ppe', 'Psat0s2633g0080' => 'psa', 'Psat0s3396g0080' => 'psa', 'Psat0s3396g0200' => 'psa', 'Psat3g139080' => 'psa', 'Psat5g285080' => 'psa', 'Psat6g157760' => 'psa', 'Psat6g208440' => 'psa', 'Psat7g215320' => 'psa', 'Psat7g215400' => 'psa', 'Psat7g235600' => 'psa', 'Psat7g235760' => 'psa', 'PSO063G4603' => 'pso', 'PSO210G0182' => 'pso', 'PSO210G0196' => 'pso', 'PSO339G0394' => 'pso', 'PSO339G4127' => 'pso', 'PSO513G0064' => 'pso', 'PSO761G0079' => 'pso', 'QL01p031003' => 'qlo', 'QL01p031078' => 'qlo', 'QL06p003004' => 'qlo', 'QL07p048731' => 'qlo', 'QL09p037427' => 'qlo', 'RcHm_v2.0_Chr3g0466361' => 'rch', 'RcHm_v2.0_Chr3g0485571' => 'rch', 'RcHm_v2.0_Chr4g0416551' => 'rch', 'RcHm_v2.0_Chr5g0065831' => 'rch', 'Rhsim01G0230500' => 'rsi', 'Rhsim05G0194000' => 'rsi', 'Rhsim08G0250400' => 'rsi', 'Sabra02G0131000' => 'sbr', 'Sabra06G0066300' => 'sbr', 'Sabra08G0115500' => 'sbr', 'Sabra09G0023900' => 'sbr', 'Sabra10G0054000' => 'sbr', 'Sabra14G0081500' => 'sbr', 'Sabra16G0147100' => 'sbr', 'SalBow2G2957' => 'sbo', 'SalBow4G3320' => 'sbo', 'SalBow8G1894' => 'sbo', 'Sc07g0007950' => 'sci', 'Sc12g0001360' => 'sci', 'Sc13g0004330' => 'sci', 'Sc20g0005010' => 'sci', 'Sed0000361' => 'sed', 'Sed0001706' => 'sed', 'Sed0002422' => 'sed', 'Sed0004029' => 'sed', 'Sed0004602' => 'sed', 'Sed0004943' => 'sed', 'Sed0008646' => 'sed', 'Sed0023313' => 'sed', 'Sed0024843' => 'sed', 'SEGI_00081' => 'sgi', 'SEGI_00947' => 'sgi', 'SEGI_04046' => 'sgi', 'SEGI_06880' => 'sgi', 'SEGI_09736' => 'sgi', 'SEGI_12741' => 'sgi', 'SEGI_14530' => 'sgi', 'SEGI_20705' => 'sgi', 'SEGI_26088' => 'sgi', 'SEGI_28323' => 'sgi', 'SEGI_33343' => 'sgi', 'SGA_v2.0_scaffold126G33775' => 'sas', 'SGA_v2.0_scaffold2G01337' => 'sas', 'SGA_v2.0_scaffold38G15006' => 'sas', 'SGA_v2.0_scaffold39G15264' => 'sas', 'SGA_v2.0_scaffold453G51880' => 'sas', 'SHI12696' => 'shi', 'SMO367G1096' => 'smo', 'Solyc01g068630.3' => 'sly', 'Solyc05g011880.3' => 'sly', 'Solyc06g076300.3' => 'sly', 'Solyc09g010940.4' => 'sly', 'Solyc09g075890.3' => 'sly', 'Sopen01g030560' => 'spe', 'Sopen05g006630' => 'spe', 'Sopen06g032720' => 'spe', 'Sopen09g005660' => 'spe', 'Sopen09g030690' => 'spe', 'Sp4g14540' => 'spa', 'Sp4g20030' => 'spa', 'Sp5g01320' => 'spa', 'Sp6g21170' => 'spa', 'Sp6g21180' => 'spa', 'Sp6g21190' => 'spa', 'Sp6g40220' => 'spa', 'TAR362G0122' => 'tar', 'TAR362G1338' => 'tar', 'TAR369G0590' => 'tar', 'TAR371G0824' => 'tar', 'TAR622G1429' => 'tar', 'TAR623G0734' => 'tar', 'TAR625G0441' => 'tar', 'TAR629G0976' => 'tar', 'TAR633G1195' => 'tar', 'TAR636G2660' => 'tar', 'THA.LOC104799440' => 'tha', 'THA.LOC104800966' => 'tha', 'THA.LOC104806559' => 'tha', 'THA.LOC104810765' => 'tha', 'THA.LOC104816266' => 'tha', 'THA.LOC104817419' => 'tha', 'THA.LOC104827021' => 'tha', 'Thecc.01G327400' => 'tca', 'Thecc.04G229200' => 'tca', 'Thecc.05G037400' => 'tca', 'Thecc.09G318600' => 'tca', 'Thecc.09G318700' => 'tca', 'Thhalv10006238m.g' => 'esa', 'Thhalv10014321m.g' => 'esa', 'Thhalv10014335m.g' => 'esa', 'Thhalv10015826m.g' => 'esa', 'Thhalv10017107m.g' => 'esa', 'Thhalv10017180m.g' => 'esa', 'Thhalv10029339m.g' => 'esa', 'TPR.G1699' => 'tpr', 'TPR.G23609' => 'tpr', 'TPR.G3081' => 'tpr', 'TPR.G40397' => 'tpr', 'TPR.G5522' => 'tpr', 'TPR.G5618' => 'tpr', 'TPR.G5626' => 'tpr', 'TWI09G1632' => 'twi', 'TWI23G1230' => 'twi', 'TWI53G1064' => 'twi', 'TWI59G0751' => 'twi', 'TWI74G0947' => 'twi', 'TWI77G0337' => 'twi', 'TWI79G1254' => 'twi', 'unitig_0.g2341' => 'ugi', 'unitig_26.g10006' => 'ugi', 'unitig_26.g10008' => 'ugi', 'unitig_26.g9192' => 'ugi', 'vmacro14547' => 'vma', 'vmacro15333' => 'vma', 'vmacro18743' => 'vma', 'vmacro20166' => 'vma', 'VMungo0331G0523' => 'vmu', 'VMungo0331G1202' => 'vmu', 'VMungo0720G1228' => 'vmu', 'VMungo0720G1514' => 'vmu', 'VMungo1080G0169' => 'vmu', 'VMungo1127G1475' => 'vmu', 'VMungo1383G1208' => 'vmu', 'VMungo1383G1698' => 'vmu', 'Zm00001eb012270' => 'zma', 'Zm00001eb054100' => 'zma', 'Zm00001eb063350' => 'zma', 'Zm00001eb328560' => 'zma', 'Zm00001eb342820' => 'zma', 'Zm00001eb362210' => 'zma', 'Zm00001eb397730' => 'zma', 'Zm00001eb399750' => 'zma' ) $gf_id = 'HOM05D000959' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000959' ) $data_identifier = 'HOM05D000959' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 5, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 5, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 10, 'mbi' => (int) 3, 'mco' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 2, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 3, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 11, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399750' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000959', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '622', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p07100' => 'bna', 'A03p11720' => 'bna', 'A05p08300' => 'bna', 'A05p13380' => 'bna', 'A09p54130' => 'bna', 'A10p16690' => 'bna', 'A10p16700' => 'bna', 'A10p33390' => 'bna', 'Aa31LG10G16020' => 'aar', 'Aa31LG1G11810' => 'aar', 'Aa31LG1G11830' => 'aar', 'Aa31LG1G22510' => 'aar', 'Aa31LG5G4890' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5793' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2310' => 'aag', 'Actinidia08499' => 'ach', 'Actinidia11262' => 'ach', 'Actinidia23926' => 'ach', 'Actinidia34420' => 'ach', 'Actinidia36970' => 'ach', 'Ah.02g111220' => 'amhyb', 'Ah.15g097750' => 'amhyb', 'AL4G27500' => 'aly', 'AL6G11470' => 'aly', 'AL8G35950' => 'aly', 'AL8G35960' => 'aly', 'AL8G35970' => 'aly', 'Aqoxy1G00912' => 'aox', 'Aqoxy2G02253' => 'aox', 'Aqoxy2G02411' => 'aox', 'Aqoxy5G00485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BZ66YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K8ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM4FUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6BF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HFV7XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25JBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0YNNV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MAKK6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P70IT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP2Z6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V61LZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YWP64R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3S9AI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7PGHH' => 'arhy', 'AT2G32150' => 'ath', 'AT3G62040' => 'ath', 'AT5G02230' => 'ath', 'AT5G59480' => 'ath', 'AT5G59490' => 'ath', 'ATR0332G060' => 'atr', 'ATR0559G190' => 'atr', 'ATR0693G294' => 'atr', 'Atru.chr3.3975' => 'acertr', 'Atru.chr3.3976' => 'acertr', 'Atru.chr3.3977' => 'acertr', 'Atru.chr4.2498' => 'acertr', 'Atru.chr5.838' => 'acertr', 'Atru.chr8.1990' => 'acertr', 'Atru.chr8.1991' => 'acertr', 'Atru.chr8.1992' => 'acertr', 'AUR62001759' => 'cqu', 'AUR62009545' => 'cqu', 'AUR62010474' => 'cqu', 'AUR62025820' => 'cqu', 'AUR62030422' => 'cqu', 'AUR62033605' => 'cqu', 'AUR62038615' => 'cqu', 'AUR62041347' => 'cqu', 'BcaB01g04574' => 'bca', 'BcaB02g09263' => 'bca', 'BcaB02g10453' => 'bca', 'BcaB05g22513' => 'bca', 'BcaB08g36253' => 'bca', 'BcaB08g36254' => 'bca', 'BcaC01g06519' => 'bca', 'BcaC02g11889' => 'bca', 'BcaC03g14010' => 'bca', 'BcaC03g18439' => 'bca', 'BcaC04g19765' => 'bca', 'BcaC09g48432' => 'bca', 'BcaNung07302' => 'bca', 'BolC2t06040H' => 'bol', 'BolC2t07346H' => 'bol', 'BolC3t13817H' => 'bol', 'BolC4t22625H' => 'bol', 'BolC4t23297H' => 'bol', 'BolC8t51278H' => 'bol', 'BolC9t58050H' => 'bol', 'BolC9t58051H' => 'bol', 'BolC9t60163H' => 'bol', 'BraA02t04712Z' => 'bra', 'BraA02t05791Z' => 'bra', 'BraA03t10483Z' => 'bra', 'BraA05t19795Z' => 'bra', 'BraA05t20276Z' => 'bra', 'BraA09t40827Z' => 'bra', 'BraA10t43750Z' => 'bra', 'BraA10t43751Z' => 'bra', 'BraA10t45370Z' => 'bra', 'C02p00400' => 'bna', 'C02p12460' => 'bna', 'C03p13680' => 'bna', 'C04p10270' => 'bna', 'C04p17500' => 'bna', 'C08p37010' => 'bna', 'C09p51880' => 'bna', 'C09p51890' => 'bna', 'C09p74300' => 'bna', 'CAN.G179.26' => 'can', 'CAN.G3384.1' => 'can', 'CAN.G394.68' => 'can', 'CAN.G907.13' => 'can', 'CANSAT11G0012' => 'cansat', 'CANSAT25G1586' => 'cansat', 'CANSAT35G0735' => 'cansat', 'CANSAT54G0556' => 'cansat', 'CANSAT64G0356' => 'cansat', 'CANSAT78G2042' => 'cansat', 'CARHR125920' => 'chi', 'CARHR131910' => 'chi', 'CARHR172390' => 'chi', 'CARHR211140' => 'chi', 'CARHR285850' => 'chi', 'CARHR285860' => 'chi', 'Carub.0004s1347' => 'cru', 'Carub.0004s1960' => 'cru', 'Carub.0005s2880' => 'cru', 'Carub.0006s0107' => 'cru', 'Carub.0008s2015' => 'cru', 'Carub.0008s2016' => 'cru', 'Carub.0008s2017' => 'cru', 'Ca_01315_v3' => 'car', 'Ca_05063_v3' => 'car', 'Ca_10231_v3' => 'car', 'Ca_10913_v3' => 'car', 'Ca_19156_v3' => 'car', 'Ca_23644_v3' => 'car', 'Ca_26735_v3' => 'car', 'Cc01_g13130' => 'ccan', 'Cc02_g21690' => 'ccan', 'Cc03_g03600' => 'ccan', 'Cc06_g02510' => 'ccan', 'CDE02G1265' => 'cde', 'CDE05G0415' => 'cde', 'CDE08G1082' => 'cde', 'Cfa005780' => 'cfa', 'Cfa011522' => 'cfa', 'Cfa011523' => 'cfa', 'Cfa015627' => 'cfa', 'Cfa017359' => 'cfa', 'Ciclev10005687m.g' => 'ccl', 'Ciclev10012173m.g' => 'ccl', 'Ciclev10021621m.g' => 'ccl', 'Ciclev10028968m.g' => 'ccl', 'Ciclev10029907m.g' => 'ccl', 'CiPaw.01G164800' => 'cil', 'CiPaw.07G083700' => 'cil', 'CiPaw.07G127000' => 'cil', 'CiPaw.07G136900' => 'cil', 'CiPaw.08G081700' => 'cil', 'CiPaw.09G194600' => 'cil', 'CiPaw.10G146500' => 'cil', 'CiPaw.13G091500' => 'cil', 'CiPaw.13G091600' => 'cil', 'ClCG00G003390' => 'cla', 'ClCG01G007220' => 'cla', 'ClCG03G001370' => 'cla', 'ClCG04G008100' => 'cla', 'ClCG06G006110' => 'cla', 'ClCG06G006130' => 'cla', 'ClCG10G021210' => 'cla', 'COL.COLO4_07648' => 'col', 'COL.COLO4_07650' => 'col', 'COL.COLO4_07651' => 'col', 'COL.COLO4_14780' => 'col', 'COL.COLO4_18546' => 'col', 'COL.COLO4_18547' => 'col', 'COL.COLO4_23103' => 'col', 'COL.COLO4_30419' => 'col', 'COL.COLO4_34232' => 'col', 'Cpa.g.sc169.20' => 'cpa', 'Cpa.g.sc57.45' => 'cpa', 'Cpa.g.sc58.124' => 'cpa', 'Cpa.g.sc58.125' => 'cpa', 'Cpa.g.sc81.118' => 'cpa', 'Cpa.g.sc81.119' => 'cpa', 'Cre12.g524700' => 'cre', 'CsaV3_1G034430' => 'csa', 'CsaV3_1G034440' => 'csa', 'CsaV3_1G034450' => 'csa', 'CsaV3_3G034830' => 'csa', 'CsaV3_4G025090' => 'csa', 'CsaV3_5G018660' => 'csa', 'CsaV3_6G038160' => 'csa', 'CSS0003447' => 'camsi', 'CSS0017840' => 'camsi', 'CSS0019260' => 'camsi', 'CSS0040375' => 'camsi', 'CSS0042533' => 'camsi', 'DCAR_005960' => 'dca', 'DCAR_012104' => 'dca', 'DCAR_012105' => 'dca', 'DCAR_012293' => 'dca', 'DCAR_015632' => 'dca', 'DCAR_024602' => 'dca', 'DCAR_028752' => 'dca', 'Dinv06261' => 'din', 'Dinv13982' => 'din', 'Dinv17029' => 'din', 'Dinv18463' => 'din', 'Dinv33181' => 'din', 'Dinv35585' => 'din', 'Dinv37161' => 'din', 'Dinv42977' => 'din', 'Dinv43122' => 'din', 'Dinv44517' => 'din', 'Duzib093G0256' => 'dzi', 'Duzib106G1254' => 'dzi', 'Duzib128G1789' => 'dzi', 'Duzib133G0633' => 'dzi', 'Duzib138G0510' => 'dzi', 'Duzib150G1084' => 'dzi', 'Duzib168G0488' => 'dzi', 'Duzib168G1523' => 'dzi', 'Duzib170G0133' => 'dzi', 'ECA234G1433' => 'eca', 'ECA236G1432' => 'eca', 'ECA236G2256' => 'eca', 'ECA236G2365' => 'eca', 'ECA236G4830' => 'eca', 'ECA248G1505' => 'eca', 'EL10Ac3g06431' => 'bvu', 'EL10Ac5g12577' => 'bvu', 'EL10Ac6g13533' => 'bvu', 'EL10Ac7g16045' => 'bvu', 'Eucgr.A01281' => 'egr', 'Eucgr.B02326' => 'egr', 'Eucgr.H03532' => 'egr', 'Eucgr.K00553' => 'egr', 'Eucgr.K03116' => 'egr', 'FAN02G3963' => 'fan', 'FAN05G0438' => 'fan', 'FAN09G2434' => 'fan', 'FAN12G3984' => 'fan', 'FAN14G0798' => 'fan', 'FAN17G0652' => 'fan', 'FAN19G1988' => 'fan', 'FAN22G0632' => 'fan', 'FAN23G0387' => 'fan', 'FAN26G1323' => 'fan', 'FAN28G0666' => 'fan', 'FvH4_1g26080' => 'fve', 'FvH4_3g36780' => 'fve', 'FvH4_4g15270' => 'fve', 'FvH4_6g13490' => 'fve', 'Glyma.01G098700' => 'gma', 'Glyma.03G065900' => 'gma', 'Glyma.03G073754' => 'gma', 'Glyma.03G073758' => 'gma', 'Glyma.03G083200' => 'gma', 'Glyma.03G225500' => 'gma', 'Glyma.05G037766' => 'gma', 'Glyma.07G133500' => 'gma', 'Glyma.10G139400' => 'gma', 'Glyma.10G248900' => 'gma', 'Glyma.11G137800' => 'gma', 'Glyma.12G061300' => 'gma', 'Glyma.13G337900' => 'gma', 'Glyma.15G036600' => 'gma', 'Glyma.18G182800' => 'gma', 'Glyma.19G222500' => 'gma', 'Glyma.20G144800' => 'gma', 'Gohir.A01G222000' => 'ghi', 'Gohir.A03G044000' => 'ghi', 'Gohir.A03G044100' => 'ghi', 'Gohir.A04G083100' => 'ghi', 'Gohir.A07G127200' => 'ghi', 'Gohir.A07G132400' => 'ghi', 'Gohir.A08G000700' => 'ghi', 'Gohir.A11G327300' => 'ghi', 'Gohir.D01G211500' => 'ghi', 'Gohir.D03G123400' => 'ghi', 'Gohir.D03G123500' => 'ghi', 'Gohir.D04G121800' => 'ghi', 'Gohir.D07G131500' => 'ghi', 'Gohir.D07G136600' => 'ghi', 'Gohir.D08G011600' => 'ghi', 'Gohir.D11G346200' => 'ghi', 'Gorai.001G142800' => 'gra', 'Gorai.001G148700' => 'gra', 'Gorai.002G257300' => 'gra', 'Gorai.003G130000' => 'gra', 'Gorai.003G130100' => 'gra', 'Gorai.004G005300' => 'gra', 'Gorai.007G376500' => 'gra', 'Gorai.012G104700' => 'gra', 'GSVIVG01017946001' => 'vvi', 'GSVIVG01024928001' => 'vvi', 'GSVIVG01028227001' => 'vvi', 'GSVIVG01034151001' => 'vvi', 'HanXRQChr05g0135031' => 'han', 'HanXRQChr05g0135041' => 'han', 'HanXRQChr05g0140021' => 'han', 'HanXRQChr06g0178981' => 'han', 'HanXRQChr07g0188251' => 'han', 'HanXRQChr08g0235311' => 'han', 'HanXRQChr09g0271011' => 'han', 'HanXRQChr10g0293321' => 'han', 'HanXRQChr13g0388171' => 'han', 'Haze_00916' => 'cav', 'Haze_05063' => 'cav', 'Haze_20814' => 'cav', 'Haze_24128' => 'cav', 'Hma1.2p1_0745F.1_g212010' => 'hma', 'Hma1.2p1_0757F.1_g213260' => 'hma', 'Hma1.2p1_0936F.1_g238840' => 'hma', 'Hma1.2p1_1735F.1_g299890' => 'hma', 'Hma1.2p1_1861F.1_g305685' => 'hma', 'HPP92_003397' => 'vpl', 'HPP92_012597' => 'vpl', 'HPP92_015520' => 'vpl', 'HPP92_015539' => 'vpl', 'HPP92_020373' => 'vpl', 'Hund04938' => 'sun', 'Hund10677' => 'sun', 'Hund11033' => 'sun', 'Hund12155' => 'sun', 'Lalb_Chr01g0022551' => 'lal', 'Lalb_Chr03g0042341' => 'lal', 'Lalb_Chr07g0192931' => 'lal', 'Lalb_Chr12g0209551' => 'lal', 'Lalb_Chr19g0125251' => 'lal', 'Lalb_Chr19g0137891' => 'lal', 'Lalb_Chr21g0304641' => 'lal', 'Lalb_Chr21g0309881' => 'lal', 'Lj1A5T12' => 'lonja', 'Lj1C148G10' => 'lonja', 'Lj2A93T83' => 'lonja', 'Lj3A738G68' => 'lonja', 'Lj3C966T1' => 'lonja', 'Lj3g0018958' => 'lja', 'Lj3g0021831' => 'lja', 'Lj3g0025443' => 'lja', 'Lj4g0026809' => 'lja', 'Lj5g0012558' => 'lja', 'Lj5g0021586' => 'lja', 'Lsat_1_v5_gn_5_156840' => 'lsa', 'Lsat_1_v5_gn_8_73460' => 'lsa', 'Lsat_1_v5_gn_8_73481' => 'lsa', 'Lsat_1_v5_gn_9_31601' => 'lsa', 'Lsat_1_v5_gn_9_77320' => 'lsa', 'Manes.01G171300' => 'mes', 'Manes.01G171400' => 'mes', 'Manes.01G236100' => 'mes', 'Manes.02G130500' => 'mes', 'Manes.02G130600' => 'mes', 'Manes.03G180200' => 'mes', 'Manes.05G007000' => 'mes', 'Manes.08G084400' => 'mes', 'Manes.09G092600' => 'mes', 'Manes.15G027900' => 'mes', 'MBI04_g40948_MAGBIO' => 'mbi', 'MBI14_g12123_MAGBIO' => 'mbi', 'MBI18_g28915_MAGBIO' => 'mbi', 'MCO09G053' => 'mco', 'MCO11G782' => 'mco', 'MCO15G215' => 'mco', 'MD03G1088500' => 'mdo', 'MD03G1088600' => 'mdo', 'MD04G1130800' => 'mdo', 'MD09G1291700' => 'mdo', 'MD11G1097500' => 'mdo', 'MD11G1097600' => 'mdo', 'MD12G1143900' => 'mdo', 'MD13G1191400' => 'mdo', 'MD16G1191500' => 'mdo', 'Medtr1g085570' => 'mtr', 'Medtr1g104610' => 'mtr', 'Medtr2g097520' => 'mtr', 'Medtr4g021800' => 'mtr', 'Medtr4g021825' => 'mtr', 'Medtr4g064270' => 'mtr', 'Medtr4g064380' => 'mtr', 'Medtr7g062150' => 'mtr', 'MELO3C003138.2' => 'cme', 'MELO3C005187.2' => 'cme', 'MELO3C009252.2' => 'cme', 'MELO3C014481.2' => 'cme', 'MELO3C020616.2' => 'cme', 'MELO3C020617.2' => 'cme', 'MELO3C020618.2' => 'cme', 'Migut.G00328' => 'egut', 'Migut.J00320' => 'egut', 'Migut.L01000' => 'egut', 'Migut.L01953' => 'egut', 'MSTRG.10253' => 'ama', 'MSTRG.19077' => 'ama', 'MSTRG.26780' => 'ama', 'MSTRG.4023' => 'ama', 'MSTRG.5655' => 'ama', 'MSTRG.9992' => 'ama', 'Nitab4.5_0000043g0310' => 'nta', 'Nitab4.5_0000463g0080' => 'nta', 'Nitab4.5_0000705g0170' => 'nta', 'Nitab4.5_0001326g0060' => 'nta', 'Nitab4.5_0001628g0030' => 'nta', 'Nitab4.5_0002103g0110' => 'nta', 'Nitab4.5_0002946g0030' => 'nta', 'Nitab4.5_0004639g0030' => 'nta', 'Nn2g11149' => 'nnu', 'Nn2g13389' => 'nnu', 'Nn4g25326' => 'nnu', 'Nn4g26290' => 'nnu', 'Nn5g29865' => 'nnu', 'Oeu004163.1' => 'oeu', 'Oeu006901.1' => 'oeu', 'Oeu010096.1' => 'oeu', 'Oeu024340.1' => 'oeu', 'Oeu048369.1' => 'oeu', 'Os01g0973000' => 'osa', 'Os03g0273800' => 'osa', 'Os03g0701200' => 'osa', 'Os03g0834050' => 'osa', 'Os07g0634400' => 'osa', 'Peaxi162Scf00092g01414' => 'pax', 'Peaxi162Scf00165g00818' => 'pax', 'Peaxi162Scf00309g00516' => 'pax', 'Peaxi162Scf00774g00218' => 'pax', 'PGR004G1824' => 'pgr', 'PGR004G2606' => 'pgr', 'PGR031G2716' => 'pgr', 'PGR102G2460' => 'pgr', 'PGR142G2599' => 'pgr', 'PGSC0003DMG400000843' => 'stu', 'PGSC0003DMG400008829' => 'stu', 'PGSC0003DMG400030418' => 'stu', 'PGSC0003DMG400031834' => 'stu', 'PGSC0003DMG401028300' => 'stu', 'PGSC0003DMG402028300' => 'stu', 'Phvul.001G219300' => 'pvu', 'Phvul.007G056000' => 'pvu', 'Phvul.007G208000' => 'pvu', 'Phvul.008G119500' => 'pvu', 'Phvul.010G011200' => 'pvu', 'Phvul.010G014800' => 'pvu', 'Phvul.011G062900' => 'pvu', 'Phvul.L007043' => 'pvu', 'Potri.001G242300' => 'ptr', 'Potri.002G185300' => 'ptr', 'Potri.006G086900' => 'ptr', 'Potri.008G151700' => 'ptr', 'Potri.009G033500' => 'ptr', 'Potri.010G089300' => 'ptr', 'Potri.014G110800' => 'ptr', 'Pp3c27_8130' => 'ppa', 'Pp3c6_27410' => 'ppa', 'PRCOL_00001659' => 'pco', 'PRCOL_00001927' => 'pco', 'PRCOL_00003649' => 'pco', 'Prupe.1G011600' => 'ppe', 'Prupe.3G000800' => 'ppe', 'Prupe.3G001100' => 'ppe', 'Prupe.6G072700' => 'ppe', 'Prupe.6G072800' => 'ppe', 'Prupe.6G257300' => 'ppe', 'Prupe.8G033000' => 'ppe', 'Psat0s2633g0080' => 'psa', 'Psat0s3396g0080' => 'psa', 'Psat0s3396g0200' => 'psa', 'Psat3g139080' => 'psa', 'Psat5g285080' => 'psa', 'Psat6g157760' => 'psa', 'Psat6g208440' => 'psa', 'Psat7g215320' => 'psa', 'Psat7g215400' => 'psa', 'Psat7g235600' => 'psa', 'Psat7g235760' => 'psa', 'PSO063G4603' => 'pso', 'PSO210G0182' => 'pso', 'PSO210G0196' => 'pso', 'PSO339G0394' => 'pso', 'PSO339G4127' => 'pso', 'PSO513G0064' => 'pso', 'PSO761G0079' => 'pso', 'QL01p031003' => 'qlo', 'QL01p031078' => 'qlo', 'QL06p003004' => 'qlo', 'QL07p048731' => 'qlo', 'QL09p037427' => 'qlo', 'RcHm_v2.0_Chr3g0466361' => 'rch', 'RcHm_v2.0_Chr3g0485571' => 'rch', 'RcHm_v2.0_Chr4g0416551' => 'rch', 'RcHm_v2.0_Chr5g0065831' => 'rch', 'Rhsim01G0230500' => 'rsi', 'Rhsim05G0194000' => 'rsi', 'Rhsim08G0250400' => 'rsi', 'Sabra02G0131000' => 'sbr', 'Sabra06G0066300' => 'sbr', 'Sabra08G0115500' => 'sbr', 'Sabra09G0023900' => 'sbr', 'Sabra10G0054000' => 'sbr', 'Sabra14G0081500' => 'sbr', 'Sabra16G0147100' => 'sbr', 'SalBow2G2957' => 'sbo', 'SalBow4G3320' => 'sbo', 'SalBow8G1894' => 'sbo', 'Sc07g0007950' => 'sci', 'Sc12g0001360' => 'sci', 'Sc13g0004330' => 'sci', 'Sc20g0005010' => 'sci', 'Sed0000361' => 'sed', 'Sed0001706' => 'sed', 'Sed0002422' => 'sed', 'Sed0004029' => 'sed', 'Sed0004602' => 'sed', 'Sed0004943' => 'sed', 'Sed0008646' => 'sed', 'Sed0023313' => 'sed', 'Sed0024843' => 'sed', 'SEGI_00081' => 'sgi', 'SEGI_00947' => 'sgi', 'SEGI_04046' => 'sgi', 'SEGI_06880' => 'sgi', 'SEGI_09736' => 'sgi', 'SEGI_12741' => 'sgi', 'SEGI_14530' => 'sgi', 'SEGI_20705' => 'sgi', 'SEGI_26088' => 'sgi', 'SEGI_28323' => 'sgi', 'SEGI_33343' => 'sgi', 'SGA_v2.0_scaffold126G33775' => 'sas', 'SGA_v2.0_scaffold2G01337' => 'sas', 'SGA_v2.0_scaffold38G15006' => 'sas', 'SGA_v2.0_scaffold39G15264' => 'sas', 'SGA_v2.0_scaffold453G51880' => 'sas', 'SHI12696' => 'shi', 'SMO367G1096' => 'smo', 'Solyc01g068630.3' => 'sly', 'Solyc05g011880.3' => 'sly', 'Solyc06g076300.3' => 'sly', 'Solyc09g010940.4' => 'sly', 'Solyc09g075890.3' => 'sly', 'Sopen01g030560' => 'spe', 'Sopen05g006630' => 'spe', 'Sopen06g032720' => 'spe', 'Sopen09g005660' => 'spe', 'Sopen09g030690' => 'spe', 'Sp4g14540' => 'spa', 'Sp4g20030' => 'spa', 'Sp5g01320' => 'spa', 'Sp6g21170' => 'spa', 'Sp6g21180' => 'spa', 'Sp6g21190' => 'spa', 'Sp6g40220' => 'spa', 'TAR362G0122' => 'tar', 'TAR362G1338' => 'tar', 'TAR369G0590' => 'tar', 'TAR371G0824' => 'tar', 'TAR622G1429' => 'tar', 'TAR623G0734' => 'tar', 'TAR625G0441' => 'tar', 'TAR629G0976' => 'tar', 'TAR633G1195' => 'tar', 'TAR636G2660' => 'tar', 'THA.LOC104799440' => 'tha', 'THA.LOC104800966' => 'tha', 'THA.LOC104806559' => 'tha', 'THA.LOC104810765' => 'tha', 'THA.LOC104816266' => 'tha', 'THA.LOC104817419' => 'tha', 'THA.LOC104827021' => 'tha', 'Thecc.01G327400' => 'tca', 'Thecc.04G229200' => 'tca', 'Thecc.05G037400' => 'tca', 'Thecc.09G318600' => 'tca', 'Thecc.09G318700' => 'tca', 'Thhalv10006238m.g' => 'esa', 'Thhalv10014321m.g' => 'esa', 'Thhalv10014335m.g' => 'esa', 'Thhalv10015826m.g' => 'esa', 'Thhalv10017107m.g' => 'esa', 'Thhalv10017180m.g' => 'esa', 'Thhalv10029339m.g' => 'esa', 'TPR.G1699' => 'tpr', 'TPR.G23609' => 'tpr', 'TPR.G3081' => 'tpr', 'TPR.G40397' => 'tpr', 'TPR.G5522' => 'tpr', 'TPR.G5618' => 'tpr', 'TPR.G5626' => 'tpr', 'TWI09G1632' => 'twi', 'TWI23G1230' => 'twi', 'TWI53G1064' => 'twi', 'TWI59G0751' => 'twi', 'TWI74G0947' => 'twi', 'TWI77G0337' => 'twi', 'TWI79G1254' => 'twi', 'unitig_0.g2341' => 'ugi', 'unitig_26.g10006' => 'ugi', 'unitig_26.g10008' => 'ugi', 'unitig_26.g9192' => 'ugi', 'vmacro14547' => 'vma', 'vmacro15333' => 'vma', 'vmacro18743' => 'vma', 'vmacro20166' => 'vma', 'VMungo0331G0523' => 'vmu', 'VMungo0331G1202' => 'vmu', 'VMungo0720G1228' => 'vmu', 'VMungo0720G1514' => 'vmu', 'VMungo1080G0169' => 'vmu', 'VMungo1127G1475' => 'vmu', 'VMungo1383G1208' => 'vmu', 'VMungo1383G1698' => 'vmu', 'Zm00001eb012270' => 'zma', 'Zm00001eb054100' => 'zma', 'Zm00001eb063350' => 'zma', 'Zm00001eb328560' => 'zma', 'Zm00001eb342820' => 'zma', 'Zm00001eb362210' => 'zma', 'Zm00001eb397730' => 'zma', 'Zm00001eb399750' => 'zma' ), 'gf_id' => 'HOM05D000959', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000959' ), 'data_identifier' => 'HOM05D000959', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000959', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '622', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p07100' => 'bna', 'A03p11720' => 'bna', 'A05p08300' => 'bna', 'A05p13380' => 'bna', 'A09p54130' => 'bna', 'A10p16690' => 'bna', 'A10p16700' => 'bna', 'A10p33390' => 'bna', 'Aa31LG10G16020' => 'aar', 'Aa31LG1G11810' => 'aar', 'Aa31LG1G11830' => 'aar', 'Aa31LG1G22510' => 'aar', 'Aa31LG5G4890' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5793' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2310' => 'aag', 'Actinidia08499' => 'ach', 'Actinidia11262' => 'ach', 'Actinidia23926' => 'ach', 'Actinidia34420' => 'ach', 'Actinidia36970' => 'ach', 'Ah.02g111220' => 'amhyb', 'Ah.15g097750' => 'amhyb', 'AL4G27500' => 'aly', 'AL6G11470' => 'aly', 'AL8G35950' => 'aly', 'AL8G35960' => 'aly', 'AL8G35970' => 'aly', 'Aqoxy1G00912' => 'aox', 'Aqoxy2G02253' => 'aox', 'Aqoxy2G02411' => 'aox', 'Aqoxy5G00485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BZ66YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K8ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM4FUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6BF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HFV7XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25JBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0YNNV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MAKK6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P70IT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP2Z6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V61LZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YWP64R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3S9AI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7PGHH' => 'arhy', 'AT2G32150' => 'ath', 'AT3G62040' => 'ath', 'AT5G02230' => 'ath', 'AT5G59480' => 'ath', 'AT5G59490' => 'ath', 'ATR0332G060' => 'atr', 'ATR0559G190' => 'atr', 'ATR0693G294' => 'atr', 'Atru.chr3.3975' => 'acertr', 'Atru.chr3.3976' => 'acertr', 'Atru.chr3.3977' => 'acertr', 'Atru.chr4.2498' => 'acertr', 'Atru.chr5.838' => 'acertr', 'Atru.chr8.1990' => 'acertr', 'Atru.chr8.1991' => 'acertr', 'Atru.chr8.1992' => 'acertr', 'AUR62001759' => 'cqu', 'AUR62009545' => 'cqu', 'AUR62010474' => 'cqu', 'AUR62025820' => 'cqu', 'AUR62030422' => 'cqu', 'AUR62033605' => 'cqu', 'AUR62038615' => 'cqu', 'AUR62041347' => 'cqu', 'BcaB01g04574' => 'bca', 'BcaB02g09263' => 'bca', 'BcaB02g10453' => 'bca', 'BcaB05g22513' => 'bca', 'BcaB08g36253' => 'bca', 'BcaB08g36254' => 'bca', 'BcaC01g06519' => 'bca', 'BcaC02g11889' => 'bca', 'BcaC03g14010' => 'bca', 'BcaC03g18439' => 'bca', 'BcaC04g19765' => 'bca', 'BcaC09g48432' => 'bca', 'BcaNung07302' => 'bca', 'BolC2t06040H' => 'bol', 'BolC2t07346H' => 'bol', 'BolC3t13817H' => 'bol', 'BolC4t22625H' => 'bol', 'BolC4t23297H' => 'bol', 'BolC8t51278H' => 'bol', 'BolC9t58050H' => 'bol', 'BolC9t58051H' => 'bol', 'BolC9t60163H' => 'bol', 'BraA02t04712Z' => 'bra', 'BraA02t05791Z' => 'bra', 'BraA03t10483Z' => 'bra', 'BraA05t19795Z' => 'bra', 'BraA05t20276Z' => 'bra', 'BraA09t40827Z' => 'bra', 'BraA10t43750Z' => 'bra', 'BraA10t43751Z' => 'bra', 'BraA10t45370Z' => 'bra', 'C02p00400' => 'bna', 'C02p12460' => 'bna', 'C03p13680' => 'bna', 'C04p10270' => 'bna', 'C04p17500' => 'bna', 'C08p37010' => 'bna', 'C09p51880' => 'bna', 'C09p51890' => 'bna', 'C09p74300' => 'bna', 'CAN.G179.26' => 'can', 'CAN.G3384.1' => 'can', 'CAN.G394.68' => 'can', 'CAN.G907.13' => 'can', 'CANSAT11G0012' => 'cansat', 'CANSAT25G1586' => 'cansat', 'CANSAT35G0735' => 'cansat', 'CANSAT54G0556' => 'cansat', 'CANSAT64G0356' => 'cansat', 'CANSAT78G2042' => 'cansat', 'CARHR125920' => 'chi', 'CARHR131910' => 'chi', 'CARHR172390' => 'chi', 'CARHR211140' => 'chi', 'CARHR285850' => 'chi', 'CARHR285860' => 'chi', 'Carub.0004s1347' => 'cru', 'Carub.0004s1960' => 'cru', 'Carub.0005s2880' => 'cru', 'Carub.0006s0107' => 'cru', 'Carub.0008s2015' => 'cru', 'Carub.0008s2016' => 'cru', 'Carub.0008s2017' => 'cru', 'Ca_01315_v3' => 'car', 'Ca_05063_v3' => 'car', 'Ca_10231_v3' => 'car', 'Ca_10913_v3' => 'car', 'Ca_19156_v3' => 'car', 'Ca_23644_v3' => 'car', 'Ca_26735_v3' => 'car', 'Cc01_g13130' => 'ccan', 'Cc02_g21690' => 'ccan', 'Cc03_g03600' => 'ccan', 'Cc06_g02510' => 'ccan', 'CDE02G1265' => 'cde', 'CDE05G0415' => 'cde', 'CDE08G1082' => 'cde', 'Cfa005780' => 'cfa', 'Cfa011522' => 'cfa', 'Cfa011523' => 'cfa', 'Cfa015627' => 'cfa', 'Cfa017359' => 'cfa', 'Ciclev10005687m.g' => 'ccl', 'Ciclev10012173m.g' => 'ccl', 'Ciclev10021621m.g' => 'ccl', 'Ciclev10028968m.g' => 'ccl', 'Ciclev10029907m.g' => 'ccl', 'CiPaw.01G164800' => 'cil', 'CiPaw.07G083700' => 'cil', 'CiPaw.07G127000' => 'cil', 'CiPaw.07G136900' => 'cil', 'CiPaw.08G081700' => 'cil', 'CiPaw.09G194600' => 'cil', 'CiPaw.10G146500' => 'cil', 'CiPaw.13G091500' => 'cil', 'CiPaw.13G091600' => 'cil', 'ClCG00G003390' => 'cla', 'ClCG01G007220' => 'cla', 'ClCG03G001370' => 'cla', 'ClCG04G008100' => 'cla', 'ClCG06G006110' => 'cla', 'ClCG06G006130' => 'cla', 'ClCG10G021210' => 'cla', 'COL.COLO4_07648' => 'col', 'COL.COLO4_07650' => 'col', 'COL.COLO4_07651' => 'col', 'COL.COLO4_14780' => 'col', 'COL.COLO4_18546' => 'col', 'COL.COLO4_18547' => 'col', 'COL.COLO4_23103' => 'col', 'COL.COLO4_30419' => 'col', 'COL.COLO4_34232' => 'col', 'Cpa.g.sc169.20' => 'cpa', 'Cpa.g.sc57.45' => 'cpa', 'Cpa.g.sc58.124' => 'cpa', 'Cpa.g.sc58.125' => 'cpa', 'Cpa.g.sc81.118' => 'cpa', 'Cpa.g.sc81.119' => 'cpa', 'Cre12.g524700' => 'cre', 'CsaV3_1G034430' => 'csa', 'CsaV3_1G034440' => 'csa', 'CsaV3_1G034450' => 'csa', 'CsaV3_3G034830' => 'csa', 'CsaV3_4G025090' => 'csa', 'CsaV3_5G018660' => 'csa', 'CsaV3_6G038160' => 'csa', 'CSS0003447' => 'camsi', 'CSS0017840' => 'camsi', 'CSS0019260' => 'camsi', 'CSS0040375' => 'camsi', 'CSS0042533' => 'camsi', 'DCAR_005960' => 'dca', 'DCAR_012104' => 'dca', 'DCAR_012105' => 'dca', 'DCAR_012293' => 'dca', 'DCAR_015632' => 'dca', 'DCAR_024602' => 'dca', 'DCAR_028752' => 'dca', 'Dinv06261' => 'din', 'Dinv13982' => 'din', 'Dinv17029' => 'din', 'Dinv18463' => 'din', 'Dinv33181' => 'din', 'Dinv35585' => 'din', 'Dinv37161' => 'din', 'Dinv42977' => 'din', 'Dinv43122' => 'din', 'Dinv44517' => 'din', 'Duzib093G0256' => 'dzi', 'Duzib106G1254' => 'dzi', 'Duzib128G1789' => 'dzi', 'Duzib133G0633' => 'dzi', 'Duzib138G0510' => 'dzi', 'Duzib150G1084' => 'dzi', 'Duzib168G0488' => 'dzi', 'Duzib168G1523' => 'dzi', 'Duzib170G0133' => 'dzi', 'ECA234G1433' => 'eca', 'ECA236G1432' => 'eca', 'ECA236G2256' => 'eca', 'ECA236G2365' => 'eca', 'ECA236G4830' => 'eca', 'ECA248G1505' => 'eca', 'EL10Ac3g06431' => 'bvu', 'EL10Ac5g12577' => 'bvu', 'EL10Ac6g13533' => 'bvu', 'EL10Ac7g16045' => 'bvu', 'Eucgr.A01281' => 'egr', 'Eucgr.B02326' => 'egr', 'Eucgr.H03532' => 'egr', 'Eucgr.K00553' => 'egr', 'Eucgr.K03116' => 'egr', 'FAN02G3963' => 'fan', 'FAN05G0438' => 'fan', 'FAN09G2434' => 'fan', 'FAN12G3984' => 'fan', 'FAN14G0798' => 'fan', 'FAN17G0652' => 'fan', 'FAN19G1988' => 'fan', 'FAN22G0632' => 'fan', 'FAN23G0387' => 'fan', 'FAN26G1323' => 'fan', 'FAN28G0666' => 'fan', 'FvH4_1g26080' => 'fve', 'FvH4_3g36780' => 'fve', 'FvH4_4g15270' => 'fve', 'FvH4_6g13490' => 'fve', 'Glyma.01G098700' => 'gma', 'Glyma.03G065900' => 'gma', 'Glyma.03G073754' => 'gma', 'Glyma.03G073758' => 'gma', 'Glyma.03G083200' => 'gma', 'Glyma.03G225500' => 'gma', 'Glyma.05G037766' => 'gma', 'Glyma.07G133500' => 'gma', 'Glyma.10G139400' => 'gma', 'Glyma.10G248900' => 'gma', 'Glyma.11G137800' => 'gma', 'Glyma.12G061300' => 'gma', 'Glyma.13G337900' => 'gma', 'Glyma.15G036600' => 'gma', 'Glyma.18G182800' => 'gma', 'Glyma.19G222500' => 'gma', 'Glyma.20G144800' => 'gma', 'Gohir.A01G222000' => 'ghi', 'Gohir.A03G044000' => 'ghi', 'Gohir.A03G044100' => 'ghi', 'Gohir.A04G083100' => 'ghi', 'Gohir.A07G127200' => 'ghi', 'Gohir.A07G132400' => 'ghi', 'Gohir.A08G000700' => 'ghi', 'Gohir.A11G327300' => 'ghi', 'Gohir.D01G211500' => 'ghi', 'Gohir.D03G123400' => 'ghi', 'Gohir.D03G123500' => 'ghi', 'Gohir.D04G121800' => 'ghi', 'Gohir.D07G131500' => 'ghi', 'Gohir.D07G136600' => 'ghi', 'Gohir.D08G011600' => 'ghi', 'Gohir.D11G346200' => 'ghi', 'Gorai.001G142800' => 'gra', 'Gorai.001G148700' => 'gra', 'Gorai.002G257300' => 'gra', 'Gorai.003G130000' => 'gra', 'Gorai.003G130100' => 'gra', 'Gorai.004G005300' => 'gra', 'Gorai.007G376500' => 'gra', 'Gorai.012G104700' => 'gra', 'GSVIVG01017946001' => 'vvi', 'GSVIVG01024928001' => 'vvi', 'GSVIVG01028227001' => 'vvi', 'GSVIVG01034151001' => 'vvi', 'HanXRQChr05g0135031' => 'han', 'HanXRQChr05g0135041' => 'han', 'HanXRQChr05g0140021' => 'han', 'HanXRQChr06g0178981' => 'han', 'HanXRQChr07g0188251' => 'han', 'HanXRQChr08g0235311' => 'han', 'HanXRQChr09g0271011' => 'han', 'HanXRQChr10g0293321' => 'han', 'HanXRQChr13g0388171' => 'han', 'Haze_00916' => 'cav', 'Haze_05063' => 'cav', 'Haze_20814' => 'cav', 'Haze_24128' => 'cav', 'Hma1.2p1_0745F.1_g212010' => 'hma', 'Hma1.2p1_0757F.1_g213260' => 'hma', 'Hma1.2p1_0936F.1_g238840' => 'hma', 'Hma1.2p1_1735F.1_g299890' => 'hma', 'Hma1.2p1_1861F.1_g305685' => 'hma', 'HPP92_003397' => 'vpl', 'HPP92_012597' => 'vpl', 'HPP92_015520' => 'vpl', 'HPP92_015539' => 'vpl', 'HPP92_020373' => 'vpl', 'Hund04938' => 'sun', 'Hund10677' => 'sun', 'Hund11033' => 'sun', 'Hund12155' => 'sun', 'Lalb_Chr01g0022551' => 'lal', 'Lalb_Chr03g0042341' => 'lal', 'Lalb_Chr07g0192931' => 'lal', 'Lalb_Chr12g0209551' => 'lal', 'Lalb_Chr19g0125251' => 'lal', 'Lalb_Chr19g0137891' => 'lal', 'Lalb_Chr21g0304641' => 'lal', 'Lalb_Chr21g0309881' => 'lal', 'Lj1A5T12' => 'lonja', 'Lj1C148G10' => 'lonja', 'Lj2A93T83' => 'lonja', 'Lj3A738G68' => 'lonja', 'Lj3C966T1' => 'lonja', 'Lj3g0018958' => 'lja', 'Lj3g0021831' => 'lja', 'Lj3g0025443' => 'lja', 'Lj4g0026809' => 'lja', 'Lj5g0012558' => 'lja', 'Lj5g0021586' => 'lja', 'Lsat_1_v5_gn_5_156840' => 'lsa', 'Lsat_1_v5_gn_8_73460' => 'lsa', 'Lsat_1_v5_gn_8_73481' => 'lsa', 'Lsat_1_v5_gn_9_31601' => 'lsa', 'Lsat_1_v5_gn_9_77320' => 'lsa', 'Manes.01G171300' => 'mes', 'Manes.01G171400' => 'mes', 'Manes.01G236100' => 'mes', 'Manes.02G130500' => 'mes', 'Manes.02G130600' => 'mes', 'Manes.03G180200' => 'mes', 'Manes.05G007000' => 'mes', 'Manes.08G084400' => 'mes', 'Manes.09G092600' => 'mes', 'Manes.15G027900' => 'mes', 'MBI04_g40948_MAGBIO' => 'mbi', 'MBI14_g12123_MAGBIO' => 'mbi', 'MBI18_g28915_MAGBIO' => 'mbi', 'MCO09G053' => 'mco', 'MCO11G782' => 'mco', 'MCO15G215' => 'mco', 'MD03G1088500' => 'mdo', 'MD03G1088600' => 'mdo', 'MD04G1130800' => 'mdo', 'MD09G1291700' => 'mdo', 'MD11G1097500' => 'mdo', 'MD11G1097600' => 'mdo', 'MD12G1143900' => 'mdo', 'MD13G1191400' => 'mdo', 'MD16G1191500' => 'mdo', 'Medtr1g085570' => 'mtr', 'Medtr1g104610' => 'mtr', 'Medtr2g097520' => 'mtr', 'Medtr4g021800' => 'mtr', 'Medtr4g021825' => 'mtr', 'Medtr4g064270' => 'mtr', 'Medtr4g064380' => 'mtr', 'Medtr7g062150' => 'mtr', 'MELO3C003138.2' => 'cme', 'MELO3C005187.2' => 'cme', 'MELO3C009252.2' => 'cme', 'MELO3C014481.2' => 'cme', 'MELO3C020616.2' => 'cme', 'MELO3C020617.2' => 'cme', 'MELO3C020618.2' => 'cme', 'Migut.G00328' => 'egut', 'Migut.J00320' => 'egut', 'Migut.L01000' => 'egut', 'Migut.L01953' => 'egut', 'MSTRG.10253' => 'ama', 'MSTRG.19077' => 'ama', 'MSTRG.26780' => 'ama', 'MSTRG.4023' => 'ama', 'MSTRG.5655' => 'ama', 'MSTRG.9992' => 'ama', 'Nitab4.5_0000043g0310' => 'nta', 'Nitab4.5_0000463g0080' => 'nta', 'Nitab4.5_0000705g0170' => 'nta', 'Nitab4.5_0001326g0060' => 'nta', 'Nitab4.5_0001628g0030' => 'nta', 'Nitab4.5_0002103g0110' => 'nta', 'Nitab4.5_0002946g0030' => 'nta', 'Nitab4.5_0004639g0030' => 'nta', 'Nn2g11149' => 'nnu', 'Nn2g13389' => 'nnu', 'Nn4g25326' => 'nnu', 'Nn4g26290' => 'nnu', 'Nn5g29865' => 'nnu', 'Oeu004163.1' => 'oeu', 'Oeu006901.1' => 'oeu', 'Oeu010096.1' => 'oeu', 'Oeu024340.1' => 'oeu', 'Oeu048369.1' => 'oeu', 'Os01g0973000' => 'osa', 'Os03g0273800' => 'osa', 'Os03g0701200' => 'osa', 'Os03g0834050' => 'osa', 'Os07g0634400' => 'osa', 'Peaxi162Scf00092g01414' => 'pax', 'Peaxi162Scf00165g00818' => 'pax', 'Peaxi162Scf00309g00516' => 'pax', 'Peaxi162Scf00774g00218' => 'pax', 'PGR004G1824' => 'pgr', 'PGR004G2606' => 'pgr', 'PGR031G2716' => 'pgr', 'PGR102G2460' => 'pgr', 'PGR142G2599' => 'pgr', 'PGSC0003DMG400000843' => 'stu', 'PGSC0003DMG400008829' => 'stu', 'PGSC0003DMG400030418' => 'stu', 'PGSC0003DMG400031834' => 'stu', 'PGSC0003DMG401028300' => 'stu', 'PGSC0003DMG402028300' => 'stu', 'Phvul.001G219300' => 'pvu', 'Phvul.007G056000' => 'pvu', 'Phvul.007G208000' => 'pvu', 'Phvul.008G119500' => 'pvu', 'Phvul.010G011200' => 'pvu', 'Phvul.010G014800' => 'pvu', 'Phvul.011G062900' => 'pvu', 'Phvul.L007043' => 'pvu', 'Potri.001G242300' => 'ptr', 'Potri.002G185300' => 'ptr', 'Potri.006G086900' => 'ptr', 'Potri.008G151700' => 'ptr', 'Potri.009G033500' => 'ptr', 'Potri.010G089300' => 'ptr', 'Potri.014G110800' => 'ptr', 'Pp3c27_8130' => 'ppa', 'Pp3c6_27410' => 'ppa', 'PRCOL_00001659' => 'pco', 'PRCOL_00001927' => 'pco', 'PRCOL_00003649' => 'pco', 'Prupe.1G011600' => 'ppe', 'Prupe.3G000800' => 'ppe', 'Prupe.3G001100' => 'ppe', 'Prupe.6G072700' => 'ppe', 'Prupe.6G072800' => 'ppe', 'Prupe.6G257300' => 'ppe', 'Prupe.8G033000' => 'ppe', 'Psat0s2633g0080' => 'psa', 'Psat0s3396g0080' => 'psa', 'Psat0s3396g0200' => 'psa', 'Psat3g139080' => 'psa', 'Psat5g285080' => 'psa', 'Psat6g157760' => 'psa', 'Psat6g208440' => 'psa', 'Psat7g215320' => 'psa', 'Psat7g215400' => 'psa', 'Psat7g235600' => 'psa', 'Psat7g235760' => 'psa', 'PSO063G4603' => 'pso', 'PSO210G0182' => 'pso', 'PSO210G0196' => 'pso', 'PSO339G0394' => 'pso', 'PSO339G4127' => 'pso', 'PSO513G0064' => 'pso', 'PSO761G0079' => 'pso', 'QL01p031003' => 'qlo', 'QL01p031078' => 'qlo', 'QL06p003004' => 'qlo', 'QL07p048731' => 'qlo', 'QL09p037427' => 'qlo', 'RcHm_v2.0_Chr3g0466361' => 'rch', 'RcHm_v2.0_Chr3g0485571' => 'rch', 'RcHm_v2.0_Chr4g0416551' => 'rch', 'RcHm_v2.0_Chr5g0065831' => 'rch', 'Rhsim01G0230500' => 'rsi', 'Rhsim05G0194000' => 'rsi', 'Rhsim08G0250400' => 'rsi', 'Sabra02G0131000' => 'sbr', 'Sabra06G0066300' => 'sbr', 'Sabra08G0115500' => 'sbr', 'Sabra09G0023900' => 'sbr', 'Sabra10G0054000' => 'sbr', 'Sabra14G0081500' => 'sbr', 'Sabra16G0147100' => 'sbr', 'SalBow2G2957' => 'sbo', 'SalBow4G3320' => 'sbo', 'SalBow8G1894' => 'sbo', 'Sc07g0007950' => 'sci', 'Sc12g0001360' => 'sci', 'Sc13g0004330' => 'sci', 'Sc20g0005010' => 'sci', 'Sed0000361' => 'sed', 'Sed0001706' => 'sed', 'Sed0002422' => 'sed', 'Sed0004029' => 'sed', 'Sed0004602' => 'sed', 'Sed0004943' => 'sed', 'Sed0008646' => 'sed', 'Sed0023313' => 'sed', 'Sed0024843' => 'sed', 'SEGI_00081' => 'sgi', 'SEGI_00947' => 'sgi', 'SEGI_04046' => 'sgi', 'SEGI_06880' => 'sgi', 'SEGI_09736' => 'sgi', 'SEGI_12741' => 'sgi', 'SEGI_14530' => 'sgi', 'SEGI_20705' => 'sgi', 'SEGI_26088' => 'sgi', 'SEGI_28323' => 'sgi', 'SEGI_33343' => 'sgi', 'SGA_v2.0_scaffold126G33775' => 'sas', 'SGA_v2.0_scaffold2G01337' => 'sas', 'SGA_v2.0_scaffold38G15006' => 'sas', 'SGA_v2.0_scaffold39G15264' => 'sas', 'SGA_v2.0_scaffold453G51880' => 'sas', 'SHI12696' => 'shi', 'SMO367G1096' => 'smo', 'Solyc01g068630.3' => 'sly', 'Solyc05g011880.3' => 'sly', 'Solyc06g076300.3' => 'sly', 'Solyc09g010940.4' => 'sly', 'Solyc09g075890.3' => 'sly', 'Sopen01g030560' => 'spe', 'Sopen05g006630' => 'spe', 'Sopen06g032720' => 'spe', 'Sopen09g005660' => 'spe', 'Sopen09g030690' => 'spe', 'Sp4g14540' => 'spa', 'Sp4g20030' => 'spa', 'Sp5g01320' => 'spa', 'Sp6g21170' => 'spa', 'Sp6g21180' => 'spa', 'Sp6g21190' => 'spa', 'Sp6g40220' => 'spa', 'TAR362G0122' => 'tar', 'TAR362G1338' => 'tar', 'TAR369G0590' => 'tar', 'TAR371G0824' => 'tar', 'TAR622G1429' => 'tar', 'TAR623G0734' => 'tar', 'TAR625G0441' => 'tar', 'TAR629G0976' => 'tar', 'TAR633G1195' => 'tar', 'TAR636G2660' => 'tar', 'THA.LOC104799440' => 'tha', 'THA.LOC104800966' => 'tha', 'THA.LOC104806559' => 'tha', 'THA.LOC104810765' => 'tha', 'THA.LOC104816266' => 'tha', 'THA.LOC104817419' => 'tha', 'THA.LOC104827021' => 'tha', 'Thecc.01G327400' => 'tca', 'Thecc.04G229200' => 'tca', 'Thecc.05G037400' => 'tca', 'Thecc.09G318600' => 'tca', 'Thecc.09G318700' => 'tca', 'Thhalv10006238m.g' => 'esa', 'Thhalv10014321m.g' => 'esa', 'Thhalv10014335m.g' => 'esa', 'Thhalv10015826m.g' => 'esa', 'Thhalv10017107m.g' => 'esa', 'Thhalv10017180m.g' => 'esa', 'Thhalv10029339m.g' => 'esa', 'TPR.G1699' => 'tpr', 'TPR.G23609' => 'tpr', 'TPR.G3081' => 'tpr', 'TPR.G40397' => 'tpr', 'TPR.G5522' => 'tpr', 'TPR.G5618' => 'tpr', 'TPR.G5626' => 'tpr', 'TWI09G1632' => 'twi', 'TWI23G1230' => 'twi', 'TWI53G1064' => 'twi', 'TWI59G0751' => 'twi', 'TWI74G0947' => 'twi', 'TWI77G0337' => 'twi', 'TWI79G1254' => 'twi', 'unitig_0.g2341' => 'ugi', 'unitig_26.g10006' => 'ugi', 'unitig_26.g10008' => 'ugi', 'unitig_26.g9192' => 'ugi', 'vmacro14547' => 'vma', 'vmacro15333' => 'vma', 'vmacro18743' => 'vma', 'vmacro20166' => 'vma', 'VMungo0331G0523' => 'vmu', 'VMungo0331G1202' => 'vmu', 'VMungo0720G1228' => 'vmu', 'VMungo0720G1514' => 'vmu', 'VMungo1080G0169' => 'vmu', 'VMungo1127G1475' => 'vmu', 'VMungo1383G1208' => 'vmu', 'VMungo1383G1698' => 'vmu', 'Zm00001eb012270' => 'zma', 'Zm00001eb054100' => 'zma', 'Zm00001eb063350' => 'zma', 'Zm00001eb328560' => 'zma', 'Zm00001eb342820' => 'zma', 'Zm00001eb362210' => 'zma', 'Zm00001eb397730' => 'zma', 'Zm00001eb399750' => 'zma' ) $gf_id = 'HOM05D000959' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000959' ) $data_identifier = 'HOM05D000959' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 5, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 5, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 10, 'mbi' => (int) 3, 'mco' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 2, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 3, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 11, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399750' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000959', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '622', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p07100' => 'bna', 'A03p11720' => 'bna', 'A05p08300' => 'bna', 'A05p13380' => 'bna', 'A09p54130' => 'bna', 'A10p16690' => 'bna', 'A10p16700' => 'bna', 'A10p33390' => 'bna', 'Aa31LG10G16020' => 'aar', 'Aa31LG1G11810' => 'aar', 'Aa31LG1G11830' => 'aar', 'Aa31LG1G22510' => 'aar', 'Aa31LG5G4890' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5793' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2310' => 'aag', 'Actinidia08499' => 'ach', 'Actinidia11262' => 'ach', 'Actinidia23926' => 'ach', 'Actinidia34420' => 'ach', 'Actinidia36970' => 'ach', 'Ah.02g111220' => 'amhyb', 'Ah.15g097750' => 'amhyb', 'AL4G27500' => 'aly', 'AL6G11470' => 'aly', 'AL8G35950' => 'aly', 'AL8G35960' => 'aly', 'AL8G35970' => 'aly', 'Aqoxy1G00912' => 'aox', 'Aqoxy2G02253' => 'aox', 'Aqoxy2G02411' => 'aox', 'Aqoxy5G00485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BZ66YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K8ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM4FUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6BF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HFV7XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25JBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0YNNV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MAKK6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P70IT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP2Z6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V61LZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YWP64R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3S9AI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7PGHH' => 'arhy', 'AT2G32150' => 'ath', 'AT3G62040' => 'ath', 'AT5G02230' => 'ath', 'AT5G59480' => 'ath', 'AT5G59490' => 'ath', 'ATR0332G060' => 'atr', 'ATR0559G190' => 'atr', 'ATR0693G294' => 'atr', 'Atru.chr3.3975' => 'acertr', 'Atru.chr3.3976' => 'acertr', 'Atru.chr3.3977' => 'acertr', 'Atru.chr4.2498' => 'acertr', 'Atru.chr5.838' => 'acertr', 'Atru.chr8.1990' => 'acertr', 'Atru.chr8.1991' => 'acertr', 'Atru.chr8.1992' => 'acertr', 'AUR62001759' => 'cqu', 'AUR62009545' => 'cqu', 'AUR62010474' => 'cqu', 'AUR62025820' => 'cqu', 'AUR62030422' => 'cqu', 'AUR62033605' => 'cqu', 'AUR62038615' => 'cqu', 'AUR62041347' => 'cqu', 'BcaB01g04574' => 'bca', 'BcaB02g09263' => 'bca', 'BcaB02g10453' => 'bca', 'BcaB05g22513' => 'bca', 'BcaB08g36253' => 'bca', 'BcaB08g36254' => 'bca', 'BcaC01g06519' => 'bca', 'BcaC02g11889' => 'bca', 'BcaC03g14010' => 'bca', 'BcaC03g18439' => 'bca', 'BcaC04g19765' => 'bca', 'BcaC09g48432' => 'bca', 'BcaNung07302' => 'bca', 'BolC2t06040H' => 'bol', 'BolC2t07346H' => 'bol', 'BolC3t13817H' => 'bol', 'BolC4t22625H' => 'bol', 'BolC4t23297H' => 'bol', 'BolC8t51278H' => 'bol', 'BolC9t58050H' => 'bol', 'BolC9t58051H' => 'bol', 'BolC9t60163H' => 'bol', 'BraA02t04712Z' => 'bra', 'BraA02t05791Z' => 'bra', 'BraA03t10483Z' => 'bra', 'BraA05t19795Z' => 'bra', 'BraA05t20276Z' => 'bra', 'BraA09t40827Z' => 'bra', 'BraA10t43750Z' => 'bra', 'BraA10t43751Z' => 'bra', 'BraA10t45370Z' => 'bra', 'C02p00400' => 'bna', 'C02p12460' => 'bna', 'C03p13680' => 'bna', 'C04p10270' => 'bna', 'C04p17500' => 'bna', 'C08p37010' => 'bna', 'C09p51880' => 'bna', 'C09p51890' => 'bna', 'C09p74300' => 'bna', 'CAN.G179.26' => 'can', 'CAN.G3384.1' => 'can', 'CAN.G394.68' => 'can', 'CAN.G907.13' => 'can', 'CANSAT11G0012' => 'cansat', 'CANSAT25G1586' => 'cansat', 'CANSAT35G0735' => 'cansat', 'CANSAT54G0556' => 'cansat', 'CANSAT64G0356' => 'cansat', 'CANSAT78G2042' => 'cansat', 'CARHR125920' => 'chi', 'CARHR131910' => 'chi', 'CARHR172390' => 'chi', 'CARHR211140' => 'chi', 'CARHR285850' => 'chi', 'CARHR285860' => 'chi', 'Carub.0004s1347' => 'cru', 'Carub.0004s1960' => 'cru', 'Carub.0005s2880' => 'cru', 'Carub.0006s0107' => 'cru', 'Carub.0008s2015' => 'cru', 'Carub.0008s2016' => 'cru', 'Carub.0008s2017' => 'cru', 'Ca_01315_v3' => 'car', 'Ca_05063_v3' => 'car', 'Ca_10231_v3' => 'car', 'Ca_10913_v3' => 'car', 'Ca_19156_v3' => 'car', 'Ca_23644_v3' => 'car', 'Ca_26735_v3' => 'car', 'Cc01_g13130' => 'ccan', 'Cc02_g21690' => 'ccan', 'Cc03_g03600' => 'ccan', 'Cc06_g02510' => 'ccan', 'CDE02G1265' => 'cde', 'CDE05G0415' => 'cde', 'CDE08G1082' => 'cde', 'Cfa005780' => 'cfa', 'Cfa011522' => 'cfa', 'Cfa011523' => 'cfa', 'Cfa015627' => 'cfa', 'Cfa017359' => 'cfa', 'Ciclev10005687m.g' => 'ccl', 'Ciclev10012173m.g' => 'ccl', 'Ciclev10021621m.g' => 'ccl', 'Ciclev10028968m.g' => 'ccl', 'Ciclev10029907m.g' => 'ccl', 'CiPaw.01G164800' => 'cil', 'CiPaw.07G083700' => 'cil', 'CiPaw.07G127000' => 'cil', 'CiPaw.07G136900' => 'cil', 'CiPaw.08G081700' => 'cil', 'CiPaw.09G194600' => 'cil', 'CiPaw.10G146500' => 'cil', 'CiPaw.13G091500' => 'cil', 'CiPaw.13G091600' => 'cil', 'ClCG00G003390' => 'cla', 'ClCG01G007220' => 'cla', 'ClCG03G001370' => 'cla', 'ClCG04G008100' => 'cla', 'ClCG06G006110' => 'cla', 'ClCG06G006130' => 'cla', 'ClCG10G021210' => 'cla', 'COL.COLO4_07648' => 'col', 'COL.COLO4_07650' => 'col', 'COL.COLO4_07651' => 'col', 'COL.COLO4_14780' => 'col', 'COL.COLO4_18546' => 'col', 'COL.COLO4_18547' => 'col', 'COL.COLO4_23103' => 'col', 'COL.COLO4_30419' => 'col', 'COL.COLO4_34232' => 'col', 'Cpa.g.sc169.20' => 'cpa', 'Cpa.g.sc57.45' => 'cpa', 'Cpa.g.sc58.124' => 'cpa', 'Cpa.g.sc58.125' => 'cpa', 'Cpa.g.sc81.118' => 'cpa', 'Cpa.g.sc81.119' => 'cpa', 'Cre12.g524700' => 'cre', 'CsaV3_1G034430' => 'csa', 'CsaV3_1G034440' => 'csa', 'CsaV3_1G034450' => 'csa', 'CsaV3_3G034830' => 'csa', 'CsaV3_4G025090' => 'csa', 'CsaV3_5G018660' => 'csa', 'CsaV3_6G038160' => 'csa', 'CSS0003447' => 'camsi', 'CSS0017840' => 'camsi', 'CSS0019260' => 'camsi', 'CSS0040375' => 'camsi', 'CSS0042533' => 'camsi', 'DCAR_005960' => 'dca', 'DCAR_012104' => 'dca', 'DCAR_012105' => 'dca', 'DCAR_012293' => 'dca', 'DCAR_015632' => 'dca', 'DCAR_024602' => 'dca', 'DCAR_028752' => 'dca', 'Dinv06261' => 'din', 'Dinv13982' => 'din', 'Dinv17029' => 'din', 'Dinv18463' => 'din', 'Dinv33181' => 'din', 'Dinv35585' => 'din', 'Dinv37161' => 'din', 'Dinv42977' => 'din', 'Dinv43122' => 'din', 'Dinv44517' => 'din', 'Duzib093G0256' => 'dzi', 'Duzib106G1254' => 'dzi', 'Duzib128G1789' => 'dzi', 'Duzib133G0633' => 'dzi', 'Duzib138G0510' => 'dzi', 'Duzib150G1084' => 'dzi', 'Duzib168G0488' => 'dzi', 'Duzib168G1523' => 'dzi', 'Duzib170G0133' => 'dzi', 'ECA234G1433' => 'eca', 'ECA236G1432' => 'eca', 'ECA236G2256' => 'eca', 'ECA236G2365' => 'eca', 'ECA236G4830' => 'eca', 'ECA248G1505' => 'eca', 'EL10Ac3g06431' => 'bvu', 'EL10Ac5g12577' => 'bvu', 'EL10Ac6g13533' => 'bvu', 'EL10Ac7g16045' => 'bvu', 'Eucgr.A01281' => 'egr', 'Eucgr.B02326' => 'egr', 'Eucgr.H03532' => 'egr', 'Eucgr.K00553' => 'egr', 'Eucgr.K03116' => 'egr', 'FAN02G3963' => 'fan', 'FAN05G0438' => 'fan', 'FAN09G2434' => 'fan', 'FAN12G3984' => 'fan', 'FAN14G0798' => 'fan', 'FAN17G0652' => 'fan', 'FAN19G1988' => 'fan', 'FAN22G0632' => 'fan', 'FAN23G0387' => 'fan', 'FAN26G1323' => 'fan', 'FAN28G0666' => 'fan', 'FvH4_1g26080' => 'fve', 'FvH4_3g36780' => 'fve', 'FvH4_4g15270' => 'fve', 'FvH4_6g13490' => 'fve', 'Glyma.01G098700' => 'gma', 'Glyma.03G065900' => 'gma', 'Glyma.03G073754' => 'gma', 'Glyma.03G073758' => 'gma', 'Glyma.03G083200' => 'gma', 'Glyma.03G225500' => 'gma', 'Glyma.05G037766' => 'gma', 'Glyma.07G133500' => 'gma', 'Glyma.10G139400' => 'gma', 'Glyma.10G248900' => 'gma', 'Glyma.11G137800' => 'gma', 'Glyma.12G061300' => 'gma', 'Glyma.13G337900' => 'gma', 'Glyma.15G036600' => 'gma', 'Glyma.18G182800' => 'gma', 'Glyma.19G222500' => 'gma', 'Glyma.20G144800' => 'gma', 'Gohir.A01G222000' => 'ghi', 'Gohir.A03G044000' => 'ghi', 'Gohir.A03G044100' => 'ghi', 'Gohir.A04G083100' => 'ghi', 'Gohir.A07G127200' => 'ghi', 'Gohir.A07G132400' => 'ghi', 'Gohir.A08G000700' => 'ghi', 'Gohir.A11G327300' => 'ghi', 'Gohir.D01G211500' => 'ghi', 'Gohir.D03G123400' => 'ghi', 'Gohir.D03G123500' => 'ghi', 'Gohir.D04G121800' => 'ghi', 'Gohir.D07G131500' => 'ghi', 'Gohir.D07G136600' => 'ghi', 'Gohir.D08G011600' => 'ghi', 'Gohir.D11G346200' => 'ghi', 'Gorai.001G142800' => 'gra', 'Gorai.001G148700' => 'gra', 'Gorai.002G257300' => 'gra', 'Gorai.003G130000' => 'gra', 'Gorai.003G130100' => 'gra', 'Gorai.004G005300' => 'gra', 'Gorai.007G376500' => 'gra', 'Gorai.012G104700' => 'gra', 'GSVIVG01017946001' => 'vvi', 'GSVIVG01024928001' => 'vvi', 'GSVIVG01028227001' => 'vvi', 'GSVIVG01034151001' => 'vvi', 'HanXRQChr05g0135031' => 'han', 'HanXRQChr05g0135041' => 'han', 'HanXRQChr05g0140021' => 'han', 'HanXRQChr06g0178981' => 'han', 'HanXRQChr07g0188251' => 'han', 'HanXRQChr08g0235311' => 'han', 'HanXRQChr09g0271011' => 'han', 'HanXRQChr10g0293321' => 'han', 'HanXRQChr13g0388171' => 'han', 'Haze_00916' => 'cav', 'Haze_05063' => 'cav', 'Haze_20814' => 'cav', 'Haze_24128' => 'cav', 'Hma1.2p1_0745F.1_g212010' => 'hma', 'Hma1.2p1_0757F.1_g213260' => 'hma', 'Hma1.2p1_0936F.1_g238840' => 'hma', 'Hma1.2p1_1735F.1_g299890' => 'hma', 'Hma1.2p1_1861F.1_g305685' => 'hma', 'HPP92_003397' => 'vpl', 'HPP92_012597' => 'vpl', 'HPP92_015520' => 'vpl', 'HPP92_015539' => 'vpl', 'HPP92_020373' => 'vpl', 'Hund04938' => 'sun', 'Hund10677' => 'sun', 'Hund11033' => 'sun', 'Hund12155' => 'sun', 'Lalb_Chr01g0022551' => 'lal', 'Lalb_Chr03g0042341' => 'lal', 'Lalb_Chr07g0192931' => 'lal', 'Lalb_Chr12g0209551' => 'lal', 'Lalb_Chr19g0125251' => 'lal', 'Lalb_Chr19g0137891' => 'lal', 'Lalb_Chr21g0304641' => 'lal', 'Lalb_Chr21g0309881' => 'lal', 'Lj1A5T12' => 'lonja', 'Lj1C148G10' => 'lonja', 'Lj2A93T83' => 'lonja', 'Lj3A738G68' => 'lonja', 'Lj3C966T1' => 'lonja', 'Lj3g0018958' => 'lja', 'Lj3g0021831' => 'lja', 'Lj3g0025443' => 'lja', 'Lj4g0026809' => 'lja', 'Lj5g0012558' => 'lja', 'Lj5g0021586' => 'lja', 'Lsat_1_v5_gn_5_156840' => 'lsa', 'Lsat_1_v5_gn_8_73460' => 'lsa', 'Lsat_1_v5_gn_8_73481' => 'lsa', 'Lsat_1_v5_gn_9_31601' => 'lsa', 'Lsat_1_v5_gn_9_77320' => 'lsa', 'Manes.01G171300' => 'mes', 'Manes.01G171400' => 'mes', 'Manes.01G236100' => 'mes', 'Manes.02G130500' => 'mes', 'Manes.02G130600' => 'mes', 'Manes.03G180200' => 'mes', 'Manes.05G007000' => 'mes', 'Manes.08G084400' => 'mes', 'Manes.09G092600' => 'mes', 'Manes.15G027900' => 'mes', 'MBI04_g40948_MAGBIO' => 'mbi', 'MBI14_g12123_MAGBIO' => 'mbi', 'MBI18_g28915_MAGBIO' => 'mbi', 'MCO09G053' => 'mco', 'MCO11G782' => 'mco', 'MCO15G215' => 'mco', 'MD03G1088500' => 'mdo', 'MD03G1088600' => 'mdo', 'MD04G1130800' => 'mdo', 'MD09G1291700' => 'mdo', 'MD11G1097500' => 'mdo', 'MD11G1097600' => 'mdo', 'MD12G1143900' => 'mdo', 'MD13G1191400' => 'mdo', 'MD16G1191500' => 'mdo', 'Medtr1g085570' => 'mtr', 'Medtr1g104610' => 'mtr', 'Medtr2g097520' => 'mtr', 'Medtr4g021800' => 'mtr', 'Medtr4g021825' => 'mtr', 'Medtr4g064270' => 'mtr', 'Medtr4g064380' => 'mtr', 'Medtr7g062150' => 'mtr', 'MELO3C003138.2' => 'cme', 'MELO3C005187.2' => 'cme', 'MELO3C009252.2' => 'cme', 'MELO3C014481.2' => 'cme', 'MELO3C020616.2' => 'cme', 'MELO3C020617.2' => 'cme', 'MELO3C020618.2' => 'cme', 'Migut.G00328' => 'egut', 'Migut.J00320' => 'egut', 'Migut.L01000' => 'egut', 'Migut.L01953' => 'egut', 'MSTRG.10253' => 'ama', 'MSTRG.19077' => 'ama', 'MSTRG.26780' => 'ama', 'MSTRG.4023' => 'ama', 'MSTRG.5655' => 'ama', 'MSTRG.9992' => 'ama', 'Nitab4.5_0000043g0310' => 'nta', 'Nitab4.5_0000463g0080' => 'nta', 'Nitab4.5_0000705g0170' => 'nta', 'Nitab4.5_0001326g0060' => 'nta', 'Nitab4.5_0001628g0030' => 'nta', 'Nitab4.5_0002103g0110' => 'nta', 'Nitab4.5_0002946g0030' => 'nta', 'Nitab4.5_0004639g0030' => 'nta', 'Nn2g11149' => 'nnu', 'Nn2g13389' => 'nnu', 'Nn4g25326' => 'nnu', 'Nn4g26290' => 'nnu', 'Nn5g29865' => 'nnu', 'Oeu004163.1' => 'oeu', 'Oeu006901.1' => 'oeu', 'Oeu010096.1' => 'oeu', 'Oeu024340.1' => 'oeu', 'Oeu048369.1' => 'oeu', 'Os01g0973000' => 'osa', 'Os03g0273800' => 'osa', 'Os03g0701200' => 'osa', 'Os03g0834050' => 'osa', 'Os07g0634400' => 'osa', 'Peaxi162Scf00092g01414' => 'pax', 'Peaxi162Scf00165g00818' => 'pax', 'Peaxi162Scf00309g00516' => 'pax', 'Peaxi162Scf00774g00218' => 'pax', 'PGR004G1824' => 'pgr', 'PGR004G2606' => 'pgr', 'PGR031G2716' => 'pgr', 'PGR102G2460' => 'pgr', 'PGR142G2599' => 'pgr', 'PGSC0003DMG400000843' => 'stu', 'PGSC0003DMG400008829' => 'stu', 'PGSC0003DMG400030418' => 'stu', 'PGSC0003DMG400031834' => 'stu', 'PGSC0003DMG401028300' => 'stu', 'PGSC0003DMG402028300' => 'stu', 'Phvul.001G219300' => 'pvu', 'Phvul.007G056000' => 'pvu', 'Phvul.007G208000' => 'pvu', 'Phvul.008G119500' => 'pvu', 'Phvul.010G011200' => 'pvu', 'Phvul.010G014800' => 'pvu', 'Phvul.011G062900' => 'pvu', 'Phvul.L007043' => 'pvu', 'Potri.001G242300' => 'ptr', 'Potri.002G185300' => 'ptr', 'Potri.006G086900' => 'ptr', 'Potri.008G151700' => 'ptr', 'Potri.009G033500' => 'ptr', 'Potri.010G089300' => 'ptr', 'Potri.014G110800' => 'ptr', 'Pp3c27_8130' => 'ppa', 'Pp3c6_27410' => 'ppa', 'PRCOL_00001659' => 'pco', 'PRCOL_00001927' => 'pco', 'PRCOL_00003649' => 'pco', 'Prupe.1G011600' => 'ppe', 'Prupe.3G000800' => 'ppe', 'Prupe.3G001100' => 'ppe', 'Prupe.6G072700' => 'ppe', 'Prupe.6G072800' => 'ppe', 'Prupe.6G257300' => 'ppe', 'Prupe.8G033000' => 'ppe', 'Psat0s2633g0080' => 'psa', 'Psat0s3396g0080' => 'psa', 'Psat0s3396g0200' => 'psa', 'Psat3g139080' => 'psa', 'Psat5g285080' => 'psa', 'Psat6g157760' => 'psa', 'Psat6g208440' => 'psa', 'Psat7g215320' => 'psa', 'Psat7g215400' => 'psa', 'Psat7g235600' => 'psa', 'Psat7g235760' => 'psa', 'PSO063G4603' => 'pso', 'PSO210G0182' => 'pso', 'PSO210G0196' => 'pso', 'PSO339G0394' => 'pso', 'PSO339G4127' => 'pso', 'PSO513G0064' => 'pso', 'PSO761G0079' => 'pso', 'QL01p031003' => 'qlo', 'QL01p031078' => 'qlo', 'QL06p003004' => 'qlo', 'QL07p048731' => 'qlo', 'QL09p037427' => 'qlo', 'RcHm_v2.0_Chr3g0466361' => 'rch', 'RcHm_v2.0_Chr3g0485571' => 'rch', 'RcHm_v2.0_Chr4g0416551' => 'rch', 'RcHm_v2.0_Chr5g0065831' => 'rch', 'Rhsim01G0230500' => 'rsi', 'Rhsim05G0194000' => 'rsi', 'Rhsim08G0250400' => 'rsi', 'Sabra02G0131000' => 'sbr', 'Sabra06G0066300' => 'sbr', 'Sabra08G0115500' => 'sbr', 'Sabra09G0023900' => 'sbr', 'Sabra10G0054000' => 'sbr', 'Sabra14G0081500' => 'sbr', 'Sabra16G0147100' => 'sbr', 'SalBow2G2957' => 'sbo', 'SalBow4G3320' => 'sbo', 'SalBow8G1894' => 'sbo', 'Sc07g0007950' => 'sci', 'Sc12g0001360' => 'sci', 'Sc13g0004330' => 'sci', 'Sc20g0005010' => 'sci', 'Sed0000361' => 'sed', 'Sed0001706' => 'sed', 'Sed0002422' => 'sed', 'Sed0004029' => 'sed', 'Sed0004602' => 'sed', 'Sed0004943' => 'sed', 'Sed0008646' => 'sed', 'Sed0023313' => 'sed', 'Sed0024843' => 'sed', 'SEGI_00081' => 'sgi', 'SEGI_00947' => 'sgi', 'SEGI_04046' => 'sgi', 'SEGI_06880' => 'sgi', 'SEGI_09736' => 'sgi', 'SEGI_12741' => 'sgi', 'SEGI_14530' => 'sgi', 'SEGI_20705' => 'sgi', 'SEGI_26088' => 'sgi', 'SEGI_28323' => 'sgi', 'SEGI_33343' => 'sgi', 'SGA_v2.0_scaffold126G33775' => 'sas', 'SGA_v2.0_scaffold2G01337' => 'sas', 'SGA_v2.0_scaffold38G15006' => 'sas', 'SGA_v2.0_scaffold39G15264' => 'sas', 'SGA_v2.0_scaffold453G51880' => 'sas', 'SHI12696' => 'shi', 'SMO367G1096' => 'smo', 'Solyc01g068630.3' => 'sly', 'Solyc05g011880.3' => 'sly', 'Solyc06g076300.3' => 'sly', 'Solyc09g010940.4' => 'sly', 'Solyc09g075890.3' => 'sly', 'Sopen01g030560' => 'spe', 'Sopen05g006630' => 'spe', 'Sopen06g032720' => 'spe', 'Sopen09g005660' => 'spe', 'Sopen09g030690' => 'spe', 'Sp4g14540' => 'spa', 'Sp4g20030' => 'spa', 'Sp5g01320' => 'spa', 'Sp6g21170' => 'spa', 'Sp6g21180' => 'spa', 'Sp6g21190' => 'spa', 'Sp6g40220' => 'spa', 'TAR362G0122' => 'tar', 'TAR362G1338' => 'tar', 'TAR369G0590' => 'tar', 'TAR371G0824' => 'tar', 'TAR622G1429' => 'tar', 'TAR623G0734' => 'tar', 'TAR625G0441' => 'tar', 'TAR629G0976' => 'tar', 'TAR633G1195' => 'tar', 'TAR636G2660' => 'tar', 'THA.LOC104799440' => 'tha', 'THA.LOC104800966' => 'tha', 'THA.LOC104806559' => 'tha', 'THA.LOC104810765' => 'tha', 'THA.LOC104816266' => 'tha', 'THA.LOC104817419' => 'tha', 'THA.LOC104827021' => 'tha', 'Thecc.01G327400' => 'tca', 'Thecc.04G229200' => 'tca', 'Thecc.05G037400' => 'tca', 'Thecc.09G318600' => 'tca', 'Thecc.09G318700' => 'tca', 'Thhalv10006238m.g' => 'esa', 'Thhalv10014321m.g' => 'esa', 'Thhalv10014335m.g' => 'esa', 'Thhalv10015826m.g' => 'esa', 'Thhalv10017107m.g' => 'esa', 'Thhalv10017180m.g' => 'esa', 'Thhalv10029339m.g' => 'esa', 'TPR.G1699' => 'tpr', 'TPR.G23609' => 'tpr', 'TPR.G3081' => 'tpr', 'TPR.G40397' => 'tpr', 'TPR.G5522' => 'tpr', 'TPR.G5618' => 'tpr', 'TPR.G5626' => 'tpr', 'TWI09G1632' => 'twi', 'TWI23G1230' => 'twi', 'TWI53G1064' => 'twi', 'TWI59G0751' => 'twi', 'TWI74G0947' => 'twi', 'TWI77G0337' => 'twi', 'TWI79G1254' => 'twi', 'unitig_0.g2341' => 'ugi', 'unitig_26.g10006' => 'ugi', 'unitig_26.g10008' => 'ugi', 'unitig_26.g9192' => 'ugi', 'vmacro14547' => 'vma', 'vmacro15333' => 'vma', 'vmacro18743' => 'vma', 'vmacro20166' => 'vma', 'VMungo0331G0523' => 'vmu', 'VMungo0331G1202' => 'vmu', 'VMungo0720G1228' => 'vmu', 'VMungo0720G1514' => 'vmu', 'VMungo1080G0169' => 'vmu', 'VMungo1127G1475' => 'vmu', 'VMungo1383G1208' => 'vmu', 'VMungo1383G1698' => 'vmu', 'Zm00001eb012270' => 'zma', 'Zm00001eb054100' => 'zma', 'Zm00001eb063350' => 'zma', 'Zm00001eb328560' => 'zma', 'Zm00001eb342820' => 'zma', 'Zm00001eb362210' => 'zma', 'Zm00001eb397730' => 'zma', 'Zm00001eb399750' => 'zma' ), 'gf_id' => 'HOM05D000959', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000959' ), 'data_identifier' => 'HOM05D000959', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000959', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '622', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p07100' => 'bna', 'A03p11720' => 'bna', 'A05p08300' => 'bna', 'A05p13380' => 'bna', 'A09p54130' => 'bna', 'A10p16690' => 'bna', 'A10p16700' => 'bna', 'A10p33390' => 'bna', 'Aa31LG10G16020' => 'aar', 'Aa31LG1G11810' => 'aar', 'Aa31LG1G11830' => 'aar', 'Aa31LG1G22510' => 'aar', 'Aa31LG5G4890' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5793' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2310' => 'aag', 'Actinidia08499' => 'ach', 'Actinidia11262' => 'ach', 'Actinidia23926' => 'ach', 'Actinidia34420' => 'ach', 'Actinidia36970' => 'ach', 'Ah.02g111220' => 'amhyb', 'Ah.15g097750' => 'amhyb', 'AL4G27500' => 'aly', 'AL6G11470' => 'aly', 'AL8G35950' => 'aly', 'AL8G35960' => 'aly', 'AL8G35970' => 'aly', 'Aqoxy1G00912' => 'aox', 'Aqoxy2G02253' => 'aox', 'Aqoxy2G02411' => 'aox', 'Aqoxy5G00485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BZ66YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K8ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM4FUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6BF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HFV7XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25JBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0YNNV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MAKK6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P70IT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP2Z6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V61LZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YWP64R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3S9AI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7PGHH' => 'arhy', 'AT2G32150' => 'ath', 'AT3G62040' => 'ath', 'AT5G02230' => 'ath', 'AT5G59480' => 'ath', 'AT5G59490' => 'ath', 'ATR0332G060' => 'atr', 'ATR0559G190' => 'atr', 'ATR0693G294' => 'atr', 'Atru.chr3.3975' => 'acertr', 'Atru.chr3.3976' => 'acertr', 'Atru.chr3.3977' => 'acertr', 'Atru.chr4.2498' => 'acertr', 'Atru.chr5.838' => 'acertr', 'Atru.chr8.1990' => 'acertr', 'Atru.chr8.1991' => 'acertr', 'Atru.chr8.1992' => 'acertr', 'AUR62001759' => 'cqu', 'AUR62009545' => 'cqu', 'AUR62010474' => 'cqu', 'AUR62025820' => 'cqu', 'AUR62030422' => 'cqu', 'AUR62033605' => 'cqu', 'AUR62038615' => 'cqu', 'AUR62041347' => 'cqu', 'BcaB01g04574' => 'bca', 'BcaB02g09263' => 'bca', 'BcaB02g10453' => 'bca', 'BcaB05g22513' => 'bca', 'BcaB08g36253' => 'bca', 'BcaB08g36254' => 'bca', 'BcaC01g06519' => 'bca', 'BcaC02g11889' => 'bca', 'BcaC03g14010' => 'bca', 'BcaC03g18439' => 'bca', 'BcaC04g19765' => 'bca', 'BcaC09g48432' => 'bca', 'BcaNung07302' => 'bca', 'BolC2t06040H' => 'bol', 'BolC2t07346H' => 'bol', 'BolC3t13817H' => 'bol', 'BolC4t22625H' => 'bol', 'BolC4t23297H' => 'bol', 'BolC8t51278H' => 'bol', 'BolC9t58050H' => 'bol', 'BolC9t58051H' => 'bol', 'BolC9t60163H' => 'bol', 'BraA02t04712Z' => 'bra', 'BraA02t05791Z' => 'bra', 'BraA03t10483Z' => 'bra', 'BraA05t19795Z' => 'bra', 'BraA05t20276Z' => 'bra', 'BraA09t40827Z' => 'bra', 'BraA10t43750Z' => 'bra', 'BraA10t43751Z' => 'bra', 'BraA10t45370Z' => 'bra', 'C02p00400' => 'bna', 'C02p12460' => 'bna', 'C03p13680' => 'bna', 'C04p10270' => 'bna', 'C04p17500' => 'bna', 'C08p37010' => 'bna', 'C09p51880' => 'bna', 'C09p51890' => 'bna', 'C09p74300' => 'bna', 'CAN.G179.26' => 'can', 'CAN.G3384.1' => 'can', 'CAN.G394.68' => 'can', 'CAN.G907.13' => 'can', 'CANSAT11G0012' => 'cansat', 'CANSAT25G1586' => 'cansat', 'CANSAT35G0735' => 'cansat', 'CANSAT54G0556' => 'cansat', 'CANSAT64G0356' => 'cansat', 'CANSAT78G2042' => 'cansat', 'CARHR125920' => 'chi', 'CARHR131910' => 'chi', 'CARHR172390' => 'chi', 'CARHR211140' => 'chi', 'CARHR285850' => 'chi', 'CARHR285860' => 'chi', 'Carub.0004s1347' => 'cru', 'Carub.0004s1960' => 'cru', 'Carub.0005s2880' => 'cru', 'Carub.0006s0107' => 'cru', 'Carub.0008s2015' => 'cru', 'Carub.0008s2016' => 'cru', 'Carub.0008s2017' => 'cru', 'Ca_01315_v3' => 'car', 'Ca_05063_v3' => 'car', 'Ca_10231_v3' => 'car', 'Ca_10913_v3' => 'car', 'Ca_19156_v3' => 'car', 'Ca_23644_v3' => 'car', 'Ca_26735_v3' => 'car', 'Cc01_g13130' => 'ccan', 'Cc02_g21690' => 'ccan', 'Cc03_g03600' => 'ccan', 'Cc06_g02510' => 'ccan', 'CDE02G1265' => 'cde', 'CDE05G0415' => 'cde', 'CDE08G1082' => 'cde', 'Cfa005780' => 'cfa', 'Cfa011522' => 'cfa', 'Cfa011523' => 'cfa', 'Cfa015627' => 'cfa', 'Cfa017359' => 'cfa', 'Ciclev10005687m.g' => 'ccl', 'Ciclev10012173m.g' => 'ccl', 'Ciclev10021621m.g' => 'ccl', 'Ciclev10028968m.g' => 'ccl', 'Ciclev10029907m.g' => 'ccl', 'CiPaw.01G164800' => 'cil', 'CiPaw.07G083700' => 'cil', 'CiPaw.07G127000' => 'cil', 'CiPaw.07G136900' => 'cil', 'CiPaw.08G081700' => 'cil', 'CiPaw.09G194600' => 'cil', 'CiPaw.10G146500' => 'cil', 'CiPaw.13G091500' => 'cil', 'CiPaw.13G091600' => 'cil', 'ClCG00G003390' => 'cla', 'ClCG01G007220' => 'cla', 'ClCG03G001370' => 'cla', 'ClCG04G008100' => 'cla', 'ClCG06G006110' => 'cla', 'ClCG06G006130' => 'cla', 'ClCG10G021210' => 'cla', 'COL.COLO4_07648' => 'col', 'COL.COLO4_07650' => 'col', 'COL.COLO4_07651' => 'col', 'COL.COLO4_14780' => 'col', 'COL.COLO4_18546' => 'col', 'COL.COLO4_18547' => 'col', 'COL.COLO4_23103' => 'col', 'COL.COLO4_30419' => 'col', 'COL.COLO4_34232' => 'col', 'Cpa.g.sc169.20' => 'cpa', 'Cpa.g.sc57.45' => 'cpa', 'Cpa.g.sc58.124' => 'cpa', 'Cpa.g.sc58.125' => 'cpa', 'Cpa.g.sc81.118' => 'cpa', 'Cpa.g.sc81.119' => 'cpa', 'Cre12.g524700' => 'cre', 'CsaV3_1G034430' => 'csa', 'CsaV3_1G034440' => 'csa', 'CsaV3_1G034450' => 'csa', 'CsaV3_3G034830' => 'csa', 'CsaV3_4G025090' => 'csa', 'CsaV3_5G018660' => 'csa', 'CsaV3_6G038160' => 'csa', 'CSS0003447' => 'camsi', 'CSS0017840' => 'camsi', 'CSS0019260' => 'camsi', 'CSS0040375' => 'camsi', 'CSS0042533' => 'camsi', 'DCAR_005960' => 'dca', 'DCAR_012104' => 'dca', 'DCAR_012105' => 'dca', 'DCAR_012293' => 'dca', 'DCAR_015632' => 'dca', 'DCAR_024602' => 'dca', 'DCAR_028752' => 'dca', 'Dinv06261' => 'din', 'Dinv13982' => 'din', 'Dinv17029' => 'din', 'Dinv18463' => 'din', 'Dinv33181' => 'din', 'Dinv35585' => 'din', 'Dinv37161' => 'din', 'Dinv42977' => 'din', 'Dinv43122' => 'din', 'Dinv44517' => 'din', 'Duzib093G0256' => 'dzi', 'Duzib106G1254' => 'dzi', 'Duzib128G1789' => 'dzi', 'Duzib133G0633' => 'dzi', 'Duzib138G0510' => 'dzi', 'Duzib150G1084' => 'dzi', 'Duzib168G0488' => 'dzi', 'Duzib168G1523' => 'dzi', 'Duzib170G0133' => 'dzi', 'ECA234G1433' => 'eca', 'ECA236G1432' => 'eca', 'ECA236G2256' => 'eca', 'ECA236G2365' => 'eca', 'ECA236G4830' => 'eca', 'ECA248G1505' => 'eca', 'EL10Ac3g06431' => 'bvu', 'EL10Ac5g12577' => 'bvu', 'EL10Ac6g13533' => 'bvu', 'EL10Ac7g16045' => 'bvu', 'Eucgr.A01281' => 'egr', 'Eucgr.B02326' => 'egr', 'Eucgr.H03532' => 'egr', 'Eucgr.K00553' => 'egr', 'Eucgr.K03116' => 'egr', 'FAN02G3963' => 'fan', 'FAN05G0438' => 'fan', 'FAN09G2434' => 'fan', 'FAN12G3984' => 'fan', 'FAN14G0798' => 'fan', 'FAN17G0652' => 'fan', 'FAN19G1988' => 'fan', 'FAN22G0632' => 'fan', 'FAN23G0387' => 'fan', 'FAN26G1323' => 'fan', 'FAN28G0666' => 'fan', 'FvH4_1g26080' => 'fve', 'FvH4_3g36780' => 'fve', 'FvH4_4g15270' => 'fve', 'FvH4_6g13490' => 'fve', 'Glyma.01G098700' => 'gma', 'Glyma.03G065900' => 'gma', 'Glyma.03G073754' => 'gma', 'Glyma.03G073758' => 'gma', 'Glyma.03G083200' => 'gma', 'Glyma.03G225500' => 'gma', 'Glyma.05G037766' => 'gma', 'Glyma.07G133500' => 'gma', 'Glyma.10G139400' => 'gma', 'Glyma.10G248900' => 'gma', 'Glyma.11G137800' => 'gma', 'Glyma.12G061300' => 'gma', 'Glyma.13G337900' => 'gma', 'Glyma.15G036600' => 'gma', 'Glyma.18G182800' => 'gma', 'Glyma.19G222500' => 'gma', 'Glyma.20G144800' => 'gma', 'Gohir.A01G222000' => 'ghi', 'Gohir.A03G044000' => 'ghi', 'Gohir.A03G044100' => 'ghi', 'Gohir.A04G083100' => 'ghi', 'Gohir.A07G127200' => 'ghi', 'Gohir.A07G132400' => 'ghi', 'Gohir.A08G000700' => 'ghi', 'Gohir.A11G327300' => 'ghi', 'Gohir.D01G211500' => 'ghi', 'Gohir.D03G123400' => 'ghi', 'Gohir.D03G123500' => 'ghi', 'Gohir.D04G121800' => 'ghi', 'Gohir.D07G131500' => 'ghi', 'Gohir.D07G136600' => 'ghi', 'Gohir.D08G011600' => 'ghi', 'Gohir.D11G346200' => 'ghi', 'Gorai.001G142800' => 'gra', 'Gorai.001G148700' => 'gra', 'Gorai.002G257300' => 'gra', 'Gorai.003G130000' => 'gra', 'Gorai.003G130100' => 'gra', 'Gorai.004G005300' => 'gra', 'Gorai.007G376500' => 'gra', 'Gorai.012G104700' => 'gra', 'GSVIVG01017946001' => 'vvi', 'GSVIVG01024928001' => 'vvi', 'GSVIVG01028227001' => 'vvi', 'GSVIVG01034151001' => 'vvi', 'HanXRQChr05g0135031' => 'han', 'HanXRQChr05g0135041' => 'han', 'HanXRQChr05g0140021' => 'han', 'HanXRQChr06g0178981' => 'han', 'HanXRQChr07g0188251' => 'han', 'HanXRQChr08g0235311' => 'han', 'HanXRQChr09g0271011' => 'han', 'HanXRQChr10g0293321' => 'han', 'HanXRQChr13g0388171' => 'han', 'Haze_00916' => 'cav', 'Haze_05063' => 'cav', 'Haze_20814' => 'cav', 'Haze_24128' => 'cav', 'Hma1.2p1_0745F.1_g212010' => 'hma', 'Hma1.2p1_0757F.1_g213260' => 'hma', 'Hma1.2p1_0936F.1_g238840' => 'hma', 'Hma1.2p1_1735F.1_g299890' => 'hma', 'Hma1.2p1_1861F.1_g305685' => 'hma', 'HPP92_003397' => 'vpl', 'HPP92_012597' => 'vpl', 'HPP92_015520' => 'vpl', 'HPP92_015539' => 'vpl', 'HPP92_020373' => 'vpl', 'Hund04938' => 'sun', 'Hund10677' => 'sun', 'Hund11033' => 'sun', 'Hund12155' => 'sun', 'Lalb_Chr01g0022551' => 'lal', 'Lalb_Chr03g0042341' => 'lal', 'Lalb_Chr07g0192931' => 'lal', 'Lalb_Chr12g0209551' => 'lal', 'Lalb_Chr19g0125251' => 'lal', 'Lalb_Chr19g0137891' => 'lal', 'Lalb_Chr21g0304641' => 'lal', 'Lalb_Chr21g0309881' => 'lal', 'Lj1A5T12' => 'lonja', 'Lj1C148G10' => 'lonja', 'Lj2A93T83' => 'lonja', 'Lj3A738G68' => 'lonja', 'Lj3C966T1' => 'lonja', 'Lj3g0018958' => 'lja', 'Lj3g0021831' => 'lja', 'Lj3g0025443' => 'lja', 'Lj4g0026809' => 'lja', 'Lj5g0012558' => 'lja', 'Lj5g0021586' => 'lja', 'Lsat_1_v5_gn_5_156840' => 'lsa', 'Lsat_1_v5_gn_8_73460' => 'lsa', 'Lsat_1_v5_gn_8_73481' => 'lsa', 'Lsat_1_v5_gn_9_31601' => 'lsa', 'Lsat_1_v5_gn_9_77320' => 'lsa', 'Manes.01G171300' => 'mes', 'Manes.01G171400' => 'mes', 'Manes.01G236100' => 'mes', 'Manes.02G130500' => 'mes', 'Manes.02G130600' => 'mes', 'Manes.03G180200' => 'mes', 'Manes.05G007000' => 'mes', 'Manes.08G084400' => 'mes', 'Manes.09G092600' => 'mes', 'Manes.15G027900' => 'mes', 'MBI04_g40948_MAGBIO' => 'mbi', 'MBI14_g12123_MAGBIO' => 'mbi', 'MBI18_g28915_MAGBIO' => 'mbi', 'MCO09G053' => 'mco', 'MCO11G782' => 'mco', 'MCO15G215' => 'mco', 'MD03G1088500' => 'mdo', 'MD03G1088600' => 'mdo', 'MD04G1130800' => 'mdo', 'MD09G1291700' => 'mdo', 'MD11G1097500' => 'mdo', 'MD11G1097600' => 'mdo', 'MD12G1143900' => 'mdo', 'MD13G1191400' => 'mdo', 'MD16G1191500' => 'mdo', 'Medtr1g085570' => 'mtr', 'Medtr1g104610' => 'mtr', 'Medtr2g097520' => 'mtr', 'Medtr4g021800' => 'mtr', 'Medtr4g021825' => 'mtr', 'Medtr4g064270' => 'mtr', 'Medtr4g064380' => 'mtr', 'Medtr7g062150' => 'mtr', 'MELO3C003138.2' => 'cme', 'MELO3C005187.2' => 'cme', 'MELO3C009252.2' => 'cme', 'MELO3C014481.2' => 'cme', 'MELO3C020616.2' => 'cme', 'MELO3C020617.2' => 'cme', 'MELO3C020618.2' => 'cme', 'Migut.G00328' => 'egut', 'Migut.J00320' => 'egut', 'Migut.L01000' => 'egut', 'Migut.L01953' => 'egut', 'MSTRG.10253' => 'ama', 'MSTRG.19077' => 'ama', 'MSTRG.26780' => 'ama', 'MSTRG.4023' => 'ama', 'MSTRG.5655' => 'ama', 'MSTRG.9992' => 'ama', 'Nitab4.5_0000043g0310' => 'nta', 'Nitab4.5_0000463g0080' => 'nta', 'Nitab4.5_0000705g0170' => 'nta', 'Nitab4.5_0001326g0060' => 'nta', 'Nitab4.5_0001628g0030' => 'nta', 'Nitab4.5_0002103g0110' => 'nta', 'Nitab4.5_0002946g0030' => 'nta', 'Nitab4.5_0004639g0030' => 'nta', 'Nn2g11149' => 'nnu', 'Nn2g13389' => 'nnu', 'Nn4g25326' => 'nnu', 'Nn4g26290' => 'nnu', 'Nn5g29865' => 'nnu', 'Oeu004163.1' => 'oeu', 'Oeu006901.1' => 'oeu', 'Oeu010096.1' => 'oeu', 'Oeu024340.1' => 'oeu', 'Oeu048369.1' => 'oeu', 'Os01g0973000' => 'osa', 'Os03g0273800' => 'osa', 'Os03g0701200' => 'osa', 'Os03g0834050' => 'osa', 'Os07g0634400' => 'osa', 'Peaxi162Scf00092g01414' => 'pax', 'Peaxi162Scf00165g00818' => 'pax', 'Peaxi162Scf00309g00516' => 'pax', 'Peaxi162Scf00774g00218' => 'pax', 'PGR004G1824' => 'pgr', 'PGR004G2606' => 'pgr', 'PGR031G2716' => 'pgr', 'PGR102G2460' => 'pgr', 'PGR142G2599' => 'pgr', 'PGSC0003DMG400000843' => 'stu', 'PGSC0003DMG400008829' => 'stu', 'PGSC0003DMG400030418' => 'stu', 'PGSC0003DMG400031834' => 'stu', 'PGSC0003DMG401028300' => 'stu', 'PGSC0003DMG402028300' => 'stu', 'Phvul.001G219300' => 'pvu', 'Phvul.007G056000' => 'pvu', 'Phvul.007G208000' => 'pvu', 'Phvul.008G119500' => 'pvu', 'Phvul.010G011200' => 'pvu', 'Phvul.010G014800' => 'pvu', 'Phvul.011G062900' => 'pvu', 'Phvul.L007043' => 'pvu', 'Potri.001G242300' => 'ptr', 'Potri.002G185300' => 'ptr', 'Potri.006G086900' => 'ptr', 'Potri.008G151700' => 'ptr', 'Potri.009G033500' => 'ptr', 'Potri.010G089300' => 'ptr', 'Potri.014G110800' => 'ptr', 'Pp3c27_8130' => 'ppa', 'Pp3c6_27410' => 'ppa', 'PRCOL_00001659' => 'pco', 'PRCOL_00001927' => 'pco', 'PRCOL_00003649' => 'pco', 'Prupe.1G011600' => 'ppe', 'Prupe.3G000800' => 'ppe', 'Prupe.3G001100' => 'ppe', 'Prupe.6G072700' => 'ppe', 'Prupe.6G072800' => 'ppe', 'Prupe.6G257300' => 'ppe', 'Prupe.8G033000' => 'ppe', 'Psat0s2633g0080' => 'psa', 'Psat0s3396g0080' => 'psa', 'Psat0s3396g0200' => 'psa', 'Psat3g139080' => 'psa', 'Psat5g285080' => 'psa', 'Psat6g157760' => 'psa', 'Psat6g208440' => 'psa', 'Psat7g215320' => 'psa', 'Psat7g215400' => 'psa', 'Psat7g235600' => 'psa', 'Psat7g235760' => 'psa', 'PSO063G4603' => 'pso', 'PSO210G0182' => 'pso', 'PSO210G0196' => 'pso', 'PSO339G0394' => 'pso', 'PSO339G4127' => 'pso', 'PSO513G0064' => 'pso', 'PSO761G0079' => 'pso', 'QL01p031003' => 'qlo', 'QL01p031078' => 'qlo', 'QL06p003004' => 'qlo', 'QL07p048731' => 'qlo', 'QL09p037427' => 'qlo', 'RcHm_v2.0_Chr3g0466361' => 'rch', 'RcHm_v2.0_Chr3g0485571' => 'rch', 'RcHm_v2.0_Chr4g0416551' => 'rch', 'RcHm_v2.0_Chr5g0065831' => 'rch', 'Rhsim01G0230500' => 'rsi', 'Rhsim05G0194000' => 'rsi', 'Rhsim08G0250400' => 'rsi', 'Sabra02G0131000' => 'sbr', 'Sabra06G0066300' => 'sbr', 'Sabra08G0115500' => 'sbr', 'Sabra09G0023900' => 'sbr', 'Sabra10G0054000' => 'sbr', 'Sabra14G0081500' => 'sbr', 'Sabra16G0147100' => 'sbr', 'SalBow2G2957' => 'sbo', 'SalBow4G3320' => 'sbo', 'SalBow8G1894' => 'sbo', 'Sc07g0007950' => 'sci', 'Sc12g0001360' => 'sci', 'Sc13g0004330' => 'sci', 'Sc20g0005010' => 'sci', 'Sed0000361' => 'sed', 'Sed0001706' => 'sed', 'Sed0002422' => 'sed', 'Sed0004029' => 'sed', 'Sed0004602' => 'sed', 'Sed0004943' => 'sed', 'Sed0008646' => 'sed', 'Sed0023313' => 'sed', 'Sed0024843' => 'sed', 'SEGI_00081' => 'sgi', 'SEGI_00947' => 'sgi', 'SEGI_04046' => 'sgi', 'SEGI_06880' => 'sgi', 'SEGI_09736' => 'sgi', 'SEGI_12741' => 'sgi', 'SEGI_14530' => 'sgi', 'SEGI_20705' => 'sgi', 'SEGI_26088' => 'sgi', 'SEGI_28323' => 'sgi', 'SEGI_33343' => 'sgi', 'SGA_v2.0_scaffold126G33775' => 'sas', 'SGA_v2.0_scaffold2G01337' => 'sas', 'SGA_v2.0_scaffold38G15006' => 'sas', 'SGA_v2.0_scaffold39G15264' => 'sas', 'SGA_v2.0_scaffold453G51880' => 'sas', 'SHI12696' => 'shi', 'SMO367G1096' => 'smo', 'Solyc01g068630.3' => 'sly', 'Solyc05g011880.3' => 'sly', 'Solyc06g076300.3' => 'sly', 'Solyc09g010940.4' => 'sly', 'Solyc09g075890.3' => 'sly', 'Sopen01g030560' => 'spe', 'Sopen05g006630' => 'spe', 'Sopen06g032720' => 'spe', 'Sopen09g005660' => 'spe', 'Sopen09g030690' => 'spe', 'Sp4g14540' => 'spa', 'Sp4g20030' => 'spa', 'Sp5g01320' => 'spa', 'Sp6g21170' => 'spa', 'Sp6g21180' => 'spa', 'Sp6g21190' => 'spa', 'Sp6g40220' => 'spa', 'TAR362G0122' => 'tar', 'TAR362G1338' => 'tar', 'TAR369G0590' => 'tar', 'TAR371G0824' => 'tar', 'TAR622G1429' => 'tar', 'TAR623G0734' => 'tar', 'TAR625G0441' => 'tar', 'TAR629G0976' => 'tar', 'TAR633G1195' => 'tar', 'TAR636G2660' => 'tar', 'THA.LOC104799440' => 'tha', 'THA.LOC104800966' => 'tha', 'THA.LOC104806559' => 'tha', 'THA.LOC104810765' => 'tha', 'THA.LOC104816266' => 'tha', 'THA.LOC104817419' => 'tha', 'THA.LOC104827021' => 'tha', 'Thecc.01G327400' => 'tca', 'Thecc.04G229200' => 'tca', 'Thecc.05G037400' => 'tca', 'Thecc.09G318600' => 'tca', 'Thecc.09G318700' => 'tca', 'Thhalv10006238m.g' => 'esa', 'Thhalv10014321m.g' => 'esa', 'Thhalv10014335m.g' => 'esa', 'Thhalv10015826m.g' => 'esa', 'Thhalv10017107m.g' => 'esa', 'Thhalv10017180m.g' => 'esa', 'Thhalv10029339m.g' => 'esa', 'TPR.G1699' => 'tpr', 'TPR.G23609' => 'tpr', 'TPR.G3081' => 'tpr', 'TPR.G40397' => 'tpr', 'TPR.G5522' => 'tpr', 'TPR.G5618' => 'tpr', 'TPR.G5626' => 'tpr', 'TWI09G1632' => 'twi', 'TWI23G1230' => 'twi', 'TWI53G1064' => 'twi', 'TWI59G0751' => 'twi', 'TWI74G0947' => 'twi', 'TWI77G0337' => 'twi', 'TWI79G1254' => 'twi', 'unitig_0.g2341' => 'ugi', 'unitig_26.g10006' => 'ugi', 'unitig_26.g10008' => 'ugi', 'unitig_26.g9192' => 'ugi', 'vmacro14547' => 'vma', 'vmacro15333' => 'vma', 'vmacro18743' => 'vma', 'vmacro20166' => 'vma', 'VMungo0331G0523' => 'vmu', 'VMungo0331G1202' => 'vmu', 'VMungo0720G1228' => 'vmu', 'VMungo0720G1514' => 'vmu', 'VMungo1080G0169' => 'vmu', 'VMungo1127G1475' => 'vmu', 'VMungo1383G1208' => 'vmu', 'VMungo1383G1698' => 'vmu', 'Zm00001eb012270' => 'zma', 'Zm00001eb054100' => 'zma', 'Zm00001eb063350' => 'zma', 'Zm00001eb328560' => 'zma', 'Zm00001eb342820' => 'zma', 'Zm00001eb362210' => 'zma', 'Zm00001eb397730' => 'zma', 'Zm00001eb399750' => 'zma' ) $gf_id = 'HOM05D000959' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000959' ) $data_identifier = 'HOM05D000959' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 5, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 5, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 10, 'mbi' => (int) 3, 'mco' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 2, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 3, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 11, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399750' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000959', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '622', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p07100' => 'bna', 'A03p11720' => 'bna', 'A05p08300' => 'bna', 'A05p13380' => 'bna', 'A09p54130' => 'bna', 'A10p16690' => 'bna', 'A10p16700' => 'bna', 'A10p33390' => 'bna', 'Aa31LG10G16020' => 'aar', 'Aa31LG1G11810' => 'aar', 'Aa31LG1G11830' => 'aar', 'Aa31LG1G22510' => 'aar', 'Aa31LG5G4890' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5793' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2310' => 'aag', 'Actinidia08499' => 'ach', 'Actinidia11262' => 'ach', 'Actinidia23926' => 'ach', 'Actinidia34420' => 'ach', 'Actinidia36970' => 'ach', 'Ah.02g111220' => 'amhyb', 'Ah.15g097750' => 'amhyb', 'AL4G27500' => 'aly', 'AL6G11470' => 'aly', 'AL8G35950' => 'aly', 'AL8G35960' => 'aly', 'AL8G35970' => 'aly', 'Aqoxy1G00912' => 'aox', 'Aqoxy2G02253' => 'aox', 'Aqoxy2G02411' => 'aox', 'Aqoxy5G00485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BZ66YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K8ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM4FUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6BF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HFV7XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25JBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0YNNV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MAKK6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P70IT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP2Z6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V61LZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YWP64R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3S9AI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7PGHH' => 'arhy', 'AT2G32150' => 'ath', 'AT3G62040' => 'ath', 'AT5G02230' => 'ath', 'AT5G59480' => 'ath', 'AT5G59490' => 'ath', 'ATR0332G060' => 'atr', 'ATR0559G190' => 'atr', 'ATR0693G294' => 'atr', 'Atru.chr3.3975' => 'acertr', 'Atru.chr3.3976' => 'acertr', 'Atru.chr3.3977' => 'acertr', 'Atru.chr4.2498' => 'acertr', 'Atru.chr5.838' => 'acertr', 'Atru.chr8.1990' => 'acertr', 'Atru.chr8.1991' => 'acertr', 'Atru.chr8.1992' => 'acertr', 'AUR62001759' => 'cqu', 'AUR62009545' => 'cqu', 'AUR62010474' => 'cqu', 'AUR62025820' => 'cqu', 'AUR62030422' => 'cqu', 'AUR62033605' => 'cqu', 'AUR62038615' => 'cqu', 'AUR62041347' => 'cqu', 'BcaB01g04574' => 'bca', 'BcaB02g09263' => 'bca', 'BcaB02g10453' => 'bca', 'BcaB05g22513' => 'bca', 'BcaB08g36253' => 'bca', 'BcaB08g36254' => 'bca', 'BcaC01g06519' => 'bca', 'BcaC02g11889' => 'bca', 'BcaC03g14010' => 'bca', 'BcaC03g18439' => 'bca', 'BcaC04g19765' => 'bca', 'BcaC09g48432' => 'bca', 'BcaNung07302' => 'bca', 'BolC2t06040H' => 'bol', 'BolC2t07346H' => 'bol', 'BolC3t13817H' => 'bol', 'BolC4t22625H' => 'bol', 'BolC4t23297H' => 'bol', 'BolC8t51278H' => 'bol', 'BolC9t58050H' => 'bol', 'BolC9t58051H' => 'bol', 'BolC9t60163H' => 'bol', 'BraA02t04712Z' => 'bra', 'BraA02t05791Z' => 'bra', 'BraA03t10483Z' => 'bra', 'BraA05t19795Z' => 'bra', 'BraA05t20276Z' => 'bra', 'BraA09t40827Z' => 'bra', 'BraA10t43750Z' => 'bra', 'BraA10t43751Z' => 'bra', 'BraA10t45370Z' => 'bra', 'C02p00400' => 'bna', 'C02p12460' => 'bna', 'C03p13680' => 'bna', 'C04p10270' => 'bna', 'C04p17500' => 'bna', 'C08p37010' => 'bna', 'C09p51880' => 'bna', 'C09p51890' => 'bna', 'C09p74300' => 'bna', 'CAN.G179.26' => 'can', 'CAN.G3384.1' => 'can', 'CAN.G394.68' => 'can', 'CAN.G907.13' => 'can', 'CANSAT11G0012' => 'cansat', 'CANSAT25G1586' => 'cansat', 'CANSAT35G0735' => 'cansat', 'CANSAT54G0556' => 'cansat', 'CANSAT64G0356' => 'cansat', 'CANSAT78G2042' => 'cansat', 'CARHR125920' => 'chi', 'CARHR131910' => 'chi', 'CARHR172390' => 'chi', 'CARHR211140' => 'chi', 'CARHR285850' => 'chi', 'CARHR285860' => 'chi', 'Carub.0004s1347' => 'cru', 'Carub.0004s1960' => 'cru', 'Carub.0005s2880' => 'cru', 'Carub.0006s0107' => 'cru', 'Carub.0008s2015' => 'cru', 'Carub.0008s2016' => 'cru', 'Carub.0008s2017' => 'cru', 'Ca_01315_v3' => 'car', 'Ca_05063_v3' => 'car', 'Ca_10231_v3' => 'car', 'Ca_10913_v3' => 'car', 'Ca_19156_v3' => 'car', 'Ca_23644_v3' => 'car', 'Ca_26735_v3' => 'car', 'Cc01_g13130' => 'ccan', 'Cc02_g21690' => 'ccan', 'Cc03_g03600' => 'ccan', 'Cc06_g02510' => 'ccan', 'CDE02G1265' => 'cde', 'CDE05G0415' => 'cde', 'CDE08G1082' => 'cde', 'Cfa005780' => 'cfa', 'Cfa011522' => 'cfa', 'Cfa011523' => 'cfa', 'Cfa015627' => 'cfa', 'Cfa017359' => 'cfa', 'Ciclev10005687m.g' => 'ccl', 'Ciclev10012173m.g' => 'ccl', 'Ciclev10021621m.g' => 'ccl', 'Ciclev10028968m.g' => 'ccl', 'Ciclev10029907m.g' => 'ccl', 'CiPaw.01G164800' => 'cil', 'CiPaw.07G083700' => 'cil', 'CiPaw.07G127000' => 'cil', 'CiPaw.07G136900' => 'cil', 'CiPaw.08G081700' => 'cil', 'CiPaw.09G194600' => 'cil', 'CiPaw.10G146500' => 'cil', 'CiPaw.13G091500' => 'cil', 'CiPaw.13G091600' => 'cil', 'ClCG00G003390' => 'cla', 'ClCG01G007220' => 'cla', 'ClCG03G001370' => 'cla', 'ClCG04G008100' => 'cla', 'ClCG06G006110' => 'cla', 'ClCG06G006130' => 'cla', 'ClCG10G021210' => 'cla', 'COL.COLO4_07648' => 'col', 'COL.COLO4_07650' => 'col', 'COL.COLO4_07651' => 'col', 'COL.COLO4_14780' => 'col', 'COL.COLO4_18546' => 'col', 'COL.COLO4_18547' => 'col', 'COL.COLO4_23103' => 'col', 'COL.COLO4_30419' => 'col', 'COL.COLO4_34232' => 'col', 'Cpa.g.sc169.20' => 'cpa', 'Cpa.g.sc57.45' => 'cpa', 'Cpa.g.sc58.124' => 'cpa', 'Cpa.g.sc58.125' => 'cpa', 'Cpa.g.sc81.118' => 'cpa', 'Cpa.g.sc81.119' => 'cpa', 'Cre12.g524700' => 'cre', 'CsaV3_1G034430' => 'csa', 'CsaV3_1G034440' => 'csa', 'CsaV3_1G034450' => 'csa', 'CsaV3_3G034830' => 'csa', 'CsaV3_4G025090' => 'csa', 'CsaV3_5G018660' => 'csa', 'CsaV3_6G038160' => 'csa', 'CSS0003447' => 'camsi', 'CSS0017840' => 'camsi', 'CSS0019260' => 'camsi', 'CSS0040375' => 'camsi', 'CSS0042533' => 'camsi', 'DCAR_005960' => 'dca', 'DCAR_012104' => 'dca', 'DCAR_012105' => 'dca', 'DCAR_012293' => 'dca', 'DCAR_015632' => 'dca', 'DCAR_024602' => 'dca', 'DCAR_028752' => 'dca', 'Dinv06261' => 'din', 'Dinv13982' => 'din', 'Dinv17029' => 'din', 'Dinv18463' => 'din', 'Dinv33181' => 'din', 'Dinv35585' => 'din', 'Dinv37161' => 'din', 'Dinv42977' => 'din', 'Dinv43122' => 'din', 'Dinv44517' => 'din', 'Duzib093G0256' => 'dzi', 'Duzib106G1254' => 'dzi', 'Duzib128G1789' => 'dzi', 'Duzib133G0633' => 'dzi', 'Duzib138G0510' => 'dzi', 'Duzib150G1084' => 'dzi', 'Duzib168G0488' => 'dzi', 'Duzib168G1523' => 'dzi', 'Duzib170G0133' => 'dzi', 'ECA234G1433' => 'eca', 'ECA236G1432' => 'eca', 'ECA236G2256' => 'eca', 'ECA236G2365' => 'eca', 'ECA236G4830' => 'eca', 'ECA248G1505' => 'eca', 'EL10Ac3g06431' => 'bvu', 'EL10Ac5g12577' => 'bvu', 'EL10Ac6g13533' => 'bvu', 'EL10Ac7g16045' => 'bvu', 'Eucgr.A01281' => 'egr', 'Eucgr.B02326' => 'egr', 'Eucgr.H03532' => 'egr', 'Eucgr.K00553' => 'egr', 'Eucgr.K03116' => 'egr', 'FAN02G3963' => 'fan', 'FAN05G0438' => 'fan', 'FAN09G2434' => 'fan', 'FAN12G3984' => 'fan', 'FAN14G0798' => 'fan', 'FAN17G0652' => 'fan', 'FAN19G1988' => 'fan', 'FAN22G0632' => 'fan', 'FAN23G0387' => 'fan', 'FAN26G1323' => 'fan', 'FAN28G0666' => 'fan', 'FvH4_1g26080' => 'fve', 'FvH4_3g36780' => 'fve', 'FvH4_4g15270' => 'fve', 'FvH4_6g13490' => 'fve', 'Glyma.01G098700' => 'gma', 'Glyma.03G065900' => 'gma', 'Glyma.03G073754' => 'gma', 'Glyma.03G073758' => 'gma', 'Glyma.03G083200' => 'gma', 'Glyma.03G225500' => 'gma', 'Glyma.05G037766' => 'gma', 'Glyma.07G133500' => 'gma', 'Glyma.10G139400' => 'gma', 'Glyma.10G248900' => 'gma', 'Glyma.11G137800' => 'gma', 'Glyma.12G061300' => 'gma', 'Glyma.13G337900' => 'gma', 'Glyma.15G036600' => 'gma', 'Glyma.18G182800' => 'gma', 'Glyma.19G222500' => 'gma', 'Glyma.20G144800' => 'gma', 'Gohir.A01G222000' => 'ghi', 'Gohir.A03G044000' => 'ghi', 'Gohir.A03G044100' => 'ghi', 'Gohir.A04G083100' => 'ghi', 'Gohir.A07G127200' => 'ghi', 'Gohir.A07G132400' => 'ghi', 'Gohir.A08G000700' => 'ghi', 'Gohir.A11G327300' => 'ghi', 'Gohir.D01G211500' => 'ghi', 'Gohir.D03G123400' => 'ghi', 'Gohir.D03G123500' => 'ghi', 'Gohir.D04G121800' => 'ghi', 'Gohir.D07G131500' => 'ghi', 'Gohir.D07G136600' => 'ghi', 'Gohir.D08G011600' => 'ghi', 'Gohir.D11G346200' => 'ghi', 'Gorai.001G142800' => 'gra', 'Gorai.001G148700' => 'gra', 'Gorai.002G257300' => 'gra', 'Gorai.003G130000' => 'gra', 'Gorai.003G130100' => 'gra', 'Gorai.004G005300' => 'gra', 'Gorai.007G376500' => 'gra', 'Gorai.012G104700' => 'gra', 'GSVIVG01017946001' => 'vvi', 'GSVIVG01024928001' => 'vvi', 'GSVIVG01028227001' => 'vvi', 'GSVIVG01034151001' => 'vvi', 'HanXRQChr05g0135031' => 'han', 'HanXRQChr05g0135041' => 'han', 'HanXRQChr05g0140021' => 'han', 'HanXRQChr06g0178981' => 'han', 'HanXRQChr07g0188251' => 'han', 'HanXRQChr08g0235311' => 'han', 'HanXRQChr09g0271011' => 'han', 'HanXRQChr10g0293321' => 'han', 'HanXRQChr13g0388171' => 'han', 'Haze_00916' => 'cav', 'Haze_05063' => 'cav', 'Haze_20814' => 'cav', 'Haze_24128' => 'cav', 'Hma1.2p1_0745F.1_g212010' => 'hma', 'Hma1.2p1_0757F.1_g213260' => 'hma', 'Hma1.2p1_0936F.1_g238840' => 'hma', 'Hma1.2p1_1735F.1_g299890' => 'hma', 'Hma1.2p1_1861F.1_g305685' => 'hma', 'HPP92_003397' => 'vpl', 'HPP92_012597' => 'vpl', 'HPP92_015520' => 'vpl', 'HPP92_015539' => 'vpl', 'HPP92_020373' => 'vpl', 'Hund04938' => 'sun', 'Hund10677' => 'sun', 'Hund11033' => 'sun', 'Hund12155' => 'sun', 'Lalb_Chr01g0022551' => 'lal', 'Lalb_Chr03g0042341' => 'lal', 'Lalb_Chr07g0192931' => 'lal', 'Lalb_Chr12g0209551' => 'lal', 'Lalb_Chr19g0125251' => 'lal', 'Lalb_Chr19g0137891' => 'lal', 'Lalb_Chr21g0304641' => 'lal', 'Lalb_Chr21g0309881' => 'lal', 'Lj1A5T12' => 'lonja', 'Lj1C148G10' => 'lonja', 'Lj2A93T83' => 'lonja', 'Lj3A738G68' => 'lonja', 'Lj3C966T1' => 'lonja', 'Lj3g0018958' => 'lja', 'Lj3g0021831' => 'lja', 'Lj3g0025443' => 'lja', 'Lj4g0026809' => 'lja', 'Lj5g0012558' => 'lja', 'Lj5g0021586' => 'lja', 'Lsat_1_v5_gn_5_156840' => 'lsa', 'Lsat_1_v5_gn_8_73460' => 'lsa', 'Lsat_1_v5_gn_8_73481' => 'lsa', 'Lsat_1_v5_gn_9_31601' => 'lsa', 'Lsat_1_v5_gn_9_77320' => 'lsa', 'Manes.01G171300' => 'mes', 'Manes.01G171400' => 'mes', 'Manes.01G236100' => 'mes', 'Manes.02G130500' => 'mes', 'Manes.02G130600' => 'mes', 'Manes.03G180200' => 'mes', 'Manes.05G007000' => 'mes', 'Manes.08G084400' => 'mes', 'Manes.09G092600' => 'mes', 'Manes.15G027900' => 'mes', 'MBI04_g40948_MAGBIO' => 'mbi', 'MBI14_g12123_MAGBIO' => 'mbi', 'MBI18_g28915_MAGBIO' => 'mbi', 'MCO09G053' => 'mco', 'MCO11G782' => 'mco', 'MCO15G215' => 'mco', 'MD03G1088500' => 'mdo', 'MD03G1088600' => 'mdo', 'MD04G1130800' => 'mdo', 'MD09G1291700' => 'mdo', 'MD11G1097500' => 'mdo', 'MD11G1097600' => 'mdo', 'MD12G1143900' => 'mdo', 'MD13G1191400' => 'mdo', 'MD16G1191500' => 'mdo', 'Medtr1g085570' => 'mtr', 'Medtr1g104610' => 'mtr', 'Medtr2g097520' => 'mtr', 'Medtr4g021800' => 'mtr', 'Medtr4g021825' => 'mtr', 'Medtr4g064270' => 'mtr', 'Medtr4g064380' => 'mtr', 'Medtr7g062150' => 'mtr', 'MELO3C003138.2' => 'cme', 'MELO3C005187.2' => 'cme', 'MELO3C009252.2' => 'cme', 'MELO3C014481.2' => 'cme', 'MELO3C020616.2' => 'cme', 'MELO3C020617.2' => 'cme', 'MELO3C020618.2' => 'cme', 'Migut.G00328' => 'egut', 'Migut.J00320' => 'egut', 'Migut.L01000' => 'egut', 'Migut.L01953' => 'egut', 'MSTRG.10253' => 'ama', 'MSTRG.19077' => 'ama', 'MSTRG.26780' => 'ama', 'MSTRG.4023' => 'ama', 'MSTRG.5655' => 'ama', 'MSTRG.9992' => 'ama', 'Nitab4.5_0000043g0310' => 'nta', 'Nitab4.5_0000463g0080' => 'nta', 'Nitab4.5_0000705g0170' => 'nta', 'Nitab4.5_0001326g0060' => 'nta', 'Nitab4.5_0001628g0030' => 'nta', 'Nitab4.5_0002103g0110' => 'nta', 'Nitab4.5_0002946g0030' => 'nta', 'Nitab4.5_0004639g0030' => 'nta', 'Nn2g11149' => 'nnu', 'Nn2g13389' => 'nnu', 'Nn4g25326' => 'nnu', 'Nn4g26290' => 'nnu', 'Nn5g29865' => 'nnu', 'Oeu004163.1' => 'oeu', 'Oeu006901.1' => 'oeu', 'Oeu010096.1' => 'oeu', 'Oeu024340.1' => 'oeu', 'Oeu048369.1' => 'oeu', 'Os01g0973000' => 'osa', 'Os03g0273800' => 'osa', 'Os03g0701200' => 'osa', 'Os03g0834050' => 'osa', 'Os07g0634400' => 'osa', 'Peaxi162Scf00092g01414' => 'pax', 'Peaxi162Scf00165g00818' => 'pax', 'Peaxi162Scf00309g00516' => 'pax', 'Peaxi162Scf00774g00218' => 'pax', 'PGR004G1824' => 'pgr', 'PGR004G2606' => 'pgr', 'PGR031G2716' => 'pgr', 'PGR102G2460' => 'pgr', 'PGR142G2599' => 'pgr', 'PGSC0003DMG400000843' => 'stu', 'PGSC0003DMG400008829' => 'stu', 'PGSC0003DMG400030418' => 'stu', 'PGSC0003DMG400031834' => 'stu', 'PGSC0003DMG401028300' => 'stu', 'PGSC0003DMG402028300' => 'stu', 'Phvul.001G219300' => 'pvu', 'Phvul.007G056000' => 'pvu', 'Phvul.007G208000' => 'pvu', 'Phvul.008G119500' => 'pvu', 'Phvul.010G011200' => 'pvu', 'Phvul.010G014800' => 'pvu', 'Phvul.011G062900' => 'pvu', 'Phvul.L007043' => 'pvu', 'Potri.001G242300' => 'ptr', 'Potri.002G185300' => 'ptr', 'Potri.006G086900' => 'ptr', 'Potri.008G151700' => 'ptr', 'Potri.009G033500' => 'ptr', 'Potri.010G089300' => 'ptr', 'Potri.014G110800' => 'ptr', 'Pp3c27_8130' => 'ppa', 'Pp3c6_27410' => 'ppa', 'PRCOL_00001659' => 'pco', 'PRCOL_00001927' => 'pco', 'PRCOL_00003649' => 'pco', 'Prupe.1G011600' => 'ppe', 'Prupe.3G000800' => 'ppe', 'Prupe.3G001100' => 'ppe', 'Prupe.6G072700' => 'ppe', 'Prupe.6G072800' => 'ppe', 'Prupe.6G257300' => 'ppe', 'Prupe.8G033000' => 'ppe', 'Psat0s2633g0080' => 'psa', 'Psat0s3396g0080' => 'psa', 'Psat0s3396g0200' => 'psa', 'Psat3g139080' => 'psa', 'Psat5g285080' => 'psa', 'Psat6g157760' => 'psa', 'Psat6g208440' => 'psa', 'Psat7g215320' => 'psa', 'Psat7g215400' => 'psa', 'Psat7g235600' => 'psa', 'Psat7g235760' => 'psa', 'PSO063G4603' => 'pso', 'PSO210G0182' => 'pso', 'PSO210G0196' => 'pso', 'PSO339G0394' => 'pso', 'PSO339G4127' => 'pso', 'PSO513G0064' => 'pso', 'PSO761G0079' => 'pso', 'QL01p031003' => 'qlo', 'QL01p031078' => 'qlo', 'QL06p003004' => 'qlo', 'QL07p048731' => 'qlo', 'QL09p037427' => 'qlo', 'RcHm_v2.0_Chr3g0466361' => 'rch', 'RcHm_v2.0_Chr3g0485571' => 'rch', 'RcHm_v2.0_Chr4g0416551' => 'rch', 'RcHm_v2.0_Chr5g0065831' => 'rch', 'Rhsim01G0230500' => 'rsi', 'Rhsim05G0194000' => 'rsi', 'Rhsim08G0250400' => 'rsi', 'Sabra02G0131000' => 'sbr', 'Sabra06G0066300' => 'sbr', 'Sabra08G0115500' => 'sbr', 'Sabra09G0023900' => 'sbr', 'Sabra10G0054000' => 'sbr', 'Sabra14G0081500' => 'sbr', 'Sabra16G0147100' => 'sbr', 'SalBow2G2957' => 'sbo', 'SalBow4G3320' => 'sbo', 'SalBow8G1894' => 'sbo', 'Sc07g0007950' => 'sci', 'Sc12g0001360' => 'sci', 'Sc13g0004330' => 'sci', 'Sc20g0005010' => 'sci', 'Sed0000361' => 'sed', 'Sed0001706' => 'sed', 'Sed0002422' => 'sed', 'Sed0004029' => 'sed', 'Sed0004602' => 'sed', 'Sed0004943' => 'sed', 'Sed0008646' => 'sed', 'Sed0023313' => 'sed', 'Sed0024843' => 'sed', 'SEGI_00081' => 'sgi', 'SEGI_00947' => 'sgi', 'SEGI_04046' => 'sgi', 'SEGI_06880' => 'sgi', 'SEGI_09736' => 'sgi', 'SEGI_12741' => 'sgi', 'SEGI_14530' => 'sgi', 'SEGI_20705' => 'sgi', 'SEGI_26088' => 'sgi', 'SEGI_28323' => 'sgi', 'SEGI_33343' => 'sgi', 'SGA_v2.0_scaffold126G33775' => 'sas', 'SGA_v2.0_scaffold2G01337' => 'sas', 'SGA_v2.0_scaffold38G15006' => 'sas', 'SGA_v2.0_scaffold39G15264' => 'sas', 'SGA_v2.0_scaffold453G51880' => 'sas', 'SHI12696' => 'shi', 'SMO367G1096' => 'smo', 'Solyc01g068630.3' => 'sly', 'Solyc05g011880.3' => 'sly', 'Solyc06g076300.3' => 'sly', 'Solyc09g010940.4' => 'sly', 'Solyc09g075890.3' => 'sly', 'Sopen01g030560' => 'spe', 'Sopen05g006630' => 'spe', 'Sopen06g032720' => 'spe', 'Sopen09g005660' => 'spe', 'Sopen09g030690' => 'spe', 'Sp4g14540' => 'spa', 'Sp4g20030' => 'spa', 'Sp5g01320' => 'spa', 'Sp6g21170' => 'spa', 'Sp6g21180' => 'spa', 'Sp6g21190' => 'spa', 'Sp6g40220' => 'spa', 'TAR362G0122' => 'tar', 'TAR362G1338' => 'tar', 'TAR369G0590' => 'tar', 'TAR371G0824' => 'tar', 'TAR622G1429' => 'tar', 'TAR623G0734' => 'tar', 'TAR625G0441' => 'tar', 'TAR629G0976' => 'tar', 'TAR633G1195' => 'tar', 'TAR636G2660' => 'tar', 'THA.LOC104799440' => 'tha', 'THA.LOC104800966' => 'tha', 'THA.LOC104806559' => 'tha', 'THA.LOC104810765' => 'tha', 'THA.LOC104816266' => 'tha', 'THA.LOC104817419' => 'tha', 'THA.LOC104827021' => 'tha', 'Thecc.01G327400' => 'tca', 'Thecc.04G229200' => 'tca', 'Thecc.05G037400' => 'tca', 'Thecc.09G318600' => 'tca', 'Thecc.09G318700' => 'tca', 'Thhalv10006238m.g' => 'esa', 'Thhalv10014321m.g' => 'esa', 'Thhalv10014335m.g' => 'esa', 'Thhalv10015826m.g' => 'esa', 'Thhalv10017107m.g' => 'esa', 'Thhalv10017180m.g' => 'esa', 'Thhalv10029339m.g' => 'esa', 'TPR.G1699' => 'tpr', 'TPR.G23609' => 'tpr', 'TPR.G3081' => 'tpr', 'TPR.G40397' => 'tpr', 'TPR.G5522' => 'tpr', 'TPR.G5618' => 'tpr', 'TPR.G5626' => 'tpr', 'TWI09G1632' => 'twi', 'TWI23G1230' => 'twi', 'TWI53G1064' => 'twi', 'TWI59G0751' => 'twi', 'TWI74G0947' => 'twi', 'TWI77G0337' => 'twi', 'TWI79G1254' => 'twi', 'unitig_0.g2341' => 'ugi', 'unitig_26.g10006' => 'ugi', 'unitig_26.g10008' => 'ugi', 'unitig_26.g9192' => 'ugi', 'vmacro14547' => 'vma', 'vmacro15333' => 'vma', 'vmacro18743' => 'vma', 'vmacro20166' => 'vma', 'VMungo0331G0523' => 'vmu', 'VMungo0331G1202' => 'vmu', 'VMungo0720G1228' => 'vmu', 'VMungo0720G1514' => 'vmu', 'VMungo1080G0169' => 'vmu', 'VMungo1127G1475' => 'vmu', 'VMungo1383G1208' => 'vmu', 'VMungo1383G1698' => 'vmu', 'Zm00001eb012270' => 'zma', 'Zm00001eb054100' => 'zma', 'Zm00001eb063350' => 'zma', 'Zm00001eb328560' => 'zma', 'Zm00001eb342820' => 'zma', 'Zm00001eb362210' => 'zma', 'Zm00001eb397730' => 'zma', 'Zm00001eb399750' => 'zma' ), 'gf_id' => 'HOM05D000959', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000959' ), 'data_identifier' => 'HOM05D000959', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000959', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '622', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p07100' => 'bna', 'A03p11720' => 'bna', 'A05p08300' => 'bna', 'A05p13380' => 'bna', 'A09p54130' => 'bna', 'A10p16690' => 'bna', 'A10p16700' => 'bna', 'A10p33390' => 'bna', 'Aa31LG10G16020' => 'aar', 'Aa31LG1G11810' => 'aar', 'Aa31LG1G11830' => 'aar', 'Aa31LG1G22510' => 'aar', 'Aa31LG5G4890' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5793' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2310' => 'aag', 'Actinidia08499' => 'ach', 'Actinidia11262' => 'ach', 'Actinidia23926' => 'ach', 'Actinidia34420' => 'ach', 'Actinidia36970' => 'ach', 'Ah.02g111220' => 'amhyb', 'Ah.15g097750' => 'amhyb', 'AL4G27500' => 'aly', 'AL6G11470' => 'aly', 'AL8G35950' => 'aly', 'AL8G35960' => 'aly', 'AL8G35970' => 'aly', 'Aqoxy1G00912' => 'aox', 'Aqoxy2G02253' => 'aox', 'Aqoxy2G02411' => 'aox', 'Aqoxy5G00485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BZ66YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K8ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM4FUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6BF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HFV7XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25JBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0YNNV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MAKK6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P70IT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP2Z6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V61LZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YWP64R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3S9AI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7PGHH' => 'arhy', 'AT2G32150' => 'ath', 'AT3G62040' => 'ath', 'AT5G02230' => 'ath', 'AT5G59480' => 'ath', 'AT5G59490' => 'ath', 'ATR0332G060' => 'atr', 'ATR0559G190' => 'atr', 'ATR0693G294' => 'atr', 'Atru.chr3.3975' => 'acertr', 'Atru.chr3.3976' => 'acertr', 'Atru.chr3.3977' => 'acertr', 'Atru.chr4.2498' => 'acertr', 'Atru.chr5.838' => 'acertr', 'Atru.chr8.1990' => 'acertr', 'Atru.chr8.1991' => 'acertr', 'Atru.chr8.1992' => 'acertr', 'AUR62001759' => 'cqu', 'AUR62009545' => 'cqu', 'AUR62010474' => 'cqu', 'AUR62025820' => 'cqu', 'AUR62030422' => 'cqu', 'AUR62033605' => 'cqu', 'AUR62038615' => 'cqu', 'AUR62041347' => 'cqu', 'BcaB01g04574' => 'bca', 'BcaB02g09263' => 'bca', 'BcaB02g10453' => 'bca', 'BcaB05g22513' => 'bca', 'BcaB08g36253' => 'bca', 'BcaB08g36254' => 'bca', 'BcaC01g06519' => 'bca', 'BcaC02g11889' => 'bca', 'BcaC03g14010' => 'bca', 'BcaC03g18439' => 'bca', 'BcaC04g19765' => 'bca', 'BcaC09g48432' => 'bca', 'BcaNung07302' => 'bca', 'BolC2t06040H' => 'bol', 'BolC2t07346H' => 'bol', 'BolC3t13817H' => 'bol', 'BolC4t22625H' => 'bol', 'BolC4t23297H' => 'bol', 'BolC8t51278H' => 'bol', 'BolC9t58050H' => 'bol', 'BolC9t58051H' => 'bol', 'BolC9t60163H' => 'bol', 'BraA02t04712Z' => 'bra', 'BraA02t05791Z' => 'bra', 'BraA03t10483Z' => 'bra', 'BraA05t19795Z' => 'bra', 'BraA05t20276Z' => 'bra', 'BraA09t40827Z' => 'bra', 'BraA10t43750Z' => 'bra', 'BraA10t43751Z' => 'bra', 'BraA10t45370Z' => 'bra', 'C02p00400' => 'bna', 'C02p12460' => 'bna', 'C03p13680' => 'bna', 'C04p10270' => 'bna', 'C04p17500' => 'bna', 'C08p37010' => 'bna', 'C09p51880' => 'bna', 'C09p51890' => 'bna', 'C09p74300' => 'bna', 'CAN.G179.26' => 'can', 'CAN.G3384.1' => 'can', 'CAN.G394.68' => 'can', 'CAN.G907.13' => 'can', 'CANSAT11G0012' => 'cansat', 'CANSAT25G1586' => 'cansat', 'CANSAT35G0735' => 'cansat', 'CANSAT54G0556' => 'cansat', 'CANSAT64G0356' => 'cansat', 'CANSAT78G2042' => 'cansat', 'CARHR125920' => 'chi', 'CARHR131910' => 'chi', 'CARHR172390' => 'chi', 'CARHR211140' => 'chi', 'CARHR285850' => 'chi', 'CARHR285860' => 'chi', 'Carub.0004s1347' => 'cru', 'Carub.0004s1960' => 'cru', 'Carub.0005s2880' => 'cru', 'Carub.0006s0107' => 'cru', 'Carub.0008s2015' => 'cru', 'Carub.0008s2016' => 'cru', 'Carub.0008s2017' => 'cru', 'Ca_01315_v3' => 'car', 'Ca_05063_v3' => 'car', 'Ca_10231_v3' => 'car', 'Ca_10913_v3' => 'car', 'Ca_19156_v3' => 'car', 'Ca_23644_v3' => 'car', 'Ca_26735_v3' => 'car', 'Cc01_g13130' => 'ccan', 'Cc02_g21690' => 'ccan', 'Cc03_g03600' => 'ccan', 'Cc06_g02510' => 'ccan', 'CDE02G1265' => 'cde', 'CDE05G0415' => 'cde', 'CDE08G1082' => 'cde', 'Cfa005780' => 'cfa', 'Cfa011522' => 'cfa', 'Cfa011523' => 'cfa', 'Cfa015627' => 'cfa', 'Cfa017359' => 'cfa', 'Ciclev10005687m.g' => 'ccl', 'Ciclev10012173m.g' => 'ccl', 'Ciclev10021621m.g' => 'ccl', 'Ciclev10028968m.g' => 'ccl', 'Ciclev10029907m.g' => 'ccl', 'CiPaw.01G164800' => 'cil', 'CiPaw.07G083700' => 'cil', 'CiPaw.07G127000' => 'cil', 'CiPaw.07G136900' => 'cil', 'CiPaw.08G081700' => 'cil', 'CiPaw.09G194600' => 'cil', 'CiPaw.10G146500' => 'cil', 'CiPaw.13G091500' => 'cil', 'CiPaw.13G091600' => 'cil', 'ClCG00G003390' => 'cla', 'ClCG01G007220' => 'cla', 'ClCG03G001370' => 'cla', 'ClCG04G008100' => 'cla', 'ClCG06G006110' => 'cla', 'ClCG06G006130' => 'cla', 'ClCG10G021210' => 'cla', 'COL.COLO4_07648' => 'col', 'COL.COLO4_07650' => 'col', 'COL.COLO4_07651' => 'col', 'COL.COLO4_14780' => 'col', 'COL.COLO4_18546' => 'col', 'COL.COLO4_18547' => 'col', 'COL.COLO4_23103' => 'col', 'COL.COLO4_30419' => 'col', 'COL.COLO4_34232' => 'col', 'Cpa.g.sc169.20' => 'cpa', 'Cpa.g.sc57.45' => 'cpa', 'Cpa.g.sc58.124' => 'cpa', 'Cpa.g.sc58.125' => 'cpa', 'Cpa.g.sc81.118' => 'cpa', 'Cpa.g.sc81.119' => 'cpa', 'Cre12.g524700' => 'cre', 'CsaV3_1G034430' => 'csa', 'CsaV3_1G034440' => 'csa', 'CsaV3_1G034450' => 'csa', 'CsaV3_3G034830' => 'csa', 'CsaV3_4G025090' => 'csa', 'CsaV3_5G018660' => 'csa', 'CsaV3_6G038160' => 'csa', 'CSS0003447' => 'camsi', 'CSS0017840' => 'camsi', 'CSS0019260' => 'camsi', 'CSS0040375' => 'camsi', 'CSS0042533' => 'camsi', 'DCAR_005960' => 'dca', 'DCAR_012104' => 'dca', 'DCAR_012105' => 'dca', 'DCAR_012293' => 'dca', 'DCAR_015632' => 'dca', 'DCAR_024602' => 'dca', 'DCAR_028752' => 'dca', 'Dinv06261' => 'din', 'Dinv13982' => 'din', 'Dinv17029' => 'din', 'Dinv18463' => 'din', 'Dinv33181' => 'din', 'Dinv35585' => 'din', 'Dinv37161' => 'din', 'Dinv42977' => 'din', 'Dinv43122' => 'din', 'Dinv44517' => 'din', 'Duzib093G0256' => 'dzi', 'Duzib106G1254' => 'dzi', 'Duzib128G1789' => 'dzi', 'Duzib133G0633' => 'dzi', 'Duzib138G0510' => 'dzi', 'Duzib150G1084' => 'dzi', 'Duzib168G0488' => 'dzi', 'Duzib168G1523' => 'dzi', 'Duzib170G0133' => 'dzi', 'ECA234G1433' => 'eca', 'ECA236G1432' => 'eca', 'ECA236G2256' => 'eca', 'ECA236G2365' => 'eca', 'ECA236G4830' => 'eca', 'ECA248G1505' => 'eca', 'EL10Ac3g06431' => 'bvu', 'EL10Ac5g12577' => 'bvu', 'EL10Ac6g13533' => 'bvu', 'EL10Ac7g16045' => 'bvu', 'Eucgr.A01281' => 'egr', 'Eucgr.B02326' => 'egr', 'Eucgr.H03532' => 'egr', 'Eucgr.K00553' => 'egr', 'Eucgr.K03116' => 'egr', 'FAN02G3963' => 'fan', 'FAN05G0438' => 'fan', 'FAN09G2434' => 'fan', 'FAN12G3984' => 'fan', 'FAN14G0798' => 'fan', 'FAN17G0652' => 'fan', 'FAN19G1988' => 'fan', 'FAN22G0632' => 'fan', 'FAN23G0387' => 'fan', 'FAN26G1323' => 'fan', 'FAN28G0666' => 'fan', 'FvH4_1g26080' => 'fve', 'FvH4_3g36780' => 'fve', 'FvH4_4g15270' => 'fve', 'FvH4_6g13490' => 'fve', 'Glyma.01G098700' => 'gma', 'Glyma.03G065900' => 'gma', 'Glyma.03G073754' => 'gma', 'Glyma.03G073758' => 'gma', 'Glyma.03G083200' => 'gma', 'Glyma.03G225500' => 'gma', 'Glyma.05G037766' => 'gma', 'Glyma.07G133500' => 'gma', 'Glyma.10G139400' => 'gma', 'Glyma.10G248900' => 'gma', 'Glyma.11G137800' => 'gma', 'Glyma.12G061300' => 'gma', 'Glyma.13G337900' => 'gma', 'Glyma.15G036600' => 'gma', 'Glyma.18G182800' => 'gma', 'Glyma.19G222500' => 'gma', 'Glyma.20G144800' => 'gma', 'Gohir.A01G222000' => 'ghi', 'Gohir.A03G044000' => 'ghi', 'Gohir.A03G044100' => 'ghi', 'Gohir.A04G083100' => 'ghi', 'Gohir.A07G127200' => 'ghi', 'Gohir.A07G132400' => 'ghi', 'Gohir.A08G000700' => 'ghi', 'Gohir.A11G327300' => 'ghi', 'Gohir.D01G211500' => 'ghi', 'Gohir.D03G123400' => 'ghi', 'Gohir.D03G123500' => 'ghi', 'Gohir.D04G121800' => 'ghi', 'Gohir.D07G131500' => 'ghi', 'Gohir.D07G136600' => 'ghi', 'Gohir.D08G011600' => 'ghi', 'Gohir.D11G346200' => 'ghi', 'Gorai.001G142800' => 'gra', 'Gorai.001G148700' => 'gra', 'Gorai.002G257300' => 'gra', 'Gorai.003G130000' => 'gra', 'Gorai.003G130100' => 'gra', 'Gorai.004G005300' => 'gra', 'Gorai.007G376500' => 'gra', 'Gorai.012G104700' => 'gra', 'GSVIVG01017946001' => 'vvi', 'GSVIVG01024928001' => 'vvi', 'GSVIVG01028227001' => 'vvi', 'GSVIVG01034151001' => 'vvi', 'HanXRQChr05g0135031' => 'han', 'HanXRQChr05g0135041' => 'han', 'HanXRQChr05g0140021' => 'han', 'HanXRQChr06g0178981' => 'han', 'HanXRQChr07g0188251' => 'han', 'HanXRQChr08g0235311' => 'han', 'HanXRQChr09g0271011' => 'han', 'HanXRQChr10g0293321' => 'han', 'HanXRQChr13g0388171' => 'han', 'Haze_00916' => 'cav', 'Haze_05063' => 'cav', 'Haze_20814' => 'cav', 'Haze_24128' => 'cav', 'Hma1.2p1_0745F.1_g212010' => 'hma', 'Hma1.2p1_0757F.1_g213260' => 'hma', 'Hma1.2p1_0936F.1_g238840' => 'hma', 'Hma1.2p1_1735F.1_g299890' => 'hma', 'Hma1.2p1_1861F.1_g305685' => 'hma', 'HPP92_003397' => 'vpl', 'HPP92_012597' => 'vpl', 'HPP92_015520' => 'vpl', 'HPP92_015539' => 'vpl', 'HPP92_020373' => 'vpl', 'Hund04938' => 'sun', 'Hund10677' => 'sun', 'Hund11033' => 'sun', 'Hund12155' => 'sun', 'Lalb_Chr01g0022551' => 'lal', 'Lalb_Chr03g0042341' => 'lal', 'Lalb_Chr07g0192931' => 'lal', 'Lalb_Chr12g0209551' => 'lal', 'Lalb_Chr19g0125251' => 'lal', 'Lalb_Chr19g0137891' => 'lal', 'Lalb_Chr21g0304641' => 'lal', 'Lalb_Chr21g0309881' => 'lal', 'Lj1A5T12' => 'lonja', 'Lj1C148G10' => 'lonja', 'Lj2A93T83' => 'lonja', 'Lj3A738G68' => 'lonja', 'Lj3C966T1' => 'lonja', 'Lj3g0018958' => 'lja', 'Lj3g0021831' => 'lja', 'Lj3g0025443' => 'lja', 'Lj4g0026809' => 'lja', 'Lj5g0012558' => 'lja', 'Lj5g0021586' => 'lja', 'Lsat_1_v5_gn_5_156840' => 'lsa', 'Lsat_1_v5_gn_8_73460' => 'lsa', 'Lsat_1_v5_gn_8_73481' => 'lsa', 'Lsat_1_v5_gn_9_31601' => 'lsa', 'Lsat_1_v5_gn_9_77320' => 'lsa', 'Manes.01G171300' => 'mes', 'Manes.01G171400' => 'mes', 'Manes.01G236100' => 'mes', 'Manes.02G130500' => 'mes', 'Manes.02G130600' => 'mes', 'Manes.03G180200' => 'mes', 'Manes.05G007000' => 'mes', 'Manes.08G084400' => 'mes', 'Manes.09G092600' => 'mes', 'Manes.15G027900' => 'mes', 'MBI04_g40948_MAGBIO' => 'mbi', 'MBI14_g12123_MAGBIO' => 'mbi', 'MBI18_g28915_MAGBIO' => 'mbi', 'MCO09G053' => 'mco', 'MCO11G782' => 'mco', 'MCO15G215' => 'mco', 'MD03G1088500' => 'mdo', 'MD03G1088600' => 'mdo', 'MD04G1130800' => 'mdo', 'MD09G1291700' => 'mdo', 'MD11G1097500' => 'mdo', 'MD11G1097600' => 'mdo', 'MD12G1143900' => 'mdo', 'MD13G1191400' => 'mdo', 'MD16G1191500' => 'mdo', 'Medtr1g085570' => 'mtr', 'Medtr1g104610' => 'mtr', 'Medtr2g097520' => 'mtr', 'Medtr4g021800' => 'mtr', 'Medtr4g021825' => 'mtr', 'Medtr4g064270' => 'mtr', 'Medtr4g064380' => 'mtr', 'Medtr7g062150' => 'mtr', 'MELO3C003138.2' => 'cme', 'MELO3C005187.2' => 'cme', 'MELO3C009252.2' => 'cme', 'MELO3C014481.2' => 'cme', 'MELO3C020616.2' => 'cme', 'MELO3C020617.2' => 'cme', 'MELO3C020618.2' => 'cme', 'Migut.G00328' => 'egut', 'Migut.J00320' => 'egut', 'Migut.L01000' => 'egut', 'Migut.L01953' => 'egut', 'MSTRG.10253' => 'ama', 'MSTRG.19077' => 'ama', 'MSTRG.26780' => 'ama', 'MSTRG.4023' => 'ama', 'MSTRG.5655' => 'ama', 'MSTRG.9992' => 'ama', 'Nitab4.5_0000043g0310' => 'nta', 'Nitab4.5_0000463g0080' => 'nta', 'Nitab4.5_0000705g0170' => 'nta', 'Nitab4.5_0001326g0060' => 'nta', 'Nitab4.5_0001628g0030' => 'nta', 'Nitab4.5_0002103g0110' => 'nta', 'Nitab4.5_0002946g0030' => 'nta', 'Nitab4.5_0004639g0030' => 'nta', 'Nn2g11149' => 'nnu', 'Nn2g13389' => 'nnu', 'Nn4g25326' => 'nnu', 'Nn4g26290' => 'nnu', 'Nn5g29865' => 'nnu', 'Oeu004163.1' => 'oeu', 'Oeu006901.1' => 'oeu', 'Oeu010096.1' => 'oeu', 'Oeu024340.1' => 'oeu', 'Oeu048369.1' => 'oeu', 'Os01g0973000' => 'osa', 'Os03g0273800' => 'osa', 'Os03g0701200' => 'osa', 'Os03g0834050' => 'osa', 'Os07g0634400' => 'osa', 'Peaxi162Scf00092g01414' => 'pax', 'Peaxi162Scf00165g00818' => 'pax', 'Peaxi162Scf00309g00516' => 'pax', 'Peaxi162Scf00774g00218' => 'pax', 'PGR004G1824' => 'pgr', 'PGR004G2606' => 'pgr', 'PGR031G2716' => 'pgr', 'PGR102G2460' => 'pgr', 'PGR142G2599' => 'pgr', 'PGSC0003DMG400000843' => 'stu', 'PGSC0003DMG400008829' => 'stu', 'PGSC0003DMG400030418' => 'stu', 'PGSC0003DMG400031834' => 'stu', 'PGSC0003DMG401028300' => 'stu', 'PGSC0003DMG402028300' => 'stu', 'Phvul.001G219300' => 'pvu', 'Phvul.007G056000' => 'pvu', 'Phvul.007G208000' => 'pvu', 'Phvul.008G119500' => 'pvu', 'Phvul.010G011200' => 'pvu', 'Phvul.010G014800' => 'pvu', 'Phvul.011G062900' => 'pvu', 'Phvul.L007043' => 'pvu', 'Potri.001G242300' => 'ptr', 'Potri.002G185300' => 'ptr', 'Potri.006G086900' => 'ptr', 'Potri.008G151700' => 'ptr', 'Potri.009G033500' => 'ptr', 'Potri.010G089300' => 'ptr', 'Potri.014G110800' => 'ptr', 'Pp3c27_8130' => 'ppa', 'Pp3c6_27410' => 'ppa', 'PRCOL_00001659' => 'pco', 'PRCOL_00001927' => 'pco', 'PRCOL_00003649' => 'pco', 'Prupe.1G011600' => 'ppe', 'Prupe.3G000800' => 'ppe', 'Prupe.3G001100' => 'ppe', 'Prupe.6G072700' => 'ppe', 'Prupe.6G072800' => 'ppe', 'Prupe.6G257300' => 'ppe', 'Prupe.8G033000' => 'ppe', 'Psat0s2633g0080' => 'psa', 'Psat0s3396g0080' => 'psa', 'Psat0s3396g0200' => 'psa', 'Psat3g139080' => 'psa', 'Psat5g285080' => 'psa', 'Psat6g157760' => 'psa', 'Psat6g208440' => 'psa', 'Psat7g215320' => 'psa', 'Psat7g215400' => 'psa', 'Psat7g235600' => 'psa', 'Psat7g235760' => 'psa', 'PSO063G4603' => 'pso', 'PSO210G0182' => 'pso', 'PSO210G0196' => 'pso', 'PSO339G0394' => 'pso', 'PSO339G4127' => 'pso', 'PSO513G0064' => 'pso', 'PSO761G0079' => 'pso', 'QL01p031003' => 'qlo', 'QL01p031078' => 'qlo', 'QL06p003004' => 'qlo', 'QL07p048731' => 'qlo', 'QL09p037427' => 'qlo', 'RcHm_v2.0_Chr3g0466361' => 'rch', 'RcHm_v2.0_Chr3g0485571' => 'rch', 'RcHm_v2.0_Chr4g0416551' => 'rch', 'RcHm_v2.0_Chr5g0065831' => 'rch', 'Rhsim01G0230500' => 'rsi', 'Rhsim05G0194000' => 'rsi', 'Rhsim08G0250400' => 'rsi', 'Sabra02G0131000' => 'sbr', 'Sabra06G0066300' => 'sbr', 'Sabra08G0115500' => 'sbr', 'Sabra09G0023900' => 'sbr', 'Sabra10G0054000' => 'sbr', 'Sabra14G0081500' => 'sbr', 'Sabra16G0147100' => 'sbr', 'SalBow2G2957' => 'sbo', 'SalBow4G3320' => 'sbo', 'SalBow8G1894' => 'sbo', 'Sc07g0007950' => 'sci', 'Sc12g0001360' => 'sci', 'Sc13g0004330' => 'sci', 'Sc20g0005010' => 'sci', 'Sed0000361' => 'sed', 'Sed0001706' => 'sed', 'Sed0002422' => 'sed', 'Sed0004029' => 'sed', 'Sed0004602' => 'sed', 'Sed0004943' => 'sed', 'Sed0008646' => 'sed', 'Sed0023313' => 'sed', 'Sed0024843' => 'sed', 'SEGI_00081' => 'sgi', 'SEGI_00947' => 'sgi', 'SEGI_04046' => 'sgi', 'SEGI_06880' => 'sgi', 'SEGI_09736' => 'sgi', 'SEGI_12741' => 'sgi', 'SEGI_14530' => 'sgi', 'SEGI_20705' => 'sgi', 'SEGI_26088' => 'sgi', 'SEGI_28323' => 'sgi', 'SEGI_33343' => 'sgi', 'SGA_v2.0_scaffold126G33775' => 'sas', 'SGA_v2.0_scaffold2G01337' => 'sas', 'SGA_v2.0_scaffold38G15006' => 'sas', 'SGA_v2.0_scaffold39G15264' => 'sas', 'SGA_v2.0_scaffold453G51880' => 'sas', 'SHI12696' => 'shi', 'SMO367G1096' => 'smo', 'Solyc01g068630.3' => 'sly', 'Solyc05g011880.3' => 'sly', 'Solyc06g076300.3' => 'sly', 'Solyc09g010940.4' => 'sly', 'Solyc09g075890.3' => 'sly', 'Sopen01g030560' => 'spe', 'Sopen05g006630' => 'spe', 'Sopen06g032720' => 'spe', 'Sopen09g005660' => 'spe', 'Sopen09g030690' => 'spe', 'Sp4g14540' => 'spa', 'Sp4g20030' => 'spa', 'Sp5g01320' => 'spa', 'Sp6g21170' => 'spa', 'Sp6g21180' => 'spa', 'Sp6g21190' => 'spa', 'Sp6g40220' => 'spa', 'TAR362G0122' => 'tar', 'TAR362G1338' => 'tar', 'TAR369G0590' => 'tar', 'TAR371G0824' => 'tar', 'TAR622G1429' => 'tar', 'TAR623G0734' => 'tar', 'TAR625G0441' => 'tar', 'TAR629G0976' => 'tar', 'TAR633G1195' => 'tar', 'TAR636G2660' => 'tar', 'THA.LOC104799440' => 'tha', 'THA.LOC104800966' => 'tha', 'THA.LOC104806559' => 'tha', 'THA.LOC104810765' => 'tha', 'THA.LOC104816266' => 'tha', 'THA.LOC104817419' => 'tha', 'THA.LOC104827021' => 'tha', 'Thecc.01G327400' => 'tca', 'Thecc.04G229200' => 'tca', 'Thecc.05G037400' => 'tca', 'Thecc.09G318600' => 'tca', 'Thecc.09G318700' => 'tca', 'Thhalv10006238m.g' => 'esa', 'Thhalv10014321m.g' => 'esa', 'Thhalv10014335m.g' => 'esa', 'Thhalv10015826m.g' => 'esa', 'Thhalv10017107m.g' => 'esa', 'Thhalv10017180m.g' => 'esa', 'Thhalv10029339m.g' => 'esa', 'TPR.G1699' => 'tpr', 'TPR.G23609' => 'tpr', 'TPR.G3081' => 'tpr', 'TPR.G40397' => 'tpr', 'TPR.G5522' => 'tpr', 'TPR.G5618' => 'tpr', 'TPR.G5626' => 'tpr', 'TWI09G1632' => 'twi', 'TWI23G1230' => 'twi', 'TWI53G1064' => 'twi', 'TWI59G0751' => 'twi', 'TWI74G0947' => 'twi', 'TWI77G0337' => 'twi', 'TWI79G1254' => 'twi', 'unitig_0.g2341' => 'ugi', 'unitig_26.g10006' => 'ugi', 'unitig_26.g10008' => 'ugi', 'unitig_26.g9192' => 'ugi', 'vmacro14547' => 'vma', 'vmacro15333' => 'vma', 'vmacro18743' => 'vma', 'vmacro20166' => 'vma', 'VMungo0331G0523' => 'vmu', 'VMungo0331G1202' => 'vmu', 'VMungo0720G1228' => 'vmu', 'VMungo0720G1514' => 'vmu', 'VMungo1080G0169' => 'vmu', 'VMungo1127G1475' => 'vmu', 'VMungo1383G1208' => 'vmu', 'VMungo1383G1698' => 'vmu', 'Zm00001eb012270' => 'zma', 'Zm00001eb054100' => 'zma', 'Zm00001eb063350' => 'zma', 'Zm00001eb328560' => 'zma', 'Zm00001eb342820' => 'zma', 'Zm00001eb362210' => 'zma', 'Zm00001eb397730' => 'zma', 'Zm00001eb399750' => 'zma' ) $gf_id = 'HOM05D000959' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000959' ) $data_identifier = 'HOM05D000959' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 5, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 5, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 10, 'mbi' => (int) 3, 'mco' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 2, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 3, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 11, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399750' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000959', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '622', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p07100' => 'bna', 'A03p11720' => 'bna', 'A05p08300' => 'bna', 'A05p13380' => 'bna', 'A09p54130' => 'bna', 'A10p16690' => 'bna', 'A10p16700' => 'bna', 'A10p33390' => 'bna', 'Aa31LG10G16020' => 'aar', 'Aa31LG1G11810' => 'aar', 'Aa31LG1G11830' => 'aar', 'Aa31LG1G22510' => 'aar', 'Aa31LG5G4890' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5793' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2310' => 'aag', 'Actinidia08499' => 'ach', 'Actinidia11262' => 'ach', 'Actinidia23926' => 'ach', 'Actinidia34420' => 'ach', 'Actinidia36970' => 'ach', 'Ah.02g111220' => 'amhyb', 'Ah.15g097750' => 'amhyb', 'AL4G27500' => 'aly', 'AL6G11470' => 'aly', 'AL8G35950' => 'aly', 'AL8G35960' => 'aly', 'AL8G35970' => 'aly', 'Aqoxy1G00912' => 'aox', 'Aqoxy2G02253' => 'aox', 'Aqoxy2G02411' => 'aox', 'Aqoxy5G00485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BZ66YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K8ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM4FUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6BF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HFV7XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25JBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0YNNV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MAKK6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P70IT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP2Z6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V61LZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YWP64R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3S9AI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7PGHH' => 'arhy', 'AT2G32150' => 'ath', 'AT3G62040' => 'ath', 'AT5G02230' => 'ath', 'AT5G59480' => 'ath', 'AT5G59490' => 'ath', 'ATR0332G060' => 'atr', 'ATR0559G190' => 'atr', 'ATR0693G294' => 'atr', 'Atru.chr3.3975' => 'acertr', 'Atru.chr3.3976' => 'acertr', 'Atru.chr3.3977' => 'acertr', 'Atru.chr4.2498' => 'acertr', 'Atru.chr5.838' => 'acertr', 'Atru.chr8.1990' => 'acertr', 'Atru.chr8.1991' => 'acertr', 'Atru.chr8.1992' => 'acertr', 'AUR62001759' => 'cqu', 'AUR62009545' => 'cqu', 'AUR62010474' => 'cqu', 'AUR62025820' => 'cqu', 'AUR62030422' => 'cqu', 'AUR62033605' => 'cqu', 'AUR62038615' => 'cqu', 'AUR62041347' => 'cqu', 'BcaB01g04574' => 'bca', 'BcaB02g09263' => 'bca', 'BcaB02g10453' => 'bca', 'BcaB05g22513' => 'bca', 'BcaB08g36253' => 'bca', 'BcaB08g36254' => 'bca', 'BcaC01g06519' => 'bca', 'BcaC02g11889' => 'bca', 'BcaC03g14010' => 'bca', 'BcaC03g18439' => 'bca', 'BcaC04g19765' => 'bca', 'BcaC09g48432' => 'bca', 'BcaNung07302' => 'bca', 'BolC2t06040H' => 'bol', 'BolC2t07346H' => 'bol', 'BolC3t13817H' => 'bol', 'BolC4t22625H' => 'bol', 'BolC4t23297H' => 'bol', 'BolC8t51278H' => 'bol', 'BolC9t58050H' => 'bol', 'BolC9t58051H' => 'bol', 'BolC9t60163H' => 'bol', 'BraA02t04712Z' => 'bra', 'BraA02t05791Z' => 'bra', 'BraA03t10483Z' => 'bra', 'BraA05t19795Z' => 'bra', 'BraA05t20276Z' => 'bra', 'BraA09t40827Z' => 'bra', 'BraA10t43750Z' => 'bra', 'BraA10t43751Z' => 'bra', 'BraA10t45370Z' => 'bra', 'C02p00400' => 'bna', 'C02p12460' => 'bna', 'C03p13680' => 'bna', 'C04p10270' => 'bna', 'C04p17500' => 'bna', 'C08p37010' => 'bna', 'C09p51880' => 'bna', 'C09p51890' => 'bna', 'C09p74300' => 'bna', 'CAN.G179.26' => 'can', 'CAN.G3384.1' => 'can', 'CAN.G394.68' => 'can', 'CAN.G907.13' => 'can', 'CANSAT11G0012' => 'cansat', 'CANSAT25G1586' => 'cansat', 'CANSAT35G0735' => 'cansat', 'CANSAT54G0556' => 'cansat', 'CANSAT64G0356' => 'cansat', 'CANSAT78G2042' => 'cansat', 'CARHR125920' => 'chi', 'CARHR131910' => 'chi', 'CARHR172390' => 'chi', 'CARHR211140' => 'chi', 'CARHR285850' => 'chi', 'CARHR285860' => 'chi', 'Carub.0004s1347' => 'cru', 'Carub.0004s1960' => 'cru', 'Carub.0005s2880' => 'cru', 'Carub.0006s0107' => 'cru', 'Carub.0008s2015' => 'cru', 'Carub.0008s2016' => 'cru', 'Carub.0008s2017' => 'cru', 'Ca_01315_v3' => 'car', 'Ca_05063_v3' => 'car', 'Ca_10231_v3' => 'car', 'Ca_10913_v3' => 'car', 'Ca_19156_v3' => 'car', 'Ca_23644_v3' => 'car', 'Ca_26735_v3' => 'car', 'Cc01_g13130' => 'ccan', 'Cc02_g21690' => 'ccan', 'Cc03_g03600' => 'ccan', 'Cc06_g02510' => 'ccan', 'CDE02G1265' => 'cde', 'CDE05G0415' => 'cde', 'CDE08G1082' => 'cde', 'Cfa005780' => 'cfa', 'Cfa011522' => 'cfa', 'Cfa011523' => 'cfa', 'Cfa015627' => 'cfa', 'Cfa017359' => 'cfa', 'Ciclev10005687m.g' => 'ccl', 'Ciclev10012173m.g' => 'ccl', 'Ciclev10021621m.g' => 'ccl', 'Ciclev10028968m.g' => 'ccl', 'Ciclev10029907m.g' => 'ccl', 'CiPaw.01G164800' => 'cil', 'CiPaw.07G083700' => 'cil', 'CiPaw.07G127000' => 'cil', 'CiPaw.07G136900' => 'cil', 'CiPaw.08G081700' => 'cil', 'CiPaw.09G194600' => 'cil', 'CiPaw.10G146500' => 'cil', 'CiPaw.13G091500' => 'cil', 'CiPaw.13G091600' => 'cil', 'ClCG00G003390' => 'cla', 'ClCG01G007220' => 'cla', 'ClCG03G001370' => 'cla', 'ClCG04G008100' => 'cla', 'ClCG06G006110' => 'cla', 'ClCG06G006130' => 'cla', 'ClCG10G021210' => 'cla', 'COL.COLO4_07648' => 'col', 'COL.COLO4_07650' => 'col', 'COL.COLO4_07651' => 'col', 'COL.COLO4_14780' => 'col', 'COL.COLO4_18546' => 'col', 'COL.COLO4_18547' => 'col', 'COL.COLO4_23103' => 'col', 'COL.COLO4_30419' => 'col', 'COL.COLO4_34232' => 'col', 'Cpa.g.sc169.20' => 'cpa', 'Cpa.g.sc57.45' => 'cpa', 'Cpa.g.sc58.124' => 'cpa', 'Cpa.g.sc58.125' => 'cpa', 'Cpa.g.sc81.118' => 'cpa', 'Cpa.g.sc81.119' => 'cpa', 'Cre12.g524700' => 'cre', 'CsaV3_1G034430' => 'csa', 'CsaV3_1G034440' => 'csa', 'CsaV3_1G034450' => 'csa', 'CsaV3_3G034830' => 'csa', 'CsaV3_4G025090' => 'csa', 'CsaV3_5G018660' => 'csa', 'CsaV3_6G038160' => 'csa', 'CSS0003447' => 'camsi', 'CSS0017840' => 'camsi', 'CSS0019260' => 'camsi', 'CSS0040375' => 'camsi', 'CSS0042533' => 'camsi', 'DCAR_005960' => 'dca', 'DCAR_012104' => 'dca', 'DCAR_012105' => 'dca', 'DCAR_012293' => 'dca', 'DCAR_015632' => 'dca', 'DCAR_024602' => 'dca', 'DCAR_028752' => 'dca', 'Dinv06261' => 'din', 'Dinv13982' => 'din', 'Dinv17029' => 'din', 'Dinv18463' => 'din', 'Dinv33181' => 'din', 'Dinv35585' => 'din', 'Dinv37161' => 'din', 'Dinv42977' => 'din', 'Dinv43122' => 'din', 'Dinv44517' => 'din', 'Duzib093G0256' => 'dzi', 'Duzib106G1254' => 'dzi', 'Duzib128G1789' => 'dzi', 'Duzib133G0633' => 'dzi', 'Duzib138G0510' => 'dzi', 'Duzib150G1084' => 'dzi', 'Duzib168G0488' => 'dzi', 'Duzib168G1523' => 'dzi', 'Duzib170G0133' => 'dzi', 'ECA234G1433' => 'eca', 'ECA236G1432' => 'eca', 'ECA236G2256' => 'eca', 'ECA236G2365' => 'eca', 'ECA236G4830' => 'eca', 'ECA248G1505' => 'eca', 'EL10Ac3g06431' => 'bvu', 'EL10Ac5g12577' => 'bvu', 'EL10Ac6g13533' => 'bvu', 'EL10Ac7g16045' => 'bvu', 'Eucgr.A01281' => 'egr', 'Eucgr.B02326' => 'egr', 'Eucgr.H03532' => 'egr', 'Eucgr.K00553' => 'egr', 'Eucgr.K03116' => 'egr', 'FAN02G3963' => 'fan', 'FAN05G0438' => 'fan', 'FAN09G2434' => 'fan', 'FAN12G3984' => 'fan', 'FAN14G0798' => 'fan', 'FAN17G0652' => 'fan', 'FAN19G1988' => 'fan', 'FAN22G0632' => 'fan', 'FAN23G0387' => 'fan', 'FAN26G1323' => 'fan', 'FAN28G0666' => 'fan', 'FvH4_1g26080' => 'fve', 'FvH4_3g36780' => 'fve', 'FvH4_4g15270' => 'fve', 'FvH4_6g13490' => 'fve', 'Glyma.01G098700' => 'gma', 'Glyma.03G065900' => 'gma', 'Glyma.03G073754' => 'gma', 'Glyma.03G073758' => 'gma', 'Glyma.03G083200' => 'gma', 'Glyma.03G225500' => 'gma', 'Glyma.05G037766' => 'gma', 'Glyma.07G133500' => 'gma', 'Glyma.10G139400' => 'gma', 'Glyma.10G248900' => 'gma', 'Glyma.11G137800' => 'gma', 'Glyma.12G061300' => 'gma', 'Glyma.13G337900' => 'gma', 'Glyma.15G036600' => 'gma', 'Glyma.18G182800' => 'gma', 'Glyma.19G222500' => 'gma', 'Glyma.20G144800' => 'gma', 'Gohir.A01G222000' => 'ghi', 'Gohir.A03G044000' => 'ghi', 'Gohir.A03G044100' => 'ghi', 'Gohir.A04G083100' => 'ghi', 'Gohir.A07G127200' => 'ghi', 'Gohir.A07G132400' => 'ghi', 'Gohir.A08G000700' => 'ghi', 'Gohir.A11G327300' => 'ghi', 'Gohir.D01G211500' => 'ghi', 'Gohir.D03G123400' => 'ghi', 'Gohir.D03G123500' => 'ghi', 'Gohir.D04G121800' => 'ghi', 'Gohir.D07G131500' => 'ghi', 'Gohir.D07G136600' => 'ghi', 'Gohir.D08G011600' => 'ghi', 'Gohir.D11G346200' => 'ghi', 'Gorai.001G142800' => 'gra', 'Gorai.001G148700' => 'gra', 'Gorai.002G257300' => 'gra', 'Gorai.003G130000' => 'gra', 'Gorai.003G130100' => 'gra', 'Gorai.004G005300' => 'gra', 'Gorai.007G376500' => 'gra', 'Gorai.012G104700' => 'gra', 'GSVIVG01017946001' => 'vvi', 'GSVIVG01024928001' => 'vvi', 'GSVIVG01028227001' => 'vvi', 'GSVIVG01034151001' => 'vvi', 'HanXRQChr05g0135031' => 'han', 'HanXRQChr05g0135041' => 'han', 'HanXRQChr05g0140021' => 'han', 'HanXRQChr06g0178981' => 'han', 'HanXRQChr07g0188251' => 'han', 'HanXRQChr08g0235311' => 'han', 'HanXRQChr09g0271011' => 'han', 'HanXRQChr10g0293321' => 'han', 'HanXRQChr13g0388171' => 'han', 'Haze_00916' => 'cav', 'Haze_05063' => 'cav', 'Haze_20814' => 'cav', 'Haze_24128' => 'cav', 'Hma1.2p1_0745F.1_g212010' => 'hma', 'Hma1.2p1_0757F.1_g213260' => 'hma', 'Hma1.2p1_0936F.1_g238840' => 'hma', 'Hma1.2p1_1735F.1_g299890' => 'hma', 'Hma1.2p1_1861F.1_g305685' => 'hma', 'HPP92_003397' => 'vpl', 'HPP92_012597' => 'vpl', 'HPP92_015520' => 'vpl', 'HPP92_015539' => 'vpl', 'HPP92_020373' => 'vpl', 'Hund04938' => 'sun', 'Hund10677' => 'sun', 'Hund11033' => 'sun', 'Hund12155' => 'sun', 'Lalb_Chr01g0022551' => 'lal', 'Lalb_Chr03g0042341' => 'lal', 'Lalb_Chr07g0192931' => 'lal', 'Lalb_Chr12g0209551' => 'lal', 'Lalb_Chr19g0125251' => 'lal', 'Lalb_Chr19g0137891' => 'lal', 'Lalb_Chr21g0304641' => 'lal', 'Lalb_Chr21g0309881' => 'lal', 'Lj1A5T12' => 'lonja', 'Lj1C148G10' => 'lonja', 'Lj2A93T83' => 'lonja', 'Lj3A738G68' => 'lonja', 'Lj3C966T1' => 'lonja', 'Lj3g0018958' => 'lja', 'Lj3g0021831' => 'lja', 'Lj3g0025443' => 'lja', 'Lj4g0026809' => 'lja', 'Lj5g0012558' => 'lja', 'Lj5g0021586' => 'lja', 'Lsat_1_v5_gn_5_156840' => 'lsa', 'Lsat_1_v5_gn_8_73460' => 'lsa', 'Lsat_1_v5_gn_8_73481' => 'lsa', 'Lsat_1_v5_gn_9_31601' => 'lsa', 'Lsat_1_v5_gn_9_77320' => 'lsa', 'Manes.01G171300' => 'mes', 'Manes.01G171400' => 'mes', 'Manes.01G236100' => 'mes', 'Manes.02G130500' => 'mes', 'Manes.02G130600' => 'mes', 'Manes.03G180200' => 'mes', 'Manes.05G007000' => 'mes', 'Manes.08G084400' => 'mes', 'Manes.09G092600' => 'mes', 'Manes.15G027900' => 'mes', 'MBI04_g40948_MAGBIO' => 'mbi', 'MBI14_g12123_MAGBIO' => 'mbi', 'MBI18_g28915_MAGBIO' => 'mbi', 'MCO09G053' => 'mco', 'MCO11G782' => 'mco', 'MCO15G215' => 'mco', 'MD03G1088500' => 'mdo', 'MD03G1088600' => 'mdo', 'MD04G1130800' => 'mdo', 'MD09G1291700' => 'mdo', 'MD11G1097500' => 'mdo', 'MD11G1097600' => 'mdo', 'MD12G1143900' => 'mdo', 'MD13G1191400' => 'mdo', 'MD16G1191500' => 'mdo', 'Medtr1g085570' => 'mtr', 'Medtr1g104610' => 'mtr', 'Medtr2g097520' => 'mtr', 'Medtr4g021800' => 'mtr', 'Medtr4g021825' => 'mtr', 'Medtr4g064270' => 'mtr', 'Medtr4g064380' => 'mtr', 'Medtr7g062150' => 'mtr', 'MELO3C003138.2' => 'cme', 'MELO3C005187.2' => 'cme', 'MELO3C009252.2' => 'cme', 'MELO3C014481.2' => 'cme', 'MELO3C020616.2' => 'cme', 'MELO3C020617.2' => 'cme', 'MELO3C020618.2' => 'cme', 'Migut.G00328' => 'egut', 'Migut.J00320' => 'egut', 'Migut.L01000' => 'egut', 'Migut.L01953' => 'egut', 'MSTRG.10253' => 'ama', 'MSTRG.19077' => 'ama', 'MSTRG.26780' => 'ama', 'MSTRG.4023' => 'ama', 'MSTRG.5655' => 'ama', 'MSTRG.9992' => 'ama', 'Nitab4.5_0000043g0310' => 'nta', 'Nitab4.5_0000463g0080' => 'nta', 'Nitab4.5_0000705g0170' => 'nta', 'Nitab4.5_0001326g0060' => 'nta', 'Nitab4.5_0001628g0030' => 'nta', 'Nitab4.5_0002103g0110' => 'nta', 'Nitab4.5_0002946g0030' => 'nta', 'Nitab4.5_0004639g0030' => 'nta', 'Nn2g11149' => 'nnu', 'Nn2g13389' => 'nnu', 'Nn4g25326' => 'nnu', 'Nn4g26290' => 'nnu', 'Nn5g29865' => 'nnu', 'Oeu004163.1' => 'oeu', 'Oeu006901.1' => 'oeu', 'Oeu010096.1' => 'oeu', 'Oeu024340.1' => 'oeu', 'Oeu048369.1' => 'oeu', 'Os01g0973000' => 'osa', 'Os03g0273800' => 'osa', 'Os03g0701200' => 'osa', 'Os03g0834050' => 'osa', 'Os07g0634400' => 'osa', 'Peaxi162Scf00092g01414' => 'pax', 'Peaxi162Scf00165g00818' => 'pax', 'Peaxi162Scf00309g00516' => 'pax', 'Peaxi162Scf00774g00218' => 'pax', 'PGR004G1824' => 'pgr', 'PGR004G2606' => 'pgr', 'PGR031G2716' => 'pgr', 'PGR102G2460' => 'pgr', 'PGR142G2599' => 'pgr', 'PGSC0003DMG400000843' => 'stu', 'PGSC0003DMG400008829' => 'stu', 'PGSC0003DMG400030418' => 'stu', 'PGSC0003DMG400031834' => 'stu', 'PGSC0003DMG401028300' => 'stu', 'PGSC0003DMG402028300' => 'stu', 'Phvul.001G219300' => 'pvu', 'Phvul.007G056000' => 'pvu', 'Phvul.007G208000' => 'pvu', 'Phvul.008G119500' => 'pvu', 'Phvul.010G011200' => 'pvu', 'Phvul.010G014800' => 'pvu', 'Phvul.011G062900' => 'pvu', 'Phvul.L007043' => 'pvu', 'Potri.001G242300' => 'ptr', 'Potri.002G185300' => 'ptr', 'Potri.006G086900' => 'ptr', 'Potri.008G151700' => 'ptr', 'Potri.009G033500' => 'ptr', 'Potri.010G089300' => 'ptr', 'Potri.014G110800' => 'ptr', 'Pp3c27_8130' => 'ppa', 'Pp3c6_27410' => 'ppa', 'PRCOL_00001659' => 'pco', 'PRCOL_00001927' => 'pco', 'PRCOL_00003649' => 'pco', 'Prupe.1G011600' => 'ppe', 'Prupe.3G000800' => 'ppe', 'Prupe.3G001100' => 'ppe', 'Prupe.6G072700' => 'ppe', 'Prupe.6G072800' => 'ppe', 'Prupe.6G257300' => 'ppe', 'Prupe.8G033000' => 'ppe', 'Psat0s2633g0080' => 'psa', 'Psat0s3396g0080' => 'psa', 'Psat0s3396g0200' => 'psa', 'Psat3g139080' => 'psa', 'Psat5g285080' => 'psa', 'Psat6g157760' => 'psa', 'Psat6g208440' => 'psa', 'Psat7g215320' => 'psa', 'Psat7g215400' => 'psa', 'Psat7g235600' => 'psa', 'Psat7g235760' => 'psa', 'PSO063G4603' => 'pso', 'PSO210G0182' => 'pso', 'PSO210G0196' => 'pso', 'PSO339G0394' => 'pso', 'PSO339G4127' => 'pso', 'PSO513G0064' => 'pso', 'PSO761G0079' => 'pso', 'QL01p031003' => 'qlo', 'QL01p031078' => 'qlo', 'QL06p003004' => 'qlo', 'QL07p048731' => 'qlo', 'QL09p037427' => 'qlo', 'RcHm_v2.0_Chr3g0466361' => 'rch', 'RcHm_v2.0_Chr3g0485571' => 'rch', 'RcHm_v2.0_Chr4g0416551' => 'rch', 'RcHm_v2.0_Chr5g0065831' => 'rch', 'Rhsim01G0230500' => 'rsi', 'Rhsim05G0194000' => 'rsi', 'Rhsim08G0250400' => 'rsi', 'Sabra02G0131000' => 'sbr', 'Sabra06G0066300' => 'sbr', 'Sabra08G0115500' => 'sbr', 'Sabra09G0023900' => 'sbr', 'Sabra10G0054000' => 'sbr', 'Sabra14G0081500' => 'sbr', 'Sabra16G0147100' => 'sbr', 'SalBow2G2957' => 'sbo', 'SalBow4G3320' => 'sbo', 'SalBow8G1894' => 'sbo', 'Sc07g0007950' => 'sci', 'Sc12g0001360' => 'sci', 'Sc13g0004330' => 'sci', 'Sc20g0005010' => 'sci', 'Sed0000361' => 'sed', 'Sed0001706' => 'sed', 'Sed0002422' => 'sed', 'Sed0004029' => 'sed', 'Sed0004602' => 'sed', 'Sed0004943' => 'sed', 'Sed0008646' => 'sed', 'Sed0023313' => 'sed', 'Sed0024843' => 'sed', 'SEGI_00081' => 'sgi', 'SEGI_00947' => 'sgi', 'SEGI_04046' => 'sgi', 'SEGI_06880' => 'sgi', 'SEGI_09736' => 'sgi', 'SEGI_12741' => 'sgi', 'SEGI_14530' => 'sgi', 'SEGI_20705' => 'sgi', 'SEGI_26088' => 'sgi', 'SEGI_28323' => 'sgi', 'SEGI_33343' => 'sgi', 'SGA_v2.0_scaffold126G33775' => 'sas', 'SGA_v2.0_scaffold2G01337' => 'sas', 'SGA_v2.0_scaffold38G15006' => 'sas', 'SGA_v2.0_scaffold39G15264' => 'sas', 'SGA_v2.0_scaffold453G51880' => 'sas', 'SHI12696' => 'shi', 'SMO367G1096' => 'smo', 'Solyc01g068630.3' => 'sly', 'Solyc05g011880.3' => 'sly', 'Solyc06g076300.3' => 'sly', 'Solyc09g010940.4' => 'sly', 'Solyc09g075890.3' => 'sly', 'Sopen01g030560' => 'spe', 'Sopen05g006630' => 'spe', 'Sopen06g032720' => 'spe', 'Sopen09g005660' => 'spe', 'Sopen09g030690' => 'spe', 'Sp4g14540' => 'spa', 'Sp4g20030' => 'spa', 'Sp5g01320' => 'spa', 'Sp6g21170' => 'spa', 'Sp6g21180' => 'spa', 'Sp6g21190' => 'spa', 'Sp6g40220' => 'spa', 'TAR362G0122' => 'tar', 'TAR362G1338' => 'tar', 'TAR369G0590' => 'tar', 'TAR371G0824' => 'tar', 'TAR622G1429' => 'tar', 'TAR623G0734' => 'tar', 'TAR625G0441' => 'tar', 'TAR629G0976' => 'tar', 'TAR633G1195' => 'tar', 'TAR636G2660' => 'tar', 'THA.LOC104799440' => 'tha', 'THA.LOC104800966' => 'tha', 'THA.LOC104806559' => 'tha', 'THA.LOC104810765' => 'tha', 'THA.LOC104816266' => 'tha', 'THA.LOC104817419' => 'tha', 'THA.LOC104827021' => 'tha', 'Thecc.01G327400' => 'tca', 'Thecc.04G229200' => 'tca', 'Thecc.05G037400' => 'tca', 'Thecc.09G318600' => 'tca', 'Thecc.09G318700' => 'tca', 'Thhalv10006238m.g' => 'esa', 'Thhalv10014321m.g' => 'esa', 'Thhalv10014335m.g' => 'esa', 'Thhalv10015826m.g' => 'esa', 'Thhalv10017107m.g' => 'esa', 'Thhalv10017180m.g' => 'esa', 'Thhalv10029339m.g' => 'esa', 'TPR.G1699' => 'tpr', 'TPR.G23609' => 'tpr', 'TPR.G3081' => 'tpr', 'TPR.G40397' => 'tpr', 'TPR.G5522' => 'tpr', 'TPR.G5618' => 'tpr', 'TPR.G5626' => 'tpr', 'TWI09G1632' => 'twi', 'TWI23G1230' => 'twi', 'TWI53G1064' => 'twi', 'TWI59G0751' => 'twi', 'TWI74G0947' => 'twi', 'TWI77G0337' => 'twi', 'TWI79G1254' => 'twi', 'unitig_0.g2341' => 'ugi', 'unitig_26.g10006' => 'ugi', 'unitig_26.g10008' => 'ugi', 'unitig_26.g9192' => 'ugi', 'vmacro14547' => 'vma', 'vmacro15333' => 'vma', 'vmacro18743' => 'vma', 'vmacro20166' => 'vma', 'VMungo0331G0523' => 'vmu', 'VMungo0331G1202' => 'vmu', 'VMungo0720G1228' => 'vmu', 'VMungo0720G1514' => 'vmu', 'VMungo1080G0169' => 'vmu', 'VMungo1127G1475' => 'vmu', 'VMungo1383G1208' => 'vmu', 'VMungo1383G1698' => 'vmu', 'Zm00001eb012270' => 'zma', 'Zm00001eb054100' => 'zma', 'Zm00001eb063350' => 'zma', 'Zm00001eb328560' => 'zma', 'Zm00001eb342820' => 'zma', 'Zm00001eb362210' => 'zma', 'Zm00001eb397730' => 'zma', 'Zm00001eb399750' => 'zma' ), 'gf_id' => 'HOM05D000959', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000959' ), 'data_identifier' => 'HOM05D000959', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000959', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '622', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p07100' => 'bna', 'A03p11720' => 'bna', 'A05p08300' => 'bna', 'A05p13380' => 'bna', 'A09p54130' => 'bna', 'A10p16690' => 'bna', 'A10p16700' => 'bna', 'A10p33390' => 'bna', 'Aa31LG10G16020' => 'aar', 'Aa31LG1G11810' => 'aar', 'Aa31LG1G11830' => 'aar', 'Aa31LG1G22510' => 'aar', 'Aa31LG5G4890' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5793' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2310' => 'aag', 'Actinidia08499' => 'ach', 'Actinidia11262' => 'ach', 'Actinidia23926' => 'ach', 'Actinidia34420' => 'ach', 'Actinidia36970' => 'ach', 'Ah.02g111220' => 'amhyb', 'Ah.15g097750' => 'amhyb', 'AL4G27500' => 'aly', 'AL6G11470' => 'aly', 'AL8G35950' => 'aly', 'AL8G35960' => 'aly', 'AL8G35970' => 'aly', 'Aqoxy1G00912' => 'aox', 'Aqoxy2G02253' => 'aox', 'Aqoxy2G02411' => 'aox', 'Aqoxy5G00485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BZ66YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K8ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM4FUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6BF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HFV7XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25JBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0YNNV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MAKK6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P70IT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP2Z6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V61LZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YWP64R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3S9AI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7PGHH' => 'arhy', 'AT2G32150' => 'ath', 'AT3G62040' => 'ath', 'AT5G02230' => 'ath', 'AT5G59480' => 'ath', 'AT5G59490' => 'ath', 'ATR0332G060' => 'atr', 'ATR0559G190' => 'atr', 'ATR0693G294' => 'atr', 'Atru.chr3.3975' => 'acertr', 'Atru.chr3.3976' => 'acertr', 'Atru.chr3.3977' => 'acertr', 'Atru.chr4.2498' => 'acertr', 'Atru.chr5.838' => 'acertr', 'Atru.chr8.1990' => 'acertr', 'Atru.chr8.1991' => 'acertr', 'Atru.chr8.1992' => 'acertr', 'AUR62001759' => 'cqu', 'AUR62009545' => 'cqu', 'AUR62010474' => 'cqu', 'AUR62025820' => 'cqu', 'AUR62030422' => 'cqu', 'AUR62033605' => 'cqu', 'AUR62038615' => 'cqu', 'AUR62041347' => 'cqu', 'BcaB01g04574' => 'bca', 'BcaB02g09263' => 'bca', 'BcaB02g10453' => 'bca', 'BcaB05g22513' => 'bca', 'BcaB08g36253' => 'bca', 'BcaB08g36254' => 'bca', 'BcaC01g06519' => 'bca', 'BcaC02g11889' => 'bca', 'BcaC03g14010' => 'bca', 'BcaC03g18439' => 'bca', 'BcaC04g19765' => 'bca', 'BcaC09g48432' => 'bca', 'BcaNung07302' => 'bca', 'BolC2t06040H' => 'bol', 'BolC2t07346H' => 'bol', 'BolC3t13817H' => 'bol', 'BolC4t22625H' => 'bol', 'BolC4t23297H' => 'bol', 'BolC8t51278H' => 'bol', 'BolC9t58050H' => 'bol', 'BolC9t58051H' => 'bol', 'BolC9t60163H' => 'bol', 'BraA02t04712Z' => 'bra', 'BraA02t05791Z' => 'bra', 'BraA03t10483Z' => 'bra', 'BraA05t19795Z' => 'bra', 'BraA05t20276Z' => 'bra', 'BraA09t40827Z' => 'bra', 'BraA10t43750Z' => 'bra', 'BraA10t43751Z' => 'bra', 'BraA10t45370Z' => 'bra', 'C02p00400' => 'bna', 'C02p12460' => 'bna', 'C03p13680' => 'bna', 'C04p10270' => 'bna', 'C04p17500' => 'bna', 'C08p37010' => 'bna', 'C09p51880' => 'bna', 'C09p51890' => 'bna', 'C09p74300' => 'bna', 'CAN.G179.26' => 'can', 'CAN.G3384.1' => 'can', 'CAN.G394.68' => 'can', 'CAN.G907.13' => 'can', 'CANSAT11G0012' => 'cansat', 'CANSAT25G1586' => 'cansat', 'CANSAT35G0735' => 'cansat', 'CANSAT54G0556' => 'cansat', 'CANSAT64G0356' => 'cansat', 'CANSAT78G2042' => 'cansat', 'CARHR125920' => 'chi', 'CARHR131910' => 'chi', 'CARHR172390' => 'chi', 'CARHR211140' => 'chi', 'CARHR285850' => 'chi', 'CARHR285860' => 'chi', 'Carub.0004s1347' => 'cru', 'Carub.0004s1960' => 'cru', 'Carub.0005s2880' => 'cru', 'Carub.0006s0107' => 'cru', 'Carub.0008s2015' => 'cru', 'Carub.0008s2016' => 'cru', 'Carub.0008s2017' => 'cru', 'Ca_01315_v3' => 'car', 'Ca_05063_v3' => 'car', 'Ca_10231_v3' => 'car', 'Ca_10913_v3' => 'car', 'Ca_19156_v3' => 'car', 'Ca_23644_v3' => 'car', 'Ca_26735_v3' => 'car', 'Cc01_g13130' => 'ccan', 'Cc02_g21690' => 'ccan', 'Cc03_g03600' => 'ccan', 'Cc06_g02510' => 'ccan', 'CDE02G1265' => 'cde', 'CDE05G0415' => 'cde', 'CDE08G1082' => 'cde', 'Cfa005780' => 'cfa', 'Cfa011522' => 'cfa', 'Cfa011523' => 'cfa', 'Cfa015627' => 'cfa', 'Cfa017359' => 'cfa', 'Ciclev10005687m.g' => 'ccl', 'Ciclev10012173m.g' => 'ccl', 'Ciclev10021621m.g' => 'ccl', 'Ciclev10028968m.g' => 'ccl', 'Ciclev10029907m.g' => 'ccl', 'CiPaw.01G164800' => 'cil', 'CiPaw.07G083700' => 'cil', 'CiPaw.07G127000' => 'cil', 'CiPaw.07G136900' => 'cil', 'CiPaw.08G081700' => 'cil', 'CiPaw.09G194600' => 'cil', 'CiPaw.10G146500' => 'cil', 'CiPaw.13G091500' => 'cil', 'CiPaw.13G091600' => 'cil', 'ClCG00G003390' => 'cla', 'ClCG01G007220' => 'cla', 'ClCG03G001370' => 'cla', 'ClCG04G008100' => 'cla', 'ClCG06G006110' => 'cla', 'ClCG06G006130' => 'cla', 'ClCG10G021210' => 'cla', 'COL.COLO4_07648' => 'col', 'COL.COLO4_07650' => 'col', 'COL.COLO4_07651' => 'col', 'COL.COLO4_14780' => 'col', 'COL.COLO4_18546' => 'col', 'COL.COLO4_18547' => 'col', 'COL.COLO4_23103' => 'col', 'COL.COLO4_30419' => 'col', 'COL.COLO4_34232' => 'col', 'Cpa.g.sc169.20' => 'cpa', 'Cpa.g.sc57.45' => 'cpa', 'Cpa.g.sc58.124' => 'cpa', 'Cpa.g.sc58.125' => 'cpa', 'Cpa.g.sc81.118' => 'cpa', 'Cpa.g.sc81.119' => 'cpa', 'Cre12.g524700' => 'cre', 'CsaV3_1G034430' => 'csa', 'CsaV3_1G034440' => 'csa', 'CsaV3_1G034450' => 'csa', 'CsaV3_3G034830' => 'csa', 'CsaV3_4G025090' => 'csa', 'CsaV3_5G018660' => 'csa', 'CsaV3_6G038160' => 'csa', 'CSS0003447' => 'camsi', 'CSS0017840' => 'camsi', 'CSS0019260' => 'camsi', 'CSS0040375' => 'camsi', 'CSS0042533' => 'camsi', 'DCAR_005960' => 'dca', 'DCAR_012104' => 'dca', 'DCAR_012105' => 'dca', 'DCAR_012293' => 'dca', 'DCAR_015632' => 'dca', 'DCAR_024602' => 'dca', 'DCAR_028752' => 'dca', 'Dinv06261' => 'din', 'Dinv13982' => 'din', 'Dinv17029' => 'din', 'Dinv18463' => 'din', 'Dinv33181' => 'din', 'Dinv35585' => 'din', 'Dinv37161' => 'din', 'Dinv42977' => 'din', 'Dinv43122' => 'din', 'Dinv44517' => 'din', 'Duzib093G0256' => 'dzi', 'Duzib106G1254' => 'dzi', 'Duzib128G1789' => 'dzi', 'Duzib133G0633' => 'dzi', 'Duzib138G0510' => 'dzi', 'Duzib150G1084' => 'dzi', 'Duzib168G0488' => 'dzi', 'Duzib168G1523' => 'dzi', 'Duzib170G0133' => 'dzi', 'ECA234G1433' => 'eca', 'ECA236G1432' => 'eca', 'ECA236G2256' => 'eca', 'ECA236G2365' => 'eca', 'ECA236G4830' => 'eca', 'ECA248G1505' => 'eca', 'EL10Ac3g06431' => 'bvu', 'EL10Ac5g12577' => 'bvu', 'EL10Ac6g13533' => 'bvu', 'EL10Ac7g16045' => 'bvu', 'Eucgr.A01281' => 'egr', 'Eucgr.B02326' => 'egr', 'Eucgr.H03532' => 'egr', 'Eucgr.K00553' => 'egr', 'Eucgr.K03116' => 'egr', 'FAN02G3963' => 'fan', 'FAN05G0438' => 'fan', 'FAN09G2434' => 'fan', 'FAN12G3984' => 'fan', 'FAN14G0798' => 'fan', 'FAN17G0652' => 'fan', 'FAN19G1988' => 'fan', 'FAN22G0632' => 'fan', 'FAN23G0387' => 'fan', 'FAN26G1323' => 'fan', 'FAN28G0666' => 'fan', 'FvH4_1g26080' => 'fve', 'FvH4_3g36780' => 'fve', 'FvH4_4g15270' => 'fve', 'FvH4_6g13490' => 'fve', 'Glyma.01G098700' => 'gma', 'Glyma.03G065900' => 'gma', 'Glyma.03G073754' => 'gma', 'Glyma.03G073758' => 'gma', 'Glyma.03G083200' => 'gma', 'Glyma.03G225500' => 'gma', 'Glyma.05G037766' => 'gma', 'Glyma.07G133500' => 'gma', 'Glyma.10G139400' => 'gma', 'Glyma.10G248900' => 'gma', 'Glyma.11G137800' => 'gma', 'Glyma.12G061300' => 'gma', 'Glyma.13G337900' => 'gma', 'Glyma.15G036600' => 'gma', 'Glyma.18G182800' => 'gma', 'Glyma.19G222500' => 'gma', 'Glyma.20G144800' => 'gma', 'Gohir.A01G222000' => 'ghi', 'Gohir.A03G044000' => 'ghi', 'Gohir.A03G044100' => 'ghi', 'Gohir.A04G083100' => 'ghi', 'Gohir.A07G127200' => 'ghi', 'Gohir.A07G132400' => 'ghi', 'Gohir.A08G000700' => 'ghi', 'Gohir.A11G327300' => 'ghi', 'Gohir.D01G211500' => 'ghi', 'Gohir.D03G123400' => 'ghi', 'Gohir.D03G123500' => 'ghi', 'Gohir.D04G121800' => 'ghi', 'Gohir.D07G131500' => 'ghi', 'Gohir.D07G136600' => 'ghi', 'Gohir.D08G011600' => 'ghi', 'Gohir.D11G346200' => 'ghi', 'Gorai.001G142800' => 'gra', 'Gorai.001G148700' => 'gra', 'Gorai.002G257300' => 'gra', 'Gorai.003G130000' => 'gra', 'Gorai.003G130100' => 'gra', 'Gorai.004G005300' => 'gra', 'Gorai.007G376500' => 'gra', 'Gorai.012G104700' => 'gra', 'GSVIVG01017946001' => 'vvi', 'GSVIVG01024928001' => 'vvi', 'GSVIVG01028227001' => 'vvi', 'GSVIVG01034151001' => 'vvi', 'HanXRQChr05g0135031' => 'han', 'HanXRQChr05g0135041' => 'han', 'HanXRQChr05g0140021' => 'han', 'HanXRQChr06g0178981' => 'han', 'HanXRQChr07g0188251' => 'han', 'HanXRQChr08g0235311' => 'han', 'HanXRQChr09g0271011' => 'han', 'HanXRQChr10g0293321' => 'han', 'HanXRQChr13g0388171' => 'han', 'Haze_00916' => 'cav', 'Haze_05063' => 'cav', 'Haze_20814' => 'cav', 'Haze_24128' => 'cav', 'Hma1.2p1_0745F.1_g212010' => 'hma', 'Hma1.2p1_0757F.1_g213260' => 'hma', 'Hma1.2p1_0936F.1_g238840' => 'hma', 'Hma1.2p1_1735F.1_g299890' => 'hma', 'Hma1.2p1_1861F.1_g305685' => 'hma', 'HPP92_003397' => 'vpl', 'HPP92_012597' => 'vpl', 'HPP92_015520' => 'vpl', 'HPP92_015539' => 'vpl', 'HPP92_020373' => 'vpl', 'Hund04938' => 'sun', 'Hund10677' => 'sun', 'Hund11033' => 'sun', 'Hund12155' => 'sun', 'Lalb_Chr01g0022551' => 'lal', 'Lalb_Chr03g0042341' => 'lal', 'Lalb_Chr07g0192931' => 'lal', 'Lalb_Chr12g0209551' => 'lal', 'Lalb_Chr19g0125251' => 'lal', 'Lalb_Chr19g0137891' => 'lal', 'Lalb_Chr21g0304641' => 'lal', 'Lalb_Chr21g0309881' => 'lal', 'Lj1A5T12' => 'lonja', 'Lj1C148G10' => 'lonja', 'Lj2A93T83' => 'lonja', 'Lj3A738G68' => 'lonja', 'Lj3C966T1' => 'lonja', 'Lj3g0018958' => 'lja', 'Lj3g0021831' => 'lja', 'Lj3g0025443' => 'lja', 'Lj4g0026809' => 'lja', 'Lj5g0012558' => 'lja', 'Lj5g0021586' => 'lja', 'Lsat_1_v5_gn_5_156840' => 'lsa', 'Lsat_1_v5_gn_8_73460' => 'lsa', 'Lsat_1_v5_gn_8_73481' => 'lsa', 'Lsat_1_v5_gn_9_31601' => 'lsa', 'Lsat_1_v5_gn_9_77320' => 'lsa', 'Manes.01G171300' => 'mes', 'Manes.01G171400' => 'mes', 'Manes.01G236100' => 'mes', 'Manes.02G130500' => 'mes', 'Manes.02G130600' => 'mes', 'Manes.03G180200' => 'mes', 'Manes.05G007000' => 'mes', 'Manes.08G084400' => 'mes', 'Manes.09G092600' => 'mes', 'Manes.15G027900' => 'mes', 'MBI04_g40948_MAGBIO' => 'mbi', 'MBI14_g12123_MAGBIO' => 'mbi', 'MBI18_g28915_MAGBIO' => 'mbi', 'MCO09G053' => 'mco', 'MCO11G782' => 'mco', 'MCO15G215' => 'mco', 'MD03G1088500' => 'mdo', 'MD03G1088600' => 'mdo', 'MD04G1130800' => 'mdo', 'MD09G1291700' => 'mdo', 'MD11G1097500' => 'mdo', 'MD11G1097600' => 'mdo', 'MD12G1143900' => 'mdo', 'MD13G1191400' => 'mdo', 'MD16G1191500' => 'mdo', 'Medtr1g085570' => 'mtr', 'Medtr1g104610' => 'mtr', 'Medtr2g097520' => 'mtr', 'Medtr4g021800' => 'mtr', 'Medtr4g021825' => 'mtr', 'Medtr4g064270' => 'mtr', 'Medtr4g064380' => 'mtr', 'Medtr7g062150' => 'mtr', 'MELO3C003138.2' => 'cme', 'MELO3C005187.2' => 'cme', 'MELO3C009252.2' => 'cme', 'MELO3C014481.2' => 'cme', 'MELO3C020616.2' => 'cme', 'MELO3C020617.2' => 'cme', 'MELO3C020618.2' => 'cme', 'Migut.G00328' => 'egut', 'Migut.J00320' => 'egut', 'Migut.L01000' => 'egut', 'Migut.L01953' => 'egut', 'MSTRG.10253' => 'ama', 'MSTRG.19077' => 'ama', 'MSTRG.26780' => 'ama', 'MSTRG.4023' => 'ama', 'MSTRG.5655' => 'ama', 'MSTRG.9992' => 'ama', 'Nitab4.5_0000043g0310' => 'nta', 'Nitab4.5_0000463g0080' => 'nta', 'Nitab4.5_0000705g0170' => 'nta', 'Nitab4.5_0001326g0060' => 'nta', 'Nitab4.5_0001628g0030' => 'nta', 'Nitab4.5_0002103g0110' => 'nta', 'Nitab4.5_0002946g0030' => 'nta', 'Nitab4.5_0004639g0030' => 'nta', 'Nn2g11149' => 'nnu', 'Nn2g13389' => 'nnu', 'Nn4g25326' => 'nnu', 'Nn4g26290' => 'nnu', 'Nn5g29865' => 'nnu', 'Oeu004163.1' => 'oeu', 'Oeu006901.1' => 'oeu', 'Oeu010096.1' => 'oeu', 'Oeu024340.1' => 'oeu', 'Oeu048369.1' => 'oeu', 'Os01g0973000' => 'osa', 'Os03g0273800' => 'osa', 'Os03g0701200' => 'osa', 'Os03g0834050' => 'osa', 'Os07g0634400' => 'osa', 'Peaxi162Scf00092g01414' => 'pax', 'Peaxi162Scf00165g00818' => 'pax', 'Peaxi162Scf00309g00516' => 'pax', 'Peaxi162Scf00774g00218' => 'pax', 'PGR004G1824' => 'pgr', 'PGR004G2606' => 'pgr', 'PGR031G2716' => 'pgr', 'PGR102G2460' => 'pgr', 'PGR142G2599' => 'pgr', 'PGSC0003DMG400000843' => 'stu', 'PGSC0003DMG400008829' => 'stu', 'PGSC0003DMG400030418' => 'stu', 'PGSC0003DMG400031834' => 'stu', 'PGSC0003DMG401028300' => 'stu', 'PGSC0003DMG402028300' => 'stu', 'Phvul.001G219300' => 'pvu', 'Phvul.007G056000' => 'pvu', 'Phvul.007G208000' => 'pvu', 'Phvul.008G119500' => 'pvu', 'Phvul.010G011200' => 'pvu', 'Phvul.010G014800' => 'pvu', 'Phvul.011G062900' => 'pvu', 'Phvul.L007043' => 'pvu', 'Potri.001G242300' => 'ptr', 'Potri.002G185300' => 'ptr', 'Potri.006G086900' => 'ptr', 'Potri.008G151700' => 'ptr', 'Potri.009G033500' => 'ptr', 'Potri.010G089300' => 'ptr', 'Potri.014G110800' => 'ptr', 'Pp3c27_8130' => 'ppa', 'Pp3c6_27410' => 'ppa', 'PRCOL_00001659' => 'pco', 'PRCOL_00001927' => 'pco', 'PRCOL_00003649' => 'pco', 'Prupe.1G011600' => 'ppe', 'Prupe.3G000800' => 'ppe', 'Prupe.3G001100' => 'ppe', 'Prupe.6G072700' => 'ppe', 'Prupe.6G072800' => 'ppe', 'Prupe.6G257300' => 'ppe', 'Prupe.8G033000' => 'ppe', 'Psat0s2633g0080' => 'psa', 'Psat0s3396g0080' => 'psa', 'Psat0s3396g0200' => 'psa', 'Psat3g139080' => 'psa', 'Psat5g285080' => 'psa', 'Psat6g157760' => 'psa', 'Psat6g208440' => 'psa', 'Psat7g215320' => 'psa', 'Psat7g215400' => 'psa', 'Psat7g235600' => 'psa', 'Psat7g235760' => 'psa', 'PSO063G4603' => 'pso', 'PSO210G0182' => 'pso', 'PSO210G0196' => 'pso', 'PSO339G0394' => 'pso', 'PSO339G4127' => 'pso', 'PSO513G0064' => 'pso', 'PSO761G0079' => 'pso', 'QL01p031003' => 'qlo', 'QL01p031078' => 'qlo', 'QL06p003004' => 'qlo', 'QL07p048731' => 'qlo', 'QL09p037427' => 'qlo', 'RcHm_v2.0_Chr3g0466361' => 'rch', 'RcHm_v2.0_Chr3g0485571' => 'rch', 'RcHm_v2.0_Chr4g0416551' => 'rch', 'RcHm_v2.0_Chr5g0065831' => 'rch', 'Rhsim01G0230500' => 'rsi', 'Rhsim05G0194000' => 'rsi', 'Rhsim08G0250400' => 'rsi', 'Sabra02G0131000' => 'sbr', 'Sabra06G0066300' => 'sbr', 'Sabra08G0115500' => 'sbr', 'Sabra09G0023900' => 'sbr', 'Sabra10G0054000' => 'sbr', 'Sabra14G0081500' => 'sbr', 'Sabra16G0147100' => 'sbr', 'SalBow2G2957' => 'sbo', 'SalBow4G3320' => 'sbo', 'SalBow8G1894' => 'sbo', 'Sc07g0007950' => 'sci', 'Sc12g0001360' => 'sci', 'Sc13g0004330' => 'sci', 'Sc20g0005010' => 'sci', 'Sed0000361' => 'sed', 'Sed0001706' => 'sed', 'Sed0002422' => 'sed', 'Sed0004029' => 'sed', 'Sed0004602' => 'sed', 'Sed0004943' => 'sed', 'Sed0008646' => 'sed', 'Sed0023313' => 'sed', 'Sed0024843' => 'sed', 'SEGI_00081' => 'sgi', 'SEGI_00947' => 'sgi', 'SEGI_04046' => 'sgi', 'SEGI_06880' => 'sgi', 'SEGI_09736' => 'sgi', 'SEGI_12741' => 'sgi', 'SEGI_14530' => 'sgi', 'SEGI_20705' => 'sgi', 'SEGI_26088' => 'sgi', 'SEGI_28323' => 'sgi', 'SEGI_33343' => 'sgi', 'SGA_v2.0_scaffold126G33775' => 'sas', 'SGA_v2.0_scaffold2G01337' => 'sas', 'SGA_v2.0_scaffold38G15006' => 'sas', 'SGA_v2.0_scaffold39G15264' => 'sas', 'SGA_v2.0_scaffold453G51880' => 'sas', 'SHI12696' => 'shi', 'SMO367G1096' => 'smo', 'Solyc01g068630.3' => 'sly', 'Solyc05g011880.3' => 'sly', 'Solyc06g076300.3' => 'sly', 'Solyc09g010940.4' => 'sly', 'Solyc09g075890.3' => 'sly', 'Sopen01g030560' => 'spe', 'Sopen05g006630' => 'spe', 'Sopen06g032720' => 'spe', 'Sopen09g005660' => 'spe', 'Sopen09g030690' => 'spe', 'Sp4g14540' => 'spa', 'Sp4g20030' => 'spa', 'Sp5g01320' => 'spa', 'Sp6g21170' => 'spa', 'Sp6g21180' => 'spa', 'Sp6g21190' => 'spa', 'Sp6g40220' => 'spa', 'TAR362G0122' => 'tar', 'TAR362G1338' => 'tar', 'TAR369G0590' => 'tar', 'TAR371G0824' => 'tar', 'TAR622G1429' => 'tar', 'TAR623G0734' => 'tar', 'TAR625G0441' => 'tar', 'TAR629G0976' => 'tar', 'TAR633G1195' => 'tar', 'TAR636G2660' => 'tar', 'THA.LOC104799440' => 'tha', 'THA.LOC104800966' => 'tha', 'THA.LOC104806559' => 'tha', 'THA.LOC104810765' => 'tha', 'THA.LOC104816266' => 'tha', 'THA.LOC104817419' => 'tha', 'THA.LOC104827021' => 'tha', 'Thecc.01G327400' => 'tca', 'Thecc.04G229200' => 'tca', 'Thecc.05G037400' => 'tca', 'Thecc.09G318600' => 'tca', 'Thecc.09G318700' => 'tca', 'Thhalv10006238m.g' => 'esa', 'Thhalv10014321m.g' => 'esa', 'Thhalv10014335m.g' => 'esa', 'Thhalv10015826m.g' => 'esa', 'Thhalv10017107m.g' => 'esa', 'Thhalv10017180m.g' => 'esa', 'Thhalv10029339m.g' => 'esa', 'TPR.G1699' => 'tpr', 'TPR.G23609' => 'tpr', 'TPR.G3081' => 'tpr', 'TPR.G40397' => 'tpr', 'TPR.G5522' => 'tpr', 'TPR.G5618' => 'tpr', 'TPR.G5626' => 'tpr', 'TWI09G1632' => 'twi', 'TWI23G1230' => 'twi', 'TWI53G1064' => 'twi', 'TWI59G0751' => 'twi', 'TWI74G0947' => 'twi', 'TWI77G0337' => 'twi', 'TWI79G1254' => 'twi', 'unitig_0.g2341' => 'ugi', 'unitig_26.g10006' => 'ugi', 'unitig_26.g10008' => 'ugi', 'unitig_26.g9192' => 'ugi', 'vmacro14547' => 'vma', 'vmacro15333' => 'vma', 'vmacro18743' => 'vma', 'vmacro20166' => 'vma', 'VMungo0331G0523' => 'vmu', 'VMungo0331G1202' => 'vmu', 'VMungo0720G1228' => 'vmu', 'VMungo0720G1514' => 'vmu', 'VMungo1080G0169' => 'vmu', 'VMungo1127G1475' => 'vmu', 'VMungo1383G1208' => 'vmu', 'VMungo1383G1698' => 'vmu', 'Zm00001eb012270' => 'zma', 'Zm00001eb054100' => 'zma', 'Zm00001eb063350' => 'zma', 'Zm00001eb328560' => 'zma', 'Zm00001eb342820' => 'zma', 'Zm00001eb362210' => 'zma', 'Zm00001eb397730' => 'zma', 'Zm00001eb399750' => 'zma' ) $gf_id = 'HOM05D000959' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000959' ) $data_identifier = 'HOM05D000959' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 5, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 5, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 10, 'mbi' => (int) 3, 'mco' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 2, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 3, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 11, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399750' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000959', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '622', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p07100' => 'bna', 'A03p11720' => 'bna', 'A05p08300' => 'bna', 'A05p13380' => 'bna', 'A09p54130' => 'bna', 'A10p16690' => 'bna', 'A10p16700' => 'bna', 'A10p33390' => 'bna', 'Aa31LG10G16020' => 'aar', 'Aa31LG1G11810' => 'aar', 'Aa31LG1G11830' => 'aar', 'Aa31LG1G22510' => 'aar', 'Aa31LG5G4890' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5793' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2310' => 'aag', 'Actinidia08499' => 'ach', 'Actinidia11262' => 'ach', 'Actinidia23926' => 'ach', 'Actinidia34420' => 'ach', 'Actinidia36970' => 'ach', 'Ah.02g111220' => 'amhyb', 'Ah.15g097750' => 'amhyb', 'AL4G27500' => 'aly', 'AL6G11470' => 'aly', 'AL8G35950' => 'aly', 'AL8G35960' => 'aly', 'AL8G35970' => 'aly', 'Aqoxy1G00912' => 'aox', 'Aqoxy2G02253' => 'aox', 'Aqoxy2G02411' => 'aox', 'Aqoxy5G00485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BZ66YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K8ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM4FUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6BF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HFV7XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25JBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0YNNV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MAKK6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P70IT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP2Z6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V61LZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YWP64R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3S9AI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7PGHH' => 'arhy', 'AT2G32150' => 'ath', 'AT3G62040' => 'ath', 'AT5G02230' => 'ath', 'AT5G59480' => 'ath', 'AT5G59490' => 'ath', 'ATR0332G060' => 'atr', 'ATR0559G190' => 'atr', 'ATR0693G294' => 'atr', 'Atru.chr3.3975' => 'acertr', 'Atru.chr3.3976' => 'acertr', 'Atru.chr3.3977' => 'acertr', 'Atru.chr4.2498' => 'acertr', 'Atru.chr5.838' => 'acertr', 'Atru.chr8.1990' => 'acertr', 'Atru.chr8.1991' => 'acertr', 'Atru.chr8.1992' => 'acertr', 'AUR62001759' => 'cqu', 'AUR62009545' => 'cqu', 'AUR62010474' => 'cqu', 'AUR62025820' => 'cqu', 'AUR62030422' => 'cqu', 'AUR62033605' => 'cqu', 'AUR62038615' => 'cqu', 'AUR62041347' => 'cqu', 'BcaB01g04574' => 'bca', 'BcaB02g09263' => 'bca', 'BcaB02g10453' => 'bca', 'BcaB05g22513' => 'bca', 'BcaB08g36253' => 'bca', 'BcaB08g36254' => 'bca', 'BcaC01g06519' => 'bca', 'BcaC02g11889' => 'bca', 'BcaC03g14010' => 'bca', 'BcaC03g18439' => 'bca', 'BcaC04g19765' => 'bca', 'BcaC09g48432' => 'bca', 'BcaNung07302' => 'bca', 'BolC2t06040H' => 'bol', 'BolC2t07346H' => 'bol', 'BolC3t13817H' => 'bol', 'BolC4t22625H' => 'bol', 'BolC4t23297H' => 'bol', 'BolC8t51278H' => 'bol', 'BolC9t58050H' => 'bol', 'BolC9t58051H' => 'bol', 'BolC9t60163H' => 'bol', 'BraA02t04712Z' => 'bra', 'BraA02t05791Z' => 'bra', 'BraA03t10483Z' => 'bra', 'BraA05t19795Z' => 'bra', 'BraA05t20276Z' => 'bra', 'BraA09t40827Z' => 'bra', 'BraA10t43750Z' => 'bra', 'BraA10t43751Z' => 'bra', 'BraA10t45370Z' => 'bra', 'C02p00400' => 'bna', 'C02p12460' => 'bna', 'C03p13680' => 'bna', 'C04p10270' => 'bna', 'C04p17500' => 'bna', 'C08p37010' => 'bna', 'C09p51880' => 'bna', 'C09p51890' => 'bna', 'C09p74300' => 'bna', 'CAN.G179.26' => 'can', 'CAN.G3384.1' => 'can', 'CAN.G394.68' => 'can', 'CAN.G907.13' => 'can', 'CANSAT11G0012' => 'cansat', 'CANSAT25G1586' => 'cansat', 'CANSAT35G0735' => 'cansat', 'CANSAT54G0556' => 'cansat', 'CANSAT64G0356' => 'cansat', 'CANSAT78G2042' => 'cansat', 'CARHR125920' => 'chi', 'CARHR131910' => 'chi', 'CARHR172390' => 'chi', 'CARHR211140' => 'chi', 'CARHR285850' => 'chi', 'CARHR285860' => 'chi', 'Carub.0004s1347' => 'cru', 'Carub.0004s1960' => 'cru', 'Carub.0005s2880' => 'cru', 'Carub.0006s0107' => 'cru', 'Carub.0008s2015' => 'cru', 'Carub.0008s2016' => 'cru', 'Carub.0008s2017' => 'cru', 'Ca_01315_v3' => 'car', 'Ca_05063_v3' => 'car', 'Ca_10231_v3' => 'car', 'Ca_10913_v3' => 'car', 'Ca_19156_v3' => 'car', 'Ca_23644_v3' => 'car', 'Ca_26735_v3' => 'car', 'Cc01_g13130' => 'ccan', 'Cc02_g21690' => 'ccan', 'Cc03_g03600' => 'ccan', 'Cc06_g02510' => 'ccan', 'CDE02G1265' => 'cde', 'CDE05G0415' => 'cde', 'CDE08G1082' => 'cde', 'Cfa005780' => 'cfa', 'Cfa011522' => 'cfa', 'Cfa011523' => 'cfa', 'Cfa015627' => 'cfa', 'Cfa017359' => 'cfa', 'Ciclev10005687m.g' => 'ccl', 'Ciclev10012173m.g' => 'ccl', 'Ciclev10021621m.g' => 'ccl', 'Ciclev10028968m.g' => 'ccl', 'Ciclev10029907m.g' => 'ccl', 'CiPaw.01G164800' => 'cil', 'CiPaw.07G083700' => 'cil', 'CiPaw.07G127000' => 'cil', 'CiPaw.07G136900' => 'cil', 'CiPaw.08G081700' => 'cil', 'CiPaw.09G194600' => 'cil', 'CiPaw.10G146500' => 'cil', 'CiPaw.13G091500' => 'cil', 'CiPaw.13G091600' => 'cil', 'ClCG00G003390' => 'cla', 'ClCG01G007220' => 'cla', 'ClCG03G001370' => 'cla', 'ClCG04G008100' => 'cla', 'ClCG06G006110' => 'cla', 'ClCG06G006130' => 'cla', 'ClCG10G021210' => 'cla', 'COL.COLO4_07648' => 'col', 'COL.COLO4_07650' => 'col', 'COL.COLO4_07651' => 'col', 'COL.COLO4_14780' => 'col', 'COL.COLO4_18546' => 'col', 'COL.COLO4_18547' => 'col', 'COL.COLO4_23103' => 'col', 'COL.COLO4_30419' => 'col', 'COL.COLO4_34232' => 'col', 'Cpa.g.sc169.20' => 'cpa', 'Cpa.g.sc57.45' => 'cpa', 'Cpa.g.sc58.124' => 'cpa', 'Cpa.g.sc58.125' => 'cpa', 'Cpa.g.sc81.118' => 'cpa', 'Cpa.g.sc81.119' => 'cpa', 'Cre12.g524700' => 'cre', 'CsaV3_1G034430' => 'csa', 'CsaV3_1G034440' => 'csa', 'CsaV3_1G034450' => 'csa', 'CsaV3_3G034830' => 'csa', 'CsaV3_4G025090' => 'csa', 'CsaV3_5G018660' => 'csa', 'CsaV3_6G038160' => 'csa', 'CSS0003447' => 'camsi', 'CSS0017840' => 'camsi', 'CSS0019260' => 'camsi', 'CSS0040375' => 'camsi', 'CSS0042533' => 'camsi', 'DCAR_005960' => 'dca', 'DCAR_012104' => 'dca', 'DCAR_012105' => 'dca', 'DCAR_012293' => 'dca', 'DCAR_015632' => 'dca', 'DCAR_024602' => 'dca', 'DCAR_028752' => 'dca', 'Dinv06261' => 'din', 'Dinv13982' => 'din', 'Dinv17029' => 'din', 'Dinv18463' => 'din', 'Dinv33181' => 'din', 'Dinv35585' => 'din', 'Dinv37161' => 'din', 'Dinv42977' => 'din', 'Dinv43122' => 'din', 'Dinv44517' => 'din', 'Duzib093G0256' => 'dzi', 'Duzib106G1254' => 'dzi', 'Duzib128G1789' => 'dzi', 'Duzib133G0633' => 'dzi', 'Duzib138G0510' => 'dzi', 'Duzib150G1084' => 'dzi', 'Duzib168G0488' => 'dzi', 'Duzib168G1523' => 'dzi', 'Duzib170G0133' => 'dzi', 'ECA234G1433' => 'eca', 'ECA236G1432' => 'eca', 'ECA236G2256' => 'eca', 'ECA236G2365' => 'eca', 'ECA236G4830' => 'eca', 'ECA248G1505' => 'eca', 'EL10Ac3g06431' => 'bvu', 'EL10Ac5g12577' => 'bvu', 'EL10Ac6g13533' => 'bvu', 'EL10Ac7g16045' => 'bvu', 'Eucgr.A01281' => 'egr', 'Eucgr.B02326' => 'egr', 'Eucgr.H03532' => 'egr', 'Eucgr.K00553' => 'egr', 'Eucgr.K03116' => 'egr', 'FAN02G3963' => 'fan', 'FAN05G0438' => 'fan', 'FAN09G2434' => 'fan', 'FAN12G3984' => 'fan', 'FAN14G0798' => 'fan', 'FAN17G0652' => 'fan', 'FAN19G1988' => 'fan', 'FAN22G0632' => 'fan', 'FAN23G0387' => 'fan', 'FAN26G1323' => 'fan', 'FAN28G0666' => 'fan', 'FvH4_1g26080' => 'fve', 'FvH4_3g36780' => 'fve', 'FvH4_4g15270' => 'fve', 'FvH4_6g13490' => 'fve', 'Glyma.01G098700' => 'gma', 'Glyma.03G065900' => 'gma', 'Glyma.03G073754' => 'gma', 'Glyma.03G073758' => 'gma', 'Glyma.03G083200' => 'gma', 'Glyma.03G225500' => 'gma', 'Glyma.05G037766' => 'gma', 'Glyma.07G133500' => 'gma', 'Glyma.10G139400' => 'gma', 'Glyma.10G248900' => 'gma', 'Glyma.11G137800' => 'gma', 'Glyma.12G061300' => 'gma', 'Glyma.13G337900' => 'gma', 'Glyma.15G036600' => 'gma', 'Glyma.18G182800' => 'gma', 'Glyma.19G222500' => 'gma', 'Glyma.20G144800' => 'gma', 'Gohir.A01G222000' => 'ghi', 'Gohir.A03G044000' => 'ghi', 'Gohir.A03G044100' => 'ghi', 'Gohir.A04G083100' => 'ghi', 'Gohir.A07G127200' => 'ghi', 'Gohir.A07G132400' => 'ghi', 'Gohir.A08G000700' => 'ghi', 'Gohir.A11G327300' => 'ghi', 'Gohir.D01G211500' => 'ghi', 'Gohir.D03G123400' => 'ghi', 'Gohir.D03G123500' => 'ghi', 'Gohir.D04G121800' => 'ghi', 'Gohir.D07G131500' => 'ghi', 'Gohir.D07G136600' => 'ghi', 'Gohir.D08G011600' => 'ghi', 'Gohir.D11G346200' => 'ghi', 'Gorai.001G142800' => 'gra', 'Gorai.001G148700' => 'gra', 'Gorai.002G257300' => 'gra', 'Gorai.003G130000' => 'gra', 'Gorai.003G130100' => 'gra', 'Gorai.004G005300' => 'gra', 'Gorai.007G376500' => 'gra', 'Gorai.012G104700' => 'gra', 'GSVIVG01017946001' => 'vvi', 'GSVIVG01024928001' => 'vvi', 'GSVIVG01028227001' => 'vvi', 'GSVIVG01034151001' => 'vvi', 'HanXRQChr05g0135031' => 'han', 'HanXRQChr05g0135041' => 'han', 'HanXRQChr05g0140021' => 'han', 'HanXRQChr06g0178981' => 'han', 'HanXRQChr07g0188251' => 'han', 'HanXRQChr08g0235311' => 'han', 'HanXRQChr09g0271011' => 'han', 'HanXRQChr10g0293321' => 'han', 'HanXRQChr13g0388171' => 'han', 'Haze_00916' => 'cav', 'Haze_05063' => 'cav', 'Haze_20814' => 'cav', 'Haze_24128' => 'cav', 'Hma1.2p1_0745F.1_g212010' => 'hma', 'Hma1.2p1_0757F.1_g213260' => 'hma', 'Hma1.2p1_0936F.1_g238840' => 'hma', 'Hma1.2p1_1735F.1_g299890' => 'hma', 'Hma1.2p1_1861F.1_g305685' => 'hma', 'HPP92_003397' => 'vpl', 'HPP92_012597' => 'vpl', 'HPP92_015520' => 'vpl', 'HPP92_015539' => 'vpl', 'HPP92_020373' => 'vpl', 'Hund04938' => 'sun', 'Hund10677' => 'sun', 'Hund11033' => 'sun', 'Hund12155' => 'sun', 'Lalb_Chr01g0022551' => 'lal', 'Lalb_Chr03g0042341' => 'lal', 'Lalb_Chr07g0192931' => 'lal', 'Lalb_Chr12g0209551' => 'lal', 'Lalb_Chr19g0125251' => 'lal', 'Lalb_Chr19g0137891' => 'lal', 'Lalb_Chr21g0304641' => 'lal', 'Lalb_Chr21g0309881' => 'lal', 'Lj1A5T12' => 'lonja', 'Lj1C148G10' => 'lonja', 'Lj2A93T83' => 'lonja', 'Lj3A738G68' => 'lonja', 'Lj3C966T1' => 'lonja', 'Lj3g0018958' => 'lja', 'Lj3g0021831' => 'lja', 'Lj3g0025443' => 'lja', 'Lj4g0026809' => 'lja', 'Lj5g0012558' => 'lja', 'Lj5g0021586' => 'lja', 'Lsat_1_v5_gn_5_156840' => 'lsa', 'Lsat_1_v5_gn_8_73460' => 'lsa', 'Lsat_1_v5_gn_8_73481' => 'lsa', 'Lsat_1_v5_gn_9_31601' => 'lsa', 'Lsat_1_v5_gn_9_77320' => 'lsa', 'Manes.01G171300' => 'mes', 'Manes.01G171400' => 'mes', 'Manes.01G236100' => 'mes', 'Manes.02G130500' => 'mes', 'Manes.02G130600' => 'mes', 'Manes.03G180200' => 'mes', 'Manes.05G007000' => 'mes', 'Manes.08G084400' => 'mes', 'Manes.09G092600' => 'mes', 'Manes.15G027900' => 'mes', 'MBI04_g40948_MAGBIO' => 'mbi', 'MBI14_g12123_MAGBIO' => 'mbi', 'MBI18_g28915_MAGBIO' => 'mbi', 'MCO09G053' => 'mco', 'MCO11G782' => 'mco', 'MCO15G215' => 'mco', 'MD03G1088500' => 'mdo', 'MD03G1088600' => 'mdo', 'MD04G1130800' => 'mdo', 'MD09G1291700' => 'mdo', 'MD11G1097500' => 'mdo', 'MD11G1097600' => 'mdo', 'MD12G1143900' => 'mdo', 'MD13G1191400' => 'mdo', 'MD16G1191500' => 'mdo', 'Medtr1g085570' => 'mtr', 'Medtr1g104610' => 'mtr', 'Medtr2g097520' => 'mtr', 'Medtr4g021800' => 'mtr', 'Medtr4g021825' => 'mtr', 'Medtr4g064270' => 'mtr', 'Medtr4g064380' => 'mtr', 'Medtr7g062150' => 'mtr', 'MELO3C003138.2' => 'cme', 'MELO3C005187.2' => 'cme', 'MELO3C009252.2' => 'cme', 'MELO3C014481.2' => 'cme', 'MELO3C020616.2' => 'cme', 'MELO3C020617.2' => 'cme', 'MELO3C020618.2' => 'cme', 'Migut.G00328' => 'egut', 'Migut.J00320' => 'egut', 'Migut.L01000' => 'egut', 'Migut.L01953' => 'egut', 'MSTRG.10253' => 'ama', 'MSTRG.19077' => 'ama', 'MSTRG.26780' => 'ama', 'MSTRG.4023' => 'ama', 'MSTRG.5655' => 'ama', 'MSTRG.9992' => 'ama', 'Nitab4.5_0000043g0310' => 'nta', 'Nitab4.5_0000463g0080' => 'nta', 'Nitab4.5_0000705g0170' => 'nta', 'Nitab4.5_0001326g0060' => 'nta', 'Nitab4.5_0001628g0030' => 'nta', 'Nitab4.5_0002103g0110' => 'nta', 'Nitab4.5_0002946g0030' => 'nta', 'Nitab4.5_0004639g0030' => 'nta', 'Nn2g11149' => 'nnu', 'Nn2g13389' => 'nnu', 'Nn4g25326' => 'nnu', 'Nn4g26290' => 'nnu', 'Nn5g29865' => 'nnu', 'Oeu004163.1' => 'oeu', 'Oeu006901.1' => 'oeu', 'Oeu010096.1' => 'oeu', 'Oeu024340.1' => 'oeu', 'Oeu048369.1' => 'oeu', 'Os01g0973000' => 'osa', 'Os03g0273800' => 'osa', 'Os03g0701200' => 'osa', 'Os03g0834050' => 'osa', 'Os07g0634400' => 'osa', 'Peaxi162Scf00092g01414' => 'pax', 'Peaxi162Scf00165g00818' => 'pax', 'Peaxi162Scf00309g00516' => 'pax', 'Peaxi162Scf00774g00218' => 'pax', 'PGR004G1824' => 'pgr', 'PGR004G2606' => 'pgr', 'PGR031G2716' => 'pgr', 'PGR102G2460' => 'pgr', 'PGR142G2599' => 'pgr', 'PGSC0003DMG400000843' => 'stu', 'PGSC0003DMG400008829' => 'stu', 'PGSC0003DMG400030418' => 'stu', 'PGSC0003DMG400031834' => 'stu', 'PGSC0003DMG401028300' => 'stu', 'PGSC0003DMG402028300' => 'stu', 'Phvul.001G219300' => 'pvu', 'Phvul.007G056000' => 'pvu', 'Phvul.007G208000' => 'pvu', 'Phvul.008G119500' => 'pvu', 'Phvul.010G011200' => 'pvu', 'Phvul.010G014800' => 'pvu', 'Phvul.011G062900' => 'pvu', 'Phvul.L007043' => 'pvu', 'Potri.001G242300' => 'ptr', 'Potri.002G185300' => 'ptr', 'Potri.006G086900' => 'ptr', 'Potri.008G151700' => 'ptr', 'Potri.009G033500' => 'ptr', 'Potri.010G089300' => 'ptr', 'Potri.014G110800' => 'ptr', 'Pp3c27_8130' => 'ppa', 'Pp3c6_27410' => 'ppa', 'PRCOL_00001659' => 'pco', 'PRCOL_00001927' => 'pco', 'PRCOL_00003649' => 'pco', 'Prupe.1G011600' => 'ppe', 'Prupe.3G000800' => 'ppe', 'Prupe.3G001100' => 'ppe', 'Prupe.6G072700' => 'ppe', 'Prupe.6G072800' => 'ppe', 'Prupe.6G257300' => 'ppe', 'Prupe.8G033000' => 'ppe', 'Psat0s2633g0080' => 'psa', 'Psat0s3396g0080' => 'psa', 'Psat0s3396g0200' => 'psa', 'Psat3g139080' => 'psa', 'Psat5g285080' => 'psa', 'Psat6g157760' => 'psa', 'Psat6g208440' => 'psa', 'Psat7g215320' => 'psa', 'Psat7g215400' => 'psa', 'Psat7g235600' => 'psa', 'Psat7g235760' => 'psa', 'PSO063G4603' => 'pso', 'PSO210G0182' => 'pso', 'PSO210G0196' => 'pso', 'PSO339G0394' => 'pso', 'PSO339G4127' => 'pso', 'PSO513G0064' => 'pso', 'PSO761G0079' => 'pso', 'QL01p031003' => 'qlo', 'QL01p031078' => 'qlo', 'QL06p003004' => 'qlo', 'QL07p048731' => 'qlo', 'QL09p037427' => 'qlo', 'RcHm_v2.0_Chr3g0466361' => 'rch', 'RcHm_v2.0_Chr3g0485571' => 'rch', 'RcHm_v2.0_Chr4g0416551' => 'rch', 'RcHm_v2.0_Chr5g0065831' => 'rch', 'Rhsim01G0230500' => 'rsi', 'Rhsim05G0194000' => 'rsi', 'Rhsim08G0250400' => 'rsi', 'Sabra02G0131000' => 'sbr', 'Sabra06G0066300' => 'sbr', 'Sabra08G0115500' => 'sbr', 'Sabra09G0023900' => 'sbr', 'Sabra10G0054000' => 'sbr', 'Sabra14G0081500' => 'sbr', 'Sabra16G0147100' => 'sbr', 'SalBow2G2957' => 'sbo', 'SalBow4G3320' => 'sbo', 'SalBow8G1894' => 'sbo', 'Sc07g0007950' => 'sci', 'Sc12g0001360' => 'sci', 'Sc13g0004330' => 'sci', 'Sc20g0005010' => 'sci', 'Sed0000361' => 'sed', 'Sed0001706' => 'sed', 'Sed0002422' => 'sed', 'Sed0004029' => 'sed', 'Sed0004602' => 'sed', 'Sed0004943' => 'sed', 'Sed0008646' => 'sed', 'Sed0023313' => 'sed', 'Sed0024843' => 'sed', 'SEGI_00081' => 'sgi', 'SEGI_00947' => 'sgi', 'SEGI_04046' => 'sgi', 'SEGI_06880' => 'sgi', 'SEGI_09736' => 'sgi', 'SEGI_12741' => 'sgi', 'SEGI_14530' => 'sgi', 'SEGI_20705' => 'sgi', 'SEGI_26088' => 'sgi', 'SEGI_28323' => 'sgi', 'SEGI_33343' => 'sgi', 'SGA_v2.0_scaffold126G33775' => 'sas', 'SGA_v2.0_scaffold2G01337' => 'sas', 'SGA_v2.0_scaffold38G15006' => 'sas', 'SGA_v2.0_scaffold39G15264' => 'sas', 'SGA_v2.0_scaffold453G51880' => 'sas', 'SHI12696' => 'shi', 'SMO367G1096' => 'smo', 'Solyc01g068630.3' => 'sly', 'Solyc05g011880.3' => 'sly', 'Solyc06g076300.3' => 'sly', 'Solyc09g010940.4' => 'sly', 'Solyc09g075890.3' => 'sly', 'Sopen01g030560' => 'spe', 'Sopen05g006630' => 'spe', 'Sopen06g032720' => 'spe', 'Sopen09g005660' => 'spe', 'Sopen09g030690' => 'spe', 'Sp4g14540' => 'spa', 'Sp4g20030' => 'spa', 'Sp5g01320' => 'spa', 'Sp6g21170' => 'spa', 'Sp6g21180' => 'spa', 'Sp6g21190' => 'spa', 'Sp6g40220' => 'spa', 'TAR362G0122' => 'tar', 'TAR362G1338' => 'tar', 'TAR369G0590' => 'tar', 'TAR371G0824' => 'tar', 'TAR622G1429' => 'tar', 'TAR623G0734' => 'tar', 'TAR625G0441' => 'tar', 'TAR629G0976' => 'tar', 'TAR633G1195' => 'tar', 'TAR636G2660' => 'tar', 'THA.LOC104799440' => 'tha', 'THA.LOC104800966' => 'tha', 'THA.LOC104806559' => 'tha', 'THA.LOC104810765' => 'tha', 'THA.LOC104816266' => 'tha', 'THA.LOC104817419' => 'tha', 'THA.LOC104827021' => 'tha', 'Thecc.01G327400' => 'tca', 'Thecc.04G229200' => 'tca', 'Thecc.05G037400' => 'tca', 'Thecc.09G318600' => 'tca', 'Thecc.09G318700' => 'tca', 'Thhalv10006238m.g' => 'esa', 'Thhalv10014321m.g' => 'esa', 'Thhalv10014335m.g' => 'esa', 'Thhalv10015826m.g' => 'esa', 'Thhalv10017107m.g' => 'esa', 'Thhalv10017180m.g' => 'esa', 'Thhalv10029339m.g' => 'esa', 'TPR.G1699' => 'tpr', 'TPR.G23609' => 'tpr', 'TPR.G3081' => 'tpr', 'TPR.G40397' => 'tpr', 'TPR.G5522' => 'tpr', 'TPR.G5618' => 'tpr', 'TPR.G5626' => 'tpr', 'TWI09G1632' => 'twi', 'TWI23G1230' => 'twi', 'TWI53G1064' => 'twi', 'TWI59G0751' => 'twi', 'TWI74G0947' => 'twi', 'TWI77G0337' => 'twi', 'TWI79G1254' => 'twi', 'unitig_0.g2341' => 'ugi', 'unitig_26.g10006' => 'ugi', 'unitig_26.g10008' => 'ugi', 'unitig_26.g9192' => 'ugi', 'vmacro14547' => 'vma', 'vmacro15333' => 'vma', 'vmacro18743' => 'vma', 'vmacro20166' => 'vma', 'VMungo0331G0523' => 'vmu', 'VMungo0331G1202' => 'vmu', 'VMungo0720G1228' => 'vmu', 'VMungo0720G1514' => 'vmu', 'VMungo1080G0169' => 'vmu', 'VMungo1127G1475' => 'vmu', 'VMungo1383G1208' => 'vmu', 'VMungo1383G1698' => 'vmu', 'Zm00001eb012270' => 'zma', 'Zm00001eb054100' => 'zma', 'Zm00001eb063350' => 'zma', 'Zm00001eb328560' => 'zma', 'Zm00001eb342820' => 'zma', 'Zm00001eb362210' => 'zma', 'Zm00001eb397730' => 'zma', 'Zm00001eb399750' => 'zma' ), 'gf_id' => 'HOM05D000959', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000959' ), 'data_identifier' => 'HOM05D000959', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000959', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '622', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p07100' => 'bna', 'A03p11720' => 'bna', 'A05p08300' => 'bna', 'A05p13380' => 'bna', 'A09p54130' => 'bna', 'A10p16690' => 'bna', 'A10p16700' => 'bna', 'A10p33390' => 'bna', 'Aa31LG10G16020' => 'aar', 'Aa31LG1G11810' => 'aar', 'Aa31LG1G11830' => 'aar', 'Aa31LG1G22510' => 'aar', 'Aa31LG5G4890' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5793' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2310' => 'aag', 'Actinidia08499' => 'ach', 'Actinidia11262' => 'ach', 'Actinidia23926' => 'ach', 'Actinidia34420' => 'ach', 'Actinidia36970' => 'ach', 'Ah.02g111220' => 'amhyb', 'Ah.15g097750' => 'amhyb', 'AL4G27500' => 'aly', 'AL6G11470' => 'aly', 'AL8G35950' => 'aly', 'AL8G35960' => 'aly', 'AL8G35970' => 'aly', 'Aqoxy1G00912' => 'aox', 'Aqoxy2G02253' => 'aox', 'Aqoxy2G02411' => 'aox', 'Aqoxy5G00485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BZ66YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K8ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM4FUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6BF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HFV7XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25JBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0YNNV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MAKK6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P70IT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP2Z6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V61LZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YWP64R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3S9AI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7PGHH' => 'arhy', 'AT2G32150' => 'ath', 'AT3G62040' => 'ath', 'AT5G02230' => 'ath', 'AT5G59480' => 'ath', 'AT5G59490' => 'ath', 'ATR0332G060' => 'atr', 'ATR0559G190' => 'atr', 'ATR0693G294' => 'atr', 'Atru.chr3.3975' => 'acertr', 'Atru.chr3.3976' => 'acertr', 'Atru.chr3.3977' => 'acertr', 'Atru.chr4.2498' => 'acertr', 'Atru.chr5.838' => 'acertr', 'Atru.chr8.1990' => 'acertr', 'Atru.chr8.1991' => 'acertr', 'Atru.chr8.1992' => 'acertr', 'AUR62001759' => 'cqu', 'AUR62009545' => 'cqu', 'AUR62010474' => 'cqu', 'AUR62025820' => 'cqu', 'AUR62030422' => 'cqu', 'AUR62033605' => 'cqu', 'AUR62038615' => 'cqu', 'AUR62041347' => 'cqu', 'BcaB01g04574' => 'bca', 'BcaB02g09263' => 'bca', 'BcaB02g10453' => 'bca', 'BcaB05g22513' => 'bca', 'BcaB08g36253' => 'bca', 'BcaB08g36254' => 'bca', 'BcaC01g06519' => 'bca', 'BcaC02g11889' => 'bca', 'BcaC03g14010' => 'bca', 'BcaC03g18439' => 'bca', 'BcaC04g19765' => 'bca', 'BcaC09g48432' => 'bca', 'BcaNung07302' => 'bca', 'BolC2t06040H' => 'bol', 'BolC2t07346H' => 'bol', 'BolC3t13817H' => 'bol', 'BolC4t22625H' => 'bol', 'BolC4t23297H' => 'bol', 'BolC8t51278H' => 'bol', 'BolC9t58050H' => 'bol', 'BolC9t58051H' => 'bol', 'BolC9t60163H' => 'bol', 'BraA02t04712Z' => 'bra', 'BraA02t05791Z' => 'bra', 'BraA03t10483Z' => 'bra', 'BraA05t19795Z' => 'bra', 'BraA05t20276Z' => 'bra', 'BraA09t40827Z' => 'bra', 'BraA10t43750Z' => 'bra', 'BraA10t43751Z' => 'bra', 'BraA10t45370Z' => 'bra', 'C02p00400' => 'bna', 'C02p12460' => 'bna', 'C03p13680' => 'bna', 'C04p10270' => 'bna', 'C04p17500' => 'bna', 'C08p37010' => 'bna', 'C09p51880' => 'bna', 'C09p51890' => 'bna', 'C09p74300' => 'bna', 'CAN.G179.26' => 'can', 'CAN.G3384.1' => 'can', 'CAN.G394.68' => 'can', 'CAN.G907.13' => 'can', 'CANSAT11G0012' => 'cansat', 'CANSAT25G1586' => 'cansat', 'CANSAT35G0735' => 'cansat', 'CANSAT54G0556' => 'cansat', 'CANSAT64G0356' => 'cansat', 'CANSAT78G2042' => 'cansat', 'CARHR125920' => 'chi', 'CARHR131910' => 'chi', 'CARHR172390' => 'chi', 'CARHR211140' => 'chi', 'CARHR285850' => 'chi', 'CARHR285860' => 'chi', 'Carub.0004s1347' => 'cru', 'Carub.0004s1960' => 'cru', 'Carub.0005s2880' => 'cru', 'Carub.0006s0107' => 'cru', 'Carub.0008s2015' => 'cru', 'Carub.0008s2016' => 'cru', 'Carub.0008s2017' => 'cru', 'Ca_01315_v3' => 'car', 'Ca_05063_v3' => 'car', 'Ca_10231_v3' => 'car', 'Ca_10913_v3' => 'car', 'Ca_19156_v3' => 'car', 'Ca_23644_v3' => 'car', 'Ca_26735_v3' => 'car', 'Cc01_g13130' => 'ccan', 'Cc02_g21690' => 'ccan', 'Cc03_g03600' => 'ccan', 'Cc06_g02510' => 'ccan', 'CDE02G1265' => 'cde', 'CDE05G0415' => 'cde', 'CDE08G1082' => 'cde', 'Cfa005780' => 'cfa', 'Cfa011522' => 'cfa', 'Cfa011523' => 'cfa', 'Cfa015627' => 'cfa', 'Cfa017359' => 'cfa', 'Ciclev10005687m.g' => 'ccl', 'Ciclev10012173m.g' => 'ccl', 'Ciclev10021621m.g' => 'ccl', 'Ciclev10028968m.g' => 'ccl', 'Ciclev10029907m.g' => 'ccl', 'CiPaw.01G164800' => 'cil', 'CiPaw.07G083700' => 'cil', 'CiPaw.07G127000' => 'cil', 'CiPaw.07G136900' => 'cil', 'CiPaw.08G081700' => 'cil', 'CiPaw.09G194600' => 'cil', 'CiPaw.10G146500' => 'cil', 'CiPaw.13G091500' => 'cil', 'CiPaw.13G091600' => 'cil', 'ClCG00G003390' => 'cla', 'ClCG01G007220' => 'cla', 'ClCG03G001370' => 'cla', 'ClCG04G008100' => 'cla', 'ClCG06G006110' => 'cla', 'ClCG06G006130' => 'cla', 'ClCG10G021210' => 'cla', 'COL.COLO4_07648' => 'col', 'COL.COLO4_07650' => 'col', 'COL.COLO4_07651' => 'col', 'COL.COLO4_14780' => 'col', 'COL.COLO4_18546' => 'col', 'COL.COLO4_18547' => 'col', 'COL.COLO4_23103' => 'col', 'COL.COLO4_30419' => 'col', 'COL.COLO4_34232' => 'col', 'Cpa.g.sc169.20' => 'cpa', 'Cpa.g.sc57.45' => 'cpa', 'Cpa.g.sc58.124' => 'cpa', 'Cpa.g.sc58.125' => 'cpa', 'Cpa.g.sc81.118' => 'cpa', 'Cpa.g.sc81.119' => 'cpa', 'Cre12.g524700' => 'cre', 'CsaV3_1G034430' => 'csa', 'CsaV3_1G034440' => 'csa', 'CsaV3_1G034450' => 'csa', 'CsaV3_3G034830' => 'csa', 'CsaV3_4G025090' => 'csa', 'CsaV3_5G018660' => 'csa', 'CsaV3_6G038160' => 'csa', 'CSS0003447' => 'camsi', 'CSS0017840' => 'camsi', 'CSS0019260' => 'camsi', 'CSS0040375' => 'camsi', 'CSS0042533' => 'camsi', 'DCAR_005960' => 'dca', 'DCAR_012104' => 'dca', 'DCAR_012105' => 'dca', 'DCAR_012293' => 'dca', 'DCAR_015632' => 'dca', 'DCAR_024602' => 'dca', 'DCAR_028752' => 'dca', 'Dinv06261' => 'din', 'Dinv13982' => 'din', 'Dinv17029' => 'din', 'Dinv18463' => 'din', 'Dinv33181' => 'din', 'Dinv35585' => 'din', 'Dinv37161' => 'din', 'Dinv42977' => 'din', 'Dinv43122' => 'din', 'Dinv44517' => 'din', 'Duzib093G0256' => 'dzi', 'Duzib106G1254' => 'dzi', 'Duzib128G1789' => 'dzi', 'Duzib133G0633' => 'dzi', 'Duzib138G0510' => 'dzi', 'Duzib150G1084' => 'dzi', 'Duzib168G0488' => 'dzi', 'Duzib168G1523' => 'dzi', 'Duzib170G0133' => 'dzi', 'ECA234G1433' => 'eca', 'ECA236G1432' => 'eca', 'ECA236G2256' => 'eca', 'ECA236G2365' => 'eca', 'ECA236G4830' => 'eca', 'ECA248G1505' => 'eca', 'EL10Ac3g06431' => 'bvu', 'EL10Ac5g12577' => 'bvu', 'EL10Ac6g13533' => 'bvu', 'EL10Ac7g16045' => 'bvu', 'Eucgr.A01281' => 'egr', 'Eucgr.B02326' => 'egr', 'Eucgr.H03532' => 'egr', 'Eucgr.K00553' => 'egr', 'Eucgr.K03116' => 'egr', 'FAN02G3963' => 'fan', 'FAN05G0438' => 'fan', 'FAN09G2434' => 'fan', 'FAN12G3984' => 'fan', 'FAN14G0798' => 'fan', 'FAN17G0652' => 'fan', 'FAN19G1988' => 'fan', 'FAN22G0632' => 'fan', 'FAN23G0387' => 'fan', 'FAN26G1323' => 'fan', 'FAN28G0666' => 'fan', 'FvH4_1g26080' => 'fve', 'FvH4_3g36780' => 'fve', 'FvH4_4g15270' => 'fve', 'FvH4_6g13490' => 'fve', 'Glyma.01G098700' => 'gma', 'Glyma.03G065900' => 'gma', 'Glyma.03G073754' => 'gma', 'Glyma.03G073758' => 'gma', 'Glyma.03G083200' => 'gma', 'Glyma.03G225500' => 'gma', 'Glyma.05G037766' => 'gma', 'Glyma.07G133500' => 'gma', 'Glyma.10G139400' => 'gma', 'Glyma.10G248900' => 'gma', 'Glyma.11G137800' => 'gma', 'Glyma.12G061300' => 'gma', 'Glyma.13G337900' => 'gma', 'Glyma.15G036600' => 'gma', 'Glyma.18G182800' => 'gma', 'Glyma.19G222500' => 'gma', 'Glyma.20G144800' => 'gma', 'Gohir.A01G222000' => 'ghi', 'Gohir.A03G044000' => 'ghi', 'Gohir.A03G044100' => 'ghi', 'Gohir.A04G083100' => 'ghi', 'Gohir.A07G127200' => 'ghi', 'Gohir.A07G132400' => 'ghi', 'Gohir.A08G000700' => 'ghi', 'Gohir.A11G327300' => 'ghi', 'Gohir.D01G211500' => 'ghi', 'Gohir.D03G123400' => 'ghi', 'Gohir.D03G123500' => 'ghi', 'Gohir.D04G121800' => 'ghi', 'Gohir.D07G131500' => 'ghi', 'Gohir.D07G136600' => 'ghi', 'Gohir.D08G011600' => 'ghi', 'Gohir.D11G346200' => 'ghi', 'Gorai.001G142800' => 'gra', 'Gorai.001G148700' => 'gra', 'Gorai.002G257300' => 'gra', 'Gorai.003G130000' => 'gra', 'Gorai.003G130100' => 'gra', 'Gorai.004G005300' => 'gra', 'Gorai.007G376500' => 'gra', 'Gorai.012G104700' => 'gra', 'GSVIVG01017946001' => 'vvi', 'GSVIVG01024928001' => 'vvi', 'GSVIVG01028227001' => 'vvi', 'GSVIVG01034151001' => 'vvi', 'HanXRQChr05g0135031' => 'han', 'HanXRQChr05g0135041' => 'han', 'HanXRQChr05g0140021' => 'han', 'HanXRQChr06g0178981' => 'han', 'HanXRQChr07g0188251' => 'han', 'HanXRQChr08g0235311' => 'han', 'HanXRQChr09g0271011' => 'han', 'HanXRQChr10g0293321' => 'han', 'HanXRQChr13g0388171' => 'han', 'Haze_00916' => 'cav', 'Haze_05063' => 'cav', 'Haze_20814' => 'cav', 'Haze_24128' => 'cav', 'Hma1.2p1_0745F.1_g212010' => 'hma', 'Hma1.2p1_0757F.1_g213260' => 'hma', 'Hma1.2p1_0936F.1_g238840' => 'hma', 'Hma1.2p1_1735F.1_g299890' => 'hma', 'Hma1.2p1_1861F.1_g305685' => 'hma', 'HPP92_003397' => 'vpl', 'HPP92_012597' => 'vpl', 'HPP92_015520' => 'vpl', 'HPP92_015539' => 'vpl', 'HPP92_020373' => 'vpl', 'Hund04938' => 'sun', 'Hund10677' => 'sun', 'Hund11033' => 'sun', 'Hund12155' => 'sun', 'Lalb_Chr01g0022551' => 'lal', 'Lalb_Chr03g0042341' => 'lal', 'Lalb_Chr07g0192931' => 'lal', 'Lalb_Chr12g0209551' => 'lal', 'Lalb_Chr19g0125251' => 'lal', 'Lalb_Chr19g0137891' => 'lal', 'Lalb_Chr21g0304641' => 'lal', 'Lalb_Chr21g0309881' => 'lal', 'Lj1A5T12' => 'lonja', 'Lj1C148G10' => 'lonja', 'Lj2A93T83' => 'lonja', 'Lj3A738G68' => 'lonja', 'Lj3C966T1' => 'lonja', 'Lj3g0018958' => 'lja', 'Lj3g0021831' => 'lja', 'Lj3g0025443' => 'lja', 'Lj4g0026809' => 'lja', 'Lj5g0012558' => 'lja', 'Lj5g0021586' => 'lja', 'Lsat_1_v5_gn_5_156840' => 'lsa', 'Lsat_1_v5_gn_8_73460' => 'lsa', 'Lsat_1_v5_gn_8_73481' => 'lsa', 'Lsat_1_v5_gn_9_31601' => 'lsa', 'Lsat_1_v5_gn_9_77320' => 'lsa', 'Manes.01G171300' => 'mes', 'Manes.01G171400' => 'mes', 'Manes.01G236100' => 'mes', 'Manes.02G130500' => 'mes', 'Manes.02G130600' => 'mes', 'Manes.03G180200' => 'mes', 'Manes.05G007000' => 'mes', 'Manes.08G084400' => 'mes', 'Manes.09G092600' => 'mes', 'Manes.15G027900' => 'mes', 'MBI04_g40948_MAGBIO' => 'mbi', 'MBI14_g12123_MAGBIO' => 'mbi', 'MBI18_g28915_MAGBIO' => 'mbi', 'MCO09G053' => 'mco', 'MCO11G782' => 'mco', 'MCO15G215' => 'mco', 'MD03G1088500' => 'mdo', 'MD03G1088600' => 'mdo', 'MD04G1130800' => 'mdo', 'MD09G1291700' => 'mdo', 'MD11G1097500' => 'mdo', 'MD11G1097600' => 'mdo', 'MD12G1143900' => 'mdo', 'MD13G1191400' => 'mdo', 'MD16G1191500' => 'mdo', 'Medtr1g085570' => 'mtr', 'Medtr1g104610' => 'mtr', 'Medtr2g097520' => 'mtr', 'Medtr4g021800' => 'mtr', 'Medtr4g021825' => 'mtr', 'Medtr4g064270' => 'mtr', 'Medtr4g064380' => 'mtr', 'Medtr7g062150' => 'mtr', 'MELO3C003138.2' => 'cme', 'MELO3C005187.2' => 'cme', 'MELO3C009252.2' => 'cme', 'MELO3C014481.2' => 'cme', 'MELO3C020616.2' => 'cme', 'MELO3C020617.2' => 'cme', 'MELO3C020618.2' => 'cme', 'Migut.G00328' => 'egut', 'Migut.J00320' => 'egut', 'Migut.L01000' => 'egut', 'Migut.L01953' => 'egut', 'MSTRG.10253' => 'ama', 'MSTRG.19077' => 'ama', 'MSTRG.26780' => 'ama', 'MSTRG.4023' => 'ama', 'MSTRG.5655' => 'ama', 'MSTRG.9992' => 'ama', 'Nitab4.5_0000043g0310' => 'nta', 'Nitab4.5_0000463g0080' => 'nta', 'Nitab4.5_0000705g0170' => 'nta', 'Nitab4.5_0001326g0060' => 'nta', 'Nitab4.5_0001628g0030' => 'nta', 'Nitab4.5_0002103g0110' => 'nta', 'Nitab4.5_0002946g0030' => 'nta', 'Nitab4.5_0004639g0030' => 'nta', 'Nn2g11149' => 'nnu', 'Nn2g13389' => 'nnu', 'Nn4g25326' => 'nnu', 'Nn4g26290' => 'nnu', 'Nn5g29865' => 'nnu', 'Oeu004163.1' => 'oeu', 'Oeu006901.1' => 'oeu', 'Oeu010096.1' => 'oeu', 'Oeu024340.1' => 'oeu', 'Oeu048369.1' => 'oeu', 'Os01g0973000' => 'osa', 'Os03g0273800' => 'osa', 'Os03g0701200' => 'osa', 'Os03g0834050' => 'osa', 'Os07g0634400' => 'osa', 'Peaxi162Scf00092g01414' => 'pax', 'Peaxi162Scf00165g00818' => 'pax', 'Peaxi162Scf00309g00516' => 'pax', 'Peaxi162Scf00774g00218' => 'pax', 'PGR004G1824' => 'pgr', 'PGR004G2606' => 'pgr', 'PGR031G2716' => 'pgr', 'PGR102G2460' => 'pgr', 'PGR142G2599' => 'pgr', 'PGSC0003DMG400000843' => 'stu', 'PGSC0003DMG400008829' => 'stu', 'PGSC0003DMG400030418' => 'stu', 'PGSC0003DMG400031834' => 'stu', 'PGSC0003DMG401028300' => 'stu', 'PGSC0003DMG402028300' => 'stu', 'Phvul.001G219300' => 'pvu', 'Phvul.007G056000' => 'pvu', 'Phvul.007G208000' => 'pvu', 'Phvul.008G119500' => 'pvu', 'Phvul.010G011200' => 'pvu', 'Phvul.010G014800' => 'pvu', 'Phvul.011G062900' => 'pvu', 'Phvul.L007043' => 'pvu', 'Potri.001G242300' => 'ptr', 'Potri.002G185300' => 'ptr', 'Potri.006G086900' => 'ptr', 'Potri.008G151700' => 'ptr', 'Potri.009G033500' => 'ptr', 'Potri.010G089300' => 'ptr', 'Potri.014G110800' => 'ptr', 'Pp3c27_8130' => 'ppa', 'Pp3c6_27410' => 'ppa', 'PRCOL_00001659' => 'pco', 'PRCOL_00001927' => 'pco', 'PRCOL_00003649' => 'pco', 'Prupe.1G011600' => 'ppe', 'Prupe.3G000800' => 'ppe', 'Prupe.3G001100' => 'ppe', 'Prupe.6G072700' => 'ppe', 'Prupe.6G072800' => 'ppe', 'Prupe.6G257300' => 'ppe', 'Prupe.8G033000' => 'ppe', 'Psat0s2633g0080' => 'psa', 'Psat0s3396g0080' => 'psa', 'Psat0s3396g0200' => 'psa', 'Psat3g139080' => 'psa', 'Psat5g285080' => 'psa', 'Psat6g157760' => 'psa', 'Psat6g208440' => 'psa', 'Psat7g215320' => 'psa', 'Psat7g215400' => 'psa', 'Psat7g235600' => 'psa', 'Psat7g235760' => 'psa', 'PSO063G4603' => 'pso', 'PSO210G0182' => 'pso', 'PSO210G0196' => 'pso', 'PSO339G0394' => 'pso', 'PSO339G4127' => 'pso', 'PSO513G0064' => 'pso', 'PSO761G0079' => 'pso', 'QL01p031003' => 'qlo', 'QL01p031078' => 'qlo', 'QL06p003004' => 'qlo', 'QL07p048731' => 'qlo', 'QL09p037427' => 'qlo', 'RcHm_v2.0_Chr3g0466361' => 'rch', 'RcHm_v2.0_Chr3g0485571' => 'rch', 'RcHm_v2.0_Chr4g0416551' => 'rch', 'RcHm_v2.0_Chr5g0065831' => 'rch', 'Rhsim01G0230500' => 'rsi', 'Rhsim05G0194000' => 'rsi', 'Rhsim08G0250400' => 'rsi', 'Sabra02G0131000' => 'sbr', 'Sabra06G0066300' => 'sbr', 'Sabra08G0115500' => 'sbr', 'Sabra09G0023900' => 'sbr', 'Sabra10G0054000' => 'sbr', 'Sabra14G0081500' => 'sbr', 'Sabra16G0147100' => 'sbr', 'SalBow2G2957' => 'sbo', 'SalBow4G3320' => 'sbo', 'SalBow8G1894' => 'sbo', 'Sc07g0007950' => 'sci', 'Sc12g0001360' => 'sci', 'Sc13g0004330' => 'sci', 'Sc20g0005010' => 'sci', 'Sed0000361' => 'sed', 'Sed0001706' => 'sed', 'Sed0002422' => 'sed', 'Sed0004029' => 'sed', 'Sed0004602' => 'sed', 'Sed0004943' => 'sed', 'Sed0008646' => 'sed', 'Sed0023313' => 'sed', 'Sed0024843' => 'sed', 'SEGI_00081' => 'sgi', 'SEGI_00947' => 'sgi', 'SEGI_04046' => 'sgi', 'SEGI_06880' => 'sgi', 'SEGI_09736' => 'sgi', 'SEGI_12741' => 'sgi', 'SEGI_14530' => 'sgi', 'SEGI_20705' => 'sgi', 'SEGI_26088' => 'sgi', 'SEGI_28323' => 'sgi', 'SEGI_33343' => 'sgi', 'SGA_v2.0_scaffold126G33775' => 'sas', 'SGA_v2.0_scaffold2G01337' => 'sas', 'SGA_v2.0_scaffold38G15006' => 'sas', 'SGA_v2.0_scaffold39G15264' => 'sas', 'SGA_v2.0_scaffold453G51880' => 'sas', 'SHI12696' => 'shi', 'SMO367G1096' => 'smo', 'Solyc01g068630.3' => 'sly', 'Solyc05g011880.3' => 'sly', 'Solyc06g076300.3' => 'sly', 'Solyc09g010940.4' => 'sly', 'Solyc09g075890.3' => 'sly', 'Sopen01g030560' => 'spe', 'Sopen05g006630' => 'spe', 'Sopen06g032720' => 'spe', 'Sopen09g005660' => 'spe', 'Sopen09g030690' => 'spe', 'Sp4g14540' => 'spa', 'Sp4g20030' => 'spa', 'Sp5g01320' => 'spa', 'Sp6g21170' => 'spa', 'Sp6g21180' => 'spa', 'Sp6g21190' => 'spa', 'Sp6g40220' => 'spa', 'TAR362G0122' => 'tar', 'TAR362G1338' => 'tar', 'TAR369G0590' => 'tar', 'TAR371G0824' => 'tar', 'TAR622G1429' => 'tar', 'TAR623G0734' => 'tar', 'TAR625G0441' => 'tar', 'TAR629G0976' => 'tar', 'TAR633G1195' => 'tar', 'TAR636G2660' => 'tar', 'THA.LOC104799440' => 'tha', 'THA.LOC104800966' => 'tha', 'THA.LOC104806559' => 'tha', 'THA.LOC104810765' => 'tha', 'THA.LOC104816266' => 'tha', 'THA.LOC104817419' => 'tha', 'THA.LOC104827021' => 'tha', 'Thecc.01G327400' => 'tca', 'Thecc.04G229200' => 'tca', 'Thecc.05G037400' => 'tca', 'Thecc.09G318600' => 'tca', 'Thecc.09G318700' => 'tca', 'Thhalv10006238m.g' => 'esa', 'Thhalv10014321m.g' => 'esa', 'Thhalv10014335m.g' => 'esa', 'Thhalv10015826m.g' => 'esa', 'Thhalv10017107m.g' => 'esa', 'Thhalv10017180m.g' => 'esa', 'Thhalv10029339m.g' => 'esa', 'TPR.G1699' => 'tpr', 'TPR.G23609' => 'tpr', 'TPR.G3081' => 'tpr', 'TPR.G40397' => 'tpr', 'TPR.G5522' => 'tpr', 'TPR.G5618' => 'tpr', 'TPR.G5626' => 'tpr', 'TWI09G1632' => 'twi', 'TWI23G1230' => 'twi', 'TWI53G1064' => 'twi', 'TWI59G0751' => 'twi', 'TWI74G0947' => 'twi', 'TWI77G0337' => 'twi', 'TWI79G1254' => 'twi', 'unitig_0.g2341' => 'ugi', 'unitig_26.g10006' => 'ugi', 'unitig_26.g10008' => 'ugi', 'unitig_26.g9192' => 'ugi', 'vmacro14547' => 'vma', 'vmacro15333' => 'vma', 'vmacro18743' => 'vma', 'vmacro20166' => 'vma', 'VMungo0331G0523' => 'vmu', 'VMungo0331G1202' => 'vmu', 'VMungo0720G1228' => 'vmu', 'VMungo0720G1514' => 'vmu', 'VMungo1080G0169' => 'vmu', 'VMungo1127G1475' => 'vmu', 'VMungo1383G1208' => 'vmu', 'VMungo1383G1698' => 'vmu', 'Zm00001eb012270' => 'zma', 'Zm00001eb054100' => 'zma', 'Zm00001eb063350' => 'zma', 'Zm00001eb328560' => 'zma', 'Zm00001eb342820' => 'zma', 'Zm00001eb362210' => 'zma', 'Zm00001eb397730' => 'zma', 'Zm00001eb399750' => 'zma' ) $gf_id = 'HOM05D000959' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000959' ) $data_identifier = 'HOM05D000959' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 5, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 5, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 10, 'mbi' => (int) 3, 'mco' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 2, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 3, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 11, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399750' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000959', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '622', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p07100' => 'bna', 'A03p11720' => 'bna', 'A05p08300' => 'bna', 'A05p13380' => 'bna', 'A09p54130' => 'bna', 'A10p16690' => 'bna', 'A10p16700' => 'bna', 'A10p33390' => 'bna', 'Aa31LG10G16020' => 'aar', 'Aa31LG1G11810' => 'aar', 'Aa31LG1G11830' => 'aar', 'Aa31LG1G22510' => 'aar', 'Aa31LG5G4890' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5793' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2310' => 'aag', 'Actinidia08499' => 'ach', 'Actinidia11262' => 'ach', 'Actinidia23926' => 'ach', 'Actinidia34420' => 'ach', 'Actinidia36970' => 'ach', 'Ah.02g111220' => 'amhyb', 'Ah.15g097750' => 'amhyb', 'AL4G27500' => 'aly', 'AL6G11470' => 'aly', 'AL8G35950' => 'aly', 'AL8G35960' => 'aly', 'AL8G35970' => 'aly', 'Aqoxy1G00912' => 'aox', 'Aqoxy2G02253' => 'aox', 'Aqoxy2G02411' => 'aox', 'Aqoxy5G00485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BZ66YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K8ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM4FUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6BF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HFV7XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25JBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0YNNV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MAKK6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P70IT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP2Z6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V61LZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YWP64R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3S9AI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7PGHH' => 'arhy', 'AT2G32150' => 'ath', 'AT3G62040' => 'ath', 'AT5G02230' => 'ath', 'AT5G59480' => 'ath', 'AT5G59490' => 'ath', 'ATR0332G060' => 'atr', 'ATR0559G190' => 'atr', 'ATR0693G294' => 'atr', 'Atru.chr3.3975' => 'acertr', 'Atru.chr3.3976' => 'acertr', 'Atru.chr3.3977' => 'acertr', 'Atru.chr4.2498' => 'acertr', 'Atru.chr5.838' => 'acertr', 'Atru.chr8.1990' => 'acertr', 'Atru.chr8.1991' => 'acertr', 'Atru.chr8.1992' => 'acertr', 'AUR62001759' => 'cqu', 'AUR62009545' => 'cqu', 'AUR62010474' => 'cqu', 'AUR62025820' => 'cqu', 'AUR62030422' => 'cqu', 'AUR62033605' => 'cqu', 'AUR62038615' => 'cqu', 'AUR62041347' => 'cqu', 'BcaB01g04574' => 'bca', 'BcaB02g09263' => 'bca', 'BcaB02g10453' => 'bca', 'BcaB05g22513' => 'bca', 'BcaB08g36253' => 'bca', 'BcaB08g36254' => 'bca', 'BcaC01g06519' => 'bca', 'BcaC02g11889' => 'bca', 'BcaC03g14010' => 'bca', 'BcaC03g18439' => 'bca', 'BcaC04g19765' => 'bca', 'BcaC09g48432' => 'bca', 'BcaNung07302' => 'bca', 'BolC2t06040H' => 'bol', 'BolC2t07346H' => 'bol', 'BolC3t13817H' => 'bol', 'BolC4t22625H' => 'bol', 'BolC4t23297H' => 'bol', 'BolC8t51278H' => 'bol', 'BolC9t58050H' => 'bol', 'BolC9t58051H' => 'bol', 'BolC9t60163H' => 'bol', 'BraA02t04712Z' => 'bra', 'BraA02t05791Z' => 'bra', 'BraA03t10483Z' => 'bra', 'BraA05t19795Z' => 'bra', 'BraA05t20276Z' => 'bra', 'BraA09t40827Z' => 'bra', 'BraA10t43750Z' => 'bra', 'BraA10t43751Z' => 'bra', 'BraA10t45370Z' => 'bra', 'C02p00400' => 'bna', 'C02p12460' => 'bna', 'C03p13680' => 'bna', 'C04p10270' => 'bna', 'C04p17500' => 'bna', 'C08p37010' => 'bna', 'C09p51880' => 'bna', 'C09p51890' => 'bna', 'C09p74300' => 'bna', 'CAN.G179.26' => 'can', 'CAN.G3384.1' => 'can', 'CAN.G394.68' => 'can', 'CAN.G907.13' => 'can', 'CANSAT11G0012' => 'cansat', 'CANSAT25G1586' => 'cansat', 'CANSAT35G0735' => 'cansat', 'CANSAT54G0556' => 'cansat', 'CANSAT64G0356' => 'cansat', 'CANSAT78G2042' => 'cansat', 'CARHR125920' => 'chi', 'CARHR131910' => 'chi', 'CARHR172390' => 'chi', 'CARHR211140' => 'chi', 'CARHR285850' => 'chi', 'CARHR285860' => 'chi', 'Carub.0004s1347' => 'cru', 'Carub.0004s1960' => 'cru', 'Carub.0005s2880' => 'cru', 'Carub.0006s0107' => 'cru', 'Carub.0008s2015' => 'cru', 'Carub.0008s2016' => 'cru', 'Carub.0008s2017' => 'cru', 'Ca_01315_v3' => 'car', 'Ca_05063_v3' => 'car', 'Ca_10231_v3' => 'car', 'Ca_10913_v3' => 'car', 'Ca_19156_v3' => 'car', 'Ca_23644_v3' => 'car', 'Ca_26735_v3' => 'car', 'Cc01_g13130' => 'ccan', 'Cc02_g21690' => 'ccan', 'Cc03_g03600' => 'ccan', 'Cc06_g02510' => 'ccan', 'CDE02G1265' => 'cde', 'CDE05G0415' => 'cde', 'CDE08G1082' => 'cde', 'Cfa005780' => 'cfa', 'Cfa011522' => 'cfa', 'Cfa011523' => 'cfa', 'Cfa015627' => 'cfa', 'Cfa017359' => 'cfa', 'Ciclev10005687m.g' => 'ccl', 'Ciclev10012173m.g' => 'ccl', 'Ciclev10021621m.g' => 'ccl', 'Ciclev10028968m.g' => 'ccl', 'Ciclev10029907m.g' => 'ccl', 'CiPaw.01G164800' => 'cil', 'CiPaw.07G083700' => 'cil', 'CiPaw.07G127000' => 'cil', 'CiPaw.07G136900' => 'cil', 'CiPaw.08G081700' => 'cil', 'CiPaw.09G194600' => 'cil', 'CiPaw.10G146500' => 'cil', 'CiPaw.13G091500' => 'cil', 'CiPaw.13G091600' => 'cil', 'ClCG00G003390' => 'cla', 'ClCG01G007220' => 'cla', 'ClCG03G001370' => 'cla', 'ClCG04G008100' => 'cla', 'ClCG06G006110' => 'cla', 'ClCG06G006130' => 'cla', 'ClCG10G021210' => 'cla', 'COL.COLO4_07648' => 'col', 'COL.COLO4_07650' => 'col', 'COL.COLO4_07651' => 'col', 'COL.COLO4_14780' => 'col', 'COL.COLO4_18546' => 'col', 'COL.COLO4_18547' => 'col', 'COL.COLO4_23103' => 'col', 'COL.COLO4_30419' => 'col', 'COL.COLO4_34232' => 'col', 'Cpa.g.sc169.20' => 'cpa', 'Cpa.g.sc57.45' => 'cpa', 'Cpa.g.sc58.124' => 'cpa', 'Cpa.g.sc58.125' => 'cpa', 'Cpa.g.sc81.118' => 'cpa', 'Cpa.g.sc81.119' => 'cpa', 'Cre12.g524700' => 'cre', 'CsaV3_1G034430' => 'csa', 'CsaV3_1G034440' => 'csa', 'CsaV3_1G034450' => 'csa', 'CsaV3_3G034830' => 'csa', 'CsaV3_4G025090' => 'csa', 'CsaV3_5G018660' => 'csa', 'CsaV3_6G038160' => 'csa', 'CSS0003447' => 'camsi', 'CSS0017840' => 'camsi', 'CSS0019260' => 'camsi', 'CSS0040375' => 'camsi', 'CSS0042533' => 'camsi', 'DCAR_005960' => 'dca', 'DCAR_012104' => 'dca', 'DCAR_012105' => 'dca', 'DCAR_012293' => 'dca', 'DCAR_015632' => 'dca', 'DCAR_024602' => 'dca', 'DCAR_028752' => 'dca', 'Dinv06261' => 'din', 'Dinv13982' => 'din', 'Dinv17029' => 'din', 'Dinv18463' => 'din', 'Dinv33181' => 'din', 'Dinv35585' => 'din', 'Dinv37161' => 'din', 'Dinv42977' => 'din', 'Dinv43122' => 'din', 'Dinv44517' => 'din', 'Duzib093G0256' => 'dzi', 'Duzib106G1254' => 'dzi', 'Duzib128G1789' => 'dzi', 'Duzib133G0633' => 'dzi', 'Duzib138G0510' => 'dzi', 'Duzib150G1084' => 'dzi', 'Duzib168G0488' => 'dzi', 'Duzib168G1523' => 'dzi', 'Duzib170G0133' => 'dzi', 'ECA234G1433' => 'eca', 'ECA236G1432' => 'eca', 'ECA236G2256' => 'eca', 'ECA236G2365' => 'eca', 'ECA236G4830' => 'eca', 'ECA248G1505' => 'eca', 'EL10Ac3g06431' => 'bvu', 'EL10Ac5g12577' => 'bvu', 'EL10Ac6g13533' => 'bvu', 'EL10Ac7g16045' => 'bvu', 'Eucgr.A01281' => 'egr', 'Eucgr.B02326' => 'egr', 'Eucgr.H03532' => 'egr', 'Eucgr.K00553' => 'egr', 'Eucgr.K03116' => 'egr', 'FAN02G3963' => 'fan', 'FAN05G0438' => 'fan', 'FAN09G2434' => 'fan', 'FAN12G3984' => 'fan', 'FAN14G0798' => 'fan', 'FAN17G0652' => 'fan', 'FAN19G1988' => 'fan', 'FAN22G0632' => 'fan', 'FAN23G0387' => 'fan', 'FAN26G1323' => 'fan', 'FAN28G0666' => 'fan', 'FvH4_1g26080' => 'fve', 'FvH4_3g36780' => 'fve', 'FvH4_4g15270' => 'fve', 'FvH4_6g13490' => 'fve', 'Glyma.01G098700' => 'gma', 'Glyma.03G065900' => 'gma', 'Glyma.03G073754' => 'gma', 'Glyma.03G073758' => 'gma', 'Glyma.03G083200' => 'gma', 'Glyma.03G225500' => 'gma', 'Glyma.05G037766' => 'gma', 'Glyma.07G133500' => 'gma', 'Glyma.10G139400' => 'gma', 'Glyma.10G248900' => 'gma', 'Glyma.11G137800' => 'gma', 'Glyma.12G061300' => 'gma', 'Glyma.13G337900' => 'gma', 'Glyma.15G036600' => 'gma', 'Glyma.18G182800' => 'gma', 'Glyma.19G222500' => 'gma', 'Glyma.20G144800' => 'gma', 'Gohir.A01G222000' => 'ghi', 'Gohir.A03G044000' => 'ghi', 'Gohir.A03G044100' => 'ghi', 'Gohir.A04G083100' => 'ghi', 'Gohir.A07G127200' => 'ghi', 'Gohir.A07G132400' => 'ghi', 'Gohir.A08G000700' => 'ghi', 'Gohir.A11G327300' => 'ghi', 'Gohir.D01G211500' => 'ghi', 'Gohir.D03G123400' => 'ghi', 'Gohir.D03G123500' => 'ghi', 'Gohir.D04G121800' => 'ghi', 'Gohir.D07G131500' => 'ghi', 'Gohir.D07G136600' => 'ghi', 'Gohir.D08G011600' => 'ghi', 'Gohir.D11G346200' => 'ghi', 'Gorai.001G142800' => 'gra', 'Gorai.001G148700' => 'gra', 'Gorai.002G257300' => 'gra', 'Gorai.003G130000' => 'gra', 'Gorai.003G130100' => 'gra', 'Gorai.004G005300' => 'gra', 'Gorai.007G376500' => 'gra', 'Gorai.012G104700' => 'gra', 'GSVIVG01017946001' => 'vvi', 'GSVIVG01024928001' => 'vvi', 'GSVIVG01028227001' => 'vvi', 'GSVIVG01034151001' => 'vvi', 'HanXRQChr05g0135031' => 'han', 'HanXRQChr05g0135041' => 'han', 'HanXRQChr05g0140021' => 'han', 'HanXRQChr06g0178981' => 'han', 'HanXRQChr07g0188251' => 'han', 'HanXRQChr08g0235311' => 'han', 'HanXRQChr09g0271011' => 'han', 'HanXRQChr10g0293321' => 'han', 'HanXRQChr13g0388171' => 'han', 'Haze_00916' => 'cav', 'Haze_05063' => 'cav', 'Haze_20814' => 'cav', 'Haze_24128' => 'cav', 'Hma1.2p1_0745F.1_g212010' => 'hma', 'Hma1.2p1_0757F.1_g213260' => 'hma', 'Hma1.2p1_0936F.1_g238840' => 'hma', 'Hma1.2p1_1735F.1_g299890' => 'hma', 'Hma1.2p1_1861F.1_g305685' => 'hma', 'HPP92_003397' => 'vpl', 'HPP92_012597' => 'vpl', 'HPP92_015520' => 'vpl', 'HPP92_015539' => 'vpl', 'HPP92_020373' => 'vpl', 'Hund04938' => 'sun', 'Hund10677' => 'sun', 'Hund11033' => 'sun', 'Hund12155' => 'sun', 'Lalb_Chr01g0022551' => 'lal', 'Lalb_Chr03g0042341' => 'lal', 'Lalb_Chr07g0192931' => 'lal', 'Lalb_Chr12g0209551' => 'lal', 'Lalb_Chr19g0125251' => 'lal', 'Lalb_Chr19g0137891' => 'lal', 'Lalb_Chr21g0304641' => 'lal', 'Lalb_Chr21g0309881' => 'lal', 'Lj1A5T12' => 'lonja', 'Lj1C148G10' => 'lonja', 'Lj2A93T83' => 'lonja', 'Lj3A738G68' => 'lonja', 'Lj3C966T1' => 'lonja', 'Lj3g0018958' => 'lja', 'Lj3g0021831' => 'lja', 'Lj3g0025443' => 'lja', 'Lj4g0026809' => 'lja', 'Lj5g0012558' => 'lja', 'Lj5g0021586' => 'lja', 'Lsat_1_v5_gn_5_156840' => 'lsa', 'Lsat_1_v5_gn_8_73460' => 'lsa', 'Lsat_1_v5_gn_8_73481' => 'lsa', 'Lsat_1_v5_gn_9_31601' => 'lsa', 'Lsat_1_v5_gn_9_77320' => 'lsa', 'Manes.01G171300' => 'mes', 'Manes.01G171400' => 'mes', 'Manes.01G236100' => 'mes', 'Manes.02G130500' => 'mes', 'Manes.02G130600' => 'mes', 'Manes.03G180200' => 'mes', 'Manes.05G007000' => 'mes', 'Manes.08G084400' => 'mes', 'Manes.09G092600' => 'mes', 'Manes.15G027900' => 'mes', 'MBI04_g40948_MAGBIO' => 'mbi', 'MBI14_g12123_MAGBIO' => 'mbi', 'MBI18_g28915_MAGBIO' => 'mbi', 'MCO09G053' => 'mco', 'MCO11G782' => 'mco', 'MCO15G215' => 'mco', 'MD03G1088500' => 'mdo', 'MD03G1088600' => 'mdo', 'MD04G1130800' => 'mdo', 'MD09G1291700' => 'mdo', 'MD11G1097500' => 'mdo', 'MD11G1097600' => 'mdo', 'MD12G1143900' => 'mdo', 'MD13G1191400' => 'mdo', 'MD16G1191500' => 'mdo', 'Medtr1g085570' => 'mtr', 'Medtr1g104610' => 'mtr', 'Medtr2g097520' => 'mtr', 'Medtr4g021800' => 'mtr', 'Medtr4g021825' => 'mtr', 'Medtr4g064270' => 'mtr', 'Medtr4g064380' => 'mtr', 'Medtr7g062150' => 'mtr', 'MELO3C003138.2' => 'cme', 'MELO3C005187.2' => 'cme', 'MELO3C009252.2' => 'cme', 'MELO3C014481.2' => 'cme', 'MELO3C020616.2' => 'cme', 'MELO3C020617.2' => 'cme', 'MELO3C020618.2' => 'cme', 'Migut.G00328' => 'egut', 'Migut.J00320' => 'egut', 'Migut.L01000' => 'egut', 'Migut.L01953' => 'egut', 'MSTRG.10253' => 'ama', 'MSTRG.19077' => 'ama', 'MSTRG.26780' => 'ama', 'MSTRG.4023' => 'ama', 'MSTRG.5655' => 'ama', 'MSTRG.9992' => 'ama', 'Nitab4.5_0000043g0310' => 'nta', 'Nitab4.5_0000463g0080' => 'nta', 'Nitab4.5_0000705g0170' => 'nta', 'Nitab4.5_0001326g0060' => 'nta', 'Nitab4.5_0001628g0030' => 'nta', 'Nitab4.5_0002103g0110' => 'nta', 'Nitab4.5_0002946g0030' => 'nta', 'Nitab4.5_0004639g0030' => 'nta', 'Nn2g11149' => 'nnu', 'Nn2g13389' => 'nnu', 'Nn4g25326' => 'nnu', 'Nn4g26290' => 'nnu', 'Nn5g29865' => 'nnu', 'Oeu004163.1' => 'oeu', 'Oeu006901.1' => 'oeu', 'Oeu010096.1' => 'oeu', 'Oeu024340.1' => 'oeu', 'Oeu048369.1' => 'oeu', 'Os01g0973000' => 'osa', 'Os03g0273800' => 'osa', 'Os03g0701200' => 'osa', 'Os03g0834050' => 'osa', 'Os07g0634400' => 'osa', 'Peaxi162Scf00092g01414' => 'pax', 'Peaxi162Scf00165g00818' => 'pax', 'Peaxi162Scf00309g00516' => 'pax', 'Peaxi162Scf00774g00218' => 'pax', 'PGR004G1824' => 'pgr', 'PGR004G2606' => 'pgr', 'PGR031G2716' => 'pgr', 'PGR102G2460' => 'pgr', 'PGR142G2599' => 'pgr', 'PGSC0003DMG400000843' => 'stu', 'PGSC0003DMG400008829' => 'stu', 'PGSC0003DMG400030418' => 'stu', 'PGSC0003DMG400031834' => 'stu', 'PGSC0003DMG401028300' => 'stu', 'PGSC0003DMG402028300' => 'stu', 'Phvul.001G219300' => 'pvu', 'Phvul.007G056000' => 'pvu', 'Phvul.007G208000' => 'pvu', 'Phvul.008G119500' => 'pvu', 'Phvul.010G011200' => 'pvu', 'Phvul.010G014800' => 'pvu', 'Phvul.011G062900' => 'pvu', 'Phvul.L007043' => 'pvu', 'Potri.001G242300' => 'ptr', 'Potri.002G185300' => 'ptr', 'Potri.006G086900' => 'ptr', 'Potri.008G151700' => 'ptr', 'Potri.009G033500' => 'ptr', 'Potri.010G089300' => 'ptr', 'Potri.014G110800' => 'ptr', 'Pp3c27_8130' => 'ppa', 'Pp3c6_27410' => 'ppa', 'PRCOL_00001659' => 'pco', 'PRCOL_00001927' => 'pco', 'PRCOL_00003649' => 'pco', 'Prupe.1G011600' => 'ppe', 'Prupe.3G000800' => 'ppe', 'Prupe.3G001100' => 'ppe', 'Prupe.6G072700' => 'ppe', 'Prupe.6G072800' => 'ppe', 'Prupe.6G257300' => 'ppe', 'Prupe.8G033000' => 'ppe', 'Psat0s2633g0080' => 'psa', 'Psat0s3396g0080' => 'psa', 'Psat0s3396g0200' => 'psa', 'Psat3g139080' => 'psa', 'Psat5g285080' => 'psa', 'Psat6g157760' => 'psa', 'Psat6g208440' => 'psa', 'Psat7g215320' => 'psa', 'Psat7g215400' => 'psa', 'Psat7g235600' => 'psa', 'Psat7g235760' => 'psa', 'PSO063G4603' => 'pso', 'PSO210G0182' => 'pso', 'PSO210G0196' => 'pso', 'PSO339G0394' => 'pso', 'PSO339G4127' => 'pso', 'PSO513G0064' => 'pso', 'PSO761G0079' => 'pso', 'QL01p031003' => 'qlo', 'QL01p031078' => 'qlo', 'QL06p003004' => 'qlo', 'QL07p048731' => 'qlo', 'QL09p037427' => 'qlo', 'RcHm_v2.0_Chr3g0466361' => 'rch', 'RcHm_v2.0_Chr3g0485571' => 'rch', 'RcHm_v2.0_Chr4g0416551' => 'rch', 'RcHm_v2.0_Chr5g0065831' => 'rch', 'Rhsim01G0230500' => 'rsi', 'Rhsim05G0194000' => 'rsi', 'Rhsim08G0250400' => 'rsi', 'Sabra02G0131000' => 'sbr', 'Sabra06G0066300' => 'sbr', 'Sabra08G0115500' => 'sbr', 'Sabra09G0023900' => 'sbr', 'Sabra10G0054000' => 'sbr', 'Sabra14G0081500' => 'sbr', 'Sabra16G0147100' => 'sbr', 'SalBow2G2957' => 'sbo', 'SalBow4G3320' => 'sbo', 'SalBow8G1894' => 'sbo', 'Sc07g0007950' => 'sci', 'Sc12g0001360' => 'sci', 'Sc13g0004330' => 'sci', 'Sc20g0005010' => 'sci', 'Sed0000361' => 'sed', 'Sed0001706' => 'sed', 'Sed0002422' => 'sed', 'Sed0004029' => 'sed', 'Sed0004602' => 'sed', 'Sed0004943' => 'sed', 'Sed0008646' => 'sed', 'Sed0023313' => 'sed', 'Sed0024843' => 'sed', 'SEGI_00081' => 'sgi', 'SEGI_00947' => 'sgi', 'SEGI_04046' => 'sgi', 'SEGI_06880' => 'sgi', 'SEGI_09736' => 'sgi', 'SEGI_12741' => 'sgi', 'SEGI_14530' => 'sgi', 'SEGI_20705' => 'sgi', 'SEGI_26088' => 'sgi', 'SEGI_28323' => 'sgi', 'SEGI_33343' => 'sgi', 'SGA_v2.0_scaffold126G33775' => 'sas', 'SGA_v2.0_scaffold2G01337' => 'sas', 'SGA_v2.0_scaffold38G15006' => 'sas', 'SGA_v2.0_scaffold39G15264' => 'sas', 'SGA_v2.0_scaffold453G51880' => 'sas', 'SHI12696' => 'shi', 'SMO367G1096' => 'smo', 'Solyc01g068630.3' => 'sly', 'Solyc05g011880.3' => 'sly', 'Solyc06g076300.3' => 'sly', 'Solyc09g010940.4' => 'sly', 'Solyc09g075890.3' => 'sly', 'Sopen01g030560' => 'spe', 'Sopen05g006630' => 'spe', 'Sopen06g032720' => 'spe', 'Sopen09g005660' => 'spe', 'Sopen09g030690' => 'spe', 'Sp4g14540' => 'spa', 'Sp4g20030' => 'spa', 'Sp5g01320' => 'spa', 'Sp6g21170' => 'spa', 'Sp6g21180' => 'spa', 'Sp6g21190' => 'spa', 'Sp6g40220' => 'spa', 'TAR362G0122' => 'tar', 'TAR362G1338' => 'tar', 'TAR369G0590' => 'tar', 'TAR371G0824' => 'tar', 'TAR622G1429' => 'tar', 'TAR623G0734' => 'tar', 'TAR625G0441' => 'tar', 'TAR629G0976' => 'tar', 'TAR633G1195' => 'tar', 'TAR636G2660' => 'tar', 'THA.LOC104799440' => 'tha', 'THA.LOC104800966' => 'tha', 'THA.LOC104806559' => 'tha', 'THA.LOC104810765' => 'tha', 'THA.LOC104816266' => 'tha', 'THA.LOC104817419' => 'tha', 'THA.LOC104827021' => 'tha', 'Thecc.01G327400' => 'tca', 'Thecc.04G229200' => 'tca', 'Thecc.05G037400' => 'tca', 'Thecc.09G318600' => 'tca', 'Thecc.09G318700' => 'tca', 'Thhalv10006238m.g' => 'esa', 'Thhalv10014321m.g' => 'esa', 'Thhalv10014335m.g' => 'esa', 'Thhalv10015826m.g' => 'esa', 'Thhalv10017107m.g' => 'esa', 'Thhalv10017180m.g' => 'esa', 'Thhalv10029339m.g' => 'esa', 'TPR.G1699' => 'tpr', 'TPR.G23609' => 'tpr', 'TPR.G3081' => 'tpr', 'TPR.G40397' => 'tpr', 'TPR.G5522' => 'tpr', 'TPR.G5618' => 'tpr', 'TPR.G5626' => 'tpr', 'TWI09G1632' => 'twi', 'TWI23G1230' => 'twi', 'TWI53G1064' => 'twi', 'TWI59G0751' => 'twi', 'TWI74G0947' => 'twi', 'TWI77G0337' => 'twi', 'TWI79G1254' => 'twi', 'unitig_0.g2341' => 'ugi', 'unitig_26.g10006' => 'ugi', 'unitig_26.g10008' => 'ugi', 'unitig_26.g9192' => 'ugi', 'vmacro14547' => 'vma', 'vmacro15333' => 'vma', 'vmacro18743' => 'vma', 'vmacro20166' => 'vma', 'VMungo0331G0523' => 'vmu', 'VMungo0331G1202' => 'vmu', 'VMungo0720G1228' => 'vmu', 'VMungo0720G1514' => 'vmu', 'VMungo1080G0169' => 'vmu', 'VMungo1127G1475' => 'vmu', 'VMungo1383G1208' => 'vmu', 'VMungo1383G1698' => 'vmu', 'Zm00001eb012270' => 'zma', 'Zm00001eb054100' => 'zma', 'Zm00001eb063350' => 'zma', 'Zm00001eb328560' => 'zma', 'Zm00001eb342820' => 'zma', 'Zm00001eb362210' => 'zma', 'Zm00001eb397730' => 'zma', 'Zm00001eb399750' => 'zma' ), 'gf_id' => 'HOM05D000959', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000959' ), 'data_identifier' => 'HOM05D000959', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000959', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '622', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p07100' => 'bna', 'A03p11720' => 'bna', 'A05p08300' => 'bna', 'A05p13380' => 'bna', 'A09p54130' => 'bna', 'A10p16690' => 'bna', 'A10p16700' => 'bna', 'A10p33390' => 'bna', 'Aa31LG10G16020' => 'aar', 'Aa31LG1G11810' => 'aar', 'Aa31LG1G11830' => 'aar', 'Aa31LG1G22510' => 'aar', 'Aa31LG5G4890' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5793' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2310' => 'aag', 'Actinidia08499' => 'ach', 'Actinidia11262' => 'ach', 'Actinidia23926' => 'ach', 'Actinidia34420' => 'ach', 'Actinidia36970' => 'ach', 'Ah.02g111220' => 'amhyb', 'Ah.15g097750' => 'amhyb', 'AL4G27500' => 'aly', 'AL6G11470' => 'aly', 'AL8G35950' => 'aly', 'AL8G35960' => 'aly', 'AL8G35970' => 'aly', 'Aqoxy1G00912' => 'aox', 'Aqoxy2G02253' => 'aox', 'Aqoxy2G02411' => 'aox', 'Aqoxy5G00485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BZ66YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K8ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM4FUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6BF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HFV7XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25JBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0YNNV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MAKK6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P70IT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP2Z6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V61LZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YWP64R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3S9AI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7PGHH' => 'arhy', 'AT2G32150' => 'ath', 'AT3G62040' => 'ath', 'AT5G02230' => 'ath', 'AT5G59480' => 'ath', 'AT5G59490' => 'ath', 'ATR0332G060' => 'atr', 'ATR0559G190' => 'atr', 'ATR0693G294' => 'atr', 'Atru.chr3.3975' => 'acertr', 'Atru.chr3.3976' => 'acertr', 'Atru.chr3.3977' => 'acertr', 'Atru.chr4.2498' => 'acertr', 'Atru.chr5.838' => 'acertr', 'Atru.chr8.1990' => 'acertr', 'Atru.chr8.1991' => 'acertr', 'Atru.chr8.1992' => 'acertr', 'AUR62001759' => 'cqu', 'AUR62009545' => 'cqu', 'AUR62010474' => 'cqu', 'AUR62025820' => 'cqu', 'AUR62030422' => 'cqu', 'AUR62033605' => 'cqu', 'AUR62038615' => 'cqu', 'AUR62041347' => 'cqu', 'BcaB01g04574' => 'bca', 'BcaB02g09263' => 'bca', 'BcaB02g10453' => 'bca', 'BcaB05g22513' => 'bca', 'BcaB08g36253' => 'bca', 'BcaB08g36254' => 'bca', 'BcaC01g06519' => 'bca', 'BcaC02g11889' => 'bca', 'BcaC03g14010' => 'bca', 'BcaC03g18439' => 'bca', 'BcaC04g19765' => 'bca', 'BcaC09g48432' => 'bca', 'BcaNung07302' => 'bca', 'BolC2t06040H' => 'bol', 'BolC2t07346H' => 'bol', 'BolC3t13817H' => 'bol', 'BolC4t22625H' => 'bol', 'BolC4t23297H' => 'bol', 'BolC8t51278H' => 'bol', 'BolC9t58050H' => 'bol', 'BolC9t58051H' => 'bol', 'BolC9t60163H' => 'bol', 'BraA02t04712Z' => 'bra', 'BraA02t05791Z' => 'bra', 'BraA03t10483Z' => 'bra', 'BraA05t19795Z' => 'bra', 'BraA05t20276Z' => 'bra', 'BraA09t40827Z' => 'bra', 'BraA10t43750Z' => 'bra', 'BraA10t43751Z' => 'bra', 'BraA10t45370Z' => 'bra', 'C02p00400' => 'bna', 'C02p12460' => 'bna', 'C03p13680' => 'bna', 'C04p10270' => 'bna', 'C04p17500' => 'bna', 'C08p37010' => 'bna', 'C09p51880' => 'bna', 'C09p51890' => 'bna', 'C09p74300' => 'bna', 'CAN.G179.26' => 'can', 'CAN.G3384.1' => 'can', 'CAN.G394.68' => 'can', 'CAN.G907.13' => 'can', 'CANSAT11G0012' => 'cansat', 'CANSAT25G1586' => 'cansat', 'CANSAT35G0735' => 'cansat', 'CANSAT54G0556' => 'cansat', 'CANSAT64G0356' => 'cansat', 'CANSAT78G2042' => 'cansat', 'CARHR125920' => 'chi', 'CARHR131910' => 'chi', 'CARHR172390' => 'chi', 'CARHR211140' => 'chi', 'CARHR285850' => 'chi', 'CARHR285860' => 'chi', 'Carub.0004s1347' => 'cru', 'Carub.0004s1960' => 'cru', 'Carub.0005s2880' => 'cru', 'Carub.0006s0107' => 'cru', 'Carub.0008s2015' => 'cru', 'Carub.0008s2016' => 'cru', 'Carub.0008s2017' => 'cru', 'Ca_01315_v3' => 'car', 'Ca_05063_v3' => 'car', 'Ca_10231_v3' => 'car', 'Ca_10913_v3' => 'car', 'Ca_19156_v3' => 'car', 'Ca_23644_v3' => 'car', 'Ca_26735_v3' => 'car', 'Cc01_g13130' => 'ccan', 'Cc02_g21690' => 'ccan', 'Cc03_g03600' => 'ccan', 'Cc06_g02510' => 'ccan', 'CDE02G1265' => 'cde', 'CDE05G0415' => 'cde', 'CDE08G1082' => 'cde', 'Cfa005780' => 'cfa', 'Cfa011522' => 'cfa', 'Cfa011523' => 'cfa', 'Cfa015627' => 'cfa', 'Cfa017359' => 'cfa', 'Ciclev10005687m.g' => 'ccl', 'Ciclev10012173m.g' => 'ccl', 'Ciclev10021621m.g' => 'ccl', 'Ciclev10028968m.g' => 'ccl', 'Ciclev10029907m.g' => 'ccl', 'CiPaw.01G164800' => 'cil', 'CiPaw.07G083700' => 'cil', 'CiPaw.07G127000' => 'cil', 'CiPaw.07G136900' => 'cil', 'CiPaw.08G081700' => 'cil', 'CiPaw.09G194600' => 'cil', 'CiPaw.10G146500' => 'cil', 'CiPaw.13G091500' => 'cil', 'CiPaw.13G091600' => 'cil', 'ClCG00G003390' => 'cla', 'ClCG01G007220' => 'cla', 'ClCG03G001370' => 'cla', 'ClCG04G008100' => 'cla', 'ClCG06G006110' => 'cla', 'ClCG06G006130' => 'cla', 'ClCG10G021210' => 'cla', 'COL.COLO4_07648' => 'col', 'COL.COLO4_07650' => 'col', 'COL.COLO4_07651' => 'col', 'COL.COLO4_14780' => 'col', 'COL.COLO4_18546' => 'col', 'COL.COLO4_18547' => 'col', 'COL.COLO4_23103' => 'col', 'COL.COLO4_30419' => 'col', 'COL.COLO4_34232' => 'col', 'Cpa.g.sc169.20' => 'cpa', 'Cpa.g.sc57.45' => 'cpa', 'Cpa.g.sc58.124' => 'cpa', 'Cpa.g.sc58.125' => 'cpa', 'Cpa.g.sc81.118' => 'cpa', 'Cpa.g.sc81.119' => 'cpa', 'Cre12.g524700' => 'cre', 'CsaV3_1G034430' => 'csa', 'CsaV3_1G034440' => 'csa', 'CsaV3_1G034450' => 'csa', 'CsaV3_3G034830' => 'csa', 'CsaV3_4G025090' => 'csa', 'CsaV3_5G018660' => 'csa', 'CsaV3_6G038160' => 'csa', 'CSS0003447' => 'camsi', 'CSS0017840' => 'camsi', 'CSS0019260' => 'camsi', 'CSS0040375' => 'camsi', 'CSS0042533' => 'camsi', 'DCAR_005960' => 'dca', 'DCAR_012104' => 'dca', 'DCAR_012105' => 'dca', 'DCAR_012293' => 'dca', 'DCAR_015632' => 'dca', 'DCAR_024602' => 'dca', 'DCAR_028752' => 'dca', 'Dinv06261' => 'din', 'Dinv13982' => 'din', 'Dinv17029' => 'din', 'Dinv18463' => 'din', 'Dinv33181' => 'din', 'Dinv35585' => 'din', 'Dinv37161' => 'din', 'Dinv42977' => 'din', 'Dinv43122' => 'din', 'Dinv44517' => 'din', 'Duzib093G0256' => 'dzi', 'Duzib106G1254' => 'dzi', 'Duzib128G1789' => 'dzi', 'Duzib133G0633' => 'dzi', 'Duzib138G0510' => 'dzi', 'Duzib150G1084' => 'dzi', 'Duzib168G0488' => 'dzi', 'Duzib168G1523' => 'dzi', 'Duzib170G0133' => 'dzi', 'ECA234G1433' => 'eca', 'ECA236G1432' => 'eca', 'ECA236G2256' => 'eca', 'ECA236G2365' => 'eca', 'ECA236G4830' => 'eca', 'ECA248G1505' => 'eca', 'EL10Ac3g06431' => 'bvu', 'EL10Ac5g12577' => 'bvu', 'EL10Ac6g13533' => 'bvu', 'EL10Ac7g16045' => 'bvu', 'Eucgr.A01281' => 'egr', 'Eucgr.B02326' => 'egr', 'Eucgr.H03532' => 'egr', 'Eucgr.K00553' => 'egr', 'Eucgr.K03116' => 'egr', 'FAN02G3963' => 'fan', 'FAN05G0438' => 'fan', 'FAN09G2434' => 'fan', 'FAN12G3984' => 'fan', 'FAN14G0798' => 'fan', 'FAN17G0652' => 'fan', 'FAN19G1988' => 'fan', 'FAN22G0632' => 'fan', 'FAN23G0387' => 'fan', 'FAN26G1323' => 'fan', 'FAN28G0666' => 'fan', 'FvH4_1g26080' => 'fve', 'FvH4_3g36780' => 'fve', 'FvH4_4g15270' => 'fve', 'FvH4_6g13490' => 'fve', 'Glyma.01G098700' => 'gma', 'Glyma.03G065900' => 'gma', 'Glyma.03G073754' => 'gma', 'Glyma.03G073758' => 'gma', 'Glyma.03G083200' => 'gma', 'Glyma.03G225500' => 'gma', 'Glyma.05G037766' => 'gma', 'Glyma.07G133500' => 'gma', 'Glyma.10G139400' => 'gma', 'Glyma.10G248900' => 'gma', 'Glyma.11G137800' => 'gma', 'Glyma.12G061300' => 'gma', 'Glyma.13G337900' => 'gma', 'Glyma.15G036600' => 'gma', 'Glyma.18G182800' => 'gma', 'Glyma.19G222500' => 'gma', 'Glyma.20G144800' => 'gma', 'Gohir.A01G222000' => 'ghi', 'Gohir.A03G044000' => 'ghi', 'Gohir.A03G044100' => 'ghi', 'Gohir.A04G083100' => 'ghi', 'Gohir.A07G127200' => 'ghi', 'Gohir.A07G132400' => 'ghi', 'Gohir.A08G000700' => 'ghi', 'Gohir.A11G327300' => 'ghi', 'Gohir.D01G211500' => 'ghi', 'Gohir.D03G123400' => 'ghi', 'Gohir.D03G123500' => 'ghi', 'Gohir.D04G121800' => 'ghi', 'Gohir.D07G131500' => 'ghi', 'Gohir.D07G136600' => 'ghi', 'Gohir.D08G011600' => 'ghi', 'Gohir.D11G346200' => 'ghi', 'Gorai.001G142800' => 'gra', 'Gorai.001G148700' => 'gra', 'Gorai.002G257300' => 'gra', 'Gorai.003G130000' => 'gra', 'Gorai.003G130100' => 'gra', 'Gorai.004G005300' => 'gra', 'Gorai.007G376500' => 'gra', 'Gorai.012G104700' => 'gra', 'GSVIVG01017946001' => 'vvi', 'GSVIVG01024928001' => 'vvi', 'GSVIVG01028227001' => 'vvi', 'GSVIVG01034151001' => 'vvi', 'HanXRQChr05g0135031' => 'han', 'HanXRQChr05g0135041' => 'han', 'HanXRQChr05g0140021' => 'han', 'HanXRQChr06g0178981' => 'han', 'HanXRQChr07g0188251' => 'han', 'HanXRQChr08g0235311' => 'han', 'HanXRQChr09g0271011' => 'han', 'HanXRQChr10g0293321' => 'han', 'HanXRQChr13g0388171' => 'han', 'Haze_00916' => 'cav', 'Haze_05063' => 'cav', 'Haze_20814' => 'cav', 'Haze_24128' => 'cav', 'Hma1.2p1_0745F.1_g212010' => 'hma', 'Hma1.2p1_0757F.1_g213260' => 'hma', 'Hma1.2p1_0936F.1_g238840' => 'hma', 'Hma1.2p1_1735F.1_g299890' => 'hma', 'Hma1.2p1_1861F.1_g305685' => 'hma', 'HPP92_003397' => 'vpl', 'HPP92_012597' => 'vpl', 'HPP92_015520' => 'vpl', 'HPP92_015539' => 'vpl', 'HPP92_020373' => 'vpl', 'Hund04938' => 'sun', 'Hund10677' => 'sun', 'Hund11033' => 'sun', 'Hund12155' => 'sun', 'Lalb_Chr01g0022551' => 'lal', 'Lalb_Chr03g0042341' => 'lal', 'Lalb_Chr07g0192931' => 'lal', 'Lalb_Chr12g0209551' => 'lal', 'Lalb_Chr19g0125251' => 'lal', 'Lalb_Chr19g0137891' => 'lal', 'Lalb_Chr21g0304641' => 'lal', 'Lalb_Chr21g0309881' => 'lal', 'Lj1A5T12' => 'lonja', 'Lj1C148G10' => 'lonja', 'Lj2A93T83' => 'lonja', 'Lj3A738G68' => 'lonja', 'Lj3C966T1' => 'lonja', 'Lj3g0018958' => 'lja', 'Lj3g0021831' => 'lja', 'Lj3g0025443' => 'lja', 'Lj4g0026809' => 'lja', 'Lj5g0012558' => 'lja', 'Lj5g0021586' => 'lja', 'Lsat_1_v5_gn_5_156840' => 'lsa', 'Lsat_1_v5_gn_8_73460' => 'lsa', 'Lsat_1_v5_gn_8_73481' => 'lsa', 'Lsat_1_v5_gn_9_31601' => 'lsa', 'Lsat_1_v5_gn_9_77320' => 'lsa', 'Manes.01G171300' => 'mes', 'Manes.01G171400' => 'mes', 'Manes.01G236100' => 'mes', 'Manes.02G130500' => 'mes', 'Manes.02G130600' => 'mes', 'Manes.03G180200' => 'mes', 'Manes.05G007000' => 'mes', 'Manes.08G084400' => 'mes', 'Manes.09G092600' => 'mes', 'Manes.15G027900' => 'mes', 'MBI04_g40948_MAGBIO' => 'mbi', 'MBI14_g12123_MAGBIO' => 'mbi', 'MBI18_g28915_MAGBIO' => 'mbi', 'MCO09G053' => 'mco', 'MCO11G782' => 'mco', 'MCO15G215' => 'mco', 'MD03G1088500' => 'mdo', 'MD03G1088600' => 'mdo', 'MD04G1130800' => 'mdo', 'MD09G1291700' => 'mdo', 'MD11G1097500' => 'mdo', 'MD11G1097600' => 'mdo', 'MD12G1143900' => 'mdo', 'MD13G1191400' => 'mdo', 'MD16G1191500' => 'mdo', 'Medtr1g085570' => 'mtr', 'Medtr1g104610' => 'mtr', 'Medtr2g097520' => 'mtr', 'Medtr4g021800' => 'mtr', 'Medtr4g021825' => 'mtr', 'Medtr4g064270' => 'mtr', 'Medtr4g064380' => 'mtr', 'Medtr7g062150' => 'mtr', 'MELO3C003138.2' => 'cme', 'MELO3C005187.2' => 'cme', 'MELO3C009252.2' => 'cme', 'MELO3C014481.2' => 'cme', 'MELO3C020616.2' => 'cme', 'MELO3C020617.2' => 'cme', 'MELO3C020618.2' => 'cme', 'Migut.G00328' => 'egut', 'Migut.J00320' => 'egut', 'Migut.L01000' => 'egut', 'Migut.L01953' => 'egut', 'MSTRG.10253' => 'ama', 'MSTRG.19077' => 'ama', 'MSTRG.26780' => 'ama', 'MSTRG.4023' => 'ama', 'MSTRG.5655' => 'ama', 'MSTRG.9992' => 'ama', 'Nitab4.5_0000043g0310' => 'nta', 'Nitab4.5_0000463g0080' => 'nta', 'Nitab4.5_0000705g0170' => 'nta', 'Nitab4.5_0001326g0060' => 'nta', 'Nitab4.5_0001628g0030' => 'nta', 'Nitab4.5_0002103g0110' => 'nta', 'Nitab4.5_0002946g0030' => 'nta', 'Nitab4.5_0004639g0030' => 'nta', 'Nn2g11149' => 'nnu', 'Nn2g13389' => 'nnu', 'Nn4g25326' => 'nnu', 'Nn4g26290' => 'nnu', 'Nn5g29865' => 'nnu', 'Oeu004163.1' => 'oeu', 'Oeu006901.1' => 'oeu', 'Oeu010096.1' => 'oeu', 'Oeu024340.1' => 'oeu', 'Oeu048369.1' => 'oeu', 'Os01g0973000' => 'osa', 'Os03g0273800' => 'osa', 'Os03g0701200' => 'osa', 'Os03g0834050' => 'osa', 'Os07g0634400' => 'osa', 'Peaxi162Scf00092g01414' => 'pax', 'Peaxi162Scf00165g00818' => 'pax', 'Peaxi162Scf00309g00516' => 'pax', 'Peaxi162Scf00774g00218' => 'pax', 'PGR004G1824' => 'pgr', 'PGR004G2606' => 'pgr', 'PGR031G2716' => 'pgr', 'PGR102G2460' => 'pgr', 'PGR142G2599' => 'pgr', 'PGSC0003DMG400000843' => 'stu', 'PGSC0003DMG400008829' => 'stu', 'PGSC0003DMG400030418' => 'stu', 'PGSC0003DMG400031834' => 'stu', 'PGSC0003DMG401028300' => 'stu', 'PGSC0003DMG402028300' => 'stu', 'Phvul.001G219300' => 'pvu', 'Phvul.007G056000' => 'pvu', 'Phvul.007G208000' => 'pvu', 'Phvul.008G119500' => 'pvu', 'Phvul.010G011200' => 'pvu', 'Phvul.010G014800' => 'pvu', 'Phvul.011G062900' => 'pvu', 'Phvul.L007043' => 'pvu', 'Potri.001G242300' => 'ptr', 'Potri.002G185300' => 'ptr', 'Potri.006G086900' => 'ptr', 'Potri.008G151700' => 'ptr', 'Potri.009G033500' => 'ptr', 'Potri.010G089300' => 'ptr', 'Potri.014G110800' => 'ptr', 'Pp3c27_8130' => 'ppa', 'Pp3c6_27410' => 'ppa', 'PRCOL_00001659' => 'pco', 'PRCOL_00001927' => 'pco', 'PRCOL_00003649' => 'pco', 'Prupe.1G011600' => 'ppe', 'Prupe.3G000800' => 'ppe', 'Prupe.3G001100' => 'ppe', 'Prupe.6G072700' => 'ppe', 'Prupe.6G072800' => 'ppe', 'Prupe.6G257300' => 'ppe', 'Prupe.8G033000' => 'ppe', 'Psat0s2633g0080' => 'psa', 'Psat0s3396g0080' => 'psa', 'Psat0s3396g0200' => 'psa', 'Psat3g139080' => 'psa', 'Psat5g285080' => 'psa', 'Psat6g157760' => 'psa', 'Psat6g208440' => 'psa', 'Psat7g215320' => 'psa', 'Psat7g215400' => 'psa', 'Psat7g235600' => 'psa', 'Psat7g235760' => 'psa', 'PSO063G4603' => 'pso', 'PSO210G0182' => 'pso', 'PSO210G0196' => 'pso', 'PSO339G0394' => 'pso', 'PSO339G4127' => 'pso', 'PSO513G0064' => 'pso', 'PSO761G0079' => 'pso', 'QL01p031003' => 'qlo', 'QL01p031078' => 'qlo', 'QL06p003004' => 'qlo', 'QL07p048731' => 'qlo', 'QL09p037427' => 'qlo', 'RcHm_v2.0_Chr3g0466361' => 'rch', 'RcHm_v2.0_Chr3g0485571' => 'rch', 'RcHm_v2.0_Chr4g0416551' => 'rch', 'RcHm_v2.0_Chr5g0065831' => 'rch', 'Rhsim01G0230500' => 'rsi', 'Rhsim05G0194000' => 'rsi', 'Rhsim08G0250400' => 'rsi', 'Sabra02G0131000' => 'sbr', 'Sabra06G0066300' => 'sbr', 'Sabra08G0115500' => 'sbr', 'Sabra09G0023900' => 'sbr', 'Sabra10G0054000' => 'sbr', 'Sabra14G0081500' => 'sbr', 'Sabra16G0147100' => 'sbr', 'SalBow2G2957' => 'sbo', 'SalBow4G3320' => 'sbo', 'SalBow8G1894' => 'sbo', 'Sc07g0007950' => 'sci', 'Sc12g0001360' => 'sci', 'Sc13g0004330' => 'sci', 'Sc20g0005010' => 'sci', 'Sed0000361' => 'sed', 'Sed0001706' => 'sed', 'Sed0002422' => 'sed', 'Sed0004029' => 'sed', 'Sed0004602' => 'sed', 'Sed0004943' => 'sed', 'Sed0008646' => 'sed', 'Sed0023313' => 'sed', 'Sed0024843' => 'sed', 'SEGI_00081' => 'sgi', 'SEGI_00947' => 'sgi', 'SEGI_04046' => 'sgi', 'SEGI_06880' => 'sgi', 'SEGI_09736' => 'sgi', 'SEGI_12741' => 'sgi', 'SEGI_14530' => 'sgi', 'SEGI_20705' => 'sgi', 'SEGI_26088' => 'sgi', 'SEGI_28323' => 'sgi', 'SEGI_33343' => 'sgi', 'SGA_v2.0_scaffold126G33775' => 'sas', 'SGA_v2.0_scaffold2G01337' => 'sas', 'SGA_v2.0_scaffold38G15006' => 'sas', 'SGA_v2.0_scaffold39G15264' => 'sas', 'SGA_v2.0_scaffold453G51880' => 'sas', 'SHI12696' => 'shi', 'SMO367G1096' => 'smo', 'Solyc01g068630.3' => 'sly', 'Solyc05g011880.3' => 'sly', 'Solyc06g076300.3' => 'sly', 'Solyc09g010940.4' => 'sly', 'Solyc09g075890.3' => 'sly', 'Sopen01g030560' => 'spe', 'Sopen05g006630' => 'spe', 'Sopen06g032720' => 'spe', 'Sopen09g005660' => 'spe', 'Sopen09g030690' => 'spe', 'Sp4g14540' => 'spa', 'Sp4g20030' => 'spa', 'Sp5g01320' => 'spa', 'Sp6g21170' => 'spa', 'Sp6g21180' => 'spa', 'Sp6g21190' => 'spa', 'Sp6g40220' => 'spa', 'TAR362G0122' => 'tar', 'TAR362G1338' => 'tar', 'TAR369G0590' => 'tar', 'TAR371G0824' => 'tar', 'TAR622G1429' => 'tar', 'TAR623G0734' => 'tar', 'TAR625G0441' => 'tar', 'TAR629G0976' => 'tar', 'TAR633G1195' => 'tar', 'TAR636G2660' => 'tar', 'THA.LOC104799440' => 'tha', 'THA.LOC104800966' => 'tha', 'THA.LOC104806559' => 'tha', 'THA.LOC104810765' => 'tha', 'THA.LOC104816266' => 'tha', 'THA.LOC104817419' => 'tha', 'THA.LOC104827021' => 'tha', 'Thecc.01G327400' => 'tca', 'Thecc.04G229200' => 'tca', 'Thecc.05G037400' => 'tca', 'Thecc.09G318600' => 'tca', 'Thecc.09G318700' => 'tca', 'Thhalv10006238m.g' => 'esa', 'Thhalv10014321m.g' => 'esa', 'Thhalv10014335m.g' => 'esa', 'Thhalv10015826m.g' => 'esa', 'Thhalv10017107m.g' => 'esa', 'Thhalv10017180m.g' => 'esa', 'Thhalv10029339m.g' => 'esa', 'TPR.G1699' => 'tpr', 'TPR.G23609' => 'tpr', 'TPR.G3081' => 'tpr', 'TPR.G40397' => 'tpr', 'TPR.G5522' => 'tpr', 'TPR.G5618' => 'tpr', 'TPR.G5626' => 'tpr', 'TWI09G1632' => 'twi', 'TWI23G1230' => 'twi', 'TWI53G1064' => 'twi', 'TWI59G0751' => 'twi', 'TWI74G0947' => 'twi', 'TWI77G0337' => 'twi', 'TWI79G1254' => 'twi', 'unitig_0.g2341' => 'ugi', 'unitig_26.g10006' => 'ugi', 'unitig_26.g10008' => 'ugi', 'unitig_26.g9192' => 'ugi', 'vmacro14547' => 'vma', 'vmacro15333' => 'vma', 'vmacro18743' => 'vma', 'vmacro20166' => 'vma', 'VMungo0331G0523' => 'vmu', 'VMungo0331G1202' => 'vmu', 'VMungo0720G1228' => 'vmu', 'VMungo0720G1514' => 'vmu', 'VMungo1080G0169' => 'vmu', 'VMungo1127G1475' => 'vmu', 'VMungo1383G1208' => 'vmu', 'VMungo1383G1698' => 'vmu', 'Zm00001eb012270' => 'zma', 'Zm00001eb054100' => 'zma', 'Zm00001eb063350' => 'zma', 'Zm00001eb328560' => 'zma', 'Zm00001eb342820' => 'zma', 'Zm00001eb362210' => 'zma', 'Zm00001eb397730' => 'zma', 'Zm00001eb399750' => 'zma' ) $gf_id = 'HOM05D000959' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000959' ) $data_identifier = 'HOM05D000959' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 5, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 5, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 10, 'mbi' => (int) 3, 'mco' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 2, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 3, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 11, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399750' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000959', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '622', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p07100' => 'bna', 'A03p11720' => 'bna', 'A05p08300' => 'bna', 'A05p13380' => 'bna', 'A09p54130' => 'bna', 'A10p16690' => 'bna', 'A10p16700' => 'bna', 'A10p33390' => 'bna', 'Aa31LG10G16020' => 'aar', 'Aa31LG1G11810' => 'aar', 'Aa31LG1G11830' => 'aar', 'Aa31LG1G22510' => 'aar', 'Aa31LG5G4890' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5793' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2310' => 'aag', 'Actinidia08499' => 'ach', 'Actinidia11262' => 'ach', 'Actinidia23926' => 'ach', 'Actinidia34420' => 'ach', 'Actinidia36970' => 'ach', 'Ah.02g111220' => 'amhyb', 'Ah.15g097750' => 'amhyb', 'AL4G27500' => 'aly', 'AL6G11470' => 'aly', 'AL8G35950' => 'aly', 'AL8G35960' => 'aly', 'AL8G35970' => 'aly', 'Aqoxy1G00912' => 'aox', 'Aqoxy2G02253' => 'aox', 'Aqoxy2G02411' => 'aox', 'Aqoxy5G00485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BZ66YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K8ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM4FUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6BF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HFV7XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25JBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0YNNV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MAKK6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P70IT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP2Z6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V61LZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YWP64R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3S9AI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7PGHH' => 'arhy', 'AT2G32150' => 'ath', 'AT3G62040' => 'ath', 'AT5G02230' => 'ath', 'AT5G59480' => 'ath', 'AT5G59490' => 'ath', 'ATR0332G060' => 'atr', 'ATR0559G190' => 'atr', 'ATR0693G294' => 'atr', 'Atru.chr3.3975' => 'acertr', 'Atru.chr3.3976' => 'acertr', 'Atru.chr3.3977' => 'acertr', 'Atru.chr4.2498' => 'acertr', 'Atru.chr5.838' => 'acertr', 'Atru.chr8.1990' => 'acertr', 'Atru.chr8.1991' => 'acertr', 'Atru.chr8.1992' => 'acertr', 'AUR62001759' => 'cqu', 'AUR62009545' => 'cqu', 'AUR62010474' => 'cqu', 'AUR62025820' => 'cqu', 'AUR62030422' => 'cqu', 'AUR62033605' => 'cqu', 'AUR62038615' => 'cqu', 'AUR62041347' => 'cqu', 'BcaB01g04574' => 'bca', 'BcaB02g09263' => 'bca', 'BcaB02g10453' => 'bca', 'BcaB05g22513' => 'bca', 'BcaB08g36253' => 'bca', 'BcaB08g36254' => 'bca', 'BcaC01g06519' => 'bca', 'BcaC02g11889' => 'bca', 'BcaC03g14010' => 'bca', 'BcaC03g18439' => 'bca', 'BcaC04g19765' => 'bca', 'BcaC09g48432' => 'bca', 'BcaNung07302' => 'bca', 'BolC2t06040H' => 'bol', 'BolC2t07346H' => 'bol', 'BolC3t13817H' => 'bol', 'BolC4t22625H' => 'bol', 'BolC4t23297H' => 'bol', 'BolC8t51278H' => 'bol', 'BolC9t58050H' => 'bol', 'BolC9t58051H' => 'bol', 'BolC9t60163H' => 'bol', 'BraA02t04712Z' => 'bra', 'BraA02t05791Z' => 'bra', 'BraA03t10483Z' => 'bra', 'BraA05t19795Z' => 'bra', 'BraA05t20276Z' => 'bra', 'BraA09t40827Z' => 'bra', 'BraA10t43750Z' => 'bra', 'BraA10t43751Z' => 'bra', 'BraA10t45370Z' => 'bra', 'C02p00400' => 'bna', 'C02p12460' => 'bna', 'C03p13680' => 'bna', 'C04p10270' => 'bna', 'C04p17500' => 'bna', 'C08p37010' => 'bna', 'C09p51880' => 'bna', 'C09p51890' => 'bna', 'C09p74300' => 'bna', 'CAN.G179.26' => 'can', 'CAN.G3384.1' => 'can', 'CAN.G394.68' => 'can', 'CAN.G907.13' => 'can', 'CANSAT11G0012' => 'cansat', 'CANSAT25G1586' => 'cansat', 'CANSAT35G0735' => 'cansat', 'CANSAT54G0556' => 'cansat', 'CANSAT64G0356' => 'cansat', 'CANSAT78G2042' => 'cansat', 'CARHR125920' => 'chi', 'CARHR131910' => 'chi', 'CARHR172390' => 'chi', 'CARHR211140' => 'chi', 'CARHR285850' => 'chi', 'CARHR285860' => 'chi', 'Carub.0004s1347' => 'cru', 'Carub.0004s1960' => 'cru', 'Carub.0005s2880' => 'cru', 'Carub.0006s0107' => 'cru', 'Carub.0008s2015' => 'cru', 'Carub.0008s2016' => 'cru', 'Carub.0008s2017' => 'cru', 'Ca_01315_v3' => 'car', 'Ca_05063_v3' => 'car', 'Ca_10231_v3' => 'car', 'Ca_10913_v3' => 'car', 'Ca_19156_v3' => 'car', 'Ca_23644_v3' => 'car', 'Ca_26735_v3' => 'car', 'Cc01_g13130' => 'ccan', 'Cc02_g21690' => 'ccan', 'Cc03_g03600' => 'ccan', 'Cc06_g02510' => 'ccan', 'CDE02G1265' => 'cde', 'CDE05G0415' => 'cde', 'CDE08G1082' => 'cde', 'Cfa005780' => 'cfa', 'Cfa011522' => 'cfa', 'Cfa011523' => 'cfa', 'Cfa015627' => 'cfa', 'Cfa017359' => 'cfa', 'Ciclev10005687m.g' => 'ccl', 'Ciclev10012173m.g' => 'ccl', 'Ciclev10021621m.g' => 'ccl', 'Ciclev10028968m.g' => 'ccl', 'Ciclev10029907m.g' => 'ccl', 'CiPaw.01G164800' => 'cil', 'CiPaw.07G083700' => 'cil', 'CiPaw.07G127000' => 'cil', 'CiPaw.07G136900' => 'cil', 'CiPaw.08G081700' => 'cil', 'CiPaw.09G194600' => 'cil', 'CiPaw.10G146500' => 'cil', 'CiPaw.13G091500' => 'cil', 'CiPaw.13G091600' => 'cil', 'ClCG00G003390' => 'cla', 'ClCG01G007220' => 'cla', 'ClCG03G001370' => 'cla', 'ClCG04G008100' => 'cla', 'ClCG06G006110' => 'cla', 'ClCG06G006130' => 'cla', 'ClCG10G021210' => 'cla', 'COL.COLO4_07648' => 'col', 'COL.COLO4_07650' => 'col', 'COL.COLO4_07651' => 'col', 'COL.COLO4_14780' => 'col', 'COL.COLO4_18546' => 'col', 'COL.COLO4_18547' => 'col', 'COL.COLO4_23103' => 'col', 'COL.COLO4_30419' => 'col', 'COL.COLO4_34232' => 'col', 'Cpa.g.sc169.20' => 'cpa', 'Cpa.g.sc57.45' => 'cpa', 'Cpa.g.sc58.124' => 'cpa', 'Cpa.g.sc58.125' => 'cpa', 'Cpa.g.sc81.118' => 'cpa', 'Cpa.g.sc81.119' => 'cpa', 'Cre12.g524700' => 'cre', 'CsaV3_1G034430' => 'csa', 'CsaV3_1G034440' => 'csa', 'CsaV3_1G034450' => 'csa', 'CsaV3_3G034830' => 'csa', 'CsaV3_4G025090' => 'csa', 'CsaV3_5G018660' => 'csa', 'CsaV3_6G038160' => 'csa', 'CSS0003447' => 'camsi', 'CSS0017840' => 'camsi', 'CSS0019260' => 'camsi', 'CSS0040375' => 'camsi', 'CSS0042533' => 'camsi', 'DCAR_005960' => 'dca', 'DCAR_012104' => 'dca', 'DCAR_012105' => 'dca', 'DCAR_012293' => 'dca', 'DCAR_015632' => 'dca', 'DCAR_024602' => 'dca', 'DCAR_028752' => 'dca', 'Dinv06261' => 'din', 'Dinv13982' => 'din', 'Dinv17029' => 'din', 'Dinv18463' => 'din', 'Dinv33181' => 'din', 'Dinv35585' => 'din', 'Dinv37161' => 'din', 'Dinv42977' => 'din', 'Dinv43122' => 'din', 'Dinv44517' => 'din', 'Duzib093G0256' => 'dzi', 'Duzib106G1254' => 'dzi', 'Duzib128G1789' => 'dzi', 'Duzib133G0633' => 'dzi', 'Duzib138G0510' => 'dzi', 'Duzib150G1084' => 'dzi', 'Duzib168G0488' => 'dzi', 'Duzib168G1523' => 'dzi', 'Duzib170G0133' => 'dzi', 'ECA234G1433' => 'eca', 'ECA236G1432' => 'eca', 'ECA236G2256' => 'eca', 'ECA236G2365' => 'eca', 'ECA236G4830' => 'eca', 'ECA248G1505' => 'eca', 'EL10Ac3g06431' => 'bvu', 'EL10Ac5g12577' => 'bvu', 'EL10Ac6g13533' => 'bvu', 'EL10Ac7g16045' => 'bvu', 'Eucgr.A01281' => 'egr', 'Eucgr.B02326' => 'egr', 'Eucgr.H03532' => 'egr', 'Eucgr.K00553' => 'egr', 'Eucgr.K03116' => 'egr', 'FAN02G3963' => 'fan', 'FAN05G0438' => 'fan', 'FAN09G2434' => 'fan', 'FAN12G3984' => 'fan', 'FAN14G0798' => 'fan', 'FAN17G0652' => 'fan', 'FAN19G1988' => 'fan', 'FAN22G0632' => 'fan', 'FAN23G0387' => 'fan', 'FAN26G1323' => 'fan', 'FAN28G0666' => 'fan', 'FvH4_1g26080' => 'fve', 'FvH4_3g36780' => 'fve', 'FvH4_4g15270' => 'fve', 'FvH4_6g13490' => 'fve', 'Glyma.01G098700' => 'gma', 'Glyma.03G065900' => 'gma', 'Glyma.03G073754' => 'gma', 'Glyma.03G073758' => 'gma', 'Glyma.03G083200' => 'gma', 'Glyma.03G225500' => 'gma', 'Glyma.05G037766' => 'gma', 'Glyma.07G133500' => 'gma', 'Glyma.10G139400' => 'gma', 'Glyma.10G248900' => 'gma', 'Glyma.11G137800' => 'gma', 'Glyma.12G061300' => 'gma', 'Glyma.13G337900' => 'gma', 'Glyma.15G036600' => 'gma', 'Glyma.18G182800' => 'gma', 'Glyma.19G222500' => 'gma', 'Glyma.20G144800' => 'gma', 'Gohir.A01G222000' => 'ghi', 'Gohir.A03G044000' => 'ghi', 'Gohir.A03G044100' => 'ghi', 'Gohir.A04G083100' => 'ghi', 'Gohir.A07G127200' => 'ghi', 'Gohir.A07G132400' => 'ghi', 'Gohir.A08G000700' => 'ghi', 'Gohir.A11G327300' => 'ghi', 'Gohir.D01G211500' => 'ghi', 'Gohir.D03G123400' => 'ghi', 'Gohir.D03G123500' => 'ghi', 'Gohir.D04G121800' => 'ghi', 'Gohir.D07G131500' => 'ghi', 'Gohir.D07G136600' => 'ghi', 'Gohir.D08G011600' => 'ghi', 'Gohir.D11G346200' => 'ghi', 'Gorai.001G142800' => 'gra', 'Gorai.001G148700' => 'gra', 'Gorai.002G257300' => 'gra', 'Gorai.003G130000' => 'gra', 'Gorai.003G130100' => 'gra', 'Gorai.004G005300' => 'gra', 'Gorai.007G376500' => 'gra', 'Gorai.012G104700' => 'gra', 'GSVIVG01017946001' => 'vvi', 'GSVIVG01024928001' => 'vvi', 'GSVIVG01028227001' => 'vvi', 'GSVIVG01034151001' => 'vvi', 'HanXRQChr05g0135031' => 'han', 'HanXRQChr05g0135041' => 'han', 'HanXRQChr05g0140021' => 'han', 'HanXRQChr06g0178981' => 'han', 'HanXRQChr07g0188251' => 'han', 'HanXRQChr08g0235311' => 'han', 'HanXRQChr09g0271011' => 'han', 'HanXRQChr10g0293321' => 'han', 'HanXRQChr13g0388171' => 'han', 'Haze_00916' => 'cav', 'Haze_05063' => 'cav', 'Haze_20814' => 'cav', 'Haze_24128' => 'cav', 'Hma1.2p1_0745F.1_g212010' => 'hma', 'Hma1.2p1_0757F.1_g213260' => 'hma', 'Hma1.2p1_0936F.1_g238840' => 'hma', 'Hma1.2p1_1735F.1_g299890' => 'hma', 'Hma1.2p1_1861F.1_g305685' => 'hma', 'HPP92_003397' => 'vpl', 'HPP92_012597' => 'vpl', 'HPP92_015520' => 'vpl', 'HPP92_015539' => 'vpl', 'HPP92_020373' => 'vpl', 'Hund04938' => 'sun', 'Hund10677' => 'sun', 'Hund11033' => 'sun', 'Hund12155' => 'sun', 'Lalb_Chr01g0022551' => 'lal', 'Lalb_Chr03g0042341' => 'lal', 'Lalb_Chr07g0192931' => 'lal', 'Lalb_Chr12g0209551' => 'lal', 'Lalb_Chr19g0125251' => 'lal', 'Lalb_Chr19g0137891' => 'lal', 'Lalb_Chr21g0304641' => 'lal', 'Lalb_Chr21g0309881' => 'lal', 'Lj1A5T12' => 'lonja', 'Lj1C148G10' => 'lonja', 'Lj2A93T83' => 'lonja', 'Lj3A738G68' => 'lonja', 'Lj3C966T1' => 'lonja', 'Lj3g0018958' => 'lja', 'Lj3g0021831' => 'lja', 'Lj3g0025443' => 'lja', 'Lj4g0026809' => 'lja', 'Lj5g0012558' => 'lja', 'Lj5g0021586' => 'lja', 'Lsat_1_v5_gn_5_156840' => 'lsa', 'Lsat_1_v5_gn_8_73460' => 'lsa', 'Lsat_1_v5_gn_8_73481' => 'lsa', 'Lsat_1_v5_gn_9_31601' => 'lsa', 'Lsat_1_v5_gn_9_77320' => 'lsa', 'Manes.01G171300' => 'mes', 'Manes.01G171400' => 'mes', 'Manes.01G236100' => 'mes', 'Manes.02G130500' => 'mes', 'Manes.02G130600' => 'mes', 'Manes.03G180200' => 'mes', 'Manes.05G007000' => 'mes', 'Manes.08G084400' => 'mes', 'Manes.09G092600' => 'mes', 'Manes.15G027900' => 'mes', 'MBI04_g40948_MAGBIO' => 'mbi', 'MBI14_g12123_MAGBIO' => 'mbi', 'MBI18_g28915_MAGBIO' => 'mbi', 'MCO09G053' => 'mco', 'MCO11G782' => 'mco', 'MCO15G215' => 'mco', 'MD03G1088500' => 'mdo', 'MD03G1088600' => 'mdo', 'MD04G1130800' => 'mdo', 'MD09G1291700' => 'mdo', 'MD11G1097500' => 'mdo', 'MD11G1097600' => 'mdo', 'MD12G1143900' => 'mdo', 'MD13G1191400' => 'mdo', 'MD16G1191500' => 'mdo', 'Medtr1g085570' => 'mtr', 'Medtr1g104610' => 'mtr', 'Medtr2g097520' => 'mtr', 'Medtr4g021800' => 'mtr', 'Medtr4g021825' => 'mtr', 'Medtr4g064270' => 'mtr', 'Medtr4g064380' => 'mtr', 'Medtr7g062150' => 'mtr', 'MELO3C003138.2' => 'cme', 'MELO3C005187.2' => 'cme', 'MELO3C009252.2' => 'cme', 'MELO3C014481.2' => 'cme', 'MELO3C020616.2' => 'cme', 'MELO3C020617.2' => 'cme', 'MELO3C020618.2' => 'cme', 'Migut.G00328' => 'egut', 'Migut.J00320' => 'egut', 'Migut.L01000' => 'egut', 'Migut.L01953' => 'egut', 'MSTRG.10253' => 'ama', 'MSTRG.19077' => 'ama', 'MSTRG.26780' => 'ama', 'MSTRG.4023' => 'ama', 'MSTRG.5655' => 'ama', 'MSTRG.9992' => 'ama', 'Nitab4.5_0000043g0310' => 'nta', 'Nitab4.5_0000463g0080' => 'nta', 'Nitab4.5_0000705g0170' => 'nta', 'Nitab4.5_0001326g0060' => 'nta', 'Nitab4.5_0001628g0030' => 'nta', 'Nitab4.5_0002103g0110' => 'nta', 'Nitab4.5_0002946g0030' => 'nta', 'Nitab4.5_0004639g0030' => 'nta', 'Nn2g11149' => 'nnu', 'Nn2g13389' => 'nnu', 'Nn4g25326' => 'nnu', 'Nn4g26290' => 'nnu', 'Nn5g29865' => 'nnu', 'Oeu004163.1' => 'oeu', 'Oeu006901.1' => 'oeu', 'Oeu010096.1' => 'oeu', 'Oeu024340.1' => 'oeu', 'Oeu048369.1' => 'oeu', 'Os01g0973000' => 'osa', 'Os03g0273800' => 'osa', 'Os03g0701200' => 'osa', 'Os03g0834050' => 'osa', 'Os07g0634400' => 'osa', 'Peaxi162Scf00092g01414' => 'pax', 'Peaxi162Scf00165g00818' => 'pax', 'Peaxi162Scf00309g00516' => 'pax', 'Peaxi162Scf00774g00218' => 'pax', 'PGR004G1824' => 'pgr', 'PGR004G2606' => 'pgr', 'PGR031G2716' => 'pgr', 'PGR102G2460' => 'pgr', 'PGR142G2599' => 'pgr', 'PGSC0003DMG400000843' => 'stu', 'PGSC0003DMG400008829' => 'stu', 'PGSC0003DMG400030418' => 'stu', 'PGSC0003DMG400031834' => 'stu', 'PGSC0003DMG401028300' => 'stu', 'PGSC0003DMG402028300' => 'stu', 'Phvul.001G219300' => 'pvu', 'Phvul.007G056000' => 'pvu', 'Phvul.007G208000' => 'pvu', 'Phvul.008G119500' => 'pvu', 'Phvul.010G011200' => 'pvu', 'Phvul.010G014800' => 'pvu', 'Phvul.011G062900' => 'pvu', 'Phvul.L007043' => 'pvu', 'Potri.001G242300' => 'ptr', 'Potri.002G185300' => 'ptr', 'Potri.006G086900' => 'ptr', 'Potri.008G151700' => 'ptr', 'Potri.009G033500' => 'ptr', 'Potri.010G089300' => 'ptr', 'Potri.014G110800' => 'ptr', 'Pp3c27_8130' => 'ppa', 'Pp3c6_27410' => 'ppa', 'PRCOL_00001659' => 'pco', 'PRCOL_00001927' => 'pco', 'PRCOL_00003649' => 'pco', 'Prupe.1G011600' => 'ppe', 'Prupe.3G000800' => 'ppe', 'Prupe.3G001100' => 'ppe', 'Prupe.6G072700' => 'ppe', 'Prupe.6G072800' => 'ppe', 'Prupe.6G257300' => 'ppe', 'Prupe.8G033000' => 'ppe', 'Psat0s2633g0080' => 'psa', 'Psat0s3396g0080' => 'psa', 'Psat0s3396g0200' => 'psa', 'Psat3g139080' => 'psa', 'Psat5g285080' => 'psa', 'Psat6g157760' => 'psa', 'Psat6g208440' => 'psa', 'Psat7g215320' => 'psa', 'Psat7g215400' => 'psa', 'Psat7g235600' => 'psa', 'Psat7g235760' => 'psa', 'PSO063G4603' => 'pso', 'PSO210G0182' => 'pso', 'PSO210G0196' => 'pso', 'PSO339G0394' => 'pso', 'PSO339G4127' => 'pso', 'PSO513G0064' => 'pso', 'PSO761G0079' => 'pso', 'QL01p031003' => 'qlo', 'QL01p031078' => 'qlo', 'QL06p003004' => 'qlo', 'QL07p048731' => 'qlo', 'QL09p037427' => 'qlo', 'RcHm_v2.0_Chr3g0466361' => 'rch', 'RcHm_v2.0_Chr3g0485571' => 'rch', 'RcHm_v2.0_Chr4g0416551' => 'rch', 'RcHm_v2.0_Chr5g0065831' => 'rch', 'Rhsim01G0230500' => 'rsi', 'Rhsim05G0194000' => 'rsi', 'Rhsim08G0250400' => 'rsi', 'Sabra02G0131000' => 'sbr', 'Sabra06G0066300' => 'sbr', 'Sabra08G0115500' => 'sbr', 'Sabra09G0023900' => 'sbr', 'Sabra10G0054000' => 'sbr', 'Sabra14G0081500' => 'sbr', 'Sabra16G0147100' => 'sbr', 'SalBow2G2957' => 'sbo', 'SalBow4G3320' => 'sbo', 'SalBow8G1894' => 'sbo', 'Sc07g0007950' => 'sci', 'Sc12g0001360' => 'sci', 'Sc13g0004330' => 'sci', 'Sc20g0005010' => 'sci', 'Sed0000361' => 'sed', 'Sed0001706' => 'sed', 'Sed0002422' => 'sed', 'Sed0004029' => 'sed', 'Sed0004602' => 'sed', 'Sed0004943' => 'sed', 'Sed0008646' => 'sed', 'Sed0023313' => 'sed', 'Sed0024843' => 'sed', 'SEGI_00081' => 'sgi', 'SEGI_00947' => 'sgi', 'SEGI_04046' => 'sgi', 'SEGI_06880' => 'sgi', 'SEGI_09736' => 'sgi', 'SEGI_12741' => 'sgi', 'SEGI_14530' => 'sgi', 'SEGI_20705' => 'sgi', 'SEGI_26088' => 'sgi', 'SEGI_28323' => 'sgi', 'SEGI_33343' => 'sgi', 'SGA_v2.0_scaffold126G33775' => 'sas', 'SGA_v2.0_scaffold2G01337' => 'sas', 'SGA_v2.0_scaffold38G15006' => 'sas', 'SGA_v2.0_scaffold39G15264' => 'sas', 'SGA_v2.0_scaffold453G51880' => 'sas', 'SHI12696' => 'shi', 'SMO367G1096' => 'smo', 'Solyc01g068630.3' => 'sly', 'Solyc05g011880.3' => 'sly', 'Solyc06g076300.3' => 'sly', 'Solyc09g010940.4' => 'sly', 'Solyc09g075890.3' => 'sly', 'Sopen01g030560' => 'spe', 'Sopen05g006630' => 'spe', 'Sopen06g032720' => 'spe', 'Sopen09g005660' => 'spe', 'Sopen09g030690' => 'spe', 'Sp4g14540' => 'spa', 'Sp4g20030' => 'spa', 'Sp5g01320' => 'spa', 'Sp6g21170' => 'spa', 'Sp6g21180' => 'spa', 'Sp6g21190' => 'spa', 'Sp6g40220' => 'spa', 'TAR362G0122' => 'tar', 'TAR362G1338' => 'tar', 'TAR369G0590' => 'tar', 'TAR371G0824' => 'tar', 'TAR622G1429' => 'tar', 'TAR623G0734' => 'tar', 'TAR625G0441' => 'tar', 'TAR629G0976' => 'tar', 'TAR633G1195' => 'tar', 'TAR636G2660' => 'tar', 'THA.LOC104799440' => 'tha', 'THA.LOC104800966' => 'tha', 'THA.LOC104806559' => 'tha', 'THA.LOC104810765' => 'tha', 'THA.LOC104816266' => 'tha', 'THA.LOC104817419' => 'tha', 'THA.LOC104827021' => 'tha', 'Thecc.01G327400' => 'tca', 'Thecc.04G229200' => 'tca', 'Thecc.05G037400' => 'tca', 'Thecc.09G318600' => 'tca', 'Thecc.09G318700' => 'tca', 'Thhalv10006238m.g' => 'esa', 'Thhalv10014321m.g' => 'esa', 'Thhalv10014335m.g' => 'esa', 'Thhalv10015826m.g' => 'esa', 'Thhalv10017107m.g' => 'esa', 'Thhalv10017180m.g' => 'esa', 'Thhalv10029339m.g' => 'esa', 'TPR.G1699' => 'tpr', 'TPR.G23609' => 'tpr', 'TPR.G3081' => 'tpr', 'TPR.G40397' => 'tpr', 'TPR.G5522' => 'tpr', 'TPR.G5618' => 'tpr', 'TPR.G5626' => 'tpr', 'TWI09G1632' => 'twi', 'TWI23G1230' => 'twi', 'TWI53G1064' => 'twi', 'TWI59G0751' => 'twi', 'TWI74G0947' => 'twi', 'TWI77G0337' => 'twi', 'TWI79G1254' => 'twi', 'unitig_0.g2341' => 'ugi', 'unitig_26.g10006' => 'ugi', 'unitig_26.g10008' => 'ugi', 'unitig_26.g9192' => 'ugi', 'vmacro14547' => 'vma', 'vmacro15333' => 'vma', 'vmacro18743' => 'vma', 'vmacro20166' => 'vma', 'VMungo0331G0523' => 'vmu', 'VMungo0331G1202' => 'vmu', 'VMungo0720G1228' => 'vmu', 'VMungo0720G1514' => 'vmu', 'VMungo1080G0169' => 'vmu', 'VMungo1127G1475' => 'vmu', 'VMungo1383G1208' => 'vmu', 'VMungo1383G1698' => 'vmu', 'Zm00001eb012270' => 'zma', 'Zm00001eb054100' => 'zma', 'Zm00001eb063350' => 'zma', 'Zm00001eb328560' => 'zma', 'Zm00001eb342820' => 'zma', 'Zm00001eb362210' => 'zma', 'Zm00001eb397730' => 'zma', 'Zm00001eb399750' => 'zma' ), 'gf_id' => 'HOM05D000959', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000959' ), 'data_identifier' => 'HOM05D000959', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000959', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '622', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p07100' => 'bna', 'A03p11720' => 'bna', 'A05p08300' => 'bna', 'A05p13380' => 'bna', 'A09p54130' => 'bna', 'A10p16690' => 'bna', 'A10p16700' => 'bna', 'A10p33390' => 'bna', 'Aa31LG10G16020' => 'aar', 'Aa31LG1G11810' => 'aar', 'Aa31LG1G11830' => 'aar', 'Aa31LG1G22510' => 'aar', 'Aa31LG5G4890' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5793' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2310' => 'aag', 'Actinidia08499' => 'ach', 'Actinidia11262' => 'ach', 'Actinidia23926' => 'ach', 'Actinidia34420' => 'ach', 'Actinidia36970' => 'ach', 'Ah.02g111220' => 'amhyb', 'Ah.15g097750' => 'amhyb', 'AL4G27500' => 'aly', 'AL6G11470' => 'aly', 'AL8G35950' => 'aly', 'AL8G35960' => 'aly', 'AL8G35970' => 'aly', 'Aqoxy1G00912' => 'aox', 'Aqoxy2G02253' => 'aox', 'Aqoxy2G02411' => 'aox', 'Aqoxy5G00485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BZ66YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K8ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM4FUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6BF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HFV7XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25JBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0YNNV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MAKK6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P70IT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP2Z6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V61LZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YWP64R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3S9AI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7PGHH' => 'arhy', 'AT2G32150' => 'ath', 'AT3G62040' => 'ath', 'AT5G02230' => 'ath', 'AT5G59480' => 'ath', 'AT5G59490' => 'ath', 'ATR0332G060' => 'atr', 'ATR0559G190' => 'atr', 'ATR0693G294' => 'atr', 'Atru.chr3.3975' => 'acertr', 'Atru.chr3.3976' => 'acertr', 'Atru.chr3.3977' => 'acertr', 'Atru.chr4.2498' => 'acertr', 'Atru.chr5.838' => 'acertr', 'Atru.chr8.1990' => 'acertr', 'Atru.chr8.1991' => 'acertr', 'Atru.chr8.1992' => 'acertr', 'AUR62001759' => 'cqu', 'AUR62009545' => 'cqu', 'AUR62010474' => 'cqu', 'AUR62025820' => 'cqu', 'AUR62030422' => 'cqu', 'AUR62033605' => 'cqu', 'AUR62038615' => 'cqu', 'AUR62041347' => 'cqu', 'BcaB01g04574' => 'bca', 'BcaB02g09263' => 'bca', 'BcaB02g10453' => 'bca', 'BcaB05g22513' => 'bca', 'BcaB08g36253' => 'bca', 'BcaB08g36254' => 'bca', 'BcaC01g06519' => 'bca', 'BcaC02g11889' => 'bca', 'BcaC03g14010' => 'bca', 'BcaC03g18439' => 'bca', 'BcaC04g19765' => 'bca', 'BcaC09g48432' => 'bca', 'BcaNung07302' => 'bca', 'BolC2t06040H' => 'bol', 'BolC2t07346H' => 'bol', 'BolC3t13817H' => 'bol', 'BolC4t22625H' => 'bol', 'BolC4t23297H' => 'bol', 'BolC8t51278H' => 'bol', 'BolC9t58050H' => 'bol', 'BolC9t58051H' => 'bol', 'BolC9t60163H' => 'bol', 'BraA02t04712Z' => 'bra', 'BraA02t05791Z' => 'bra', 'BraA03t10483Z' => 'bra', 'BraA05t19795Z' => 'bra', 'BraA05t20276Z' => 'bra', 'BraA09t40827Z' => 'bra', 'BraA10t43750Z' => 'bra', 'BraA10t43751Z' => 'bra', 'BraA10t45370Z' => 'bra', 'C02p00400' => 'bna', 'C02p12460' => 'bna', 'C03p13680' => 'bna', 'C04p10270' => 'bna', 'C04p17500' => 'bna', 'C08p37010' => 'bna', 'C09p51880' => 'bna', 'C09p51890' => 'bna', 'C09p74300' => 'bna', 'CAN.G179.26' => 'can', 'CAN.G3384.1' => 'can', 'CAN.G394.68' => 'can', 'CAN.G907.13' => 'can', 'CANSAT11G0012' => 'cansat', 'CANSAT25G1586' => 'cansat', 'CANSAT35G0735' => 'cansat', 'CANSAT54G0556' => 'cansat', 'CANSAT64G0356' => 'cansat', 'CANSAT78G2042' => 'cansat', 'CARHR125920' => 'chi', 'CARHR131910' => 'chi', 'CARHR172390' => 'chi', 'CARHR211140' => 'chi', 'CARHR285850' => 'chi', 'CARHR285860' => 'chi', 'Carub.0004s1347' => 'cru', 'Carub.0004s1960' => 'cru', 'Carub.0005s2880' => 'cru', 'Carub.0006s0107' => 'cru', 'Carub.0008s2015' => 'cru', 'Carub.0008s2016' => 'cru', 'Carub.0008s2017' => 'cru', 'Ca_01315_v3' => 'car', 'Ca_05063_v3' => 'car', 'Ca_10231_v3' => 'car', 'Ca_10913_v3' => 'car', 'Ca_19156_v3' => 'car', 'Ca_23644_v3' => 'car', 'Ca_26735_v3' => 'car', 'Cc01_g13130' => 'ccan', 'Cc02_g21690' => 'ccan', 'Cc03_g03600' => 'ccan', 'Cc06_g02510' => 'ccan', 'CDE02G1265' => 'cde', 'CDE05G0415' => 'cde', 'CDE08G1082' => 'cde', 'Cfa005780' => 'cfa', 'Cfa011522' => 'cfa', 'Cfa011523' => 'cfa', 'Cfa015627' => 'cfa', 'Cfa017359' => 'cfa', 'Ciclev10005687m.g' => 'ccl', 'Ciclev10012173m.g' => 'ccl', 'Ciclev10021621m.g' => 'ccl', 'Ciclev10028968m.g' => 'ccl', 'Ciclev10029907m.g' => 'ccl', 'CiPaw.01G164800' => 'cil', 'CiPaw.07G083700' => 'cil', 'CiPaw.07G127000' => 'cil', 'CiPaw.07G136900' => 'cil', 'CiPaw.08G081700' => 'cil', 'CiPaw.09G194600' => 'cil', 'CiPaw.10G146500' => 'cil', 'CiPaw.13G091500' => 'cil', 'CiPaw.13G091600' => 'cil', 'ClCG00G003390' => 'cla', 'ClCG01G007220' => 'cla', 'ClCG03G001370' => 'cla', 'ClCG04G008100' => 'cla', 'ClCG06G006110' => 'cla', 'ClCG06G006130' => 'cla', 'ClCG10G021210' => 'cla', 'COL.COLO4_07648' => 'col', 'COL.COLO4_07650' => 'col', 'COL.COLO4_07651' => 'col', 'COL.COLO4_14780' => 'col', 'COL.COLO4_18546' => 'col', 'COL.COLO4_18547' => 'col', 'COL.COLO4_23103' => 'col', 'COL.COLO4_30419' => 'col', 'COL.COLO4_34232' => 'col', 'Cpa.g.sc169.20' => 'cpa', 'Cpa.g.sc57.45' => 'cpa', 'Cpa.g.sc58.124' => 'cpa', 'Cpa.g.sc58.125' => 'cpa', 'Cpa.g.sc81.118' => 'cpa', 'Cpa.g.sc81.119' => 'cpa', 'Cre12.g524700' => 'cre', 'CsaV3_1G034430' => 'csa', 'CsaV3_1G034440' => 'csa', 'CsaV3_1G034450' => 'csa', 'CsaV3_3G034830' => 'csa', 'CsaV3_4G025090' => 'csa', 'CsaV3_5G018660' => 'csa', 'CsaV3_6G038160' => 'csa', 'CSS0003447' => 'camsi', 'CSS0017840' => 'camsi', 'CSS0019260' => 'camsi', 'CSS0040375' => 'camsi', 'CSS0042533' => 'camsi', 'DCAR_005960' => 'dca', 'DCAR_012104' => 'dca', 'DCAR_012105' => 'dca', 'DCAR_012293' => 'dca', 'DCAR_015632' => 'dca', 'DCAR_024602' => 'dca', 'DCAR_028752' => 'dca', 'Dinv06261' => 'din', 'Dinv13982' => 'din', 'Dinv17029' => 'din', 'Dinv18463' => 'din', 'Dinv33181' => 'din', 'Dinv35585' => 'din', 'Dinv37161' => 'din', 'Dinv42977' => 'din', 'Dinv43122' => 'din', 'Dinv44517' => 'din', 'Duzib093G0256' => 'dzi', 'Duzib106G1254' => 'dzi', 'Duzib128G1789' => 'dzi', 'Duzib133G0633' => 'dzi', 'Duzib138G0510' => 'dzi', 'Duzib150G1084' => 'dzi', 'Duzib168G0488' => 'dzi', 'Duzib168G1523' => 'dzi', 'Duzib170G0133' => 'dzi', 'ECA234G1433' => 'eca', 'ECA236G1432' => 'eca', 'ECA236G2256' => 'eca', 'ECA236G2365' => 'eca', 'ECA236G4830' => 'eca', 'ECA248G1505' => 'eca', 'EL10Ac3g06431' => 'bvu', 'EL10Ac5g12577' => 'bvu', 'EL10Ac6g13533' => 'bvu', 'EL10Ac7g16045' => 'bvu', 'Eucgr.A01281' => 'egr', 'Eucgr.B02326' => 'egr', 'Eucgr.H03532' => 'egr', 'Eucgr.K00553' => 'egr', 'Eucgr.K03116' => 'egr', 'FAN02G3963' => 'fan', 'FAN05G0438' => 'fan', 'FAN09G2434' => 'fan', 'FAN12G3984' => 'fan', 'FAN14G0798' => 'fan', 'FAN17G0652' => 'fan', 'FAN19G1988' => 'fan', 'FAN22G0632' => 'fan', 'FAN23G0387' => 'fan', 'FAN26G1323' => 'fan', 'FAN28G0666' => 'fan', 'FvH4_1g26080' => 'fve', 'FvH4_3g36780' => 'fve', 'FvH4_4g15270' => 'fve', 'FvH4_6g13490' => 'fve', 'Glyma.01G098700' => 'gma', 'Glyma.03G065900' => 'gma', 'Glyma.03G073754' => 'gma', 'Glyma.03G073758' => 'gma', 'Glyma.03G083200' => 'gma', 'Glyma.03G225500' => 'gma', 'Glyma.05G037766' => 'gma', 'Glyma.07G133500' => 'gma', 'Glyma.10G139400' => 'gma', 'Glyma.10G248900' => 'gma', 'Glyma.11G137800' => 'gma', 'Glyma.12G061300' => 'gma', 'Glyma.13G337900' => 'gma', 'Glyma.15G036600' => 'gma', 'Glyma.18G182800' => 'gma', 'Glyma.19G222500' => 'gma', 'Glyma.20G144800' => 'gma', 'Gohir.A01G222000' => 'ghi', 'Gohir.A03G044000' => 'ghi', 'Gohir.A03G044100' => 'ghi', 'Gohir.A04G083100' => 'ghi', 'Gohir.A07G127200' => 'ghi', 'Gohir.A07G132400' => 'ghi', 'Gohir.A08G000700' => 'ghi', 'Gohir.A11G327300' => 'ghi', 'Gohir.D01G211500' => 'ghi', 'Gohir.D03G123400' => 'ghi', 'Gohir.D03G123500' => 'ghi', 'Gohir.D04G121800' => 'ghi', 'Gohir.D07G131500' => 'ghi', 'Gohir.D07G136600' => 'ghi', 'Gohir.D08G011600' => 'ghi', 'Gohir.D11G346200' => 'ghi', 'Gorai.001G142800' => 'gra', 'Gorai.001G148700' => 'gra', 'Gorai.002G257300' => 'gra', 'Gorai.003G130000' => 'gra', 'Gorai.003G130100' => 'gra', 'Gorai.004G005300' => 'gra', 'Gorai.007G376500' => 'gra', 'Gorai.012G104700' => 'gra', 'GSVIVG01017946001' => 'vvi', 'GSVIVG01024928001' => 'vvi', 'GSVIVG01028227001' => 'vvi', 'GSVIVG01034151001' => 'vvi', 'HanXRQChr05g0135031' => 'han', 'HanXRQChr05g0135041' => 'han', 'HanXRQChr05g0140021' => 'han', 'HanXRQChr06g0178981' => 'han', 'HanXRQChr07g0188251' => 'han', 'HanXRQChr08g0235311' => 'han', 'HanXRQChr09g0271011' => 'han', 'HanXRQChr10g0293321' => 'han', 'HanXRQChr13g0388171' => 'han', 'Haze_00916' => 'cav', 'Haze_05063' => 'cav', 'Haze_20814' => 'cav', 'Haze_24128' => 'cav', 'Hma1.2p1_0745F.1_g212010' => 'hma', 'Hma1.2p1_0757F.1_g213260' => 'hma', 'Hma1.2p1_0936F.1_g238840' => 'hma', 'Hma1.2p1_1735F.1_g299890' => 'hma', 'Hma1.2p1_1861F.1_g305685' => 'hma', 'HPP92_003397' => 'vpl', 'HPP92_012597' => 'vpl', 'HPP92_015520' => 'vpl', 'HPP92_015539' => 'vpl', 'HPP92_020373' => 'vpl', 'Hund04938' => 'sun', 'Hund10677' => 'sun', 'Hund11033' => 'sun', 'Hund12155' => 'sun', 'Lalb_Chr01g0022551' => 'lal', 'Lalb_Chr03g0042341' => 'lal', 'Lalb_Chr07g0192931' => 'lal', 'Lalb_Chr12g0209551' => 'lal', 'Lalb_Chr19g0125251' => 'lal', 'Lalb_Chr19g0137891' => 'lal', 'Lalb_Chr21g0304641' => 'lal', 'Lalb_Chr21g0309881' => 'lal', 'Lj1A5T12' => 'lonja', 'Lj1C148G10' => 'lonja', 'Lj2A93T83' => 'lonja', 'Lj3A738G68' => 'lonja', 'Lj3C966T1' => 'lonja', 'Lj3g0018958' => 'lja', 'Lj3g0021831' => 'lja', 'Lj3g0025443' => 'lja', 'Lj4g0026809' => 'lja', 'Lj5g0012558' => 'lja', 'Lj5g0021586' => 'lja', 'Lsat_1_v5_gn_5_156840' => 'lsa', 'Lsat_1_v5_gn_8_73460' => 'lsa', 'Lsat_1_v5_gn_8_73481' => 'lsa', 'Lsat_1_v5_gn_9_31601' => 'lsa', 'Lsat_1_v5_gn_9_77320' => 'lsa', 'Manes.01G171300' => 'mes', 'Manes.01G171400' => 'mes', 'Manes.01G236100' => 'mes', 'Manes.02G130500' => 'mes', 'Manes.02G130600' => 'mes', 'Manes.03G180200' => 'mes', 'Manes.05G007000' => 'mes', 'Manes.08G084400' => 'mes', 'Manes.09G092600' => 'mes', 'Manes.15G027900' => 'mes', 'MBI04_g40948_MAGBIO' => 'mbi', 'MBI14_g12123_MAGBIO' => 'mbi', 'MBI18_g28915_MAGBIO' => 'mbi', 'MCO09G053' => 'mco', 'MCO11G782' => 'mco', 'MCO15G215' => 'mco', 'MD03G1088500' => 'mdo', 'MD03G1088600' => 'mdo', 'MD04G1130800' => 'mdo', 'MD09G1291700' => 'mdo', 'MD11G1097500' => 'mdo', 'MD11G1097600' => 'mdo', 'MD12G1143900' => 'mdo', 'MD13G1191400' => 'mdo', 'MD16G1191500' => 'mdo', 'Medtr1g085570' => 'mtr', 'Medtr1g104610' => 'mtr', 'Medtr2g097520' => 'mtr', 'Medtr4g021800' => 'mtr', 'Medtr4g021825' => 'mtr', 'Medtr4g064270' => 'mtr', 'Medtr4g064380' => 'mtr', 'Medtr7g062150' => 'mtr', 'MELO3C003138.2' => 'cme', 'MELO3C005187.2' => 'cme', 'MELO3C009252.2' => 'cme', 'MELO3C014481.2' => 'cme', 'MELO3C020616.2' => 'cme', 'MELO3C020617.2' => 'cme', 'MELO3C020618.2' => 'cme', 'Migut.G00328' => 'egut', 'Migut.J00320' => 'egut', 'Migut.L01000' => 'egut', 'Migut.L01953' => 'egut', 'MSTRG.10253' => 'ama', 'MSTRG.19077' => 'ama', 'MSTRG.26780' => 'ama', 'MSTRG.4023' => 'ama', 'MSTRG.5655' => 'ama', 'MSTRG.9992' => 'ama', 'Nitab4.5_0000043g0310' => 'nta', 'Nitab4.5_0000463g0080' => 'nta', 'Nitab4.5_0000705g0170' => 'nta', 'Nitab4.5_0001326g0060' => 'nta', 'Nitab4.5_0001628g0030' => 'nta', 'Nitab4.5_0002103g0110' => 'nta', 'Nitab4.5_0002946g0030' => 'nta', 'Nitab4.5_0004639g0030' => 'nta', 'Nn2g11149' => 'nnu', 'Nn2g13389' => 'nnu', 'Nn4g25326' => 'nnu', 'Nn4g26290' => 'nnu', 'Nn5g29865' => 'nnu', 'Oeu004163.1' => 'oeu', 'Oeu006901.1' => 'oeu', 'Oeu010096.1' => 'oeu', 'Oeu024340.1' => 'oeu', 'Oeu048369.1' => 'oeu', 'Os01g0973000' => 'osa', 'Os03g0273800' => 'osa', 'Os03g0701200' => 'osa', 'Os03g0834050' => 'osa', 'Os07g0634400' => 'osa', 'Peaxi162Scf00092g01414' => 'pax', 'Peaxi162Scf00165g00818' => 'pax', 'Peaxi162Scf00309g00516' => 'pax', 'Peaxi162Scf00774g00218' => 'pax', 'PGR004G1824' => 'pgr', 'PGR004G2606' => 'pgr', 'PGR031G2716' => 'pgr', 'PGR102G2460' => 'pgr', 'PGR142G2599' => 'pgr', 'PGSC0003DMG400000843' => 'stu', 'PGSC0003DMG400008829' => 'stu', 'PGSC0003DMG400030418' => 'stu', 'PGSC0003DMG400031834' => 'stu', 'PGSC0003DMG401028300' => 'stu', 'PGSC0003DMG402028300' => 'stu', 'Phvul.001G219300' => 'pvu', 'Phvul.007G056000' => 'pvu', 'Phvul.007G208000' => 'pvu', 'Phvul.008G119500' => 'pvu', 'Phvul.010G011200' => 'pvu', 'Phvul.010G014800' => 'pvu', 'Phvul.011G062900' => 'pvu', 'Phvul.L007043' => 'pvu', 'Potri.001G242300' => 'ptr', 'Potri.002G185300' => 'ptr', 'Potri.006G086900' => 'ptr', 'Potri.008G151700' => 'ptr', 'Potri.009G033500' => 'ptr', 'Potri.010G089300' => 'ptr', 'Potri.014G110800' => 'ptr', 'Pp3c27_8130' => 'ppa', 'Pp3c6_27410' => 'ppa', 'PRCOL_00001659' => 'pco', 'PRCOL_00001927' => 'pco', 'PRCOL_00003649' => 'pco', 'Prupe.1G011600' => 'ppe', 'Prupe.3G000800' => 'ppe', 'Prupe.3G001100' => 'ppe', 'Prupe.6G072700' => 'ppe', 'Prupe.6G072800' => 'ppe', 'Prupe.6G257300' => 'ppe', 'Prupe.8G033000' => 'ppe', 'Psat0s2633g0080' => 'psa', 'Psat0s3396g0080' => 'psa', 'Psat0s3396g0200' => 'psa', 'Psat3g139080' => 'psa', 'Psat5g285080' => 'psa', 'Psat6g157760' => 'psa', 'Psat6g208440' => 'psa', 'Psat7g215320' => 'psa', 'Psat7g215400' => 'psa', 'Psat7g235600' => 'psa', 'Psat7g235760' => 'psa', 'PSO063G4603' => 'pso', 'PSO210G0182' => 'pso', 'PSO210G0196' => 'pso', 'PSO339G0394' => 'pso', 'PSO339G4127' => 'pso', 'PSO513G0064' => 'pso', 'PSO761G0079' => 'pso', 'QL01p031003' => 'qlo', 'QL01p031078' => 'qlo', 'QL06p003004' => 'qlo', 'QL07p048731' => 'qlo', 'QL09p037427' => 'qlo', 'RcHm_v2.0_Chr3g0466361' => 'rch', 'RcHm_v2.0_Chr3g0485571' => 'rch', 'RcHm_v2.0_Chr4g0416551' => 'rch', 'RcHm_v2.0_Chr5g0065831' => 'rch', 'Rhsim01G0230500' => 'rsi', 'Rhsim05G0194000' => 'rsi', 'Rhsim08G0250400' => 'rsi', 'Sabra02G0131000' => 'sbr', 'Sabra06G0066300' => 'sbr', 'Sabra08G0115500' => 'sbr', 'Sabra09G0023900' => 'sbr', 'Sabra10G0054000' => 'sbr', 'Sabra14G0081500' => 'sbr', 'Sabra16G0147100' => 'sbr', 'SalBow2G2957' => 'sbo', 'SalBow4G3320' => 'sbo', 'SalBow8G1894' => 'sbo', 'Sc07g0007950' => 'sci', 'Sc12g0001360' => 'sci', 'Sc13g0004330' => 'sci', 'Sc20g0005010' => 'sci', 'Sed0000361' => 'sed', 'Sed0001706' => 'sed', 'Sed0002422' => 'sed', 'Sed0004029' => 'sed', 'Sed0004602' => 'sed', 'Sed0004943' => 'sed', 'Sed0008646' => 'sed', 'Sed0023313' => 'sed', 'Sed0024843' => 'sed', 'SEGI_00081' => 'sgi', 'SEGI_00947' => 'sgi', 'SEGI_04046' => 'sgi', 'SEGI_06880' => 'sgi', 'SEGI_09736' => 'sgi', 'SEGI_12741' => 'sgi', 'SEGI_14530' => 'sgi', 'SEGI_20705' => 'sgi', 'SEGI_26088' => 'sgi', 'SEGI_28323' => 'sgi', 'SEGI_33343' => 'sgi', 'SGA_v2.0_scaffold126G33775' => 'sas', 'SGA_v2.0_scaffold2G01337' => 'sas', 'SGA_v2.0_scaffold38G15006' => 'sas', 'SGA_v2.0_scaffold39G15264' => 'sas', 'SGA_v2.0_scaffold453G51880' => 'sas', 'SHI12696' => 'shi', 'SMO367G1096' => 'smo', 'Solyc01g068630.3' => 'sly', 'Solyc05g011880.3' => 'sly', 'Solyc06g076300.3' => 'sly', 'Solyc09g010940.4' => 'sly', 'Solyc09g075890.3' => 'sly', 'Sopen01g030560' => 'spe', 'Sopen05g006630' => 'spe', 'Sopen06g032720' => 'spe', 'Sopen09g005660' => 'spe', 'Sopen09g030690' => 'spe', 'Sp4g14540' => 'spa', 'Sp4g20030' => 'spa', 'Sp5g01320' => 'spa', 'Sp6g21170' => 'spa', 'Sp6g21180' => 'spa', 'Sp6g21190' => 'spa', 'Sp6g40220' => 'spa', 'TAR362G0122' => 'tar', 'TAR362G1338' => 'tar', 'TAR369G0590' => 'tar', 'TAR371G0824' => 'tar', 'TAR622G1429' => 'tar', 'TAR623G0734' => 'tar', 'TAR625G0441' => 'tar', 'TAR629G0976' => 'tar', 'TAR633G1195' => 'tar', 'TAR636G2660' => 'tar', 'THA.LOC104799440' => 'tha', 'THA.LOC104800966' => 'tha', 'THA.LOC104806559' => 'tha', 'THA.LOC104810765' => 'tha', 'THA.LOC104816266' => 'tha', 'THA.LOC104817419' => 'tha', 'THA.LOC104827021' => 'tha', 'Thecc.01G327400' => 'tca', 'Thecc.04G229200' => 'tca', 'Thecc.05G037400' => 'tca', 'Thecc.09G318600' => 'tca', 'Thecc.09G318700' => 'tca', 'Thhalv10006238m.g' => 'esa', 'Thhalv10014321m.g' => 'esa', 'Thhalv10014335m.g' => 'esa', 'Thhalv10015826m.g' => 'esa', 'Thhalv10017107m.g' => 'esa', 'Thhalv10017180m.g' => 'esa', 'Thhalv10029339m.g' => 'esa', 'TPR.G1699' => 'tpr', 'TPR.G23609' => 'tpr', 'TPR.G3081' => 'tpr', 'TPR.G40397' => 'tpr', 'TPR.G5522' => 'tpr', 'TPR.G5618' => 'tpr', 'TPR.G5626' => 'tpr', 'TWI09G1632' => 'twi', 'TWI23G1230' => 'twi', 'TWI53G1064' => 'twi', 'TWI59G0751' => 'twi', 'TWI74G0947' => 'twi', 'TWI77G0337' => 'twi', 'TWI79G1254' => 'twi', 'unitig_0.g2341' => 'ugi', 'unitig_26.g10006' => 'ugi', 'unitig_26.g10008' => 'ugi', 'unitig_26.g9192' => 'ugi', 'vmacro14547' => 'vma', 'vmacro15333' => 'vma', 'vmacro18743' => 'vma', 'vmacro20166' => 'vma', 'VMungo0331G0523' => 'vmu', 'VMungo0331G1202' => 'vmu', 'VMungo0720G1228' => 'vmu', 'VMungo0720G1514' => 'vmu', 'VMungo1080G0169' => 'vmu', 'VMungo1127G1475' => 'vmu', 'VMungo1383G1208' => 'vmu', 'VMungo1383G1698' => 'vmu', 'Zm00001eb012270' => 'zma', 'Zm00001eb054100' => 'zma', 'Zm00001eb063350' => 'zma', 'Zm00001eb328560' => 'zma', 'Zm00001eb342820' => 'zma', 'Zm00001eb362210' => 'zma', 'Zm00001eb397730' => 'zma', 'Zm00001eb399750' => 'zma' ) $gf_id = 'HOM05D000959' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000959' ) $data_identifier = 'HOM05D000959' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 5, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 5, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 10, 'mbi' => (int) 3, 'mco' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 2, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 3, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 11, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399750' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000959', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '622', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p07100' => 'bna', 'A03p11720' => 'bna', 'A05p08300' => 'bna', 'A05p13380' => 'bna', 'A09p54130' => 'bna', 'A10p16690' => 'bna', 'A10p16700' => 'bna', 'A10p33390' => 'bna', 'Aa31LG10G16020' => 'aar', 'Aa31LG1G11810' => 'aar', 'Aa31LG1G11830' => 'aar', 'Aa31LG1G22510' => 'aar', 'Aa31LG5G4890' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5793' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2310' => 'aag', 'Actinidia08499' => 'ach', 'Actinidia11262' => 'ach', 'Actinidia23926' => 'ach', 'Actinidia34420' => 'ach', 'Actinidia36970' => 'ach', 'Ah.02g111220' => 'amhyb', 'Ah.15g097750' => 'amhyb', 'AL4G27500' => 'aly', 'AL6G11470' => 'aly', 'AL8G35950' => 'aly', 'AL8G35960' => 'aly', 'AL8G35970' => 'aly', 'Aqoxy1G00912' => 'aox', 'Aqoxy2G02253' => 'aox', 'Aqoxy2G02411' => 'aox', 'Aqoxy5G00485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BZ66YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K8ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM4FUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6BF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HFV7XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25JBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0YNNV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MAKK6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P70IT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP2Z6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V61LZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YWP64R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3S9AI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7PGHH' => 'arhy', 'AT2G32150' => 'ath', 'AT3G62040' => 'ath', 'AT5G02230' => 'ath', 'AT5G59480' => 'ath', 'AT5G59490' => 'ath', 'ATR0332G060' => 'atr', 'ATR0559G190' => 'atr', 'ATR0693G294' => 'atr', 'Atru.chr3.3975' => 'acertr', 'Atru.chr3.3976' => 'acertr', 'Atru.chr3.3977' => 'acertr', 'Atru.chr4.2498' => 'acertr', 'Atru.chr5.838' => 'acertr', 'Atru.chr8.1990' => 'acertr', 'Atru.chr8.1991' => 'acertr', 'Atru.chr8.1992' => 'acertr', 'AUR62001759' => 'cqu', 'AUR62009545' => 'cqu', 'AUR62010474' => 'cqu', 'AUR62025820' => 'cqu', 'AUR62030422' => 'cqu', 'AUR62033605' => 'cqu', 'AUR62038615' => 'cqu', 'AUR62041347' => 'cqu', 'BcaB01g04574' => 'bca', 'BcaB02g09263' => 'bca', 'BcaB02g10453' => 'bca', 'BcaB05g22513' => 'bca', 'BcaB08g36253' => 'bca', 'BcaB08g36254' => 'bca', 'BcaC01g06519' => 'bca', 'BcaC02g11889' => 'bca', 'BcaC03g14010' => 'bca', 'BcaC03g18439' => 'bca', 'BcaC04g19765' => 'bca', 'BcaC09g48432' => 'bca', 'BcaNung07302' => 'bca', 'BolC2t06040H' => 'bol', 'BolC2t07346H' => 'bol', 'BolC3t13817H' => 'bol', 'BolC4t22625H' => 'bol', 'BolC4t23297H' => 'bol', 'BolC8t51278H' => 'bol', 'BolC9t58050H' => 'bol', 'BolC9t58051H' => 'bol', 'BolC9t60163H' => 'bol', 'BraA02t04712Z' => 'bra', 'BraA02t05791Z' => 'bra', 'BraA03t10483Z' => 'bra', 'BraA05t19795Z' => 'bra', 'BraA05t20276Z' => 'bra', 'BraA09t40827Z' => 'bra', 'BraA10t43750Z' => 'bra', 'BraA10t43751Z' => 'bra', 'BraA10t45370Z' => 'bra', 'C02p00400' => 'bna', 'C02p12460' => 'bna', 'C03p13680' => 'bna', 'C04p10270' => 'bna', 'C04p17500' => 'bna', 'C08p37010' => 'bna', 'C09p51880' => 'bna', 'C09p51890' => 'bna', 'C09p74300' => 'bna', 'CAN.G179.26' => 'can', 'CAN.G3384.1' => 'can', 'CAN.G394.68' => 'can', 'CAN.G907.13' => 'can', 'CANSAT11G0012' => 'cansat', 'CANSAT25G1586' => 'cansat', 'CANSAT35G0735' => 'cansat', 'CANSAT54G0556' => 'cansat', 'CANSAT64G0356' => 'cansat', 'CANSAT78G2042' => 'cansat', 'CARHR125920' => 'chi', 'CARHR131910' => 'chi', 'CARHR172390' => 'chi', 'CARHR211140' => 'chi', 'CARHR285850' => 'chi', 'CARHR285860' => 'chi', 'Carub.0004s1347' => 'cru', 'Carub.0004s1960' => 'cru', 'Carub.0005s2880' => 'cru', 'Carub.0006s0107' => 'cru', 'Carub.0008s2015' => 'cru', 'Carub.0008s2016' => 'cru', 'Carub.0008s2017' => 'cru', 'Ca_01315_v3' => 'car', 'Ca_05063_v3' => 'car', 'Ca_10231_v3' => 'car', 'Ca_10913_v3' => 'car', 'Ca_19156_v3' => 'car', 'Ca_23644_v3' => 'car', 'Ca_26735_v3' => 'car', 'Cc01_g13130' => 'ccan', 'Cc02_g21690' => 'ccan', 'Cc03_g03600' => 'ccan', 'Cc06_g02510' => 'ccan', 'CDE02G1265' => 'cde', 'CDE05G0415' => 'cde', 'CDE08G1082' => 'cde', 'Cfa005780' => 'cfa', 'Cfa011522' => 'cfa', 'Cfa011523' => 'cfa', 'Cfa015627' => 'cfa', 'Cfa017359' => 'cfa', 'Ciclev10005687m.g' => 'ccl', 'Ciclev10012173m.g' => 'ccl', 'Ciclev10021621m.g' => 'ccl', 'Ciclev10028968m.g' => 'ccl', 'Ciclev10029907m.g' => 'ccl', 'CiPaw.01G164800' => 'cil', 'CiPaw.07G083700' => 'cil', 'CiPaw.07G127000' => 'cil', 'CiPaw.07G136900' => 'cil', 'CiPaw.08G081700' => 'cil', 'CiPaw.09G194600' => 'cil', 'CiPaw.10G146500' => 'cil', 'CiPaw.13G091500' => 'cil', 'CiPaw.13G091600' => 'cil', 'ClCG00G003390' => 'cla', 'ClCG01G007220' => 'cla', 'ClCG03G001370' => 'cla', 'ClCG04G008100' => 'cla', 'ClCG06G006110' => 'cla', 'ClCG06G006130' => 'cla', 'ClCG10G021210' => 'cla', 'COL.COLO4_07648' => 'col', 'COL.COLO4_07650' => 'col', 'COL.COLO4_07651' => 'col', 'COL.COLO4_14780' => 'col', 'COL.COLO4_18546' => 'col', 'COL.COLO4_18547' => 'col', 'COL.COLO4_23103' => 'col', 'COL.COLO4_30419' => 'col', 'COL.COLO4_34232' => 'col', 'Cpa.g.sc169.20' => 'cpa', 'Cpa.g.sc57.45' => 'cpa', 'Cpa.g.sc58.124' => 'cpa', 'Cpa.g.sc58.125' => 'cpa', 'Cpa.g.sc81.118' => 'cpa', 'Cpa.g.sc81.119' => 'cpa', 'Cre12.g524700' => 'cre', 'CsaV3_1G034430' => 'csa', 'CsaV3_1G034440' => 'csa', 'CsaV3_1G034450' => 'csa', 'CsaV3_3G034830' => 'csa', 'CsaV3_4G025090' => 'csa', 'CsaV3_5G018660' => 'csa', 'CsaV3_6G038160' => 'csa', 'CSS0003447' => 'camsi', 'CSS0017840' => 'camsi', 'CSS0019260' => 'camsi', 'CSS0040375' => 'camsi', 'CSS0042533' => 'camsi', 'DCAR_005960' => 'dca', 'DCAR_012104' => 'dca', 'DCAR_012105' => 'dca', 'DCAR_012293' => 'dca', 'DCAR_015632' => 'dca', 'DCAR_024602' => 'dca', 'DCAR_028752' => 'dca', 'Dinv06261' => 'din', 'Dinv13982' => 'din', 'Dinv17029' => 'din', 'Dinv18463' => 'din', 'Dinv33181' => 'din', 'Dinv35585' => 'din', 'Dinv37161' => 'din', 'Dinv42977' => 'din', 'Dinv43122' => 'din', 'Dinv44517' => 'din', 'Duzib093G0256' => 'dzi', 'Duzib106G1254' => 'dzi', 'Duzib128G1789' => 'dzi', 'Duzib133G0633' => 'dzi', 'Duzib138G0510' => 'dzi', 'Duzib150G1084' => 'dzi', 'Duzib168G0488' => 'dzi', 'Duzib168G1523' => 'dzi', 'Duzib170G0133' => 'dzi', 'ECA234G1433' => 'eca', 'ECA236G1432' => 'eca', 'ECA236G2256' => 'eca', 'ECA236G2365' => 'eca', 'ECA236G4830' => 'eca', 'ECA248G1505' => 'eca', 'EL10Ac3g06431' => 'bvu', 'EL10Ac5g12577' => 'bvu', 'EL10Ac6g13533' => 'bvu', 'EL10Ac7g16045' => 'bvu', 'Eucgr.A01281' => 'egr', 'Eucgr.B02326' => 'egr', 'Eucgr.H03532' => 'egr', 'Eucgr.K00553' => 'egr', 'Eucgr.K03116' => 'egr', 'FAN02G3963' => 'fan', 'FAN05G0438' => 'fan', 'FAN09G2434' => 'fan', 'FAN12G3984' => 'fan', 'FAN14G0798' => 'fan', 'FAN17G0652' => 'fan', 'FAN19G1988' => 'fan', 'FAN22G0632' => 'fan', 'FAN23G0387' => 'fan', 'FAN26G1323' => 'fan', 'FAN28G0666' => 'fan', 'FvH4_1g26080' => 'fve', 'FvH4_3g36780' => 'fve', 'FvH4_4g15270' => 'fve', 'FvH4_6g13490' => 'fve', 'Glyma.01G098700' => 'gma', 'Glyma.03G065900' => 'gma', 'Glyma.03G073754' => 'gma', 'Glyma.03G073758' => 'gma', 'Glyma.03G083200' => 'gma', 'Glyma.03G225500' => 'gma', 'Glyma.05G037766' => 'gma', 'Glyma.07G133500' => 'gma', 'Glyma.10G139400' => 'gma', 'Glyma.10G248900' => 'gma', 'Glyma.11G137800' => 'gma', 'Glyma.12G061300' => 'gma', 'Glyma.13G337900' => 'gma', 'Glyma.15G036600' => 'gma', 'Glyma.18G182800' => 'gma', 'Glyma.19G222500' => 'gma', 'Glyma.20G144800' => 'gma', 'Gohir.A01G222000' => 'ghi', 'Gohir.A03G044000' => 'ghi', 'Gohir.A03G044100' => 'ghi', 'Gohir.A04G083100' => 'ghi', 'Gohir.A07G127200' => 'ghi', 'Gohir.A07G132400' => 'ghi', 'Gohir.A08G000700' => 'ghi', 'Gohir.A11G327300' => 'ghi', 'Gohir.D01G211500' => 'ghi', 'Gohir.D03G123400' => 'ghi', 'Gohir.D03G123500' => 'ghi', 'Gohir.D04G121800' => 'ghi', 'Gohir.D07G131500' => 'ghi', 'Gohir.D07G136600' => 'ghi', 'Gohir.D08G011600' => 'ghi', 'Gohir.D11G346200' => 'ghi', 'Gorai.001G142800' => 'gra', 'Gorai.001G148700' => 'gra', 'Gorai.002G257300' => 'gra', 'Gorai.003G130000' => 'gra', 'Gorai.003G130100' => 'gra', 'Gorai.004G005300' => 'gra', 'Gorai.007G376500' => 'gra', 'Gorai.012G104700' => 'gra', 'GSVIVG01017946001' => 'vvi', 'GSVIVG01024928001' => 'vvi', 'GSVIVG01028227001' => 'vvi', 'GSVIVG01034151001' => 'vvi', 'HanXRQChr05g0135031' => 'han', 'HanXRQChr05g0135041' => 'han', 'HanXRQChr05g0140021' => 'han', 'HanXRQChr06g0178981' => 'han', 'HanXRQChr07g0188251' => 'han', 'HanXRQChr08g0235311' => 'han', 'HanXRQChr09g0271011' => 'han', 'HanXRQChr10g0293321' => 'han', 'HanXRQChr13g0388171' => 'han', 'Haze_00916' => 'cav', 'Haze_05063' => 'cav', 'Haze_20814' => 'cav', 'Haze_24128' => 'cav', 'Hma1.2p1_0745F.1_g212010' => 'hma', 'Hma1.2p1_0757F.1_g213260' => 'hma', 'Hma1.2p1_0936F.1_g238840' => 'hma', 'Hma1.2p1_1735F.1_g299890' => 'hma', 'Hma1.2p1_1861F.1_g305685' => 'hma', 'HPP92_003397' => 'vpl', 'HPP92_012597' => 'vpl', 'HPP92_015520' => 'vpl', 'HPP92_015539' => 'vpl', 'HPP92_020373' => 'vpl', 'Hund04938' => 'sun', 'Hund10677' => 'sun', 'Hund11033' => 'sun', 'Hund12155' => 'sun', 'Lalb_Chr01g0022551' => 'lal', 'Lalb_Chr03g0042341' => 'lal', 'Lalb_Chr07g0192931' => 'lal', 'Lalb_Chr12g0209551' => 'lal', 'Lalb_Chr19g0125251' => 'lal', 'Lalb_Chr19g0137891' => 'lal', 'Lalb_Chr21g0304641' => 'lal', 'Lalb_Chr21g0309881' => 'lal', 'Lj1A5T12' => 'lonja', 'Lj1C148G10' => 'lonja', 'Lj2A93T83' => 'lonja', 'Lj3A738G68' => 'lonja', 'Lj3C966T1' => 'lonja', 'Lj3g0018958' => 'lja', 'Lj3g0021831' => 'lja', 'Lj3g0025443' => 'lja', 'Lj4g0026809' => 'lja', 'Lj5g0012558' => 'lja', 'Lj5g0021586' => 'lja', 'Lsat_1_v5_gn_5_156840' => 'lsa', 'Lsat_1_v5_gn_8_73460' => 'lsa', 'Lsat_1_v5_gn_8_73481' => 'lsa', 'Lsat_1_v5_gn_9_31601' => 'lsa', 'Lsat_1_v5_gn_9_77320' => 'lsa', 'Manes.01G171300' => 'mes', 'Manes.01G171400' => 'mes', 'Manes.01G236100' => 'mes', 'Manes.02G130500' => 'mes', 'Manes.02G130600' => 'mes', 'Manes.03G180200' => 'mes', 'Manes.05G007000' => 'mes', 'Manes.08G084400' => 'mes', 'Manes.09G092600' => 'mes', 'Manes.15G027900' => 'mes', 'MBI04_g40948_MAGBIO' => 'mbi', 'MBI14_g12123_MAGBIO' => 'mbi', 'MBI18_g28915_MAGBIO' => 'mbi', 'MCO09G053' => 'mco', 'MCO11G782' => 'mco', 'MCO15G215' => 'mco', 'MD03G1088500' => 'mdo', 'MD03G1088600' => 'mdo', 'MD04G1130800' => 'mdo', 'MD09G1291700' => 'mdo', 'MD11G1097500' => 'mdo', 'MD11G1097600' => 'mdo', 'MD12G1143900' => 'mdo', 'MD13G1191400' => 'mdo', 'MD16G1191500' => 'mdo', 'Medtr1g085570' => 'mtr', 'Medtr1g104610' => 'mtr', 'Medtr2g097520' => 'mtr', 'Medtr4g021800' => 'mtr', 'Medtr4g021825' => 'mtr', 'Medtr4g064270' => 'mtr', 'Medtr4g064380' => 'mtr', 'Medtr7g062150' => 'mtr', 'MELO3C003138.2' => 'cme', 'MELO3C005187.2' => 'cme', 'MELO3C009252.2' => 'cme', 'MELO3C014481.2' => 'cme', 'MELO3C020616.2' => 'cme', 'MELO3C020617.2' => 'cme', 'MELO3C020618.2' => 'cme', 'Migut.G00328' => 'egut', 'Migut.J00320' => 'egut', 'Migut.L01000' => 'egut', 'Migut.L01953' => 'egut', 'MSTRG.10253' => 'ama', 'MSTRG.19077' => 'ama', 'MSTRG.26780' => 'ama', 'MSTRG.4023' => 'ama', 'MSTRG.5655' => 'ama', 'MSTRG.9992' => 'ama', 'Nitab4.5_0000043g0310' => 'nta', 'Nitab4.5_0000463g0080' => 'nta', 'Nitab4.5_0000705g0170' => 'nta', 'Nitab4.5_0001326g0060' => 'nta', 'Nitab4.5_0001628g0030' => 'nta', 'Nitab4.5_0002103g0110' => 'nta', 'Nitab4.5_0002946g0030' => 'nta', 'Nitab4.5_0004639g0030' => 'nta', 'Nn2g11149' => 'nnu', 'Nn2g13389' => 'nnu', 'Nn4g25326' => 'nnu', 'Nn4g26290' => 'nnu', 'Nn5g29865' => 'nnu', 'Oeu004163.1' => 'oeu', 'Oeu006901.1' => 'oeu', 'Oeu010096.1' => 'oeu', 'Oeu024340.1' => 'oeu', 'Oeu048369.1' => 'oeu', 'Os01g0973000' => 'osa', 'Os03g0273800' => 'osa', 'Os03g0701200' => 'osa', 'Os03g0834050' => 'osa', 'Os07g0634400' => 'osa', 'Peaxi162Scf00092g01414' => 'pax', 'Peaxi162Scf00165g00818' => 'pax', 'Peaxi162Scf00309g00516' => 'pax', 'Peaxi162Scf00774g00218' => 'pax', 'PGR004G1824' => 'pgr', 'PGR004G2606' => 'pgr', 'PGR031G2716' => 'pgr', 'PGR102G2460' => 'pgr', 'PGR142G2599' => 'pgr', 'PGSC0003DMG400000843' => 'stu', 'PGSC0003DMG400008829' => 'stu', 'PGSC0003DMG400030418' => 'stu', 'PGSC0003DMG400031834' => 'stu', 'PGSC0003DMG401028300' => 'stu', 'PGSC0003DMG402028300' => 'stu', 'Phvul.001G219300' => 'pvu', 'Phvul.007G056000' => 'pvu', 'Phvul.007G208000' => 'pvu', 'Phvul.008G119500' => 'pvu', 'Phvul.010G011200' => 'pvu', 'Phvul.010G014800' => 'pvu', 'Phvul.011G062900' => 'pvu', 'Phvul.L007043' => 'pvu', 'Potri.001G242300' => 'ptr', 'Potri.002G185300' => 'ptr', 'Potri.006G086900' => 'ptr', 'Potri.008G151700' => 'ptr', 'Potri.009G033500' => 'ptr', 'Potri.010G089300' => 'ptr', 'Potri.014G110800' => 'ptr', 'Pp3c27_8130' => 'ppa', 'Pp3c6_27410' => 'ppa', 'PRCOL_00001659' => 'pco', 'PRCOL_00001927' => 'pco', 'PRCOL_00003649' => 'pco', 'Prupe.1G011600' => 'ppe', 'Prupe.3G000800' => 'ppe', 'Prupe.3G001100' => 'ppe', 'Prupe.6G072700' => 'ppe', 'Prupe.6G072800' => 'ppe', 'Prupe.6G257300' => 'ppe', 'Prupe.8G033000' => 'ppe', 'Psat0s2633g0080' => 'psa', 'Psat0s3396g0080' => 'psa', 'Psat0s3396g0200' => 'psa', 'Psat3g139080' => 'psa', 'Psat5g285080' => 'psa', 'Psat6g157760' => 'psa', 'Psat6g208440' => 'psa', 'Psat7g215320' => 'psa', 'Psat7g215400' => 'psa', 'Psat7g235600' => 'psa', 'Psat7g235760' => 'psa', 'PSO063G4603' => 'pso', 'PSO210G0182' => 'pso', 'PSO210G0196' => 'pso', 'PSO339G0394' => 'pso', 'PSO339G4127' => 'pso', 'PSO513G0064' => 'pso', 'PSO761G0079' => 'pso', 'QL01p031003' => 'qlo', 'QL01p031078' => 'qlo', 'QL06p003004' => 'qlo', 'QL07p048731' => 'qlo', 'QL09p037427' => 'qlo', 'RcHm_v2.0_Chr3g0466361' => 'rch', 'RcHm_v2.0_Chr3g0485571' => 'rch', 'RcHm_v2.0_Chr4g0416551' => 'rch', 'RcHm_v2.0_Chr5g0065831' => 'rch', 'Rhsim01G0230500' => 'rsi', 'Rhsim05G0194000' => 'rsi', 'Rhsim08G0250400' => 'rsi', 'Sabra02G0131000' => 'sbr', 'Sabra06G0066300' => 'sbr', 'Sabra08G0115500' => 'sbr', 'Sabra09G0023900' => 'sbr', 'Sabra10G0054000' => 'sbr', 'Sabra14G0081500' => 'sbr', 'Sabra16G0147100' => 'sbr', 'SalBow2G2957' => 'sbo', 'SalBow4G3320' => 'sbo', 'SalBow8G1894' => 'sbo', 'Sc07g0007950' => 'sci', 'Sc12g0001360' => 'sci', 'Sc13g0004330' => 'sci', 'Sc20g0005010' => 'sci', 'Sed0000361' => 'sed', 'Sed0001706' => 'sed', 'Sed0002422' => 'sed', 'Sed0004029' => 'sed', 'Sed0004602' => 'sed', 'Sed0004943' => 'sed', 'Sed0008646' => 'sed', 'Sed0023313' => 'sed', 'Sed0024843' => 'sed', 'SEGI_00081' => 'sgi', 'SEGI_00947' => 'sgi', 'SEGI_04046' => 'sgi', 'SEGI_06880' => 'sgi', 'SEGI_09736' => 'sgi', 'SEGI_12741' => 'sgi', 'SEGI_14530' => 'sgi', 'SEGI_20705' => 'sgi', 'SEGI_26088' => 'sgi', 'SEGI_28323' => 'sgi', 'SEGI_33343' => 'sgi', 'SGA_v2.0_scaffold126G33775' => 'sas', 'SGA_v2.0_scaffold2G01337' => 'sas', 'SGA_v2.0_scaffold38G15006' => 'sas', 'SGA_v2.0_scaffold39G15264' => 'sas', 'SGA_v2.0_scaffold453G51880' => 'sas', 'SHI12696' => 'shi', 'SMO367G1096' => 'smo', 'Solyc01g068630.3' => 'sly', 'Solyc05g011880.3' => 'sly', 'Solyc06g076300.3' => 'sly', 'Solyc09g010940.4' => 'sly', 'Solyc09g075890.3' => 'sly', 'Sopen01g030560' => 'spe', 'Sopen05g006630' => 'spe', 'Sopen06g032720' => 'spe', 'Sopen09g005660' => 'spe', 'Sopen09g030690' => 'spe', 'Sp4g14540' => 'spa', 'Sp4g20030' => 'spa', 'Sp5g01320' => 'spa', 'Sp6g21170' => 'spa', 'Sp6g21180' => 'spa', 'Sp6g21190' => 'spa', 'Sp6g40220' => 'spa', 'TAR362G0122' => 'tar', 'TAR362G1338' => 'tar', 'TAR369G0590' => 'tar', 'TAR371G0824' => 'tar', 'TAR622G1429' => 'tar', 'TAR623G0734' => 'tar', 'TAR625G0441' => 'tar', 'TAR629G0976' => 'tar', 'TAR633G1195' => 'tar', 'TAR636G2660' => 'tar', 'THA.LOC104799440' => 'tha', 'THA.LOC104800966' => 'tha', 'THA.LOC104806559' => 'tha', 'THA.LOC104810765' => 'tha', 'THA.LOC104816266' => 'tha', 'THA.LOC104817419' => 'tha', 'THA.LOC104827021' => 'tha', 'Thecc.01G327400' => 'tca', 'Thecc.04G229200' => 'tca', 'Thecc.05G037400' => 'tca', 'Thecc.09G318600' => 'tca', 'Thecc.09G318700' => 'tca', 'Thhalv10006238m.g' => 'esa', 'Thhalv10014321m.g' => 'esa', 'Thhalv10014335m.g' => 'esa', 'Thhalv10015826m.g' => 'esa', 'Thhalv10017107m.g' => 'esa', 'Thhalv10017180m.g' => 'esa', 'Thhalv10029339m.g' => 'esa', 'TPR.G1699' => 'tpr', 'TPR.G23609' => 'tpr', 'TPR.G3081' => 'tpr', 'TPR.G40397' => 'tpr', 'TPR.G5522' => 'tpr', 'TPR.G5618' => 'tpr', 'TPR.G5626' => 'tpr', 'TWI09G1632' => 'twi', 'TWI23G1230' => 'twi', 'TWI53G1064' => 'twi', 'TWI59G0751' => 'twi', 'TWI74G0947' => 'twi', 'TWI77G0337' => 'twi', 'TWI79G1254' => 'twi', 'unitig_0.g2341' => 'ugi', 'unitig_26.g10006' => 'ugi', 'unitig_26.g10008' => 'ugi', 'unitig_26.g9192' => 'ugi', 'vmacro14547' => 'vma', 'vmacro15333' => 'vma', 'vmacro18743' => 'vma', 'vmacro20166' => 'vma', 'VMungo0331G0523' => 'vmu', 'VMungo0331G1202' => 'vmu', 'VMungo0720G1228' => 'vmu', 'VMungo0720G1514' => 'vmu', 'VMungo1080G0169' => 'vmu', 'VMungo1127G1475' => 'vmu', 'VMungo1383G1208' => 'vmu', 'VMungo1383G1698' => 'vmu', 'Zm00001eb012270' => 'zma', 'Zm00001eb054100' => 'zma', 'Zm00001eb063350' => 'zma', 'Zm00001eb328560' => 'zma', 'Zm00001eb342820' => 'zma', 'Zm00001eb362210' => 'zma', 'Zm00001eb397730' => 'zma', 'Zm00001eb399750' => 'zma' ), 'gf_id' => 'HOM05D000959', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000959' ), 'data_identifier' => 'HOM05D000959', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000959', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '622', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p07100' => 'bna', 'A03p11720' => 'bna', 'A05p08300' => 'bna', 'A05p13380' => 'bna', 'A09p54130' => 'bna', 'A10p16690' => 'bna', 'A10p16700' => 'bna', 'A10p33390' => 'bna', 'Aa31LG10G16020' => 'aar', 'Aa31LG1G11810' => 'aar', 'Aa31LG1G11830' => 'aar', 'Aa31LG1G22510' => 'aar', 'Aa31LG5G4890' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5793' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2310' => 'aag', 'Actinidia08499' => 'ach', 'Actinidia11262' => 'ach', 'Actinidia23926' => 'ach', 'Actinidia34420' => 'ach', 'Actinidia36970' => 'ach', 'Ah.02g111220' => 'amhyb', 'Ah.15g097750' => 'amhyb', 'AL4G27500' => 'aly', 'AL6G11470' => 'aly', 'AL8G35950' => 'aly', 'AL8G35960' => 'aly', 'AL8G35970' => 'aly', 'Aqoxy1G00912' => 'aox', 'Aqoxy2G02253' => 'aox', 'Aqoxy2G02411' => 'aox', 'Aqoxy5G00485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BZ66YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K8ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM4FUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6BF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HFV7XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25JBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0YNNV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MAKK6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P70IT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP2Z6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V61LZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YWP64R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3S9AI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7PGHH' => 'arhy', 'AT2G32150' => 'ath', 'AT3G62040' => 'ath', 'AT5G02230' => 'ath', 'AT5G59480' => 'ath', 'AT5G59490' => 'ath', 'ATR0332G060' => 'atr', 'ATR0559G190' => 'atr', 'ATR0693G294' => 'atr', 'Atru.chr3.3975' => 'acertr', 'Atru.chr3.3976' => 'acertr', 'Atru.chr3.3977' => 'acertr', 'Atru.chr4.2498' => 'acertr', 'Atru.chr5.838' => 'acertr', 'Atru.chr8.1990' => 'acertr', 'Atru.chr8.1991' => 'acertr', 'Atru.chr8.1992' => 'acertr', 'AUR62001759' => 'cqu', 'AUR62009545' => 'cqu', 'AUR62010474' => 'cqu', 'AUR62025820' => 'cqu', 'AUR62030422' => 'cqu', 'AUR62033605' => 'cqu', 'AUR62038615' => 'cqu', 'AUR62041347' => 'cqu', 'BcaB01g04574' => 'bca', 'BcaB02g09263' => 'bca', 'BcaB02g10453' => 'bca', 'BcaB05g22513' => 'bca', 'BcaB08g36253' => 'bca', 'BcaB08g36254' => 'bca', 'BcaC01g06519' => 'bca', 'BcaC02g11889' => 'bca', 'BcaC03g14010' => 'bca', 'BcaC03g18439' => 'bca', 'BcaC04g19765' => 'bca', 'BcaC09g48432' => 'bca', 'BcaNung07302' => 'bca', 'BolC2t06040H' => 'bol', 'BolC2t07346H' => 'bol', 'BolC3t13817H' => 'bol', 'BolC4t22625H' => 'bol', 'BolC4t23297H' => 'bol', 'BolC8t51278H' => 'bol', 'BolC9t58050H' => 'bol', 'BolC9t58051H' => 'bol', 'BolC9t60163H' => 'bol', 'BraA02t04712Z' => 'bra', 'BraA02t05791Z' => 'bra', 'BraA03t10483Z' => 'bra', 'BraA05t19795Z' => 'bra', 'BraA05t20276Z' => 'bra', 'BraA09t40827Z' => 'bra', 'BraA10t43750Z' => 'bra', 'BraA10t43751Z' => 'bra', 'BraA10t45370Z' => 'bra', 'C02p00400' => 'bna', 'C02p12460' => 'bna', 'C03p13680' => 'bna', 'C04p10270' => 'bna', 'C04p17500' => 'bna', 'C08p37010' => 'bna', 'C09p51880' => 'bna', 'C09p51890' => 'bna', 'C09p74300' => 'bna', 'CAN.G179.26' => 'can', 'CAN.G3384.1' => 'can', 'CAN.G394.68' => 'can', 'CAN.G907.13' => 'can', 'CANSAT11G0012' => 'cansat', 'CANSAT25G1586' => 'cansat', 'CANSAT35G0735' => 'cansat', 'CANSAT54G0556' => 'cansat', 'CANSAT64G0356' => 'cansat', 'CANSAT78G2042' => 'cansat', 'CARHR125920' => 'chi', 'CARHR131910' => 'chi', 'CARHR172390' => 'chi', 'CARHR211140' => 'chi', 'CARHR285850' => 'chi', 'CARHR285860' => 'chi', 'Carub.0004s1347' => 'cru', 'Carub.0004s1960' => 'cru', 'Carub.0005s2880' => 'cru', 'Carub.0006s0107' => 'cru', 'Carub.0008s2015' => 'cru', 'Carub.0008s2016' => 'cru', 'Carub.0008s2017' => 'cru', 'Ca_01315_v3' => 'car', 'Ca_05063_v3' => 'car', 'Ca_10231_v3' => 'car', 'Ca_10913_v3' => 'car', 'Ca_19156_v3' => 'car', 'Ca_23644_v3' => 'car', 'Ca_26735_v3' => 'car', 'Cc01_g13130' => 'ccan', 'Cc02_g21690' => 'ccan', 'Cc03_g03600' => 'ccan', 'Cc06_g02510' => 'ccan', 'CDE02G1265' => 'cde', 'CDE05G0415' => 'cde', 'CDE08G1082' => 'cde', 'Cfa005780' => 'cfa', 'Cfa011522' => 'cfa', 'Cfa011523' => 'cfa', 'Cfa015627' => 'cfa', 'Cfa017359' => 'cfa', 'Ciclev10005687m.g' => 'ccl', 'Ciclev10012173m.g' => 'ccl', 'Ciclev10021621m.g' => 'ccl', 'Ciclev10028968m.g' => 'ccl', 'Ciclev10029907m.g' => 'ccl', 'CiPaw.01G164800' => 'cil', 'CiPaw.07G083700' => 'cil', 'CiPaw.07G127000' => 'cil', 'CiPaw.07G136900' => 'cil', 'CiPaw.08G081700' => 'cil', 'CiPaw.09G194600' => 'cil', 'CiPaw.10G146500' => 'cil', 'CiPaw.13G091500' => 'cil', 'CiPaw.13G091600' => 'cil', 'ClCG00G003390' => 'cla', 'ClCG01G007220' => 'cla', 'ClCG03G001370' => 'cla', 'ClCG04G008100' => 'cla', 'ClCG06G006110' => 'cla', 'ClCG06G006130' => 'cla', 'ClCG10G021210' => 'cla', 'COL.COLO4_07648' => 'col', 'COL.COLO4_07650' => 'col', 'COL.COLO4_07651' => 'col', 'COL.COLO4_14780' => 'col', 'COL.COLO4_18546' => 'col', 'COL.COLO4_18547' => 'col', 'COL.COLO4_23103' => 'col', 'COL.COLO4_30419' => 'col', 'COL.COLO4_34232' => 'col', 'Cpa.g.sc169.20' => 'cpa', 'Cpa.g.sc57.45' => 'cpa', 'Cpa.g.sc58.124' => 'cpa', 'Cpa.g.sc58.125' => 'cpa', 'Cpa.g.sc81.118' => 'cpa', 'Cpa.g.sc81.119' => 'cpa', 'Cre12.g524700' => 'cre', 'CsaV3_1G034430' => 'csa', 'CsaV3_1G034440' => 'csa', 'CsaV3_1G034450' => 'csa', 'CsaV3_3G034830' => 'csa', 'CsaV3_4G025090' => 'csa', 'CsaV3_5G018660' => 'csa', 'CsaV3_6G038160' => 'csa', 'CSS0003447' => 'camsi', 'CSS0017840' => 'camsi', 'CSS0019260' => 'camsi', 'CSS0040375' => 'camsi', 'CSS0042533' => 'camsi', 'DCAR_005960' => 'dca', 'DCAR_012104' => 'dca', 'DCAR_012105' => 'dca', 'DCAR_012293' => 'dca', 'DCAR_015632' => 'dca', 'DCAR_024602' => 'dca', 'DCAR_028752' => 'dca', 'Dinv06261' => 'din', 'Dinv13982' => 'din', 'Dinv17029' => 'din', 'Dinv18463' => 'din', 'Dinv33181' => 'din', 'Dinv35585' => 'din', 'Dinv37161' => 'din', 'Dinv42977' => 'din', 'Dinv43122' => 'din', 'Dinv44517' => 'din', 'Duzib093G0256' => 'dzi', 'Duzib106G1254' => 'dzi', 'Duzib128G1789' => 'dzi', 'Duzib133G0633' => 'dzi', 'Duzib138G0510' => 'dzi', 'Duzib150G1084' => 'dzi', 'Duzib168G0488' => 'dzi', 'Duzib168G1523' => 'dzi', 'Duzib170G0133' => 'dzi', 'ECA234G1433' => 'eca', 'ECA236G1432' => 'eca', 'ECA236G2256' => 'eca', 'ECA236G2365' => 'eca', 'ECA236G4830' => 'eca', 'ECA248G1505' => 'eca', 'EL10Ac3g06431' => 'bvu', 'EL10Ac5g12577' => 'bvu', 'EL10Ac6g13533' => 'bvu', 'EL10Ac7g16045' => 'bvu', 'Eucgr.A01281' => 'egr', 'Eucgr.B02326' => 'egr', 'Eucgr.H03532' => 'egr', 'Eucgr.K00553' => 'egr', 'Eucgr.K03116' => 'egr', 'FAN02G3963' => 'fan', 'FAN05G0438' => 'fan', 'FAN09G2434' => 'fan', 'FAN12G3984' => 'fan', 'FAN14G0798' => 'fan', 'FAN17G0652' => 'fan', 'FAN19G1988' => 'fan', 'FAN22G0632' => 'fan', 'FAN23G0387' => 'fan', 'FAN26G1323' => 'fan', 'FAN28G0666' => 'fan', 'FvH4_1g26080' => 'fve', 'FvH4_3g36780' => 'fve', 'FvH4_4g15270' => 'fve', 'FvH4_6g13490' => 'fve', 'Glyma.01G098700' => 'gma', 'Glyma.03G065900' => 'gma', 'Glyma.03G073754' => 'gma', 'Glyma.03G073758' => 'gma', 'Glyma.03G083200' => 'gma', 'Glyma.03G225500' => 'gma', 'Glyma.05G037766' => 'gma', 'Glyma.07G133500' => 'gma', 'Glyma.10G139400' => 'gma', 'Glyma.10G248900' => 'gma', 'Glyma.11G137800' => 'gma', 'Glyma.12G061300' => 'gma', 'Glyma.13G337900' => 'gma', 'Glyma.15G036600' => 'gma', 'Glyma.18G182800' => 'gma', 'Glyma.19G222500' => 'gma', 'Glyma.20G144800' => 'gma', 'Gohir.A01G222000' => 'ghi', 'Gohir.A03G044000' => 'ghi', 'Gohir.A03G044100' => 'ghi', 'Gohir.A04G083100' => 'ghi', 'Gohir.A07G127200' => 'ghi', 'Gohir.A07G132400' => 'ghi', 'Gohir.A08G000700' => 'ghi', 'Gohir.A11G327300' => 'ghi', 'Gohir.D01G211500' => 'ghi', 'Gohir.D03G123400' => 'ghi', 'Gohir.D03G123500' => 'ghi', 'Gohir.D04G121800' => 'ghi', 'Gohir.D07G131500' => 'ghi', 'Gohir.D07G136600' => 'ghi', 'Gohir.D08G011600' => 'ghi', 'Gohir.D11G346200' => 'ghi', 'Gorai.001G142800' => 'gra', 'Gorai.001G148700' => 'gra', 'Gorai.002G257300' => 'gra', 'Gorai.003G130000' => 'gra', 'Gorai.003G130100' => 'gra', 'Gorai.004G005300' => 'gra', 'Gorai.007G376500' => 'gra', 'Gorai.012G104700' => 'gra', 'GSVIVG01017946001' => 'vvi', 'GSVIVG01024928001' => 'vvi', 'GSVIVG01028227001' => 'vvi', 'GSVIVG01034151001' => 'vvi', 'HanXRQChr05g0135031' => 'han', 'HanXRQChr05g0135041' => 'han', 'HanXRQChr05g0140021' => 'han', 'HanXRQChr06g0178981' => 'han', 'HanXRQChr07g0188251' => 'han', 'HanXRQChr08g0235311' => 'han', 'HanXRQChr09g0271011' => 'han', 'HanXRQChr10g0293321' => 'han', 'HanXRQChr13g0388171' => 'han', 'Haze_00916' => 'cav', 'Haze_05063' => 'cav', 'Haze_20814' => 'cav', 'Haze_24128' => 'cav', 'Hma1.2p1_0745F.1_g212010' => 'hma', 'Hma1.2p1_0757F.1_g213260' => 'hma', 'Hma1.2p1_0936F.1_g238840' => 'hma', 'Hma1.2p1_1735F.1_g299890' => 'hma', 'Hma1.2p1_1861F.1_g305685' => 'hma', 'HPP92_003397' => 'vpl', 'HPP92_012597' => 'vpl', 'HPP92_015520' => 'vpl', 'HPP92_015539' => 'vpl', 'HPP92_020373' => 'vpl', 'Hund04938' => 'sun', 'Hund10677' => 'sun', 'Hund11033' => 'sun', 'Hund12155' => 'sun', 'Lalb_Chr01g0022551' => 'lal', 'Lalb_Chr03g0042341' => 'lal', 'Lalb_Chr07g0192931' => 'lal', 'Lalb_Chr12g0209551' => 'lal', 'Lalb_Chr19g0125251' => 'lal', 'Lalb_Chr19g0137891' => 'lal', 'Lalb_Chr21g0304641' => 'lal', 'Lalb_Chr21g0309881' => 'lal', 'Lj1A5T12' => 'lonja', 'Lj1C148G10' => 'lonja', 'Lj2A93T83' => 'lonja', 'Lj3A738G68' => 'lonja', 'Lj3C966T1' => 'lonja', 'Lj3g0018958' => 'lja', 'Lj3g0021831' => 'lja', 'Lj3g0025443' => 'lja', 'Lj4g0026809' => 'lja', 'Lj5g0012558' => 'lja', 'Lj5g0021586' => 'lja', 'Lsat_1_v5_gn_5_156840' => 'lsa', 'Lsat_1_v5_gn_8_73460' => 'lsa', 'Lsat_1_v5_gn_8_73481' => 'lsa', 'Lsat_1_v5_gn_9_31601' => 'lsa', 'Lsat_1_v5_gn_9_77320' => 'lsa', 'Manes.01G171300' => 'mes', 'Manes.01G171400' => 'mes', 'Manes.01G236100' => 'mes', 'Manes.02G130500' => 'mes', 'Manes.02G130600' => 'mes', 'Manes.03G180200' => 'mes', 'Manes.05G007000' => 'mes', 'Manes.08G084400' => 'mes', 'Manes.09G092600' => 'mes', 'Manes.15G027900' => 'mes', 'MBI04_g40948_MAGBIO' => 'mbi', 'MBI14_g12123_MAGBIO' => 'mbi', 'MBI18_g28915_MAGBIO' => 'mbi', 'MCO09G053' => 'mco', 'MCO11G782' => 'mco', 'MCO15G215' => 'mco', 'MD03G1088500' => 'mdo', 'MD03G1088600' => 'mdo', 'MD04G1130800' => 'mdo', 'MD09G1291700' => 'mdo', 'MD11G1097500' => 'mdo', 'MD11G1097600' => 'mdo', 'MD12G1143900' => 'mdo', 'MD13G1191400' => 'mdo', 'MD16G1191500' => 'mdo', 'Medtr1g085570' => 'mtr', 'Medtr1g104610' => 'mtr', 'Medtr2g097520' => 'mtr', 'Medtr4g021800' => 'mtr', 'Medtr4g021825' => 'mtr', 'Medtr4g064270' => 'mtr', 'Medtr4g064380' => 'mtr', 'Medtr7g062150' => 'mtr', 'MELO3C003138.2' => 'cme', 'MELO3C005187.2' => 'cme', 'MELO3C009252.2' => 'cme', 'MELO3C014481.2' => 'cme', 'MELO3C020616.2' => 'cme', 'MELO3C020617.2' => 'cme', 'MELO3C020618.2' => 'cme', 'Migut.G00328' => 'egut', 'Migut.J00320' => 'egut', 'Migut.L01000' => 'egut', 'Migut.L01953' => 'egut', 'MSTRG.10253' => 'ama', 'MSTRG.19077' => 'ama', 'MSTRG.26780' => 'ama', 'MSTRG.4023' => 'ama', 'MSTRG.5655' => 'ama', 'MSTRG.9992' => 'ama', 'Nitab4.5_0000043g0310' => 'nta', 'Nitab4.5_0000463g0080' => 'nta', 'Nitab4.5_0000705g0170' => 'nta', 'Nitab4.5_0001326g0060' => 'nta', 'Nitab4.5_0001628g0030' => 'nta', 'Nitab4.5_0002103g0110' => 'nta', 'Nitab4.5_0002946g0030' => 'nta', 'Nitab4.5_0004639g0030' => 'nta', 'Nn2g11149' => 'nnu', 'Nn2g13389' => 'nnu', 'Nn4g25326' => 'nnu', 'Nn4g26290' => 'nnu', 'Nn5g29865' => 'nnu', 'Oeu004163.1' => 'oeu', 'Oeu006901.1' => 'oeu', 'Oeu010096.1' => 'oeu', 'Oeu024340.1' => 'oeu', 'Oeu048369.1' => 'oeu', 'Os01g0973000' => 'osa', 'Os03g0273800' => 'osa', 'Os03g0701200' => 'osa', 'Os03g0834050' => 'osa', 'Os07g0634400' => 'osa', 'Peaxi162Scf00092g01414' => 'pax', 'Peaxi162Scf00165g00818' => 'pax', 'Peaxi162Scf00309g00516' => 'pax', 'Peaxi162Scf00774g00218' => 'pax', 'PGR004G1824' => 'pgr', 'PGR004G2606' => 'pgr', 'PGR031G2716' => 'pgr', 'PGR102G2460' => 'pgr', 'PGR142G2599' => 'pgr', 'PGSC0003DMG400000843' => 'stu', 'PGSC0003DMG400008829' => 'stu', 'PGSC0003DMG400030418' => 'stu', 'PGSC0003DMG400031834' => 'stu', 'PGSC0003DMG401028300' => 'stu', 'PGSC0003DMG402028300' => 'stu', 'Phvul.001G219300' => 'pvu', 'Phvul.007G056000' => 'pvu', 'Phvul.007G208000' => 'pvu', 'Phvul.008G119500' => 'pvu', 'Phvul.010G011200' => 'pvu', 'Phvul.010G014800' => 'pvu', 'Phvul.011G062900' => 'pvu', 'Phvul.L007043' => 'pvu', 'Potri.001G242300' => 'ptr', 'Potri.002G185300' => 'ptr', 'Potri.006G086900' => 'ptr', 'Potri.008G151700' => 'ptr', 'Potri.009G033500' => 'ptr', 'Potri.010G089300' => 'ptr', 'Potri.014G110800' => 'ptr', 'Pp3c27_8130' => 'ppa', 'Pp3c6_27410' => 'ppa', 'PRCOL_00001659' => 'pco', 'PRCOL_00001927' => 'pco', 'PRCOL_00003649' => 'pco', 'Prupe.1G011600' => 'ppe', 'Prupe.3G000800' => 'ppe', 'Prupe.3G001100' => 'ppe', 'Prupe.6G072700' => 'ppe', 'Prupe.6G072800' => 'ppe', 'Prupe.6G257300' => 'ppe', 'Prupe.8G033000' => 'ppe', 'Psat0s2633g0080' => 'psa', 'Psat0s3396g0080' => 'psa', 'Psat0s3396g0200' => 'psa', 'Psat3g139080' => 'psa', 'Psat5g285080' => 'psa', 'Psat6g157760' => 'psa', 'Psat6g208440' => 'psa', 'Psat7g215320' => 'psa', 'Psat7g215400' => 'psa', 'Psat7g235600' => 'psa', 'Psat7g235760' => 'psa', 'PSO063G4603' => 'pso', 'PSO210G0182' => 'pso', 'PSO210G0196' => 'pso', 'PSO339G0394' => 'pso', 'PSO339G4127' => 'pso', 'PSO513G0064' => 'pso', 'PSO761G0079' => 'pso', 'QL01p031003' => 'qlo', 'QL01p031078' => 'qlo', 'QL06p003004' => 'qlo', 'QL07p048731' => 'qlo', 'QL09p037427' => 'qlo', 'RcHm_v2.0_Chr3g0466361' => 'rch', 'RcHm_v2.0_Chr3g0485571' => 'rch', 'RcHm_v2.0_Chr4g0416551' => 'rch', 'RcHm_v2.0_Chr5g0065831' => 'rch', 'Rhsim01G0230500' => 'rsi', 'Rhsim05G0194000' => 'rsi', 'Rhsim08G0250400' => 'rsi', 'Sabra02G0131000' => 'sbr', 'Sabra06G0066300' => 'sbr', 'Sabra08G0115500' => 'sbr', 'Sabra09G0023900' => 'sbr', 'Sabra10G0054000' => 'sbr', 'Sabra14G0081500' => 'sbr', 'Sabra16G0147100' => 'sbr', 'SalBow2G2957' => 'sbo', 'SalBow4G3320' => 'sbo', 'SalBow8G1894' => 'sbo', 'Sc07g0007950' => 'sci', 'Sc12g0001360' => 'sci', 'Sc13g0004330' => 'sci', 'Sc20g0005010' => 'sci', 'Sed0000361' => 'sed', 'Sed0001706' => 'sed', 'Sed0002422' => 'sed', 'Sed0004029' => 'sed', 'Sed0004602' => 'sed', 'Sed0004943' => 'sed', 'Sed0008646' => 'sed', 'Sed0023313' => 'sed', 'Sed0024843' => 'sed', 'SEGI_00081' => 'sgi', 'SEGI_00947' => 'sgi', 'SEGI_04046' => 'sgi', 'SEGI_06880' => 'sgi', 'SEGI_09736' => 'sgi', 'SEGI_12741' => 'sgi', 'SEGI_14530' => 'sgi', 'SEGI_20705' => 'sgi', 'SEGI_26088' => 'sgi', 'SEGI_28323' => 'sgi', 'SEGI_33343' => 'sgi', 'SGA_v2.0_scaffold126G33775' => 'sas', 'SGA_v2.0_scaffold2G01337' => 'sas', 'SGA_v2.0_scaffold38G15006' => 'sas', 'SGA_v2.0_scaffold39G15264' => 'sas', 'SGA_v2.0_scaffold453G51880' => 'sas', 'SHI12696' => 'shi', 'SMO367G1096' => 'smo', 'Solyc01g068630.3' => 'sly', 'Solyc05g011880.3' => 'sly', 'Solyc06g076300.3' => 'sly', 'Solyc09g010940.4' => 'sly', 'Solyc09g075890.3' => 'sly', 'Sopen01g030560' => 'spe', 'Sopen05g006630' => 'spe', 'Sopen06g032720' => 'spe', 'Sopen09g005660' => 'spe', 'Sopen09g030690' => 'spe', 'Sp4g14540' => 'spa', 'Sp4g20030' => 'spa', 'Sp5g01320' => 'spa', 'Sp6g21170' => 'spa', 'Sp6g21180' => 'spa', 'Sp6g21190' => 'spa', 'Sp6g40220' => 'spa', 'TAR362G0122' => 'tar', 'TAR362G1338' => 'tar', 'TAR369G0590' => 'tar', 'TAR371G0824' => 'tar', 'TAR622G1429' => 'tar', 'TAR623G0734' => 'tar', 'TAR625G0441' => 'tar', 'TAR629G0976' => 'tar', 'TAR633G1195' => 'tar', 'TAR636G2660' => 'tar', 'THA.LOC104799440' => 'tha', 'THA.LOC104800966' => 'tha', 'THA.LOC104806559' => 'tha', 'THA.LOC104810765' => 'tha', 'THA.LOC104816266' => 'tha', 'THA.LOC104817419' => 'tha', 'THA.LOC104827021' => 'tha', 'Thecc.01G327400' => 'tca', 'Thecc.04G229200' => 'tca', 'Thecc.05G037400' => 'tca', 'Thecc.09G318600' => 'tca', 'Thecc.09G318700' => 'tca', 'Thhalv10006238m.g' => 'esa', 'Thhalv10014321m.g' => 'esa', 'Thhalv10014335m.g' => 'esa', 'Thhalv10015826m.g' => 'esa', 'Thhalv10017107m.g' => 'esa', 'Thhalv10017180m.g' => 'esa', 'Thhalv10029339m.g' => 'esa', 'TPR.G1699' => 'tpr', 'TPR.G23609' => 'tpr', 'TPR.G3081' => 'tpr', 'TPR.G40397' => 'tpr', 'TPR.G5522' => 'tpr', 'TPR.G5618' => 'tpr', 'TPR.G5626' => 'tpr', 'TWI09G1632' => 'twi', 'TWI23G1230' => 'twi', 'TWI53G1064' => 'twi', 'TWI59G0751' => 'twi', 'TWI74G0947' => 'twi', 'TWI77G0337' => 'twi', 'TWI79G1254' => 'twi', 'unitig_0.g2341' => 'ugi', 'unitig_26.g10006' => 'ugi', 'unitig_26.g10008' => 'ugi', 'unitig_26.g9192' => 'ugi', 'vmacro14547' => 'vma', 'vmacro15333' => 'vma', 'vmacro18743' => 'vma', 'vmacro20166' => 'vma', 'VMungo0331G0523' => 'vmu', 'VMungo0331G1202' => 'vmu', 'VMungo0720G1228' => 'vmu', 'VMungo0720G1514' => 'vmu', 'VMungo1080G0169' => 'vmu', 'VMungo1127G1475' => 'vmu', 'VMungo1383G1208' => 'vmu', 'VMungo1383G1698' => 'vmu', 'Zm00001eb012270' => 'zma', 'Zm00001eb054100' => 'zma', 'Zm00001eb063350' => 'zma', 'Zm00001eb328560' => 'zma', 'Zm00001eb342820' => 'zma', 'Zm00001eb362210' => 'zma', 'Zm00001eb397730' => 'zma', 'Zm00001eb399750' => 'zma' ) $gf_id = 'HOM05D000959' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000959' ) $data_identifier = 'HOM05D000959' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 5, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 5, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 10, 'mbi' => (int) 3, 'mco' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 2, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 3, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 11, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399750' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000959', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '622', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p07100' => 'bna', 'A03p11720' => 'bna', 'A05p08300' => 'bna', 'A05p13380' => 'bna', 'A09p54130' => 'bna', 'A10p16690' => 'bna', 'A10p16700' => 'bna', 'A10p33390' => 'bna', 'Aa31LG10G16020' => 'aar', 'Aa31LG1G11810' => 'aar', 'Aa31LG1G11830' => 'aar', 'Aa31LG1G22510' => 'aar', 'Aa31LG5G4890' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5793' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2310' => 'aag', 'Actinidia08499' => 'ach', 'Actinidia11262' => 'ach', 'Actinidia23926' => 'ach', 'Actinidia34420' => 'ach', 'Actinidia36970' => 'ach', 'Ah.02g111220' => 'amhyb', 'Ah.15g097750' => 'amhyb', 'AL4G27500' => 'aly', 'AL6G11470' => 'aly', 'AL8G35950' => 'aly', 'AL8G35960' => 'aly', 'AL8G35970' => 'aly', 'Aqoxy1G00912' => 'aox', 'Aqoxy2G02253' => 'aox', 'Aqoxy2G02411' => 'aox', 'Aqoxy5G00485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BZ66YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K8ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM4FUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6BF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HFV7XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25JBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0YNNV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MAKK6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P70IT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP2Z6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V61LZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YWP64R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3S9AI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7PGHH' => 'arhy', 'AT2G32150' => 'ath', 'AT3G62040' => 'ath', 'AT5G02230' => 'ath', 'AT5G59480' => 'ath', 'AT5G59490' => 'ath', 'ATR0332G060' => 'atr', 'ATR0559G190' => 'atr', 'ATR0693G294' => 'atr', 'Atru.chr3.3975' => 'acertr', 'Atru.chr3.3976' => 'acertr', 'Atru.chr3.3977' => 'acertr', 'Atru.chr4.2498' => 'acertr', 'Atru.chr5.838' => 'acertr', 'Atru.chr8.1990' => 'acertr', 'Atru.chr8.1991' => 'acertr', 'Atru.chr8.1992' => 'acertr', 'AUR62001759' => 'cqu', 'AUR62009545' => 'cqu', 'AUR62010474' => 'cqu', 'AUR62025820' => 'cqu', 'AUR62030422' => 'cqu', 'AUR62033605' => 'cqu', 'AUR62038615' => 'cqu', 'AUR62041347' => 'cqu', 'BcaB01g04574' => 'bca', 'BcaB02g09263' => 'bca', 'BcaB02g10453' => 'bca', 'BcaB05g22513' => 'bca', 'BcaB08g36253' => 'bca', 'BcaB08g36254' => 'bca', 'BcaC01g06519' => 'bca', 'BcaC02g11889' => 'bca', 'BcaC03g14010' => 'bca', 'BcaC03g18439' => 'bca', 'BcaC04g19765' => 'bca', 'BcaC09g48432' => 'bca', 'BcaNung07302' => 'bca', 'BolC2t06040H' => 'bol', 'BolC2t07346H' => 'bol', 'BolC3t13817H' => 'bol', 'BolC4t22625H' => 'bol', 'BolC4t23297H' => 'bol', 'BolC8t51278H' => 'bol', 'BolC9t58050H' => 'bol', 'BolC9t58051H' => 'bol', 'BolC9t60163H' => 'bol', 'BraA02t04712Z' => 'bra', 'BraA02t05791Z' => 'bra', 'BraA03t10483Z' => 'bra', 'BraA05t19795Z' => 'bra', 'BraA05t20276Z' => 'bra', 'BraA09t40827Z' => 'bra', 'BraA10t43750Z' => 'bra', 'BraA10t43751Z' => 'bra', 'BraA10t45370Z' => 'bra', 'C02p00400' => 'bna', 'C02p12460' => 'bna', 'C03p13680' => 'bna', 'C04p10270' => 'bna', 'C04p17500' => 'bna', 'C08p37010' => 'bna', 'C09p51880' => 'bna', 'C09p51890' => 'bna', 'C09p74300' => 'bna', 'CAN.G179.26' => 'can', 'CAN.G3384.1' => 'can', 'CAN.G394.68' => 'can', 'CAN.G907.13' => 'can', 'CANSAT11G0012' => 'cansat', 'CANSAT25G1586' => 'cansat', 'CANSAT35G0735' => 'cansat', 'CANSAT54G0556' => 'cansat', 'CANSAT64G0356' => 'cansat', 'CANSAT78G2042' => 'cansat', 'CARHR125920' => 'chi', 'CARHR131910' => 'chi', 'CARHR172390' => 'chi', 'CARHR211140' => 'chi', 'CARHR285850' => 'chi', 'CARHR285860' => 'chi', 'Carub.0004s1347' => 'cru', 'Carub.0004s1960' => 'cru', 'Carub.0005s2880' => 'cru', 'Carub.0006s0107' => 'cru', 'Carub.0008s2015' => 'cru', 'Carub.0008s2016' => 'cru', 'Carub.0008s2017' => 'cru', 'Ca_01315_v3' => 'car', 'Ca_05063_v3' => 'car', 'Ca_10231_v3' => 'car', 'Ca_10913_v3' => 'car', 'Ca_19156_v3' => 'car', 'Ca_23644_v3' => 'car', 'Ca_26735_v3' => 'car', 'Cc01_g13130' => 'ccan', 'Cc02_g21690' => 'ccan', 'Cc03_g03600' => 'ccan', 'Cc06_g02510' => 'ccan', 'CDE02G1265' => 'cde', 'CDE05G0415' => 'cde', 'CDE08G1082' => 'cde', 'Cfa005780' => 'cfa', 'Cfa011522' => 'cfa', 'Cfa011523' => 'cfa', 'Cfa015627' => 'cfa', 'Cfa017359' => 'cfa', 'Ciclev10005687m.g' => 'ccl', 'Ciclev10012173m.g' => 'ccl', 'Ciclev10021621m.g' => 'ccl', 'Ciclev10028968m.g' => 'ccl', 'Ciclev10029907m.g' => 'ccl', 'CiPaw.01G164800' => 'cil', 'CiPaw.07G083700' => 'cil', 'CiPaw.07G127000' => 'cil', 'CiPaw.07G136900' => 'cil', 'CiPaw.08G081700' => 'cil', 'CiPaw.09G194600' => 'cil', 'CiPaw.10G146500' => 'cil', 'CiPaw.13G091500' => 'cil', 'CiPaw.13G091600' => 'cil', 'ClCG00G003390' => 'cla', 'ClCG01G007220' => 'cla', 'ClCG03G001370' => 'cla', 'ClCG04G008100' => 'cla', 'ClCG06G006110' => 'cla', 'ClCG06G006130' => 'cla', 'ClCG10G021210' => 'cla', 'COL.COLO4_07648' => 'col', 'COL.COLO4_07650' => 'col', 'COL.COLO4_07651' => 'col', 'COL.COLO4_14780' => 'col', 'COL.COLO4_18546' => 'col', 'COL.COLO4_18547' => 'col', 'COL.COLO4_23103' => 'col', 'COL.COLO4_30419' => 'col', 'COL.COLO4_34232' => 'col', 'Cpa.g.sc169.20' => 'cpa', 'Cpa.g.sc57.45' => 'cpa', 'Cpa.g.sc58.124' => 'cpa', 'Cpa.g.sc58.125' => 'cpa', 'Cpa.g.sc81.118' => 'cpa', 'Cpa.g.sc81.119' => 'cpa', 'Cre12.g524700' => 'cre', 'CsaV3_1G034430' => 'csa', 'CsaV3_1G034440' => 'csa', 'CsaV3_1G034450' => 'csa', 'CsaV3_3G034830' => 'csa', 'CsaV3_4G025090' => 'csa', 'CsaV3_5G018660' => 'csa', 'CsaV3_6G038160' => 'csa', 'CSS0003447' => 'camsi', 'CSS0017840' => 'camsi', 'CSS0019260' => 'camsi', 'CSS0040375' => 'camsi', 'CSS0042533' => 'camsi', 'DCAR_005960' => 'dca', 'DCAR_012104' => 'dca', 'DCAR_012105' => 'dca', 'DCAR_012293' => 'dca', 'DCAR_015632' => 'dca', 'DCAR_024602' => 'dca', 'DCAR_028752' => 'dca', 'Dinv06261' => 'din', 'Dinv13982' => 'din', 'Dinv17029' => 'din', 'Dinv18463' => 'din', 'Dinv33181' => 'din', 'Dinv35585' => 'din', 'Dinv37161' => 'din', 'Dinv42977' => 'din', 'Dinv43122' => 'din', 'Dinv44517' => 'din', 'Duzib093G0256' => 'dzi', 'Duzib106G1254' => 'dzi', 'Duzib128G1789' => 'dzi', 'Duzib133G0633' => 'dzi', 'Duzib138G0510' => 'dzi', 'Duzib150G1084' => 'dzi', 'Duzib168G0488' => 'dzi', 'Duzib168G1523' => 'dzi', 'Duzib170G0133' => 'dzi', 'ECA234G1433' => 'eca', 'ECA236G1432' => 'eca', 'ECA236G2256' => 'eca', 'ECA236G2365' => 'eca', 'ECA236G4830' => 'eca', 'ECA248G1505' => 'eca', 'EL10Ac3g06431' => 'bvu', 'EL10Ac5g12577' => 'bvu', 'EL10Ac6g13533' => 'bvu', 'EL10Ac7g16045' => 'bvu', 'Eucgr.A01281' => 'egr', 'Eucgr.B02326' => 'egr', 'Eucgr.H03532' => 'egr', 'Eucgr.K00553' => 'egr', 'Eucgr.K03116' => 'egr', 'FAN02G3963' => 'fan', 'FAN05G0438' => 'fan', 'FAN09G2434' => 'fan', 'FAN12G3984' => 'fan', 'FAN14G0798' => 'fan', 'FAN17G0652' => 'fan', 'FAN19G1988' => 'fan', 'FAN22G0632' => 'fan', 'FAN23G0387' => 'fan', 'FAN26G1323' => 'fan', 'FAN28G0666' => 'fan', 'FvH4_1g26080' => 'fve', 'FvH4_3g36780' => 'fve', 'FvH4_4g15270' => 'fve', 'FvH4_6g13490' => 'fve', 'Glyma.01G098700' => 'gma', 'Glyma.03G065900' => 'gma', 'Glyma.03G073754' => 'gma', 'Glyma.03G073758' => 'gma', 'Glyma.03G083200' => 'gma', 'Glyma.03G225500' => 'gma', 'Glyma.05G037766' => 'gma', 'Glyma.07G133500' => 'gma', 'Glyma.10G139400' => 'gma', 'Glyma.10G248900' => 'gma', 'Glyma.11G137800' => 'gma', 'Glyma.12G061300' => 'gma', 'Glyma.13G337900' => 'gma', 'Glyma.15G036600' => 'gma', 'Glyma.18G182800' => 'gma', 'Glyma.19G222500' => 'gma', 'Glyma.20G144800' => 'gma', 'Gohir.A01G222000' => 'ghi', 'Gohir.A03G044000' => 'ghi', 'Gohir.A03G044100' => 'ghi', 'Gohir.A04G083100' => 'ghi', 'Gohir.A07G127200' => 'ghi', 'Gohir.A07G132400' => 'ghi', 'Gohir.A08G000700' => 'ghi', 'Gohir.A11G327300' => 'ghi', 'Gohir.D01G211500' => 'ghi', 'Gohir.D03G123400' => 'ghi', 'Gohir.D03G123500' => 'ghi', 'Gohir.D04G121800' => 'ghi', 'Gohir.D07G131500' => 'ghi', 'Gohir.D07G136600' => 'ghi', 'Gohir.D08G011600' => 'ghi', 'Gohir.D11G346200' => 'ghi', 'Gorai.001G142800' => 'gra', 'Gorai.001G148700' => 'gra', 'Gorai.002G257300' => 'gra', 'Gorai.003G130000' => 'gra', 'Gorai.003G130100' => 'gra', 'Gorai.004G005300' => 'gra', 'Gorai.007G376500' => 'gra', 'Gorai.012G104700' => 'gra', 'GSVIVG01017946001' => 'vvi', 'GSVIVG01024928001' => 'vvi', 'GSVIVG01028227001' => 'vvi', 'GSVIVG01034151001' => 'vvi', 'HanXRQChr05g0135031' => 'han', 'HanXRQChr05g0135041' => 'han', 'HanXRQChr05g0140021' => 'han', 'HanXRQChr06g0178981' => 'han', 'HanXRQChr07g0188251' => 'han', 'HanXRQChr08g0235311' => 'han', 'HanXRQChr09g0271011' => 'han', 'HanXRQChr10g0293321' => 'han', 'HanXRQChr13g0388171' => 'han', 'Haze_00916' => 'cav', 'Haze_05063' => 'cav', 'Haze_20814' => 'cav', 'Haze_24128' => 'cav', 'Hma1.2p1_0745F.1_g212010' => 'hma', 'Hma1.2p1_0757F.1_g213260' => 'hma', 'Hma1.2p1_0936F.1_g238840' => 'hma', 'Hma1.2p1_1735F.1_g299890' => 'hma', 'Hma1.2p1_1861F.1_g305685' => 'hma', 'HPP92_003397' => 'vpl', 'HPP92_012597' => 'vpl', 'HPP92_015520' => 'vpl', 'HPP92_015539' => 'vpl', 'HPP92_020373' => 'vpl', 'Hund04938' => 'sun', 'Hund10677' => 'sun', 'Hund11033' => 'sun', 'Hund12155' => 'sun', 'Lalb_Chr01g0022551' => 'lal', 'Lalb_Chr03g0042341' => 'lal', 'Lalb_Chr07g0192931' => 'lal', 'Lalb_Chr12g0209551' => 'lal', 'Lalb_Chr19g0125251' => 'lal', 'Lalb_Chr19g0137891' => 'lal', 'Lalb_Chr21g0304641' => 'lal', 'Lalb_Chr21g0309881' => 'lal', 'Lj1A5T12' => 'lonja', 'Lj1C148G10' => 'lonja', 'Lj2A93T83' => 'lonja', 'Lj3A738G68' => 'lonja', 'Lj3C966T1' => 'lonja', 'Lj3g0018958' => 'lja', 'Lj3g0021831' => 'lja', 'Lj3g0025443' => 'lja', 'Lj4g0026809' => 'lja', 'Lj5g0012558' => 'lja', 'Lj5g0021586' => 'lja', 'Lsat_1_v5_gn_5_156840' => 'lsa', 'Lsat_1_v5_gn_8_73460' => 'lsa', 'Lsat_1_v5_gn_8_73481' => 'lsa', 'Lsat_1_v5_gn_9_31601' => 'lsa', 'Lsat_1_v5_gn_9_77320' => 'lsa', 'Manes.01G171300' => 'mes', 'Manes.01G171400' => 'mes', 'Manes.01G236100' => 'mes', 'Manes.02G130500' => 'mes', 'Manes.02G130600' => 'mes', 'Manes.03G180200' => 'mes', 'Manes.05G007000' => 'mes', 'Manes.08G084400' => 'mes', 'Manes.09G092600' => 'mes', 'Manes.15G027900' => 'mes', 'MBI04_g40948_MAGBIO' => 'mbi', 'MBI14_g12123_MAGBIO' => 'mbi', 'MBI18_g28915_MAGBIO' => 'mbi', 'MCO09G053' => 'mco', 'MCO11G782' => 'mco', 'MCO15G215' => 'mco', 'MD03G1088500' => 'mdo', 'MD03G1088600' => 'mdo', 'MD04G1130800' => 'mdo', 'MD09G1291700' => 'mdo', 'MD11G1097500' => 'mdo', 'MD11G1097600' => 'mdo', 'MD12G1143900' => 'mdo', 'MD13G1191400' => 'mdo', 'MD16G1191500' => 'mdo', 'Medtr1g085570' => 'mtr', 'Medtr1g104610' => 'mtr', 'Medtr2g097520' => 'mtr', 'Medtr4g021800' => 'mtr', 'Medtr4g021825' => 'mtr', 'Medtr4g064270' => 'mtr', 'Medtr4g064380' => 'mtr', 'Medtr7g062150' => 'mtr', 'MELO3C003138.2' => 'cme', 'MELO3C005187.2' => 'cme', 'MELO3C009252.2' => 'cme', 'MELO3C014481.2' => 'cme', 'MELO3C020616.2' => 'cme', 'MELO3C020617.2' => 'cme', 'MELO3C020618.2' => 'cme', 'Migut.G00328' => 'egut', 'Migut.J00320' => 'egut', 'Migut.L01000' => 'egut', 'Migut.L01953' => 'egut', 'MSTRG.10253' => 'ama', 'MSTRG.19077' => 'ama', 'MSTRG.26780' => 'ama', 'MSTRG.4023' => 'ama', 'MSTRG.5655' => 'ama', 'MSTRG.9992' => 'ama', 'Nitab4.5_0000043g0310' => 'nta', 'Nitab4.5_0000463g0080' => 'nta', 'Nitab4.5_0000705g0170' => 'nta', 'Nitab4.5_0001326g0060' => 'nta', 'Nitab4.5_0001628g0030' => 'nta', 'Nitab4.5_0002103g0110' => 'nta', 'Nitab4.5_0002946g0030' => 'nta', 'Nitab4.5_0004639g0030' => 'nta', 'Nn2g11149' => 'nnu', 'Nn2g13389' => 'nnu', 'Nn4g25326' => 'nnu', 'Nn4g26290' => 'nnu', 'Nn5g29865' => 'nnu', 'Oeu004163.1' => 'oeu', 'Oeu006901.1' => 'oeu', 'Oeu010096.1' => 'oeu', 'Oeu024340.1' => 'oeu', 'Oeu048369.1' => 'oeu', 'Os01g0973000' => 'osa', 'Os03g0273800' => 'osa', 'Os03g0701200' => 'osa', 'Os03g0834050' => 'osa', 'Os07g0634400' => 'osa', 'Peaxi162Scf00092g01414' => 'pax', 'Peaxi162Scf00165g00818' => 'pax', 'Peaxi162Scf00309g00516' => 'pax', 'Peaxi162Scf00774g00218' => 'pax', 'PGR004G1824' => 'pgr', 'PGR004G2606' => 'pgr', 'PGR031G2716' => 'pgr', 'PGR102G2460' => 'pgr', 'PGR142G2599' => 'pgr', 'PGSC0003DMG400000843' => 'stu', 'PGSC0003DMG400008829' => 'stu', 'PGSC0003DMG400030418' => 'stu', 'PGSC0003DMG400031834' => 'stu', 'PGSC0003DMG401028300' => 'stu', 'PGSC0003DMG402028300' => 'stu', 'Phvul.001G219300' => 'pvu', 'Phvul.007G056000' => 'pvu', 'Phvul.007G208000' => 'pvu', 'Phvul.008G119500' => 'pvu', 'Phvul.010G011200' => 'pvu', 'Phvul.010G014800' => 'pvu', 'Phvul.011G062900' => 'pvu', 'Phvul.L007043' => 'pvu', 'Potri.001G242300' => 'ptr', 'Potri.002G185300' => 'ptr', 'Potri.006G086900' => 'ptr', 'Potri.008G151700' => 'ptr', 'Potri.009G033500' => 'ptr', 'Potri.010G089300' => 'ptr', 'Potri.014G110800' => 'ptr', 'Pp3c27_8130' => 'ppa', 'Pp3c6_27410' => 'ppa', 'PRCOL_00001659' => 'pco', 'PRCOL_00001927' => 'pco', 'PRCOL_00003649' => 'pco', 'Prupe.1G011600' => 'ppe', 'Prupe.3G000800' => 'ppe', 'Prupe.3G001100' => 'ppe', 'Prupe.6G072700' => 'ppe', 'Prupe.6G072800' => 'ppe', 'Prupe.6G257300' => 'ppe', 'Prupe.8G033000' => 'ppe', 'Psat0s2633g0080' => 'psa', 'Psat0s3396g0080' => 'psa', 'Psat0s3396g0200' => 'psa', 'Psat3g139080' => 'psa', 'Psat5g285080' => 'psa', 'Psat6g157760' => 'psa', 'Psat6g208440' => 'psa', 'Psat7g215320' => 'psa', 'Psat7g215400' => 'psa', 'Psat7g235600' => 'psa', 'Psat7g235760' => 'psa', 'PSO063G4603' => 'pso', 'PSO210G0182' => 'pso', 'PSO210G0196' => 'pso', 'PSO339G0394' => 'pso', 'PSO339G4127' => 'pso', 'PSO513G0064' => 'pso', 'PSO761G0079' => 'pso', 'QL01p031003' => 'qlo', 'QL01p031078' => 'qlo', 'QL06p003004' => 'qlo', 'QL07p048731' => 'qlo', 'QL09p037427' => 'qlo', 'RcHm_v2.0_Chr3g0466361' => 'rch', 'RcHm_v2.0_Chr3g0485571' => 'rch', 'RcHm_v2.0_Chr4g0416551' => 'rch', 'RcHm_v2.0_Chr5g0065831' => 'rch', 'Rhsim01G0230500' => 'rsi', 'Rhsim05G0194000' => 'rsi', 'Rhsim08G0250400' => 'rsi', 'Sabra02G0131000' => 'sbr', 'Sabra06G0066300' => 'sbr', 'Sabra08G0115500' => 'sbr', 'Sabra09G0023900' => 'sbr', 'Sabra10G0054000' => 'sbr', 'Sabra14G0081500' => 'sbr', 'Sabra16G0147100' => 'sbr', 'SalBow2G2957' => 'sbo', 'SalBow4G3320' => 'sbo', 'SalBow8G1894' => 'sbo', 'Sc07g0007950' => 'sci', 'Sc12g0001360' => 'sci', 'Sc13g0004330' => 'sci', 'Sc20g0005010' => 'sci', 'Sed0000361' => 'sed', 'Sed0001706' => 'sed', 'Sed0002422' => 'sed', 'Sed0004029' => 'sed', 'Sed0004602' => 'sed', 'Sed0004943' => 'sed', 'Sed0008646' => 'sed', 'Sed0023313' => 'sed', 'Sed0024843' => 'sed', 'SEGI_00081' => 'sgi', 'SEGI_00947' => 'sgi', 'SEGI_04046' => 'sgi', 'SEGI_06880' => 'sgi', 'SEGI_09736' => 'sgi', 'SEGI_12741' => 'sgi', 'SEGI_14530' => 'sgi', 'SEGI_20705' => 'sgi', 'SEGI_26088' => 'sgi', 'SEGI_28323' => 'sgi', 'SEGI_33343' => 'sgi', 'SGA_v2.0_scaffold126G33775' => 'sas', 'SGA_v2.0_scaffold2G01337' => 'sas', 'SGA_v2.0_scaffold38G15006' => 'sas', 'SGA_v2.0_scaffold39G15264' => 'sas', 'SGA_v2.0_scaffold453G51880' => 'sas', 'SHI12696' => 'shi', 'SMO367G1096' => 'smo', 'Solyc01g068630.3' => 'sly', 'Solyc05g011880.3' => 'sly', 'Solyc06g076300.3' => 'sly', 'Solyc09g010940.4' => 'sly', 'Solyc09g075890.3' => 'sly', 'Sopen01g030560' => 'spe', 'Sopen05g006630' => 'spe', 'Sopen06g032720' => 'spe', 'Sopen09g005660' => 'spe', 'Sopen09g030690' => 'spe', 'Sp4g14540' => 'spa', 'Sp4g20030' => 'spa', 'Sp5g01320' => 'spa', 'Sp6g21170' => 'spa', 'Sp6g21180' => 'spa', 'Sp6g21190' => 'spa', 'Sp6g40220' => 'spa', 'TAR362G0122' => 'tar', 'TAR362G1338' => 'tar', 'TAR369G0590' => 'tar', 'TAR371G0824' => 'tar', 'TAR622G1429' => 'tar', 'TAR623G0734' => 'tar', 'TAR625G0441' => 'tar', 'TAR629G0976' => 'tar', 'TAR633G1195' => 'tar', 'TAR636G2660' => 'tar', 'THA.LOC104799440' => 'tha', 'THA.LOC104800966' => 'tha', 'THA.LOC104806559' => 'tha', 'THA.LOC104810765' => 'tha', 'THA.LOC104816266' => 'tha', 'THA.LOC104817419' => 'tha', 'THA.LOC104827021' => 'tha', 'Thecc.01G327400' => 'tca', 'Thecc.04G229200' => 'tca', 'Thecc.05G037400' => 'tca', 'Thecc.09G318600' => 'tca', 'Thecc.09G318700' => 'tca', 'Thhalv10006238m.g' => 'esa', 'Thhalv10014321m.g' => 'esa', 'Thhalv10014335m.g' => 'esa', 'Thhalv10015826m.g' => 'esa', 'Thhalv10017107m.g' => 'esa', 'Thhalv10017180m.g' => 'esa', 'Thhalv10029339m.g' => 'esa', 'TPR.G1699' => 'tpr', 'TPR.G23609' => 'tpr', 'TPR.G3081' => 'tpr', 'TPR.G40397' => 'tpr', 'TPR.G5522' => 'tpr', 'TPR.G5618' => 'tpr', 'TPR.G5626' => 'tpr', 'TWI09G1632' => 'twi', 'TWI23G1230' => 'twi', 'TWI53G1064' => 'twi', 'TWI59G0751' => 'twi', 'TWI74G0947' => 'twi', 'TWI77G0337' => 'twi', 'TWI79G1254' => 'twi', 'unitig_0.g2341' => 'ugi', 'unitig_26.g10006' => 'ugi', 'unitig_26.g10008' => 'ugi', 'unitig_26.g9192' => 'ugi', 'vmacro14547' => 'vma', 'vmacro15333' => 'vma', 'vmacro18743' => 'vma', 'vmacro20166' => 'vma', 'VMungo0331G0523' => 'vmu', 'VMungo0331G1202' => 'vmu', 'VMungo0720G1228' => 'vmu', 'VMungo0720G1514' => 'vmu', 'VMungo1080G0169' => 'vmu', 'VMungo1127G1475' => 'vmu', 'VMungo1383G1208' => 'vmu', 'VMungo1383G1698' => 'vmu', 'Zm00001eb012270' => 'zma', 'Zm00001eb054100' => 'zma', 'Zm00001eb063350' => 'zma', 'Zm00001eb328560' => 'zma', 'Zm00001eb342820' => 'zma', 'Zm00001eb362210' => 'zma', 'Zm00001eb397730' => 'zma', 'Zm00001eb399750' => 'zma' ), 'gf_id' => 'HOM05D000959', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000959' ), 'data_identifier' => 'HOM05D000959', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000959', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '622', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p07100' => 'bna', 'A03p11720' => 'bna', 'A05p08300' => 'bna', 'A05p13380' => 'bna', 'A09p54130' => 'bna', 'A10p16690' => 'bna', 'A10p16700' => 'bna', 'A10p33390' => 'bna', 'Aa31LG10G16020' => 'aar', 'Aa31LG1G11810' => 'aar', 'Aa31LG1G11830' => 'aar', 'Aa31LG1G22510' => 'aar', 'Aa31LG5G4890' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5793' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2310' => 'aag', 'Actinidia08499' => 'ach', 'Actinidia11262' => 'ach', 'Actinidia23926' => 'ach', 'Actinidia34420' => 'ach', 'Actinidia36970' => 'ach', 'Ah.02g111220' => 'amhyb', 'Ah.15g097750' => 'amhyb', 'AL4G27500' => 'aly', 'AL6G11470' => 'aly', 'AL8G35950' => 'aly', 'AL8G35960' => 'aly', 'AL8G35970' => 'aly', 'Aqoxy1G00912' => 'aox', 'Aqoxy2G02253' => 'aox', 'Aqoxy2G02411' => 'aox', 'Aqoxy5G00485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BZ66YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K8ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM4FUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6BF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HFV7XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25JBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0YNNV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MAKK6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P70IT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP2Z6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V61LZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YWP64R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3S9AI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7PGHH' => 'arhy', 'AT2G32150' => 'ath', 'AT3G62040' => 'ath', 'AT5G02230' => 'ath', 'AT5G59480' => 'ath', 'AT5G59490' => 'ath', 'ATR0332G060' => 'atr', 'ATR0559G190' => 'atr', 'ATR0693G294' => 'atr', 'Atru.chr3.3975' => 'acertr', 'Atru.chr3.3976' => 'acertr', 'Atru.chr3.3977' => 'acertr', 'Atru.chr4.2498' => 'acertr', 'Atru.chr5.838' => 'acertr', 'Atru.chr8.1990' => 'acertr', 'Atru.chr8.1991' => 'acertr', 'Atru.chr8.1992' => 'acertr', 'AUR62001759' => 'cqu', 'AUR62009545' => 'cqu', 'AUR62010474' => 'cqu', 'AUR62025820' => 'cqu', 'AUR62030422' => 'cqu', 'AUR62033605' => 'cqu', 'AUR62038615' => 'cqu', 'AUR62041347' => 'cqu', 'BcaB01g04574' => 'bca', 'BcaB02g09263' => 'bca', 'BcaB02g10453' => 'bca', 'BcaB05g22513' => 'bca', 'BcaB08g36253' => 'bca', 'BcaB08g36254' => 'bca', 'BcaC01g06519' => 'bca', 'BcaC02g11889' => 'bca', 'BcaC03g14010' => 'bca', 'BcaC03g18439' => 'bca', 'BcaC04g19765' => 'bca', 'BcaC09g48432' => 'bca', 'BcaNung07302' => 'bca', 'BolC2t06040H' => 'bol', 'BolC2t07346H' => 'bol', 'BolC3t13817H' => 'bol', 'BolC4t22625H' => 'bol', 'BolC4t23297H' => 'bol', 'BolC8t51278H' => 'bol', 'BolC9t58050H' => 'bol', 'BolC9t58051H' => 'bol', 'BolC9t60163H' => 'bol', 'BraA02t04712Z' => 'bra', 'BraA02t05791Z' => 'bra', 'BraA03t10483Z' => 'bra', 'BraA05t19795Z' => 'bra', 'BraA05t20276Z' => 'bra', 'BraA09t40827Z' => 'bra', 'BraA10t43750Z' => 'bra', 'BraA10t43751Z' => 'bra', 'BraA10t45370Z' => 'bra', 'C02p00400' => 'bna', 'C02p12460' => 'bna', 'C03p13680' => 'bna', 'C04p10270' => 'bna', 'C04p17500' => 'bna', 'C08p37010' => 'bna', 'C09p51880' => 'bna', 'C09p51890' => 'bna', 'C09p74300' => 'bna', 'CAN.G179.26' => 'can', 'CAN.G3384.1' => 'can', 'CAN.G394.68' => 'can', 'CAN.G907.13' => 'can', 'CANSAT11G0012' => 'cansat', 'CANSAT25G1586' => 'cansat', 'CANSAT35G0735' => 'cansat', 'CANSAT54G0556' => 'cansat', 'CANSAT64G0356' => 'cansat', 'CANSAT78G2042' => 'cansat', 'CARHR125920' => 'chi', 'CARHR131910' => 'chi', 'CARHR172390' => 'chi', 'CARHR211140' => 'chi', 'CARHR285850' => 'chi', 'CARHR285860' => 'chi', 'Carub.0004s1347' => 'cru', 'Carub.0004s1960' => 'cru', 'Carub.0005s2880' => 'cru', 'Carub.0006s0107' => 'cru', 'Carub.0008s2015' => 'cru', 'Carub.0008s2016' => 'cru', 'Carub.0008s2017' => 'cru', 'Ca_01315_v3' => 'car', 'Ca_05063_v3' => 'car', 'Ca_10231_v3' => 'car', 'Ca_10913_v3' => 'car', 'Ca_19156_v3' => 'car', 'Ca_23644_v3' => 'car', 'Ca_26735_v3' => 'car', 'Cc01_g13130' => 'ccan', 'Cc02_g21690' => 'ccan', 'Cc03_g03600' => 'ccan', 'Cc06_g02510' => 'ccan', 'CDE02G1265' => 'cde', 'CDE05G0415' => 'cde', 'CDE08G1082' => 'cde', 'Cfa005780' => 'cfa', 'Cfa011522' => 'cfa', 'Cfa011523' => 'cfa', 'Cfa015627' => 'cfa', 'Cfa017359' => 'cfa', 'Ciclev10005687m.g' => 'ccl', 'Ciclev10012173m.g' => 'ccl', 'Ciclev10021621m.g' => 'ccl', 'Ciclev10028968m.g' => 'ccl', 'Ciclev10029907m.g' => 'ccl', 'CiPaw.01G164800' => 'cil', 'CiPaw.07G083700' => 'cil', 'CiPaw.07G127000' => 'cil', 'CiPaw.07G136900' => 'cil', 'CiPaw.08G081700' => 'cil', 'CiPaw.09G194600' => 'cil', 'CiPaw.10G146500' => 'cil', 'CiPaw.13G091500' => 'cil', 'CiPaw.13G091600' => 'cil', 'ClCG00G003390' => 'cla', 'ClCG01G007220' => 'cla', 'ClCG03G001370' => 'cla', 'ClCG04G008100' => 'cla', 'ClCG06G006110' => 'cla', 'ClCG06G006130' => 'cla', 'ClCG10G021210' => 'cla', 'COL.COLO4_07648' => 'col', 'COL.COLO4_07650' => 'col', 'COL.COLO4_07651' => 'col', 'COL.COLO4_14780' => 'col', 'COL.COLO4_18546' => 'col', 'COL.COLO4_18547' => 'col', 'COL.COLO4_23103' => 'col', 'COL.COLO4_30419' => 'col', 'COL.COLO4_34232' => 'col', 'Cpa.g.sc169.20' => 'cpa', 'Cpa.g.sc57.45' => 'cpa', 'Cpa.g.sc58.124' => 'cpa', 'Cpa.g.sc58.125' => 'cpa', 'Cpa.g.sc81.118' => 'cpa', 'Cpa.g.sc81.119' => 'cpa', 'Cre12.g524700' => 'cre', 'CsaV3_1G034430' => 'csa', 'CsaV3_1G034440' => 'csa', 'CsaV3_1G034450' => 'csa', 'CsaV3_3G034830' => 'csa', 'CsaV3_4G025090' => 'csa', 'CsaV3_5G018660' => 'csa', 'CsaV3_6G038160' => 'csa', 'CSS0003447' => 'camsi', 'CSS0017840' => 'camsi', 'CSS0019260' => 'camsi', 'CSS0040375' => 'camsi', 'CSS0042533' => 'camsi', 'DCAR_005960' => 'dca', 'DCAR_012104' => 'dca', 'DCAR_012105' => 'dca', 'DCAR_012293' => 'dca', 'DCAR_015632' => 'dca', 'DCAR_024602' => 'dca', 'DCAR_028752' => 'dca', 'Dinv06261' => 'din', 'Dinv13982' => 'din', 'Dinv17029' => 'din', 'Dinv18463' => 'din', 'Dinv33181' => 'din', 'Dinv35585' => 'din', 'Dinv37161' => 'din', 'Dinv42977' => 'din', 'Dinv43122' => 'din', 'Dinv44517' => 'din', 'Duzib093G0256' => 'dzi', 'Duzib106G1254' => 'dzi', 'Duzib128G1789' => 'dzi', 'Duzib133G0633' => 'dzi', 'Duzib138G0510' => 'dzi', 'Duzib150G1084' => 'dzi', 'Duzib168G0488' => 'dzi', 'Duzib168G1523' => 'dzi', 'Duzib170G0133' => 'dzi', 'ECA234G1433' => 'eca', 'ECA236G1432' => 'eca', 'ECA236G2256' => 'eca', 'ECA236G2365' => 'eca', 'ECA236G4830' => 'eca', 'ECA248G1505' => 'eca', 'EL10Ac3g06431' => 'bvu', 'EL10Ac5g12577' => 'bvu', 'EL10Ac6g13533' => 'bvu', 'EL10Ac7g16045' => 'bvu', 'Eucgr.A01281' => 'egr', 'Eucgr.B02326' => 'egr', 'Eucgr.H03532' => 'egr', 'Eucgr.K00553' => 'egr', 'Eucgr.K03116' => 'egr', 'FAN02G3963' => 'fan', 'FAN05G0438' => 'fan', 'FAN09G2434' => 'fan', 'FAN12G3984' => 'fan', 'FAN14G0798' => 'fan', 'FAN17G0652' => 'fan', 'FAN19G1988' => 'fan', 'FAN22G0632' => 'fan', 'FAN23G0387' => 'fan', 'FAN26G1323' => 'fan', 'FAN28G0666' => 'fan', 'FvH4_1g26080' => 'fve', 'FvH4_3g36780' => 'fve', 'FvH4_4g15270' => 'fve', 'FvH4_6g13490' => 'fve', 'Glyma.01G098700' => 'gma', 'Glyma.03G065900' => 'gma', 'Glyma.03G073754' => 'gma', 'Glyma.03G073758' => 'gma', 'Glyma.03G083200' => 'gma', 'Glyma.03G225500' => 'gma', 'Glyma.05G037766' => 'gma', 'Glyma.07G133500' => 'gma', 'Glyma.10G139400' => 'gma', 'Glyma.10G248900' => 'gma', 'Glyma.11G137800' => 'gma', 'Glyma.12G061300' => 'gma', 'Glyma.13G337900' => 'gma', 'Glyma.15G036600' => 'gma', 'Glyma.18G182800' => 'gma', 'Glyma.19G222500' => 'gma', 'Glyma.20G144800' => 'gma', 'Gohir.A01G222000' => 'ghi', 'Gohir.A03G044000' => 'ghi', 'Gohir.A03G044100' => 'ghi', 'Gohir.A04G083100' => 'ghi', 'Gohir.A07G127200' => 'ghi', 'Gohir.A07G132400' => 'ghi', 'Gohir.A08G000700' => 'ghi', 'Gohir.A11G327300' => 'ghi', 'Gohir.D01G211500' => 'ghi', 'Gohir.D03G123400' => 'ghi', 'Gohir.D03G123500' => 'ghi', 'Gohir.D04G121800' => 'ghi', 'Gohir.D07G131500' => 'ghi', 'Gohir.D07G136600' => 'ghi', 'Gohir.D08G011600' => 'ghi', 'Gohir.D11G346200' => 'ghi', 'Gorai.001G142800' => 'gra', 'Gorai.001G148700' => 'gra', 'Gorai.002G257300' => 'gra', 'Gorai.003G130000' => 'gra', 'Gorai.003G130100' => 'gra', 'Gorai.004G005300' => 'gra', 'Gorai.007G376500' => 'gra', 'Gorai.012G104700' => 'gra', 'GSVIVG01017946001' => 'vvi', 'GSVIVG01024928001' => 'vvi', 'GSVIVG01028227001' => 'vvi', 'GSVIVG01034151001' => 'vvi', 'HanXRQChr05g0135031' => 'han', 'HanXRQChr05g0135041' => 'han', 'HanXRQChr05g0140021' => 'han', 'HanXRQChr06g0178981' => 'han', 'HanXRQChr07g0188251' => 'han', 'HanXRQChr08g0235311' => 'han', 'HanXRQChr09g0271011' => 'han', 'HanXRQChr10g0293321' => 'han', 'HanXRQChr13g0388171' => 'han', 'Haze_00916' => 'cav', 'Haze_05063' => 'cav', 'Haze_20814' => 'cav', 'Haze_24128' => 'cav', 'Hma1.2p1_0745F.1_g212010' => 'hma', 'Hma1.2p1_0757F.1_g213260' => 'hma', 'Hma1.2p1_0936F.1_g238840' => 'hma', 'Hma1.2p1_1735F.1_g299890' => 'hma', 'Hma1.2p1_1861F.1_g305685' => 'hma', 'HPP92_003397' => 'vpl', 'HPP92_012597' => 'vpl', 'HPP92_015520' => 'vpl', 'HPP92_015539' => 'vpl', 'HPP92_020373' => 'vpl', 'Hund04938' => 'sun', 'Hund10677' => 'sun', 'Hund11033' => 'sun', 'Hund12155' => 'sun', 'Lalb_Chr01g0022551' => 'lal', 'Lalb_Chr03g0042341' => 'lal', 'Lalb_Chr07g0192931' => 'lal', 'Lalb_Chr12g0209551' => 'lal', 'Lalb_Chr19g0125251' => 'lal', 'Lalb_Chr19g0137891' => 'lal', 'Lalb_Chr21g0304641' => 'lal', 'Lalb_Chr21g0309881' => 'lal', 'Lj1A5T12' => 'lonja', 'Lj1C148G10' => 'lonja', 'Lj2A93T83' => 'lonja', 'Lj3A738G68' => 'lonja', 'Lj3C966T1' => 'lonja', 'Lj3g0018958' => 'lja', 'Lj3g0021831' => 'lja', 'Lj3g0025443' => 'lja', 'Lj4g0026809' => 'lja', 'Lj5g0012558' => 'lja', 'Lj5g0021586' => 'lja', 'Lsat_1_v5_gn_5_156840' => 'lsa', 'Lsat_1_v5_gn_8_73460' => 'lsa', 'Lsat_1_v5_gn_8_73481' => 'lsa', 'Lsat_1_v5_gn_9_31601' => 'lsa', 'Lsat_1_v5_gn_9_77320' => 'lsa', 'Manes.01G171300' => 'mes', 'Manes.01G171400' => 'mes', 'Manes.01G236100' => 'mes', 'Manes.02G130500' => 'mes', 'Manes.02G130600' => 'mes', 'Manes.03G180200' => 'mes', 'Manes.05G007000' => 'mes', 'Manes.08G084400' => 'mes', 'Manes.09G092600' => 'mes', 'Manes.15G027900' => 'mes', 'MBI04_g40948_MAGBIO' => 'mbi', 'MBI14_g12123_MAGBIO' => 'mbi', 'MBI18_g28915_MAGBIO' => 'mbi', 'MCO09G053' => 'mco', 'MCO11G782' => 'mco', 'MCO15G215' => 'mco', 'MD03G1088500' => 'mdo', 'MD03G1088600' => 'mdo', 'MD04G1130800' => 'mdo', 'MD09G1291700' => 'mdo', 'MD11G1097500' => 'mdo', 'MD11G1097600' => 'mdo', 'MD12G1143900' => 'mdo', 'MD13G1191400' => 'mdo', 'MD16G1191500' => 'mdo', 'Medtr1g085570' => 'mtr', 'Medtr1g104610' => 'mtr', 'Medtr2g097520' => 'mtr', 'Medtr4g021800' => 'mtr', 'Medtr4g021825' => 'mtr', 'Medtr4g064270' => 'mtr', 'Medtr4g064380' => 'mtr', 'Medtr7g062150' => 'mtr', 'MELO3C003138.2' => 'cme', 'MELO3C005187.2' => 'cme', 'MELO3C009252.2' => 'cme', 'MELO3C014481.2' => 'cme', 'MELO3C020616.2' => 'cme', 'MELO3C020617.2' => 'cme', 'MELO3C020618.2' => 'cme', 'Migut.G00328' => 'egut', 'Migut.J00320' => 'egut', 'Migut.L01000' => 'egut', 'Migut.L01953' => 'egut', 'MSTRG.10253' => 'ama', 'MSTRG.19077' => 'ama', 'MSTRG.26780' => 'ama', 'MSTRG.4023' => 'ama', 'MSTRG.5655' => 'ama', 'MSTRG.9992' => 'ama', 'Nitab4.5_0000043g0310' => 'nta', 'Nitab4.5_0000463g0080' => 'nta', 'Nitab4.5_0000705g0170' => 'nta', 'Nitab4.5_0001326g0060' => 'nta', 'Nitab4.5_0001628g0030' => 'nta', 'Nitab4.5_0002103g0110' => 'nta', 'Nitab4.5_0002946g0030' => 'nta', 'Nitab4.5_0004639g0030' => 'nta', 'Nn2g11149' => 'nnu', 'Nn2g13389' => 'nnu', 'Nn4g25326' => 'nnu', 'Nn4g26290' => 'nnu', 'Nn5g29865' => 'nnu', 'Oeu004163.1' => 'oeu', 'Oeu006901.1' => 'oeu', 'Oeu010096.1' => 'oeu', 'Oeu024340.1' => 'oeu', 'Oeu048369.1' => 'oeu', 'Os01g0973000' => 'osa', 'Os03g0273800' => 'osa', 'Os03g0701200' => 'osa', 'Os03g0834050' => 'osa', 'Os07g0634400' => 'osa', 'Peaxi162Scf00092g01414' => 'pax', 'Peaxi162Scf00165g00818' => 'pax', 'Peaxi162Scf00309g00516' => 'pax', 'Peaxi162Scf00774g00218' => 'pax', 'PGR004G1824' => 'pgr', 'PGR004G2606' => 'pgr', 'PGR031G2716' => 'pgr', 'PGR102G2460' => 'pgr', 'PGR142G2599' => 'pgr', 'PGSC0003DMG400000843' => 'stu', 'PGSC0003DMG400008829' => 'stu', 'PGSC0003DMG400030418' => 'stu', 'PGSC0003DMG400031834' => 'stu', 'PGSC0003DMG401028300' => 'stu', 'PGSC0003DMG402028300' => 'stu', 'Phvul.001G219300' => 'pvu', 'Phvul.007G056000' => 'pvu', 'Phvul.007G208000' => 'pvu', 'Phvul.008G119500' => 'pvu', 'Phvul.010G011200' => 'pvu', 'Phvul.010G014800' => 'pvu', 'Phvul.011G062900' => 'pvu', 'Phvul.L007043' => 'pvu', 'Potri.001G242300' => 'ptr', 'Potri.002G185300' => 'ptr', 'Potri.006G086900' => 'ptr', 'Potri.008G151700' => 'ptr', 'Potri.009G033500' => 'ptr', 'Potri.010G089300' => 'ptr', 'Potri.014G110800' => 'ptr', 'Pp3c27_8130' => 'ppa', 'Pp3c6_27410' => 'ppa', 'PRCOL_00001659' => 'pco', 'PRCOL_00001927' => 'pco', 'PRCOL_00003649' => 'pco', 'Prupe.1G011600' => 'ppe', 'Prupe.3G000800' => 'ppe', 'Prupe.3G001100' => 'ppe', 'Prupe.6G072700' => 'ppe', 'Prupe.6G072800' => 'ppe', 'Prupe.6G257300' => 'ppe', 'Prupe.8G033000' => 'ppe', 'Psat0s2633g0080' => 'psa', 'Psat0s3396g0080' => 'psa', 'Psat0s3396g0200' => 'psa', 'Psat3g139080' => 'psa', 'Psat5g285080' => 'psa', 'Psat6g157760' => 'psa', 'Psat6g208440' => 'psa', 'Psat7g215320' => 'psa', 'Psat7g215400' => 'psa', 'Psat7g235600' => 'psa', 'Psat7g235760' => 'psa', 'PSO063G4603' => 'pso', 'PSO210G0182' => 'pso', 'PSO210G0196' => 'pso', 'PSO339G0394' => 'pso', 'PSO339G4127' => 'pso', 'PSO513G0064' => 'pso', 'PSO761G0079' => 'pso', 'QL01p031003' => 'qlo', 'QL01p031078' => 'qlo', 'QL06p003004' => 'qlo', 'QL07p048731' => 'qlo', 'QL09p037427' => 'qlo', 'RcHm_v2.0_Chr3g0466361' => 'rch', 'RcHm_v2.0_Chr3g0485571' => 'rch', 'RcHm_v2.0_Chr4g0416551' => 'rch', 'RcHm_v2.0_Chr5g0065831' => 'rch', 'Rhsim01G0230500' => 'rsi', 'Rhsim05G0194000' => 'rsi', 'Rhsim08G0250400' => 'rsi', 'Sabra02G0131000' => 'sbr', 'Sabra06G0066300' => 'sbr', 'Sabra08G0115500' => 'sbr', 'Sabra09G0023900' => 'sbr', 'Sabra10G0054000' => 'sbr', 'Sabra14G0081500' => 'sbr', 'Sabra16G0147100' => 'sbr', 'SalBow2G2957' => 'sbo', 'SalBow4G3320' => 'sbo', 'SalBow8G1894' => 'sbo', 'Sc07g0007950' => 'sci', 'Sc12g0001360' => 'sci', 'Sc13g0004330' => 'sci', 'Sc20g0005010' => 'sci', 'Sed0000361' => 'sed', 'Sed0001706' => 'sed', 'Sed0002422' => 'sed', 'Sed0004029' => 'sed', 'Sed0004602' => 'sed', 'Sed0004943' => 'sed', 'Sed0008646' => 'sed', 'Sed0023313' => 'sed', 'Sed0024843' => 'sed', 'SEGI_00081' => 'sgi', 'SEGI_00947' => 'sgi', 'SEGI_04046' => 'sgi', 'SEGI_06880' => 'sgi', 'SEGI_09736' => 'sgi', 'SEGI_12741' => 'sgi', 'SEGI_14530' => 'sgi', 'SEGI_20705' => 'sgi', 'SEGI_26088' => 'sgi', 'SEGI_28323' => 'sgi', 'SEGI_33343' => 'sgi', 'SGA_v2.0_scaffold126G33775' => 'sas', 'SGA_v2.0_scaffold2G01337' => 'sas', 'SGA_v2.0_scaffold38G15006' => 'sas', 'SGA_v2.0_scaffold39G15264' => 'sas', 'SGA_v2.0_scaffold453G51880' => 'sas', 'SHI12696' => 'shi', 'SMO367G1096' => 'smo', 'Solyc01g068630.3' => 'sly', 'Solyc05g011880.3' => 'sly', 'Solyc06g076300.3' => 'sly', 'Solyc09g010940.4' => 'sly', 'Solyc09g075890.3' => 'sly', 'Sopen01g030560' => 'spe', 'Sopen05g006630' => 'spe', 'Sopen06g032720' => 'spe', 'Sopen09g005660' => 'spe', 'Sopen09g030690' => 'spe', 'Sp4g14540' => 'spa', 'Sp4g20030' => 'spa', 'Sp5g01320' => 'spa', 'Sp6g21170' => 'spa', 'Sp6g21180' => 'spa', 'Sp6g21190' => 'spa', 'Sp6g40220' => 'spa', 'TAR362G0122' => 'tar', 'TAR362G1338' => 'tar', 'TAR369G0590' => 'tar', 'TAR371G0824' => 'tar', 'TAR622G1429' => 'tar', 'TAR623G0734' => 'tar', 'TAR625G0441' => 'tar', 'TAR629G0976' => 'tar', 'TAR633G1195' => 'tar', 'TAR636G2660' => 'tar', 'THA.LOC104799440' => 'tha', 'THA.LOC104800966' => 'tha', 'THA.LOC104806559' => 'tha', 'THA.LOC104810765' => 'tha', 'THA.LOC104816266' => 'tha', 'THA.LOC104817419' => 'tha', 'THA.LOC104827021' => 'tha', 'Thecc.01G327400' => 'tca', 'Thecc.04G229200' => 'tca', 'Thecc.05G037400' => 'tca', 'Thecc.09G318600' => 'tca', 'Thecc.09G318700' => 'tca', 'Thhalv10006238m.g' => 'esa', 'Thhalv10014321m.g' => 'esa', 'Thhalv10014335m.g' => 'esa', 'Thhalv10015826m.g' => 'esa', 'Thhalv10017107m.g' => 'esa', 'Thhalv10017180m.g' => 'esa', 'Thhalv10029339m.g' => 'esa', 'TPR.G1699' => 'tpr', 'TPR.G23609' => 'tpr', 'TPR.G3081' => 'tpr', 'TPR.G40397' => 'tpr', 'TPR.G5522' => 'tpr', 'TPR.G5618' => 'tpr', 'TPR.G5626' => 'tpr', 'TWI09G1632' => 'twi', 'TWI23G1230' => 'twi', 'TWI53G1064' => 'twi', 'TWI59G0751' => 'twi', 'TWI74G0947' => 'twi', 'TWI77G0337' => 'twi', 'TWI79G1254' => 'twi', 'unitig_0.g2341' => 'ugi', 'unitig_26.g10006' => 'ugi', 'unitig_26.g10008' => 'ugi', 'unitig_26.g9192' => 'ugi', 'vmacro14547' => 'vma', 'vmacro15333' => 'vma', 'vmacro18743' => 'vma', 'vmacro20166' => 'vma', 'VMungo0331G0523' => 'vmu', 'VMungo0331G1202' => 'vmu', 'VMungo0720G1228' => 'vmu', 'VMungo0720G1514' => 'vmu', 'VMungo1080G0169' => 'vmu', 'VMungo1127G1475' => 'vmu', 'VMungo1383G1208' => 'vmu', 'VMungo1383G1698' => 'vmu', 'Zm00001eb012270' => 'zma', 'Zm00001eb054100' => 'zma', 'Zm00001eb063350' => 'zma', 'Zm00001eb328560' => 'zma', 'Zm00001eb342820' => 'zma', 'Zm00001eb362210' => 'zma', 'Zm00001eb397730' => 'zma', 'Zm00001eb399750' => 'zma' ) $gf_id = 'HOM05D000959' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000959' ) $data_identifier = 'HOM05D000959' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 5, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 5, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 10, 'mbi' => (int) 3, 'mco' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 2, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 3, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 11, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399750' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000959', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '622', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p07100' => 'bna', 'A03p11720' => 'bna', 'A05p08300' => 'bna', 'A05p13380' => 'bna', 'A09p54130' => 'bna', 'A10p16690' => 'bna', 'A10p16700' => 'bna', 'A10p33390' => 'bna', 'Aa31LG10G16020' => 'aar', 'Aa31LG1G11810' => 'aar', 'Aa31LG1G11830' => 'aar', 'Aa31LG1G22510' => 'aar', 'Aa31LG5G4890' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5793' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2310' => 'aag', 'Actinidia08499' => 'ach', 'Actinidia11262' => 'ach', 'Actinidia23926' => 'ach', 'Actinidia34420' => 'ach', 'Actinidia36970' => 'ach', 'Ah.02g111220' => 'amhyb', 'Ah.15g097750' => 'amhyb', 'AL4G27500' => 'aly', 'AL6G11470' => 'aly', 'AL8G35950' => 'aly', 'AL8G35960' => 'aly', 'AL8G35970' => 'aly', 'Aqoxy1G00912' => 'aox', 'Aqoxy2G02253' => 'aox', 'Aqoxy2G02411' => 'aox', 'Aqoxy5G00485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BZ66YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K8ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM4FUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6BF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HFV7XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25JBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0YNNV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MAKK6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P70IT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP2Z6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V61LZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YWP64R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3S9AI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7PGHH' => 'arhy', 'AT2G32150' => 'ath', 'AT3G62040' => 'ath', 'AT5G02230' => 'ath', 'AT5G59480' => 'ath', 'AT5G59490' => 'ath', 'ATR0332G060' => 'atr', 'ATR0559G190' => 'atr', 'ATR0693G294' => 'atr', 'Atru.chr3.3975' => 'acertr', 'Atru.chr3.3976' => 'acertr', 'Atru.chr3.3977' => 'acertr', 'Atru.chr4.2498' => 'acertr', 'Atru.chr5.838' => 'acertr', 'Atru.chr8.1990' => 'acertr', 'Atru.chr8.1991' => 'acertr', 'Atru.chr8.1992' => 'acertr', 'AUR62001759' => 'cqu', 'AUR62009545' => 'cqu', 'AUR62010474' => 'cqu', 'AUR62025820' => 'cqu', 'AUR62030422' => 'cqu', 'AUR62033605' => 'cqu', 'AUR62038615' => 'cqu', 'AUR62041347' => 'cqu', 'BcaB01g04574' => 'bca', 'BcaB02g09263' => 'bca', 'BcaB02g10453' => 'bca', 'BcaB05g22513' => 'bca', 'BcaB08g36253' => 'bca', 'BcaB08g36254' => 'bca', 'BcaC01g06519' => 'bca', 'BcaC02g11889' => 'bca', 'BcaC03g14010' => 'bca', 'BcaC03g18439' => 'bca', 'BcaC04g19765' => 'bca', 'BcaC09g48432' => 'bca', 'BcaNung07302' => 'bca', 'BolC2t06040H' => 'bol', 'BolC2t07346H' => 'bol', 'BolC3t13817H' => 'bol', 'BolC4t22625H' => 'bol', 'BolC4t23297H' => 'bol', 'BolC8t51278H' => 'bol', 'BolC9t58050H' => 'bol', 'BolC9t58051H' => 'bol', 'BolC9t60163H' => 'bol', 'BraA02t04712Z' => 'bra', 'BraA02t05791Z' => 'bra', 'BraA03t10483Z' => 'bra', 'BraA05t19795Z' => 'bra', 'BraA05t20276Z' => 'bra', 'BraA09t40827Z' => 'bra', 'BraA10t43750Z' => 'bra', 'BraA10t43751Z' => 'bra', 'BraA10t45370Z' => 'bra', 'C02p00400' => 'bna', 'C02p12460' => 'bna', 'C03p13680' => 'bna', 'C04p10270' => 'bna', 'C04p17500' => 'bna', 'C08p37010' => 'bna', 'C09p51880' => 'bna', 'C09p51890' => 'bna', 'C09p74300' => 'bna', 'CAN.G179.26' => 'can', 'CAN.G3384.1' => 'can', 'CAN.G394.68' => 'can', 'CAN.G907.13' => 'can', 'CANSAT11G0012' => 'cansat', 'CANSAT25G1586' => 'cansat', 'CANSAT35G0735' => 'cansat', 'CANSAT54G0556' => 'cansat', 'CANSAT64G0356' => 'cansat', 'CANSAT78G2042' => 'cansat', 'CARHR125920' => 'chi', 'CARHR131910' => 'chi', 'CARHR172390' => 'chi', 'CARHR211140' => 'chi', 'CARHR285850' => 'chi', 'CARHR285860' => 'chi', 'Carub.0004s1347' => 'cru', 'Carub.0004s1960' => 'cru', 'Carub.0005s2880' => 'cru', 'Carub.0006s0107' => 'cru', 'Carub.0008s2015' => 'cru', 'Carub.0008s2016' => 'cru', 'Carub.0008s2017' => 'cru', 'Ca_01315_v3' => 'car', 'Ca_05063_v3' => 'car', 'Ca_10231_v3' => 'car', 'Ca_10913_v3' => 'car', 'Ca_19156_v3' => 'car', 'Ca_23644_v3' => 'car', 'Ca_26735_v3' => 'car', 'Cc01_g13130' => 'ccan', 'Cc02_g21690' => 'ccan', 'Cc03_g03600' => 'ccan', 'Cc06_g02510' => 'ccan', 'CDE02G1265' => 'cde', 'CDE05G0415' => 'cde', 'CDE08G1082' => 'cde', 'Cfa005780' => 'cfa', 'Cfa011522' => 'cfa', 'Cfa011523' => 'cfa', 'Cfa015627' => 'cfa', 'Cfa017359' => 'cfa', 'Ciclev10005687m.g' => 'ccl', 'Ciclev10012173m.g' => 'ccl', 'Ciclev10021621m.g' => 'ccl', 'Ciclev10028968m.g' => 'ccl', 'Ciclev10029907m.g' => 'ccl', 'CiPaw.01G164800' => 'cil', 'CiPaw.07G083700' => 'cil', 'CiPaw.07G127000' => 'cil', 'CiPaw.07G136900' => 'cil', 'CiPaw.08G081700' => 'cil', 'CiPaw.09G194600' => 'cil', 'CiPaw.10G146500' => 'cil', 'CiPaw.13G091500' => 'cil', 'CiPaw.13G091600' => 'cil', 'ClCG00G003390' => 'cla', 'ClCG01G007220' => 'cla', 'ClCG03G001370' => 'cla', 'ClCG04G008100' => 'cla', 'ClCG06G006110' => 'cla', 'ClCG06G006130' => 'cla', 'ClCG10G021210' => 'cla', 'COL.COLO4_07648' => 'col', 'COL.COLO4_07650' => 'col', 'COL.COLO4_07651' => 'col', 'COL.COLO4_14780' => 'col', 'COL.COLO4_18546' => 'col', 'COL.COLO4_18547' => 'col', 'COL.COLO4_23103' => 'col', 'COL.COLO4_30419' => 'col', 'COL.COLO4_34232' => 'col', 'Cpa.g.sc169.20' => 'cpa', 'Cpa.g.sc57.45' => 'cpa', 'Cpa.g.sc58.124' => 'cpa', 'Cpa.g.sc58.125' => 'cpa', 'Cpa.g.sc81.118' => 'cpa', 'Cpa.g.sc81.119' => 'cpa', 'Cre12.g524700' => 'cre', 'CsaV3_1G034430' => 'csa', 'CsaV3_1G034440' => 'csa', 'CsaV3_1G034450' => 'csa', 'CsaV3_3G034830' => 'csa', 'CsaV3_4G025090' => 'csa', 'CsaV3_5G018660' => 'csa', 'CsaV3_6G038160' => 'csa', 'CSS0003447' => 'camsi', 'CSS0017840' => 'camsi', 'CSS0019260' => 'camsi', 'CSS0040375' => 'camsi', 'CSS0042533' => 'camsi', 'DCAR_005960' => 'dca', 'DCAR_012104' => 'dca', 'DCAR_012105' => 'dca', 'DCAR_012293' => 'dca', 'DCAR_015632' => 'dca', 'DCAR_024602' => 'dca', 'DCAR_028752' => 'dca', 'Dinv06261' => 'din', 'Dinv13982' => 'din', 'Dinv17029' => 'din', 'Dinv18463' => 'din', 'Dinv33181' => 'din', 'Dinv35585' => 'din', 'Dinv37161' => 'din', 'Dinv42977' => 'din', 'Dinv43122' => 'din', 'Dinv44517' => 'din', 'Duzib093G0256' => 'dzi', 'Duzib106G1254' => 'dzi', 'Duzib128G1789' => 'dzi', 'Duzib133G0633' => 'dzi', 'Duzib138G0510' => 'dzi', 'Duzib150G1084' => 'dzi', 'Duzib168G0488' => 'dzi', 'Duzib168G1523' => 'dzi', 'Duzib170G0133' => 'dzi', 'ECA234G1433' => 'eca', 'ECA236G1432' => 'eca', 'ECA236G2256' => 'eca', 'ECA236G2365' => 'eca', 'ECA236G4830' => 'eca', 'ECA248G1505' => 'eca', 'EL10Ac3g06431' => 'bvu', 'EL10Ac5g12577' => 'bvu', 'EL10Ac6g13533' => 'bvu', 'EL10Ac7g16045' => 'bvu', 'Eucgr.A01281' => 'egr', 'Eucgr.B02326' => 'egr', 'Eucgr.H03532' => 'egr', 'Eucgr.K00553' => 'egr', 'Eucgr.K03116' => 'egr', 'FAN02G3963' => 'fan', 'FAN05G0438' => 'fan', 'FAN09G2434' => 'fan', 'FAN12G3984' => 'fan', 'FAN14G0798' => 'fan', 'FAN17G0652' => 'fan', 'FAN19G1988' => 'fan', 'FAN22G0632' => 'fan', 'FAN23G0387' => 'fan', 'FAN26G1323' => 'fan', 'FAN28G0666' => 'fan', 'FvH4_1g26080' => 'fve', 'FvH4_3g36780' => 'fve', 'FvH4_4g15270' => 'fve', 'FvH4_6g13490' => 'fve', 'Glyma.01G098700' => 'gma', 'Glyma.03G065900' => 'gma', 'Glyma.03G073754' => 'gma', 'Glyma.03G073758' => 'gma', 'Glyma.03G083200' => 'gma', 'Glyma.03G225500' => 'gma', 'Glyma.05G037766' => 'gma', 'Glyma.07G133500' => 'gma', 'Glyma.10G139400' => 'gma', 'Glyma.10G248900' => 'gma', 'Glyma.11G137800' => 'gma', 'Glyma.12G061300' => 'gma', 'Glyma.13G337900' => 'gma', 'Glyma.15G036600' => 'gma', 'Glyma.18G182800' => 'gma', 'Glyma.19G222500' => 'gma', 'Glyma.20G144800' => 'gma', 'Gohir.A01G222000' => 'ghi', 'Gohir.A03G044000' => 'ghi', 'Gohir.A03G044100' => 'ghi', 'Gohir.A04G083100' => 'ghi', 'Gohir.A07G127200' => 'ghi', 'Gohir.A07G132400' => 'ghi', 'Gohir.A08G000700' => 'ghi', 'Gohir.A11G327300' => 'ghi', 'Gohir.D01G211500' => 'ghi', 'Gohir.D03G123400' => 'ghi', 'Gohir.D03G123500' => 'ghi', 'Gohir.D04G121800' => 'ghi', 'Gohir.D07G131500' => 'ghi', 'Gohir.D07G136600' => 'ghi', 'Gohir.D08G011600' => 'ghi', 'Gohir.D11G346200' => 'ghi', 'Gorai.001G142800' => 'gra', 'Gorai.001G148700' => 'gra', 'Gorai.002G257300' => 'gra', 'Gorai.003G130000' => 'gra', 'Gorai.003G130100' => 'gra', 'Gorai.004G005300' => 'gra', 'Gorai.007G376500' => 'gra', 'Gorai.012G104700' => 'gra', 'GSVIVG01017946001' => 'vvi', 'GSVIVG01024928001' => 'vvi', 'GSVIVG01028227001' => 'vvi', 'GSVIVG01034151001' => 'vvi', 'HanXRQChr05g0135031' => 'han', 'HanXRQChr05g0135041' => 'han', 'HanXRQChr05g0140021' => 'han', 'HanXRQChr06g0178981' => 'han', 'HanXRQChr07g0188251' => 'han', 'HanXRQChr08g0235311' => 'han', 'HanXRQChr09g0271011' => 'han', 'HanXRQChr10g0293321' => 'han', 'HanXRQChr13g0388171' => 'han', 'Haze_00916' => 'cav', 'Haze_05063' => 'cav', 'Haze_20814' => 'cav', 'Haze_24128' => 'cav', 'Hma1.2p1_0745F.1_g212010' => 'hma', 'Hma1.2p1_0757F.1_g213260' => 'hma', 'Hma1.2p1_0936F.1_g238840' => 'hma', 'Hma1.2p1_1735F.1_g299890' => 'hma', 'Hma1.2p1_1861F.1_g305685' => 'hma', 'HPP92_003397' => 'vpl', 'HPP92_012597' => 'vpl', 'HPP92_015520' => 'vpl', 'HPP92_015539' => 'vpl', 'HPP92_020373' => 'vpl', 'Hund04938' => 'sun', 'Hund10677' => 'sun', 'Hund11033' => 'sun', 'Hund12155' => 'sun', 'Lalb_Chr01g0022551' => 'lal', 'Lalb_Chr03g0042341' => 'lal', 'Lalb_Chr07g0192931' => 'lal', 'Lalb_Chr12g0209551' => 'lal', 'Lalb_Chr19g0125251' => 'lal', 'Lalb_Chr19g0137891' => 'lal', 'Lalb_Chr21g0304641' => 'lal', 'Lalb_Chr21g0309881' => 'lal', 'Lj1A5T12' => 'lonja', 'Lj1C148G10' => 'lonja', 'Lj2A93T83' => 'lonja', 'Lj3A738G68' => 'lonja', 'Lj3C966T1' => 'lonja', 'Lj3g0018958' => 'lja', 'Lj3g0021831' => 'lja', 'Lj3g0025443' => 'lja', 'Lj4g0026809' => 'lja', 'Lj5g0012558' => 'lja', 'Lj5g0021586' => 'lja', 'Lsat_1_v5_gn_5_156840' => 'lsa', 'Lsat_1_v5_gn_8_73460' => 'lsa', 'Lsat_1_v5_gn_8_73481' => 'lsa', 'Lsat_1_v5_gn_9_31601' => 'lsa', 'Lsat_1_v5_gn_9_77320' => 'lsa', 'Manes.01G171300' => 'mes', 'Manes.01G171400' => 'mes', 'Manes.01G236100' => 'mes', 'Manes.02G130500' => 'mes', 'Manes.02G130600' => 'mes', 'Manes.03G180200' => 'mes', 'Manes.05G007000' => 'mes', 'Manes.08G084400' => 'mes', 'Manes.09G092600' => 'mes', 'Manes.15G027900' => 'mes', 'MBI04_g40948_MAGBIO' => 'mbi', 'MBI14_g12123_MAGBIO' => 'mbi', 'MBI18_g28915_MAGBIO' => 'mbi', 'MCO09G053' => 'mco', 'MCO11G782' => 'mco', 'MCO15G215' => 'mco', 'MD03G1088500' => 'mdo', 'MD03G1088600' => 'mdo', 'MD04G1130800' => 'mdo', 'MD09G1291700' => 'mdo', 'MD11G1097500' => 'mdo', 'MD11G1097600' => 'mdo', 'MD12G1143900' => 'mdo', 'MD13G1191400' => 'mdo', 'MD16G1191500' => 'mdo', 'Medtr1g085570' => 'mtr', 'Medtr1g104610' => 'mtr', 'Medtr2g097520' => 'mtr', 'Medtr4g021800' => 'mtr', 'Medtr4g021825' => 'mtr', 'Medtr4g064270' => 'mtr', 'Medtr4g064380' => 'mtr', 'Medtr7g062150' => 'mtr', 'MELO3C003138.2' => 'cme', 'MELO3C005187.2' => 'cme', 'MELO3C009252.2' => 'cme', 'MELO3C014481.2' => 'cme', 'MELO3C020616.2' => 'cme', 'MELO3C020617.2' => 'cme', 'MELO3C020618.2' => 'cme', 'Migut.G00328' => 'egut', 'Migut.J00320' => 'egut', 'Migut.L01000' => 'egut', 'Migut.L01953' => 'egut', 'MSTRG.10253' => 'ama', 'MSTRG.19077' => 'ama', 'MSTRG.26780' => 'ama', 'MSTRG.4023' => 'ama', 'MSTRG.5655' => 'ama', 'MSTRG.9992' => 'ama', 'Nitab4.5_0000043g0310' => 'nta', 'Nitab4.5_0000463g0080' => 'nta', 'Nitab4.5_0000705g0170' => 'nta', 'Nitab4.5_0001326g0060' => 'nta', 'Nitab4.5_0001628g0030' => 'nta', 'Nitab4.5_0002103g0110' => 'nta', 'Nitab4.5_0002946g0030' => 'nta', 'Nitab4.5_0004639g0030' => 'nta', 'Nn2g11149' => 'nnu', 'Nn2g13389' => 'nnu', 'Nn4g25326' => 'nnu', 'Nn4g26290' => 'nnu', 'Nn5g29865' => 'nnu', 'Oeu004163.1' => 'oeu', 'Oeu006901.1' => 'oeu', 'Oeu010096.1' => 'oeu', 'Oeu024340.1' => 'oeu', 'Oeu048369.1' => 'oeu', 'Os01g0973000' => 'osa', 'Os03g0273800' => 'osa', 'Os03g0701200' => 'osa', 'Os03g0834050' => 'osa', 'Os07g0634400' => 'osa', 'Peaxi162Scf00092g01414' => 'pax', 'Peaxi162Scf00165g00818' => 'pax', 'Peaxi162Scf00309g00516' => 'pax', 'Peaxi162Scf00774g00218' => 'pax', 'PGR004G1824' => 'pgr', 'PGR004G2606' => 'pgr', 'PGR031G2716' => 'pgr', 'PGR102G2460' => 'pgr', 'PGR142G2599' => 'pgr', 'PGSC0003DMG400000843' => 'stu', 'PGSC0003DMG400008829' => 'stu', 'PGSC0003DMG400030418' => 'stu', 'PGSC0003DMG400031834' => 'stu', 'PGSC0003DMG401028300' => 'stu', 'PGSC0003DMG402028300' => 'stu', 'Phvul.001G219300' => 'pvu', 'Phvul.007G056000' => 'pvu', 'Phvul.007G208000' => 'pvu', 'Phvul.008G119500' => 'pvu', 'Phvul.010G011200' => 'pvu', 'Phvul.010G014800' => 'pvu', 'Phvul.011G062900' => 'pvu', 'Phvul.L007043' => 'pvu', 'Potri.001G242300' => 'ptr', 'Potri.002G185300' => 'ptr', 'Potri.006G086900' => 'ptr', 'Potri.008G151700' => 'ptr', 'Potri.009G033500' => 'ptr', 'Potri.010G089300' => 'ptr', 'Potri.014G110800' => 'ptr', 'Pp3c27_8130' => 'ppa', 'Pp3c6_27410' => 'ppa', 'PRCOL_00001659' => 'pco', 'PRCOL_00001927' => 'pco', 'PRCOL_00003649' => 'pco', 'Prupe.1G011600' => 'ppe', 'Prupe.3G000800' => 'ppe', 'Prupe.3G001100' => 'ppe', 'Prupe.6G072700' => 'ppe', 'Prupe.6G072800' => 'ppe', 'Prupe.6G257300' => 'ppe', 'Prupe.8G033000' => 'ppe', 'Psat0s2633g0080' => 'psa', 'Psat0s3396g0080' => 'psa', 'Psat0s3396g0200' => 'psa', 'Psat3g139080' => 'psa', 'Psat5g285080' => 'psa', 'Psat6g157760' => 'psa', 'Psat6g208440' => 'psa', 'Psat7g215320' => 'psa', 'Psat7g215400' => 'psa', 'Psat7g235600' => 'psa', 'Psat7g235760' => 'psa', 'PSO063G4603' => 'pso', 'PSO210G0182' => 'pso', 'PSO210G0196' => 'pso', 'PSO339G0394' => 'pso', 'PSO339G4127' => 'pso', 'PSO513G0064' => 'pso', 'PSO761G0079' => 'pso', 'QL01p031003' => 'qlo', 'QL01p031078' => 'qlo', 'QL06p003004' => 'qlo', 'QL07p048731' => 'qlo', 'QL09p037427' => 'qlo', 'RcHm_v2.0_Chr3g0466361' => 'rch', 'RcHm_v2.0_Chr3g0485571' => 'rch', 'RcHm_v2.0_Chr4g0416551' => 'rch', 'RcHm_v2.0_Chr5g0065831' => 'rch', 'Rhsim01G0230500' => 'rsi', 'Rhsim05G0194000' => 'rsi', 'Rhsim08G0250400' => 'rsi', 'Sabra02G0131000' => 'sbr', 'Sabra06G0066300' => 'sbr', 'Sabra08G0115500' => 'sbr', 'Sabra09G0023900' => 'sbr', 'Sabra10G0054000' => 'sbr', 'Sabra14G0081500' => 'sbr', 'Sabra16G0147100' => 'sbr', 'SalBow2G2957' => 'sbo', 'SalBow4G3320' => 'sbo', 'SalBow8G1894' => 'sbo', 'Sc07g0007950' => 'sci', 'Sc12g0001360' => 'sci', 'Sc13g0004330' => 'sci', 'Sc20g0005010' => 'sci', 'Sed0000361' => 'sed', 'Sed0001706' => 'sed', 'Sed0002422' => 'sed', 'Sed0004029' => 'sed', 'Sed0004602' => 'sed', 'Sed0004943' => 'sed', 'Sed0008646' => 'sed', 'Sed0023313' => 'sed', 'Sed0024843' => 'sed', 'SEGI_00081' => 'sgi', 'SEGI_00947' => 'sgi', 'SEGI_04046' => 'sgi', 'SEGI_06880' => 'sgi', 'SEGI_09736' => 'sgi', 'SEGI_12741' => 'sgi', 'SEGI_14530' => 'sgi', 'SEGI_20705' => 'sgi', 'SEGI_26088' => 'sgi', 'SEGI_28323' => 'sgi', 'SEGI_33343' => 'sgi', 'SGA_v2.0_scaffold126G33775' => 'sas', 'SGA_v2.0_scaffold2G01337' => 'sas', 'SGA_v2.0_scaffold38G15006' => 'sas', 'SGA_v2.0_scaffold39G15264' => 'sas', 'SGA_v2.0_scaffold453G51880' => 'sas', 'SHI12696' => 'shi', 'SMO367G1096' => 'smo', 'Solyc01g068630.3' => 'sly', 'Solyc05g011880.3' => 'sly', 'Solyc06g076300.3' => 'sly', 'Solyc09g010940.4' => 'sly', 'Solyc09g075890.3' => 'sly', 'Sopen01g030560' => 'spe', 'Sopen05g006630' => 'spe', 'Sopen06g032720' => 'spe', 'Sopen09g005660' => 'spe', 'Sopen09g030690' => 'spe', 'Sp4g14540' => 'spa', 'Sp4g20030' => 'spa', 'Sp5g01320' => 'spa', 'Sp6g21170' => 'spa', 'Sp6g21180' => 'spa', 'Sp6g21190' => 'spa', 'Sp6g40220' => 'spa', 'TAR362G0122' => 'tar', 'TAR362G1338' => 'tar', 'TAR369G0590' => 'tar', 'TAR371G0824' => 'tar', 'TAR622G1429' => 'tar', 'TAR623G0734' => 'tar', 'TAR625G0441' => 'tar', 'TAR629G0976' => 'tar', 'TAR633G1195' => 'tar', 'TAR636G2660' => 'tar', 'THA.LOC104799440' => 'tha', 'THA.LOC104800966' => 'tha', 'THA.LOC104806559' => 'tha', 'THA.LOC104810765' => 'tha', 'THA.LOC104816266' => 'tha', 'THA.LOC104817419' => 'tha', 'THA.LOC104827021' => 'tha', 'Thecc.01G327400' => 'tca', 'Thecc.04G229200' => 'tca', 'Thecc.05G037400' => 'tca', 'Thecc.09G318600' => 'tca', 'Thecc.09G318700' => 'tca', 'Thhalv10006238m.g' => 'esa', 'Thhalv10014321m.g' => 'esa', 'Thhalv10014335m.g' => 'esa', 'Thhalv10015826m.g' => 'esa', 'Thhalv10017107m.g' => 'esa', 'Thhalv10017180m.g' => 'esa', 'Thhalv10029339m.g' => 'esa', 'TPR.G1699' => 'tpr', 'TPR.G23609' => 'tpr', 'TPR.G3081' => 'tpr', 'TPR.G40397' => 'tpr', 'TPR.G5522' => 'tpr', 'TPR.G5618' => 'tpr', 'TPR.G5626' => 'tpr', 'TWI09G1632' => 'twi', 'TWI23G1230' => 'twi', 'TWI53G1064' => 'twi', 'TWI59G0751' => 'twi', 'TWI74G0947' => 'twi', 'TWI77G0337' => 'twi', 'TWI79G1254' => 'twi', 'unitig_0.g2341' => 'ugi', 'unitig_26.g10006' => 'ugi', 'unitig_26.g10008' => 'ugi', 'unitig_26.g9192' => 'ugi', 'vmacro14547' => 'vma', 'vmacro15333' => 'vma', 'vmacro18743' => 'vma', 'vmacro20166' => 'vma', 'VMungo0331G0523' => 'vmu', 'VMungo0331G1202' => 'vmu', 'VMungo0720G1228' => 'vmu', 'VMungo0720G1514' => 'vmu', 'VMungo1080G0169' => 'vmu', 'VMungo1127G1475' => 'vmu', 'VMungo1383G1208' => 'vmu', 'VMungo1383G1698' => 'vmu', 'Zm00001eb012270' => 'zma', 'Zm00001eb054100' => 'zma', 'Zm00001eb063350' => 'zma', 'Zm00001eb328560' => 'zma', 'Zm00001eb342820' => 'zma', 'Zm00001eb362210' => 'zma', 'Zm00001eb397730' => 'zma', 'Zm00001eb399750' => 'zma' ), 'gf_id' => 'HOM05D000959', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000959' ), 'data_identifier' => 'HOM05D000959', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000959', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '622', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p07100' => 'bna', 'A03p11720' => 'bna', 'A05p08300' => 'bna', 'A05p13380' => 'bna', 'A09p54130' => 'bna', 'A10p16690' => 'bna', 'A10p16700' => 'bna', 'A10p33390' => 'bna', 'Aa31LG10G16020' => 'aar', 'Aa31LG1G11810' => 'aar', 'Aa31LG1G11830' => 'aar', 'Aa31LG1G22510' => 'aar', 'Aa31LG5G4890' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5793' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2310' => 'aag', 'Actinidia08499' => 'ach', 'Actinidia11262' => 'ach', 'Actinidia23926' => 'ach', 'Actinidia34420' => 'ach', 'Actinidia36970' => 'ach', 'Ah.02g111220' => 'amhyb', 'Ah.15g097750' => 'amhyb', 'AL4G27500' => 'aly', 'AL6G11470' => 'aly', 'AL8G35950' => 'aly', 'AL8G35960' => 'aly', 'AL8G35970' => 'aly', 'Aqoxy1G00912' => 'aox', 'Aqoxy2G02253' => 'aox', 'Aqoxy2G02411' => 'aox', 'Aqoxy5G00485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BZ66YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K8ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM4FUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6BF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HFV7XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25JBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0YNNV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MAKK6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P70IT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP2Z6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V61LZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YWP64R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3S9AI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7PGHH' => 'arhy', 'AT2G32150' => 'ath', 'AT3G62040' => 'ath', 'AT5G02230' => 'ath', 'AT5G59480' => 'ath', 'AT5G59490' => 'ath', 'ATR0332G060' => 'atr', 'ATR0559G190' => 'atr', 'ATR0693G294' => 'atr', 'Atru.chr3.3975' => 'acertr', 'Atru.chr3.3976' => 'acertr', 'Atru.chr3.3977' => 'acertr', 'Atru.chr4.2498' => 'acertr', 'Atru.chr5.838' => 'acertr', 'Atru.chr8.1990' => 'acertr', 'Atru.chr8.1991' => 'acertr', 'Atru.chr8.1992' => 'acertr', 'AUR62001759' => 'cqu', 'AUR62009545' => 'cqu', 'AUR62010474' => 'cqu', 'AUR62025820' => 'cqu', 'AUR62030422' => 'cqu', 'AUR62033605' => 'cqu', 'AUR62038615' => 'cqu', 'AUR62041347' => 'cqu', 'BcaB01g04574' => 'bca', 'BcaB02g09263' => 'bca', 'BcaB02g10453' => 'bca', 'BcaB05g22513' => 'bca', 'BcaB08g36253' => 'bca', 'BcaB08g36254' => 'bca', 'BcaC01g06519' => 'bca', 'BcaC02g11889' => 'bca', 'BcaC03g14010' => 'bca', 'BcaC03g18439' => 'bca', 'BcaC04g19765' => 'bca', 'BcaC09g48432' => 'bca', 'BcaNung07302' => 'bca', 'BolC2t06040H' => 'bol', 'BolC2t07346H' => 'bol', 'BolC3t13817H' => 'bol', 'BolC4t22625H' => 'bol', 'BolC4t23297H' => 'bol', 'BolC8t51278H' => 'bol', 'BolC9t58050H' => 'bol', 'BolC9t58051H' => 'bol', 'BolC9t60163H' => 'bol', 'BraA02t04712Z' => 'bra', 'BraA02t05791Z' => 'bra', 'BraA03t10483Z' => 'bra', 'BraA05t19795Z' => 'bra', 'BraA05t20276Z' => 'bra', 'BraA09t40827Z' => 'bra', 'BraA10t43750Z' => 'bra', 'BraA10t43751Z' => 'bra', 'BraA10t45370Z' => 'bra', 'C02p00400' => 'bna', 'C02p12460' => 'bna', 'C03p13680' => 'bna', 'C04p10270' => 'bna', 'C04p17500' => 'bna', 'C08p37010' => 'bna', 'C09p51880' => 'bna', 'C09p51890' => 'bna', 'C09p74300' => 'bna', 'CAN.G179.26' => 'can', 'CAN.G3384.1' => 'can', 'CAN.G394.68' => 'can', 'CAN.G907.13' => 'can', 'CANSAT11G0012' => 'cansat', 'CANSAT25G1586' => 'cansat', 'CANSAT35G0735' => 'cansat', 'CANSAT54G0556' => 'cansat', 'CANSAT64G0356' => 'cansat', 'CANSAT78G2042' => 'cansat', 'CARHR125920' => 'chi', 'CARHR131910' => 'chi', 'CARHR172390' => 'chi', 'CARHR211140' => 'chi', 'CARHR285850' => 'chi', 'CARHR285860' => 'chi', 'Carub.0004s1347' => 'cru', 'Carub.0004s1960' => 'cru', 'Carub.0005s2880' => 'cru', 'Carub.0006s0107' => 'cru', 'Carub.0008s2015' => 'cru', 'Carub.0008s2016' => 'cru', 'Carub.0008s2017' => 'cru', 'Ca_01315_v3' => 'car', 'Ca_05063_v3' => 'car', 'Ca_10231_v3' => 'car', 'Ca_10913_v3' => 'car', 'Ca_19156_v3' => 'car', 'Ca_23644_v3' => 'car', 'Ca_26735_v3' => 'car', 'Cc01_g13130' => 'ccan', 'Cc02_g21690' => 'ccan', 'Cc03_g03600' => 'ccan', 'Cc06_g02510' => 'ccan', 'CDE02G1265' => 'cde', 'CDE05G0415' => 'cde', 'CDE08G1082' => 'cde', 'Cfa005780' => 'cfa', 'Cfa011522' => 'cfa', 'Cfa011523' => 'cfa', 'Cfa015627' => 'cfa', 'Cfa017359' => 'cfa', 'Ciclev10005687m.g' => 'ccl', 'Ciclev10012173m.g' => 'ccl', 'Ciclev10021621m.g' => 'ccl', 'Ciclev10028968m.g' => 'ccl', 'Ciclev10029907m.g' => 'ccl', 'CiPaw.01G164800' => 'cil', 'CiPaw.07G083700' => 'cil', 'CiPaw.07G127000' => 'cil', 'CiPaw.07G136900' => 'cil', 'CiPaw.08G081700' => 'cil', 'CiPaw.09G194600' => 'cil', 'CiPaw.10G146500' => 'cil', 'CiPaw.13G091500' => 'cil', 'CiPaw.13G091600' => 'cil', 'ClCG00G003390' => 'cla', 'ClCG01G007220' => 'cla', 'ClCG03G001370' => 'cla', 'ClCG04G008100' => 'cla', 'ClCG06G006110' => 'cla', 'ClCG06G006130' => 'cla', 'ClCG10G021210' => 'cla', 'COL.COLO4_07648' => 'col', 'COL.COLO4_07650' => 'col', 'COL.COLO4_07651' => 'col', 'COL.COLO4_14780' => 'col', 'COL.COLO4_18546' => 'col', 'COL.COLO4_18547' => 'col', 'COL.COLO4_23103' => 'col', 'COL.COLO4_30419' => 'col', 'COL.COLO4_34232' => 'col', 'Cpa.g.sc169.20' => 'cpa', 'Cpa.g.sc57.45' => 'cpa', 'Cpa.g.sc58.124' => 'cpa', 'Cpa.g.sc58.125' => 'cpa', 'Cpa.g.sc81.118' => 'cpa', 'Cpa.g.sc81.119' => 'cpa', 'Cre12.g524700' => 'cre', 'CsaV3_1G034430' => 'csa', 'CsaV3_1G034440' => 'csa', 'CsaV3_1G034450' => 'csa', 'CsaV3_3G034830' => 'csa', 'CsaV3_4G025090' => 'csa', 'CsaV3_5G018660' => 'csa', 'CsaV3_6G038160' => 'csa', 'CSS0003447' => 'camsi', 'CSS0017840' => 'camsi', 'CSS0019260' => 'camsi', 'CSS0040375' => 'camsi', 'CSS0042533' => 'camsi', 'DCAR_005960' => 'dca', 'DCAR_012104' => 'dca', 'DCAR_012105' => 'dca', 'DCAR_012293' => 'dca', 'DCAR_015632' => 'dca', 'DCAR_024602' => 'dca', 'DCAR_028752' => 'dca', 'Dinv06261' => 'din', 'Dinv13982' => 'din', 'Dinv17029' => 'din', 'Dinv18463' => 'din', 'Dinv33181' => 'din', 'Dinv35585' => 'din', 'Dinv37161' => 'din', 'Dinv42977' => 'din', 'Dinv43122' => 'din', 'Dinv44517' => 'din', 'Duzib093G0256' => 'dzi', 'Duzib106G1254' => 'dzi', 'Duzib128G1789' => 'dzi', 'Duzib133G0633' => 'dzi', 'Duzib138G0510' => 'dzi', 'Duzib150G1084' => 'dzi', 'Duzib168G0488' => 'dzi', 'Duzib168G1523' => 'dzi', 'Duzib170G0133' => 'dzi', 'ECA234G1433' => 'eca', 'ECA236G1432' => 'eca', 'ECA236G2256' => 'eca', 'ECA236G2365' => 'eca', 'ECA236G4830' => 'eca', 'ECA248G1505' => 'eca', 'EL10Ac3g06431' => 'bvu', 'EL10Ac5g12577' => 'bvu', 'EL10Ac6g13533' => 'bvu', 'EL10Ac7g16045' => 'bvu', 'Eucgr.A01281' => 'egr', 'Eucgr.B02326' => 'egr', 'Eucgr.H03532' => 'egr', 'Eucgr.K00553' => 'egr', 'Eucgr.K03116' => 'egr', 'FAN02G3963' => 'fan', 'FAN05G0438' => 'fan', 'FAN09G2434' => 'fan', 'FAN12G3984' => 'fan', 'FAN14G0798' => 'fan', 'FAN17G0652' => 'fan', 'FAN19G1988' => 'fan', 'FAN22G0632' => 'fan', 'FAN23G0387' => 'fan', 'FAN26G1323' => 'fan', 'FAN28G0666' => 'fan', 'FvH4_1g26080' => 'fve', 'FvH4_3g36780' => 'fve', 'FvH4_4g15270' => 'fve', 'FvH4_6g13490' => 'fve', 'Glyma.01G098700' => 'gma', 'Glyma.03G065900' => 'gma', 'Glyma.03G073754' => 'gma', 'Glyma.03G073758' => 'gma', 'Glyma.03G083200' => 'gma', 'Glyma.03G225500' => 'gma', 'Glyma.05G037766' => 'gma', 'Glyma.07G133500' => 'gma', 'Glyma.10G139400' => 'gma', 'Glyma.10G248900' => 'gma', 'Glyma.11G137800' => 'gma', 'Glyma.12G061300' => 'gma', 'Glyma.13G337900' => 'gma', 'Glyma.15G036600' => 'gma', 'Glyma.18G182800' => 'gma', 'Glyma.19G222500' => 'gma', 'Glyma.20G144800' => 'gma', 'Gohir.A01G222000' => 'ghi', 'Gohir.A03G044000' => 'ghi', 'Gohir.A03G044100' => 'ghi', 'Gohir.A04G083100' => 'ghi', 'Gohir.A07G127200' => 'ghi', 'Gohir.A07G132400' => 'ghi', 'Gohir.A08G000700' => 'ghi', 'Gohir.A11G327300' => 'ghi', 'Gohir.D01G211500' => 'ghi', 'Gohir.D03G123400' => 'ghi', 'Gohir.D03G123500' => 'ghi', 'Gohir.D04G121800' => 'ghi', 'Gohir.D07G131500' => 'ghi', 'Gohir.D07G136600' => 'ghi', 'Gohir.D08G011600' => 'ghi', 'Gohir.D11G346200' => 'ghi', 'Gorai.001G142800' => 'gra', 'Gorai.001G148700' => 'gra', 'Gorai.002G257300' => 'gra', 'Gorai.003G130000' => 'gra', 'Gorai.003G130100' => 'gra', 'Gorai.004G005300' => 'gra', 'Gorai.007G376500' => 'gra', 'Gorai.012G104700' => 'gra', 'GSVIVG01017946001' => 'vvi', 'GSVIVG01024928001' => 'vvi', 'GSVIVG01028227001' => 'vvi', 'GSVIVG01034151001' => 'vvi', 'HanXRQChr05g0135031' => 'han', 'HanXRQChr05g0135041' => 'han', 'HanXRQChr05g0140021' => 'han', 'HanXRQChr06g0178981' => 'han', 'HanXRQChr07g0188251' => 'han', 'HanXRQChr08g0235311' => 'han', 'HanXRQChr09g0271011' => 'han', 'HanXRQChr10g0293321' => 'han', 'HanXRQChr13g0388171' => 'han', 'Haze_00916' => 'cav', 'Haze_05063' => 'cav', 'Haze_20814' => 'cav', 'Haze_24128' => 'cav', 'Hma1.2p1_0745F.1_g212010' => 'hma', 'Hma1.2p1_0757F.1_g213260' => 'hma', 'Hma1.2p1_0936F.1_g238840' => 'hma', 'Hma1.2p1_1735F.1_g299890' => 'hma', 'Hma1.2p1_1861F.1_g305685' => 'hma', 'HPP92_003397' => 'vpl', 'HPP92_012597' => 'vpl', 'HPP92_015520' => 'vpl', 'HPP92_015539' => 'vpl', 'HPP92_020373' => 'vpl', 'Hund04938' => 'sun', 'Hund10677' => 'sun', 'Hund11033' => 'sun', 'Hund12155' => 'sun', 'Lalb_Chr01g0022551' => 'lal', 'Lalb_Chr03g0042341' => 'lal', 'Lalb_Chr07g0192931' => 'lal', 'Lalb_Chr12g0209551' => 'lal', 'Lalb_Chr19g0125251' => 'lal', 'Lalb_Chr19g0137891' => 'lal', 'Lalb_Chr21g0304641' => 'lal', 'Lalb_Chr21g0309881' => 'lal', 'Lj1A5T12' => 'lonja', 'Lj1C148G10' => 'lonja', 'Lj2A93T83' => 'lonja', 'Lj3A738G68' => 'lonja', 'Lj3C966T1' => 'lonja', 'Lj3g0018958' => 'lja', 'Lj3g0021831' => 'lja', 'Lj3g0025443' => 'lja', 'Lj4g0026809' => 'lja', 'Lj5g0012558' => 'lja', 'Lj5g0021586' => 'lja', 'Lsat_1_v5_gn_5_156840' => 'lsa', 'Lsat_1_v5_gn_8_73460' => 'lsa', 'Lsat_1_v5_gn_8_73481' => 'lsa', 'Lsat_1_v5_gn_9_31601' => 'lsa', 'Lsat_1_v5_gn_9_77320' => 'lsa', 'Manes.01G171300' => 'mes', 'Manes.01G171400' => 'mes', 'Manes.01G236100' => 'mes', 'Manes.02G130500' => 'mes', 'Manes.02G130600' => 'mes', 'Manes.03G180200' => 'mes', 'Manes.05G007000' => 'mes', 'Manes.08G084400' => 'mes', 'Manes.09G092600' => 'mes', 'Manes.15G027900' => 'mes', 'MBI04_g40948_MAGBIO' => 'mbi', 'MBI14_g12123_MAGBIO' => 'mbi', 'MBI18_g28915_MAGBIO' => 'mbi', 'MCO09G053' => 'mco', 'MCO11G782' => 'mco', 'MCO15G215' => 'mco', 'MD03G1088500' => 'mdo', 'MD03G1088600' => 'mdo', 'MD04G1130800' => 'mdo', 'MD09G1291700' => 'mdo', 'MD11G1097500' => 'mdo', 'MD11G1097600' => 'mdo', 'MD12G1143900' => 'mdo', 'MD13G1191400' => 'mdo', 'MD16G1191500' => 'mdo', 'Medtr1g085570' => 'mtr', 'Medtr1g104610' => 'mtr', 'Medtr2g097520' => 'mtr', 'Medtr4g021800' => 'mtr', 'Medtr4g021825' => 'mtr', 'Medtr4g064270' => 'mtr', 'Medtr4g064380' => 'mtr', 'Medtr7g062150' => 'mtr', 'MELO3C003138.2' => 'cme', 'MELO3C005187.2' => 'cme', 'MELO3C009252.2' => 'cme', 'MELO3C014481.2' => 'cme', 'MELO3C020616.2' => 'cme', 'MELO3C020617.2' => 'cme', 'MELO3C020618.2' => 'cme', 'Migut.G00328' => 'egut', 'Migut.J00320' => 'egut', 'Migut.L01000' => 'egut', 'Migut.L01953' => 'egut', 'MSTRG.10253' => 'ama', 'MSTRG.19077' => 'ama', 'MSTRG.26780' => 'ama', 'MSTRG.4023' => 'ama', 'MSTRG.5655' => 'ama', 'MSTRG.9992' => 'ama', 'Nitab4.5_0000043g0310' => 'nta', 'Nitab4.5_0000463g0080' => 'nta', 'Nitab4.5_0000705g0170' => 'nta', 'Nitab4.5_0001326g0060' => 'nta', 'Nitab4.5_0001628g0030' => 'nta', 'Nitab4.5_0002103g0110' => 'nta', 'Nitab4.5_0002946g0030' => 'nta', 'Nitab4.5_0004639g0030' => 'nta', 'Nn2g11149' => 'nnu', 'Nn2g13389' => 'nnu', 'Nn4g25326' => 'nnu', 'Nn4g26290' => 'nnu', 'Nn5g29865' => 'nnu', 'Oeu004163.1' => 'oeu', 'Oeu006901.1' => 'oeu', 'Oeu010096.1' => 'oeu', 'Oeu024340.1' => 'oeu', 'Oeu048369.1' => 'oeu', 'Os01g0973000' => 'osa', 'Os03g0273800' => 'osa', 'Os03g0701200' => 'osa', 'Os03g0834050' => 'osa', 'Os07g0634400' => 'osa', 'Peaxi162Scf00092g01414' => 'pax', 'Peaxi162Scf00165g00818' => 'pax', 'Peaxi162Scf00309g00516' => 'pax', 'Peaxi162Scf00774g00218' => 'pax', 'PGR004G1824' => 'pgr', 'PGR004G2606' => 'pgr', 'PGR031G2716' => 'pgr', 'PGR102G2460' => 'pgr', 'PGR142G2599' => 'pgr', 'PGSC0003DMG400000843' => 'stu', 'PGSC0003DMG400008829' => 'stu', 'PGSC0003DMG400030418' => 'stu', 'PGSC0003DMG400031834' => 'stu', 'PGSC0003DMG401028300' => 'stu', 'PGSC0003DMG402028300' => 'stu', 'Phvul.001G219300' => 'pvu', 'Phvul.007G056000' => 'pvu', 'Phvul.007G208000' => 'pvu', 'Phvul.008G119500' => 'pvu', 'Phvul.010G011200' => 'pvu', 'Phvul.010G014800' => 'pvu', 'Phvul.011G062900' => 'pvu', 'Phvul.L007043' => 'pvu', 'Potri.001G242300' => 'ptr', 'Potri.002G185300' => 'ptr', 'Potri.006G086900' => 'ptr', 'Potri.008G151700' => 'ptr', 'Potri.009G033500' => 'ptr', 'Potri.010G089300' => 'ptr', 'Potri.014G110800' => 'ptr', 'Pp3c27_8130' => 'ppa', 'Pp3c6_27410' => 'ppa', 'PRCOL_00001659' => 'pco', 'PRCOL_00001927' => 'pco', 'PRCOL_00003649' => 'pco', 'Prupe.1G011600' => 'ppe', 'Prupe.3G000800' => 'ppe', 'Prupe.3G001100' => 'ppe', 'Prupe.6G072700' => 'ppe', 'Prupe.6G072800' => 'ppe', 'Prupe.6G257300' => 'ppe', 'Prupe.8G033000' => 'ppe', 'Psat0s2633g0080' => 'psa', 'Psat0s3396g0080' => 'psa', 'Psat0s3396g0200' => 'psa', 'Psat3g139080' => 'psa', 'Psat5g285080' => 'psa', 'Psat6g157760' => 'psa', 'Psat6g208440' => 'psa', 'Psat7g215320' => 'psa', 'Psat7g215400' => 'psa', 'Psat7g235600' => 'psa', 'Psat7g235760' => 'psa', 'PSO063G4603' => 'pso', 'PSO210G0182' => 'pso', 'PSO210G0196' => 'pso', 'PSO339G0394' => 'pso', 'PSO339G4127' => 'pso', 'PSO513G0064' => 'pso', 'PSO761G0079' => 'pso', 'QL01p031003' => 'qlo', 'QL01p031078' => 'qlo', 'QL06p003004' => 'qlo', 'QL07p048731' => 'qlo', 'QL09p037427' => 'qlo', 'RcHm_v2.0_Chr3g0466361' => 'rch', 'RcHm_v2.0_Chr3g0485571' => 'rch', 'RcHm_v2.0_Chr4g0416551' => 'rch', 'RcHm_v2.0_Chr5g0065831' => 'rch', 'Rhsim01G0230500' => 'rsi', 'Rhsim05G0194000' => 'rsi', 'Rhsim08G0250400' => 'rsi', 'Sabra02G0131000' => 'sbr', 'Sabra06G0066300' => 'sbr', 'Sabra08G0115500' => 'sbr', 'Sabra09G0023900' => 'sbr', 'Sabra10G0054000' => 'sbr', 'Sabra14G0081500' => 'sbr', 'Sabra16G0147100' => 'sbr', 'SalBow2G2957' => 'sbo', 'SalBow4G3320' => 'sbo', 'SalBow8G1894' => 'sbo', 'Sc07g0007950' => 'sci', 'Sc12g0001360' => 'sci', 'Sc13g0004330' => 'sci', 'Sc20g0005010' => 'sci', 'Sed0000361' => 'sed', 'Sed0001706' => 'sed', 'Sed0002422' => 'sed', 'Sed0004029' => 'sed', 'Sed0004602' => 'sed', 'Sed0004943' => 'sed', 'Sed0008646' => 'sed', 'Sed0023313' => 'sed', 'Sed0024843' => 'sed', 'SEGI_00081' => 'sgi', 'SEGI_00947' => 'sgi', 'SEGI_04046' => 'sgi', 'SEGI_06880' => 'sgi', 'SEGI_09736' => 'sgi', 'SEGI_12741' => 'sgi', 'SEGI_14530' => 'sgi', 'SEGI_20705' => 'sgi', 'SEGI_26088' => 'sgi', 'SEGI_28323' => 'sgi', 'SEGI_33343' => 'sgi', 'SGA_v2.0_scaffold126G33775' => 'sas', 'SGA_v2.0_scaffold2G01337' => 'sas', 'SGA_v2.0_scaffold38G15006' => 'sas', 'SGA_v2.0_scaffold39G15264' => 'sas', 'SGA_v2.0_scaffold453G51880' => 'sas', 'SHI12696' => 'shi', 'SMO367G1096' => 'smo', 'Solyc01g068630.3' => 'sly', 'Solyc05g011880.3' => 'sly', 'Solyc06g076300.3' => 'sly', 'Solyc09g010940.4' => 'sly', 'Solyc09g075890.3' => 'sly', 'Sopen01g030560' => 'spe', 'Sopen05g006630' => 'spe', 'Sopen06g032720' => 'spe', 'Sopen09g005660' => 'spe', 'Sopen09g030690' => 'spe', 'Sp4g14540' => 'spa', 'Sp4g20030' => 'spa', 'Sp5g01320' => 'spa', 'Sp6g21170' => 'spa', 'Sp6g21180' => 'spa', 'Sp6g21190' => 'spa', 'Sp6g40220' => 'spa', 'TAR362G0122' => 'tar', 'TAR362G1338' => 'tar', 'TAR369G0590' => 'tar', 'TAR371G0824' => 'tar', 'TAR622G1429' => 'tar', 'TAR623G0734' => 'tar', 'TAR625G0441' => 'tar', 'TAR629G0976' => 'tar', 'TAR633G1195' => 'tar', 'TAR636G2660' => 'tar', 'THA.LOC104799440' => 'tha', 'THA.LOC104800966' => 'tha', 'THA.LOC104806559' => 'tha', 'THA.LOC104810765' => 'tha', 'THA.LOC104816266' => 'tha', 'THA.LOC104817419' => 'tha', 'THA.LOC104827021' => 'tha', 'Thecc.01G327400' => 'tca', 'Thecc.04G229200' => 'tca', 'Thecc.05G037400' => 'tca', 'Thecc.09G318600' => 'tca', 'Thecc.09G318700' => 'tca', 'Thhalv10006238m.g' => 'esa', 'Thhalv10014321m.g' => 'esa', 'Thhalv10014335m.g' => 'esa', 'Thhalv10015826m.g' => 'esa', 'Thhalv10017107m.g' => 'esa', 'Thhalv10017180m.g' => 'esa', 'Thhalv10029339m.g' => 'esa', 'TPR.G1699' => 'tpr', 'TPR.G23609' => 'tpr', 'TPR.G3081' => 'tpr', 'TPR.G40397' => 'tpr', 'TPR.G5522' => 'tpr', 'TPR.G5618' => 'tpr', 'TPR.G5626' => 'tpr', 'TWI09G1632' => 'twi', 'TWI23G1230' => 'twi', 'TWI53G1064' => 'twi', 'TWI59G0751' => 'twi', 'TWI74G0947' => 'twi', 'TWI77G0337' => 'twi', 'TWI79G1254' => 'twi', 'unitig_0.g2341' => 'ugi', 'unitig_26.g10006' => 'ugi', 'unitig_26.g10008' => 'ugi', 'unitig_26.g9192' => 'ugi', 'vmacro14547' => 'vma', 'vmacro15333' => 'vma', 'vmacro18743' => 'vma', 'vmacro20166' => 'vma', 'VMungo0331G0523' => 'vmu', 'VMungo0331G1202' => 'vmu', 'VMungo0720G1228' => 'vmu', 'VMungo0720G1514' => 'vmu', 'VMungo1080G0169' => 'vmu', 'VMungo1127G1475' => 'vmu', 'VMungo1383G1208' => 'vmu', 'VMungo1383G1698' => 'vmu', 'Zm00001eb012270' => 'zma', 'Zm00001eb054100' => 'zma', 'Zm00001eb063350' => 'zma', 'Zm00001eb328560' => 'zma', 'Zm00001eb342820' => 'zma', 'Zm00001eb362210' => 'zma', 'Zm00001eb397730' => 'zma', 'Zm00001eb399750' => 'zma' ) $gf_id = 'HOM05D000959' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000959' ) $data_identifier = 'HOM05D000959' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 5, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 5, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 10, 'mbi' => (int) 3, 'mco' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 2, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 3, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 11, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399750' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000959', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '622', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p07100' => 'bna', 'A03p11720' => 'bna', 'A05p08300' => 'bna', 'A05p13380' => 'bna', 'A09p54130' => 'bna', 'A10p16690' => 'bna', 'A10p16700' => 'bna', 'A10p33390' => 'bna', 'Aa31LG10G16020' => 'aar', 'Aa31LG1G11810' => 'aar', 'Aa31LG1G11830' => 'aar', 'Aa31LG1G22510' => 'aar', 'Aa31LG5G4890' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5793' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2310' => 'aag', 'Actinidia08499' => 'ach', 'Actinidia11262' => 'ach', 'Actinidia23926' => 'ach', 'Actinidia34420' => 'ach', 'Actinidia36970' => 'ach', 'Ah.02g111220' => 'amhyb', 'Ah.15g097750' => 'amhyb', 'AL4G27500' => 'aly', 'AL6G11470' => 'aly', 'AL8G35950' => 'aly', 'AL8G35960' => 'aly', 'AL8G35970' => 'aly', 'Aqoxy1G00912' => 'aox', 'Aqoxy2G02253' => 'aox', 'Aqoxy2G02411' => 'aox', 'Aqoxy5G00485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BZ66YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K8ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM4FUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6BF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HFV7XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25JBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0YNNV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MAKK6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P70IT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP2Z6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V61LZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YWP64R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3S9AI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7PGHH' => 'arhy', 'AT2G32150' => 'ath', 'AT3G62040' => 'ath', 'AT5G02230' => 'ath', 'AT5G59480' => 'ath', 'AT5G59490' => 'ath', 'ATR0332G060' => 'atr', 'ATR0559G190' => 'atr', 'ATR0693G294' => 'atr', 'Atru.chr3.3975' => 'acertr', 'Atru.chr3.3976' => 'acertr', 'Atru.chr3.3977' => 'acertr', 'Atru.chr4.2498' => 'acertr', 'Atru.chr5.838' => 'acertr', 'Atru.chr8.1990' => 'acertr', 'Atru.chr8.1991' => 'acertr', 'Atru.chr8.1992' => 'acertr', 'AUR62001759' => 'cqu', 'AUR62009545' => 'cqu', 'AUR62010474' => 'cqu', 'AUR62025820' => 'cqu', 'AUR62030422' => 'cqu', 'AUR62033605' => 'cqu', 'AUR62038615' => 'cqu', 'AUR62041347' => 'cqu', 'BcaB01g04574' => 'bca', 'BcaB02g09263' => 'bca', 'BcaB02g10453' => 'bca', 'BcaB05g22513' => 'bca', 'BcaB08g36253' => 'bca', 'BcaB08g36254' => 'bca', 'BcaC01g06519' => 'bca', 'BcaC02g11889' => 'bca', 'BcaC03g14010' => 'bca', 'BcaC03g18439' => 'bca', 'BcaC04g19765' => 'bca', 'BcaC09g48432' => 'bca', 'BcaNung07302' => 'bca', 'BolC2t06040H' => 'bol', 'BolC2t07346H' => 'bol', 'BolC3t13817H' => 'bol', 'BolC4t22625H' => 'bol', 'BolC4t23297H' => 'bol', 'BolC8t51278H' => 'bol', 'BolC9t58050H' => 'bol', 'BolC9t58051H' => 'bol', 'BolC9t60163H' => 'bol', 'BraA02t04712Z' => 'bra', 'BraA02t05791Z' => 'bra', 'BraA03t10483Z' => 'bra', 'BraA05t19795Z' => 'bra', 'BraA05t20276Z' => 'bra', 'BraA09t40827Z' => 'bra', 'BraA10t43750Z' => 'bra', 'BraA10t43751Z' => 'bra', 'BraA10t45370Z' => 'bra', 'C02p00400' => 'bna', 'C02p12460' => 'bna', 'C03p13680' => 'bna', 'C04p10270' => 'bna', 'C04p17500' => 'bna', 'C08p37010' => 'bna', 'C09p51880' => 'bna', 'C09p51890' => 'bna', 'C09p74300' => 'bna', 'CAN.G179.26' => 'can', 'CAN.G3384.1' => 'can', 'CAN.G394.68' => 'can', 'CAN.G907.13' => 'can', 'CANSAT11G0012' => 'cansat', 'CANSAT25G1586' => 'cansat', 'CANSAT35G0735' => 'cansat', 'CANSAT54G0556' => 'cansat', 'CANSAT64G0356' => 'cansat', 'CANSAT78G2042' => 'cansat', 'CARHR125920' => 'chi', 'CARHR131910' => 'chi', 'CARHR172390' => 'chi', 'CARHR211140' => 'chi', 'CARHR285850' => 'chi', 'CARHR285860' => 'chi', 'Carub.0004s1347' => 'cru', 'Carub.0004s1960' => 'cru', 'Carub.0005s2880' => 'cru', 'Carub.0006s0107' => 'cru', 'Carub.0008s2015' => 'cru', 'Carub.0008s2016' => 'cru', 'Carub.0008s2017' => 'cru', 'Ca_01315_v3' => 'car', 'Ca_05063_v3' => 'car', 'Ca_10231_v3' => 'car', 'Ca_10913_v3' => 'car', 'Ca_19156_v3' => 'car', 'Ca_23644_v3' => 'car', 'Ca_26735_v3' => 'car', 'Cc01_g13130' => 'ccan', 'Cc02_g21690' => 'ccan', 'Cc03_g03600' => 'ccan', 'Cc06_g02510' => 'ccan', 'CDE02G1265' => 'cde', 'CDE05G0415' => 'cde', 'CDE08G1082' => 'cde', 'Cfa005780' => 'cfa', 'Cfa011522' => 'cfa', 'Cfa011523' => 'cfa', 'Cfa015627' => 'cfa', 'Cfa017359' => 'cfa', 'Ciclev10005687m.g' => 'ccl', 'Ciclev10012173m.g' => 'ccl', 'Ciclev10021621m.g' => 'ccl', 'Ciclev10028968m.g' => 'ccl', 'Ciclev10029907m.g' => 'ccl', 'CiPaw.01G164800' => 'cil', 'CiPaw.07G083700' => 'cil', 'CiPaw.07G127000' => 'cil', 'CiPaw.07G136900' => 'cil', 'CiPaw.08G081700' => 'cil', 'CiPaw.09G194600' => 'cil', 'CiPaw.10G146500' => 'cil', 'CiPaw.13G091500' => 'cil', 'CiPaw.13G091600' => 'cil', 'ClCG00G003390' => 'cla', 'ClCG01G007220' => 'cla', 'ClCG03G001370' => 'cla', 'ClCG04G008100' => 'cla', 'ClCG06G006110' => 'cla', 'ClCG06G006130' => 'cla', 'ClCG10G021210' => 'cla', 'COL.COLO4_07648' => 'col', 'COL.COLO4_07650' => 'col', 'COL.COLO4_07651' => 'col', 'COL.COLO4_14780' => 'col', 'COL.COLO4_18546' => 'col', 'COL.COLO4_18547' => 'col', 'COL.COLO4_23103' => 'col', 'COL.COLO4_30419' => 'col', 'COL.COLO4_34232' => 'col', 'Cpa.g.sc169.20' => 'cpa', 'Cpa.g.sc57.45' => 'cpa', 'Cpa.g.sc58.124' => 'cpa', 'Cpa.g.sc58.125' => 'cpa', 'Cpa.g.sc81.118' => 'cpa', 'Cpa.g.sc81.119' => 'cpa', 'Cre12.g524700' => 'cre', 'CsaV3_1G034430' => 'csa', 'CsaV3_1G034440' => 'csa', 'CsaV3_1G034450' => 'csa', 'CsaV3_3G034830' => 'csa', 'CsaV3_4G025090' => 'csa', 'CsaV3_5G018660' => 'csa', 'CsaV3_6G038160' => 'csa', 'CSS0003447' => 'camsi', 'CSS0017840' => 'camsi', 'CSS0019260' => 'camsi', 'CSS0040375' => 'camsi', 'CSS0042533' => 'camsi', 'DCAR_005960' => 'dca', 'DCAR_012104' => 'dca', 'DCAR_012105' => 'dca', 'DCAR_012293' => 'dca', 'DCAR_015632' => 'dca', 'DCAR_024602' => 'dca', 'DCAR_028752' => 'dca', 'Dinv06261' => 'din', 'Dinv13982' => 'din', 'Dinv17029' => 'din', 'Dinv18463' => 'din', 'Dinv33181' => 'din', 'Dinv35585' => 'din', 'Dinv37161' => 'din', 'Dinv42977' => 'din', 'Dinv43122' => 'din', 'Dinv44517' => 'din', 'Duzib093G0256' => 'dzi', 'Duzib106G1254' => 'dzi', 'Duzib128G1789' => 'dzi', 'Duzib133G0633' => 'dzi', 'Duzib138G0510' => 'dzi', 'Duzib150G1084' => 'dzi', 'Duzib168G0488' => 'dzi', 'Duzib168G1523' => 'dzi', 'Duzib170G0133' => 'dzi', 'ECA234G1433' => 'eca', 'ECA236G1432' => 'eca', 'ECA236G2256' => 'eca', 'ECA236G2365' => 'eca', 'ECA236G4830' => 'eca', 'ECA248G1505' => 'eca', 'EL10Ac3g06431' => 'bvu', 'EL10Ac5g12577' => 'bvu', 'EL10Ac6g13533' => 'bvu', 'EL10Ac7g16045' => 'bvu', 'Eucgr.A01281' => 'egr', 'Eucgr.B02326' => 'egr', 'Eucgr.H03532' => 'egr', 'Eucgr.K00553' => 'egr', 'Eucgr.K03116' => 'egr', 'FAN02G3963' => 'fan', 'FAN05G0438' => 'fan', 'FAN09G2434' => 'fan', 'FAN12G3984' => 'fan', 'FAN14G0798' => 'fan', 'FAN17G0652' => 'fan', 'FAN19G1988' => 'fan', 'FAN22G0632' => 'fan', 'FAN23G0387' => 'fan', 'FAN26G1323' => 'fan', 'FAN28G0666' => 'fan', 'FvH4_1g26080' => 'fve', 'FvH4_3g36780' => 'fve', 'FvH4_4g15270' => 'fve', 'FvH4_6g13490' => 'fve', 'Glyma.01G098700' => 'gma', 'Glyma.03G065900' => 'gma', 'Glyma.03G073754' => 'gma', 'Glyma.03G073758' => 'gma', 'Glyma.03G083200' => 'gma', 'Glyma.03G225500' => 'gma', 'Glyma.05G037766' => 'gma', 'Glyma.07G133500' => 'gma', 'Glyma.10G139400' => 'gma', 'Glyma.10G248900' => 'gma', 'Glyma.11G137800' => 'gma', 'Glyma.12G061300' => 'gma', 'Glyma.13G337900' => 'gma', 'Glyma.15G036600' => 'gma', 'Glyma.18G182800' => 'gma', 'Glyma.19G222500' => 'gma', 'Glyma.20G144800' => 'gma', 'Gohir.A01G222000' => 'ghi', 'Gohir.A03G044000' => 'ghi', 'Gohir.A03G044100' => 'ghi', 'Gohir.A04G083100' => 'ghi', 'Gohir.A07G127200' => 'ghi', 'Gohir.A07G132400' => 'ghi', 'Gohir.A08G000700' => 'ghi', 'Gohir.A11G327300' => 'ghi', 'Gohir.D01G211500' => 'ghi', 'Gohir.D03G123400' => 'ghi', 'Gohir.D03G123500' => 'ghi', 'Gohir.D04G121800' => 'ghi', 'Gohir.D07G131500' => 'ghi', 'Gohir.D07G136600' => 'ghi', 'Gohir.D08G011600' => 'ghi', 'Gohir.D11G346200' => 'ghi', 'Gorai.001G142800' => 'gra', 'Gorai.001G148700' => 'gra', 'Gorai.002G257300' => 'gra', 'Gorai.003G130000' => 'gra', 'Gorai.003G130100' => 'gra', 'Gorai.004G005300' => 'gra', 'Gorai.007G376500' => 'gra', 'Gorai.012G104700' => 'gra', 'GSVIVG01017946001' => 'vvi', 'GSVIVG01024928001' => 'vvi', 'GSVIVG01028227001' => 'vvi', 'GSVIVG01034151001' => 'vvi', 'HanXRQChr05g0135031' => 'han', 'HanXRQChr05g0135041' => 'han', 'HanXRQChr05g0140021' => 'han', 'HanXRQChr06g0178981' => 'han', 'HanXRQChr07g0188251' => 'han', 'HanXRQChr08g0235311' => 'han', 'HanXRQChr09g0271011' => 'han', 'HanXRQChr10g0293321' => 'han', 'HanXRQChr13g0388171' => 'han', 'Haze_00916' => 'cav', 'Haze_05063' => 'cav', 'Haze_20814' => 'cav', 'Haze_24128' => 'cav', 'Hma1.2p1_0745F.1_g212010' => 'hma', 'Hma1.2p1_0757F.1_g213260' => 'hma', 'Hma1.2p1_0936F.1_g238840' => 'hma', 'Hma1.2p1_1735F.1_g299890' => 'hma', 'Hma1.2p1_1861F.1_g305685' => 'hma', 'HPP92_003397' => 'vpl', 'HPP92_012597' => 'vpl', 'HPP92_015520' => 'vpl', 'HPP92_015539' => 'vpl', 'HPP92_020373' => 'vpl', 'Hund04938' => 'sun', 'Hund10677' => 'sun', 'Hund11033' => 'sun', 'Hund12155' => 'sun', 'Lalb_Chr01g0022551' => 'lal', 'Lalb_Chr03g0042341' => 'lal', 'Lalb_Chr07g0192931' => 'lal', 'Lalb_Chr12g0209551' => 'lal', 'Lalb_Chr19g0125251' => 'lal', 'Lalb_Chr19g0137891' => 'lal', 'Lalb_Chr21g0304641' => 'lal', 'Lalb_Chr21g0309881' => 'lal', 'Lj1A5T12' => 'lonja', 'Lj1C148G10' => 'lonja', 'Lj2A93T83' => 'lonja', 'Lj3A738G68' => 'lonja', 'Lj3C966T1' => 'lonja', 'Lj3g0018958' => 'lja', 'Lj3g0021831' => 'lja', 'Lj3g0025443' => 'lja', 'Lj4g0026809' => 'lja', 'Lj5g0012558' => 'lja', 'Lj5g0021586' => 'lja', 'Lsat_1_v5_gn_5_156840' => 'lsa', 'Lsat_1_v5_gn_8_73460' => 'lsa', 'Lsat_1_v5_gn_8_73481' => 'lsa', 'Lsat_1_v5_gn_9_31601' => 'lsa', 'Lsat_1_v5_gn_9_77320' => 'lsa', 'Manes.01G171300' => 'mes', 'Manes.01G171400' => 'mes', 'Manes.01G236100' => 'mes', 'Manes.02G130500' => 'mes', 'Manes.02G130600' => 'mes', 'Manes.03G180200' => 'mes', 'Manes.05G007000' => 'mes', 'Manes.08G084400' => 'mes', 'Manes.09G092600' => 'mes', 'Manes.15G027900' => 'mes', 'MBI04_g40948_MAGBIO' => 'mbi', 'MBI14_g12123_MAGBIO' => 'mbi', 'MBI18_g28915_MAGBIO' => 'mbi', 'MCO09G053' => 'mco', 'MCO11G782' => 'mco', 'MCO15G215' => 'mco', 'MD03G1088500' => 'mdo', 'MD03G1088600' => 'mdo', 'MD04G1130800' => 'mdo', 'MD09G1291700' => 'mdo', 'MD11G1097500' => 'mdo', 'MD11G1097600' => 'mdo', 'MD12G1143900' => 'mdo', 'MD13G1191400' => 'mdo', 'MD16G1191500' => 'mdo', 'Medtr1g085570' => 'mtr', 'Medtr1g104610' => 'mtr', 'Medtr2g097520' => 'mtr', 'Medtr4g021800' => 'mtr', 'Medtr4g021825' => 'mtr', 'Medtr4g064270' => 'mtr', 'Medtr4g064380' => 'mtr', 'Medtr7g062150' => 'mtr', 'MELO3C003138.2' => 'cme', 'MELO3C005187.2' => 'cme', 'MELO3C009252.2' => 'cme', 'MELO3C014481.2' => 'cme', 'MELO3C020616.2' => 'cme', 'MELO3C020617.2' => 'cme', 'MELO3C020618.2' => 'cme', 'Migut.G00328' => 'egut', 'Migut.J00320' => 'egut', 'Migut.L01000' => 'egut', 'Migut.L01953' => 'egut', 'MSTRG.10253' => 'ama', 'MSTRG.19077' => 'ama', 'MSTRG.26780' => 'ama', 'MSTRG.4023' => 'ama', 'MSTRG.5655' => 'ama', 'MSTRG.9992' => 'ama', 'Nitab4.5_0000043g0310' => 'nta', 'Nitab4.5_0000463g0080' => 'nta', 'Nitab4.5_0000705g0170' => 'nta', 'Nitab4.5_0001326g0060' => 'nta', 'Nitab4.5_0001628g0030' => 'nta', 'Nitab4.5_0002103g0110' => 'nta', 'Nitab4.5_0002946g0030' => 'nta', 'Nitab4.5_0004639g0030' => 'nta', 'Nn2g11149' => 'nnu', 'Nn2g13389' => 'nnu', 'Nn4g25326' => 'nnu', 'Nn4g26290' => 'nnu', 'Nn5g29865' => 'nnu', 'Oeu004163.1' => 'oeu', 'Oeu006901.1' => 'oeu', 'Oeu010096.1' => 'oeu', 'Oeu024340.1' => 'oeu', 'Oeu048369.1' => 'oeu', 'Os01g0973000' => 'osa', 'Os03g0273800' => 'osa', 'Os03g0701200' => 'osa', 'Os03g0834050' => 'osa', 'Os07g0634400' => 'osa', 'Peaxi162Scf00092g01414' => 'pax', 'Peaxi162Scf00165g00818' => 'pax', 'Peaxi162Scf00309g00516' => 'pax', 'Peaxi162Scf00774g00218' => 'pax', 'PGR004G1824' => 'pgr', 'PGR004G2606' => 'pgr', 'PGR031G2716' => 'pgr', 'PGR102G2460' => 'pgr', 'PGR142G2599' => 'pgr', 'PGSC0003DMG400000843' => 'stu', 'PGSC0003DMG400008829' => 'stu', 'PGSC0003DMG400030418' => 'stu', 'PGSC0003DMG400031834' => 'stu', 'PGSC0003DMG401028300' => 'stu', 'PGSC0003DMG402028300' => 'stu', 'Phvul.001G219300' => 'pvu', 'Phvul.007G056000' => 'pvu', 'Phvul.007G208000' => 'pvu', 'Phvul.008G119500' => 'pvu', 'Phvul.010G011200' => 'pvu', 'Phvul.010G014800' => 'pvu', 'Phvul.011G062900' => 'pvu', 'Phvul.L007043' => 'pvu', 'Potri.001G242300' => 'ptr', 'Potri.002G185300' => 'ptr', 'Potri.006G086900' => 'ptr', 'Potri.008G151700' => 'ptr', 'Potri.009G033500' => 'ptr', 'Potri.010G089300' => 'ptr', 'Potri.014G110800' => 'ptr', 'Pp3c27_8130' => 'ppa', 'Pp3c6_27410' => 'ppa', 'PRCOL_00001659' => 'pco', 'PRCOL_00001927' => 'pco', 'PRCOL_00003649' => 'pco', 'Prupe.1G011600' => 'ppe', 'Prupe.3G000800' => 'ppe', 'Prupe.3G001100' => 'ppe', 'Prupe.6G072700' => 'ppe', 'Prupe.6G072800' => 'ppe', 'Prupe.6G257300' => 'ppe', 'Prupe.8G033000' => 'ppe', 'Psat0s2633g0080' => 'psa', 'Psat0s3396g0080' => 'psa', 'Psat0s3396g0200' => 'psa', 'Psat3g139080' => 'psa', 'Psat5g285080' => 'psa', 'Psat6g157760' => 'psa', 'Psat6g208440' => 'psa', 'Psat7g215320' => 'psa', 'Psat7g215400' => 'psa', 'Psat7g235600' => 'psa', 'Psat7g235760' => 'psa', 'PSO063G4603' => 'pso', 'PSO210G0182' => 'pso', 'PSO210G0196' => 'pso', 'PSO339G0394' => 'pso', 'PSO339G4127' => 'pso', 'PSO513G0064' => 'pso', 'PSO761G0079' => 'pso', 'QL01p031003' => 'qlo', 'QL01p031078' => 'qlo', 'QL06p003004' => 'qlo', 'QL07p048731' => 'qlo', 'QL09p037427' => 'qlo', 'RcHm_v2.0_Chr3g0466361' => 'rch', 'RcHm_v2.0_Chr3g0485571' => 'rch', 'RcHm_v2.0_Chr4g0416551' => 'rch', 'RcHm_v2.0_Chr5g0065831' => 'rch', 'Rhsim01G0230500' => 'rsi', 'Rhsim05G0194000' => 'rsi', 'Rhsim08G0250400' => 'rsi', 'Sabra02G0131000' => 'sbr', 'Sabra06G0066300' => 'sbr', 'Sabra08G0115500' => 'sbr', 'Sabra09G0023900' => 'sbr', 'Sabra10G0054000' => 'sbr', 'Sabra14G0081500' => 'sbr', 'Sabra16G0147100' => 'sbr', 'SalBow2G2957' => 'sbo', 'SalBow4G3320' => 'sbo', 'SalBow8G1894' => 'sbo', 'Sc07g0007950' => 'sci', 'Sc12g0001360' => 'sci', 'Sc13g0004330' => 'sci', 'Sc20g0005010' => 'sci', 'Sed0000361' => 'sed', 'Sed0001706' => 'sed', 'Sed0002422' => 'sed', 'Sed0004029' => 'sed', 'Sed0004602' => 'sed', 'Sed0004943' => 'sed', 'Sed0008646' => 'sed', 'Sed0023313' => 'sed', 'Sed0024843' => 'sed', 'SEGI_00081' => 'sgi', 'SEGI_00947' => 'sgi', 'SEGI_04046' => 'sgi', 'SEGI_06880' => 'sgi', 'SEGI_09736' => 'sgi', 'SEGI_12741' => 'sgi', 'SEGI_14530' => 'sgi', 'SEGI_20705' => 'sgi', 'SEGI_26088' => 'sgi', 'SEGI_28323' => 'sgi', 'SEGI_33343' => 'sgi', 'SGA_v2.0_scaffold126G33775' => 'sas', 'SGA_v2.0_scaffold2G01337' => 'sas', 'SGA_v2.0_scaffold38G15006' => 'sas', 'SGA_v2.0_scaffold39G15264' => 'sas', 'SGA_v2.0_scaffold453G51880' => 'sas', 'SHI12696' => 'shi', 'SMO367G1096' => 'smo', 'Solyc01g068630.3' => 'sly', 'Solyc05g011880.3' => 'sly', 'Solyc06g076300.3' => 'sly', 'Solyc09g010940.4' => 'sly', 'Solyc09g075890.3' => 'sly', 'Sopen01g030560' => 'spe', 'Sopen05g006630' => 'spe', 'Sopen06g032720' => 'spe', 'Sopen09g005660' => 'spe', 'Sopen09g030690' => 'spe', 'Sp4g14540' => 'spa', 'Sp4g20030' => 'spa', 'Sp5g01320' => 'spa', 'Sp6g21170' => 'spa', 'Sp6g21180' => 'spa', 'Sp6g21190' => 'spa', 'Sp6g40220' => 'spa', 'TAR362G0122' => 'tar', 'TAR362G1338' => 'tar', 'TAR369G0590' => 'tar', 'TAR371G0824' => 'tar', 'TAR622G1429' => 'tar', 'TAR623G0734' => 'tar', 'TAR625G0441' => 'tar', 'TAR629G0976' => 'tar', 'TAR633G1195' => 'tar', 'TAR636G2660' => 'tar', 'THA.LOC104799440' => 'tha', 'THA.LOC104800966' => 'tha', 'THA.LOC104806559' => 'tha', 'THA.LOC104810765' => 'tha', 'THA.LOC104816266' => 'tha', 'THA.LOC104817419' => 'tha', 'THA.LOC104827021' => 'tha', 'Thecc.01G327400' => 'tca', 'Thecc.04G229200' => 'tca', 'Thecc.05G037400' => 'tca', 'Thecc.09G318600' => 'tca', 'Thecc.09G318700' => 'tca', 'Thhalv10006238m.g' => 'esa', 'Thhalv10014321m.g' => 'esa', 'Thhalv10014335m.g' => 'esa', 'Thhalv10015826m.g' => 'esa', 'Thhalv10017107m.g' => 'esa', 'Thhalv10017180m.g' => 'esa', 'Thhalv10029339m.g' => 'esa', 'TPR.G1699' => 'tpr', 'TPR.G23609' => 'tpr', 'TPR.G3081' => 'tpr', 'TPR.G40397' => 'tpr', 'TPR.G5522' => 'tpr', 'TPR.G5618' => 'tpr', 'TPR.G5626' => 'tpr', 'TWI09G1632' => 'twi', 'TWI23G1230' => 'twi', 'TWI53G1064' => 'twi', 'TWI59G0751' => 'twi', 'TWI74G0947' => 'twi', 'TWI77G0337' => 'twi', 'TWI79G1254' => 'twi', 'unitig_0.g2341' => 'ugi', 'unitig_26.g10006' => 'ugi', 'unitig_26.g10008' => 'ugi', 'unitig_26.g9192' => 'ugi', 'vmacro14547' => 'vma', 'vmacro15333' => 'vma', 'vmacro18743' => 'vma', 'vmacro20166' => 'vma', 'VMungo0331G0523' => 'vmu', 'VMungo0331G1202' => 'vmu', 'VMungo0720G1228' => 'vmu', 'VMungo0720G1514' => 'vmu', 'VMungo1080G0169' => 'vmu', 'VMungo1127G1475' => 'vmu', 'VMungo1383G1208' => 'vmu', 'VMungo1383G1698' => 'vmu', 'Zm00001eb012270' => 'zma', 'Zm00001eb054100' => 'zma', 'Zm00001eb063350' => 'zma', 'Zm00001eb328560' => 'zma', 'Zm00001eb342820' => 'zma', 'Zm00001eb362210' => 'zma', 'Zm00001eb397730' => 'zma', 'Zm00001eb399750' => 'zma' ), 'gf_id' => 'HOM05D000959', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000959' ), 'data_identifier' => 'HOM05D000959', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000959', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '622', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p07100' => 'bna', 'A03p11720' => 'bna', 'A05p08300' => 'bna', 'A05p13380' => 'bna', 'A09p54130' => 'bna', 'A10p16690' => 'bna', 'A10p16700' => 'bna', 'A10p33390' => 'bna', 'Aa31LG10G16020' => 'aar', 'Aa31LG1G11810' => 'aar', 'Aa31LG1G11830' => 'aar', 'Aa31LG1G22510' => 'aar', 'Aa31LG5G4890' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5793' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2310' => 'aag', 'Actinidia08499' => 'ach', 'Actinidia11262' => 'ach', 'Actinidia23926' => 'ach', 'Actinidia34420' => 'ach', 'Actinidia36970' => 'ach', 'Ah.02g111220' => 'amhyb', 'Ah.15g097750' => 'amhyb', 'AL4G27500' => 'aly', 'AL6G11470' => 'aly', 'AL8G35950' => 'aly', 'AL8G35960' => 'aly', 'AL8G35970' => 'aly', 'Aqoxy1G00912' => 'aox', 'Aqoxy2G02253' => 'aox', 'Aqoxy2G02411' => 'aox', 'Aqoxy5G00485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BZ66YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K8ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM4FUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6BF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HFV7XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25JBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0YNNV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MAKK6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P70IT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP2Z6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V61LZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YWP64R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3S9AI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7PGHH' => 'arhy', 'AT2G32150' => 'ath', 'AT3G62040' => 'ath', 'AT5G02230' => 'ath', 'AT5G59480' => 'ath', 'AT5G59490' => 'ath', 'ATR0332G060' => 'atr', 'ATR0559G190' => 'atr', 'ATR0693G294' => 'atr', 'Atru.chr3.3975' => 'acertr', 'Atru.chr3.3976' => 'acertr', 'Atru.chr3.3977' => 'acertr', 'Atru.chr4.2498' => 'acertr', 'Atru.chr5.838' => 'acertr', 'Atru.chr8.1990' => 'acertr', 'Atru.chr8.1991' => 'acertr', 'Atru.chr8.1992' => 'acertr', 'AUR62001759' => 'cqu', 'AUR62009545' => 'cqu', 'AUR62010474' => 'cqu', 'AUR62025820' => 'cqu', 'AUR62030422' => 'cqu', 'AUR62033605' => 'cqu', 'AUR62038615' => 'cqu', 'AUR62041347' => 'cqu', 'BcaB01g04574' => 'bca', 'BcaB02g09263' => 'bca', 'BcaB02g10453' => 'bca', 'BcaB05g22513' => 'bca', 'BcaB08g36253' => 'bca', 'BcaB08g36254' => 'bca', 'BcaC01g06519' => 'bca', 'BcaC02g11889' => 'bca', 'BcaC03g14010' => 'bca', 'BcaC03g18439' => 'bca', 'BcaC04g19765' => 'bca', 'BcaC09g48432' => 'bca', 'BcaNung07302' => 'bca', 'BolC2t06040H' => 'bol', 'BolC2t07346H' => 'bol', 'BolC3t13817H' => 'bol', 'BolC4t22625H' => 'bol', 'BolC4t23297H' => 'bol', 'BolC8t51278H' => 'bol', 'BolC9t58050H' => 'bol', 'BolC9t58051H' => 'bol', 'BolC9t60163H' => 'bol', 'BraA02t04712Z' => 'bra', 'BraA02t05791Z' => 'bra', 'BraA03t10483Z' => 'bra', 'BraA05t19795Z' => 'bra', 'BraA05t20276Z' => 'bra', 'BraA09t40827Z' => 'bra', 'BraA10t43750Z' => 'bra', 'BraA10t43751Z' => 'bra', 'BraA10t45370Z' => 'bra', 'C02p00400' => 'bna', 'C02p12460' => 'bna', 'C03p13680' => 'bna', 'C04p10270' => 'bna', 'C04p17500' => 'bna', 'C08p37010' => 'bna', 'C09p51880' => 'bna', 'C09p51890' => 'bna', 'C09p74300' => 'bna', 'CAN.G179.26' => 'can', 'CAN.G3384.1' => 'can', 'CAN.G394.68' => 'can', 'CAN.G907.13' => 'can', 'CANSAT11G0012' => 'cansat', 'CANSAT25G1586' => 'cansat', 'CANSAT35G0735' => 'cansat', 'CANSAT54G0556' => 'cansat', 'CANSAT64G0356' => 'cansat', 'CANSAT78G2042' => 'cansat', 'CARHR125920' => 'chi', 'CARHR131910' => 'chi', 'CARHR172390' => 'chi', 'CARHR211140' => 'chi', 'CARHR285850' => 'chi', 'CARHR285860' => 'chi', 'Carub.0004s1347' => 'cru', 'Carub.0004s1960' => 'cru', 'Carub.0005s2880' => 'cru', 'Carub.0006s0107' => 'cru', 'Carub.0008s2015' => 'cru', 'Carub.0008s2016' => 'cru', 'Carub.0008s2017' => 'cru', 'Ca_01315_v3' => 'car', 'Ca_05063_v3' => 'car', 'Ca_10231_v3' => 'car', 'Ca_10913_v3' => 'car', 'Ca_19156_v3' => 'car', 'Ca_23644_v3' => 'car', 'Ca_26735_v3' => 'car', 'Cc01_g13130' => 'ccan', 'Cc02_g21690' => 'ccan', 'Cc03_g03600' => 'ccan', 'Cc06_g02510' => 'ccan', 'CDE02G1265' => 'cde', 'CDE05G0415' => 'cde', 'CDE08G1082' => 'cde', 'Cfa005780' => 'cfa', 'Cfa011522' => 'cfa', 'Cfa011523' => 'cfa', 'Cfa015627' => 'cfa', 'Cfa017359' => 'cfa', 'Ciclev10005687m.g' => 'ccl', 'Ciclev10012173m.g' => 'ccl', 'Ciclev10021621m.g' => 'ccl', 'Ciclev10028968m.g' => 'ccl', 'Ciclev10029907m.g' => 'ccl', 'CiPaw.01G164800' => 'cil', 'CiPaw.07G083700' => 'cil', 'CiPaw.07G127000' => 'cil', 'CiPaw.07G136900' => 'cil', 'CiPaw.08G081700' => 'cil', 'CiPaw.09G194600' => 'cil', 'CiPaw.10G146500' => 'cil', 'CiPaw.13G091500' => 'cil', 'CiPaw.13G091600' => 'cil', 'ClCG00G003390' => 'cla', 'ClCG01G007220' => 'cla', 'ClCG03G001370' => 'cla', 'ClCG04G008100' => 'cla', 'ClCG06G006110' => 'cla', 'ClCG06G006130' => 'cla', 'ClCG10G021210' => 'cla', 'COL.COLO4_07648' => 'col', 'COL.COLO4_07650' => 'col', 'COL.COLO4_07651' => 'col', 'COL.COLO4_14780' => 'col', 'COL.COLO4_18546' => 'col', 'COL.COLO4_18547' => 'col', 'COL.COLO4_23103' => 'col', 'COL.COLO4_30419' => 'col', 'COL.COLO4_34232' => 'col', 'Cpa.g.sc169.20' => 'cpa', 'Cpa.g.sc57.45' => 'cpa', 'Cpa.g.sc58.124' => 'cpa', 'Cpa.g.sc58.125' => 'cpa', 'Cpa.g.sc81.118' => 'cpa', 'Cpa.g.sc81.119' => 'cpa', 'Cre12.g524700' => 'cre', 'CsaV3_1G034430' => 'csa', 'CsaV3_1G034440' => 'csa', 'CsaV3_1G034450' => 'csa', 'CsaV3_3G034830' => 'csa', 'CsaV3_4G025090' => 'csa', 'CsaV3_5G018660' => 'csa', 'CsaV3_6G038160' => 'csa', 'CSS0003447' => 'camsi', 'CSS0017840' => 'camsi', 'CSS0019260' => 'camsi', 'CSS0040375' => 'camsi', 'CSS0042533' => 'camsi', 'DCAR_005960' => 'dca', 'DCAR_012104' => 'dca', 'DCAR_012105' => 'dca', 'DCAR_012293' => 'dca', 'DCAR_015632' => 'dca', 'DCAR_024602' => 'dca', 'DCAR_028752' => 'dca', 'Dinv06261' => 'din', 'Dinv13982' => 'din', 'Dinv17029' => 'din', 'Dinv18463' => 'din', 'Dinv33181' => 'din', 'Dinv35585' => 'din', 'Dinv37161' => 'din', 'Dinv42977' => 'din', 'Dinv43122' => 'din', 'Dinv44517' => 'din', 'Duzib093G0256' => 'dzi', 'Duzib106G1254' => 'dzi', 'Duzib128G1789' => 'dzi', 'Duzib133G0633' => 'dzi', 'Duzib138G0510' => 'dzi', 'Duzib150G1084' => 'dzi', 'Duzib168G0488' => 'dzi', 'Duzib168G1523' => 'dzi', 'Duzib170G0133' => 'dzi', 'ECA234G1433' => 'eca', 'ECA236G1432' => 'eca', 'ECA236G2256' => 'eca', 'ECA236G2365' => 'eca', 'ECA236G4830' => 'eca', 'ECA248G1505' => 'eca', 'EL10Ac3g06431' => 'bvu', 'EL10Ac5g12577' => 'bvu', 'EL10Ac6g13533' => 'bvu', 'EL10Ac7g16045' => 'bvu', 'Eucgr.A01281' => 'egr', 'Eucgr.B02326' => 'egr', 'Eucgr.H03532' => 'egr', 'Eucgr.K00553' => 'egr', 'Eucgr.K03116' => 'egr', 'FAN02G3963' => 'fan', 'FAN05G0438' => 'fan', 'FAN09G2434' => 'fan', 'FAN12G3984' => 'fan', 'FAN14G0798' => 'fan', 'FAN17G0652' => 'fan', 'FAN19G1988' => 'fan', 'FAN22G0632' => 'fan', 'FAN23G0387' => 'fan', 'FAN26G1323' => 'fan', 'FAN28G0666' => 'fan', 'FvH4_1g26080' => 'fve', 'FvH4_3g36780' => 'fve', 'FvH4_4g15270' => 'fve', 'FvH4_6g13490' => 'fve', 'Glyma.01G098700' => 'gma', 'Glyma.03G065900' => 'gma', 'Glyma.03G073754' => 'gma', 'Glyma.03G073758' => 'gma', 'Glyma.03G083200' => 'gma', 'Glyma.03G225500' => 'gma', 'Glyma.05G037766' => 'gma', 'Glyma.07G133500' => 'gma', 'Glyma.10G139400' => 'gma', 'Glyma.10G248900' => 'gma', 'Glyma.11G137800' => 'gma', 'Glyma.12G061300' => 'gma', 'Glyma.13G337900' => 'gma', 'Glyma.15G036600' => 'gma', 'Glyma.18G182800' => 'gma', 'Glyma.19G222500' => 'gma', 'Glyma.20G144800' => 'gma', 'Gohir.A01G222000' => 'ghi', 'Gohir.A03G044000' => 'ghi', 'Gohir.A03G044100' => 'ghi', 'Gohir.A04G083100' => 'ghi', 'Gohir.A07G127200' => 'ghi', 'Gohir.A07G132400' => 'ghi', 'Gohir.A08G000700' => 'ghi', 'Gohir.A11G327300' => 'ghi', 'Gohir.D01G211500' => 'ghi', 'Gohir.D03G123400' => 'ghi', 'Gohir.D03G123500' => 'ghi', 'Gohir.D04G121800' => 'ghi', 'Gohir.D07G131500' => 'ghi', 'Gohir.D07G136600' => 'ghi', 'Gohir.D08G011600' => 'ghi', 'Gohir.D11G346200' => 'ghi', 'Gorai.001G142800' => 'gra', 'Gorai.001G148700' => 'gra', 'Gorai.002G257300' => 'gra', 'Gorai.003G130000' => 'gra', 'Gorai.003G130100' => 'gra', 'Gorai.004G005300' => 'gra', 'Gorai.007G376500' => 'gra', 'Gorai.012G104700' => 'gra', 'GSVIVG01017946001' => 'vvi', 'GSVIVG01024928001' => 'vvi', 'GSVIVG01028227001' => 'vvi', 'GSVIVG01034151001' => 'vvi', 'HanXRQChr05g0135031' => 'han', 'HanXRQChr05g0135041' => 'han', 'HanXRQChr05g0140021' => 'han', 'HanXRQChr06g0178981' => 'han', 'HanXRQChr07g0188251' => 'han', 'HanXRQChr08g0235311' => 'han', 'HanXRQChr09g0271011' => 'han', 'HanXRQChr10g0293321' => 'han', 'HanXRQChr13g0388171' => 'han', 'Haze_00916' => 'cav', 'Haze_05063' => 'cav', 'Haze_20814' => 'cav', 'Haze_24128' => 'cav', 'Hma1.2p1_0745F.1_g212010' => 'hma', 'Hma1.2p1_0757F.1_g213260' => 'hma', 'Hma1.2p1_0936F.1_g238840' => 'hma', 'Hma1.2p1_1735F.1_g299890' => 'hma', 'Hma1.2p1_1861F.1_g305685' => 'hma', 'HPP92_003397' => 'vpl', 'HPP92_012597' => 'vpl', 'HPP92_015520' => 'vpl', 'HPP92_015539' => 'vpl', 'HPP92_020373' => 'vpl', 'Hund04938' => 'sun', 'Hund10677' => 'sun', 'Hund11033' => 'sun', 'Hund12155' => 'sun', 'Lalb_Chr01g0022551' => 'lal', 'Lalb_Chr03g0042341' => 'lal', 'Lalb_Chr07g0192931' => 'lal', 'Lalb_Chr12g0209551' => 'lal', 'Lalb_Chr19g0125251' => 'lal', 'Lalb_Chr19g0137891' => 'lal', 'Lalb_Chr21g0304641' => 'lal', 'Lalb_Chr21g0309881' => 'lal', 'Lj1A5T12' => 'lonja', 'Lj1C148G10' => 'lonja', 'Lj2A93T83' => 'lonja', 'Lj3A738G68' => 'lonja', 'Lj3C966T1' => 'lonja', 'Lj3g0018958' => 'lja', 'Lj3g0021831' => 'lja', 'Lj3g0025443' => 'lja', 'Lj4g0026809' => 'lja', 'Lj5g0012558' => 'lja', 'Lj5g0021586' => 'lja', 'Lsat_1_v5_gn_5_156840' => 'lsa', 'Lsat_1_v5_gn_8_73460' => 'lsa', 'Lsat_1_v5_gn_8_73481' => 'lsa', 'Lsat_1_v5_gn_9_31601' => 'lsa', 'Lsat_1_v5_gn_9_77320' => 'lsa', 'Manes.01G171300' => 'mes', 'Manes.01G171400' => 'mes', 'Manes.01G236100' => 'mes', 'Manes.02G130500' => 'mes', 'Manes.02G130600' => 'mes', 'Manes.03G180200' => 'mes', 'Manes.05G007000' => 'mes', 'Manes.08G084400' => 'mes', 'Manes.09G092600' => 'mes', 'Manes.15G027900' => 'mes', 'MBI04_g40948_MAGBIO' => 'mbi', 'MBI14_g12123_MAGBIO' => 'mbi', 'MBI18_g28915_MAGBIO' => 'mbi', 'MCO09G053' => 'mco', 'MCO11G782' => 'mco', 'MCO15G215' => 'mco', 'MD03G1088500' => 'mdo', 'MD03G1088600' => 'mdo', 'MD04G1130800' => 'mdo', 'MD09G1291700' => 'mdo', 'MD11G1097500' => 'mdo', 'MD11G1097600' => 'mdo', 'MD12G1143900' => 'mdo', 'MD13G1191400' => 'mdo', 'MD16G1191500' => 'mdo', 'Medtr1g085570' => 'mtr', 'Medtr1g104610' => 'mtr', 'Medtr2g097520' => 'mtr', 'Medtr4g021800' => 'mtr', 'Medtr4g021825' => 'mtr', 'Medtr4g064270' => 'mtr', 'Medtr4g064380' => 'mtr', 'Medtr7g062150' => 'mtr', 'MELO3C003138.2' => 'cme', 'MELO3C005187.2' => 'cme', 'MELO3C009252.2' => 'cme', 'MELO3C014481.2' => 'cme', 'MELO3C020616.2' => 'cme', 'MELO3C020617.2' => 'cme', 'MELO3C020618.2' => 'cme', 'Migut.G00328' => 'egut', 'Migut.J00320' => 'egut', 'Migut.L01000' => 'egut', 'Migut.L01953' => 'egut', 'MSTRG.10253' => 'ama', 'MSTRG.19077' => 'ama', 'MSTRG.26780' => 'ama', 'MSTRG.4023' => 'ama', 'MSTRG.5655' => 'ama', 'MSTRG.9992' => 'ama', 'Nitab4.5_0000043g0310' => 'nta', 'Nitab4.5_0000463g0080' => 'nta', 'Nitab4.5_0000705g0170' => 'nta', 'Nitab4.5_0001326g0060' => 'nta', 'Nitab4.5_0001628g0030' => 'nta', 'Nitab4.5_0002103g0110' => 'nta', 'Nitab4.5_0002946g0030' => 'nta', 'Nitab4.5_0004639g0030' => 'nta', 'Nn2g11149' => 'nnu', 'Nn2g13389' => 'nnu', 'Nn4g25326' => 'nnu', 'Nn4g26290' => 'nnu', 'Nn5g29865' => 'nnu', 'Oeu004163.1' => 'oeu', 'Oeu006901.1' => 'oeu', 'Oeu010096.1' => 'oeu', 'Oeu024340.1' => 'oeu', 'Oeu048369.1' => 'oeu', 'Os01g0973000' => 'osa', 'Os03g0273800' => 'osa', 'Os03g0701200' => 'osa', 'Os03g0834050' => 'osa', 'Os07g0634400' => 'osa', 'Peaxi162Scf00092g01414' => 'pax', 'Peaxi162Scf00165g00818' => 'pax', 'Peaxi162Scf00309g00516' => 'pax', 'Peaxi162Scf00774g00218' => 'pax', 'PGR004G1824' => 'pgr', 'PGR004G2606' => 'pgr', 'PGR031G2716' => 'pgr', 'PGR102G2460' => 'pgr', 'PGR142G2599' => 'pgr', 'PGSC0003DMG400000843' => 'stu', 'PGSC0003DMG400008829' => 'stu', 'PGSC0003DMG400030418' => 'stu', 'PGSC0003DMG400031834' => 'stu', 'PGSC0003DMG401028300' => 'stu', 'PGSC0003DMG402028300' => 'stu', 'Phvul.001G219300' => 'pvu', 'Phvul.007G056000' => 'pvu', 'Phvul.007G208000' => 'pvu', 'Phvul.008G119500' => 'pvu', 'Phvul.010G011200' => 'pvu', 'Phvul.010G014800' => 'pvu', 'Phvul.011G062900' => 'pvu', 'Phvul.L007043' => 'pvu', 'Potri.001G242300' => 'ptr', 'Potri.002G185300' => 'ptr', 'Potri.006G086900' => 'ptr', 'Potri.008G151700' => 'ptr', 'Potri.009G033500' => 'ptr', 'Potri.010G089300' => 'ptr', 'Potri.014G110800' => 'ptr', 'Pp3c27_8130' => 'ppa', 'Pp3c6_27410' => 'ppa', 'PRCOL_00001659' => 'pco', 'PRCOL_00001927' => 'pco', 'PRCOL_00003649' => 'pco', 'Prupe.1G011600' => 'ppe', 'Prupe.3G000800' => 'ppe', 'Prupe.3G001100' => 'ppe', 'Prupe.6G072700' => 'ppe', 'Prupe.6G072800' => 'ppe', 'Prupe.6G257300' => 'ppe', 'Prupe.8G033000' => 'ppe', 'Psat0s2633g0080' => 'psa', 'Psat0s3396g0080' => 'psa', 'Psat0s3396g0200' => 'psa', 'Psat3g139080' => 'psa', 'Psat5g285080' => 'psa', 'Psat6g157760' => 'psa', 'Psat6g208440' => 'psa', 'Psat7g215320' => 'psa', 'Psat7g215400' => 'psa', 'Psat7g235600' => 'psa', 'Psat7g235760' => 'psa', 'PSO063G4603' => 'pso', 'PSO210G0182' => 'pso', 'PSO210G0196' => 'pso', 'PSO339G0394' => 'pso', 'PSO339G4127' => 'pso', 'PSO513G0064' => 'pso', 'PSO761G0079' => 'pso', 'QL01p031003' => 'qlo', 'QL01p031078' => 'qlo', 'QL06p003004' => 'qlo', 'QL07p048731' => 'qlo', 'QL09p037427' => 'qlo', 'RcHm_v2.0_Chr3g0466361' => 'rch', 'RcHm_v2.0_Chr3g0485571' => 'rch', 'RcHm_v2.0_Chr4g0416551' => 'rch', 'RcHm_v2.0_Chr5g0065831' => 'rch', 'Rhsim01G0230500' => 'rsi', 'Rhsim05G0194000' => 'rsi', 'Rhsim08G0250400' => 'rsi', 'Sabra02G0131000' => 'sbr', 'Sabra06G0066300' => 'sbr', 'Sabra08G0115500' => 'sbr', 'Sabra09G0023900' => 'sbr', 'Sabra10G0054000' => 'sbr', 'Sabra14G0081500' => 'sbr', 'Sabra16G0147100' => 'sbr', 'SalBow2G2957' => 'sbo', 'SalBow4G3320' => 'sbo', 'SalBow8G1894' => 'sbo', 'Sc07g0007950' => 'sci', 'Sc12g0001360' => 'sci', 'Sc13g0004330' => 'sci', 'Sc20g0005010' => 'sci', 'Sed0000361' => 'sed', 'Sed0001706' => 'sed', 'Sed0002422' => 'sed', 'Sed0004029' => 'sed', 'Sed0004602' => 'sed', 'Sed0004943' => 'sed', 'Sed0008646' => 'sed', 'Sed0023313' => 'sed', 'Sed0024843' => 'sed', 'SEGI_00081' => 'sgi', 'SEGI_00947' => 'sgi', 'SEGI_04046' => 'sgi', 'SEGI_06880' => 'sgi', 'SEGI_09736' => 'sgi', 'SEGI_12741' => 'sgi', 'SEGI_14530' => 'sgi', 'SEGI_20705' => 'sgi', 'SEGI_26088' => 'sgi', 'SEGI_28323' => 'sgi', 'SEGI_33343' => 'sgi', 'SGA_v2.0_scaffold126G33775' => 'sas', 'SGA_v2.0_scaffold2G01337' => 'sas', 'SGA_v2.0_scaffold38G15006' => 'sas', 'SGA_v2.0_scaffold39G15264' => 'sas', 'SGA_v2.0_scaffold453G51880' => 'sas', 'SHI12696' => 'shi', 'SMO367G1096' => 'smo', 'Solyc01g068630.3' => 'sly', 'Solyc05g011880.3' => 'sly', 'Solyc06g076300.3' => 'sly', 'Solyc09g010940.4' => 'sly', 'Solyc09g075890.3' => 'sly', 'Sopen01g030560' => 'spe', 'Sopen05g006630' => 'spe', 'Sopen06g032720' => 'spe', 'Sopen09g005660' => 'spe', 'Sopen09g030690' => 'spe', 'Sp4g14540' => 'spa', 'Sp4g20030' => 'spa', 'Sp5g01320' => 'spa', 'Sp6g21170' => 'spa', 'Sp6g21180' => 'spa', 'Sp6g21190' => 'spa', 'Sp6g40220' => 'spa', 'TAR362G0122' => 'tar', 'TAR362G1338' => 'tar', 'TAR369G0590' => 'tar', 'TAR371G0824' => 'tar', 'TAR622G1429' => 'tar', 'TAR623G0734' => 'tar', 'TAR625G0441' => 'tar', 'TAR629G0976' => 'tar', 'TAR633G1195' => 'tar', 'TAR636G2660' => 'tar', 'THA.LOC104799440' => 'tha', 'THA.LOC104800966' => 'tha', 'THA.LOC104806559' => 'tha', 'THA.LOC104810765' => 'tha', 'THA.LOC104816266' => 'tha', 'THA.LOC104817419' => 'tha', 'THA.LOC104827021' => 'tha', 'Thecc.01G327400' => 'tca', 'Thecc.04G229200' => 'tca', 'Thecc.05G037400' => 'tca', 'Thecc.09G318600' => 'tca', 'Thecc.09G318700' => 'tca', 'Thhalv10006238m.g' => 'esa', 'Thhalv10014321m.g' => 'esa', 'Thhalv10014335m.g' => 'esa', 'Thhalv10015826m.g' => 'esa', 'Thhalv10017107m.g' => 'esa', 'Thhalv10017180m.g' => 'esa', 'Thhalv10029339m.g' => 'esa', 'TPR.G1699' => 'tpr', 'TPR.G23609' => 'tpr', 'TPR.G3081' => 'tpr', 'TPR.G40397' => 'tpr', 'TPR.G5522' => 'tpr', 'TPR.G5618' => 'tpr', 'TPR.G5626' => 'tpr', 'TWI09G1632' => 'twi', 'TWI23G1230' => 'twi', 'TWI53G1064' => 'twi', 'TWI59G0751' => 'twi', 'TWI74G0947' => 'twi', 'TWI77G0337' => 'twi', 'TWI79G1254' => 'twi', 'unitig_0.g2341' => 'ugi', 'unitig_26.g10006' => 'ugi', 'unitig_26.g10008' => 'ugi', 'unitig_26.g9192' => 'ugi', 'vmacro14547' => 'vma', 'vmacro15333' => 'vma', 'vmacro18743' => 'vma', 'vmacro20166' => 'vma', 'VMungo0331G0523' => 'vmu', 'VMungo0331G1202' => 'vmu', 'VMungo0720G1228' => 'vmu', 'VMungo0720G1514' => 'vmu', 'VMungo1080G0169' => 'vmu', 'VMungo1127G1475' => 'vmu', 'VMungo1383G1208' => 'vmu', 'VMungo1383G1698' => 'vmu', 'Zm00001eb012270' => 'zma', 'Zm00001eb054100' => 'zma', 'Zm00001eb063350' => 'zma', 'Zm00001eb328560' => 'zma', 'Zm00001eb342820' => 'zma', 'Zm00001eb362210' => 'zma', 'Zm00001eb397730' => 'zma', 'Zm00001eb399750' => 'zma' ) $gf_id = 'HOM05D000959' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000959' ) $data_identifier = 'HOM05D000959' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 5, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 5, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 10, 'mbi' => (int) 3, 'mco' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 2, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 3, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 11, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399750' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000959', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '622', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p07100' => 'bna', 'A03p11720' => 'bna', 'A05p08300' => 'bna', 'A05p13380' => 'bna', 'A09p54130' => 'bna', 'A10p16690' => 'bna', 'A10p16700' => 'bna', 'A10p33390' => 'bna', 'Aa31LG10G16020' => 'aar', 'Aa31LG1G11810' => 'aar', 'Aa31LG1G11830' => 'aar', 'Aa31LG1G22510' => 'aar', 'Aa31LG5G4890' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5793' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2310' => 'aag', 'Actinidia08499' => 'ach', 'Actinidia11262' => 'ach', 'Actinidia23926' => 'ach', 'Actinidia34420' => 'ach', 'Actinidia36970' => 'ach', 'Ah.02g111220' => 'amhyb', 'Ah.15g097750' => 'amhyb', 'AL4G27500' => 'aly', 'AL6G11470' => 'aly', 'AL8G35950' => 'aly', 'AL8G35960' => 'aly', 'AL8G35970' => 'aly', 'Aqoxy1G00912' => 'aox', 'Aqoxy2G02253' => 'aox', 'Aqoxy2G02411' => 'aox', 'Aqoxy5G00485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BZ66YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K8ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM4FUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6BF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HFV7XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25JBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0YNNV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MAKK6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P70IT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP2Z6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V61LZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YWP64R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3S9AI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7PGHH' => 'arhy', 'AT2G32150' => 'ath', 'AT3G62040' => 'ath', 'AT5G02230' => 'ath', 'AT5G59480' => 'ath', 'AT5G59490' => 'ath', 'ATR0332G060' => 'atr', 'ATR0559G190' => 'atr', 'ATR0693G294' => 'atr', 'Atru.chr3.3975' => 'acertr', 'Atru.chr3.3976' => 'acertr', 'Atru.chr3.3977' => 'acertr', 'Atru.chr4.2498' => 'acertr', 'Atru.chr5.838' => 'acertr', 'Atru.chr8.1990' => 'acertr', 'Atru.chr8.1991' => 'acertr', 'Atru.chr8.1992' => 'acertr', 'AUR62001759' => 'cqu', 'AUR62009545' => 'cqu', 'AUR62010474' => 'cqu', 'AUR62025820' => 'cqu', 'AUR62030422' => 'cqu', 'AUR62033605' => 'cqu', 'AUR62038615' => 'cqu', 'AUR62041347' => 'cqu', 'BcaB01g04574' => 'bca', 'BcaB02g09263' => 'bca', 'BcaB02g10453' => 'bca', 'BcaB05g22513' => 'bca', 'BcaB08g36253' => 'bca', 'BcaB08g36254' => 'bca', 'BcaC01g06519' => 'bca', 'BcaC02g11889' => 'bca', 'BcaC03g14010' => 'bca', 'BcaC03g18439' => 'bca', 'BcaC04g19765' => 'bca', 'BcaC09g48432' => 'bca', 'BcaNung07302' => 'bca', 'BolC2t06040H' => 'bol', 'BolC2t07346H' => 'bol', 'BolC3t13817H' => 'bol', 'BolC4t22625H' => 'bol', 'BolC4t23297H' => 'bol', 'BolC8t51278H' => 'bol', 'BolC9t58050H' => 'bol', 'BolC9t58051H' => 'bol', 'BolC9t60163H' => 'bol', 'BraA02t04712Z' => 'bra', 'BraA02t05791Z' => 'bra', 'BraA03t10483Z' => 'bra', 'BraA05t19795Z' => 'bra', 'BraA05t20276Z' => 'bra', 'BraA09t40827Z' => 'bra', 'BraA10t43750Z' => 'bra', 'BraA10t43751Z' => 'bra', 'BraA10t45370Z' => 'bra', 'C02p00400' => 'bna', 'C02p12460' => 'bna', 'C03p13680' => 'bna', 'C04p10270' => 'bna', 'C04p17500' => 'bna', 'C08p37010' => 'bna', 'C09p51880' => 'bna', 'C09p51890' => 'bna', 'C09p74300' => 'bna', 'CAN.G179.26' => 'can', 'CAN.G3384.1' => 'can', 'CAN.G394.68' => 'can', 'CAN.G907.13' => 'can', 'CANSAT11G0012' => 'cansat', 'CANSAT25G1586' => 'cansat', 'CANSAT35G0735' => 'cansat', 'CANSAT54G0556' => 'cansat', 'CANSAT64G0356' => 'cansat', 'CANSAT78G2042' => 'cansat', 'CARHR125920' => 'chi', 'CARHR131910' => 'chi', 'CARHR172390' => 'chi', 'CARHR211140' => 'chi', 'CARHR285850' => 'chi', 'CARHR285860' => 'chi', 'Carub.0004s1347' => 'cru', 'Carub.0004s1960' => 'cru', 'Carub.0005s2880' => 'cru', 'Carub.0006s0107' => 'cru', 'Carub.0008s2015' => 'cru', 'Carub.0008s2016' => 'cru', 'Carub.0008s2017' => 'cru', 'Ca_01315_v3' => 'car', 'Ca_05063_v3' => 'car', 'Ca_10231_v3' => 'car', 'Ca_10913_v3' => 'car', 'Ca_19156_v3' => 'car', 'Ca_23644_v3' => 'car', 'Ca_26735_v3' => 'car', 'Cc01_g13130' => 'ccan', 'Cc02_g21690' => 'ccan', 'Cc03_g03600' => 'ccan', 'Cc06_g02510' => 'ccan', 'CDE02G1265' => 'cde', 'CDE05G0415' => 'cde', 'CDE08G1082' => 'cde', 'Cfa005780' => 'cfa', 'Cfa011522' => 'cfa', 'Cfa011523' => 'cfa', 'Cfa015627' => 'cfa', 'Cfa017359' => 'cfa', 'Ciclev10005687m.g' => 'ccl', 'Ciclev10012173m.g' => 'ccl', 'Ciclev10021621m.g' => 'ccl', 'Ciclev10028968m.g' => 'ccl', 'Ciclev10029907m.g' => 'ccl', 'CiPaw.01G164800' => 'cil', 'CiPaw.07G083700' => 'cil', 'CiPaw.07G127000' => 'cil', 'CiPaw.07G136900' => 'cil', 'CiPaw.08G081700' => 'cil', 'CiPaw.09G194600' => 'cil', 'CiPaw.10G146500' => 'cil', 'CiPaw.13G091500' => 'cil', 'CiPaw.13G091600' => 'cil', 'ClCG00G003390' => 'cla', 'ClCG01G007220' => 'cla', 'ClCG03G001370' => 'cla', 'ClCG04G008100' => 'cla', 'ClCG06G006110' => 'cla', 'ClCG06G006130' => 'cla', 'ClCG10G021210' => 'cla', 'COL.COLO4_07648' => 'col', 'COL.COLO4_07650' => 'col', 'COL.COLO4_07651' => 'col', 'COL.COLO4_14780' => 'col', 'COL.COLO4_18546' => 'col', 'COL.COLO4_18547' => 'col', 'COL.COLO4_23103' => 'col', 'COL.COLO4_30419' => 'col', 'COL.COLO4_34232' => 'col', 'Cpa.g.sc169.20' => 'cpa', 'Cpa.g.sc57.45' => 'cpa', 'Cpa.g.sc58.124' => 'cpa', 'Cpa.g.sc58.125' => 'cpa', 'Cpa.g.sc81.118' => 'cpa', 'Cpa.g.sc81.119' => 'cpa', 'Cre12.g524700' => 'cre', 'CsaV3_1G034430' => 'csa', 'CsaV3_1G034440' => 'csa', 'CsaV3_1G034450' => 'csa', 'CsaV3_3G034830' => 'csa', 'CsaV3_4G025090' => 'csa', 'CsaV3_5G018660' => 'csa', 'CsaV3_6G038160' => 'csa', 'CSS0003447' => 'camsi', 'CSS0017840' => 'camsi', 'CSS0019260' => 'camsi', 'CSS0040375' => 'camsi', 'CSS0042533' => 'camsi', 'DCAR_005960' => 'dca', 'DCAR_012104' => 'dca', 'DCAR_012105' => 'dca', 'DCAR_012293' => 'dca', 'DCAR_015632' => 'dca', 'DCAR_024602' => 'dca', 'DCAR_028752' => 'dca', 'Dinv06261' => 'din', 'Dinv13982' => 'din', 'Dinv17029' => 'din', 'Dinv18463' => 'din', 'Dinv33181' => 'din', 'Dinv35585' => 'din', 'Dinv37161' => 'din', 'Dinv42977' => 'din', 'Dinv43122' => 'din', 'Dinv44517' => 'din', 'Duzib093G0256' => 'dzi', 'Duzib106G1254' => 'dzi', 'Duzib128G1789' => 'dzi', 'Duzib133G0633' => 'dzi', 'Duzib138G0510' => 'dzi', 'Duzib150G1084' => 'dzi', 'Duzib168G0488' => 'dzi', 'Duzib168G1523' => 'dzi', 'Duzib170G0133' => 'dzi', 'ECA234G1433' => 'eca', 'ECA236G1432' => 'eca', 'ECA236G2256' => 'eca', 'ECA236G2365' => 'eca', 'ECA236G4830' => 'eca', 'ECA248G1505' => 'eca', 'EL10Ac3g06431' => 'bvu', 'EL10Ac5g12577' => 'bvu', 'EL10Ac6g13533' => 'bvu', 'EL10Ac7g16045' => 'bvu', 'Eucgr.A01281' => 'egr', 'Eucgr.B02326' => 'egr', 'Eucgr.H03532' => 'egr', 'Eucgr.K00553' => 'egr', 'Eucgr.K03116' => 'egr', 'FAN02G3963' => 'fan', 'FAN05G0438' => 'fan', 'FAN09G2434' => 'fan', 'FAN12G3984' => 'fan', 'FAN14G0798' => 'fan', 'FAN17G0652' => 'fan', 'FAN19G1988' => 'fan', 'FAN22G0632' => 'fan', 'FAN23G0387' => 'fan', 'FAN26G1323' => 'fan', 'FAN28G0666' => 'fan', 'FvH4_1g26080' => 'fve', 'FvH4_3g36780' => 'fve', 'FvH4_4g15270' => 'fve', 'FvH4_6g13490' => 'fve', 'Glyma.01G098700' => 'gma', 'Glyma.03G065900' => 'gma', 'Glyma.03G073754' => 'gma', 'Glyma.03G073758' => 'gma', 'Glyma.03G083200' => 'gma', 'Glyma.03G225500' => 'gma', 'Glyma.05G037766' => 'gma', 'Glyma.07G133500' => 'gma', 'Glyma.10G139400' => 'gma', 'Glyma.10G248900' => 'gma', 'Glyma.11G137800' => 'gma', 'Glyma.12G061300' => 'gma', 'Glyma.13G337900' => 'gma', 'Glyma.15G036600' => 'gma', 'Glyma.18G182800' => 'gma', 'Glyma.19G222500' => 'gma', 'Glyma.20G144800' => 'gma', 'Gohir.A01G222000' => 'ghi', 'Gohir.A03G044000' => 'ghi', 'Gohir.A03G044100' => 'ghi', 'Gohir.A04G083100' => 'ghi', 'Gohir.A07G127200' => 'ghi', 'Gohir.A07G132400' => 'ghi', 'Gohir.A08G000700' => 'ghi', 'Gohir.A11G327300' => 'ghi', 'Gohir.D01G211500' => 'ghi', 'Gohir.D03G123400' => 'ghi', 'Gohir.D03G123500' => 'ghi', 'Gohir.D04G121800' => 'ghi', 'Gohir.D07G131500' => 'ghi', 'Gohir.D07G136600' => 'ghi', 'Gohir.D08G011600' => 'ghi', 'Gohir.D11G346200' => 'ghi', 'Gorai.001G142800' => 'gra', 'Gorai.001G148700' => 'gra', 'Gorai.002G257300' => 'gra', 'Gorai.003G130000' => 'gra', 'Gorai.003G130100' => 'gra', 'Gorai.004G005300' => 'gra', 'Gorai.007G376500' => 'gra', 'Gorai.012G104700' => 'gra', 'GSVIVG01017946001' => 'vvi', 'GSVIVG01024928001' => 'vvi', 'GSVIVG01028227001' => 'vvi', 'GSVIVG01034151001' => 'vvi', 'HanXRQChr05g0135031' => 'han', 'HanXRQChr05g0135041' => 'han', 'HanXRQChr05g0140021' => 'han', 'HanXRQChr06g0178981' => 'han', 'HanXRQChr07g0188251' => 'han', 'HanXRQChr08g0235311' => 'han', 'HanXRQChr09g0271011' => 'han', 'HanXRQChr10g0293321' => 'han', 'HanXRQChr13g0388171' => 'han', 'Haze_00916' => 'cav', 'Haze_05063' => 'cav', 'Haze_20814' => 'cav', 'Haze_24128' => 'cav', 'Hma1.2p1_0745F.1_g212010' => 'hma', 'Hma1.2p1_0757F.1_g213260' => 'hma', 'Hma1.2p1_0936F.1_g238840' => 'hma', 'Hma1.2p1_1735F.1_g299890' => 'hma', 'Hma1.2p1_1861F.1_g305685' => 'hma', 'HPP92_003397' => 'vpl', 'HPP92_012597' => 'vpl', 'HPP92_015520' => 'vpl', 'HPP92_015539' => 'vpl', 'HPP92_020373' => 'vpl', 'Hund04938' => 'sun', 'Hund10677' => 'sun', 'Hund11033' => 'sun', 'Hund12155' => 'sun', 'Lalb_Chr01g0022551' => 'lal', 'Lalb_Chr03g0042341' => 'lal', 'Lalb_Chr07g0192931' => 'lal', 'Lalb_Chr12g0209551' => 'lal', 'Lalb_Chr19g0125251' => 'lal', 'Lalb_Chr19g0137891' => 'lal', 'Lalb_Chr21g0304641' => 'lal', 'Lalb_Chr21g0309881' => 'lal', 'Lj1A5T12' => 'lonja', 'Lj1C148G10' => 'lonja', 'Lj2A93T83' => 'lonja', 'Lj3A738G68' => 'lonja', 'Lj3C966T1' => 'lonja', 'Lj3g0018958' => 'lja', 'Lj3g0021831' => 'lja', 'Lj3g0025443' => 'lja', 'Lj4g0026809' => 'lja', 'Lj5g0012558' => 'lja', 'Lj5g0021586' => 'lja', 'Lsat_1_v5_gn_5_156840' => 'lsa', 'Lsat_1_v5_gn_8_73460' => 'lsa', 'Lsat_1_v5_gn_8_73481' => 'lsa', 'Lsat_1_v5_gn_9_31601' => 'lsa', 'Lsat_1_v5_gn_9_77320' => 'lsa', 'Manes.01G171300' => 'mes', 'Manes.01G171400' => 'mes', 'Manes.01G236100' => 'mes', 'Manes.02G130500' => 'mes', 'Manes.02G130600' => 'mes', 'Manes.03G180200' => 'mes', 'Manes.05G007000' => 'mes', 'Manes.08G084400' => 'mes', 'Manes.09G092600' => 'mes', 'Manes.15G027900' => 'mes', 'MBI04_g40948_MAGBIO' => 'mbi', 'MBI14_g12123_MAGBIO' => 'mbi', 'MBI18_g28915_MAGBIO' => 'mbi', 'MCO09G053' => 'mco', 'MCO11G782' => 'mco', 'MCO15G215' => 'mco', 'MD03G1088500' => 'mdo', 'MD03G1088600' => 'mdo', 'MD04G1130800' => 'mdo', 'MD09G1291700' => 'mdo', 'MD11G1097500' => 'mdo', 'MD11G1097600' => 'mdo', 'MD12G1143900' => 'mdo', 'MD13G1191400' => 'mdo', 'MD16G1191500' => 'mdo', 'Medtr1g085570' => 'mtr', 'Medtr1g104610' => 'mtr', 'Medtr2g097520' => 'mtr', 'Medtr4g021800' => 'mtr', 'Medtr4g021825' => 'mtr', 'Medtr4g064270' => 'mtr', 'Medtr4g064380' => 'mtr', 'Medtr7g062150' => 'mtr', 'MELO3C003138.2' => 'cme', 'MELO3C005187.2' => 'cme', 'MELO3C009252.2' => 'cme', 'MELO3C014481.2' => 'cme', 'MELO3C020616.2' => 'cme', 'MELO3C020617.2' => 'cme', 'MELO3C020618.2' => 'cme', 'Migut.G00328' => 'egut', 'Migut.J00320' => 'egut', 'Migut.L01000' => 'egut', 'Migut.L01953' => 'egut', 'MSTRG.10253' => 'ama', 'MSTRG.19077' => 'ama', 'MSTRG.26780' => 'ama', 'MSTRG.4023' => 'ama', 'MSTRG.5655' => 'ama', 'MSTRG.9992' => 'ama', 'Nitab4.5_0000043g0310' => 'nta', 'Nitab4.5_0000463g0080' => 'nta', 'Nitab4.5_0000705g0170' => 'nta', 'Nitab4.5_0001326g0060' => 'nta', 'Nitab4.5_0001628g0030' => 'nta', 'Nitab4.5_0002103g0110' => 'nta', 'Nitab4.5_0002946g0030' => 'nta', 'Nitab4.5_0004639g0030' => 'nta', 'Nn2g11149' => 'nnu', 'Nn2g13389' => 'nnu', 'Nn4g25326' => 'nnu', 'Nn4g26290' => 'nnu', 'Nn5g29865' => 'nnu', 'Oeu004163.1' => 'oeu', 'Oeu006901.1' => 'oeu', 'Oeu010096.1' => 'oeu', 'Oeu024340.1' => 'oeu', 'Oeu048369.1' => 'oeu', 'Os01g0973000' => 'osa', 'Os03g0273800' => 'osa', 'Os03g0701200' => 'osa', 'Os03g0834050' => 'osa', 'Os07g0634400' => 'osa', 'Peaxi162Scf00092g01414' => 'pax', 'Peaxi162Scf00165g00818' => 'pax', 'Peaxi162Scf00309g00516' => 'pax', 'Peaxi162Scf00774g00218' => 'pax', 'PGR004G1824' => 'pgr', 'PGR004G2606' => 'pgr', 'PGR031G2716' => 'pgr', 'PGR102G2460' => 'pgr', 'PGR142G2599' => 'pgr', 'PGSC0003DMG400000843' => 'stu', 'PGSC0003DMG400008829' => 'stu', 'PGSC0003DMG400030418' => 'stu', 'PGSC0003DMG400031834' => 'stu', 'PGSC0003DMG401028300' => 'stu', 'PGSC0003DMG402028300' => 'stu', 'Phvul.001G219300' => 'pvu', 'Phvul.007G056000' => 'pvu', 'Phvul.007G208000' => 'pvu', 'Phvul.008G119500' => 'pvu', 'Phvul.010G011200' => 'pvu', 'Phvul.010G014800' => 'pvu', 'Phvul.011G062900' => 'pvu', 'Phvul.L007043' => 'pvu', 'Potri.001G242300' => 'ptr', 'Potri.002G185300' => 'ptr', 'Potri.006G086900' => 'ptr', 'Potri.008G151700' => 'ptr', 'Potri.009G033500' => 'ptr', 'Potri.010G089300' => 'ptr', 'Potri.014G110800' => 'ptr', 'Pp3c27_8130' => 'ppa', 'Pp3c6_27410' => 'ppa', 'PRCOL_00001659' => 'pco', 'PRCOL_00001927' => 'pco', 'PRCOL_00003649' => 'pco', 'Prupe.1G011600' => 'ppe', 'Prupe.3G000800' => 'ppe', 'Prupe.3G001100' => 'ppe', 'Prupe.6G072700' => 'ppe', 'Prupe.6G072800' => 'ppe', 'Prupe.6G257300' => 'ppe', 'Prupe.8G033000' => 'ppe', 'Psat0s2633g0080' => 'psa', 'Psat0s3396g0080' => 'psa', 'Psat0s3396g0200' => 'psa', 'Psat3g139080' => 'psa', 'Psat5g285080' => 'psa', 'Psat6g157760' => 'psa', 'Psat6g208440' => 'psa', 'Psat7g215320' => 'psa', 'Psat7g215400' => 'psa', 'Psat7g235600' => 'psa', 'Psat7g235760' => 'psa', 'PSO063G4603' => 'pso', 'PSO210G0182' => 'pso', 'PSO210G0196' => 'pso', 'PSO339G0394' => 'pso', 'PSO339G4127' => 'pso', 'PSO513G0064' => 'pso', 'PSO761G0079' => 'pso', 'QL01p031003' => 'qlo', 'QL01p031078' => 'qlo', 'QL06p003004' => 'qlo', 'QL07p048731' => 'qlo', 'QL09p037427' => 'qlo', 'RcHm_v2.0_Chr3g0466361' => 'rch', 'RcHm_v2.0_Chr3g0485571' => 'rch', 'RcHm_v2.0_Chr4g0416551' => 'rch', 'RcHm_v2.0_Chr5g0065831' => 'rch', 'Rhsim01G0230500' => 'rsi', 'Rhsim05G0194000' => 'rsi', 'Rhsim08G0250400' => 'rsi', 'Sabra02G0131000' => 'sbr', 'Sabra06G0066300' => 'sbr', 'Sabra08G0115500' => 'sbr', 'Sabra09G0023900' => 'sbr', 'Sabra10G0054000' => 'sbr', 'Sabra14G0081500' => 'sbr', 'Sabra16G0147100' => 'sbr', 'SalBow2G2957' => 'sbo', 'SalBow4G3320' => 'sbo', 'SalBow8G1894' => 'sbo', 'Sc07g0007950' => 'sci', 'Sc12g0001360' => 'sci', 'Sc13g0004330' => 'sci', 'Sc20g0005010' => 'sci', 'Sed0000361' => 'sed', 'Sed0001706' => 'sed', 'Sed0002422' => 'sed', 'Sed0004029' => 'sed', 'Sed0004602' => 'sed', 'Sed0004943' => 'sed', 'Sed0008646' => 'sed', 'Sed0023313' => 'sed', 'Sed0024843' => 'sed', 'SEGI_00081' => 'sgi', 'SEGI_00947' => 'sgi', 'SEGI_04046' => 'sgi', 'SEGI_06880' => 'sgi', 'SEGI_09736' => 'sgi', 'SEGI_12741' => 'sgi', 'SEGI_14530' => 'sgi', 'SEGI_20705' => 'sgi', 'SEGI_26088' => 'sgi', 'SEGI_28323' => 'sgi', 'SEGI_33343' => 'sgi', 'SGA_v2.0_scaffold126G33775' => 'sas', 'SGA_v2.0_scaffold2G01337' => 'sas', 'SGA_v2.0_scaffold38G15006' => 'sas', 'SGA_v2.0_scaffold39G15264' => 'sas', 'SGA_v2.0_scaffold453G51880' => 'sas', 'SHI12696' => 'shi', 'SMO367G1096' => 'smo', 'Solyc01g068630.3' => 'sly', 'Solyc05g011880.3' => 'sly', 'Solyc06g076300.3' => 'sly', 'Solyc09g010940.4' => 'sly', 'Solyc09g075890.3' => 'sly', 'Sopen01g030560' => 'spe', 'Sopen05g006630' => 'spe', 'Sopen06g032720' => 'spe', 'Sopen09g005660' => 'spe', 'Sopen09g030690' => 'spe', 'Sp4g14540' => 'spa', 'Sp4g20030' => 'spa', 'Sp5g01320' => 'spa', 'Sp6g21170' => 'spa', 'Sp6g21180' => 'spa', 'Sp6g21190' => 'spa', 'Sp6g40220' => 'spa', 'TAR362G0122' => 'tar', 'TAR362G1338' => 'tar', 'TAR369G0590' => 'tar', 'TAR371G0824' => 'tar', 'TAR622G1429' => 'tar', 'TAR623G0734' => 'tar', 'TAR625G0441' => 'tar', 'TAR629G0976' => 'tar', 'TAR633G1195' => 'tar', 'TAR636G2660' => 'tar', 'THA.LOC104799440' => 'tha', 'THA.LOC104800966' => 'tha', 'THA.LOC104806559' => 'tha', 'THA.LOC104810765' => 'tha', 'THA.LOC104816266' => 'tha', 'THA.LOC104817419' => 'tha', 'THA.LOC104827021' => 'tha', 'Thecc.01G327400' => 'tca', 'Thecc.04G229200' => 'tca', 'Thecc.05G037400' => 'tca', 'Thecc.09G318600' => 'tca', 'Thecc.09G318700' => 'tca', 'Thhalv10006238m.g' => 'esa', 'Thhalv10014321m.g' => 'esa', 'Thhalv10014335m.g' => 'esa', 'Thhalv10015826m.g' => 'esa', 'Thhalv10017107m.g' => 'esa', 'Thhalv10017180m.g' => 'esa', 'Thhalv10029339m.g' => 'esa', 'TPR.G1699' => 'tpr', 'TPR.G23609' => 'tpr', 'TPR.G3081' => 'tpr', 'TPR.G40397' => 'tpr', 'TPR.G5522' => 'tpr', 'TPR.G5618' => 'tpr', 'TPR.G5626' => 'tpr', 'TWI09G1632' => 'twi', 'TWI23G1230' => 'twi', 'TWI53G1064' => 'twi', 'TWI59G0751' => 'twi', 'TWI74G0947' => 'twi', 'TWI77G0337' => 'twi', 'TWI79G1254' => 'twi', 'unitig_0.g2341' => 'ugi', 'unitig_26.g10006' => 'ugi', 'unitig_26.g10008' => 'ugi', 'unitig_26.g9192' => 'ugi', 'vmacro14547' => 'vma', 'vmacro15333' => 'vma', 'vmacro18743' => 'vma', 'vmacro20166' => 'vma', 'VMungo0331G0523' => 'vmu', 'VMungo0331G1202' => 'vmu', 'VMungo0720G1228' => 'vmu', 'VMungo0720G1514' => 'vmu', 'VMungo1080G0169' => 'vmu', 'VMungo1127G1475' => 'vmu', 'VMungo1383G1208' => 'vmu', 'VMungo1383G1698' => 'vmu', 'Zm00001eb012270' => 'zma', 'Zm00001eb054100' => 'zma', 'Zm00001eb063350' => 'zma', 'Zm00001eb328560' => 'zma', 'Zm00001eb342820' => 'zma', 'Zm00001eb362210' => 'zma', 'Zm00001eb397730' => 'zma', 'Zm00001eb399750' => 'zma' ), 'gf_id' => 'HOM05D000959', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000959' ), 'data_identifier' => 'HOM05D000959', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000959', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '622', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p07100' => 'bna', 'A03p11720' => 'bna', 'A05p08300' => 'bna', 'A05p13380' => 'bna', 'A09p54130' => 'bna', 'A10p16690' => 'bna', 'A10p16700' => 'bna', 'A10p33390' => 'bna', 'Aa31LG10G16020' => 'aar', 'Aa31LG1G11810' => 'aar', 'Aa31LG1G11830' => 'aar', 'Aa31LG1G22510' => 'aar', 'Aa31LG5G4890' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5793' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2310' => 'aag', 'Actinidia08499' => 'ach', 'Actinidia11262' => 'ach', 'Actinidia23926' => 'ach', 'Actinidia34420' => 'ach', 'Actinidia36970' => 'ach', 'Ah.02g111220' => 'amhyb', 'Ah.15g097750' => 'amhyb', 'AL4G27500' => 'aly', 'AL6G11470' => 'aly', 'AL8G35950' => 'aly', 'AL8G35960' => 'aly', 'AL8G35970' => 'aly', 'Aqoxy1G00912' => 'aox', 'Aqoxy2G02253' => 'aox', 'Aqoxy2G02411' => 'aox', 'Aqoxy5G00485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BZ66YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K8ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM4FUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6BF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HFV7XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25JBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0YNNV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MAKK6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P70IT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP2Z6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V61LZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YWP64R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3S9AI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7PGHH' => 'arhy', 'AT2G32150' => 'ath', 'AT3G62040' => 'ath', 'AT5G02230' => 'ath', 'AT5G59480' => 'ath', 'AT5G59490' => 'ath', 'ATR0332G060' => 'atr', 'ATR0559G190' => 'atr', 'ATR0693G294' => 'atr', 'Atru.chr3.3975' => 'acertr', 'Atru.chr3.3976' => 'acertr', 'Atru.chr3.3977' => 'acertr', 'Atru.chr4.2498' => 'acertr', 'Atru.chr5.838' => 'acertr', 'Atru.chr8.1990' => 'acertr', 'Atru.chr8.1991' => 'acertr', 'Atru.chr8.1992' => 'acertr', 'AUR62001759' => 'cqu', 'AUR62009545' => 'cqu', 'AUR62010474' => 'cqu', 'AUR62025820' => 'cqu', 'AUR62030422' => 'cqu', 'AUR62033605' => 'cqu', 'AUR62038615' => 'cqu', 'AUR62041347' => 'cqu', 'BcaB01g04574' => 'bca', 'BcaB02g09263' => 'bca', 'BcaB02g10453' => 'bca', 'BcaB05g22513' => 'bca', 'BcaB08g36253' => 'bca', 'BcaB08g36254' => 'bca', 'BcaC01g06519' => 'bca', 'BcaC02g11889' => 'bca', 'BcaC03g14010' => 'bca', 'BcaC03g18439' => 'bca', 'BcaC04g19765' => 'bca', 'BcaC09g48432' => 'bca', 'BcaNung07302' => 'bca', 'BolC2t06040H' => 'bol', 'BolC2t07346H' => 'bol', 'BolC3t13817H' => 'bol', 'BolC4t22625H' => 'bol', 'BolC4t23297H' => 'bol', 'BolC8t51278H' => 'bol', 'BolC9t58050H' => 'bol', 'BolC9t58051H' => 'bol', 'BolC9t60163H' => 'bol', 'BraA02t04712Z' => 'bra', 'BraA02t05791Z' => 'bra', 'BraA03t10483Z' => 'bra', 'BraA05t19795Z' => 'bra', 'BraA05t20276Z' => 'bra', 'BraA09t40827Z' => 'bra', 'BraA10t43750Z' => 'bra', 'BraA10t43751Z' => 'bra', 'BraA10t45370Z' => 'bra', 'C02p00400' => 'bna', 'C02p12460' => 'bna', 'C03p13680' => 'bna', 'C04p10270' => 'bna', 'C04p17500' => 'bna', 'C08p37010' => 'bna', 'C09p51880' => 'bna', 'C09p51890' => 'bna', 'C09p74300' => 'bna', 'CAN.G179.26' => 'can', 'CAN.G3384.1' => 'can', 'CAN.G394.68' => 'can', 'CAN.G907.13' => 'can', 'CANSAT11G0012' => 'cansat', 'CANSAT25G1586' => 'cansat', 'CANSAT35G0735' => 'cansat', 'CANSAT54G0556' => 'cansat', 'CANSAT64G0356' => 'cansat', 'CANSAT78G2042' => 'cansat', 'CARHR125920' => 'chi', 'CARHR131910' => 'chi', 'CARHR172390' => 'chi', 'CARHR211140' => 'chi', 'CARHR285850' => 'chi', 'CARHR285860' => 'chi', 'Carub.0004s1347' => 'cru', 'Carub.0004s1960' => 'cru', 'Carub.0005s2880' => 'cru', 'Carub.0006s0107' => 'cru', 'Carub.0008s2015' => 'cru', 'Carub.0008s2016' => 'cru', 'Carub.0008s2017' => 'cru', 'Ca_01315_v3' => 'car', 'Ca_05063_v3' => 'car', 'Ca_10231_v3' => 'car', 'Ca_10913_v3' => 'car', 'Ca_19156_v3' => 'car', 'Ca_23644_v3' => 'car', 'Ca_26735_v3' => 'car', 'Cc01_g13130' => 'ccan', 'Cc02_g21690' => 'ccan', 'Cc03_g03600' => 'ccan', 'Cc06_g02510' => 'ccan', 'CDE02G1265' => 'cde', 'CDE05G0415' => 'cde', 'CDE08G1082' => 'cde', 'Cfa005780' => 'cfa', 'Cfa011522' => 'cfa', 'Cfa011523' => 'cfa', 'Cfa015627' => 'cfa', 'Cfa017359' => 'cfa', 'Ciclev10005687m.g' => 'ccl', 'Ciclev10012173m.g' => 'ccl', 'Ciclev10021621m.g' => 'ccl', 'Ciclev10028968m.g' => 'ccl', 'Ciclev10029907m.g' => 'ccl', 'CiPaw.01G164800' => 'cil', 'CiPaw.07G083700' => 'cil', 'CiPaw.07G127000' => 'cil', 'CiPaw.07G136900' => 'cil', 'CiPaw.08G081700' => 'cil', 'CiPaw.09G194600' => 'cil', 'CiPaw.10G146500' => 'cil', 'CiPaw.13G091500' => 'cil', 'CiPaw.13G091600' => 'cil', 'ClCG00G003390' => 'cla', 'ClCG01G007220' => 'cla', 'ClCG03G001370' => 'cla', 'ClCG04G008100' => 'cla', 'ClCG06G006110' => 'cla', 'ClCG06G006130' => 'cla', 'ClCG10G021210' => 'cla', 'COL.COLO4_07648' => 'col', 'COL.COLO4_07650' => 'col', 'COL.COLO4_07651' => 'col', 'COL.COLO4_14780' => 'col', 'COL.COLO4_18546' => 'col', 'COL.COLO4_18547' => 'col', 'COL.COLO4_23103' => 'col', 'COL.COLO4_30419' => 'col', 'COL.COLO4_34232' => 'col', 'Cpa.g.sc169.20' => 'cpa', 'Cpa.g.sc57.45' => 'cpa', 'Cpa.g.sc58.124' => 'cpa', 'Cpa.g.sc58.125' => 'cpa', 'Cpa.g.sc81.118' => 'cpa', 'Cpa.g.sc81.119' => 'cpa', 'Cre12.g524700' => 'cre', 'CsaV3_1G034430' => 'csa', 'CsaV3_1G034440' => 'csa', 'CsaV3_1G034450' => 'csa', 'CsaV3_3G034830' => 'csa', 'CsaV3_4G025090' => 'csa', 'CsaV3_5G018660' => 'csa', 'CsaV3_6G038160' => 'csa', 'CSS0003447' => 'camsi', 'CSS0017840' => 'camsi', 'CSS0019260' => 'camsi', 'CSS0040375' => 'camsi', 'CSS0042533' => 'camsi', 'DCAR_005960' => 'dca', 'DCAR_012104' => 'dca', 'DCAR_012105' => 'dca', 'DCAR_012293' => 'dca', 'DCAR_015632' => 'dca', 'DCAR_024602' => 'dca', 'DCAR_028752' => 'dca', 'Dinv06261' => 'din', 'Dinv13982' => 'din', 'Dinv17029' => 'din', 'Dinv18463' => 'din', 'Dinv33181' => 'din', 'Dinv35585' => 'din', 'Dinv37161' => 'din', 'Dinv42977' => 'din', 'Dinv43122' => 'din', 'Dinv44517' => 'din', 'Duzib093G0256' => 'dzi', 'Duzib106G1254' => 'dzi', 'Duzib128G1789' => 'dzi', 'Duzib133G0633' => 'dzi', 'Duzib138G0510' => 'dzi', 'Duzib150G1084' => 'dzi', 'Duzib168G0488' => 'dzi', 'Duzib168G1523' => 'dzi', 'Duzib170G0133' => 'dzi', 'ECA234G1433' => 'eca', 'ECA236G1432' => 'eca', 'ECA236G2256' => 'eca', 'ECA236G2365' => 'eca', 'ECA236G4830' => 'eca', 'ECA248G1505' => 'eca', 'EL10Ac3g06431' => 'bvu', 'EL10Ac5g12577' => 'bvu', 'EL10Ac6g13533' => 'bvu', 'EL10Ac7g16045' => 'bvu', 'Eucgr.A01281' => 'egr', 'Eucgr.B02326' => 'egr', 'Eucgr.H03532' => 'egr', 'Eucgr.K00553' => 'egr', 'Eucgr.K03116' => 'egr', 'FAN02G3963' => 'fan', 'FAN05G0438' => 'fan', 'FAN09G2434' => 'fan', 'FAN12G3984' => 'fan', 'FAN14G0798' => 'fan', 'FAN17G0652' => 'fan', 'FAN19G1988' => 'fan', 'FAN22G0632' => 'fan', 'FAN23G0387' => 'fan', 'FAN26G1323' => 'fan', 'FAN28G0666' => 'fan', 'FvH4_1g26080' => 'fve', 'FvH4_3g36780' => 'fve', 'FvH4_4g15270' => 'fve', 'FvH4_6g13490' => 'fve', 'Glyma.01G098700' => 'gma', 'Glyma.03G065900' => 'gma', 'Glyma.03G073754' => 'gma', 'Glyma.03G073758' => 'gma', 'Glyma.03G083200' => 'gma', 'Glyma.03G225500' => 'gma', 'Glyma.05G037766' => 'gma', 'Glyma.07G133500' => 'gma', 'Glyma.10G139400' => 'gma', 'Glyma.10G248900' => 'gma', 'Glyma.11G137800' => 'gma', 'Glyma.12G061300' => 'gma', 'Glyma.13G337900' => 'gma', 'Glyma.15G036600' => 'gma', 'Glyma.18G182800' => 'gma', 'Glyma.19G222500' => 'gma', 'Glyma.20G144800' => 'gma', 'Gohir.A01G222000' => 'ghi', 'Gohir.A03G044000' => 'ghi', 'Gohir.A03G044100' => 'ghi', 'Gohir.A04G083100' => 'ghi', 'Gohir.A07G127200' => 'ghi', 'Gohir.A07G132400' => 'ghi', 'Gohir.A08G000700' => 'ghi', 'Gohir.A11G327300' => 'ghi', 'Gohir.D01G211500' => 'ghi', 'Gohir.D03G123400' => 'ghi', 'Gohir.D03G123500' => 'ghi', 'Gohir.D04G121800' => 'ghi', 'Gohir.D07G131500' => 'ghi', 'Gohir.D07G136600' => 'ghi', 'Gohir.D08G011600' => 'ghi', 'Gohir.D11G346200' => 'ghi', 'Gorai.001G142800' => 'gra', 'Gorai.001G148700' => 'gra', 'Gorai.002G257300' => 'gra', 'Gorai.003G130000' => 'gra', 'Gorai.003G130100' => 'gra', 'Gorai.004G005300' => 'gra', 'Gorai.007G376500' => 'gra', 'Gorai.012G104700' => 'gra', 'GSVIVG01017946001' => 'vvi', 'GSVIVG01024928001' => 'vvi', 'GSVIVG01028227001' => 'vvi', 'GSVIVG01034151001' => 'vvi', 'HanXRQChr05g0135031' => 'han', 'HanXRQChr05g0135041' => 'han', 'HanXRQChr05g0140021' => 'han', 'HanXRQChr06g0178981' => 'han', 'HanXRQChr07g0188251' => 'han', 'HanXRQChr08g0235311' => 'han', 'HanXRQChr09g0271011' => 'han', 'HanXRQChr10g0293321' => 'han', 'HanXRQChr13g0388171' => 'han', 'Haze_00916' => 'cav', 'Haze_05063' => 'cav', 'Haze_20814' => 'cav', 'Haze_24128' => 'cav', 'Hma1.2p1_0745F.1_g212010' => 'hma', 'Hma1.2p1_0757F.1_g213260' => 'hma', 'Hma1.2p1_0936F.1_g238840' => 'hma', 'Hma1.2p1_1735F.1_g299890' => 'hma', 'Hma1.2p1_1861F.1_g305685' => 'hma', 'HPP92_003397' => 'vpl', 'HPP92_012597' => 'vpl', 'HPP92_015520' => 'vpl', 'HPP92_015539' => 'vpl', 'HPP92_020373' => 'vpl', 'Hund04938' => 'sun', 'Hund10677' => 'sun', 'Hund11033' => 'sun', 'Hund12155' => 'sun', 'Lalb_Chr01g0022551' => 'lal', 'Lalb_Chr03g0042341' => 'lal', 'Lalb_Chr07g0192931' => 'lal', 'Lalb_Chr12g0209551' => 'lal', 'Lalb_Chr19g0125251' => 'lal', 'Lalb_Chr19g0137891' => 'lal', 'Lalb_Chr21g0304641' => 'lal', 'Lalb_Chr21g0309881' => 'lal', 'Lj1A5T12' => 'lonja', 'Lj1C148G10' => 'lonja', 'Lj2A93T83' => 'lonja', 'Lj3A738G68' => 'lonja', 'Lj3C966T1' => 'lonja', 'Lj3g0018958' => 'lja', 'Lj3g0021831' => 'lja', 'Lj3g0025443' => 'lja', 'Lj4g0026809' => 'lja', 'Lj5g0012558' => 'lja', 'Lj5g0021586' => 'lja', 'Lsat_1_v5_gn_5_156840' => 'lsa', 'Lsat_1_v5_gn_8_73460' => 'lsa', 'Lsat_1_v5_gn_8_73481' => 'lsa', 'Lsat_1_v5_gn_9_31601' => 'lsa', 'Lsat_1_v5_gn_9_77320' => 'lsa', 'Manes.01G171300' => 'mes', 'Manes.01G171400' => 'mes', 'Manes.01G236100' => 'mes', 'Manes.02G130500' => 'mes', 'Manes.02G130600' => 'mes', 'Manes.03G180200' => 'mes', 'Manes.05G007000' => 'mes', 'Manes.08G084400' => 'mes', 'Manes.09G092600' => 'mes', 'Manes.15G027900' => 'mes', 'MBI04_g40948_MAGBIO' => 'mbi', 'MBI14_g12123_MAGBIO' => 'mbi', 'MBI18_g28915_MAGBIO' => 'mbi', 'MCO09G053' => 'mco', 'MCO11G782' => 'mco', 'MCO15G215' => 'mco', 'MD03G1088500' => 'mdo', 'MD03G1088600' => 'mdo', 'MD04G1130800' => 'mdo', 'MD09G1291700' => 'mdo', 'MD11G1097500' => 'mdo', 'MD11G1097600' => 'mdo', 'MD12G1143900' => 'mdo', 'MD13G1191400' => 'mdo', 'MD16G1191500' => 'mdo', 'Medtr1g085570' => 'mtr', 'Medtr1g104610' => 'mtr', 'Medtr2g097520' => 'mtr', 'Medtr4g021800' => 'mtr', 'Medtr4g021825' => 'mtr', 'Medtr4g064270' => 'mtr', 'Medtr4g064380' => 'mtr', 'Medtr7g062150' => 'mtr', 'MELO3C003138.2' => 'cme', 'MELO3C005187.2' => 'cme', 'MELO3C009252.2' => 'cme', 'MELO3C014481.2' => 'cme', 'MELO3C020616.2' => 'cme', 'MELO3C020617.2' => 'cme', 'MELO3C020618.2' => 'cme', 'Migut.G00328' => 'egut', 'Migut.J00320' => 'egut', 'Migut.L01000' => 'egut', 'Migut.L01953' => 'egut', 'MSTRG.10253' => 'ama', 'MSTRG.19077' => 'ama', 'MSTRG.26780' => 'ama', 'MSTRG.4023' => 'ama', 'MSTRG.5655' => 'ama', 'MSTRG.9992' => 'ama', 'Nitab4.5_0000043g0310' => 'nta', 'Nitab4.5_0000463g0080' => 'nta', 'Nitab4.5_0000705g0170' => 'nta', 'Nitab4.5_0001326g0060' => 'nta', 'Nitab4.5_0001628g0030' => 'nta', 'Nitab4.5_0002103g0110' => 'nta', 'Nitab4.5_0002946g0030' => 'nta', 'Nitab4.5_0004639g0030' => 'nta', 'Nn2g11149' => 'nnu', 'Nn2g13389' => 'nnu', 'Nn4g25326' => 'nnu', 'Nn4g26290' => 'nnu', 'Nn5g29865' => 'nnu', 'Oeu004163.1' => 'oeu', 'Oeu006901.1' => 'oeu', 'Oeu010096.1' => 'oeu', 'Oeu024340.1' => 'oeu', 'Oeu048369.1' => 'oeu', 'Os01g0973000' => 'osa', 'Os03g0273800' => 'osa', 'Os03g0701200' => 'osa', 'Os03g0834050' => 'osa', 'Os07g0634400' => 'osa', 'Peaxi162Scf00092g01414' => 'pax', 'Peaxi162Scf00165g00818' => 'pax', 'Peaxi162Scf00309g00516' => 'pax', 'Peaxi162Scf00774g00218' => 'pax', 'PGR004G1824' => 'pgr', 'PGR004G2606' => 'pgr', 'PGR031G2716' => 'pgr', 'PGR102G2460' => 'pgr', 'PGR142G2599' => 'pgr', 'PGSC0003DMG400000843' => 'stu', 'PGSC0003DMG400008829' => 'stu', 'PGSC0003DMG400030418' => 'stu', 'PGSC0003DMG400031834' => 'stu', 'PGSC0003DMG401028300' => 'stu', 'PGSC0003DMG402028300' => 'stu', 'Phvul.001G219300' => 'pvu', 'Phvul.007G056000' => 'pvu', 'Phvul.007G208000' => 'pvu', 'Phvul.008G119500' => 'pvu', 'Phvul.010G011200' => 'pvu', 'Phvul.010G014800' => 'pvu', 'Phvul.011G062900' => 'pvu', 'Phvul.L007043' => 'pvu', 'Potri.001G242300' => 'ptr', 'Potri.002G185300' => 'ptr', 'Potri.006G086900' => 'ptr', 'Potri.008G151700' => 'ptr', 'Potri.009G033500' => 'ptr', 'Potri.010G089300' => 'ptr', 'Potri.014G110800' => 'ptr', 'Pp3c27_8130' => 'ppa', 'Pp3c6_27410' => 'ppa', 'PRCOL_00001659' => 'pco', 'PRCOL_00001927' => 'pco', 'PRCOL_00003649' => 'pco', 'Prupe.1G011600' => 'ppe', 'Prupe.3G000800' => 'ppe', 'Prupe.3G001100' => 'ppe', 'Prupe.6G072700' => 'ppe', 'Prupe.6G072800' => 'ppe', 'Prupe.6G257300' => 'ppe', 'Prupe.8G033000' => 'ppe', 'Psat0s2633g0080' => 'psa', 'Psat0s3396g0080' => 'psa', 'Psat0s3396g0200' => 'psa', 'Psat3g139080' => 'psa', 'Psat5g285080' => 'psa', 'Psat6g157760' => 'psa', 'Psat6g208440' => 'psa', 'Psat7g215320' => 'psa', 'Psat7g215400' => 'psa', 'Psat7g235600' => 'psa', 'Psat7g235760' => 'psa', 'PSO063G4603' => 'pso', 'PSO210G0182' => 'pso', 'PSO210G0196' => 'pso', 'PSO339G0394' => 'pso', 'PSO339G4127' => 'pso', 'PSO513G0064' => 'pso', 'PSO761G0079' => 'pso', 'QL01p031003' => 'qlo', 'QL01p031078' => 'qlo', 'QL06p003004' => 'qlo', 'QL07p048731' => 'qlo', 'QL09p037427' => 'qlo', 'RcHm_v2.0_Chr3g0466361' => 'rch', 'RcHm_v2.0_Chr3g0485571' => 'rch', 'RcHm_v2.0_Chr4g0416551' => 'rch', 'RcHm_v2.0_Chr5g0065831' => 'rch', 'Rhsim01G0230500' => 'rsi', 'Rhsim05G0194000' => 'rsi', 'Rhsim08G0250400' => 'rsi', 'Sabra02G0131000' => 'sbr', 'Sabra06G0066300' => 'sbr', 'Sabra08G0115500' => 'sbr', 'Sabra09G0023900' => 'sbr', 'Sabra10G0054000' => 'sbr', 'Sabra14G0081500' => 'sbr', 'Sabra16G0147100' => 'sbr', 'SalBow2G2957' => 'sbo', 'SalBow4G3320' => 'sbo', 'SalBow8G1894' => 'sbo', 'Sc07g0007950' => 'sci', 'Sc12g0001360' => 'sci', 'Sc13g0004330' => 'sci', 'Sc20g0005010' => 'sci', 'Sed0000361' => 'sed', 'Sed0001706' => 'sed', 'Sed0002422' => 'sed', 'Sed0004029' => 'sed', 'Sed0004602' => 'sed', 'Sed0004943' => 'sed', 'Sed0008646' => 'sed', 'Sed0023313' => 'sed', 'Sed0024843' => 'sed', 'SEGI_00081' => 'sgi', 'SEGI_00947' => 'sgi', 'SEGI_04046' => 'sgi', 'SEGI_06880' => 'sgi', 'SEGI_09736' => 'sgi', 'SEGI_12741' => 'sgi', 'SEGI_14530' => 'sgi', 'SEGI_20705' => 'sgi', 'SEGI_26088' => 'sgi', 'SEGI_28323' => 'sgi', 'SEGI_33343' => 'sgi', 'SGA_v2.0_scaffold126G33775' => 'sas', 'SGA_v2.0_scaffold2G01337' => 'sas', 'SGA_v2.0_scaffold38G15006' => 'sas', 'SGA_v2.0_scaffold39G15264' => 'sas', 'SGA_v2.0_scaffold453G51880' => 'sas', 'SHI12696' => 'shi', 'SMO367G1096' => 'smo', 'Solyc01g068630.3' => 'sly', 'Solyc05g011880.3' => 'sly', 'Solyc06g076300.3' => 'sly', 'Solyc09g010940.4' => 'sly', 'Solyc09g075890.3' => 'sly', 'Sopen01g030560' => 'spe', 'Sopen05g006630' => 'spe', 'Sopen06g032720' => 'spe', 'Sopen09g005660' => 'spe', 'Sopen09g030690' => 'spe', 'Sp4g14540' => 'spa', 'Sp4g20030' => 'spa', 'Sp5g01320' => 'spa', 'Sp6g21170' => 'spa', 'Sp6g21180' => 'spa', 'Sp6g21190' => 'spa', 'Sp6g40220' => 'spa', 'TAR362G0122' => 'tar', 'TAR362G1338' => 'tar', 'TAR369G0590' => 'tar', 'TAR371G0824' => 'tar', 'TAR622G1429' => 'tar', 'TAR623G0734' => 'tar', 'TAR625G0441' => 'tar', 'TAR629G0976' => 'tar', 'TAR633G1195' => 'tar', 'TAR636G2660' => 'tar', 'THA.LOC104799440' => 'tha', 'THA.LOC104800966' => 'tha', 'THA.LOC104806559' => 'tha', 'THA.LOC104810765' => 'tha', 'THA.LOC104816266' => 'tha', 'THA.LOC104817419' => 'tha', 'THA.LOC104827021' => 'tha', 'Thecc.01G327400' => 'tca', 'Thecc.04G229200' => 'tca', 'Thecc.05G037400' => 'tca', 'Thecc.09G318600' => 'tca', 'Thecc.09G318700' => 'tca', 'Thhalv10006238m.g' => 'esa', 'Thhalv10014321m.g' => 'esa', 'Thhalv10014335m.g' => 'esa', 'Thhalv10015826m.g' => 'esa', 'Thhalv10017107m.g' => 'esa', 'Thhalv10017180m.g' => 'esa', 'Thhalv10029339m.g' => 'esa', 'TPR.G1699' => 'tpr', 'TPR.G23609' => 'tpr', 'TPR.G3081' => 'tpr', 'TPR.G40397' => 'tpr', 'TPR.G5522' => 'tpr', 'TPR.G5618' => 'tpr', 'TPR.G5626' => 'tpr', 'TWI09G1632' => 'twi', 'TWI23G1230' => 'twi', 'TWI53G1064' => 'twi', 'TWI59G0751' => 'twi', 'TWI74G0947' => 'twi', 'TWI77G0337' => 'twi', 'TWI79G1254' => 'twi', 'unitig_0.g2341' => 'ugi', 'unitig_26.g10006' => 'ugi', 'unitig_26.g10008' => 'ugi', 'unitig_26.g9192' => 'ugi', 'vmacro14547' => 'vma', 'vmacro15333' => 'vma', 'vmacro18743' => 'vma', 'vmacro20166' => 'vma', 'VMungo0331G0523' => 'vmu', 'VMungo0331G1202' => 'vmu', 'VMungo0720G1228' => 'vmu', 'VMungo0720G1514' => 'vmu', 'VMungo1080G0169' => 'vmu', 'VMungo1127G1475' => 'vmu', 'VMungo1383G1208' => 'vmu', 'VMungo1383G1698' => 'vmu', 'Zm00001eb012270' => 'zma', 'Zm00001eb054100' => 'zma', 'Zm00001eb063350' => 'zma', 'Zm00001eb328560' => 'zma', 'Zm00001eb342820' => 'zma', 'Zm00001eb362210' => 'zma', 'Zm00001eb397730' => 'zma', 'Zm00001eb399750' => 'zma' ) $gf_id = 'HOM05D000959' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000959' ) $data_identifier = 'HOM05D000959' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 5, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 5, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 10, 'mbi' => (int) 3, 'mco' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 2, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 3, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 11, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399750' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000959', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '622', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p07100' => 'bna', 'A03p11720' => 'bna', 'A05p08300' => 'bna', 'A05p13380' => 'bna', 'A09p54130' => 'bna', 'A10p16690' => 'bna', 'A10p16700' => 'bna', 'A10p33390' => 'bna', 'Aa31LG10G16020' => 'aar', 'Aa31LG1G11810' => 'aar', 'Aa31LG1G11830' => 'aar', 'Aa31LG1G22510' => 'aar', 'Aa31LG5G4890' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5793' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2310' => 'aag', 'Actinidia08499' => 'ach', 'Actinidia11262' => 'ach', 'Actinidia23926' => 'ach', 'Actinidia34420' => 'ach', 'Actinidia36970' => 'ach', 'Ah.02g111220' => 'amhyb', 'Ah.15g097750' => 'amhyb', 'AL4G27500' => 'aly', 'AL6G11470' => 'aly', 'AL8G35950' => 'aly', 'AL8G35960' => 'aly', 'AL8G35970' => 'aly', 'Aqoxy1G00912' => 'aox', 'Aqoxy2G02253' => 'aox', 'Aqoxy2G02411' => 'aox', 'Aqoxy5G00485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BZ66YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K8ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM4FUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6BF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HFV7XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25JBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0YNNV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MAKK6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P70IT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP2Z6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V61LZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YWP64R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3S9AI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7PGHH' => 'arhy', 'AT2G32150' => 'ath', 'AT3G62040' => 'ath', 'AT5G02230' => 'ath', 'AT5G59480' => 'ath', 'AT5G59490' => 'ath', 'ATR0332G060' => 'atr', 'ATR0559G190' => 'atr', 'ATR0693G294' => 'atr', 'Atru.chr3.3975' => 'acertr', 'Atru.chr3.3976' => 'acertr', 'Atru.chr3.3977' => 'acertr', 'Atru.chr4.2498' => 'acertr', 'Atru.chr5.838' => 'acertr', 'Atru.chr8.1990' => 'acertr', 'Atru.chr8.1991' => 'acertr', 'Atru.chr8.1992' => 'acertr', 'AUR62001759' => 'cqu', 'AUR62009545' => 'cqu', 'AUR62010474' => 'cqu', 'AUR62025820' => 'cqu', 'AUR62030422' => 'cqu', 'AUR62033605' => 'cqu', 'AUR62038615' => 'cqu', 'AUR62041347' => 'cqu', 'BcaB01g04574' => 'bca', 'BcaB02g09263' => 'bca', 'BcaB02g10453' => 'bca', 'BcaB05g22513' => 'bca', 'BcaB08g36253' => 'bca', 'BcaB08g36254' => 'bca', 'BcaC01g06519' => 'bca', 'BcaC02g11889' => 'bca', 'BcaC03g14010' => 'bca', 'BcaC03g18439' => 'bca', 'BcaC04g19765' => 'bca', 'BcaC09g48432' => 'bca', 'BcaNung07302' => 'bca', 'BolC2t06040H' => 'bol', 'BolC2t07346H' => 'bol', 'BolC3t13817H' => 'bol', 'BolC4t22625H' => 'bol', 'BolC4t23297H' => 'bol', 'BolC8t51278H' => 'bol', 'BolC9t58050H' => 'bol', 'BolC9t58051H' => 'bol', 'BolC9t60163H' => 'bol', 'BraA02t04712Z' => 'bra', 'BraA02t05791Z' => 'bra', 'BraA03t10483Z' => 'bra', 'BraA05t19795Z' => 'bra', 'BraA05t20276Z' => 'bra', 'BraA09t40827Z' => 'bra', 'BraA10t43750Z' => 'bra', 'BraA10t43751Z' => 'bra', 'BraA10t45370Z' => 'bra', 'C02p00400' => 'bna', 'C02p12460' => 'bna', 'C03p13680' => 'bna', 'C04p10270' => 'bna', 'C04p17500' => 'bna', 'C08p37010' => 'bna', 'C09p51880' => 'bna', 'C09p51890' => 'bna', 'C09p74300' => 'bna', 'CAN.G179.26' => 'can', 'CAN.G3384.1' => 'can', 'CAN.G394.68' => 'can', 'CAN.G907.13' => 'can', 'CANSAT11G0012' => 'cansat', 'CANSAT25G1586' => 'cansat', 'CANSAT35G0735' => 'cansat', 'CANSAT54G0556' => 'cansat', 'CANSAT64G0356' => 'cansat', 'CANSAT78G2042' => 'cansat', 'CARHR125920' => 'chi', 'CARHR131910' => 'chi', 'CARHR172390' => 'chi', 'CARHR211140' => 'chi', 'CARHR285850' => 'chi', 'CARHR285860' => 'chi', 'Carub.0004s1347' => 'cru', 'Carub.0004s1960' => 'cru', 'Carub.0005s2880' => 'cru', 'Carub.0006s0107' => 'cru', 'Carub.0008s2015' => 'cru', 'Carub.0008s2016' => 'cru', 'Carub.0008s2017' => 'cru', 'Ca_01315_v3' => 'car', 'Ca_05063_v3' => 'car', 'Ca_10231_v3' => 'car', 'Ca_10913_v3' => 'car', 'Ca_19156_v3' => 'car', 'Ca_23644_v3' => 'car', 'Ca_26735_v3' => 'car', 'Cc01_g13130' => 'ccan', 'Cc02_g21690' => 'ccan', 'Cc03_g03600' => 'ccan', 'Cc06_g02510' => 'ccan', 'CDE02G1265' => 'cde', 'CDE05G0415' => 'cde', 'CDE08G1082' => 'cde', 'Cfa005780' => 'cfa', 'Cfa011522' => 'cfa', 'Cfa011523' => 'cfa', 'Cfa015627' => 'cfa', 'Cfa017359' => 'cfa', 'Ciclev10005687m.g' => 'ccl', 'Ciclev10012173m.g' => 'ccl', 'Ciclev10021621m.g' => 'ccl', 'Ciclev10028968m.g' => 'ccl', 'Ciclev10029907m.g' => 'ccl', 'CiPaw.01G164800' => 'cil', 'CiPaw.07G083700' => 'cil', 'CiPaw.07G127000' => 'cil', 'CiPaw.07G136900' => 'cil', 'CiPaw.08G081700' => 'cil', 'CiPaw.09G194600' => 'cil', 'CiPaw.10G146500' => 'cil', 'CiPaw.13G091500' => 'cil', 'CiPaw.13G091600' => 'cil', 'ClCG00G003390' => 'cla', 'ClCG01G007220' => 'cla', 'ClCG03G001370' => 'cla', 'ClCG04G008100' => 'cla', 'ClCG06G006110' => 'cla', 'ClCG06G006130' => 'cla', 'ClCG10G021210' => 'cla', 'COL.COLO4_07648' => 'col', 'COL.COLO4_07650' => 'col', 'COL.COLO4_07651' => 'col', 'COL.COLO4_14780' => 'col', 'COL.COLO4_18546' => 'col', 'COL.COLO4_18547' => 'col', 'COL.COLO4_23103' => 'col', 'COL.COLO4_30419' => 'col', 'COL.COLO4_34232' => 'col', 'Cpa.g.sc169.20' => 'cpa', 'Cpa.g.sc57.45' => 'cpa', 'Cpa.g.sc58.124' => 'cpa', 'Cpa.g.sc58.125' => 'cpa', 'Cpa.g.sc81.118' => 'cpa', 'Cpa.g.sc81.119' => 'cpa', 'Cre12.g524700' => 'cre', 'CsaV3_1G034430' => 'csa', 'CsaV3_1G034440' => 'csa', 'CsaV3_1G034450' => 'csa', 'CsaV3_3G034830' => 'csa', 'CsaV3_4G025090' => 'csa', 'CsaV3_5G018660' => 'csa', 'CsaV3_6G038160' => 'csa', 'CSS0003447' => 'camsi', 'CSS0017840' => 'camsi', 'CSS0019260' => 'camsi', 'CSS0040375' => 'camsi', 'CSS0042533' => 'camsi', 'DCAR_005960' => 'dca', 'DCAR_012104' => 'dca', 'DCAR_012105' => 'dca', 'DCAR_012293' => 'dca', 'DCAR_015632' => 'dca', 'DCAR_024602' => 'dca', 'DCAR_028752' => 'dca', 'Dinv06261' => 'din', 'Dinv13982' => 'din', 'Dinv17029' => 'din', 'Dinv18463' => 'din', 'Dinv33181' => 'din', 'Dinv35585' => 'din', 'Dinv37161' => 'din', 'Dinv42977' => 'din', 'Dinv43122' => 'din', 'Dinv44517' => 'din', 'Duzib093G0256' => 'dzi', 'Duzib106G1254' => 'dzi', 'Duzib128G1789' => 'dzi', 'Duzib133G0633' => 'dzi', 'Duzib138G0510' => 'dzi', 'Duzib150G1084' => 'dzi', 'Duzib168G0488' => 'dzi', 'Duzib168G1523' => 'dzi', 'Duzib170G0133' => 'dzi', 'ECA234G1433' => 'eca', 'ECA236G1432' => 'eca', 'ECA236G2256' => 'eca', 'ECA236G2365' => 'eca', 'ECA236G4830' => 'eca', 'ECA248G1505' => 'eca', 'EL10Ac3g06431' => 'bvu', 'EL10Ac5g12577' => 'bvu', 'EL10Ac6g13533' => 'bvu', 'EL10Ac7g16045' => 'bvu', 'Eucgr.A01281' => 'egr', 'Eucgr.B02326' => 'egr', 'Eucgr.H03532' => 'egr', 'Eucgr.K00553' => 'egr', 'Eucgr.K03116' => 'egr', 'FAN02G3963' => 'fan', 'FAN05G0438' => 'fan', 'FAN09G2434' => 'fan', 'FAN12G3984' => 'fan', 'FAN14G0798' => 'fan', 'FAN17G0652' => 'fan', 'FAN19G1988' => 'fan', 'FAN22G0632' => 'fan', 'FAN23G0387' => 'fan', 'FAN26G1323' => 'fan', 'FAN28G0666' => 'fan', 'FvH4_1g26080' => 'fve', 'FvH4_3g36780' => 'fve', 'FvH4_4g15270' => 'fve', 'FvH4_6g13490' => 'fve', 'Glyma.01G098700' => 'gma', 'Glyma.03G065900' => 'gma', 'Glyma.03G073754' => 'gma', 'Glyma.03G073758' => 'gma', 'Glyma.03G083200' => 'gma', 'Glyma.03G225500' => 'gma', 'Glyma.05G037766' => 'gma', 'Glyma.07G133500' => 'gma', 'Glyma.10G139400' => 'gma', 'Glyma.10G248900' => 'gma', 'Glyma.11G137800' => 'gma', 'Glyma.12G061300' => 'gma', 'Glyma.13G337900' => 'gma', 'Glyma.15G036600' => 'gma', 'Glyma.18G182800' => 'gma', 'Glyma.19G222500' => 'gma', 'Glyma.20G144800' => 'gma', 'Gohir.A01G222000' => 'ghi', 'Gohir.A03G044000' => 'ghi', 'Gohir.A03G044100' => 'ghi', 'Gohir.A04G083100' => 'ghi', 'Gohir.A07G127200' => 'ghi', 'Gohir.A07G132400' => 'ghi', 'Gohir.A08G000700' => 'ghi', 'Gohir.A11G327300' => 'ghi', 'Gohir.D01G211500' => 'ghi', 'Gohir.D03G123400' => 'ghi', 'Gohir.D03G123500' => 'ghi', 'Gohir.D04G121800' => 'ghi', 'Gohir.D07G131500' => 'ghi', 'Gohir.D07G136600' => 'ghi', 'Gohir.D08G011600' => 'ghi', 'Gohir.D11G346200' => 'ghi', 'Gorai.001G142800' => 'gra', 'Gorai.001G148700' => 'gra', 'Gorai.002G257300' => 'gra', 'Gorai.003G130000' => 'gra', 'Gorai.003G130100' => 'gra', 'Gorai.004G005300' => 'gra', 'Gorai.007G376500' => 'gra', 'Gorai.012G104700' => 'gra', 'GSVIVG01017946001' => 'vvi', 'GSVIVG01024928001' => 'vvi', 'GSVIVG01028227001' => 'vvi', 'GSVIVG01034151001' => 'vvi', 'HanXRQChr05g0135031' => 'han', 'HanXRQChr05g0135041' => 'han', 'HanXRQChr05g0140021' => 'han', 'HanXRQChr06g0178981' => 'han', 'HanXRQChr07g0188251' => 'han', 'HanXRQChr08g0235311' => 'han', 'HanXRQChr09g0271011' => 'han', 'HanXRQChr10g0293321' => 'han', 'HanXRQChr13g0388171' => 'han', 'Haze_00916' => 'cav', 'Haze_05063' => 'cav', 'Haze_20814' => 'cav', 'Haze_24128' => 'cav', 'Hma1.2p1_0745F.1_g212010' => 'hma', 'Hma1.2p1_0757F.1_g213260' => 'hma', 'Hma1.2p1_0936F.1_g238840' => 'hma', 'Hma1.2p1_1735F.1_g299890' => 'hma', 'Hma1.2p1_1861F.1_g305685' => 'hma', 'HPP92_003397' => 'vpl', 'HPP92_012597' => 'vpl', 'HPP92_015520' => 'vpl', 'HPP92_015539' => 'vpl', 'HPP92_020373' => 'vpl', 'Hund04938' => 'sun', 'Hund10677' => 'sun', 'Hund11033' => 'sun', 'Hund12155' => 'sun', 'Lalb_Chr01g0022551' => 'lal', 'Lalb_Chr03g0042341' => 'lal', 'Lalb_Chr07g0192931' => 'lal', 'Lalb_Chr12g0209551' => 'lal', 'Lalb_Chr19g0125251' => 'lal', 'Lalb_Chr19g0137891' => 'lal', 'Lalb_Chr21g0304641' => 'lal', 'Lalb_Chr21g0309881' => 'lal', 'Lj1A5T12' => 'lonja', 'Lj1C148G10' => 'lonja', 'Lj2A93T83' => 'lonja', 'Lj3A738G68' => 'lonja', 'Lj3C966T1' => 'lonja', 'Lj3g0018958' => 'lja', 'Lj3g0021831' => 'lja', 'Lj3g0025443' => 'lja', 'Lj4g0026809' => 'lja', 'Lj5g0012558' => 'lja', 'Lj5g0021586' => 'lja', 'Lsat_1_v5_gn_5_156840' => 'lsa', 'Lsat_1_v5_gn_8_73460' => 'lsa', 'Lsat_1_v5_gn_8_73481' => 'lsa', 'Lsat_1_v5_gn_9_31601' => 'lsa', 'Lsat_1_v5_gn_9_77320' => 'lsa', 'Manes.01G171300' => 'mes', 'Manes.01G171400' => 'mes', 'Manes.01G236100' => 'mes', 'Manes.02G130500' => 'mes', 'Manes.02G130600' => 'mes', 'Manes.03G180200' => 'mes', 'Manes.05G007000' => 'mes', 'Manes.08G084400' => 'mes', 'Manes.09G092600' => 'mes', 'Manes.15G027900' => 'mes', 'MBI04_g40948_MAGBIO' => 'mbi', 'MBI14_g12123_MAGBIO' => 'mbi', 'MBI18_g28915_MAGBIO' => 'mbi', 'MCO09G053' => 'mco', 'MCO11G782' => 'mco', 'MCO15G215' => 'mco', 'MD03G1088500' => 'mdo', 'MD03G1088600' => 'mdo', 'MD04G1130800' => 'mdo', 'MD09G1291700' => 'mdo', 'MD11G1097500' => 'mdo', 'MD11G1097600' => 'mdo', 'MD12G1143900' => 'mdo', 'MD13G1191400' => 'mdo', 'MD16G1191500' => 'mdo', 'Medtr1g085570' => 'mtr', 'Medtr1g104610' => 'mtr', 'Medtr2g097520' => 'mtr', 'Medtr4g021800' => 'mtr', 'Medtr4g021825' => 'mtr', 'Medtr4g064270' => 'mtr', 'Medtr4g064380' => 'mtr', 'Medtr7g062150' => 'mtr', 'MELO3C003138.2' => 'cme', 'MELO3C005187.2' => 'cme', 'MELO3C009252.2' => 'cme', 'MELO3C014481.2' => 'cme', 'MELO3C020616.2' => 'cme', 'MELO3C020617.2' => 'cme', 'MELO3C020618.2' => 'cme', 'Migut.G00328' => 'egut', 'Migut.J00320' => 'egut', 'Migut.L01000' => 'egut', 'Migut.L01953' => 'egut', 'MSTRG.10253' => 'ama', 'MSTRG.19077' => 'ama', 'MSTRG.26780' => 'ama', 'MSTRG.4023' => 'ama', 'MSTRG.5655' => 'ama', 'MSTRG.9992' => 'ama', 'Nitab4.5_0000043g0310' => 'nta', 'Nitab4.5_0000463g0080' => 'nta', 'Nitab4.5_0000705g0170' => 'nta', 'Nitab4.5_0001326g0060' => 'nta', 'Nitab4.5_0001628g0030' => 'nta', 'Nitab4.5_0002103g0110' => 'nta', 'Nitab4.5_0002946g0030' => 'nta', 'Nitab4.5_0004639g0030' => 'nta', 'Nn2g11149' => 'nnu', 'Nn2g13389' => 'nnu', 'Nn4g25326' => 'nnu', 'Nn4g26290' => 'nnu', 'Nn5g29865' => 'nnu', 'Oeu004163.1' => 'oeu', 'Oeu006901.1' => 'oeu', 'Oeu010096.1' => 'oeu', 'Oeu024340.1' => 'oeu', 'Oeu048369.1' => 'oeu', 'Os01g0973000' => 'osa', 'Os03g0273800' => 'osa', 'Os03g0701200' => 'osa', 'Os03g0834050' => 'osa', 'Os07g0634400' => 'osa', 'Peaxi162Scf00092g01414' => 'pax', 'Peaxi162Scf00165g00818' => 'pax', 'Peaxi162Scf00309g00516' => 'pax', 'Peaxi162Scf00774g00218' => 'pax', 'PGR004G1824' => 'pgr', 'PGR004G2606' => 'pgr', 'PGR031G2716' => 'pgr', 'PGR102G2460' => 'pgr', 'PGR142G2599' => 'pgr', 'PGSC0003DMG400000843' => 'stu', 'PGSC0003DMG400008829' => 'stu', 'PGSC0003DMG400030418' => 'stu', 'PGSC0003DMG400031834' => 'stu', 'PGSC0003DMG401028300' => 'stu', 'PGSC0003DMG402028300' => 'stu', 'Phvul.001G219300' => 'pvu', 'Phvul.007G056000' => 'pvu', 'Phvul.007G208000' => 'pvu', 'Phvul.008G119500' => 'pvu', 'Phvul.010G011200' => 'pvu', 'Phvul.010G014800' => 'pvu', 'Phvul.011G062900' => 'pvu', 'Phvul.L007043' => 'pvu', 'Potri.001G242300' => 'ptr', 'Potri.002G185300' => 'ptr', 'Potri.006G086900' => 'ptr', 'Potri.008G151700' => 'ptr', 'Potri.009G033500' => 'ptr', 'Potri.010G089300' => 'ptr', 'Potri.014G110800' => 'ptr', 'Pp3c27_8130' => 'ppa', 'Pp3c6_27410' => 'ppa', 'PRCOL_00001659' => 'pco', 'PRCOL_00001927' => 'pco', 'PRCOL_00003649' => 'pco', 'Prupe.1G011600' => 'ppe', 'Prupe.3G000800' => 'ppe', 'Prupe.3G001100' => 'ppe', 'Prupe.6G072700' => 'ppe', 'Prupe.6G072800' => 'ppe', 'Prupe.6G257300' => 'ppe', 'Prupe.8G033000' => 'ppe', 'Psat0s2633g0080' => 'psa', 'Psat0s3396g0080' => 'psa', 'Psat0s3396g0200' => 'psa', 'Psat3g139080' => 'psa', 'Psat5g285080' => 'psa', 'Psat6g157760' => 'psa', 'Psat6g208440' => 'psa', 'Psat7g215320' => 'psa', 'Psat7g215400' => 'psa', 'Psat7g235600' => 'psa', 'Psat7g235760' => 'psa', 'PSO063G4603' => 'pso', 'PSO210G0182' => 'pso', 'PSO210G0196' => 'pso', 'PSO339G0394' => 'pso', 'PSO339G4127' => 'pso', 'PSO513G0064' => 'pso', 'PSO761G0079' => 'pso', 'QL01p031003' => 'qlo', 'QL01p031078' => 'qlo', 'QL06p003004' => 'qlo', 'QL07p048731' => 'qlo', 'QL09p037427' => 'qlo', 'RcHm_v2.0_Chr3g0466361' => 'rch', 'RcHm_v2.0_Chr3g0485571' => 'rch', 'RcHm_v2.0_Chr4g0416551' => 'rch', 'RcHm_v2.0_Chr5g0065831' => 'rch', 'Rhsim01G0230500' => 'rsi', 'Rhsim05G0194000' => 'rsi', 'Rhsim08G0250400' => 'rsi', 'Sabra02G0131000' => 'sbr', 'Sabra06G0066300' => 'sbr', 'Sabra08G0115500' => 'sbr', 'Sabra09G0023900' => 'sbr', 'Sabra10G0054000' => 'sbr', 'Sabra14G0081500' => 'sbr', 'Sabra16G0147100' => 'sbr', 'SalBow2G2957' => 'sbo', 'SalBow4G3320' => 'sbo', 'SalBow8G1894' => 'sbo', 'Sc07g0007950' => 'sci', 'Sc12g0001360' => 'sci', 'Sc13g0004330' => 'sci', 'Sc20g0005010' => 'sci', 'Sed0000361' => 'sed', 'Sed0001706' => 'sed', 'Sed0002422' => 'sed', 'Sed0004029' => 'sed', 'Sed0004602' => 'sed', 'Sed0004943' => 'sed', 'Sed0008646' => 'sed', 'Sed0023313' => 'sed', 'Sed0024843' => 'sed', 'SEGI_00081' => 'sgi', 'SEGI_00947' => 'sgi', 'SEGI_04046' => 'sgi', 'SEGI_06880' => 'sgi', 'SEGI_09736' => 'sgi', 'SEGI_12741' => 'sgi', 'SEGI_14530' => 'sgi', 'SEGI_20705' => 'sgi', 'SEGI_26088' => 'sgi', 'SEGI_28323' => 'sgi', 'SEGI_33343' => 'sgi', 'SGA_v2.0_scaffold126G33775' => 'sas', 'SGA_v2.0_scaffold2G01337' => 'sas', 'SGA_v2.0_scaffold38G15006' => 'sas', 'SGA_v2.0_scaffold39G15264' => 'sas', 'SGA_v2.0_scaffold453G51880' => 'sas', 'SHI12696' => 'shi', 'SMO367G1096' => 'smo', 'Solyc01g068630.3' => 'sly', 'Solyc05g011880.3' => 'sly', 'Solyc06g076300.3' => 'sly', 'Solyc09g010940.4' => 'sly', 'Solyc09g075890.3' => 'sly', 'Sopen01g030560' => 'spe', 'Sopen05g006630' => 'spe', 'Sopen06g032720' => 'spe', 'Sopen09g005660' => 'spe', 'Sopen09g030690' => 'spe', 'Sp4g14540' => 'spa', 'Sp4g20030' => 'spa', 'Sp5g01320' => 'spa', 'Sp6g21170' => 'spa', 'Sp6g21180' => 'spa', 'Sp6g21190' => 'spa', 'Sp6g40220' => 'spa', 'TAR362G0122' => 'tar', 'TAR362G1338' => 'tar', 'TAR369G0590' => 'tar', 'TAR371G0824' => 'tar', 'TAR622G1429' => 'tar', 'TAR623G0734' => 'tar', 'TAR625G0441' => 'tar', 'TAR629G0976' => 'tar', 'TAR633G1195' => 'tar', 'TAR636G2660' => 'tar', 'THA.LOC104799440' => 'tha', 'THA.LOC104800966' => 'tha', 'THA.LOC104806559' => 'tha', 'THA.LOC104810765' => 'tha', 'THA.LOC104816266' => 'tha', 'THA.LOC104817419' => 'tha', 'THA.LOC104827021' => 'tha', 'Thecc.01G327400' => 'tca', 'Thecc.04G229200' => 'tca', 'Thecc.05G037400' => 'tca', 'Thecc.09G318600' => 'tca', 'Thecc.09G318700' => 'tca', 'Thhalv10006238m.g' => 'esa', 'Thhalv10014321m.g' => 'esa', 'Thhalv10014335m.g' => 'esa', 'Thhalv10015826m.g' => 'esa', 'Thhalv10017107m.g' => 'esa', 'Thhalv10017180m.g' => 'esa', 'Thhalv10029339m.g' => 'esa', 'TPR.G1699' => 'tpr', 'TPR.G23609' => 'tpr', 'TPR.G3081' => 'tpr', 'TPR.G40397' => 'tpr', 'TPR.G5522' => 'tpr', 'TPR.G5618' => 'tpr', 'TPR.G5626' => 'tpr', 'TWI09G1632' => 'twi', 'TWI23G1230' => 'twi', 'TWI53G1064' => 'twi', 'TWI59G0751' => 'twi', 'TWI74G0947' => 'twi', 'TWI77G0337' => 'twi', 'TWI79G1254' => 'twi', 'unitig_0.g2341' => 'ugi', 'unitig_26.g10006' => 'ugi', 'unitig_26.g10008' => 'ugi', 'unitig_26.g9192' => 'ugi', 'vmacro14547' => 'vma', 'vmacro15333' => 'vma', 'vmacro18743' => 'vma', 'vmacro20166' => 'vma', 'VMungo0331G0523' => 'vmu', 'VMungo0331G1202' => 'vmu', 'VMungo0720G1228' => 'vmu', 'VMungo0720G1514' => 'vmu', 'VMungo1080G0169' => 'vmu', 'VMungo1127G1475' => 'vmu', 'VMungo1383G1208' => 'vmu', 'VMungo1383G1698' => 'vmu', 'Zm00001eb012270' => 'zma', 'Zm00001eb054100' => 'zma', 'Zm00001eb063350' => 'zma', 'Zm00001eb328560' => 'zma', 'Zm00001eb342820' => 'zma', 'Zm00001eb362210' => 'zma', 'Zm00001eb397730' => 'zma', 'Zm00001eb399750' => 'zma' ), 'gf_id' => 'HOM05D000959', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000959' ), 'data_identifier' => 'HOM05D000959', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000959', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '622', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p07100' => 'bna', 'A03p11720' => 'bna', 'A05p08300' => 'bna', 'A05p13380' => 'bna', 'A09p54130' => 'bna', 'A10p16690' => 'bna', 'A10p16700' => 'bna', 'A10p33390' => 'bna', 'Aa31LG10G16020' => 'aar', 'Aa31LG1G11810' => 'aar', 'Aa31LG1G11830' => 'aar', 'Aa31LG1G22510' => 'aar', 'Aa31LG5G4890' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5793' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2310' => 'aag', 'Actinidia08499' => 'ach', 'Actinidia11262' => 'ach', 'Actinidia23926' => 'ach', 'Actinidia34420' => 'ach', 'Actinidia36970' => 'ach', 'Ah.02g111220' => 'amhyb', 'Ah.15g097750' => 'amhyb', 'AL4G27500' => 'aly', 'AL6G11470' => 'aly', 'AL8G35950' => 'aly', 'AL8G35960' => 'aly', 'AL8G35970' => 'aly', 'Aqoxy1G00912' => 'aox', 'Aqoxy2G02253' => 'aox', 'Aqoxy2G02411' => 'aox', 'Aqoxy5G00485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BZ66YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K8ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM4FUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6BF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HFV7XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25JBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0YNNV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MAKK6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P70IT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP2Z6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V61LZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YWP64R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3S9AI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7PGHH' => 'arhy', 'AT2G32150' => 'ath', 'AT3G62040' => 'ath', 'AT5G02230' => 'ath', 'AT5G59480' => 'ath', 'AT5G59490' => 'ath', 'ATR0332G060' => 'atr', 'ATR0559G190' => 'atr', 'ATR0693G294' => 'atr', 'Atru.chr3.3975' => 'acertr', 'Atru.chr3.3976' => 'acertr', 'Atru.chr3.3977' => 'acertr', 'Atru.chr4.2498' => 'acertr', 'Atru.chr5.838' => 'acertr', 'Atru.chr8.1990' => 'acertr', 'Atru.chr8.1991' => 'acertr', 'Atru.chr8.1992' => 'acertr', 'AUR62001759' => 'cqu', 'AUR62009545' => 'cqu', 'AUR62010474' => 'cqu', 'AUR62025820' => 'cqu', 'AUR62030422' => 'cqu', 'AUR62033605' => 'cqu', 'AUR62038615' => 'cqu', 'AUR62041347' => 'cqu', 'BcaB01g04574' => 'bca', 'BcaB02g09263' => 'bca', 'BcaB02g10453' => 'bca', 'BcaB05g22513' => 'bca', 'BcaB08g36253' => 'bca', 'BcaB08g36254' => 'bca', 'BcaC01g06519' => 'bca', 'BcaC02g11889' => 'bca', 'BcaC03g14010' => 'bca', 'BcaC03g18439' => 'bca', 'BcaC04g19765' => 'bca', 'BcaC09g48432' => 'bca', 'BcaNung07302' => 'bca', 'BolC2t06040H' => 'bol', 'BolC2t07346H' => 'bol', 'BolC3t13817H' => 'bol', 'BolC4t22625H' => 'bol', 'BolC4t23297H' => 'bol', 'BolC8t51278H' => 'bol', 'BolC9t58050H' => 'bol', 'BolC9t58051H' => 'bol', 'BolC9t60163H' => 'bol', 'BraA02t04712Z' => 'bra', 'BraA02t05791Z' => 'bra', 'BraA03t10483Z' => 'bra', 'BraA05t19795Z' => 'bra', 'BraA05t20276Z' => 'bra', 'BraA09t40827Z' => 'bra', 'BraA10t43750Z' => 'bra', 'BraA10t43751Z' => 'bra', 'BraA10t45370Z' => 'bra', 'C02p00400' => 'bna', 'C02p12460' => 'bna', 'C03p13680' => 'bna', 'C04p10270' => 'bna', 'C04p17500' => 'bna', 'C08p37010' => 'bna', 'C09p51880' => 'bna', 'C09p51890' => 'bna', 'C09p74300' => 'bna', 'CAN.G179.26' => 'can', 'CAN.G3384.1' => 'can', 'CAN.G394.68' => 'can', 'CAN.G907.13' => 'can', 'CANSAT11G0012' => 'cansat', 'CANSAT25G1586' => 'cansat', 'CANSAT35G0735' => 'cansat', 'CANSAT54G0556' => 'cansat', 'CANSAT64G0356' => 'cansat', 'CANSAT78G2042' => 'cansat', 'CARHR125920' => 'chi', 'CARHR131910' => 'chi', 'CARHR172390' => 'chi', 'CARHR211140' => 'chi', 'CARHR285850' => 'chi', 'CARHR285860' => 'chi', 'Carub.0004s1347' => 'cru', 'Carub.0004s1960' => 'cru', 'Carub.0005s2880' => 'cru', 'Carub.0006s0107' => 'cru', 'Carub.0008s2015' => 'cru', 'Carub.0008s2016' => 'cru', 'Carub.0008s2017' => 'cru', 'Ca_01315_v3' => 'car', 'Ca_05063_v3' => 'car', 'Ca_10231_v3' => 'car', 'Ca_10913_v3' => 'car', 'Ca_19156_v3' => 'car', 'Ca_23644_v3' => 'car', 'Ca_26735_v3' => 'car', 'Cc01_g13130' => 'ccan', 'Cc02_g21690' => 'ccan', 'Cc03_g03600' => 'ccan', 'Cc06_g02510' => 'ccan', 'CDE02G1265' => 'cde', 'CDE05G0415' => 'cde', 'CDE08G1082' => 'cde', 'Cfa005780' => 'cfa', 'Cfa011522' => 'cfa', 'Cfa011523' => 'cfa', 'Cfa015627' => 'cfa', 'Cfa017359' => 'cfa', 'Ciclev10005687m.g' => 'ccl', 'Ciclev10012173m.g' => 'ccl', 'Ciclev10021621m.g' => 'ccl', 'Ciclev10028968m.g' => 'ccl', 'Ciclev10029907m.g' => 'ccl', 'CiPaw.01G164800' => 'cil', 'CiPaw.07G083700' => 'cil', 'CiPaw.07G127000' => 'cil', 'CiPaw.07G136900' => 'cil', 'CiPaw.08G081700' => 'cil', 'CiPaw.09G194600' => 'cil', 'CiPaw.10G146500' => 'cil', 'CiPaw.13G091500' => 'cil', 'CiPaw.13G091600' => 'cil', 'ClCG00G003390' => 'cla', 'ClCG01G007220' => 'cla', 'ClCG03G001370' => 'cla', 'ClCG04G008100' => 'cla', 'ClCG06G006110' => 'cla', 'ClCG06G006130' => 'cla', 'ClCG10G021210' => 'cla', 'COL.COLO4_07648' => 'col', 'COL.COLO4_07650' => 'col', 'COL.COLO4_07651' => 'col', 'COL.COLO4_14780' => 'col', 'COL.COLO4_18546' => 'col', 'COL.COLO4_18547' => 'col', 'COL.COLO4_23103' => 'col', 'COL.COLO4_30419' => 'col', 'COL.COLO4_34232' => 'col', 'Cpa.g.sc169.20' => 'cpa', 'Cpa.g.sc57.45' => 'cpa', 'Cpa.g.sc58.124' => 'cpa', 'Cpa.g.sc58.125' => 'cpa', 'Cpa.g.sc81.118' => 'cpa', 'Cpa.g.sc81.119' => 'cpa', 'Cre12.g524700' => 'cre', 'CsaV3_1G034430' => 'csa', 'CsaV3_1G034440' => 'csa', 'CsaV3_1G034450' => 'csa', 'CsaV3_3G034830' => 'csa', 'CsaV3_4G025090' => 'csa', 'CsaV3_5G018660' => 'csa', 'CsaV3_6G038160' => 'csa', 'CSS0003447' => 'camsi', 'CSS0017840' => 'camsi', 'CSS0019260' => 'camsi', 'CSS0040375' => 'camsi', 'CSS0042533' => 'camsi', 'DCAR_005960' => 'dca', 'DCAR_012104' => 'dca', 'DCAR_012105' => 'dca', 'DCAR_012293' => 'dca', 'DCAR_015632' => 'dca', 'DCAR_024602' => 'dca', 'DCAR_028752' => 'dca', 'Dinv06261' => 'din', 'Dinv13982' => 'din', 'Dinv17029' => 'din', 'Dinv18463' => 'din', 'Dinv33181' => 'din', 'Dinv35585' => 'din', 'Dinv37161' => 'din', 'Dinv42977' => 'din', 'Dinv43122' => 'din', 'Dinv44517' => 'din', 'Duzib093G0256' => 'dzi', 'Duzib106G1254' => 'dzi', 'Duzib128G1789' => 'dzi', 'Duzib133G0633' => 'dzi', 'Duzib138G0510' => 'dzi', 'Duzib150G1084' => 'dzi', 'Duzib168G0488' => 'dzi', 'Duzib168G1523' => 'dzi', 'Duzib170G0133' => 'dzi', 'ECA234G1433' => 'eca', 'ECA236G1432' => 'eca', 'ECA236G2256' => 'eca', 'ECA236G2365' => 'eca', 'ECA236G4830' => 'eca', 'ECA248G1505' => 'eca', 'EL10Ac3g06431' => 'bvu', 'EL10Ac5g12577' => 'bvu', 'EL10Ac6g13533' => 'bvu', 'EL10Ac7g16045' => 'bvu', 'Eucgr.A01281' => 'egr', 'Eucgr.B02326' => 'egr', 'Eucgr.H03532' => 'egr', 'Eucgr.K00553' => 'egr', 'Eucgr.K03116' => 'egr', 'FAN02G3963' => 'fan', 'FAN05G0438' => 'fan', 'FAN09G2434' => 'fan', 'FAN12G3984' => 'fan', 'FAN14G0798' => 'fan', 'FAN17G0652' => 'fan', 'FAN19G1988' => 'fan', 'FAN22G0632' => 'fan', 'FAN23G0387' => 'fan', 'FAN26G1323' => 'fan', 'FAN28G0666' => 'fan', 'FvH4_1g26080' => 'fve', 'FvH4_3g36780' => 'fve', 'FvH4_4g15270' => 'fve', 'FvH4_6g13490' => 'fve', 'Glyma.01G098700' => 'gma', 'Glyma.03G065900' => 'gma', 'Glyma.03G073754' => 'gma', 'Glyma.03G073758' => 'gma', 'Glyma.03G083200' => 'gma', 'Glyma.03G225500' => 'gma', 'Glyma.05G037766' => 'gma', 'Glyma.07G133500' => 'gma', 'Glyma.10G139400' => 'gma', 'Glyma.10G248900' => 'gma', 'Glyma.11G137800' => 'gma', 'Glyma.12G061300' => 'gma', 'Glyma.13G337900' => 'gma', 'Glyma.15G036600' => 'gma', 'Glyma.18G182800' => 'gma', 'Glyma.19G222500' => 'gma', 'Glyma.20G144800' => 'gma', 'Gohir.A01G222000' => 'ghi', 'Gohir.A03G044000' => 'ghi', 'Gohir.A03G044100' => 'ghi', 'Gohir.A04G083100' => 'ghi', 'Gohir.A07G127200' => 'ghi', 'Gohir.A07G132400' => 'ghi', 'Gohir.A08G000700' => 'ghi', 'Gohir.A11G327300' => 'ghi', 'Gohir.D01G211500' => 'ghi', 'Gohir.D03G123400' => 'ghi', 'Gohir.D03G123500' => 'ghi', 'Gohir.D04G121800' => 'ghi', 'Gohir.D07G131500' => 'ghi', 'Gohir.D07G136600' => 'ghi', 'Gohir.D08G011600' => 'ghi', 'Gohir.D11G346200' => 'ghi', 'Gorai.001G142800' => 'gra', 'Gorai.001G148700' => 'gra', 'Gorai.002G257300' => 'gra', 'Gorai.003G130000' => 'gra', 'Gorai.003G130100' => 'gra', 'Gorai.004G005300' => 'gra', 'Gorai.007G376500' => 'gra', 'Gorai.012G104700' => 'gra', 'GSVIVG01017946001' => 'vvi', 'GSVIVG01024928001' => 'vvi', 'GSVIVG01028227001' => 'vvi', 'GSVIVG01034151001' => 'vvi', 'HanXRQChr05g0135031' => 'han', 'HanXRQChr05g0135041' => 'han', 'HanXRQChr05g0140021' => 'han', 'HanXRQChr06g0178981' => 'han', 'HanXRQChr07g0188251' => 'han', 'HanXRQChr08g0235311' => 'han', 'HanXRQChr09g0271011' => 'han', 'HanXRQChr10g0293321' => 'han', 'HanXRQChr13g0388171' => 'han', 'Haze_00916' => 'cav', 'Haze_05063' => 'cav', 'Haze_20814' => 'cav', 'Haze_24128' => 'cav', 'Hma1.2p1_0745F.1_g212010' => 'hma', 'Hma1.2p1_0757F.1_g213260' => 'hma', 'Hma1.2p1_0936F.1_g238840' => 'hma', 'Hma1.2p1_1735F.1_g299890' => 'hma', 'Hma1.2p1_1861F.1_g305685' => 'hma', 'HPP92_003397' => 'vpl', 'HPP92_012597' => 'vpl', 'HPP92_015520' => 'vpl', 'HPP92_015539' => 'vpl', 'HPP92_020373' => 'vpl', 'Hund04938' => 'sun', 'Hund10677' => 'sun', 'Hund11033' => 'sun', 'Hund12155' => 'sun', 'Lalb_Chr01g0022551' => 'lal', 'Lalb_Chr03g0042341' => 'lal', 'Lalb_Chr07g0192931' => 'lal', 'Lalb_Chr12g0209551' => 'lal', 'Lalb_Chr19g0125251' => 'lal', 'Lalb_Chr19g0137891' => 'lal', 'Lalb_Chr21g0304641' => 'lal', 'Lalb_Chr21g0309881' => 'lal', 'Lj1A5T12' => 'lonja', 'Lj1C148G10' => 'lonja', 'Lj2A93T83' => 'lonja', 'Lj3A738G68' => 'lonja', 'Lj3C966T1' => 'lonja', 'Lj3g0018958' => 'lja', 'Lj3g0021831' => 'lja', 'Lj3g0025443' => 'lja', 'Lj4g0026809' => 'lja', 'Lj5g0012558' => 'lja', 'Lj5g0021586' => 'lja', 'Lsat_1_v5_gn_5_156840' => 'lsa', 'Lsat_1_v5_gn_8_73460' => 'lsa', 'Lsat_1_v5_gn_8_73481' => 'lsa', 'Lsat_1_v5_gn_9_31601' => 'lsa', 'Lsat_1_v5_gn_9_77320' => 'lsa', 'Manes.01G171300' => 'mes', 'Manes.01G171400' => 'mes', 'Manes.01G236100' => 'mes', 'Manes.02G130500' => 'mes', 'Manes.02G130600' => 'mes', 'Manes.03G180200' => 'mes', 'Manes.05G007000' => 'mes', 'Manes.08G084400' => 'mes', 'Manes.09G092600' => 'mes', 'Manes.15G027900' => 'mes', 'MBI04_g40948_MAGBIO' => 'mbi', 'MBI14_g12123_MAGBIO' => 'mbi', 'MBI18_g28915_MAGBIO' => 'mbi', 'MCO09G053' => 'mco', 'MCO11G782' => 'mco', 'MCO15G215' => 'mco', 'MD03G1088500' => 'mdo', 'MD03G1088600' => 'mdo', 'MD04G1130800' => 'mdo', 'MD09G1291700' => 'mdo', 'MD11G1097500' => 'mdo', 'MD11G1097600' => 'mdo', 'MD12G1143900' => 'mdo', 'MD13G1191400' => 'mdo', 'MD16G1191500' => 'mdo', 'Medtr1g085570' => 'mtr', 'Medtr1g104610' => 'mtr', 'Medtr2g097520' => 'mtr', 'Medtr4g021800' => 'mtr', 'Medtr4g021825' => 'mtr', 'Medtr4g064270' => 'mtr', 'Medtr4g064380' => 'mtr', 'Medtr7g062150' => 'mtr', 'MELO3C003138.2' => 'cme', 'MELO3C005187.2' => 'cme', 'MELO3C009252.2' => 'cme', 'MELO3C014481.2' => 'cme', 'MELO3C020616.2' => 'cme', 'MELO3C020617.2' => 'cme', 'MELO3C020618.2' => 'cme', 'Migut.G00328' => 'egut', 'Migut.J00320' => 'egut', 'Migut.L01000' => 'egut', 'Migut.L01953' => 'egut', 'MSTRG.10253' => 'ama', 'MSTRG.19077' => 'ama', 'MSTRG.26780' => 'ama', 'MSTRG.4023' => 'ama', 'MSTRG.5655' => 'ama', 'MSTRG.9992' => 'ama', 'Nitab4.5_0000043g0310' => 'nta', 'Nitab4.5_0000463g0080' => 'nta', 'Nitab4.5_0000705g0170' => 'nta', 'Nitab4.5_0001326g0060' => 'nta', 'Nitab4.5_0001628g0030' => 'nta', 'Nitab4.5_0002103g0110' => 'nta', 'Nitab4.5_0002946g0030' => 'nta', 'Nitab4.5_0004639g0030' => 'nta', 'Nn2g11149' => 'nnu', 'Nn2g13389' => 'nnu', 'Nn4g25326' => 'nnu', 'Nn4g26290' => 'nnu', 'Nn5g29865' => 'nnu', 'Oeu004163.1' => 'oeu', 'Oeu006901.1' => 'oeu', 'Oeu010096.1' => 'oeu', 'Oeu024340.1' => 'oeu', 'Oeu048369.1' => 'oeu', 'Os01g0973000' => 'osa', 'Os03g0273800' => 'osa', 'Os03g0701200' => 'osa', 'Os03g0834050' => 'osa', 'Os07g0634400' => 'osa', 'Peaxi162Scf00092g01414' => 'pax', 'Peaxi162Scf00165g00818' => 'pax', 'Peaxi162Scf00309g00516' => 'pax', 'Peaxi162Scf00774g00218' => 'pax', 'PGR004G1824' => 'pgr', 'PGR004G2606' => 'pgr', 'PGR031G2716' => 'pgr', 'PGR102G2460' => 'pgr', 'PGR142G2599' => 'pgr', 'PGSC0003DMG400000843' => 'stu', 'PGSC0003DMG400008829' => 'stu', 'PGSC0003DMG400030418' => 'stu', 'PGSC0003DMG400031834' => 'stu', 'PGSC0003DMG401028300' => 'stu', 'PGSC0003DMG402028300' => 'stu', 'Phvul.001G219300' => 'pvu', 'Phvul.007G056000' => 'pvu', 'Phvul.007G208000' => 'pvu', 'Phvul.008G119500' => 'pvu', 'Phvul.010G011200' => 'pvu', 'Phvul.010G014800' => 'pvu', 'Phvul.011G062900' => 'pvu', 'Phvul.L007043' => 'pvu', 'Potri.001G242300' => 'ptr', 'Potri.002G185300' => 'ptr', 'Potri.006G086900' => 'ptr', 'Potri.008G151700' => 'ptr', 'Potri.009G033500' => 'ptr', 'Potri.010G089300' => 'ptr', 'Potri.014G110800' => 'ptr', 'Pp3c27_8130' => 'ppa', 'Pp3c6_27410' => 'ppa', 'PRCOL_00001659' => 'pco', 'PRCOL_00001927' => 'pco', 'PRCOL_00003649' => 'pco', 'Prupe.1G011600' => 'ppe', 'Prupe.3G000800' => 'ppe', 'Prupe.3G001100' => 'ppe', 'Prupe.6G072700' => 'ppe', 'Prupe.6G072800' => 'ppe', 'Prupe.6G257300' => 'ppe', 'Prupe.8G033000' => 'ppe', 'Psat0s2633g0080' => 'psa', 'Psat0s3396g0080' => 'psa', 'Psat0s3396g0200' => 'psa', 'Psat3g139080' => 'psa', 'Psat5g285080' => 'psa', 'Psat6g157760' => 'psa', 'Psat6g208440' => 'psa', 'Psat7g215320' => 'psa', 'Psat7g215400' => 'psa', 'Psat7g235600' => 'psa', 'Psat7g235760' => 'psa', 'PSO063G4603' => 'pso', 'PSO210G0182' => 'pso', 'PSO210G0196' => 'pso', 'PSO339G0394' => 'pso', 'PSO339G4127' => 'pso', 'PSO513G0064' => 'pso', 'PSO761G0079' => 'pso', 'QL01p031003' => 'qlo', 'QL01p031078' => 'qlo', 'QL06p003004' => 'qlo', 'QL07p048731' => 'qlo', 'QL09p037427' => 'qlo', 'RcHm_v2.0_Chr3g0466361' => 'rch', 'RcHm_v2.0_Chr3g0485571' => 'rch', 'RcHm_v2.0_Chr4g0416551' => 'rch', 'RcHm_v2.0_Chr5g0065831' => 'rch', 'Rhsim01G0230500' => 'rsi', 'Rhsim05G0194000' => 'rsi', 'Rhsim08G0250400' => 'rsi', 'Sabra02G0131000' => 'sbr', 'Sabra06G0066300' => 'sbr', 'Sabra08G0115500' => 'sbr', 'Sabra09G0023900' => 'sbr', 'Sabra10G0054000' => 'sbr', 'Sabra14G0081500' => 'sbr', 'Sabra16G0147100' => 'sbr', 'SalBow2G2957' => 'sbo', 'SalBow4G3320' => 'sbo', 'SalBow8G1894' => 'sbo', 'Sc07g0007950' => 'sci', 'Sc12g0001360' => 'sci', 'Sc13g0004330' => 'sci', 'Sc20g0005010' => 'sci', 'Sed0000361' => 'sed', 'Sed0001706' => 'sed', 'Sed0002422' => 'sed', 'Sed0004029' => 'sed', 'Sed0004602' => 'sed', 'Sed0004943' => 'sed', 'Sed0008646' => 'sed', 'Sed0023313' => 'sed', 'Sed0024843' => 'sed', 'SEGI_00081' => 'sgi', 'SEGI_00947' => 'sgi', 'SEGI_04046' => 'sgi', 'SEGI_06880' => 'sgi', 'SEGI_09736' => 'sgi', 'SEGI_12741' => 'sgi', 'SEGI_14530' => 'sgi', 'SEGI_20705' => 'sgi', 'SEGI_26088' => 'sgi', 'SEGI_28323' => 'sgi', 'SEGI_33343' => 'sgi', 'SGA_v2.0_scaffold126G33775' => 'sas', 'SGA_v2.0_scaffold2G01337' => 'sas', 'SGA_v2.0_scaffold38G15006' => 'sas', 'SGA_v2.0_scaffold39G15264' => 'sas', 'SGA_v2.0_scaffold453G51880' => 'sas', 'SHI12696' => 'shi', 'SMO367G1096' => 'smo', 'Solyc01g068630.3' => 'sly', 'Solyc05g011880.3' => 'sly', 'Solyc06g076300.3' => 'sly', 'Solyc09g010940.4' => 'sly', 'Solyc09g075890.3' => 'sly', 'Sopen01g030560' => 'spe', 'Sopen05g006630' => 'spe', 'Sopen06g032720' => 'spe', 'Sopen09g005660' => 'spe', 'Sopen09g030690' => 'spe', 'Sp4g14540' => 'spa', 'Sp4g20030' => 'spa', 'Sp5g01320' => 'spa', 'Sp6g21170' => 'spa', 'Sp6g21180' => 'spa', 'Sp6g21190' => 'spa', 'Sp6g40220' => 'spa', 'TAR362G0122' => 'tar', 'TAR362G1338' => 'tar', 'TAR369G0590' => 'tar', 'TAR371G0824' => 'tar', 'TAR622G1429' => 'tar', 'TAR623G0734' => 'tar', 'TAR625G0441' => 'tar', 'TAR629G0976' => 'tar', 'TAR633G1195' => 'tar', 'TAR636G2660' => 'tar', 'THA.LOC104799440' => 'tha', 'THA.LOC104800966' => 'tha', 'THA.LOC104806559' => 'tha', 'THA.LOC104810765' => 'tha', 'THA.LOC104816266' => 'tha', 'THA.LOC104817419' => 'tha', 'THA.LOC104827021' => 'tha', 'Thecc.01G327400' => 'tca', 'Thecc.04G229200' => 'tca', 'Thecc.05G037400' => 'tca', 'Thecc.09G318600' => 'tca', 'Thecc.09G318700' => 'tca', 'Thhalv10006238m.g' => 'esa', 'Thhalv10014321m.g' => 'esa', 'Thhalv10014335m.g' => 'esa', 'Thhalv10015826m.g' => 'esa', 'Thhalv10017107m.g' => 'esa', 'Thhalv10017180m.g' => 'esa', 'Thhalv10029339m.g' => 'esa', 'TPR.G1699' => 'tpr', 'TPR.G23609' => 'tpr', 'TPR.G3081' => 'tpr', 'TPR.G40397' => 'tpr', 'TPR.G5522' => 'tpr', 'TPR.G5618' => 'tpr', 'TPR.G5626' => 'tpr', 'TWI09G1632' => 'twi', 'TWI23G1230' => 'twi', 'TWI53G1064' => 'twi', 'TWI59G0751' => 'twi', 'TWI74G0947' => 'twi', 'TWI77G0337' => 'twi', 'TWI79G1254' => 'twi', 'unitig_0.g2341' => 'ugi', 'unitig_26.g10006' => 'ugi', 'unitig_26.g10008' => 'ugi', 'unitig_26.g9192' => 'ugi', 'vmacro14547' => 'vma', 'vmacro15333' => 'vma', 'vmacro18743' => 'vma', 'vmacro20166' => 'vma', 'VMungo0331G0523' => 'vmu', 'VMungo0331G1202' => 'vmu', 'VMungo0720G1228' => 'vmu', 'VMungo0720G1514' => 'vmu', 'VMungo1080G0169' => 'vmu', 'VMungo1127G1475' => 'vmu', 'VMungo1383G1208' => 'vmu', 'VMungo1383G1698' => 'vmu', 'Zm00001eb012270' => 'zma', 'Zm00001eb054100' => 'zma', 'Zm00001eb063350' => 'zma', 'Zm00001eb328560' => 'zma', 'Zm00001eb342820' => 'zma', 'Zm00001eb362210' => 'zma', 'Zm00001eb397730' => 'zma', 'Zm00001eb399750' => 'zma' ) $gf_id = 'HOM05D000959' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000959' ) $data_identifier = 'HOM05D000959' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 5, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 5, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 10, 'mbi' => (int) 3, 'mco' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 2, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 3, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 11, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399750' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000959', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '622', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p07100' => 'bna', 'A03p11720' => 'bna', 'A05p08300' => 'bna', 'A05p13380' => 'bna', 'A09p54130' => 'bna', 'A10p16690' => 'bna', 'A10p16700' => 'bna', 'A10p33390' => 'bna', 'Aa31LG10G16020' => 'aar', 'Aa31LG1G11810' => 'aar', 'Aa31LG1G11830' => 'aar', 'Aa31LG1G22510' => 'aar', 'Aa31LG5G4890' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5793' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2310' => 'aag', 'Actinidia08499' => 'ach', 'Actinidia11262' => 'ach', 'Actinidia23926' => 'ach', 'Actinidia34420' => 'ach', 'Actinidia36970' => 'ach', 'Ah.02g111220' => 'amhyb', 'Ah.15g097750' => 'amhyb', 'AL4G27500' => 'aly', 'AL6G11470' => 'aly', 'AL8G35950' => 'aly', 'AL8G35960' => 'aly', 'AL8G35970' => 'aly', 'Aqoxy1G00912' => 'aox', 'Aqoxy2G02253' => 'aox', 'Aqoxy2G02411' => 'aox', 'Aqoxy5G00485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BZ66YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K8ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM4FUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6BF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HFV7XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25JBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0YNNV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MAKK6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P70IT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP2Z6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V61LZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YWP64R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3S9AI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7PGHH' => 'arhy', 'AT2G32150' => 'ath', 'AT3G62040' => 'ath', 'AT5G02230' => 'ath', 'AT5G59480' => 'ath', 'AT5G59490' => 'ath', 'ATR0332G060' => 'atr', 'ATR0559G190' => 'atr', 'ATR0693G294' => 'atr', 'Atru.chr3.3975' => 'acertr', 'Atru.chr3.3976' => 'acertr', 'Atru.chr3.3977' => 'acertr', 'Atru.chr4.2498' => 'acertr', 'Atru.chr5.838' => 'acertr', 'Atru.chr8.1990' => 'acertr', 'Atru.chr8.1991' => 'acertr', 'Atru.chr8.1992' => 'acertr', 'AUR62001759' => 'cqu', 'AUR62009545' => 'cqu', 'AUR62010474' => 'cqu', 'AUR62025820' => 'cqu', 'AUR62030422' => 'cqu', 'AUR62033605' => 'cqu', 'AUR62038615' => 'cqu', 'AUR62041347' => 'cqu', 'BcaB01g04574' => 'bca', 'BcaB02g09263' => 'bca', 'BcaB02g10453' => 'bca', 'BcaB05g22513' => 'bca', 'BcaB08g36253' => 'bca', 'BcaB08g36254' => 'bca', 'BcaC01g06519' => 'bca', 'BcaC02g11889' => 'bca', 'BcaC03g14010' => 'bca', 'BcaC03g18439' => 'bca', 'BcaC04g19765' => 'bca', 'BcaC09g48432' => 'bca', 'BcaNung07302' => 'bca', 'BolC2t06040H' => 'bol', 'BolC2t07346H' => 'bol', 'BolC3t13817H' => 'bol', 'BolC4t22625H' => 'bol', 'BolC4t23297H' => 'bol', 'BolC8t51278H' => 'bol', 'BolC9t58050H' => 'bol', 'BolC9t58051H' => 'bol', 'BolC9t60163H' => 'bol', 'BraA02t04712Z' => 'bra', 'BraA02t05791Z' => 'bra', 'BraA03t10483Z' => 'bra', 'BraA05t19795Z' => 'bra', 'BraA05t20276Z' => 'bra', 'BraA09t40827Z' => 'bra', 'BraA10t43750Z' => 'bra', 'BraA10t43751Z' => 'bra', 'BraA10t45370Z' => 'bra', 'C02p00400' => 'bna', 'C02p12460' => 'bna', 'C03p13680' => 'bna', 'C04p10270' => 'bna', 'C04p17500' => 'bna', 'C08p37010' => 'bna', 'C09p51880' => 'bna', 'C09p51890' => 'bna', 'C09p74300' => 'bna', 'CAN.G179.26' => 'can', 'CAN.G3384.1' => 'can', 'CAN.G394.68' => 'can', 'CAN.G907.13' => 'can', 'CANSAT11G0012' => 'cansat', 'CANSAT25G1586' => 'cansat', 'CANSAT35G0735' => 'cansat', 'CANSAT54G0556' => 'cansat', 'CANSAT64G0356' => 'cansat', 'CANSAT78G2042' => 'cansat', 'CARHR125920' => 'chi', 'CARHR131910' => 'chi', 'CARHR172390' => 'chi', 'CARHR211140' => 'chi', 'CARHR285850' => 'chi', 'CARHR285860' => 'chi', 'Carub.0004s1347' => 'cru', 'Carub.0004s1960' => 'cru', 'Carub.0005s2880' => 'cru', 'Carub.0006s0107' => 'cru', 'Carub.0008s2015' => 'cru', 'Carub.0008s2016' => 'cru', 'Carub.0008s2017' => 'cru', 'Ca_01315_v3' => 'car', 'Ca_05063_v3' => 'car', 'Ca_10231_v3' => 'car', 'Ca_10913_v3' => 'car', 'Ca_19156_v3' => 'car', 'Ca_23644_v3' => 'car', 'Ca_26735_v3' => 'car', 'Cc01_g13130' => 'ccan', 'Cc02_g21690' => 'ccan', 'Cc03_g03600' => 'ccan', 'Cc06_g02510' => 'ccan', 'CDE02G1265' => 'cde', 'CDE05G0415' => 'cde', 'CDE08G1082' => 'cde', 'Cfa005780' => 'cfa', 'Cfa011522' => 'cfa', 'Cfa011523' => 'cfa', 'Cfa015627' => 'cfa', 'Cfa017359' => 'cfa', 'Ciclev10005687m.g' => 'ccl', 'Ciclev10012173m.g' => 'ccl', 'Ciclev10021621m.g' => 'ccl', 'Ciclev10028968m.g' => 'ccl', 'Ciclev10029907m.g' => 'ccl', 'CiPaw.01G164800' => 'cil', 'CiPaw.07G083700' => 'cil', 'CiPaw.07G127000' => 'cil', 'CiPaw.07G136900' => 'cil', 'CiPaw.08G081700' => 'cil', 'CiPaw.09G194600' => 'cil', 'CiPaw.10G146500' => 'cil', 'CiPaw.13G091500' => 'cil', 'CiPaw.13G091600' => 'cil', 'ClCG00G003390' => 'cla', 'ClCG01G007220' => 'cla', 'ClCG03G001370' => 'cla', 'ClCG04G008100' => 'cla', 'ClCG06G006110' => 'cla', 'ClCG06G006130' => 'cla', 'ClCG10G021210' => 'cla', 'COL.COLO4_07648' => 'col', 'COL.COLO4_07650' => 'col', 'COL.COLO4_07651' => 'col', 'COL.COLO4_14780' => 'col', 'COL.COLO4_18546' => 'col', 'COL.COLO4_18547' => 'col', 'COL.COLO4_23103' => 'col', 'COL.COLO4_30419' => 'col', 'COL.COLO4_34232' => 'col', 'Cpa.g.sc169.20' => 'cpa', 'Cpa.g.sc57.45' => 'cpa', 'Cpa.g.sc58.124' => 'cpa', 'Cpa.g.sc58.125' => 'cpa', 'Cpa.g.sc81.118' => 'cpa', 'Cpa.g.sc81.119' => 'cpa', 'Cre12.g524700' => 'cre', 'CsaV3_1G034430' => 'csa', 'CsaV3_1G034440' => 'csa', 'CsaV3_1G034450' => 'csa', 'CsaV3_3G034830' => 'csa', 'CsaV3_4G025090' => 'csa', 'CsaV3_5G018660' => 'csa', 'CsaV3_6G038160' => 'csa', 'CSS0003447' => 'camsi', 'CSS0017840' => 'camsi', 'CSS0019260' => 'camsi', 'CSS0040375' => 'camsi', 'CSS0042533' => 'camsi', 'DCAR_005960' => 'dca', 'DCAR_012104' => 'dca', 'DCAR_012105' => 'dca', 'DCAR_012293' => 'dca', 'DCAR_015632' => 'dca', 'DCAR_024602' => 'dca', 'DCAR_028752' => 'dca', 'Dinv06261' => 'din', 'Dinv13982' => 'din', 'Dinv17029' => 'din', 'Dinv18463' => 'din', 'Dinv33181' => 'din', 'Dinv35585' => 'din', 'Dinv37161' => 'din', 'Dinv42977' => 'din', 'Dinv43122' => 'din', 'Dinv44517' => 'din', 'Duzib093G0256' => 'dzi', 'Duzib106G1254' => 'dzi', 'Duzib128G1789' => 'dzi', 'Duzib133G0633' => 'dzi', 'Duzib138G0510' => 'dzi', 'Duzib150G1084' => 'dzi', 'Duzib168G0488' => 'dzi', 'Duzib168G1523' => 'dzi', 'Duzib170G0133' => 'dzi', 'ECA234G1433' => 'eca', 'ECA236G1432' => 'eca', 'ECA236G2256' => 'eca', 'ECA236G2365' => 'eca', 'ECA236G4830' => 'eca', 'ECA248G1505' => 'eca', 'EL10Ac3g06431' => 'bvu', 'EL10Ac5g12577' => 'bvu', 'EL10Ac6g13533' => 'bvu', 'EL10Ac7g16045' => 'bvu', 'Eucgr.A01281' => 'egr', 'Eucgr.B02326' => 'egr', 'Eucgr.H03532' => 'egr', 'Eucgr.K00553' => 'egr', 'Eucgr.K03116' => 'egr', 'FAN02G3963' => 'fan', 'FAN05G0438' => 'fan', 'FAN09G2434' => 'fan', 'FAN12G3984' => 'fan', 'FAN14G0798' => 'fan', 'FAN17G0652' => 'fan', 'FAN19G1988' => 'fan', 'FAN22G0632' => 'fan', 'FAN23G0387' => 'fan', 'FAN26G1323' => 'fan', 'FAN28G0666' => 'fan', 'FvH4_1g26080' => 'fve', 'FvH4_3g36780' => 'fve', 'FvH4_4g15270' => 'fve', 'FvH4_6g13490' => 'fve', 'Glyma.01G098700' => 'gma', 'Glyma.03G065900' => 'gma', 'Glyma.03G073754' => 'gma', 'Glyma.03G073758' => 'gma', 'Glyma.03G083200' => 'gma', 'Glyma.03G225500' => 'gma', 'Glyma.05G037766' => 'gma', 'Glyma.07G133500' => 'gma', 'Glyma.10G139400' => 'gma', 'Glyma.10G248900' => 'gma', 'Glyma.11G137800' => 'gma', 'Glyma.12G061300' => 'gma', 'Glyma.13G337900' => 'gma', 'Glyma.15G036600' => 'gma', 'Glyma.18G182800' => 'gma', 'Glyma.19G222500' => 'gma', 'Glyma.20G144800' => 'gma', 'Gohir.A01G222000' => 'ghi', 'Gohir.A03G044000' => 'ghi', 'Gohir.A03G044100' => 'ghi', 'Gohir.A04G083100' => 'ghi', 'Gohir.A07G127200' => 'ghi', 'Gohir.A07G132400' => 'ghi', 'Gohir.A08G000700' => 'ghi', 'Gohir.A11G327300' => 'ghi', 'Gohir.D01G211500' => 'ghi', 'Gohir.D03G123400' => 'ghi', 'Gohir.D03G123500' => 'ghi', 'Gohir.D04G121800' => 'ghi', 'Gohir.D07G131500' => 'ghi', 'Gohir.D07G136600' => 'ghi', 'Gohir.D08G011600' => 'ghi', 'Gohir.D11G346200' => 'ghi', 'Gorai.001G142800' => 'gra', 'Gorai.001G148700' => 'gra', 'Gorai.002G257300' => 'gra', 'Gorai.003G130000' => 'gra', 'Gorai.003G130100' => 'gra', 'Gorai.004G005300' => 'gra', 'Gorai.007G376500' => 'gra', 'Gorai.012G104700' => 'gra', 'GSVIVG01017946001' => 'vvi', 'GSVIVG01024928001' => 'vvi', 'GSVIVG01028227001' => 'vvi', 'GSVIVG01034151001' => 'vvi', 'HanXRQChr05g0135031' => 'han', 'HanXRQChr05g0135041' => 'han', 'HanXRQChr05g0140021' => 'han', 'HanXRQChr06g0178981' => 'han', 'HanXRQChr07g0188251' => 'han', 'HanXRQChr08g0235311' => 'han', 'HanXRQChr09g0271011' => 'han', 'HanXRQChr10g0293321' => 'han', 'HanXRQChr13g0388171' => 'han', 'Haze_00916' => 'cav', 'Haze_05063' => 'cav', 'Haze_20814' => 'cav', 'Haze_24128' => 'cav', 'Hma1.2p1_0745F.1_g212010' => 'hma', 'Hma1.2p1_0757F.1_g213260' => 'hma', 'Hma1.2p1_0936F.1_g238840' => 'hma', 'Hma1.2p1_1735F.1_g299890' => 'hma', 'Hma1.2p1_1861F.1_g305685' => 'hma', 'HPP92_003397' => 'vpl', 'HPP92_012597' => 'vpl', 'HPP92_015520' => 'vpl', 'HPP92_015539' => 'vpl', 'HPP92_020373' => 'vpl', 'Hund04938' => 'sun', 'Hund10677' => 'sun', 'Hund11033' => 'sun', 'Hund12155' => 'sun', 'Lalb_Chr01g0022551' => 'lal', 'Lalb_Chr03g0042341' => 'lal', 'Lalb_Chr07g0192931' => 'lal', 'Lalb_Chr12g0209551' => 'lal', 'Lalb_Chr19g0125251' => 'lal', 'Lalb_Chr19g0137891' => 'lal', 'Lalb_Chr21g0304641' => 'lal', 'Lalb_Chr21g0309881' => 'lal', 'Lj1A5T12' => 'lonja', 'Lj1C148G10' => 'lonja', 'Lj2A93T83' => 'lonja', 'Lj3A738G68' => 'lonja', 'Lj3C966T1' => 'lonja', 'Lj3g0018958' => 'lja', 'Lj3g0021831' => 'lja', 'Lj3g0025443' => 'lja', 'Lj4g0026809' => 'lja', 'Lj5g0012558' => 'lja', 'Lj5g0021586' => 'lja', 'Lsat_1_v5_gn_5_156840' => 'lsa', 'Lsat_1_v5_gn_8_73460' => 'lsa', 'Lsat_1_v5_gn_8_73481' => 'lsa', 'Lsat_1_v5_gn_9_31601' => 'lsa', 'Lsat_1_v5_gn_9_77320' => 'lsa', 'Manes.01G171300' => 'mes', 'Manes.01G171400' => 'mes', 'Manes.01G236100' => 'mes', 'Manes.02G130500' => 'mes', 'Manes.02G130600' => 'mes', 'Manes.03G180200' => 'mes', 'Manes.05G007000' => 'mes', 'Manes.08G084400' => 'mes', 'Manes.09G092600' => 'mes', 'Manes.15G027900' => 'mes', 'MBI04_g40948_MAGBIO' => 'mbi', 'MBI14_g12123_MAGBIO' => 'mbi', 'MBI18_g28915_MAGBIO' => 'mbi', 'MCO09G053' => 'mco', 'MCO11G782' => 'mco', 'MCO15G215' => 'mco', 'MD03G1088500' => 'mdo', 'MD03G1088600' => 'mdo', 'MD04G1130800' => 'mdo', 'MD09G1291700' => 'mdo', 'MD11G1097500' => 'mdo', 'MD11G1097600' => 'mdo', 'MD12G1143900' => 'mdo', 'MD13G1191400' => 'mdo', 'MD16G1191500' => 'mdo', 'Medtr1g085570' => 'mtr', 'Medtr1g104610' => 'mtr', 'Medtr2g097520' => 'mtr', 'Medtr4g021800' => 'mtr', 'Medtr4g021825' => 'mtr', 'Medtr4g064270' => 'mtr', 'Medtr4g064380' => 'mtr', 'Medtr7g062150' => 'mtr', 'MELO3C003138.2' => 'cme', 'MELO3C005187.2' => 'cme', 'MELO3C009252.2' => 'cme', 'MELO3C014481.2' => 'cme', 'MELO3C020616.2' => 'cme', 'MELO3C020617.2' => 'cme', 'MELO3C020618.2' => 'cme', 'Migut.G00328' => 'egut', 'Migut.J00320' => 'egut', 'Migut.L01000' => 'egut', 'Migut.L01953' => 'egut', 'MSTRG.10253' => 'ama', 'MSTRG.19077' => 'ama', 'MSTRG.26780' => 'ama', 'MSTRG.4023' => 'ama', 'MSTRG.5655' => 'ama', 'MSTRG.9992' => 'ama', 'Nitab4.5_0000043g0310' => 'nta', 'Nitab4.5_0000463g0080' => 'nta', 'Nitab4.5_0000705g0170' => 'nta', 'Nitab4.5_0001326g0060' => 'nta', 'Nitab4.5_0001628g0030' => 'nta', 'Nitab4.5_0002103g0110' => 'nta', 'Nitab4.5_0002946g0030' => 'nta', 'Nitab4.5_0004639g0030' => 'nta', 'Nn2g11149' => 'nnu', 'Nn2g13389' => 'nnu', 'Nn4g25326' => 'nnu', 'Nn4g26290' => 'nnu', 'Nn5g29865' => 'nnu', 'Oeu004163.1' => 'oeu', 'Oeu006901.1' => 'oeu', 'Oeu010096.1' => 'oeu', 'Oeu024340.1' => 'oeu', 'Oeu048369.1' => 'oeu', 'Os01g0973000' => 'osa', 'Os03g0273800' => 'osa', 'Os03g0701200' => 'osa', 'Os03g0834050' => 'osa', 'Os07g0634400' => 'osa', 'Peaxi162Scf00092g01414' => 'pax', 'Peaxi162Scf00165g00818' => 'pax', 'Peaxi162Scf00309g00516' => 'pax', 'Peaxi162Scf00774g00218' => 'pax', 'PGR004G1824' => 'pgr', 'PGR004G2606' => 'pgr', 'PGR031G2716' => 'pgr', 'PGR102G2460' => 'pgr', 'PGR142G2599' => 'pgr', 'PGSC0003DMG400000843' => 'stu', 'PGSC0003DMG400008829' => 'stu', 'PGSC0003DMG400030418' => 'stu', 'PGSC0003DMG400031834' => 'stu', 'PGSC0003DMG401028300' => 'stu', 'PGSC0003DMG402028300' => 'stu', 'Phvul.001G219300' => 'pvu', 'Phvul.007G056000' => 'pvu', 'Phvul.007G208000' => 'pvu', 'Phvul.008G119500' => 'pvu', 'Phvul.010G011200' => 'pvu', 'Phvul.010G014800' => 'pvu', 'Phvul.011G062900' => 'pvu', 'Phvul.L007043' => 'pvu', 'Potri.001G242300' => 'ptr', 'Potri.002G185300' => 'ptr', 'Potri.006G086900' => 'ptr', 'Potri.008G151700' => 'ptr', 'Potri.009G033500' => 'ptr', 'Potri.010G089300' => 'ptr', 'Potri.014G110800' => 'ptr', 'Pp3c27_8130' => 'ppa', 'Pp3c6_27410' => 'ppa', 'PRCOL_00001659' => 'pco', 'PRCOL_00001927' => 'pco', 'PRCOL_00003649' => 'pco', 'Prupe.1G011600' => 'ppe', 'Prupe.3G000800' => 'ppe', 'Prupe.3G001100' => 'ppe', 'Prupe.6G072700' => 'ppe', 'Prupe.6G072800' => 'ppe', 'Prupe.6G257300' => 'ppe', 'Prupe.8G033000' => 'ppe', 'Psat0s2633g0080' => 'psa', 'Psat0s3396g0080' => 'psa', 'Psat0s3396g0200' => 'psa', 'Psat3g139080' => 'psa', 'Psat5g285080' => 'psa', 'Psat6g157760' => 'psa', 'Psat6g208440' => 'psa', 'Psat7g215320' => 'psa', 'Psat7g215400' => 'psa', 'Psat7g235600' => 'psa', 'Psat7g235760' => 'psa', 'PSO063G4603' => 'pso', 'PSO210G0182' => 'pso', 'PSO210G0196' => 'pso', 'PSO339G0394' => 'pso', 'PSO339G4127' => 'pso', 'PSO513G0064' => 'pso', 'PSO761G0079' => 'pso', 'QL01p031003' => 'qlo', 'QL01p031078' => 'qlo', 'QL06p003004' => 'qlo', 'QL07p048731' => 'qlo', 'QL09p037427' => 'qlo', 'RcHm_v2.0_Chr3g0466361' => 'rch', 'RcHm_v2.0_Chr3g0485571' => 'rch', 'RcHm_v2.0_Chr4g0416551' => 'rch', 'RcHm_v2.0_Chr5g0065831' => 'rch', 'Rhsim01G0230500' => 'rsi', 'Rhsim05G0194000' => 'rsi', 'Rhsim08G0250400' => 'rsi', 'Sabra02G0131000' => 'sbr', 'Sabra06G0066300' => 'sbr', 'Sabra08G0115500' => 'sbr', 'Sabra09G0023900' => 'sbr', 'Sabra10G0054000' => 'sbr', 'Sabra14G0081500' => 'sbr', 'Sabra16G0147100' => 'sbr', 'SalBow2G2957' => 'sbo', 'SalBow4G3320' => 'sbo', 'SalBow8G1894' => 'sbo', 'Sc07g0007950' => 'sci', 'Sc12g0001360' => 'sci', 'Sc13g0004330' => 'sci', 'Sc20g0005010' => 'sci', 'Sed0000361' => 'sed', 'Sed0001706' => 'sed', 'Sed0002422' => 'sed', 'Sed0004029' => 'sed', 'Sed0004602' => 'sed', 'Sed0004943' => 'sed', 'Sed0008646' => 'sed', 'Sed0023313' => 'sed', 'Sed0024843' => 'sed', 'SEGI_00081' => 'sgi', 'SEGI_00947' => 'sgi', 'SEGI_04046' => 'sgi', 'SEGI_06880' => 'sgi', 'SEGI_09736' => 'sgi', 'SEGI_12741' => 'sgi', 'SEGI_14530' => 'sgi', 'SEGI_20705' => 'sgi', 'SEGI_26088' => 'sgi', 'SEGI_28323' => 'sgi', 'SEGI_33343' => 'sgi', 'SGA_v2.0_scaffold126G33775' => 'sas', 'SGA_v2.0_scaffold2G01337' => 'sas', 'SGA_v2.0_scaffold38G15006' => 'sas', 'SGA_v2.0_scaffold39G15264' => 'sas', 'SGA_v2.0_scaffold453G51880' => 'sas', 'SHI12696' => 'shi', 'SMO367G1096' => 'smo', 'Solyc01g068630.3' => 'sly', 'Solyc05g011880.3' => 'sly', 'Solyc06g076300.3' => 'sly', 'Solyc09g010940.4' => 'sly', 'Solyc09g075890.3' => 'sly', 'Sopen01g030560' => 'spe', 'Sopen05g006630' => 'spe', 'Sopen06g032720' => 'spe', 'Sopen09g005660' => 'spe', 'Sopen09g030690' => 'spe', 'Sp4g14540' => 'spa', 'Sp4g20030' => 'spa', 'Sp5g01320' => 'spa', 'Sp6g21170' => 'spa', 'Sp6g21180' => 'spa', 'Sp6g21190' => 'spa', 'Sp6g40220' => 'spa', 'TAR362G0122' => 'tar', 'TAR362G1338' => 'tar', 'TAR369G0590' => 'tar', 'TAR371G0824' => 'tar', 'TAR622G1429' => 'tar', 'TAR623G0734' => 'tar', 'TAR625G0441' => 'tar', 'TAR629G0976' => 'tar', 'TAR633G1195' => 'tar', 'TAR636G2660' => 'tar', 'THA.LOC104799440' => 'tha', 'THA.LOC104800966' => 'tha', 'THA.LOC104806559' => 'tha', 'THA.LOC104810765' => 'tha', 'THA.LOC104816266' => 'tha', 'THA.LOC104817419' => 'tha', 'THA.LOC104827021' => 'tha', 'Thecc.01G327400' => 'tca', 'Thecc.04G229200' => 'tca', 'Thecc.05G037400' => 'tca', 'Thecc.09G318600' => 'tca', 'Thecc.09G318700' => 'tca', 'Thhalv10006238m.g' => 'esa', 'Thhalv10014321m.g' => 'esa', 'Thhalv10014335m.g' => 'esa', 'Thhalv10015826m.g' => 'esa', 'Thhalv10017107m.g' => 'esa', 'Thhalv10017180m.g' => 'esa', 'Thhalv10029339m.g' => 'esa', 'TPR.G1699' => 'tpr', 'TPR.G23609' => 'tpr', 'TPR.G3081' => 'tpr', 'TPR.G40397' => 'tpr', 'TPR.G5522' => 'tpr', 'TPR.G5618' => 'tpr', 'TPR.G5626' => 'tpr', 'TWI09G1632' => 'twi', 'TWI23G1230' => 'twi', 'TWI53G1064' => 'twi', 'TWI59G0751' => 'twi', 'TWI74G0947' => 'twi', 'TWI77G0337' => 'twi', 'TWI79G1254' => 'twi', 'unitig_0.g2341' => 'ugi', 'unitig_26.g10006' => 'ugi', 'unitig_26.g10008' => 'ugi', 'unitig_26.g9192' => 'ugi', 'vmacro14547' => 'vma', 'vmacro15333' => 'vma', 'vmacro18743' => 'vma', 'vmacro20166' => 'vma', 'VMungo0331G0523' => 'vmu', 'VMungo0331G1202' => 'vmu', 'VMungo0720G1228' => 'vmu', 'VMungo0720G1514' => 'vmu', 'VMungo1080G0169' => 'vmu', 'VMungo1127G1475' => 'vmu', 'VMungo1383G1208' => 'vmu', 'VMungo1383G1698' => 'vmu', 'Zm00001eb012270' => 'zma', 'Zm00001eb054100' => 'zma', 'Zm00001eb063350' => 'zma', 'Zm00001eb328560' => 'zma', 'Zm00001eb342820' => 'zma', 'Zm00001eb362210' => 'zma', 'Zm00001eb397730' => 'zma', 'Zm00001eb399750' => 'zma' ), 'gf_id' => 'HOM05D000959', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000959' ), 'data_identifier' => 'HOM05D000959', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000959', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '622', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p07100' => 'bna', 'A03p11720' => 'bna', 'A05p08300' => 'bna', 'A05p13380' => 'bna', 'A09p54130' => 'bna', 'A10p16690' => 'bna', 'A10p16700' => 'bna', 'A10p33390' => 'bna', 'Aa31LG10G16020' => 'aar', 'Aa31LG1G11810' => 'aar', 'Aa31LG1G11830' => 'aar', 'Aa31LG1G22510' => 'aar', 'Aa31LG5G4890' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5793' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2310' => 'aag', 'Actinidia08499' => 'ach', 'Actinidia11262' => 'ach', 'Actinidia23926' => 'ach', 'Actinidia34420' => 'ach', 'Actinidia36970' => 'ach', 'Ah.02g111220' => 'amhyb', 'Ah.15g097750' => 'amhyb', 'AL4G27500' => 'aly', 'AL6G11470' => 'aly', 'AL8G35950' => 'aly', 'AL8G35960' => 'aly', 'AL8G35970' => 'aly', 'Aqoxy1G00912' => 'aox', 'Aqoxy2G02253' => 'aox', 'Aqoxy2G02411' => 'aox', 'Aqoxy5G00485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BZ66YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K8ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM4FUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6BF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HFV7XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25JBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0YNNV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MAKK6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P70IT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP2Z6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V61LZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YWP64R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3S9AI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7PGHH' => 'arhy', 'AT2G32150' => 'ath', 'AT3G62040' => 'ath', 'AT5G02230' => 'ath', 'AT5G59480' => 'ath', 'AT5G59490' => 'ath', 'ATR0332G060' => 'atr', 'ATR0559G190' => 'atr', 'ATR0693G294' => 'atr', 'Atru.chr3.3975' => 'acertr', 'Atru.chr3.3976' => 'acertr', 'Atru.chr3.3977' => 'acertr', 'Atru.chr4.2498' => 'acertr', 'Atru.chr5.838' => 'acertr', 'Atru.chr8.1990' => 'acertr', 'Atru.chr8.1991' => 'acertr', 'Atru.chr8.1992' => 'acertr', 'AUR62001759' => 'cqu', 'AUR62009545' => 'cqu', 'AUR62010474' => 'cqu', 'AUR62025820' => 'cqu', 'AUR62030422' => 'cqu', 'AUR62033605' => 'cqu', 'AUR62038615' => 'cqu', 'AUR62041347' => 'cqu', 'BcaB01g04574' => 'bca', 'BcaB02g09263' => 'bca', 'BcaB02g10453' => 'bca', 'BcaB05g22513' => 'bca', 'BcaB08g36253' => 'bca', 'BcaB08g36254' => 'bca', 'BcaC01g06519' => 'bca', 'BcaC02g11889' => 'bca', 'BcaC03g14010' => 'bca', 'BcaC03g18439' => 'bca', 'BcaC04g19765' => 'bca', 'BcaC09g48432' => 'bca', 'BcaNung07302' => 'bca', 'BolC2t06040H' => 'bol', 'BolC2t07346H' => 'bol', 'BolC3t13817H' => 'bol', 'BolC4t22625H' => 'bol', 'BolC4t23297H' => 'bol', 'BolC8t51278H' => 'bol', 'BolC9t58050H' => 'bol', 'BolC9t58051H' => 'bol', 'BolC9t60163H' => 'bol', 'BraA02t04712Z' => 'bra', 'BraA02t05791Z' => 'bra', 'BraA03t10483Z' => 'bra', 'BraA05t19795Z' => 'bra', 'BraA05t20276Z' => 'bra', 'BraA09t40827Z' => 'bra', 'BraA10t43750Z' => 'bra', 'BraA10t43751Z' => 'bra', 'BraA10t45370Z' => 'bra', 'C02p00400' => 'bna', 'C02p12460' => 'bna', 'C03p13680' => 'bna', 'C04p10270' => 'bna', 'C04p17500' => 'bna', 'C08p37010' => 'bna', 'C09p51880' => 'bna', 'C09p51890' => 'bna', 'C09p74300' => 'bna', 'CAN.G179.26' => 'can', 'CAN.G3384.1' => 'can', 'CAN.G394.68' => 'can', 'CAN.G907.13' => 'can', 'CANSAT11G0012' => 'cansat', 'CANSAT25G1586' => 'cansat', 'CANSAT35G0735' => 'cansat', 'CANSAT54G0556' => 'cansat', 'CANSAT64G0356' => 'cansat', 'CANSAT78G2042' => 'cansat', 'CARHR125920' => 'chi', 'CARHR131910' => 'chi', 'CARHR172390' => 'chi', 'CARHR211140' => 'chi', 'CARHR285850' => 'chi', 'CARHR285860' => 'chi', 'Carub.0004s1347' => 'cru', 'Carub.0004s1960' => 'cru', 'Carub.0005s2880' => 'cru', 'Carub.0006s0107' => 'cru', 'Carub.0008s2015' => 'cru', 'Carub.0008s2016' => 'cru', 'Carub.0008s2017' => 'cru', 'Ca_01315_v3' => 'car', 'Ca_05063_v3' => 'car', 'Ca_10231_v3' => 'car', 'Ca_10913_v3' => 'car', 'Ca_19156_v3' => 'car', 'Ca_23644_v3' => 'car', 'Ca_26735_v3' => 'car', 'Cc01_g13130' => 'ccan', 'Cc02_g21690' => 'ccan', 'Cc03_g03600' => 'ccan', 'Cc06_g02510' => 'ccan', 'CDE02G1265' => 'cde', 'CDE05G0415' => 'cde', 'CDE08G1082' => 'cde', 'Cfa005780' => 'cfa', 'Cfa011522' => 'cfa', 'Cfa011523' => 'cfa', 'Cfa015627' => 'cfa', 'Cfa017359' => 'cfa', 'Ciclev10005687m.g' => 'ccl', 'Ciclev10012173m.g' => 'ccl', 'Ciclev10021621m.g' => 'ccl', 'Ciclev10028968m.g' => 'ccl', 'Ciclev10029907m.g' => 'ccl', 'CiPaw.01G164800' => 'cil', 'CiPaw.07G083700' => 'cil', 'CiPaw.07G127000' => 'cil', 'CiPaw.07G136900' => 'cil', 'CiPaw.08G081700' => 'cil', 'CiPaw.09G194600' => 'cil', 'CiPaw.10G146500' => 'cil', 'CiPaw.13G091500' => 'cil', 'CiPaw.13G091600' => 'cil', 'ClCG00G003390' => 'cla', 'ClCG01G007220' => 'cla', 'ClCG03G001370' => 'cla', 'ClCG04G008100' => 'cla', 'ClCG06G006110' => 'cla', 'ClCG06G006130' => 'cla', 'ClCG10G021210' => 'cla', 'COL.COLO4_07648' => 'col', 'COL.COLO4_07650' => 'col', 'COL.COLO4_07651' => 'col', 'COL.COLO4_14780' => 'col', 'COL.COLO4_18546' => 'col', 'COL.COLO4_18547' => 'col', 'COL.COLO4_23103' => 'col', 'COL.COLO4_30419' => 'col', 'COL.COLO4_34232' => 'col', 'Cpa.g.sc169.20' => 'cpa', 'Cpa.g.sc57.45' => 'cpa', 'Cpa.g.sc58.124' => 'cpa', 'Cpa.g.sc58.125' => 'cpa', 'Cpa.g.sc81.118' => 'cpa', 'Cpa.g.sc81.119' => 'cpa', 'Cre12.g524700' => 'cre', 'CsaV3_1G034430' => 'csa', 'CsaV3_1G034440' => 'csa', 'CsaV3_1G034450' => 'csa', 'CsaV3_3G034830' => 'csa', 'CsaV3_4G025090' => 'csa', 'CsaV3_5G018660' => 'csa', 'CsaV3_6G038160' => 'csa', 'CSS0003447' => 'camsi', 'CSS0017840' => 'camsi', 'CSS0019260' => 'camsi', 'CSS0040375' => 'camsi', 'CSS0042533' => 'camsi', 'DCAR_005960' => 'dca', 'DCAR_012104' => 'dca', 'DCAR_012105' => 'dca', 'DCAR_012293' => 'dca', 'DCAR_015632' => 'dca', 'DCAR_024602' => 'dca', 'DCAR_028752' => 'dca', 'Dinv06261' => 'din', 'Dinv13982' => 'din', 'Dinv17029' => 'din', 'Dinv18463' => 'din', 'Dinv33181' => 'din', 'Dinv35585' => 'din', 'Dinv37161' => 'din', 'Dinv42977' => 'din', 'Dinv43122' => 'din', 'Dinv44517' => 'din', 'Duzib093G0256' => 'dzi', 'Duzib106G1254' => 'dzi', 'Duzib128G1789' => 'dzi', 'Duzib133G0633' => 'dzi', 'Duzib138G0510' => 'dzi', 'Duzib150G1084' => 'dzi', 'Duzib168G0488' => 'dzi', 'Duzib168G1523' => 'dzi', 'Duzib170G0133' => 'dzi', 'ECA234G1433' => 'eca', 'ECA236G1432' => 'eca', 'ECA236G2256' => 'eca', 'ECA236G2365' => 'eca', 'ECA236G4830' => 'eca', 'ECA248G1505' => 'eca', 'EL10Ac3g06431' => 'bvu', 'EL10Ac5g12577' => 'bvu', 'EL10Ac6g13533' => 'bvu', 'EL10Ac7g16045' => 'bvu', 'Eucgr.A01281' => 'egr', 'Eucgr.B02326' => 'egr', 'Eucgr.H03532' => 'egr', 'Eucgr.K00553' => 'egr', 'Eucgr.K03116' => 'egr', 'FAN02G3963' => 'fan', 'FAN05G0438' => 'fan', 'FAN09G2434' => 'fan', 'FAN12G3984' => 'fan', 'FAN14G0798' => 'fan', 'FAN17G0652' => 'fan', 'FAN19G1988' => 'fan', 'FAN22G0632' => 'fan', 'FAN23G0387' => 'fan', 'FAN26G1323' => 'fan', 'FAN28G0666' => 'fan', 'FvH4_1g26080' => 'fve', 'FvH4_3g36780' => 'fve', 'FvH4_4g15270' => 'fve', 'FvH4_6g13490' => 'fve', 'Glyma.01G098700' => 'gma', 'Glyma.03G065900' => 'gma', 'Glyma.03G073754' => 'gma', 'Glyma.03G073758' => 'gma', 'Glyma.03G083200' => 'gma', 'Glyma.03G225500' => 'gma', 'Glyma.05G037766' => 'gma', 'Glyma.07G133500' => 'gma', 'Glyma.10G139400' => 'gma', 'Glyma.10G248900' => 'gma', 'Glyma.11G137800' => 'gma', 'Glyma.12G061300' => 'gma', 'Glyma.13G337900' => 'gma', 'Glyma.15G036600' => 'gma', 'Glyma.18G182800' => 'gma', 'Glyma.19G222500' => 'gma', 'Glyma.20G144800' => 'gma', 'Gohir.A01G222000' => 'ghi', 'Gohir.A03G044000' => 'ghi', 'Gohir.A03G044100' => 'ghi', 'Gohir.A04G083100' => 'ghi', 'Gohir.A07G127200' => 'ghi', 'Gohir.A07G132400' => 'ghi', 'Gohir.A08G000700' => 'ghi', 'Gohir.A11G327300' => 'ghi', 'Gohir.D01G211500' => 'ghi', 'Gohir.D03G123400' => 'ghi', 'Gohir.D03G123500' => 'ghi', 'Gohir.D04G121800' => 'ghi', 'Gohir.D07G131500' => 'ghi', 'Gohir.D07G136600' => 'ghi', 'Gohir.D08G011600' => 'ghi', 'Gohir.D11G346200' => 'ghi', 'Gorai.001G142800' => 'gra', 'Gorai.001G148700' => 'gra', 'Gorai.002G257300' => 'gra', 'Gorai.003G130000' => 'gra', 'Gorai.003G130100' => 'gra', 'Gorai.004G005300' => 'gra', 'Gorai.007G376500' => 'gra', 'Gorai.012G104700' => 'gra', 'GSVIVG01017946001' => 'vvi', 'GSVIVG01024928001' => 'vvi', 'GSVIVG01028227001' => 'vvi', 'GSVIVG01034151001' => 'vvi', 'HanXRQChr05g0135031' => 'han', 'HanXRQChr05g0135041' => 'han', 'HanXRQChr05g0140021' => 'han', 'HanXRQChr06g0178981' => 'han', 'HanXRQChr07g0188251' => 'han', 'HanXRQChr08g0235311' => 'han', 'HanXRQChr09g0271011' => 'han', 'HanXRQChr10g0293321' => 'han', 'HanXRQChr13g0388171' => 'han', 'Haze_00916' => 'cav', 'Haze_05063' => 'cav', 'Haze_20814' => 'cav', 'Haze_24128' => 'cav', 'Hma1.2p1_0745F.1_g212010' => 'hma', 'Hma1.2p1_0757F.1_g213260' => 'hma', 'Hma1.2p1_0936F.1_g238840' => 'hma', 'Hma1.2p1_1735F.1_g299890' => 'hma', 'Hma1.2p1_1861F.1_g305685' => 'hma', 'HPP92_003397' => 'vpl', 'HPP92_012597' => 'vpl', 'HPP92_015520' => 'vpl', 'HPP92_015539' => 'vpl', 'HPP92_020373' => 'vpl', 'Hund04938' => 'sun', 'Hund10677' => 'sun', 'Hund11033' => 'sun', 'Hund12155' => 'sun', 'Lalb_Chr01g0022551' => 'lal', 'Lalb_Chr03g0042341' => 'lal', 'Lalb_Chr07g0192931' => 'lal', 'Lalb_Chr12g0209551' => 'lal', 'Lalb_Chr19g0125251' => 'lal', 'Lalb_Chr19g0137891' => 'lal', 'Lalb_Chr21g0304641' => 'lal', 'Lalb_Chr21g0309881' => 'lal', 'Lj1A5T12' => 'lonja', 'Lj1C148G10' => 'lonja', 'Lj2A93T83' => 'lonja', 'Lj3A738G68' => 'lonja', 'Lj3C966T1' => 'lonja', 'Lj3g0018958' => 'lja', 'Lj3g0021831' => 'lja', 'Lj3g0025443' => 'lja', 'Lj4g0026809' => 'lja', 'Lj5g0012558' => 'lja', 'Lj5g0021586' => 'lja', 'Lsat_1_v5_gn_5_156840' => 'lsa', 'Lsat_1_v5_gn_8_73460' => 'lsa', 'Lsat_1_v5_gn_8_73481' => 'lsa', 'Lsat_1_v5_gn_9_31601' => 'lsa', 'Lsat_1_v5_gn_9_77320' => 'lsa', 'Manes.01G171300' => 'mes', 'Manes.01G171400' => 'mes', 'Manes.01G236100' => 'mes', 'Manes.02G130500' => 'mes', 'Manes.02G130600' => 'mes', 'Manes.03G180200' => 'mes', 'Manes.05G007000' => 'mes', 'Manes.08G084400' => 'mes', 'Manes.09G092600' => 'mes', 'Manes.15G027900' => 'mes', 'MBI04_g40948_MAGBIO' => 'mbi', 'MBI14_g12123_MAGBIO' => 'mbi', 'MBI18_g28915_MAGBIO' => 'mbi', 'MCO09G053' => 'mco', 'MCO11G782' => 'mco', 'MCO15G215' => 'mco', 'MD03G1088500' => 'mdo', 'MD03G1088600' => 'mdo', 'MD04G1130800' => 'mdo', 'MD09G1291700' => 'mdo', 'MD11G1097500' => 'mdo', 'MD11G1097600' => 'mdo', 'MD12G1143900' => 'mdo', 'MD13G1191400' => 'mdo', 'MD16G1191500' => 'mdo', 'Medtr1g085570' => 'mtr', 'Medtr1g104610' => 'mtr', 'Medtr2g097520' => 'mtr', 'Medtr4g021800' => 'mtr', 'Medtr4g021825' => 'mtr', 'Medtr4g064270' => 'mtr', 'Medtr4g064380' => 'mtr', 'Medtr7g062150' => 'mtr', 'MELO3C003138.2' => 'cme', 'MELO3C005187.2' => 'cme', 'MELO3C009252.2' => 'cme', 'MELO3C014481.2' => 'cme', 'MELO3C020616.2' => 'cme', 'MELO3C020617.2' => 'cme', 'MELO3C020618.2' => 'cme', 'Migut.G00328' => 'egut', 'Migut.J00320' => 'egut', 'Migut.L01000' => 'egut', 'Migut.L01953' => 'egut', 'MSTRG.10253' => 'ama', 'MSTRG.19077' => 'ama', 'MSTRG.26780' => 'ama', 'MSTRG.4023' => 'ama', 'MSTRG.5655' => 'ama', 'MSTRG.9992' => 'ama', 'Nitab4.5_0000043g0310' => 'nta', 'Nitab4.5_0000463g0080' => 'nta', 'Nitab4.5_0000705g0170' => 'nta', 'Nitab4.5_0001326g0060' => 'nta', 'Nitab4.5_0001628g0030' => 'nta', 'Nitab4.5_0002103g0110' => 'nta', 'Nitab4.5_0002946g0030' => 'nta', 'Nitab4.5_0004639g0030' => 'nta', 'Nn2g11149' => 'nnu', 'Nn2g13389' => 'nnu', 'Nn4g25326' => 'nnu', 'Nn4g26290' => 'nnu', 'Nn5g29865' => 'nnu', 'Oeu004163.1' => 'oeu', 'Oeu006901.1' => 'oeu', 'Oeu010096.1' => 'oeu', 'Oeu024340.1' => 'oeu', 'Oeu048369.1' => 'oeu', 'Os01g0973000' => 'osa', 'Os03g0273800' => 'osa', 'Os03g0701200' => 'osa', 'Os03g0834050' => 'osa', 'Os07g0634400' => 'osa', 'Peaxi162Scf00092g01414' => 'pax', 'Peaxi162Scf00165g00818' => 'pax', 'Peaxi162Scf00309g00516' => 'pax', 'Peaxi162Scf00774g00218' => 'pax', 'PGR004G1824' => 'pgr', 'PGR004G2606' => 'pgr', 'PGR031G2716' => 'pgr', 'PGR102G2460' => 'pgr', 'PGR142G2599' => 'pgr', 'PGSC0003DMG400000843' => 'stu', 'PGSC0003DMG400008829' => 'stu', 'PGSC0003DMG400030418' => 'stu', 'PGSC0003DMG400031834' => 'stu', 'PGSC0003DMG401028300' => 'stu', 'PGSC0003DMG402028300' => 'stu', 'Phvul.001G219300' => 'pvu', 'Phvul.007G056000' => 'pvu', 'Phvul.007G208000' => 'pvu', 'Phvul.008G119500' => 'pvu', 'Phvul.010G011200' => 'pvu', 'Phvul.010G014800' => 'pvu', 'Phvul.011G062900' => 'pvu', 'Phvul.L007043' => 'pvu', 'Potri.001G242300' => 'ptr', 'Potri.002G185300' => 'ptr', 'Potri.006G086900' => 'ptr', 'Potri.008G151700' => 'ptr', 'Potri.009G033500' => 'ptr', 'Potri.010G089300' => 'ptr', 'Potri.014G110800' => 'ptr', 'Pp3c27_8130' => 'ppa', 'Pp3c6_27410' => 'ppa', 'PRCOL_00001659' => 'pco', 'PRCOL_00001927' => 'pco', 'PRCOL_00003649' => 'pco', 'Prupe.1G011600' => 'ppe', 'Prupe.3G000800' => 'ppe', 'Prupe.3G001100' => 'ppe', 'Prupe.6G072700' => 'ppe', 'Prupe.6G072800' => 'ppe', 'Prupe.6G257300' => 'ppe', 'Prupe.8G033000' => 'ppe', 'Psat0s2633g0080' => 'psa', 'Psat0s3396g0080' => 'psa', 'Psat0s3396g0200' => 'psa', 'Psat3g139080' => 'psa', 'Psat5g285080' => 'psa', 'Psat6g157760' => 'psa', 'Psat6g208440' => 'psa', 'Psat7g215320' => 'psa', 'Psat7g215400' => 'psa', 'Psat7g235600' => 'psa', 'Psat7g235760' => 'psa', 'PSO063G4603' => 'pso', 'PSO210G0182' => 'pso', 'PSO210G0196' => 'pso', 'PSO339G0394' => 'pso', 'PSO339G4127' => 'pso', 'PSO513G0064' => 'pso', 'PSO761G0079' => 'pso', 'QL01p031003' => 'qlo', 'QL01p031078' => 'qlo', 'QL06p003004' => 'qlo', 'QL07p048731' => 'qlo', 'QL09p037427' => 'qlo', 'RcHm_v2.0_Chr3g0466361' => 'rch', 'RcHm_v2.0_Chr3g0485571' => 'rch', 'RcHm_v2.0_Chr4g0416551' => 'rch', 'RcHm_v2.0_Chr5g0065831' => 'rch', 'Rhsim01G0230500' => 'rsi', 'Rhsim05G0194000' => 'rsi', 'Rhsim08G0250400' => 'rsi', 'Sabra02G0131000' => 'sbr', 'Sabra06G0066300' => 'sbr', 'Sabra08G0115500' => 'sbr', 'Sabra09G0023900' => 'sbr', 'Sabra10G0054000' => 'sbr', 'Sabra14G0081500' => 'sbr', 'Sabra16G0147100' => 'sbr', 'SalBow2G2957' => 'sbo', 'SalBow4G3320' => 'sbo', 'SalBow8G1894' => 'sbo', 'Sc07g0007950' => 'sci', 'Sc12g0001360' => 'sci', 'Sc13g0004330' => 'sci', 'Sc20g0005010' => 'sci', 'Sed0000361' => 'sed', 'Sed0001706' => 'sed', 'Sed0002422' => 'sed', 'Sed0004029' => 'sed', 'Sed0004602' => 'sed', 'Sed0004943' => 'sed', 'Sed0008646' => 'sed', 'Sed0023313' => 'sed', 'Sed0024843' => 'sed', 'SEGI_00081' => 'sgi', 'SEGI_00947' => 'sgi', 'SEGI_04046' => 'sgi', 'SEGI_06880' => 'sgi', 'SEGI_09736' => 'sgi', 'SEGI_12741' => 'sgi', 'SEGI_14530' => 'sgi', 'SEGI_20705' => 'sgi', 'SEGI_26088' => 'sgi', 'SEGI_28323' => 'sgi', 'SEGI_33343' => 'sgi', 'SGA_v2.0_scaffold126G33775' => 'sas', 'SGA_v2.0_scaffold2G01337' => 'sas', 'SGA_v2.0_scaffold38G15006' => 'sas', 'SGA_v2.0_scaffold39G15264' => 'sas', 'SGA_v2.0_scaffold453G51880' => 'sas', 'SHI12696' => 'shi', 'SMO367G1096' => 'smo', 'Solyc01g068630.3' => 'sly', 'Solyc05g011880.3' => 'sly', 'Solyc06g076300.3' => 'sly', 'Solyc09g010940.4' => 'sly', 'Solyc09g075890.3' => 'sly', 'Sopen01g030560' => 'spe', 'Sopen05g006630' => 'spe', 'Sopen06g032720' => 'spe', 'Sopen09g005660' => 'spe', 'Sopen09g030690' => 'spe', 'Sp4g14540' => 'spa', 'Sp4g20030' => 'spa', 'Sp5g01320' => 'spa', 'Sp6g21170' => 'spa', 'Sp6g21180' => 'spa', 'Sp6g21190' => 'spa', 'Sp6g40220' => 'spa', 'TAR362G0122' => 'tar', 'TAR362G1338' => 'tar', 'TAR369G0590' => 'tar', 'TAR371G0824' => 'tar', 'TAR622G1429' => 'tar', 'TAR623G0734' => 'tar', 'TAR625G0441' => 'tar', 'TAR629G0976' => 'tar', 'TAR633G1195' => 'tar', 'TAR636G2660' => 'tar', 'THA.LOC104799440' => 'tha', 'THA.LOC104800966' => 'tha', 'THA.LOC104806559' => 'tha', 'THA.LOC104810765' => 'tha', 'THA.LOC104816266' => 'tha', 'THA.LOC104817419' => 'tha', 'THA.LOC104827021' => 'tha', 'Thecc.01G327400' => 'tca', 'Thecc.04G229200' => 'tca', 'Thecc.05G037400' => 'tca', 'Thecc.09G318600' => 'tca', 'Thecc.09G318700' => 'tca', 'Thhalv10006238m.g' => 'esa', 'Thhalv10014321m.g' => 'esa', 'Thhalv10014335m.g' => 'esa', 'Thhalv10015826m.g' => 'esa', 'Thhalv10017107m.g' => 'esa', 'Thhalv10017180m.g' => 'esa', 'Thhalv10029339m.g' => 'esa', 'TPR.G1699' => 'tpr', 'TPR.G23609' => 'tpr', 'TPR.G3081' => 'tpr', 'TPR.G40397' => 'tpr', 'TPR.G5522' => 'tpr', 'TPR.G5618' => 'tpr', 'TPR.G5626' => 'tpr', 'TWI09G1632' => 'twi', 'TWI23G1230' => 'twi', 'TWI53G1064' => 'twi', 'TWI59G0751' => 'twi', 'TWI74G0947' => 'twi', 'TWI77G0337' => 'twi', 'TWI79G1254' => 'twi', 'unitig_0.g2341' => 'ugi', 'unitig_26.g10006' => 'ugi', 'unitig_26.g10008' => 'ugi', 'unitig_26.g9192' => 'ugi', 'vmacro14547' => 'vma', 'vmacro15333' => 'vma', 'vmacro18743' => 'vma', 'vmacro20166' => 'vma', 'VMungo0331G0523' => 'vmu', 'VMungo0331G1202' => 'vmu', 'VMungo0720G1228' => 'vmu', 'VMungo0720G1514' => 'vmu', 'VMungo1080G0169' => 'vmu', 'VMungo1127G1475' => 'vmu', 'VMungo1383G1208' => 'vmu', 'VMungo1383G1698' => 'vmu', 'Zm00001eb012270' => 'zma', 'Zm00001eb054100' => 'zma', 'Zm00001eb063350' => 'zma', 'Zm00001eb328560' => 'zma', 'Zm00001eb342820' => 'zma', 'Zm00001eb362210' => 'zma', 'Zm00001eb397730' => 'zma', 'Zm00001eb399750' => 'zma' ) $gf_id = 'HOM05D000959' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000959' ) $data_identifier = 'HOM05D000959' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 5, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 5, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 10, 'mbi' => (int) 3, 'mco' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 2, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 3, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 11, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399750' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000959', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '622', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p07100' => 'bna', 'A03p11720' => 'bna', 'A05p08300' => 'bna', 'A05p13380' => 'bna', 'A09p54130' => 'bna', 'A10p16690' => 'bna', 'A10p16700' => 'bna', 'A10p33390' => 'bna', 'Aa31LG10G16020' => 'aar', 'Aa31LG1G11810' => 'aar', 'Aa31LG1G11830' => 'aar', 'Aa31LG1G22510' => 'aar', 'Aa31LG5G4890' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5793' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2310' => 'aag', 'Actinidia08499' => 'ach', 'Actinidia11262' => 'ach', 'Actinidia23926' => 'ach', 'Actinidia34420' => 'ach', 'Actinidia36970' => 'ach', 'Ah.02g111220' => 'amhyb', 'Ah.15g097750' => 'amhyb', 'AL4G27500' => 'aly', 'AL6G11470' => 'aly', 'AL8G35950' => 'aly', 'AL8G35960' => 'aly', 'AL8G35970' => 'aly', 'Aqoxy1G00912' => 'aox', 'Aqoxy2G02253' => 'aox', 'Aqoxy2G02411' => 'aox', 'Aqoxy5G00485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BZ66YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K8ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM4FUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6BF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HFV7XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25JBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0YNNV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MAKK6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P70IT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP2Z6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V61LZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YWP64R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3S9AI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7PGHH' => 'arhy', 'AT2G32150' => 'ath', 'AT3G62040' => 'ath', 'AT5G02230' => 'ath', 'AT5G59480' => 'ath', 'AT5G59490' => 'ath', 'ATR0332G060' => 'atr', 'ATR0559G190' => 'atr', 'ATR0693G294' => 'atr', 'Atru.chr3.3975' => 'acertr', 'Atru.chr3.3976' => 'acertr', 'Atru.chr3.3977' => 'acertr', 'Atru.chr4.2498' => 'acertr', 'Atru.chr5.838' => 'acertr', 'Atru.chr8.1990' => 'acertr', 'Atru.chr8.1991' => 'acertr', 'Atru.chr8.1992' => 'acertr', 'AUR62001759' => 'cqu', 'AUR62009545' => 'cqu', 'AUR62010474' => 'cqu', 'AUR62025820' => 'cqu', 'AUR62030422' => 'cqu', 'AUR62033605' => 'cqu', 'AUR62038615' => 'cqu', 'AUR62041347' => 'cqu', 'BcaB01g04574' => 'bca', 'BcaB02g09263' => 'bca', 'BcaB02g10453' => 'bca', 'BcaB05g22513' => 'bca', 'BcaB08g36253' => 'bca', 'BcaB08g36254' => 'bca', 'BcaC01g06519' => 'bca', 'BcaC02g11889' => 'bca', 'BcaC03g14010' => 'bca', 'BcaC03g18439' => 'bca', 'BcaC04g19765' => 'bca', 'BcaC09g48432' => 'bca', 'BcaNung07302' => 'bca', 'BolC2t06040H' => 'bol', 'BolC2t07346H' => 'bol', 'BolC3t13817H' => 'bol', 'BolC4t22625H' => 'bol', 'BolC4t23297H' => 'bol', 'BolC8t51278H' => 'bol', 'BolC9t58050H' => 'bol', 'BolC9t58051H' => 'bol', 'BolC9t60163H' => 'bol', 'BraA02t04712Z' => 'bra', 'BraA02t05791Z' => 'bra', 'BraA03t10483Z' => 'bra', 'BraA05t19795Z' => 'bra', 'BraA05t20276Z' => 'bra', 'BraA09t40827Z' => 'bra', 'BraA10t43750Z' => 'bra', 'BraA10t43751Z' => 'bra', 'BraA10t45370Z' => 'bra', 'C02p00400' => 'bna', 'C02p12460' => 'bna', 'C03p13680' => 'bna', 'C04p10270' => 'bna', 'C04p17500' => 'bna', 'C08p37010' => 'bna', 'C09p51880' => 'bna', 'C09p51890' => 'bna', 'C09p74300' => 'bna', 'CAN.G179.26' => 'can', 'CAN.G3384.1' => 'can', 'CAN.G394.68' => 'can', 'CAN.G907.13' => 'can', 'CANSAT11G0012' => 'cansat', 'CANSAT25G1586' => 'cansat', 'CANSAT35G0735' => 'cansat', 'CANSAT54G0556' => 'cansat', 'CANSAT64G0356' => 'cansat', 'CANSAT78G2042' => 'cansat', 'CARHR125920' => 'chi', 'CARHR131910' => 'chi', 'CARHR172390' => 'chi', 'CARHR211140' => 'chi', 'CARHR285850' => 'chi', 'CARHR285860' => 'chi', 'Carub.0004s1347' => 'cru', 'Carub.0004s1960' => 'cru', 'Carub.0005s2880' => 'cru', 'Carub.0006s0107' => 'cru', 'Carub.0008s2015' => 'cru', 'Carub.0008s2016' => 'cru', 'Carub.0008s2017' => 'cru', 'Ca_01315_v3' => 'car', 'Ca_05063_v3' => 'car', 'Ca_10231_v3' => 'car', 'Ca_10913_v3' => 'car', 'Ca_19156_v3' => 'car', 'Ca_23644_v3' => 'car', 'Ca_26735_v3' => 'car', 'Cc01_g13130' => 'ccan', 'Cc02_g21690' => 'ccan', 'Cc03_g03600' => 'ccan', 'Cc06_g02510' => 'ccan', 'CDE02G1265' => 'cde', 'CDE05G0415' => 'cde', 'CDE08G1082' => 'cde', 'Cfa005780' => 'cfa', 'Cfa011522' => 'cfa', 'Cfa011523' => 'cfa', 'Cfa015627' => 'cfa', 'Cfa017359' => 'cfa', 'Ciclev10005687m.g' => 'ccl', 'Ciclev10012173m.g' => 'ccl', 'Ciclev10021621m.g' => 'ccl', 'Ciclev10028968m.g' => 'ccl', 'Ciclev10029907m.g' => 'ccl', 'CiPaw.01G164800' => 'cil', 'CiPaw.07G083700' => 'cil', 'CiPaw.07G127000' => 'cil', 'CiPaw.07G136900' => 'cil', 'CiPaw.08G081700' => 'cil', 'CiPaw.09G194600' => 'cil', 'CiPaw.10G146500' => 'cil', 'CiPaw.13G091500' => 'cil', 'CiPaw.13G091600' => 'cil', 'ClCG00G003390' => 'cla', 'ClCG01G007220' => 'cla', 'ClCG03G001370' => 'cla', 'ClCG04G008100' => 'cla', 'ClCG06G006110' => 'cla', 'ClCG06G006130' => 'cla', 'ClCG10G021210' => 'cla', 'COL.COLO4_07648' => 'col', 'COL.COLO4_07650' => 'col', 'COL.COLO4_07651' => 'col', 'COL.COLO4_14780' => 'col', 'COL.COLO4_18546' => 'col', 'COL.COLO4_18547' => 'col', 'COL.COLO4_23103' => 'col', 'COL.COLO4_30419' => 'col', 'COL.COLO4_34232' => 'col', 'Cpa.g.sc169.20' => 'cpa', 'Cpa.g.sc57.45' => 'cpa', 'Cpa.g.sc58.124' => 'cpa', 'Cpa.g.sc58.125' => 'cpa', 'Cpa.g.sc81.118' => 'cpa', 'Cpa.g.sc81.119' => 'cpa', 'Cre12.g524700' => 'cre', 'CsaV3_1G034430' => 'csa', 'CsaV3_1G034440' => 'csa', 'CsaV3_1G034450' => 'csa', 'CsaV3_3G034830' => 'csa', 'CsaV3_4G025090' => 'csa', 'CsaV3_5G018660' => 'csa', 'CsaV3_6G038160' => 'csa', 'CSS0003447' => 'camsi', 'CSS0017840' => 'camsi', 'CSS0019260' => 'camsi', 'CSS0040375' => 'camsi', 'CSS0042533' => 'camsi', 'DCAR_005960' => 'dca', 'DCAR_012104' => 'dca', 'DCAR_012105' => 'dca', 'DCAR_012293' => 'dca', 'DCAR_015632' => 'dca', 'DCAR_024602' => 'dca', 'DCAR_028752' => 'dca', 'Dinv06261' => 'din', 'Dinv13982' => 'din', 'Dinv17029' => 'din', 'Dinv18463' => 'din', 'Dinv33181' => 'din', 'Dinv35585' => 'din', 'Dinv37161' => 'din', 'Dinv42977' => 'din', 'Dinv43122' => 'din', 'Dinv44517' => 'din', 'Duzib093G0256' => 'dzi', 'Duzib106G1254' => 'dzi', 'Duzib128G1789' => 'dzi', 'Duzib133G0633' => 'dzi', 'Duzib138G0510' => 'dzi', 'Duzib150G1084' => 'dzi', 'Duzib168G0488' => 'dzi', 'Duzib168G1523' => 'dzi', 'Duzib170G0133' => 'dzi', 'ECA234G1433' => 'eca', 'ECA236G1432' => 'eca', 'ECA236G2256' => 'eca', 'ECA236G2365' => 'eca', 'ECA236G4830' => 'eca', 'ECA248G1505' => 'eca', 'EL10Ac3g06431' => 'bvu', 'EL10Ac5g12577' => 'bvu', 'EL10Ac6g13533' => 'bvu', 'EL10Ac7g16045' => 'bvu', 'Eucgr.A01281' => 'egr', 'Eucgr.B02326' => 'egr', 'Eucgr.H03532' => 'egr', 'Eucgr.K00553' => 'egr', 'Eucgr.K03116' => 'egr', 'FAN02G3963' => 'fan', 'FAN05G0438' => 'fan', 'FAN09G2434' => 'fan', 'FAN12G3984' => 'fan', 'FAN14G0798' => 'fan', 'FAN17G0652' => 'fan', 'FAN19G1988' => 'fan', 'FAN22G0632' => 'fan', 'FAN23G0387' => 'fan', 'FAN26G1323' => 'fan', 'FAN28G0666' => 'fan', 'FvH4_1g26080' => 'fve', 'FvH4_3g36780' => 'fve', 'FvH4_4g15270' => 'fve', 'FvH4_6g13490' => 'fve', 'Glyma.01G098700' => 'gma', 'Glyma.03G065900' => 'gma', 'Glyma.03G073754' => 'gma', 'Glyma.03G073758' => 'gma', 'Glyma.03G083200' => 'gma', 'Glyma.03G225500' => 'gma', 'Glyma.05G037766' => 'gma', 'Glyma.07G133500' => 'gma', 'Glyma.10G139400' => 'gma', 'Glyma.10G248900' => 'gma', 'Glyma.11G137800' => 'gma', 'Glyma.12G061300' => 'gma', 'Glyma.13G337900' => 'gma', 'Glyma.15G036600' => 'gma', 'Glyma.18G182800' => 'gma', 'Glyma.19G222500' => 'gma', 'Glyma.20G144800' => 'gma', 'Gohir.A01G222000' => 'ghi', 'Gohir.A03G044000' => 'ghi', 'Gohir.A03G044100' => 'ghi', 'Gohir.A04G083100' => 'ghi', 'Gohir.A07G127200' => 'ghi', 'Gohir.A07G132400' => 'ghi', 'Gohir.A08G000700' => 'ghi', 'Gohir.A11G327300' => 'ghi', 'Gohir.D01G211500' => 'ghi', 'Gohir.D03G123400' => 'ghi', 'Gohir.D03G123500' => 'ghi', 'Gohir.D04G121800' => 'ghi', 'Gohir.D07G131500' => 'ghi', 'Gohir.D07G136600' => 'ghi', 'Gohir.D08G011600' => 'ghi', 'Gohir.D11G346200' => 'ghi', 'Gorai.001G142800' => 'gra', 'Gorai.001G148700' => 'gra', 'Gorai.002G257300' => 'gra', 'Gorai.003G130000' => 'gra', 'Gorai.003G130100' => 'gra', 'Gorai.004G005300' => 'gra', 'Gorai.007G376500' => 'gra', 'Gorai.012G104700' => 'gra', 'GSVIVG01017946001' => 'vvi', 'GSVIVG01024928001' => 'vvi', 'GSVIVG01028227001' => 'vvi', 'GSVIVG01034151001' => 'vvi', 'HanXRQChr05g0135031' => 'han', 'HanXRQChr05g0135041' => 'han', 'HanXRQChr05g0140021' => 'han', 'HanXRQChr06g0178981' => 'han', 'HanXRQChr07g0188251' => 'han', 'HanXRQChr08g0235311' => 'han', 'HanXRQChr09g0271011' => 'han', 'HanXRQChr10g0293321' => 'han', 'HanXRQChr13g0388171' => 'han', 'Haze_00916' => 'cav', 'Haze_05063' => 'cav', 'Haze_20814' => 'cav', 'Haze_24128' => 'cav', 'Hma1.2p1_0745F.1_g212010' => 'hma', 'Hma1.2p1_0757F.1_g213260' => 'hma', 'Hma1.2p1_0936F.1_g238840' => 'hma', 'Hma1.2p1_1735F.1_g299890' => 'hma', 'Hma1.2p1_1861F.1_g305685' => 'hma', 'HPP92_003397' => 'vpl', 'HPP92_012597' => 'vpl', 'HPP92_015520' => 'vpl', 'HPP92_015539' => 'vpl', 'HPP92_020373' => 'vpl', 'Hund04938' => 'sun', 'Hund10677' => 'sun', 'Hund11033' => 'sun', 'Hund12155' => 'sun', 'Lalb_Chr01g0022551' => 'lal', 'Lalb_Chr03g0042341' => 'lal', 'Lalb_Chr07g0192931' => 'lal', 'Lalb_Chr12g0209551' => 'lal', 'Lalb_Chr19g0125251' => 'lal', 'Lalb_Chr19g0137891' => 'lal', 'Lalb_Chr21g0304641' => 'lal', 'Lalb_Chr21g0309881' => 'lal', 'Lj1A5T12' => 'lonja', 'Lj1C148G10' => 'lonja', 'Lj2A93T83' => 'lonja', 'Lj3A738G68' => 'lonja', 'Lj3C966T1' => 'lonja', 'Lj3g0018958' => 'lja', 'Lj3g0021831' => 'lja', 'Lj3g0025443' => 'lja', 'Lj4g0026809' => 'lja', 'Lj5g0012558' => 'lja', 'Lj5g0021586' => 'lja', 'Lsat_1_v5_gn_5_156840' => 'lsa', 'Lsat_1_v5_gn_8_73460' => 'lsa', 'Lsat_1_v5_gn_8_73481' => 'lsa', 'Lsat_1_v5_gn_9_31601' => 'lsa', 'Lsat_1_v5_gn_9_77320' => 'lsa', 'Manes.01G171300' => 'mes', 'Manes.01G171400' => 'mes', 'Manes.01G236100' => 'mes', 'Manes.02G130500' => 'mes', 'Manes.02G130600' => 'mes', 'Manes.03G180200' => 'mes', 'Manes.05G007000' => 'mes', 'Manes.08G084400' => 'mes', 'Manes.09G092600' => 'mes', 'Manes.15G027900' => 'mes', 'MBI04_g40948_MAGBIO' => 'mbi', 'MBI14_g12123_MAGBIO' => 'mbi', 'MBI18_g28915_MAGBIO' => 'mbi', 'MCO09G053' => 'mco', 'MCO11G782' => 'mco', 'MCO15G215' => 'mco', 'MD03G1088500' => 'mdo', 'MD03G1088600' => 'mdo', 'MD04G1130800' => 'mdo', 'MD09G1291700' => 'mdo', 'MD11G1097500' => 'mdo', 'MD11G1097600' => 'mdo', 'MD12G1143900' => 'mdo', 'MD13G1191400' => 'mdo', 'MD16G1191500' => 'mdo', 'Medtr1g085570' => 'mtr', 'Medtr1g104610' => 'mtr', 'Medtr2g097520' => 'mtr', 'Medtr4g021800' => 'mtr', 'Medtr4g021825' => 'mtr', 'Medtr4g064270' => 'mtr', 'Medtr4g064380' => 'mtr', 'Medtr7g062150' => 'mtr', 'MELO3C003138.2' => 'cme', 'MELO3C005187.2' => 'cme', 'MELO3C009252.2' => 'cme', 'MELO3C014481.2' => 'cme', 'MELO3C020616.2' => 'cme', 'MELO3C020617.2' => 'cme', 'MELO3C020618.2' => 'cme', 'Migut.G00328' => 'egut', 'Migut.J00320' => 'egut', 'Migut.L01000' => 'egut', 'Migut.L01953' => 'egut', 'MSTRG.10253' => 'ama', 'MSTRG.19077' => 'ama', 'MSTRG.26780' => 'ama', 'MSTRG.4023' => 'ama', 'MSTRG.5655' => 'ama', 'MSTRG.9992' => 'ama', 'Nitab4.5_0000043g0310' => 'nta', 'Nitab4.5_0000463g0080' => 'nta', 'Nitab4.5_0000705g0170' => 'nta', 'Nitab4.5_0001326g0060' => 'nta', 'Nitab4.5_0001628g0030' => 'nta', 'Nitab4.5_0002103g0110' => 'nta', 'Nitab4.5_0002946g0030' => 'nta', 'Nitab4.5_0004639g0030' => 'nta', 'Nn2g11149' => 'nnu', 'Nn2g13389' => 'nnu', 'Nn4g25326' => 'nnu', 'Nn4g26290' => 'nnu', 'Nn5g29865' => 'nnu', 'Oeu004163.1' => 'oeu', 'Oeu006901.1' => 'oeu', 'Oeu010096.1' => 'oeu', 'Oeu024340.1' => 'oeu', 'Oeu048369.1' => 'oeu', 'Os01g0973000' => 'osa', 'Os03g0273800' => 'osa', 'Os03g0701200' => 'osa', 'Os03g0834050' => 'osa', 'Os07g0634400' => 'osa', 'Peaxi162Scf00092g01414' => 'pax', 'Peaxi162Scf00165g00818' => 'pax', 'Peaxi162Scf00309g00516' => 'pax', 'Peaxi162Scf00774g00218' => 'pax', 'PGR004G1824' => 'pgr', 'PGR004G2606' => 'pgr', 'PGR031G2716' => 'pgr', 'PGR102G2460' => 'pgr', 'PGR142G2599' => 'pgr', 'PGSC0003DMG400000843' => 'stu', 'PGSC0003DMG400008829' => 'stu', 'PGSC0003DMG400030418' => 'stu', 'PGSC0003DMG400031834' => 'stu', 'PGSC0003DMG401028300' => 'stu', 'PGSC0003DMG402028300' => 'stu', 'Phvul.001G219300' => 'pvu', 'Phvul.007G056000' => 'pvu', 'Phvul.007G208000' => 'pvu', 'Phvul.008G119500' => 'pvu', 'Phvul.010G011200' => 'pvu', 'Phvul.010G014800' => 'pvu', 'Phvul.011G062900' => 'pvu', 'Phvul.L007043' => 'pvu', 'Potri.001G242300' => 'ptr', 'Potri.002G185300' => 'ptr', 'Potri.006G086900' => 'ptr', 'Potri.008G151700' => 'ptr', 'Potri.009G033500' => 'ptr', 'Potri.010G089300' => 'ptr', 'Potri.014G110800' => 'ptr', 'Pp3c27_8130' => 'ppa', 'Pp3c6_27410' => 'ppa', 'PRCOL_00001659' => 'pco', 'PRCOL_00001927' => 'pco', 'PRCOL_00003649' => 'pco', 'Prupe.1G011600' => 'ppe', 'Prupe.3G000800' => 'ppe', 'Prupe.3G001100' => 'ppe', 'Prupe.6G072700' => 'ppe', 'Prupe.6G072800' => 'ppe', 'Prupe.6G257300' => 'ppe', 'Prupe.8G033000' => 'ppe', 'Psat0s2633g0080' => 'psa', 'Psat0s3396g0080' => 'psa', 'Psat0s3396g0200' => 'psa', 'Psat3g139080' => 'psa', 'Psat5g285080' => 'psa', 'Psat6g157760' => 'psa', 'Psat6g208440' => 'psa', 'Psat7g215320' => 'psa', 'Psat7g215400' => 'psa', 'Psat7g235600' => 'psa', 'Psat7g235760' => 'psa', 'PSO063G4603' => 'pso', 'PSO210G0182' => 'pso', 'PSO210G0196' => 'pso', 'PSO339G0394' => 'pso', 'PSO339G4127' => 'pso', 'PSO513G0064' => 'pso', 'PSO761G0079' => 'pso', 'QL01p031003' => 'qlo', 'QL01p031078' => 'qlo', 'QL06p003004' => 'qlo', 'QL07p048731' => 'qlo', 'QL09p037427' => 'qlo', 'RcHm_v2.0_Chr3g0466361' => 'rch', 'RcHm_v2.0_Chr3g0485571' => 'rch', 'RcHm_v2.0_Chr4g0416551' => 'rch', 'RcHm_v2.0_Chr5g0065831' => 'rch', 'Rhsim01G0230500' => 'rsi', 'Rhsim05G0194000' => 'rsi', 'Rhsim08G0250400' => 'rsi', 'Sabra02G0131000' => 'sbr', 'Sabra06G0066300' => 'sbr', 'Sabra08G0115500' => 'sbr', 'Sabra09G0023900' => 'sbr', 'Sabra10G0054000' => 'sbr', 'Sabra14G0081500' => 'sbr', 'Sabra16G0147100' => 'sbr', 'SalBow2G2957' => 'sbo', 'SalBow4G3320' => 'sbo', 'SalBow8G1894' => 'sbo', 'Sc07g0007950' => 'sci', 'Sc12g0001360' => 'sci', 'Sc13g0004330' => 'sci', 'Sc20g0005010' => 'sci', 'Sed0000361' => 'sed', 'Sed0001706' => 'sed', 'Sed0002422' => 'sed', 'Sed0004029' => 'sed', 'Sed0004602' => 'sed', 'Sed0004943' => 'sed', 'Sed0008646' => 'sed', 'Sed0023313' => 'sed', 'Sed0024843' => 'sed', 'SEGI_00081' => 'sgi', 'SEGI_00947' => 'sgi', 'SEGI_04046' => 'sgi', 'SEGI_06880' => 'sgi', 'SEGI_09736' => 'sgi', 'SEGI_12741' => 'sgi', 'SEGI_14530' => 'sgi', 'SEGI_20705' => 'sgi', 'SEGI_26088' => 'sgi', 'SEGI_28323' => 'sgi', 'SEGI_33343' => 'sgi', 'SGA_v2.0_scaffold126G33775' => 'sas', 'SGA_v2.0_scaffold2G01337' => 'sas', 'SGA_v2.0_scaffold38G15006' => 'sas', 'SGA_v2.0_scaffold39G15264' => 'sas', 'SGA_v2.0_scaffold453G51880' => 'sas', 'SHI12696' => 'shi', 'SMO367G1096' => 'smo', 'Solyc01g068630.3' => 'sly', 'Solyc05g011880.3' => 'sly', 'Solyc06g076300.3' => 'sly', 'Solyc09g010940.4' => 'sly', 'Solyc09g075890.3' => 'sly', 'Sopen01g030560' => 'spe', 'Sopen05g006630' => 'spe', 'Sopen06g032720' => 'spe', 'Sopen09g005660' => 'spe', 'Sopen09g030690' => 'spe', 'Sp4g14540' => 'spa', 'Sp4g20030' => 'spa', 'Sp5g01320' => 'spa', 'Sp6g21170' => 'spa', 'Sp6g21180' => 'spa', 'Sp6g21190' => 'spa', 'Sp6g40220' => 'spa', 'TAR362G0122' => 'tar', 'TAR362G1338' => 'tar', 'TAR369G0590' => 'tar', 'TAR371G0824' => 'tar', 'TAR622G1429' => 'tar', 'TAR623G0734' => 'tar', 'TAR625G0441' => 'tar', 'TAR629G0976' => 'tar', 'TAR633G1195' => 'tar', 'TAR636G2660' => 'tar', 'THA.LOC104799440' => 'tha', 'THA.LOC104800966' => 'tha', 'THA.LOC104806559' => 'tha', 'THA.LOC104810765' => 'tha', 'THA.LOC104816266' => 'tha', 'THA.LOC104817419' => 'tha', 'THA.LOC104827021' => 'tha', 'Thecc.01G327400' => 'tca', 'Thecc.04G229200' => 'tca', 'Thecc.05G037400' => 'tca', 'Thecc.09G318600' => 'tca', 'Thecc.09G318700' => 'tca', 'Thhalv10006238m.g' => 'esa', 'Thhalv10014321m.g' => 'esa', 'Thhalv10014335m.g' => 'esa', 'Thhalv10015826m.g' => 'esa', 'Thhalv10017107m.g' => 'esa', 'Thhalv10017180m.g' => 'esa', 'Thhalv10029339m.g' => 'esa', 'TPR.G1699' => 'tpr', 'TPR.G23609' => 'tpr', 'TPR.G3081' => 'tpr', 'TPR.G40397' => 'tpr', 'TPR.G5522' => 'tpr', 'TPR.G5618' => 'tpr', 'TPR.G5626' => 'tpr', 'TWI09G1632' => 'twi', 'TWI23G1230' => 'twi', 'TWI53G1064' => 'twi', 'TWI59G0751' => 'twi', 'TWI74G0947' => 'twi', 'TWI77G0337' => 'twi', 'TWI79G1254' => 'twi', 'unitig_0.g2341' => 'ugi', 'unitig_26.g10006' => 'ugi', 'unitig_26.g10008' => 'ugi', 'unitig_26.g9192' => 'ugi', 'vmacro14547' => 'vma', 'vmacro15333' => 'vma', 'vmacro18743' => 'vma', 'vmacro20166' => 'vma', 'VMungo0331G0523' => 'vmu', 'VMungo0331G1202' => 'vmu', 'VMungo0720G1228' => 'vmu', 'VMungo0720G1514' => 'vmu', 'VMungo1080G0169' => 'vmu', 'VMungo1127G1475' => 'vmu', 'VMungo1383G1208' => 'vmu', 'VMungo1383G1698' => 'vmu', 'Zm00001eb012270' => 'zma', 'Zm00001eb054100' => 'zma', 'Zm00001eb063350' => 'zma', 'Zm00001eb328560' => 'zma', 'Zm00001eb342820' => 'zma', 'Zm00001eb362210' => 'zma', 'Zm00001eb397730' => 'zma', 'Zm00001eb399750' => 'zma' ), 'gf_id' => 'HOM05D000959', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000959' ), 'data_identifier' => 'HOM05D000959', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000959', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '622', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p07100' => 'bna', 'A03p11720' => 'bna', 'A05p08300' => 'bna', 'A05p13380' => 'bna', 'A09p54130' => 'bna', 'A10p16690' => 'bna', 'A10p16700' => 'bna', 'A10p33390' => 'bna', 'Aa31LG10G16020' => 'aar', 'Aa31LG1G11810' => 'aar', 'Aa31LG1G11830' => 'aar', 'Aa31LG1G22510' => 'aar', 'Aa31LG5G4890' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5793' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2310' => 'aag', 'Actinidia08499' => 'ach', 'Actinidia11262' => 'ach', 'Actinidia23926' => 'ach', 'Actinidia34420' => 'ach', 'Actinidia36970' => 'ach', 'Ah.02g111220' => 'amhyb', 'Ah.15g097750' => 'amhyb', 'AL4G27500' => 'aly', 'AL6G11470' => 'aly', 'AL8G35950' => 'aly', 'AL8G35960' => 'aly', 'AL8G35970' => 'aly', 'Aqoxy1G00912' => 'aox', 'Aqoxy2G02253' => 'aox', 'Aqoxy2G02411' => 'aox', 'Aqoxy5G00485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BZ66YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K8ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM4FUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6BF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HFV7XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25JBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0YNNV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MAKK6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P70IT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP2Z6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V61LZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YWP64R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3S9AI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7PGHH' => 'arhy', 'AT2G32150' => 'ath', 'AT3G62040' => 'ath', 'AT5G02230' => 'ath', 'AT5G59480' => 'ath', 'AT5G59490' => 'ath', 'ATR0332G060' => 'atr', 'ATR0559G190' => 'atr', 'ATR0693G294' => 'atr', 'Atru.chr3.3975' => 'acertr', 'Atru.chr3.3976' => 'acertr', 'Atru.chr3.3977' => 'acertr', 'Atru.chr4.2498' => 'acertr', 'Atru.chr5.838' => 'acertr', 'Atru.chr8.1990' => 'acertr', 'Atru.chr8.1991' => 'acertr', 'Atru.chr8.1992' => 'acertr', 'AUR62001759' => 'cqu', 'AUR62009545' => 'cqu', 'AUR62010474' => 'cqu', 'AUR62025820' => 'cqu', 'AUR62030422' => 'cqu', 'AUR62033605' => 'cqu', 'AUR62038615' => 'cqu', 'AUR62041347' => 'cqu', 'BcaB01g04574' => 'bca', 'BcaB02g09263' => 'bca', 'BcaB02g10453' => 'bca', 'BcaB05g22513' => 'bca', 'BcaB08g36253' => 'bca', 'BcaB08g36254' => 'bca', 'BcaC01g06519' => 'bca', 'BcaC02g11889' => 'bca', 'BcaC03g14010' => 'bca', 'BcaC03g18439' => 'bca', 'BcaC04g19765' => 'bca', 'BcaC09g48432' => 'bca', 'BcaNung07302' => 'bca', 'BolC2t06040H' => 'bol', 'BolC2t07346H' => 'bol', 'BolC3t13817H' => 'bol', 'BolC4t22625H' => 'bol', 'BolC4t23297H' => 'bol', 'BolC8t51278H' => 'bol', 'BolC9t58050H' => 'bol', 'BolC9t58051H' => 'bol', 'BolC9t60163H' => 'bol', 'BraA02t04712Z' => 'bra', 'BraA02t05791Z' => 'bra', 'BraA03t10483Z' => 'bra', 'BraA05t19795Z' => 'bra', 'BraA05t20276Z' => 'bra', 'BraA09t40827Z' => 'bra', 'BraA10t43750Z' => 'bra', 'BraA10t43751Z' => 'bra', 'BraA10t45370Z' => 'bra', 'C02p00400' => 'bna', 'C02p12460' => 'bna', 'C03p13680' => 'bna', 'C04p10270' => 'bna', 'C04p17500' => 'bna', 'C08p37010' => 'bna', 'C09p51880' => 'bna', 'C09p51890' => 'bna', 'C09p74300' => 'bna', 'CAN.G179.26' => 'can', 'CAN.G3384.1' => 'can', 'CAN.G394.68' => 'can', 'CAN.G907.13' => 'can', 'CANSAT11G0012' => 'cansat', 'CANSAT25G1586' => 'cansat', 'CANSAT35G0735' => 'cansat', 'CANSAT54G0556' => 'cansat', 'CANSAT64G0356' => 'cansat', 'CANSAT78G2042' => 'cansat', 'CARHR125920' => 'chi', 'CARHR131910' => 'chi', 'CARHR172390' => 'chi', 'CARHR211140' => 'chi', 'CARHR285850' => 'chi', 'CARHR285860' => 'chi', 'Carub.0004s1347' => 'cru', 'Carub.0004s1960' => 'cru', 'Carub.0005s2880' => 'cru', 'Carub.0006s0107' => 'cru', 'Carub.0008s2015' => 'cru', 'Carub.0008s2016' => 'cru', 'Carub.0008s2017' => 'cru', 'Ca_01315_v3' => 'car', 'Ca_05063_v3' => 'car', 'Ca_10231_v3' => 'car', 'Ca_10913_v3' => 'car', 'Ca_19156_v3' => 'car', 'Ca_23644_v3' => 'car', 'Ca_26735_v3' => 'car', 'Cc01_g13130' => 'ccan', 'Cc02_g21690' => 'ccan', 'Cc03_g03600' => 'ccan', 'Cc06_g02510' => 'ccan', 'CDE02G1265' => 'cde', 'CDE05G0415' => 'cde', 'CDE08G1082' => 'cde', 'Cfa005780' => 'cfa', 'Cfa011522' => 'cfa', 'Cfa011523' => 'cfa', 'Cfa015627' => 'cfa', 'Cfa017359' => 'cfa', 'Ciclev10005687m.g' => 'ccl', 'Ciclev10012173m.g' => 'ccl', 'Ciclev10021621m.g' => 'ccl', 'Ciclev10028968m.g' => 'ccl', 'Ciclev10029907m.g' => 'ccl', 'CiPaw.01G164800' => 'cil', 'CiPaw.07G083700' => 'cil', 'CiPaw.07G127000' => 'cil', 'CiPaw.07G136900' => 'cil', 'CiPaw.08G081700' => 'cil', 'CiPaw.09G194600' => 'cil', 'CiPaw.10G146500' => 'cil', 'CiPaw.13G091500' => 'cil', 'CiPaw.13G091600' => 'cil', 'ClCG00G003390' => 'cla', 'ClCG01G007220' => 'cla', 'ClCG03G001370' => 'cla', 'ClCG04G008100' => 'cla', 'ClCG06G006110' => 'cla', 'ClCG06G006130' => 'cla', 'ClCG10G021210' => 'cla', 'COL.COLO4_07648' => 'col', 'COL.COLO4_07650' => 'col', 'COL.COLO4_07651' => 'col', 'COL.COLO4_14780' => 'col', 'COL.COLO4_18546' => 'col', 'COL.COLO4_18547' => 'col', 'COL.COLO4_23103' => 'col', 'COL.COLO4_30419' => 'col', 'COL.COLO4_34232' => 'col', 'Cpa.g.sc169.20' => 'cpa', 'Cpa.g.sc57.45' => 'cpa', 'Cpa.g.sc58.124' => 'cpa', 'Cpa.g.sc58.125' => 'cpa', 'Cpa.g.sc81.118' => 'cpa', 'Cpa.g.sc81.119' => 'cpa', 'Cre12.g524700' => 'cre', 'CsaV3_1G034430' => 'csa', 'CsaV3_1G034440' => 'csa', 'CsaV3_1G034450' => 'csa', 'CsaV3_3G034830' => 'csa', 'CsaV3_4G025090' => 'csa', 'CsaV3_5G018660' => 'csa', 'CsaV3_6G038160' => 'csa', 'CSS0003447' => 'camsi', 'CSS0017840' => 'camsi', 'CSS0019260' => 'camsi', 'CSS0040375' => 'camsi', 'CSS0042533' => 'camsi', 'DCAR_005960' => 'dca', 'DCAR_012104' => 'dca', 'DCAR_012105' => 'dca', 'DCAR_012293' => 'dca', 'DCAR_015632' => 'dca', 'DCAR_024602' => 'dca', 'DCAR_028752' => 'dca', 'Dinv06261' => 'din', 'Dinv13982' => 'din', 'Dinv17029' => 'din', 'Dinv18463' => 'din', 'Dinv33181' => 'din', 'Dinv35585' => 'din', 'Dinv37161' => 'din', 'Dinv42977' => 'din', 'Dinv43122' => 'din', 'Dinv44517' => 'din', 'Duzib093G0256' => 'dzi', 'Duzib106G1254' => 'dzi', 'Duzib128G1789' => 'dzi', 'Duzib133G0633' => 'dzi', 'Duzib138G0510' => 'dzi', 'Duzib150G1084' => 'dzi', 'Duzib168G0488' => 'dzi', 'Duzib168G1523' => 'dzi', 'Duzib170G0133' => 'dzi', 'ECA234G1433' => 'eca', 'ECA236G1432' => 'eca', 'ECA236G2256' => 'eca', 'ECA236G2365' => 'eca', 'ECA236G4830' => 'eca', 'ECA248G1505' => 'eca', 'EL10Ac3g06431' => 'bvu', 'EL10Ac5g12577' => 'bvu', 'EL10Ac6g13533' => 'bvu', 'EL10Ac7g16045' => 'bvu', 'Eucgr.A01281' => 'egr', 'Eucgr.B02326' => 'egr', 'Eucgr.H03532' => 'egr', 'Eucgr.K00553' => 'egr', 'Eucgr.K03116' => 'egr', 'FAN02G3963' => 'fan', 'FAN05G0438' => 'fan', 'FAN09G2434' => 'fan', 'FAN12G3984' => 'fan', 'FAN14G0798' => 'fan', 'FAN17G0652' => 'fan', 'FAN19G1988' => 'fan', 'FAN22G0632' => 'fan', 'FAN23G0387' => 'fan', 'FAN26G1323' => 'fan', 'FAN28G0666' => 'fan', 'FvH4_1g26080' => 'fve', 'FvH4_3g36780' => 'fve', 'FvH4_4g15270' => 'fve', 'FvH4_6g13490' => 'fve', 'Glyma.01G098700' => 'gma', 'Glyma.03G065900' => 'gma', 'Glyma.03G073754' => 'gma', 'Glyma.03G073758' => 'gma', 'Glyma.03G083200' => 'gma', 'Glyma.03G225500' => 'gma', 'Glyma.05G037766' => 'gma', 'Glyma.07G133500' => 'gma', 'Glyma.10G139400' => 'gma', 'Glyma.10G248900' => 'gma', 'Glyma.11G137800' => 'gma', 'Glyma.12G061300' => 'gma', 'Glyma.13G337900' => 'gma', 'Glyma.15G036600' => 'gma', 'Glyma.18G182800' => 'gma', 'Glyma.19G222500' => 'gma', 'Glyma.20G144800' => 'gma', 'Gohir.A01G222000' => 'ghi', 'Gohir.A03G044000' => 'ghi', 'Gohir.A03G044100' => 'ghi', 'Gohir.A04G083100' => 'ghi', 'Gohir.A07G127200' => 'ghi', 'Gohir.A07G132400' => 'ghi', 'Gohir.A08G000700' => 'ghi', 'Gohir.A11G327300' => 'ghi', 'Gohir.D01G211500' => 'ghi', 'Gohir.D03G123400' => 'ghi', 'Gohir.D03G123500' => 'ghi', 'Gohir.D04G121800' => 'ghi', 'Gohir.D07G131500' => 'ghi', 'Gohir.D07G136600' => 'ghi', 'Gohir.D08G011600' => 'ghi', 'Gohir.D11G346200' => 'ghi', 'Gorai.001G142800' => 'gra', 'Gorai.001G148700' => 'gra', 'Gorai.002G257300' => 'gra', 'Gorai.003G130000' => 'gra', 'Gorai.003G130100' => 'gra', 'Gorai.004G005300' => 'gra', 'Gorai.007G376500' => 'gra', 'Gorai.012G104700' => 'gra', 'GSVIVG01017946001' => 'vvi', 'GSVIVG01024928001' => 'vvi', 'GSVIVG01028227001' => 'vvi', 'GSVIVG01034151001' => 'vvi', 'HanXRQChr05g0135031' => 'han', 'HanXRQChr05g0135041' => 'han', 'HanXRQChr05g0140021' => 'han', 'HanXRQChr06g0178981' => 'han', 'HanXRQChr07g0188251' => 'han', 'HanXRQChr08g0235311' => 'han', 'HanXRQChr09g0271011' => 'han', 'HanXRQChr10g0293321' => 'han', 'HanXRQChr13g0388171' => 'han', 'Haze_00916' => 'cav', 'Haze_05063' => 'cav', 'Haze_20814' => 'cav', 'Haze_24128' => 'cav', 'Hma1.2p1_0745F.1_g212010' => 'hma', 'Hma1.2p1_0757F.1_g213260' => 'hma', 'Hma1.2p1_0936F.1_g238840' => 'hma', 'Hma1.2p1_1735F.1_g299890' => 'hma', 'Hma1.2p1_1861F.1_g305685' => 'hma', 'HPP92_003397' => 'vpl', 'HPP92_012597' => 'vpl', 'HPP92_015520' => 'vpl', 'HPP92_015539' => 'vpl', 'HPP92_020373' => 'vpl', 'Hund04938' => 'sun', 'Hund10677' => 'sun', 'Hund11033' => 'sun', 'Hund12155' => 'sun', 'Lalb_Chr01g0022551' => 'lal', 'Lalb_Chr03g0042341' => 'lal', 'Lalb_Chr07g0192931' => 'lal', 'Lalb_Chr12g0209551' => 'lal', 'Lalb_Chr19g0125251' => 'lal', 'Lalb_Chr19g0137891' => 'lal', 'Lalb_Chr21g0304641' => 'lal', 'Lalb_Chr21g0309881' => 'lal', 'Lj1A5T12' => 'lonja', 'Lj1C148G10' => 'lonja', 'Lj2A93T83' => 'lonja', 'Lj3A738G68' => 'lonja', 'Lj3C966T1' => 'lonja', 'Lj3g0018958' => 'lja', 'Lj3g0021831' => 'lja', 'Lj3g0025443' => 'lja', 'Lj4g0026809' => 'lja', 'Lj5g0012558' => 'lja', 'Lj5g0021586' => 'lja', 'Lsat_1_v5_gn_5_156840' => 'lsa', 'Lsat_1_v5_gn_8_73460' => 'lsa', 'Lsat_1_v5_gn_8_73481' => 'lsa', 'Lsat_1_v5_gn_9_31601' => 'lsa', 'Lsat_1_v5_gn_9_77320' => 'lsa', 'Manes.01G171300' => 'mes', 'Manes.01G171400' => 'mes', 'Manes.01G236100' => 'mes', 'Manes.02G130500' => 'mes', 'Manes.02G130600' => 'mes', 'Manes.03G180200' => 'mes', 'Manes.05G007000' => 'mes', 'Manes.08G084400' => 'mes', 'Manes.09G092600' => 'mes', 'Manes.15G027900' => 'mes', 'MBI04_g40948_MAGBIO' => 'mbi', 'MBI14_g12123_MAGBIO' => 'mbi', 'MBI18_g28915_MAGBIO' => 'mbi', 'MCO09G053' => 'mco', 'MCO11G782' => 'mco', 'MCO15G215' => 'mco', 'MD03G1088500' => 'mdo', 'MD03G1088600' => 'mdo', 'MD04G1130800' => 'mdo', 'MD09G1291700' => 'mdo', 'MD11G1097500' => 'mdo', 'MD11G1097600' => 'mdo', 'MD12G1143900' => 'mdo', 'MD13G1191400' => 'mdo', 'MD16G1191500' => 'mdo', 'Medtr1g085570' => 'mtr', 'Medtr1g104610' => 'mtr', 'Medtr2g097520' => 'mtr', 'Medtr4g021800' => 'mtr', 'Medtr4g021825' => 'mtr', 'Medtr4g064270' => 'mtr', 'Medtr4g064380' => 'mtr', 'Medtr7g062150' => 'mtr', 'MELO3C003138.2' => 'cme', 'MELO3C005187.2' => 'cme', 'MELO3C009252.2' => 'cme', 'MELO3C014481.2' => 'cme', 'MELO3C020616.2' => 'cme', 'MELO3C020617.2' => 'cme', 'MELO3C020618.2' => 'cme', 'Migut.G00328' => 'egut', 'Migut.J00320' => 'egut', 'Migut.L01000' => 'egut', 'Migut.L01953' => 'egut', 'MSTRG.10253' => 'ama', 'MSTRG.19077' => 'ama', 'MSTRG.26780' => 'ama', 'MSTRG.4023' => 'ama', 'MSTRG.5655' => 'ama', 'MSTRG.9992' => 'ama', 'Nitab4.5_0000043g0310' => 'nta', 'Nitab4.5_0000463g0080' => 'nta', 'Nitab4.5_0000705g0170' => 'nta', 'Nitab4.5_0001326g0060' => 'nta', 'Nitab4.5_0001628g0030' => 'nta', 'Nitab4.5_0002103g0110' => 'nta', 'Nitab4.5_0002946g0030' => 'nta', 'Nitab4.5_0004639g0030' => 'nta', 'Nn2g11149' => 'nnu', 'Nn2g13389' => 'nnu', 'Nn4g25326' => 'nnu', 'Nn4g26290' => 'nnu', 'Nn5g29865' => 'nnu', 'Oeu004163.1' => 'oeu', 'Oeu006901.1' => 'oeu', 'Oeu010096.1' => 'oeu', 'Oeu024340.1' => 'oeu', 'Oeu048369.1' => 'oeu', 'Os01g0973000' => 'osa', 'Os03g0273800' => 'osa', 'Os03g0701200' => 'osa', 'Os03g0834050' => 'osa', 'Os07g0634400' => 'osa', 'Peaxi162Scf00092g01414' => 'pax', 'Peaxi162Scf00165g00818' => 'pax', 'Peaxi162Scf00309g00516' => 'pax', 'Peaxi162Scf00774g00218' => 'pax', 'PGR004G1824' => 'pgr', 'PGR004G2606' => 'pgr', 'PGR031G2716' => 'pgr', 'PGR102G2460' => 'pgr', 'PGR142G2599' => 'pgr', 'PGSC0003DMG400000843' => 'stu', 'PGSC0003DMG400008829' => 'stu', 'PGSC0003DMG400030418' => 'stu', 'PGSC0003DMG400031834' => 'stu', 'PGSC0003DMG401028300' => 'stu', 'PGSC0003DMG402028300' => 'stu', 'Phvul.001G219300' => 'pvu', 'Phvul.007G056000' => 'pvu', 'Phvul.007G208000' => 'pvu', 'Phvul.008G119500' => 'pvu', 'Phvul.010G011200' => 'pvu', 'Phvul.010G014800' => 'pvu', 'Phvul.011G062900' => 'pvu', 'Phvul.L007043' => 'pvu', 'Potri.001G242300' => 'ptr', 'Potri.002G185300' => 'ptr', 'Potri.006G086900' => 'ptr', 'Potri.008G151700' => 'ptr', 'Potri.009G033500' => 'ptr', 'Potri.010G089300' => 'ptr', 'Potri.014G110800' => 'ptr', 'Pp3c27_8130' => 'ppa', 'Pp3c6_27410' => 'ppa', 'PRCOL_00001659' => 'pco', 'PRCOL_00001927' => 'pco', 'PRCOL_00003649' => 'pco', 'Prupe.1G011600' => 'ppe', 'Prupe.3G000800' => 'ppe', 'Prupe.3G001100' => 'ppe', 'Prupe.6G072700' => 'ppe', 'Prupe.6G072800' => 'ppe', 'Prupe.6G257300' => 'ppe', 'Prupe.8G033000' => 'ppe', 'Psat0s2633g0080' => 'psa', 'Psat0s3396g0080' => 'psa', 'Psat0s3396g0200' => 'psa', 'Psat3g139080' => 'psa', 'Psat5g285080' => 'psa', 'Psat6g157760' => 'psa', 'Psat6g208440' => 'psa', 'Psat7g215320' => 'psa', 'Psat7g215400' => 'psa', 'Psat7g235600' => 'psa', 'Psat7g235760' => 'psa', 'PSO063G4603' => 'pso', 'PSO210G0182' => 'pso', 'PSO210G0196' => 'pso', 'PSO339G0394' => 'pso', 'PSO339G4127' => 'pso', 'PSO513G0064' => 'pso', 'PSO761G0079' => 'pso', 'QL01p031003' => 'qlo', 'QL01p031078' => 'qlo', 'QL06p003004' => 'qlo', 'QL07p048731' => 'qlo', 'QL09p037427' => 'qlo', 'RcHm_v2.0_Chr3g0466361' => 'rch', 'RcHm_v2.0_Chr3g0485571' => 'rch', 'RcHm_v2.0_Chr4g0416551' => 'rch', 'RcHm_v2.0_Chr5g0065831' => 'rch', 'Rhsim01G0230500' => 'rsi', 'Rhsim05G0194000' => 'rsi', 'Rhsim08G0250400' => 'rsi', 'Sabra02G0131000' => 'sbr', 'Sabra06G0066300' => 'sbr', 'Sabra08G0115500' => 'sbr', 'Sabra09G0023900' => 'sbr', 'Sabra10G0054000' => 'sbr', 'Sabra14G0081500' => 'sbr', 'Sabra16G0147100' => 'sbr', 'SalBow2G2957' => 'sbo', 'SalBow4G3320' => 'sbo', 'SalBow8G1894' => 'sbo', 'Sc07g0007950' => 'sci', 'Sc12g0001360' => 'sci', 'Sc13g0004330' => 'sci', 'Sc20g0005010' => 'sci', 'Sed0000361' => 'sed', 'Sed0001706' => 'sed', 'Sed0002422' => 'sed', 'Sed0004029' => 'sed', 'Sed0004602' => 'sed', 'Sed0004943' => 'sed', 'Sed0008646' => 'sed', 'Sed0023313' => 'sed', 'Sed0024843' => 'sed', 'SEGI_00081' => 'sgi', 'SEGI_00947' => 'sgi', 'SEGI_04046' => 'sgi', 'SEGI_06880' => 'sgi', 'SEGI_09736' => 'sgi', 'SEGI_12741' => 'sgi', 'SEGI_14530' => 'sgi', 'SEGI_20705' => 'sgi', 'SEGI_26088' => 'sgi', 'SEGI_28323' => 'sgi', 'SEGI_33343' => 'sgi', 'SGA_v2.0_scaffold126G33775' => 'sas', 'SGA_v2.0_scaffold2G01337' => 'sas', 'SGA_v2.0_scaffold38G15006' => 'sas', 'SGA_v2.0_scaffold39G15264' => 'sas', 'SGA_v2.0_scaffold453G51880' => 'sas', 'SHI12696' => 'shi', 'SMO367G1096' => 'smo', 'Solyc01g068630.3' => 'sly', 'Solyc05g011880.3' => 'sly', 'Solyc06g076300.3' => 'sly', 'Solyc09g010940.4' => 'sly', 'Solyc09g075890.3' => 'sly', 'Sopen01g030560' => 'spe', 'Sopen05g006630' => 'spe', 'Sopen06g032720' => 'spe', 'Sopen09g005660' => 'spe', 'Sopen09g030690' => 'spe', 'Sp4g14540' => 'spa', 'Sp4g20030' => 'spa', 'Sp5g01320' => 'spa', 'Sp6g21170' => 'spa', 'Sp6g21180' => 'spa', 'Sp6g21190' => 'spa', 'Sp6g40220' => 'spa', 'TAR362G0122' => 'tar', 'TAR362G1338' => 'tar', 'TAR369G0590' => 'tar', 'TAR371G0824' => 'tar', 'TAR622G1429' => 'tar', 'TAR623G0734' => 'tar', 'TAR625G0441' => 'tar', 'TAR629G0976' => 'tar', 'TAR633G1195' => 'tar', 'TAR636G2660' => 'tar', 'THA.LOC104799440' => 'tha', 'THA.LOC104800966' => 'tha', 'THA.LOC104806559' => 'tha', 'THA.LOC104810765' => 'tha', 'THA.LOC104816266' => 'tha', 'THA.LOC104817419' => 'tha', 'THA.LOC104827021' => 'tha', 'Thecc.01G327400' => 'tca', 'Thecc.04G229200' => 'tca', 'Thecc.05G037400' => 'tca', 'Thecc.09G318600' => 'tca', 'Thecc.09G318700' => 'tca', 'Thhalv10006238m.g' => 'esa', 'Thhalv10014321m.g' => 'esa', 'Thhalv10014335m.g' => 'esa', 'Thhalv10015826m.g' => 'esa', 'Thhalv10017107m.g' => 'esa', 'Thhalv10017180m.g' => 'esa', 'Thhalv10029339m.g' => 'esa', 'TPR.G1699' => 'tpr', 'TPR.G23609' => 'tpr', 'TPR.G3081' => 'tpr', 'TPR.G40397' => 'tpr', 'TPR.G5522' => 'tpr', 'TPR.G5618' => 'tpr', 'TPR.G5626' => 'tpr', 'TWI09G1632' => 'twi', 'TWI23G1230' => 'twi', 'TWI53G1064' => 'twi', 'TWI59G0751' => 'twi', 'TWI74G0947' => 'twi', 'TWI77G0337' => 'twi', 'TWI79G1254' => 'twi', 'unitig_0.g2341' => 'ugi', 'unitig_26.g10006' => 'ugi', 'unitig_26.g10008' => 'ugi', 'unitig_26.g9192' => 'ugi', 'vmacro14547' => 'vma', 'vmacro15333' => 'vma', 'vmacro18743' => 'vma', 'vmacro20166' => 'vma', 'VMungo0331G0523' => 'vmu', 'VMungo0331G1202' => 'vmu', 'VMungo0720G1228' => 'vmu', 'VMungo0720G1514' => 'vmu', 'VMungo1080G0169' => 'vmu', 'VMungo1127G1475' => 'vmu', 'VMungo1383G1208' => 'vmu', 'VMungo1383G1698' => 'vmu', 'Zm00001eb012270' => 'zma', 'Zm00001eb054100' => 'zma', 'Zm00001eb063350' => 'zma', 'Zm00001eb328560' => 'zma', 'Zm00001eb342820' => 'zma', 'Zm00001eb362210' => 'zma', 'Zm00001eb397730' => 'zma', 'Zm00001eb399750' => 'zma' ) $gf_id = 'HOM05D000959' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000959' ) $data_identifier = 'HOM05D000959' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 5, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 5, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 10, 'mbi' => (int) 3, 'mco' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 2, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 3, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 11, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399750' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000959', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '622', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p07100' => 'bna', 'A03p11720' => 'bna', 'A05p08300' => 'bna', 'A05p13380' => 'bna', 'A09p54130' => 'bna', 'A10p16690' => 'bna', 'A10p16700' => 'bna', 'A10p33390' => 'bna', 'Aa31LG10G16020' => 'aar', 'Aa31LG1G11810' => 'aar', 'Aa31LG1G11830' => 'aar', 'Aa31LG1G22510' => 'aar', 'Aa31LG5G4890' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5793' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2310' => 'aag', 'Actinidia08499' => 'ach', 'Actinidia11262' => 'ach', 'Actinidia23926' => 'ach', 'Actinidia34420' => 'ach', 'Actinidia36970' => 'ach', 'Ah.02g111220' => 'amhyb', 'Ah.15g097750' => 'amhyb', 'AL4G27500' => 'aly', 'AL6G11470' => 'aly', 'AL8G35950' => 'aly', 'AL8G35960' => 'aly', 'AL8G35970' => 'aly', 'Aqoxy1G00912' => 'aox', 'Aqoxy2G02253' => 'aox', 'Aqoxy2G02411' => 'aox', 'Aqoxy5G00485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BZ66YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K8ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM4FUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6BF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HFV7XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25JBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0YNNV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MAKK6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P70IT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP2Z6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V61LZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YWP64R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3S9AI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7PGHH' => 'arhy', 'AT2G32150' => 'ath', 'AT3G62040' => 'ath', 'AT5G02230' => 'ath', 'AT5G59480' => 'ath', 'AT5G59490' => 'ath', 'ATR0332G060' => 'atr', 'ATR0559G190' => 'atr', 'ATR0693G294' => 'atr', 'Atru.chr3.3975' => 'acertr', 'Atru.chr3.3976' => 'acertr', 'Atru.chr3.3977' => 'acertr', 'Atru.chr4.2498' => 'acertr', 'Atru.chr5.838' => 'acertr', 'Atru.chr8.1990' => 'acertr', 'Atru.chr8.1991' => 'acertr', 'Atru.chr8.1992' => 'acertr', 'AUR62001759' => 'cqu', 'AUR62009545' => 'cqu', 'AUR62010474' => 'cqu', 'AUR62025820' => 'cqu', 'AUR62030422' => 'cqu', 'AUR62033605' => 'cqu', 'AUR62038615' => 'cqu', 'AUR62041347' => 'cqu', 'BcaB01g04574' => 'bca', 'BcaB02g09263' => 'bca', 'BcaB02g10453' => 'bca', 'BcaB05g22513' => 'bca', 'BcaB08g36253' => 'bca', 'BcaB08g36254' => 'bca', 'BcaC01g06519' => 'bca', 'BcaC02g11889' => 'bca', 'BcaC03g14010' => 'bca', 'BcaC03g18439' => 'bca', 'BcaC04g19765' => 'bca', 'BcaC09g48432' => 'bca', 'BcaNung07302' => 'bca', 'BolC2t06040H' => 'bol', 'BolC2t07346H' => 'bol', 'BolC3t13817H' => 'bol', 'BolC4t22625H' => 'bol', 'BolC4t23297H' => 'bol', 'BolC8t51278H' => 'bol', 'BolC9t58050H' => 'bol', 'BolC9t58051H' => 'bol', 'BolC9t60163H' => 'bol', 'BraA02t04712Z' => 'bra', 'BraA02t05791Z' => 'bra', 'BraA03t10483Z' => 'bra', 'BraA05t19795Z' => 'bra', 'BraA05t20276Z' => 'bra', 'BraA09t40827Z' => 'bra', 'BraA10t43750Z' => 'bra', 'BraA10t43751Z' => 'bra', 'BraA10t45370Z' => 'bra', 'C02p00400' => 'bna', 'C02p12460' => 'bna', 'C03p13680' => 'bna', 'C04p10270' => 'bna', 'C04p17500' => 'bna', 'C08p37010' => 'bna', 'C09p51880' => 'bna', 'C09p51890' => 'bna', 'C09p74300' => 'bna', 'CAN.G179.26' => 'can', 'CAN.G3384.1' => 'can', 'CAN.G394.68' => 'can', 'CAN.G907.13' => 'can', 'CANSAT11G0012' => 'cansat', 'CANSAT25G1586' => 'cansat', 'CANSAT35G0735' => 'cansat', 'CANSAT54G0556' => 'cansat', 'CANSAT64G0356' => 'cansat', 'CANSAT78G2042' => 'cansat', 'CARHR125920' => 'chi', 'CARHR131910' => 'chi', 'CARHR172390' => 'chi', 'CARHR211140' => 'chi', 'CARHR285850' => 'chi', 'CARHR285860' => 'chi', 'Carub.0004s1347' => 'cru', 'Carub.0004s1960' => 'cru', 'Carub.0005s2880' => 'cru', 'Carub.0006s0107' => 'cru', 'Carub.0008s2015' => 'cru', 'Carub.0008s2016' => 'cru', 'Carub.0008s2017' => 'cru', 'Ca_01315_v3' => 'car', 'Ca_05063_v3' => 'car', 'Ca_10231_v3' => 'car', 'Ca_10913_v3' => 'car', 'Ca_19156_v3' => 'car', 'Ca_23644_v3' => 'car', 'Ca_26735_v3' => 'car', 'Cc01_g13130' => 'ccan', 'Cc02_g21690' => 'ccan', 'Cc03_g03600' => 'ccan', 'Cc06_g02510' => 'ccan', 'CDE02G1265' => 'cde', 'CDE05G0415' => 'cde', 'CDE08G1082' => 'cde', 'Cfa005780' => 'cfa', 'Cfa011522' => 'cfa', 'Cfa011523' => 'cfa', 'Cfa015627' => 'cfa', 'Cfa017359' => 'cfa', 'Ciclev10005687m.g' => 'ccl', 'Ciclev10012173m.g' => 'ccl', 'Ciclev10021621m.g' => 'ccl', 'Ciclev10028968m.g' => 'ccl', 'Ciclev10029907m.g' => 'ccl', 'CiPaw.01G164800' => 'cil', 'CiPaw.07G083700' => 'cil', 'CiPaw.07G127000' => 'cil', 'CiPaw.07G136900' => 'cil', 'CiPaw.08G081700' => 'cil', 'CiPaw.09G194600' => 'cil', 'CiPaw.10G146500' => 'cil', 'CiPaw.13G091500' => 'cil', 'CiPaw.13G091600' => 'cil', 'ClCG00G003390' => 'cla', 'ClCG01G007220' => 'cla', 'ClCG03G001370' => 'cla', 'ClCG04G008100' => 'cla', 'ClCG06G006110' => 'cla', 'ClCG06G006130' => 'cla', 'ClCG10G021210' => 'cla', 'COL.COLO4_07648' => 'col', 'COL.COLO4_07650' => 'col', 'COL.COLO4_07651' => 'col', 'COL.COLO4_14780' => 'col', 'COL.COLO4_18546' => 'col', 'COL.COLO4_18547' => 'col', 'COL.COLO4_23103' => 'col', 'COL.COLO4_30419' => 'col', 'COL.COLO4_34232' => 'col', 'Cpa.g.sc169.20' => 'cpa', 'Cpa.g.sc57.45' => 'cpa', 'Cpa.g.sc58.124' => 'cpa', 'Cpa.g.sc58.125' => 'cpa', 'Cpa.g.sc81.118' => 'cpa', 'Cpa.g.sc81.119' => 'cpa', 'Cre12.g524700' => 'cre', 'CsaV3_1G034430' => 'csa', 'CsaV3_1G034440' => 'csa', 'CsaV3_1G034450' => 'csa', 'CsaV3_3G034830' => 'csa', 'CsaV3_4G025090' => 'csa', 'CsaV3_5G018660' => 'csa', 'CsaV3_6G038160' => 'csa', 'CSS0003447' => 'camsi', 'CSS0017840' => 'camsi', 'CSS0019260' => 'camsi', 'CSS0040375' => 'camsi', 'CSS0042533' => 'camsi', 'DCAR_005960' => 'dca', 'DCAR_012104' => 'dca', 'DCAR_012105' => 'dca', 'DCAR_012293' => 'dca', 'DCAR_015632' => 'dca', 'DCAR_024602' => 'dca', 'DCAR_028752' => 'dca', 'Dinv06261' => 'din', 'Dinv13982' => 'din', 'Dinv17029' => 'din', 'Dinv18463' => 'din', 'Dinv33181' => 'din', 'Dinv35585' => 'din', 'Dinv37161' => 'din', 'Dinv42977' => 'din', 'Dinv43122' => 'din', 'Dinv44517' => 'din', 'Duzib093G0256' => 'dzi', 'Duzib106G1254' => 'dzi', 'Duzib128G1789' => 'dzi', 'Duzib133G0633' => 'dzi', 'Duzib138G0510' => 'dzi', 'Duzib150G1084' => 'dzi', 'Duzib168G0488' => 'dzi', 'Duzib168G1523' => 'dzi', 'Duzib170G0133' => 'dzi', 'ECA234G1433' => 'eca', 'ECA236G1432' => 'eca', 'ECA236G2256' => 'eca', 'ECA236G2365' => 'eca', 'ECA236G4830' => 'eca', 'ECA248G1505' => 'eca', 'EL10Ac3g06431' => 'bvu', 'EL10Ac5g12577' => 'bvu', 'EL10Ac6g13533' => 'bvu', 'EL10Ac7g16045' => 'bvu', 'Eucgr.A01281' => 'egr', 'Eucgr.B02326' => 'egr', 'Eucgr.H03532' => 'egr', 'Eucgr.K00553' => 'egr', 'Eucgr.K03116' => 'egr', 'FAN02G3963' => 'fan', 'FAN05G0438' => 'fan', 'FAN09G2434' => 'fan', 'FAN12G3984' => 'fan', 'FAN14G0798' => 'fan', 'FAN17G0652' => 'fan', 'FAN19G1988' => 'fan', 'FAN22G0632' => 'fan', 'FAN23G0387' => 'fan', 'FAN26G1323' => 'fan', 'FAN28G0666' => 'fan', 'FvH4_1g26080' => 'fve', 'FvH4_3g36780' => 'fve', 'FvH4_4g15270' => 'fve', 'FvH4_6g13490' => 'fve', 'Glyma.01G098700' => 'gma', 'Glyma.03G065900' => 'gma', 'Glyma.03G073754' => 'gma', 'Glyma.03G073758' => 'gma', 'Glyma.03G083200' => 'gma', 'Glyma.03G225500' => 'gma', 'Glyma.05G037766' => 'gma', 'Glyma.07G133500' => 'gma', 'Glyma.10G139400' => 'gma', 'Glyma.10G248900' => 'gma', 'Glyma.11G137800' => 'gma', 'Glyma.12G061300' => 'gma', 'Glyma.13G337900' => 'gma', 'Glyma.15G036600' => 'gma', 'Glyma.18G182800' => 'gma', 'Glyma.19G222500' => 'gma', 'Glyma.20G144800' => 'gma', 'Gohir.A01G222000' => 'ghi', 'Gohir.A03G044000' => 'ghi', 'Gohir.A03G044100' => 'ghi', 'Gohir.A04G083100' => 'ghi', 'Gohir.A07G127200' => 'ghi', 'Gohir.A07G132400' => 'ghi', 'Gohir.A08G000700' => 'ghi', 'Gohir.A11G327300' => 'ghi', 'Gohir.D01G211500' => 'ghi', 'Gohir.D03G123400' => 'ghi', 'Gohir.D03G123500' => 'ghi', 'Gohir.D04G121800' => 'ghi', 'Gohir.D07G131500' => 'ghi', 'Gohir.D07G136600' => 'ghi', 'Gohir.D08G011600' => 'ghi', 'Gohir.D11G346200' => 'ghi', 'Gorai.001G142800' => 'gra', 'Gorai.001G148700' => 'gra', 'Gorai.002G257300' => 'gra', 'Gorai.003G130000' => 'gra', 'Gorai.003G130100' => 'gra', 'Gorai.004G005300' => 'gra', 'Gorai.007G376500' => 'gra', 'Gorai.012G104700' => 'gra', 'GSVIVG01017946001' => 'vvi', 'GSVIVG01024928001' => 'vvi', 'GSVIVG01028227001' => 'vvi', 'GSVIVG01034151001' => 'vvi', 'HanXRQChr05g0135031' => 'han', 'HanXRQChr05g0135041' => 'han', 'HanXRQChr05g0140021' => 'han', 'HanXRQChr06g0178981' => 'han', 'HanXRQChr07g0188251' => 'han', 'HanXRQChr08g0235311' => 'han', 'HanXRQChr09g0271011' => 'han', 'HanXRQChr10g0293321' => 'han', 'HanXRQChr13g0388171' => 'han', 'Haze_00916' => 'cav', 'Haze_05063' => 'cav', 'Haze_20814' => 'cav', 'Haze_24128' => 'cav', 'Hma1.2p1_0745F.1_g212010' => 'hma', 'Hma1.2p1_0757F.1_g213260' => 'hma', 'Hma1.2p1_0936F.1_g238840' => 'hma', 'Hma1.2p1_1735F.1_g299890' => 'hma', 'Hma1.2p1_1861F.1_g305685' => 'hma', 'HPP92_003397' => 'vpl', 'HPP92_012597' => 'vpl', 'HPP92_015520' => 'vpl', 'HPP92_015539' => 'vpl', 'HPP92_020373' => 'vpl', 'Hund04938' => 'sun', 'Hund10677' => 'sun', 'Hund11033' => 'sun', 'Hund12155' => 'sun', 'Lalb_Chr01g0022551' => 'lal', 'Lalb_Chr03g0042341' => 'lal', 'Lalb_Chr07g0192931' => 'lal', 'Lalb_Chr12g0209551' => 'lal', 'Lalb_Chr19g0125251' => 'lal', 'Lalb_Chr19g0137891' => 'lal', 'Lalb_Chr21g0304641' => 'lal', 'Lalb_Chr21g0309881' => 'lal', 'Lj1A5T12' => 'lonja', 'Lj1C148G10' => 'lonja', 'Lj2A93T83' => 'lonja', 'Lj3A738G68' => 'lonja', 'Lj3C966T1' => 'lonja', 'Lj3g0018958' => 'lja', 'Lj3g0021831' => 'lja', 'Lj3g0025443' => 'lja', 'Lj4g0026809' => 'lja', 'Lj5g0012558' => 'lja', 'Lj5g0021586' => 'lja', 'Lsat_1_v5_gn_5_156840' => 'lsa', 'Lsat_1_v5_gn_8_73460' => 'lsa', 'Lsat_1_v5_gn_8_73481' => 'lsa', 'Lsat_1_v5_gn_9_31601' => 'lsa', 'Lsat_1_v5_gn_9_77320' => 'lsa', 'Manes.01G171300' => 'mes', 'Manes.01G171400' => 'mes', 'Manes.01G236100' => 'mes', 'Manes.02G130500' => 'mes', 'Manes.02G130600' => 'mes', 'Manes.03G180200' => 'mes', 'Manes.05G007000' => 'mes', 'Manes.08G084400' => 'mes', 'Manes.09G092600' => 'mes', 'Manes.15G027900' => 'mes', 'MBI04_g40948_MAGBIO' => 'mbi', 'MBI14_g12123_MAGBIO' => 'mbi', 'MBI18_g28915_MAGBIO' => 'mbi', 'MCO09G053' => 'mco', 'MCO11G782' => 'mco', 'MCO15G215' => 'mco', 'MD03G1088500' => 'mdo', 'MD03G1088600' => 'mdo', 'MD04G1130800' => 'mdo', 'MD09G1291700' => 'mdo', 'MD11G1097500' => 'mdo', 'MD11G1097600' => 'mdo', 'MD12G1143900' => 'mdo', 'MD13G1191400' => 'mdo', 'MD16G1191500' => 'mdo', 'Medtr1g085570' => 'mtr', 'Medtr1g104610' => 'mtr', 'Medtr2g097520' => 'mtr', 'Medtr4g021800' => 'mtr', 'Medtr4g021825' => 'mtr', 'Medtr4g064270' => 'mtr', 'Medtr4g064380' => 'mtr', 'Medtr7g062150' => 'mtr', 'MELO3C003138.2' => 'cme', 'MELO3C005187.2' => 'cme', 'MELO3C009252.2' => 'cme', 'MELO3C014481.2' => 'cme', 'MELO3C020616.2' => 'cme', 'MELO3C020617.2' => 'cme', 'MELO3C020618.2' => 'cme', 'Migut.G00328' => 'egut', 'Migut.J00320' => 'egut', 'Migut.L01000' => 'egut', 'Migut.L01953' => 'egut', 'MSTRG.10253' => 'ama', 'MSTRG.19077' => 'ama', 'MSTRG.26780' => 'ama', 'MSTRG.4023' => 'ama', 'MSTRG.5655' => 'ama', 'MSTRG.9992' => 'ama', 'Nitab4.5_0000043g0310' => 'nta', 'Nitab4.5_0000463g0080' => 'nta', 'Nitab4.5_0000705g0170' => 'nta', 'Nitab4.5_0001326g0060' => 'nta', 'Nitab4.5_0001628g0030' => 'nta', 'Nitab4.5_0002103g0110' => 'nta', 'Nitab4.5_0002946g0030' => 'nta', 'Nitab4.5_0004639g0030' => 'nta', 'Nn2g11149' => 'nnu', 'Nn2g13389' => 'nnu', 'Nn4g25326' => 'nnu', 'Nn4g26290' => 'nnu', 'Nn5g29865' => 'nnu', 'Oeu004163.1' => 'oeu', 'Oeu006901.1' => 'oeu', 'Oeu010096.1' => 'oeu', 'Oeu024340.1' => 'oeu', 'Oeu048369.1' => 'oeu', 'Os01g0973000' => 'osa', 'Os03g0273800' => 'osa', 'Os03g0701200' => 'osa', 'Os03g0834050' => 'osa', 'Os07g0634400' => 'osa', 'Peaxi162Scf00092g01414' => 'pax', 'Peaxi162Scf00165g00818' => 'pax', 'Peaxi162Scf00309g00516' => 'pax', 'Peaxi162Scf00774g00218' => 'pax', 'PGR004G1824' => 'pgr', 'PGR004G2606' => 'pgr', 'PGR031G2716' => 'pgr', 'PGR102G2460' => 'pgr', 'PGR142G2599' => 'pgr', 'PGSC0003DMG400000843' => 'stu', 'PGSC0003DMG400008829' => 'stu', 'PGSC0003DMG400030418' => 'stu', 'PGSC0003DMG400031834' => 'stu', 'PGSC0003DMG401028300' => 'stu', 'PGSC0003DMG402028300' => 'stu', 'Phvul.001G219300' => 'pvu', 'Phvul.007G056000' => 'pvu', 'Phvul.007G208000' => 'pvu', 'Phvul.008G119500' => 'pvu', 'Phvul.010G011200' => 'pvu', 'Phvul.010G014800' => 'pvu', 'Phvul.011G062900' => 'pvu', 'Phvul.L007043' => 'pvu', 'Potri.001G242300' => 'ptr', 'Potri.002G185300' => 'ptr', 'Potri.006G086900' => 'ptr', 'Potri.008G151700' => 'ptr', 'Potri.009G033500' => 'ptr', 'Potri.010G089300' => 'ptr', 'Potri.014G110800' => 'ptr', 'Pp3c27_8130' => 'ppa', 'Pp3c6_27410' => 'ppa', 'PRCOL_00001659' => 'pco', 'PRCOL_00001927' => 'pco', 'PRCOL_00003649' => 'pco', 'Prupe.1G011600' => 'ppe', 'Prupe.3G000800' => 'ppe', 'Prupe.3G001100' => 'ppe', 'Prupe.6G072700' => 'ppe', 'Prupe.6G072800' => 'ppe', 'Prupe.6G257300' => 'ppe', 'Prupe.8G033000' => 'ppe', 'Psat0s2633g0080' => 'psa', 'Psat0s3396g0080' => 'psa', 'Psat0s3396g0200' => 'psa', 'Psat3g139080' => 'psa', 'Psat5g285080' => 'psa', 'Psat6g157760' => 'psa', 'Psat6g208440' => 'psa', 'Psat7g215320' => 'psa', 'Psat7g215400' => 'psa', 'Psat7g235600' => 'psa', 'Psat7g235760' => 'psa', 'PSO063G4603' => 'pso', 'PSO210G0182' => 'pso', 'PSO210G0196' => 'pso', 'PSO339G0394' => 'pso', 'PSO339G4127' => 'pso', 'PSO513G0064' => 'pso', 'PSO761G0079' => 'pso', 'QL01p031003' => 'qlo', 'QL01p031078' => 'qlo', 'QL06p003004' => 'qlo', 'QL07p048731' => 'qlo', 'QL09p037427' => 'qlo', 'RcHm_v2.0_Chr3g0466361' => 'rch', 'RcHm_v2.0_Chr3g0485571' => 'rch', 'RcHm_v2.0_Chr4g0416551' => 'rch', 'RcHm_v2.0_Chr5g0065831' => 'rch', 'Rhsim01G0230500' => 'rsi', 'Rhsim05G0194000' => 'rsi', 'Rhsim08G0250400' => 'rsi', 'Sabra02G0131000' => 'sbr', 'Sabra06G0066300' => 'sbr', 'Sabra08G0115500' => 'sbr', 'Sabra09G0023900' => 'sbr', 'Sabra10G0054000' => 'sbr', 'Sabra14G0081500' => 'sbr', 'Sabra16G0147100' => 'sbr', 'SalBow2G2957' => 'sbo', 'SalBow4G3320' => 'sbo', 'SalBow8G1894' => 'sbo', 'Sc07g0007950' => 'sci', 'Sc12g0001360' => 'sci', 'Sc13g0004330' => 'sci', 'Sc20g0005010' => 'sci', 'Sed0000361' => 'sed', 'Sed0001706' => 'sed', 'Sed0002422' => 'sed', 'Sed0004029' => 'sed', 'Sed0004602' => 'sed', 'Sed0004943' => 'sed', 'Sed0008646' => 'sed', 'Sed0023313' => 'sed', 'Sed0024843' => 'sed', 'SEGI_00081' => 'sgi', 'SEGI_00947' => 'sgi', 'SEGI_04046' => 'sgi', 'SEGI_06880' => 'sgi', 'SEGI_09736' => 'sgi', 'SEGI_12741' => 'sgi', 'SEGI_14530' => 'sgi', 'SEGI_20705' => 'sgi', 'SEGI_26088' => 'sgi', 'SEGI_28323' => 'sgi', 'SEGI_33343' => 'sgi', 'SGA_v2.0_scaffold126G33775' => 'sas', 'SGA_v2.0_scaffold2G01337' => 'sas', 'SGA_v2.0_scaffold38G15006' => 'sas', 'SGA_v2.0_scaffold39G15264' => 'sas', 'SGA_v2.0_scaffold453G51880' => 'sas', 'SHI12696' => 'shi', 'SMO367G1096' => 'smo', 'Solyc01g068630.3' => 'sly', 'Solyc05g011880.3' => 'sly', 'Solyc06g076300.3' => 'sly', 'Solyc09g010940.4' => 'sly', 'Solyc09g075890.3' => 'sly', 'Sopen01g030560' => 'spe', 'Sopen05g006630' => 'spe', 'Sopen06g032720' => 'spe', 'Sopen09g005660' => 'spe', 'Sopen09g030690' => 'spe', 'Sp4g14540' => 'spa', 'Sp4g20030' => 'spa', 'Sp5g01320' => 'spa', 'Sp6g21170' => 'spa', 'Sp6g21180' => 'spa', 'Sp6g21190' => 'spa', 'Sp6g40220' => 'spa', 'TAR362G0122' => 'tar', 'TAR362G1338' => 'tar', 'TAR369G0590' => 'tar', 'TAR371G0824' => 'tar', 'TAR622G1429' => 'tar', 'TAR623G0734' => 'tar', 'TAR625G0441' => 'tar', 'TAR629G0976' => 'tar', 'TAR633G1195' => 'tar', 'TAR636G2660' => 'tar', 'THA.LOC104799440' => 'tha', 'THA.LOC104800966' => 'tha', 'THA.LOC104806559' => 'tha', 'THA.LOC104810765' => 'tha', 'THA.LOC104816266' => 'tha', 'THA.LOC104817419' => 'tha', 'THA.LOC104827021' => 'tha', 'Thecc.01G327400' => 'tca', 'Thecc.04G229200' => 'tca', 'Thecc.05G037400' => 'tca', 'Thecc.09G318600' => 'tca', 'Thecc.09G318700' => 'tca', 'Thhalv10006238m.g' => 'esa', 'Thhalv10014321m.g' => 'esa', 'Thhalv10014335m.g' => 'esa', 'Thhalv10015826m.g' => 'esa', 'Thhalv10017107m.g' => 'esa', 'Thhalv10017180m.g' => 'esa', 'Thhalv10029339m.g' => 'esa', 'TPR.G1699' => 'tpr', 'TPR.G23609' => 'tpr', 'TPR.G3081' => 'tpr', 'TPR.G40397' => 'tpr', 'TPR.G5522' => 'tpr', 'TPR.G5618' => 'tpr', 'TPR.G5626' => 'tpr', 'TWI09G1632' => 'twi', 'TWI23G1230' => 'twi', 'TWI53G1064' => 'twi', 'TWI59G0751' => 'twi', 'TWI74G0947' => 'twi', 'TWI77G0337' => 'twi', 'TWI79G1254' => 'twi', 'unitig_0.g2341' => 'ugi', 'unitig_26.g10006' => 'ugi', 'unitig_26.g10008' => 'ugi', 'unitig_26.g9192' => 'ugi', 'vmacro14547' => 'vma', 'vmacro15333' => 'vma', 'vmacro18743' => 'vma', 'vmacro20166' => 'vma', 'VMungo0331G0523' => 'vmu', 'VMungo0331G1202' => 'vmu', 'VMungo0720G1228' => 'vmu', 'VMungo0720G1514' => 'vmu', 'VMungo1080G0169' => 'vmu', 'VMungo1127G1475' => 'vmu', 'VMungo1383G1208' => 'vmu', 'VMungo1383G1698' => 'vmu', 'Zm00001eb012270' => 'zma', 'Zm00001eb054100' => 'zma', 'Zm00001eb063350' => 'zma', 'Zm00001eb328560' => 'zma', 'Zm00001eb342820' => 'zma', 'Zm00001eb362210' => 'zma', 'Zm00001eb397730' => 'zma', 'Zm00001eb399750' => 'zma' ), 'gf_id' => 'HOM05D000959', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000959' ), 'data_identifier' => 'HOM05D000959', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000959', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '622', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p07100' => 'bna', 'A03p11720' => 'bna', 'A05p08300' => 'bna', 'A05p13380' => 'bna', 'A09p54130' => 'bna', 'A10p16690' => 'bna', 'A10p16700' => 'bna', 'A10p33390' => 'bna', 'Aa31LG10G16020' => 'aar', 'Aa31LG1G11810' => 'aar', 'Aa31LG1G11830' => 'aar', 'Aa31LG1G22510' => 'aar', 'Aa31LG5G4890' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5793' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2310' => 'aag', 'Actinidia08499' => 'ach', 'Actinidia11262' => 'ach', 'Actinidia23926' => 'ach', 'Actinidia34420' => 'ach', 'Actinidia36970' => 'ach', 'Ah.02g111220' => 'amhyb', 'Ah.15g097750' => 'amhyb', 'AL4G27500' => 'aly', 'AL6G11470' => 'aly', 'AL8G35950' => 'aly', 'AL8G35960' => 'aly', 'AL8G35970' => 'aly', 'Aqoxy1G00912' => 'aox', 'Aqoxy2G02253' => 'aox', 'Aqoxy2G02411' => 'aox', 'Aqoxy5G00485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BZ66YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K8ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM4FUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6BF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HFV7XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25JBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0YNNV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MAKK6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P70IT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP2Z6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V61LZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YWP64R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3S9AI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7PGHH' => 'arhy', 'AT2G32150' => 'ath', 'AT3G62040' => 'ath', 'AT5G02230' => 'ath', 'AT5G59480' => 'ath', 'AT5G59490' => 'ath', 'ATR0332G060' => 'atr', 'ATR0559G190' => 'atr', 'ATR0693G294' => 'atr', 'Atru.chr3.3975' => 'acertr', 'Atru.chr3.3976' => 'acertr', 'Atru.chr3.3977' => 'acertr', 'Atru.chr4.2498' => 'acertr', 'Atru.chr5.838' => 'acertr', 'Atru.chr8.1990' => 'acertr', 'Atru.chr8.1991' => 'acertr', 'Atru.chr8.1992' => 'acertr', 'AUR62001759' => 'cqu', 'AUR62009545' => 'cqu', 'AUR62010474' => 'cqu', 'AUR62025820' => 'cqu', 'AUR62030422' => 'cqu', 'AUR62033605' => 'cqu', 'AUR62038615' => 'cqu', 'AUR62041347' => 'cqu', 'BcaB01g04574' => 'bca', 'BcaB02g09263' => 'bca', 'BcaB02g10453' => 'bca', 'BcaB05g22513' => 'bca', 'BcaB08g36253' => 'bca', 'BcaB08g36254' => 'bca', 'BcaC01g06519' => 'bca', 'BcaC02g11889' => 'bca', 'BcaC03g14010' => 'bca', 'BcaC03g18439' => 'bca', 'BcaC04g19765' => 'bca', 'BcaC09g48432' => 'bca', 'BcaNung07302' => 'bca', 'BolC2t06040H' => 'bol', 'BolC2t07346H' => 'bol', 'BolC3t13817H' => 'bol', 'BolC4t22625H' => 'bol', 'BolC4t23297H' => 'bol', 'BolC8t51278H' => 'bol', 'BolC9t58050H' => 'bol', 'BolC9t58051H' => 'bol', 'BolC9t60163H' => 'bol', 'BraA02t04712Z' => 'bra', 'BraA02t05791Z' => 'bra', 'BraA03t10483Z' => 'bra', 'BraA05t19795Z' => 'bra', 'BraA05t20276Z' => 'bra', 'BraA09t40827Z' => 'bra', 'BraA10t43750Z' => 'bra', 'BraA10t43751Z' => 'bra', 'BraA10t45370Z' => 'bra', 'C02p00400' => 'bna', 'C02p12460' => 'bna', 'C03p13680' => 'bna', 'C04p10270' => 'bna', 'C04p17500' => 'bna', 'C08p37010' => 'bna', 'C09p51880' => 'bna', 'C09p51890' => 'bna', 'C09p74300' => 'bna', 'CAN.G179.26' => 'can', 'CAN.G3384.1' => 'can', 'CAN.G394.68' => 'can', 'CAN.G907.13' => 'can', 'CANSAT11G0012' => 'cansat', 'CANSAT25G1586' => 'cansat', 'CANSAT35G0735' => 'cansat', 'CANSAT54G0556' => 'cansat', 'CANSAT64G0356' => 'cansat', 'CANSAT78G2042' => 'cansat', 'CARHR125920' => 'chi', 'CARHR131910' => 'chi', 'CARHR172390' => 'chi', 'CARHR211140' => 'chi', 'CARHR285850' => 'chi', 'CARHR285860' => 'chi', 'Carub.0004s1347' => 'cru', 'Carub.0004s1960' => 'cru', 'Carub.0005s2880' => 'cru', 'Carub.0006s0107' => 'cru', 'Carub.0008s2015' => 'cru', 'Carub.0008s2016' => 'cru', 'Carub.0008s2017' => 'cru', 'Ca_01315_v3' => 'car', 'Ca_05063_v3' => 'car', 'Ca_10231_v3' => 'car', 'Ca_10913_v3' => 'car', 'Ca_19156_v3' => 'car', 'Ca_23644_v3' => 'car', 'Ca_26735_v3' => 'car', 'Cc01_g13130' => 'ccan', 'Cc02_g21690' => 'ccan', 'Cc03_g03600' => 'ccan', 'Cc06_g02510' => 'ccan', 'CDE02G1265' => 'cde', 'CDE05G0415' => 'cde', 'CDE08G1082' => 'cde', 'Cfa005780' => 'cfa', 'Cfa011522' => 'cfa', 'Cfa011523' => 'cfa', 'Cfa015627' => 'cfa', 'Cfa017359' => 'cfa', 'Ciclev10005687m.g' => 'ccl', 'Ciclev10012173m.g' => 'ccl', 'Ciclev10021621m.g' => 'ccl', 'Ciclev10028968m.g' => 'ccl', 'Ciclev10029907m.g' => 'ccl', 'CiPaw.01G164800' => 'cil', 'CiPaw.07G083700' => 'cil', 'CiPaw.07G127000' => 'cil', 'CiPaw.07G136900' => 'cil', 'CiPaw.08G081700' => 'cil', 'CiPaw.09G194600' => 'cil', 'CiPaw.10G146500' => 'cil', 'CiPaw.13G091500' => 'cil', 'CiPaw.13G091600' => 'cil', 'ClCG00G003390' => 'cla', 'ClCG01G007220' => 'cla', 'ClCG03G001370' => 'cla', 'ClCG04G008100' => 'cla', 'ClCG06G006110' => 'cla', 'ClCG06G006130' => 'cla', 'ClCG10G021210' => 'cla', 'COL.COLO4_07648' => 'col', 'COL.COLO4_07650' => 'col', 'COL.COLO4_07651' => 'col', 'COL.COLO4_14780' => 'col', 'COL.COLO4_18546' => 'col', 'COL.COLO4_18547' => 'col', 'COL.COLO4_23103' => 'col', 'COL.COLO4_30419' => 'col', 'COL.COLO4_34232' => 'col', 'Cpa.g.sc169.20' => 'cpa', 'Cpa.g.sc57.45' => 'cpa', 'Cpa.g.sc58.124' => 'cpa', 'Cpa.g.sc58.125' => 'cpa', 'Cpa.g.sc81.118' => 'cpa', 'Cpa.g.sc81.119' => 'cpa', 'Cre12.g524700' => 'cre', 'CsaV3_1G034430' => 'csa', 'CsaV3_1G034440' => 'csa', 'CsaV3_1G034450' => 'csa', 'CsaV3_3G034830' => 'csa', 'CsaV3_4G025090' => 'csa', 'CsaV3_5G018660' => 'csa', 'CsaV3_6G038160' => 'csa', 'CSS0003447' => 'camsi', 'CSS0017840' => 'camsi', 'CSS0019260' => 'camsi', 'CSS0040375' => 'camsi', 'CSS0042533' => 'camsi', 'DCAR_005960' => 'dca', 'DCAR_012104' => 'dca', 'DCAR_012105' => 'dca', 'DCAR_012293' => 'dca', 'DCAR_015632' => 'dca', 'DCAR_024602' => 'dca', 'DCAR_028752' => 'dca', 'Dinv06261' => 'din', 'Dinv13982' => 'din', 'Dinv17029' => 'din', 'Dinv18463' => 'din', 'Dinv33181' => 'din', 'Dinv35585' => 'din', 'Dinv37161' => 'din', 'Dinv42977' => 'din', 'Dinv43122' => 'din', 'Dinv44517' => 'din', 'Duzib093G0256' => 'dzi', 'Duzib106G1254' => 'dzi', 'Duzib128G1789' => 'dzi', 'Duzib133G0633' => 'dzi', 'Duzib138G0510' => 'dzi', 'Duzib150G1084' => 'dzi', 'Duzib168G0488' => 'dzi', 'Duzib168G1523' => 'dzi', 'Duzib170G0133' => 'dzi', 'ECA234G1433' => 'eca', 'ECA236G1432' => 'eca', 'ECA236G2256' => 'eca', 'ECA236G2365' => 'eca', 'ECA236G4830' => 'eca', 'ECA248G1505' => 'eca', 'EL10Ac3g06431' => 'bvu', 'EL10Ac5g12577' => 'bvu', 'EL10Ac6g13533' => 'bvu', 'EL10Ac7g16045' => 'bvu', 'Eucgr.A01281' => 'egr', 'Eucgr.B02326' => 'egr', 'Eucgr.H03532' => 'egr', 'Eucgr.K00553' => 'egr', 'Eucgr.K03116' => 'egr', 'FAN02G3963' => 'fan', 'FAN05G0438' => 'fan', 'FAN09G2434' => 'fan', 'FAN12G3984' => 'fan', 'FAN14G0798' => 'fan', 'FAN17G0652' => 'fan', 'FAN19G1988' => 'fan', 'FAN22G0632' => 'fan', 'FAN23G0387' => 'fan', 'FAN26G1323' => 'fan', 'FAN28G0666' => 'fan', 'FvH4_1g26080' => 'fve', 'FvH4_3g36780' => 'fve', 'FvH4_4g15270' => 'fve', 'FvH4_6g13490' => 'fve', 'Glyma.01G098700' => 'gma', 'Glyma.03G065900' => 'gma', 'Glyma.03G073754' => 'gma', 'Glyma.03G073758' => 'gma', 'Glyma.03G083200' => 'gma', 'Glyma.03G225500' => 'gma', 'Glyma.05G037766' => 'gma', 'Glyma.07G133500' => 'gma', 'Glyma.10G139400' => 'gma', 'Glyma.10G248900' => 'gma', 'Glyma.11G137800' => 'gma', 'Glyma.12G061300' => 'gma', 'Glyma.13G337900' => 'gma', 'Glyma.15G036600' => 'gma', 'Glyma.18G182800' => 'gma', 'Glyma.19G222500' => 'gma', 'Glyma.20G144800' => 'gma', 'Gohir.A01G222000' => 'ghi', 'Gohir.A03G044000' => 'ghi', 'Gohir.A03G044100' => 'ghi', 'Gohir.A04G083100' => 'ghi', 'Gohir.A07G127200' => 'ghi', 'Gohir.A07G132400' => 'ghi', 'Gohir.A08G000700' => 'ghi', 'Gohir.A11G327300' => 'ghi', 'Gohir.D01G211500' => 'ghi', 'Gohir.D03G123400' => 'ghi', 'Gohir.D03G123500' => 'ghi', 'Gohir.D04G121800' => 'ghi', 'Gohir.D07G131500' => 'ghi', 'Gohir.D07G136600' => 'ghi', 'Gohir.D08G011600' => 'ghi', 'Gohir.D11G346200' => 'ghi', 'Gorai.001G142800' => 'gra', 'Gorai.001G148700' => 'gra', 'Gorai.002G257300' => 'gra', 'Gorai.003G130000' => 'gra', 'Gorai.003G130100' => 'gra', 'Gorai.004G005300' => 'gra', 'Gorai.007G376500' => 'gra', 'Gorai.012G104700' => 'gra', 'GSVIVG01017946001' => 'vvi', 'GSVIVG01024928001' => 'vvi', 'GSVIVG01028227001' => 'vvi', 'GSVIVG01034151001' => 'vvi', 'HanXRQChr05g0135031' => 'han', 'HanXRQChr05g0135041' => 'han', 'HanXRQChr05g0140021' => 'han', 'HanXRQChr06g0178981' => 'han', 'HanXRQChr07g0188251' => 'han', 'HanXRQChr08g0235311' => 'han', 'HanXRQChr09g0271011' => 'han', 'HanXRQChr10g0293321' => 'han', 'HanXRQChr13g0388171' => 'han', 'Haze_00916' => 'cav', 'Haze_05063' => 'cav', 'Haze_20814' => 'cav', 'Haze_24128' => 'cav', 'Hma1.2p1_0745F.1_g212010' => 'hma', 'Hma1.2p1_0757F.1_g213260' => 'hma', 'Hma1.2p1_0936F.1_g238840' => 'hma', 'Hma1.2p1_1735F.1_g299890' => 'hma', 'Hma1.2p1_1861F.1_g305685' => 'hma', 'HPP92_003397' => 'vpl', 'HPP92_012597' => 'vpl', 'HPP92_015520' => 'vpl', 'HPP92_015539' => 'vpl', 'HPP92_020373' => 'vpl', 'Hund04938' => 'sun', 'Hund10677' => 'sun', 'Hund11033' => 'sun', 'Hund12155' => 'sun', 'Lalb_Chr01g0022551' => 'lal', 'Lalb_Chr03g0042341' => 'lal', 'Lalb_Chr07g0192931' => 'lal', 'Lalb_Chr12g0209551' => 'lal', 'Lalb_Chr19g0125251' => 'lal', 'Lalb_Chr19g0137891' => 'lal', 'Lalb_Chr21g0304641' => 'lal', 'Lalb_Chr21g0309881' => 'lal', 'Lj1A5T12' => 'lonja', 'Lj1C148G10' => 'lonja', 'Lj2A93T83' => 'lonja', 'Lj3A738G68' => 'lonja', 'Lj3C966T1' => 'lonja', 'Lj3g0018958' => 'lja', 'Lj3g0021831' => 'lja', 'Lj3g0025443' => 'lja', 'Lj4g0026809' => 'lja', 'Lj5g0012558' => 'lja', 'Lj5g0021586' => 'lja', 'Lsat_1_v5_gn_5_156840' => 'lsa', 'Lsat_1_v5_gn_8_73460' => 'lsa', 'Lsat_1_v5_gn_8_73481' => 'lsa', 'Lsat_1_v5_gn_9_31601' => 'lsa', 'Lsat_1_v5_gn_9_77320' => 'lsa', 'Manes.01G171300' => 'mes', 'Manes.01G171400' => 'mes', 'Manes.01G236100' => 'mes', 'Manes.02G130500' => 'mes', 'Manes.02G130600' => 'mes', 'Manes.03G180200' => 'mes', 'Manes.05G007000' => 'mes', 'Manes.08G084400' => 'mes', 'Manes.09G092600' => 'mes', 'Manes.15G027900' => 'mes', 'MBI04_g40948_MAGBIO' => 'mbi', 'MBI14_g12123_MAGBIO' => 'mbi', 'MBI18_g28915_MAGBIO' => 'mbi', 'MCO09G053' => 'mco', 'MCO11G782' => 'mco', 'MCO15G215' => 'mco', 'MD03G1088500' => 'mdo', 'MD03G1088600' => 'mdo', 'MD04G1130800' => 'mdo', 'MD09G1291700' => 'mdo', 'MD11G1097500' => 'mdo', 'MD11G1097600' => 'mdo', 'MD12G1143900' => 'mdo', 'MD13G1191400' => 'mdo', 'MD16G1191500' => 'mdo', 'Medtr1g085570' => 'mtr', 'Medtr1g104610' => 'mtr', 'Medtr2g097520' => 'mtr', 'Medtr4g021800' => 'mtr', 'Medtr4g021825' => 'mtr', 'Medtr4g064270' => 'mtr', 'Medtr4g064380' => 'mtr', 'Medtr7g062150' => 'mtr', 'MELO3C003138.2' => 'cme', 'MELO3C005187.2' => 'cme', 'MELO3C009252.2' => 'cme', 'MELO3C014481.2' => 'cme', 'MELO3C020616.2' => 'cme', 'MELO3C020617.2' => 'cme', 'MELO3C020618.2' => 'cme', 'Migut.G00328' => 'egut', 'Migut.J00320' => 'egut', 'Migut.L01000' => 'egut', 'Migut.L01953' => 'egut', 'MSTRG.10253' => 'ama', 'MSTRG.19077' => 'ama', 'MSTRG.26780' => 'ama', 'MSTRG.4023' => 'ama', 'MSTRG.5655' => 'ama', 'MSTRG.9992' => 'ama', 'Nitab4.5_0000043g0310' => 'nta', 'Nitab4.5_0000463g0080' => 'nta', 'Nitab4.5_0000705g0170' => 'nta', 'Nitab4.5_0001326g0060' => 'nta', 'Nitab4.5_0001628g0030' => 'nta', 'Nitab4.5_0002103g0110' => 'nta', 'Nitab4.5_0002946g0030' => 'nta', 'Nitab4.5_0004639g0030' => 'nta', 'Nn2g11149' => 'nnu', 'Nn2g13389' => 'nnu', 'Nn4g25326' => 'nnu', 'Nn4g26290' => 'nnu', 'Nn5g29865' => 'nnu', 'Oeu004163.1' => 'oeu', 'Oeu006901.1' => 'oeu', 'Oeu010096.1' => 'oeu', 'Oeu024340.1' => 'oeu', 'Oeu048369.1' => 'oeu', 'Os01g0973000' => 'osa', 'Os03g0273800' => 'osa', 'Os03g0701200' => 'osa', 'Os03g0834050' => 'osa', 'Os07g0634400' => 'osa', 'Peaxi162Scf00092g01414' => 'pax', 'Peaxi162Scf00165g00818' => 'pax', 'Peaxi162Scf00309g00516' => 'pax', 'Peaxi162Scf00774g00218' => 'pax', 'PGR004G1824' => 'pgr', 'PGR004G2606' => 'pgr', 'PGR031G2716' => 'pgr', 'PGR102G2460' => 'pgr', 'PGR142G2599' => 'pgr', 'PGSC0003DMG400000843' => 'stu', 'PGSC0003DMG400008829' => 'stu', 'PGSC0003DMG400030418' => 'stu', 'PGSC0003DMG400031834' => 'stu', 'PGSC0003DMG401028300' => 'stu', 'PGSC0003DMG402028300' => 'stu', 'Phvul.001G219300' => 'pvu', 'Phvul.007G056000' => 'pvu', 'Phvul.007G208000' => 'pvu', 'Phvul.008G119500' => 'pvu', 'Phvul.010G011200' => 'pvu', 'Phvul.010G014800' => 'pvu', 'Phvul.011G062900' => 'pvu', 'Phvul.L007043' => 'pvu', 'Potri.001G242300' => 'ptr', 'Potri.002G185300' => 'ptr', 'Potri.006G086900' => 'ptr', 'Potri.008G151700' => 'ptr', 'Potri.009G033500' => 'ptr', 'Potri.010G089300' => 'ptr', 'Potri.014G110800' => 'ptr', 'Pp3c27_8130' => 'ppa', 'Pp3c6_27410' => 'ppa', 'PRCOL_00001659' => 'pco', 'PRCOL_00001927' => 'pco', 'PRCOL_00003649' => 'pco', 'Prupe.1G011600' => 'ppe', 'Prupe.3G000800' => 'ppe', 'Prupe.3G001100' => 'ppe', 'Prupe.6G072700' => 'ppe', 'Prupe.6G072800' => 'ppe', 'Prupe.6G257300' => 'ppe', 'Prupe.8G033000' => 'ppe', 'Psat0s2633g0080' => 'psa', 'Psat0s3396g0080' => 'psa', 'Psat0s3396g0200' => 'psa', 'Psat3g139080' => 'psa', 'Psat5g285080' => 'psa', 'Psat6g157760' => 'psa', 'Psat6g208440' => 'psa', 'Psat7g215320' => 'psa', 'Psat7g215400' => 'psa', 'Psat7g235600' => 'psa', 'Psat7g235760' => 'psa', 'PSO063G4603' => 'pso', 'PSO210G0182' => 'pso', 'PSO210G0196' => 'pso', 'PSO339G0394' => 'pso', 'PSO339G4127' => 'pso', 'PSO513G0064' => 'pso', 'PSO761G0079' => 'pso', 'QL01p031003' => 'qlo', 'QL01p031078' => 'qlo', 'QL06p003004' => 'qlo', 'QL07p048731' => 'qlo', 'QL09p037427' => 'qlo', 'RcHm_v2.0_Chr3g0466361' => 'rch', 'RcHm_v2.0_Chr3g0485571' => 'rch', 'RcHm_v2.0_Chr4g0416551' => 'rch', 'RcHm_v2.0_Chr5g0065831' => 'rch', 'Rhsim01G0230500' => 'rsi', 'Rhsim05G0194000' => 'rsi', 'Rhsim08G0250400' => 'rsi', 'Sabra02G0131000' => 'sbr', 'Sabra06G0066300' => 'sbr', 'Sabra08G0115500' => 'sbr', 'Sabra09G0023900' => 'sbr', 'Sabra10G0054000' => 'sbr', 'Sabra14G0081500' => 'sbr', 'Sabra16G0147100' => 'sbr', 'SalBow2G2957' => 'sbo', 'SalBow4G3320' => 'sbo', 'SalBow8G1894' => 'sbo', 'Sc07g0007950' => 'sci', 'Sc12g0001360' => 'sci', 'Sc13g0004330' => 'sci', 'Sc20g0005010' => 'sci', 'Sed0000361' => 'sed', 'Sed0001706' => 'sed', 'Sed0002422' => 'sed', 'Sed0004029' => 'sed', 'Sed0004602' => 'sed', 'Sed0004943' => 'sed', 'Sed0008646' => 'sed', 'Sed0023313' => 'sed', 'Sed0024843' => 'sed', 'SEGI_00081' => 'sgi', 'SEGI_00947' => 'sgi', 'SEGI_04046' => 'sgi', 'SEGI_06880' => 'sgi', 'SEGI_09736' => 'sgi', 'SEGI_12741' => 'sgi', 'SEGI_14530' => 'sgi', 'SEGI_20705' => 'sgi', 'SEGI_26088' => 'sgi', 'SEGI_28323' => 'sgi', 'SEGI_33343' => 'sgi', 'SGA_v2.0_scaffold126G33775' => 'sas', 'SGA_v2.0_scaffold2G01337' => 'sas', 'SGA_v2.0_scaffold38G15006' => 'sas', 'SGA_v2.0_scaffold39G15264' => 'sas', 'SGA_v2.0_scaffold453G51880' => 'sas', 'SHI12696' => 'shi', 'SMO367G1096' => 'smo', 'Solyc01g068630.3' => 'sly', 'Solyc05g011880.3' => 'sly', 'Solyc06g076300.3' => 'sly', 'Solyc09g010940.4' => 'sly', 'Solyc09g075890.3' => 'sly', 'Sopen01g030560' => 'spe', 'Sopen05g006630' => 'spe', 'Sopen06g032720' => 'spe', 'Sopen09g005660' => 'spe', 'Sopen09g030690' => 'spe', 'Sp4g14540' => 'spa', 'Sp4g20030' => 'spa', 'Sp5g01320' => 'spa', 'Sp6g21170' => 'spa', 'Sp6g21180' => 'spa', 'Sp6g21190' => 'spa', 'Sp6g40220' => 'spa', 'TAR362G0122' => 'tar', 'TAR362G1338' => 'tar', 'TAR369G0590' => 'tar', 'TAR371G0824' => 'tar', 'TAR622G1429' => 'tar', 'TAR623G0734' => 'tar', 'TAR625G0441' => 'tar', 'TAR629G0976' => 'tar', 'TAR633G1195' => 'tar', 'TAR636G2660' => 'tar', 'THA.LOC104799440' => 'tha', 'THA.LOC104800966' => 'tha', 'THA.LOC104806559' => 'tha', 'THA.LOC104810765' => 'tha', 'THA.LOC104816266' => 'tha', 'THA.LOC104817419' => 'tha', 'THA.LOC104827021' => 'tha', 'Thecc.01G327400' => 'tca', 'Thecc.04G229200' => 'tca', 'Thecc.05G037400' => 'tca', 'Thecc.09G318600' => 'tca', 'Thecc.09G318700' => 'tca', 'Thhalv10006238m.g' => 'esa', 'Thhalv10014321m.g' => 'esa', 'Thhalv10014335m.g' => 'esa', 'Thhalv10015826m.g' => 'esa', 'Thhalv10017107m.g' => 'esa', 'Thhalv10017180m.g' => 'esa', 'Thhalv10029339m.g' => 'esa', 'TPR.G1699' => 'tpr', 'TPR.G23609' => 'tpr', 'TPR.G3081' => 'tpr', 'TPR.G40397' => 'tpr', 'TPR.G5522' => 'tpr', 'TPR.G5618' => 'tpr', 'TPR.G5626' => 'tpr', 'TWI09G1632' => 'twi', 'TWI23G1230' => 'twi', 'TWI53G1064' => 'twi', 'TWI59G0751' => 'twi', 'TWI74G0947' => 'twi', 'TWI77G0337' => 'twi', 'TWI79G1254' => 'twi', 'unitig_0.g2341' => 'ugi', 'unitig_26.g10006' => 'ugi', 'unitig_26.g10008' => 'ugi', 'unitig_26.g9192' => 'ugi', 'vmacro14547' => 'vma', 'vmacro15333' => 'vma', 'vmacro18743' => 'vma', 'vmacro20166' => 'vma', 'VMungo0331G0523' => 'vmu', 'VMungo0331G1202' => 'vmu', 'VMungo0720G1228' => 'vmu', 'VMungo0720G1514' => 'vmu', 'VMungo1080G0169' => 'vmu', 'VMungo1127G1475' => 'vmu', 'VMungo1383G1208' => 'vmu', 'VMungo1383G1698' => 'vmu', 'Zm00001eb012270' => 'zma', 'Zm00001eb054100' => 'zma', 'Zm00001eb063350' => 'zma', 'Zm00001eb328560' => 'zma', 'Zm00001eb342820' => 'zma', 'Zm00001eb362210' => 'zma', 'Zm00001eb397730' => 'zma', 'Zm00001eb399750' => 'zma' ) $gf_id = 'HOM05D000959' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000959' ) $data_identifier = 'HOM05D000959' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 5, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 5, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 10, 'mbi' => (int) 3, 'mco' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 2, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 3, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 11, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399750' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000959', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '622', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p07100' => 'bna', 'A03p11720' => 'bna', 'A05p08300' => 'bna', 'A05p13380' => 'bna', 'A09p54130' => 'bna', 'A10p16690' => 'bna', 'A10p16700' => 'bna', 'A10p33390' => 'bna', 'Aa31LG10G16020' => 'aar', 'Aa31LG1G11810' => 'aar', 'Aa31LG1G11830' => 'aar', 'Aa31LG1G22510' => 'aar', 'Aa31LG5G4890' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5793' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2310' => 'aag', 'Actinidia08499' => 'ach', 'Actinidia11262' => 'ach', 'Actinidia23926' => 'ach', 'Actinidia34420' => 'ach', 'Actinidia36970' => 'ach', 'Ah.02g111220' => 'amhyb', 'Ah.15g097750' => 'amhyb', 'AL4G27500' => 'aly', 'AL6G11470' => 'aly', 'AL8G35950' => 'aly', 'AL8G35960' => 'aly', 'AL8G35970' => 'aly', 'Aqoxy1G00912' => 'aox', 'Aqoxy2G02253' => 'aox', 'Aqoxy2G02411' => 'aox', 'Aqoxy5G00485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BZ66YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K8ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM4FUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6BF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HFV7XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25JBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0YNNV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MAKK6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P70IT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP2Z6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V61LZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YWP64R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3S9AI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7PGHH' => 'arhy', 'AT2G32150' => 'ath', 'AT3G62040' => 'ath', 'AT5G02230' => 'ath', 'AT5G59480' => 'ath', 'AT5G59490' => 'ath', 'ATR0332G060' => 'atr', 'ATR0559G190' => 'atr', 'ATR0693G294' => 'atr', 'Atru.chr3.3975' => 'acertr', 'Atru.chr3.3976' => 'acertr', 'Atru.chr3.3977' => 'acertr', 'Atru.chr4.2498' => 'acertr', 'Atru.chr5.838' => 'acertr', 'Atru.chr8.1990' => 'acertr', 'Atru.chr8.1991' => 'acertr', 'Atru.chr8.1992' => 'acertr', 'AUR62001759' => 'cqu', 'AUR62009545' => 'cqu', 'AUR62010474' => 'cqu', 'AUR62025820' => 'cqu', 'AUR62030422' => 'cqu', 'AUR62033605' => 'cqu', 'AUR62038615' => 'cqu', 'AUR62041347' => 'cqu', 'BcaB01g04574' => 'bca', 'BcaB02g09263' => 'bca', 'BcaB02g10453' => 'bca', 'BcaB05g22513' => 'bca', 'BcaB08g36253' => 'bca', 'BcaB08g36254' => 'bca', 'BcaC01g06519' => 'bca', 'BcaC02g11889' => 'bca', 'BcaC03g14010' => 'bca', 'BcaC03g18439' => 'bca', 'BcaC04g19765' => 'bca', 'BcaC09g48432' => 'bca', 'BcaNung07302' => 'bca', 'BolC2t06040H' => 'bol', 'BolC2t07346H' => 'bol', 'BolC3t13817H' => 'bol', 'BolC4t22625H' => 'bol', 'BolC4t23297H' => 'bol', 'BolC8t51278H' => 'bol', 'BolC9t58050H' => 'bol', 'BolC9t58051H' => 'bol', 'BolC9t60163H' => 'bol', 'BraA02t04712Z' => 'bra', 'BraA02t05791Z' => 'bra', 'BraA03t10483Z' => 'bra', 'BraA05t19795Z' => 'bra', 'BraA05t20276Z' => 'bra', 'BraA09t40827Z' => 'bra', 'BraA10t43750Z' => 'bra', 'BraA10t43751Z' => 'bra', 'BraA10t45370Z' => 'bra', 'C02p00400' => 'bna', 'C02p12460' => 'bna', 'C03p13680' => 'bna', 'C04p10270' => 'bna', 'C04p17500' => 'bna', 'C08p37010' => 'bna', 'C09p51880' => 'bna', 'C09p51890' => 'bna', 'C09p74300' => 'bna', 'CAN.G179.26' => 'can', 'CAN.G3384.1' => 'can', 'CAN.G394.68' => 'can', 'CAN.G907.13' => 'can', 'CANSAT11G0012' => 'cansat', 'CANSAT25G1586' => 'cansat', 'CANSAT35G0735' => 'cansat', 'CANSAT54G0556' => 'cansat', 'CANSAT64G0356' => 'cansat', 'CANSAT78G2042' => 'cansat', 'CARHR125920' => 'chi', 'CARHR131910' => 'chi', 'CARHR172390' => 'chi', 'CARHR211140' => 'chi', 'CARHR285850' => 'chi', 'CARHR285860' => 'chi', 'Carub.0004s1347' => 'cru', 'Carub.0004s1960' => 'cru', 'Carub.0005s2880' => 'cru', 'Carub.0006s0107' => 'cru', 'Carub.0008s2015' => 'cru', 'Carub.0008s2016' => 'cru', 'Carub.0008s2017' => 'cru', 'Ca_01315_v3' => 'car', 'Ca_05063_v3' => 'car', 'Ca_10231_v3' => 'car', 'Ca_10913_v3' => 'car', 'Ca_19156_v3' => 'car', 'Ca_23644_v3' => 'car', 'Ca_26735_v3' => 'car', 'Cc01_g13130' => 'ccan', 'Cc02_g21690' => 'ccan', 'Cc03_g03600' => 'ccan', 'Cc06_g02510' => 'ccan', 'CDE02G1265' => 'cde', 'CDE05G0415' => 'cde', 'CDE08G1082' => 'cde', 'Cfa005780' => 'cfa', 'Cfa011522' => 'cfa', 'Cfa011523' => 'cfa', 'Cfa015627' => 'cfa', 'Cfa017359' => 'cfa', 'Ciclev10005687m.g' => 'ccl', 'Ciclev10012173m.g' => 'ccl', 'Ciclev10021621m.g' => 'ccl', 'Ciclev10028968m.g' => 'ccl', 'Ciclev10029907m.g' => 'ccl', 'CiPaw.01G164800' => 'cil', 'CiPaw.07G083700' => 'cil', 'CiPaw.07G127000' => 'cil', 'CiPaw.07G136900' => 'cil', 'CiPaw.08G081700' => 'cil', 'CiPaw.09G194600' => 'cil', 'CiPaw.10G146500' => 'cil', 'CiPaw.13G091500' => 'cil', 'CiPaw.13G091600' => 'cil', 'ClCG00G003390' => 'cla', 'ClCG01G007220' => 'cla', 'ClCG03G001370' => 'cla', 'ClCG04G008100' => 'cla', 'ClCG06G006110' => 'cla', 'ClCG06G006130' => 'cla', 'ClCG10G021210' => 'cla', 'COL.COLO4_07648' => 'col', 'COL.COLO4_07650' => 'col', 'COL.COLO4_07651' => 'col', 'COL.COLO4_14780' => 'col', 'COL.COLO4_18546' => 'col', 'COL.COLO4_18547' => 'col', 'COL.COLO4_23103' => 'col', 'COL.COLO4_30419' => 'col', 'COL.COLO4_34232' => 'col', 'Cpa.g.sc169.20' => 'cpa', 'Cpa.g.sc57.45' => 'cpa', 'Cpa.g.sc58.124' => 'cpa', 'Cpa.g.sc58.125' => 'cpa', 'Cpa.g.sc81.118' => 'cpa', 'Cpa.g.sc81.119' => 'cpa', 'Cre12.g524700' => 'cre', 'CsaV3_1G034430' => 'csa', 'CsaV3_1G034440' => 'csa', 'CsaV3_1G034450' => 'csa', 'CsaV3_3G034830' => 'csa', 'CsaV3_4G025090' => 'csa', 'CsaV3_5G018660' => 'csa', 'CsaV3_6G038160' => 'csa', 'CSS0003447' => 'camsi', 'CSS0017840' => 'camsi', 'CSS0019260' => 'camsi', 'CSS0040375' => 'camsi', 'CSS0042533' => 'camsi', 'DCAR_005960' => 'dca', 'DCAR_012104' => 'dca', 'DCAR_012105' => 'dca', 'DCAR_012293' => 'dca', 'DCAR_015632' => 'dca', 'DCAR_024602' => 'dca', 'DCAR_028752' => 'dca', 'Dinv06261' => 'din', 'Dinv13982' => 'din', 'Dinv17029' => 'din', 'Dinv18463' => 'din', 'Dinv33181' => 'din', 'Dinv35585' => 'din', 'Dinv37161' => 'din', 'Dinv42977' => 'din', 'Dinv43122' => 'din', 'Dinv44517' => 'din', 'Duzib093G0256' => 'dzi', 'Duzib106G1254' => 'dzi', 'Duzib128G1789' => 'dzi', 'Duzib133G0633' => 'dzi', 'Duzib138G0510' => 'dzi', 'Duzib150G1084' => 'dzi', 'Duzib168G0488' => 'dzi', 'Duzib168G1523' => 'dzi', 'Duzib170G0133' => 'dzi', 'ECA234G1433' => 'eca', 'ECA236G1432' => 'eca', 'ECA236G2256' => 'eca', 'ECA236G2365' => 'eca', 'ECA236G4830' => 'eca', 'ECA248G1505' => 'eca', 'EL10Ac3g06431' => 'bvu', 'EL10Ac5g12577' => 'bvu', 'EL10Ac6g13533' => 'bvu', 'EL10Ac7g16045' => 'bvu', 'Eucgr.A01281' => 'egr', 'Eucgr.B02326' => 'egr', 'Eucgr.H03532' => 'egr', 'Eucgr.K00553' => 'egr', 'Eucgr.K03116' => 'egr', 'FAN02G3963' => 'fan', 'FAN05G0438' => 'fan', 'FAN09G2434' => 'fan', 'FAN12G3984' => 'fan', 'FAN14G0798' => 'fan', 'FAN17G0652' => 'fan', 'FAN19G1988' => 'fan', 'FAN22G0632' => 'fan', 'FAN23G0387' => 'fan', 'FAN26G1323' => 'fan', 'FAN28G0666' => 'fan', 'FvH4_1g26080' => 'fve', 'FvH4_3g36780' => 'fve', 'FvH4_4g15270' => 'fve', 'FvH4_6g13490' => 'fve', 'Glyma.01G098700' => 'gma', 'Glyma.03G065900' => 'gma', 'Glyma.03G073754' => 'gma', 'Glyma.03G073758' => 'gma', 'Glyma.03G083200' => 'gma', 'Glyma.03G225500' => 'gma', 'Glyma.05G037766' => 'gma', 'Glyma.07G133500' => 'gma', 'Glyma.10G139400' => 'gma', 'Glyma.10G248900' => 'gma', 'Glyma.11G137800' => 'gma', 'Glyma.12G061300' => 'gma', 'Glyma.13G337900' => 'gma', 'Glyma.15G036600' => 'gma', 'Glyma.18G182800' => 'gma', 'Glyma.19G222500' => 'gma', 'Glyma.20G144800' => 'gma', 'Gohir.A01G222000' => 'ghi', 'Gohir.A03G044000' => 'ghi', 'Gohir.A03G044100' => 'ghi', 'Gohir.A04G083100' => 'ghi', 'Gohir.A07G127200' => 'ghi', 'Gohir.A07G132400' => 'ghi', 'Gohir.A08G000700' => 'ghi', 'Gohir.A11G327300' => 'ghi', 'Gohir.D01G211500' => 'ghi', 'Gohir.D03G123400' => 'ghi', 'Gohir.D03G123500' => 'ghi', 'Gohir.D04G121800' => 'ghi', 'Gohir.D07G131500' => 'ghi', 'Gohir.D07G136600' => 'ghi', 'Gohir.D08G011600' => 'ghi', 'Gohir.D11G346200' => 'ghi', 'Gorai.001G142800' => 'gra', 'Gorai.001G148700' => 'gra', 'Gorai.002G257300' => 'gra', 'Gorai.003G130000' => 'gra', 'Gorai.003G130100' => 'gra', 'Gorai.004G005300' => 'gra', 'Gorai.007G376500' => 'gra', 'Gorai.012G104700' => 'gra', 'GSVIVG01017946001' => 'vvi', 'GSVIVG01024928001' => 'vvi', 'GSVIVG01028227001' => 'vvi', 'GSVIVG01034151001' => 'vvi', 'HanXRQChr05g0135031' => 'han', 'HanXRQChr05g0135041' => 'han', 'HanXRQChr05g0140021' => 'han', 'HanXRQChr06g0178981' => 'han', 'HanXRQChr07g0188251' => 'han', 'HanXRQChr08g0235311' => 'han', 'HanXRQChr09g0271011' => 'han', 'HanXRQChr10g0293321' => 'han', 'HanXRQChr13g0388171' => 'han', 'Haze_00916' => 'cav', 'Haze_05063' => 'cav', 'Haze_20814' => 'cav', 'Haze_24128' => 'cav', 'Hma1.2p1_0745F.1_g212010' => 'hma', 'Hma1.2p1_0757F.1_g213260' => 'hma', 'Hma1.2p1_0936F.1_g238840' => 'hma', 'Hma1.2p1_1735F.1_g299890' => 'hma', 'Hma1.2p1_1861F.1_g305685' => 'hma', 'HPP92_003397' => 'vpl', 'HPP92_012597' => 'vpl', 'HPP92_015520' => 'vpl', 'HPP92_015539' => 'vpl', 'HPP92_020373' => 'vpl', 'Hund04938' => 'sun', 'Hund10677' => 'sun', 'Hund11033' => 'sun', 'Hund12155' => 'sun', 'Lalb_Chr01g0022551' => 'lal', 'Lalb_Chr03g0042341' => 'lal', 'Lalb_Chr07g0192931' => 'lal', 'Lalb_Chr12g0209551' => 'lal', 'Lalb_Chr19g0125251' => 'lal', 'Lalb_Chr19g0137891' => 'lal', 'Lalb_Chr21g0304641' => 'lal', 'Lalb_Chr21g0309881' => 'lal', 'Lj1A5T12' => 'lonja', 'Lj1C148G10' => 'lonja', 'Lj2A93T83' => 'lonja', 'Lj3A738G68' => 'lonja', 'Lj3C966T1' => 'lonja', 'Lj3g0018958' => 'lja', 'Lj3g0021831' => 'lja', 'Lj3g0025443' => 'lja', 'Lj4g0026809' => 'lja', 'Lj5g0012558' => 'lja', 'Lj5g0021586' => 'lja', 'Lsat_1_v5_gn_5_156840' => 'lsa', 'Lsat_1_v5_gn_8_73460' => 'lsa', 'Lsat_1_v5_gn_8_73481' => 'lsa', 'Lsat_1_v5_gn_9_31601' => 'lsa', 'Lsat_1_v5_gn_9_77320' => 'lsa', 'Manes.01G171300' => 'mes', 'Manes.01G171400' => 'mes', 'Manes.01G236100' => 'mes', 'Manes.02G130500' => 'mes', 'Manes.02G130600' => 'mes', 'Manes.03G180200' => 'mes', 'Manes.05G007000' => 'mes', 'Manes.08G084400' => 'mes', 'Manes.09G092600' => 'mes', 'Manes.15G027900' => 'mes', 'MBI04_g40948_MAGBIO' => 'mbi', 'MBI14_g12123_MAGBIO' => 'mbi', 'MBI18_g28915_MAGBIO' => 'mbi', 'MCO09G053' => 'mco', 'MCO11G782' => 'mco', 'MCO15G215' => 'mco', 'MD03G1088500' => 'mdo', 'MD03G1088600' => 'mdo', 'MD04G1130800' => 'mdo', 'MD09G1291700' => 'mdo', 'MD11G1097500' => 'mdo', 'MD11G1097600' => 'mdo', 'MD12G1143900' => 'mdo', 'MD13G1191400' => 'mdo', 'MD16G1191500' => 'mdo', 'Medtr1g085570' => 'mtr', 'Medtr1g104610' => 'mtr', 'Medtr2g097520' => 'mtr', 'Medtr4g021800' => 'mtr', 'Medtr4g021825' => 'mtr', 'Medtr4g064270' => 'mtr', 'Medtr4g064380' => 'mtr', 'Medtr7g062150' => 'mtr', 'MELO3C003138.2' => 'cme', 'MELO3C005187.2' => 'cme', 'MELO3C009252.2' => 'cme', 'MELO3C014481.2' => 'cme', 'MELO3C020616.2' => 'cme', 'MELO3C020617.2' => 'cme', 'MELO3C020618.2' => 'cme', 'Migut.G00328' => 'egut', 'Migut.J00320' => 'egut', 'Migut.L01000' => 'egut', 'Migut.L01953' => 'egut', 'MSTRG.10253' => 'ama', 'MSTRG.19077' => 'ama', 'MSTRG.26780' => 'ama', 'MSTRG.4023' => 'ama', 'MSTRG.5655' => 'ama', 'MSTRG.9992' => 'ama', 'Nitab4.5_0000043g0310' => 'nta', 'Nitab4.5_0000463g0080' => 'nta', 'Nitab4.5_0000705g0170' => 'nta', 'Nitab4.5_0001326g0060' => 'nta', 'Nitab4.5_0001628g0030' => 'nta', 'Nitab4.5_0002103g0110' => 'nta', 'Nitab4.5_0002946g0030' => 'nta', 'Nitab4.5_0004639g0030' => 'nta', 'Nn2g11149' => 'nnu', 'Nn2g13389' => 'nnu', 'Nn4g25326' => 'nnu', 'Nn4g26290' => 'nnu', 'Nn5g29865' => 'nnu', 'Oeu004163.1' => 'oeu', 'Oeu006901.1' => 'oeu', 'Oeu010096.1' => 'oeu', 'Oeu024340.1' => 'oeu', 'Oeu048369.1' => 'oeu', 'Os01g0973000' => 'osa', 'Os03g0273800' => 'osa', 'Os03g0701200' => 'osa', 'Os03g0834050' => 'osa', 'Os07g0634400' => 'osa', 'Peaxi162Scf00092g01414' => 'pax', 'Peaxi162Scf00165g00818' => 'pax', 'Peaxi162Scf00309g00516' => 'pax', 'Peaxi162Scf00774g00218' => 'pax', 'PGR004G1824' => 'pgr', 'PGR004G2606' => 'pgr', 'PGR031G2716' => 'pgr', 'PGR102G2460' => 'pgr', 'PGR142G2599' => 'pgr', 'PGSC0003DMG400000843' => 'stu', 'PGSC0003DMG400008829' => 'stu', 'PGSC0003DMG400030418' => 'stu', 'PGSC0003DMG400031834' => 'stu', 'PGSC0003DMG401028300' => 'stu', 'PGSC0003DMG402028300' => 'stu', 'Phvul.001G219300' => 'pvu', 'Phvul.007G056000' => 'pvu', 'Phvul.007G208000' => 'pvu', 'Phvul.008G119500' => 'pvu', 'Phvul.010G011200' => 'pvu', 'Phvul.010G014800' => 'pvu', 'Phvul.011G062900' => 'pvu', 'Phvul.L007043' => 'pvu', 'Potri.001G242300' => 'ptr', 'Potri.002G185300' => 'ptr', 'Potri.006G086900' => 'ptr', 'Potri.008G151700' => 'ptr', 'Potri.009G033500' => 'ptr', 'Potri.010G089300' => 'ptr', 'Potri.014G110800' => 'ptr', 'Pp3c27_8130' => 'ppa', 'Pp3c6_27410' => 'ppa', 'PRCOL_00001659' => 'pco', 'PRCOL_00001927' => 'pco', 'PRCOL_00003649' => 'pco', 'Prupe.1G011600' => 'ppe', 'Prupe.3G000800' => 'ppe', 'Prupe.3G001100' => 'ppe', 'Prupe.6G072700' => 'ppe', 'Prupe.6G072800' => 'ppe', 'Prupe.6G257300' => 'ppe', 'Prupe.8G033000' => 'ppe', 'Psat0s2633g0080' => 'psa', 'Psat0s3396g0080' => 'psa', 'Psat0s3396g0200' => 'psa', 'Psat3g139080' => 'psa', 'Psat5g285080' => 'psa', 'Psat6g157760' => 'psa', 'Psat6g208440' => 'psa', 'Psat7g215320' => 'psa', 'Psat7g215400' => 'psa', 'Psat7g235600' => 'psa', 'Psat7g235760' => 'psa', 'PSO063G4603' => 'pso', 'PSO210G0182' => 'pso', 'PSO210G0196' => 'pso', 'PSO339G0394' => 'pso', 'PSO339G4127' => 'pso', 'PSO513G0064' => 'pso', 'PSO761G0079' => 'pso', 'QL01p031003' => 'qlo', 'QL01p031078' => 'qlo', 'QL06p003004' => 'qlo', 'QL07p048731' => 'qlo', 'QL09p037427' => 'qlo', 'RcHm_v2.0_Chr3g0466361' => 'rch', 'RcHm_v2.0_Chr3g0485571' => 'rch', 'RcHm_v2.0_Chr4g0416551' => 'rch', 'RcHm_v2.0_Chr5g0065831' => 'rch', 'Rhsim01G0230500' => 'rsi', 'Rhsim05G0194000' => 'rsi', 'Rhsim08G0250400' => 'rsi', 'Sabra02G0131000' => 'sbr', 'Sabra06G0066300' => 'sbr', 'Sabra08G0115500' => 'sbr', 'Sabra09G0023900' => 'sbr', 'Sabra10G0054000' => 'sbr', 'Sabra14G0081500' => 'sbr', 'Sabra16G0147100' => 'sbr', 'SalBow2G2957' => 'sbo', 'SalBow4G3320' => 'sbo', 'SalBow8G1894' => 'sbo', 'Sc07g0007950' => 'sci', 'Sc12g0001360' => 'sci', 'Sc13g0004330' => 'sci', 'Sc20g0005010' => 'sci', 'Sed0000361' => 'sed', 'Sed0001706' => 'sed', 'Sed0002422' => 'sed', 'Sed0004029' => 'sed', 'Sed0004602' => 'sed', 'Sed0004943' => 'sed', 'Sed0008646' => 'sed', 'Sed0023313' => 'sed', 'Sed0024843' => 'sed', 'SEGI_00081' => 'sgi', 'SEGI_00947' => 'sgi', 'SEGI_04046' => 'sgi', 'SEGI_06880' => 'sgi', 'SEGI_09736' => 'sgi', 'SEGI_12741' => 'sgi', 'SEGI_14530' => 'sgi', 'SEGI_20705' => 'sgi', 'SEGI_26088' => 'sgi', 'SEGI_28323' => 'sgi', 'SEGI_33343' => 'sgi', 'SGA_v2.0_scaffold126G33775' => 'sas', 'SGA_v2.0_scaffold2G01337' => 'sas', 'SGA_v2.0_scaffold38G15006' => 'sas', 'SGA_v2.0_scaffold39G15264' => 'sas', 'SGA_v2.0_scaffold453G51880' => 'sas', 'SHI12696' => 'shi', 'SMO367G1096' => 'smo', 'Solyc01g068630.3' => 'sly', 'Solyc05g011880.3' => 'sly', 'Solyc06g076300.3' => 'sly', 'Solyc09g010940.4' => 'sly', 'Solyc09g075890.3' => 'sly', 'Sopen01g030560' => 'spe', 'Sopen05g006630' => 'spe', 'Sopen06g032720' => 'spe', 'Sopen09g005660' => 'spe', 'Sopen09g030690' => 'spe', 'Sp4g14540' => 'spa', 'Sp4g20030' => 'spa', 'Sp5g01320' => 'spa', 'Sp6g21170' => 'spa', 'Sp6g21180' => 'spa', 'Sp6g21190' => 'spa', 'Sp6g40220' => 'spa', 'TAR362G0122' => 'tar', 'TAR362G1338' => 'tar', 'TAR369G0590' => 'tar', 'TAR371G0824' => 'tar', 'TAR622G1429' => 'tar', 'TAR623G0734' => 'tar', 'TAR625G0441' => 'tar', 'TAR629G0976' => 'tar', 'TAR633G1195' => 'tar', 'TAR636G2660' => 'tar', 'THA.LOC104799440' => 'tha', 'THA.LOC104800966' => 'tha', 'THA.LOC104806559' => 'tha', 'THA.LOC104810765' => 'tha', 'THA.LOC104816266' => 'tha', 'THA.LOC104817419' => 'tha', 'THA.LOC104827021' => 'tha', 'Thecc.01G327400' => 'tca', 'Thecc.04G229200' => 'tca', 'Thecc.05G037400' => 'tca', 'Thecc.09G318600' => 'tca', 'Thecc.09G318700' => 'tca', 'Thhalv10006238m.g' => 'esa', 'Thhalv10014321m.g' => 'esa', 'Thhalv10014335m.g' => 'esa', 'Thhalv10015826m.g' => 'esa', 'Thhalv10017107m.g' => 'esa', 'Thhalv10017180m.g' => 'esa', 'Thhalv10029339m.g' => 'esa', 'TPR.G1699' => 'tpr', 'TPR.G23609' => 'tpr', 'TPR.G3081' => 'tpr', 'TPR.G40397' => 'tpr', 'TPR.G5522' => 'tpr', 'TPR.G5618' => 'tpr', 'TPR.G5626' => 'tpr', 'TWI09G1632' => 'twi', 'TWI23G1230' => 'twi', 'TWI53G1064' => 'twi', 'TWI59G0751' => 'twi', 'TWI74G0947' => 'twi', 'TWI77G0337' => 'twi', 'TWI79G1254' => 'twi', 'unitig_0.g2341' => 'ugi', 'unitig_26.g10006' => 'ugi', 'unitig_26.g10008' => 'ugi', 'unitig_26.g9192' => 'ugi', 'vmacro14547' => 'vma', 'vmacro15333' => 'vma', 'vmacro18743' => 'vma', 'vmacro20166' => 'vma', 'VMungo0331G0523' => 'vmu', 'VMungo0331G1202' => 'vmu', 'VMungo0720G1228' => 'vmu', 'VMungo0720G1514' => 'vmu', 'VMungo1080G0169' => 'vmu', 'VMungo1127G1475' => 'vmu', 'VMungo1383G1208' => 'vmu', 'VMungo1383G1698' => 'vmu', 'Zm00001eb012270' => 'zma', 'Zm00001eb054100' => 'zma', 'Zm00001eb063350' => 'zma', 'Zm00001eb328560' => 'zma', 'Zm00001eb342820' => 'zma', 'Zm00001eb362210' => 'zma', 'Zm00001eb397730' => 'zma', 'Zm00001eb399750' => 'zma' ), 'gf_id' => 'HOM05D000959', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000959' ), 'data_identifier' => 'HOM05D000959', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000959', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '622', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p07100' => 'bna', 'A03p11720' => 'bna', 'A05p08300' => 'bna', 'A05p13380' => 'bna', 'A09p54130' => 'bna', 'A10p16690' => 'bna', 'A10p16700' => 'bna', 'A10p33390' => 'bna', 'Aa31LG10G16020' => 'aar', 'Aa31LG1G11810' => 'aar', 'Aa31LG1G11830' => 'aar', 'Aa31LG1G22510' => 'aar', 'Aa31LG5G4890' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5793' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2310' => 'aag', 'Actinidia08499' => 'ach', 'Actinidia11262' => 'ach', 'Actinidia23926' => 'ach', 'Actinidia34420' => 'ach', 'Actinidia36970' => 'ach', 'Ah.02g111220' => 'amhyb', 'Ah.15g097750' => 'amhyb', 'AL4G27500' => 'aly', 'AL6G11470' => 'aly', 'AL8G35950' => 'aly', 'AL8G35960' => 'aly', 'AL8G35970' => 'aly', 'Aqoxy1G00912' => 'aox', 'Aqoxy2G02253' => 'aox', 'Aqoxy2G02411' => 'aox', 'Aqoxy5G00485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BZ66YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K8ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM4FUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6BF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HFV7XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25JBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0YNNV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MAKK6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P70IT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP2Z6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V61LZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YWP64R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3S9AI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7PGHH' => 'arhy', 'AT2G32150' => 'ath', 'AT3G62040' => 'ath', 'AT5G02230' => 'ath', 'AT5G59480' => 'ath', 'AT5G59490' => 'ath', 'ATR0332G060' => 'atr', 'ATR0559G190' => 'atr', 'ATR0693G294' => 'atr', 'Atru.chr3.3975' => 'acertr', 'Atru.chr3.3976' => 'acertr', 'Atru.chr3.3977' => 'acertr', 'Atru.chr4.2498' => 'acertr', 'Atru.chr5.838' => 'acertr', 'Atru.chr8.1990' => 'acertr', 'Atru.chr8.1991' => 'acertr', 'Atru.chr8.1992' => 'acertr', 'AUR62001759' => 'cqu', 'AUR62009545' => 'cqu', 'AUR62010474' => 'cqu', 'AUR62025820' => 'cqu', 'AUR62030422' => 'cqu', 'AUR62033605' => 'cqu', 'AUR62038615' => 'cqu', 'AUR62041347' => 'cqu', 'BcaB01g04574' => 'bca', 'BcaB02g09263' => 'bca', 'BcaB02g10453' => 'bca', 'BcaB05g22513' => 'bca', 'BcaB08g36253' => 'bca', 'BcaB08g36254' => 'bca', 'BcaC01g06519' => 'bca', 'BcaC02g11889' => 'bca', 'BcaC03g14010' => 'bca', 'BcaC03g18439' => 'bca', 'BcaC04g19765' => 'bca', 'BcaC09g48432' => 'bca', 'BcaNung07302' => 'bca', 'BolC2t06040H' => 'bol', 'BolC2t07346H' => 'bol', 'BolC3t13817H' => 'bol', 'BolC4t22625H' => 'bol', 'BolC4t23297H' => 'bol', 'BolC8t51278H' => 'bol', 'BolC9t58050H' => 'bol', 'BolC9t58051H' => 'bol', 'BolC9t60163H' => 'bol', 'BraA02t04712Z' => 'bra', 'BraA02t05791Z' => 'bra', 'BraA03t10483Z' => 'bra', 'BraA05t19795Z' => 'bra', 'BraA05t20276Z' => 'bra', 'BraA09t40827Z' => 'bra', 'BraA10t43750Z' => 'bra', 'BraA10t43751Z' => 'bra', 'BraA10t45370Z' => 'bra', 'C02p00400' => 'bna', 'C02p12460' => 'bna', 'C03p13680' => 'bna', 'C04p10270' => 'bna', 'C04p17500' => 'bna', 'C08p37010' => 'bna', 'C09p51880' => 'bna', 'C09p51890' => 'bna', 'C09p74300' => 'bna', 'CAN.G179.26' => 'can', 'CAN.G3384.1' => 'can', 'CAN.G394.68' => 'can', 'CAN.G907.13' => 'can', 'CANSAT11G0012' => 'cansat', 'CANSAT25G1586' => 'cansat', 'CANSAT35G0735' => 'cansat', 'CANSAT54G0556' => 'cansat', 'CANSAT64G0356' => 'cansat', 'CANSAT78G2042' => 'cansat', 'CARHR125920' => 'chi', 'CARHR131910' => 'chi', 'CARHR172390' => 'chi', 'CARHR211140' => 'chi', 'CARHR285850' => 'chi', 'CARHR285860' => 'chi', 'Carub.0004s1347' => 'cru', 'Carub.0004s1960' => 'cru', 'Carub.0005s2880' => 'cru', 'Carub.0006s0107' => 'cru', 'Carub.0008s2015' => 'cru', 'Carub.0008s2016' => 'cru', 'Carub.0008s2017' => 'cru', 'Ca_01315_v3' => 'car', 'Ca_05063_v3' => 'car', 'Ca_10231_v3' => 'car', 'Ca_10913_v3' => 'car', 'Ca_19156_v3' => 'car', 'Ca_23644_v3' => 'car', 'Ca_26735_v3' => 'car', 'Cc01_g13130' => 'ccan', 'Cc02_g21690' => 'ccan', 'Cc03_g03600' => 'ccan', 'Cc06_g02510' => 'ccan', 'CDE02G1265' => 'cde', 'CDE05G0415' => 'cde', 'CDE08G1082' => 'cde', 'Cfa005780' => 'cfa', 'Cfa011522' => 'cfa', 'Cfa011523' => 'cfa', 'Cfa015627' => 'cfa', 'Cfa017359' => 'cfa', 'Ciclev10005687m.g' => 'ccl', 'Ciclev10012173m.g' => 'ccl', 'Ciclev10021621m.g' => 'ccl', 'Ciclev10028968m.g' => 'ccl', 'Ciclev10029907m.g' => 'ccl', 'CiPaw.01G164800' => 'cil', 'CiPaw.07G083700' => 'cil', 'CiPaw.07G127000' => 'cil', 'CiPaw.07G136900' => 'cil', 'CiPaw.08G081700' => 'cil', 'CiPaw.09G194600' => 'cil', 'CiPaw.10G146500' => 'cil', 'CiPaw.13G091500' => 'cil', 'CiPaw.13G091600' => 'cil', 'ClCG00G003390' => 'cla', 'ClCG01G007220' => 'cla', 'ClCG03G001370' => 'cla', 'ClCG04G008100' => 'cla', 'ClCG06G006110' => 'cla', 'ClCG06G006130' => 'cla', 'ClCG10G021210' => 'cla', 'COL.COLO4_07648' => 'col', 'COL.COLO4_07650' => 'col', 'COL.COLO4_07651' => 'col', 'COL.COLO4_14780' => 'col', 'COL.COLO4_18546' => 'col', 'COL.COLO4_18547' => 'col', 'COL.COLO4_23103' => 'col', 'COL.COLO4_30419' => 'col', 'COL.COLO4_34232' => 'col', 'Cpa.g.sc169.20' => 'cpa', 'Cpa.g.sc57.45' => 'cpa', 'Cpa.g.sc58.124' => 'cpa', 'Cpa.g.sc58.125' => 'cpa', 'Cpa.g.sc81.118' => 'cpa', 'Cpa.g.sc81.119' => 'cpa', 'Cre12.g524700' => 'cre', 'CsaV3_1G034430' => 'csa', 'CsaV3_1G034440' => 'csa', 'CsaV3_1G034450' => 'csa', 'CsaV3_3G034830' => 'csa', 'CsaV3_4G025090' => 'csa', 'CsaV3_5G018660' => 'csa', 'CsaV3_6G038160' => 'csa', 'CSS0003447' => 'camsi', 'CSS0017840' => 'camsi', 'CSS0019260' => 'camsi', 'CSS0040375' => 'camsi', 'CSS0042533' => 'camsi', 'DCAR_005960' => 'dca', 'DCAR_012104' => 'dca', 'DCAR_012105' => 'dca', 'DCAR_012293' => 'dca', 'DCAR_015632' => 'dca', 'DCAR_024602' => 'dca', 'DCAR_028752' => 'dca', 'Dinv06261' => 'din', 'Dinv13982' => 'din', 'Dinv17029' => 'din', 'Dinv18463' => 'din', 'Dinv33181' => 'din', 'Dinv35585' => 'din', 'Dinv37161' => 'din', 'Dinv42977' => 'din', 'Dinv43122' => 'din', 'Dinv44517' => 'din', 'Duzib093G0256' => 'dzi', 'Duzib106G1254' => 'dzi', 'Duzib128G1789' => 'dzi', 'Duzib133G0633' => 'dzi', 'Duzib138G0510' => 'dzi', 'Duzib150G1084' => 'dzi', 'Duzib168G0488' => 'dzi', 'Duzib168G1523' => 'dzi', 'Duzib170G0133' => 'dzi', 'ECA234G1433' => 'eca', 'ECA236G1432' => 'eca', 'ECA236G2256' => 'eca', 'ECA236G2365' => 'eca', 'ECA236G4830' => 'eca', 'ECA248G1505' => 'eca', 'EL10Ac3g06431' => 'bvu', 'EL10Ac5g12577' => 'bvu', 'EL10Ac6g13533' => 'bvu', 'EL10Ac7g16045' => 'bvu', 'Eucgr.A01281' => 'egr', 'Eucgr.B02326' => 'egr', 'Eucgr.H03532' => 'egr', 'Eucgr.K00553' => 'egr', 'Eucgr.K03116' => 'egr', 'FAN02G3963' => 'fan', 'FAN05G0438' => 'fan', 'FAN09G2434' => 'fan', 'FAN12G3984' => 'fan', 'FAN14G0798' => 'fan', 'FAN17G0652' => 'fan', 'FAN19G1988' => 'fan', 'FAN22G0632' => 'fan', 'FAN23G0387' => 'fan', 'FAN26G1323' => 'fan', 'FAN28G0666' => 'fan', 'FvH4_1g26080' => 'fve', 'FvH4_3g36780' => 'fve', 'FvH4_4g15270' => 'fve', 'FvH4_6g13490' => 'fve', 'Glyma.01G098700' => 'gma', 'Glyma.03G065900' => 'gma', 'Glyma.03G073754' => 'gma', 'Glyma.03G073758' => 'gma', 'Glyma.03G083200' => 'gma', 'Glyma.03G225500' => 'gma', 'Glyma.05G037766' => 'gma', 'Glyma.07G133500' => 'gma', 'Glyma.10G139400' => 'gma', 'Glyma.10G248900' => 'gma', 'Glyma.11G137800' => 'gma', 'Glyma.12G061300' => 'gma', 'Glyma.13G337900' => 'gma', 'Glyma.15G036600' => 'gma', 'Glyma.18G182800' => 'gma', 'Glyma.19G222500' => 'gma', 'Glyma.20G144800' => 'gma', 'Gohir.A01G222000' => 'ghi', 'Gohir.A03G044000' => 'ghi', 'Gohir.A03G044100' => 'ghi', 'Gohir.A04G083100' => 'ghi', 'Gohir.A07G127200' => 'ghi', 'Gohir.A07G132400' => 'ghi', 'Gohir.A08G000700' => 'ghi', 'Gohir.A11G327300' => 'ghi', 'Gohir.D01G211500' => 'ghi', 'Gohir.D03G123400' => 'ghi', 'Gohir.D03G123500' => 'ghi', 'Gohir.D04G121800' => 'ghi', 'Gohir.D07G131500' => 'ghi', 'Gohir.D07G136600' => 'ghi', 'Gohir.D08G011600' => 'ghi', 'Gohir.D11G346200' => 'ghi', 'Gorai.001G142800' => 'gra', 'Gorai.001G148700' => 'gra', 'Gorai.002G257300' => 'gra', 'Gorai.003G130000' => 'gra', 'Gorai.003G130100' => 'gra', 'Gorai.004G005300' => 'gra', 'Gorai.007G376500' => 'gra', 'Gorai.012G104700' => 'gra', 'GSVIVG01017946001' => 'vvi', 'GSVIVG01024928001' => 'vvi', 'GSVIVG01028227001' => 'vvi', 'GSVIVG01034151001' => 'vvi', 'HanXRQChr05g0135031' => 'han', 'HanXRQChr05g0135041' => 'han', 'HanXRQChr05g0140021' => 'han', 'HanXRQChr06g0178981' => 'han', 'HanXRQChr07g0188251' => 'han', 'HanXRQChr08g0235311' => 'han', 'HanXRQChr09g0271011' => 'han', 'HanXRQChr10g0293321' => 'han', 'HanXRQChr13g0388171' => 'han', 'Haze_00916' => 'cav', 'Haze_05063' => 'cav', 'Haze_20814' => 'cav', 'Haze_24128' => 'cav', 'Hma1.2p1_0745F.1_g212010' => 'hma', 'Hma1.2p1_0757F.1_g213260' => 'hma', 'Hma1.2p1_0936F.1_g238840' => 'hma', 'Hma1.2p1_1735F.1_g299890' => 'hma', 'Hma1.2p1_1861F.1_g305685' => 'hma', 'HPP92_003397' => 'vpl', 'HPP92_012597' => 'vpl', 'HPP92_015520' => 'vpl', 'HPP92_015539' => 'vpl', 'HPP92_020373' => 'vpl', 'Hund04938' => 'sun', 'Hund10677' => 'sun', 'Hund11033' => 'sun', 'Hund12155' => 'sun', 'Lalb_Chr01g0022551' => 'lal', 'Lalb_Chr03g0042341' => 'lal', 'Lalb_Chr07g0192931' => 'lal', 'Lalb_Chr12g0209551' => 'lal', 'Lalb_Chr19g0125251' => 'lal', 'Lalb_Chr19g0137891' => 'lal', 'Lalb_Chr21g0304641' => 'lal', 'Lalb_Chr21g0309881' => 'lal', 'Lj1A5T12' => 'lonja', 'Lj1C148G10' => 'lonja', 'Lj2A93T83' => 'lonja', 'Lj3A738G68' => 'lonja', 'Lj3C966T1' => 'lonja', 'Lj3g0018958' => 'lja', 'Lj3g0021831' => 'lja', 'Lj3g0025443' => 'lja', 'Lj4g0026809' => 'lja', 'Lj5g0012558' => 'lja', 'Lj5g0021586' => 'lja', 'Lsat_1_v5_gn_5_156840' => 'lsa', 'Lsat_1_v5_gn_8_73460' => 'lsa', 'Lsat_1_v5_gn_8_73481' => 'lsa', 'Lsat_1_v5_gn_9_31601' => 'lsa', 'Lsat_1_v5_gn_9_77320' => 'lsa', 'Manes.01G171300' => 'mes', 'Manes.01G171400' => 'mes', 'Manes.01G236100' => 'mes', 'Manes.02G130500' => 'mes', 'Manes.02G130600' => 'mes', 'Manes.03G180200' => 'mes', 'Manes.05G007000' => 'mes', 'Manes.08G084400' => 'mes', 'Manes.09G092600' => 'mes', 'Manes.15G027900' => 'mes', 'MBI04_g40948_MAGBIO' => 'mbi', 'MBI14_g12123_MAGBIO' => 'mbi', 'MBI18_g28915_MAGBIO' => 'mbi', 'MCO09G053' => 'mco', 'MCO11G782' => 'mco', 'MCO15G215' => 'mco', 'MD03G1088500' => 'mdo', 'MD03G1088600' => 'mdo', 'MD04G1130800' => 'mdo', 'MD09G1291700' => 'mdo', 'MD11G1097500' => 'mdo', 'MD11G1097600' => 'mdo', 'MD12G1143900' => 'mdo', 'MD13G1191400' => 'mdo', 'MD16G1191500' => 'mdo', 'Medtr1g085570' => 'mtr', 'Medtr1g104610' => 'mtr', 'Medtr2g097520' => 'mtr', 'Medtr4g021800' => 'mtr', 'Medtr4g021825' => 'mtr', 'Medtr4g064270' => 'mtr', 'Medtr4g064380' => 'mtr', 'Medtr7g062150' => 'mtr', 'MELO3C003138.2' => 'cme', 'MELO3C005187.2' => 'cme', 'MELO3C009252.2' => 'cme', 'MELO3C014481.2' => 'cme', 'MELO3C020616.2' => 'cme', 'MELO3C020617.2' => 'cme', 'MELO3C020618.2' => 'cme', 'Migut.G00328' => 'egut', 'Migut.J00320' => 'egut', 'Migut.L01000' => 'egut', 'Migut.L01953' => 'egut', 'MSTRG.10253' => 'ama', 'MSTRG.19077' => 'ama', 'MSTRG.26780' => 'ama', 'MSTRG.4023' => 'ama', 'MSTRG.5655' => 'ama', 'MSTRG.9992' => 'ama', 'Nitab4.5_0000043g0310' => 'nta', 'Nitab4.5_0000463g0080' => 'nta', 'Nitab4.5_0000705g0170' => 'nta', 'Nitab4.5_0001326g0060' => 'nta', 'Nitab4.5_0001628g0030' => 'nta', 'Nitab4.5_0002103g0110' => 'nta', 'Nitab4.5_0002946g0030' => 'nta', 'Nitab4.5_0004639g0030' => 'nta', 'Nn2g11149' => 'nnu', 'Nn2g13389' => 'nnu', 'Nn4g25326' => 'nnu', 'Nn4g26290' => 'nnu', 'Nn5g29865' => 'nnu', 'Oeu004163.1' => 'oeu', 'Oeu006901.1' => 'oeu', 'Oeu010096.1' => 'oeu', 'Oeu024340.1' => 'oeu', 'Oeu048369.1' => 'oeu', 'Os01g0973000' => 'osa', 'Os03g0273800' => 'osa', 'Os03g0701200' => 'osa', 'Os03g0834050' => 'osa', 'Os07g0634400' => 'osa', 'Peaxi162Scf00092g01414' => 'pax', 'Peaxi162Scf00165g00818' => 'pax', 'Peaxi162Scf00309g00516' => 'pax', 'Peaxi162Scf00774g00218' => 'pax', 'PGR004G1824' => 'pgr', 'PGR004G2606' => 'pgr', 'PGR031G2716' => 'pgr', 'PGR102G2460' => 'pgr', 'PGR142G2599' => 'pgr', 'PGSC0003DMG400000843' => 'stu', 'PGSC0003DMG400008829' => 'stu', 'PGSC0003DMG400030418' => 'stu', 'PGSC0003DMG400031834' => 'stu', 'PGSC0003DMG401028300' => 'stu', 'PGSC0003DMG402028300' => 'stu', 'Phvul.001G219300' => 'pvu', 'Phvul.007G056000' => 'pvu', 'Phvul.007G208000' => 'pvu', 'Phvul.008G119500' => 'pvu', 'Phvul.010G011200' => 'pvu', 'Phvul.010G014800' => 'pvu', 'Phvul.011G062900' => 'pvu', 'Phvul.L007043' => 'pvu', 'Potri.001G242300' => 'ptr', 'Potri.002G185300' => 'ptr', 'Potri.006G086900' => 'ptr', 'Potri.008G151700' => 'ptr', 'Potri.009G033500' => 'ptr', 'Potri.010G089300' => 'ptr', 'Potri.014G110800' => 'ptr', 'Pp3c27_8130' => 'ppa', 'Pp3c6_27410' => 'ppa', 'PRCOL_00001659' => 'pco', 'PRCOL_00001927' => 'pco', 'PRCOL_00003649' => 'pco', 'Prupe.1G011600' => 'ppe', 'Prupe.3G000800' => 'ppe', 'Prupe.3G001100' => 'ppe', 'Prupe.6G072700' => 'ppe', 'Prupe.6G072800' => 'ppe', 'Prupe.6G257300' => 'ppe', 'Prupe.8G033000' => 'ppe', 'Psat0s2633g0080' => 'psa', 'Psat0s3396g0080' => 'psa', 'Psat0s3396g0200' => 'psa', 'Psat3g139080' => 'psa', 'Psat5g285080' => 'psa', 'Psat6g157760' => 'psa', 'Psat6g208440' => 'psa', 'Psat7g215320' => 'psa', 'Psat7g215400' => 'psa', 'Psat7g235600' => 'psa', 'Psat7g235760' => 'psa', 'PSO063G4603' => 'pso', 'PSO210G0182' => 'pso', 'PSO210G0196' => 'pso', 'PSO339G0394' => 'pso', 'PSO339G4127' => 'pso', 'PSO513G0064' => 'pso', 'PSO761G0079' => 'pso', 'QL01p031003' => 'qlo', 'QL01p031078' => 'qlo', 'QL06p003004' => 'qlo', 'QL07p048731' => 'qlo', 'QL09p037427' => 'qlo', 'RcHm_v2.0_Chr3g0466361' => 'rch', 'RcHm_v2.0_Chr3g0485571' => 'rch', 'RcHm_v2.0_Chr4g0416551' => 'rch', 'RcHm_v2.0_Chr5g0065831' => 'rch', 'Rhsim01G0230500' => 'rsi', 'Rhsim05G0194000' => 'rsi', 'Rhsim08G0250400' => 'rsi', 'Sabra02G0131000' => 'sbr', 'Sabra06G0066300' => 'sbr', 'Sabra08G0115500' => 'sbr', 'Sabra09G0023900' => 'sbr', 'Sabra10G0054000' => 'sbr', 'Sabra14G0081500' => 'sbr', 'Sabra16G0147100' => 'sbr', 'SalBow2G2957' => 'sbo', 'SalBow4G3320' => 'sbo', 'SalBow8G1894' => 'sbo', 'Sc07g0007950' => 'sci', 'Sc12g0001360' => 'sci', 'Sc13g0004330' => 'sci', 'Sc20g0005010' => 'sci', 'Sed0000361' => 'sed', 'Sed0001706' => 'sed', 'Sed0002422' => 'sed', 'Sed0004029' => 'sed', 'Sed0004602' => 'sed', 'Sed0004943' => 'sed', 'Sed0008646' => 'sed', 'Sed0023313' => 'sed', 'Sed0024843' => 'sed', 'SEGI_00081' => 'sgi', 'SEGI_00947' => 'sgi', 'SEGI_04046' => 'sgi', 'SEGI_06880' => 'sgi', 'SEGI_09736' => 'sgi', 'SEGI_12741' => 'sgi', 'SEGI_14530' => 'sgi', 'SEGI_20705' => 'sgi', 'SEGI_26088' => 'sgi', 'SEGI_28323' => 'sgi', 'SEGI_33343' => 'sgi', 'SGA_v2.0_scaffold126G33775' => 'sas', 'SGA_v2.0_scaffold2G01337' => 'sas', 'SGA_v2.0_scaffold38G15006' => 'sas', 'SGA_v2.0_scaffold39G15264' => 'sas', 'SGA_v2.0_scaffold453G51880' => 'sas', 'SHI12696' => 'shi', 'SMO367G1096' => 'smo', 'Solyc01g068630.3' => 'sly', 'Solyc05g011880.3' => 'sly', 'Solyc06g076300.3' => 'sly', 'Solyc09g010940.4' => 'sly', 'Solyc09g075890.3' => 'sly', 'Sopen01g030560' => 'spe', 'Sopen05g006630' => 'spe', 'Sopen06g032720' => 'spe', 'Sopen09g005660' => 'spe', 'Sopen09g030690' => 'spe', 'Sp4g14540' => 'spa', 'Sp4g20030' => 'spa', 'Sp5g01320' => 'spa', 'Sp6g21170' => 'spa', 'Sp6g21180' => 'spa', 'Sp6g21190' => 'spa', 'Sp6g40220' => 'spa', 'TAR362G0122' => 'tar', 'TAR362G1338' => 'tar', 'TAR369G0590' => 'tar', 'TAR371G0824' => 'tar', 'TAR622G1429' => 'tar', 'TAR623G0734' => 'tar', 'TAR625G0441' => 'tar', 'TAR629G0976' => 'tar', 'TAR633G1195' => 'tar', 'TAR636G2660' => 'tar', 'THA.LOC104799440' => 'tha', 'THA.LOC104800966' => 'tha', 'THA.LOC104806559' => 'tha', 'THA.LOC104810765' => 'tha', 'THA.LOC104816266' => 'tha', 'THA.LOC104817419' => 'tha', 'THA.LOC104827021' => 'tha', 'Thecc.01G327400' => 'tca', 'Thecc.04G229200' => 'tca', 'Thecc.05G037400' => 'tca', 'Thecc.09G318600' => 'tca', 'Thecc.09G318700' => 'tca', 'Thhalv10006238m.g' => 'esa', 'Thhalv10014321m.g' => 'esa', 'Thhalv10014335m.g' => 'esa', 'Thhalv10015826m.g' => 'esa', 'Thhalv10017107m.g' => 'esa', 'Thhalv10017180m.g' => 'esa', 'Thhalv10029339m.g' => 'esa', 'TPR.G1699' => 'tpr', 'TPR.G23609' => 'tpr', 'TPR.G3081' => 'tpr', 'TPR.G40397' => 'tpr', 'TPR.G5522' => 'tpr', 'TPR.G5618' => 'tpr', 'TPR.G5626' => 'tpr', 'TWI09G1632' => 'twi', 'TWI23G1230' => 'twi', 'TWI53G1064' => 'twi', 'TWI59G0751' => 'twi', 'TWI74G0947' => 'twi', 'TWI77G0337' => 'twi', 'TWI79G1254' => 'twi', 'unitig_0.g2341' => 'ugi', 'unitig_26.g10006' => 'ugi', 'unitig_26.g10008' => 'ugi', 'unitig_26.g9192' => 'ugi', 'vmacro14547' => 'vma', 'vmacro15333' => 'vma', 'vmacro18743' => 'vma', 'vmacro20166' => 'vma', 'VMungo0331G0523' => 'vmu', 'VMungo0331G1202' => 'vmu', 'VMungo0720G1228' => 'vmu', 'VMungo0720G1514' => 'vmu', 'VMungo1080G0169' => 'vmu', 'VMungo1127G1475' => 'vmu', 'VMungo1383G1208' => 'vmu', 'VMungo1383G1698' => 'vmu', 'Zm00001eb012270' => 'zma', 'Zm00001eb054100' => 'zma', 'Zm00001eb063350' => 'zma', 'Zm00001eb328560' => 'zma', 'Zm00001eb342820' => 'zma', 'Zm00001eb362210' => 'zma', 'Zm00001eb397730' => 'zma', 'Zm00001eb399750' => 'zma' ) $gf_id = 'HOM05D000959' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000959' ) $data_identifier = 'HOM05D000959' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 5, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 5, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 10, 'mbi' => (int) 3, 'mco' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 2, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 3, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 11, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399750' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000959', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '622', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p07100' => 'bna', 'A03p11720' => 'bna', 'A05p08300' => 'bna', 'A05p13380' => 'bna', 'A09p54130' => 'bna', 'A10p16690' => 'bna', 'A10p16700' => 'bna', 'A10p33390' => 'bna', 'Aa31LG10G16020' => 'aar', 'Aa31LG1G11810' => 'aar', 'Aa31LG1G11830' => 'aar', 'Aa31LG1G22510' => 'aar', 'Aa31LG5G4890' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5793' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2310' => 'aag', 'Actinidia08499' => 'ach', 'Actinidia11262' => 'ach', 'Actinidia23926' => 'ach', 'Actinidia34420' => 'ach', 'Actinidia36970' => 'ach', 'Ah.02g111220' => 'amhyb', 'Ah.15g097750' => 'amhyb', 'AL4G27500' => 'aly', 'AL6G11470' => 'aly', 'AL8G35950' => 'aly', 'AL8G35960' => 'aly', 'AL8G35970' => 'aly', 'Aqoxy1G00912' => 'aox', 'Aqoxy2G02253' => 'aox', 'Aqoxy2G02411' => 'aox', 'Aqoxy5G00485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BZ66YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K8ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM4FUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6BF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HFV7XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25JBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0YNNV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MAKK6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P70IT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP2Z6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V61LZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YWP64R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3S9AI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7PGHH' => 'arhy', 'AT2G32150' => 'ath', 'AT3G62040' => 'ath', 'AT5G02230' => 'ath', 'AT5G59480' => 'ath', 'AT5G59490' => 'ath', 'ATR0332G060' => 'atr', 'ATR0559G190' => 'atr', 'ATR0693G294' => 'atr', 'Atru.chr3.3975' => 'acertr', 'Atru.chr3.3976' => 'acertr', 'Atru.chr3.3977' => 'acertr', 'Atru.chr4.2498' => 'acertr', 'Atru.chr5.838' => 'acertr', 'Atru.chr8.1990' => 'acertr', 'Atru.chr8.1991' => 'acertr', 'Atru.chr8.1992' => 'acertr', 'AUR62001759' => 'cqu', 'AUR62009545' => 'cqu', 'AUR62010474' => 'cqu', 'AUR62025820' => 'cqu', 'AUR62030422' => 'cqu', 'AUR62033605' => 'cqu', 'AUR62038615' => 'cqu', 'AUR62041347' => 'cqu', 'BcaB01g04574' => 'bca', 'BcaB02g09263' => 'bca', 'BcaB02g10453' => 'bca', 'BcaB05g22513' => 'bca', 'BcaB08g36253' => 'bca', 'BcaB08g36254' => 'bca', 'BcaC01g06519' => 'bca', 'BcaC02g11889' => 'bca', 'BcaC03g14010' => 'bca', 'BcaC03g18439' => 'bca', 'BcaC04g19765' => 'bca', 'BcaC09g48432' => 'bca', 'BcaNung07302' => 'bca', 'BolC2t06040H' => 'bol', 'BolC2t07346H' => 'bol', 'BolC3t13817H' => 'bol', 'BolC4t22625H' => 'bol', 'BolC4t23297H' => 'bol', 'BolC8t51278H' => 'bol', 'BolC9t58050H' => 'bol', 'BolC9t58051H' => 'bol', 'BolC9t60163H' => 'bol', 'BraA02t04712Z' => 'bra', 'BraA02t05791Z' => 'bra', 'BraA03t10483Z' => 'bra', 'BraA05t19795Z' => 'bra', 'BraA05t20276Z' => 'bra', 'BraA09t40827Z' => 'bra', 'BraA10t43750Z' => 'bra', 'BraA10t43751Z' => 'bra', 'BraA10t45370Z' => 'bra', 'C02p00400' => 'bna', 'C02p12460' => 'bna', 'C03p13680' => 'bna', 'C04p10270' => 'bna', 'C04p17500' => 'bna', 'C08p37010' => 'bna', 'C09p51880' => 'bna', 'C09p51890' => 'bna', 'C09p74300' => 'bna', 'CAN.G179.26' => 'can', 'CAN.G3384.1' => 'can', 'CAN.G394.68' => 'can', 'CAN.G907.13' => 'can', 'CANSAT11G0012' => 'cansat', 'CANSAT25G1586' => 'cansat', 'CANSAT35G0735' => 'cansat', 'CANSAT54G0556' => 'cansat', 'CANSAT64G0356' => 'cansat', 'CANSAT78G2042' => 'cansat', 'CARHR125920' => 'chi', 'CARHR131910' => 'chi', 'CARHR172390' => 'chi', 'CARHR211140' => 'chi', 'CARHR285850' => 'chi', 'CARHR285860' => 'chi', 'Carub.0004s1347' => 'cru', 'Carub.0004s1960' => 'cru', 'Carub.0005s2880' => 'cru', 'Carub.0006s0107' => 'cru', 'Carub.0008s2015' => 'cru', 'Carub.0008s2016' => 'cru', 'Carub.0008s2017' => 'cru', 'Ca_01315_v3' => 'car', 'Ca_05063_v3' => 'car', 'Ca_10231_v3' => 'car', 'Ca_10913_v3' => 'car', 'Ca_19156_v3' => 'car', 'Ca_23644_v3' => 'car', 'Ca_26735_v3' => 'car', 'Cc01_g13130' => 'ccan', 'Cc02_g21690' => 'ccan', 'Cc03_g03600' => 'ccan', 'Cc06_g02510' => 'ccan', 'CDE02G1265' => 'cde', 'CDE05G0415' => 'cde', 'CDE08G1082' => 'cde', 'Cfa005780' => 'cfa', 'Cfa011522' => 'cfa', 'Cfa011523' => 'cfa', 'Cfa015627' => 'cfa', 'Cfa017359' => 'cfa', 'Ciclev10005687m.g' => 'ccl', 'Ciclev10012173m.g' => 'ccl', 'Ciclev10021621m.g' => 'ccl', 'Ciclev10028968m.g' => 'ccl', 'Ciclev10029907m.g' => 'ccl', 'CiPaw.01G164800' => 'cil', 'CiPaw.07G083700' => 'cil', 'CiPaw.07G127000' => 'cil', 'CiPaw.07G136900' => 'cil', 'CiPaw.08G081700' => 'cil', 'CiPaw.09G194600' => 'cil', 'CiPaw.10G146500' => 'cil', 'CiPaw.13G091500' => 'cil', 'CiPaw.13G091600' => 'cil', 'ClCG00G003390' => 'cla', 'ClCG01G007220' => 'cla', 'ClCG03G001370' => 'cla', 'ClCG04G008100' => 'cla', 'ClCG06G006110' => 'cla', 'ClCG06G006130' => 'cla', 'ClCG10G021210' => 'cla', 'COL.COLO4_07648' => 'col', 'COL.COLO4_07650' => 'col', 'COL.COLO4_07651' => 'col', 'COL.COLO4_14780' => 'col', 'COL.COLO4_18546' => 'col', 'COL.COLO4_18547' => 'col', 'COL.COLO4_23103' => 'col', 'COL.COLO4_30419' => 'col', 'COL.COLO4_34232' => 'col', 'Cpa.g.sc169.20' => 'cpa', 'Cpa.g.sc57.45' => 'cpa', 'Cpa.g.sc58.124' => 'cpa', 'Cpa.g.sc58.125' => 'cpa', 'Cpa.g.sc81.118' => 'cpa', 'Cpa.g.sc81.119' => 'cpa', 'Cre12.g524700' => 'cre', 'CsaV3_1G034430' => 'csa', 'CsaV3_1G034440' => 'csa', 'CsaV3_1G034450' => 'csa', 'CsaV3_3G034830' => 'csa', 'CsaV3_4G025090' => 'csa', 'CsaV3_5G018660' => 'csa', 'CsaV3_6G038160' => 'csa', 'CSS0003447' => 'camsi', 'CSS0017840' => 'camsi', 'CSS0019260' => 'camsi', 'CSS0040375' => 'camsi', 'CSS0042533' => 'camsi', 'DCAR_005960' => 'dca', 'DCAR_012104' => 'dca', 'DCAR_012105' => 'dca', 'DCAR_012293' => 'dca', 'DCAR_015632' => 'dca', 'DCAR_024602' => 'dca', 'DCAR_028752' => 'dca', 'Dinv06261' => 'din', 'Dinv13982' => 'din', 'Dinv17029' => 'din', 'Dinv18463' => 'din', 'Dinv33181' => 'din', 'Dinv35585' => 'din', 'Dinv37161' => 'din', 'Dinv42977' => 'din', 'Dinv43122' => 'din', 'Dinv44517' => 'din', 'Duzib093G0256' => 'dzi', 'Duzib106G1254' => 'dzi', 'Duzib128G1789' => 'dzi', 'Duzib133G0633' => 'dzi', 'Duzib138G0510' => 'dzi', 'Duzib150G1084' => 'dzi', 'Duzib168G0488' => 'dzi', 'Duzib168G1523' => 'dzi', 'Duzib170G0133' => 'dzi', 'ECA234G1433' => 'eca', 'ECA236G1432' => 'eca', 'ECA236G2256' => 'eca', 'ECA236G2365' => 'eca', 'ECA236G4830' => 'eca', 'ECA248G1505' => 'eca', 'EL10Ac3g06431' => 'bvu', 'EL10Ac5g12577' => 'bvu', 'EL10Ac6g13533' => 'bvu', 'EL10Ac7g16045' => 'bvu', 'Eucgr.A01281' => 'egr', 'Eucgr.B02326' => 'egr', 'Eucgr.H03532' => 'egr', 'Eucgr.K00553' => 'egr', 'Eucgr.K03116' => 'egr', 'FAN02G3963' => 'fan', 'FAN05G0438' => 'fan', 'FAN09G2434' => 'fan', 'FAN12G3984' => 'fan', 'FAN14G0798' => 'fan', 'FAN17G0652' => 'fan', 'FAN19G1988' => 'fan', 'FAN22G0632' => 'fan', 'FAN23G0387' => 'fan', 'FAN26G1323' => 'fan', 'FAN28G0666' => 'fan', 'FvH4_1g26080' => 'fve', 'FvH4_3g36780' => 'fve', 'FvH4_4g15270' => 'fve', 'FvH4_6g13490' => 'fve', 'Glyma.01G098700' => 'gma', 'Glyma.03G065900' => 'gma', 'Glyma.03G073754' => 'gma', 'Glyma.03G073758' => 'gma', 'Glyma.03G083200' => 'gma', 'Glyma.03G225500' => 'gma', 'Glyma.05G037766' => 'gma', 'Glyma.07G133500' => 'gma', 'Glyma.10G139400' => 'gma', 'Glyma.10G248900' => 'gma', 'Glyma.11G137800' => 'gma', 'Glyma.12G061300' => 'gma', 'Glyma.13G337900' => 'gma', 'Glyma.15G036600' => 'gma', 'Glyma.18G182800' => 'gma', 'Glyma.19G222500' => 'gma', 'Glyma.20G144800' => 'gma', 'Gohir.A01G222000' => 'ghi', 'Gohir.A03G044000' => 'ghi', 'Gohir.A03G044100' => 'ghi', 'Gohir.A04G083100' => 'ghi', 'Gohir.A07G127200' => 'ghi', 'Gohir.A07G132400' => 'ghi', 'Gohir.A08G000700' => 'ghi', 'Gohir.A11G327300' => 'ghi', 'Gohir.D01G211500' => 'ghi', 'Gohir.D03G123400' => 'ghi', 'Gohir.D03G123500' => 'ghi', 'Gohir.D04G121800' => 'ghi', 'Gohir.D07G131500' => 'ghi', 'Gohir.D07G136600' => 'ghi', 'Gohir.D08G011600' => 'ghi', 'Gohir.D11G346200' => 'ghi', 'Gorai.001G142800' => 'gra', 'Gorai.001G148700' => 'gra', 'Gorai.002G257300' => 'gra', 'Gorai.003G130000' => 'gra', 'Gorai.003G130100' => 'gra', 'Gorai.004G005300' => 'gra', 'Gorai.007G376500' => 'gra', 'Gorai.012G104700' => 'gra', 'GSVIVG01017946001' => 'vvi', 'GSVIVG01024928001' => 'vvi', 'GSVIVG01028227001' => 'vvi', 'GSVIVG01034151001' => 'vvi', 'HanXRQChr05g0135031' => 'han', 'HanXRQChr05g0135041' => 'han', 'HanXRQChr05g0140021' => 'han', 'HanXRQChr06g0178981' => 'han', 'HanXRQChr07g0188251' => 'han', 'HanXRQChr08g0235311' => 'han', 'HanXRQChr09g0271011' => 'han', 'HanXRQChr10g0293321' => 'han', 'HanXRQChr13g0388171' => 'han', 'Haze_00916' => 'cav', 'Haze_05063' => 'cav', 'Haze_20814' => 'cav', 'Haze_24128' => 'cav', 'Hma1.2p1_0745F.1_g212010' => 'hma', 'Hma1.2p1_0757F.1_g213260' => 'hma', 'Hma1.2p1_0936F.1_g238840' => 'hma', 'Hma1.2p1_1735F.1_g299890' => 'hma', 'Hma1.2p1_1861F.1_g305685' => 'hma', 'HPP92_003397' => 'vpl', 'HPP92_012597' => 'vpl', 'HPP92_015520' => 'vpl', 'HPP92_015539' => 'vpl', 'HPP92_020373' => 'vpl', 'Hund04938' => 'sun', 'Hund10677' => 'sun', 'Hund11033' => 'sun', 'Hund12155' => 'sun', 'Lalb_Chr01g0022551' => 'lal', 'Lalb_Chr03g0042341' => 'lal', 'Lalb_Chr07g0192931' => 'lal', 'Lalb_Chr12g0209551' => 'lal', 'Lalb_Chr19g0125251' => 'lal', 'Lalb_Chr19g0137891' => 'lal', 'Lalb_Chr21g0304641' => 'lal', 'Lalb_Chr21g0309881' => 'lal', 'Lj1A5T12' => 'lonja', 'Lj1C148G10' => 'lonja', 'Lj2A93T83' => 'lonja', 'Lj3A738G68' => 'lonja', 'Lj3C966T1' => 'lonja', 'Lj3g0018958' => 'lja', 'Lj3g0021831' => 'lja', 'Lj3g0025443' => 'lja', 'Lj4g0026809' => 'lja', 'Lj5g0012558' => 'lja', 'Lj5g0021586' => 'lja', 'Lsat_1_v5_gn_5_156840' => 'lsa', 'Lsat_1_v5_gn_8_73460' => 'lsa', 'Lsat_1_v5_gn_8_73481' => 'lsa', 'Lsat_1_v5_gn_9_31601' => 'lsa', 'Lsat_1_v5_gn_9_77320' => 'lsa', 'Manes.01G171300' => 'mes', 'Manes.01G171400' => 'mes', 'Manes.01G236100' => 'mes', 'Manes.02G130500' => 'mes', 'Manes.02G130600' => 'mes', 'Manes.03G180200' => 'mes', 'Manes.05G007000' => 'mes', 'Manes.08G084400' => 'mes', 'Manes.09G092600' => 'mes', 'Manes.15G027900' => 'mes', 'MBI04_g40948_MAGBIO' => 'mbi', 'MBI14_g12123_MAGBIO' => 'mbi', 'MBI18_g28915_MAGBIO' => 'mbi', 'MCO09G053' => 'mco', 'MCO11G782' => 'mco', 'MCO15G215' => 'mco', 'MD03G1088500' => 'mdo', 'MD03G1088600' => 'mdo', 'MD04G1130800' => 'mdo', 'MD09G1291700' => 'mdo', 'MD11G1097500' => 'mdo', 'MD11G1097600' => 'mdo', 'MD12G1143900' => 'mdo', 'MD13G1191400' => 'mdo', 'MD16G1191500' => 'mdo', 'Medtr1g085570' => 'mtr', 'Medtr1g104610' => 'mtr', 'Medtr2g097520' => 'mtr', 'Medtr4g021800' => 'mtr', 'Medtr4g021825' => 'mtr', 'Medtr4g064270' => 'mtr', 'Medtr4g064380' => 'mtr', 'Medtr7g062150' => 'mtr', 'MELO3C003138.2' => 'cme', 'MELO3C005187.2' => 'cme', 'MELO3C009252.2' => 'cme', 'MELO3C014481.2' => 'cme', 'MELO3C020616.2' => 'cme', 'MELO3C020617.2' => 'cme', 'MELO3C020618.2' => 'cme', 'Migut.G00328' => 'egut', 'Migut.J00320' => 'egut', 'Migut.L01000' => 'egut', 'Migut.L01953' => 'egut', 'MSTRG.10253' => 'ama', 'MSTRG.19077' => 'ama', 'MSTRG.26780' => 'ama', 'MSTRG.4023' => 'ama', 'MSTRG.5655' => 'ama', 'MSTRG.9992' => 'ama', 'Nitab4.5_0000043g0310' => 'nta', 'Nitab4.5_0000463g0080' => 'nta', 'Nitab4.5_0000705g0170' => 'nta', 'Nitab4.5_0001326g0060' => 'nta', 'Nitab4.5_0001628g0030' => 'nta', 'Nitab4.5_0002103g0110' => 'nta', 'Nitab4.5_0002946g0030' => 'nta', 'Nitab4.5_0004639g0030' => 'nta', 'Nn2g11149' => 'nnu', 'Nn2g13389' => 'nnu', 'Nn4g25326' => 'nnu', 'Nn4g26290' => 'nnu', 'Nn5g29865' => 'nnu', 'Oeu004163.1' => 'oeu', 'Oeu006901.1' => 'oeu', 'Oeu010096.1' => 'oeu', 'Oeu024340.1' => 'oeu', 'Oeu048369.1' => 'oeu', 'Os01g0973000' => 'osa', 'Os03g0273800' => 'osa', 'Os03g0701200' => 'osa', 'Os03g0834050' => 'osa', 'Os07g0634400' => 'osa', 'Peaxi162Scf00092g01414' => 'pax', 'Peaxi162Scf00165g00818' => 'pax', 'Peaxi162Scf00309g00516' => 'pax', 'Peaxi162Scf00774g00218' => 'pax', 'PGR004G1824' => 'pgr', 'PGR004G2606' => 'pgr', 'PGR031G2716' => 'pgr', 'PGR102G2460' => 'pgr', 'PGR142G2599' => 'pgr', 'PGSC0003DMG400000843' => 'stu', 'PGSC0003DMG400008829' => 'stu', 'PGSC0003DMG400030418' => 'stu', 'PGSC0003DMG400031834' => 'stu', 'PGSC0003DMG401028300' => 'stu', 'PGSC0003DMG402028300' => 'stu', 'Phvul.001G219300' => 'pvu', 'Phvul.007G056000' => 'pvu', 'Phvul.007G208000' => 'pvu', 'Phvul.008G119500' => 'pvu', 'Phvul.010G011200' => 'pvu', 'Phvul.010G014800' => 'pvu', 'Phvul.011G062900' => 'pvu', 'Phvul.L007043' => 'pvu', 'Potri.001G242300' => 'ptr', 'Potri.002G185300' => 'ptr', 'Potri.006G086900' => 'ptr', 'Potri.008G151700' => 'ptr', 'Potri.009G033500' => 'ptr', 'Potri.010G089300' => 'ptr', 'Potri.014G110800' => 'ptr', 'Pp3c27_8130' => 'ppa', 'Pp3c6_27410' => 'ppa', 'PRCOL_00001659' => 'pco', 'PRCOL_00001927' => 'pco', 'PRCOL_00003649' => 'pco', 'Prupe.1G011600' => 'ppe', 'Prupe.3G000800' => 'ppe', 'Prupe.3G001100' => 'ppe', 'Prupe.6G072700' => 'ppe', 'Prupe.6G072800' => 'ppe', 'Prupe.6G257300' => 'ppe', 'Prupe.8G033000' => 'ppe', 'Psat0s2633g0080' => 'psa', 'Psat0s3396g0080' => 'psa', 'Psat0s3396g0200' => 'psa', 'Psat3g139080' => 'psa', 'Psat5g285080' => 'psa', 'Psat6g157760' => 'psa', 'Psat6g208440' => 'psa', 'Psat7g215320' => 'psa', 'Psat7g215400' => 'psa', 'Psat7g235600' => 'psa', 'Psat7g235760' => 'psa', 'PSO063G4603' => 'pso', 'PSO210G0182' => 'pso', 'PSO210G0196' => 'pso', 'PSO339G0394' => 'pso', 'PSO339G4127' => 'pso', 'PSO513G0064' => 'pso', 'PSO761G0079' => 'pso', 'QL01p031003' => 'qlo', 'QL01p031078' => 'qlo', 'QL06p003004' => 'qlo', 'QL07p048731' => 'qlo', 'QL09p037427' => 'qlo', 'RcHm_v2.0_Chr3g0466361' => 'rch', 'RcHm_v2.0_Chr3g0485571' => 'rch', 'RcHm_v2.0_Chr4g0416551' => 'rch', 'RcHm_v2.0_Chr5g0065831' => 'rch', 'Rhsim01G0230500' => 'rsi', 'Rhsim05G0194000' => 'rsi', 'Rhsim08G0250400' => 'rsi', 'Sabra02G0131000' => 'sbr', 'Sabra06G0066300' => 'sbr', 'Sabra08G0115500' => 'sbr', 'Sabra09G0023900' => 'sbr', 'Sabra10G0054000' => 'sbr', 'Sabra14G0081500' => 'sbr', 'Sabra16G0147100' => 'sbr', 'SalBow2G2957' => 'sbo', 'SalBow4G3320' => 'sbo', 'SalBow8G1894' => 'sbo', 'Sc07g0007950' => 'sci', 'Sc12g0001360' => 'sci', 'Sc13g0004330' => 'sci', 'Sc20g0005010' => 'sci', 'Sed0000361' => 'sed', 'Sed0001706' => 'sed', 'Sed0002422' => 'sed', 'Sed0004029' => 'sed', 'Sed0004602' => 'sed', 'Sed0004943' => 'sed', 'Sed0008646' => 'sed', 'Sed0023313' => 'sed', 'Sed0024843' => 'sed', 'SEGI_00081' => 'sgi', 'SEGI_00947' => 'sgi', 'SEGI_04046' => 'sgi', 'SEGI_06880' => 'sgi', 'SEGI_09736' => 'sgi', 'SEGI_12741' => 'sgi', 'SEGI_14530' => 'sgi', 'SEGI_20705' => 'sgi', 'SEGI_26088' => 'sgi', 'SEGI_28323' => 'sgi', 'SEGI_33343' => 'sgi', 'SGA_v2.0_scaffold126G33775' => 'sas', 'SGA_v2.0_scaffold2G01337' => 'sas', 'SGA_v2.0_scaffold38G15006' => 'sas', 'SGA_v2.0_scaffold39G15264' => 'sas', 'SGA_v2.0_scaffold453G51880' => 'sas', 'SHI12696' => 'shi', 'SMO367G1096' => 'smo', 'Solyc01g068630.3' => 'sly', 'Solyc05g011880.3' => 'sly', 'Solyc06g076300.3' => 'sly', 'Solyc09g010940.4' => 'sly', 'Solyc09g075890.3' => 'sly', 'Sopen01g030560' => 'spe', 'Sopen05g006630' => 'spe', 'Sopen06g032720' => 'spe', 'Sopen09g005660' => 'spe', 'Sopen09g030690' => 'spe', 'Sp4g14540' => 'spa', 'Sp4g20030' => 'spa', 'Sp5g01320' => 'spa', 'Sp6g21170' => 'spa', 'Sp6g21180' => 'spa', 'Sp6g21190' => 'spa', 'Sp6g40220' => 'spa', 'TAR362G0122' => 'tar', 'TAR362G1338' => 'tar', 'TAR369G0590' => 'tar', 'TAR371G0824' => 'tar', 'TAR622G1429' => 'tar', 'TAR623G0734' => 'tar', 'TAR625G0441' => 'tar', 'TAR629G0976' => 'tar', 'TAR633G1195' => 'tar', 'TAR636G2660' => 'tar', 'THA.LOC104799440' => 'tha', 'THA.LOC104800966' => 'tha', 'THA.LOC104806559' => 'tha', 'THA.LOC104810765' => 'tha', 'THA.LOC104816266' => 'tha', 'THA.LOC104817419' => 'tha', 'THA.LOC104827021' => 'tha', 'Thecc.01G327400' => 'tca', 'Thecc.04G229200' => 'tca', 'Thecc.05G037400' => 'tca', 'Thecc.09G318600' => 'tca', 'Thecc.09G318700' => 'tca', 'Thhalv10006238m.g' => 'esa', 'Thhalv10014321m.g' => 'esa', 'Thhalv10014335m.g' => 'esa', 'Thhalv10015826m.g' => 'esa', 'Thhalv10017107m.g' => 'esa', 'Thhalv10017180m.g' => 'esa', 'Thhalv10029339m.g' => 'esa', 'TPR.G1699' => 'tpr', 'TPR.G23609' => 'tpr', 'TPR.G3081' => 'tpr', 'TPR.G40397' => 'tpr', 'TPR.G5522' => 'tpr', 'TPR.G5618' => 'tpr', 'TPR.G5626' => 'tpr', 'TWI09G1632' => 'twi', 'TWI23G1230' => 'twi', 'TWI53G1064' => 'twi', 'TWI59G0751' => 'twi', 'TWI74G0947' => 'twi', 'TWI77G0337' => 'twi', 'TWI79G1254' => 'twi', 'unitig_0.g2341' => 'ugi', 'unitig_26.g10006' => 'ugi', 'unitig_26.g10008' => 'ugi', 'unitig_26.g9192' => 'ugi', 'vmacro14547' => 'vma', 'vmacro15333' => 'vma', 'vmacro18743' => 'vma', 'vmacro20166' => 'vma', 'VMungo0331G0523' => 'vmu', 'VMungo0331G1202' => 'vmu', 'VMungo0720G1228' => 'vmu', 'VMungo0720G1514' => 'vmu', 'VMungo1080G0169' => 'vmu', 'VMungo1127G1475' => 'vmu', 'VMungo1383G1208' => 'vmu', 'VMungo1383G1698' => 'vmu', 'Zm00001eb012270' => 'zma', 'Zm00001eb054100' => 'zma', 'Zm00001eb063350' => 'zma', 'Zm00001eb328560' => 'zma', 'Zm00001eb342820' => 'zma', 'Zm00001eb362210' => 'zma', 'Zm00001eb397730' => 'zma', 'Zm00001eb399750' => 'zma' ), 'gf_id' => 'HOM05D000959', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000959' ), 'data_identifier' => 'HOM05D000959', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000959', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '622', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p07100' => 'bna', 'A03p11720' => 'bna', 'A05p08300' => 'bna', 'A05p13380' => 'bna', 'A09p54130' => 'bna', 'A10p16690' => 'bna', 'A10p16700' => 'bna', 'A10p33390' => 'bna', 'Aa31LG10G16020' => 'aar', 'Aa31LG1G11810' => 'aar', 'Aa31LG1G11830' => 'aar', 'Aa31LG1G22510' => 'aar', 'Aa31LG5G4890' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5793' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2310' => 'aag', 'Actinidia08499' => 'ach', 'Actinidia11262' => 'ach', 'Actinidia23926' => 'ach', 'Actinidia34420' => 'ach', 'Actinidia36970' => 'ach', 'Ah.02g111220' => 'amhyb', 'Ah.15g097750' => 'amhyb', 'AL4G27500' => 'aly', 'AL6G11470' => 'aly', 'AL8G35950' => 'aly', 'AL8G35960' => 'aly', 'AL8G35970' => 'aly', 'Aqoxy1G00912' => 'aox', 'Aqoxy2G02253' => 'aox', 'Aqoxy2G02411' => 'aox', 'Aqoxy5G00485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BZ66YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K8ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM4FUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6BF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HFV7XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25JBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0YNNV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MAKK6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P70IT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP2Z6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V61LZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YWP64R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3S9AI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7PGHH' => 'arhy', 'AT2G32150' => 'ath', 'AT3G62040' => 'ath', 'AT5G02230' => 'ath', 'AT5G59480' => 'ath', 'AT5G59490' => 'ath', 'ATR0332G060' => 'atr', 'ATR0559G190' => 'atr', 'ATR0693G294' => 'atr', 'Atru.chr3.3975' => 'acertr', 'Atru.chr3.3976' => 'acertr', 'Atru.chr3.3977' => 'acertr', 'Atru.chr4.2498' => 'acertr', 'Atru.chr5.838' => 'acertr', 'Atru.chr8.1990' => 'acertr', 'Atru.chr8.1991' => 'acertr', 'Atru.chr8.1992' => 'acertr', 'AUR62001759' => 'cqu', 'AUR62009545' => 'cqu', 'AUR62010474' => 'cqu', 'AUR62025820' => 'cqu', 'AUR62030422' => 'cqu', 'AUR62033605' => 'cqu', 'AUR62038615' => 'cqu', 'AUR62041347' => 'cqu', 'BcaB01g04574' => 'bca', 'BcaB02g09263' => 'bca', 'BcaB02g10453' => 'bca', 'BcaB05g22513' => 'bca', 'BcaB08g36253' => 'bca', 'BcaB08g36254' => 'bca', 'BcaC01g06519' => 'bca', 'BcaC02g11889' => 'bca', 'BcaC03g14010' => 'bca', 'BcaC03g18439' => 'bca', 'BcaC04g19765' => 'bca', 'BcaC09g48432' => 'bca', 'BcaNung07302' => 'bca', 'BolC2t06040H' => 'bol', 'BolC2t07346H' => 'bol', 'BolC3t13817H' => 'bol', 'BolC4t22625H' => 'bol', 'BolC4t23297H' => 'bol', 'BolC8t51278H' => 'bol', 'BolC9t58050H' => 'bol', 'BolC9t58051H' => 'bol', 'BolC9t60163H' => 'bol', 'BraA02t04712Z' => 'bra', 'BraA02t05791Z' => 'bra', 'BraA03t10483Z' => 'bra', 'BraA05t19795Z' => 'bra', 'BraA05t20276Z' => 'bra', 'BraA09t40827Z' => 'bra', 'BraA10t43750Z' => 'bra', 'BraA10t43751Z' => 'bra', 'BraA10t45370Z' => 'bra', 'C02p00400' => 'bna', 'C02p12460' => 'bna', 'C03p13680' => 'bna', 'C04p10270' => 'bna', 'C04p17500' => 'bna', 'C08p37010' => 'bna', 'C09p51880' => 'bna', 'C09p51890' => 'bna', 'C09p74300' => 'bna', 'CAN.G179.26' => 'can', 'CAN.G3384.1' => 'can', 'CAN.G394.68' => 'can', 'CAN.G907.13' => 'can', 'CANSAT11G0012' => 'cansat', 'CANSAT25G1586' => 'cansat', 'CANSAT35G0735' => 'cansat', 'CANSAT54G0556' => 'cansat', 'CANSAT64G0356' => 'cansat', 'CANSAT78G2042' => 'cansat', 'CARHR125920' => 'chi', 'CARHR131910' => 'chi', 'CARHR172390' => 'chi', 'CARHR211140' => 'chi', 'CARHR285850' => 'chi', 'CARHR285860' => 'chi', 'Carub.0004s1347' => 'cru', 'Carub.0004s1960' => 'cru', 'Carub.0005s2880' => 'cru', 'Carub.0006s0107' => 'cru', 'Carub.0008s2015' => 'cru', 'Carub.0008s2016' => 'cru', 'Carub.0008s2017' => 'cru', 'Ca_01315_v3' => 'car', 'Ca_05063_v3' => 'car', 'Ca_10231_v3' => 'car', 'Ca_10913_v3' => 'car', 'Ca_19156_v3' => 'car', 'Ca_23644_v3' => 'car', 'Ca_26735_v3' => 'car', 'Cc01_g13130' => 'ccan', 'Cc02_g21690' => 'ccan', 'Cc03_g03600' => 'ccan', 'Cc06_g02510' => 'ccan', 'CDE02G1265' => 'cde', 'CDE05G0415' => 'cde', 'CDE08G1082' => 'cde', 'Cfa005780' => 'cfa', 'Cfa011522' => 'cfa', 'Cfa011523' => 'cfa', 'Cfa015627' => 'cfa', 'Cfa017359' => 'cfa', 'Ciclev10005687m.g' => 'ccl', 'Ciclev10012173m.g' => 'ccl', 'Ciclev10021621m.g' => 'ccl', 'Ciclev10028968m.g' => 'ccl', 'Ciclev10029907m.g' => 'ccl', 'CiPaw.01G164800' => 'cil', 'CiPaw.07G083700' => 'cil', 'CiPaw.07G127000' => 'cil', 'CiPaw.07G136900' => 'cil', 'CiPaw.08G081700' => 'cil', 'CiPaw.09G194600' => 'cil', 'CiPaw.10G146500' => 'cil', 'CiPaw.13G091500' => 'cil', 'CiPaw.13G091600' => 'cil', 'ClCG00G003390' => 'cla', 'ClCG01G007220' => 'cla', 'ClCG03G001370' => 'cla', 'ClCG04G008100' => 'cla', 'ClCG06G006110' => 'cla', 'ClCG06G006130' => 'cla', 'ClCG10G021210' => 'cla', 'COL.COLO4_07648' => 'col', 'COL.COLO4_07650' => 'col', 'COL.COLO4_07651' => 'col', 'COL.COLO4_14780' => 'col', 'COL.COLO4_18546' => 'col', 'COL.COLO4_18547' => 'col', 'COL.COLO4_23103' => 'col', 'COL.COLO4_30419' => 'col', 'COL.COLO4_34232' => 'col', 'Cpa.g.sc169.20' => 'cpa', 'Cpa.g.sc57.45' => 'cpa', 'Cpa.g.sc58.124' => 'cpa', 'Cpa.g.sc58.125' => 'cpa', 'Cpa.g.sc81.118' => 'cpa', 'Cpa.g.sc81.119' => 'cpa', 'Cre12.g524700' => 'cre', 'CsaV3_1G034430' => 'csa', 'CsaV3_1G034440' => 'csa', 'CsaV3_1G034450' => 'csa', 'CsaV3_3G034830' => 'csa', 'CsaV3_4G025090' => 'csa', 'CsaV3_5G018660' => 'csa', 'CsaV3_6G038160' => 'csa', 'CSS0003447' => 'camsi', 'CSS0017840' => 'camsi', 'CSS0019260' => 'camsi', 'CSS0040375' => 'camsi', 'CSS0042533' => 'camsi', 'DCAR_005960' => 'dca', 'DCAR_012104' => 'dca', 'DCAR_012105' => 'dca', 'DCAR_012293' => 'dca', 'DCAR_015632' => 'dca', 'DCAR_024602' => 'dca', 'DCAR_028752' => 'dca', 'Dinv06261' => 'din', 'Dinv13982' => 'din', 'Dinv17029' => 'din', 'Dinv18463' => 'din', 'Dinv33181' => 'din', 'Dinv35585' => 'din', 'Dinv37161' => 'din', 'Dinv42977' => 'din', 'Dinv43122' => 'din', 'Dinv44517' => 'din', 'Duzib093G0256' => 'dzi', 'Duzib106G1254' => 'dzi', 'Duzib128G1789' => 'dzi', 'Duzib133G0633' => 'dzi', 'Duzib138G0510' => 'dzi', 'Duzib150G1084' => 'dzi', 'Duzib168G0488' => 'dzi', 'Duzib168G1523' => 'dzi', 'Duzib170G0133' => 'dzi', 'ECA234G1433' => 'eca', 'ECA236G1432' => 'eca', 'ECA236G2256' => 'eca', 'ECA236G2365' => 'eca', 'ECA236G4830' => 'eca', 'ECA248G1505' => 'eca', 'EL10Ac3g06431' => 'bvu', 'EL10Ac5g12577' => 'bvu', 'EL10Ac6g13533' => 'bvu', 'EL10Ac7g16045' => 'bvu', 'Eucgr.A01281' => 'egr', 'Eucgr.B02326' => 'egr', 'Eucgr.H03532' => 'egr', 'Eucgr.K00553' => 'egr', 'Eucgr.K03116' => 'egr', 'FAN02G3963' => 'fan', 'FAN05G0438' => 'fan', 'FAN09G2434' => 'fan', 'FAN12G3984' => 'fan', 'FAN14G0798' => 'fan', 'FAN17G0652' => 'fan', 'FAN19G1988' => 'fan', 'FAN22G0632' => 'fan', 'FAN23G0387' => 'fan', 'FAN26G1323' => 'fan', 'FAN28G0666' => 'fan', 'FvH4_1g26080' => 'fve', 'FvH4_3g36780' => 'fve', 'FvH4_4g15270' => 'fve', 'FvH4_6g13490' => 'fve', 'Glyma.01G098700' => 'gma', 'Glyma.03G065900' => 'gma', 'Glyma.03G073754' => 'gma', 'Glyma.03G073758' => 'gma', 'Glyma.03G083200' => 'gma', 'Glyma.03G225500' => 'gma', 'Glyma.05G037766' => 'gma', 'Glyma.07G133500' => 'gma', 'Glyma.10G139400' => 'gma', 'Glyma.10G248900' => 'gma', 'Glyma.11G137800' => 'gma', 'Glyma.12G061300' => 'gma', 'Glyma.13G337900' => 'gma', 'Glyma.15G036600' => 'gma', 'Glyma.18G182800' => 'gma', 'Glyma.19G222500' => 'gma', 'Glyma.20G144800' => 'gma', 'Gohir.A01G222000' => 'ghi', 'Gohir.A03G044000' => 'ghi', 'Gohir.A03G044100' => 'ghi', 'Gohir.A04G083100' => 'ghi', 'Gohir.A07G127200' => 'ghi', 'Gohir.A07G132400' => 'ghi', 'Gohir.A08G000700' => 'ghi', 'Gohir.A11G327300' => 'ghi', 'Gohir.D01G211500' => 'ghi', 'Gohir.D03G123400' => 'ghi', 'Gohir.D03G123500' => 'ghi', 'Gohir.D04G121800' => 'ghi', 'Gohir.D07G131500' => 'ghi', 'Gohir.D07G136600' => 'ghi', 'Gohir.D08G011600' => 'ghi', 'Gohir.D11G346200' => 'ghi', 'Gorai.001G142800' => 'gra', 'Gorai.001G148700' => 'gra', 'Gorai.002G257300' => 'gra', 'Gorai.003G130000' => 'gra', 'Gorai.003G130100' => 'gra', 'Gorai.004G005300' => 'gra', 'Gorai.007G376500' => 'gra', 'Gorai.012G104700' => 'gra', 'GSVIVG01017946001' => 'vvi', 'GSVIVG01024928001' => 'vvi', 'GSVIVG01028227001' => 'vvi', 'GSVIVG01034151001' => 'vvi', 'HanXRQChr05g0135031' => 'han', 'HanXRQChr05g0135041' => 'han', 'HanXRQChr05g0140021' => 'han', 'HanXRQChr06g0178981' => 'han', 'HanXRQChr07g0188251' => 'han', 'HanXRQChr08g0235311' => 'han', 'HanXRQChr09g0271011' => 'han', 'HanXRQChr10g0293321' => 'han', 'HanXRQChr13g0388171' => 'han', 'Haze_00916' => 'cav', 'Haze_05063' => 'cav', 'Haze_20814' => 'cav', 'Haze_24128' => 'cav', 'Hma1.2p1_0745F.1_g212010' => 'hma', 'Hma1.2p1_0757F.1_g213260' => 'hma', 'Hma1.2p1_0936F.1_g238840' => 'hma', 'Hma1.2p1_1735F.1_g299890' => 'hma', 'Hma1.2p1_1861F.1_g305685' => 'hma', 'HPP92_003397' => 'vpl', 'HPP92_012597' => 'vpl', 'HPP92_015520' => 'vpl', 'HPP92_015539' => 'vpl', 'HPP92_020373' => 'vpl', 'Hund04938' => 'sun', 'Hund10677' => 'sun', 'Hund11033' => 'sun', 'Hund12155' => 'sun', 'Lalb_Chr01g0022551' => 'lal', 'Lalb_Chr03g0042341' => 'lal', 'Lalb_Chr07g0192931' => 'lal', 'Lalb_Chr12g0209551' => 'lal', 'Lalb_Chr19g0125251' => 'lal', 'Lalb_Chr19g0137891' => 'lal', 'Lalb_Chr21g0304641' => 'lal', 'Lalb_Chr21g0309881' => 'lal', 'Lj1A5T12' => 'lonja', 'Lj1C148G10' => 'lonja', 'Lj2A93T83' => 'lonja', 'Lj3A738G68' => 'lonja', 'Lj3C966T1' => 'lonja', 'Lj3g0018958' => 'lja', 'Lj3g0021831' => 'lja', 'Lj3g0025443' => 'lja', 'Lj4g0026809' => 'lja', 'Lj5g0012558' => 'lja', 'Lj5g0021586' => 'lja', 'Lsat_1_v5_gn_5_156840' => 'lsa', 'Lsat_1_v5_gn_8_73460' => 'lsa', 'Lsat_1_v5_gn_8_73481' => 'lsa', 'Lsat_1_v5_gn_9_31601' => 'lsa', 'Lsat_1_v5_gn_9_77320' => 'lsa', 'Manes.01G171300' => 'mes', 'Manes.01G171400' => 'mes', 'Manes.01G236100' => 'mes', 'Manes.02G130500' => 'mes', 'Manes.02G130600' => 'mes', 'Manes.03G180200' => 'mes', 'Manes.05G007000' => 'mes', 'Manes.08G084400' => 'mes', 'Manes.09G092600' => 'mes', 'Manes.15G027900' => 'mes', 'MBI04_g40948_MAGBIO' => 'mbi', 'MBI14_g12123_MAGBIO' => 'mbi', 'MBI18_g28915_MAGBIO' => 'mbi', 'MCO09G053' => 'mco', 'MCO11G782' => 'mco', 'MCO15G215' => 'mco', 'MD03G1088500' => 'mdo', 'MD03G1088600' => 'mdo', 'MD04G1130800' => 'mdo', 'MD09G1291700' => 'mdo', 'MD11G1097500' => 'mdo', 'MD11G1097600' => 'mdo', 'MD12G1143900' => 'mdo', 'MD13G1191400' => 'mdo', 'MD16G1191500' => 'mdo', 'Medtr1g085570' => 'mtr', 'Medtr1g104610' => 'mtr', 'Medtr2g097520' => 'mtr', 'Medtr4g021800' => 'mtr', 'Medtr4g021825' => 'mtr', 'Medtr4g064270' => 'mtr', 'Medtr4g064380' => 'mtr', 'Medtr7g062150' => 'mtr', 'MELO3C003138.2' => 'cme', 'MELO3C005187.2' => 'cme', 'MELO3C009252.2' => 'cme', 'MELO3C014481.2' => 'cme', 'MELO3C020616.2' => 'cme', 'MELO3C020617.2' => 'cme', 'MELO3C020618.2' => 'cme', 'Migut.G00328' => 'egut', 'Migut.J00320' => 'egut', 'Migut.L01000' => 'egut', 'Migut.L01953' => 'egut', 'MSTRG.10253' => 'ama', 'MSTRG.19077' => 'ama', 'MSTRG.26780' => 'ama', 'MSTRG.4023' => 'ama', 'MSTRG.5655' => 'ama', 'MSTRG.9992' => 'ama', 'Nitab4.5_0000043g0310' => 'nta', 'Nitab4.5_0000463g0080' => 'nta', 'Nitab4.5_0000705g0170' => 'nta', 'Nitab4.5_0001326g0060' => 'nta', 'Nitab4.5_0001628g0030' => 'nta', 'Nitab4.5_0002103g0110' => 'nta', 'Nitab4.5_0002946g0030' => 'nta', 'Nitab4.5_0004639g0030' => 'nta', 'Nn2g11149' => 'nnu', 'Nn2g13389' => 'nnu', 'Nn4g25326' => 'nnu', 'Nn4g26290' => 'nnu', 'Nn5g29865' => 'nnu', 'Oeu004163.1' => 'oeu', 'Oeu006901.1' => 'oeu', 'Oeu010096.1' => 'oeu', 'Oeu024340.1' => 'oeu', 'Oeu048369.1' => 'oeu', 'Os01g0973000' => 'osa', 'Os03g0273800' => 'osa', 'Os03g0701200' => 'osa', 'Os03g0834050' => 'osa', 'Os07g0634400' => 'osa', 'Peaxi162Scf00092g01414' => 'pax', 'Peaxi162Scf00165g00818' => 'pax', 'Peaxi162Scf00309g00516' => 'pax', 'Peaxi162Scf00774g00218' => 'pax', 'PGR004G1824' => 'pgr', 'PGR004G2606' => 'pgr', 'PGR031G2716' => 'pgr', 'PGR102G2460' => 'pgr', 'PGR142G2599' => 'pgr', 'PGSC0003DMG400000843' => 'stu', 'PGSC0003DMG400008829' => 'stu', 'PGSC0003DMG400030418' => 'stu', 'PGSC0003DMG400031834' => 'stu', 'PGSC0003DMG401028300' => 'stu', 'PGSC0003DMG402028300' => 'stu', 'Phvul.001G219300' => 'pvu', 'Phvul.007G056000' => 'pvu', 'Phvul.007G208000' => 'pvu', 'Phvul.008G119500' => 'pvu', 'Phvul.010G011200' => 'pvu', 'Phvul.010G014800' => 'pvu', 'Phvul.011G062900' => 'pvu', 'Phvul.L007043' => 'pvu', 'Potri.001G242300' => 'ptr', 'Potri.002G185300' => 'ptr', 'Potri.006G086900' => 'ptr', 'Potri.008G151700' => 'ptr', 'Potri.009G033500' => 'ptr', 'Potri.010G089300' => 'ptr', 'Potri.014G110800' => 'ptr', 'Pp3c27_8130' => 'ppa', 'Pp3c6_27410' => 'ppa', 'PRCOL_00001659' => 'pco', 'PRCOL_00001927' => 'pco', 'PRCOL_00003649' => 'pco', 'Prupe.1G011600' => 'ppe', 'Prupe.3G000800' => 'ppe', 'Prupe.3G001100' => 'ppe', 'Prupe.6G072700' => 'ppe', 'Prupe.6G072800' => 'ppe', 'Prupe.6G257300' => 'ppe', 'Prupe.8G033000' => 'ppe', 'Psat0s2633g0080' => 'psa', 'Psat0s3396g0080' => 'psa', 'Psat0s3396g0200' => 'psa', 'Psat3g139080' => 'psa', 'Psat5g285080' => 'psa', 'Psat6g157760' => 'psa', 'Psat6g208440' => 'psa', 'Psat7g215320' => 'psa', 'Psat7g215400' => 'psa', 'Psat7g235600' => 'psa', 'Psat7g235760' => 'psa', 'PSO063G4603' => 'pso', 'PSO210G0182' => 'pso', 'PSO210G0196' => 'pso', 'PSO339G0394' => 'pso', 'PSO339G4127' => 'pso', 'PSO513G0064' => 'pso', 'PSO761G0079' => 'pso', 'QL01p031003' => 'qlo', 'QL01p031078' => 'qlo', 'QL06p003004' => 'qlo', 'QL07p048731' => 'qlo', 'QL09p037427' => 'qlo', 'RcHm_v2.0_Chr3g0466361' => 'rch', 'RcHm_v2.0_Chr3g0485571' => 'rch', 'RcHm_v2.0_Chr4g0416551' => 'rch', 'RcHm_v2.0_Chr5g0065831' => 'rch', 'Rhsim01G0230500' => 'rsi', 'Rhsim05G0194000' => 'rsi', 'Rhsim08G0250400' => 'rsi', 'Sabra02G0131000' => 'sbr', 'Sabra06G0066300' => 'sbr', 'Sabra08G0115500' => 'sbr', 'Sabra09G0023900' => 'sbr', 'Sabra10G0054000' => 'sbr', 'Sabra14G0081500' => 'sbr', 'Sabra16G0147100' => 'sbr', 'SalBow2G2957' => 'sbo', 'SalBow4G3320' => 'sbo', 'SalBow8G1894' => 'sbo', 'Sc07g0007950' => 'sci', 'Sc12g0001360' => 'sci', 'Sc13g0004330' => 'sci', 'Sc20g0005010' => 'sci', 'Sed0000361' => 'sed', 'Sed0001706' => 'sed', 'Sed0002422' => 'sed', 'Sed0004029' => 'sed', 'Sed0004602' => 'sed', 'Sed0004943' => 'sed', 'Sed0008646' => 'sed', 'Sed0023313' => 'sed', 'Sed0024843' => 'sed', 'SEGI_00081' => 'sgi', 'SEGI_00947' => 'sgi', 'SEGI_04046' => 'sgi', 'SEGI_06880' => 'sgi', 'SEGI_09736' => 'sgi', 'SEGI_12741' => 'sgi', 'SEGI_14530' => 'sgi', 'SEGI_20705' => 'sgi', 'SEGI_26088' => 'sgi', 'SEGI_28323' => 'sgi', 'SEGI_33343' => 'sgi', 'SGA_v2.0_scaffold126G33775' => 'sas', 'SGA_v2.0_scaffold2G01337' => 'sas', 'SGA_v2.0_scaffold38G15006' => 'sas', 'SGA_v2.0_scaffold39G15264' => 'sas', 'SGA_v2.0_scaffold453G51880' => 'sas', 'SHI12696' => 'shi', 'SMO367G1096' => 'smo', 'Solyc01g068630.3' => 'sly', 'Solyc05g011880.3' => 'sly', 'Solyc06g076300.3' => 'sly', 'Solyc09g010940.4' => 'sly', 'Solyc09g075890.3' => 'sly', 'Sopen01g030560' => 'spe', 'Sopen05g006630' => 'spe', 'Sopen06g032720' => 'spe', 'Sopen09g005660' => 'spe', 'Sopen09g030690' => 'spe', 'Sp4g14540' => 'spa', 'Sp4g20030' => 'spa', 'Sp5g01320' => 'spa', 'Sp6g21170' => 'spa', 'Sp6g21180' => 'spa', 'Sp6g21190' => 'spa', 'Sp6g40220' => 'spa', 'TAR362G0122' => 'tar', 'TAR362G1338' => 'tar', 'TAR369G0590' => 'tar', 'TAR371G0824' => 'tar', 'TAR622G1429' => 'tar', 'TAR623G0734' => 'tar', 'TAR625G0441' => 'tar', 'TAR629G0976' => 'tar', 'TAR633G1195' => 'tar', 'TAR636G2660' => 'tar', 'THA.LOC104799440' => 'tha', 'THA.LOC104800966' => 'tha', 'THA.LOC104806559' => 'tha', 'THA.LOC104810765' => 'tha', 'THA.LOC104816266' => 'tha', 'THA.LOC104817419' => 'tha', 'THA.LOC104827021' => 'tha', 'Thecc.01G327400' => 'tca', 'Thecc.04G229200' => 'tca', 'Thecc.05G037400' => 'tca', 'Thecc.09G318600' => 'tca', 'Thecc.09G318700' => 'tca', 'Thhalv10006238m.g' => 'esa', 'Thhalv10014321m.g' => 'esa', 'Thhalv10014335m.g' => 'esa', 'Thhalv10015826m.g' => 'esa', 'Thhalv10017107m.g' => 'esa', 'Thhalv10017180m.g' => 'esa', 'Thhalv10029339m.g' => 'esa', 'TPR.G1699' => 'tpr', 'TPR.G23609' => 'tpr', 'TPR.G3081' => 'tpr', 'TPR.G40397' => 'tpr', 'TPR.G5522' => 'tpr', 'TPR.G5618' => 'tpr', 'TPR.G5626' => 'tpr', 'TWI09G1632' => 'twi', 'TWI23G1230' => 'twi', 'TWI53G1064' => 'twi', 'TWI59G0751' => 'twi', 'TWI74G0947' => 'twi', 'TWI77G0337' => 'twi', 'TWI79G1254' => 'twi', 'unitig_0.g2341' => 'ugi', 'unitig_26.g10006' => 'ugi', 'unitig_26.g10008' => 'ugi', 'unitig_26.g9192' => 'ugi', 'vmacro14547' => 'vma', 'vmacro15333' => 'vma', 'vmacro18743' => 'vma', 'vmacro20166' => 'vma', 'VMungo0331G0523' => 'vmu', 'VMungo0331G1202' => 'vmu', 'VMungo0720G1228' => 'vmu', 'VMungo0720G1514' => 'vmu', 'VMungo1080G0169' => 'vmu', 'VMungo1127G1475' => 'vmu', 'VMungo1383G1208' => 'vmu', 'VMungo1383G1698' => 'vmu', 'Zm00001eb012270' => 'zma', 'Zm00001eb054100' => 'zma', 'Zm00001eb063350' => 'zma', 'Zm00001eb328560' => 'zma', 'Zm00001eb342820' => 'zma', 'Zm00001eb362210' => 'zma', 'Zm00001eb397730' => 'zma', 'Zm00001eb399750' => 'zma' ) $gf_id = 'HOM05D000959' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000959' ) $data_identifier = 'HOM05D000959' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 5, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 5, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 10, 'mbi' => (int) 3, 'mco' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 2, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 3, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 11, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399750' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000959', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '622', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p07100' => 'bna', 'A03p11720' => 'bna', 'A05p08300' => 'bna', 'A05p13380' => 'bna', 'A09p54130' => 'bna', 'A10p16690' => 'bna', 'A10p16700' => 'bna', 'A10p33390' => 'bna', 'Aa31LG10G16020' => 'aar', 'Aa31LG1G11810' => 'aar', 'Aa31LG1G11830' => 'aar', 'Aa31LG1G22510' => 'aar', 'Aa31LG5G4890' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5793' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2310' => 'aag', 'Actinidia08499' => 'ach', 'Actinidia11262' => 'ach', 'Actinidia23926' => 'ach', 'Actinidia34420' => 'ach', 'Actinidia36970' => 'ach', 'Ah.02g111220' => 'amhyb', 'Ah.15g097750' => 'amhyb', 'AL4G27500' => 'aly', 'AL6G11470' => 'aly', 'AL8G35950' => 'aly', 'AL8G35960' => 'aly', 'AL8G35970' => 'aly', 'Aqoxy1G00912' => 'aox', 'Aqoxy2G02253' => 'aox', 'Aqoxy2G02411' => 'aox', 'Aqoxy5G00485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BZ66YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K8ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM4FUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6BF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HFV7XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25JBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0YNNV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MAKK6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P70IT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP2Z6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V61LZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YWP64R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3S9AI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7PGHH' => 'arhy', 'AT2G32150' => 'ath', 'AT3G62040' => 'ath', 'AT5G02230' => 'ath', 'AT5G59480' => 'ath', 'AT5G59490' => 'ath', 'ATR0332G060' => 'atr', 'ATR0559G190' => 'atr', 'ATR0693G294' => 'atr', 'Atru.chr3.3975' => 'acertr', 'Atru.chr3.3976' => 'acertr', 'Atru.chr3.3977' => 'acertr', 'Atru.chr4.2498' => 'acertr', 'Atru.chr5.838' => 'acertr', 'Atru.chr8.1990' => 'acertr', 'Atru.chr8.1991' => 'acertr', 'Atru.chr8.1992' => 'acertr', 'AUR62001759' => 'cqu', 'AUR62009545' => 'cqu', 'AUR62010474' => 'cqu', 'AUR62025820' => 'cqu', 'AUR62030422' => 'cqu', 'AUR62033605' => 'cqu', 'AUR62038615' => 'cqu', 'AUR62041347' => 'cqu', 'BcaB01g04574' => 'bca', 'BcaB02g09263' => 'bca', 'BcaB02g10453' => 'bca', 'BcaB05g22513' => 'bca', 'BcaB08g36253' => 'bca', 'BcaB08g36254' => 'bca', 'BcaC01g06519' => 'bca', 'BcaC02g11889' => 'bca', 'BcaC03g14010' => 'bca', 'BcaC03g18439' => 'bca', 'BcaC04g19765' => 'bca', 'BcaC09g48432' => 'bca', 'BcaNung07302' => 'bca', 'BolC2t06040H' => 'bol', 'BolC2t07346H' => 'bol', 'BolC3t13817H' => 'bol', 'BolC4t22625H' => 'bol', 'BolC4t23297H' => 'bol', 'BolC8t51278H' => 'bol', 'BolC9t58050H' => 'bol', 'BolC9t58051H' => 'bol', 'BolC9t60163H' => 'bol', 'BraA02t04712Z' => 'bra', 'BraA02t05791Z' => 'bra', 'BraA03t10483Z' => 'bra', 'BraA05t19795Z' => 'bra', 'BraA05t20276Z' => 'bra', 'BraA09t40827Z' => 'bra', 'BraA10t43750Z' => 'bra', 'BraA10t43751Z' => 'bra', 'BraA10t45370Z' => 'bra', 'C02p00400' => 'bna', 'C02p12460' => 'bna', 'C03p13680' => 'bna', 'C04p10270' => 'bna', 'C04p17500' => 'bna', 'C08p37010' => 'bna', 'C09p51880' => 'bna', 'C09p51890' => 'bna', 'C09p74300' => 'bna', 'CAN.G179.26' => 'can', 'CAN.G3384.1' => 'can', 'CAN.G394.68' => 'can', 'CAN.G907.13' => 'can', 'CANSAT11G0012' => 'cansat', 'CANSAT25G1586' => 'cansat', 'CANSAT35G0735' => 'cansat', 'CANSAT54G0556' => 'cansat', 'CANSAT64G0356' => 'cansat', 'CANSAT78G2042' => 'cansat', 'CARHR125920' => 'chi', 'CARHR131910' => 'chi', 'CARHR172390' => 'chi', 'CARHR211140' => 'chi', 'CARHR285850' => 'chi', 'CARHR285860' => 'chi', 'Carub.0004s1347' => 'cru', 'Carub.0004s1960' => 'cru', 'Carub.0005s2880' => 'cru', 'Carub.0006s0107' => 'cru', 'Carub.0008s2015' => 'cru', 'Carub.0008s2016' => 'cru', 'Carub.0008s2017' => 'cru', 'Ca_01315_v3' => 'car', 'Ca_05063_v3' => 'car', 'Ca_10231_v3' => 'car', 'Ca_10913_v3' => 'car', 'Ca_19156_v3' => 'car', 'Ca_23644_v3' => 'car', 'Ca_26735_v3' => 'car', 'Cc01_g13130' => 'ccan', 'Cc02_g21690' => 'ccan', 'Cc03_g03600' => 'ccan', 'Cc06_g02510' => 'ccan', 'CDE02G1265' => 'cde', 'CDE05G0415' => 'cde', 'CDE08G1082' => 'cde', 'Cfa005780' => 'cfa', 'Cfa011522' => 'cfa', 'Cfa011523' => 'cfa', 'Cfa015627' => 'cfa', 'Cfa017359' => 'cfa', 'Ciclev10005687m.g' => 'ccl', 'Ciclev10012173m.g' => 'ccl', 'Ciclev10021621m.g' => 'ccl', 'Ciclev10028968m.g' => 'ccl', 'Ciclev10029907m.g' => 'ccl', 'CiPaw.01G164800' => 'cil', 'CiPaw.07G083700' => 'cil', 'CiPaw.07G127000' => 'cil', 'CiPaw.07G136900' => 'cil', 'CiPaw.08G081700' => 'cil', 'CiPaw.09G194600' => 'cil', 'CiPaw.10G146500' => 'cil', 'CiPaw.13G091500' => 'cil', 'CiPaw.13G091600' => 'cil', 'ClCG00G003390' => 'cla', 'ClCG01G007220' => 'cla', 'ClCG03G001370' => 'cla', 'ClCG04G008100' => 'cla', 'ClCG06G006110' => 'cla', 'ClCG06G006130' => 'cla', 'ClCG10G021210' => 'cla', 'COL.COLO4_07648' => 'col', 'COL.COLO4_07650' => 'col', 'COL.COLO4_07651' => 'col', 'COL.COLO4_14780' => 'col', 'COL.COLO4_18546' => 'col', 'COL.COLO4_18547' => 'col', 'COL.COLO4_23103' => 'col', 'COL.COLO4_30419' => 'col', 'COL.COLO4_34232' => 'col', 'Cpa.g.sc169.20' => 'cpa', 'Cpa.g.sc57.45' => 'cpa', 'Cpa.g.sc58.124' => 'cpa', 'Cpa.g.sc58.125' => 'cpa', 'Cpa.g.sc81.118' => 'cpa', 'Cpa.g.sc81.119' => 'cpa', 'Cre12.g524700' => 'cre', 'CsaV3_1G034430' => 'csa', 'CsaV3_1G034440' => 'csa', 'CsaV3_1G034450' => 'csa', 'CsaV3_3G034830' => 'csa', 'CsaV3_4G025090' => 'csa', 'CsaV3_5G018660' => 'csa', 'CsaV3_6G038160' => 'csa', 'CSS0003447' => 'camsi', 'CSS0017840' => 'camsi', 'CSS0019260' => 'camsi', 'CSS0040375' => 'camsi', 'CSS0042533' => 'camsi', 'DCAR_005960' => 'dca', 'DCAR_012104' => 'dca', 'DCAR_012105' => 'dca', 'DCAR_012293' => 'dca', 'DCAR_015632' => 'dca', 'DCAR_024602' => 'dca', 'DCAR_028752' => 'dca', 'Dinv06261' => 'din', 'Dinv13982' => 'din', 'Dinv17029' => 'din', 'Dinv18463' => 'din', 'Dinv33181' => 'din', 'Dinv35585' => 'din', 'Dinv37161' => 'din', 'Dinv42977' => 'din', 'Dinv43122' => 'din', 'Dinv44517' => 'din', 'Duzib093G0256' => 'dzi', 'Duzib106G1254' => 'dzi', 'Duzib128G1789' => 'dzi', 'Duzib133G0633' => 'dzi', 'Duzib138G0510' => 'dzi', 'Duzib150G1084' => 'dzi', 'Duzib168G0488' => 'dzi', 'Duzib168G1523' => 'dzi', 'Duzib170G0133' => 'dzi', 'ECA234G1433' => 'eca', 'ECA236G1432' => 'eca', 'ECA236G2256' => 'eca', 'ECA236G2365' => 'eca', 'ECA236G4830' => 'eca', 'ECA248G1505' => 'eca', 'EL10Ac3g06431' => 'bvu', 'EL10Ac5g12577' => 'bvu', 'EL10Ac6g13533' => 'bvu', 'EL10Ac7g16045' => 'bvu', 'Eucgr.A01281' => 'egr', 'Eucgr.B02326' => 'egr', 'Eucgr.H03532' => 'egr', 'Eucgr.K00553' => 'egr', 'Eucgr.K03116' => 'egr', 'FAN02G3963' => 'fan', 'FAN05G0438' => 'fan', 'FAN09G2434' => 'fan', 'FAN12G3984' => 'fan', 'FAN14G0798' => 'fan', 'FAN17G0652' => 'fan', 'FAN19G1988' => 'fan', 'FAN22G0632' => 'fan', 'FAN23G0387' => 'fan', 'FAN26G1323' => 'fan', 'FAN28G0666' => 'fan', 'FvH4_1g26080' => 'fve', 'FvH4_3g36780' => 'fve', 'FvH4_4g15270' => 'fve', 'FvH4_6g13490' => 'fve', 'Glyma.01G098700' => 'gma', 'Glyma.03G065900' => 'gma', 'Glyma.03G073754' => 'gma', 'Glyma.03G073758' => 'gma', 'Glyma.03G083200' => 'gma', 'Glyma.03G225500' => 'gma', 'Glyma.05G037766' => 'gma', 'Glyma.07G133500' => 'gma', 'Glyma.10G139400' => 'gma', 'Glyma.10G248900' => 'gma', 'Glyma.11G137800' => 'gma', 'Glyma.12G061300' => 'gma', 'Glyma.13G337900' => 'gma', 'Glyma.15G036600' => 'gma', 'Glyma.18G182800' => 'gma', 'Glyma.19G222500' => 'gma', 'Glyma.20G144800' => 'gma', 'Gohir.A01G222000' => 'ghi', 'Gohir.A03G044000' => 'ghi', 'Gohir.A03G044100' => 'ghi', 'Gohir.A04G083100' => 'ghi', 'Gohir.A07G127200' => 'ghi', 'Gohir.A07G132400' => 'ghi', 'Gohir.A08G000700' => 'ghi', 'Gohir.A11G327300' => 'ghi', 'Gohir.D01G211500' => 'ghi', 'Gohir.D03G123400' => 'ghi', 'Gohir.D03G123500' => 'ghi', 'Gohir.D04G121800' => 'ghi', 'Gohir.D07G131500' => 'ghi', 'Gohir.D07G136600' => 'ghi', 'Gohir.D08G011600' => 'ghi', 'Gohir.D11G346200' => 'ghi', 'Gorai.001G142800' => 'gra', 'Gorai.001G148700' => 'gra', 'Gorai.002G257300' => 'gra', 'Gorai.003G130000' => 'gra', 'Gorai.003G130100' => 'gra', 'Gorai.004G005300' => 'gra', 'Gorai.007G376500' => 'gra', 'Gorai.012G104700' => 'gra', 'GSVIVG01017946001' => 'vvi', 'GSVIVG01024928001' => 'vvi', 'GSVIVG01028227001' => 'vvi', 'GSVIVG01034151001' => 'vvi', 'HanXRQChr05g0135031' => 'han', 'HanXRQChr05g0135041' => 'han', 'HanXRQChr05g0140021' => 'han', 'HanXRQChr06g0178981' => 'han', 'HanXRQChr07g0188251' => 'han', 'HanXRQChr08g0235311' => 'han', 'HanXRQChr09g0271011' => 'han', 'HanXRQChr10g0293321' => 'han', 'HanXRQChr13g0388171' => 'han', 'Haze_00916' => 'cav', 'Haze_05063' => 'cav', 'Haze_20814' => 'cav', 'Haze_24128' => 'cav', 'Hma1.2p1_0745F.1_g212010' => 'hma', 'Hma1.2p1_0757F.1_g213260' => 'hma', 'Hma1.2p1_0936F.1_g238840' => 'hma', 'Hma1.2p1_1735F.1_g299890' => 'hma', 'Hma1.2p1_1861F.1_g305685' => 'hma', 'HPP92_003397' => 'vpl', 'HPP92_012597' => 'vpl', 'HPP92_015520' => 'vpl', 'HPP92_015539' => 'vpl', 'HPP92_020373' => 'vpl', 'Hund04938' => 'sun', 'Hund10677' => 'sun', 'Hund11033' => 'sun', 'Hund12155' => 'sun', 'Lalb_Chr01g0022551' => 'lal', 'Lalb_Chr03g0042341' => 'lal', 'Lalb_Chr07g0192931' => 'lal', 'Lalb_Chr12g0209551' => 'lal', 'Lalb_Chr19g0125251' => 'lal', 'Lalb_Chr19g0137891' => 'lal', 'Lalb_Chr21g0304641' => 'lal', 'Lalb_Chr21g0309881' => 'lal', 'Lj1A5T12' => 'lonja', 'Lj1C148G10' => 'lonja', 'Lj2A93T83' => 'lonja', 'Lj3A738G68' => 'lonja', 'Lj3C966T1' => 'lonja', 'Lj3g0018958' => 'lja', 'Lj3g0021831' => 'lja', 'Lj3g0025443' => 'lja', 'Lj4g0026809' => 'lja', 'Lj5g0012558' => 'lja', 'Lj5g0021586' => 'lja', 'Lsat_1_v5_gn_5_156840' => 'lsa', 'Lsat_1_v5_gn_8_73460' => 'lsa', 'Lsat_1_v5_gn_8_73481' => 'lsa', 'Lsat_1_v5_gn_9_31601' => 'lsa', 'Lsat_1_v5_gn_9_77320' => 'lsa', 'Manes.01G171300' => 'mes', 'Manes.01G171400' => 'mes', 'Manes.01G236100' => 'mes', 'Manes.02G130500' => 'mes', 'Manes.02G130600' => 'mes', 'Manes.03G180200' => 'mes', 'Manes.05G007000' => 'mes', 'Manes.08G084400' => 'mes', 'Manes.09G092600' => 'mes', 'Manes.15G027900' => 'mes', 'MBI04_g40948_MAGBIO' => 'mbi', 'MBI14_g12123_MAGBIO' => 'mbi', 'MBI18_g28915_MAGBIO' => 'mbi', 'MCO09G053' => 'mco', 'MCO11G782' => 'mco', 'MCO15G215' => 'mco', 'MD03G1088500' => 'mdo', 'MD03G1088600' => 'mdo', 'MD04G1130800' => 'mdo', 'MD09G1291700' => 'mdo', 'MD11G1097500' => 'mdo', 'MD11G1097600' => 'mdo', 'MD12G1143900' => 'mdo', 'MD13G1191400' => 'mdo', 'MD16G1191500' => 'mdo', 'Medtr1g085570' => 'mtr', 'Medtr1g104610' => 'mtr', 'Medtr2g097520' => 'mtr', 'Medtr4g021800' => 'mtr', 'Medtr4g021825' => 'mtr', 'Medtr4g064270' => 'mtr', 'Medtr4g064380' => 'mtr', 'Medtr7g062150' => 'mtr', 'MELO3C003138.2' => 'cme', 'MELO3C005187.2' => 'cme', 'MELO3C009252.2' => 'cme', 'MELO3C014481.2' => 'cme', 'MELO3C020616.2' => 'cme', 'MELO3C020617.2' => 'cme', 'MELO3C020618.2' => 'cme', 'Migut.G00328' => 'egut', 'Migut.J00320' => 'egut', 'Migut.L01000' => 'egut', 'Migut.L01953' => 'egut', 'MSTRG.10253' => 'ama', 'MSTRG.19077' => 'ama', 'MSTRG.26780' => 'ama', 'MSTRG.4023' => 'ama', 'MSTRG.5655' => 'ama', 'MSTRG.9992' => 'ama', 'Nitab4.5_0000043g0310' => 'nta', 'Nitab4.5_0000463g0080' => 'nta', 'Nitab4.5_0000705g0170' => 'nta', 'Nitab4.5_0001326g0060' => 'nta', 'Nitab4.5_0001628g0030' => 'nta', 'Nitab4.5_0002103g0110' => 'nta', 'Nitab4.5_0002946g0030' => 'nta', 'Nitab4.5_0004639g0030' => 'nta', 'Nn2g11149' => 'nnu', 'Nn2g13389' => 'nnu', 'Nn4g25326' => 'nnu', 'Nn4g26290' => 'nnu', 'Nn5g29865' => 'nnu', 'Oeu004163.1' => 'oeu', 'Oeu006901.1' => 'oeu', 'Oeu010096.1' => 'oeu', 'Oeu024340.1' => 'oeu', 'Oeu048369.1' => 'oeu', 'Os01g0973000' => 'osa', 'Os03g0273800' => 'osa', 'Os03g0701200' => 'osa', 'Os03g0834050' => 'osa', 'Os07g0634400' => 'osa', 'Peaxi162Scf00092g01414' => 'pax', 'Peaxi162Scf00165g00818' => 'pax', 'Peaxi162Scf00309g00516' => 'pax', 'Peaxi162Scf00774g00218' => 'pax', 'PGR004G1824' => 'pgr', 'PGR004G2606' => 'pgr', 'PGR031G2716' => 'pgr', 'PGR102G2460' => 'pgr', 'PGR142G2599' => 'pgr', 'PGSC0003DMG400000843' => 'stu', 'PGSC0003DMG400008829' => 'stu', 'PGSC0003DMG400030418' => 'stu', 'PGSC0003DMG400031834' => 'stu', 'PGSC0003DMG401028300' => 'stu', 'PGSC0003DMG402028300' => 'stu', 'Phvul.001G219300' => 'pvu', 'Phvul.007G056000' => 'pvu', 'Phvul.007G208000' => 'pvu', 'Phvul.008G119500' => 'pvu', 'Phvul.010G011200' => 'pvu', 'Phvul.010G014800' => 'pvu', 'Phvul.011G062900' => 'pvu', 'Phvul.L007043' => 'pvu', 'Potri.001G242300' => 'ptr', 'Potri.002G185300' => 'ptr', 'Potri.006G086900' => 'ptr', 'Potri.008G151700' => 'ptr', 'Potri.009G033500' => 'ptr', 'Potri.010G089300' => 'ptr', 'Potri.014G110800' => 'ptr', 'Pp3c27_8130' => 'ppa', 'Pp3c6_27410' => 'ppa', 'PRCOL_00001659' => 'pco', 'PRCOL_00001927' => 'pco', 'PRCOL_00003649' => 'pco', 'Prupe.1G011600' => 'ppe', 'Prupe.3G000800' => 'ppe', 'Prupe.3G001100' => 'ppe', 'Prupe.6G072700' => 'ppe', 'Prupe.6G072800' => 'ppe', 'Prupe.6G257300' => 'ppe', 'Prupe.8G033000' => 'ppe', 'Psat0s2633g0080' => 'psa', 'Psat0s3396g0080' => 'psa', 'Psat0s3396g0200' => 'psa', 'Psat3g139080' => 'psa', 'Psat5g285080' => 'psa', 'Psat6g157760' => 'psa', 'Psat6g208440' => 'psa', 'Psat7g215320' => 'psa', 'Psat7g215400' => 'psa', 'Psat7g235600' => 'psa', 'Psat7g235760' => 'psa', 'PSO063G4603' => 'pso', 'PSO210G0182' => 'pso', 'PSO210G0196' => 'pso', 'PSO339G0394' => 'pso', 'PSO339G4127' => 'pso', 'PSO513G0064' => 'pso', 'PSO761G0079' => 'pso', 'QL01p031003' => 'qlo', 'QL01p031078' => 'qlo', 'QL06p003004' => 'qlo', 'QL07p048731' => 'qlo', 'QL09p037427' => 'qlo', 'RcHm_v2.0_Chr3g0466361' => 'rch', 'RcHm_v2.0_Chr3g0485571' => 'rch', 'RcHm_v2.0_Chr4g0416551' => 'rch', 'RcHm_v2.0_Chr5g0065831' => 'rch', 'Rhsim01G0230500' => 'rsi', 'Rhsim05G0194000' => 'rsi', 'Rhsim08G0250400' => 'rsi', 'Sabra02G0131000' => 'sbr', 'Sabra06G0066300' => 'sbr', 'Sabra08G0115500' => 'sbr', 'Sabra09G0023900' => 'sbr', 'Sabra10G0054000' => 'sbr', 'Sabra14G0081500' => 'sbr', 'Sabra16G0147100' => 'sbr', 'SalBow2G2957' => 'sbo', 'SalBow4G3320' => 'sbo', 'SalBow8G1894' => 'sbo', 'Sc07g0007950' => 'sci', 'Sc12g0001360' => 'sci', 'Sc13g0004330' => 'sci', 'Sc20g0005010' => 'sci', 'Sed0000361' => 'sed', 'Sed0001706' => 'sed', 'Sed0002422' => 'sed', 'Sed0004029' => 'sed', 'Sed0004602' => 'sed', 'Sed0004943' => 'sed', 'Sed0008646' => 'sed', 'Sed0023313' => 'sed', 'Sed0024843' => 'sed', 'SEGI_00081' => 'sgi', 'SEGI_00947' => 'sgi', 'SEGI_04046' => 'sgi', 'SEGI_06880' => 'sgi', 'SEGI_09736' => 'sgi', 'SEGI_12741' => 'sgi', 'SEGI_14530' => 'sgi', 'SEGI_20705' => 'sgi', 'SEGI_26088' => 'sgi', 'SEGI_28323' => 'sgi', 'SEGI_33343' => 'sgi', 'SGA_v2.0_scaffold126G33775' => 'sas', 'SGA_v2.0_scaffold2G01337' => 'sas', 'SGA_v2.0_scaffold38G15006' => 'sas', 'SGA_v2.0_scaffold39G15264' => 'sas', 'SGA_v2.0_scaffold453G51880' => 'sas', 'SHI12696' => 'shi', 'SMO367G1096' => 'smo', 'Solyc01g068630.3' => 'sly', 'Solyc05g011880.3' => 'sly', 'Solyc06g076300.3' => 'sly', 'Solyc09g010940.4' => 'sly', 'Solyc09g075890.3' => 'sly', 'Sopen01g030560' => 'spe', 'Sopen05g006630' => 'spe', 'Sopen06g032720' => 'spe', 'Sopen09g005660' => 'spe', 'Sopen09g030690' => 'spe', 'Sp4g14540' => 'spa', 'Sp4g20030' => 'spa', 'Sp5g01320' => 'spa', 'Sp6g21170' => 'spa', 'Sp6g21180' => 'spa', 'Sp6g21190' => 'spa', 'Sp6g40220' => 'spa', 'TAR362G0122' => 'tar', 'TAR362G1338' => 'tar', 'TAR369G0590' => 'tar', 'TAR371G0824' => 'tar', 'TAR622G1429' => 'tar', 'TAR623G0734' => 'tar', 'TAR625G0441' => 'tar', 'TAR629G0976' => 'tar', 'TAR633G1195' => 'tar', 'TAR636G2660' => 'tar', 'THA.LOC104799440' => 'tha', 'THA.LOC104800966' => 'tha', 'THA.LOC104806559' => 'tha', 'THA.LOC104810765' => 'tha', 'THA.LOC104816266' => 'tha', 'THA.LOC104817419' => 'tha', 'THA.LOC104827021' => 'tha', 'Thecc.01G327400' => 'tca', 'Thecc.04G229200' => 'tca', 'Thecc.05G037400' => 'tca', 'Thecc.09G318600' => 'tca', 'Thecc.09G318700' => 'tca', 'Thhalv10006238m.g' => 'esa', 'Thhalv10014321m.g' => 'esa', 'Thhalv10014335m.g' => 'esa', 'Thhalv10015826m.g' => 'esa', 'Thhalv10017107m.g' => 'esa', 'Thhalv10017180m.g' => 'esa', 'Thhalv10029339m.g' => 'esa', 'TPR.G1699' => 'tpr', 'TPR.G23609' => 'tpr', 'TPR.G3081' => 'tpr', 'TPR.G40397' => 'tpr', 'TPR.G5522' => 'tpr', 'TPR.G5618' => 'tpr', 'TPR.G5626' => 'tpr', 'TWI09G1632' => 'twi', 'TWI23G1230' => 'twi', 'TWI53G1064' => 'twi', 'TWI59G0751' => 'twi', 'TWI74G0947' => 'twi', 'TWI77G0337' => 'twi', 'TWI79G1254' => 'twi', 'unitig_0.g2341' => 'ugi', 'unitig_26.g10006' => 'ugi', 'unitig_26.g10008' => 'ugi', 'unitig_26.g9192' => 'ugi', 'vmacro14547' => 'vma', 'vmacro15333' => 'vma', 'vmacro18743' => 'vma', 'vmacro20166' => 'vma', 'VMungo0331G0523' => 'vmu', 'VMungo0331G1202' => 'vmu', 'VMungo0720G1228' => 'vmu', 'VMungo0720G1514' => 'vmu', 'VMungo1080G0169' => 'vmu', 'VMungo1127G1475' => 'vmu', 'VMungo1383G1208' => 'vmu', 'VMungo1383G1698' => 'vmu', 'Zm00001eb012270' => 'zma', 'Zm00001eb054100' => 'zma', 'Zm00001eb063350' => 'zma', 'Zm00001eb328560' => 'zma', 'Zm00001eb342820' => 'zma', 'Zm00001eb362210' => 'zma', 'Zm00001eb397730' => 'zma', 'Zm00001eb399750' => 'zma' ), 'gf_id' => 'HOM05D000959', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000959' ), 'data_identifier' => 'HOM05D000959', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000959', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '622', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p07100' => 'bna', 'A03p11720' => 'bna', 'A05p08300' => 'bna', 'A05p13380' => 'bna', 'A09p54130' => 'bna', 'A10p16690' => 'bna', 'A10p16700' => 'bna', 'A10p33390' => 'bna', 'Aa31LG10G16020' => 'aar', 'Aa31LG1G11810' => 'aar', 'Aa31LG1G11830' => 'aar', 'Aa31LG1G22510' => 'aar', 'Aa31LG5G4890' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5793' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2310' => 'aag', 'Actinidia08499' => 'ach', 'Actinidia11262' => 'ach', 'Actinidia23926' => 'ach', 'Actinidia34420' => 'ach', 'Actinidia36970' => 'ach', 'Ah.02g111220' => 'amhyb', 'Ah.15g097750' => 'amhyb', 'AL4G27500' => 'aly', 'AL6G11470' => 'aly', 'AL8G35950' => 'aly', 'AL8G35960' => 'aly', 'AL8G35970' => 'aly', 'Aqoxy1G00912' => 'aox', 'Aqoxy2G02253' => 'aox', 'Aqoxy2G02411' => 'aox', 'Aqoxy5G00485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BZ66YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K8ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM4FUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6BF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HFV7XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25JBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0YNNV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MAKK6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P70IT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP2Z6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V61LZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YWP64R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3S9AI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7PGHH' => 'arhy', 'AT2G32150' => 'ath', 'AT3G62040' => 'ath', 'AT5G02230' => 'ath', 'AT5G59480' => 'ath', 'AT5G59490' => 'ath', 'ATR0332G060' => 'atr', 'ATR0559G190' => 'atr', 'ATR0693G294' => 'atr', 'Atru.chr3.3975' => 'acertr', 'Atru.chr3.3976' => 'acertr', 'Atru.chr3.3977' => 'acertr', 'Atru.chr4.2498' => 'acertr', 'Atru.chr5.838' => 'acertr', 'Atru.chr8.1990' => 'acertr', 'Atru.chr8.1991' => 'acertr', 'Atru.chr8.1992' => 'acertr', 'AUR62001759' => 'cqu', 'AUR62009545' => 'cqu', 'AUR62010474' => 'cqu', 'AUR62025820' => 'cqu', 'AUR62030422' => 'cqu', 'AUR62033605' => 'cqu', 'AUR62038615' => 'cqu', 'AUR62041347' => 'cqu', 'BcaB01g04574' => 'bca', 'BcaB02g09263' => 'bca', 'BcaB02g10453' => 'bca', 'BcaB05g22513' => 'bca', 'BcaB08g36253' => 'bca', 'BcaB08g36254' => 'bca', 'BcaC01g06519' => 'bca', 'BcaC02g11889' => 'bca', 'BcaC03g14010' => 'bca', 'BcaC03g18439' => 'bca', 'BcaC04g19765' => 'bca', 'BcaC09g48432' => 'bca', 'BcaNung07302' => 'bca', 'BolC2t06040H' => 'bol', 'BolC2t07346H' => 'bol', 'BolC3t13817H' => 'bol', 'BolC4t22625H' => 'bol', 'BolC4t23297H' => 'bol', 'BolC8t51278H' => 'bol', 'BolC9t58050H' => 'bol', 'BolC9t58051H' => 'bol', 'BolC9t60163H' => 'bol', 'BraA02t04712Z' => 'bra', 'BraA02t05791Z' => 'bra', 'BraA03t10483Z' => 'bra', 'BraA05t19795Z' => 'bra', 'BraA05t20276Z' => 'bra', 'BraA09t40827Z' => 'bra', 'BraA10t43750Z' => 'bra', 'BraA10t43751Z' => 'bra', 'BraA10t45370Z' => 'bra', 'C02p00400' => 'bna', 'C02p12460' => 'bna', 'C03p13680' => 'bna', 'C04p10270' => 'bna', 'C04p17500' => 'bna', 'C08p37010' => 'bna', 'C09p51880' => 'bna', 'C09p51890' => 'bna', 'C09p74300' => 'bna', 'CAN.G179.26' => 'can', 'CAN.G3384.1' => 'can', 'CAN.G394.68' => 'can', 'CAN.G907.13' => 'can', 'CANSAT11G0012' => 'cansat', 'CANSAT25G1586' => 'cansat', 'CANSAT35G0735' => 'cansat', 'CANSAT54G0556' => 'cansat', 'CANSAT64G0356' => 'cansat', 'CANSAT78G2042' => 'cansat', 'CARHR125920' => 'chi', 'CARHR131910' => 'chi', 'CARHR172390' => 'chi', 'CARHR211140' => 'chi', 'CARHR285850' => 'chi', 'CARHR285860' => 'chi', 'Carub.0004s1347' => 'cru', 'Carub.0004s1960' => 'cru', 'Carub.0005s2880' => 'cru', 'Carub.0006s0107' => 'cru', 'Carub.0008s2015' => 'cru', 'Carub.0008s2016' => 'cru', 'Carub.0008s2017' => 'cru', 'Ca_01315_v3' => 'car', 'Ca_05063_v3' => 'car', 'Ca_10231_v3' => 'car', 'Ca_10913_v3' => 'car', 'Ca_19156_v3' => 'car', 'Ca_23644_v3' => 'car', 'Ca_26735_v3' => 'car', 'Cc01_g13130' => 'ccan', 'Cc02_g21690' => 'ccan', 'Cc03_g03600' => 'ccan', 'Cc06_g02510' => 'ccan', 'CDE02G1265' => 'cde', 'CDE05G0415' => 'cde', 'CDE08G1082' => 'cde', 'Cfa005780' => 'cfa', 'Cfa011522' => 'cfa', 'Cfa011523' => 'cfa', 'Cfa015627' => 'cfa', 'Cfa017359' => 'cfa', 'Ciclev10005687m.g' => 'ccl', 'Ciclev10012173m.g' => 'ccl', 'Ciclev10021621m.g' => 'ccl', 'Ciclev10028968m.g' => 'ccl', 'Ciclev10029907m.g' => 'ccl', 'CiPaw.01G164800' => 'cil', 'CiPaw.07G083700' => 'cil', 'CiPaw.07G127000' => 'cil', 'CiPaw.07G136900' => 'cil', 'CiPaw.08G081700' => 'cil', 'CiPaw.09G194600' => 'cil', 'CiPaw.10G146500' => 'cil', 'CiPaw.13G091500' => 'cil', 'CiPaw.13G091600' => 'cil', 'ClCG00G003390' => 'cla', 'ClCG01G007220' => 'cla', 'ClCG03G001370' => 'cla', 'ClCG04G008100' => 'cla', 'ClCG06G006110' => 'cla', 'ClCG06G006130' => 'cla', 'ClCG10G021210' => 'cla', 'COL.COLO4_07648' => 'col', 'COL.COLO4_07650' => 'col', 'COL.COLO4_07651' => 'col', 'COL.COLO4_14780' => 'col', 'COL.COLO4_18546' => 'col', 'COL.COLO4_18547' => 'col', 'COL.COLO4_23103' => 'col', 'COL.COLO4_30419' => 'col', 'COL.COLO4_34232' => 'col', 'Cpa.g.sc169.20' => 'cpa', 'Cpa.g.sc57.45' => 'cpa', 'Cpa.g.sc58.124' => 'cpa', 'Cpa.g.sc58.125' => 'cpa', 'Cpa.g.sc81.118' => 'cpa', 'Cpa.g.sc81.119' => 'cpa', 'Cre12.g524700' => 'cre', 'CsaV3_1G034430' => 'csa', 'CsaV3_1G034440' => 'csa', 'CsaV3_1G034450' => 'csa', 'CsaV3_3G034830' => 'csa', 'CsaV3_4G025090' => 'csa', 'CsaV3_5G018660' => 'csa', 'CsaV3_6G038160' => 'csa', 'CSS0003447' => 'camsi', 'CSS0017840' => 'camsi', 'CSS0019260' => 'camsi', 'CSS0040375' => 'camsi', 'CSS0042533' => 'camsi', 'DCAR_005960' => 'dca', 'DCAR_012104' => 'dca', 'DCAR_012105' => 'dca', 'DCAR_012293' => 'dca', 'DCAR_015632' => 'dca', 'DCAR_024602' => 'dca', 'DCAR_028752' => 'dca', 'Dinv06261' => 'din', 'Dinv13982' => 'din', 'Dinv17029' => 'din', 'Dinv18463' => 'din', 'Dinv33181' => 'din', 'Dinv35585' => 'din', 'Dinv37161' => 'din', 'Dinv42977' => 'din', 'Dinv43122' => 'din', 'Dinv44517' => 'din', 'Duzib093G0256' => 'dzi', 'Duzib106G1254' => 'dzi', 'Duzib128G1789' => 'dzi', 'Duzib133G0633' => 'dzi', 'Duzib138G0510' => 'dzi', 'Duzib150G1084' => 'dzi', 'Duzib168G0488' => 'dzi', 'Duzib168G1523' => 'dzi', 'Duzib170G0133' => 'dzi', 'ECA234G1433' => 'eca', 'ECA236G1432' => 'eca', 'ECA236G2256' => 'eca', 'ECA236G2365' => 'eca', 'ECA236G4830' => 'eca', 'ECA248G1505' => 'eca', 'EL10Ac3g06431' => 'bvu', 'EL10Ac5g12577' => 'bvu', 'EL10Ac6g13533' => 'bvu', 'EL10Ac7g16045' => 'bvu', 'Eucgr.A01281' => 'egr', 'Eucgr.B02326' => 'egr', 'Eucgr.H03532' => 'egr', 'Eucgr.K00553' => 'egr', 'Eucgr.K03116' => 'egr', 'FAN02G3963' => 'fan', 'FAN05G0438' => 'fan', 'FAN09G2434' => 'fan', 'FAN12G3984' => 'fan', 'FAN14G0798' => 'fan', 'FAN17G0652' => 'fan', 'FAN19G1988' => 'fan', 'FAN22G0632' => 'fan', 'FAN23G0387' => 'fan', 'FAN26G1323' => 'fan', 'FAN28G0666' => 'fan', 'FvH4_1g26080' => 'fve', 'FvH4_3g36780' => 'fve', 'FvH4_4g15270' => 'fve', 'FvH4_6g13490' => 'fve', 'Glyma.01G098700' => 'gma', 'Glyma.03G065900' => 'gma', 'Glyma.03G073754' => 'gma', 'Glyma.03G073758' => 'gma', 'Glyma.03G083200' => 'gma', 'Glyma.03G225500' => 'gma', 'Glyma.05G037766' => 'gma', 'Glyma.07G133500' => 'gma', 'Glyma.10G139400' => 'gma', 'Glyma.10G248900' => 'gma', 'Glyma.11G137800' => 'gma', 'Glyma.12G061300' => 'gma', 'Glyma.13G337900' => 'gma', 'Glyma.15G036600' => 'gma', 'Glyma.18G182800' => 'gma', 'Glyma.19G222500' => 'gma', 'Glyma.20G144800' => 'gma', 'Gohir.A01G222000' => 'ghi', 'Gohir.A03G044000' => 'ghi', 'Gohir.A03G044100' => 'ghi', 'Gohir.A04G083100' => 'ghi', 'Gohir.A07G127200' => 'ghi', 'Gohir.A07G132400' => 'ghi', 'Gohir.A08G000700' => 'ghi', 'Gohir.A11G327300' => 'ghi', 'Gohir.D01G211500' => 'ghi', 'Gohir.D03G123400' => 'ghi', 'Gohir.D03G123500' => 'ghi', 'Gohir.D04G121800' => 'ghi', 'Gohir.D07G131500' => 'ghi', 'Gohir.D07G136600' => 'ghi', 'Gohir.D08G011600' => 'ghi', 'Gohir.D11G346200' => 'ghi', 'Gorai.001G142800' => 'gra', 'Gorai.001G148700' => 'gra', 'Gorai.002G257300' => 'gra', 'Gorai.003G130000' => 'gra', 'Gorai.003G130100' => 'gra', 'Gorai.004G005300' => 'gra', 'Gorai.007G376500' => 'gra', 'Gorai.012G104700' => 'gra', 'GSVIVG01017946001' => 'vvi', 'GSVIVG01024928001' => 'vvi', 'GSVIVG01028227001' => 'vvi', 'GSVIVG01034151001' => 'vvi', 'HanXRQChr05g0135031' => 'han', 'HanXRQChr05g0135041' => 'han', 'HanXRQChr05g0140021' => 'han', 'HanXRQChr06g0178981' => 'han', 'HanXRQChr07g0188251' => 'han', 'HanXRQChr08g0235311' => 'han', 'HanXRQChr09g0271011' => 'han', 'HanXRQChr10g0293321' => 'han', 'HanXRQChr13g0388171' => 'han', 'Haze_00916' => 'cav', 'Haze_05063' => 'cav', 'Haze_20814' => 'cav', 'Haze_24128' => 'cav', 'Hma1.2p1_0745F.1_g212010' => 'hma', 'Hma1.2p1_0757F.1_g213260' => 'hma', 'Hma1.2p1_0936F.1_g238840' => 'hma', 'Hma1.2p1_1735F.1_g299890' => 'hma', 'Hma1.2p1_1861F.1_g305685' => 'hma', 'HPP92_003397' => 'vpl', 'HPP92_012597' => 'vpl', 'HPP92_015520' => 'vpl', 'HPP92_015539' => 'vpl', 'HPP92_020373' => 'vpl', 'Hund04938' => 'sun', 'Hund10677' => 'sun', 'Hund11033' => 'sun', 'Hund12155' => 'sun', 'Lalb_Chr01g0022551' => 'lal', 'Lalb_Chr03g0042341' => 'lal', 'Lalb_Chr07g0192931' => 'lal', 'Lalb_Chr12g0209551' => 'lal', 'Lalb_Chr19g0125251' => 'lal', 'Lalb_Chr19g0137891' => 'lal', 'Lalb_Chr21g0304641' => 'lal', 'Lalb_Chr21g0309881' => 'lal', 'Lj1A5T12' => 'lonja', 'Lj1C148G10' => 'lonja', 'Lj2A93T83' => 'lonja', 'Lj3A738G68' => 'lonja', 'Lj3C966T1' => 'lonja', 'Lj3g0018958' => 'lja', 'Lj3g0021831' => 'lja', 'Lj3g0025443' => 'lja', 'Lj4g0026809' => 'lja', 'Lj5g0012558' => 'lja', 'Lj5g0021586' => 'lja', 'Lsat_1_v5_gn_5_156840' => 'lsa', 'Lsat_1_v5_gn_8_73460' => 'lsa', 'Lsat_1_v5_gn_8_73481' => 'lsa', 'Lsat_1_v5_gn_9_31601' => 'lsa', 'Lsat_1_v5_gn_9_77320' => 'lsa', 'Manes.01G171300' => 'mes', 'Manes.01G171400' => 'mes', 'Manes.01G236100' => 'mes', 'Manes.02G130500' => 'mes', 'Manes.02G130600' => 'mes', 'Manes.03G180200' => 'mes', 'Manes.05G007000' => 'mes', 'Manes.08G084400' => 'mes', 'Manes.09G092600' => 'mes', 'Manes.15G027900' => 'mes', 'MBI04_g40948_MAGBIO' => 'mbi', 'MBI14_g12123_MAGBIO' => 'mbi', 'MBI18_g28915_MAGBIO' => 'mbi', 'MCO09G053' => 'mco', 'MCO11G782' => 'mco', 'MCO15G215' => 'mco', 'MD03G1088500' => 'mdo', 'MD03G1088600' => 'mdo', 'MD04G1130800' => 'mdo', 'MD09G1291700' => 'mdo', 'MD11G1097500' => 'mdo', 'MD11G1097600' => 'mdo', 'MD12G1143900' => 'mdo', 'MD13G1191400' => 'mdo', 'MD16G1191500' => 'mdo', 'Medtr1g085570' => 'mtr', 'Medtr1g104610' => 'mtr', 'Medtr2g097520' => 'mtr', 'Medtr4g021800' => 'mtr', 'Medtr4g021825' => 'mtr', 'Medtr4g064270' => 'mtr', 'Medtr4g064380' => 'mtr', 'Medtr7g062150' => 'mtr', 'MELO3C003138.2' => 'cme', 'MELO3C005187.2' => 'cme', 'MELO3C009252.2' => 'cme', 'MELO3C014481.2' => 'cme', 'MELO3C020616.2' => 'cme', 'MELO3C020617.2' => 'cme', 'MELO3C020618.2' => 'cme', 'Migut.G00328' => 'egut', 'Migut.J00320' => 'egut', 'Migut.L01000' => 'egut', 'Migut.L01953' => 'egut', 'MSTRG.10253' => 'ama', 'MSTRG.19077' => 'ama', 'MSTRG.26780' => 'ama', 'MSTRG.4023' => 'ama', 'MSTRG.5655' => 'ama', 'MSTRG.9992' => 'ama', 'Nitab4.5_0000043g0310' => 'nta', 'Nitab4.5_0000463g0080' => 'nta', 'Nitab4.5_0000705g0170' => 'nta', 'Nitab4.5_0001326g0060' => 'nta', 'Nitab4.5_0001628g0030' => 'nta', 'Nitab4.5_0002103g0110' => 'nta', 'Nitab4.5_0002946g0030' => 'nta', 'Nitab4.5_0004639g0030' => 'nta', 'Nn2g11149' => 'nnu', 'Nn2g13389' => 'nnu', 'Nn4g25326' => 'nnu', 'Nn4g26290' => 'nnu', 'Nn5g29865' => 'nnu', 'Oeu004163.1' => 'oeu', 'Oeu006901.1' => 'oeu', 'Oeu010096.1' => 'oeu', 'Oeu024340.1' => 'oeu', 'Oeu048369.1' => 'oeu', 'Os01g0973000' => 'osa', 'Os03g0273800' => 'osa', 'Os03g0701200' => 'osa', 'Os03g0834050' => 'osa', 'Os07g0634400' => 'osa', 'Peaxi162Scf00092g01414' => 'pax', 'Peaxi162Scf00165g00818' => 'pax', 'Peaxi162Scf00309g00516' => 'pax', 'Peaxi162Scf00774g00218' => 'pax', 'PGR004G1824' => 'pgr', 'PGR004G2606' => 'pgr', 'PGR031G2716' => 'pgr', 'PGR102G2460' => 'pgr', 'PGR142G2599' => 'pgr', 'PGSC0003DMG400000843' => 'stu', 'PGSC0003DMG400008829' => 'stu', 'PGSC0003DMG400030418' => 'stu', 'PGSC0003DMG400031834' => 'stu', 'PGSC0003DMG401028300' => 'stu', 'PGSC0003DMG402028300' => 'stu', 'Phvul.001G219300' => 'pvu', 'Phvul.007G056000' => 'pvu', 'Phvul.007G208000' => 'pvu', 'Phvul.008G119500' => 'pvu', 'Phvul.010G011200' => 'pvu', 'Phvul.010G014800' => 'pvu', 'Phvul.011G062900' => 'pvu', 'Phvul.L007043' => 'pvu', 'Potri.001G242300' => 'ptr', 'Potri.002G185300' => 'ptr', 'Potri.006G086900' => 'ptr', 'Potri.008G151700' => 'ptr', 'Potri.009G033500' => 'ptr', 'Potri.010G089300' => 'ptr', 'Potri.014G110800' => 'ptr', 'Pp3c27_8130' => 'ppa', 'Pp3c6_27410' => 'ppa', 'PRCOL_00001659' => 'pco', 'PRCOL_00001927' => 'pco', 'PRCOL_00003649' => 'pco', 'Prupe.1G011600' => 'ppe', 'Prupe.3G000800' => 'ppe', 'Prupe.3G001100' => 'ppe', 'Prupe.6G072700' => 'ppe', 'Prupe.6G072800' => 'ppe', 'Prupe.6G257300' => 'ppe', 'Prupe.8G033000' => 'ppe', 'Psat0s2633g0080' => 'psa', 'Psat0s3396g0080' => 'psa', 'Psat0s3396g0200' => 'psa', 'Psat3g139080' => 'psa', 'Psat5g285080' => 'psa', 'Psat6g157760' => 'psa', 'Psat6g208440' => 'psa', 'Psat7g215320' => 'psa', 'Psat7g215400' => 'psa', 'Psat7g235600' => 'psa', 'Psat7g235760' => 'psa', 'PSO063G4603' => 'pso', 'PSO210G0182' => 'pso', 'PSO210G0196' => 'pso', 'PSO339G0394' => 'pso', 'PSO339G4127' => 'pso', 'PSO513G0064' => 'pso', 'PSO761G0079' => 'pso', 'QL01p031003' => 'qlo', 'QL01p031078' => 'qlo', 'QL06p003004' => 'qlo', 'QL07p048731' => 'qlo', 'QL09p037427' => 'qlo', 'RcHm_v2.0_Chr3g0466361' => 'rch', 'RcHm_v2.0_Chr3g0485571' => 'rch', 'RcHm_v2.0_Chr4g0416551' => 'rch', 'RcHm_v2.0_Chr5g0065831' => 'rch', 'Rhsim01G0230500' => 'rsi', 'Rhsim05G0194000' => 'rsi', 'Rhsim08G0250400' => 'rsi', 'Sabra02G0131000' => 'sbr', 'Sabra06G0066300' => 'sbr', 'Sabra08G0115500' => 'sbr', 'Sabra09G0023900' => 'sbr', 'Sabra10G0054000' => 'sbr', 'Sabra14G0081500' => 'sbr', 'Sabra16G0147100' => 'sbr', 'SalBow2G2957' => 'sbo', 'SalBow4G3320' => 'sbo', 'SalBow8G1894' => 'sbo', 'Sc07g0007950' => 'sci', 'Sc12g0001360' => 'sci', 'Sc13g0004330' => 'sci', 'Sc20g0005010' => 'sci', 'Sed0000361' => 'sed', 'Sed0001706' => 'sed', 'Sed0002422' => 'sed', 'Sed0004029' => 'sed', 'Sed0004602' => 'sed', 'Sed0004943' => 'sed', 'Sed0008646' => 'sed', 'Sed0023313' => 'sed', 'Sed0024843' => 'sed', 'SEGI_00081' => 'sgi', 'SEGI_00947' => 'sgi', 'SEGI_04046' => 'sgi', 'SEGI_06880' => 'sgi', 'SEGI_09736' => 'sgi', 'SEGI_12741' => 'sgi', 'SEGI_14530' => 'sgi', 'SEGI_20705' => 'sgi', 'SEGI_26088' => 'sgi', 'SEGI_28323' => 'sgi', 'SEGI_33343' => 'sgi', 'SGA_v2.0_scaffold126G33775' => 'sas', 'SGA_v2.0_scaffold2G01337' => 'sas', 'SGA_v2.0_scaffold38G15006' => 'sas', 'SGA_v2.0_scaffold39G15264' => 'sas', 'SGA_v2.0_scaffold453G51880' => 'sas', 'SHI12696' => 'shi', 'SMO367G1096' => 'smo', 'Solyc01g068630.3' => 'sly', 'Solyc05g011880.3' => 'sly', 'Solyc06g076300.3' => 'sly', 'Solyc09g010940.4' => 'sly', 'Solyc09g075890.3' => 'sly', 'Sopen01g030560' => 'spe', 'Sopen05g006630' => 'spe', 'Sopen06g032720' => 'spe', 'Sopen09g005660' => 'spe', 'Sopen09g030690' => 'spe', 'Sp4g14540' => 'spa', 'Sp4g20030' => 'spa', 'Sp5g01320' => 'spa', 'Sp6g21170' => 'spa', 'Sp6g21180' => 'spa', 'Sp6g21190' => 'spa', 'Sp6g40220' => 'spa', 'TAR362G0122' => 'tar', 'TAR362G1338' => 'tar', 'TAR369G0590' => 'tar', 'TAR371G0824' => 'tar', 'TAR622G1429' => 'tar', 'TAR623G0734' => 'tar', 'TAR625G0441' => 'tar', 'TAR629G0976' => 'tar', 'TAR633G1195' => 'tar', 'TAR636G2660' => 'tar', 'THA.LOC104799440' => 'tha', 'THA.LOC104800966' => 'tha', 'THA.LOC104806559' => 'tha', 'THA.LOC104810765' => 'tha', 'THA.LOC104816266' => 'tha', 'THA.LOC104817419' => 'tha', 'THA.LOC104827021' => 'tha', 'Thecc.01G327400' => 'tca', 'Thecc.04G229200' => 'tca', 'Thecc.05G037400' => 'tca', 'Thecc.09G318600' => 'tca', 'Thecc.09G318700' => 'tca', 'Thhalv10006238m.g' => 'esa', 'Thhalv10014321m.g' => 'esa', 'Thhalv10014335m.g' => 'esa', 'Thhalv10015826m.g' => 'esa', 'Thhalv10017107m.g' => 'esa', 'Thhalv10017180m.g' => 'esa', 'Thhalv10029339m.g' => 'esa', 'TPR.G1699' => 'tpr', 'TPR.G23609' => 'tpr', 'TPR.G3081' => 'tpr', 'TPR.G40397' => 'tpr', 'TPR.G5522' => 'tpr', 'TPR.G5618' => 'tpr', 'TPR.G5626' => 'tpr', 'TWI09G1632' => 'twi', 'TWI23G1230' => 'twi', 'TWI53G1064' => 'twi', 'TWI59G0751' => 'twi', 'TWI74G0947' => 'twi', 'TWI77G0337' => 'twi', 'TWI79G1254' => 'twi', 'unitig_0.g2341' => 'ugi', 'unitig_26.g10006' => 'ugi', 'unitig_26.g10008' => 'ugi', 'unitig_26.g9192' => 'ugi', 'vmacro14547' => 'vma', 'vmacro15333' => 'vma', 'vmacro18743' => 'vma', 'vmacro20166' => 'vma', 'VMungo0331G0523' => 'vmu', 'VMungo0331G1202' => 'vmu', 'VMungo0720G1228' => 'vmu', 'VMungo0720G1514' => 'vmu', 'VMungo1080G0169' => 'vmu', 'VMungo1127G1475' => 'vmu', 'VMungo1383G1208' => 'vmu', 'VMungo1383G1698' => 'vmu', 'Zm00001eb012270' => 'zma', 'Zm00001eb054100' => 'zma', 'Zm00001eb063350' => 'zma', 'Zm00001eb328560' => 'zma', 'Zm00001eb342820' => 'zma', 'Zm00001eb362210' => 'zma', 'Zm00001eb397730' => 'zma', 'Zm00001eb399750' => 'zma' ) $gf_id = 'HOM05D000959' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000959' ) $data_identifier = 'HOM05D000959' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 5, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 5, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 10, 'mbi' => (int) 3, 'mco' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 2, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 3, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 11, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399750' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000959', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '622', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p07100' => 'bna', 'A03p11720' => 'bna', 'A05p08300' => 'bna', 'A05p13380' => 'bna', 'A09p54130' => 'bna', 'A10p16690' => 'bna', 'A10p16700' => 'bna', 'A10p33390' => 'bna', 'Aa31LG10G16020' => 'aar', 'Aa31LG1G11810' => 'aar', 'Aa31LG1G11830' => 'aar', 'Aa31LG1G22510' => 'aar', 'Aa31LG5G4890' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5793' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2310' => 'aag', 'Actinidia08499' => 'ach', 'Actinidia11262' => 'ach', 'Actinidia23926' => 'ach', 'Actinidia34420' => 'ach', 'Actinidia36970' => 'ach', 'Ah.02g111220' => 'amhyb', 'Ah.15g097750' => 'amhyb', 'AL4G27500' => 'aly', 'AL6G11470' => 'aly', 'AL8G35950' => 'aly', 'AL8G35960' => 'aly', 'AL8G35970' => 'aly', 'Aqoxy1G00912' => 'aox', 'Aqoxy2G02253' => 'aox', 'Aqoxy2G02411' => 'aox', 'Aqoxy5G00485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BZ66YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K8ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM4FUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6BF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HFV7XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25JBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0YNNV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MAKK6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P70IT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP2Z6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V61LZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YWP64R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3S9AI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7PGHH' => 'arhy', 'AT2G32150' => 'ath', 'AT3G62040' => 'ath', 'AT5G02230' => 'ath', 'AT5G59480' => 'ath', 'AT5G59490' => 'ath', 'ATR0332G060' => 'atr', 'ATR0559G190' => 'atr', 'ATR0693G294' => 'atr', 'Atru.chr3.3975' => 'acertr', 'Atru.chr3.3976' => 'acertr', 'Atru.chr3.3977' => 'acertr', 'Atru.chr4.2498' => 'acertr', 'Atru.chr5.838' => 'acertr', 'Atru.chr8.1990' => 'acertr', 'Atru.chr8.1991' => 'acertr', 'Atru.chr8.1992' => 'acertr', 'AUR62001759' => 'cqu', 'AUR62009545' => 'cqu', 'AUR62010474' => 'cqu', 'AUR62025820' => 'cqu', 'AUR62030422' => 'cqu', 'AUR62033605' => 'cqu', 'AUR62038615' => 'cqu', 'AUR62041347' => 'cqu', 'BcaB01g04574' => 'bca', 'BcaB02g09263' => 'bca', 'BcaB02g10453' => 'bca', 'BcaB05g22513' => 'bca', 'BcaB08g36253' => 'bca', 'BcaB08g36254' => 'bca', 'BcaC01g06519' => 'bca', 'BcaC02g11889' => 'bca', 'BcaC03g14010' => 'bca', 'BcaC03g18439' => 'bca', 'BcaC04g19765' => 'bca', 'BcaC09g48432' => 'bca', 'BcaNung07302' => 'bca', 'BolC2t06040H' => 'bol', 'BolC2t07346H' => 'bol', 'BolC3t13817H' => 'bol', 'BolC4t22625H' => 'bol', 'BolC4t23297H' => 'bol', 'BolC8t51278H' => 'bol', 'BolC9t58050H' => 'bol', 'BolC9t58051H' => 'bol', 'BolC9t60163H' => 'bol', 'BraA02t04712Z' => 'bra', 'BraA02t05791Z' => 'bra', 'BraA03t10483Z' => 'bra', 'BraA05t19795Z' => 'bra', 'BraA05t20276Z' => 'bra', 'BraA09t40827Z' => 'bra', 'BraA10t43750Z' => 'bra', 'BraA10t43751Z' => 'bra', 'BraA10t45370Z' => 'bra', 'C02p00400' => 'bna', 'C02p12460' => 'bna', 'C03p13680' => 'bna', 'C04p10270' => 'bna', 'C04p17500' => 'bna', 'C08p37010' => 'bna', 'C09p51880' => 'bna', 'C09p51890' => 'bna', 'C09p74300' => 'bna', 'CAN.G179.26' => 'can', 'CAN.G3384.1' => 'can', 'CAN.G394.68' => 'can', 'CAN.G907.13' => 'can', 'CANSAT11G0012' => 'cansat', 'CANSAT25G1586' => 'cansat', 'CANSAT35G0735' => 'cansat', 'CANSAT54G0556' => 'cansat', 'CANSAT64G0356' => 'cansat', 'CANSAT78G2042' => 'cansat', 'CARHR125920' => 'chi', 'CARHR131910' => 'chi', 'CARHR172390' => 'chi', 'CARHR211140' => 'chi', 'CARHR285850' => 'chi', 'CARHR285860' => 'chi', 'Carub.0004s1347' => 'cru', 'Carub.0004s1960' => 'cru', 'Carub.0005s2880' => 'cru', 'Carub.0006s0107' => 'cru', 'Carub.0008s2015' => 'cru', 'Carub.0008s2016' => 'cru', 'Carub.0008s2017' => 'cru', 'Ca_01315_v3' => 'car', 'Ca_05063_v3' => 'car', 'Ca_10231_v3' => 'car', 'Ca_10913_v3' => 'car', 'Ca_19156_v3' => 'car', 'Ca_23644_v3' => 'car', 'Ca_26735_v3' => 'car', 'Cc01_g13130' => 'ccan', 'Cc02_g21690' => 'ccan', 'Cc03_g03600' => 'ccan', 'Cc06_g02510' => 'ccan', 'CDE02G1265' => 'cde', 'CDE05G0415' => 'cde', 'CDE08G1082' => 'cde', 'Cfa005780' => 'cfa', 'Cfa011522' => 'cfa', 'Cfa011523' => 'cfa', 'Cfa015627' => 'cfa', 'Cfa017359' => 'cfa', 'Ciclev10005687m.g' => 'ccl', 'Ciclev10012173m.g' => 'ccl', 'Ciclev10021621m.g' => 'ccl', 'Ciclev10028968m.g' => 'ccl', 'Ciclev10029907m.g' => 'ccl', 'CiPaw.01G164800' => 'cil', 'CiPaw.07G083700' => 'cil', 'CiPaw.07G127000' => 'cil', 'CiPaw.07G136900' => 'cil', 'CiPaw.08G081700' => 'cil', 'CiPaw.09G194600' => 'cil', 'CiPaw.10G146500' => 'cil', 'CiPaw.13G091500' => 'cil', 'CiPaw.13G091600' => 'cil', 'ClCG00G003390' => 'cla', 'ClCG01G007220' => 'cla', 'ClCG03G001370' => 'cla', 'ClCG04G008100' => 'cla', 'ClCG06G006110' => 'cla', 'ClCG06G006130' => 'cla', 'ClCG10G021210' => 'cla', 'COL.COLO4_07648' => 'col', 'COL.COLO4_07650' => 'col', 'COL.COLO4_07651' => 'col', 'COL.COLO4_14780' => 'col', 'COL.COLO4_18546' => 'col', 'COL.COLO4_18547' => 'col', 'COL.COLO4_23103' => 'col', 'COL.COLO4_30419' => 'col', 'COL.COLO4_34232' => 'col', 'Cpa.g.sc169.20' => 'cpa', 'Cpa.g.sc57.45' => 'cpa', 'Cpa.g.sc58.124' => 'cpa', 'Cpa.g.sc58.125' => 'cpa', 'Cpa.g.sc81.118' => 'cpa', 'Cpa.g.sc81.119' => 'cpa', 'Cre12.g524700' => 'cre', 'CsaV3_1G034430' => 'csa', 'CsaV3_1G034440' => 'csa', 'CsaV3_1G034450' => 'csa', 'CsaV3_3G034830' => 'csa', 'CsaV3_4G025090' => 'csa', 'CsaV3_5G018660' => 'csa', 'CsaV3_6G038160' => 'csa', 'CSS0003447' => 'camsi', 'CSS0017840' => 'camsi', 'CSS0019260' => 'camsi', 'CSS0040375' => 'camsi', 'CSS0042533' => 'camsi', 'DCAR_005960' => 'dca', 'DCAR_012104' => 'dca', 'DCAR_012105' => 'dca', 'DCAR_012293' => 'dca', 'DCAR_015632' => 'dca', 'DCAR_024602' => 'dca', 'DCAR_028752' => 'dca', 'Dinv06261' => 'din', 'Dinv13982' => 'din', 'Dinv17029' => 'din', 'Dinv18463' => 'din', 'Dinv33181' => 'din', 'Dinv35585' => 'din', 'Dinv37161' => 'din', 'Dinv42977' => 'din', 'Dinv43122' => 'din', 'Dinv44517' => 'din', 'Duzib093G0256' => 'dzi', 'Duzib106G1254' => 'dzi', 'Duzib128G1789' => 'dzi', 'Duzib133G0633' => 'dzi', 'Duzib138G0510' => 'dzi', 'Duzib150G1084' => 'dzi', 'Duzib168G0488' => 'dzi', 'Duzib168G1523' => 'dzi', 'Duzib170G0133' => 'dzi', 'ECA234G1433' => 'eca', 'ECA236G1432' => 'eca', 'ECA236G2256' => 'eca', 'ECA236G2365' => 'eca', 'ECA236G4830' => 'eca', 'ECA248G1505' => 'eca', 'EL10Ac3g06431' => 'bvu', 'EL10Ac5g12577' => 'bvu', 'EL10Ac6g13533' => 'bvu', 'EL10Ac7g16045' => 'bvu', 'Eucgr.A01281' => 'egr', 'Eucgr.B02326' => 'egr', 'Eucgr.H03532' => 'egr', 'Eucgr.K00553' => 'egr', 'Eucgr.K03116' => 'egr', 'FAN02G3963' => 'fan', 'FAN05G0438' => 'fan', 'FAN09G2434' => 'fan', 'FAN12G3984' => 'fan', 'FAN14G0798' => 'fan', 'FAN17G0652' => 'fan', 'FAN19G1988' => 'fan', 'FAN22G0632' => 'fan', 'FAN23G0387' => 'fan', 'FAN26G1323' => 'fan', 'FAN28G0666' => 'fan', 'FvH4_1g26080' => 'fve', 'FvH4_3g36780' => 'fve', 'FvH4_4g15270' => 'fve', 'FvH4_6g13490' => 'fve', 'Glyma.01G098700' => 'gma', 'Glyma.03G065900' => 'gma', 'Glyma.03G073754' => 'gma', 'Glyma.03G073758' => 'gma', 'Glyma.03G083200' => 'gma', 'Glyma.03G225500' => 'gma', 'Glyma.05G037766' => 'gma', 'Glyma.07G133500' => 'gma', 'Glyma.10G139400' => 'gma', 'Glyma.10G248900' => 'gma', 'Glyma.11G137800' => 'gma', 'Glyma.12G061300' => 'gma', 'Glyma.13G337900' => 'gma', 'Glyma.15G036600' => 'gma', 'Glyma.18G182800' => 'gma', 'Glyma.19G222500' => 'gma', 'Glyma.20G144800' => 'gma', 'Gohir.A01G222000' => 'ghi', 'Gohir.A03G044000' => 'ghi', 'Gohir.A03G044100' => 'ghi', 'Gohir.A04G083100' => 'ghi', 'Gohir.A07G127200' => 'ghi', 'Gohir.A07G132400' => 'ghi', 'Gohir.A08G000700' => 'ghi', 'Gohir.A11G327300' => 'ghi', 'Gohir.D01G211500' => 'ghi', 'Gohir.D03G123400' => 'ghi', 'Gohir.D03G123500' => 'ghi', 'Gohir.D04G121800' => 'ghi', 'Gohir.D07G131500' => 'ghi', 'Gohir.D07G136600' => 'ghi', 'Gohir.D08G011600' => 'ghi', 'Gohir.D11G346200' => 'ghi', 'Gorai.001G142800' => 'gra', 'Gorai.001G148700' => 'gra', 'Gorai.002G257300' => 'gra', 'Gorai.003G130000' => 'gra', 'Gorai.003G130100' => 'gra', 'Gorai.004G005300' => 'gra', 'Gorai.007G376500' => 'gra', 'Gorai.012G104700' => 'gra', 'GSVIVG01017946001' => 'vvi', 'GSVIVG01024928001' => 'vvi', 'GSVIVG01028227001' => 'vvi', 'GSVIVG01034151001' => 'vvi', 'HanXRQChr05g0135031' => 'han', 'HanXRQChr05g0135041' => 'han', 'HanXRQChr05g0140021' => 'han', 'HanXRQChr06g0178981' => 'han', 'HanXRQChr07g0188251' => 'han', 'HanXRQChr08g0235311' => 'han', 'HanXRQChr09g0271011' => 'han', 'HanXRQChr10g0293321' => 'han', 'HanXRQChr13g0388171' => 'han', 'Haze_00916' => 'cav', 'Haze_05063' => 'cav', 'Haze_20814' => 'cav', 'Haze_24128' => 'cav', 'Hma1.2p1_0745F.1_g212010' => 'hma', 'Hma1.2p1_0757F.1_g213260' => 'hma', 'Hma1.2p1_0936F.1_g238840' => 'hma', 'Hma1.2p1_1735F.1_g299890' => 'hma', 'Hma1.2p1_1861F.1_g305685' => 'hma', 'HPP92_003397' => 'vpl', 'HPP92_012597' => 'vpl', 'HPP92_015520' => 'vpl', 'HPP92_015539' => 'vpl', 'HPP92_020373' => 'vpl', 'Hund04938' => 'sun', 'Hund10677' => 'sun', 'Hund11033' => 'sun', 'Hund12155' => 'sun', 'Lalb_Chr01g0022551' => 'lal', 'Lalb_Chr03g0042341' => 'lal', 'Lalb_Chr07g0192931' => 'lal', 'Lalb_Chr12g0209551' => 'lal', 'Lalb_Chr19g0125251' => 'lal', 'Lalb_Chr19g0137891' => 'lal', 'Lalb_Chr21g0304641' => 'lal', 'Lalb_Chr21g0309881' => 'lal', 'Lj1A5T12' => 'lonja', 'Lj1C148G10' => 'lonja', 'Lj2A93T83' => 'lonja', 'Lj3A738G68' => 'lonja', 'Lj3C966T1' => 'lonja', 'Lj3g0018958' => 'lja', 'Lj3g0021831' => 'lja', 'Lj3g0025443' => 'lja', 'Lj4g0026809' => 'lja', 'Lj5g0012558' => 'lja', 'Lj5g0021586' => 'lja', 'Lsat_1_v5_gn_5_156840' => 'lsa', 'Lsat_1_v5_gn_8_73460' => 'lsa', 'Lsat_1_v5_gn_8_73481' => 'lsa', 'Lsat_1_v5_gn_9_31601' => 'lsa', 'Lsat_1_v5_gn_9_77320' => 'lsa', 'Manes.01G171300' => 'mes', 'Manes.01G171400' => 'mes', 'Manes.01G236100' => 'mes', 'Manes.02G130500' => 'mes', 'Manes.02G130600' => 'mes', 'Manes.03G180200' => 'mes', 'Manes.05G007000' => 'mes', 'Manes.08G084400' => 'mes', 'Manes.09G092600' => 'mes', 'Manes.15G027900' => 'mes', 'MBI04_g40948_MAGBIO' => 'mbi', 'MBI14_g12123_MAGBIO' => 'mbi', 'MBI18_g28915_MAGBIO' => 'mbi', 'MCO09G053' => 'mco', 'MCO11G782' => 'mco', 'MCO15G215' => 'mco', 'MD03G1088500' => 'mdo', 'MD03G1088600' => 'mdo', 'MD04G1130800' => 'mdo', 'MD09G1291700' => 'mdo', 'MD11G1097500' => 'mdo', 'MD11G1097600' => 'mdo', 'MD12G1143900' => 'mdo', 'MD13G1191400' => 'mdo', 'MD16G1191500' => 'mdo', 'Medtr1g085570' => 'mtr', 'Medtr1g104610' => 'mtr', 'Medtr2g097520' => 'mtr', 'Medtr4g021800' => 'mtr', 'Medtr4g021825' => 'mtr', 'Medtr4g064270' => 'mtr', 'Medtr4g064380' => 'mtr', 'Medtr7g062150' => 'mtr', 'MELO3C003138.2' => 'cme', 'MELO3C005187.2' => 'cme', 'MELO3C009252.2' => 'cme', 'MELO3C014481.2' => 'cme', 'MELO3C020616.2' => 'cme', 'MELO3C020617.2' => 'cme', 'MELO3C020618.2' => 'cme', 'Migut.G00328' => 'egut', 'Migut.J00320' => 'egut', 'Migut.L01000' => 'egut', 'Migut.L01953' => 'egut', 'MSTRG.10253' => 'ama', 'MSTRG.19077' => 'ama', 'MSTRG.26780' => 'ama', 'MSTRG.4023' => 'ama', 'MSTRG.5655' => 'ama', 'MSTRG.9992' => 'ama', 'Nitab4.5_0000043g0310' => 'nta', 'Nitab4.5_0000463g0080' => 'nta', 'Nitab4.5_0000705g0170' => 'nta', 'Nitab4.5_0001326g0060' => 'nta', 'Nitab4.5_0001628g0030' => 'nta', 'Nitab4.5_0002103g0110' => 'nta', 'Nitab4.5_0002946g0030' => 'nta', 'Nitab4.5_0004639g0030' => 'nta', 'Nn2g11149' => 'nnu', 'Nn2g13389' => 'nnu', 'Nn4g25326' => 'nnu', 'Nn4g26290' => 'nnu', 'Nn5g29865' => 'nnu', 'Oeu004163.1' => 'oeu', 'Oeu006901.1' => 'oeu', 'Oeu010096.1' => 'oeu', 'Oeu024340.1' => 'oeu', 'Oeu048369.1' => 'oeu', 'Os01g0973000' => 'osa', 'Os03g0273800' => 'osa', 'Os03g0701200' => 'osa', 'Os03g0834050' => 'osa', 'Os07g0634400' => 'osa', 'Peaxi162Scf00092g01414' => 'pax', 'Peaxi162Scf00165g00818' => 'pax', 'Peaxi162Scf00309g00516' => 'pax', 'Peaxi162Scf00774g00218' => 'pax', 'PGR004G1824' => 'pgr', 'PGR004G2606' => 'pgr', 'PGR031G2716' => 'pgr', 'PGR102G2460' => 'pgr', 'PGR142G2599' => 'pgr', 'PGSC0003DMG400000843' => 'stu', 'PGSC0003DMG400008829' => 'stu', 'PGSC0003DMG400030418' => 'stu', 'PGSC0003DMG400031834' => 'stu', 'PGSC0003DMG401028300' => 'stu', 'PGSC0003DMG402028300' => 'stu', 'Phvul.001G219300' => 'pvu', 'Phvul.007G056000' => 'pvu', 'Phvul.007G208000' => 'pvu', 'Phvul.008G119500' => 'pvu', 'Phvul.010G011200' => 'pvu', 'Phvul.010G014800' => 'pvu', 'Phvul.011G062900' => 'pvu', 'Phvul.L007043' => 'pvu', 'Potri.001G242300' => 'ptr', 'Potri.002G185300' => 'ptr', 'Potri.006G086900' => 'ptr', 'Potri.008G151700' => 'ptr', 'Potri.009G033500' => 'ptr', 'Potri.010G089300' => 'ptr', 'Potri.014G110800' => 'ptr', 'Pp3c27_8130' => 'ppa', 'Pp3c6_27410' => 'ppa', 'PRCOL_00001659' => 'pco', 'PRCOL_00001927' => 'pco', 'PRCOL_00003649' => 'pco', 'Prupe.1G011600' => 'ppe', 'Prupe.3G000800' => 'ppe', 'Prupe.3G001100' => 'ppe', 'Prupe.6G072700' => 'ppe', 'Prupe.6G072800' => 'ppe', 'Prupe.6G257300' => 'ppe', 'Prupe.8G033000' => 'ppe', 'Psat0s2633g0080' => 'psa', 'Psat0s3396g0080' => 'psa', 'Psat0s3396g0200' => 'psa', 'Psat3g139080' => 'psa', 'Psat5g285080' => 'psa', 'Psat6g157760' => 'psa', 'Psat6g208440' => 'psa', 'Psat7g215320' => 'psa', 'Psat7g215400' => 'psa', 'Psat7g235600' => 'psa', 'Psat7g235760' => 'psa', 'PSO063G4603' => 'pso', 'PSO210G0182' => 'pso', 'PSO210G0196' => 'pso', 'PSO339G0394' => 'pso', 'PSO339G4127' => 'pso', 'PSO513G0064' => 'pso', 'PSO761G0079' => 'pso', 'QL01p031003' => 'qlo', 'QL01p031078' => 'qlo', 'QL06p003004' => 'qlo', 'QL07p048731' => 'qlo', 'QL09p037427' => 'qlo', 'RcHm_v2.0_Chr3g0466361' => 'rch', 'RcHm_v2.0_Chr3g0485571' => 'rch', 'RcHm_v2.0_Chr4g0416551' => 'rch', 'RcHm_v2.0_Chr5g0065831' => 'rch', 'Rhsim01G0230500' => 'rsi', 'Rhsim05G0194000' => 'rsi', 'Rhsim08G0250400' => 'rsi', 'Sabra02G0131000' => 'sbr', 'Sabra06G0066300' => 'sbr', 'Sabra08G0115500' => 'sbr', 'Sabra09G0023900' => 'sbr', 'Sabra10G0054000' => 'sbr', 'Sabra14G0081500' => 'sbr', 'Sabra16G0147100' => 'sbr', 'SalBow2G2957' => 'sbo', 'SalBow4G3320' => 'sbo', 'SalBow8G1894' => 'sbo', 'Sc07g0007950' => 'sci', 'Sc12g0001360' => 'sci', 'Sc13g0004330' => 'sci', 'Sc20g0005010' => 'sci', 'Sed0000361' => 'sed', 'Sed0001706' => 'sed', 'Sed0002422' => 'sed', 'Sed0004029' => 'sed', 'Sed0004602' => 'sed', 'Sed0004943' => 'sed', 'Sed0008646' => 'sed', 'Sed0023313' => 'sed', 'Sed0024843' => 'sed', 'SEGI_00081' => 'sgi', 'SEGI_00947' => 'sgi', 'SEGI_04046' => 'sgi', 'SEGI_06880' => 'sgi', 'SEGI_09736' => 'sgi', 'SEGI_12741' => 'sgi', 'SEGI_14530' => 'sgi', 'SEGI_20705' => 'sgi', 'SEGI_26088' => 'sgi', 'SEGI_28323' => 'sgi', 'SEGI_33343' => 'sgi', 'SGA_v2.0_scaffold126G33775' => 'sas', 'SGA_v2.0_scaffold2G01337' => 'sas', 'SGA_v2.0_scaffold38G15006' => 'sas', 'SGA_v2.0_scaffold39G15264' => 'sas', 'SGA_v2.0_scaffold453G51880' => 'sas', 'SHI12696' => 'shi', 'SMO367G1096' => 'smo', 'Solyc01g068630.3' => 'sly', 'Solyc05g011880.3' => 'sly', 'Solyc06g076300.3' => 'sly', 'Solyc09g010940.4' => 'sly', 'Solyc09g075890.3' => 'sly', 'Sopen01g030560' => 'spe', 'Sopen05g006630' => 'spe', 'Sopen06g032720' => 'spe', 'Sopen09g005660' => 'spe', 'Sopen09g030690' => 'spe', 'Sp4g14540' => 'spa', 'Sp4g20030' => 'spa', 'Sp5g01320' => 'spa', 'Sp6g21170' => 'spa', 'Sp6g21180' => 'spa', 'Sp6g21190' => 'spa', 'Sp6g40220' => 'spa', 'TAR362G0122' => 'tar', 'TAR362G1338' => 'tar', 'TAR369G0590' => 'tar', 'TAR371G0824' => 'tar', 'TAR622G1429' => 'tar', 'TAR623G0734' => 'tar', 'TAR625G0441' => 'tar', 'TAR629G0976' => 'tar', 'TAR633G1195' => 'tar', 'TAR636G2660' => 'tar', 'THA.LOC104799440' => 'tha', 'THA.LOC104800966' => 'tha', 'THA.LOC104806559' => 'tha', 'THA.LOC104810765' => 'tha', 'THA.LOC104816266' => 'tha', 'THA.LOC104817419' => 'tha', 'THA.LOC104827021' => 'tha', 'Thecc.01G327400' => 'tca', 'Thecc.04G229200' => 'tca', 'Thecc.05G037400' => 'tca', 'Thecc.09G318600' => 'tca', 'Thecc.09G318700' => 'tca', 'Thhalv10006238m.g' => 'esa', 'Thhalv10014321m.g' => 'esa', 'Thhalv10014335m.g' => 'esa', 'Thhalv10015826m.g' => 'esa', 'Thhalv10017107m.g' => 'esa', 'Thhalv10017180m.g' => 'esa', 'Thhalv10029339m.g' => 'esa', 'TPR.G1699' => 'tpr', 'TPR.G23609' => 'tpr', 'TPR.G3081' => 'tpr', 'TPR.G40397' => 'tpr', 'TPR.G5522' => 'tpr', 'TPR.G5618' => 'tpr', 'TPR.G5626' => 'tpr', 'TWI09G1632' => 'twi', 'TWI23G1230' => 'twi', 'TWI53G1064' => 'twi', 'TWI59G0751' => 'twi', 'TWI74G0947' => 'twi', 'TWI77G0337' => 'twi', 'TWI79G1254' => 'twi', 'unitig_0.g2341' => 'ugi', 'unitig_26.g10006' => 'ugi', 'unitig_26.g10008' => 'ugi', 'unitig_26.g9192' => 'ugi', 'vmacro14547' => 'vma', 'vmacro15333' => 'vma', 'vmacro18743' => 'vma', 'vmacro20166' => 'vma', 'VMungo0331G0523' => 'vmu', 'VMungo0331G1202' => 'vmu', 'VMungo0720G1228' => 'vmu', 'VMungo0720G1514' => 'vmu', 'VMungo1080G0169' => 'vmu', 'VMungo1127G1475' => 'vmu', 'VMungo1383G1208' => 'vmu', 'VMungo1383G1698' => 'vmu', 'Zm00001eb012270' => 'zma', 'Zm00001eb054100' => 'zma', 'Zm00001eb063350' => 'zma', 'Zm00001eb328560' => 'zma', 'Zm00001eb342820' => 'zma', 'Zm00001eb362210' => 'zma', 'Zm00001eb397730' => 'zma', 'Zm00001eb399750' => 'zma' ), 'gf_id' => 'HOM05D000959', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000959' ), 'data_identifier' => 'HOM05D000959', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000959', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '622', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p07100' => 'bna', 'A03p11720' => 'bna', 'A05p08300' => 'bna', 'A05p13380' => 'bna', 'A09p54130' => 'bna', 'A10p16690' => 'bna', 'A10p16700' => 'bna', 'A10p33390' => 'bna', 'Aa31LG10G16020' => 'aar', 'Aa31LG1G11810' => 'aar', 'Aa31LG1G11830' => 'aar', 'Aa31LG1G22510' => 'aar', 'Aa31LG5G4890' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5793' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2310' => 'aag', 'Actinidia08499' => 'ach', 'Actinidia11262' => 'ach', 'Actinidia23926' => 'ach', 'Actinidia34420' => 'ach', 'Actinidia36970' => 'ach', 'Ah.02g111220' => 'amhyb', 'Ah.15g097750' => 'amhyb', 'AL4G27500' => 'aly', 'AL6G11470' => 'aly', 'AL8G35950' => 'aly', 'AL8G35960' => 'aly', 'AL8G35970' => 'aly', 'Aqoxy1G00912' => 'aox', 'Aqoxy2G02253' => 'aox', 'Aqoxy2G02411' => 'aox', 'Aqoxy5G00485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BZ66YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K8ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM4FUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6BF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HFV7XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25JBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0YNNV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MAKK6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P70IT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP2Z6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V61LZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YWP64R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3S9AI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7PGHH' => 'arhy', 'AT2G32150' => 'ath', 'AT3G62040' => 'ath', 'AT5G02230' => 'ath', 'AT5G59480' => 'ath', 'AT5G59490' => 'ath', 'ATR0332G060' => 'atr', 'ATR0559G190' => 'atr', 'ATR0693G294' => 'atr', 'Atru.chr3.3975' => 'acertr', 'Atru.chr3.3976' => 'acertr', 'Atru.chr3.3977' => 'acertr', 'Atru.chr4.2498' => 'acertr', 'Atru.chr5.838' => 'acertr', 'Atru.chr8.1990' => 'acertr', 'Atru.chr8.1991' => 'acertr', 'Atru.chr8.1992' => 'acertr', 'AUR62001759' => 'cqu', 'AUR62009545' => 'cqu', 'AUR62010474' => 'cqu', 'AUR62025820' => 'cqu', 'AUR62030422' => 'cqu', 'AUR62033605' => 'cqu', 'AUR62038615' => 'cqu', 'AUR62041347' => 'cqu', 'BcaB01g04574' => 'bca', 'BcaB02g09263' => 'bca', 'BcaB02g10453' => 'bca', 'BcaB05g22513' => 'bca', 'BcaB08g36253' => 'bca', 'BcaB08g36254' => 'bca', 'BcaC01g06519' => 'bca', 'BcaC02g11889' => 'bca', 'BcaC03g14010' => 'bca', 'BcaC03g18439' => 'bca', 'BcaC04g19765' => 'bca', 'BcaC09g48432' => 'bca', 'BcaNung07302' => 'bca', 'BolC2t06040H' => 'bol', 'BolC2t07346H' => 'bol', 'BolC3t13817H' => 'bol', 'BolC4t22625H' => 'bol', 'BolC4t23297H' => 'bol', 'BolC8t51278H' => 'bol', 'BolC9t58050H' => 'bol', 'BolC9t58051H' => 'bol', 'BolC9t60163H' => 'bol', 'BraA02t04712Z' => 'bra', 'BraA02t05791Z' => 'bra', 'BraA03t10483Z' => 'bra', 'BraA05t19795Z' => 'bra', 'BraA05t20276Z' => 'bra', 'BraA09t40827Z' => 'bra', 'BraA10t43750Z' => 'bra', 'BraA10t43751Z' => 'bra', 'BraA10t45370Z' => 'bra', 'C02p00400' => 'bna', 'C02p12460' => 'bna', 'C03p13680' => 'bna', 'C04p10270' => 'bna', 'C04p17500' => 'bna', 'C08p37010' => 'bna', 'C09p51880' => 'bna', 'C09p51890' => 'bna', 'C09p74300' => 'bna', 'CAN.G179.26' => 'can', 'CAN.G3384.1' => 'can', 'CAN.G394.68' => 'can', 'CAN.G907.13' => 'can', 'CANSAT11G0012' => 'cansat', 'CANSAT25G1586' => 'cansat', 'CANSAT35G0735' => 'cansat', 'CANSAT54G0556' => 'cansat', 'CANSAT64G0356' => 'cansat', 'CANSAT78G2042' => 'cansat', 'CARHR125920' => 'chi', 'CARHR131910' => 'chi', 'CARHR172390' => 'chi', 'CARHR211140' => 'chi', 'CARHR285850' => 'chi', 'CARHR285860' => 'chi', 'Carub.0004s1347' => 'cru', 'Carub.0004s1960' => 'cru', 'Carub.0005s2880' => 'cru', 'Carub.0006s0107' => 'cru', 'Carub.0008s2015' => 'cru', 'Carub.0008s2016' => 'cru', 'Carub.0008s2017' => 'cru', 'Ca_01315_v3' => 'car', 'Ca_05063_v3' => 'car', 'Ca_10231_v3' => 'car', 'Ca_10913_v3' => 'car', 'Ca_19156_v3' => 'car', 'Ca_23644_v3' => 'car', 'Ca_26735_v3' => 'car', 'Cc01_g13130' => 'ccan', 'Cc02_g21690' => 'ccan', 'Cc03_g03600' => 'ccan', 'Cc06_g02510' => 'ccan', 'CDE02G1265' => 'cde', 'CDE05G0415' => 'cde', 'CDE08G1082' => 'cde', 'Cfa005780' => 'cfa', 'Cfa011522' => 'cfa', 'Cfa011523' => 'cfa', 'Cfa015627' => 'cfa', 'Cfa017359' => 'cfa', 'Ciclev10005687m.g' => 'ccl', 'Ciclev10012173m.g' => 'ccl', 'Ciclev10021621m.g' => 'ccl', 'Ciclev10028968m.g' => 'ccl', 'Ciclev10029907m.g' => 'ccl', 'CiPaw.01G164800' => 'cil', 'CiPaw.07G083700' => 'cil', 'CiPaw.07G127000' => 'cil', 'CiPaw.07G136900' => 'cil', 'CiPaw.08G081700' => 'cil', 'CiPaw.09G194600' => 'cil', 'CiPaw.10G146500' => 'cil', 'CiPaw.13G091500' => 'cil', 'CiPaw.13G091600' => 'cil', 'ClCG00G003390' => 'cla', 'ClCG01G007220' => 'cla', 'ClCG03G001370' => 'cla', 'ClCG04G008100' => 'cla', 'ClCG06G006110' => 'cla', 'ClCG06G006130' => 'cla', 'ClCG10G021210' => 'cla', 'COL.COLO4_07648' => 'col', 'COL.COLO4_07650' => 'col', 'COL.COLO4_07651' => 'col', 'COL.COLO4_14780' => 'col', 'COL.COLO4_18546' => 'col', 'COL.COLO4_18547' => 'col', 'COL.COLO4_23103' => 'col', 'COL.COLO4_30419' => 'col', 'COL.COLO4_34232' => 'col', 'Cpa.g.sc169.20' => 'cpa', 'Cpa.g.sc57.45' => 'cpa', 'Cpa.g.sc58.124' => 'cpa', 'Cpa.g.sc58.125' => 'cpa', 'Cpa.g.sc81.118' => 'cpa', 'Cpa.g.sc81.119' => 'cpa', 'Cre12.g524700' => 'cre', 'CsaV3_1G034430' => 'csa', 'CsaV3_1G034440' => 'csa', 'CsaV3_1G034450' => 'csa', 'CsaV3_3G034830' => 'csa', 'CsaV3_4G025090' => 'csa', 'CsaV3_5G018660' => 'csa', 'CsaV3_6G038160' => 'csa', 'CSS0003447' => 'camsi', 'CSS0017840' => 'camsi', 'CSS0019260' => 'camsi', 'CSS0040375' => 'camsi', 'CSS0042533' => 'camsi', 'DCAR_005960' => 'dca', 'DCAR_012104' => 'dca', 'DCAR_012105' => 'dca', 'DCAR_012293' => 'dca', 'DCAR_015632' => 'dca', 'DCAR_024602' => 'dca', 'DCAR_028752' => 'dca', 'Dinv06261' => 'din', 'Dinv13982' => 'din', 'Dinv17029' => 'din', 'Dinv18463' => 'din', 'Dinv33181' => 'din', 'Dinv35585' => 'din', 'Dinv37161' => 'din', 'Dinv42977' => 'din', 'Dinv43122' => 'din', 'Dinv44517' => 'din', 'Duzib093G0256' => 'dzi', 'Duzib106G1254' => 'dzi', 'Duzib128G1789' => 'dzi', 'Duzib133G0633' => 'dzi', 'Duzib138G0510' => 'dzi', 'Duzib150G1084' => 'dzi', 'Duzib168G0488' => 'dzi', 'Duzib168G1523' => 'dzi', 'Duzib170G0133' => 'dzi', 'ECA234G1433' => 'eca', 'ECA236G1432' => 'eca', 'ECA236G2256' => 'eca', 'ECA236G2365' => 'eca', 'ECA236G4830' => 'eca', 'ECA248G1505' => 'eca', 'EL10Ac3g06431' => 'bvu', 'EL10Ac5g12577' => 'bvu', 'EL10Ac6g13533' => 'bvu', 'EL10Ac7g16045' => 'bvu', 'Eucgr.A01281' => 'egr', 'Eucgr.B02326' => 'egr', 'Eucgr.H03532' => 'egr', 'Eucgr.K00553' => 'egr', 'Eucgr.K03116' => 'egr', 'FAN02G3963' => 'fan', 'FAN05G0438' => 'fan', 'FAN09G2434' => 'fan', 'FAN12G3984' => 'fan', 'FAN14G0798' => 'fan', 'FAN17G0652' => 'fan', 'FAN19G1988' => 'fan', 'FAN22G0632' => 'fan', 'FAN23G0387' => 'fan', 'FAN26G1323' => 'fan', 'FAN28G0666' => 'fan', 'FvH4_1g26080' => 'fve', 'FvH4_3g36780' => 'fve', 'FvH4_4g15270' => 'fve', 'FvH4_6g13490' => 'fve', 'Glyma.01G098700' => 'gma', 'Glyma.03G065900' => 'gma', 'Glyma.03G073754' => 'gma', 'Glyma.03G073758' => 'gma', 'Glyma.03G083200' => 'gma', 'Glyma.03G225500' => 'gma', 'Glyma.05G037766' => 'gma', 'Glyma.07G133500' => 'gma', 'Glyma.10G139400' => 'gma', 'Glyma.10G248900' => 'gma', 'Glyma.11G137800' => 'gma', 'Glyma.12G061300' => 'gma', 'Glyma.13G337900' => 'gma', 'Glyma.15G036600' => 'gma', 'Glyma.18G182800' => 'gma', 'Glyma.19G222500' => 'gma', 'Glyma.20G144800' => 'gma', 'Gohir.A01G222000' => 'ghi', 'Gohir.A03G044000' => 'ghi', 'Gohir.A03G044100' => 'ghi', 'Gohir.A04G083100' => 'ghi', 'Gohir.A07G127200' => 'ghi', 'Gohir.A07G132400' => 'ghi', 'Gohir.A08G000700' => 'ghi', 'Gohir.A11G327300' => 'ghi', 'Gohir.D01G211500' => 'ghi', 'Gohir.D03G123400' => 'ghi', 'Gohir.D03G123500' => 'ghi', 'Gohir.D04G121800' => 'ghi', 'Gohir.D07G131500' => 'ghi', 'Gohir.D07G136600' => 'ghi', 'Gohir.D08G011600' => 'ghi', 'Gohir.D11G346200' => 'ghi', 'Gorai.001G142800' => 'gra', 'Gorai.001G148700' => 'gra', 'Gorai.002G257300' => 'gra', 'Gorai.003G130000' => 'gra', 'Gorai.003G130100' => 'gra', 'Gorai.004G005300' => 'gra', 'Gorai.007G376500' => 'gra', 'Gorai.012G104700' => 'gra', 'GSVIVG01017946001' => 'vvi', 'GSVIVG01024928001' => 'vvi', 'GSVIVG01028227001' => 'vvi', 'GSVIVG01034151001' => 'vvi', 'HanXRQChr05g0135031' => 'han', 'HanXRQChr05g0135041' => 'han', 'HanXRQChr05g0140021' => 'han', 'HanXRQChr06g0178981' => 'han', 'HanXRQChr07g0188251' => 'han', 'HanXRQChr08g0235311' => 'han', 'HanXRQChr09g0271011' => 'han', 'HanXRQChr10g0293321' => 'han', 'HanXRQChr13g0388171' => 'han', 'Haze_00916' => 'cav', 'Haze_05063' => 'cav', 'Haze_20814' => 'cav', 'Haze_24128' => 'cav', 'Hma1.2p1_0745F.1_g212010' => 'hma', 'Hma1.2p1_0757F.1_g213260' => 'hma', 'Hma1.2p1_0936F.1_g238840' => 'hma', 'Hma1.2p1_1735F.1_g299890' => 'hma', 'Hma1.2p1_1861F.1_g305685' => 'hma', 'HPP92_003397' => 'vpl', 'HPP92_012597' => 'vpl', 'HPP92_015520' => 'vpl', 'HPP92_015539' => 'vpl', 'HPP92_020373' => 'vpl', 'Hund04938' => 'sun', 'Hund10677' => 'sun', 'Hund11033' => 'sun', 'Hund12155' => 'sun', 'Lalb_Chr01g0022551' => 'lal', 'Lalb_Chr03g0042341' => 'lal', 'Lalb_Chr07g0192931' => 'lal', 'Lalb_Chr12g0209551' => 'lal', 'Lalb_Chr19g0125251' => 'lal', 'Lalb_Chr19g0137891' => 'lal', 'Lalb_Chr21g0304641' => 'lal', 'Lalb_Chr21g0309881' => 'lal', 'Lj1A5T12' => 'lonja', 'Lj1C148G10' => 'lonja', 'Lj2A93T83' => 'lonja', 'Lj3A738G68' => 'lonja', 'Lj3C966T1' => 'lonja', 'Lj3g0018958' => 'lja', 'Lj3g0021831' => 'lja', 'Lj3g0025443' => 'lja', 'Lj4g0026809' => 'lja', 'Lj5g0012558' => 'lja', 'Lj5g0021586' => 'lja', 'Lsat_1_v5_gn_5_156840' => 'lsa', 'Lsat_1_v5_gn_8_73460' => 'lsa', 'Lsat_1_v5_gn_8_73481' => 'lsa', 'Lsat_1_v5_gn_9_31601' => 'lsa', 'Lsat_1_v5_gn_9_77320' => 'lsa', 'Manes.01G171300' => 'mes', 'Manes.01G171400' => 'mes', 'Manes.01G236100' => 'mes', 'Manes.02G130500' => 'mes', 'Manes.02G130600' => 'mes', 'Manes.03G180200' => 'mes', 'Manes.05G007000' => 'mes', 'Manes.08G084400' => 'mes', 'Manes.09G092600' => 'mes', 'Manes.15G027900' => 'mes', 'MBI04_g40948_MAGBIO' => 'mbi', 'MBI14_g12123_MAGBIO' => 'mbi', 'MBI18_g28915_MAGBIO' => 'mbi', 'MCO09G053' => 'mco', 'MCO11G782' => 'mco', 'MCO15G215' => 'mco', 'MD03G1088500' => 'mdo', 'MD03G1088600' => 'mdo', 'MD04G1130800' => 'mdo', 'MD09G1291700' => 'mdo', 'MD11G1097500' => 'mdo', 'MD11G1097600' => 'mdo', 'MD12G1143900' => 'mdo', 'MD13G1191400' => 'mdo', 'MD16G1191500' => 'mdo', 'Medtr1g085570' => 'mtr', 'Medtr1g104610' => 'mtr', 'Medtr2g097520' => 'mtr', 'Medtr4g021800' => 'mtr', 'Medtr4g021825' => 'mtr', 'Medtr4g064270' => 'mtr', 'Medtr4g064380' => 'mtr', 'Medtr7g062150' => 'mtr', 'MELO3C003138.2' => 'cme', 'MELO3C005187.2' => 'cme', 'MELO3C009252.2' => 'cme', 'MELO3C014481.2' => 'cme', 'MELO3C020616.2' => 'cme', 'MELO3C020617.2' => 'cme', 'MELO3C020618.2' => 'cme', 'Migut.G00328' => 'egut', 'Migut.J00320' => 'egut', 'Migut.L01000' => 'egut', 'Migut.L01953' => 'egut', 'MSTRG.10253' => 'ama', 'MSTRG.19077' => 'ama', 'MSTRG.26780' => 'ama', 'MSTRG.4023' => 'ama', 'MSTRG.5655' => 'ama', 'MSTRG.9992' => 'ama', 'Nitab4.5_0000043g0310' => 'nta', 'Nitab4.5_0000463g0080' => 'nta', 'Nitab4.5_0000705g0170' => 'nta', 'Nitab4.5_0001326g0060' => 'nta', 'Nitab4.5_0001628g0030' => 'nta', 'Nitab4.5_0002103g0110' => 'nta', 'Nitab4.5_0002946g0030' => 'nta', 'Nitab4.5_0004639g0030' => 'nta', 'Nn2g11149' => 'nnu', 'Nn2g13389' => 'nnu', 'Nn4g25326' => 'nnu', 'Nn4g26290' => 'nnu', 'Nn5g29865' => 'nnu', 'Oeu004163.1' => 'oeu', 'Oeu006901.1' => 'oeu', 'Oeu010096.1' => 'oeu', 'Oeu024340.1' => 'oeu', 'Oeu048369.1' => 'oeu', 'Os01g0973000' => 'osa', 'Os03g0273800' => 'osa', 'Os03g0701200' => 'osa', 'Os03g0834050' => 'osa', 'Os07g0634400' => 'osa', 'Peaxi162Scf00092g01414' => 'pax', 'Peaxi162Scf00165g00818' => 'pax', 'Peaxi162Scf00309g00516' => 'pax', 'Peaxi162Scf00774g00218' => 'pax', 'PGR004G1824' => 'pgr', 'PGR004G2606' => 'pgr', 'PGR031G2716' => 'pgr', 'PGR102G2460' => 'pgr', 'PGR142G2599' => 'pgr', 'PGSC0003DMG400000843' => 'stu', 'PGSC0003DMG400008829' => 'stu', 'PGSC0003DMG400030418' => 'stu', 'PGSC0003DMG400031834' => 'stu', 'PGSC0003DMG401028300' => 'stu', 'PGSC0003DMG402028300' => 'stu', 'Phvul.001G219300' => 'pvu', 'Phvul.007G056000' => 'pvu', 'Phvul.007G208000' => 'pvu', 'Phvul.008G119500' => 'pvu', 'Phvul.010G011200' => 'pvu', 'Phvul.010G014800' => 'pvu', 'Phvul.011G062900' => 'pvu', 'Phvul.L007043' => 'pvu', 'Potri.001G242300' => 'ptr', 'Potri.002G185300' => 'ptr', 'Potri.006G086900' => 'ptr', 'Potri.008G151700' => 'ptr', 'Potri.009G033500' => 'ptr', 'Potri.010G089300' => 'ptr', 'Potri.014G110800' => 'ptr', 'Pp3c27_8130' => 'ppa', 'Pp3c6_27410' => 'ppa', 'PRCOL_00001659' => 'pco', 'PRCOL_00001927' => 'pco', 'PRCOL_00003649' => 'pco', 'Prupe.1G011600' => 'ppe', 'Prupe.3G000800' => 'ppe', 'Prupe.3G001100' => 'ppe', 'Prupe.6G072700' => 'ppe', 'Prupe.6G072800' => 'ppe', 'Prupe.6G257300' => 'ppe', 'Prupe.8G033000' => 'ppe', 'Psat0s2633g0080' => 'psa', 'Psat0s3396g0080' => 'psa', 'Psat0s3396g0200' => 'psa', 'Psat3g139080' => 'psa', 'Psat5g285080' => 'psa', 'Psat6g157760' => 'psa', 'Psat6g208440' => 'psa', 'Psat7g215320' => 'psa', 'Psat7g215400' => 'psa', 'Psat7g235600' => 'psa', 'Psat7g235760' => 'psa', 'PSO063G4603' => 'pso', 'PSO210G0182' => 'pso', 'PSO210G0196' => 'pso', 'PSO339G0394' => 'pso', 'PSO339G4127' => 'pso', 'PSO513G0064' => 'pso', 'PSO761G0079' => 'pso', 'QL01p031003' => 'qlo', 'QL01p031078' => 'qlo', 'QL06p003004' => 'qlo', 'QL07p048731' => 'qlo', 'QL09p037427' => 'qlo', 'RcHm_v2.0_Chr3g0466361' => 'rch', 'RcHm_v2.0_Chr3g0485571' => 'rch', 'RcHm_v2.0_Chr4g0416551' => 'rch', 'RcHm_v2.0_Chr5g0065831' => 'rch', 'Rhsim01G0230500' => 'rsi', 'Rhsim05G0194000' => 'rsi', 'Rhsim08G0250400' => 'rsi', 'Sabra02G0131000' => 'sbr', 'Sabra06G0066300' => 'sbr', 'Sabra08G0115500' => 'sbr', 'Sabra09G0023900' => 'sbr', 'Sabra10G0054000' => 'sbr', 'Sabra14G0081500' => 'sbr', 'Sabra16G0147100' => 'sbr', 'SalBow2G2957' => 'sbo', 'SalBow4G3320' => 'sbo', 'SalBow8G1894' => 'sbo', 'Sc07g0007950' => 'sci', 'Sc12g0001360' => 'sci', 'Sc13g0004330' => 'sci', 'Sc20g0005010' => 'sci', 'Sed0000361' => 'sed', 'Sed0001706' => 'sed', 'Sed0002422' => 'sed', 'Sed0004029' => 'sed', 'Sed0004602' => 'sed', 'Sed0004943' => 'sed', 'Sed0008646' => 'sed', 'Sed0023313' => 'sed', 'Sed0024843' => 'sed', 'SEGI_00081' => 'sgi', 'SEGI_00947' => 'sgi', 'SEGI_04046' => 'sgi', 'SEGI_06880' => 'sgi', 'SEGI_09736' => 'sgi', 'SEGI_12741' => 'sgi', 'SEGI_14530' => 'sgi', 'SEGI_20705' => 'sgi', 'SEGI_26088' => 'sgi', 'SEGI_28323' => 'sgi', 'SEGI_33343' => 'sgi', 'SGA_v2.0_scaffold126G33775' => 'sas', 'SGA_v2.0_scaffold2G01337' => 'sas', 'SGA_v2.0_scaffold38G15006' => 'sas', 'SGA_v2.0_scaffold39G15264' => 'sas', 'SGA_v2.0_scaffold453G51880' => 'sas', 'SHI12696' => 'shi', 'SMO367G1096' => 'smo', 'Solyc01g068630.3' => 'sly', 'Solyc05g011880.3' => 'sly', 'Solyc06g076300.3' => 'sly', 'Solyc09g010940.4' => 'sly', 'Solyc09g075890.3' => 'sly', 'Sopen01g030560' => 'spe', 'Sopen05g006630' => 'spe', 'Sopen06g032720' => 'spe', 'Sopen09g005660' => 'spe', 'Sopen09g030690' => 'spe', 'Sp4g14540' => 'spa', 'Sp4g20030' => 'spa', 'Sp5g01320' => 'spa', 'Sp6g21170' => 'spa', 'Sp6g21180' => 'spa', 'Sp6g21190' => 'spa', 'Sp6g40220' => 'spa', 'TAR362G0122' => 'tar', 'TAR362G1338' => 'tar', 'TAR369G0590' => 'tar', 'TAR371G0824' => 'tar', 'TAR622G1429' => 'tar', 'TAR623G0734' => 'tar', 'TAR625G0441' => 'tar', 'TAR629G0976' => 'tar', 'TAR633G1195' => 'tar', 'TAR636G2660' => 'tar', 'THA.LOC104799440' => 'tha', 'THA.LOC104800966' => 'tha', 'THA.LOC104806559' => 'tha', 'THA.LOC104810765' => 'tha', 'THA.LOC104816266' => 'tha', 'THA.LOC104817419' => 'tha', 'THA.LOC104827021' => 'tha', 'Thecc.01G327400' => 'tca', 'Thecc.04G229200' => 'tca', 'Thecc.05G037400' => 'tca', 'Thecc.09G318600' => 'tca', 'Thecc.09G318700' => 'tca', 'Thhalv10006238m.g' => 'esa', 'Thhalv10014321m.g' => 'esa', 'Thhalv10014335m.g' => 'esa', 'Thhalv10015826m.g' => 'esa', 'Thhalv10017107m.g' => 'esa', 'Thhalv10017180m.g' => 'esa', 'Thhalv10029339m.g' => 'esa', 'TPR.G1699' => 'tpr', 'TPR.G23609' => 'tpr', 'TPR.G3081' => 'tpr', 'TPR.G40397' => 'tpr', 'TPR.G5522' => 'tpr', 'TPR.G5618' => 'tpr', 'TPR.G5626' => 'tpr', 'TWI09G1632' => 'twi', 'TWI23G1230' => 'twi', 'TWI53G1064' => 'twi', 'TWI59G0751' => 'twi', 'TWI74G0947' => 'twi', 'TWI77G0337' => 'twi', 'TWI79G1254' => 'twi', 'unitig_0.g2341' => 'ugi', 'unitig_26.g10006' => 'ugi', 'unitig_26.g10008' => 'ugi', 'unitig_26.g9192' => 'ugi', 'vmacro14547' => 'vma', 'vmacro15333' => 'vma', 'vmacro18743' => 'vma', 'vmacro20166' => 'vma', 'VMungo0331G0523' => 'vmu', 'VMungo0331G1202' => 'vmu', 'VMungo0720G1228' => 'vmu', 'VMungo0720G1514' => 'vmu', 'VMungo1080G0169' => 'vmu', 'VMungo1127G1475' => 'vmu', 'VMungo1383G1208' => 'vmu', 'VMungo1383G1698' => 'vmu', 'Zm00001eb012270' => 'zma', 'Zm00001eb054100' => 'zma', 'Zm00001eb063350' => 'zma', 'Zm00001eb328560' => 'zma', 'Zm00001eb342820' => 'zma', 'Zm00001eb362210' => 'zma', 'Zm00001eb397730' => 'zma', 'Zm00001eb399750' => 'zma' ) $gf_id = 'HOM05D000959' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000959' ) $data_identifier = 'HOM05D000959' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 5, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 5, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 10, 'mbi' => (int) 3, 'mco' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 2, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 3, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 11, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399750' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000959', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '622', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p07100' => 'bna', 'A03p11720' => 'bna', 'A05p08300' => 'bna', 'A05p13380' => 'bna', 'A09p54130' => 'bna', 'A10p16690' => 'bna', 'A10p16700' => 'bna', 'A10p33390' => 'bna', 'Aa31LG10G16020' => 'aar', 'Aa31LG1G11810' => 'aar', 'Aa31LG1G11830' => 'aar', 'Aa31LG1G22510' => 'aar', 'Aa31LG5G4890' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5793' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2310' => 'aag', 'Actinidia08499' => 'ach', 'Actinidia11262' => 'ach', 'Actinidia23926' => 'ach', 'Actinidia34420' => 'ach', 'Actinidia36970' => 'ach', 'Ah.02g111220' => 'amhyb', 'Ah.15g097750' => 'amhyb', 'AL4G27500' => 'aly', 'AL6G11470' => 'aly', 'AL8G35950' => 'aly', 'AL8G35960' => 'aly', 'AL8G35970' => 'aly', 'Aqoxy1G00912' => 'aox', 'Aqoxy2G02253' => 'aox', 'Aqoxy2G02411' => 'aox', 'Aqoxy5G00485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BZ66YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K8ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM4FUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6BF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HFV7XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25JBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0YNNV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MAKK6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P70IT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP2Z6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V61LZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YWP64R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3S9AI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7PGHH' => 'arhy', 'AT2G32150' => 'ath', 'AT3G62040' => 'ath', 'AT5G02230' => 'ath', 'AT5G59480' => 'ath', 'AT5G59490' => 'ath', 'ATR0332G060' => 'atr', 'ATR0559G190' => 'atr', 'ATR0693G294' => 'atr', 'Atru.chr3.3975' => 'acertr', 'Atru.chr3.3976' => 'acertr', 'Atru.chr3.3977' => 'acertr', 'Atru.chr4.2498' => 'acertr', 'Atru.chr5.838' => 'acertr', 'Atru.chr8.1990' => 'acertr', 'Atru.chr8.1991' => 'acertr', 'Atru.chr8.1992' => 'acertr', 'AUR62001759' => 'cqu', 'AUR62009545' => 'cqu', 'AUR62010474' => 'cqu', 'AUR62025820' => 'cqu', 'AUR62030422' => 'cqu', 'AUR62033605' => 'cqu', 'AUR62038615' => 'cqu', 'AUR62041347' => 'cqu', 'BcaB01g04574' => 'bca', 'BcaB02g09263' => 'bca', 'BcaB02g10453' => 'bca', 'BcaB05g22513' => 'bca', 'BcaB08g36253' => 'bca', 'BcaB08g36254' => 'bca', 'BcaC01g06519' => 'bca', 'BcaC02g11889' => 'bca', 'BcaC03g14010' => 'bca', 'BcaC03g18439' => 'bca', 'BcaC04g19765' => 'bca', 'BcaC09g48432' => 'bca', 'BcaNung07302' => 'bca', 'BolC2t06040H' => 'bol', 'BolC2t07346H' => 'bol', 'BolC3t13817H' => 'bol', 'BolC4t22625H' => 'bol', 'BolC4t23297H' => 'bol', 'BolC8t51278H' => 'bol', 'BolC9t58050H' => 'bol', 'BolC9t58051H' => 'bol', 'BolC9t60163H' => 'bol', 'BraA02t04712Z' => 'bra', 'BraA02t05791Z' => 'bra', 'BraA03t10483Z' => 'bra', 'BraA05t19795Z' => 'bra', 'BraA05t20276Z' => 'bra', 'BraA09t40827Z' => 'bra', 'BraA10t43750Z' => 'bra', 'BraA10t43751Z' => 'bra', 'BraA10t45370Z' => 'bra', 'C02p00400' => 'bna', 'C02p12460' => 'bna', 'C03p13680' => 'bna', 'C04p10270' => 'bna', 'C04p17500' => 'bna', 'C08p37010' => 'bna', 'C09p51880' => 'bna', 'C09p51890' => 'bna', 'C09p74300' => 'bna', 'CAN.G179.26' => 'can', 'CAN.G3384.1' => 'can', 'CAN.G394.68' => 'can', 'CAN.G907.13' => 'can', 'CANSAT11G0012' => 'cansat', 'CANSAT25G1586' => 'cansat', 'CANSAT35G0735' => 'cansat', 'CANSAT54G0556' => 'cansat', 'CANSAT64G0356' => 'cansat', 'CANSAT78G2042' => 'cansat', 'CARHR125920' => 'chi', 'CARHR131910' => 'chi', 'CARHR172390' => 'chi', 'CARHR211140' => 'chi', 'CARHR285850' => 'chi', 'CARHR285860' => 'chi', 'Carub.0004s1347' => 'cru', 'Carub.0004s1960' => 'cru', 'Carub.0005s2880' => 'cru', 'Carub.0006s0107' => 'cru', 'Carub.0008s2015' => 'cru', 'Carub.0008s2016' => 'cru', 'Carub.0008s2017' => 'cru', 'Ca_01315_v3' => 'car', 'Ca_05063_v3' => 'car', 'Ca_10231_v3' => 'car', 'Ca_10913_v3' => 'car', 'Ca_19156_v3' => 'car', 'Ca_23644_v3' => 'car', 'Ca_26735_v3' => 'car', 'Cc01_g13130' => 'ccan', 'Cc02_g21690' => 'ccan', 'Cc03_g03600' => 'ccan', 'Cc06_g02510' => 'ccan', 'CDE02G1265' => 'cde', 'CDE05G0415' => 'cde', 'CDE08G1082' => 'cde', 'Cfa005780' => 'cfa', 'Cfa011522' => 'cfa', 'Cfa011523' => 'cfa', 'Cfa015627' => 'cfa', 'Cfa017359' => 'cfa', 'Ciclev10005687m.g' => 'ccl', 'Ciclev10012173m.g' => 'ccl', 'Ciclev10021621m.g' => 'ccl', 'Ciclev10028968m.g' => 'ccl', 'Ciclev10029907m.g' => 'ccl', 'CiPaw.01G164800' => 'cil', 'CiPaw.07G083700' => 'cil', 'CiPaw.07G127000' => 'cil', 'CiPaw.07G136900' => 'cil', 'CiPaw.08G081700' => 'cil', 'CiPaw.09G194600' => 'cil', 'CiPaw.10G146500' => 'cil', 'CiPaw.13G091500' => 'cil', 'CiPaw.13G091600' => 'cil', 'ClCG00G003390' => 'cla', 'ClCG01G007220' => 'cla', 'ClCG03G001370' => 'cla', 'ClCG04G008100' => 'cla', 'ClCG06G006110' => 'cla', 'ClCG06G006130' => 'cla', 'ClCG10G021210' => 'cla', 'COL.COLO4_07648' => 'col', 'COL.COLO4_07650' => 'col', 'COL.COLO4_07651' => 'col', 'COL.COLO4_14780' => 'col', 'COL.COLO4_18546' => 'col', 'COL.COLO4_18547' => 'col', 'COL.COLO4_23103' => 'col', 'COL.COLO4_30419' => 'col', 'COL.COLO4_34232' => 'col', 'Cpa.g.sc169.20' => 'cpa', 'Cpa.g.sc57.45' => 'cpa', 'Cpa.g.sc58.124' => 'cpa', 'Cpa.g.sc58.125' => 'cpa', 'Cpa.g.sc81.118' => 'cpa', 'Cpa.g.sc81.119' => 'cpa', 'Cre12.g524700' => 'cre', 'CsaV3_1G034430' => 'csa', 'CsaV3_1G034440' => 'csa', 'CsaV3_1G034450' => 'csa', 'CsaV3_3G034830' => 'csa', 'CsaV3_4G025090' => 'csa', 'CsaV3_5G018660' => 'csa', 'CsaV3_6G038160' => 'csa', 'CSS0003447' => 'camsi', 'CSS0017840' => 'camsi', 'CSS0019260' => 'camsi', 'CSS0040375' => 'camsi', 'CSS0042533' => 'camsi', 'DCAR_005960' => 'dca', 'DCAR_012104' => 'dca', 'DCAR_012105' => 'dca', 'DCAR_012293' => 'dca', 'DCAR_015632' => 'dca', 'DCAR_024602' => 'dca', 'DCAR_028752' => 'dca', 'Dinv06261' => 'din', 'Dinv13982' => 'din', 'Dinv17029' => 'din', 'Dinv18463' => 'din', 'Dinv33181' => 'din', 'Dinv35585' => 'din', 'Dinv37161' => 'din', 'Dinv42977' => 'din', 'Dinv43122' => 'din', 'Dinv44517' => 'din', 'Duzib093G0256' => 'dzi', 'Duzib106G1254' => 'dzi', 'Duzib128G1789' => 'dzi', 'Duzib133G0633' => 'dzi', 'Duzib138G0510' => 'dzi', 'Duzib150G1084' => 'dzi', 'Duzib168G0488' => 'dzi', 'Duzib168G1523' => 'dzi', 'Duzib170G0133' => 'dzi', 'ECA234G1433' => 'eca', 'ECA236G1432' => 'eca', 'ECA236G2256' => 'eca', 'ECA236G2365' => 'eca', 'ECA236G4830' => 'eca', 'ECA248G1505' => 'eca', 'EL10Ac3g06431' => 'bvu', 'EL10Ac5g12577' => 'bvu', 'EL10Ac6g13533' => 'bvu', 'EL10Ac7g16045' => 'bvu', 'Eucgr.A01281' => 'egr', 'Eucgr.B02326' => 'egr', 'Eucgr.H03532' => 'egr', 'Eucgr.K00553' => 'egr', 'Eucgr.K03116' => 'egr', 'FAN02G3963' => 'fan', 'FAN05G0438' => 'fan', 'FAN09G2434' => 'fan', 'FAN12G3984' => 'fan', 'FAN14G0798' => 'fan', 'FAN17G0652' => 'fan', 'FAN19G1988' => 'fan', 'FAN22G0632' => 'fan', 'FAN23G0387' => 'fan', 'FAN26G1323' => 'fan', 'FAN28G0666' => 'fan', 'FvH4_1g26080' => 'fve', 'FvH4_3g36780' => 'fve', 'FvH4_4g15270' => 'fve', 'FvH4_6g13490' => 'fve', 'Glyma.01G098700' => 'gma', 'Glyma.03G065900' => 'gma', 'Glyma.03G073754' => 'gma', 'Glyma.03G073758' => 'gma', 'Glyma.03G083200' => 'gma', 'Glyma.03G225500' => 'gma', 'Glyma.05G037766' => 'gma', 'Glyma.07G133500' => 'gma', 'Glyma.10G139400' => 'gma', 'Glyma.10G248900' => 'gma', 'Glyma.11G137800' => 'gma', 'Glyma.12G061300' => 'gma', 'Glyma.13G337900' => 'gma', 'Glyma.15G036600' => 'gma', 'Glyma.18G182800' => 'gma', 'Glyma.19G222500' => 'gma', 'Glyma.20G144800' => 'gma', 'Gohir.A01G222000' => 'ghi', 'Gohir.A03G044000' => 'ghi', 'Gohir.A03G044100' => 'ghi', 'Gohir.A04G083100' => 'ghi', 'Gohir.A07G127200' => 'ghi', 'Gohir.A07G132400' => 'ghi', 'Gohir.A08G000700' => 'ghi', 'Gohir.A11G327300' => 'ghi', 'Gohir.D01G211500' => 'ghi', 'Gohir.D03G123400' => 'ghi', 'Gohir.D03G123500' => 'ghi', 'Gohir.D04G121800' => 'ghi', 'Gohir.D07G131500' => 'ghi', 'Gohir.D07G136600' => 'ghi', 'Gohir.D08G011600' => 'ghi', 'Gohir.D11G346200' => 'ghi', 'Gorai.001G142800' => 'gra', 'Gorai.001G148700' => 'gra', 'Gorai.002G257300' => 'gra', 'Gorai.003G130000' => 'gra', 'Gorai.003G130100' => 'gra', 'Gorai.004G005300' => 'gra', 'Gorai.007G376500' => 'gra', 'Gorai.012G104700' => 'gra', 'GSVIVG01017946001' => 'vvi', 'GSVIVG01024928001' => 'vvi', 'GSVIVG01028227001' => 'vvi', 'GSVIVG01034151001' => 'vvi', 'HanXRQChr05g0135031' => 'han', 'HanXRQChr05g0135041' => 'han', 'HanXRQChr05g0140021' => 'han', 'HanXRQChr06g0178981' => 'han', 'HanXRQChr07g0188251' => 'han', 'HanXRQChr08g0235311' => 'han', 'HanXRQChr09g0271011' => 'han', 'HanXRQChr10g0293321' => 'han', 'HanXRQChr13g0388171' => 'han', 'Haze_00916' => 'cav', 'Haze_05063' => 'cav', 'Haze_20814' => 'cav', 'Haze_24128' => 'cav', 'Hma1.2p1_0745F.1_g212010' => 'hma', 'Hma1.2p1_0757F.1_g213260' => 'hma', 'Hma1.2p1_0936F.1_g238840' => 'hma', 'Hma1.2p1_1735F.1_g299890' => 'hma', 'Hma1.2p1_1861F.1_g305685' => 'hma', 'HPP92_003397' => 'vpl', 'HPP92_012597' => 'vpl', 'HPP92_015520' => 'vpl', 'HPP92_015539' => 'vpl', 'HPP92_020373' => 'vpl', 'Hund04938' => 'sun', 'Hund10677' => 'sun', 'Hund11033' => 'sun', 'Hund12155' => 'sun', 'Lalb_Chr01g0022551' => 'lal', 'Lalb_Chr03g0042341' => 'lal', 'Lalb_Chr07g0192931' => 'lal', 'Lalb_Chr12g0209551' => 'lal', 'Lalb_Chr19g0125251' => 'lal', 'Lalb_Chr19g0137891' => 'lal', 'Lalb_Chr21g0304641' => 'lal', 'Lalb_Chr21g0309881' => 'lal', 'Lj1A5T12' => 'lonja', 'Lj1C148G10' => 'lonja', 'Lj2A93T83' => 'lonja', 'Lj3A738G68' => 'lonja', 'Lj3C966T1' => 'lonja', 'Lj3g0018958' => 'lja', 'Lj3g0021831' => 'lja', 'Lj3g0025443' => 'lja', 'Lj4g0026809' => 'lja', 'Lj5g0012558' => 'lja', 'Lj5g0021586' => 'lja', 'Lsat_1_v5_gn_5_156840' => 'lsa', 'Lsat_1_v5_gn_8_73460' => 'lsa', 'Lsat_1_v5_gn_8_73481' => 'lsa', 'Lsat_1_v5_gn_9_31601' => 'lsa', 'Lsat_1_v5_gn_9_77320' => 'lsa', 'Manes.01G171300' => 'mes', 'Manes.01G171400' => 'mes', 'Manes.01G236100' => 'mes', 'Manes.02G130500' => 'mes', 'Manes.02G130600' => 'mes', 'Manes.03G180200' => 'mes', 'Manes.05G007000' => 'mes', 'Manes.08G084400' => 'mes', 'Manes.09G092600' => 'mes', 'Manes.15G027900' => 'mes', 'MBI04_g40948_MAGBIO' => 'mbi', 'MBI14_g12123_MAGBIO' => 'mbi', 'MBI18_g28915_MAGBIO' => 'mbi', 'MCO09G053' => 'mco', 'MCO11G782' => 'mco', 'MCO15G215' => 'mco', 'MD03G1088500' => 'mdo', 'MD03G1088600' => 'mdo', 'MD04G1130800' => 'mdo', 'MD09G1291700' => 'mdo', 'MD11G1097500' => 'mdo', 'MD11G1097600' => 'mdo', 'MD12G1143900' => 'mdo', 'MD13G1191400' => 'mdo', 'MD16G1191500' => 'mdo', 'Medtr1g085570' => 'mtr', 'Medtr1g104610' => 'mtr', 'Medtr2g097520' => 'mtr', 'Medtr4g021800' => 'mtr', 'Medtr4g021825' => 'mtr', 'Medtr4g064270' => 'mtr', 'Medtr4g064380' => 'mtr', 'Medtr7g062150' => 'mtr', 'MELO3C003138.2' => 'cme', 'MELO3C005187.2' => 'cme', 'MELO3C009252.2' => 'cme', 'MELO3C014481.2' => 'cme', 'MELO3C020616.2' => 'cme', 'MELO3C020617.2' => 'cme', 'MELO3C020618.2' => 'cme', 'Migut.G00328' => 'egut', 'Migut.J00320' => 'egut', 'Migut.L01000' => 'egut', 'Migut.L01953' => 'egut', 'MSTRG.10253' => 'ama', 'MSTRG.19077' => 'ama', 'MSTRG.26780' => 'ama', 'MSTRG.4023' => 'ama', 'MSTRG.5655' => 'ama', 'MSTRG.9992' => 'ama', 'Nitab4.5_0000043g0310' => 'nta', 'Nitab4.5_0000463g0080' => 'nta', 'Nitab4.5_0000705g0170' => 'nta', 'Nitab4.5_0001326g0060' => 'nta', 'Nitab4.5_0001628g0030' => 'nta', 'Nitab4.5_0002103g0110' => 'nta', 'Nitab4.5_0002946g0030' => 'nta', 'Nitab4.5_0004639g0030' => 'nta', 'Nn2g11149' => 'nnu', 'Nn2g13389' => 'nnu', 'Nn4g25326' => 'nnu', 'Nn4g26290' => 'nnu', 'Nn5g29865' => 'nnu', 'Oeu004163.1' => 'oeu', 'Oeu006901.1' => 'oeu', 'Oeu010096.1' => 'oeu', 'Oeu024340.1' => 'oeu', 'Oeu048369.1' => 'oeu', 'Os01g0973000' => 'osa', 'Os03g0273800' => 'osa', 'Os03g0701200' => 'osa', 'Os03g0834050' => 'osa', 'Os07g0634400' => 'osa', 'Peaxi162Scf00092g01414' => 'pax', 'Peaxi162Scf00165g00818' => 'pax', 'Peaxi162Scf00309g00516' => 'pax', 'Peaxi162Scf00774g00218' => 'pax', 'PGR004G1824' => 'pgr', 'PGR004G2606' => 'pgr', 'PGR031G2716' => 'pgr', 'PGR102G2460' => 'pgr', 'PGR142G2599' => 'pgr', 'PGSC0003DMG400000843' => 'stu', 'PGSC0003DMG400008829' => 'stu', 'PGSC0003DMG400030418' => 'stu', 'PGSC0003DMG400031834' => 'stu', 'PGSC0003DMG401028300' => 'stu', 'PGSC0003DMG402028300' => 'stu', 'Phvul.001G219300' => 'pvu', 'Phvul.007G056000' => 'pvu', 'Phvul.007G208000' => 'pvu', 'Phvul.008G119500' => 'pvu', 'Phvul.010G011200' => 'pvu', 'Phvul.010G014800' => 'pvu', 'Phvul.011G062900' => 'pvu', 'Phvul.L007043' => 'pvu', 'Potri.001G242300' => 'ptr', 'Potri.002G185300' => 'ptr', 'Potri.006G086900' => 'ptr', 'Potri.008G151700' => 'ptr', 'Potri.009G033500' => 'ptr', 'Potri.010G089300' => 'ptr', 'Potri.014G110800' => 'ptr', 'Pp3c27_8130' => 'ppa', 'Pp3c6_27410' => 'ppa', 'PRCOL_00001659' => 'pco', 'PRCOL_00001927' => 'pco', 'PRCOL_00003649' => 'pco', 'Prupe.1G011600' => 'ppe', 'Prupe.3G000800' => 'ppe', 'Prupe.3G001100' => 'ppe', 'Prupe.6G072700' => 'ppe', 'Prupe.6G072800' => 'ppe', 'Prupe.6G257300' => 'ppe', 'Prupe.8G033000' => 'ppe', 'Psat0s2633g0080' => 'psa', 'Psat0s3396g0080' => 'psa', 'Psat0s3396g0200' => 'psa', 'Psat3g139080' => 'psa', 'Psat5g285080' => 'psa', 'Psat6g157760' => 'psa', 'Psat6g208440' => 'psa', 'Psat7g215320' => 'psa', 'Psat7g215400' => 'psa', 'Psat7g235600' => 'psa', 'Psat7g235760' => 'psa', 'PSO063G4603' => 'pso', 'PSO210G0182' => 'pso', 'PSO210G0196' => 'pso', 'PSO339G0394' => 'pso', 'PSO339G4127' => 'pso', 'PSO513G0064' => 'pso', 'PSO761G0079' => 'pso', 'QL01p031003' => 'qlo', 'QL01p031078' => 'qlo', 'QL06p003004' => 'qlo', 'QL07p048731' => 'qlo', 'QL09p037427' => 'qlo', 'RcHm_v2.0_Chr3g0466361' => 'rch', 'RcHm_v2.0_Chr3g0485571' => 'rch', 'RcHm_v2.0_Chr4g0416551' => 'rch', 'RcHm_v2.0_Chr5g0065831' => 'rch', 'Rhsim01G0230500' => 'rsi', 'Rhsim05G0194000' => 'rsi', 'Rhsim08G0250400' => 'rsi', 'Sabra02G0131000' => 'sbr', 'Sabra06G0066300' => 'sbr', 'Sabra08G0115500' => 'sbr', 'Sabra09G0023900' => 'sbr', 'Sabra10G0054000' => 'sbr', 'Sabra14G0081500' => 'sbr', 'Sabra16G0147100' => 'sbr', 'SalBow2G2957' => 'sbo', 'SalBow4G3320' => 'sbo', 'SalBow8G1894' => 'sbo', 'Sc07g0007950' => 'sci', 'Sc12g0001360' => 'sci', 'Sc13g0004330' => 'sci', 'Sc20g0005010' => 'sci', 'Sed0000361' => 'sed', 'Sed0001706' => 'sed', 'Sed0002422' => 'sed', 'Sed0004029' => 'sed', 'Sed0004602' => 'sed', 'Sed0004943' => 'sed', 'Sed0008646' => 'sed', 'Sed0023313' => 'sed', 'Sed0024843' => 'sed', 'SEGI_00081' => 'sgi', 'SEGI_00947' => 'sgi', 'SEGI_04046' => 'sgi', 'SEGI_06880' => 'sgi', 'SEGI_09736' => 'sgi', 'SEGI_12741' => 'sgi', 'SEGI_14530' => 'sgi', 'SEGI_20705' => 'sgi', 'SEGI_26088' => 'sgi', 'SEGI_28323' => 'sgi', 'SEGI_33343' => 'sgi', 'SGA_v2.0_scaffold126G33775' => 'sas', 'SGA_v2.0_scaffold2G01337' => 'sas', 'SGA_v2.0_scaffold38G15006' => 'sas', 'SGA_v2.0_scaffold39G15264' => 'sas', 'SGA_v2.0_scaffold453G51880' => 'sas', 'SHI12696' => 'shi', 'SMO367G1096' => 'smo', 'Solyc01g068630.3' => 'sly', 'Solyc05g011880.3' => 'sly', 'Solyc06g076300.3' => 'sly', 'Solyc09g010940.4' => 'sly', 'Solyc09g075890.3' => 'sly', 'Sopen01g030560' => 'spe', 'Sopen05g006630' => 'spe', 'Sopen06g032720' => 'spe', 'Sopen09g005660' => 'spe', 'Sopen09g030690' => 'spe', 'Sp4g14540' => 'spa', 'Sp4g20030' => 'spa', 'Sp5g01320' => 'spa', 'Sp6g21170' => 'spa', 'Sp6g21180' => 'spa', 'Sp6g21190' => 'spa', 'Sp6g40220' => 'spa', 'TAR362G0122' => 'tar', 'TAR362G1338' => 'tar', 'TAR369G0590' => 'tar', 'TAR371G0824' => 'tar', 'TAR622G1429' => 'tar', 'TAR623G0734' => 'tar', 'TAR625G0441' => 'tar', 'TAR629G0976' => 'tar', 'TAR633G1195' => 'tar', 'TAR636G2660' => 'tar', 'THA.LOC104799440' => 'tha', 'THA.LOC104800966' => 'tha', 'THA.LOC104806559' => 'tha', 'THA.LOC104810765' => 'tha', 'THA.LOC104816266' => 'tha', 'THA.LOC104817419' => 'tha', 'THA.LOC104827021' => 'tha', 'Thecc.01G327400' => 'tca', 'Thecc.04G229200' => 'tca', 'Thecc.05G037400' => 'tca', 'Thecc.09G318600' => 'tca', 'Thecc.09G318700' => 'tca', 'Thhalv10006238m.g' => 'esa', 'Thhalv10014321m.g' => 'esa', 'Thhalv10014335m.g' => 'esa', 'Thhalv10015826m.g' => 'esa', 'Thhalv10017107m.g' => 'esa', 'Thhalv10017180m.g' => 'esa', 'Thhalv10029339m.g' => 'esa', 'TPR.G1699' => 'tpr', 'TPR.G23609' => 'tpr', 'TPR.G3081' => 'tpr', 'TPR.G40397' => 'tpr', 'TPR.G5522' => 'tpr', 'TPR.G5618' => 'tpr', 'TPR.G5626' => 'tpr', 'TWI09G1632' => 'twi', 'TWI23G1230' => 'twi', 'TWI53G1064' => 'twi', 'TWI59G0751' => 'twi', 'TWI74G0947' => 'twi', 'TWI77G0337' => 'twi', 'TWI79G1254' => 'twi', 'unitig_0.g2341' => 'ugi', 'unitig_26.g10006' => 'ugi', 'unitig_26.g10008' => 'ugi', 'unitig_26.g9192' => 'ugi', 'vmacro14547' => 'vma', 'vmacro15333' => 'vma', 'vmacro18743' => 'vma', 'vmacro20166' => 'vma', 'VMungo0331G0523' => 'vmu', 'VMungo0331G1202' => 'vmu', 'VMungo0720G1228' => 'vmu', 'VMungo0720G1514' => 'vmu', 'VMungo1080G0169' => 'vmu', 'VMungo1127G1475' => 'vmu', 'VMungo1383G1208' => 'vmu', 'VMungo1383G1698' => 'vmu', 'Zm00001eb012270' => 'zma', 'Zm00001eb054100' => 'zma', 'Zm00001eb063350' => 'zma', 'Zm00001eb328560' => 'zma', 'Zm00001eb342820' => 'zma', 'Zm00001eb362210' => 'zma', 'Zm00001eb397730' => 'zma', 'Zm00001eb399750' => 'zma' ), 'gf_id' => 'HOM05D000959', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000959' ), 'data_identifier' => 'HOM05D000959', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000959', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '622', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p07100' => 'bna', 'A03p11720' => 'bna', 'A05p08300' => 'bna', 'A05p13380' => 'bna', 'A09p54130' => 'bna', 'A10p16690' => 'bna', 'A10p16700' => 'bna', 'A10p33390' => 'bna', 'Aa31LG10G16020' => 'aar', 'Aa31LG1G11810' => 'aar', 'Aa31LG1G11830' => 'aar', 'Aa31LG1G22510' => 'aar', 'Aa31LG5G4890' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5793' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2310' => 'aag', 'Actinidia08499' => 'ach', 'Actinidia11262' => 'ach', 'Actinidia23926' => 'ach', 'Actinidia34420' => 'ach', 'Actinidia36970' => 'ach', 'Ah.02g111220' => 'amhyb', 'Ah.15g097750' => 'amhyb', 'AL4G27500' => 'aly', 'AL6G11470' => 'aly', 'AL8G35950' => 'aly', 'AL8G35960' => 'aly', 'AL8G35970' => 'aly', 'Aqoxy1G00912' => 'aox', 'Aqoxy2G02253' => 'aox', 'Aqoxy2G02411' => 'aox', 'Aqoxy5G00485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BZ66YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K8ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM4FUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6BF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HFV7XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25JBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0YNNV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MAKK6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P70IT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP2Z6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V61LZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YWP64R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3S9AI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7PGHH' => 'arhy', 'AT2G32150' => 'ath', 'AT3G62040' => 'ath', 'AT5G02230' => 'ath', 'AT5G59480' => 'ath', 'AT5G59490' => 'ath', 'ATR0332G060' => 'atr', 'ATR0559G190' => 'atr', 'ATR0693G294' => 'atr', 'Atru.chr3.3975' => 'acertr', 'Atru.chr3.3976' => 'acertr', 'Atru.chr3.3977' => 'acertr', 'Atru.chr4.2498' => 'acertr', 'Atru.chr5.838' => 'acertr', 'Atru.chr8.1990' => 'acertr', 'Atru.chr8.1991' => 'acertr', 'Atru.chr8.1992' => 'acertr', 'AUR62001759' => 'cqu', 'AUR62009545' => 'cqu', 'AUR62010474' => 'cqu', 'AUR62025820' => 'cqu', 'AUR62030422' => 'cqu', 'AUR62033605' => 'cqu', 'AUR62038615' => 'cqu', 'AUR62041347' => 'cqu', 'BcaB01g04574' => 'bca', 'BcaB02g09263' => 'bca', 'BcaB02g10453' => 'bca', 'BcaB05g22513' => 'bca', 'BcaB08g36253' => 'bca', 'BcaB08g36254' => 'bca', 'BcaC01g06519' => 'bca', 'BcaC02g11889' => 'bca', 'BcaC03g14010' => 'bca', 'BcaC03g18439' => 'bca', 'BcaC04g19765' => 'bca', 'BcaC09g48432' => 'bca', 'BcaNung07302' => 'bca', 'BolC2t06040H' => 'bol', 'BolC2t07346H' => 'bol', 'BolC3t13817H' => 'bol', 'BolC4t22625H' => 'bol', 'BolC4t23297H' => 'bol', 'BolC8t51278H' => 'bol', 'BolC9t58050H' => 'bol', 'BolC9t58051H' => 'bol', 'BolC9t60163H' => 'bol', 'BraA02t04712Z' => 'bra', 'BraA02t05791Z' => 'bra', 'BraA03t10483Z' => 'bra', 'BraA05t19795Z' => 'bra', 'BraA05t20276Z' => 'bra', 'BraA09t40827Z' => 'bra', 'BraA10t43750Z' => 'bra', 'BraA10t43751Z' => 'bra', 'BraA10t45370Z' => 'bra', 'C02p00400' => 'bna', 'C02p12460' => 'bna', 'C03p13680' => 'bna', 'C04p10270' => 'bna', 'C04p17500' => 'bna', 'C08p37010' => 'bna', 'C09p51880' => 'bna', 'C09p51890' => 'bna', 'C09p74300' => 'bna', 'CAN.G179.26' => 'can', 'CAN.G3384.1' => 'can', 'CAN.G394.68' => 'can', 'CAN.G907.13' => 'can', 'CANSAT11G0012' => 'cansat', 'CANSAT25G1586' => 'cansat', 'CANSAT35G0735' => 'cansat', 'CANSAT54G0556' => 'cansat', 'CANSAT64G0356' => 'cansat', 'CANSAT78G2042' => 'cansat', 'CARHR125920' => 'chi', 'CARHR131910' => 'chi', 'CARHR172390' => 'chi', 'CARHR211140' => 'chi', 'CARHR285850' => 'chi', 'CARHR285860' => 'chi', 'Carub.0004s1347' => 'cru', 'Carub.0004s1960' => 'cru', 'Carub.0005s2880' => 'cru', 'Carub.0006s0107' => 'cru', 'Carub.0008s2015' => 'cru', 'Carub.0008s2016' => 'cru', 'Carub.0008s2017' => 'cru', 'Ca_01315_v3' => 'car', 'Ca_05063_v3' => 'car', 'Ca_10231_v3' => 'car', 'Ca_10913_v3' => 'car', 'Ca_19156_v3' => 'car', 'Ca_23644_v3' => 'car', 'Ca_26735_v3' => 'car', 'Cc01_g13130' => 'ccan', 'Cc02_g21690' => 'ccan', 'Cc03_g03600' => 'ccan', 'Cc06_g02510' => 'ccan', 'CDE02G1265' => 'cde', 'CDE05G0415' => 'cde', 'CDE08G1082' => 'cde', 'Cfa005780' => 'cfa', 'Cfa011522' => 'cfa', 'Cfa011523' => 'cfa', 'Cfa015627' => 'cfa', 'Cfa017359' => 'cfa', 'Ciclev10005687m.g' => 'ccl', 'Ciclev10012173m.g' => 'ccl', 'Ciclev10021621m.g' => 'ccl', 'Ciclev10028968m.g' => 'ccl', 'Ciclev10029907m.g' => 'ccl', 'CiPaw.01G164800' => 'cil', 'CiPaw.07G083700' => 'cil', 'CiPaw.07G127000' => 'cil', 'CiPaw.07G136900' => 'cil', 'CiPaw.08G081700' => 'cil', 'CiPaw.09G194600' => 'cil', 'CiPaw.10G146500' => 'cil', 'CiPaw.13G091500' => 'cil', 'CiPaw.13G091600' => 'cil', 'ClCG00G003390' => 'cla', 'ClCG01G007220' => 'cla', 'ClCG03G001370' => 'cla', 'ClCG04G008100' => 'cla', 'ClCG06G006110' => 'cla', 'ClCG06G006130' => 'cla', 'ClCG10G021210' => 'cla', 'COL.COLO4_07648' => 'col', 'COL.COLO4_07650' => 'col', 'COL.COLO4_07651' => 'col', 'COL.COLO4_14780' => 'col', 'COL.COLO4_18546' => 'col', 'COL.COLO4_18547' => 'col', 'COL.COLO4_23103' => 'col', 'COL.COLO4_30419' => 'col', 'COL.COLO4_34232' => 'col', 'Cpa.g.sc169.20' => 'cpa', 'Cpa.g.sc57.45' => 'cpa', 'Cpa.g.sc58.124' => 'cpa', 'Cpa.g.sc58.125' => 'cpa', 'Cpa.g.sc81.118' => 'cpa', 'Cpa.g.sc81.119' => 'cpa', 'Cre12.g524700' => 'cre', 'CsaV3_1G034430' => 'csa', 'CsaV3_1G034440' => 'csa', 'CsaV3_1G034450' => 'csa', 'CsaV3_3G034830' => 'csa', 'CsaV3_4G025090' => 'csa', 'CsaV3_5G018660' => 'csa', 'CsaV3_6G038160' => 'csa', 'CSS0003447' => 'camsi', 'CSS0017840' => 'camsi', 'CSS0019260' => 'camsi', 'CSS0040375' => 'camsi', 'CSS0042533' => 'camsi', 'DCAR_005960' => 'dca', 'DCAR_012104' => 'dca', 'DCAR_012105' => 'dca', 'DCAR_012293' => 'dca', 'DCAR_015632' => 'dca', 'DCAR_024602' => 'dca', 'DCAR_028752' => 'dca', 'Dinv06261' => 'din', 'Dinv13982' => 'din', 'Dinv17029' => 'din', 'Dinv18463' => 'din', 'Dinv33181' => 'din', 'Dinv35585' => 'din', 'Dinv37161' => 'din', 'Dinv42977' => 'din', 'Dinv43122' => 'din', 'Dinv44517' => 'din', 'Duzib093G0256' => 'dzi', 'Duzib106G1254' => 'dzi', 'Duzib128G1789' => 'dzi', 'Duzib133G0633' => 'dzi', 'Duzib138G0510' => 'dzi', 'Duzib150G1084' => 'dzi', 'Duzib168G0488' => 'dzi', 'Duzib168G1523' => 'dzi', 'Duzib170G0133' => 'dzi', 'ECA234G1433' => 'eca', 'ECA236G1432' => 'eca', 'ECA236G2256' => 'eca', 'ECA236G2365' => 'eca', 'ECA236G4830' => 'eca', 'ECA248G1505' => 'eca', 'EL10Ac3g06431' => 'bvu', 'EL10Ac5g12577' => 'bvu', 'EL10Ac6g13533' => 'bvu', 'EL10Ac7g16045' => 'bvu', 'Eucgr.A01281' => 'egr', 'Eucgr.B02326' => 'egr', 'Eucgr.H03532' => 'egr', 'Eucgr.K00553' => 'egr', 'Eucgr.K03116' => 'egr', 'FAN02G3963' => 'fan', 'FAN05G0438' => 'fan', 'FAN09G2434' => 'fan', 'FAN12G3984' => 'fan', 'FAN14G0798' => 'fan', 'FAN17G0652' => 'fan', 'FAN19G1988' => 'fan', 'FAN22G0632' => 'fan', 'FAN23G0387' => 'fan', 'FAN26G1323' => 'fan', 'FAN28G0666' => 'fan', 'FvH4_1g26080' => 'fve', 'FvH4_3g36780' => 'fve', 'FvH4_4g15270' => 'fve', 'FvH4_6g13490' => 'fve', 'Glyma.01G098700' => 'gma', 'Glyma.03G065900' => 'gma', 'Glyma.03G073754' => 'gma', 'Glyma.03G073758' => 'gma', 'Glyma.03G083200' => 'gma', 'Glyma.03G225500' => 'gma', 'Glyma.05G037766' => 'gma', 'Glyma.07G133500' => 'gma', 'Glyma.10G139400' => 'gma', 'Glyma.10G248900' => 'gma', 'Glyma.11G137800' => 'gma', 'Glyma.12G061300' => 'gma', 'Glyma.13G337900' => 'gma', 'Glyma.15G036600' => 'gma', 'Glyma.18G182800' => 'gma', 'Glyma.19G222500' => 'gma', 'Glyma.20G144800' => 'gma', 'Gohir.A01G222000' => 'ghi', 'Gohir.A03G044000' => 'ghi', 'Gohir.A03G044100' => 'ghi', 'Gohir.A04G083100' => 'ghi', 'Gohir.A07G127200' => 'ghi', 'Gohir.A07G132400' => 'ghi', 'Gohir.A08G000700' => 'ghi', 'Gohir.A11G327300' => 'ghi', 'Gohir.D01G211500' => 'ghi', 'Gohir.D03G123400' => 'ghi', 'Gohir.D03G123500' => 'ghi', 'Gohir.D04G121800' => 'ghi', 'Gohir.D07G131500' => 'ghi', 'Gohir.D07G136600' => 'ghi', 'Gohir.D08G011600' => 'ghi', 'Gohir.D11G346200' => 'ghi', 'Gorai.001G142800' => 'gra', 'Gorai.001G148700' => 'gra', 'Gorai.002G257300' => 'gra', 'Gorai.003G130000' => 'gra', 'Gorai.003G130100' => 'gra', 'Gorai.004G005300' => 'gra', 'Gorai.007G376500' => 'gra', 'Gorai.012G104700' => 'gra', 'GSVIVG01017946001' => 'vvi', 'GSVIVG01024928001' => 'vvi', 'GSVIVG01028227001' => 'vvi', 'GSVIVG01034151001' => 'vvi', 'HanXRQChr05g0135031' => 'han', 'HanXRQChr05g0135041' => 'han', 'HanXRQChr05g0140021' => 'han', 'HanXRQChr06g0178981' => 'han', 'HanXRQChr07g0188251' => 'han', 'HanXRQChr08g0235311' => 'han', 'HanXRQChr09g0271011' => 'han', 'HanXRQChr10g0293321' => 'han', 'HanXRQChr13g0388171' => 'han', 'Haze_00916' => 'cav', 'Haze_05063' => 'cav', 'Haze_20814' => 'cav', 'Haze_24128' => 'cav', 'Hma1.2p1_0745F.1_g212010' => 'hma', 'Hma1.2p1_0757F.1_g213260' => 'hma', 'Hma1.2p1_0936F.1_g238840' => 'hma', 'Hma1.2p1_1735F.1_g299890' => 'hma', 'Hma1.2p1_1861F.1_g305685' => 'hma', 'HPP92_003397' => 'vpl', 'HPP92_012597' => 'vpl', 'HPP92_015520' => 'vpl', 'HPP92_015539' => 'vpl', 'HPP92_020373' => 'vpl', 'Hund04938' => 'sun', 'Hund10677' => 'sun', 'Hund11033' => 'sun', 'Hund12155' => 'sun', 'Lalb_Chr01g0022551' => 'lal', 'Lalb_Chr03g0042341' => 'lal', 'Lalb_Chr07g0192931' => 'lal', 'Lalb_Chr12g0209551' => 'lal', 'Lalb_Chr19g0125251' => 'lal', 'Lalb_Chr19g0137891' => 'lal', 'Lalb_Chr21g0304641' => 'lal', 'Lalb_Chr21g0309881' => 'lal', 'Lj1A5T12' => 'lonja', 'Lj1C148G10' => 'lonja', 'Lj2A93T83' => 'lonja', 'Lj3A738G68' => 'lonja', 'Lj3C966T1' => 'lonja', 'Lj3g0018958' => 'lja', 'Lj3g0021831' => 'lja', 'Lj3g0025443' => 'lja', 'Lj4g0026809' => 'lja', 'Lj5g0012558' => 'lja', 'Lj5g0021586' => 'lja', 'Lsat_1_v5_gn_5_156840' => 'lsa', 'Lsat_1_v5_gn_8_73460' => 'lsa', 'Lsat_1_v5_gn_8_73481' => 'lsa', 'Lsat_1_v5_gn_9_31601' => 'lsa', 'Lsat_1_v5_gn_9_77320' => 'lsa', 'Manes.01G171300' => 'mes', 'Manes.01G171400' => 'mes', 'Manes.01G236100' => 'mes', 'Manes.02G130500' => 'mes', 'Manes.02G130600' => 'mes', 'Manes.03G180200' => 'mes', 'Manes.05G007000' => 'mes', 'Manes.08G084400' => 'mes', 'Manes.09G092600' => 'mes', 'Manes.15G027900' => 'mes', 'MBI04_g40948_MAGBIO' => 'mbi', 'MBI14_g12123_MAGBIO' => 'mbi', 'MBI18_g28915_MAGBIO' => 'mbi', 'MCO09G053' => 'mco', 'MCO11G782' => 'mco', 'MCO15G215' => 'mco', 'MD03G1088500' => 'mdo', 'MD03G1088600' => 'mdo', 'MD04G1130800' => 'mdo', 'MD09G1291700' => 'mdo', 'MD11G1097500' => 'mdo', 'MD11G1097600' => 'mdo', 'MD12G1143900' => 'mdo', 'MD13G1191400' => 'mdo', 'MD16G1191500' => 'mdo', 'Medtr1g085570' => 'mtr', 'Medtr1g104610' => 'mtr', 'Medtr2g097520' => 'mtr', 'Medtr4g021800' => 'mtr', 'Medtr4g021825' => 'mtr', 'Medtr4g064270' => 'mtr', 'Medtr4g064380' => 'mtr', 'Medtr7g062150' => 'mtr', 'MELO3C003138.2' => 'cme', 'MELO3C005187.2' => 'cme', 'MELO3C009252.2' => 'cme', 'MELO3C014481.2' => 'cme', 'MELO3C020616.2' => 'cme', 'MELO3C020617.2' => 'cme', 'MELO3C020618.2' => 'cme', 'Migut.G00328' => 'egut', 'Migut.J00320' => 'egut', 'Migut.L01000' => 'egut', 'Migut.L01953' => 'egut', 'MSTRG.10253' => 'ama', 'MSTRG.19077' => 'ama', 'MSTRG.26780' => 'ama', 'MSTRG.4023' => 'ama', 'MSTRG.5655' => 'ama', 'MSTRG.9992' => 'ama', 'Nitab4.5_0000043g0310' => 'nta', 'Nitab4.5_0000463g0080' => 'nta', 'Nitab4.5_0000705g0170' => 'nta', 'Nitab4.5_0001326g0060' => 'nta', 'Nitab4.5_0001628g0030' => 'nta', 'Nitab4.5_0002103g0110' => 'nta', 'Nitab4.5_0002946g0030' => 'nta', 'Nitab4.5_0004639g0030' => 'nta', 'Nn2g11149' => 'nnu', 'Nn2g13389' => 'nnu', 'Nn4g25326' => 'nnu', 'Nn4g26290' => 'nnu', 'Nn5g29865' => 'nnu', 'Oeu004163.1' => 'oeu', 'Oeu006901.1' => 'oeu', 'Oeu010096.1' => 'oeu', 'Oeu024340.1' => 'oeu', 'Oeu048369.1' => 'oeu', 'Os01g0973000' => 'osa', 'Os03g0273800' => 'osa', 'Os03g0701200' => 'osa', 'Os03g0834050' => 'osa', 'Os07g0634400' => 'osa', 'Peaxi162Scf00092g01414' => 'pax', 'Peaxi162Scf00165g00818' => 'pax', 'Peaxi162Scf00309g00516' => 'pax', 'Peaxi162Scf00774g00218' => 'pax', 'PGR004G1824' => 'pgr', 'PGR004G2606' => 'pgr', 'PGR031G2716' => 'pgr', 'PGR102G2460' => 'pgr', 'PGR142G2599' => 'pgr', 'PGSC0003DMG400000843' => 'stu', 'PGSC0003DMG400008829' => 'stu', 'PGSC0003DMG400030418' => 'stu', 'PGSC0003DMG400031834' => 'stu', 'PGSC0003DMG401028300' => 'stu', 'PGSC0003DMG402028300' => 'stu', 'Phvul.001G219300' => 'pvu', 'Phvul.007G056000' => 'pvu', 'Phvul.007G208000' => 'pvu', 'Phvul.008G119500' => 'pvu', 'Phvul.010G011200' => 'pvu', 'Phvul.010G014800' => 'pvu', 'Phvul.011G062900' => 'pvu', 'Phvul.L007043' => 'pvu', 'Potri.001G242300' => 'ptr', 'Potri.002G185300' => 'ptr', 'Potri.006G086900' => 'ptr', 'Potri.008G151700' => 'ptr', 'Potri.009G033500' => 'ptr', 'Potri.010G089300' => 'ptr', 'Potri.014G110800' => 'ptr', 'Pp3c27_8130' => 'ppa', 'Pp3c6_27410' => 'ppa', 'PRCOL_00001659' => 'pco', 'PRCOL_00001927' => 'pco', 'PRCOL_00003649' => 'pco', 'Prupe.1G011600' => 'ppe', 'Prupe.3G000800' => 'ppe', 'Prupe.3G001100' => 'ppe', 'Prupe.6G072700' => 'ppe', 'Prupe.6G072800' => 'ppe', 'Prupe.6G257300' => 'ppe', 'Prupe.8G033000' => 'ppe', 'Psat0s2633g0080' => 'psa', 'Psat0s3396g0080' => 'psa', 'Psat0s3396g0200' => 'psa', 'Psat3g139080' => 'psa', 'Psat5g285080' => 'psa', 'Psat6g157760' => 'psa', 'Psat6g208440' => 'psa', 'Psat7g215320' => 'psa', 'Psat7g215400' => 'psa', 'Psat7g235600' => 'psa', 'Psat7g235760' => 'psa', 'PSO063G4603' => 'pso', 'PSO210G0182' => 'pso', 'PSO210G0196' => 'pso', 'PSO339G0394' => 'pso', 'PSO339G4127' => 'pso', 'PSO513G0064' => 'pso', 'PSO761G0079' => 'pso', 'QL01p031003' => 'qlo', 'QL01p031078' => 'qlo', 'QL06p003004' => 'qlo', 'QL07p048731' => 'qlo', 'QL09p037427' => 'qlo', 'RcHm_v2.0_Chr3g0466361' => 'rch', 'RcHm_v2.0_Chr3g0485571' => 'rch', 'RcHm_v2.0_Chr4g0416551' => 'rch', 'RcHm_v2.0_Chr5g0065831' => 'rch', 'Rhsim01G0230500' => 'rsi', 'Rhsim05G0194000' => 'rsi', 'Rhsim08G0250400' => 'rsi', 'Sabra02G0131000' => 'sbr', 'Sabra06G0066300' => 'sbr', 'Sabra08G0115500' => 'sbr', 'Sabra09G0023900' => 'sbr', 'Sabra10G0054000' => 'sbr', 'Sabra14G0081500' => 'sbr', 'Sabra16G0147100' => 'sbr', 'SalBow2G2957' => 'sbo', 'SalBow4G3320' => 'sbo', 'SalBow8G1894' => 'sbo', 'Sc07g0007950' => 'sci', 'Sc12g0001360' => 'sci', 'Sc13g0004330' => 'sci', 'Sc20g0005010' => 'sci', 'Sed0000361' => 'sed', 'Sed0001706' => 'sed', 'Sed0002422' => 'sed', 'Sed0004029' => 'sed', 'Sed0004602' => 'sed', 'Sed0004943' => 'sed', 'Sed0008646' => 'sed', 'Sed0023313' => 'sed', 'Sed0024843' => 'sed', 'SEGI_00081' => 'sgi', 'SEGI_00947' => 'sgi', 'SEGI_04046' => 'sgi', 'SEGI_06880' => 'sgi', 'SEGI_09736' => 'sgi', 'SEGI_12741' => 'sgi', 'SEGI_14530' => 'sgi', 'SEGI_20705' => 'sgi', 'SEGI_26088' => 'sgi', 'SEGI_28323' => 'sgi', 'SEGI_33343' => 'sgi', 'SGA_v2.0_scaffold126G33775' => 'sas', 'SGA_v2.0_scaffold2G01337' => 'sas', 'SGA_v2.0_scaffold38G15006' => 'sas', 'SGA_v2.0_scaffold39G15264' => 'sas', 'SGA_v2.0_scaffold453G51880' => 'sas', 'SHI12696' => 'shi', 'SMO367G1096' => 'smo', 'Solyc01g068630.3' => 'sly', 'Solyc05g011880.3' => 'sly', 'Solyc06g076300.3' => 'sly', 'Solyc09g010940.4' => 'sly', 'Solyc09g075890.3' => 'sly', 'Sopen01g030560' => 'spe', 'Sopen05g006630' => 'spe', 'Sopen06g032720' => 'spe', 'Sopen09g005660' => 'spe', 'Sopen09g030690' => 'spe', 'Sp4g14540' => 'spa', 'Sp4g20030' => 'spa', 'Sp5g01320' => 'spa', 'Sp6g21170' => 'spa', 'Sp6g21180' => 'spa', 'Sp6g21190' => 'spa', 'Sp6g40220' => 'spa', 'TAR362G0122' => 'tar', 'TAR362G1338' => 'tar', 'TAR369G0590' => 'tar', 'TAR371G0824' => 'tar', 'TAR622G1429' => 'tar', 'TAR623G0734' => 'tar', 'TAR625G0441' => 'tar', 'TAR629G0976' => 'tar', 'TAR633G1195' => 'tar', 'TAR636G2660' => 'tar', 'THA.LOC104799440' => 'tha', 'THA.LOC104800966' => 'tha', 'THA.LOC104806559' => 'tha', 'THA.LOC104810765' => 'tha', 'THA.LOC104816266' => 'tha', 'THA.LOC104817419' => 'tha', 'THA.LOC104827021' => 'tha', 'Thecc.01G327400' => 'tca', 'Thecc.04G229200' => 'tca', 'Thecc.05G037400' => 'tca', 'Thecc.09G318600' => 'tca', 'Thecc.09G318700' => 'tca', 'Thhalv10006238m.g' => 'esa', 'Thhalv10014321m.g' => 'esa', 'Thhalv10014335m.g' => 'esa', 'Thhalv10015826m.g' => 'esa', 'Thhalv10017107m.g' => 'esa', 'Thhalv10017180m.g' => 'esa', 'Thhalv10029339m.g' => 'esa', 'TPR.G1699' => 'tpr', 'TPR.G23609' => 'tpr', 'TPR.G3081' => 'tpr', 'TPR.G40397' => 'tpr', 'TPR.G5522' => 'tpr', 'TPR.G5618' => 'tpr', 'TPR.G5626' => 'tpr', 'TWI09G1632' => 'twi', 'TWI23G1230' => 'twi', 'TWI53G1064' => 'twi', 'TWI59G0751' => 'twi', 'TWI74G0947' => 'twi', 'TWI77G0337' => 'twi', 'TWI79G1254' => 'twi', 'unitig_0.g2341' => 'ugi', 'unitig_26.g10006' => 'ugi', 'unitig_26.g10008' => 'ugi', 'unitig_26.g9192' => 'ugi', 'vmacro14547' => 'vma', 'vmacro15333' => 'vma', 'vmacro18743' => 'vma', 'vmacro20166' => 'vma', 'VMungo0331G0523' => 'vmu', 'VMungo0331G1202' => 'vmu', 'VMungo0720G1228' => 'vmu', 'VMungo0720G1514' => 'vmu', 'VMungo1080G0169' => 'vmu', 'VMungo1127G1475' => 'vmu', 'VMungo1383G1208' => 'vmu', 'VMungo1383G1698' => 'vmu', 'Zm00001eb012270' => 'zma', 'Zm00001eb054100' => 'zma', 'Zm00001eb063350' => 'zma', 'Zm00001eb328560' => 'zma', 'Zm00001eb342820' => 'zma', 'Zm00001eb362210' => 'zma', 'Zm00001eb397730' => 'zma', 'Zm00001eb399750' => 'zma' ) $gf_id = 'HOM05D000959' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000959' ) $data_identifier = 'HOM05D000959' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 5, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 5, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 10, 'mbi' => (int) 3, 'mco' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 2, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 3, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 11, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399750' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000959', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '622', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p07100' => 'bna', 'A03p11720' => 'bna', 'A05p08300' => 'bna', 'A05p13380' => 'bna', 'A09p54130' => 'bna', 'A10p16690' => 'bna', 'A10p16700' => 'bna', 'A10p33390' => 'bna', 'Aa31LG10G16020' => 'aar', 'Aa31LG1G11810' => 'aar', 'Aa31LG1G11830' => 'aar', 'Aa31LG1G22510' => 'aar', 'Aa31LG5G4890' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5793' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2310' => 'aag', 'Actinidia08499' => 'ach', 'Actinidia11262' => 'ach', 'Actinidia23926' => 'ach', 'Actinidia34420' => 'ach', 'Actinidia36970' => 'ach', 'Ah.02g111220' => 'amhyb', 'Ah.15g097750' => 'amhyb', 'AL4G27500' => 'aly', 'AL6G11470' => 'aly', 'AL8G35950' => 'aly', 'AL8G35960' => 'aly', 'AL8G35970' => 'aly', 'Aqoxy1G00912' => 'aox', 'Aqoxy2G02253' => 'aox', 'Aqoxy2G02411' => 'aox', 'Aqoxy5G00485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BZ66YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K8ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM4FUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6BF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HFV7XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25JBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0YNNV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MAKK6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P70IT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP2Z6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V61LZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YWP64R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3S9AI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7PGHH' => 'arhy', 'AT2G32150' => 'ath', 'AT3G62040' => 'ath', 'AT5G02230' => 'ath', 'AT5G59480' => 'ath', 'AT5G59490' => 'ath', 'ATR0332G060' => 'atr', 'ATR0559G190' => 'atr', 'ATR0693G294' => 'atr', 'Atru.chr3.3975' => 'acertr', 'Atru.chr3.3976' => 'acertr', 'Atru.chr3.3977' => 'acertr', 'Atru.chr4.2498' => 'acertr', 'Atru.chr5.838' => 'acertr', 'Atru.chr8.1990' => 'acertr', 'Atru.chr8.1991' => 'acertr', 'Atru.chr8.1992' => 'acertr', 'AUR62001759' => 'cqu', 'AUR62009545' => 'cqu', 'AUR62010474' => 'cqu', 'AUR62025820' => 'cqu', 'AUR62030422' => 'cqu', 'AUR62033605' => 'cqu', 'AUR62038615' => 'cqu', 'AUR62041347' => 'cqu', 'BcaB01g04574' => 'bca', 'BcaB02g09263' => 'bca', 'BcaB02g10453' => 'bca', 'BcaB05g22513' => 'bca', 'BcaB08g36253' => 'bca', 'BcaB08g36254' => 'bca', 'BcaC01g06519' => 'bca', 'BcaC02g11889' => 'bca', 'BcaC03g14010' => 'bca', 'BcaC03g18439' => 'bca', 'BcaC04g19765' => 'bca', 'BcaC09g48432' => 'bca', 'BcaNung07302' => 'bca', 'BolC2t06040H' => 'bol', 'BolC2t07346H' => 'bol', 'BolC3t13817H' => 'bol', 'BolC4t22625H' => 'bol', 'BolC4t23297H' => 'bol', 'BolC8t51278H' => 'bol', 'BolC9t58050H' => 'bol', 'BolC9t58051H' => 'bol', 'BolC9t60163H' => 'bol', 'BraA02t04712Z' => 'bra', 'BraA02t05791Z' => 'bra', 'BraA03t10483Z' => 'bra', 'BraA05t19795Z' => 'bra', 'BraA05t20276Z' => 'bra', 'BraA09t40827Z' => 'bra', 'BraA10t43750Z' => 'bra', 'BraA10t43751Z' => 'bra', 'BraA10t45370Z' => 'bra', 'C02p00400' => 'bna', 'C02p12460' => 'bna', 'C03p13680' => 'bna', 'C04p10270' => 'bna', 'C04p17500' => 'bna', 'C08p37010' => 'bna', 'C09p51880' => 'bna', 'C09p51890' => 'bna', 'C09p74300' => 'bna', 'CAN.G179.26' => 'can', 'CAN.G3384.1' => 'can', 'CAN.G394.68' => 'can', 'CAN.G907.13' => 'can', 'CANSAT11G0012' => 'cansat', 'CANSAT25G1586' => 'cansat', 'CANSAT35G0735' => 'cansat', 'CANSAT54G0556' => 'cansat', 'CANSAT64G0356' => 'cansat', 'CANSAT78G2042' => 'cansat', 'CARHR125920' => 'chi', 'CARHR131910' => 'chi', 'CARHR172390' => 'chi', 'CARHR211140' => 'chi', 'CARHR285850' => 'chi', 'CARHR285860' => 'chi', 'Carub.0004s1347' => 'cru', 'Carub.0004s1960' => 'cru', 'Carub.0005s2880' => 'cru', 'Carub.0006s0107' => 'cru', 'Carub.0008s2015' => 'cru', 'Carub.0008s2016' => 'cru', 'Carub.0008s2017' => 'cru', 'Ca_01315_v3' => 'car', 'Ca_05063_v3' => 'car', 'Ca_10231_v3' => 'car', 'Ca_10913_v3' => 'car', 'Ca_19156_v3' => 'car', 'Ca_23644_v3' => 'car', 'Ca_26735_v3' => 'car', 'Cc01_g13130' => 'ccan', 'Cc02_g21690' => 'ccan', 'Cc03_g03600' => 'ccan', 'Cc06_g02510' => 'ccan', 'CDE02G1265' => 'cde', 'CDE05G0415' => 'cde', 'CDE08G1082' => 'cde', 'Cfa005780' => 'cfa', 'Cfa011522' => 'cfa', 'Cfa011523' => 'cfa', 'Cfa015627' => 'cfa', 'Cfa017359' => 'cfa', 'Ciclev10005687m.g' => 'ccl', 'Ciclev10012173m.g' => 'ccl', 'Ciclev10021621m.g' => 'ccl', 'Ciclev10028968m.g' => 'ccl', 'Ciclev10029907m.g' => 'ccl', 'CiPaw.01G164800' => 'cil', 'CiPaw.07G083700' => 'cil', 'CiPaw.07G127000' => 'cil', 'CiPaw.07G136900' => 'cil', 'CiPaw.08G081700' => 'cil', 'CiPaw.09G194600' => 'cil', 'CiPaw.10G146500' => 'cil', 'CiPaw.13G091500' => 'cil', 'CiPaw.13G091600' => 'cil', 'ClCG00G003390' => 'cla', 'ClCG01G007220' => 'cla', 'ClCG03G001370' => 'cla', 'ClCG04G008100' => 'cla', 'ClCG06G006110' => 'cla', 'ClCG06G006130' => 'cla', 'ClCG10G021210' => 'cla', 'COL.COLO4_07648' => 'col', 'COL.COLO4_07650' => 'col', 'COL.COLO4_07651' => 'col', 'COL.COLO4_14780' => 'col', 'COL.COLO4_18546' => 'col', 'COL.COLO4_18547' => 'col', 'COL.COLO4_23103' => 'col', 'COL.COLO4_30419' => 'col', 'COL.COLO4_34232' => 'col', 'Cpa.g.sc169.20' => 'cpa', 'Cpa.g.sc57.45' => 'cpa', 'Cpa.g.sc58.124' => 'cpa', 'Cpa.g.sc58.125' => 'cpa', 'Cpa.g.sc81.118' => 'cpa', 'Cpa.g.sc81.119' => 'cpa', 'Cre12.g524700' => 'cre', 'CsaV3_1G034430' => 'csa', 'CsaV3_1G034440' => 'csa', 'CsaV3_1G034450' => 'csa', 'CsaV3_3G034830' => 'csa', 'CsaV3_4G025090' => 'csa', 'CsaV3_5G018660' => 'csa', 'CsaV3_6G038160' => 'csa', 'CSS0003447' => 'camsi', 'CSS0017840' => 'camsi', 'CSS0019260' => 'camsi', 'CSS0040375' => 'camsi', 'CSS0042533' => 'camsi', 'DCAR_005960' => 'dca', 'DCAR_012104' => 'dca', 'DCAR_012105' => 'dca', 'DCAR_012293' => 'dca', 'DCAR_015632' => 'dca', 'DCAR_024602' => 'dca', 'DCAR_028752' => 'dca', 'Dinv06261' => 'din', 'Dinv13982' => 'din', 'Dinv17029' => 'din', 'Dinv18463' => 'din', 'Dinv33181' => 'din', 'Dinv35585' => 'din', 'Dinv37161' => 'din', 'Dinv42977' => 'din', 'Dinv43122' => 'din', 'Dinv44517' => 'din', 'Duzib093G0256' => 'dzi', 'Duzib106G1254' => 'dzi', 'Duzib128G1789' => 'dzi', 'Duzib133G0633' => 'dzi', 'Duzib138G0510' => 'dzi', 'Duzib150G1084' => 'dzi', 'Duzib168G0488' => 'dzi', 'Duzib168G1523' => 'dzi', 'Duzib170G0133' => 'dzi', 'ECA234G1433' => 'eca', 'ECA236G1432' => 'eca', 'ECA236G2256' => 'eca', 'ECA236G2365' => 'eca', 'ECA236G4830' => 'eca', 'ECA248G1505' => 'eca', 'EL10Ac3g06431' => 'bvu', 'EL10Ac5g12577' => 'bvu', 'EL10Ac6g13533' => 'bvu', 'EL10Ac7g16045' => 'bvu', 'Eucgr.A01281' => 'egr', 'Eucgr.B02326' => 'egr', 'Eucgr.H03532' => 'egr', 'Eucgr.K00553' => 'egr', 'Eucgr.K03116' => 'egr', 'FAN02G3963' => 'fan', 'FAN05G0438' => 'fan', 'FAN09G2434' => 'fan', 'FAN12G3984' => 'fan', 'FAN14G0798' => 'fan', 'FAN17G0652' => 'fan', 'FAN19G1988' => 'fan', 'FAN22G0632' => 'fan', 'FAN23G0387' => 'fan', 'FAN26G1323' => 'fan', 'FAN28G0666' => 'fan', 'FvH4_1g26080' => 'fve', 'FvH4_3g36780' => 'fve', 'FvH4_4g15270' => 'fve', 'FvH4_6g13490' => 'fve', 'Glyma.01G098700' => 'gma', 'Glyma.03G065900' => 'gma', 'Glyma.03G073754' => 'gma', 'Glyma.03G073758' => 'gma', 'Glyma.03G083200' => 'gma', 'Glyma.03G225500' => 'gma', 'Glyma.05G037766' => 'gma', 'Glyma.07G133500' => 'gma', 'Glyma.10G139400' => 'gma', 'Glyma.10G248900' => 'gma', 'Glyma.11G137800' => 'gma', 'Glyma.12G061300' => 'gma', 'Glyma.13G337900' => 'gma', 'Glyma.15G036600' => 'gma', 'Glyma.18G182800' => 'gma', 'Glyma.19G222500' => 'gma', 'Glyma.20G144800' => 'gma', 'Gohir.A01G222000' => 'ghi', 'Gohir.A03G044000' => 'ghi', 'Gohir.A03G044100' => 'ghi', 'Gohir.A04G083100' => 'ghi', 'Gohir.A07G127200' => 'ghi', 'Gohir.A07G132400' => 'ghi', 'Gohir.A08G000700' => 'ghi', 'Gohir.A11G327300' => 'ghi', 'Gohir.D01G211500' => 'ghi', 'Gohir.D03G123400' => 'ghi', 'Gohir.D03G123500' => 'ghi', 'Gohir.D04G121800' => 'ghi', 'Gohir.D07G131500' => 'ghi', 'Gohir.D07G136600' => 'ghi', 'Gohir.D08G011600' => 'ghi', 'Gohir.D11G346200' => 'ghi', 'Gorai.001G142800' => 'gra', 'Gorai.001G148700' => 'gra', 'Gorai.002G257300' => 'gra', 'Gorai.003G130000' => 'gra', 'Gorai.003G130100' => 'gra', 'Gorai.004G005300' => 'gra', 'Gorai.007G376500' => 'gra', 'Gorai.012G104700' => 'gra', 'GSVIVG01017946001' => 'vvi', 'GSVIVG01024928001' => 'vvi', 'GSVIVG01028227001' => 'vvi', 'GSVIVG01034151001' => 'vvi', 'HanXRQChr05g0135031' => 'han', 'HanXRQChr05g0135041' => 'han', 'HanXRQChr05g0140021' => 'han', 'HanXRQChr06g0178981' => 'han', 'HanXRQChr07g0188251' => 'han', 'HanXRQChr08g0235311' => 'han', 'HanXRQChr09g0271011' => 'han', 'HanXRQChr10g0293321' => 'han', 'HanXRQChr13g0388171' => 'han', 'Haze_00916' => 'cav', 'Haze_05063' => 'cav', 'Haze_20814' => 'cav', 'Haze_24128' => 'cav', 'Hma1.2p1_0745F.1_g212010' => 'hma', 'Hma1.2p1_0757F.1_g213260' => 'hma', 'Hma1.2p1_0936F.1_g238840' => 'hma', 'Hma1.2p1_1735F.1_g299890' => 'hma', 'Hma1.2p1_1861F.1_g305685' => 'hma', 'HPP92_003397' => 'vpl', 'HPP92_012597' => 'vpl', 'HPP92_015520' => 'vpl', 'HPP92_015539' => 'vpl', 'HPP92_020373' => 'vpl', 'Hund04938' => 'sun', 'Hund10677' => 'sun', 'Hund11033' => 'sun', 'Hund12155' => 'sun', 'Lalb_Chr01g0022551' => 'lal', 'Lalb_Chr03g0042341' => 'lal', 'Lalb_Chr07g0192931' => 'lal', 'Lalb_Chr12g0209551' => 'lal', 'Lalb_Chr19g0125251' => 'lal', 'Lalb_Chr19g0137891' => 'lal', 'Lalb_Chr21g0304641' => 'lal', 'Lalb_Chr21g0309881' => 'lal', 'Lj1A5T12' => 'lonja', 'Lj1C148G10' => 'lonja', 'Lj2A93T83' => 'lonja', 'Lj3A738G68' => 'lonja', 'Lj3C966T1' => 'lonja', 'Lj3g0018958' => 'lja', 'Lj3g0021831' => 'lja', 'Lj3g0025443' => 'lja', 'Lj4g0026809' => 'lja', 'Lj5g0012558' => 'lja', 'Lj5g0021586' => 'lja', 'Lsat_1_v5_gn_5_156840' => 'lsa', 'Lsat_1_v5_gn_8_73460' => 'lsa', 'Lsat_1_v5_gn_8_73481' => 'lsa', 'Lsat_1_v5_gn_9_31601' => 'lsa', 'Lsat_1_v5_gn_9_77320' => 'lsa', 'Manes.01G171300' => 'mes', 'Manes.01G171400' => 'mes', 'Manes.01G236100' => 'mes', 'Manes.02G130500' => 'mes', 'Manes.02G130600' => 'mes', 'Manes.03G180200' => 'mes', 'Manes.05G007000' => 'mes', 'Manes.08G084400' => 'mes', 'Manes.09G092600' => 'mes', 'Manes.15G027900' => 'mes', 'MBI04_g40948_MAGBIO' => 'mbi', 'MBI14_g12123_MAGBIO' => 'mbi', 'MBI18_g28915_MAGBIO' => 'mbi', 'MCO09G053' => 'mco', 'MCO11G782' => 'mco', 'MCO15G215' => 'mco', 'MD03G1088500' => 'mdo', 'MD03G1088600' => 'mdo', 'MD04G1130800' => 'mdo', 'MD09G1291700' => 'mdo', 'MD11G1097500' => 'mdo', 'MD11G1097600' => 'mdo', 'MD12G1143900' => 'mdo', 'MD13G1191400' => 'mdo', 'MD16G1191500' => 'mdo', 'Medtr1g085570' => 'mtr', 'Medtr1g104610' => 'mtr', 'Medtr2g097520' => 'mtr', 'Medtr4g021800' => 'mtr', 'Medtr4g021825' => 'mtr', 'Medtr4g064270' => 'mtr', 'Medtr4g064380' => 'mtr', 'Medtr7g062150' => 'mtr', 'MELO3C003138.2' => 'cme', 'MELO3C005187.2' => 'cme', 'MELO3C009252.2' => 'cme', 'MELO3C014481.2' => 'cme', 'MELO3C020616.2' => 'cme', 'MELO3C020617.2' => 'cme', 'MELO3C020618.2' => 'cme', 'Migut.G00328' => 'egut', 'Migut.J00320' => 'egut', 'Migut.L01000' => 'egut', 'Migut.L01953' => 'egut', 'MSTRG.10253' => 'ama', 'MSTRG.19077' => 'ama', 'MSTRG.26780' => 'ama', 'MSTRG.4023' => 'ama', 'MSTRG.5655' => 'ama', 'MSTRG.9992' => 'ama', 'Nitab4.5_0000043g0310' => 'nta', 'Nitab4.5_0000463g0080' => 'nta', 'Nitab4.5_0000705g0170' => 'nta', 'Nitab4.5_0001326g0060' => 'nta', 'Nitab4.5_0001628g0030' => 'nta', 'Nitab4.5_0002103g0110' => 'nta', 'Nitab4.5_0002946g0030' => 'nta', 'Nitab4.5_0004639g0030' => 'nta', 'Nn2g11149' => 'nnu', 'Nn2g13389' => 'nnu', 'Nn4g25326' => 'nnu', 'Nn4g26290' => 'nnu', 'Nn5g29865' => 'nnu', 'Oeu004163.1' => 'oeu', 'Oeu006901.1' => 'oeu', 'Oeu010096.1' => 'oeu', 'Oeu024340.1' => 'oeu', 'Oeu048369.1' => 'oeu', 'Os01g0973000' => 'osa', 'Os03g0273800' => 'osa', 'Os03g0701200' => 'osa', 'Os03g0834050' => 'osa', 'Os07g0634400' => 'osa', 'Peaxi162Scf00092g01414' => 'pax', 'Peaxi162Scf00165g00818' => 'pax', 'Peaxi162Scf00309g00516' => 'pax', 'Peaxi162Scf00774g00218' => 'pax', 'PGR004G1824' => 'pgr', 'PGR004G2606' => 'pgr', 'PGR031G2716' => 'pgr', 'PGR102G2460' => 'pgr', 'PGR142G2599' => 'pgr', 'PGSC0003DMG400000843' => 'stu', 'PGSC0003DMG400008829' => 'stu', 'PGSC0003DMG400030418' => 'stu', 'PGSC0003DMG400031834' => 'stu', 'PGSC0003DMG401028300' => 'stu', 'PGSC0003DMG402028300' => 'stu', 'Phvul.001G219300' => 'pvu', 'Phvul.007G056000' => 'pvu', 'Phvul.007G208000' => 'pvu', 'Phvul.008G119500' => 'pvu', 'Phvul.010G011200' => 'pvu', 'Phvul.010G014800' => 'pvu', 'Phvul.011G062900' => 'pvu', 'Phvul.L007043' => 'pvu', 'Potri.001G242300' => 'ptr', 'Potri.002G185300' => 'ptr', 'Potri.006G086900' => 'ptr', 'Potri.008G151700' => 'ptr', 'Potri.009G033500' => 'ptr', 'Potri.010G089300' => 'ptr', 'Potri.014G110800' => 'ptr', 'Pp3c27_8130' => 'ppa', 'Pp3c6_27410' => 'ppa', 'PRCOL_00001659' => 'pco', 'PRCOL_00001927' => 'pco', 'PRCOL_00003649' => 'pco', 'Prupe.1G011600' => 'ppe', 'Prupe.3G000800' => 'ppe', 'Prupe.3G001100' => 'ppe', 'Prupe.6G072700' => 'ppe', 'Prupe.6G072800' => 'ppe', 'Prupe.6G257300' => 'ppe', 'Prupe.8G033000' => 'ppe', 'Psat0s2633g0080' => 'psa', 'Psat0s3396g0080' => 'psa', 'Psat0s3396g0200' => 'psa', 'Psat3g139080' => 'psa', 'Psat5g285080' => 'psa', 'Psat6g157760' => 'psa', 'Psat6g208440' => 'psa', 'Psat7g215320' => 'psa', 'Psat7g215400' => 'psa', 'Psat7g235600' => 'psa', 'Psat7g235760' => 'psa', 'PSO063G4603' => 'pso', 'PSO210G0182' => 'pso', 'PSO210G0196' => 'pso', 'PSO339G0394' => 'pso', 'PSO339G4127' => 'pso', 'PSO513G0064' => 'pso', 'PSO761G0079' => 'pso', 'QL01p031003' => 'qlo', 'QL01p031078' => 'qlo', 'QL06p003004' => 'qlo', 'QL07p048731' => 'qlo', 'QL09p037427' => 'qlo', 'RcHm_v2.0_Chr3g0466361' => 'rch', 'RcHm_v2.0_Chr3g0485571' => 'rch', 'RcHm_v2.0_Chr4g0416551' => 'rch', 'RcHm_v2.0_Chr5g0065831' => 'rch', 'Rhsim01G0230500' => 'rsi', 'Rhsim05G0194000' => 'rsi', 'Rhsim08G0250400' => 'rsi', 'Sabra02G0131000' => 'sbr', 'Sabra06G0066300' => 'sbr', 'Sabra08G0115500' => 'sbr', 'Sabra09G0023900' => 'sbr', 'Sabra10G0054000' => 'sbr', 'Sabra14G0081500' => 'sbr', 'Sabra16G0147100' => 'sbr', 'SalBow2G2957' => 'sbo', 'SalBow4G3320' => 'sbo', 'SalBow8G1894' => 'sbo', 'Sc07g0007950' => 'sci', 'Sc12g0001360' => 'sci', 'Sc13g0004330' => 'sci', 'Sc20g0005010' => 'sci', 'Sed0000361' => 'sed', 'Sed0001706' => 'sed', 'Sed0002422' => 'sed', 'Sed0004029' => 'sed', 'Sed0004602' => 'sed', 'Sed0004943' => 'sed', 'Sed0008646' => 'sed', 'Sed0023313' => 'sed', 'Sed0024843' => 'sed', 'SEGI_00081' => 'sgi', 'SEGI_00947' => 'sgi', 'SEGI_04046' => 'sgi', 'SEGI_06880' => 'sgi', 'SEGI_09736' => 'sgi', 'SEGI_12741' => 'sgi', 'SEGI_14530' => 'sgi', 'SEGI_20705' => 'sgi', 'SEGI_26088' => 'sgi', 'SEGI_28323' => 'sgi', 'SEGI_33343' => 'sgi', 'SGA_v2.0_scaffold126G33775' => 'sas', 'SGA_v2.0_scaffold2G01337' => 'sas', 'SGA_v2.0_scaffold38G15006' => 'sas', 'SGA_v2.0_scaffold39G15264' => 'sas', 'SGA_v2.0_scaffold453G51880' => 'sas', 'SHI12696' => 'shi', 'SMO367G1096' => 'smo', 'Solyc01g068630.3' => 'sly', 'Solyc05g011880.3' => 'sly', 'Solyc06g076300.3' => 'sly', 'Solyc09g010940.4' => 'sly', 'Solyc09g075890.3' => 'sly', 'Sopen01g030560' => 'spe', 'Sopen05g006630' => 'spe', 'Sopen06g032720' => 'spe', 'Sopen09g005660' => 'spe', 'Sopen09g030690' => 'spe', 'Sp4g14540' => 'spa', 'Sp4g20030' => 'spa', 'Sp5g01320' => 'spa', 'Sp6g21170' => 'spa', 'Sp6g21180' => 'spa', 'Sp6g21190' => 'spa', 'Sp6g40220' => 'spa', 'TAR362G0122' => 'tar', 'TAR362G1338' => 'tar', 'TAR369G0590' => 'tar', 'TAR371G0824' => 'tar', 'TAR622G1429' => 'tar', 'TAR623G0734' => 'tar', 'TAR625G0441' => 'tar', 'TAR629G0976' => 'tar', 'TAR633G1195' => 'tar', 'TAR636G2660' => 'tar', 'THA.LOC104799440' => 'tha', 'THA.LOC104800966' => 'tha', 'THA.LOC104806559' => 'tha', 'THA.LOC104810765' => 'tha', 'THA.LOC104816266' => 'tha', 'THA.LOC104817419' => 'tha', 'THA.LOC104827021' => 'tha', 'Thecc.01G327400' => 'tca', 'Thecc.04G229200' => 'tca', 'Thecc.05G037400' => 'tca', 'Thecc.09G318600' => 'tca', 'Thecc.09G318700' => 'tca', 'Thhalv10006238m.g' => 'esa', 'Thhalv10014321m.g' => 'esa', 'Thhalv10014335m.g' => 'esa', 'Thhalv10015826m.g' => 'esa', 'Thhalv10017107m.g' => 'esa', 'Thhalv10017180m.g' => 'esa', 'Thhalv10029339m.g' => 'esa', 'TPR.G1699' => 'tpr', 'TPR.G23609' => 'tpr', 'TPR.G3081' => 'tpr', 'TPR.G40397' => 'tpr', 'TPR.G5522' => 'tpr', 'TPR.G5618' => 'tpr', 'TPR.G5626' => 'tpr', 'TWI09G1632' => 'twi', 'TWI23G1230' => 'twi', 'TWI53G1064' => 'twi', 'TWI59G0751' => 'twi', 'TWI74G0947' => 'twi', 'TWI77G0337' => 'twi', 'TWI79G1254' => 'twi', 'unitig_0.g2341' => 'ugi', 'unitig_26.g10006' => 'ugi', 'unitig_26.g10008' => 'ugi', 'unitig_26.g9192' => 'ugi', 'vmacro14547' => 'vma', 'vmacro15333' => 'vma', 'vmacro18743' => 'vma', 'vmacro20166' => 'vma', 'VMungo0331G0523' => 'vmu', 'VMungo0331G1202' => 'vmu', 'VMungo0720G1228' => 'vmu', 'VMungo0720G1514' => 'vmu', 'VMungo1080G0169' => 'vmu', 'VMungo1127G1475' => 'vmu', 'VMungo1383G1208' => 'vmu', 'VMungo1383G1698' => 'vmu', 'Zm00001eb012270' => 'zma', 'Zm00001eb054100' => 'zma', 'Zm00001eb063350' => 'zma', 'Zm00001eb328560' => 'zma', 'Zm00001eb342820' => 'zma', 'Zm00001eb362210' => 'zma', 'Zm00001eb397730' => 'zma', 'Zm00001eb399750' => 'zma' ), 'gf_id' => 'HOM05D000959', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000959' ), 'data_identifier' => 'HOM05D000959', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000959', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '622', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p07100' => 'bna', 'A03p11720' => 'bna', 'A05p08300' => 'bna', 'A05p13380' => 'bna', 'A09p54130' => 'bna', 'A10p16690' => 'bna', 'A10p16700' => 'bna', 'A10p33390' => 'bna', 'Aa31LG10G16020' => 'aar', 'Aa31LG1G11810' => 'aar', 'Aa31LG1G11830' => 'aar', 'Aa31LG1G22510' => 'aar', 'Aa31LG5G4890' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5793' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2310' => 'aag', 'Actinidia08499' => 'ach', 'Actinidia11262' => 'ach', 'Actinidia23926' => 'ach', 'Actinidia34420' => 'ach', 'Actinidia36970' => 'ach', 'Ah.02g111220' => 'amhyb', 'Ah.15g097750' => 'amhyb', 'AL4G27500' => 'aly', 'AL6G11470' => 'aly', 'AL8G35950' => 'aly', 'AL8G35960' => 'aly', 'AL8G35970' => 'aly', 'Aqoxy1G00912' => 'aox', 'Aqoxy2G02253' => 'aox', 'Aqoxy2G02411' => 'aox', 'Aqoxy5G00485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BZ66YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K8ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM4FUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6BF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HFV7XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25JBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0YNNV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MAKK6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P70IT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP2Z6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V61LZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YWP64R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3S9AI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7PGHH' => 'arhy', 'AT2G32150' => 'ath', 'AT3G62040' => 'ath', 'AT5G02230' => 'ath', 'AT5G59480' => 'ath', 'AT5G59490' => 'ath', 'ATR0332G060' => 'atr', 'ATR0559G190' => 'atr', 'ATR0693G294' => 'atr', 'Atru.chr3.3975' => 'acertr', 'Atru.chr3.3976' => 'acertr', 'Atru.chr3.3977' => 'acertr', 'Atru.chr4.2498' => 'acertr', 'Atru.chr5.838' => 'acertr', 'Atru.chr8.1990' => 'acertr', 'Atru.chr8.1991' => 'acertr', 'Atru.chr8.1992' => 'acertr', 'AUR62001759' => 'cqu', 'AUR62009545' => 'cqu', 'AUR62010474' => 'cqu', 'AUR62025820' => 'cqu', 'AUR62030422' => 'cqu', 'AUR62033605' => 'cqu', 'AUR62038615' => 'cqu', 'AUR62041347' => 'cqu', 'BcaB01g04574' => 'bca', 'BcaB02g09263' => 'bca', 'BcaB02g10453' => 'bca', 'BcaB05g22513' => 'bca', 'BcaB08g36253' => 'bca', 'BcaB08g36254' => 'bca', 'BcaC01g06519' => 'bca', 'BcaC02g11889' => 'bca', 'BcaC03g14010' => 'bca', 'BcaC03g18439' => 'bca', 'BcaC04g19765' => 'bca', 'BcaC09g48432' => 'bca', 'BcaNung07302' => 'bca', 'BolC2t06040H' => 'bol', 'BolC2t07346H' => 'bol', 'BolC3t13817H' => 'bol', 'BolC4t22625H' => 'bol', 'BolC4t23297H' => 'bol', 'BolC8t51278H' => 'bol', 'BolC9t58050H' => 'bol', 'BolC9t58051H' => 'bol', 'BolC9t60163H' => 'bol', 'BraA02t04712Z' => 'bra', 'BraA02t05791Z' => 'bra', 'BraA03t10483Z' => 'bra', 'BraA05t19795Z' => 'bra', 'BraA05t20276Z' => 'bra', 'BraA09t40827Z' => 'bra', 'BraA10t43750Z' => 'bra', 'BraA10t43751Z' => 'bra', 'BraA10t45370Z' => 'bra', 'C02p00400' => 'bna', 'C02p12460' => 'bna', 'C03p13680' => 'bna', 'C04p10270' => 'bna', 'C04p17500' => 'bna', 'C08p37010' => 'bna', 'C09p51880' => 'bna', 'C09p51890' => 'bna', 'C09p74300' => 'bna', 'CAN.G179.26' => 'can', 'CAN.G3384.1' => 'can', 'CAN.G394.68' => 'can', 'CAN.G907.13' => 'can', 'CANSAT11G0012' => 'cansat', 'CANSAT25G1586' => 'cansat', 'CANSAT35G0735' => 'cansat', 'CANSAT54G0556' => 'cansat', 'CANSAT64G0356' => 'cansat', 'CANSAT78G2042' => 'cansat', 'CARHR125920' => 'chi', 'CARHR131910' => 'chi', 'CARHR172390' => 'chi', 'CARHR211140' => 'chi', 'CARHR285850' => 'chi', 'CARHR285860' => 'chi', 'Carub.0004s1347' => 'cru', 'Carub.0004s1960' => 'cru', 'Carub.0005s2880' => 'cru', 'Carub.0006s0107' => 'cru', 'Carub.0008s2015' => 'cru', 'Carub.0008s2016' => 'cru', 'Carub.0008s2017' => 'cru', 'Ca_01315_v3' => 'car', 'Ca_05063_v3' => 'car', 'Ca_10231_v3' => 'car', 'Ca_10913_v3' => 'car', 'Ca_19156_v3' => 'car', 'Ca_23644_v3' => 'car', 'Ca_26735_v3' => 'car', 'Cc01_g13130' => 'ccan', 'Cc02_g21690' => 'ccan', 'Cc03_g03600' => 'ccan', 'Cc06_g02510' => 'ccan', 'CDE02G1265' => 'cde', 'CDE05G0415' => 'cde', 'CDE08G1082' => 'cde', 'Cfa005780' => 'cfa', 'Cfa011522' => 'cfa', 'Cfa011523' => 'cfa', 'Cfa015627' => 'cfa', 'Cfa017359' => 'cfa', 'Ciclev10005687m.g' => 'ccl', 'Ciclev10012173m.g' => 'ccl', 'Ciclev10021621m.g' => 'ccl', 'Ciclev10028968m.g' => 'ccl', 'Ciclev10029907m.g' => 'ccl', 'CiPaw.01G164800' => 'cil', 'CiPaw.07G083700' => 'cil', 'CiPaw.07G127000' => 'cil', 'CiPaw.07G136900' => 'cil', 'CiPaw.08G081700' => 'cil', 'CiPaw.09G194600' => 'cil', 'CiPaw.10G146500' => 'cil', 'CiPaw.13G091500' => 'cil', 'CiPaw.13G091600' => 'cil', 'ClCG00G003390' => 'cla', 'ClCG01G007220' => 'cla', 'ClCG03G001370' => 'cla', 'ClCG04G008100' => 'cla', 'ClCG06G006110' => 'cla', 'ClCG06G006130' => 'cla', 'ClCG10G021210' => 'cla', 'COL.COLO4_07648' => 'col', 'COL.COLO4_07650' => 'col', 'COL.COLO4_07651' => 'col', 'COL.COLO4_14780' => 'col', 'COL.COLO4_18546' => 'col', 'COL.COLO4_18547' => 'col', 'COL.COLO4_23103' => 'col', 'COL.COLO4_30419' => 'col', 'COL.COLO4_34232' => 'col', 'Cpa.g.sc169.20' => 'cpa', 'Cpa.g.sc57.45' => 'cpa', 'Cpa.g.sc58.124' => 'cpa', 'Cpa.g.sc58.125' => 'cpa', 'Cpa.g.sc81.118' => 'cpa', 'Cpa.g.sc81.119' => 'cpa', 'Cre12.g524700' => 'cre', 'CsaV3_1G034430' => 'csa', 'CsaV3_1G034440' => 'csa', 'CsaV3_1G034450' => 'csa', 'CsaV3_3G034830' => 'csa', 'CsaV3_4G025090' => 'csa', 'CsaV3_5G018660' => 'csa', 'CsaV3_6G038160' => 'csa', 'CSS0003447' => 'camsi', 'CSS0017840' => 'camsi', 'CSS0019260' => 'camsi', 'CSS0040375' => 'camsi', 'CSS0042533' => 'camsi', 'DCAR_005960' => 'dca', 'DCAR_012104' => 'dca', 'DCAR_012105' => 'dca', 'DCAR_012293' => 'dca', 'DCAR_015632' => 'dca', 'DCAR_024602' => 'dca', 'DCAR_028752' => 'dca', 'Dinv06261' => 'din', 'Dinv13982' => 'din', 'Dinv17029' => 'din', 'Dinv18463' => 'din', 'Dinv33181' => 'din', 'Dinv35585' => 'din', 'Dinv37161' => 'din', 'Dinv42977' => 'din', 'Dinv43122' => 'din', 'Dinv44517' => 'din', 'Duzib093G0256' => 'dzi', 'Duzib106G1254' => 'dzi', 'Duzib128G1789' => 'dzi', 'Duzib133G0633' => 'dzi', 'Duzib138G0510' => 'dzi', 'Duzib150G1084' => 'dzi', 'Duzib168G0488' => 'dzi', 'Duzib168G1523' => 'dzi', 'Duzib170G0133' => 'dzi', 'ECA234G1433' => 'eca', 'ECA236G1432' => 'eca', 'ECA236G2256' => 'eca', 'ECA236G2365' => 'eca', 'ECA236G4830' => 'eca', 'ECA248G1505' => 'eca', 'EL10Ac3g06431' => 'bvu', 'EL10Ac5g12577' => 'bvu', 'EL10Ac6g13533' => 'bvu', 'EL10Ac7g16045' => 'bvu', 'Eucgr.A01281' => 'egr', 'Eucgr.B02326' => 'egr', 'Eucgr.H03532' => 'egr', 'Eucgr.K00553' => 'egr', 'Eucgr.K03116' => 'egr', 'FAN02G3963' => 'fan', 'FAN05G0438' => 'fan', 'FAN09G2434' => 'fan', 'FAN12G3984' => 'fan', 'FAN14G0798' => 'fan', 'FAN17G0652' => 'fan', 'FAN19G1988' => 'fan', 'FAN22G0632' => 'fan', 'FAN23G0387' => 'fan', 'FAN26G1323' => 'fan', 'FAN28G0666' => 'fan', 'FvH4_1g26080' => 'fve', 'FvH4_3g36780' => 'fve', 'FvH4_4g15270' => 'fve', 'FvH4_6g13490' => 'fve', 'Glyma.01G098700' => 'gma', 'Glyma.03G065900' => 'gma', 'Glyma.03G073754' => 'gma', 'Glyma.03G073758' => 'gma', 'Glyma.03G083200' => 'gma', 'Glyma.03G225500' => 'gma', 'Glyma.05G037766' => 'gma', 'Glyma.07G133500' => 'gma', 'Glyma.10G139400' => 'gma', 'Glyma.10G248900' => 'gma', 'Glyma.11G137800' => 'gma', 'Glyma.12G061300' => 'gma', 'Glyma.13G337900' => 'gma', 'Glyma.15G036600' => 'gma', 'Glyma.18G182800' => 'gma', 'Glyma.19G222500' => 'gma', 'Glyma.20G144800' => 'gma', 'Gohir.A01G222000' => 'ghi', 'Gohir.A03G044000' => 'ghi', 'Gohir.A03G044100' => 'ghi', 'Gohir.A04G083100' => 'ghi', 'Gohir.A07G127200' => 'ghi', 'Gohir.A07G132400' => 'ghi', 'Gohir.A08G000700' => 'ghi', 'Gohir.A11G327300' => 'ghi', 'Gohir.D01G211500' => 'ghi', 'Gohir.D03G123400' => 'ghi', 'Gohir.D03G123500' => 'ghi', 'Gohir.D04G121800' => 'ghi', 'Gohir.D07G131500' => 'ghi', 'Gohir.D07G136600' => 'ghi', 'Gohir.D08G011600' => 'ghi', 'Gohir.D11G346200' => 'ghi', 'Gorai.001G142800' => 'gra', 'Gorai.001G148700' => 'gra', 'Gorai.002G257300' => 'gra', 'Gorai.003G130000' => 'gra', 'Gorai.003G130100' => 'gra', 'Gorai.004G005300' => 'gra', 'Gorai.007G376500' => 'gra', 'Gorai.012G104700' => 'gra', 'GSVIVG01017946001' => 'vvi', 'GSVIVG01024928001' => 'vvi', 'GSVIVG01028227001' => 'vvi', 'GSVIVG01034151001' => 'vvi', 'HanXRQChr05g0135031' => 'han', 'HanXRQChr05g0135041' => 'han', 'HanXRQChr05g0140021' => 'han', 'HanXRQChr06g0178981' => 'han', 'HanXRQChr07g0188251' => 'han', 'HanXRQChr08g0235311' => 'han', 'HanXRQChr09g0271011' => 'han', 'HanXRQChr10g0293321' => 'han', 'HanXRQChr13g0388171' => 'han', 'Haze_00916' => 'cav', 'Haze_05063' => 'cav', 'Haze_20814' => 'cav', 'Haze_24128' => 'cav', 'Hma1.2p1_0745F.1_g212010' => 'hma', 'Hma1.2p1_0757F.1_g213260' => 'hma', 'Hma1.2p1_0936F.1_g238840' => 'hma', 'Hma1.2p1_1735F.1_g299890' => 'hma', 'Hma1.2p1_1861F.1_g305685' => 'hma', 'HPP92_003397' => 'vpl', 'HPP92_012597' => 'vpl', 'HPP92_015520' => 'vpl', 'HPP92_015539' => 'vpl', 'HPP92_020373' => 'vpl', 'Hund04938' => 'sun', 'Hund10677' => 'sun', 'Hund11033' => 'sun', 'Hund12155' => 'sun', 'Lalb_Chr01g0022551' => 'lal', 'Lalb_Chr03g0042341' => 'lal', 'Lalb_Chr07g0192931' => 'lal', 'Lalb_Chr12g0209551' => 'lal', 'Lalb_Chr19g0125251' => 'lal', 'Lalb_Chr19g0137891' => 'lal', 'Lalb_Chr21g0304641' => 'lal', 'Lalb_Chr21g0309881' => 'lal', 'Lj1A5T12' => 'lonja', 'Lj1C148G10' => 'lonja', 'Lj2A93T83' => 'lonja', 'Lj3A738G68' => 'lonja', 'Lj3C966T1' => 'lonja', 'Lj3g0018958' => 'lja', 'Lj3g0021831' => 'lja', 'Lj3g0025443' => 'lja', 'Lj4g0026809' => 'lja', 'Lj5g0012558' => 'lja', 'Lj5g0021586' => 'lja', 'Lsat_1_v5_gn_5_156840' => 'lsa', 'Lsat_1_v5_gn_8_73460' => 'lsa', 'Lsat_1_v5_gn_8_73481' => 'lsa', 'Lsat_1_v5_gn_9_31601' => 'lsa', 'Lsat_1_v5_gn_9_77320' => 'lsa', 'Manes.01G171300' => 'mes', 'Manes.01G171400' => 'mes', 'Manes.01G236100' => 'mes', 'Manes.02G130500' => 'mes', 'Manes.02G130600' => 'mes', 'Manes.03G180200' => 'mes', 'Manes.05G007000' => 'mes', 'Manes.08G084400' => 'mes', 'Manes.09G092600' => 'mes', 'Manes.15G027900' => 'mes', 'MBI04_g40948_MAGBIO' => 'mbi', 'MBI14_g12123_MAGBIO' => 'mbi', 'MBI18_g28915_MAGBIO' => 'mbi', 'MCO09G053' => 'mco', 'MCO11G782' => 'mco', 'MCO15G215' => 'mco', 'MD03G1088500' => 'mdo', 'MD03G1088600' => 'mdo', 'MD04G1130800' => 'mdo', 'MD09G1291700' => 'mdo', 'MD11G1097500' => 'mdo', 'MD11G1097600' => 'mdo', 'MD12G1143900' => 'mdo', 'MD13G1191400' => 'mdo', 'MD16G1191500' => 'mdo', 'Medtr1g085570' => 'mtr', 'Medtr1g104610' => 'mtr', 'Medtr2g097520' => 'mtr', 'Medtr4g021800' => 'mtr', 'Medtr4g021825' => 'mtr', 'Medtr4g064270' => 'mtr', 'Medtr4g064380' => 'mtr', 'Medtr7g062150' => 'mtr', 'MELO3C003138.2' => 'cme', 'MELO3C005187.2' => 'cme', 'MELO3C009252.2' => 'cme', 'MELO3C014481.2' => 'cme', 'MELO3C020616.2' => 'cme', 'MELO3C020617.2' => 'cme', 'MELO3C020618.2' => 'cme', 'Migut.G00328' => 'egut', 'Migut.J00320' => 'egut', 'Migut.L01000' => 'egut', 'Migut.L01953' => 'egut', 'MSTRG.10253' => 'ama', 'MSTRG.19077' => 'ama', 'MSTRG.26780' => 'ama', 'MSTRG.4023' => 'ama', 'MSTRG.5655' => 'ama', 'MSTRG.9992' => 'ama', 'Nitab4.5_0000043g0310' => 'nta', 'Nitab4.5_0000463g0080' => 'nta', 'Nitab4.5_0000705g0170' => 'nta', 'Nitab4.5_0001326g0060' => 'nta', 'Nitab4.5_0001628g0030' => 'nta', 'Nitab4.5_0002103g0110' => 'nta', 'Nitab4.5_0002946g0030' => 'nta', 'Nitab4.5_0004639g0030' => 'nta', 'Nn2g11149' => 'nnu', 'Nn2g13389' => 'nnu', 'Nn4g25326' => 'nnu', 'Nn4g26290' => 'nnu', 'Nn5g29865' => 'nnu', 'Oeu004163.1' => 'oeu', 'Oeu006901.1' => 'oeu', 'Oeu010096.1' => 'oeu', 'Oeu024340.1' => 'oeu', 'Oeu048369.1' => 'oeu', 'Os01g0973000' => 'osa', 'Os03g0273800' => 'osa', 'Os03g0701200' => 'osa', 'Os03g0834050' => 'osa', 'Os07g0634400' => 'osa', 'Peaxi162Scf00092g01414' => 'pax', 'Peaxi162Scf00165g00818' => 'pax', 'Peaxi162Scf00309g00516' => 'pax', 'Peaxi162Scf00774g00218' => 'pax', 'PGR004G1824' => 'pgr', 'PGR004G2606' => 'pgr', 'PGR031G2716' => 'pgr', 'PGR102G2460' => 'pgr', 'PGR142G2599' => 'pgr', 'PGSC0003DMG400000843' => 'stu', 'PGSC0003DMG400008829' => 'stu', 'PGSC0003DMG400030418' => 'stu', 'PGSC0003DMG400031834' => 'stu', 'PGSC0003DMG401028300' => 'stu', 'PGSC0003DMG402028300' => 'stu', 'Phvul.001G219300' => 'pvu', 'Phvul.007G056000' => 'pvu', 'Phvul.007G208000' => 'pvu', 'Phvul.008G119500' => 'pvu', 'Phvul.010G011200' => 'pvu', 'Phvul.010G014800' => 'pvu', 'Phvul.011G062900' => 'pvu', 'Phvul.L007043' => 'pvu', 'Potri.001G242300' => 'ptr', 'Potri.002G185300' => 'ptr', 'Potri.006G086900' => 'ptr', 'Potri.008G151700' => 'ptr', 'Potri.009G033500' => 'ptr', 'Potri.010G089300' => 'ptr', 'Potri.014G110800' => 'ptr', 'Pp3c27_8130' => 'ppa', 'Pp3c6_27410' => 'ppa', 'PRCOL_00001659' => 'pco', 'PRCOL_00001927' => 'pco', 'PRCOL_00003649' => 'pco', 'Prupe.1G011600' => 'ppe', 'Prupe.3G000800' => 'ppe', 'Prupe.3G001100' => 'ppe', 'Prupe.6G072700' => 'ppe', 'Prupe.6G072800' => 'ppe', 'Prupe.6G257300' => 'ppe', 'Prupe.8G033000' => 'ppe', 'Psat0s2633g0080' => 'psa', 'Psat0s3396g0080' => 'psa', 'Psat0s3396g0200' => 'psa', 'Psat3g139080' => 'psa', 'Psat5g285080' => 'psa', 'Psat6g157760' => 'psa', 'Psat6g208440' => 'psa', 'Psat7g215320' => 'psa', 'Psat7g215400' => 'psa', 'Psat7g235600' => 'psa', 'Psat7g235760' => 'psa', 'PSO063G4603' => 'pso', 'PSO210G0182' => 'pso', 'PSO210G0196' => 'pso', 'PSO339G0394' => 'pso', 'PSO339G4127' => 'pso', 'PSO513G0064' => 'pso', 'PSO761G0079' => 'pso', 'QL01p031003' => 'qlo', 'QL01p031078' => 'qlo', 'QL06p003004' => 'qlo', 'QL07p048731' => 'qlo', 'QL09p037427' => 'qlo', 'RcHm_v2.0_Chr3g0466361' => 'rch', 'RcHm_v2.0_Chr3g0485571' => 'rch', 'RcHm_v2.0_Chr4g0416551' => 'rch', 'RcHm_v2.0_Chr5g0065831' => 'rch', 'Rhsim01G0230500' => 'rsi', 'Rhsim05G0194000' => 'rsi', 'Rhsim08G0250400' => 'rsi', 'Sabra02G0131000' => 'sbr', 'Sabra06G0066300' => 'sbr', 'Sabra08G0115500' => 'sbr', 'Sabra09G0023900' => 'sbr', 'Sabra10G0054000' => 'sbr', 'Sabra14G0081500' => 'sbr', 'Sabra16G0147100' => 'sbr', 'SalBow2G2957' => 'sbo', 'SalBow4G3320' => 'sbo', 'SalBow8G1894' => 'sbo', 'Sc07g0007950' => 'sci', 'Sc12g0001360' => 'sci', 'Sc13g0004330' => 'sci', 'Sc20g0005010' => 'sci', 'Sed0000361' => 'sed', 'Sed0001706' => 'sed', 'Sed0002422' => 'sed', 'Sed0004029' => 'sed', 'Sed0004602' => 'sed', 'Sed0004943' => 'sed', 'Sed0008646' => 'sed', 'Sed0023313' => 'sed', 'Sed0024843' => 'sed', 'SEGI_00081' => 'sgi', 'SEGI_00947' => 'sgi', 'SEGI_04046' => 'sgi', 'SEGI_06880' => 'sgi', 'SEGI_09736' => 'sgi', 'SEGI_12741' => 'sgi', 'SEGI_14530' => 'sgi', 'SEGI_20705' => 'sgi', 'SEGI_26088' => 'sgi', 'SEGI_28323' => 'sgi', 'SEGI_33343' => 'sgi', 'SGA_v2.0_scaffold126G33775' => 'sas', 'SGA_v2.0_scaffold2G01337' => 'sas', 'SGA_v2.0_scaffold38G15006' => 'sas', 'SGA_v2.0_scaffold39G15264' => 'sas', 'SGA_v2.0_scaffold453G51880' => 'sas', 'SHI12696' => 'shi', 'SMO367G1096' => 'smo', 'Solyc01g068630.3' => 'sly', 'Solyc05g011880.3' => 'sly', 'Solyc06g076300.3' => 'sly', 'Solyc09g010940.4' => 'sly', 'Solyc09g075890.3' => 'sly', 'Sopen01g030560' => 'spe', 'Sopen05g006630' => 'spe', 'Sopen06g032720' => 'spe', 'Sopen09g005660' => 'spe', 'Sopen09g030690' => 'spe', 'Sp4g14540' => 'spa', 'Sp4g20030' => 'spa', 'Sp5g01320' => 'spa', 'Sp6g21170' => 'spa', 'Sp6g21180' => 'spa', 'Sp6g21190' => 'spa', 'Sp6g40220' => 'spa', 'TAR362G0122' => 'tar', 'TAR362G1338' => 'tar', 'TAR369G0590' => 'tar', 'TAR371G0824' => 'tar', 'TAR622G1429' => 'tar', 'TAR623G0734' => 'tar', 'TAR625G0441' => 'tar', 'TAR629G0976' => 'tar', 'TAR633G1195' => 'tar', 'TAR636G2660' => 'tar', 'THA.LOC104799440' => 'tha', 'THA.LOC104800966' => 'tha', 'THA.LOC104806559' => 'tha', 'THA.LOC104810765' => 'tha', 'THA.LOC104816266' => 'tha', 'THA.LOC104817419' => 'tha', 'THA.LOC104827021' => 'tha', 'Thecc.01G327400' => 'tca', 'Thecc.04G229200' => 'tca', 'Thecc.05G037400' => 'tca', 'Thecc.09G318600' => 'tca', 'Thecc.09G318700' => 'tca', 'Thhalv10006238m.g' => 'esa', 'Thhalv10014321m.g' => 'esa', 'Thhalv10014335m.g' => 'esa', 'Thhalv10015826m.g' => 'esa', 'Thhalv10017107m.g' => 'esa', 'Thhalv10017180m.g' => 'esa', 'Thhalv10029339m.g' => 'esa', 'TPR.G1699' => 'tpr', 'TPR.G23609' => 'tpr', 'TPR.G3081' => 'tpr', 'TPR.G40397' => 'tpr', 'TPR.G5522' => 'tpr', 'TPR.G5618' => 'tpr', 'TPR.G5626' => 'tpr', 'TWI09G1632' => 'twi', 'TWI23G1230' => 'twi', 'TWI53G1064' => 'twi', 'TWI59G0751' => 'twi', 'TWI74G0947' => 'twi', 'TWI77G0337' => 'twi', 'TWI79G1254' => 'twi', 'unitig_0.g2341' => 'ugi', 'unitig_26.g10006' => 'ugi', 'unitig_26.g10008' => 'ugi', 'unitig_26.g9192' => 'ugi', 'vmacro14547' => 'vma', 'vmacro15333' => 'vma', 'vmacro18743' => 'vma', 'vmacro20166' => 'vma', 'VMungo0331G0523' => 'vmu', 'VMungo0331G1202' => 'vmu', 'VMungo0720G1228' => 'vmu', 'VMungo0720G1514' => 'vmu', 'VMungo1080G0169' => 'vmu', 'VMungo1127G1475' => 'vmu', 'VMungo1383G1208' => 'vmu', 'VMungo1383G1698' => 'vmu', 'Zm00001eb012270' => 'zma', 'Zm00001eb054100' => 'zma', 'Zm00001eb063350' => 'zma', 'Zm00001eb328560' => 'zma', 'Zm00001eb342820' => 'zma', 'Zm00001eb362210' => 'zma', 'Zm00001eb397730' => 'zma', 'Zm00001eb399750' => 'zma' ) $gf_id = 'HOM05D000959' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000959' ) $data_identifier = 'HOM05D000959' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 5, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 5, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 10, 'mbi' => (int) 3, 'mco' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 2, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 3, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 11, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399750' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000959', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '622', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p07100' => 'bna', 'A03p11720' => 'bna', 'A05p08300' => 'bna', 'A05p13380' => 'bna', 'A09p54130' => 'bna', 'A10p16690' => 'bna', 'A10p16700' => 'bna', 'A10p33390' => 'bna', 'Aa31LG10G16020' => 'aar', 'Aa31LG1G11810' => 'aar', 'Aa31LG1G11830' => 'aar', 'Aa31LG1G22510' => 'aar', 'Aa31LG5G4890' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5793' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2310' => 'aag', 'Actinidia08499' => 'ach', 'Actinidia11262' => 'ach', 'Actinidia23926' => 'ach', 'Actinidia34420' => 'ach', 'Actinidia36970' => 'ach', 'Ah.02g111220' => 'amhyb', 'Ah.15g097750' => 'amhyb', 'AL4G27500' => 'aly', 'AL6G11470' => 'aly', 'AL8G35950' => 'aly', 'AL8G35960' => 'aly', 'AL8G35970' => 'aly', 'Aqoxy1G00912' => 'aox', 'Aqoxy2G02253' => 'aox', 'Aqoxy2G02411' => 'aox', 'Aqoxy5G00485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BZ66YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K8ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM4FUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6BF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HFV7XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25JBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0YNNV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MAKK6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P70IT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP2Z6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V61LZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YWP64R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3S9AI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7PGHH' => 'arhy', 'AT2G32150' => 'ath', 'AT3G62040' => 'ath', 'AT5G02230' => 'ath', 'AT5G59480' => 'ath', 'AT5G59490' => 'ath', 'ATR0332G060' => 'atr', 'ATR0559G190' => 'atr', 'ATR0693G294' => 'atr', 'Atru.chr3.3975' => 'acertr', 'Atru.chr3.3976' => 'acertr', 'Atru.chr3.3977' => 'acertr', 'Atru.chr4.2498' => 'acertr', 'Atru.chr5.838' => 'acertr', 'Atru.chr8.1990' => 'acertr', 'Atru.chr8.1991' => 'acertr', 'Atru.chr8.1992' => 'acertr', 'AUR62001759' => 'cqu', 'AUR62009545' => 'cqu', 'AUR62010474' => 'cqu', 'AUR62025820' => 'cqu', 'AUR62030422' => 'cqu', 'AUR62033605' => 'cqu', 'AUR62038615' => 'cqu', 'AUR62041347' => 'cqu', 'BcaB01g04574' => 'bca', 'BcaB02g09263' => 'bca', 'BcaB02g10453' => 'bca', 'BcaB05g22513' => 'bca', 'BcaB08g36253' => 'bca', 'BcaB08g36254' => 'bca', 'BcaC01g06519' => 'bca', 'BcaC02g11889' => 'bca', 'BcaC03g14010' => 'bca', 'BcaC03g18439' => 'bca', 'BcaC04g19765' => 'bca', 'BcaC09g48432' => 'bca', 'BcaNung07302' => 'bca', 'BolC2t06040H' => 'bol', 'BolC2t07346H' => 'bol', 'BolC3t13817H' => 'bol', 'BolC4t22625H' => 'bol', 'BolC4t23297H' => 'bol', 'BolC8t51278H' => 'bol', 'BolC9t58050H' => 'bol', 'BolC9t58051H' => 'bol', 'BolC9t60163H' => 'bol', 'BraA02t04712Z' => 'bra', 'BraA02t05791Z' => 'bra', 'BraA03t10483Z' => 'bra', 'BraA05t19795Z' => 'bra', 'BraA05t20276Z' => 'bra', 'BraA09t40827Z' => 'bra', 'BraA10t43750Z' => 'bra', 'BraA10t43751Z' => 'bra', 'BraA10t45370Z' => 'bra', 'C02p00400' => 'bna', 'C02p12460' => 'bna', 'C03p13680' => 'bna', 'C04p10270' => 'bna', 'C04p17500' => 'bna', 'C08p37010' => 'bna', 'C09p51880' => 'bna', 'C09p51890' => 'bna', 'C09p74300' => 'bna', 'CAN.G179.26' => 'can', 'CAN.G3384.1' => 'can', 'CAN.G394.68' => 'can', 'CAN.G907.13' => 'can', 'CANSAT11G0012' => 'cansat', 'CANSAT25G1586' => 'cansat', 'CANSAT35G0735' => 'cansat', 'CANSAT54G0556' => 'cansat', 'CANSAT64G0356' => 'cansat', 'CANSAT78G2042' => 'cansat', 'CARHR125920' => 'chi', 'CARHR131910' => 'chi', 'CARHR172390' => 'chi', 'CARHR211140' => 'chi', 'CARHR285850' => 'chi', 'CARHR285860' => 'chi', 'Carub.0004s1347' => 'cru', 'Carub.0004s1960' => 'cru', 'Carub.0005s2880' => 'cru', 'Carub.0006s0107' => 'cru', 'Carub.0008s2015' => 'cru', 'Carub.0008s2016' => 'cru', 'Carub.0008s2017' => 'cru', 'Ca_01315_v3' => 'car', 'Ca_05063_v3' => 'car', 'Ca_10231_v3' => 'car', 'Ca_10913_v3' => 'car', 'Ca_19156_v3' => 'car', 'Ca_23644_v3' => 'car', 'Ca_26735_v3' => 'car', 'Cc01_g13130' => 'ccan', 'Cc02_g21690' => 'ccan', 'Cc03_g03600' => 'ccan', 'Cc06_g02510' => 'ccan', 'CDE02G1265' => 'cde', 'CDE05G0415' => 'cde', 'CDE08G1082' => 'cde', 'Cfa005780' => 'cfa', 'Cfa011522' => 'cfa', 'Cfa011523' => 'cfa', 'Cfa015627' => 'cfa', 'Cfa017359' => 'cfa', 'Ciclev10005687m.g' => 'ccl', 'Ciclev10012173m.g' => 'ccl', 'Ciclev10021621m.g' => 'ccl', 'Ciclev10028968m.g' => 'ccl', 'Ciclev10029907m.g' => 'ccl', 'CiPaw.01G164800' => 'cil', 'CiPaw.07G083700' => 'cil', 'CiPaw.07G127000' => 'cil', 'CiPaw.07G136900' => 'cil', 'CiPaw.08G081700' => 'cil', 'CiPaw.09G194600' => 'cil', 'CiPaw.10G146500' => 'cil', 'CiPaw.13G091500' => 'cil', 'CiPaw.13G091600' => 'cil', 'ClCG00G003390' => 'cla', 'ClCG01G007220' => 'cla', 'ClCG03G001370' => 'cla', 'ClCG04G008100' => 'cla', 'ClCG06G006110' => 'cla', 'ClCG06G006130' => 'cla', 'ClCG10G021210' => 'cla', 'COL.COLO4_07648' => 'col', 'COL.COLO4_07650' => 'col', 'COL.COLO4_07651' => 'col', 'COL.COLO4_14780' => 'col', 'COL.COLO4_18546' => 'col', 'COL.COLO4_18547' => 'col', 'COL.COLO4_23103' => 'col', 'COL.COLO4_30419' => 'col', 'COL.COLO4_34232' => 'col', 'Cpa.g.sc169.20' => 'cpa', 'Cpa.g.sc57.45' => 'cpa', 'Cpa.g.sc58.124' => 'cpa', 'Cpa.g.sc58.125' => 'cpa', 'Cpa.g.sc81.118' => 'cpa', 'Cpa.g.sc81.119' => 'cpa', 'Cre12.g524700' => 'cre', 'CsaV3_1G034430' => 'csa', 'CsaV3_1G034440' => 'csa', 'CsaV3_1G034450' => 'csa', 'CsaV3_3G034830' => 'csa', 'CsaV3_4G025090' => 'csa', 'CsaV3_5G018660' => 'csa', 'CsaV3_6G038160' => 'csa', 'CSS0003447' => 'camsi', 'CSS0017840' => 'camsi', 'CSS0019260' => 'camsi', 'CSS0040375' => 'camsi', 'CSS0042533' => 'camsi', 'DCAR_005960' => 'dca', 'DCAR_012104' => 'dca', 'DCAR_012105' => 'dca', 'DCAR_012293' => 'dca', 'DCAR_015632' => 'dca', 'DCAR_024602' => 'dca', 'DCAR_028752' => 'dca', 'Dinv06261' => 'din', 'Dinv13982' => 'din', 'Dinv17029' => 'din', 'Dinv18463' => 'din', 'Dinv33181' => 'din', 'Dinv35585' => 'din', 'Dinv37161' => 'din', 'Dinv42977' => 'din', 'Dinv43122' => 'din', 'Dinv44517' => 'din', 'Duzib093G0256' => 'dzi', 'Duzib106G1254' => 'dzi', 'Duzib128G1789' => 'dzi', 'Duzib133G0633' => 'dzi', 'Duzib138G0510' => 'dzi', 'Duzib150G1084' => 'dzi', 'Duzib168G0488' => 'dzi', 'Duzib168G1523' => 'dzi', 'Duzib170G0133' => 'dzi', 'ECA234G1433' => 'eca', 'ECA236G1432' => 'eca', 'ECA236G2256' => 'eca', 'ECA236G2365' => 'eca', 'ECA236G4830' => 'eca', 'ECA248G1505' => 'eca', 'EL10Ac3g06431' => 'bvu', 'EL10Ac5g12577' => 'bvu', 'EL10Ac6g13533' => 'bvu', 'EL10Ac7g16045' => 'bvu', 'Eucgr.A01281' => 'egr', 'Eucgr.B02326' => 'egr', 'Eucgr.H03532' => 'egr', 'Eucgr.K00553' => 'egr', 'Eucgr.K03116' => 'egr', 'FAN02G3963' => 'fan', 'FAN05G0438' => 'fan', 'FAN09G2434' => 'fan', 'FAN12G3984' => 'fan', 'FAN14G0798' => 'fan', 'FAN17G0652' => 'fan', 'FAN19G1988' => 'fan', 'FAN22G0632' => 'fan', 'FAN23G0387' => 'fan', 'FAN26G1323' => 'fan', 'FAN28G0666' => 'fan', 'FvH4_1g26080' => 'fve', 'FvH4_3g36780' => 'fve', 'FvH4_4g15270' => 'fve', 'FvH4_6g13490' => 'fve', 'Glyma.01G098700' => 'gma', 'Glyma.03G065900' => 'gma', 'Glyma.03G073754' => 'gma', 'Glyma.03G073758' => 'gma', 'Glyma.03G083200' => 'gma', 'Glyma.03G225500' => 'gma', 'Glyma.05G037766' => 'gma', 'Glyma.07G133500' => 'gma', 'Glyma.10G139400' => 'gma', 'Glyma.10G248900' => 'gma', 'Glyma.11G137800' => 'gma', 'Glyma.12G061300' => 'gma', 'Glyma.13G337900' => 'gma', 'Glyma.15G036600' => 'gma', 'Glyma.18G182800' => 'gma', 'Glyma.19G222500' => 'gma', 'Glyma.20G144800' => 'gma', 'Gohir.A01G222000' => 'ghi', 'Gohir.A03G044000' => 'ghi', 'Gohir.A03G044100' => 'ghi', 'Gohir.A04G083100' => 'ghi', 'Gohir.A07G127200' => 'ghi', 'Gohir.A07G132400' => 'ghi', 'Gohir.A08G000700' => 'ghi', 'Gohir.A11G327300' => 'ghi', 'Gohir.D01G211500' => 'ghi', 'Gohir.D03G123400' => 'ghi', 'Gohir.D03G123500' => 'ghi', 'Gohir.D04G121800' => 'ghi', 'Gohir.D07G131500' => 'ghi', 'Gohir.D07G136600' => 'ghi', 'Gohir.D08G011600' => 'ghi', 'Gohir.D11G346200' => 'ghi', 'Gorai.001G142800' => 'gra', 'Gorai.001G148700' => 'gra', 'Gorai.002G257300' => 'gra', 'Gorai.003G130000' => 'gra', 'Gorai.003G130100' => 'gra', 'Gorai.004G005300' => 'gra', 'Gorai.007G376500' => 'gra', 'Gorai.012G104700' => 'gra', 'GSVIVG01017946001' => 'vvi', 'GSVIVG01024928001' => 'vvi', 'GSVIVG01028227001' => 'vvi', 'GSVIVG01034151001' => 'vvi', 'HanXRQChr05g0135031' => 'han', 'HanXRQChr05g0135041' => 'han', 'HanXRQChr05g0140021' => 'han', 'HanXRQChr06g0178981' => 'han', 'HanXRQChr07g0188251' => 'han', 'HanXRQChr08g0235311' => 'han', 'HanXRQChr09g0271011' => 'han', 'HanXRQChr10g0293321' => 'han', 'HanXRQChr13g0388171' => 'han', 'Haze_00916' => 'cav', 'Haze_05063' => 'cav', 'Haze_20814' => 'cav', 'Haze_24128' => 'cav', 'Hma1.2p1_0745F.1_g212010' => 'hma', 'Hma1.2p1_0757F.1_g213260' => 'hma', 'Hma1.2p1_0936F.1_g238840' => 'hma', 'Hma1.2p1_1735F.1_g299890' => 'hma', 'Hma1.2p1_1861F.1_g305685' => 'hma', 'HPP92_003397' => 'vpl', 'HPP92_012597' => 'vpl', 'HPP92_015520' => 'vpl', 'HPP92_015539' => 'vpl', 'HPP92_020373' => 'vpl', 'Hund04938' => 'sun', 'Hund10677' => 'sun', 'Hund11033' => 'sun', 'Hund12155' => 'sun', 'Lalb_Chr01g0022551' => 'lal', 'Lalb_Chr03g0042341' => 'lal', 'Lalb_Chr07g0192931' => 'lal', 'Lalb_Chr12g0209551' => 'lal', 'Lalb_Chr19g0125251' => 'lal', 'Lalb_Chr19g0137891' => 'lal', 'Lalb_Chr21g0304641' => 'lal', 'Lalb_Chr21g0309881' => 'lal', 'Lj1A5T12' => 'lonja', 'Lj1C148G10' => 'lonja', 'Lj2A93T83' => 'lonja', 'Lj3A738G68' => 'lonja', 'Lj3C966T1' => 'lonja', 'Lj3g0018958' => 'lja', 'Lj3g0021831' => 'lja', 'Lj3g0025443' => 'lja', 'Lj4g0026809' => 'lja', 'Lj5g0012558' => 'lja', 'Lj5g0021586' => 'lja', 'Lsat_1_v5_gn_5_156840' => 'lsa', 'Lsat_1_v5_gn_8_73460' => 'lsa', 'Lsat_1_v5_gn_8_73481' => 'lsa', 'Lsat_1_v5_gn_9_31601' => 'lsa', 'Lsat_1_v5_gn_9_77320' => 'lsa', 'Manes.01G171300' => 'mes', 'Manes.01G171400' => 'mes', 'Manes.01G236100' => 'mes', 'Manes.02G130500' => 'mes', 'Manes.02G130600' => 'mes', 'Manes.03G180200' => 'mes', 'Manes.05G007000' => 'mes', 'Manes.08G084400' => 'mes', 'Manes.09G092600' => 'mes', 'Manes.15G027900' => 'mes', 'MBI04_g40948_MAGBIO' => 'mbi', 'MBI14_g12123_MAGBIO' => 'mbi', 'MBI18_g28915_MAGBIO' => 'mbi', 'MCO09G053' => 'mco', 'MCO11G782' => 'mco', 'MCO15G215' => 'mco', 'MD03G1088500' => 'mdo', 'MD03G1088600' => 'mdo', 'MD04G1130800' => 'mdo', 'MD09G1291700' => 'mdo', 'MD11G1097500' => 'mdo', 'MD11G1097600' => 'mdo', 'MD12G1143900' => 'mdo', 'MD13G1191400' => 'mdo', 'MD16G1191500' => 'mdo', 'Medtr1g085570' => 'mtr', 'Medtr1g104610' => 'mtr', 'Medtr2g097520' => 'mtr', 'Medtr4g021800' => 'mtr', 'Medtr4g021825' => 'mtr', 'Medtr4g064270' => 'mtr', 'Medtr4g064380' => 'mtr', 'Medtr7g062150' => 'mtr', 'MELO3C003138.2' => 'cme', 'MELO3C005187.2' => 'cme', 'MELO3C009252.2' => 'cme', 'MELO3C014481.2' => 'cme', 'MELO3C020616.2' => 'cme', 'MELO3C020617.2' => 'cme', 'MELO3C020618.2' => 'cme', 'Migut.G00328' => 'egut', 'Migut.J00320' => 'egut', 'Migut.L01000' => 'egut', 'Migut.L01953' => 'egut', 'MSTRG.10253' => 'ama', 'MSTRG.19077' => 'ama', 'MSTRG.26780' => 'ama', 'MSTRG.4023' => 'ama', 'MSTRG.5655' => 'ama', 'MSTRG.9992' => 'ama', 'Nitab4.5_0000043g0310' => 'nta', 'Nitab4.5_0000463g0080' => 'nta', 'Nitab4.5_0000705g0170' => 'nta', 'Nitab4.5_0001326g0060' => 'nta', 'Nitab4.5_0001628g0030' => 'nta', 'Nitab4.5_0002103g0110' => 'nta', 'Nitab4.5_0002946g0030' => 'nta', 'Nitab4.5_0004639g0030' => 'nta', 'Nn2g11149' => 'nnu', 'Nn2g13389' => 'nnu', 'Nn4g25326' => 'nnu', 'Nn4g26290' => 'nnu', 'Nn5g29865' => 'nnu', 'Oeu004163.1' => 'oeu', 'Oeu006901.1' => 'oeu', 'Oeu010096.1' => 'oeu', 'Oeu024340.1' => 'oeu', 'Oeu048369.1' => 'oeu', 'Os01g0973000' => 'osa', 'Os03g0273800' => 'osa', 'Os03g0701200' => 'osa', 'Os03g0834050' => 'osa', 'Os07g0634400' => 'osa', 'Peaxi162Scf00092g01414' => 'pax', 'Peaxi162Scf00165g00818' => 'pax', 'Peaxi162Scf00309g00516' => 'pax', 'Peaxi162Scf00774g00218' => 'pax', 'PGR004G1824' => 'pgr', 'PGR004G2606' => 'pgr', 'PGR031G2716' => 'pgr', 'PGR102G2460' => 'pgr', 'PGR142G2599' => 'pgr', 'PGSC0003DMG400000843' => 'stu', 'PGSC0003DMG400008829' => 'stu', 'PGSC0003DMG400030418' => 'stu', 'PGSC0003DMG400031834' => 'stu', 'PGSC0003DMG401028300' => 'stu', 'PGSC0003DMG402028300' => 'stu', 'Phvul.001G219300' => 'pvu', 'Phvul.007G056000' => 'pvu', 'Phvul.007G208000' => 'pvu', 'Phvul.008G119500' => 'pvu', 'Phvul.010G011200' => 'pvu', 'Phvul.010G014800' => 'pvu', 'Phvul.011G062900' => 'pvu', 'Phvul.L007043' => 'pvu', 'Potri.001G242300' => 'ptr', 'Potri.002G185300' => 'ptr', 'Potri.006G086900' => 'ptr', 'Potri.008G151700' => 'ptr', 'Potri.009G033500' => 'ptr', 'Potri.010G089300' => 'ptr', 'Potri.014G110800' => 'ptr', 'Pp3c27_8130' => 'ppa', 'Pp3c6_27410' => 'ppa', 'PRCOL_00001659' => 'pco', 'PRCOL_00001927' => 'pco', 'PRCOL_00003649' => 'pco', 'Prupe.1G011600' => 'ppe', 'Prupe.3G000800' => 'ppe', 'Prupe.3G001100' => 'ppe', 'Prupe.6G072700' => 'ppe', 'Prupe.6G072800' => 'ppe', 'Prupe.6G257300' => 'ppe', 'Prupe.8G033000' => 'ppe', 'Psat0s2633g0080' => 'psa', 'Psat0s3396g0080' => 'psa', 'Psat0s3396g0200' => 'psa', 'Psat3g139080' => 'psa', 'Psat5g285080' => 'psa', 'Psat6g157760' => 'psa', 'Psat6g208440' => 'psa', 'Psat7g215320' => 'psa', 'Psat7g215400' => 'psa', 'Psat7g235600' => 'psa', 'Psat7g235760' => 'psa', 'PSO063G4603' => 'pso', 'PSO210G0182' => 'pso', 'PSO210G0196' => 'pso', 'PSO339G0394' => 'pso', 'PSO339G4127' => 'pso', 'PSO513G0064' => 'pso', 'PSO761G0079' => 'pso', 'QL01p031003' => 'qlo', 'QL01p031078' => 'qlo', 'QL06p003004' => 'qlo', 'QL07p048731' => 'qlo', 'QL09p037427' => 'qlo', 'RcHm_v2.0_Chr3g0466361' => 'rch', 'RcHm_v2.0_Chr3g0485571' => 'rch', 'RcHm_v2.0_Chr4g0416551' => 'rch', 'RcHm_v2.0_Chr5g0065831' => 'rch', 'Rhsim01G0230500' => 'rsi', 'Rhsim05G0194000' => 'rsi', 'Rhsim08G0250400' => 'rsi', 'Sabra02G0131000' => 'sbr', 'Sabra06G0066300' => 'sbr', 'Sabra08G0115500' => 'sbr', 'Sabra09G0023900' => 'sbr', 'Sabra10G0054000' => 'sbr', 'Sabra14G0081500' => 'sbr', 'Sabra16G0147100' => 'sbr', 'SalBow2G2957' => 'sbo', 'SalBow4G3320' => 'sbo', 'SalBow8G1894' => 'sbo', 'Sc07g0007950' => 'sci', 'Sc12g0001360' => 'sci', 'Sc13g0004330' => 'sci', 'Sc20g0005010' => 'sci', 'Sed0000361' => 'sed', 'Sed0001706' => 'sed', 'Sed0002422' => 'sed', 'Sed0004029' => 'sed', 'Sed0004602' => 'sed', 'Sed0004943' => 'sed', 'Sed0008646' => 'sed', 'Sed0023313' => 'sed', 'Sed0024843' => 'sed', 'SEGI_00081' => 'sgi', 'SEGI_00947' => 'sgi', 'SEGI_04046' => 'sgi', 'SEGI_06880' => 'sgi', 'SEGI_09736' => 'sgi', 'SEGI_12741' => 'sgi', 'SEGI_14530' => 'sgi', 'SEGI_20705' => 'sgi', 'SEGI_26088' => 'sgi', 'SEGI_28323' => 'sgi', 'SEGI_33343' => 'sgi', 'SGA_v2.0_scaffold126G33775' => 'sas', 'SGA_v2.0_scaffold2G01337' => 'sas', 'SGA_v2.0_scaffold38G15006' => 'sas', 'SGA_v2.0_scaffold39G15264' => 'sas', 'SGA_v2.0_scaffold453G51880' => 'sas', 'SHI12696' => 'shi', 'SMO367G1096' => 'smo', 'Solyc01g068630.3' => 'sly', 'Solyc05g011880.3' => 'sly', 'Solyc06g076300.3' => 'sly', 'Solyc09g010940.4' => 'sly', 'Solyc09g075890.3' => 'sly', 'Sopen01g030560' => 'spe', 'Sopen05g006630' => 'spe', 'Sopen06g032720' => 'spe', 'Sopen09g005660' => 'spe', 'Sopen09g030690' => 'spe', 'Sp4g14540' => 'spa', 'Sp4g20030' => 'spa', 'Sp5g01320' => 'spa', 'Sp6g21170' => 'spa', 'Sp6g21180' => 'spa', 'Sp6g21190' => 'spa', 'Sp6g40220' => 'spa', 'TAR362G0122' => 'tar', 'TAR362G1338' => 'tar', 'TAR369G0590' => 'tar', 'TAR371G0824' => 'tar', 'TAR622G1429' => 'tar', 'TAR623G0734' => 'tar', 'TAR625G0441' => 'tar', 'TAR629G0976' => 'tar', 'TAR633G1195' => 'tar', 'TAR636G2660' => 'tar', 'THA.LOC104799440' => 'tha', 'THA.LOC104800966' => 'tha', 'THA.LOC104806559' => 'tha', 'THA.LOC104810765' => 'tha', 'THA.LOC104816266' => 'tha', 'THA.LOC104817419' => 'tha', 'THA.LOC104827021' => 'tha', 'Thecc.01G327400' => 'tca', 'Thecc.04G229200' => 'tca', 'Thecc.05G037400' => 'tca', 'Thecc.09G318600' => 'tca', 'Thecc.09G318700' => 'tca', 'Thhalv10006238m.g' => 'esa', 'Thhalv10014321m.g' => 'esa', 'Thhalv10014335m.g' => 'esa', 'Thhalv10015826m.g' => 'esa', 'Thhalv10017107m.g' => 'esa', 'Thhalv10017180m.g' => 'esa', 'Thhalv10029339m.g' => 'esa', 'TPR.G1699' => 'tpr', 'TPR.G23609' => 'tpr', 'TPR.G3081' => 'tpr', 'TPR.G40397' => 'tpr', 'TPR.G5522' => 'tpr', 'TPR.G5618' => 'tpr', 'TPR.G5626' => 'tpr', 'TWI09G1632' => 'twi', 'TWI23G1230' => 'twi', 'TWI53G1064' => 'twi', 'TWI59G0751' => 'twi', 'TWI74G0947' => 'twi', 'TWI77G0337' => 'twi', 'TWI79G1254' => 'twi', 'unitig_0.g2341' => 'ugi', 'unitig_26.g10006' => 'ugi', 'unitig_26.g10008' => 'ugi', 'unitig_26.g9192' => 'ugi', 'vmacro14547' => 'vma', 'vmacro15333' => 'vma', 'vmacro18743' => 'vma', 'vmacro20166' => 'vma', 'VMungo0331G0523' => 'vmu', 'VMungo0331G1202' => 'vmu', 'VMungo0720G1228' => 'vmu', 'VMungo0720G1514' => 'vmu', 'VMungo1080G0169' => 'vmu', 'VMungo1127G1475' => 'vmu', 'VMungo1383G1208' => 'vmu', 'VMungo1383G1698' => 'vmu', 'Zm00001eb012270' => 'zma', 'Zm00001eb054100' => 'zma', 'Zm00001eb063350' => 'zma', 'Zm00001eb328560' => 'zma', 'Zm00001eb342820' => 'zma', 'Zm00001eb362210' => 'zma', 'Zm00001eb397730' => 'zma', 'Zm00001eb399750' => 'zma' ), 'gf_id' => 'HOM05D000959', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000959' ), 'data_identifier' => 'HOM05D000959', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000959', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '622', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p07100' => 'bna', 'A03p11720' => 'bna', 'A05p08300' => 'bna', 'A05p13380' => 'bna', 'A09p54130' => 'bna', 'A10p16690' => 'bna', 'A10p16700' => 'bna', 'A10p33390' => 'bna', 'Aa31LG10G16020' => 'aar', 'Aa31LG1G11810' => 'aar', 'Aa31LG1G11830' => 'aar', 'Aa31LG1G22510' => 'aar', 'Aa31LG5G4890' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5793' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2310' => 'aag', 'Actinidia08499' => 'ach', 'Actinidia11262' => 'ach', 'Actinidia23926' => 'ach', 'Actinidia34420' => 'ach', 'Actinidia36970' => 'ach', 'Ah.02g111220' => 'amhyb', 'Ah.15g097750' => 'amhyb', 'AL4G27500' => 'aly', 'AL6G11470' => 'aly', 'AL8G35950' => 'aly', 'AL8G35960' => 'aly', 'AL8G35970' => 'aly', 'Aqoxy1G00912' => 'aox', 'Aqoxy2G02253' => 'aox', 'Aqoxy2G02411' => 'aox', 'Aqoxy5G00485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BZ66YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K8ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM4FUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6BF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HFV7XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25JBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0YNNV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MAKK6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P70IT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP2Z6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V61LZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YWP64R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3S9AI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7PGHH' => 'arhy', 'AT2G32150' => 'ath', 'AT3G62040' => 'ath', 'AT5G02230' => 'ath', 'AT5G59480' => 'ath', 'AT5G59490' => 'ath', 'ATR0332G060' => 'atr', 'ATR0559G190' => 'atr', 'ATR0693G294' => 'atr', 'Atru.chr3.3975' => 'acertr', 'Atru.chr3.3976' => 'acertr', 'Atru.chr3.3977' => 'acertr', 'Atru.chr4.2498' => 'acertr', 'Atru.chr5.838' => 'acertr', 'Atru.chr8.1990' => 'acertr', 'Atru.chr8.1991' => 'acertr', 'Atru.chr8.1992' => 'acertr', 'AUR62001759' => 'cqu', 'AUR62009545' => 'cqu', 'AUR62010474' => 'cqu', 'AUR62025820' => 'cqu', 'AUR62030422' => 'cqu', 'AUR62033605' => 'cqu', 'AUR62038615' => 'cqu', 'AUR62041347' => 'cqu', 'BcaB01g04574' => 'bca', 'BcaB02g09263' => 'bca', 'BcaB02g10453' => 'bca', 'BcaB05g22513' => 'bca', 'BcaB08g36253' => 'bca', 'BcaB08g36254' => 'bca', 'BcaC01g06519' => 'bca', 'BcaC02g11889' => 'bca', 'BcaC03g14010' => 'bca', 'BcaC03g18439' => 'bca', 'BcaC04g19765' => 'bca', 'BcaC09g48432' => 'bca', 'BcaNung07302' => 'bca', 'BolC2t06040H' => 'bol', 'BolC2t07346H' => 'bol', 'BolC3t13817H' => 'bol', 'BolC4t22625H' => 'bol', 'BolC4t23297H' => 'bol', 'BolC8t51278H' => 'bol', 'BolC9t58050H' => 'bol', 'BolC9t58051H' => 'bol', 'BolC9t60163H' => 'bol', 'BraA02t04712Z' => 'bra', 'BraA02t05791Z' => 'bra', 'BraA03t10483Z' => 'bra', 'BraA05t19795Z' => 'bra', 'BraA05t20276Z' => 'bra', 'BraA09t40827Z' => 'bra', 'BraA10t43750Z' => 'bra', 'BraA10t43751Z' => 'bra', 'BraA10t45370Z' => 'bra', 'C02p00400' => 'bna', 'C02p12460' => 'bna', 'C03p13680' => 'bna', 'C04p10270' => 'bna', 'C04p17500' => 'bna', 'C08p37010' => 'bna', 'C09p51880' => 'bna', 'C09p51890' => 'bna', 'C09p74300' => 'bna', 'CAN.G179.26' => 'can', 'CAN.G3384.1' => 'can', 'CAN.G394.68' => 'can', 'CAN.G907.13' => 'can', 'CANSAT11G0012' => 'cansat', 'CANSAT25G1586' => 'cansat', 'CANSAT35G0735' => 'cansat', 'CANSAT54G0556' => 'cansat', 'CANSAT64G0356' => 'cansat', 'CANSAT78G2042' => 'cansat', 'CARHR125920' => 'chi', 'CARHR131910' => 'chi', 'CARHR172390' => 'chi', 'CARHR211140' => 'chi', 'CARHR285850' => 'chi', 'CARHR285860' => 'chi', 'Carub.0004s1347' => 'cru', 'Carub.0004s1960' => 'cru', 'Carub.0005s2880' => 'cru', 'Carub.0006s0107' => 'cru', 'Carub.0008s2015' => 'cru', 'Carub.0008s2016' => 'cru', 'Carub.0008s2017' => 'cru', 'Ca_01315_v3' => 'car', 'Ca_05063_v3' => 'car', 'Ca_10231_v3' => 'car', 'Ca_10913_v3' => 'car', 'Ca_19156_v3' => 'car', 'Ca_23644_v3' => 'car', 'Ca_26735_v3' => 'car', 'Cc01_g13130' => 'ccan', 'Cc02_g21690' => 'ccan', 'Cc03_g03600' => 'ccan', 'Cc06_g02510' => 'ccan', 'CDE02G1265' => 'cde', 'CDE05G0415' => 'cde', 'CDE08G1082' => 'cde', 'Cfa005780' => 'cfa', 'Cfa011522' => 'cfa', 'Cfa011523' => 'cfa', 'Cfa015627' => 'cfa', 'Cfa017359' => 'cfa', 'Ciclev10005687m.g' => 'ccl', 'Ciclev10012173m.g' => 'ccl', 'Ciclev10021621m.g' => 'ccl', 'Ciclev10028968m.g' => 'ccl', 'Ciclev10029907m.g' => 'ccl', 'CiPaw.01G164800' => 'cil', 'CiPaw.07G083700' => 'cil', 'CiPaw.07G127000' => 'cil', 'CiPaw.07G136900' => 'cil', 'CiPaw.08G081700' => 'cil', 'CiPaw.09G194600' => 'cil', 'CiPaw.10G146500' => 'cil', 'CiPaw.13G091500' => 'cil', 'CiPaw.13G091600' => 'cil', 'ClCG00G003390' => 'cla', 'ClCG01G007220' => 'cla', 'ClCG03G001370' => 'cla', 'ClCG04G008100' => 'cla', 'ClCG06G006110' => 'cla', 'ClCG06G006130' => 'cla', 'ClCG10G021210' => 'cla', 'COL.COLO4_07648' => 'col', 'COL.COLO4_07650' => 'col', 'COL.COLO4_07651' => 'col', 'COL.COLO4_14780' => 'col', 'COL.COLO4_18546' => 'col', 'COL.COLO4_18547' => 'col', 'COL.COLO4_23103' => 'col', 'COL.COLO4_30419' => 'col', 'COL.COLO4_34232' => 'col', 'Cpa.g.sc169.20' => 'cpa', 'Cpa.g.sc57.45' => 'cpa', 'Cpa.g.sc58.124' => 'cpa', 'Cpa.g.sc58.125' => 'cpa', 'Cpa.g.sc81.118' => 'cpa', 'Cpa.g.sc81.119' => 'cpa', 'Cre12.g524700' => 'cre', 'CsaV3_1G034430' => 'csa', 'CsaV3_1G034440' => 'csa', 'CsaV3_1G034450' => 'csa', 'CsaV3_3G034830' => 'csa', 'CsaV3_4G025090' => 'csa', 'CsaV3_5G018660' => 'csa', 'CsaV3_6G038160' => 'csa', 'CSS0003447' => 'camsi', 'CSS0017840' => 'camsi', 'CSS0019260' => 'camsi', 'CSS0040375' => 'camsi', 'CSS0042533' => 'camsi', 'DCAR_005960' => 'dca', 'DCAR_012104' => 'dca', 'DCAR_012105' => 'dca', 'DCAR_012293' => 'dca', 'DCAR_015632' => 'dca', 'DCAR_024602' => 'dca', 'DCAR_028752' => 'dca', 'Dinv06261' => 'din', 'Dinv13982' => 'din', 'Dinv17029' => 'din', 'Dinv18463' => 'din', 'Dinv33181' => 'din', 'Dinv35585' => 'din', 'Dinv37161' => 'din', 'Dinv42977' => 'din', 'Dinv43122' => 'din', 'Dinv44517' => 'din', 'Duzib093G0256' => 'dzi', 'Duzib106G1254' => 'dzi', 'Duzib128G1789' => 'dzi', 'Duzib133G0633' => 'dzi', 'Duzib138G0510' => 'dzi', 'Duzib150G1084' => 'dzi', 'Duzib168G0488' => 'dzi', 'Duzib168G1523' => 'dzi', 'Duzib170G0133' => 'dzi', 'ECA234G1433' => 'eca', 'ECA236G1432' => 'eca', 'ECA236G2256' => 'eca', 'ECA236G2365' => 'eca', 'ECA236G4830' => 'eca', 'ECA248G1505' => 'eca', 'EL10Ac3g06431' => 'bvu', 'EL10Ac5g12577' => 'bvu', 'EL10Ac6g13533' => 'bvu', 'EL10Ac7g16045' => 'bvu', 'Eucgr.A01281' => 'egr', 'Eucgr.B02326' => 'egr', 'Eucgr.H03532' => 'egr', 'Eucgr.K00553' => 'egr', 'Eucgr.K03116' => 'egr', 'FAN02G3963' => 'fan', 'FAN05G0438' => 'fan', 'FAN09G2434' => 'fan', 'FAN12G3984' => 'fan', 'FAN14G0798' => 'fan', 'FAN17G0652' => 'fan', 'FAN19G1988' => 'fan', 'FAN22G0632' => 'fan', 'FAN23G0387' => 'fan', 'FAN26G1323' => 'fan', 'FAN28G0666' => 'fan', 'FvH4_1g26080' => 'fve', 'FvH4_3g36780' => 'fve', 'FvH4_4g15270' => 'fve', 'FvH4_6g13490' => 'fve', 'Glyma.01G098700' => 'gma', 'Glyma.03G065900' => 'gma', 'Glyma.03G073754' => 'gma', 'Glyma.03G073758' => 'gma', 'Glyma.03G083200' => 'gma', 'Glyma.03G225500' => 'gma', 'Glyma.05G037766' => 'gma', 'Glyma.07G133500' => 'gma', 'Glyma.10G139400' => 'gma', 'Glyma.10G248900' => 'gma', 'Glyma.11G137800' => 'gma', 'Glyma.12G061300' => 'gma', 'Glyma.13G337900' => 'gma', 'Glyma.15G036600' => 'gma', 'Glyma.18G182800' => 'gma', 'Glyma.19G222500' => 'gma', 'Glyma.20G144800' => 'gma', 'Gohir.A01G222000' => 'ghi', 'Gohir.A03G044000' => 'ghi', 'Gohir.A03G044100' => 'ghi', 'Gohir.A04G083100' => 'ghi', 'Gohir.A07G127200' => 'ghi', 'Gohir.A07G132400' => 'ghi', 'Gohir.A08G000700' => 'ghi', 'Gohir.A11G327300' => 'ghi', 'Gohir.D01G211500' => 'ghi', 'Gohir.D03G123400' => 'ghi', 'Gohir.D03G123500' => 'ghi', 'Gohir.D04G121800' => 'ghi', 'Gohir.D07G131500' => 'ghi', 'Gohir.D07G136600' => 'ghi', 'Gohir.D08G011600' => 'ghi', 'Gohir.D11G346200' => 'ghi', 'Gorai.001G142800' => 'gra', 'Gorai.001G148700' => 'gra', 'Gorai.002G257300' => 'gra', 'Gorai.003G130000' => 'gra', 'Gorai.003G130100' => 'gra', 'Gorai.004G005300' => 'gra', 'Gorai.007G376500' => 'gra', 'Gorai.012G104700' => 'gra', 'GSVIVG01017946001' => 'vvi', 'GSVIVG01024928001' => 'vvi', 'GSVIVG01028227001' => 'vvi', 'GSVIVG01034151001' => 'vvi', 'HanXRQChr05g0135031' => 'han', 'HanXRQChr05g0135041' => 'han', 'HanXRQChr05g0140021' => 'han', 'HanXRQChr06g0178981' => 'han', 'HanXRQChr07g0188251' => 'han', 'HanXRQChr08g0235311' => 'han', 'HanXRQChr09g0271011' => 'han', 'HanXRQChr10g0293321' => 'han', 'HanXRQChr13g0388171' => 'han', 'Haze_00916' => 'cav', 'Haze_05063' => 'cav', 'Haze_20814' => 'cav', 'Haze_24128' => 'cav', 'Hma1.2p1_0745F.1_g212010' => 'hma', 'Hma1.2p1_0757F.1_g213260' => 'hma', 'Hma1.2p1_0936F.1_g238840' => 'hma', 'Hma1.2p1_1735F.1_g299890' => 'hma', 'Hma1.2p1_1861F.1_g305685' => 'hma', 'HPP92_003397' => 'vpl', 'HPP92_012597' => 'vpl', 'HPP92_015520' => 'vpl', 'HPP92_015539' => 'vpl', 'HPP92_020373' => 'vpl', 'Hund04938' => 'sun', 'Hund10677' => 'sun', 'Hund11033' => 'sun', 'Hund12155' => 'sun', 'Lalb_Chr01g0022551' => 'lal', 'Lalb_Chr03g0042341' => 'lal', 'Lalb_Chr07g0192931' => 'lal', 'Lalb_Chr12g0209551' => 'lal', 'Lalb_Chr19g0125251' => 'lal', 'Lalb_Chr19g0137891' => 'lal', 'Lalb_Chr21g0304641' => 'lal', 'Lalb_Chr21g0309881' => 'lal', 'Lj1A5T12' => 'lonja', 'Lj1C148G10' => 'lonja', 'Lj2A93T83' => 'lonja', 'Lj3A738G68' => 'lonja', 'Lj3C966T1' => 'lonja', 'Lj3g0018958' => 'lja', 'Lj3g0021831' => 'lja', 'Lj3g0025443' => 'lja', 'Lj4g0026809' => 'lja', 'Lj5g0012558' => 'lja', 'Lj5g0021586' => 'lja', 'Lsat_1_v5_gn_5_156840' => 'lsa', 'Lsat_1_v5_gn_8_73460' => 'lsa', 'Lsat_1_v5_gn_8_73481' => 'lsa', 'Lsat_1_v5_gn_9_31601' => 'lsa', 'Lsat_1_v5_gn_9_77320' => 'lsa', 'Manes.01G171300' => 'mes', 'Manes.01G171400' => 'mes', 'Manes.01G236100' => 'mes', 'Manes.02G130500' => 'mes', 'Manes.02G130600' => 'mes', 'Manes.03G180200' => 'mes', 'Manes.05G007000' => 'mes', 'Manes.08G084400' => 'mes', 'Manes.09G092600' => 'mes', 'Manes.15G027900' => 'mes', 'MBI04_g40948_MAGBIO' => 'mbi', 'MBI14_g12123_MAGBIO' => 'mbi', 'MBI18_g28915_MAGBIO' => 'mbi', 'MCO09G053' => 'mco', 'MCO11G782' => 'mco', 'MCO15G215' => 'mco', 'MD03G1088500' => 'mdo', 'MD03G1088600' => 'mdo', 'MD04G1130800' => 'mdo', 'MD09G1291700' => 'mdo', 'MD11G1097500' => 'mdo', 'MD11G1097600' => 'mdo', 'MD12G1143900' => 'mdo', 'MD13G1191400' => 'mdo', 'MD16G1191500' => 'mdo', 'Medtr1g085570' => 'mtr', 'Medtr1g104610' => 'mtr', 'Medtr2g097520' => 'mtr', 'Medtr4g021800' => 'mtr', 'Medtr4g021825' => 'mtr', 'Medtr4g064270' => 'mtr', 'Medtr4g064380' => 'mtr', 'Medtr7g062150' => 'mtr', 'MELO3C003138.2' => 'cme', 'MELO3C005187.2' => 'cme', 'MELO3C009252.2' => 'cme', 'MELO3C014481.2' => 'cme', 'MELO3C020616.2' => 'cme', 'MELO3C020617.2' => 'cme', 'MELO3C020618.2' => 'cme', 'Migut.G00328' => 'egut', 'Migut.J00320' => 'egut', 'Migut.L01000' => 'egut', 'Migut.L01953' => 'egut', 'MSTRG.10253' => 'ama', 'MSTRG.19077' => 'ama', 'MSTRG.26780' => 'ama', 'MSTRG.4023' => 'ama', 'MSTRG.5655' => 'ama', 'MSTRG.9992' => 'ama', 'Nitab4.5_0000043g0310' => 'nta', 'Nitab4.5_0000463g0080' => 'nta', 'Nitab4.5_0000705g0170' => 'nta', 'Nitab4.5_0001326g0060' => 'nta', 'Nitab4.5_0001628g0030' => 'nta', 'Nitab4.5_0002103g0110' => 'nta', 'Nitab4.5_0002946g0030' => 'nta', 'Nitab4.5_0004639g0030' => 'nta', 'Nn2g11149' => 'nnu', 'Nn2g13389' => 'nnu', 'Nn4g25326' => 'nnu', 'Nn4g26290' => 'nnu', 'Nn5g29865' => 'nnu', 'Oeu004163.1' => 'oeu', 'Oeu006901.1' => 'oeu', 'Oeu010096.1' => 'oeu', 'Oeu024340.1' => 'oeu', 'Oeu048369.1' => 'oeu', 'Os01g0973000' => 'osa', 'Os03g0273800' => 'osa', 'Os03g0701200' => 'osa', 'Os03g0834050' => 'osa', 'Os07g0634400' => 'osa', 'Peaxi162Scf00092g01414' => 'pax', 'Peaxi162Scf00165g00818' => 'pax', 'Peaxi162Scf00309g00516' => 'pax', 'Peaxi162Scf00774g00218' => 'pax', 'PGR004G1824' => 'pgr', 'PGR004G2606' => 'pgr', 'PGR031G2716' => 'pgr', 'PGR102G2460' => 'pgr', 'PGR142G2599' => 'pgr', 'PGSC0003DMG400000843' => 'stu', 'PGSC0003DMG400008829' => 'stu', 'PGSC0003DMG400030418' => 'stu', 'PGSC0003DMG400031834' => 'stu', 'PGSC0003DMG401028300' => 'stu', 'PGSC0003DMG402028300' => 'stu', 'Phvul.001G219300' => 'pvu', 'Phvul.007G056000' => 'pvu', 'Phvul.007G208000' => 'pvu', 'Phvul.008G119500' => 'pvu', 'Phvul.010G011200' => 'pvu', 'Phvul.010G014800' => 'pvu', 'Phvul.011G062900' => 'pvu', 'Phvul.L007043' => 'pvu', 'Potri.001G242300' => 'ptr', 'Potri.002G185300' => 'ptr', 'Potri.006G086900' => 'ptr', 'Potri.008G151700' => 'ptr', 'Potri.009G033500' => 'ptr', 'Potri.010G089300' => 'ptr', 'Potri.014G110800' => 'ptr', 'Pp3c27_8130' => 'ppa', 'Pp3c6_27410' => 'ppa', 'PRCOL_00001659' => 'pco', 'PRCOL_00001927' => 'pco', 'PRCOL_00003649' => 'pco', 'Prupe.1G011600' => 'ppe', 'Prupe.3G000800' => 'ppe', 'Prupe.3G001100' => 'ppe', 'Prupe.6G072700' => 'ppe', 'Prupe.6G072800' => 'ppe', 'Prupe.6G257300' => 'ppe', 'Prupe.8G033000' => 'ppe', 'Psat0s2633g0080' => 'psa', 'Psat0s3396g0080' => 'psa', 'Psat0s3396g0200' => 'psa', 'Psat3g139080' => 'psa', 'Psat5g285080' => 'psa', 'Psat6g157760' => 'psa', 'Psat6g208440' => 'psa', 'Psat7g215320' => 'psa', 'Psat7g215400' => 'psa', 'Psat7g235600' => 'psa', 'Psat7g235760' => 'psa', 'PSO063G4603' => 'pso', 'PSO210G0182' => 'pso', 'PSO210G0196' => 'pso', 'PSO339G0394' => 'pso', 'PSO339G4127' => 'pso', 'PSO513G0064' => 'pso', 'PSO761G0079' => 'pso', 'QL01p031003' => 'qlo', 'QL01p031078' => 'qlo', 'QL06p003004' => 'qlo', 'QL07p048731' => 'qlo', 'QL09p037427' => 'qlo', 'RcHm_v2.0_Chr3g0466361' => 'rch', 'RcHm_v2.0_Chr3g0485571' => 'rch', 'RcHm_v2.0_Chr4g0416551' => 'rch', 'RcHm_v2.0_Chr5g0065831' => 'rch', 'Rhsim01G0230500' => 'rsi', 'Rhsim05G0194000' => 'rsi', 'Rhsim08G0250400' => 'rsi', 'Sabra02G0131000' => 'sbr', 'Sabra06G0066300' => 'sbr', 'Sabra08G0115500' => 'sbr', 'Sabra09G0023900' => 'sbr', 'Sabra10G0054000' => 'sbr', 'Sabra14G0081500' => 'sbr', 'Sabra16G0147100' => 'sbr', 'SalBow2G2957' => 'sbo', 'SalBow4G3320' => 'sbo', 'SalBow8G1894' => 'sbo', 'Sc07g0007950' => 'sci', 'Sc12g0001360' => 'sci', 'Sc13g0004330' => 'sci', 'Sc20g0005010' => 'sci', 'Sed0000361' => 'sed', 'Sed0001706' => 'sed', 'Sed0002422' => 'sed', 'Sed0004029' => 'sed', 'Sed0004602' => 'sed', 'Sed0004943' => 'sed', 'Sed0008646' => 'sed', 'Sed0023313' => 'sed', 'Sed0024843' => 'sed', 'SEGI_00081' => 'sgi', 'SEGI_00947' => 'sgi', 'SEGI_04046' => 'sgi', 'SEGI_06880' => 'sgi', 'SEGI_09736' => 'sgi', 'SEGI_12741' => 'sgi', 'SEGI_14530' => 'sgi', 'SEGI_20705' => 'sgi', 'SEGI_26088' => 'sgi', 'SEGI_28323' => 'sgi', 'SEGI_33343' => 'sgi', 'SGA_v2.0_scaffold126G33775' => 'sas', 'SGA_v2.0_scaffold2G01337' => 'sas', 'SGA_v2.0_scaffold38G15006' => 'sas', 'SGA_v2.0_scaffold39G15264' => 'sas', 'SGA_v2.0_scaffold453G51880' => 'sas', 'SHI12696' => 'shi', 'SMO367G1096' => 'smo', 'Solyc01g068630.3' => 'sly', 'Solyc05g011880.3' => 'sly', 'Solyc06g076300.3' => 'sly', 'Solyc09g010940.4' => 'sly', 'Solyc09g075890.3' => 'sly', 'Sopen01g030560' => 'spe', 'Sopen05g006630' => 'spe', 'Sopen06g032720' => 'spe', 'Sopen09g005660' => 'spe', 'Sopen09g030690' => 'spe', 'Sp4g14540' => 'spa', 'Sp4g20030' => 'spa', 'Sp5g01320' => 'spa', 'Sp6g21170' => 'spa', 'Sp6g21180' => 'spa', 'Sp6g21190' => 'spa', 'Sp6g40220' => 'spa', 'TAR362G0122' => 'tar', 'TAR362G1338' => 'tar', 'TAR369G0590' => 'tar', 'TAR371G0824' => 'tar', 'TAR622G1429' => 'tar', 'TAR623G0734' => 'tar', 'TAR625G0441' => 'tar', 'TAR629G0976' => 'tar', 'TAR633G1195' => 'tar', 'TAR636G2660' => 'tar', 'THA.LOC104799440' => 'tha', 'THA.LOC104800966' => 'tha', 'THA.LOC104806559' => 'tha', 'THA.LOC104810765' => 'tha', 'THA.LOC104816266' => 'tha', 'THA.LOC104817419' => 'tha', 'THA.LOC104827021' => 'tha', 'Thecc.01G327400' => 'tca', 'Thecc.04G229200' => 'tca', 'Thecc.05G037400' => 'tca', 'Thecc.09G318600' => 'tca', 'Thecc.09G318700' => 'tca', 'Thhalv10006238m.g' => 'esa', 'Thhalv10014321m.g' => 'esa', 'Thhalv10014335m.g' => 'esa', 'Thhalv10015826m.g' => 'esa', 'Thhalv10017107m.g' => 'esa', 'Thhalv10017180m.g' => 'esa', 'Thhalv10029339m.g' => 'esa', 'TPR.G1699' => 'tpr', 'TPR.G23609' => 'tpr', 'TPR.G3081' => 'tpr', 'TPR.G40397' => 'tpr', 'TPR.G5522' => 'tpr', 'TPR.G5618' => 'tpr', 'TPR.G5626' => 'tpr', 'TWI09G1632' => 'twi', 'TWI23G1230' => 'twi', 'TWI53G1064' => 'twi', 'TWI59G0751' => 'twi', 'TWI74G0947' => 'twi', 'TWI77G0337' => 'twi', 'TWI79G1254' => 'twi', 'unitig_0.g2341' => 'ugi', 'unitig_26.g10006' => 'ugi', 'unitig_26.g10008' => 'ugi', 'unitig_26.g9192' => 'ugi', 'vmacro14547' => 'vma', 'vmacro15333' => 'vma', 'vmacro18743' => 'vma', 'vmacro20166' => 'vma', 'VMungo0331G0523' => 'vmu', 'VMungo0331G1202' => 'vmu', 'VMungo0720G1228' => 'vmu', 'VMungo0720G1514' => 'vmu', 'VMungo1080G0169' => 'vmu', 'VMungo1127G1475' => 'vmu', 'VMungo1383G1208' => 'vmu', 'VMungo1383G1698' => 'vmu', 'Zm00001eb012270' => 'zma', 'Zm00001eb054100' => 'zma', 'Zm00001eb063350' => 'zma', 'Zm00001eb328560' => 'zma', 'Zm00001eb342820' => 'zma', 'Zm00001eb362210' => 'zma', 'Zm00001eb397730' => 'zma', 'Zm00001eb399750' => 'zma' ) $gf_id = 'HOM05D000959' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000959' ) $data_identifier = 'HOM05D000959' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 5, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 5, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 10, 'mbi' => (int) 3, 'mco' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 2, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 3, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 11, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399750' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000959', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '622', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p07100' => 'bna', 'A03p11720' => 'bna', 'A05p08300' => 'bna', 'A05p13380' => 'bna', 'A09p54130' => 'bna', 'A10p16690' => 'bna', 'A10p16700' => 'bna', 'A10p33390' => 'bna', 'Aa31LG10G16020' => 'aar', 'Aa31LG1G11810' => 'aar', 'Aa31LG1G11830' => 'aar', 'Aa31LG1G22510' => 'aar', 'Aa31LG5G4890' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5793' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2310' => 'aag', 'Actinidia08499' => 'ach', 'Actinidia11262' => 'ach', 'Actinidia23926' => 'ach', 'Actinidia34420' => 'ach', 'Actinidia36970' => 'ach', 'Ah.02g111220' => 'amhyb', 'Ah.15g097750' => 'amhyb', 'AL4G27500' => 'aly', 'AL6G11470' => 'aly', 'AL8G35950' => 'aly', 'AL8G35960' => 'aly', 'AL8G35970' => 'aly', 'Aqoxy1G00912' => 'aox', 'Aqoxy2G02253' => 'aox', 'Aqoxy2G02411' => 'aox', 'Aqoxy5G00485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BZ66YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K8ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM4FUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6BF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HFV7XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25JBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0YNNV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MAKK6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P70IT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP2Z6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V61LZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YWP64R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3S9AI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7PGHH' => 'arhy', 'AT2G32150' => 'ath', 'AT3G62040' => 'ath', 'AT5G02230' => 'ath', 'AT5G59480' => 'ath', 'AT5G59490' => 'ath', 'ATR0332G060' => 'atr', 'ATR0559G190' => 'atr', 'ATR0693G294' => 'atr', 'Atru.chr3.3975' => 'acertr', 'Atru.chr3.3976' => 'acertr', 'Atru.chr3.3977' => 'acertr', 'Atru.chr4.2498' => 'acertr', 'Atru.chr5.838' => 'acertr', 'Atru.chr8.1990' => 'acertr', 'Atru.chr8.1991' => 'acertr', 'Atru.chr8.1992' => 'acertr', 'AUR62001759' => 'cqu', 'AUR62009545' => 'cqu', 'AUR62010474' => 'cqu', 'AUR62025820' => 'cqu', 'AUR62030422' => 'cqu', 'AUR62033605' => 'cqu', 'AUR62038615' => 'cqu', 'AUR62041347' => 'cqu', 'BcaB01g04574' => 'bca', 'BcaB02g09263' => 'bca', 'BcaB02g10453' => 'bca', 'BcaB05g22513' => 'bca', 'BcaB08g36253' => 'bca', 'BcaB08g36254' => 'bca', 'BcaC01g06519' => 'bca', 'BcaC02g11889' => 'bca', 'BcaC03g14010' => 'bca', 'BcaC03g18439' => 'bca', 'BcaC04g19765' => 'bca', 'BcaC09g48432' => 'bca', 'BcaNung07302' => 'bca', 'BolC2t06040H' => 'bol', 'BolC2t07346H' => 'bol', 'BolC3t13817H' => 'bol', 'BolC4t22625H' => 'bol', 'BolC4t23297H' => 'bol', 'BolC8t51278H' => 'bol', 'BolC9t58050H' => 'bol', 'BolC9t58051H' => 'bol', 'BolC9t60163H' => 'bol', 'BraA02t04712Z' => 'bra', 'BraA02t05791Z' => 'bra', 'BraA03t10483Z' => 'bra', 'BraA05t19795Z' => 'bra', 'BraA05t20276Z' => 'bra', 'BraA09t40827Z' => 'bra', 'BraA10t43750Z' => 'bra', 'BraA10t43751Z' => 'bra', 'BraA10t45370Z' => 'bra', 'C02p00400' => 'bna', 'C02p12460' => 'bna', 'C03p13680' => 'bna', 'C04p10270' => 'bna', 'C04p17500' => 'bna', 'C08p37010' => 'bna', 'C09p51880' => 'bna', 'C09p51890' => 'bna', 'C09p74300' => 'bna', 'CAN.G179.26' => 'can', 'CAN.G3384.1' => 'can', 'CAN.G394.68' => 'can', 'CAN.G907.13' => 'can', 'CANSAT11G0012' => 'cansat', 'CANSAT25G1586' => 'cansat', 'CANSAT35G0735' => 'cansat', 'CANSAT54G0556' => 'cansat', 'CANSAT64G0356' => 'cansat', 'CANSAT78G2042' => 'cansat', 'CARHR125920' => 'chi', 'CARHR131910' => 'chi', 'CARHR172390' => 'chi', 'CARHR211140' => 'chi', 'CARHR285850' => 'chi', 'CARHR285860' => 'chi', 'Carub.0004s1347' => 'cru', 'Carub.0004s1960' => 'cru', 'Carub.0005s2880' => 'cru', 'Carub.0006s0107' => 'cru', 'Carub.0008s2015' => 'cru', 'Carub.0008s2016' => 'cru', 'Carub.0008s2017' => 'cru', 'Ca_01315_v3' => 'car', 'Ca_05063_v3' => 'car', 'Ca_10231_v3' => 'car', 'Ca_10913_v3' => 'car', 'Ca_19156_v3' => 'car', 'Ca_23644_v3' => 'car', 'Ca_26735_v3' => 'car', 'Cc01_g13130' => 'ccan', 'Cc02_g21690' => 'ccan', 'Cc03_g03600' => 'ccan', 'Cc06_g02510' => 'ccan', 'CDE02G1265' => 'cde', 'CDE05G0415' => 'cde', 'CDE08G1082' => 'cde', 'Cfa005780' => 'cfa', 'Cfa011522' => 'cfa', 'Cfa011523' => 'cfa', 'Cfa015627' => 'cfa', 'Cfa017359' => 'cfa', 'Ciclev10005687m.g' => 'ccl', 'Ciclev10012173m.g' => 'ccl', 'Ciclev10021621m.g' => 'ccl', 'Ciclev10028968m.g' => 'ccl', 'Ciclev10029907m.g' => 'ccl', 'CiPaw.01G164800' => 'cil', 'CiPaw.07G083700' => 'cil', 'CiPaw.07G127000' => 'cil', 'CiPaw.07G136900' => 'cil', 'CiPaw.08G081700' => 'cil', 'CiPaw.09G194600' => 'cil', 'CiPaw.10G146500' => 'cil', 'CiPaw.13G091500' => 'cil', 'CiPaw.13G091600' => 'cil', 'ClCG00G003390' => 'cla', 'ClCG01G007220' => 'cla', 'ClCG03G001370' => 'cla', 'ClCG04G008100' => 'cla', 'ClCG06G006110' => 'cla', 'ClCG06G006130' => 'cla', 'ClCG10G021210' => 'cla', 'COL.COLO4_07648' => 'col', 'COL.COLO4_07650' => 'col', 'COL.COLO4_07651' => 'col', 'COL.COLO4_14780' => 'col', 'COL.COLO4_18546' => 'col', 'COL.COLO4_18547' => 'col', 'COL.COLO4_23103' => 'col', 'COL.COLO4_30419' => 'col', 'COL.COLO4_34232' => 'col', 'Cpa.g.sc169.20' => 'cpa', 'Cpa.g.sc57.45' => 'cpa', 'Cpa.g.sc58.124' => 'cpa', 'Cpa.g.sc58.125' => 'cpa', 'Cpa.g.sc81.118' => 'cpa', 'Cpa.g.sc81.119' => 'cpa', 'Cre12.g524700' => 'cre', 'CsaV3_1G034430' => 'csa', 'CsaV3_1G034440' => 'csa', 'CsaV3_1G034450' => 'csa', 'CsaV3_3G034830' => 'csa', 'CsaV3_4G025090' => 'csa', 'CsaV3_5G018660' => 'csa', 'CsaV3_6G038160' => 'csa', 'CSS0003447' => 'camsi', 'CSS0017840' => 'camsi', 'CSS0019260' => 'camsi', 'CSS0040375' => 'camsi', 'CSS0042533' => 'camsi', 'DCAR_005960' => 'dca', 'DCAR_012104' => 'dca', 'DCAR_012105' => 'dca', 'DCAR_012293' => 'dca', 'DCAR_015632' => 'dca', 'DCAR_024602' => 'dca', 'DCAR_028752' => 'dca', 'Dinv06261' => 'din', 'Dinv13982' => 'din', 'Dinv17029' => 'din', 'Dinv18463' => 'din', 'Dinv33181' => 'din', 'Dinv35585' => 'din', 'Dinv37161' => 'din', 'Dinv42977' => 'din', 'Dinv43122' => 'din', 'Dinv44517' => 'din', 'Duzib093G0256' => 'dzi', 'Duzib106G1254' => 'dzi', 'Duzib128G1789' => 'dzi', 'Duzib133G0633' => 'dzi', 'Duzib138G0510' => 'dzi', 'Duzib150G1084' => 'dzi', 'Duzib168G0488' => 'dzi', 'Duzib168G1523' => 'dzi', 'Duzib170G0133' => 'dzi', 'ECA234G1433' => 'eca', 'ECA236G1432' => 'eca', 'ECA236G2256' => 'eca', 'ECA236G2365' => 'eca', 'ECA236G4830' => 'eca', 'ECA248G1505' => 'eca', 'EL10Ac3g06431' => 'bvu', 'EL10Ac5g12577' => 'bvu', 'EL10Ac6g13533' => 'bvu', 'EL10Ac7g16045' => 'bvu', 'Eucgr.A01281' => 'egr', 'Eucgr.B02326' => 'egr', 'Eucgr.H03532' => 'egr', 'Eucgr.K00553' => 'egr', 'Eucgr.K03116' => 'egr', 'FAN02G3963' => 'fan', 'FAN05G0438' => 'fan', 'FAN09G2434' => 'fan', 'FAN12G3984' => 'fan', 'FAN14G0798' => 'fan', 'FAN17G0652' => 'fan', 'FAN19G1988' => 'fan', 'FAN22G0632' => 'fan', 'FAN23G0387' => 'fan', 'FAN26G1323' => 'fan', 'FAN28G0666' => 'fan', 'FvH4_1g26080' => 'fve', 'FvH4_3g36780' => 'fve', 'FvH4_4g15270' => 'fve', 'FvH4_6g13490' => 'fve', 'Glyma.01G098700' => 'gma', 'Glyma.03G065900' => 'gma', 'Glyma.03G073754' => 'gma', 'Glyma.03G073758' => 'gma', 'Glyma.03G083200' => 'gma', 'Glyma.03G225500' => 'gma', 'Glyma.05G037766' => 'gma', 'Glyma.07G133500' => 'gma', 'Glyma.10G139400' => 'gma', 'Glyma.10G248900' => 'gma', 'Glyma.11G137800' => 'gma', 'Glyma.12G061300' => 'gma', 'Glyma.13G337900' => 'gma', 'Glyma.15G036600' => 'gma', 'Glyma.18G182800' => 'gma', 'Glyma.19G222500' => 'gma', 'Glyma.20G144800' => 'gma', 'Gohir.A01G222000' => 'ghi', 'Gohir.A03G044000' => 'ghi', 'Gohir.A03G044100' => 'ghi', 'Gohir.A04G083100' => 'ghi', 'Gohir.A07G127200' => 'ghi', 'Gohir.A07G132400' => 'ghi', 'Gohir.A08G000700' => 'ghi', 'Gohir.A11G327300' => 'ghi', 'Gohir.D01G211500' => 'ghi', 'Gohir.D03G123400' => 'ghi', 'Gohir.D03G123500' => 'ghi', 'Gohir.D04G121800' => 'ghi', 'Gohir.D07G131500' => 'ghi', 'Gohir.D07G136600' => 'ghi', 'Gohir.D08G011600' => 'ghi', 'Gohir.D11G346200' => 'ghi', 'Gorai.001G142800' => 'gra', 'Gorai.001G148700' => 'gra', 'Gorai.002G257300' => 'gra', 'Gorai.003G130000' => 'gra', 'Gorai.003G130100' => 'gra', 'Gorai.004G005300' => 'gra', 'Gorai.007G376500' => 'gra', 'Gorai.012G104700' => 'gra', 'GSVIVG01017946001' => 'vvi', 'GSVIVG01024928001' => 'vvi', 'GSVIVG01028227001' => 'vvi', 'GSVIVG01034151001' => 'vvi', 'HanXRQChr05g0135031' => 'han', 'HanXRQChr05g0135041' => 'han', 'HanXRQChr05g0140021' => 'han', 'HanXRQChr06g0178981' => 'han', 'HanXRQChr07g0188251' => 'han', 'HanXRQChr08g0235311' => 'han', 'HanXRQChr09g0271011' => 'han', 'HanXRQChr10g0293321' => 'han', 'HanXRQChr13g0388171' => 'han', 'Haze_00916' => 'cav', 'Haze_05063' => 'cav', 'Haze_20814' => 'cav', 'Haze_24128' => 'cav', 'Hma1.2p1_0745F.1_g212010' => 'hma', 'Hma1.2p1_0757F.1_g213260' => 'hma', 'Hma1.2p1_0936F.1_g238840' => 'hma', 'Hma1.2p1_1735F.1_g299890' => 'hma', 'Hma1.2p1_1861F.1_g305685' => 'hma', 'HPP92_003397' => 'vpl', 'HPP92_012597' => 'vpl', 'HPP92_015520' => 'vpl', 'HPP92_015539' => 'vpl', 'HPP92_020373' => 'vpl', 'Hund04938' => 'sun', 'Hund10677' => 'sun', 'Hund11033' => 'sun', 'Hund12155' => 'sun', 'Lalb_Chr01g0022551' => 'lal', 'Lalb_Chr03g0042341' => 'lal', 'Lalb_Chr07g0192931' => 'lal', 'Lalb_Chr12g0209551' => 'lal', 'Lalb_Chr19g0125251' => 'lal', 'Lalb_Chr19g0137891' => 'lal', 'Lalb_Chr21g0304641' => 'lal', 'Lalb_Chr21g0309881' => 'lal', 'Lj1A5T12' => 'lonja', 'Lj1C148G10' => 'lonja', 'Lj2A93T83' => 'lonja', 'Lj3A738G68' => 'lonja', 'Lj3C966T1' => 'lonja', 'Lj3g0018958' => 'lja', 'Lj3g0021831' => 'lja', 'Lj3g0025443' => 'lja', 'Lj4g0026809' => 'lja', 'Lj5g0012558' => 'lja', 'Lj5g0021586' => 'lja', 'Lsat_1_v5_gn_5_156840' => 'lsa', 'Lsat_1_v5_gn_8_73460' => 'lsa', 'Lsat_1_v5_gn_8_73481' => 'lsa', 'Lsat_1_v5_gn_9_31601' => 'lsa', 'Lsat_1_v5_gn_9_77320' => 'lsa', 'Manes.01G171300' => 'mes', 'Manes.01G171400' => 'mes', 'Manes.01G236100' => 'mes', 'Manes.02G130500' => 'mes', 'Manes.02G130600' => 'mes', 'Manes.03G180200' => 'mes', 'Manes.05G007000' => 'mes', 'Manes.08G084400' => 'mes', 'Manes.09G092600' => 'mes', 'Manes.15G027900' => 'mes', 'MBI04_g40948_MAGBIO' => 'mbi', 'MBI14_g12123_MAGBIO' => 'mbi', 'MBI18_g28915_MAGBIO' => 'mbi', 'MCO09G053' => 'mco', 'MCO11G782' => 'mco', 'MCO15G215' => 'mco', 'MD03G1088500' => 'mdo', 'MD03G1088600' => 'mdo', 'MD04G1130800' => 'mdo', 'MD09G1291700' => 'mdo', 'MD11G1097500' => 'mdo', 'MD11G1097600' => 'mdo', 'MD12G1143900' => 'mdo', 'MD13G1191400' => 'mdo', 'MD16G1191500' => 'mdo', 'Medtr1g085570' => 'mtr', 'Medtr1g104610' => 'mtr', 'Medtr2g097520' => 'mtr', 'Medtr4g021800' => 'mtr', 'Medtr4g021825' => 'mtr', 'Medtr4g064270' => 'mtr', 'Medtr4g064380' => 'mtr', 'Medtr7g062150' => 'mtr', 'MELO3C003138.2' => 'cme', 'MELO3C005187.2' => 'cme', 'MELO3C009252.2' => 'cme', 'MELO3C014481.2' => 'cme', 'MELO3C020616.2' => 'cme', 'MELO3C020617.2' => 'cme', 'MELO3C020618.2' => 'cme', 'Migut.G00328' => 'egut', 'Migut.J00320' => 'egut', 'Migut.L01000' => 'egut', 'Migut.L01953' => 'egut', 'MSTRG.10253' => 'ama', 'MSTRG.19077' => 'ama', 'MSTRG.26780' => 'ama', 'MSTRG.4023' => 'ama', 'MSTRG.5655' => 'ama', 'MSTRG.9992' => 'ama', 'Nitab4.5_0000043g0310' => 'nta', 'Nitab4.5_0000463g0080' => 'nta', 'Nitab4.5_0000705g0170' => 'nta', 'Nitab4.5_0001326g0060' => 'nta', 'Nitab4.5_0001628g0030' => 'nta', 'Nitab4.5_0002103g0110' => 'nta', 'Nitab4.5_0002946g0030' => 'nta', 'Nitab4.5_0004639g0030' => 'nta', 'Nn2g11149' => 'nnu', 'Nn2g13389' => 'nnu', 'Nn4g25326' => 'nnu', 'Nn4g26290' => 'nnu', 'Nn5g29865' => 'nnu', 'Oeu004163.1' => 'oeu', 'Oeu006901.1' => 'oeu', 'Oeu010096.1' => 'oeu', 'Oeu024340.1' => 'oeu', 'Oeu048369.1' => 'oeu', 'Os01g0973000' => 'osa', 'Os03g0273800' => 'osa', 'Os03g0701200' => 'osa', 'Os03g0834050' => 'osa', 'Os07g0634400' => 'osa', 'Peaxi162Scf00092g01414' => 'pax', 'Peaxi162Scf00165g00818' => 'pax', 'Peaxi162Scf00309g00516' => 'pax', 'Peaxi162Scf00774g00218' => 'pax', 'PGR004G1824' => 'pgr', 'PGR004G2606' => 'pgr', 'PGR031G2716' => 'pgr', 'PGR102G2460' => 'pgr', 'PGR142G2599' => 'pgr', 'PGSC0003DMG400000843' => 'stu', 'PGSC0003DMG400008829' => 'stu', 'PGSC0003DMG400030418' => 'stu', 'PGSC0003DMG400031834' => 'stu', 'PGSC0003DMG401028300' => 'stu', 'PGSC0003DMG402028300' => 'stu', 'Phvul.001G219300' => 'pvu', 'Phvul.007G056000' => 'pvu', 'Phvul.007G208000' => 'pvu', 'Phvul.008G119500' => 'pvu', 'Phvul.010G011200' => 'pvu', 'Phvul.010G014800' => 'pvu', 'Phvul.011G062900' => 'pvu', 'Phvul.L007043' => 'pvu', 'Potri.001G242300' => 'ptr', 'Potri.002G185300' => 'ptr', 'Potri.006G086900' => 'ptr', 'Potri.008G151700' => 'ptr', 'Potri.009G033500' => 'ptr', 'Potri.010G089300' => 'ptr', 'Potri.014G110800' => 'ptr', 'Pp3c27_8130' => 'ppa', 'Pp3c6_27410' => 'ppa', 'PRCOL_00001659' => 'pco', 'PRCOL_00001927' => 'pco', 'PRCOL_00003649' => 'pco', 'Prupe.1G011600' => 'ppe', 'Prupe.3G000800' => 'ppe', 'Prupe.3G001100' => 'ppe', 'Prupe.6G072700' => 'ppe', 'Prupe.6G072800' => 'ppe', 'Prupe.6G257300' => 'ppe', 'Prupe.8G033000' => 'ppe', 'Psat0s2633g0080' => 'psa', 'Psat0s3396g0080' => 'psa', 'Psat0s3396g0200' => 'psa', 'Psat3g139080' => 'psa', 'Psat5g285080' => 'psa', 'Psat6g157760' => 'psa', 'Psat6g208440' => 'psa', 'Psat7g215320' => 'psa', 'Psat7g215400' => 'psa', 'Psat7g235600' => 'psa', 'Psat7g235760' => 'psa', 'PSO063G4603' => 'pso', 'PSO210G0182' => 'pso', 'PSO210G0196' => 'pso', 'PSO339G0394' => 'pso', 'PSO339G4127' => 'pso', 'PSO513G0064' => 'pso', 'PSO761G0079' => 'pso', 'QL01p031003' => 'qlo', 'QL01p031078' => 'qlo', 'QL06p003004' => 'qlo', 'QL07p048731' => 'qlo', 'QL09p037427' => 'qlo', 'RcHm_v2.0_Chr3g0466361' => 'rch', 'RcHm_v2.0_Chr3g0485571' => 'rch', 'RcHm_v2.0_Chr4g0416551' => 'rch', 'RcHm_v2.0_Chr5g0065831' => 'rch', 'Rhsim01G0230500' => 'rsi', 'Rhsim05G0194000' => 'rsi', 'Rhsim08G0250400' => 'rsi', 'Sabra02G0131000' => 'sbr', 'Sabra06G0066300' => 'sbr', 'Sabra08G0115500' => 'sbr', 'Sabra09G0023900' => 'sbr', 'Sabra10G0054000' => 'sbr', 'Sabra14G0081500' => 'sbr', 'Sabra16G0147100' => 'sbr', 'SalBow2G2957' => 'sbo', 'SalBow4G3320' => 'sbo', 'SalBow8G1894' => 'sbo', 'Sc07g0007950' => 'sci', 'Sc12g0001360' => 'sci', 'Sc13g0004330' => 'sci', 'Sc20g0005010' => 'sci', 'Sed0000361' => 'sed', 'Sed0001706' => 'sed', 'Sed0002422' => 'sed', 'Sed0004029' => 'sed', 'Sed0004602' => 'sed', 'Sed0004943' => 'sed', 'Sed0008646' => 'sed', 'Sed0023313' => 'sed', 'Sed0024843' => 'sed', 'SEGI_00081' => 'sgi', 'SEGI_00947' => 'sgi', 'SEGI_04046' => 'sgi', 'SEGI_06880' => 'sgi', 'SEGI_09736' => 'sgi', 'SEGI_12741' => 'sgi', 'SEGI_14530' => 'sgi', 'SEGI_20705' => 'sgi', 'SEGI_26088' => 'sgi', 'SEGI_28323' => 'sgi', 'SEGI_33343' => 'sgi', 'SGA_v2.0_scaffold126G33775' => 'sas', 'SGA_v2.0_scaffold2G01337' => 'sas', 'SGA_v2.0_scaffold38G15006' => 'sas', 'SGA_v2.0_scaffold39G15264' => 'sas', 'SGA_v2.0_scaffold453G51880' => 'sas', 'SHI12696' => 'shi', 'SMO367G1096' => 'smo', 'Solyc01g068630.3' => 'sly', 'Solyc05g011880.3' => 'sly', 'Solyc06g076300.3' => 'sly', 'Solyc09g010940.4' => 'sly', 'Solyc09g075890.3' => 'sly', 'Sopen01g030560' => 'spe', 'Sopen05g006630' => 'spe', 'Sopen06g032720' => 'spe', 'Sopen09g005660' => 'spe', 'Sopen09g030690' => 'spe', 'Sp4g14540' => 'spa', 'Sp4g20030' => 'spa', 'Sp5g01320' => 'spa', 'Sp6g21170' => 'spa', 'Sp6g21180' => 'spa', 'Sp6g21190' => 'spa', 'Sp6g40220' => 'spa', 'TAR362G0122' => 'tar', 'TAR362G1338' => 'tar', 'TAR369G0590' => 'tar', 'TAR371G0824' => 'tar', 'TAR622G1429' => 'tar', 'TAR623G0734' => 'tar', 'TAR625G0441' => 'tar', 'TAR629G0976' => 'tar', 'TAR633G1195' => 'tar', 'TAR636G2660' => 'tar', 'THA.LOC104799440' => 'tha', 'THA.LOC104800966' => 'tha', 'THA.LOC104806559' => 'tha', 'THA.LOC104810765' => 'tha', 'THA.LOC104816266' => 'tha', 'THA.LOC104817419' => 'tha', 'THA.LOC104827021' => 'tha', 'Thecc.01G327400' => 'tca', 'Thecc.04G229200' => 'tca', 'Thecc.05G037400' => 'tca', 'Thecc.09G318600' => 'tca', 'Thecc.09G318700' => 'tca', 'Thhalv10006238m.g' => 'esa', 'Thhalv10014321m.g' => 'esa', 'Thhalv10014335m.g' => 'esa', 'Thhalv10015826m.g' => 'esa', 'Thhalv10017107m.g' => 'esa', 'Thhalv10017180m.g' => 'esa', 'Thhalv10029339m.g' => 'esa', 'TPR.G1699' => 'tpr', 'TPR.G23609' => 'tpr', 'TPR.G3081' => 'tpr', 'TPR.G40397' => 'tpr', 'TPR.G5522' => 'tpr', 'TPR.G5618' => 'tpr', 'TPR.G5626' => 'tpr', 'TWI09G1632' => 'twi', 'TWI23G1230' => 'twi', 'TWI53G1064' => 'twi', 'TWI59G0751' => 'twi', 'TWI74G0947' => 'twi', 'TWI77G0337' => 'twi', 'TWI79G1254' => 'twi', 'unitig_0.g2341' => 'ugi', 'unitig_26.g10006' => 'ugi', 'unitig_26.g10008' => 'ugi', 'unitig_26.g9192' => 'ugi', 'vmacro14547' => 'vma', 'vmacro15333' => 'vma', 'vmacro18743' => 'vma', 'vmacro20166' => 'vma', 'VMungo0331G0523' => 'vmu', 'VMungo0331G1202' => 'vmu', 'VMungo0720G1228' => 'vmu', 'VMungo0720G1514' => 'vmu', 'VMungo1080G0169' => 'vmu', 'VMungo1127G1475' => 'vmu', 'VMungo1383G1208' => 'vmu', 'VMungo1383G1698' => 'vmu', 'Zm00001eb012270' => 'zma', 'Zm00001eb054100' => 'zma', 'Zm00001eb063350' => 'zma', 'Zm00001eb328560' => 'zma', 'Zm00001eb342820' => 'zma', 'Zm00001eb362210' => 'zma', 'Zm00001eb397730' => 'zma', 'Zm00001eb399750' => 'zma' ), 'gf_id' => 'HOM05D000959', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000959' ), 'data_identifier' => 'HOM05D000959', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000959', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '622', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p07100' => 'bna', 'A03p11720' => 'bna', 'A05p08300' => 'bna', 'A05p13380' => 'bna', 'A09p54130' => 'bna', 'A10p16690' => 'bna', 'A10p16700' => 'bna', 'A10p33390' => 'bna', 'Aa31LG10G16020' => 'aar', 'Aa31LG1G11810' => 'aar', 'Aa31LG1G11830' => 'aar', 'Aa31LG1G22510' => 'aar', 'Aa31LG5G4890' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5793' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2310' => 'aag', 'Actinidia08499' => 'ach', 'Actinidia11262' => 'ach', 'Actinidia23926' => 'ach', 'Actinidia34420' => 'ach', 'Actinidia36970' => 'ach', 'Ah.02g111220' => 'amhyb', 'Ah.15g097750' => 'amhyb', 'AL4G27500' => 'aly', 'AL6G11470' => 'aly', 'AL8G35950' => 'aly', 'AL8G35960' => 'aly', 'AL8G35970' => 'aly', 'Aqoxy1G00912' => 'aox', 'Aqoxy2G02253' => 'aox', 'Aqoxy2G02411' => 'aox', 'Aqoxy5G00485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BZ66YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K8ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM4FUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6BF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HFV7XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25JBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0YNNV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MAKK6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P70IT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP2Z6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V61LZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YWP64R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3S9AI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7PGHH' => 'arhy', 'AT2G32150' => 'ath', 'AT3G62040' => 'ath', 'AT5G02230' => 'ath', 'AT5G59480' => 'ath', 'AT5G59490' => 'ath', 'ATR0332G060' => 'atr', 'ATR0559G190' => 'atr', 'ATR0693G294' => 'atr', 'Atru.chr3.3975' => 'acertr', 'Atru.chr3.3976' => 'acertr', 'Atru.chr3.3977' => 'acertr', 'Atru.chr4.2498' => 'acertr', 'Atru.chr5.838' => 'acertr', 'Atru.chr8.1990' => 'acertr', 'Atru.chr8.1991' => 'acertr', 'Atru.chr8.1992' => 'acertr', 'AUR62001759' => 'cqu', 'AUR62009545' => 'cqu', 'AUR62010474' => 'cqu', 'AUR62025820' => 'cqu', 'AUR62030422' => 'cqu', 'AUR62033605' => 'cqu', 'AUR62038615' => 'cqu', 'AUR62041347' => 'cqu', 'BcaB01g04574' => 'bca', 'BcaB02g09263' => 'bca', 'BcaB02g10453' => 'bca', 'BcaB05g22513' => 'bca', 'BcaB08g36253' => 'bca', 'BcaB08g36254' => 'bca', 'BcaC01g06519' => 'bca', 'BcaC02g11889' => 'bca', 'BcaC03g14010' => 'bca', 'BcaC03g18439' => 'bca', 'BcaC04g19765' => 'bca', 'BcaC09g48432' => 'bca', 'BcaNung07302' => 'bca', 'BolC2t06040H' => 'bol', 'BolC2t07346H' => 'bol', 'BolC3t13817H' => 'bol', 'BolC4t22625H' => 'bol', 'BolC4t23297H' => 'bol', 'BolC8t51278H' => 'bol', 'BolC9t58050H' => 'bol', 'BolC9t58051H' => 'bol', 'BolC9t60163H' => 'bol', 'BraA02t04712Z' => 'bra', 'BraA02t05791Z' => 'bra', 'BraA03t10483Z' => 'bra', 'BraA05t19795Z' => 'bra', 'BraA05t20276Z' => 'bra', 'BraA09t40827Z' => 'bra', 'BraA10t43750Z' => 'bra', 'BraA10t43751Z' => 'bra', 'BraA10t45370Z' => 'bra', 'C02p00400' => 'bna', 'C02p12460' => 'bna', 'C03p13680' => 'bna', 'C04p10270' => 'bna', 'C04p17500' => 'bna', 'C08p37010' => 'bna', 'C09p51880' => 'bna', 'C09p51890' => 'bna', 'C09p74300' => 'bna', 'CAN.G179.26' => 'can', 'CAN.G3384.1' => 'can', 'CAN.G394.68' => 'can', 'CAN.G907.13' => 'can', 'CANSAT11G0012' => 'cansat', 'CANSAT25G1586' => 'cansat', 'CANSAT35G0735' => 'cansat', 'CANSAT54G0556' => 'cansat', 'CANSAT64G0356' => 'cansat', 'CANSAT78G2042' => 'cansat', 'CARHR125920' => 'chi', 'CARHR131910' => 'chi', 'CARHR172390' => 'chi', 'CARHR211140' => 'chi', 'CARHR285850' => 'chi', 'CARHR285860' => 'chi', 'Carub.0004s1347' => 'cru', 'Carub.0004s1960' => 'cru', 'Carub.0005s2880' => 'cru', 'Carub.0006s0107' => 'cru', 'Carub.0008s2015' => 'cru', 'Carub.0008s2016' => 'cru', 'Carub.0008s2017' => 'cru', 'Ca_01315_v3' => 'car', 'Ca_05063_v3' => 'car', 'Ca_10231_v3' => 'car', 'Ca_10913_v3' => 'car', 'Ca_19156_v3' => 'car', 'Ca_23644_v3' => 'car', 'Ca_26735_v3' => 'car', 'Cc01_g13130' => 'ccan', 'Cc02_g21690' => 'ccan', 'Cc03_g03600' => 'ccan', 'Cc06_g02510' => 'ccan', 'CDE02G1265' => 'cde', 'CDE05G0415' => 'cde', 'CDE08G1082' => 'cde', 'Cfa005780' => 'cfa', 'Cfa011522' => 'cfa', 'Cfa011523' => 'cfa', 'Cfa015627' => 'cfa', 'Cfa017359' => 'cfa', 'Ciclev10005687m.g' => 'ccl', 'Ciclev10012173m.g' => 'ccl', 'Ciclev10021621m.g' => 'ccl', 'Ciclev10028968m.g' => 'ccl', 'Ciclev10029907m.g' => 'ccl', 'CiPaw.01G164800' => 'cil', 'CiPaw.07G083700' => 'cil', 'CiPaw.07G127000' => 'cil', 'CiPaw.07G136900' => 'cil', 'CiPaw.08G081700' => 'cil', 'CiPaw.09G194600' => 'cil', 'CiPaw.10G146500' => 'cil', 'CiPaw.13G091500' => 'cil', 'CiPaw.13G091600' => 'cil', 'ClCG00G003390' => 'cla', 'ClCG01G007220' => 'cla', 'ClCG03G001370' => 'cla', 'ClCG04G008100' => 'cla', 'ClCG06G006110' => 'cla', 'ClCG06G006130' => 'cla', 'ClCG10G021210' => 'cla', 'COL.COLO4_07648' => 'col', 'COL.COLO4_07650' => 'col', 'COL.COLO4_07651' => 'col', 'COL.COLO4_14780' => 'col', 'COL.COLO4_18546' => 'col', 'COL.COLO4_18547' => 'col', 'COL.COLO4_23103' => 'col', 'COL.COLO4_30419' => 'col', 'COL.COLO4_34232' => 'col', 'Cpa.g.sc169.20' => 'cpa', 'Cpa.g.sc57.45' => 'cpa', 'Cpa.g.sc58.124' => 'cpa', 'Cpa.g.sc58.125' => 'cpa', 'Cpa.g.sc81.118' => 'cpa', 'Cpa.g.sc81.119' => 'cpa', 'Cre12.g524700' => 'cre', 'CsaV3_1G034430' => 'csa', 'CsaV3_1G034440' => 'csa', 'CsaV3_1G034450' => 'csa', 'CsaV3_3G034830' => 'csa', 'CsaV3_4G025090' => 'csa', 'CsaV3_5G018660' => 'csa', 'CsaV3_6G038160' => 'csa', 'CSS0003447' => 'camsi', 'CSS0017840' => 'camsi', 'CSS0019260' => 'camsi', 'CSS0040375' => 'camsi', 'CSS0042533' => 'camsi', 'DCAR_005960' => 'dca', 'DCAR_012104' => 'dca', 'DCAR_012105' => 'dca', 'DCAR_012293' => 'dca', 'DCAR_015632' => 'dca', 'DCAR_024602' => 'dca', 'DCAR_028752' => 'dca', 'Dinv06261' => 'din', 'Dinv13982' => 'din', 'Dinv17029' => 'din', 'Dinv18463' => 'din', 'Dinv33181' => 'din', 'Dinv35585' => 'din', 'Dinv37161' => 'din', 'Dinv42977' => 'din', 'Dinv43122' => 'din', 'Dinv44517' => 'din', 'Duzib093G0256' => 'dzi', 'Duzib106G1254' => 'dzi', 'Duzib128G1789' => 'dzi', 'Duzib133G0633' => 'dzi', 'Duzib138G0510' => 'dzi', 'Duzib150G1084' => 'dzi', 'Duzib168G0488' => 'dzi', 'Duzib168G1523' => 'dzi', 'Duzib170G0133' => 'dzi', 'ECA234G1433' => 'eca', 'ECA236G1432' => 'eca', 'ECA236G2256' => 'eca', 'ECA236G2365' => 'eca', 'ECA236G4830' => 'eca', 'ECA248G1505' => 'eca', 'EL10Ac3g06431' => 'bvu', 'EL10Ac5g12577' => 'bvu', 'EL10Ac6g13533' => 'bvu', 'EL10Ac7g16045' => 'bvu', 'Eucgr.A01281' => 'egr', 'Eucgr.B02326' => 'egr', 'Eucgr.H03532' => 'egr', 'Eucgr.K00553' => 'egr', 'Eucgr.K03116' => 'egr', 'FAN02G3963' => 'fan', 'FAN05G0438' => 'fan', 'FAN09G2434' => 'fan', 'FAN12G3984' => 'fan', 'FAN14G0798' => 'fan', 'FAN17G0652' => 'fan', 'FAN19G1988' => 'fan', 'FAN22G0632' => 'fan', 'FAN23G0387' => 'fan', 'FAN26G1323' => 'fan', 'FAN28G0666' => 'fan', 'FvH4_1g26080' => 'fve', 'FvH4_3g36780' => 'fve', 'FvH4_4g15270' => 'fve', 'FvH4_6g13490' => 'fve', 'Glyma.01G098700' => 'gma', 'Glyma.03G065900' => 'gma', 'Glyma.03G073754' => 'gma', 'Glyma.03G073758' => 'gma', 'Glyma.03G083200' => 'gma', 'Glyma.03G225500' => 'gma', 'Glyma.05G037766' => 'gma', 'Glyma.07G133500' => 'gma', 'Glyma.10G139400' => 'gma', 'Glyma.10G248900' => 'gma', 'Glyma.11G137800' => 'gma', 'Glyma.12G061300' => 'gma', 'Glyma.13G337900' => 'gma', 'Glyma.15G036600' => 'gma', 'Glyma.18G182800' => 'gma', 'Glyma.19G222500' => 'gma', 'Glyma.20G144800' => 'gma', 'Gohir.A01G222000' => 'ghi', 'Gohir.A03G044000' => 'ghi', 'Gohir.A03G044100' => 'ghi', 'Gohir.A04G083100' => 'ghi', 'Gohir.A07G127200' => 'ghi', 'Gohir.A07G132400' => 'ghi', 'Gohir.A08G000700' => 'ghi', 'Gohir.A11G327300' => 'ghi', 'Gohir.D01G211500' => 'ghi', 'Gohir.D03G123400' => 'ghi', 'Gohir.D03G123500' => 'ghi', 'Gohir.D04G121800' => 'ghi', 'Gohir.D07G131500' => 'ghi', 'Gohir.D07G136600' => 'ghi', 'Gohir.D08G011600' => 'ghi', 'Gohir.D11G346200' => 'ghi', 'Gorai.001G142800' => 'gra', 'Gorai.001G148700' => 'gra', 'Gorai.002G257300' => 'gra', 'Gorai.003G130000' => 'gra', 'Gorai.003G130100' => 'gra', 'Gorai.004G005300' => 'gra', 'Gorai.007G376500' => 'gra', 'Gorai.012G104700' => 'gra', 'GSVIVG01017946001' => 'vvi', 'GSVIVG01024928001' => 'vvi', 'GSVIVG01028227001' => 'vvi', 'GSVIVG01034151001' => 'vvi', 'HanXRQChr05g0135031' => 'han', 'HanXRQChr05g0135041' => 'han', 'HanXRQChr05g0140021' => 'han', 'HanXRQChr06g0178981' => 'han', 'HanXRQChr07g0188251' => 'han', 'HanXRQChr08g0235311' => 'han', 'HanXRQChr09g0271011' => 'han', 'HanXRQChr10g0293321' => 'han', 'HanXRQChr13g0388171' => 'han', 'Haze_00916' => 'cav', 'Haze_05063' => 'cav', 'Haze_20814' => 'cav', 'Haze_24128' => 'cav', 'Hma1.2p1_0745F.1_g212010' => 'hma', 'Hma1.2p1_0757F.1_g213260' => 'hma', 'Hma1.2p1_0936F.1_g238840' => 'hma', 'Hma1.2p1_1735F.1_g299890' => 'hma', 'Hma1.2p1_1861F.1_g305685' => 'hma', 'HPP92_003397' => 'vpl', 'HPP92_012597' => 'vpl', 'HPP92_015520' => 'vpl', 'HPP92_015539' => 'vpl', 'HPP92_020373' => 'vpl', 'Hund04938' => 'sun', 'Hund10677' => 'sun', 'Hund11033' => 'sun', 'Hund12155' => 'sun', 'Lalb_Chr01g0022551' => 'lal', 'Lalb_Chr03g0042341' => 'lal', 'Lalb_Chr07g0192931' => 'lal', 'Lalb_Chr12g0209551' => 'lal', 'Lalb_Chr19g0125251' => 'lal', 'Lalb_Chr19g0137891' => 'lal', 'Lalb_Chr21g0304641' => 'lal', 'Lalb_Chr21g0309881' => 'lal', 'Lj1A5T12' => 'lonja', 'Lj1C148G10' => 'lonja', 'Lj2A93T83' => 'lonja', 'Lj3A738G68' => 'lonja', 'Lj3C966T1' => 'lonja', 'Lj3g0018958' => 'lja', 'Lj3g0021831' => 'lja', 'Lj3g0025443' => 'lja', 'Lj4g0026809' => 'lja', 'Lj5g0012558' => 'lja', 'Lj5g0021586' => 'lja', 'Lsat_1_v5_gn_5_156840' => 'lsa', 'Lsat_1_v5_gn_8_73460' => 'lsa', 'Lsat_1_v5_gn_8_73481' => 'lsa', 'Lsat_1_v5_gn_9_31601' => 'lsa', 'Lsat_1_v5_gn_9_77320' => 'lsa', 'Manes.01G171300' => 'mes', 'Manes.01G171400' => 'mes', 'Manes.01G236100' => 'mes', 'Manes.02G130500' => 'mes', 'Manes.02G130600' => 'mes', 'Manes.03G180200' => 'mes', 'Manes.05G007000' => 'mes', 'Manes.08G084400' => 'mes', 'Manes.09G092600' => 'mes', 'Manes.15G027900' => 'mes', 'MBI04_g40948_MAGBIO' => 'mbi', 'MBI14_g12123_MAGBIO' => 'mbi', 'MBI18_g28915_MAGBIO' => 'mbi', 'MCO09G053' => 'mco', 'MCO11G782' => 'mco', 'MCO15G215' => 'mco', 'MD03G1088500' => 'mdo', 'MD03G1088600' => 'mdo', 'MD04G1130800' => 'mdo', 'MD09G1291700' => 'mdo', 'MD11G1097500' => 'mdo', 'MD11G1097600' => 'mdo', 'MD12G1143900' => 'mdo', 'MD13G1191400' => 'mdo', 'MD16G1191500' => 'mdo', 'Medtr1g085570' => 'mtr', 'Medtr1g104610' => 'mtr', 'Medtr2g097520' => 'mtr', 'Medtr4g021800' => 'mtr', 'Medtr4g021825' => 'mtr', 'Medtr4g064270' => 'mtr', 'Medtr4g064380' => 'mtr', 'Medtr7g062150' => 'mtr', 'MELO3C003138.2' => 'cme', 'MELO3C005187.2' => 'cme', 'MELO3C009252.2' => 'cme', 'MELO3C014481.2' => 'cme', 'MELO3C020616.2' => 'cme', 'MELO3C020617.2' => 'cme', 'MELO3C020618.2' => 'cme', 'Migut.G00328' => 'egut', 'Migut.J00320' => 'egut', 'Migut.L01000' => 'egut', 'Migut.L01953' => 'egut', 'MSTRG.10253' => 'ama', 'MSTRG.19077' => 'ama', 'MSTRG.26780' => 'ama', 'MSTRG.4023' => 'ama', 'MSTRG.5655' => 'ama', 'MSTRG.9992' => 'ama', 'Nitab4.5_0000043g0310' => 'nta', 'Nitab4.5_0000463g0080' => 'nta', 'Nitab4.5_0000705g0170' => 'nta', 'Nitab4.5_0001326g0060' => 'nta', 'Nitab4.5_0001628g0030' => 'nta', 'Nitab4.5_0002103g0110' => 'nta', 'Nitab4.5_0002946g0030' => 'nta', 'Nitab4.5_0004639g0030' => 'nta', 'Nn2g11149' => 'nnu', 'Nn2g13389' => 'nnu', 'Nn4g25326' => 'nnu', 'Nn4g26290' => 'nnu', 'Nn5g29865' => 'nnu', 'Oeu004163.1' => 'oeu', 'Oeu006901.1' => 'oeu', 'Oeu010096.1' => 'oeu', 'Oeu024340.1' => 'oeu', 'Oeu048369.1' => 'oeu', 'Os01g0973000' => 'osa', 'Os03g0273800' => 'osa', 'Os03g0701200' => 'osa', 'Os03g0834050' => 'osa', 'Os07g0634400' => 'osa', 'Peaxi162Scf00092g01414' => 'pax', 'Peaxi162Scf00165g00818' => 'pax', 'Peaxi162Scf00309g00516' => 'pax', 'Peaxi162Scf00774g00218' => 'pax', 'PGR004G1824' => 'pgr', 'PGR004G2606' => 'pgr', 'PGR031G2716' => 'pgr', 'PGR102G2460' => 'pgr', 'PGR142G2599' => 'pgr', 'PGSC0003DMG400000843' => 'stu', 'PGSC0003DMG400008829' => 'stu', 'PGSC0003DMG400030418' => 'stu', 'PGSC0003DMG400031834' => 'stu', 'PGSC0003DMG401028300' => 'stu', 'PGSC0003DMG402028300' => 'stu', 'Phvul.001G219300' => 'pvu', 'Phvul.007G056000' => 'pvu', 'Phvul.007G208000' => 'pvu', 'Phvul.008G119500' => 'pvu', 'Phvul.010G011200' => 'pvu', 'Phvul.010G014800' => 'pvu', 'Phvul.011G062900' => 'pvu', 'Phvul.L007043' => 'pvu', 'Potri.001G242300' => 'ptr', 'Potri.002G185300' => 'ptr', 'Potri.006G086900' => 'ptr', 'Potri.008G151700' => 'ptr', 'Potri.009G033500' => 'ptr', 'Potri.010G089300' => 'ptr', 'Potri.014G110800' => 'ptr', 'Pp3c27_8130' => 'ppa', 'Pp3c6_27410' => 'ppa', 'PRCOL_00001659' => 'pco', 'PRCOL_00001927' => 'pco', 'PRCOL_00003649' => 'pco', 'Prupe.1G011600' => 'ppe', 'Prupe.3G000800' => 'ppe', 'Prupe.3G001100' => 'ppe', 'Prupe.6G072700' => 'ppe', 'Prupe.6G072800' => 'ppe', 'Prupe.6G257300' => 'ppe', 'Prupe.8G033000' => 'ppe', 'Psat0s2633g0080' => 'psa', 'Psat0s3396g0080' => 'psa', 'Psat0s3396g0200' => 'psa', 'Psat3g139080' => 'psa', 'Psat5g285080' => 'psa', 'Psat6g157760' => 'psa', 'Psat6g208440' => 'psa', 'Psat7g215320' => 'psa', 'Psat7g215400' => 'psa', 'Psat7g235600' => 'psa', 'Psat7g235760' => 'psa', 'PSO063G4603' => 'pso', 'PSO210G0182' => 'pso', 'PSO210G0196' => 'pso', 'PSO339G0394' => 'pso', 'PSO339G4127' => 'pso', 'PSO513G0064' => 'pso', 'PSO761G0079' => 'pso', 'QL01p031003' => 'qlo', 'QL01p031078' => 'qlo', 'QL06p003004' => 'qlo', 'QL07p048731' => 'qlo', 'QL09p037427' => 'qlo', 'RcHm_v2.0_Chr3g0466361' => 'rch', 'RcHm_v2.0_Chr3g0485571' => 'rch', 'RcHm_v2.0_Chr4g0416551' => 'rch', 'RcHm_v2.0_Chr5g0065831' => 'rch', 'Rhsim01G0230500' => 'rsi', 'Rhsim05G0194000' => 'rsi', 'Rhsim08G0250400' => 'rsi', 'Sabra02G0131000' => 'sbr', 'Sabra06G0066300' => 'sbr', 'Sabra08G0115500' => 'sbr', 'Sabra09G0023900' => 'sbr', 'Sabra10G0054000' => 'sbr', 'Sabra14G0081500' => 'sbr', 'Sabra16G0147100' => 'sbr', 'SalBow2G2957' => 'sbo', 'SalBow4G3320' => 'sbo', 'SalBow8G1894' => 'sbo', 'Sc07g0007950' => 'sci', 'Sc12g0001360' => 'sci', 'Sc13g0004330' => 'sci', 'Sc20g0005010' => 'sci', 'Sed0000361' => 'sed', 'Sed0001706' => 'sed', 'Sed0002422' => 'sed', 'Sed0004029' => 'sed', 'Sed0004602' => 'sed', 'Sed0004943' => 'sed', 'Sed0008646' => 'sed', 'Sed0023313' => 'sed', 'Sed0024843' => 'sed', 'SEGI_00081' => 'sgi', 'SEGI_00947' => 'sgi', 'SEGI_04046' => 'sgi', 'SEGI_06880' => 'sgi', 'SEGI_09736' => 'sgi', 'SEGI_12741' => 'sgi', 'SEGI_14530' => 'sgi', 'SEGI_20705' => 'sgi', 'SEGI_26088' => 'sgi', 'SEGI_28323' => 'sgi', 'SEGI_33343' => 'sgi', 'SGA_v2.0_scaffold126G33775' => 'sas', 'SGA_v2.0_scaffold2G01337' => 'sas', 'SGA_v2.0_scaffold38G15006' => 'sas', 'SGA_v2.0_scaffold39G15264' => 'sas', 'SGA_v2.0_scaffold453G51880' => 'sas', 'SHI12696' => 'shi', 'SMO367G1096' => 'smo', 'Solyc01g068630.3' => 'sly', 'Solyc05g011880.3' => 'sly', 'Solyc06g076300.3' => 'sly', 'Solyc09g010940.4' => 'sly', 'Solyc09g075890.3' => 'sly', 'Sopen01g030560' => 'spe', 'Sopen05g006630' => 'spe', 'Sopen06g032720' => 'spe', 'Sopen09g005660' => 'spe', 'Sopen09g030690' => 'spe', 'Sp4g14540' => 'spa', 'Sp4g20030' => 'spa', 'Sp5g01320' => 'spa', 'Sp6g21170' => 'spa', 'Sp6g21180' => 'spa', 'Sp6g21190' => 'spa', 'Sp6g40220' => 'spa', 'TAR362G0122' => 'tar', 'TAR362G1338' => 'tar', 'TAR369G0590' => 'tar', 'TAR371G0824' => 'tar', 'TAR622G1429' => 'tar', 'TAR623G0734' => 'tar', 'TAR625G0441' => 'tar', 'TAR629G0976' => 'tar', 'TAR633G1195' => 'tar', 'TAR636G2660' => 'tar', 'THA.LOC104799440' => 'tha', 'THA.LOC104800966' => 'tha', 'THA.LOC104806559' => 'tha', 'THA.LOC104810765' => 'tha', 'THA.LOC104816266' => 'tha', 'THA.LOC104817419' => 'tha', 'THA.LOC104827021' => 'tha', 'Thecc.01G327400' => 'tca', 'Thecc.04G229200' => 'tca', 'Thecc.05G037400' => 'tca', 'Thecc.09G318600' => 'tca', 'Thecc.09G318700' => 'tca', 'Thhalv10006238m.g' => 'esa', 'Thhalv10014321m.g' => 'esa', 'Thhalv10014335m.g' => 'esa', 'Thhalv10015826m.g' => 'esa', 'Thhalv10017107m.g' => 'esa', 'Thhalv10017180m.g' => 'esa', 'Thhalv10029339m.g' => 'esa', 'TPR.G1699' => 'tpr', 'TPR.G23609' => 'tpr', 'TPR.G3081' => 'tpr', 'TPR.G40397' => 'tpr', 'TPR.G5522' => 'tpr', 'TPR.G5618' => 'tpr', 'TPR.G5626' => 'tpr', 'TWI09G1632' => 'twi', 'TWI23G1230' => 'twi', 'TWI53G1064' => 'twi', 'TWI59G0751' => 'twi', 'TWI74G0947' => 'twi', 'TWI77G0337' => 'twi', 'TWI79G1254' => 'twi', 'unitig_0.g2341' => 'ugi', 'unitig_26.g10006' => 'ugi', 'unitig_26.g10008' => 'ugi', 'unitig_26.g9192' => 'ugi', 'vmacro14547' => 'vma', 'vmacro15333' => 'vma', 'vmacro18743' => 'vma', 'vmacro20166' => 'vma', 'VMungo0331G0523' => 'vmu', 'VMungo0331G1202' => 'vmu', 'VMungo0720G1228' => 'vmu', 'VMungo0720G1514' => 'vmu', 'VMungo1080G0169' => 'vmu', 'VMungo1127G1475' => 'vmu', 'VMungo1383G1208' => 'vmu', 'VMungo1383G1698' => 'vmu', 'Zm00001eb012270' => 'zma', 'Zm00001eb054100' => 'zma', 'Zm00001eb063350' => 'zma', 'Zm00001eb328560' => 'zma', 'Zm00001eb342820' => 'zma', 'Zm00001eb362210' => 'zma', 'Zm00001eb397730' => 'zma', 'Zm00001eb399750' => 'zma' ) $gf_id = 'HOM05D000959' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000959' ) $data_identifier = 'HOM05D000959' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 5, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 5, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 10, 'mbi' => (int) 3, 'mco' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 2, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 3, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 11, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399750' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000959', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '622', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p07100' => 'bna', 'A03p11720' => 'bna', 'A05p08300' => 'bna', 'A05p13380' => 'bna', 'A09p54130' => 'bna', 'A10p16690' => 'bna', 'A10p16700' => 'bna', 'A10p33390' => 'bna', 'Aa31LG10G16020' => 'aar', 'Aa31LG1G11810' => 'aar', 'Aa31LG1G11830' => 'aar', 'Aa31LG1G22510' => 'aar', 'Aa31LG5G4890' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5793' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2310' => 'aag', 'Actinidia08499' => 'ach', 'Actinidia11262' => 'ach', 'Actinidia23926' => 'ach', 'Actinidia34420' => 'ach', 'Actinidia36970' => 'ach', 'Ah.02g111220' => 'amhyb', 'Ah.15g097750' => 'amhyb', 'AL4G27500' => 'aly', 'AL6G11470' => 'aly', 'AL8G35950' => 'aly', 'AL8G35960' => 'aly', 'AL8G35970' => 'aly', 'Aqoxy1G00912' => 'aox', 'Aqoxy2G02253' => 'aox', 'Aqoxy2G02411' => 'aox', 'Aqoxy5G00485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BZ66YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K8ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM4FUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6BF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HFV7XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25JBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0YNNV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MAKK6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P70IT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP2Z6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V61LZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YWP64R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3S9AI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7PGHH' => 'arhy', 'AT2G32150' => 'ath', 'AT3G62040' => 'ath', 'AT5G02230' => 'ath', 'AT5G59480' => 'ath', 'AT5G59490' => 'ath', 'ATR0332G060' => 'atr', 'ATR0559G190' => 'atr', 'ATR0693G294' => 'atr', 'Atru.chr3.3975' => 'acertr', 'Atru.chr3.3976' => 'acertr', 'Atru.chr3.3977' => 'acertr', 'Atru.chr4.2498' => 'acertr', 'Atru.chr5.838' => 'acertr', 'Atru.chr8.1990' => 'acertr', 'Atru.chr8.1991' => 'acertr', 'Atru.chr8.1992' => 'acertr', 'AUR62001759' => 'cqu', 'AUR62009545' => 'cqu', 'AUR62010474' => 'cqu', 'AUR62025820' => 'cqu', 'AUR62030422' => 'cqu', 'AUR62033605' => 'cqu', 'AUR62038615' => 'cqu', 'AUR62041347' => 'cqu', 'BcaB01g04574' => 'bca', 'BcaB02g09263' => 'bca', 'BcaB02g10453' => 'bca', 'BcaB05g22513' => 'bca', 'BcaB08g36253' => 'bca', 'BcaB08g36254' => 'bca', 'BcaC01g06519' => 'bca', 'BcaC02g11889' => 'bca', 'BcaC03g14010' => 'bca', 'BcaC03g18439' => 'bca', 'BcaC04g19765' => 'bca', 'BcaC09g48432' => 'bca', 'BcaNung07302' => 'bca', 'BolC2t06040H' => 'bol', 'BolC2t07346H' => 'bol', 'BolC3t13817H' => 'bol', 'BolC4t22625H' => 'bol', 'BolC4t23297H' => 'bol', 'BolC8t51278H' => 'bol', 'BolC9t58050H' => 'bol', 'BolC9t58051H' => 'bol', 'BolC9t60163H' => 'bol', 'BraA02t04712Z' => 'bra', 'BraA02t05791Z' => 'bra', 'BraA03t10483Z' => 'bra', 'BraA05t19795Z' => 'bra', 'BraA05t20276Z' => 'bra', 'BraA09t40827Z' => 'bra', 'BraA10t43750Z' => 'bra', 'BraA10t43751Z' => 'bra', 'BraA10t45370Z' => 'bra', 'C02p00400' => 'bna', 'C02p12460' => 'bna', 'C03p13680' => 'bna', 'C04p10270' => 'bna', 'C04p17500' => 'bna', 'C08p37010' => 'bna', 'C09p51880' => 'bna', 'C09p51890' => 'bna', 'C09p74300' => 'bna', 'CAN.G179.26' => 'can', 'CAN.G3384.1' => 'can', 'CAN.G394.68' => 'can', 'CAN.G907.13' => 'can', 'CANSAT11G0012' => 'cansat', 'CANSAT25G1586' => 'cansat', 'CANSAT35G0735' => 'cansat', 'CANSAT54G0556' => 'cansat', 'CANSAT64G0356' => 'cansat', 'CANSAT78G2042' => 'cansat', 'CARHR125920' => 'chi', 'CARHR131910' => 'chi', 'CARHR172390' => 'chi', 'CARHR211140' => 'chi', 'CARHR285850' => 'chi', 'CARHR285860' => 'chi', 'Carub.0004s1347' => 'cru', 'Carub.0004s1960' => 'cru', 'Carub.0005s2880' => 'cru', 'Carub.0006s0107' => 'cru', 'Carub.0008s2015' => 'cru', 'Carub.0008s2016' => 'cru', 'Carub.0008s2017' => 'cru', 'Ca_01315_v3' => 'car', 'Ca_05063_v3' => 'car', 'Ca_10231_v3' => 'car', 'Ca_10913_v3' => 'car', 'Ca_19156_v3' => 'car', 'Ca_23644_v3' => 'car', 'Ca_26735_v3' => 'car', 'Cc01_g13130' => 'ccan', 'Cc02_g21690' => 'ccan', 'Cc03_g03600' => 'ccan', 'Cc06_g02510' => 'ccan', 'CDE02G1265' => 'cde', 'CDE05G0415' => 'cde', 'CDE08G1082' => 'cde', 'Cfa005780' => 'cfa', 'Cfa011522' => 'cfa', 'Cfa011523' => 'cfa', 'Cfa015627' => 'cfa', 'Cfa017359' => 'cfa', 'Ciclev10005687m.g' => 'ccl', 'Ciclev10012173m.g' => 'ccl', 'Ciclev10021621m.g' => 'ccl', 'Ciclev10028968m.g' => 'ccl', 'Ciclev10029907m.g' => 'ccl', 'CiPaw.01G164800' => 'cil', 'CiPaw.07G083700' => 'cil', 'CiPaw.07G127000' => 'cil', 'CiPaw.07G136900' => 'cil', 'CiPaw.08G081700' => 'cil', 'CiPaw.09G194600' => 'cil', 'CiPaw.10G146500' => 'cil', 'CiPaw.13G091500' => 'cil', 'CiPaw.13G091600' => 'cil', 'ClCG00G003390' => 'cla', 'ClCG01G007220' => 'cla', 'ClCG03G001370' => 'cla', 'ClCG04G008100' => 'cla', 'ClCG06G006110' => 'cla', 'ClCG06G006130' => 'cla', 'ClCG10G021210' => 'cla', 'COL.COLO4_07648' => 'col', 'COL.COLO4_07650' => 'col', 'COL.COLO4_07651' => 'col', 'COL.COLO4_14780' => 'col', 'COL.COLO4_18546' => 'col', 'COL.COLO4_18547' => 'col', 'COL.COLO4_23103' => 'col', 'COL.COLO4_30419' => 'col', 'COL.COLO4_34232' => 'col', 'Cpa.g.sc169.20' => 'cpa', 'Cpa.g.sc57.45' => 'cpa', 'Cpa.g.sc58.124' => 'cpa', 'Cpa.g.sc58.125' => 'cpa', 'Cpa.g.sc81.118' => 'cpa', 'Cpa.g.sc81.119' => 'cpa', 'Cre12.g524700' => 'cre', 'CsaV3_1G034430' => 'csa', 'CsaV3_1G034440' => 'csa', 'CsaV3_1G034450' => 'csa', 'CsaV3_3G034830' => 'csa', 'CsaV3_4G025090' => 'csa', 'CsaV3_5G018660' => 'csa', 'CsaV3_6G038160' => 'csa', 'CSS0003447' => 'camsi', 'CSS0017840' => 'camsi', 'CSS0019260' => 'camsi', 'CSS0040375' => 'camsi', 'CSS0042533' => 'camsi', 'DCAR_005960' => 'dca', 'DCAR_012104' => 'dca', 'DCAR_012105' => 'dca', 'DCAR_012293' => 'dca', 'DCAR_015632' => 'dca', 'DCAR_024602' => 'dca', 'DCAR_028752' => 'dca', 'Dinv06261' => 'din', 'Dinv13982' => 'din', 'Dinv17029' => 'din', 'Dinv18463' => 'din', 'Dinv33181' => 'din', 'Dinv35585' => 'din', 'Dinv37161' => 'din', 'Dinv42977' => 'din', 'Dinv43122' => 'din', 'Dinv44517' => 'din', 'Duzib093G0256' => 'dzi', 'Duzib106G1254' => 'dzi', 'Duzib128G1789' => 'dzi', 'Duzib133G0633' => 'dzi', 'Duzib138G0510' => 'dzi', 'Duzib150G1084' => 'dzi', 'Duzib168G0488' => 'dzi', 'Duzib168G1523' => 'dzi', 'Duzib170G0133' => 'dzi', 'ECA234G1433' => 'eca', 'ECA236G1432' => 'eca', 'ECA236G2256' => 'eca', 'ECA236G2365' => 'eca', 'ECA236G4830' => 'eca', 'ECA248G1505' => 'eca', 'EL10Ac3g06431' => 'bvu', 'EL10Ac5g12577' => 'bvu', 'EL10Ac6g13533' => 'bvu', 'EL10Ac7g16045' => 'bvu', 'Eucgr.A01281' => 'egr', 'Eucgr.B02326' => 'egr', 'Eucgr.H03532' => 'egr', 'Eucgr.K00553' => 'egr', 'Eucgr.K03116' => 'egr', 'FAN02G3963' => 'fan', 'FAN05G0438' => 'fan', 'FAN09G2434' => 'fan', 'FAN12G3984' => 'fan', 'FAN14G0798' => 'fan', 'FAN17G0652' => 'fan', 'FAN19G1988' => 'fan', 'FAN22G0632' => 'fan', 'FAN23G0387' => 'fan', 'FAN26G1323' => 'fan', 'FAN28G0666' => 'fan', 'FvH4_1g26080' => 'fve', 'FvH4_3g36780' => 'fve', 'FvH4_4g15270' => 'fve', 'FvH4_6g13490' => 'fve', 'Glyma.01G098700' => 'gma', 'Glyma.03G065900' => 'gma', 'Glyma.03G073754' => 'gma', 'Glyma.03G073758' => 'gma', 'Glyma.03G083200' => 'gma', 'Glyma.03G225500' => 'gma', 'Glyma.05G037766' => 'gma', 'Glyma.07G133500' => 'gma', 'Glyma.10G139400' => 'gma', 'Glyma.10G248900' => 'gma', 'Glyma.11G137800' => 'gma', 'Glyma.12G061300' => 'gma', 'Glyma.13G337900' => 'gma', 'Glyma.15G036600' => 'gma', 'Glyma.18G182800' => 'gma', 'Glyma.19G222500' => 'gma', 'Glyma.20G144800' => 'gma', 'Gohir.A01G222000' => 'ghi', 'Gohir.A03G044000' => 'ghi', 'Gohir.A03G044100' => 'ghi', 'Gohir.A04G083100' => 'ghi', 'Gohir.A07G127200' => 'ghi', 'Gohir.A07G132400' => 'ghi', 'Gohir.A08G000700' => 'ghi', 'Gohir.A11G327300' => 'ghi', 'Gohir.D01G211500' => 'ghi', 'Gohir.D03G123400' => 'ghi', 'Gohir.D03G123500' => 'ghi', 'Gohir.D04G121800' => 'ghi', 'Gohir.D07G131500' => 'ghi', 'Gohir.D07G136600' => 'ghi', 'Gohir.D08G011600' => 'ghi', 'Gohir.D11G346200' => 'ghi', 'Gorai.001G142800' => 'gra', 'Gorai.001G148700' => 'gra', 'Gorai.002G257300' => 'gra', 'Gorai.003G130000' => 'gra', 'Gorai.003G130100' => 'gra', 'Gorai.004G005300' => 'gra', 'Gorai.007G376500' => 'gra', 'Gorai.012G104700' => 'gra', 'GSVIVG01017946001' => 'vvi', 'GSVIVG01024928001' => 'vvi', 'GSVIVG01028227001' => 'vvi', 'GSVIVG01034151001' => 'vvi', 'HanXRQChr05g0135031' => 'han', 'HanXRQChr05g0135041' => 'han', 'HanXRQChr05g0140021' => 'han', 'HanXRQChr06g0178981' => 'han', 'HanXRQChr07g0188251' => 'han', 'HanXRQChr08g0235311' => 'han', 'HanXRQChr09g0271011' => 'han', 'HanXRQChr10g0293321' => 'han', 'HanXRQChr13g0388171' => 'han', 'Haze_00916' => 'cav', 'Haze_05063' => 'cav', 'Haze_20814' => 'cav', 'Haze_24128' => 'cav', 'Hma1.2p1_0745F.1_g212010' => 'hma', 'Hma1.2p1_0757F.1_g213260' => 'hma', 'Hma1.2p1_0936F.1_g238840' => 'hma', 'Hma1.2p1_1735F.1_g299890' => 'hma', 'Hma1.2p1_1861F.1_g305685' => 'hma', 'HPP92_003397' => 'vpl', 'HPP92_012597' => 'vpl', 'HPP92_015520' => 'vpl', 'HPP92_015539' => 'vpl', 'HPP92_020373' => 'vpl', 'Hund04938' => 'sun', 'Hund10677' => 'sun', 'Hund11033' => 'sun', 'Hund12155' => 'sun', 'Lalb_Chr01g0022551' => 'lal', 'Lalb_Chr03g0042341' => 'lal', 'Lalb_Chr07g0192931' => 'lal', 'Lalb_Chr12g0209551' => 'lal', 'Lalb_Chr19g0125251' => 'lal', 'Lalb_Chr19g0137891' => 'lal', 'Lalb_Chr21g0304641' => 'lal', 'Lalb_Chr21g0309881' => 'lal', 'Lj1A5T12' => 'lonja', 'Lj1C148G10' => 'lonja', 'Lj2A93T83' => 'lonja', 'Lj3A738G68' => 'lonja', 'Lj3C966T1' => 'lonja', 'Lj3g0018958' => 'lja', 'Lj3g0021831' => 'lja', 'Lj3g0025443' => 'lja', 'Lj4g0026809' => 'lja', 'Lj5g0012558' => 'lja', 'Lj5g0021586' => 'lja', 'Lsat_1_v5_gn_5_156840' => 'lsa', 'Lsat_1_v5_gn_8_73460' => 'lsa', 'Lsat_1_v5_gn_8_73481' => 'lsa', 'Lsat_1_v5_gn_9_31601' => 'lsa', 'Lsat_1_v5_gn_9_77320' => 'lsa', 'Manes.01G171300' => 'mes', 'Manes.01G171400' => 'mes', 'Manes.01G236100' => 'mes', 'Manes.02G130500' => 'mes', 'Manes.02G130600' => 'mes', 'Manes.03G180200' => 'mes', 'Manes.05G007000' => 'mes', 'Manes.08G084400' => 'mes', 'Manes.09G092600' => 'mes', 'Manes.15G027900' => 'mes', 'MBI04_g40948_MAGBIO' => 'mbi', 'MBI14_g12123_MAGBIO' => 'mbi', 'MBI18_g28915_MAGBIO' => 'mbi', 'MCO09G053' => 'mco', 'MCO11G782' => 'mco', 'MCO15G215' => 'mco', 'MD03G1088500' => 'mdo', 'MD03G1088600' => 'mdo', 'MD04G1130800' => 'mdo', 'MD09G1291700' => 'mdo', 'MD11G1097500' => 'mdo', 'MD11G1097600' => 'mdo', 'MD12G1143900' => 'mdo', 'MD13G1191400' => 'mdo', 'MD16G1191500' => 'mdo', 'Medtr1g085570' => 'mtr', 'Medtr1g104610' => 'mtr', 'Medtr2g097520' => 'mtr', 'Medtr4g021800' => 'mtr', 'Medtr4g021825' => 'mtr', 'Medtr4g064270' => 'mtr', 'Medtr4g064380' => 'mtr', 'Medtr7g062150' => 'mtr', 'MELO3C003138.2' => 'cme', 'MELO3C005187.2' => 'cme', 'MELO3C009252.2' => 'cme', 'MELO3C014481.2' => 'cme', 'MELO3C020616.2' => 'cme', 'MELO3C020617.2' => 'cme', 'MELO3C020618.2' => 'cme', 'Migut.G00328' => 'egut', 'Migut.J00320' => 'egut', 'Migut.L01000' => 'egut', 'Migut.L01953' => 'egut', 'MSTRG.10253' => 'ama', 'MSTRG.19077' => 'ama', 'MSTRG.26780' => 'ama', 'MSTRG.4023' => 'ama', 'MSTRG.5655' => 'ama', 'MSTRG.9992' => 'ama', 'Nitab4.5_0000043g0310' => 'nta', 'Nitab4.5_0000463g0080' => 'nta', 'Nitab4.5_0000705g0170' => 'nta', 'Nitab4.5_0001326g0060' => 'nta', 'Nitab4.5_0001628g0030' => 'nta', 'Nitab4.5_0002103g0110' => 'nta', 'Nitab4.5_0002946g0030' => 'nta', 'Nitab4.5_0004639g0030' => 'nta', 'Nn2g11149' => 'nnu', 'Nn2g13389' => 'nnu', 'Nn4g25326' => 'nnu', 'Nn4g26290' => 'nnu', 'Nn5g29865' => 'nnu', 'Oeu004163.1' => 'oeu', 'Oeu006901.1' => 'oeu', 'Oeu010096.1' => 'oeu', 'Oeu024340.1' => 'oeu', 'Oeu048369.1' => 'oeu', 'Os01g0973000' => 'osa', 'Os03g0273800' => 'osa', 'Os03g0701200' => 'osa', 'Os03g0834050' => 'osa', 'Os07g0634400' => 'osa', 'Peaxi162Scf00092g01414' => 'pax', 'Peaxi162Scf00165g00818' => 'pax', 'Peaxi162Scf00309g00516' => 'pax', 'Peaxi162Scf00774g00218' => 'pax', 'PGR004G1824' => 'pgr', 'PGR004G2606' => 'pgr', 'PGR031G2716' => 'pgr', 'PGR102G2460' => 'pgr', 'PGR142G2599' => 'pgr', 'PGSC0003DMG400000843' => 'stu', 'PGSC0003DMG400008829' => 'stu', 'PGSC0003DMG400030418' => 'stu', 'PGSC0003DMG400031834' => 'stu', 'PGSC0003DMG401028300' => 'stu', 'PGSC0003DMG402028300' => 'stu', 'Phvul.001G219300' => 'pvu', 'Phvul.007G056000' => 'pvu', 'Phvul.007G208000' => 'pvu', 'Phvul.008G119500' => 'pvu', 'Phvul.010G011200' => 'pvu', 'Phvul.010G014800' => 'pvu', 'Phvul.011G062900' => 'pvu', 'Phvul.L007043' => 'pvu', 'Potri.001G242300' => 'ptr', 'Potri.002G185300' => 'ptr', 'Potri.006G086900' => 'ptr', 'Potri.008G151700' => 'ptr', 'Potri.009G033500' => 'ptr', 'Potri.010G089300' => 'ptr', 'Potri.014G110800' => 'ptr', 'Pp3c27_8130' => 'ppa', 'Pp3c6_27410' => 'ppa', 'PRCOL_00001659' => 'pco', 'PRCOL_00001927' => 'pco', 'PRCOL_00003649' => 'pco', 'Prupe.1G011600' => 'ppe', 'Prupe.3G000800' => 'ppe', 'Prupe.3G001100' => 'ppe', 'Prupe.6G072700' => 'ppe', 'Prupe.6G072800' => 'ppe', 'Prupe.6G257300' => 'ppe', 'Prupe.8G033000' => 'ppe', 'Psat0s2633g0080' => 'psa', 'Psat0s3396g0080' => 'psa', 'Psat0s3396g0200' => 'psa', 'Psat3g139080' => 'psa', 'Psat5g285080' => 'psa', 'Psat6g157760' => 'psa', 'Psat6g208440' => 'psa', 'Psat7g215320' => 'psa', 'Psat7g215400' => 'psa', 'Psat7g235600' => 'psa', 'Psat7g235760' => 'psa', 'PSO063G4603' => 'pso', 'PSO210G0182' => 'pso', 'PSO210G0196' => 'pso', 'PSO339G0394' => 'pso', 'PSO339G4127' => 'pso', 'PSO513G0064' => 'pso', 'PSO761G0079' => 'pso', 'QL01p031003' => 'qlo', 'QL01p031078' => 'qlo', 'QL06p003004' => 'qlo', 'QL07p048731' => 'qlo', 'QL09p037427' => 'qlo', 'RcHm_v2.0_Chr3g0466361' => 'rch', 'RcHm_v2.0_Chr3g0485571' => 'rch', 'RcHm_v2.0_Chr4g0416551' => 'rch', 'RcHm_v2.0_Chr5g0065831' => 'rch', 'Rhsim01G0230500' => 'rsi', 'Rhsim05G0194000' => 'rsi', 'Rhsim08G0250400' => 'rsi', 'Sabra02G0131000' => 'sbr', 'Sabra06G0066300' => 'sbr', 'Sabra08G0115500' => 'sbr', 'Sabra09G0023900' => 'sbr', 'Sabra10G0054000' => 'sbr', 'Sabra14G0081500' => 'sbr', 'Sabra16G0147100' => 'sbr', 'SalBow2G2957' => 'sbo', 'SalBow4G3320' => 'sbo', 'SalBow8G1894' => 'sbo', 'Sc07g0007950' => 'sci', 'Sc12g0001360' => 'sci', 'Sc13g0004330' => 'sci', 'Sc20g0005010' => 'sci', 'Sed0000361' => 'sed', 'Sed0001706' => 'sed', 'Sed0002422' => 'sed', 'Sed0004029' => 'sed', 'Sed0004602' => 'sed', 'Sed0004943' => 'sed', 'Sed0008646' => 'sed', 'Sed0023313' => 'sed', 'Sed0024843' => 'sed', 'SEGI_00081' => 'sgi', 'SEGI_00947' => 'sgi', 'SEGI_04046' => 'sgi', 'SEGI_06880' => 'sgi', 'SEGI_09736' => 'sgi', 'SEGI_12741' => 'sgi', 'SEGI_14530' => 'sgi', 'SEGI_20705' => 'sgi', 'SEGI_26088' => 'sgi', 'SEGI_28323' => 'sgi', 'SEGI_33343' => 'sgi', 'SGA_v2.0_scaffold126G33775' => 'sas', 'SGA_v2.0_scaffold2G01337' => 'sas', 'SGA_v2.0_scaffold38G15006' => 'sas', 'SGA_v2.0_scaffold39G15264' => 'sas', 'SGA_v2.0_scaffold453G51880' => 'sas', 'SHI12696' => 'shi', 'SMO367G1096' => 'smo', 'Solyc01g068630.3' => 'sly', 'Solyc05g011880.3' => 'sly', 'Solyc06g076300.3' => 'sly', 'Solyc09g010940.4' => 'sly', 'Solyc09g075890.3' => 'sly', 'Sopen01g030560' => 'spe', 'Sopen05g006630' => 'spe', 'Sopen06g032720' => 'spe', 'Sopen09g005660' => 'spe', 'Sopen09g030690' => 'spe', 'Sp4g14540' => 'spa', 'Sp4g20030' => 'spa', 'Sp5g01320' => 'spa', 'Sp6g21170' => 'spa', 'Sp6g21180' => 'spa', 'Sp6g21190' => 'spa', 'Sp6g40220' => 'spa', 'TAR362G0122' => 'tar', 'TAR362G1338' => 'tar', 'TAR369G0590' => 'tar', 'TAR371G0824' => 'tar', 'TAR622G1429' => 'tar', 'TAR623G0734' => 'tar', 'TAR625G0441' => 'tar', 'TAR629G0976' => 'tar', 'TAR633G1195' => 'tar', 'TAR636G2660' => 'tar', 'THA.LOC104799440' => 'tha', 'THA.LOC104800966' => 'tha', 'THA.LOC104806559' => 'tha', 'THA.LOC104810765' => 'tha', 'THA.LOC104816266' => 'tha', 'THA.LOC104817419' => 'tha', 'THA.LOC104827021' => 'tha', 'Thecc.01G327400' => 'tca', 'Thecc.04G229200' => 'tca', 'Thecc.05G037400' => 'tca', 'Thecc.09G318600' => 'tca', 'Thecc.09G318700' => 'tca', 'Thhalv10006238m.g' => 'esa', 'Thhalv10014321m.g' => 'esa', 'Thhalv10014335m.g' => 'esa', 'Thhalv10015826m.g' => 'esa', 'Thhalv10017107m.g' => 'esa', 'Thhalv10017180m.g' => 'esa', 'Thhalv10029339m.g' => 'esa', 'TPR.G1699' => 'tpr', 'TPR.G23609' => 'tpr', 'TPR.G3081' => 'tpr', 'TPR.G40397' => 'tpr', 'TPR.G5522' => 'tpr', 'TPR.G5618' => 'tpr', 'TPR.G5626' => 'tpr', 'TWI09G1632' => 'twi', 'TWI23G1230' => 'twi', 'TWI53G1064' => 'twi', 'TWI59G0751' => 'twi', 'TWI74G0947' => 'twi', 'TWI77G0337' => 'twi', 'TWI79G1254' => 'twi', 'unitig_0.g2341' => 'ugi', 'unitig_26.g10006' => 'ugi', 'unitig_26.g10008' => 'ugi', 'unitig_26.g9192' => 'ugi', 'vmacro14547' => 'vma', 'vmacro15333' => 'vma', 'vmacro18743' => 'vma', 'vmacro20166' => 'vma', 'VMungo0331G0523' => 'vmu', 'VMungo0331G1202' => 'vmu', 'VMungo0720G1228' => 'vmu', 'VMungo0720G1514' => 'vmu', 'VMungo1080G0169' => 'vmu', 'VMungo1127G1475' => 'vmu', 'VMungo1383G1208' => 'vmu', 'VMungo1383G1698' => 'vmu', 'Zm00001eb012270' => 'zma', 'Zm00001eb054100' => 'zma', 'Zm00001eb063350' => 'zma', 'Zm00001eb328560' => 'zma', 'Zm00001eb342820' => 'zma', 'Zm00001eb362210' => 'zma', 'Zm00001eb397730' => 'zma', 'Zm00001eb399750' => 'zma' ), 'gf_id' => 'HOM05D000959', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000959' ), 'data_identifier' => 'HOM05D000959', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000959', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '622', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p07100' => 'bna', 'A03p11720' => 'bna', 'A05p08300' => 'bna', 'A05p13380' => 'bna', 'A09p54130' => 'bna', 'A10p16690' => 'bna', 'A10p16700' => 'bna', 'A10p33390' => 'bna', 'Aa31LG10G16020' => 'aar', 'Aa31LG1G11810' => 'aar', 'Aa31LG1G11830' => 'aar', 'Aa31LG1G22510' => 'aar', 'Aa31LG5G4890' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5793' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2310' => 'aag', 'Actinidia08499' => 'ach', 'Actinidia11262' => 'ach', 'Actinidia23926' => 'ach', 'Actinidia34420' => 'ach', 'Actinidia36970' => 'ach', 'Ah.02g111220' => 'amhyb', 'Ah.15g097750' => 'amhyb', 'AL4G27500' => 'aly', 'AL6G11470' => 'aly', 'AL8G35950' => 'aly', 'AL8G35960' => 'aly', 'AL8G35970' => 'aly', 'Aqoxy1G00912' => 'aox', 'Aqoxy2G02253' => 'aox', 'Aqoxy2G02411' => 'aox', 'Aqoxy5G00485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BZ66YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K8ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM4FUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6BF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HFV7XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25JBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0YNNV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MAKK6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P70IT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP2Z6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V61LZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YWP64R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3S9AI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7PGHH' => 'arhy', 'AT2G32150' => 'ath', 'AT3G62040' => 'ath', 'AT5G02230' => 'ath', 'AT5G59480' => 'ath', 'AT5G59490' => 'ath', 'ATR0332G060' => 'atr', 'ATR0559G190' => 'atr', 'ATR0693G294' => 'atr', 'Atru.chr3.3975' => 'acertr', 'Atru.chr3.3976' => 'acertr', 'Atru.chr3.3977' => 'acertr', 'Atru.chr4.2498' => 'acertr', 'Atru.chr5.838' => 'acertr', 'Atru.chr8.1990' => 'acertr', 'Atru.chr8.1991' => 'acertr', 'Atru.chr8.1992' => 'acertr', 'AUR62001759' => 'cqu', 'AUR62009545' => 'cqu', 'AUR62010474' => 'cqu', 'AUR62025820' => 'cqu', 'AUR62030422' => 'cqu', 'AUR62033605' => 'cqu', 'AUR62038615' => 'cqu', 'AUR62041347' => 'cqu', 'BcaB01g04574' => 'bca', 'BcaB02g09263' => 'bca', 'BcaB02g10453' => 'bca', 'BcaB05g22513' => 'bca', 'BcaB08g36253' => 'bca', 'BcaB08g36254' => 'bca', 'BcaC01g06519' => 'bca', 'BcaC02g11889' => 'bca', 'BcaC03g14010' => 'bca', 'BcaC03g18439' => 'bca', 'BcaC04g19765' => 'bca', 'BcaC09g48432' => 'bca', 'BcaNung07302' => 'bca', 'BolC2t06040H' => 'bol', 'BolC2t07346H' => 'bol', 'BolC3t13817H' => 'bol', 'BolC4t22625H' => 'bol', 'BolC4t23297H' => 'bol', 'BolC8t51278H' => 'bol', 'BolC9t58050H' => 'bol', 'BolC9t58051H' => 'bol', 'BolC9t60163H' => 'bol', 'BraA02t04712Z' => 'bra', 'BraA02t05791Z' => 'bra', 'BraA03t10483Z' => 'bra', 'BraA05t19795Z' => 'bra', 'BraA05t20276Z' => 'bra', 'BraA09t40827Z' => 'bra', 'BraA10t43750Z' => 'bra', 'BraA10t43751Z' => 'bra', 'BraA10t45370Z' => 'bra', 'C02p00400' => 'bna', 'C02p12460' => 'bna', 'C03p13680' => 'bna', 'C04p10270' => 'bna', 'C04p17500' => 'bna', 'C08p37010' => 'bna', 'C09p51880' => 'bna', 'C09p51890' => 'bna', 'C09p74300' => 'bna', 'CAN.G179.26' => 'can', 'CAN.G3384.1' => 'can', 'CAN.G394.68' => 'can', 'CAN.G907.13' => 'can', 'CANSAT11G0012' => 'cansat', 'CANSAT25G1586' => 'cansat', 'CANSAT35G0735' => 'cansat', 'CANSAT54G0556' => 'cansat', 'CANSAT64G0356' => 'cansat', 'CANSAT78G2042' => 'cansat', 'CARHR125920' => 'chi', 'CARHR131910' => 'chi', 'CARHR172390' => 'chi', 'CARHR211140' => 'chi', 'CARHR285850' => 'chi', 'CARHR285860' => 'chi', 'Carub.0004s1347' => 'cru', 'Carub.0004s1960' => 'cru', 'Carub.0005s2880' => 'cru', 'Carub.0006s0107' => 'cru', 'Carub.0008s2015' => 'cru', 'Carub.0008s2016' => 'cru', 'Carub.0008s2017' => 'cru', 'Ca_01315_v3' => 'car', 'Ca_05063_v3' => 'car', 'Ca_10231_v3' => 'car', 'Ca_10913_v3' => 'car', 'Ca_19156_v3' => 'car', 'Ca_23644_v3' => 'car', 'Ca_26735_v3' => 'car', 'Cc01_g13130' => 'ccan', 'Cc02_g21690' => 'ccan', 'Cc03_g03600' => 'ccan', 'Cc06_g02510' => 'ccan', 'CDE02G1265' => 'cde', 'CDE05G0415' => 'cde', 'CDE08G1082' => 'cde', 'Cfa005780' => 'cfa', 'Cfa011522' => 'cfa', 'Cfa011523' => 'cfa', 'Cfa015627' => 'cfa', 'Cfa017359' => 'cfa', 'Ciclev10005687m.g' => 'ccl', 'Ciclev10012173m.g' => 'ccl', 'Ciclev10021621m.g' => 'ccl', 'Ciclev10028968m.g' => 'ccl', 'Ciclev10029907m.g' => 'ccl', 'CiPaw.01G164800' => 'cil', 'CiPaw.07G083700' => 'cil', 'CiPaw.07G127000' => 'cil', 'CiPaw.07G136900' => 'cil', 'CiPaw.08G081700' => 'cil', 'CiPaw.09G194600' => 'cil', 'CiPaw.10G146500' => 'cil', 'CiPaw.13G091500' => 'cil', 'CiPaw.13G091600' => 'cil', 'ClCG00G003390' => 'cla', 'ClCG01G007220' => 'cla', 'ClCG03G001370' => 'cla', 'ClCG04G008100' => 'cla', 'ClCG06G006110' => 'cla', 'ClCG06G006130' => 'cla', 'ClCG10G021210' => 'cla', 'COL.COLO4_07648' => 'col', 'COL.COLO4_07650' => 'col', 'COL.COLO4_07651' => 'col', 'COL.COLO4_14780' => 'col', 'COL.COLO4_18546' => 'col', 'COL.COLO4_18547' => 'col', 'COL.COLO4_23103' => 'col', 'COL.COLO4_30419' => 'col', 'COL.COLO4_34232' => 'col', 'Cpa.g.sc169.20' => 'cpa', 'Cpa.g.sc57.45' => 'cpa', 'Cpa.g.sc58.124' => 'cpa', 'Cpa.g.sc58.125' => 'cpa', 'Cpa.g.sc81.118' => 'cpa', 'Cpa.g.sc81.119' => 'cpa', 'Cre12.g524700' => 'cre', 'CsaV3_1G034430' => 'csa', 'CsaV3_1G034440' => 'csa', 'CsaV3_1G034450' => 'csa', 'CsaV3_3G034830' => 'csa', 'CsaV3_4G025090' => 'csa', 'CsaV3_5G018660' => 'csa', 'CsaV3_6G038160' => 'csa', 'CSS0003447' => 'camsi', 'CSS0017840' => 'camsi', 'CSS0019260' => 'camsi', 'CSS0040375' => 'camsi', 'CSS0042533' => 'camsi', 'DCAR_005960' => 'dca', 'DCAR_012104' => 'dca', 'DCAR_012105' => 'dca', 'DCAR_012293' => 'dca', 'DCAR_015632' => 'dca', 'DCAR_024602' => 'dca', 'DCAR_028752' => 'dca', 'Dinv06261' => 'din', 'Dinv13982' => 'din', 'Dinv17029' => 'din', 'Dinv18463' => 'din', 'Dinv33181' => 'din', 'Dinv35585' => 'din', 'Dinv37161' => 'din', 'Dinv42977' => 'din', 'Dinv43122' => 'din', 'Dinv44517' => 'din', 'Duzib093G0256' => 'dzi', 'Duzib106G1254' => 'dzi', 'Duzib128G1789' => 'dzi', 'Duzib133G0633' => 'dzi', 'Duzib138G0510' => 'dzi', 'Duzib150G1084' => 'dzi', 'Duzib168G0488' => 'dzi', 'Duzib168G1523' => 'dzi', 'Duzib170G0133' => 'dzi', 'ECA234G1433' => 'eca', 'ECA236G1432' => 'eca', 'ECA236G2256' => 'eca', 'ECA236G2365' => 'eca', 'ECA236G4830' => 'eca', 'ECA248G1505' => 'eca', 'EL10Ac3g06431' => 'bvu', 'EL10Ac5g12577' => 'bvu', 'EL10Ac6g13533' => 'bvu', 'EL10Ac7g16045' => 'bvu', 'Eucgr.A01281' => 'egr', 'Eucgr.B02326' => 'egr', 'Eucgr.H03532' => 'egr', 'Eucgr.K00553' => 'egr', 'Eucgr.K03116' => 'egr', 'FAN02G3963' => 'fan', 'FAN05G0438' => 'fan', 'FAN09G2434' => 'fan', 'FAN12G3984' => 'fan', 'FAN14G0798' => 'fan', 'FAN17G0652' => 'fan', 'FAN19G1988' => 'fan', 'FAN22G0632' => 'fan', 'FAN23G0387' => 'fan', 'FAN26G1323' => 'fan', 'FAN28G0666' => 'fan', 'FvH4_1g26080' => 'fve', 'FvH4_3g36780' => 'fve', 'FvH4_4g15270' => 'fve', 'FvH4_6g13490' => 'fve', 'Glyma.01G098700' => 'gma', 'Glyma.03G065900' => 'gma', 'Glyma.03G073754' => 'gma', 'Glyma.03G073758' => 'gma', 'Glyma.03G083200' => 'gma', 'Glyma.03G225500' => 'gma', 'Glyma.05G037766' => 'gma', 'Glyma.07G133500' => 'gma', 'Glyma.10G139400' => 'gma', 'Glyma.10G248900' => 'gma', 'Glyma.11G137800' => 'gma', 'Glyma.12G061300' => 'gma', 'Glyma.13G337900' => 'gma', 'Glyma.15G036600' => 'gma', 'Glyma.18G182800' => 'gma', 'Glyma.19G222500' => 'gma', 'Glyma.20G144800' => 'gma', 'Gohir.A01G222000' => 'ghi', 'Gohir.A03G044000' => 'ghi', 'Gohir.A03G044100' => 'ghi', 'Gohir.A04G083100' => 'ghi', 'Gohir.A07G127200' => 'ghi', 'Gohir.A07G132400' => 'ghi', 'Gohir.A08G000700' => 'ghi', 'Gohir.A11G327300' => 'ghi', 'Gohir.D01G211500' => 'ghi', 'Gohir.D03G123400' => 'ghi', 'Gohir.D03G123500' => 'ghi', 'Gohir.D04G121800' => 'ghi', 'Gohir.D07G131500' => 'ghi', 'Gohir.D07G136600' => 'ghi', 'Gohir.D08G011600' => 'ghi', 'Gohir.D11G346200' => 'ghi', 'Gorai.001G142800' => 'gra', 'Gorai.001G148700' => 'gra', 'Gorai.002G257300' => 'gra', 'Gorai.003G130000' => 'gra', 'Gorai.003G130100' => 'gra', 'Gorai.004G005300' => 'gra', 'Gorai.007G376500' => 'gra', 'Gorai.012G104700' => 'gra', 'GSVIVG01017946001' => 'vvi', 'GSVIVG01024928001' => 'vvi', 'GSVIVG01028227001' => 'vvi', 'GSVIVG01034151001' => 'vvi', 'HanXRQChr05g0135031' => 'han', 'HanXRQChr05g0135041' => 'han', 'HanXRQChr05g0140021' => 'han', 'HanXRQChr06g0178981' => 'han', 'HanXRQChr07g0188251' => 'han', 'HanXRQChr08g0235311' => 'han', 'HanXRQChr09g0271011' => 'han', 'HanXRQChr10g0293321' => 'han', 'HanXRQChr13g0388171' => 'han', 'Haze_00916' => 'cav', 'Haze_05063' => 'cav', 'Haze_20814' => 'cav', 'Haze_24128' => 'cav', 'Hma1.2p1_0745F.1_g212010' => 'hma', 'Hma1.2p1_0757F.1_g213260' => 'hma', 'Hma1.2p1_0936F.1_g238840' => 'hma', 'Hma1.2p1_1735F.1_g299890' => 'hma', 'Hma1.2p1_1861F.1_g305685' => 'hma', 'HPP92_003397' => 'vpl', 'HPP92_012597' => 'vpl', 'HPP92_015520' => 'vpl', 'HPP92_015539' => 'vpl', 'HPP92_020373' => 'vpl', 'Hund04938' => 'sun', 'Hund10677' => 'sun', 'Hund11033' => 'sun', 'Hund12155' => 'sun', 'Lalb_Chr01g0022551' => 'lal', 'Lalb_Chr03g0042341' => 'lal', 'Lalb_Chr07g0192931' => 'lal', 'Lalb_Chr12g0209551' => 'lal', 'Lalb_Chr19g0125251' => 'lal', 'Lalb_Chr19g0137891' => 'lal', 'Lalb_Chr21g0304641' => 'lal', 'Lalb_Chr21g0309881' => 'lal', 'Lj1A5T12' => 'lonja', 'Lj1C148G10' => 'lonja', 'Lj2A93T83' => 'lonja', 'Lj3A738G68' => 'lonja', 'Lj3C966T1' => 'lonja', 'Lj3g0018958' => 'lja', 'Lj3g0021831' => 'lja', 'Lj3g0025443' => 'lja', 'Lj4g0026809' => 'lja', 'Lj5g0012558' => 'lja', 'Lj5g0021586' => 'lja', 'Lsat_1_v5_gn_5_156840' => 'lsa', 'Lsat_1_v5_gn_8_73460' => 'lsa', 'Lsat_1_v5_gn_8_73481' => 'lsa', 'Lsat_1_v5_gn_9_31601' => 'lsa', 'Lsat_1_v5_gn_9_77320' => 'lsa', 'Manes.01G171300' => 'mes', 'Manes.01G171400' => 'mes', 'Manes.01G236100' => 'mes', 'Manes.02G130500' => 'mes', 'Manes.02G130600' => 'mes', 'Manes.03G180200' => 'mes', 'Manes.05G007000' => 'mes', 'Manes.08G084400' => 'mes', 'Manes.09G092600' => 'mes', 'Manes.15G027900' => 'mes', 'MBI04_g40948_MAGBIO' => 'mbi', 'MBI14_g12123_MAGBIO' => 'mbi', 'MBI18_g28915_MAGBIO' => 'mbi', 'MCO09G053' => 'mco', 'MCO11G782' => 'mco', 'MCO15G215' => 'mco', 'MD03G1088500' => 'mdo', 'MD03G1088600' => 'mdo', 'MD04G1130800' => 'mdo', 'MD09G1291700' => 'mdo', 'MD11G1097500' => 'mdo', 'MD11G1097600' => 'mdo', 'MD12G1143900' => 'mdo', 'MD13G1191400' => 'mdo', 'MD16G1191500' => 'mdo', 'Medtr1g085570' => 'mtr', 'Medtr1g104610' => 'mtr', 'Medtr2g097520' => 'mtr', 'Medtr4g021800' => 'mtr', 'Medtr4g021825' => 'mtr', 'Medtr4g064270' => 'mtr', 'Medtr4g064380' => 'mtr', 'Medtr7g062150' => 'mtr', 'MELO3C003138.2' => 'cme', 'MELO3C005187.2' => 'cme', 'MELO3C009252.2' => 'cme', 'MELO3C014481.2' => 'cme', 'MELO3C020616.2' => 'cme', 'MELO3C020617.2' => 'cme', 'MELO3C020618.2' => 'cme', 'Migut.G00328' => 'egut', 'Migut.J00320' => 'egut', 'Migut.L01000' => 'egut', 'Migut.L01953' => 'egut', 'MSTRG.10253' => 'ama', 'MSTRG.19077' => 'ama', 'MSTRG.26780' => 'ama', 'MSTRG.4023' => 'ama', 'MSTRG.5655' => 'ama', 'MSTRG.9992' => 'ama', 'Nitab4.5_0000043g0310' => 'nta', 'Nitab4.5_0000463g0080' => 'nta', 'Nitab4.5_0000705g0170' => 'nta', 'Nitab4.5_0001326g0060' => 'nta', 'Nitab4.5_0001628g0030' => 'nta', 'Nitab4.5_0002103g0110' => 'nta', 'Nitab4.5_0002946g0030' => 'nta', 'Nitab4.5_0004639g0030' => 'nta', 'Nn2g11149' => 'nnu', 'Nn2g13389' => 'nnu', 'Nn4g25326' => 'nnu', 'Nn4g26290' => 'nnu', 'Nn5g29865' => 'nnu', 'Oeu004163.1' => 'oeu', 'Oeu006901.1' => 'oeu', 'Oeu010096.1' => 'oeu', 'Oeu024340.1' => 'oeu', 'Oeu048369.1' => 'oeu', 'Os01g0973000' => 'osa', 'Os03g0273800' => 'osa', 'Os03g0701200' => 'osa', 'Os03g0834050' => 'osa', 'Os07g0634400' => 'osa', 'Peaxi162Scf00092g01414' => 'pax', 'Peaxi162Scf00165g00818' => 'pax', 'Peaxi162Scf00309g00516' => 'pax', 'Peaxi162Scf00774g00218' => 'pax', 'PGR004G1824' => 'pgr', 'PGR004G2606' => 'pgr', 'PGR031G2716' => 'pgr', 'PGR102G2460' => 'pgr', 'PGR142G2599' => 'pgr', 'PGSC0003DMG400000843' => 'stu', 'PGSC0003DMG400008829' => 'stu', 'PGSC0003DMG400030418' => 'stu', 'PGSC0003DMG400031834' => 'stu', 'PGSC0003DMG401028300' => 'stu', 'PGSC0003DMG402028300' => 'stu', 'Phvul.001G219300' => 'pvu', 'Phvul.007G056000' => 'pvu', 'Phvul.007G208000' => 'pvu', 'Phvul.008G119500' => 'pvu', 'Phvul.010G011200' => 'pvu', 'Phvul.010G014800' => 'pvu', 'Phvul.011G062900' => 'pvu', 'Phvul.L007043' => 'pvu', 'Potri.001G242300' => 'ptr', 'Potri.002G185300' => 'ptr', 'Potri.006G086900' => 'ptr', 'Potri.008G151700' => 'ptr', 'Potri.009G033500' => 'ptr', 'Potri.010G089300' => 'ptr', 'Potri.014G110800' => 'ptr', 'Pp3c27_8130' => 'ppa', 'Pp3c6_27410' => 'ppa', 'PRCOL_00001659' => 'pco', 'PRCOL_00001927' => 'pco', 'PRCOL_00003649' => 'pco', 'Prupe.1G011600' => 'ppe', 'Prupe.3G000800' => 'ppe', 'Prupe.3G001100' => 'ppe', 'Prupe.6G072700' => 'ppe', 'Prupe.6G072800' => 'ppe', 'Prupe.6G257300' => 'ppe', 'Prupe.8G033000' => 'ppe', 'Psat0s2633g0080' => 'psa', 'Psat0s3396g0080' => 'psa', 'Psat0s3396g0200' => 'psa', 'Psat3g139080' => 'psa', 'Psat5g285080' => 'psa', 'Psat6g157760' => 'psa', 'Psat6g208440' => 'psa', 'Psat7g215320' => 'psa', 'Psat7g215400' => 'psa', 'Psat7g235600' => 'psa', 'Psat7g235760' => 'psa', 'PSO063G4603' => 'pso', 'PSO210G0182' => 'pso', 'PSO210G0196' => 'pso', 'PSO339G0394' => 'pso', 'PSO339G4127' => 'pso', 'PSO513G0064' => 'pso', 'PSO761G0079' => 'pso', 'QL01p031003' => 'qlo', 'QL01p031078' => 'qlo', 'QL06p003004' => 'qlo', 'QL07p048731' => 'qlo', 'QL09p037427' => 'qlo', 'RcHm_v2.0_Chr3g0466361' => 'rch', 'RcHm_v2.0_Chr3g0485571' => 'rch', 'RcHm_v2.0_Chr4g0416551' => 'rch', 'RcHm_v2.0_Chr5g0065831' => 'rch', 'Rhsim01G0230500' => 'rsi', 'Rhsim05G0194000' => 'rsi', 'Rhsim08G0250400' => 'rsi', 'Sabra02G0131000' => 'sbr', 'Sabra06G0066300' => 'sbr', 'Sabra08G0115500' => 'sbr', 'Sabra09G0023900' => 'sbr', 'Sabra10G0054000' => 'sbr', 'Sabra14G0081500' => 'sbr', 'Sabra16G0147100' => 'sbr', 'SalBow2G2957' => 'sbo', 'SalBow4G3320' => 'sbo', 'SalBow8G1894' => 'sbo', 'Sc07g0007950' => 'sci', 'Sc12g0001360' => 'sci', 'Sc13g0004330' => 'sci', 'Sc20g0005010' => 'sci', 'Sed0000361' => 'sed', 'Sed0001706' => 'sed', 'Sed0002422' => 'sed', 'Sed0004029' => 'sed', 'Sed0004602' => 'sed', 'Sed0004943' => 'sed', 'Sed0008646' => 'sed', 'Sed0023313' => 'sed', 'Sed0024843' => 'sed', 'SEGI_00081' => 'sgi', 'SEGI_00947' => 'sgi', 'SEGI_04046' => 'sgi', 'SEGI_06880' => 'sgi', 'SEGI_09736' => 'sgi', 'SEGI_12741' => 'sgi', 'SEGI_14530' => 'sgi', 'SEGI_20705' => 'sgi', 'SEGI_26088' => 'sgi', 'SEGI_28323' => 'sgi', 'SEGI_33343' => 'sgi', 'SGA_v2.0_scaffold126G33775' => 'sas', 'SGA_v2.0_scaffold2G01337' => 'sas', 'SGA_v2.0_scaffold38G15006' => 'sas', 'SGA_v2.0_scaffold39G15264' => 'sas', 'SGA_v2.0_scaffold453G51880' => 'sas', 'SHI12696' => 'shi', 'SMO367G1096' => 'smo', 'Solyc01g068630.3' => 'sly', 'Solyc05g011880.3' => 'sly', 'Solyc06g076300.3' => 'sly', 'Solyc09g010940.4' => 'sly', 'Solyc09g075890.3' => 'sly', 'Sopen01g030560' => 'spe', 'Sopen05g006630' => 'spe', 'Sopen06g032720' => 'spe', 'Sopen09g005660' => 'spe', 'Sopen09g030690' => 'spe', 'Sp4g14540' => 'spa', 'Sp4g20030' => 'spa', 'Sp5g01320' => 'spa', 'Sp6g21170' => 'spa', 'Sp6g21180' => 'spa', 'Sp6g21190' => 'spa', 'Sp6g40220' => 'spa', 'TAR362G0122' => 'tar', 'TAR362G1338' => 'tar', 'TAR369G0590' => 'tar', 'TAR371G0824' => 'tar', 'TAR622G1429' => 'tar', 'TAR623G0734' => 'tar', 'TAR625G0441' => 'tar', 'TAR629G0976' => 'tar', 'TAR633G1195' => 'tar', 'TAR636G2660' => 'tar', 'THA.LOC104799440' => 'tha', 'THA.LOC104800966' => 'tha', 'THA.LOC104806559' => 'tha', 'THA.LOC104810765' => 'tha', 'THA.LOC104816266' => 'tha', 'THA.LOC104817419' => 'tha', 'THA.LOC104827021' => 'tha', 'Thecc.01G327400' => 'tca', 'Thecc.04G229200' => 'tca', 'Thecc.05G037400' => 'tca', 'Thecc.09G318600' => 'tca', 'Thecc.09G318700' => 'tca', 'Thhalv10006238m.g' => 'esa', 'Thhalv10014321m.g' => 'esa', 'Thhalv10014335m.g' => 'esa', 'Thhalv10015826m.g' => 'esa', 'Thhalv10017107m.g' => 'esa', 'Thhalv10017180m.g' => 'esa', 'Thhalv10029339m.g' => 'esa', 'TPR.G1699' => 'tpr', 'TPR.G23609' => 'tpr', 'TPR.G3081' => 'tpr', 'TPR.G40397' => 'tpr', 'TPR.G5522' => 'tpr', 'TPR.G5618' => 'tpr', 'TPR.G5626' => 'tpr', 'TWI09G1632' => 'twi', 'TWI23G1230' => 'twi', 'TWI53G1064' => 'twi', 'TWI59G0751' => 'twi', 'TWI74G0947' => 'twi', 'TWI77G0337' => 'twi', 'TWI79G1254' => 'twi', 'unitig_0.g2341' => 'ugi', 'unitig_26.g10006' => 'ugi', 'unitig_26.g10008' => 'ugi', 'unitig_26.g9192' => 'ugi', 'vmacro14547' => 'vma', 'vmacro15333' => 'vma', 'vmacro18743' => 'vma', 'vmacro20166' => 'vma', 'VMungo0331G0523' => 'vmu', 'VMungo0331G1202' => 'vmu', 'VMungo0720G1228' => 'vmu', 'VMungo0720G1514' => 'vmu', 'VMungo1080G0169' => 'vmu', 'VMungo1127G1475' => 'vmu', 'VMungo1383G1208' => 'vmu', 'VMungo1383G1698' => 'vmu', 'Zm00001eb012270' => 'zma', 'Zm00001eb054100' => 'zma', 'Zm00001eb063350' => 'zma', 'Zm00001eb328560' => 'zma', 'Zm00001eb342820' => 'zma', 'Zm00001eb362210' => 'zma', 'Zm00001eb397730' => 'zma', 'Zm00001eb399750' => 'zma' ) $gf_id = 'HOM05D000959' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000959' ) $data_identifier = 'HOM05D000959' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 5, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 5, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 10, 'mbi' => (int) 3, 'mco' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 2, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 3, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 11, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399750' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000959', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '622', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p07100' => 'bna', 'A03p11720' => 'bna', 'A05p08300' => 'bna', 'A05p13380' => 'bna', 'A09p54130' => 'bna', 'A10p16690' => 'bna', 'A10p16700' => 'bna', 'A10p33390' => 'bna', 'Aa31LG10G16020' => 'aar', 'Aa31LG1G11810' => 'aar', 'Aa31LG1G11830' => 'aar', 'Aa31LG1G22510' => 'aar', 'Aa31LG5G4890' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5793' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2310' => 'aag', 'Actinidia08499' => 'ach', 'Actinidia11262' => 'ach', 'Actinidia23926' => 'ach', 'Actinidia34420' => 'ach', 'Actinidia36970' => 'ach', 'Ah.02g111220' => 'amhyb', 'Ah.15g097750' => 'amhyb', 'AL4G27500' => 'aly', 'AL6G11470' => 'aly', 'AL8G35950' => 'aly', 'AL8G35960' => 'aly', 'AL8G35970' => 'aly', 'Aqoxy1G00912' => 'aox', 'Aqoxy2G02253' => 'aox', 'Aqoxy2G02411' => 'aox', 'Aqoxy5G00485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BZ66YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K8ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM4FUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6BF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HFV7XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25JBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0YNNV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MAKK6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P70IT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP2Z6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V61LZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YWP64R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3S9AI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7PGHH' => 'arhy', 'AT2G32150' => 'ath', 'AT3G62040' => 'ath', 'AT5G02230' => 'ath', 'AT5G59480' => 'ath', 'AT5G59490' => 'ath', 'ATR0332G060' => 'atr', 'ATR0559G190' => 'atr', 'ATR0693G294' => 'atr', 'Atru.chr3.3975' => 'acertr', 'Atru.chr3.3976' => 'acertr', 'Atru.chr3.3977' => 'acertr', 'Atru.chr4.2498' => 'acertr', 'Atru.chr5.838' => 'acertr', 'Atru.chr8.1990' => 'acertr', 'Atru.chr8.1991' => 'acertr', 'Atru.chr8.1992' => 'acertr', 'AUR62001759' => 'cqu', 'AUR62009545' => 'cqu', 'AUR62010474' => 'cqu', 'AUR62025820' => 'cqu', 'AUR62030422' => 'cqu', 'AUR62033605' => 'cqu', 'AUR62038615' => 'cqu', 'AUR62041347' => 'cqu', 'BcaB01g04574' => 'bca', 'BcaB02g09263' => 'bca', 'BcaB02g10453' => 'bca', 'BcaB05g22513' => 'bca', 'BcaB08g36253' => 'bca', 'BcaB08g36254' => 'bca', 'BcaC01g06519' => 'bca', 'BcaC02g11889' => 'bca', 'BcaC03g14010' => 'bca', 'BcaC03g18439' => 'bca', 'BcaC04g19765' => 'bca', 'BcaC09g48432' => 'bca', 'BcaNung07302' => 'bca', 'BolC2t06040H' => 'bol', 'BolC2t07346H' => 'bol', 'BolC3t13817H' => 'bol', 'BolC4t22625H' => 'bol', 'BolC4t23297H' => 'bol', 'BolC8t51278H' => 'bol', 'BolC9t58050H' => 'bol', 'BolC9t58051H' => 'bol', 'BolC9t60163H' => 'bol', 'BraA02t04712Z' => 'bra', 'BraA02t05791Z' => 'bra', 'BraA03t10483Z' => 'bra', 'BraA05t19795Z' => 'bra', 'BraA05t20276Z' => 'bra', 'BraA09t40827Z' => 'bra', 'BraA10t43750Z' => 'bra', 'BraA10t43751Z' => 'bra', 'BraA10t45370Z' => 'bra', 'C02p00400' => 'bna', 'C02p12460' => 'bna', 'C03p13680' => 'bna', 'C04p10270' => 'bna', 'C04p17500' => 'bna', 'C08p37010' => 'bna', 'C09p51880' => 'bna', 'C09p51890' => 'bna', 'C09p74300' => 'bna', 'CAN.G179.26' => 'can', 'CAN.G3384.1' => 'can', 'CAN.G394.68' => 'can', 'CAN.G907.13' => 'can', 'CANSAT11G0012' => 'cansat', 'CANSAT25G1586' => 'cansat', 'CANSAT35G0735' => 'cansat', 'CANSAT54G0556' => 'cansat', 'CANSAT64G0356' => 'cansat', 'CANSAT78G2042' => 'cansat', 'CARHR125920' => 'chi', 'CARHR131910' => 'chi', 'CARHR172390' => 'chi', 'CARHR211140' => 'chi', 'CARHR285850' => 'chi', 'CARHR285860' => 'chi', 'Carub.0004s1347' => 'cru', 'Carub.0004s1960' => 'cru', 'Carub.0005s2880' => 'cru', 'Carub.0006s0107' => 'cru', 'Carub.0008s2015' => 'cru', 'Carub.0008s2016' => 'cru', 'Carub.0008s2017' => 'cru', 'Ca_01315_v3' => 'car', 'Ca_05063_v3' => 'car', 'Ca_10231_v3' => 'car', 'Ca_10913_v3' => 'car', 'Ca_19156_v3' => 'car', 'Ca_23644_v3' => 'car', 'Ca_26735_v3' => 'car', 'Cc01_g13130' => 'ccan', 'Cc02_g21690' => 'ccan', 'Cc03_g03600' => 'ccan', 'Cc06_g02510' => 'ccan', 'CDE02G1265' => 'cde', 'CDE05G0415' => 'cde', 'CDE08G1082' => 'cde', 'Cfa005780' => 'cfa', 'Cfa011522' => 'cfa', 'Cfa011523' => 'cfa', 'Cfa015627' => 'cfa', 'Cfa017359' => 'cfa', 'Ciclev10005687m.g' => 'ccl', 'Ciclev10012173m.g' => 'ccl', 'Ciclev10021621m.g' => 'ccl', 'Ciclev10028968m.g' => 'ccl', 'Ciclev10029907m.g' => 'ccl', 'CiPaw.01G164800' => 'cil', 'CiPaw.07G083700' => 'cil', 'CiPaw.07G127000' => 'cil', 'CiPaw.07G136900' => 'cil', 'CiPaw.08G081700' => 'cil', 'CiPaw.09G194600' => 'cil', 'CiPaw.10G146500' => 'cil', 'CiPaw.13G091500' => 'cil', 'CiPaw.13G091600' => 'cil', 'ClCG00G003390' => 'cla', 'ClCG01G007220' => 'cla', 'ClCG03G001370' => 'cla', 'ClCG04G008100' => 'cla', 'ClCG06G006110' => 'cla', 'ClCG06G006130' => 'cla', 'ClCG10G021210' => 'cla', 'COL.COLO4_07648' => 'col', 'COL.COLO4_07650' => 'col', 'COL.COLO4_07651' => 'col', 'COL.COLO4_14780' => 'col', 'COL.COLO4_18546' => 'col', 'COL.COLO4_18547' => 'col', 'COL.COLO4_23103' => 'col', 'COL.COLO4_30419' => 'col', 'COL.COLO4_34232' => 'col', 'Cpa.g.sc169.20' => 'cpa', 'Cpa.g.sc57.45' => 'cpa', 'Cpa.g.sc58.124' => 'cpa', 'Cpa.g.sc58.125' => 'cpa', 'Cpa.g.sc81.118' => 'cpa', 'Cpa.g.sc81.119' => 'cpa', 'Cre12.g524700' => 'cre', 'CsaV3_1G034430' => 'csa', 'CsaV3_1G034440' => 'csa', 'CsaV3_1G034450' => 'csa', 'CsaV3_3G034830' => 'csa', 'CsaV3_4G025090' => 'csa', 'CsaV3_5G018660' => 'csa', 'CsaV3_6G038160' => 'csa', 'CSS0003447' => 'camsi', 'CSS0017840' => 'camsi', 'CSS0019260' => 'camsi', 'CSS0040375' => 'camsi', 'CSS0042533' => 'camsi', 'DCAR_005960' => 'dca', 'DCAR_012104' => 'dca', 'DCAR_012105' => 'dca', 'DCAR_012293' => 'dca', 'DCAR_015632' => 'dca', 'DCAR_024602' => 'dca', 'DCAR_028752' => 'dca', 'Dinv06261' => 'din', 'Dinv13982' => 'din', 'Dinv17029' => 'din', 'Dinv18463' => 'din', 'Dinv33181' => 'din', 'Dinv35585' => 'din', 'Dinv37161' => 'din', 'Dinv42977' => 'din', 'Dinv43122' => 'din', 'Dinv44517' => 'din', 'Duzib093G0256' => 'dzi', 'Duzib106G1254' => 'dzi', 'Duzib128G1789' => 'dzi', 'Duzib133G0633' => 'dzi', 'Duzib138G0510' => 'dzi', 'Duzib150G1084' => 'dzi', 'Duzib168G0488' => 'dzi', 'Duzib168G1523' => 'dzi', 'Duzib170G0133' => 'dzi', 'ECA234G1433' => 'eca', 'ECA236G1432' => 'eca', 'ECA236G2256' => 'eca', 'ECA236G2365' => 'eca', 'ECA236G4830' => 'eca', 'ECA248G1505' => 'eca', 'EL10Ac3g06431' => 'bvu', 'EL10Ac5g12577' => 'bvu', 'EL10Ac6g13533' => 'bvu', 'EL10Ac7g16045' => 'bvu', 'Eucgr.A01281' => 'egr', 'Eucgr.B02326' => 'egr', 'Eucgr.H03532' => 'egr', 'Eucgr.K00553' => 'egr', 'Eucgr.K03116' => 'egr', 'FAN02G3963' => 'fan', 'FAN05G0438' => 'fan', 'FAN09G2434' => 'fan', 'FAN12G3984' => 'fan', 'FAN14G0798' => 'fan', 'FAN17G0652' => 'fan', 'FAN19G1988' => 'fan', 'FAN22G0632' => 'fan', 'FAN23G0387' => 'fan', 'FAN26G1323' => 'fan', 'FAN28G0666' => 'fan', 'FvH4_1g26080' => 'fve', 'FvH4_3g36780' => 'fve', 'FvH4_4g15270' => 'fve', 'FvH4_6g13490' => 'fve', 'Glyma.01G098700' => 'gma', 'Glyma.03G065900' => 'gma', 'Glyma.03G073754' => 'gma', 'Glyma.03G073758' => 'gma', 'Glyma.03G083200' => 'gma', 'Glyma.03G225500' => 'gma', 'Glyma.05G037766' => 'gma', 'Glyma.07G133500' => 'gma', 'Glyma.10G139400' => 'gma', 'Glyma.10G248900' => 'gma', 'Glyma.11G137800' => 'gma', 'Glyma.12G061300' => 'gma', 'Glyma.13G337900' => 'gma', 'Glyma.15G036600' => 'gma', 'Glyma.18G182800' => 'gma', 'Glyma.19G222500' => 'gma', 'Glyma.20G144800' => 'gma', 'Gohir.A01G222000' => 'ghi', 'Gohir.A03G044000' => 'ghi', 'Gohir.A03G044100' => 'ghi', 'Gohir.A04G083100' => 'ghi', 'Gohir.A07G127200' => 'ghi', 'Gohir.A07G132400' => 'ghi', 'Gohir.A08G000700' => 'ghi', 'Gohir.A11G327300' => 'ghi', 'Gohir.D01G211500' => 'ghi', 'Gohir.D03G123400' => 'ghi', 'Gohir.D03G123500' => 'ghi', 'Gohir.D04G121800' => 'ghi', 'Gohir.D07G131500' => 'ghi', 'Gohir.D07G136600' => 'ghi', 'Gohir.D08G011600' => 'ghi', 'Gohir.D11G346200' => 'ghi', 'Gorai.001G142800' => 'gra', 'Gorai.001G148700' => 'gra', 'Gorai.002G257300' => 'gra', 'Gorai.003G130000' => 'gra', 'Gorai.003G130100' => 'gra', 'Gorai.004G005300' => 'gra', 'Gorai.007G376500' => 'gra', 'Gorai.012G104700' => 'gra', 'GSVIVG01017946001' => 'vvi', 'GSVIVG01024928001' => 'vvi', 'GSVIVG01028227001' => 'vvi', 'GSVIVG01034151001' => 'vvi', 'HanXRQChr05g0135031' => 'han', 'HanXRQChr05g0135041' => 'han', 'HanXRQChr05g0140021' => 'han', 'HanXRQChr06g0178981' => 'han', 'HanXRQChr07g0188251' => 'han', 'HanXRQChr08g0235311' => 'han', 'HanXRQChr09g0271011' => 'han', 'HanXRQChr10g0293321' => 'han', 'HanXRQChr13g0388171' => 'han', 'Haze_00916' => 'cav', 'Haze_05063' => 'cav', 'Haze_20814' => 'cav', 'Haze_24128' => 'cav', 'Hma1.2p1_0745F.1_g212010' => 'hma', 'Hma1.2p1_0757F.1_g213260' => 'hma', 'Hma1.2p1_0936F.1_g238840' => 'hma', 'Hma1.2p1_1735F.1_g299890' => 'hma', 'Hma1.2p1_1861F.1_g305685' => 'hma', 'HPP92_003397' => 'vpl', 'HPP92_012597' => 'vpl', 'HPP92_015520' => 'vpl', 'HPP92_015539' => 'vpl', 'HPP92_020373' => 'vpl', 'Hund04938' => 'sun', 'Hund10677' => 'sun', 'Hund11033' => 'sun', 'Hund12155' => 'sun', 'Lalb_Chr01g0022551' => 'lal', 'Lalb_Chr03g0042341' => 'lal', 'Lalb_Chr07g0192931' => 'lal', 'Lalb_Chr12g0209551' => 'lal', 'Lalb_Chr19g0125251' => 'lal', 'Lalb_Chr19g0137891' => 'lal', 'Lalb_Chr21g0304641' => 'lal', 'Lalb_Chr21g0309881' => 'lal', 'Lj1A5T12' => 'lonja', 'Lj1C148G10' => 'lonja', 'Lj2A93T83' => 'lonja', 'Lj3A738G68' => 'lonja', 'Lj3C966T1' => 'lonja', 'Lj3g0018958' => 'lja', 'Lj3g0021831' => 'lja', 'Lj3g0025443' => 'lja', 'Lj4g0026809' => 'lja', 'Lj5g0012558' => 'lja', 'Lj5g0021586' => 'lja', 'Lsat_1_v5_gn_5_156840' => 'lsa', 'Lsat_1_v5_gn_8_73460' => 'lsa', 'Lsat_1_v5_gn_8_73481' => 'lsa', 'Lsat_1_v5_gn_9_31601' => 'lsa', 'Lsat_1_v5_gn_9_77320' => 'lsa', 'Manes.01G171300' => 'mes', 'Manes.01G171400' => 'mes', 'Manes.01G236100' => 'mes', 'Manes.02G130500' => 'mes', 'Manes.02G130600' => 'mes', 'Manes.03G180200' => 'mes', 'Manes.05G007000' => 'mes', 'Manes.08G084400' => 'mes', 'Manes.09G092600' => 'mes', 'Manes.15G027900' => 'mes', 'MBI04_g40948_MAGBIO' => 'mbi', 'MBI14_g12123_MAGBIO' => 'mbi', 'MBI18_g28915_MAGBIO' => 'mbi', 'MCO09G053' => 'mco', 'MCO11G782' => 'mco', 'MCO15G215' => 'mco', 'MD03G1088500' => 'mdo', 'MD03G1088600' => 'mdo', 'MD04G1130800' => 'mdo', 'MD09G1291700' => 'mdo', 'MD11G1097500' => 'mdo', 'MD11G1097600' => 'mdo', 'MD12G1143900' => 'mdo', 'MD13G1191400' => 'mdo', 'MD16G1191500' => 'mdo', 'Medtr1g085570' => 'mtr', 'Medtr1g104610' => 'mtr', 'Medtr2g097520' => 'mtr', 'Medtr4g021800' => 'mtr', 'Medtr4g021825' => 'mtr', 'Medtr4g064270' => 'mtr', 'Medtr4g064380' => 'mtr', 'Medtr7g062150' => 'mtr', 'MELO3C003138.2' => 'cme', 'MELO3C005187.2' => 'cme', 'MELO3C009252.2' => 'cme', 'MELO3C014481.2' => 'cme', 'MELO3C020616.2' => 'cme', 'MELO3C020617.2' => 'cme', 'MELO3C020618.2' => 'cme', 'Migut.G00328' => 'egut', 'Migut.J00320' => 'egut', 'Migut.L01000' => 'egut', 'Migut.L01953' => 'egut', 'MSTRG.10253' => 'ama', 'MSTRG.19077' => 'ama', 'MSTRG.26780' => 'ama', 'MSTRG.4023' => 'ama', 'MSTRG.5655' => 'ama', 'MSTRG.9992' => 'ama', 'Nitab4.5_0000043g0310' => 'nta', 'Nitab4.5_0000463g0080' => 'nta', 'Nitab4.5_0000705g0170' => 'nta', 'Nitab4.5_0001326g0060' => 'nta', 'Nitab4.5_0001628g0030' => 'nta', 'Nitab4.5_0002103g0110' => 'nta', 'Nitab4.5_0002946g0030' => 'nta', 'Nitab4.5_0004639g0030' => 'nta', 'Nn2g11149' => 'nnu', 'Nn2g13389' => 'nnu', 'Nn4g25326' => 'nnu', 'Nn4g26290' => 'nnu', 'Nn5g29865' => 'nnu', 'Oeu004163.1' => 'oeu', 'Oeu006901.1' => 'oeu', 'Oeu010096.1' => 'oeu', 'Oeu024340.1' => 'oeu', 'Oeu048369.1' => 'oeu', 'Os01g0973000' => 'osa', 'Os03g0273800' => 'osa', 'Os03g0701200' => 'osa', 'Os03g0834050' => 'osa', 'Os07g0634400' => 'osa', 'Peaxi162Scf00092g01414' => 'pax', 'Peaxi162Scf00165g00818' => 'pax', 'Peaxi162Scf00309g00516' => 'pax', 'Peaxi162Scf00774g00218' => 'pax', 'PGR004G1824' => 'pgr', 'PGR004G2606' => 'pgr', 'PGR031G2716' => 'pgr', 'PGR102G2460' => 'pgr', 'PGR142G2599' => 'pgr', 'PGSC0003DMG400000843' => 'stu', 'PGSC0003DMG400008829' => 'stu', 'PGSC0003DMG400030418' => 'stu', 'PGSC0003DMG400031834' => 'stu', 'PGSC0003DMG401028300' => 'stu', 'PGSC0003DMG402028300' => 'stu', 'Phvul.001G219300' => 'pvu', 'Phvul.007G056000' => 'pvu', 'Phvul.007G208000' => 'pvu', 'Phvul.008G119500' => 'pvu', 'Phvul.010G011200' => 'pvu', 'Phvul.010G014800' => 'pvu', 'Phvul.011G062900' => 'pvu', 'Phvul.L007043' => 'pvu', 'Potri.001G242300' => 'ptr', 'Potri.002G185300' => 'ptr', 'Potri.006G086900' => 'ptr', 'Potri.008G151700' => 'ptr', 'Potri.009G033500' => 'ptr', 'Potri.010G089300' => 'ptr', 'Potri.014G110800' => 'ptr', 'Pp3c27_8130' => 'ppa', 'Pp3c6_27410' => 'ppa', 'PRCOL_00001659' => 'pco', 'PRCOL_00001927' => 'pco', 'PRCOL_00003649' => 'pco', 'Prupe.1G011600' => 'ppe', 'Prupe.3G000800' => 'ppe', 'Prupe.3G001100' => 'ppe', 'Prupe.6G072700' => 'ppe', 'Prupe.6G072800' => 'ppe', 'Prupe.6G257300' => 'ppe', 'Prupe.8G033000' => 'ppe', 'Psat0s2633g0080' => 'psa', 'Psat0s3396g0080' => 'psa', 'Psat0s3396g0200' => 'psa', 'Psat3g139080' => 'psa', 'Psat5g285080' => 'psa', 'Psat6g157760' => 'psa', 'Psat6g208440' => 'psa', 'Psat7g215320' => 'psa', 'Psat7g215400' => 'psa', 'Psat7g235600' => 'psa', 'Psat7g235760' => 'psa', 'PSO063G4603' => 'pso', 'PSO210G0182' => 'pso', 'PSO210G0196' => 'pso', 'PSO339G0394' => 'pso', 'PSO339G4127' => 'pso', 'PSO513G0064' => 'pso', 'PSO761G0079' => 'pso', 'QL01p031003' => 'qlo', 'QL01p031078' => 'qlo', 'QL06p003004' => 'qlo', 'QL07p048731' => 'qlo', 'QL09p037427' => 'qlo', 'RcHm_v2.0_Chr3g0466361' => 'rch', 'RcHm_v2.0_Chr3g0485571' => 'rch', 'RcHm_v2.0_Chr4g0416551' => 'rch', 'RcHm_v2.0_Chr5g0065831' => 'rch', 'Rhsim01G0230500' => 'rsi', 'Rhsim05G0194000' => 'rsi', 'Rhsim08G0250400' => 'rsi', 'Sabra02G0131000' => 'sbr', 'Sabra06G0066300' => 'sbr', 'Sabra08G0115500' => 'sbr', 'Sabra09G0023900' => 'sbr', 'Sabra10G0054000' => 'sbr', 'Sabra14G0081500' => 'sbr', 'Sabra16G0147100' => 'sbr', 'SalBow2G2957' => 'sbo', 'SalBow4G3320' => 'sbo', 'SalBow8G1894' => 'sbo', 'Sc07g0007950' => 'sci', 'Sc12g0001360' => 'sci', 'Sc13g0004330' => 'sci', 'Sc20g0005010' => 'sci', 'Sed0000361' => 'sed', 'Sed0001706' => 'sed', 'Sed0002422' => 'sed', 'Sed0004029' => 'sed', 'Sed0004602' => 'sed', 'Sed0004943' => 'sed', 'Sed0008646' => 'sed', 'Sed0023313' => 'sed', 'Sed0024843' => 'sed', 'SEGI_00081' => 'sgi', 'SEGI_00947' => 'sgi', 'SEGI_04046' => 'sgi', 'SEGI_06880' => 'sgi', 'SEGI_09736' => 'sgi', 'SEGI_12741' => 'sgi', 'SEGI_14530' => 'sgi', 'SEGI_20705' => 'sgi', 'SEGI_26088' => 'sgi', 'SEGI_28323' => 'sgi', 'SEGI_33343' => 'sgi', 'SGA_v2.0_scaffold126G33775' => 'sas', 'SGA_v2.0_scaffold2G01337' => 'sas', 'SGA_v2.0_scaffold38G15006' => 'sas', 'SGA_v2.0_scaffold39G15264' => 'sas', 'SGA_v2.0_scaffold453G51880' => 'sas', 'SHI12696' => 'shi', 'SMO367G1096' => 'smo', 'Solyc01g068630.3' => 'sly', 'Solyc05g011880.3' => 'sly', 'Solyc06g076300.3' => 'sly', 'Solyc09g010940.4' => 'sly', 'Solyc09g075890.3' => 'sly', 'Sopen01g030560' => 'spe', 'Sopen05g006630' => 'spe', 'Sopen06g032720' => 'spe', 'Sopen09g005660' => 'spe', 'Sopen09g030690' => 'spe', 'Sp4g14540' => 'spa', 'Sp4g20030' => 'spa', 'Sp5g01320' => 'spa', 'Sp6g21170' => 'spa', 'Sp6g21180' => 'spa', 'Sp6g21190' => 'spa', 'Sp6g40220' => 'spa', 'TAR362G0122' => 'tar', 'TAR362G1338' => 'tar', 'TAR369G0590' => 'tar', 'TAR371G0824' => 'tar', 'TAR622G1429' => 'tar', 'TAR623G0734' => 'tar', 'TAR625G0441' => 'tar', 'TAR629G0976' => 'tar', 'TAR633G1195' => 'tar', 'TAR636G2660' => 'tar', 'THA.LOC104799440' => 'tha', 'THA.LOC104800966' => 'tha', 'THA.LOC104806559' => 'tha', 'THA.LOC104810765' => 'tha', 'THA.LOC104816266' => 'tha', 'THA.LOC104817419' => 'tha', 'THA.LOC104827021' => 'tha', 'Thecc.01G327400' => 'tca', 'Thecc.04G229200' => 'tca', 'Thecc.05G037400' => 'tca', 'Thecc.09G318600' => 'tca', 'Thecc.09G318700' => 'tca', 'Thhalv10006238m.g' => 'esa', 'Thhalv10014321m.g' => 'esa', 'Thhalv10014335m.g' => 'esa', 'Thhalv10015826m.g' => 'esa', 'Thhalv10017107m.g' => 'esa', 'Thhalv10017180m.g' => 'esa', 'Thhalv10029339m.g' => 'esa', 'TPR.G1699' => 'tpr', 'TPR.G23609' => 'tpr', 'TPR.G3081' => 'tpr', 'TPR.G40397' => 'tpr', 'TPR.G5522' => 'tpr', 'TPR.G5618' => 'tpr', 'TPR.G5626' => 'tpr', 'TWI09G1632' => 'twi', 'TWI23G1230' => 'twi', 'TWI53G1064' => 'twi', 'TWI59G0751' => 'twi', 'TWI74G0947' => 'twi', 'TWI77G0337' => 'twi', 'TWI79G1254' => 'twi', 'unitig_0.g2341' => 'ugi', 'unitig_26.g10006' => 'ugi', 'unitig_26.g10008' => 'ugi', 'unitig_26.g9192' => 'ugi', 'vmacro14547' => 'vma', 'vmacro15333' => 'vma', 'vmacro18743' => 'vma', 'vmacro20166' => 'vma', 'VMungo0331G0523' => 'vmu', 'VMungo0331G1202' => 'vmu', 'VMungo0720G1228' => 'vmu', 'VMungo0720G1514' => 'vmu', 'VMungo1080G0169' => 'vmu', 'VMungo1127G1475' => 'vmu', 'VMungo1383G1208' => 'vmu', 'VMungo1383G1698' => 'vmu', 'Zm00001eb012270' => 'zma', 'Zm00001eb054100' => 'zma', 'Zm00001eb063350' => 'zma', 'Zm00001eb328560' => 'zma', 'Zm00001eb342820' => 'zma', 'Zm00001eb362210' => 'zma', 'Zm00001eb397730' => 'zma', 'Zm00001eb399750' => 'zma' ), 'gf_id' => 'HOM05D000959', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000959' ), 'data_identifier' => 'HOM05D000959', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000959', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '622', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p07100' => 'bna', 'A03p11720' => 'bna', 'A05p08300' => 'bna', 'A05p13380' => 'bna', 'A09p54130' => 'bna', 'A10p16690' => 'bna', 'A10p16700' => 'bna', 'A10p33390' => 'bna', 'Aa31LG10G16020' => 'aar', 'Aa31LG1G11810' => 'aar', 'Aa31LG1G11830' => 'aar', 'Aa31LG1G22510' => 'aar', 'Aa31LG5G4890' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5793' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2310' => 'aag', 'Actinidia08499' => 'ach', 'Actinidia11262' => 'ach', 'Actinidia23926' => 'ach', 'Actinidia34420' => 'ach', 'Actinidia36970' => 'ach', 'Ah.02g111220' => 'amhyb', 'Ah.15g097750' => 'amhyb', 'AL4G27500' => 'aly', 'AL6G11470' => 'aly', 'AL8G35950' => 'aly', 'AL8G35960' => 'aly', 'AL8G35970' => 'aly', 'Aqoxy1G00912' => 'aox', 'Aqoxy2G02253' => 'aox', 'Aqoxy2G02411' => 'aox', 'Aqoxy5G00485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BZ66YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K8ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM4FUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6BF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HFV7XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25JBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0YNNV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MAKK6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P70IT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP2Z6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V61LZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YWP64R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3S9AI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7PGHH' => 'arhy', 'AT2G32150' => 'ath', 'AT3G62040' => 'ath', 'AT5G02230' => 'ath', 'AT5G59480' => 'ath', 'AT5G59490' => 'ath', 'ATR0332G060' => 'atr', 'ATR0559G190' => 'atr', 'ATR0693G294' => 'atr', 'Atru.chr3.3975' => 'acertr', 'Atru.chr3.3976' => 'acertr', 'Atru.chr3.3977' => 'acertr', 'Atru.chr4.2498' => 'acertr', 'Atru.chr5.838' => 'acertr', 'Atru.chr8.1990' => 'acertr', 'Atru.chr8.1991' => 'acertr', 'Atru.chr8.1992' => 'acertr', 'AUR62001759' => 'cqu', 'AUR62009545' => 'cqu', 'AUR62010474' => 'cqu', 'AUR62025820' => 'cqu', 'AUR62030422' => 'cqu', 'AUR62033605' => 'cqu', 'AUR62038615' => 'cqu', 'AUR62041347' => 'cqu', 'BcaB01g04574' => 'bca', 'BcaB02g09263' => 'bca', 'BcaB02g10453' => 'bca', 'BcaB05g22513' => 'bca', 'BcaB08g36253' => 'bca', 'BcaB08g36254' => 'bca', 'BcaC01g06519' => 'bca', 'BcaC02g11889' => 'bca', 'BcaC03g14010' => 'bca', 'BcaC03g18439' => 'bca', 'BcaC04g19765' => 'bca', 'BcaC09g48432' => 'bca', 'BcaNung07302' => 'bca', 'BolC2t06040H' => 'bol', 'BolC2t07346H' => 'bol', 'BolC3t13817H' => 'bol', 'BolC4t22625H' => 'bol', 'BolC4t23297H' => 'bol', 'BolC8t51278H' => 'bol', 'BolC9t58050H' => 'bol', 'BolC9t58051H' => 'bol', 'BolC9t60163H' => 'bol', 'BraA02t04712Z' => 'bra', 'BraA02t05791Z' => 'bra', 'BraA03t10483Z' => 'bra', 'BraA05t19795Z' => 'bra', 'BraA05t20276Z' => 'bra', 'BraA09t40827Z' => 'bra', 'BraA10t43750Z' => 'bra', 'BraA10t43751Z' => 'bra', 'BraA10t45370Z' => 'bra', 'C02p00400' => 'bna', 'C02p12460' => 'bna', 'C03p13680' => 'bna', 'C04p10270' => 'bna', 'C04p17500' => 'bna', 'C08p37010' => 'bna', 'C09p51880' => 'bna', 'C09p51890' => 'bna', 'C09p74300' => 'bna', 'CAN.G179.26' => 'can', 'CAN.G3384.1' => 'can', 'CAN.G394.68' => 'can', 'CAN.G907.13' => 'can', 'CANSAT11G0012' => 'cansat', 'CANSAT25G1586' => 'cansat', 'CANSAT35G0735' => 'cansat', 'CANSAT54G0556' => 'cansat', 'CANSAT64G0356' => 'cansat', 'CANSAT78G2042' => 'cansat', 'CARHR125920' => 'chi', 'CARHR131910' => 'chi', 'CARHR172390' => 'chi', 'CARHR211140' => 'chi', 'CARHR285850' => 'chi', 'CARHR285860' => 'chi', 'Carub.0004s1347' => 'cru', 'Carub.0004s1960' => 'cru', 'Carub.0005s2880' => 'cru', 'Carub.0006s0107' => 'cru', 'Carub.0008s2015' => 'cru', 'Carub.0008s2016' => 'cru', 'Carub.0008s2017' => 'cru', 'Ca_01315_v3' => 'car', 'Ca_05063_v3' => 'car', 'Ca_10231_v3' => 'car', 'Ca_10913_v3' => 'car', 'Ca_19156_v3' => 'car', 'Ca_23644_v3' => 'car', 'Ca_26735_v3' => 'car', 'Cc01_g13130' => 'ccan', 'Cc02_g21690' => 'ccan', 'Cc03_g03600' => 'ccan', 'Cc06_g02510' => 'ccan', 'CDE02G1265' => 'cde', 'CDE05G0415' => 'cde', 'CDE08G1082' => 'cde', 'Cfa005780' => 'cfa', 'Cfa011522' => 'cfa', 'Cfa011523' => 'cfa', 'Cfa015627' => 'cfa', 'Cfa017359' => 'cfa', 'Ciclev10005687m.g' => 'ccl', 'Ciclev10012173m.g' => 'ccl', 'Ciclev10021621m.g' => 'ccl', 'Ciclev10028968m.g' => 'ccl', 'Ciclev10029907m.g' => 'ccl', 'CiPaw.01G164800' => 'cil', 'CiPaw.07G083700' => 'cil', 'CiPaw.07G127000' => 'cil', 'CiPaw.07G136900' => 'cil', 'CiPaw.08G081700' => 'cil', 'CiPaw.09G194600' => 'cil', 'CiPaw.10G146500' => 'cil', 'CiPaw.13G091500' => 'cil', 'CiPaw.13G091600' => 'cil', 'ClCG00G003390' => 'cla', 'ClCG01G007220' => 'cla', 'ClCG03G001370' => 'cla', 'ClCG04G008100' => 'cla', 'ClCG06G006110' => 'cla', 'ClCG06G006130' => 'cla', 'ClCG10G021210' => 'cla', 'COL.COLO4_07648' => 'col', 'COL.COLO4_07650' => 'col', 'COL.COLO4_07651' => 'col', 'COL.COLO4_14780' => 'col', 'COL.COLO4_18546' => 'col', 'COL.COLO4_18547' => 'col', 'COL.COLO4_23103' => 'col', 'COL.COLO4_30419' => 'col', 'COL.COLO4_34232' => 'col', 'Cpa.g.sc169.20' => 'cpa', 'Cpa.g.sc57.45' => 'cpa', 'Cpa.g.sc58.124' => 'cpa', 'Cpa.g.sc58.125' => 'cpa', 'Cpa.g.sc81.118' => 'cpa', 'Cpa.g.sc81.119' => 'cpa', 'Cre12.g524700' => 'cre', 'CsaV3_1G034430' => 'csa', 'CsaV3_1G034440' => 'csa', 'CsaV3_1G034450' => 'csa', 'CsaV3_3G034830' => 'csa', 'CsaV3_4G025090' => 'csa', 'CsaV3_5G018660' => 'csa', 'CsaV3_6G038160' => 'csa', 'CSS0003447' => 'camsi', 'CSS0017840' => 'camsi', 'CSS0019260' => 'camsi', 'CSS0040375' => 'camsi', 'CSS0042533' => 'camsi', 'DCAR_005960' => 'dca', 'DCAR_012104' => 'dca', 'DCAR_012105' => 'dca', 'DCAR_012293' => 'dca', 'DCAR_015632' => 'dca', 'DCAR_024602' => 'dca', 'DCAR_028752' => 'dca', 'Dinv06261' => 'din', 'Dinv13982' => 'din', 'Dinv17029' => 'din', 'Dinv18463' => 'din', 'Dinv33181' => 'din', 'Dinv35585' => 'din', 'Dinv37161' => 'din', 'Dinv42977' => 'din', 'Dinv43122' => 'din', 'Dinv44517' => 'din', 'Duzib093G0256' => 'dzi', 'Duzib106G1254' => 'dzi', 'Duzib128G1789' => 'dzi', 'Duzib133G0633' => 'dzi', 'Duzib138G0510' => 'dzi', 'Duzib150G1084' => 'dzi', 'Duzib168G0488' => 'dzi', 'Duzib168G1523' => 'dzi', 'Duzib170G0133' => 'dzi', 'ECA234G1433' => 'eca', 'ECA236G1432' => 'eca', 'ECA236G2256' => 'eca', 'ECA236G2365' => 'eca', 'ECA236G4830' => 'eca', 'ECA248G1505' => 'eca', 'EL10Ac3g06431' => 'bvu', 'EL10Ac5g12577' => 'bvu', 'EL10Ac6g13533' => 'bvu', 'EL10Ac7g16045' => 'bvu', 'Eucgr.A01281' => 'egr', 'Eucgr.B02326' => 'egr', 'Eucgr.H03532' => 'egr', 'Eucgr.K00553' => 'egr', 'Eucgr.K03116' => 'egr', 'FAN02G3963' => 'fan', 'FAN05G0438' => 'fan', 'FAN09G2434' => 'fan', 'FAN12G3984' => 'fan', 'FAN14G0798' => 'fan', 'FAN17G0652' => 'fan', 'FAN19G1988' => 'fan', 'FAN22G0632' => 'fan', 'FAN23G0387' => 'fan', 'FAN26G1323' => 'fan', 'FAN28G0666' => 'fan', 'FvH4_1g26080' => 'fve', 'FvH4_3g36780' => 'fve', 'FvH4_4g15270' => 'fve', 'FvH4_6g13490' => 'fve', 'Glyma.01G098700' => 'gma', 'Glyma.03G065900' => 'gma', 'Glyma.03G073754' => 'gma', 'Glyma.03G073758' => 'gma', 'Glyma.03G083200' => 'gma', 'Glyma.03G225500' => 'gma', 'Glyma.05G037766' => 'gma', 'Glyma.07G133500' => 'gma', 'Glyma.10G139400' => 'gma', 'Glyma.10G248900' => 'gma', 'Glyma.11G137800' => 'gma', 'Glyma.12G061300' => 'gma', 'Glyma.13G337900' => 'gma', 'Glyma.15G036600' => 'gma', 'Glyma.18G182800' => 'gma', 'Glyma.19G222500' => 'gma', 'Glyma.20G144800' => 'gma', 'Gohir.A01G222000' => 'ghi', 'Gohir.A03G044000' => 'ghi', 'Gohir.A03G044100' => 'ghi', 'Gohir.A04G083100' => 'ghi', 'Gohir.A07G127200' => 'ghi', 'Gohir.A07G132400' => 'ghi', 'Gohir.A08G000700' => 'ghi', 'Gohir.A11G327300' => 'ghi', 'Gohir.D01G211500' => 'ghi', 'Gohir.D03G123400' => 'ghi', 'Gohir.D03G123500' => 'ghi', 'Gohir.D04G121800' => 'ghi', 'Gohir.D07G131500' => 'ghi', 'Gohir.D07G136600' => 'ghi', 'Gohir.D08G011600' => 'ghi', 'Gohir.D11G346200' => 'ghi', 'Gorai.001G142800' => 'gra', 'Gorai.001G148700' => 'gra', 'Gorai.002G257300' => 'gra', 'Gorai.003G130000' => 'gra', 'Gorai.003G130100' => 'gra', 'Gorai.004G005300' => 'gra', 'Gorai.007G376500' => 'gra', 'Gorai.012G104700' => 'gra', 'GSVIVG01017946001' => 'vvi', 'GSVIVG01024928001' => 'vvi', 'GSVIVG01028227001' => 'vvi', 'GSVIVG01034151001' => 'vvi', 'HanXRQChr05g0135031' => 'han', 'HanXRQChr05g0135041' => 'han', 'HanXRQChr05g0140021' => 'han', 'HanXRQChr06g0178981' => 'han', 'HanXRQChr07g0188251' => 'han', 'HanXRQChr08g0235311' => 'han', 'HanXRQChr09g0271011' => 'han', 'HanXRQChr10g0293321' => 'han', 'HanXRQChr13g0388171' => 'han', 'Haze_00916' => 'cav', 'Haze_05063' => 'cav', 'Haze_20814' => 'cav', 'Haze_24128' => 'cav', 'Hma1.2p1_0745F.1_g212010' => 'hma', 'Hma1.2p1_0757F.1_g213260' => 'hma', 'Hma1.2p1_0936F.1_g238840' => 'hma', 'Hma1.2p1_1735F.1_g299890' => 'hma', 'Hma1.2p1_1861F.1_g305685' => 'hma', 'HPP92_003397' => 'vpl', 'HPP92_012597' => 'vpl', 'HPP92_015520' => 'vpl', 'HPP92_015539' => 'vpl', 'HPP92_020373' => 'vpl', 'Hund04938' => 'sun', 'Hund10677' => 'sun', 'Hund11033' => 'sun', 'Hund12155' => 'sun', 'Lalb_Chr01g0022551' => 'lal', 'Lalb_Chr03g0042341' => 'lal', 'Lalb_Chr07g0192931' => 'lal', 'Lalb_Chr12g0209551' => 'lal', 'Lalb_Chr19g0125251' => 'lal', 'Lalb_Chr19g0137891' => 'lal', 'Lalb_Chr21g0304641' => 'lal', 'Lalb_Chr21g0309881' => 'lal', 'Lj1A5T12' => 'lonja', 'Lj1C148G10' => 'lonja', 'Lj2A93T83' => 'lonja', 'Lj3A738G68' => 'lonja', 'Lj3C966T1' => 'lonja', 'Lj3g0018958' => 'lja', 'Lj3g0021831' => 'lja', 'Lj3g0025443' => 'lja', 'Lj4g0026809' => 'lja', 'Lj5g0012558' => 'lja', 'Lj5g0021586' => 'lja', 'Lsat_1_v5_gn_5_156840' => 'lsa', 'Lsat_1_v5_gn_8_73460' => 'lsa', 'Lsat_1_v5_gn_8_73481' => 'lsa', 'Lsat_1_v5_gn_9_31601' => 'lsa', 'Lsat_1_v5_gn_9_77320' => 'lsa', 'Manes.01G171300' => 'mes', 'Manes.01G171400' => 'mes', 'Manes.01G236100' => 'mes', 'Manes.02G130500' => 'mes', 'Manes.02G130600' => 'mes', 'Manes.03G180200' => 'mes', 'Manes.05G007000' => 'mes', 'Manes.08G084400' => 'mes', 'Manes.09G092600' => 'mes', 'Manes.15G027900' => 'mes', 'MBI04_g40948_MAGBIO' => 'mbi', 'MBI14_g12123_MAGBIO' => 'mbi', 'MBI18_g28915_MAGBIO' => 'mbi', 'MCO09G053' => 'mco', 'MCO11G782' => 'mco', 'MCO15G215' => 'mco', 'MD03G1088500' => 'mdo', 'MD03G1088600' => 'mdo', 'MD04G1130800' => 'mdo', 'MD09G1291700' => 'mdo', 'MD11G1097500' => 'mdo', 'MD11G1097600' => 'mdo', 'MD12G1143900' => 'mdo', 'MD13G1191400' => 'mdo', 'MD16G1191500' => 'mdo', 'Medtr1g085570' => 'mtr', 'Medtr1g104610' => 'mtr', 'Medtr2g097520' => 'mtr', 'Medtr4g021800' => 'mtr', 'Medtr4g021825' => 'mtr', 'Medtr4g064270' => 'mtr', 'Medtr4g064380' => 'mtr', 'Medtr7g062150' => 'mtr', 'MELO3C003138.2' => 'cme', 'MELO3C005187.2' => 'cme', 'MELO3C009252.2' => 'cme', 'MELO3C014481.2' => 'cme', 'MELO3C020616.2' => 'cme', 'MELO3C020617.2' => 'cme', 'MELO3C020618.2' => 'cme', 'Migut.G00328' => 'egut', 'Migut.J00320' => 'egut', 'Migut.L01000' => 'egut', 'Migut.L01953' => 'egut', 'MSTRG.10253' => 'ama', 'MSTRG.19077' => 'ama', 'MSTRG.26780' => 'ama', 'MSTRG.4023' => 'ama', 'MSTRG.5655' => 'ama', 'MSTRG.9992' => 'ama', 'Nitab4.5_0000043g0310' => 'nta', 'Nitab4.5_0000463g0080' => 'nta', 'Nitab4.5_0000705g0170' => 'nta', 'Nitab4.5_0001326g0060' => 'nta', 'Nitab4.5_0001628g0030' => 'nta', 'Nitab4.5_0002103g0110' => 'nta', 'Nitab4.5_0002946g0030' => 'nta', 'Nitab4.5_0004639g0030' => 'nta', 'Nn2g11149' => 'nnu', 'Nn2g13389' => 'nnu', 'Nn4g25326' => 'nnu', 'Nn4g26290' => 'nnu', 'Nn5g29865' => 'nnu', 'Oeu004163.1' => 'oeu', 'Oeu006901.1' => 'oeu', 'Oeu010096.1' => 'oeu', 'Oeu024340.1' => 'oeu', 'Oeu048369.1' => 'oeu', 'Os01g0973000' => 'osa', 'Os03g0273800' => 'osa', 'Os03g0701200' => 'osa', 'Os03g0834050' => 'osa', 'Os07g0634400' => 'osa', 'Peaxi162Scf00092g01414' => 'pax', 'Peaxi162Scf00165g00818' => 'pax', 'Peaxi162Scf00309g00516' => 'pax', 'Peaxi162Scf00774g00218' => 'pax', 'PGR004G1824' => 'pgr', 'PGR004G2606' => 'pgr', 'PGR031G2716' => 'pgr', 'PGR102G2460' => 'pgr', 'PGR142G2599' => 'pgr', 'PGSC0003DMG400000843' => 'stu', 'PGSC0003DMG400008829' => 'stu', 'PGSC0003DMG400030418' => 'stu', 'PGSC0003DMG400031834' => 'stu', 'PGSC0003DMG401028300' => 'stu', 'PGSC0003DMG402028300' => 'stu', 'Phvul.001G219300' => 'pvu', 'Phvul.007G056000' => 'pvu', 'Phvul.007G208000' => 'pvu', 'Phvul.008G119500' => 'pvu', 'Phvul.010G011200' => 'pvu', 'Phvul.010G014800' => 'pvu', 'Phvul.011G062900' => 'pvu', 'Phvul.L007043' => 'pvu', 'Potri.001G242300' => 'ptr', 'Potri.002G185300' => 'ptr', 'Potri.006G086900' => 'ptr', 'Potri.008G151700' => 'ptr', 'Potri.009G033500' => 'ptr', 'Potri.010G089300' => 'ptr', 'Potri.014G110800' => 'ptr', 'Pp3c27_8130' => 'ppa', 'Pp3c6_27410' => 'ppa', 'PRCOL_00001659' => 'pco', 'PRCOL_00001927' => 'pco', 'PRCOL_00003649' => 'pco', 'Prupe.1G011600' => 'ppe', 'Prupe.3G000800' => 'ppe', 'Prupe.3G001100' => 'ppe', 'Prupe.6G072700' => 'ppe', 'Prupe.6G072800' => 'ppe', 'Prupe.6G257300' => 'ppe', 'Prupe.8G033000' => 'ppe', 'Psat0s2633g0080' => 'psa', 'Psat0s3396g0080' => 'psa', 'Psat0s3396g0200' => 'psa', 'Psat3g139080' => 'psa', 'Psat5g285080' => 'psa', 'Psat6g157760' => 'psa', 'Psat6g208440' => 'psa', 'Psat7g215320' => 'psa', 'Psat7g215400' => 'psa', 'Psat7g235600' => 'psa', 'Psat7g235760' => 'psa', 'PSO063G4603' => 'pso', 'PSO210G0182' => 'pso', 'PSO210G0196' => 'pso', 'PSO339G0394' => 'pso', 'PSO339G4127' => 'pso', 'PSO513G0064' => 'pso', 'PSO761G0079' => 'pso', 'QL01p031003' => 'qlo', 'QL01p031078' => 'qlo', 'QL06p003004' => 'qlo', 'QL07p048731' => 'qlo', 'QL09p037427' => 'qlo', 'RcHm_v2.0_Chr3g0466361' => 'rch', 'RcHm_v2.0_Chr3g0485571' => 'rch', 'RcHm_v2.0_Chr4g0416551' => 'rch', 'RcHm_v2.0_Chr5g0065831' => 'rch', 'Rhsim01G0230500' => 'rsi', 'Rhsim05G0194000' => 'rsi', 'Rhsim08G0250400' => 'rsi', 'Sabra02G0131000' => 'sbr', 'Sabra06G0066300' => 'sbr', 'Sabra08G0115500' => 'sbr', 'Sabra09G0023900' => 'sbr', 'Sabra10G0054000' => 'sbr', 'Sabra14G0081500' => 'sbr', 'Sabra16G0147100' => 'sbr', 'SalBow2G2957' => 'sbo', 'SalBow4G3320' => 'sbo', 'SalBow8G1894' => 'sbo', 'Sc07g0007950' => 'sci', 'Sc12g0001360' => 'sci', 'Sc13g0004330' => 'sci', 'Sc20g0005010' => 'sci', 'Sed0000361' => 'sed', 'Sed0001706' => 'sed', 'Sed0002422' => 'sed', 'Sed0004029' => 'sed', 'Sed0004602' => 'sed', 'Sed0004943' => 'sed', 'Sed0008646' => 'sed', 'Sed0023313' => 'sed', 'Sed0024843' => 'sed', 'SEGI_00081' => 'sgi', 'SEGI_00947' => 'sgi', 'SEGI_04046' => 'sgi', 'SEGI_06880' => 'sgi', 'SEGI_09736' => 'sgi', 'SEGI_12741' => 'sgi', 'SEGI_14530' => 'sgi', 'SEGI_20705' => 'sgi', 'SEGI_26088' => 'sgi', 'SEGI_28323' => 'sgi', 'SEGI_33343' => 'sgi', 'SGA_v2.0_scaffold126G33775' => 'sas', 'SGA_v2.0_scaffold2G01337' => 'sas', 'SGA_v2.0_scaffold38G15006' => 'sas', 'SGA_v2.0_scaffold39G15264' => 'sas', 'SGA_v2.0_scaffold453G51880' => 'sas', 'SHI12696' => 'shi', 'SMO367G1096' => 'smo', 'Solyc01g068630.3' => 'sly', 'Solyc05g011880.3' => 'sly', 'Solyc06g076300.3' => 'sly', 'Solyc09g010940.4' => 'sly', 'Solyc09g075890.3' => 'sly', 'Sopen01g030560' => 'spe', 'Sopen05g006630' => 'spe', 'Sopen06g032720' => 'spe', 'Sopen09g005660' => 'spe', 'Sopen09g030690' => 'spe', 'Sp4g14540' => 'spa', 'Sp4g20030' => 'spa', 'Sp5g01320' => 'spa', 'Sp6g21170' => 'spa', 'Sp6g21180' => 'spa', 'Sp6g21190' => 'spa', 'Sp6g40220' => 'spa', 'TAR362G0122' => 'tar', 'TAR362G1338' => 'tar', 'TAR369G0590' => 'tar', 'TAR371G0824' => 'tar', 'TAR622G1429' => 'tar', 'TAR623G0734' => 'tar', 'TAR625G0441' => 'tar', 'TAR629G0976' => 'tar', 'TAR633G1195' => 'tar', 'TAR636G2660' => 'tar', 'THA.LOC104799440' => 'tha', 'THA.LOC104800966' => 'tha', 'THA.LOC104806559' => 'tha', 'THA.LOC104810765' => 'tha', 'THA.LOC104816266' => 'tha', 'THA.LOC104817419' => 'tha', 'THA.LOC104827021' => 'tha', 'Thecc.01G327400' => 'tca', 'Thecc.04G229200' => 'tca', 'Thecc.05G037400' => 'tca', 'Thecc.09G318600' => 'tca', 'Thecc.09G318700' => 'tca', 'Thhalv10006238m.g' => 'esa', 'Thhalv10014321m.g' => 'esa', 'Thhalv10014335m.g' => 'esa', 'Thhalv10015826m.g' => 'esa', 'Thhalv10017107m.g' => 'esa', 'Thhalv10017180m.g' => 'esa', 'Thhalv10029339m.g' => 'esa', 'TPR.G1699' => 'tpr', 'TPR.G23609' => 'tpr', 'TPR.G3081' => 'tpr', 'TPR.G40397' => 'tpr', 'TPR.G5522' => 'tpr', 'TPR.G5618' => 'tpr', 'TPR.G5626' => 'tpr', 'TWI09G1632' => 'twi', 'TWI23G1230' => 'twi', 'TWI53G1064' => 'twi', 'TWI59G0751' => 'twi', 'TWI74G0947' => 'twi', 'TWI77G0337' => 'twi', 'TWI79G1254' => 'twi', 'unitig_0.g2341' => 'ugi', 'unitig_26.g10006' => 'ugi', 'unitig_26.g10008' => 'ugi', 'unitig_26.g9192' => 'ugi', 'vmacro14547' => 'vma', 'vmacro15333' => 'vma', 'vmacro18743' => 'vma', 'vmacro20166' => 'vma', 'VMungo0331G0523' => 'vmu', 'VMungo0331G1202' => 'vmu', 'VMungo0720G1228' => 'vmu', 'VMungo0720G1514' => 'vmu', 'VMungo1080G0169' => 'vmu', 'VMungo1127G1475' => 'vmu', 'VMungo1383G1208' => 'vmu', 'VMungo1383G1698' => 'vmu', 'Zm00001eb012270' => 'zma', 'Zm00001eb054100' => 'zma', 'Zm00001eb063350' => 'zma', 'Zm00001eb328560' => 'zma', 'Zm00001eb342820' => 'zma', 'Zm00001eb362210' => 'zma', 'Zm00001eb397730' => 'zma', 'Zm00001eb399750' => 'zma' ) $gf_id = 'HOM05D000959' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000959' ) $data_identifier = 'HOM05D000959' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 5, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 5, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 10, 'mbi' => (int) 3, 'mco' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 2, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 3, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 11, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399750' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000959', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '622', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p07100' => 'bna', 'A03p11720' => 'bna', 'A05p08300' => 'bna', 'A05p13380' => 'bna', 'A09p54130' => 'bna', 'A10p16690' => 'bna', 'A10p16700' => 'bna', 'A10p33390' => 'bna', 'Aa31LG10G16020' => 'aar', 'Aa31LG1G11810' => 'aar', 'Aa31LG1G11830' => 'aar', 'Aa31LG1G22510' => 'aar', 'Aa31LG5G4890' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5793' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2310' => 'aag', 'Actinidia08499' => 'ach', 'Actinidia11262' => 'ach', 'Actinidia23926' => 'ach', 'Actinidia34420' => 'ach', 'Actinidia36970' => 'ach', 'Ah.02g111220' => 'amhyb', 'Ah.15g097750' => 'amhyb', 'AL4G27500' => 'aly', 'AL6G11470' => 'aly', 'AL8G35950' => 'aly', 'AL8G35960' => 'aly', 'AL8G35970' => 'aly', 'Aqoxy1G00912' => 'aox', 'Aqoxy2G02253' => 'aox', 'Aqoxy2G02411' => 'aox', 'Aqoxy5G00485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BZ66YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K8ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM4FUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6BF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HFV7XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25JBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0YNNV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MAKK6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P70IT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP2Z6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V61LZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YWP64R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3S9AI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7PGHH' => 'arhy', 'AT2G32150' => 'ath', 'AT3G62040' => 'ath', 'AT5G02230' => 'ath', 'AT5G59480' => 'ath', 'AT5G59490' => 'ath', 'ATR0332G060' => 'atr', 'ATR0559G190' => 'atr', 'ATR0693G294' => 'atr', 'Atru.chr3.3975' => 'acertr', 'Atru.chr3.3976' => 'acertr', 'Atru.chr3.3977' => 'acertr', 'Atru.chr4.2498' => 'acertr', 'Atru.chr5.838' => 'acertr', 'Atru.chr8.1990' => 'acertr', 'Atru.chr8.1991' => 'acertr', 'Atru.chr8.1992' => 'acertr', 'AUR62001759' => 'cqu', 'AUR62009545' => 'cqu', 'AUR62010474' => 'cqu', 'AUR62025820' => 'cqu', 'AUR62030422' => 'cqu', 'AUR62033605' => 'cqu', 'AUR62038615' => 'cqu', 'AUR62041347' => 'cqu', 'BcaB01g04574' => 'bca', 'BcaB02g09263' => 'bca', 'BcaB02g10453' => 'bca', 'BcaB05g22513' => 'bca', 'BcaB08g36253' => 'bca', 'BcaB08g36254' => 'bca', 'BcaC01g06519' => 'bca', 'BcaC02g11889' => 'bca', 'BcaC03g14010' => 'bca', 'BcaC03g18439' => 'bca', 'BcaC04g19765' => 'bca', 'BcaC09g48432' => 'bca', 'BcaNung07302' => 'bca', 'BolC2t06040H' => 'bol', 'BolC2t07346H' => 'bol', 'BolC3t13817H' => 'bol', 'BolC4t22625H' => 'bol', 'BolC4t23297H' => 'bol', 'BolC8t51278H' => 'bol', 'BolC9t58050H' => 'bol', 'BolC9t58051H' => 'bol', 'BolC9t60163H' => 'bol', 'BraA02t04712Z' => 'bra', 'BraA02t05791Z' => 'bra', 'BraA03t10483Z' => 'bra', 'BraA05t19795Z' => 'bra', 'BraA05t20276Z' => 'bra', 'BraA09t40827Z' => 'bra', 'BraA10t43750Z' => 'bra', 'BraA10t43751Z' => 'bra', 'BraA10t45370Z' => 'bra', 'C02p00400' => 'bna', 'C02p12460' => 'bna', 'C03p13680' => 'bna', 'C04p10270' => 'bna', 'C04p17500' => 'bna', 'C08p37010' => 'bna', 'C09p51880' => 'bna', 'C09p51890' => 'bna', 'C09p74300' => 'bna', 'CAN.G179.26' => 'can', 'CAN.G3384.1' => 'can', 'CAN.G394.68' => 'can', 'CAN.G907.13' => 'can', 'CANSAT11G0012' => 'cansat', 'CANSAT25G1586' => 'cansat', 'CANSAT35G0735' => 'cansat', 'CANSAT54G0556' => 'cansat', 'CANSAT64G0356' => 'cansat', 'CANSAT78G2042' => 'cansat', 'CARHR125920' => 'chi', 'CARHR131910' => 'chi', 'CARHR172390' => 'chi', 'CARHR211140' => 'chi', 'CARHR285850' => 'chi', 'CARHR285860' => 'chi', 'Carub.0004s1347' => 'cru', 'Carub.0004s1960' => 'cru', 'Carub.0005s2880' => 'cru', 'Carub.0006s0107' => 'cru', 'Carub.0008s2015' => 'cru', 'Carub.0008s2016' => 'cru', 'Carub.0008s2017' => 'cru', 'Ca_01315_v3' => 'car', 'Ca_05063_v3' => 'car', 'Ca_10231_v3' => 'car', 'Ca_10913_v3' => 'car', 'Ca_19156_v3' => 'car', 'Ca_23644_v3' => 'car', 'Ca_26735_v3' => 'car', 'Cc01_g13130' => 'ccan', 'Cc02_g21690' => 'ccan', 'Cc03_g03600' => 'ccan', 'Cc06_g02510' => 'ccan', 'CDE02G1265' => 'cde', 'CDE05G0415' => 'cde', 'CDE08G1082' => 'cde', 'Cfa005780' => 'cfa', 'Cfa011522' => 'cfa', 'Cfa011523' => 'cfa', 'Cfa015627' => 'cfa', 'Cfa017359' => 'cfa', 'Ciclev10005687m.g' => 'ccl', 'Ciclev10012173m.g' => 'ccl', 'Ciclev10021621m.g' => 'ccl', 'Ciclev10028968m.g' => 'ccl', 'Ciclev10029907m.g' => 'ccl', 'CiPaw.01G164800' => 'cil', 'CiPaw.07G083700' => 'cil', 'CiPaw.07G127000' => 'cil', 'CiPaw.07G136900' => 'cil', 'CiPaw.08G081700' => 'cil', 'CiPaw.09G194600' => 'cil', 'CiPaw.10G146500' => 'cil', 'CiPaw.13G091500' => 'cil', 'CiPaw.13G091600' => 'cil', 'ClCG00G003390' => 'cla', 'ClCG01G007220' => 'cla', 'ClCG03G001370' => 'cla', 'ClCG04G008100' => 'cla', 'ClCG06G006110' => 'cla', 'ClCG06G006130' => 'cla', 'ClCG10G021210' => 'cla', 'COL.COLO4_07648' => 'col', 'COL.COLO4_07650' => 'col', 'COL.COLO4_07651' => 'col', 'COL.COLO4_14780' => 'col', 'COL.COLO4_18546' => 'col', 'COL.COLO4_18547' => 'col', 'COL.COLO4_23103' => 'col', 'COL.COLO4_30419' => 'col', 'COL.COLO4_34232' => 'col', 'Cpa.g.sc169.20' => 'cpa', 'Cpa.g.sc57.45' => 'cpa', 'Cpa.g.sc58.124' => 'cpa', 'Cpa.g.sc58.125' => 'cpa', 'Cpa.g.sc81.118' => 'cpa', 'Cpa.g.sc81.119' => 'cpa', 'Cre12.g524700' => 'cre', 'CsaV3_1G034430' => 'csa', 'CsaV3_1G034440' => 'csa', 'CsaV3_1G034450' => 'csa', 'CsaV3_3G034830' => 'csa', 'CsaV3_4G025090' => 'csa', 'CsaV3_5G018660' => 'csa', 'CsaV3_6G038160' => 'csa', 'CSS0003447' => 'camsi', 'CSS0017840' => 'camsi', 'CSS0019260' => 'camsi', 'CSS0040375' => 'camsi', 'CSS0042533' => 'camsi', 'DCAR_005960' => 'dca', 'DCAR_012104' => 'dca', 'DCAR_012105' => 'dca', 'DCAR_012293' => 'dca', 'DCAR_015632' => 'dca', 'DCAR_024602' => 'dca', 'DCAR_028752' => 'dca', 'Dinv06261' => 'din', 'Dinv13982' => 'din', 'Dinv17029' => 'din', 'Dinv18463' => 'din', 'Dinv33181' => 'din', 'Dinv35585' => 'din', 'Dinv37161' => 'din', 'Dinv42977' => 'din', 'Dinv43122' => 'din', 'Dinv44517' => 'din', 'Duzib093G0256' => 'dzi', 'Duzib106G1254' => 'dzi', 'Duzib128G1789' => 'dzi', 'Duzib133G0633' => 'dzi', 'Duzib138G0510' => 'dzi', 'Duzib150G1084' => 'dzi', 'Duzib168G0488' => 'dzi', 'Duzib168G1523' => 'dzi', 'Duzib170G0133' => 'dzi', 'ECA234G1433' => 'eca', 'ECA236G1432' => 'eca', 'ECA236G2256' => 'eca', 'ECA236G2365' => 'eca', 'ECA236G4830' => 'eca', 'ECA248G1505' => 'eca', 'EL10Ac3g06431' => 'bvu', 'EL10Ac5g12577' => 'bvu', 'EL10Ac6g13533' => 'bvu', 'EL10Ac7g16045' => 'bvu', 'Eucgr.A01281' => 'egr', 'Eucgr.B02326' => 'egr', 'Eucgr.H03532' => 'egr', 'Eucgr.K00553' => 'egr', 'Eucgr.K03116' => 'egr', 'FAN02G3963' => 'fan', 'FAN05G0438' => 'fan', 'FAN09G2434' => 'fan', 'FAN12G3984' => 'fan', 'FAN14G0798' => 'fan', 'FAN17G0652' => 'fan', 'FAN19G1988' => 'fan', 'FAN22G0632' => 'fan', 'FAN23G0387' => 'fan', 'FAN26G1323' => 'fan', 'FAN28G0666' => 'fan', 'FvH4_1g26080' => 'fve', 'FvH4_3g36780' => 'fve', 'FvH4_4g15270' => 'fve', 'FvH4_6g13490' => 'fve', 'Glyma.01G098700' => 'gma', 'Glyma.03G065900' => 'gma', 'Glyma.03G073754' => 'gma', 'Glyma.03G073758' => 'gma', 'Glyma.03G083200' => 'gma', 'Glyma.03G225500' => 'gma', 'Glyma.05G037766' => 'gma', 'Glyma.07G133500' => 'gma', 'Glyma.10G139400' => 'gma', 'Glyma.10G248900' => 'gma', 'Glyma.11G137800' => 'gma', 'Glyma.12G061300' => 'gma', 'Glyma.13G337900' => 'gma', 'Glyma.15G036600' => 'gma', 'Glyma.18G182800' => 'gma', 'Glyma.19G222500' => 'gma', 'Glyma.20G144800' => 'gma', 'Gohir.A01G222000' => 'ghi', 'Gohir.A03G044000' => 'ghi', 'Gohir.A03G044100' => 'ghi', 'Gohir.A04G083100' => 'ghi', 'Gohir.A07G127200' => 'ghi', 'Gohir.A07G132400' => 'ghi', 'Gohir.A08G000700' => 'ghi', 'Gohir.A11G327300' => 'ghi', 'Gohir.D01G211500' => 'ghi', 'Gohir.D03G123400' => 'ghi', 'Gohir.D03G123500' => 'ghi', 'Gohir.D04G121800' => 'ghi', 'Gohir.D07G131500' => 'ghi', 'Gohir.D07G136600' => 'ghi', 'Gohir.D08G011600' => 'ghi', 'Gohir.D11G346200' => 'ghi', 'Gorai.001G142800' => 'gra', 'Gorai.001G148700' => 'gra', 'Gorai.002G257300' => 'gra', 'Gorai.003G130000' => 'gra', 'Gorai.003G130100' => 'gra', 'Gorai.004G005300' => 'gra', 'Gorai.007G376500' => 'gra', 'Gorai.012G104700' => 'gra', 'GSVIVG01017946001' => 'vvi', 'GSVIVG01024928001' => 'vvi', 'GSVIVG01028227001' => 'vvi', 'GSVIVG01034151001' => 'vvi', 'HanXRQChr05g0135031' => 'han', 'HanXRQChr05g0135041' => 'han', 'HanXRQChr05g0140021' => 'han', 'HanXRQChr06g0178981' => 'han', 'HanXRQChr07g0188251' => 'han', 'HanXRQChr08g0235311' => 'han', 'HanXRQChr09g0271011' => 'han', 'HanXRQChr10g0293321' => 'han', 'HanXRQChr13g0388171' => 'han', 'Haze_00916' => 'cav', 'Haze_05063' => 'cav', 'Haze_20814' => 'cav', 'Haze_24128' => 'cav', 'Hma1.2p1_0745F.1_g212010' => 'hma', 'Hma1.2p1_0757F.1_g213260' => 'hma', 'Hma1.2p1_0936F.1_g238840' => 'hma', 'Hma1.2p1_1735F.1_g299890' => 'hma', 'Hma1.2p1_1861F.1_g305685' => 'hma', 'HPP92_003397' => 'vpl', 'HPP92_012597' => 'vpl', 'HPP92_015520' => 'vpl', 'HPP92_015539' => 'vpl', 'HPP92_020373' => 'vpl', 'Hund04938' => 'sun', 'Hund10677' => 'sun', 'Hund11033' => 'sun', 'Hund12155' => 'sun', 'Lalb_Chr01g0022551' => 'lal', 'Lalb_Chr03g0042341' => 'lal', 'Lalb_Chr07g0192931' => 'lal', 'Lalb_Chr12g0209551' => 'lal', 'Lalb_Chr19g0125251' => 'lal', 'Lalb_Chr19g0137891' => 'lal', 'Lalb_Chr21g0304641' => 'lal', 'Lalb_Chr21g0309881' => 'lal', 'Lj1A5T12' => 'lonja', 'Lj1C148G10' => 'lonja', 'Lj2A93T83' => 'lonja', 'Lj3A738G68' => 'lonja', 'Lj3C966T1' => 'lonja', 'Lj3g0018958' => 'lja', 'Lj3g0021831' => 'lja', 'Lj3g0025443' => 'lja', 'Lj4g0026809' => 'lja', 'Lj5g0012558' => 'lja', 'Lj5g0021586' => 'lja', 'Lsat_1_v5_gn_5_156840' => 'lsa', 'Lsat_1_v5_gn_8_73460' => 'lsa', 'Lsat_1_v5_gn_8_73481' => 'lsa', 'Lsat_1_v5_gn_9_31601' => 'lsa', 'Lsat_1_v5_gn_9_77320' => 'lsa', 'Manes.01G171300' => 'mes', 'Manes.01G171400' => 'mes', 'Manes.01G236100' => 'mes', 'Manes.02G130500' => 'mes', 'Manes.02G130600' => 'mes', 'Manes.03G180200' => 'mes', 'Manes.05G007000' => 'mes', 'Manes.08G084400' => 'mes', 'Manes.09G092600' => 'mes', 'Manes.15G027900' => 'mes', 'MBI04_g40948_MAGBIO' => 'mbi', 'MBI14_g12123_MAGBIO' => 'mbi', 'MBI18_g28915_MAGBIO' => 'mbi', 'MCO09G053' => 'mco', 'MCO11G782' => 'mco', 'MCO15G215' => 'mco', 'MD03G1088500' => 'mdo', 'MD03G1088600' => 'mdo', 'MD04G1130800' => 'mdo', 'MD09G1291700' => 'mdo', 'MD11G1097500' => 'mdo', 'MD11G1097600' => 'mdo', 'MD12G1143900' => 'mdo', 'MD13G1191400' => 'mdo', 'MD16G1191500' => 'mdo', 'Medtr1g085570' => 'mtr', 'Medtr1g104610' => 'mtr', 'Medtr2g097520' => 'mtr', 'Medtr4g021800' => 'mtr', 'Medtr4g021825' => 'mtr', 'Medtr4g064270' => 'mtr', 'Medtr4g064380' => 'mtr', 'Medtr7g062150' => 'mtr', 'MELO3C003138.2' => 'cme', 'MELO3C005187.2' => 'cme', 'MELO3C009252.2' => 'cme', 'MELO3C014481.2' => 'cme', 'MELO3C020616.2' => 'cme', 'MELO3C020617.2' => 'cme', 'MELO3C020618.2' => 'cme', 'Migut.G00328' => 'egut', 'Migut.J00320' => 'egut', 'Migut.L01000' => 'egut', 'Migut.L01953' => 'egut', 'MSTRG.10253' => 'ama', 'MSTRG.19077' => 'ama', 'MSTRG.26780' => 'ama', 'MSTRG.4023' => 'ama', 'MSTRG.5655' => 'ama', 'MSTRG.9992' => 'ama', 'Nitab4.5_0000043g0310' => 'nta', 'Nitab4.5_0000463g0080' => 'nta', 'Nitab4.5_0000705g0170' => 'nta', 'Nitab4.5_0001326g0060' => 'nta', 'Nitab4.5_0001628g0030' => 'nta', 'Nitab4.5_0002103g0110' => 'nta', 'Nitab4.5_0002946g0030' => 'nta', 'Nitab4.5_0004639g0030' => 'nta', 'Nn2g11149' => 'nnu', 'Nn2g13389' => 'nnu', 'Nn4g25326' => 'nnu', 'Nn4g26290' => 'nnu', 'Nn5g29865' => 'nnu', 'Oeu004163.1' => 'oeu', 'Oeu006901.1' => 'oeu', 'Oeu010096.1' => 'oeu', 'Oeu024340.1' => 'oeu', 'Oeu048369.1' => 'oeu', 'Os01g0973000' => 'osa', 'Os03g0273800' => 'osa', 'Os03g0701200' => 'osa', 'Os03g0834050' => 'osa', 'Os07g0634400' => 'osa', 'Peaxi162Scf00092g01414' => 'pax', 'Peaxi162Scf00165g00818' => 'pax', 'Peaxi162Scf00309g00516' => 'pax', 'Peaxi162Scf00774g00218' => 'pax', 'PGR004G1824' => 'pgr', 'PGR004G2606' => 'pgr', 'PGR031G2716' => 'pgr', 'PGR102G2460' => 'pgr', 'PGR142G2599' => 'pgr', 'PGSC0003DMG400000843' => 'stu', 'PGSC0003DMG400008829' => 'stu', 'PGSC0003DMG400030418' => 'stu', 'PGSC0003DMG400031834' => 'stu', 'PGSC0003DMG401028300' => 'stu', 'PGSC0003DMG402028300' => 'stu', 'Phvul.001G219300' => 'pvu', 'Phvul.007G056000' => 'pvu', 'Phvul.007G208000' => 'pvu', 'Phvul.008G119500' => 'pvu', 'Phvul.010G011200' => 'pvu', 'Phvul.010G014800' => 'pvu', 'Phvul.011G062900' => 'pvu', 'Phvul.L007043' => 'pvu', 'Potri.001G242300' => 'ptr', 'Potri.002G185300' => 'ptr', 'Potri.006G086900' => 'ptr', 'Potri.008G151700' => 'ptr', 'Potri.009G033500' => 'ptr', 'Potri.010G089300' => 'ptr', 'Potri.014G110800' => 'ptr', 'Pp3c27_8130' => 'ppa', 'Pp3c6_27410' => 'ppa', 'PRCOL_00001659' => 'pco', 'PRCOL_00001927' => 'pco', 'PRCOL_00003649' => 'pco', 'Prupe.1G011600' => 'ppe', 'Prupe.3G000800' => 'ppe', 'Prupe.3G001100' => 'ppe', 'Prupe.6G072700' => 'ppe', 'Prupe.6G072800' => 'ppe', 'Prupe.6G257300' => 'ppe', 'Prupe.8G033000' => 'ppe', 'Psat0s2633g0080' => 'psa', 'Psat0s3396g0080' => 'psa', 'Psat0s3396g0200' => 'psa', 'Psat3g139080' => 'psa', 'Psat5g285080' => 'psa', 'Psat6g157760' => 'psa', 'Psat6g208440' => 'psa', 'Psat7g215320' => 'psa', 'Psat7g215400' => 'psa', 'Psat7g235600' => 'psa', 'Psat7g235760' => 'psa', 'PSO063G4603' => 'pso', 'PSO210G0182' => 'pso', 'PSO210G0196' => 'pso', 'PSO339G0394' => 'pso', 'PSO339G4127' => 'pso', 'PSO513G0064' => 'pso', 'PSO761G0079' => 'pso', 'QL01p031003' => 'qlo', 'QL01p031078' => 'qlo', 'QL06p003004' => 'qlo', 'QL07p048731' => 'qlo', 'QL09p037427' => 'qlo', 'RcHm_v2.0_Chr3g0466361' => 'rch', 'RcHm_v2.0_Chr3g0485571' => 'rch', 'RcHm_v2.0_Chr4g0416551' => 'rch', 'RcHm_v2.0_Chr5g0065831' => 'rch', 'Rhsim01G0230500' => 'rsi', 'Rhsim05G0194000' => 'rsi', 'Rhsim08G0250400' => 'rsi', 'Sabra02G0131000' => 'sbr', 'Sabra06G0066300' => 'sbr', 'Sabra08G0115500' => 'sbr', 'Sabra09G0023900' => 'sbr', 'Sabra10G0054000' => 'sbr', 'Sabra14G0081500' => 'sbr', 'Sabra16G0147100' => 'sbr', 'SalBow2G2957' => 'sbo', 'SalBow4G3320' => 'sbo', 'SalBow8G1894' => 'sbo', 'Sc07g0007950' => 'sci', 'Sc12g0001360' => 'sci', 'Sc13g0004330' => 'sci', 'Sc20g0005010' => 'sci', 'Sed0000361' => 'sed', 'Sed0001706' => 'sed', 'Sed0002422' => 'sed', 'Sed0004029' => 'sed', 'Sed0004602' => 'sed', 'Sed0004943' => 'sed', 'Sed0008646' => 'sed', 'Sed0023313' => 'sed', 'Sed0024843' => 'sed', 'SEGI_00081' => 'sgi', 'SEGI_00947' => 'sgi', 'SEGI_04046' => 'sgi', 'SEGI_06880' => 'sgi', 'SEGI_09736' => 'sgi', 'SEGI_12741' => 'sgi', 'SEGI_14530' => 'sgi', 'SEGI_20705' => 'sgi', 'SEGI_26088' => 'sgi', 'SEGI_28323' => 'sgi', 'SEGI_33343' => 'sgi', 'SGA_v2.0_scaffold126G33775' => 'sas', 'SGA_v2.0_scaffold2G01337' => 'sas', 'SGA_v2.0_scaffold38G15006' => 'sas', 'SGA_v2.0_scaffold39G15264' => 'sas', 'SGA_v2.0_scaffold453G51880' => 'sas', 'SHI12696' => 'shi', 'SMO367G1096' => 'smo', 'Solyc01g068630.3' => 'sly', 'Solyc05g011880.3' => 'sly', 'Solyc06g076300.3' => 'sly', 'Solyc09g010940.4' => 'sly', 'Solyc09g075890.3' => 'sly', 'Sopen01g030560' => 'spe', 'Sopen05g006630' => 'spe', 'Sopen06g032720' => 'spe', 'Sopen09g005660' => 'spe', 'Sopen09g030690' => 'spe', 'Sp4g14540' => 'spa', 'Sp4g20030' => 'spa', 'Sp5g01320' => 'spa', 'Sp6g21170' => 'spa', 'Sp6g21180' => 'spa', 'Sp6g21190' => 'spa', 'Sp6g40220' => 'spa', 'TAR362G0122' => 'tar', 'TAR362G1338' => 'tar', 'TAR369G0590' => 'tar', 'TAR371G0824' => 'tar', 'TAR622G1429' => 'tar', 'TAR623G0734' => 'tar', 'TAR625G0441' => 'tar', 'TAR629G0976' => 'tar', 'TAR633G1195' => 'tar', 'TAR636G2660' => 'tar', 'THA.LOC104799440' => 'tha', 'THA.LOC104800966' => 'tha', 'THA.LOC104806559' => 'tha', 'THA.LOC104810765' => 'tha', 'THA.LOC104816266' => 'tha', 'THA.LOC104817419' => 'tha', 'THA.LOC104827021' => 'tha', 'Thecc.01G327400' => 'tca', 'Thecc.04G229200' => 'tca', 'Thecc.05G037400' => 'tca', 'Thecc.09G318600' => 'tca', 'Thecc.09G318700' => 'tca', 'Thhalv10006238m.g' => 'esa', 'Thhalv10014321m.g' => 'esa', 'Thhalv10014335m.g' => 'esa', 'Thhalv10015826m.g' => 'esa', 'Thhalv10017107m.g' => 'esa', 'Thhalv10017180m.g' => 'esa', 'Thhalv10029339m.g' => 'esa', 'TPR.G1699' => 'tpr', 'TPR.G23609' => 'tpr', 'TPR.G3081' => 'tpr', 'TPR.G40397' => 'tpr', 'TPR.G5522' => 'tpr', 'TPR.G5618' => 'tpr', 'TPR.G5626' => 'tpr', 'TWI09G1632' => 'twi', 'TWI23G1230' => 'twi', 'TWI53G1064' => 'twi', 'TWI59G0751' => 'twi', 'TWI74G0947' => 'twi', 'TWI77G0337' => 'twi', 'TWI79G1254' => 'twi', 'unitig_0.g2341' => 'ugi', 'unitig_26.g10006' => 'ugi', 'unitig_26.g10008' => 'ugi', 'unitig_26.g9192' => 'ugi', 'vmacro14547' => 'vma', 'vmacro15333' => 'vma', 'vmacro18743' => 'vma', 'vmacro20166' => 'vma', 'VMungo0331G0523' => 'vmu', 'VMungo0331G1202' => 'vmu', 'VMungo0720G1228' => 'vmu', 'VMungo0720G1514' => 'vmu', 'VMungo1080G0169' => 'vmu', 'VMungo1127G1475' => 'vmu', 'VMungo1383G1208' => 'vmu', 'VMungo1383G1698' => 'vmu', 'Zm00001eb012270' => 'zma', 'Zm00001eb054100' => 'zma', 'Zm00001eb063350' => 'zma', 'Zm00001eb328560' => 'zma', 'Zm00001eb342820' => 'zma', 'Zm00001eb362210' => 'zma', 'Zm00001eb397730' => 'zma', 'Zm00001eb399750' => 'zma' ), 'gf_id' => 'HOM05D000959', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000959' ), 'data_identifier' => 'HOM05D000959', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000959', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '622', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p07100' => 'bna', 'A03p11720' => 'bna', 'A05p08300' => 'bna', 'A05p13380' => 'bna', 'A09p54130' => 'bna', 'A10p16690' => 'bna', 'A10p16700' => 'bna', 'A10p33390' => 'bna', 'Aa31LG10G16020' => 'aar', 'Aa31LG1G11810' => 'aar', 'Aa31LG1G11830' => 'aar', 'Aa31LG1G22510' => 'aar', 'Aa31LG5G4890' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5793' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2310' => 'aag', 'Actinidia08499' => 'ach', 'Actinidia11262' => 'ach', 'Actinidia23926' => 'ach', 'Actinidia34420' => 'ach', 'Actinidia36970' => 'ach', 'Ah.02g111220' => 'amhyb', 'Ah.15g097750' => 'amhyb', 'AL4G27500' => 'aly', 'AL6G11470' => 'aly', 'AL8G35950' => 'aly', 'AL8G35960' => 'aly', 'AL8G35970' => 'aly', 'Aqoxy1G00912' => 'aox', 'Aqoxy2G02253' => 'aox', 'Aqoxy2G02411' => 'aox', 'Aqoxy5G00485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BZ66YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K8ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM4FUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6BF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HFV7XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25JBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0YNNV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MAKK6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P70IT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP2Z6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V61LZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YWP64R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3S9AI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7PGHH' => 'arhy', 'AT2G32150' => 'ath', 'AT3G62040' => 'ath', 'AT5G02230' => 'ath', 'AT5G59480' => 'ath', 'AT5G59490' => 'ath', 'ATR0332G060' => 'atr', 'ATR0559G190' => 'atr', 'ATR0693G294' => 'atr', 'Atru.chr3.3975' => 'acertr', 'Atru.chr3.3976' => 'acertr', 'Atru.chr3.3977' => 'acertr', 'Atru.chr4.2498' => 'acertr', 'Atru.chr5.838' => 'acertr', 'Atru.chr8.1990' => 'acertr', 'Atru.chr8.1991' => 'acertr', 'Atru.chr8.1992' => 'acertr', 'AUR62001759' => 'cqu', 'AUR62009545' => 'cqu', 'AUR62010474' => 'cqu', 'AUR62025820' => 'cqu', 'AUR62030422' => 'cqu', 'AUR62033605' => 'cqu', 'AUR62038615' => 'cqu', 'AUR62041347' => 'cqu', 'BcaB01g04574' => 'bca', 'BcaB02g09263' => 'bca', 'BcaB02g10453' => 'bca', 'BcaB05g22513' => 'bca', 'BcaB08g36253' => 'bca', 'BcaB08g36254' => 'bca', 'BcaC01g06519' => 'bca', 'BcaC02g11889' => 'bca', 'BcaC03g14010' => 'bca', 'BcaC03g18439' => 'bca', 'BcaC04g19765' => 'bca', 'BcaC09g48432' => 'bca', 'BcaNung07302' => 'bca', 'BolC2t06040H' => 'bol', 'BolC2t07346H' => 'bol', 'BolC3t13817H' => 'bol', 'BolC4t22625H' => 'bol', 'BolC4t23297H' => 'bol', 'BolC8t51278H' => 'bol', 'BolC9t58050H' => 'bol', 'BolC9t58051H' => 'bol', 'BolC9t60163H' => 'bol', 'BraA02t04712Z' => 'bra', 'BraA02t05791Z' => 'bra', 'BraA03t10483Z' => 'bra', 'BraA05t19795Z' => 'bra', 'BraA05t20276Z' => 'bra', 'BraA09t40827Z' => 'bra', 'BraA10t43750Z' => 'bra', 'BraA10t43751Z' => 'bra', 'BraA10t45370Z' => 'bra', 'C02p00400' => 'bna', 'C02p12460' => 'bna', 'C03p13680' => 'bna', 'C04p10270' => 'bna', 'C04p17500' => 'bna', 'C08p37010' => 'bna', 'C09p51880' => 'bna', 'C09p51890' => 'bna', 'C09p74300' => 'bna', 'CAN.G179.26' => 'can', 'CAN.G3384.1' => 'can', 'CAN.G394.68' => 'can', 'CAN.G907.13' => 'can', 'CANSAT11G0012' => 'cansat', 'CANSAT25G1586' => 'cansat', 'CANSAT35G0735' => 'cansat', 'CANSAT54G0556' => 'cansat', 'CANSAT64G0356' => 'cansat', 'CANSAT78G2042' => 'cansat', 'CARHR125920' => 'chi', 'CARHR131910' => 'chi', 'CARHR172390' => 'chi', 'CARHR211140' => 'chi', 'CARHR285850' => 'chi', 'CARHR285860' => 'chi', 'Carub.0004s1347' => 'cru', 'Carub.0004s1960' => 'cru', 'Carub.0005s2880' => 'cru', 'Carub.0006s0107' => 'cru', 'Carub.0008s2015' => 'cru', 'Carub.0008s2016' => 'cru', 'Carub.0008s2017' => 'cru', 'Ca_01315_v3' => 'car', 'Ca_05063_v3' => 'car', 'Ca_10231_v3' => 'car', 'Ca_10913_v3' => 'car', 'Ca_19156_v3' => 'car', 'Ca_23644_v3' => 'car', 'Ca_26735_v3' => 'car', 'Cc01_g13130' => 'ccan', 'Cc02_g21690' => 'ccan', 'Cc03_g03600' => 'ccan', 'Cc06_g02510' => 'ccan', 'CDE02G1265' => 'cde', 'CDE05G0415' => 'cde', 'CDE08G1082' => 'cde', 'Cfa005780' => 'cfa', 'Cfa011522' => 'cfa', 'Cfa011523' => 'cfa', 'Cfa015627' => 'cfa', 'Cfa017359' => 'cfa', 'Ciclev10005687m.g' => 'ccl', 'Ciclev10012173m.g' => 'ccl', 'Ciclev10021621m.g' => 'ccl', 'Ciclev10028968m.g' => 'ccl', 'Ciclev10029907m.g' => 'ccl', 'CiPaw.01G164800' => 'cil', 'CiPaw.07G083700' => 'cil', 'CiPaw.07G127000' => 'cil', 'CiPaw.07G136900' => 'cil', 'CiPaw.08G081700' => 'cil', 'CiPaw.09G194600' => 'cil', 'CiPaw.10G146500' => 'cil', 'CiPaw.13G091500' => 'cil', 'CiPaw.13G091600' => 'cil', 'ClCG00G003390' => 'cla', 'ClCG01G007220' => 'cla', 'ClCG03G001370' => 'cla', 'ClCG04G008100' => 'cla', 'ClCG06G006110' => 'cla', 'ClCG06G006130' => 'cla', 'ClCG10G021210' => 'cla', 'COL.COLO4_07648' => 'col', 'COL.COLO4_07650' => 'col', 'COL.COLO4_07651' => 'col', 'COL.COLO4_14780' => 'col', 'COL.COLO4_18546' => 'col', 'COL.COLO4_18547' => 'col', 'COL.COLO4_23103' => 'col', 'COL.COLO4_30419' => 'col', 'COL.COLO4_34232' => 'col', 'Cpa.g.sc169.20' => 'cpa', 'Cpa.g.sc57.45' => 'cpa', 'Cpa.g.sc58.124' => 'cpa', 'Cpa.g.sc58.125' => 'cpa', 'Cpa.g.sc81.118' => 'cpa', 'Cpa.g.sc81.119' => 'cpa', 'Cre12.g524700' => 'cre', 'CsaV3_1G034430' => 'csa', 'CsaV3_1G034440' => 'csa', 'CsaV3_1G034450' => 'csa', 'CsaV3_3G034830' => 'csa', 'CsaV3_4G025090' => 'csa', 'CsaV3_5G018660' => 'csa', 'CsaV3_6G038160' => 'csa', 'CSS0003447' => 'camsi', 'CSS0017840' => 'camsi', 'CSS0019260' => 'camsi', 'CSS0040375' => 'camsi', 'CSS0042533' => 'camsi', 'DCAR_005960' => 'dca', 'DCAR_012104' => 'dca', 'DCAR_012105' => 'dca', 'DCAR_012293' => 'dca', 'DCAR_015632' => 'dca', 'DCAR_024602' => 'dca', 'DCAR_028752' => 'dca', 'Dinv06261' => 'din', 'Dinv13982' => 'din', 'Dinv17029' => 'din', 'Dinv18463' => 'din', 'Dinv33181' => 'din', 'Dinv35585' => 'din', 'Dinv37161' => 'din', 'Dinv42977' => 'din', 'Dinv43122' => 'din', 'Dinv44517' => 'din', 'Duzib093G0256' => 'dzi', 'Duzib106G1254' => 'dzi', 'Duzib128G1789' => 'dzi', 'Duzib133G0633' => 'dzi', 'Duzib138G0510' => 'dzi', 'Duzib150G1084' => 'dzi', 'Duzib168G0488' => 'dzi', 'Duzib168G1523' => 'dzi', 'Duzib170G0133' => 'dzi', 'ECA234G1433' => 'eca', 'ECA236G1432' => 'eca', 'ECA236G2256' => 'eca', 'ECA236G2365' => 'eca', 'ECA236G4830' => 'eca', 'ECA248G1505' => 'eca', 'EL10Ac3g06431' => 'bvu', 'EL10Ac5g12577' => 'bvu', 'EL10Ac6g13533' => 'bvu', 'EL10Ac7g16045' => 'bvu', 'Eucgr.A01281' => 'egr', 'Eucgr.B02326' => 'egr', 'Eucgr.H03532' => 'egr', 'Eucgr.K00553' => 'egr', 'Eucgr.K03116' => 'egr', 'FAN02G3963' => 'fan', 'FAN05G0438' => 'fan', 'FAN09G2434' => 'fan', 'FAN12G3984' => 'fan', 'FAN14G0798' => 'fan', 'FAN17G0652' => 'fan', 'FAN19G1988' => 'fan', 'FAN22G0632' => 'fan', 'FAN23G0387' => 'fan', 'FAN26G1323' => 'fan', 'FAN28G0666' => 'fan', 'FvH4_1g26080' => 'fve', 'FvH4_3g36780' => 'fve', 'FvH4_4g15270' => 'fve', 'FvH4_6g13490' => 'fve', 'Glyma.01G098700' => 'gma', 'Glyma.03G065900' => 'gma', 'Glyma.03G073754' => 'gma', 'Glyma.03G073758' => 'gma', 'Glyma.03G083200' => 'gma', 'Glyma.03G225500' => 'gma', 'Glyma.05G037766' => 'gma', 'Glyma.07G133500' => 'gma', 'Glyma.10G139400' => 'gma', 'Glyma.10G248900' => 'gma', 'Glyma.11G137800' => 'gma', 'Glyma.12G061300' => 'gma', 'Glyma.13G337900' => 'gma', 'Glyma.15G036600' => 'gma', 'Glyma.18G182800' => 'gma', 'Glyma.19G222500' => 'gma', 'Glyma.20G144800' => 'gma', 'Gohir.A01G222000' => 'ghi', 'Gohir.A03G044000' => 'ghi', 'Gohir.A03G044100' => 'ghi', 'Gohir.A04G083100' => 'ghi', 'Gohir.A07G127200' => 'ghi', 'Gohir.A07G132400' => 'ghi', 'Gohir.A08G000700' => 'ghi', 'Gohir.A11G327300' => 'ghi', 'Gohir.D01G211500' => 'ghi', 'Gohir.D03G123400' => 'ghi', 'Gohir.D03G123500' => 'ghi', 'Gohir.D04G121800' => 'ghi', 'Gohir.D07G131500' => 'ghi', 'Gohir.D07G136600' => 'ghi', 'Gohir.D08G011600' => 'ghi', 'Gohir.D11G346200' => 'ghi', 'Gorai.001G142800' => 'gra', 'Gorai.001G148700' => 'gra', 'Gorai.002G257300' => 'gra', 'Gorai.003G130000' => 'gra', 'Gorai.003G130100' => 'gra', 'Gorai.004G005300' => 'gra', 'Gorai.007G376500' => 'gra', 'Gorai.012G104700' => 'gra', 'GSVIVG01017946001' => 'vvi', 'GSVIVG01024928001' => 'vvi', 'GSVIVG01028227001' => 'vvi', 'GSVIVG01034151001' => 'vvi', 'HanXRQChr05g0135031' => 'han', 'HanXRQChr05g0135041' => 'han', 'HanXRQChr05g0140021' => 'han', 'HanXRQChr06g0178981' => 'han', 'HanXRQChr07g0188251' => 'han', 'HanXRQChr08g0235311' => 'han', 'HanXRQChr09g0271011' => 'han', 'HanXRQChr10g0293321' => 'han', 'HanXRQChr13g0388171' => 'han', 'Haze_00916' => 'cav', 'Haze_05063' => 'cav', 'Haze_20814' => 'cav', 'Haze_24128' => 'cav', 'Hma1.2p1_0745F.1_g212010' => 'hma', 'Hma1.2p1_0757F.1_g213260' => 'hma', 'Hma1.2p1_0936F.1_g238840' => 'hma', 'Hma1.2p1_1735F.1_g299890' => 'hma', 'Hma1.2p1_1861F.1_g305685' => 'hma', 'HPP92_003397' => 'vpl', 'HPP92_012597' => 'vpl', 'HPP92_015520' => 'vpl', 'HPP92_015539' => 'vpl', 'HPP92_020373' => 'vpl', 'Hund04938' => 'sun', 'Hund10677' => 'sun', 'Hund11033' => 'sun', 'Hund12155' => 'sun', 'Lalb_Chr01g0022551' => 'lal', 'Lalb_Chr03g0042341' => 'lal', 'Lalb_Chr07g0192931' => 'lal', 'Lalb_Chr12g0209551' => 'lal', 'Lalb_Chr19g0125251' => 'lal', 'Lalb_Chr19g0137891' => 'lal', 'Lalb_Chr21g0304641' => 'lal', 'Lalb_Chr21g0309881' => 'lal', 'Lj1A5T12' => 'lonja', 'Lj1C148G10' => 'lonja', 'Lj2A93T83' => 'lonja', 'Lj3A738G68' => 'lonja', 'Lj3C966T1' => 'lonja', 'Lj3g0018958' => 'lja', 'Lj3g0021831' => 'lja', 'Lj3g0025443' => 'lja', 'Lj4g0026809' => 'lja', 'Lj5g0012558' => 'lja', 'Lj5g0021586' => 'lja', 'Lsat_1_v5_gn_5_156840' => 'lsa', 'Lsat_1_v5_gn_8_73460' => 'lsa', 'Lsat_1_v5_gn_8_73481' => 'lsa', 'Lsat_1_v5_gn_9_31601' => 'lsa', 'Lsat_1_v5_gn_9_77320' => 'lsa', 'Manes.01G171300' => 'mes', 'Manes.01G171400' => 'mes', 'Manes.01G236100' => 'mes', 'Manes.02G130500' => 'mes', 'Manes.02G130600' => 'mes', 'Manes.03G180200' => 'mes', 'Manes.05G007000' => 'mes', 'Manes.08G084400' => 'mes', 'Manes.09G092600' => 'mes', 'Manes.15G027900' => 'mes', 'MBI04_g40948_MAGBIO' => 'mbi', 'MBI14_g12123_MAGBIO' => 'mbi', 'MBI18_g28915_MAGBIO' => 'mbi', 'MCO09G053' => 'mco', 'MCO11G782' => 'mco', 'MCO15G215' => 'mco', 'MD03G1088500' => 'mdo', 'MD03G1088600' => 'mdo', 'MD04G1130800' => 'mdo', 'MD09G1291700' => 'mdo', 'MD11G1097500' => 'mdo', 'MD11G1097600' => 'mdo', 'MD12G1143900' => 'mdo', 'MD13G1191400' => 'mdo', 'MD16G1191500' => 'mdo', 'Medtr1g085570' => 'mtr', 'Medtr1g104610' => 'mtr', 'Medtr2g097520' => 'mtr', 'Medtr4g021800' => 'mtr', 'Medtr4g021825' => 'mtr', 'Medtr4g064270' => 'mtr', 'Medtr4g064380' => 'mtr', 'Medtr7g062150' => 'mtr', 'MELO3C003138.2' => 'cme', 'MELO3C005187.2' => 'cme', 'MELO3C009252.2' => 'cme', 'MELO3C014481.2' => 'cme', 'MELO3C020616.2' => 'cme', 'MELO3C020617.2' => 'cme', 'MELO3C020618.2' => 'cme', 'Migut.G00328' => 'egut', 'Migut.J00320' => 'egut', 'Migut.L01000' => 'egut', 'Migut.L01953' => 'egut', 'MSTRG.10253' => 'ama', 'MSTRG.19077' => 'ama', 'MSTRG.26780' => 'ama', 'MSTRG.4023' => 'ama', 'MSTRG.5655' => 'ama', 'MSTRG.9992' => 'ama', 'Nitab4.5_0000043g0310' => 'nta', 'Nitab4.5_0000463g0080' => 'nta', 'Nitab4.5_0000705g0170' => 'nta', 'Nitab4.5_0001326g0060' => 'nta', 'Nitab4.5_0001628g0030' => 'nta', 'Nitab4.5_0002103g0110' => 'nta', 'Nitab4.5_0002946g0030' => 'nta', 'Nitab4.5_0004639g0030' => 'nta', 'Nn2g11149' => 'nnu', 'Nn2g13389' => 'nnu', 'Nn4g25326' => 'nnu', 'Nn4g26290' => 'nnu', 'Nn5g29865' => 'nnu', 'Oeu004163.1' => 'oeu', 'Oeu006901.1' => 'oeu', 'Oeu010096.1' => 'oeu', 'Oeu024340.1' => 'oeu', 'Oeu048369.1' => 'oeu', 'Os01g0973000' => 'osa', 'Os03g0273800' => 'osa', 'Os03g0701200' => 'osa', 'Os03g0834050' => 'osa', 'Os07g0634400' => 'osa', 'Peaxi162Scf00092g01414' => 'pax', 'Peaxi162Scf00165g00818' => 'pax', 'Peaxi162Scf00309g00516' => 'pax', 'Peaxi162Scf00774g00218' => 'pax', 'PGR004G1824' => 'pgr', 'PGR004G2606' => 'pgr', 'PGR031G2716' => 'pgr', 'PGR102G2460' => 'pgr', 'PGR142G2599' => 'pgr', 'PGSC0003DMG400000843' => 'stu', 'PGSC0003DMG400008829' => 'stu', 'PGSC0003DMG400030418' => 'stu', 'PGSC0003DMG400031834' => 'stu', 'PGSC0003DMG401028300' => 'stu', 'PGSC0003DMG402028300' => 'stu', 'Phvul.001G219300' => 'pvu', 'Phvul.007G056000' => 'pvu', 'Phvul.007G208000' => 'pvu', 'Phvul.008G119500' => 'pvu', 'Phvul.010G011200' => 'pvu', 'Phvul.010G014800' => 'pvu', 'Phvul.011G062900' => 'pvu', 'Phvul.L007043' => 'pvu', 'Potri.001G242300' => 'ptr', 'Potri.002G185300' => 'ptr', 'Potri.006G086900' => 'ptr', 'Potri.008G151700' => 'ptr', 'Potri.009G033500' => 'ptr', 'Potri.010G089300' => 'ptr', 'Potri.014G110800' => 'ptr', 'Pp3c27_8130' => 'ppa', 'Pp3c6_27410' => 'ppa', 'PRCOL_00001659' => 'pco', 'PRCOL_00001927' => 'pco', 'PRCOL_00003649' => 'pco', 'Prupe.1G011600' => 'ppe', 'Prupe.3G000800' => 'ppe', 'Prupe.3G001100' => 'ppe', 'Prupe.6G072700' => 'ppe', 'Prupe.6G072800' => 'ppe', 'Prupe.6G257300' => 'ppe', 'Prupe.8G033000' => 'ppe', 'Psat0s2633g0080' => 'psa', 'Psat0s3396g0080' => 'psa', 'Psat0s3396g0200' => 'psa', 'Psat3g139080' => 'psa', 'Psat5g285080' => 'psa', 'Psat6g157760' => 'psa', 'Psat6g208440' => 'psa', 'Psat7g215320' => 'psa', 'Psat7g215400' => 'psa', 'Psat7g235600' => 'psa', 'Psat7g235760' => 'psa', 'PSO063G4603' => 'pso', 'PSO210G0182' => 'pso', 'PSO210G0196' => 'pso', 'PSO339G0394' => 'pso', 'PSO339G4127' => 'pso', 'PSO513G0064' => 'pso', 'PSO761G0079' => 'pso', 'QL01p031003' => 'qlo', 'QL01p031078' => 'qlo', 'QL06p003004' => 'qlo', 'QL07p048731' => 'qlo', 'QL09p037427' => 'qlo', 'RcHm_v2.0_Chr3g0466361' => 'rch', 'RcHm_v2.0_Chr3g0485571' => 'rch', 'RcHm_v2.0_Chr4g0416551' => 'rch', 'RcHm_v2.0_Chr5g0065831' => 'rch', 'Rhsim01G0230500' => 'rsi', 'Rhsim05G0194000' => 'rsi', 'Rhsim08G0250400' => 'rsi', 'Sabra02G0131000' => 'sbr', 'Sabra06G0066300' => 'sbr', 'Sabra08G0115500' => 'sbr', 'Sabra09G0023900' => 'sbr', 'Sabra10G0054000' => 'sbr', 'Sabra14G0081500' => 'sbr', 'Sabra16G0147100' => 'sbr', 'SalBow2G2957' => 'sbo', 'SalBow4G3320' => 'sbo', 'SalBow8G1894' => 'sbo', 'Sc07g0007950' => 'sci', 'Sc12g0001360' => 'sci', 'Sc13g0004330' => 'sci', 'Sc20g0005010' => 'sci', 'Sed0000361' => 'sed', 'Sed0001706' => 'sed', 'Sed0002422' => 'sed', 'Sed0004029' => 'sed', 'Sed0004602' => 'sed', 'Sed0004943' => 'sed', 'Sed0008646' => 'sed', 'Sed0023313' => 'sed', 'Sed0024843' => 'sed', 'SEGI_00081' => 'sgi', 'SEGI_00947' => 'sgi', 'SEGI_04046' => 'sgi', 'SEGI_06880' => 'sgi', 'SEGI_09736' => 'sgi', 'SEGI_12741' => 'sgi', 'SEGI_14530' => 'sgi', 'SEGI_20705' => 'sgi', 'SEGI_26088' => 'sgi', 'SEGI_28323' => 'sgi', 'SEGI_33343' => 'sgi', 'SGA_v2.0_scaffold126G33775' => 'sas', 'SGA_v2.0_scaffold2G01337' => 'sas', 'SGA_v2.0_scaffold38G15006' => 'sas', 'SGA_v2.0_scaffold39G15264' => 'sas', 'SGA_v2.0_scaffold453G51880' => 'sas', 'SHI12696' => 'shi', 'SMO367G1096' => 'smo', 'Solyc01g068630.3' => 'sly', 'Solyc05g011880.3' => 'sly', 'Solyc06g076300.3' => 'sly', 'Solyc09g010940.4' => 'sly', 'Solyc09g075890.3' => 'sly', 'Sopen01g030560' => 'spe', 'Sopen05g006630' => 'spe', 'Sopen06g032720' => 'spe', 'Sopen09g005660' => 'spe', 'Sopen09g030690' => 'spe', 'Sp4g14540' => 'spa', 'Sp4g20030' => 'spa', 'Sp5g01320' => 'spa', 'Sp6g21170' => 'spa', 'Sp6g21180' => 'spa', 'Sp6g21190' => 'spa', 'Sp6g40220' => 'spa', 'TAR362G0122' => 'tar', 'TAR362G1338' => 'tar', 'TAR369G0590' => 'tar', 'TAR371G0824' => 'tar', 'TAR622G1429' => 'tar', 'TAR623G0734' => 'tar', 'TAR625G0441' => 'tar', 'TAR629G0976' => 'tar', 'TAR633G1195' => 'tar', 'TAR636G2660' => 'tar', 'THA.LOC104799440' => 'tha', 'THA.LOC104800966' => 'tha', 'THA.LOC104806559' => 'tha', 'THA.LOC104810765' => 'tha', 'THA.LOC104816266' => 'tha', 'THA.LOC104817419' => 'tha', 'THA.LOC104827021' => 'tha', 'Thecc.01G327400' => 'tca', 'Thecc.04G229200' => 'tca', 'Thecc.05G037400' => 'tca', 'Thecc.09G318600' => 'tca', 'Thecc.09G318700' => 'tca', 'Thhalv10006238m.g' => 'esa', 'Thhalv10014321m.g' => 'esa', 'Thhalv10014335m.g' => 'esa', 'Thhalv10015826m.g' => 'esa', 'Thhalv10017107m.g' => 'esa', 'Thhalv10017180m.g' => 'esa', 'Thhalv10029339m.g' => 'esa', 'TPR.G1699' => 'tpr', 'TPR.G23609' => 'tpr', 'TPR.G3081' => 'tpr', 'TPR.G40397' => 'tpr', 'TPR.G5522' => 'tpr', 'TPR.G5618' => 'tpr', 'TPR.G5626' => 'tpr', 'TWI09G1632' => 'twi', 'TWI23G1230' => 'twi', 'TWI53G1064' => 'twi', 'TWI59G0751' => 'twi', 'TWI74G0947' => 'twi', 'TWI77G0337' => 'twi', 'TWI79G1254' => 'twi', 'unitig_0.g2341' => 'ugi', 'unitig_26.g10006' => 'ugi', 'unitig_26.g10008' => 'ugi', 'unitig_26.g9192' => 'ugi', 'vmacro14547' => 'vma', 'vmacro15333' => 'vma', 'vmacro18743' => 'vma', 'vmacro20166' => 'vma', 'VMungo0331G0523' => 'vmu', 'VMungo0331G1202' => 'vmu', 'VMungo0720G1228' => 'vmu', 'VMungo0720G1514' => 'vmu', 'VMungo1080G0169' => 'vmu', 'VMungo1127G1475' => 'vmu', 'VMungo1383G1208' => 'vmu', 'VMungo1383G1698' => 'vmu', 'Zm00001eb012270' => 'zma', 'Zm00001eb054100' => 'zma', 'Zm00001eb063350' => 'zma', 'Zm00001eb328560' => 'zma', 'Zm00001eb342820' => 'zma', 'Zm00001eb362210' => 'zma', 'Zm00001eb397730' => 'zma', 'Zm00001eb399750' => 'zma' ) $gf_id = 'HOM05D000959' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000959' ) $data_identifier = 'HOM05D000959' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 5, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 5, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 10, 'mbi' => (int) 3, 'mco' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 2, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 3, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 11, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399750' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000959', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '622', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p07100' => 'bna', 'A03p11720' => 'bna', 'A05p08300' => 'bna', 'A05p13380' => 'bna', 'A09p54130' => 'bna', 'A10p16690' => 'bna', 'A10p16700' => 'bna', 'A10p33390' => 'bna', 'Aa31LG10G16020' => 'aar', 'Aa31LG1G11810' => 'aar', 'Aa31LG1G11830' => 'aar', 'Aa31LG1G22510' => 'aar', 'Aa31LG5G4890' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5793' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2310' => 'aag', 'Actinidia08499' => 'ach', 'Actinidia11262' => 'ach', 'Actinidia23926' => 'ach', 'Actinidia34420' => 'ach', 'Actinidia36970' => 'ach', 'Ah.02g111220' => 'amhyb', 'Ah.15g097750' => 'amhyb', 'AL4G27500' => 'aly', 'AL6G11470' => 'aly', 'AL8G35950' => 'aly', 'AL8G35960' => 'aly', 'AL8G35970' => 'aly', 'Aqoxy1G00912' => 'aox', 'Aqoxy2G02253' => 'aox', 'Aqoxy2G02411' => 'aox', 'Aqoxy5G00485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BZ66YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K8ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM4FUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6BF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HFV7XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25JBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0YNNV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MAKK6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P70IT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP2Z6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V61LZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YWP64R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3S9AI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7PGHH' => 'arhy', 'AT2G32150' => 'ath', 'AT3G62040' => 'ath', 'AT5G02230' => 'ath', 'AT5G59480' => 'ath', 'AT5G59490' => 'ath', 'ATR0332G060' => 'atr', 'ATR0559G190' => 'atr', 'ATR0693G294' => 'atr', 'Atru.chr3.3975' => 'acertr', 'Atru.chr3.3976' => 'acertr', 'Atru.chr3.3977' => 'acertr', 'Atru.chr4.2498' => 'acertr', 'Atru.chr5.838' => 'acertr', 'Atru.chr8.1990' => 'acertr', 'Atru.chr8.1991' => 'acertr', 'Atru.chr8.1992' => 'acertr', 'AUR62001759' => 'cqu', 'AUR62009545' => 'cqu', 'AUR62010474' => 'cqu', 'AUR62025820' => 'cqu', 'AUR62030422' => 'cqu', 'AUR62033605' => 'cqu', 'AUR62038615' => 'cqu', 'AUR62041347' => 'cqu', 'BcaB01g04574' => 'bca', 'BcaB02g09263' => 'bca', 'BcaB02g10453' => 'bca', 'BcaB05g22513' => 'bca', 'BcaB08g36253' => 'bca', 'BcaB08g36254' => 'bca', 'BcaC01g06519' => 'bca', 'BcaC02g11889' => 'bca', 'BcaC03g14010' => 'bca', 'BcaC03g18439' => 'bca', 'BcaC04g19765' => 'bca', 'BcaC09g48432' => 'bca', 'BcaNung07302' => 'bca', 'BolC2t06040H' => 'bol', 'BolC2t07346H' => 'bol', 'BolC3t13817H' => 'bol', 'BolC4t22625H' => 'bol', 'BolC4t23297H' => 'bol', 'BolC8t51278H' => 'bol', 'BolC9t58050H' => 'bol', 'BolC9t58051H' => 'bol', 'BolC9t60163H' => 'bol', 'BraA02t04712Z' => 'bra', 'BraA02t05791Z' => 'bra', 'BraA03t10483Z' => 'bra', 'BraA05t19795Z' => 'bra', 'BraA05t20276Z' => 'bra', 'BraA09t40827Z' => 'bra', 'BraA10t43750Z' => 'bra', 'BraA10t43751Z' => 'bra', 'BraA10t45370Z' => 'bra', 'C02p00400' => 'bna', 'C02p12460' => 'bna', 'C03p13680' => 'bna', 'C04p10270' => 'bna', 'C04p17500' => 'bna', 'C08p37010' => 'bna', 'C09p51880' => 'bna', 'C09p51890' => 'bna', 'C09p74300' => 'bna', 'CAN.G179.26' => 'can', 'CAN.G3384.1' => 'can', 'CAN.G394.68' => 'can', 'CAN.G907.13' => 'can', 'CANSAT11G0012' => 'cansat', 'CANSAT25G1586' => 'cansat', 'CANSAT35G0735' => 'cansat', 'CANSAT54G0556' => 'cansat', 'CANSAT64G0356' => 'cansat', 'CANSAT78G2042' => 'cansat', 'CARHR125920' => 'chi', 'CARHR131910' => 'chi', 'CARHR172390' => 'chi', 'CARHR211140' => 'chi', 'CARHR285850' => 'chi', 'CARHR285860' => 'chi', 'Carub.0004s1347' => 'cru', 'Carub.0004s1960' => 'cru', 'Carub.0005s2880' => 'cru', 'Carub.0006s0107' => 'cru', 'Carub.0008s2015' => 'cru', 'Carub.0008s2016' => 'cru', 'Carub.0008s2017' => 'cru', 'Ca_01315_v3' => 'car', 'Ca_05063_v3' => 'car', 'Ca_10231_v3' => 'car', 'Ca_10913_v3' => 'car', 'Ca_19156_v3' => 'car', 'Ca_23644_v3' => 'car', 'Ca_26735_v3' => 'car', 'Cc01_g13130' => 'ccan', 'Cc02_g21690' => 'ccan', 'Cc03_g03600' => 'ccan', 'Cc06_g02510' => 'ccan', 'CDE02G1265' => 'cde', 'CDE05G0415' => 'cde', 'CDE08G1082' => 'cde', 'Cfa005780' => 'cfa', 'Cfa011522' => 'cfa', 'Cfa011523' => 'cfa', 'Cfa015627' => 'cfa', 'Cfa017359' => 'cfa', 'Ciclev10005687m.g' => 'ccl', 'Ciclev10012173m.g' => 'ccl', 'Ciclev10021621m.g' => 'ccl', 'Ciclev10028968m.g' => 'ccl', 'Ciclev10029907m.g' => 'ccl', 'CiPaw.01G164800' => 'cil', 'CiPaw.07G083700' => 'cil', 'CiPaw.07G127000' => 'cil', 'CiPaw.07G136900' => 'cil', 'CiPaw.08G081700' => 'cil', 'CiPaw.09G194600' => 'cil', 'CiPaw.10G146500' => 'cil', 'CiPaw.13G091500' => 'cil', 'CiPaw.13G091600' => 'cil', 'ClCG00G003390' => 'cla', 'ClCG01G007220' => 'cla', 'ClCG03G001370' => 'cla', 'ClCG04G008100' => 'cla', 'ClCG06G006110' => 'cla', 'ClCG06G006130' => 'cla', 'ClCG10G021210' => 'cla', 'COL.COLO4_07648' => 'col', 'COL.COLO4_07650' => 'col', 'COL.COLO4_07651' => 'col', 'COL.COLO4_14780' => 'col', 'COL.COLO4_18546' => 'col', 'COL.COLO4_18547' => 'col', 'COL.COLO4_23103' => 'col', 'COL.COLO4_30419' => 'col', 'COL.COLO4_34232' => 'col', 'Cpa.g.sc169.20' => 'cpa', 'Cpa.g.sc57.45' => 'cpa', 'Cpa.g.sc58.124' => 'cpa', 'Cpa.g.sc58.125' => 'cpa', 'Cpa.g.sc81.118' => 'cpa', 'Cpa.g.sc81.119' => 'cpa', 'Cre12.g524700' => 'cre', 'CsaV3_1G034430' => 'csa', 'CsaV3_1G034440' => 'csa', 'CsaV3_1G034450' => 'csa', 'CsaV3_3G034830' => 'csa', 'CsaV3_4G025090' => 'csa', 'CsaV3_5G018660' => 'csa', 'CsaV3_6G038160' => 'csa', 'CSS0003447' => 'camsi', 'CSS0017840' => 'camsi', 'CSS0019260' => 'camsi', 'CSS0040375' => 'camsi', 'CSS0042533' => 'camsi', 'DCAR_005960' => 'dca', 'DCAR_012104' => 'dca', 'DCAR_012105' => 'dca', 'DCAR_012293' => 'dca', 'DCAR_015632' => 'dca', 'DCAR_024602' => 'dca', 'DCAR_028752' => 'dca', 'Dinv06261' => 'din', 'Dinv13982' => 'din', 'Dinv17029' => 'din', 'Dinv18463' => 'din', 'Dinv33181' => 'din', 'Dinv35585' => 'din', 'Dinv37161' => 'din', 'Dinv42977' => 'din', 'Dinv43122' => 'din', 'Dinv44517' => 'din', 'Duzib093G0256' => 'dzi', 'Duzib106G1254' => 'dzi', 'Duzib128G1789' => 'dzi', 'Duzib133G0633' => 'dzi', 'Duzib138G0510' => 'dzi', 'Duzib150G1084' => 'dzi', 'Duzib168G0488' => 'dzi', 'Duzib168G1523' => 'dzi', 'Duzib170G0133' => 'dzi', 'ECA234G1433' => 'eca', 'ECA236G1432' => 'eca', 'ECA236G2256' => 'eca', 'ECA236G2365' => 'eca', 'ECA236G4830' => 'eca', 'ECA248G1505' => 'eca', 'EL10Ac3g06431' => 'bvu', 'EL10Ac5g12577' => 'bvu', 'EL10Ac6g13533' => 'bvu', 'EL10Ac7g16045' => 'bvu', 'Eucgr.A01281' => 'egr', 'Eucgr.B02326' => 'egr', 'Eucgr.H03532' => 'egr', 'Eucgr.K00553' => 'egr', 'Eucgr.K03116' => 'egr', 'FAN02G3963' => 'fan', 'FAN05G0438' => 'fan', 'FAN09G2434' => 'fan', 'FAN12G3984' => 'fan', 'FAN14G0798' => 'fan', 'FAN17G0652' => 'fan', 'FAN19G1988' => 'fan', 'FAN22G0632' => 'fan', 'FAN23G0387' => 'fan', 'FAN26G1323' => 'fan', 'FAN28G0666' => 'fan', 'FvH4_1g26080' => 'fve', 'FvH4_3g36780' => 'fve', 'FvH4_4g15270' => 'fve', 'FvH4_6g13490' => 'fve', 'Glyma.01G098700' => 'gma', 'Glyma.03G065900' => 'gma', 'Glyma.03G073754' => 'gma', 'Glyma.03G073758' => 'gma', 'Glyma.03G083200' => 'gma', 'Glyma.03G225500' => 'gma', 'Glyma.05G037766' => 'gma', 'Glyma.07G133500' => 'gma', 'Glyma.10G139400' => 'gma', 'Glyma.10G248900' => 'gma', 'Glyma.11G137800' => 'gma', 'Glyma.12G061300' => 'gma', 'Glyma.13G337900' => 'gma', 'Glyma.15G036600' => 'gma', 'Glyma.18G182800' => 'gma', 'Glyma.19G222500' => 'gma', 'Glyma.20G144800' => 'gma', 'Gohir.A01G222000' => 'ghi', 'Gohir.A03G044000' => 'ghi', 'Gohir.A03G044100' => 'ghi', 'Gohir.A04G083100' => 'ghi', 'Gohir.A07G127200' => 'ghi', 'Gohir.A07G132400' => 'ghi', 'Gohir.A08G000700' => 'ghi', 'Gohir.A11G327300' => 'ghi', 'Gohir.D01G211500' => 'ghi', 'Gohir.D03G123400' => 'ghi', 'Gohir.D03G123500' => 'ghi', 'Gohir.D04G121800' => 'ghi', 'Gohir.D07G131500' => 'ghi', 'Gohir.D07G136600' => 'ghi', 'Gohir.D08G011600' => 'ghi', 'Gohir.D11G346200' => 'ghi', 'Gorai.001G142800' => 'gra', 'Gorai.001G148700' => 'gra', 'Gorai.002G257300' => 'gra', 'Gorai.003G130000' => 'gra', 'Gorai.003G130100' => 'gra', 'Gorai.004G005300' => 'gra', 'Gorai.007G376500' => 'gra', 'Gorai.012G104700' => 'gra', 'GSVIVG01017946001' => 'vvi', 'GSVIVG01024928001' => 'vvi', 'GSVIVG01028227001' => 'vvi', 'GSVIVG01034151001' => 'vvi', 'HanXRQChr05g0135031' => 'han', 'HanXRQChr05g0135041' => 'han', 'HanXRQChr05g0140021' => 'han', 'HanXRQChr06g0178981' => 'han', 'HanXRQChr07g0188251' => 'han', 'HanXRQChr08g0235311' => 'han', 'HanXRQChr09g0271011' => 'han', 'HanXRQChr10g0293321' => 'han', 'HanXRQChr13g0388171' => 'han', 'Haze_00916' => 'cav', 'Haze_05063' => 'cav', 'Haze_20814' => 'cav', 'Haze_24128' => 'cav', 'Hma1.2p1_0745F.1_g212010' => 'hma', 'Hma1.2p1_0757F.1_g213260' => 'hma', 'Hma1.2p1_0936F.1_g238840' => 'hma', 'Hma1.2p1_1735F.1_g299890' => 'hma', 'Hma1.2p1_1861F.1_g305685' => 'hma', 'HPP92_003397' => 'vpl', 'HPP92_012597' => 'vpl', 'HPP92_015520' => 'vpl', 'HPP92_015539' => 'vpl', 'HPP92_020373' => 'vpl', 'Hund04938' => 'sun', 'Hund10677' => 'sun', 'Hund11033' => 'sun', 'Hund12155' => 'sun', 'Lalb_Chr01g0022551' => 'lal', 'Lalb_Chr03g0042341' => 'lal', 'Lalb_Chr07g0192931' => 'lal', 'Lalb_Chr12g0209551' => 'lal', 'Lalb_Chr19g0125251' => 'lal', 'Lalb_Chr19g0137891' => 'lal', 'Lalb_Chr21g0304641' => 'lal', 'Lalb_Chr21g0309881' => 'lal', 'Lj1A5T12' => 'lonja', 'Lj1C148G10' => 'lonja', 'Lj2A93T83' => 'lonja', 'Lj3A738G68' => 'lonja', 'Lj3C966T1' => 'lonja', 'Lj3g0018958' => 'lja', 'Lj3g0021831' => 'lja', 'Lj3g0025443' => 'lja', 'Lj4g0026809' => 'lja', 'Lj5g0012558' => 'lja', 'Lj5g0021586' => 'lja', 'Lsat_1_v5_gn_5_156840' => 'lsa', 'Lsat_1_v5_gn_8_73460' => 'lsa', 'Lsat_1_v5_gn_8_73481' => 'lsa', 'Lsat_1_v5_gn_9_31601' => 'lsa', 'Lsat_1_v5_gn_9_77320' => 'lsa', 'Manes.01G171300' => 'mes', 'Manes.01G171400' => 'mes', 'Manes.01G236100' => 'mes', 'Manes.02G130500' => 'mes', 'Manes.02G130600' => 'mes', 'Manes.03G180200' => 'mes', 'Manes.05G007000' => 'mes', 'Manes.08G084400' => 'mes', 'Manes.09G092600' => 'mes', 'Manes.15G027900' => 'mes', 'MBI04_g40948_MAGBIO' => 'mbi', 'MBI14_g12123_MAGBIO' => 'mbi', 'MBI18_g28915_MAGBIO' => 'mbi', 'MCO09G053' => 'mco', 'MCO11G782' => 'mco', 'MCO15G215' => 'mco', 'MD03G1088500' => 'mdo', 'MD03G1088600' => 'mdo', 'MD04G1130800' => 'mdo', 'MD09G1291700' => 'mdo', 'MD11G1097500' => 'mdo', 'MD11G1097600' => 'mdo', 'MD12G1143900' => 'mdo', 'MD13G1191400' => 'mdo', 'MD16G1191500' => 'mdo', 'Medtr1g085570' => 'mtr', 'Medtr1g104610' => 'mtr', 'Medtr2g097520' => 'mtr', 'Medtr4g021800' => 'mtr', 'Medtr4g021825' => 'mtr', 'Medtr4g064270' => 'mtr', 'Medtr4g064380' => 'mtr', 'Medtr7g062150' => 'mtr', 'MELO3C003138.2' => 'cme', 'MELO3C005187.2' => 'cme', 'MELO3C009252.2' => 'cme', 'MELO3C014481.2' => 'cme', 'MELO3C020616.2' => 'cme', 'MELO3C020617.2' => 'cme', 'MELO3C020618.2' => 'cme', 'Migut.G00328' => 'egut', 'Migut.J00320' => 'egut', 'Migut.L01000' => 'egut', 'Migut.L01953' => 'egut', 'MSTRG.10253' => 'ama', 'MSTRG.19077' => 'ama', 'MSTRG.26780' => 'ama', 'MSTRG.4023' => 'ama', 'MSTRG.5655' => 'ama', 'MSTRG.9992' => 'ama', 'Nitab4.5_0000043g0310' => 'nta', 'Nitab4.5_0000463g0080' => 'nta', 'Nitab4.5_0000705g0170' => 'nta', 'Nitab4.5_0001326g0060' => 'nta', 'Nitab4.5_0001628g0030' => 'nta', 'Nitab4.5_0002103g0110' => 'nta', 'Nitab4.5_0002946g0030' => 'nta', 'Nitab4.5_0004639g0030' => 'nta', 'Nn2g11149' => 'nnu', 'Nn2g13389' => 'nnu', 'Nn4g25326' => 'nnu', 'Nn4g26290' => 'nnu', 'Nn5g29865' => 'nnu', 'Oeu004163.1' => 'oeu', 'Oeu006901.1' => 'oeu', 'Oeu010096.1' => 'oeu', 'Oeu024340.1' => 'oeu', 'Oeu048369.1' => 'oeu', 'Os01g0973000' => 'osa', 'Os03g0273800' => 'osa', 'Os03g0701200' => 'osa', 'Os03g0834050' => 'osa', 'Os07g0634400' => 'osa', 'Peaxi162Scf00092g01414' => 'pax', 'Peaxi162Scf00165g00818' => 'pax', 'Peaxi162Scf00309g00516' => 'pax', 'Peaxi162Scf00774g00218' => 'pax', 'PGR004G1824' => 'pgr', 'PGR004G2606' => 'pgr', 'PGR031G2716' => 'pgr', 'PGR102G2460' => 'pgr', 'PGR142G2599' => 'pgr', 'PGSC0003DMG400000843' => 'stu', 'PGSC0003DMG400008829' => 'stu', 'PGSC0003DMG400030418' => 'stu', 'PGSC0003DMG400031834' => 'stu', 'PGSC0003DMG401028300' => 'stu', 'PGSC0003DMG402028300' => 'stu', 'Phvul.001G219300' => 'pvu', 'Phvul.007G056000' => 'pvu', 'Phvul.007G208000' => 'pvu', 'Phvul.008G119500' => 'pvu', 'Phvul.010G011200' => 'pvu', 'Phvul.010G014800' => 'pvu', 'Phvul.011G062900' => 'pvu', 'Phvul.L007043' => 'pvu', 'Potri.001G242300' => 'ptr', 'Potri.002G185300' => 'ptr', 'Potri.006G086900' => 'ptr', 'Potri.008G151700' => 'ptr', 'Potri.009G033500' => 'ptr', 'Potri.010G089300' => 'ptr', 'Potri.014G110800' => 'ptr', 'Pp3c27_8130' => 'ppa', 'Pp3c6_27410' => 'ppa', 'PRCOL_00001659' => 'pco', 'PRCOL_00001927' => 'pco', 'PRCOL_00003649' => 'pco', 'Prupe.1G011600' => 'ppe', 'Prupe.3G000800' => 'ppe', 'Prupe.3G001100' => 'ppe', 'Prupe.6G072700' => 'ppe', 'Prupe.6G072800' => 'ppe', 'Prupe.6G257300' => 'ppe', 'Prupe.8G033000' => 'ppe', 'Psat0s2633g0080' => 'psa', 'Psat0s3396g0080' => 'psa', 'Psat0s3396g0200' => 'psa', 'Psat3g139080' => 'psa', 'Psat5g285080' => 'psa', 'Psat6g157760' => 'psa', 'Psat6g208440' => 'psa', 'Psat7g215320' => 'psa', 'Psat7g215400' => 'psa', 'Psat7g235600' => 'psa', 'Psat7g235760' => 'psa', 'PSO063G4603' => 'pso', 'PSO210G0182' => 'pso', 'PSO210G0196' => 'pso', 'PSO339G0394' => 'pso', 'PSO339G4127' => 'pso', 'PSO513G0064' => 'pso', 'PSO761G0079' => 'pso', 'QL01p031003' => 'qlo', 'QL01p031078' => 'qlo', 'QL06p003004' => 'qlo', 'QL07p048731' => 'qlo', 'QL09p037427' => 'qlo', 'RcHm_v2.0_Chr3g0466361' => 'rch', 'RcHm_v2.0_Chr3g0485571' => 'rch', 'RcHm_v2.0_Chr4g0416551' => 'rch', 'RcHm_v2.0_Chr5g0065831' => 'rch', 'Rhsim01G0230500' => 'rsi', 'Rhsim05G0194000' => 'rsi', 'Rhsim08G0250400' => 'rsi', 'Sabra02G0131000' => 'sbr', 'Sabra06G0066300' => 'sbr', 'Sabra08G0115500' => 'sbr', 'Sabra09G0023900' => 'sbr', 'Sabra10G0054000' => 'sbr', 'Sabra14G0081500' => 'sbr', 'Sabra16G0147100' => 'sbr', 'SalBow2G2957' => 'sbo', 'SalBow4G3320' => 'sbo', 'SalBow8G1894' => 'sbo', 'Sc07g0007950' => 'sci', 'Sc12g0001360' => 'sci', 'Sc13g0004330' => 'sci', 'Sc20g0005010' => 'sci', 'Sed0000361' => 'sed', 'Sed0001706' => 'sed', 'Sed0002422' => 'sed', 'Sed0004029' => 'sed', 'Sed0004602' => 'sed', 'Sed0004943' => 'sed', 'Sed0008646' => 'sed', 'Sed0023313' => 'sed', 'Sed0024843' => 'sed', 'SEGI_00081' => 'sgi', 'SEGI_00947' => 'sgi', 'SEGI_04046' => 'sgi', 'SEGI_06880' => 'sgi', 'SEGI_09736' => 'sgi', 'SEGI_12741' => 'sgi', 'SEGI_14530' => 'sgi', 'SEGI_20705' => 'sgi', 'SEGI_26088' => 'sgi', 'SEGI_28323' => 'sgi', 'SEGI_33343' => 'sgi', 'SGA_v2.0_scaffold126G33775' => 'sas', 'SGA_v2.0_scaffold2G01337' => 'sas', 'SGA_v2.0_scaffold38G15006' => 'sas', 'SGA_v2.0_scaffold39G15264' => 'sas', 'SGA_v2.0_scaffold453G51880' => 'sas', 'SHI12696' => 'shi', 'SMO367G1096' => 'smo', 'Solyc01g068630.3' => 'sly', 'Solyc05g011880.3' => 'sly', 'Solyc06g076300.3' => 'sly', 'Solyc09g010940.4' => 'sly', 'Solyc09g075890.3' => 'sly', 'Sopen01g030560' => 'spe', 'Sopen05g006630' => 'spe', 'Sopen06g032720' => 'spe', 'Sopen09g005660' => 'spe', 'Sopen09g030690' => 'spe', 'Sp4g14540' => 'spa', 'Sp4g20030' => 'spa', 'Sp5g01320' => 'spa', 'Sp6g21170' => 'spa', 'Sp6g21180' => 'spa', 'Sp6g21190' => 'spa', 'Sp6g40220' => 'spa', 'TAR362G0122' => 'tar', 'TAR362G1338' => 'tar', 'TAR369G0590' => 'tar', 'TAR371G0824' => 'tar', 'TAR622G1429' => 'tar', 'TAR623G0734' => 'tar', 'TAR625G0441' => 'tar', 'TAR629G0976' => 'tar', 'TAR633G1195' => 'tar', 'TAR636G2660' => 'tar', 'THA.LOC104799440' => 'tha', 'THA.LOC104800966' => 'tha', 'THA.LOC104806559' => 'tha', 'THA.LOC104810765' => 'tha', 'THA.LOC104816266' => 'tha', 'THA.LOC104817419' => 'tha', 'THA.LOC104827021' => 'tha', 'Thecc.01G327400' => 'tca', 'Thecc.04G229200' => 'tca', 'Thecc.05G037400' => 'tca', 'Thecc.09G318600' => 'tca', 'Thecc.09G318700' => 'tca', 'Thhalv10006238m.g' => 'esa', 'Thhalv10014321m.g' => 'esa', 'Thhalv10014335m.g' => 'esa', 'Thhalv10015826m.g' => 'esa', 'Thhalv10017107m.g' => 'esa', 'Thhalv10017180m.g' => 'esa', 'Thhalv10029339m.g' => 'esa', 'TPR.G1699' => 'tpr', 'TPR.G23609' => 'tpr', 'TPR.G3081' => 'tpr', 'TPR.G40397' => 'tpr', 'TPR.G5522' => 'tpr', 'TPR.G5618' => 'tpr', 'TPR.G5626' => 'tpr', 'TWI09G1632' => 'twi', 'TWI23G1230' => 'twi', 'TWI53G1064' => 'twi', 'TWI59G0751' => 'twi', 'TWI74G0947' => 'twi', 'TWI77G0337' => 'twi', 'TWI79G1254' => 'twi', 'unitig_0.g2341' => 'ugi', 'unitig_26.g10006' => 'ugi', 'unitig_26.g10008' => 'ugi', 'unitig_26.g9192' => 'ugi', 'vmacro14547' => 'vma', 'vmacro15333' => 'vma', 'vmacro18743' => 'vma', 'vmacro20166' => 'vma', 'VMungo0331G0523' => 'vmu', 'VMungo0331G1202' => 'vmu', 'VMungo0720G1228' => 'vmu', 'VMungo0720G1514' => 'vmu', 'VMungo1080G0169' => 'vmu', 'VMungo1127G1475' => 'vmu', 'VMungo1383G1208' => 'vmu', 'VMungo1383G1698' => 'vmu', 'Zm00001eb012270' => 'zma', 'Zm00001eb054100' => 'zma', 'Zm00001eb063350' => 'zma', 'Zm00001eb328560' => 'zma', 'Zm00001eb342820' => 'zma', 'Zm00001eb362210' => 'zma', 'Zm00001eb397730' => 'zma', 'Zm00001eb399750' => 'zma' ), 'gf_id' => 'HOM05D000959', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000959' ), 'data_identifier' => 'HOM05D000959', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000959', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '622', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p07100' => 'bna', 'A03p11720' => 'bna', 'A05p08300' => 'bna', 'A05p13380' => 'bna', 'A09p54130' => 'bna', 'A10p16690' => 'bna', 'A10p16700' => 'bna', 'A10p33390' => 'bna', 'Aa31LG10G16020' => 'aar', 'Aa31LG1G11810' => 'aar', 'Aa31LG1G11830' => 'aar', 'Aa31LG1G22510' => 'aar', 'Aa31LG5G4890' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5793' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2310' => 'aag', 'Actinidia08499' => 'ach', 'Actinidia11262' => 'ach', 'Actinidia23926' => 'ach', 'Actinidia34420' => 'ach', 'Actinidia36970' => 'ach', 'Ah.02g111220' => 'amhyb', 'Ah.15g097750' => 'amhyb', 'AL4G27500' => 'aly', 'AL6G11470' => 'aly', 'AL8G35950' => 'aly', 'AL8G35960' => 'aly', 'AL8G35970' => 'aly', 'Aqoxy1G00912' => 'aox', 'Aqoxy2G02253' => 'aox', 'Aqoxy2G02411' => 'aox', 'Aqoxy5G00485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BZ66YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K8ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM4FUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6BF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HFV7XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25JBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0YNNV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MAKK6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P70IT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP2Z6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V61LZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YWP64R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3S9AI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7PGHH' => 'arhy', 'AT2G32150' => 'ath', 'AT3G62040' => 'ath', 'AT5G02230' => 'ath', 'AT5G59480' => 'ath', 'AT5G59490' => 'ath', 'ATR0332G060' => 'atr', 'ATR0559G190' => 'atr', 'ATR0693G294' => 'atr', 'Atru.chr3.3975' => 'acertr', 'Atru.chr3.3976' => 'acertr', 'Atru.chr3.3977' => 'acertr', 'Atru.chr4.2498' => 'acertr', 'Atru.chr5.838' => 'acertr', 'Atru.chr8.1990' => 'acertr', 'Atru.chr8.1991' => 'acertr', 'Atru.chr8.1992' => 'acertr', 'AUR62001759' => 'cqu', 'AUR62009545' => 'cqu', 'AUR62010474' => 'cqu', 'AUR62025820' => 'cqu', 'AUR62030422' => 'cqu', 'AUR62033605' => 'cqu', 'AUR62038615' => 'cqu', 'AUR62041347' => 'cqu', 'BcaB01g04574' => 'bca', 'BcaB02g09263' => 'bca', 'BcaB02g10453' => 'bca', 'BcaB05g22513' => 'bca', 'BcaB08g36253' => 'bca', 'BcaB08g36254' => 'bca', 'BcaC01g06519' => 'bca', 'BcaC02g11889' => 'bca', 'BcaC03g14010' => 'bca', 'BcaC03g18439' => 'bca', 'BcaC04g19765' => 'bca', 'BcaC09g48432' => 'bca', 'BcaNung07302' => 'bca', 'BolC2t06040H' => 'bol', 'BolC2t07346H' => 'bol', 'BolC3t13817H' => 'bol', 'BolC4t22625H' => 'bol', 'BolC4t23297H' => 'bol', 'BolC8t51278H' => 'bol', 'BolC9t58050H' => 'bol', 'BolC9t58051H' => 'bol', 'BolC9t60163H' => 'bol', 'BraA02t04712Z' => 'bra', 'BraA02t05791Z' => 'bra', 'BraA03t10483Z' => 'bra', 'BraA05t19795Z' => 'bra', 'BraA05t20276Z' => 'bra', 'BraA09t40827Z' => 'bra', 'BraA10t43750Z' => 'bra', 'BraA10t43751Z' => 'bra', 'BraA10t45370Z' => 'bra', 'C02p00400' => 'bna', 'C02p12460' => 'bna', 'C03p13680' => 'bna', 'C04p10270' => 'bna', 'C04p17500' => 'bna', 'C08p37010' => 'bna', 'C09p51880' => 'bna', 'C09p51890' => 'bna', 'C09p74300' => 'bna', 'CAN.G179.26' => 'can', 'CAN.G3384.1' => 'can', 'CAN.G394.68' => 'can', 'CAN.G907.13' => 'can', 'CANSAT11G0012' => 'cansat', 'CANSAT25G1586' => 'cansat', 'CANSAT35G0735' => 'cansat', 'CANSAT54G0556' => 'cansat', 'CANSAT64G0356' => 'cansat', 'CANSAT78G2042' => 'cansat', 'CARHR125920' => 'chi', 'CARHR131910' => 'chi', 'CARHR172390' => 'chi', 'CARHR211140' => 'chi', 'CARHR285850' => 'chi', 'CARHR285860' => 'chi', 'Carub.0004s1347' => 'cru', 'Carub.0004s1960' => 'cru', 'Carub.0005s2880' => 'cru', 'Carub.0006s0107' => 'cru', 'Carub.0008s2015' => 'cru', 'Carub.0008s2016' => 'cru', 'Carub.0008s2017' => 'cru', 'Ca_01315_v3' => 'car', 'Ca_05063_v3' => 'car', 'Ca_10231_v3' => 'car', 'Ca_10913_v3' => 'car', 'Ca_19156_v3' => 'car', 'Ca_23644_v3' => 'car', 'Ca_26735_v3' => 'car', 'Cc01_g13130' => 'ccan', 'Cc02_g21690' => 'ccan', 'Cc03_g03600' => 'ccan', 'Cc06_g02510' => 'ccan', 'CDE02G1265' => 'cde', 'CDE05G0415' => 'cde', 'CDE08G1082' => 'cde', 'Cfa005780' => 'cfa', 'Cfa011522' => 'cfa', 'Cfa011523' => 'cfa', 'Cfa015627' => 'cfa', 'Cfa017359' => 'cfa', 'Ciclev10005687m.g' => 'ccl', 'Ciclev10012173m.g' => 'ccl', 'Ciclev10021621m.g' => 'ccl', 'Ciclev10028968m.g' => 'ccl', 'Ciclev10029907m.g' => 'ccl', 'CiPaw.01G164800' => 'cil', 'CiPaw.07G083700' => 'cil', 'CiPaw.07G127000' => 'cil', 'CiPaw.07G136900' => 'cil', 'CiPaw.08G081700' => 'cil', 'CiPaw.09G194600' => 'cil', 'CiPaw.10G146500' => 'cil', 'CiPaw.13G091500' => 'cil', 'CiPaw.13G091600' => 'cil', 'ClCG00G003390' => 'cla', 'ClCG01G007220' => 'cla', 'ClCG03G001370' => 'cla', 'ClCG04G008100' => 'cla', 'ClCG06G006110' => 'cla', 'ClCG06G006130' => 'cla', 'ClCG10G021210' => 'cla', 'COL.COLO4_07648' => 'col', 'COL.COLO4_07650' => 'col', 'COL.COLO4_07651' => 'col', 'COL.COLO4_14780' => 'col', 'COL.COLO4_18546' => 'col', 'COL.COLO4_18547' => 'col', 'COL.COLO4_23103' => 'col', 'COL.COLO4_30419' => 'col', 'COL.COLO4_34232' => 'col', 'Cpa.g.sc169.20' => 'cpa', 'Cpa.g.sc57.45' => 'cpa', 'Cpa.g.sc58.124' => 'cpa', 'Cpa.g.sc58.125' => 'cpa', 'Cpa.g.sc81.118' => 'cpa', 'Cpa.g.sc81.119' => 'cpa', 'Cre12.g524700' => 'cre', 'CsaV3_1G034430' => 'csa', 'CsaV3_1G034440' => 'csa', 'CsaV3_1G034450' => 'csa', 'CsaV3_3G034830' => 'csa', 'CsaV3_4G025090' => 'csa', 'CsaV3_5G018660' => 'csa', 'CsaV3_6G038160' => 'csa', 'CSS0003447' => 'camsi', 'CSS0017840' => 'camsi', 'CSS0019260' => 'camsi', 'CSS0040375' => 'camsi', 'CSS0042533' => 'camsi', 'DCAR_005960' => 'dca', 'DCAR_012104' => 'dca', 'DCAR_012105' => 'dca', 'DCAR_012293' => 'dca', 'DCAR_015632' => 'dca', 'DCAR_024602' => 'dca', 'DCAR_028752' => 'dca', 'Dinv06261' => 'din', 'Dinv13982' => 'din', 'Dinv17029' => 'din', 'Dinv18463' => 'din', 'Dinv33181' => 'din', 'Dinv35585' => 'din', 'Dinv37161' => 'din', 'Dinv42977' => 'din', 'Dinv43122' => 'din', 'Dinv44517' => 'din', 'Duzib093G0256' => 'dzi', 'Duzib106G1254' => 'dzi', 'Duzib128G1789' => 'dzi', 'Duzib133G0633' => 'dzi', 'Duzib138G0510' => 'dzi', 'Duzib150G1084' => 'dzi', 'Duzib168G0488' => 'dzi', 'Duzib168G1523' => 'dzi', 'Duzib170G0133' => 'dzi', 'ECA234G1433' => 'eca', 'ECA236G1432' => 'eca', 'ECA236G2256' => 'eca', 'ECA236G2365' => 'eca', 'ECA236G4830' => 'eca', 'ECA248G1505' => 'eca', 'EL10Ac3g06431' => 'bvu', 'EL10Ac5g12577' => 'bvu', 'EL10Ac6g13533' => 'bvu', 'EL10Ac7g16045' => 'bvu', 'Eucgr.A01281' => 'egr', 'Eucgr.B02326' => 'egr', 'Eucgr.H03532' => 'egr', 'Eucgr.K00553' => 'egr', 'Eucgr.K03116' => 'egr', 'FAN02G3963' => 'fan', 'FAN05G0438' => 'fan', 'FAN09G2434' => 'fan', 'FAN12G3984' => 'fan', 'FAN14G0798' => 'fan', 'FAN17G0652' => 'fan', 'FAN19G1988' => 'fan', 'FAN22G0632' => 'fan', 'FAN23G0387' => 'fan', 'FAN26G1323' => 'fan', 'FAN28G0666' => 'fan', 'FvH4_1g26080' => 'fve', 'FvH4_3g36780' => 'fve', 'FvH4_4g15270' => 'fve', 'FvH4_6g13490' => 'fve', 'Glyma.01G098700' => 'gma', 'Glyma.03G065900' => 'gma', 'Glyma.03G073754' => 'gma', 'Glyma.03G073758' => 'gma', 'Glyma.03G083200' => 'gma', 'Glyma.03G225500' => 'gma', 'Glyma.05G037766' => 'gma', 'Glyma.07G133500' => 'gma', 'Glyma.10G139400' => 'gma', 'Glyma.10G248900' => 'gma', 'Glyma.11G137800' => 'gma', 'Glyma.12G061300' => 'gma', 'Glyma.13G337900' => 'gma', 'Glyma.15G036600' => 'gma', 'Glyma.18G182800' => 'gma', 'Glyma.19G222500' => 'gma', 'Glyma.20G144800' => 'gma', 'Gohir.A01G222000' => 'ghi', 'Gohir.A03G044000' => 'ghi', 'Gohir.A03G044100' => 'ghi', 'Gohir.A04G083100' => 'ghi', 'Gohir.A07G127200' => 'ghi', 'Gohir.A07G132400' => 'ghi', 'Gohir.A08G000700' => 'ghi', 'Gohir.A11G327300' => 'ghi', 'Gohir.D01G211500' => 'ghi', 'Gohir.D03G123400' => 'ghi', 'Gohir.D03G123500' => 'ghi', 'Gohir.D04G121800' => 'ghi', 'Gohir.D07G131500' => 'ghi', 'Gohir.D07G136600' => 'ghi', 'Gohir.D08G011600' => 'ghi', 'Gohir.D11G346200' => 'ghi', 'Gorai.001G142800' => 'gra', 'Gorai.001G148700' => 'gra', 'Gorai.002G257300' => 'gra', 'Gorai.003G130000' => 'gra', 'Gorai.003G130100' => 'gra', 'Gorai.004G005300' => 'gra', 'Gorai.007G376500' => 'gra', 'Gorai.012G104700' => 'gra', 'GSVIVG01017946001' => 'vvi', 'GSVIVG01024928001' => 'vvi', 'GSVIVG01028227001' => 'vvi', 'GSVIVG01034151001' => 'vvi', 'HanXRQChr05g0135031' => 'han', 'HanXRQChr05g0135041' => 'han', 'HanXRQChr05g0140021' => 'han', 'HanXRQChr06g0178981' => 'han', 'HanXRQChr07g0188251' => 'han', 'HanXRQChr08g0235311' => 'han', 'HanXRQChr09g0271011' => 'han', 'HanXRQChr10g0293321' => 'han', 'HanXRQChr13g0388171' => 'han', 'Haze_00916' => 'cav', 'Haze_05063' => 'cav', 'Haze_20814' => 'cav', 'Haze_24128' => 'cav', 'Hma1.2p1_0745F.1_g212010' => 'hma', 'Hma1.2p1_0757F.1_g213260' => 'hma', 'Hma1.2p1_0936F.1_g238840' => 'hma', 'Hma1.2p1_1735F.1_g299890' => 'hma', 'Hma1.2p1_1861F.1_g305685' => 'hma', 'HPP92_003397' => 'vpl', 'HPP92_012597' => 'vpl', 'HPP92_015520' => 'vpl', 'HPP92_015539' => 'vpl', 'HPP92_020373' => 'vpl', 'Hund04938' => 'sun', 'Hund10677' => 'sun', 'Hund11033' => 'sun', 'Hund12155' => 'sun', 'Lalb_Chr01g0022551' => 'lal', 'Lalb_Chr03g0042341' => 'lal', 'Lalb_Chr07g0192931' => 'lal', 'Lalb_Chr12g0209551' => 'lal', 'Lalb_Chr19g0125251' => 'lal', 'Lalb_Chr19g0137891' => 'lal', 'Lalb_Chr21g0304641' => 'lal', 'Lalb_Chr21g0309881' => 'lal', 'Lj1A5T12' => 'lonja', 'Lj1C148G10' => 'lonja', 'Lj2A93T83' => 'lonja', 'Lj3A738G68' => 'lonja', 'Lj3C966T1' => 'lonja', 'Lj3g0018958' => 'lja', 'Lj3g0021831' => 'lja', 'Lj3g0025443' => 'lja', 'Lj4g0026809' => 'lja', 'Lj5g0012558' => 'lja', 'Lj5g0021586' => 'lja', 'Lsat_1_v5_gn_5_156840' => 'lsa', 'Lsat_1_v5_gn_8_73460' => 'lsa', 'Lsat_1_v5_gn_8_73481' => 'lsa', 'Lsat_1_v5_gn_9_31601' => 'lsa', 'Lsat_1_v5_gn_9_77320' => 'lsa', 'Manes.01G171300' => 'mes', 'Manes.01G171400' => 'mes', 'Manes.01G236100' => 'mes', 'Manes.02G130500' => 'mes', 'Manes.02G130600' => 'mes', 'Manes.03G180200' => 'mes', 'Manes.05G007000' => 'mes', 'Manes.08G084400' => 'mes', 'Manes.09G092600' => 'mes', 'Manes.15G027900' => 'mes', 'MBI04_g40948_MAGBIO' => 'mbi', 'MBI14_g12123_MAGBIO' => 'mbi', 'MBI18_g28915_MAGBIO' => 'mbi', 'MCO09G053' => 'mco', 'MCO11G782' => 'mco', 'MCO15G215' => 'mco', 'MD03G1088500' => 'mdo', 'MD03G1088600' => 'mdo', 'MD04G1130800' => 'mdo', 'MD09G1291700' => 'mdo', 'MD11G1097500' => 'mdo', 'MD11G1097600' => 'mdo', 'MD12G1143900' => 'mdo', 'MD13G1191400' => 'mdo', 'MD16G1191500' => 'mdo', 'Medtr1g085570' => 'mtr', 'Medtr1g104610' => 'mtr', 'Medtr2g097520' => 'mtr', 'Medtr4g021800' => 'mtr', 'Medtr4g021825' => 'mtr', 'Medtr4g064270' => 'mtr', 'Medtr4g064380' => 'mtr', 'Medtr7g062150' => 'mtr', 'MELO3C003138.2' => 'cme', 'MELO3C005187.2' => 'cme', 'MELO3C009252.2' => 'cme', 'MELO3C014481.2' => 'cme', 'MELO3C020616.2' => 'cme', 'MELO3C020617.2' => 'cme', 'MELO3C020618.2' => 'cme', 'Migut.G00328' => 'egut', 'Migut.J00320' => 'egut', 'Migut.L01000' => 'egut', 'Migut.L01953' => 'egut', 'MSTRG.10253' => 'ama', 'MSTRG.19077' => 'ama', 'MSTRG.26780' => 'ama', 'MSTRG.4023' => 'ama', 'MSTRG.5655' => 'ama', 'MSTRG.9992' => 'ama', 'Nitab4.5_0000043g0310' => 'nta', 'Nitab4.5_0000463g0080' => 'nta', 'Nitab4.5_0000705g0170' => 'nta', 'Nitab4.5_0001326g0060' => 'nta', 'Nitab4.5_0001628g0030' => 'nta', 'Nitab4.5_0002103g0110' => 'nta', 'Nitab4.5_0002946g0030' => 'nta', 'Nitab4.5_0004639g0030' => 'nta', 'Nn2g11149' => 'nnu', 'Nn2g13389' => 'nnu', 'Nn4g25326' => 'nnu', 'Nn4g26290' => 'nnu', 'Nn5g29865' => 'nnu', 'Oeu004163.1' => 'oeu', 'Oeu006901.1' => 'oeu', 'Oeu010096.1' => 'oeu', 'Oeu024340.1' => 'oeu', 'Oeu048369.1' => 'oeu', 'Os01g0973000' => 'osa', 'Os03g0273800' => 'osa', 'Os03g0701200' => 'osa', 'Os03g0834050' => 'osa', 'Os07g0634400' => 'osa', 'Peaxi162Scf00092g01414' => 'pax', 'Peaxi162Scf00165g00818' => 'pax', 'Peaxi162Scf00309g00516' => 'pax', 'Peaxi162Scf00774g00218' => 'pax', 'PGR004G1824' => 'pgr', 'PGR004G2606' => 'pgr', 'PGR031G2716' => 'pgr', 'PGR102G2460' => 'pgr', 'PGR142G2599' => 'pgr', 'PGSC0003DMG400000843' => 'stu', 'PGSC0003DMG400008829' => 'stu', 'PGSC0003DMG400030418' => 'stu', 'PGSC0003DMG400031834' => 'stu', 'PGSC0003DMG401028300' => 'stu', 'PGSC0003DMG402028300' => 'stu', 'Phvul.001G219300' => 'pvu', 'Phvul.007G056000' => 'pvu', 'Phvul.007G208000' => 'pvu', 'Phvul.008G119500' => 'pvu', 'Phvul.010G011200' => 'pvu', 'Phvul.010G014800' => 'pvu', 'Phvul.011G062900' => 'pvu', 'Phvul.L007043' => 'pvu', 'Potri.001G242300' => 'ptr', 'Potri.002G185300' => 'ptr', 'Potri.006G086900' => 'ptr', 'Potri.008G151700' => 'ptr', 'Potri.009G033500' => 'ptr', 'Potri.010G089300' => 'ptr', 'Potri.014G110800' => 'ptr', 'Pp3c27_8130' => 'ppa', 'Pp3c6_27410' => 'ppa', 'PRCOL_00001659' => 'pco', 'PRCOL_00001927' => 'pco', 'PRCOL_00003649' => 'pco', 'Prupe.1G011600' => 'ppe', 'Prupe.3G000800' => 'ppe', 'Prupe.3G001100' => 'ppe', 'Prupe.6G072700' => 'ppe', 'Prupe.6G072800' => 'ppe', 'Prupe.6G257300' => 'ppe', 'Prupe.8G033000' => 'ppe', 'Psat0s2633g0080' => 'psa', 'Psat0s3396g0080' => 'psa', 'Psat0s3396g0200' => 'psa', 'Psat3g139080' => 'psa', 'Psat5g285080' => 'psa', 'Psat6g157760' => 'psa', 'Psat6g208440' => 'psa', 'Psat7g215320' => 'psa', 'Psat7g215400' => 'psa', 'Psat7g235600' => 'psa', 'Psat7g235760' => 'psa', 'PSO063G4603' => 'pso', 'PSO210G0182' => 'pso', 'PSO210G0196' => 'pso', 'PSO339G0394' => 'pso', 'PSO339G4127' => 'pso', 'PSO513G0064' => 'pso', 'PSO761G0079' => 'pso', 'QL01p031003' => 'qlo', 'QL01p031078' => 'qlo', 'QL06p003004' => 'qlo', 'QL07p048731' => 'qlo', 'QL09p037427' => 'qlo', 'RcHm_v2.0_Chr3g0466361' => 'rch', 'RcHm_v2.0_Chr3g0485571' => 'rch', 'RcHm_v2.0_Chr4g0416551' => 'rch', 'RcHm_v2.0_Chr5g0065831' => 'rch', 'Rhsim01G0230500' => 'rsi', 'Rhsim05G0194000' => 'rsi', 'Rhsim08G0250400' => 'rsi', 'Sabra02G0131000' => 'sbr', 'Sabra06G0066300' => 'sbr', 'Sabra08G0115500' => 'sbr', 'Sabra09G0023900' => 'sbr', 'Sabra10G0054000' => 'sbr', 'Sabra14G0081500' => 'sbr', 'Sabra16G0147100' => 'sbr', 'SalBow2G2957' => 'sbo', 'SalBow4G3320' => 'sbo', 'SalBow8G1894' => 'sbo', 'Sc07g0007950' => 'sci', 'Sc12g0001360' => 'sci', 'Sc13g0004330' => 'sci', 'Sc20g0005010' => 'sci', 'Sed0000361' => 'sed', 'Sed0001706' => 'sed', 'Sed0002422' => 'sed', 'Sed0004029' => 'sed', 'Sed0004602' => 'sed', 'Sed0004943' => 'sed', 'Sed0008646' => 'sed', 'Sed0023313' => 'sed', 'Sed0024843' => 'sed', 'SEGI_00081' => 'sgi', 'SEGI_00947' => 'sgi', 'SEGI_04046' => 'sgi', 'SEGI_06880' => 'sgi', 'SEGI_09736' => 'sgi', 'SEGI_12741' => 'sgi', 'SEGI_14530' => 'sgi', 'SEGI_20705' => 'sgi', 'SEGI_26088' => 'sgi', 'SEGI_28323' => 'sgi', 'SEGI_33343' => 'sgi', 'SGA_v2.0_scaffold126G33775' => 'sas', 'SGA_v2.0_scaffold2G01337' => 'sas', 'SGA_v2.0_scaffold38G15006' => 'sas', 'SGA_v2.0_scaffold39G15264' => 'sas', 'SGA_v2.0_scaffold453G51880' => 'sas', 'SHI12696' => 'shi', 'SMO367G1096' => 'smo', 'Solyc01g068630.3' => 'sly', 'Solyc05g011880.3' => 'sly', 'Solyc06g076300.3' => 'sly', 'Solyc09g010940.4' => 'sly', 'Solyc09g075890.3' => 'sly', 'Sopen01g030560' => 'spe', 'Sopen05g006630' => 'spe', 'Sopen06g032720' => 'spe', 'Sopen09g005660' => 'spe', 'Sopen09g030690' => 'spe', 'Sp4g14540' => 'spa', 'Sp4g20030' => 'spa', 'Sp5g01320' => 'spa', 'Sp6g21170' => 'spa', 'Sp6g21180' => 'spa', 'Sp6g21190' => 'spa', 'Sp6g40220' => 'spa', 'TAR362G0122' => 'tar', 'TAR362G1338' => 'tar', 'TAR369G0590' => 'tar', 'TAR371G0824' => 'tar', 'TAR622G1429' => 'tar', 'TAR623G0734' => 'tar', 'TAR625G0441' => 'tar', 'TAR629G0976' => 'tar', 'TAR633G1195' => 'tar', 'TAR636G2660' => 'tar', 'THA.LOC104799440' => 'tha', 'THA.LOC104800966' => 'tha', 'THA.LOC104806559' => 'tha', 'THA.LOC104810765' => 'tha', 'THA.LOC104816266' => 'tha', 'THA.LOC104817419' => 'tha', 'THA.LOC104827021' => 'tha', 'Thecc.01G327400' => 'tca', 'Thecc.04G229200' => 'tca', 'Thecc.05G037400' => 'tca', 'Thecc.09G318600' => 'tca', 'Thecc.09G318700' => 'tca', 'Thhalv10006238m.g' => 'esa', 'Thhalv10014321m.g' => 'esa', 'Thhalv10014335m.g' => 'esa', 'Thhalv10015826m.g' => 'esa', 'Thhalv10017107m.g' => 'esa', 'Thhalv10017180m.g' => 'esa', 'Thhalv10029339m.g' => 'esa', 'TPR.G1699' => 'tpr', 'TPR.G23609' => 'tpr', 'TPR.G3081' => 'tpr', 'TPR.G40397' => 'tpr', 'TPR.G5522' => 'tpr', 'TPR.G5618' => 'tpr', 'TPR.G5626' => 'tpr', 'TWI09G1632' => 'twi', 'TWI23G1230' => 'twi', 'TWI53G1064' => 'twi', 'TWI59G0751' => 'twi', 'TWI74G0947' => 'twi', 'TWI77G0337' => 'twi', 'TWI79G1254' => 'twi', 'unitig_0.g2341' => 'ugi', 'unitig_26.g10006' => 'ugi', 'unitig_26.g10008' => 'ugi', 'unitig_26.g9192' => 'ugi', 'vmacro14547' => 'vma', 'vmacro15333' => 'vma', 'vmacro18743' => 'vma', 'vmacro20166' => 'vma', 'VMungo0331G0523' => 'vmu', 'VMungo0331G1202' => 'vmu', 'VMungo0720G1228' => 'vmu', 'VMungo0720G1514' => 'vmu', 'VMungo1080G0169' => 'vmu', 'VMungo1127G1475' => 'vmu', 'VMungo1383G1208' => 'vmu', 'VMungo1383G1698' => 'vmu', 'Zm00001eb012270' => 'zma', 'Zm00001eb054100' => 'zma', 'Zm00001eb063350' => 'zma', 'Zm00001eb328560' => 'zma', 'Zm00001eb342820' => 'zma', 'Zm00001eb362210' => 'zma', 'Zm00001eb397730' => 'zma', 'Zm00001eb399750' => 'zma' ) $gf_id = 'HOM05D000959' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000959' ) $data_identifier = 'HOM05D000959' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 5, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 5, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 10, 'mbi' => (int) 3, 'mco' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 2, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 3, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 11, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399750' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000959', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '622', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p07100' => 'bna', 'A03p11720' => 'bna', 'A05p08300' => 'bna', 'A05p13380' => 'bna', 'A09p54130' => 'bna', 'A10p16690' => 'bna', 'A10p16700' => 'bna', 'A10p33390' => 'bna', 'Aa31LG10G16020' => 'aar', 'Aa31LG1G11810' => 'aar', 'Aa31LG1G11830' => 'aar', 'Aa31LG1G22510' => 'aar', 'Aa31LG5G4890' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5793' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2310' => 'aag', 'Actinidia08499' => 'ach', 'Actinidia11262' => 'ach', 'Actinidia23926' => 'ach', 'Actinidia34420' => 'ach', 'Actinidia36970' => 'ach', 'Ah.02g111220' => 'amhyb', 'Ah.15g097750' => 'amhyb', 'AL4G27500' => 'aly', 'AL6G11470' => 'aly', 'AL8G35950' => 'aly', 'AL8G35960' => 'aly', 'AL8G35970' => 'aly', 'Aqoxy1G00912' => 'aox', 'Aqoxy2G02253' => 'aox', 'Aqoxy2G02411' => 'aox', 'Aqoxy5G00485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BZ66YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K8ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM4FUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6BF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HFV7XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25JBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0YNNV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MAKK6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P70IT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP2Z6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V61LZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YWP64R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3S9AI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7PGHH' => 'arhy', 'AT2G32150' => 'ath', 'AT3G62040' => 'ath', 'AT5G02230' => 'ath', 'AT5G59480' => 'ath', 'AT5G59490' => 'ath', 'ATR0332G060' => 'atr', 'ATR0559G190' => 'atr', 'ATR0693G294' => 'atr', 'Atru.chr3.3975' => 'acertr', 'Atru.chr3.3976' => 'acertr', 'Atru.chr3.3977' => 'acertr', 'Atru.chr4.2498' => 'acertr', 'Atru.chr5.838' => 'acertr', 'Atru.chr8.1990' => 'acertr', 'Atru.chr8.1991' => 'acertr', 'Atru.chr8.1992' => 'acertr', 'AUR62001759' => 'cqu', 'AUR62009545' => 'cqu', 'AUR62010474' => 'cqu', 'AUR62025820' => 'cqu', 'AUR62030422' => 'cqu', 'AUR62033605' => 'cqu', 'AUR62038615' => 'cqu', 'AUR62041347' => 'cqu', 'BcaB01g04574' => 'bca', 'BcaB02g09263' => 'bca', 'BcaB02g10453' => 'bca', 'BcaB05g22513' => 'bca', 'BcaB08g36253' => 'bca', 'BcaB08g36254' => 'bca', 'BcaC01g06519' => 'bca', 'BcaC02g11889' => 'bca', 'BcaC03g14010' => 'bca', 'BcaC03g18439' => 'bca', 'BcaC04g19765' => 'bca', 'BcaC09g48432' => 'bca', 'BcaNung07302' => 'bca', 'BolC2t06040H' => 'bol', 'BolC2t07346H' => 'bol', 'BolC3t13817H' => 'bol', 'BolC4t22625H' => 'bol', 'BolC4t23297H' => 'bol', 'BolC8t51278H' => 'bol', 'BolC9t58050H' => 'bol', 'BolC9t58051H' => 'bol', 'BolC9t60163H' => 'bol', 'BraA02t04712Z' => 'bra', 'BraA02t05791Z' => 'bra', 'BraA03t10483Z' => 'bra', 'BraA05t19795Z' => 'bra', 'BraA05t20276Z' => 'bra', 'BraA09t40827Z' => 'bra', 'BraA10t43750Z' => 'bra', 'BraA10t43751Z' => 'bra', 'BraA10t45370Z' => 'bra', 'C02p00400' => 'bna', 'C02p12460' => 'bna', 'C03p13680' => 'bna', 'C04p10270' => 'bna', 'C04p17500' => 'bna', 'C08p37010' => 'bna', 'C09p51880' => 'bna', 'C09p51890' => 'bna', 'C09p74300' => 'bna', 'CAN.G179.26' => 'can', 'CAN.G3384.1' => 'can', 'CAN.G394.68' => 'can', 'CAN.G907.13' => 'can', 'CANSAT11G0012' => 'cansat', 'CANSAT25G1586' => 'cansat', 'CANSAT35G0735' => 'cansat', 'CANSAT54G0556' => 'cansat', 'CANSAT64G0356' => 'cansat', 'CANSAT78G2042' => 'cansat', 'CARHR125920' => 'chi', 'CARHR131910' => 'chi', 'CARHR172390' => 'chi', 'CARHR211140' => 'chi', 'CARHR285850' => 'chi', 'CARHR285860' => 'chi', 'Carub.0004s1347' => 'cru', 'Carub.0004s1960' => 'cru', 'Carub.0005s2880' => 'cru', 'Carub.0006s0107' => 'cru', 'Carub.0008s2015' => 'cru', 'Carub.0008s2016' => 'cru', 'Carub.0008s2017' => 'cru', 'Ca_01315_v3' => 'car', 'Ca_05063_v3' => 'car', 'Ca_10231_v3' => 'car', 'Ca_10913_v3' => 'car', 'Ca_19156_v3' => 'car', 'Ca_23644_v3' => 'car', 'Ca_26735_v3' => 'car', 'Cc01_g13130' => 'ccan', 'Cc02_g21690' => 'ccan', 'Cc03_g03600' => 'ccan', 'Cc06_g02510' => 'ccan', 'CDE02G1265' => 'cde', 'CDE05G0415' => 'cde', 'CDE08G1082' => 'cde', 'Cfa005780' => 'cfa', 'Cfa011522' => 'cfa', 'Cfa011523' => 'cfa', 'Cfa015627' => 'cfa', 'Cfa017359' => 'cfa', 'Ciclev10005687m.g' => 'ccl', 'Ciclev10012173m.g' => 'ccl', 'Ciclev10021621m.g' => 'ccl', 'Ciclev10028968m.g' => 'ccl', 'Ciclev10029907m.g' => 'ccl', 'CiPaw.01G164800' => 'cil', 'CiPaw.07G083700' => 'cil', 'CiPaw.07G127000' => 'cil', 'CiPaw.07G136900' => 'cil', 'CiPaw.08G081700' => 'cil', 'CiPaw.09G194600' => 'cil', 'CiPaw.10G146500' => 'cil', 'CiPaw.13G091500' => 'cil', 'CiPaw.13G091600' => 'cil', 'ClCG00G003390' => 'cla', 'ClCG01G007220' => 'cla', 'ClCG03G001370' => 'cla', 'ClCG04G008100' => 'cla', 'ClCG06G006110' => 'cla', 'ClCG06G006130' => 'cla', 'ClCG10G021210' => 'cla', 'COL.COLO4_07648' => 'col', 'COL.COLO4_07650' => 'col', 'COL.COLO4_07651' => 'col', 'COL.COLO4_14780' => 'col', 'COL.COLO4_18546' => 'col', 'COL.COLO4_18547' => 'col', 'COL.COLO4_23103' => 'col', 'COL.COLO4_30419' => 'col', 'COL.COLO4_34232' => 'col', 'Cpa.g.sc169.20' => 'cpa', 'Cpa.g.sc57.45' => 'cpa', 'Cpa.g.sc58.124' => 'cpa', 'Cpa.g.sc58.125' => 'cpa', 'Cpa.g.sc81.118' => 'cpa', 'Cpa.g.sc81.119' => 'cpa', 'Cre12.g524700' => 'cre', 'CsaV3_1G034430' => 'csa', 'CsaV3_1G034440' => 'csa', 'CsaV3_1G034450' => 'csa', 'CsaV3_3G034830' => 'csa', 'CsaV3_4G025090' => 'csa', 'CsaV3_5G018660' => 'csa', 'CsaV3_6G038160' => 'csa', 'CSS0003447' => 'camsi', 'CSS0017840' => 'camsi', 'CSS0019260' => 'camsi', 'CSS0040375' => 'camsi', 'CSS0042533' => 'camsi', 'DCAR_005960' => 'dca', 'DCAR_012104' => 'dca', 'DCAR_012105' => 'dca', 'DCAR_012293' => 'dca', 'DCAR_015632' => 'dca', 'DCAR_024602' => 'dca', 'DCAR_028752' => 'dca', 'Dinv06261' => 'din', 'Dinv13982' => 'din', 'Dinv17029' => 'din', 'Dinv18463' => 'din', 'Dinv33181' => 'din', 'Dinv35585' => 'din', 'Dinv37161' => 'din', 'Dinv42977' => 'din', 'Dinv43122' => 'din', 'Dinv44517' => 'din', 'Duzib093G0256' => 'dzi', 'Duzib106G1254' => 'dzi', 'Duzib128G1789' => 'dzi', 'Duzib133G0633' => 'dzi', 'Duzib138G0510' => 'dzi', 'Duzib150G1084' => 'dzi', 'Duzib168G0488' => 'dzi', 'Duzib168G1523' => 'dzi', 'Duzib170G0133' => 'dzi', 'ECA234G1433' => 'eca', 'ECA236G1432' => 'eca', 'ECA236G2256' => 'eca', 'ECA236G2365' => 'eca', 'ECA236G4830' => 'eca', 'ECA248G1505' => 'eca', 'EL10Ac3g06431' => 'bvu', 'EL10Ac5g12577' => 'bvu', 'EL10Ac6g13533' => 'bvu', 'EL10Ac7g16045' => 'bvu', 'Eucgr.A01281' => 'egr', 'Eucgr.B02326' => 'egr', 'Eucgr.H03532' => 'egr', 'Eucgr.K00553' => 'egr', 'Eucgr.K03116' => 'egr', 'FAN02G3963' => 'fan', 'FAN05G0438' => 'fan', 'FAN09G2434' => 'fan', 'FAN12G3984' => 'fan', 'FAN14G0798' => 'fan', 'FAN17G0652' => 'fan', 'FAN19G1988' => 'fan', 'FAN22G0632' => 'fan', 'FAN23G0387' => 'fan', 'FAN26G1323' => 'fan', 'FAN28G0666' => 'fan', 'FvH4_1g26080' => 'fve', 'FvH4_3g36780' => 'fve', 'FvH4_4g15270' => 'fve', 'FvH4_6g13490' => 'fve', 'Glyma.01G098700' => 'gma', 'Glyma.03G065900' => 'gma', 'Glyma.03G073754' => 'gma', 'Glyma.03G073758' => 'gma', 'Glyma.03G083200' => 'gma', 'Glyma.03G225500' => 'gma', 'Glyma.05G037766' => 'gma', 'Glyma.07G133500' => 'gma', 'Glyma.10G139400' => 'gma', 'Glyma.10G248900' => 'gma', 'Glyma.11G137800' => 'gma', 'Glyma.12G061300' => 'gma', 'Glyma.13G337900' => 'gma', 'Glyma.15G036600' => 'gma', 'Glyma.18G182800' => 'gma', 'Glyma.19G222500' => 'gma', 'Glyma.20G144800' => 'gma', 'Gohir.A01G222000' => 'ghi', 'Gohir.A03G044000' => 'ghi', 'Gohir.A03G044100' => 'ghi', 'Gohir.A04G083100' => 'ghi', 'Gohir.A07G127200' => 'ghi', 'Gohir.A07G132400' => 'ghi', 'Gohir.A08G000700' => 'ghi', 'Gohir.A11G327300' => 'ghi', 'Gohir.D01G211500' => 'ghi', 'Gohir.D03G123400' => 'ghi', 'Gohir.D03G123500' => 'ghi', 'Gohir.D04G121800' => 'ghi', 'Gohir.D07G131500' => 'ghi', 'Gohir.D07G136600' => 'ghi', 'Gohir.D08G011600' => 'ghi', 'Gohir.D11G346200' => 'ghi', 'Gorai.001G142800' => 'gra', 'Gorai.001G148700' => 'gra', 'Gorai.002G257300' => 'gra', 'Gorai.003G130000' => 'gra', 'Gorai.003G130100' => 'gra', 'Gorai.004G005300' => 'gra', 'Gorai.007G376500' => 'gra', 'Gorai.012G104700' => 'gra', 'GSVIVG01017946001' => 'vvi', 'GSVIVG01024928001' => 'vvi', 'GSVIVG01028227001' => 'vvi', 'GSVIVG01034151001' => 'vvi', 'HanXRQChr05g0135031' => 'han', 'HanXRQChr05g0135041' => 'han', 'HanXRQChr05g0140021' => 'han', 'HanXRQChr06g0178981' => 'han', 'HanXRQChr07g0188251' => 'han', 'HanXRQChr08g0235311' => 'han', 'HanXRQChr09g0271011' => 'han', 'HanXRQChr10g0293321' => 'han', 'HanXRQChr13g0388171' => 'han', 'Haze_00916' => 'cav', 'Haze_05063' => 'cav', 'Haze_20814' => 'cav', 'Haze_24128' => 'cav', 'Hma1.2p1_0745F.1_g212010' => 'hma', 'Hma1.2p1_0757F.1_g213260' => 'hma', 'Hma1.2p1_0936F.1_g238840' => 'hma', 'Hma1.2p1_1735F.1_g299890' => 'hma', 'Hma1.2p1_1861F.1_g305685' => 'hma', 'HPP92_003397' => 'vpl', 'HPP92_012597' => 'vpl', 'HPP92_015520' => 'vpl', 'HPP92_015539' => 'vpl', 'HPP92_020373' => 'vpl', 'Hund04938' => 'sun', 'Hund10677' => 'sun', 'Hund11033' => 'sun', 'Hund12155' => 'sun', 'Lalb_Chr01g0022551' => 'lal', 'Lalb_Chr03g0042341' => 'lal', 'Lalb_Chr07g0192931' => 'lal', 'Lalb_Chr12g0209551' => 'lal', 'Lalb_Chr19g0125251' => 'lal', 'Lalb_Chr19g0137891' => 'lal', 'Lalb_Chr21g0304641' => 'lal', 'Lalb_Chr21g0309881' => 'lal', 'Lj1A5T12' => 'lonja', 'Lj1C148G10' => 'lonja', 'Lj2A93T83' => 'lonja', 'Lj3A738G68' => 'lonja', 'Lj3C966T1' => 'lonja', 'Lj3g0018958' => 'lja', 'Lj3g0021831' => 'lja', 'Lj3g0025443' => 'lja', 'Lj4g0026809' => 'lja', 'Lj5g0012558' => 'lja', 'Lj5g0021586' => 'lja', 'Lsat_1_v5_gn_5_156840' => 'lsa', 'Lsat_1_v5_gn_8_73460' => 'lsa', 'Lsat_1_v5_gn_8_73481' => 'lsa', 'Lsat_1_v5_gn_9_31601' => 'lsa', 'Lsat_1_v5_gn_9_77320' => 'lsa', 'Manes.01G171300' => 'mes', 'Manes.01G171400' => 'mes', 'Manes.01G236100' => 'mes', 'Manes.02G130500' => 'mes', 'Manes.02G130600' => 'mes', 'Manes.03G180200' => 'mes', 'Manes.05G007000' => 'mes', 'Manes.08G084400' => 'mes', 'Manes.09G092600' => 'mes', 'Manes.15G027900' => 'mes', 'MBI04_g40948_MAGBIO' => 'mbi', 'MBI14_g12123_MAGBIO' => 'mbi', 'MBI18_g28915_MAGBIO' => 'mbi', 'MCO09G053' => 'mco', 'MCO11G782' => 'mco', 'MCO15G215' => 'mco', 'MD03G1088500' => 'mdo', 'MD03G1088600' => 'mdo', 'MD04G1130800' => 'mdo', 'MD09G1291700' => 'mdo', 'MD11G1097500' => 'mdo', 'MD11G1097600' => 'mdo', 'MD12G1143900' => 'mdo', 'MD13G1191400' => 'mdo', 'MD16G1191500' => 'mdo', 'Medtr1g085570' => 'mtr', 'Medtr1g104610' => 'mtr', 'Medtr2g097520' => 'mtr', 'Medtr4g021800' => 'mtr', 'Medtr4g021825' => 'mtr', 'Medtr4g064270' => 'mtr', 'Medtr4g064380' => 'mtr', 'Medtr7g062150' => 'mtr', 'MELO3C003138.2' => 'cme', 'MELO3C005187.2' => 'cme', 'MELO3C009252.2' => 'cme', 'MELO3C014481.2' => 'cme', 'MELO3C020616.2' => 'cme', 'MELO3C020617.2' => 'cme', 'MELO3C020618.2' => 'cme', 'Migut.G00328' => 'egut', 'Migut.J00320' => 'egut', 'Migut.L01000' => 'egut', 'Migut.L01953' => 'egut', 'MSTRG.10253' => 'ama', 'MSTRG.19077' => 'ama', 'MSTRG.26780' => 'ama', 'MSTRG.4023' => 'ama', 'MSTRG.5655' => 'ama', 'MSTRG.9992' => 'ama', 'Nitab4.5_0000043g0310' => 'nta', 'Nitab4.5_0000463g0080' => 'nta', 'Nitab4.5_0000705g0170' => 'nta', 'Nitab4.5_0001326g0060' => 'nta', 'Nitab4.5_0001628g0030' => 'nta', 'Nitab4.5_0002103g0110' => 'nta', 'Nitab4.5_0002946g0030' => 'nta', 'Nitab4.5_0004639g0030' => 'nta', 'Nn2g11149' => 'nnu', 'Nn2g13389' => 'nnu', 'Nn4g25326' => 'nnu', 'Nn4g26290' => 'nnu', 'Nn5g29865' => 'nnu', 'Oeu004163.1' => 'oeu', 'Oeu006901.1' => 'oeu', 'Oeu010096.1' => 'oeu', 'Oeu024340.1' => 'oeu', 'Oeu048369.1' => 'oeu', 'Os01g0973000' => 'osa', 'Os03g0273800' => 'osa', 'Os03g0701200' => 'osa', 'Os03g0834050' => 'osa', 'Os07g0634400' => 'osa', 'Peaxi162Scf00092g01414' => 'pax', 'Peaxi162Scf00165g00818' => 'pax', 'Peaxi162Scf00309g00516' => 'pax', 'Peaxi162Scf00774g00218' => 'pax', 'PGR004G1824' => 'pgr', 'PGR004G2606' => 'pgr', 'PGR031G2716' => 'pgr', 'PGR102G2460' => 'pgr', 'PGR142G2599' => 'pgr', 'PGSC0003DMG400000843' => 'stu', 'PGSC0003DMG400008829' => 'stu', 'PGSC0003DMG400030418' => 'stu', 'PGSC0003DMG400031834' => 'stu', 'PGSC0003DMG401028300' => 'stu', 'PGSC0003DMG402028300' => 'stu', 'Phvul.001G219300' => 'pvu', 'Phvul.007G056000' => 'pvu', 'Phvul.007G208000' => 'pvu', 'Phvul.008G119500' => 'pvu', 'Phvul.010G011200' => 'pvu', 'Phvul.010G014800' => 'pvu', 'Phvul.011G062900' => 'pvu', 'Phvul.L007043' => 'pvu', 'Potri.001G242300' => 'ptr', 'Potri.002G185300' => 'ptr', 'Potri.006G086900' => 'ptr', 'Potri.008G151700' => 'ptr', 'Potri.009G033500' => 'ptr', 'Potri.010G089300' => 'ptr', 'Potri.014G110800' => 'ptr', 'Pp3c27_8130' => 'ppa', 'Pp3c6_27410' => 'ppa', 'PRCOL_00001659' => 'pco', 'PRCOL_00001927' => 'pco', 'PRCOL_00003649' => 'pco', 'Prupe.1G011600' => 'ppe', 'Prupe.3G000800' => 'ppe', 'Prupe.3G001100' => 'ppe', 'Prupe.6G072700' => 'ppe', 'Prupe.6G072800' => 'ppe', 'Prupe.6G257300' => 'ppe', 'Prupe.8G033000' => 'ppe', 'Psat0s2633g0080' => 'psa', 'Psat0s3396g0080' => 'psa', 'Psat0s3396g0200' => 'psa', 'Psat3g139080' => 'psa', 'Psat5g285080' => 'psa', 'Psat6g157760' => 'psa', 'Psat6g208440' => 'psa', 'Psat7g215320' => 'psa', 'Psat7g215400' => 'psa', 'Psat7g235600' => 'psa', 'Psat7g235760' => 'psa', 'PSO063G4603' => 'pso', 'PSO210G0182' => 'pso', 'PSO210G0196' => 'pso', 'PSO339G0394' => 'pso', 'PSO339G4127' => 'pso', 'PSO513G0064' => 'pso', 'PSO761G0079' => 'pso', 'QL01p031003' => 'qlo', 'QL01p031078' => 'qlo', 'QL06p003004' => 'qlo', 'QL07p048731' => 'qlo', 'QL09p037427' => 'qlo', 'RcHm_v2.0_Chr3g0466361' => 'rch', 'RcHm_v2.0_Chr3g0485571' => 'rch', 'RcHm_v2.0_Chr4g0416551' => 'rch', 'RcHm_v2.0_Chr5g0065831' => 'rch', 'Rhsim01G0230500' => 'rsi', 'Rhsim05G0194000' => 'rsi', 'Rhsim08G0250400' => 'rsi', 'Sabra02G0131000' => 'sbr', 'Sabra06G0066300' => 'sbr', 'Sabra08G0115500' => 'sbr', 'Sabra09G0023900' => 'sbr', 'Sabra10G0054000' => 'sbr', 'Sabra14G0081500' => 'sbr', 'Sabra16G0147100' => 'sbr', 'SalBow2G2957' => 'sbo', 'SalBow4G3320' => 'sbo', 'SalBow8G1894' => 'sbo', 'Sc07g0007950' => 'sci', 'Sc12g0001360' => 'sci', 'Sc13g0004330' => 'sci', 'Sc20g0005010' => 'sci', 'Sed0000361' => 'sed', 'Sed0001706' => 'sed', 'Sed0002422' => 'sed', 'Sed0004029' => 'sed', 'Sed0004602' => 'sed', 'Sed0004943' => 'sed', 'Sed0008646' => 'sed', 'Sed0023313' => 'sed', 'Sed0024843' => 'sed', 'SEGI_00081' => 'sgi', 'SEGI_00947' => 'sgi', 'SEGI_04046' => 'sgi', 'SEGI_06880' => 'sgi', 'SEGI_09736' => 'sgi', 'SEGI_12741' => 'sgi', 'SEGI_14530' => 'sgi', 'SEGI_20705' => 'sgi', 'SEGI_26088' => 'sgi', 'SEGI_28323' => 'sgi', 'SEGI_33343' => 'sgi', 'SGA_v2.0_scaffold126G33775' => 'sas', 'SGA_v2.0_scaffold2G01337' => 'sas', 'SGA_v2.0_scaffold38G15006' => 'sas', 'SGA_v2.0_scaffold39G15264' => 'sas', 'SGA_v2.0_scaffold453G51880' => 'sas', 'SHI12696' => 'shi', 'SMO367G1096' => 'smo', 'Solyc01g068630.3' => 'sly', 'Solyc05g011880.3' => 'sly', 'Solyc06g076300.3' => 'sly', 'Solyc09g010940.4' => 'sly', 'Solyc09g075890.3' => 'sly', 'Sopen01g030560' => 'spe', 'Sopen05g006630' => 'spe', 'Sopen06g032720' => 'spe', 'Sopen09g005660' => 'spe', 'Sopen09g030690' => 'spe', 'Sp4g14540' => 'spa', 'Sp4g20030' => 'spa', 'Sp5g01320' => 'spa', 'Sp6g21170' => 'spa', 'Sp6g21180' => 'spa', 'Sp6g21190' => 'spa', 'Sp6g40220' => 'spa', 'TAR362G0122' => 'tar', 'TAR362G1338' => 'tar', 'TAR369G0590' => 'tar', 'TAR371G0824' => 'tar', 'TAR622G1429' => 'tar', 'TAR623G0734' => 'tar', 'TAR625G0441' => 'tar', 'TAR629G0976' => 'tar', 'TAR633G1195' => 'tar', 'TAR636G2660' => 'tar', 'THA.LOC104799440' => 'tha', 'THA.LOC104800966' => 'tha', 'THA.LOC104806559' => 'tha', 'THA.LOC104810765' => 'tha', 'THA.LOC104816266' => 'tha', 'THA.LOC104817419' => 'tha', 'THA.LOC104827021' => 'tha', 'Thecc.01G327400' => 'tca', 'Thecc.04G229200' => 'tca', 'Thecc.05G037400' => 'tca', 'Thecc.09G318600' => 'tca', 'Thecc.09G318700' => 'tca', 'Thhalv10006238m.g' => 'esa', 'Thhalv10014321m.g' => 'esa', 'Thhalv10014335m.g' => 'esa', 'Thhalv10015826m.g' => 'esa', 'Thhalv10017107m.g' => 'esa', 'Thhalv10017180m.g' => 'esa', 'Thhalv10029339m.g' => 'esa', 'TPR.G1699' => 'tpr', 'TPR.G23609' => 'tpr', 'TPR.G3081' => 'tpr', 'TPR.G40397' => 'tpr', 'TPR.G5522' => 'tpr', 'TPR.G5618' => 'tpr', 'TPR.G5626' => 'tpr', 'TWI09G1632' => 'twi', 'TWI23G1230' => 'twi', 'TWI53G1064' => 'twi', 'TWI59G0751' => 'twi', 'TWI74G0947' => 'twi', 'TWI77G0337' => 'twi', 'TWI79G1254' => 'twi', 'unitig_0.g2341' => 'ugi', 'unitig_26.g10006' => 'ugi', 'unitig_26.g10008' => 'ugi', 'unitig_26.g9192' => 'ugi', 'vmacro14547' => 'vma', 'vmacro15333' => 'vma', 'vmacro18743' => 'vma', 'vmacro20166' => 'vma', 'VMungo0331G0523' => 'vmu', 'VMungo0331G1202' => 'vmu', 'VMungo0720G1228' => 'vmu', 'VMungo0720G1514' => 'vmu', 'VMungo1080G0169' => 'vmu', 'VMungo1127G1475' => 'vmu', 'VMungo1383G1208' => 'vmu', 'VMungo1383G1698' => 'vmu', 'Zm00001eb012270' => 'zma', 'Zm00001eb054100' => 'zma', 'Zm00001eb063350' => 'zma', 'Zm00001eb328560' => 'zma', 'Zm00001eb342820' => 'zma', 'Zm00001eb362210' => 'zma', 'Zm00001eb397730' => 'zma', 'Zm00001eb399750' => 'zma' ), 'gf_id' => 'HOM05D000959', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000959' ), 'data_identifier' => 'HOM05D000959', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000959', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '622', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p07100' => 'bna', 'A03p11720' => 'bna', 'A05p08300' => 'bna', 'A05p13380' => 'bna', 'A09p54130' => 'bna', 'A10p16690' => 'bna', 'A10p16700' => 'bna', 'A10p33390' => 'bna', 'Aa31LG10G16020' => 'aar', 'Aa31LG1G11810' => 'aar', 'Aa31LG1G11830' => 'aar', 'Aa31LG1G22510' => 'aar', 'Aa31LG5G4890' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5793' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2310' => 'aag', 'Actinidia08499' => 'ach', 'Actinidia11262' => 'ach', 'Actinidia23926' => 'ach', 'Actinidia34420' => 'ach', 'Actinidia36970' => 'ach', 'Ah.02g111220' => 'amhyb', 'Ah.15g097750' => 'amhyb', 'AL4G27500' => 'aly', 'AL6G11470' => 'aly', 'AL8G35950' => 'aly', 'AL8G35960' => 'aly', 'AL8G35970' => 'aly', 'Aqoxy1G00912' => 'aox', 'Aqoxy2G02253' => 'aox', 'Aqoxy2G02411' => 'aox', 'Aqoxy5G00485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BZ66YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K8ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM4FUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6BF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HFV7XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25JBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0YNNV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MAKK6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P70IT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP2Z6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V61LZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YWP64R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3S9AI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7PGHH' => 'arhy', 'AT2G32150' => 'ath', 'AT3G62040' => 'ath', 'AT5G02230' => 'ath', 'AT5G59480' => 'ath', 'AT5G59490' => 'ath', 'ATR0332G060' => 'atr', 'ATR0559G190' => 'atr', 'ATR0693G294' => 'atr', 'Atru.chr3.3975' => 'acertr', 'Atru.chr3.3976' => 'acertr', 'Atru.chr3.3977' => 'acertr', 'Atru.chr4.2498' => 'acertr', 'Atru.chr5.838' => 'acertr', 'Atru.chr8.1990' => 'acertr', 'Atru.chr8.1991' => 'acertr', 'Atru.chr8.1992' => 'acertr', 'AUR62001759' => 'cqu', 'AUR62009545' => 'cqu', 'AUR62010474' => 'cqu', 'AUR62025820' => 'cqu', 'AUR62030422' => 'cqu', 'AUR62033605' => 'cqu', 'AUR62038615' => 'cqu', 'AUR62041347' => 'cqu', 'BcaB01g04574' => 'bca', 'BcaB02g09263' => 'bca', 'BcaB02g10453' => 'bca', 'BcaB05g22513' => 'bca', 'BcaB08g36253' => 'bca', 'BcaB08g36254' => 'bca', 'BcaC01g06519' => 'bca', 'BcaC02g11889' => 'bca', 'BcaC03g14010' => 'bca', 'BcaC03g18439' => 'bca', 'BcaC04g19765' => 'bca', 'BcaC09g48432' => 'bca', 'BcaNung07302' => 'bca', 'BolC2t06040H' => 'bol', 'BolC2t07346H' => 'bol', 'BolC3t13817H' => 'bol', 'BolC4t22625H' => 'bol', 'BolC4t23297H' => 'bol', 'BolC8t51278H' => 'bol', 'BolC9t58050H' => 'bol', 'BolC9t58051H' => 'bol', 'BolC9t60163H' => 'bol', 'BraA02t04712Z' => 'bra', 'BraA02t05791Z' => 'bra', 'BraA03t10483Z' => 'bra', 'BraA05t19795Z' => 'bra', 'BraA05t20276Z' => 'bra', 'BraA09t40827Z' => 'bra', 'BraA10t43750Z' => 'bra', 'BraA10t43751Z' => 'bra', 'BraA10t45370Z' => 'bra', 'C02p00400' => 'bna', 'C02p12460' => 'bna', 'C03p13680' => 'bna', 'C04p10270' => 'bna', 'C04p17500' => 'bna', 'C08p37010' => 'bna', 'C09p51880' => 'bna', 'C09p51890' => 'bna', 'C09p74300' => 'bna', 'CAN.G179.26' => 'can', 'CAN.G3384.1' => 'can', 'CAN.G394.68' => 'can', 'CAN.G907.13' => 'can', 'CANSAT11G0012' => 'cansat', 'CANSAT25G1586' => 'cansat', 'CANSAT35G0735' => 'cansat', 'CANSAT54G0556' => 'cansat', 'CANSAT64G0356' => 'cansat', 'CANSAT78G2042' => 'cansat', 'CARHR125920' => 'chi', 'CARHR131910' => 'chi', 'CARHR172390' => 'chi', 'CARHR211140' => 'chi', 'CARHR285850' => 'chi', 'CARHR285860' => 'chi', 'Carub.0004s1347' => 'cru', 'Carub.0004s1960' => 'cru', 'Carub.0005s2880' => 'cru', 'Carub.0006s0107' => 'cru', 'Carub.0008s2015' => 'cru', 'Carub.0008s2016' => 'cru', 'Carub.0008s2017' => 'cru', 'Ca_01315_v3' => 'car', 'Ca_05063_v3' => 'car', 'Ca_10231_v3' => 'car', 'Ca_10913_v3' => 'car', 'Ca_19156_v3' => 'car', 'Ca_23644_v3' => 'car', 'Ca_26735_v3' => 'car', 'Cc01_g13130' => 'ccan', 'Cc02_g21690' => 'ccan', 'Cc03_g03600' => 'ccan', 'Cc06_g02510' => 'ccan', 'CDE02G1265' => 'cde', 'CDE05G0415' => 'cde', 'CDE08G1082' => 'cde', 'Cfa005780' => 'cfa', 'Cfa011522' => 'cfa', 'Cfa011523' => 'cfa', 'Cfa015627' => 'cfa', 'Cfa017359' => 'cfa', 'Ciclev10005687m.g' => 'ccl', 'Ciclev10012173m.g' => 'ccl', 'Ciclev10021621m.g' => 'ccl', 'Ciclev10028968m.g' => 'ccl', 'Ciclev10029907m.g' => 'ccl', 'CiPaw.01G164800' => 'cil', 'CiPaw.07G083700' => 'cil', 'CiPaw.07G127000' => 'cil', 'CiPaw.07G136900' => 'cil', 'CiPaw.08G081700' => 'cil', 'CiPaw.09G194600' => 'cil', 'CiPaw.10G146500' => 'cil', 'CiPaw.13G091500' => 'cil', 'CiPaw.13G091600' => 'cil', 'ClCG00G003390' => 'cla', 'ClCG01G007220' => 'cla', 'ClCG03G001370' => 'cla', 'ClCG04G008100' => 'cla', 'ClCG06G006110' => 'cla', 'ClCG06G006130' => 'cla', 'ClCG10G021210' => 'cla', 'COL.COLO4_07648' => 'col', 'COL.COLO4_07650' => 'col', 'COL.COLO4_07651' => 'col', 'COL.COLO4_14780' => 'col', 'COL.COLO4_18546' => 'col', 'COL.COLO4_18547' => 'col', 'COL.COLO4_23103' => 'col', 'COL.COLO4_30419' => 'col', 'COL.COLO4_34232' => 'col', 'Cpa.g.sc169.20' => 'cpa', 'Cpa.g.sc57.45' => 'cpa', 'Cpa.g.sc58.124' => 'cpa', 'Cpa.g.sc58.125' => 'cpa', 'Cpa.g.sc81.118' => 'cpa', 'Cpa.g.sc81.119' => 'cpa', 'Cre12.g524700' => 'cre', 'CsaV3_1G034430' => 'csa', 'CsaV3_1G034440' => 'csa', 'CsaV3_1G034450' => 'csa', 'CsaV3_3G034830' => 'csa', 'CsaV3_4G025090' => 'csa', 'CsaV3_5G018660' => 'csa', 'CsaV3_6G038160' => 'csa', 'CSS0003447' => 'camsi', 'CSS0017840' => 'camsi', 'CSS0019260' => 'camsi', 'CSS0040375' => 'camsi', 'CSS0042533' => 'camsi', 'DCAR_005960' => 'dca', 'DCAR_012104' => 'dca', 'DCAR_012105' => 'dca', 'DCAR_012293' => 'dca', 'DCAR_015632' => 'dca', 'DCAR_024602' => 'dca', 'DCAR_028752' => 'dca', 'Dinv06261' => 'din', 'Dinv13982' => 'din', 'Dinv17029' => 'din', 'Dinv18463' => 'din', 'Dinv33181' => 'din', 'Dinv35585' => 'din', 'Dinv37161' => 'din', 'Dinv42977' => 'din', 'Dinv43122' => 'din', 'Dinv44517' => 'din', 'Duzib093G0256' => 'dzi', 'Duzib106G1254' => 'dzi', 'Duzib128G1789' => 'dzi', 'Duzib133G0633' => 'dzi', 'Duzib138G0510' => 'dzi', 'Duzib150G1084' => 'dzi', 'Duzib168G0488' => 'dzi', 'Duzib168G1523' => 'dzi', 'Duzib170G0133' => 'dzi', 'ECA234G1433' => 'eca', 'ECA236G1432' => 'eca', 'ECA236G2256' => 'eca', 'ECA236G2365' => 'eca', 'ECA236G4830' => 'eca', 'ECA248G1505' => 'eca', 'EL10Ac3g06431' => 'bvu', 'EL10Ac5g12577' => 'bvu', 'EL10Ac6g13533' => 'bvu', 'EL10Ac7g16045' => 'bvu', 'Eucgr.A01281' => 'egr', 'Eucgr.B02326' => 'egr', 'Eucgr.H03532' => 'egr', 'Eucgr.K00553' => 'egr', 'Eucgr.K03116' => 'egr', 'FAN02G3963' => 'fan', 'FAN05G0438' => 'fan', 'FAN09G2434' => 'fan', 'FAN12G3984' => 'fan', 'FAN14G0798' => 'fan', 'FAN17G0652' => 'fan', 'FAN19G1988' => 'fan', 'FAN22G0632' => 'fan', 'FAN23G0387' => 'fan', 'FAN26G1323' => 'fan', 'FAN28G0666' => 'fan', 'FvH4_1g26080' => 'fve', 'FvH4_3g36780' => 'fve', 'FvH4_4g15270' => 'fve', 'FvH4_6g13490' => 'fve', 'Glyma.01G098700' => 'gma', 'Glyma.03G065900' => 'gma', 'Glyma.03G073754' => 'gma', 'Glyma.03G073758' => 'gma', 'Glyma.03G083200' => 'gma', 'Glyma.03G225500' => 'gma', 'Glyma.05G037766' => 'gma', 'Glyma.07G133500' => 'gma', 'Glyma.10G139400' => 'gma', 'Glyma.10G248900' => 'gma', 'Glyma.11G137800' => 'gma', 'Glyma.12G061300' => 'gma', 'Glyma.13G337900' => 'gma', 'Glyma.15G036600' => 'gma', 'Glyma.18G182800' => 'gma', 'Glyma.19G222500' => 'gma', 'Glyma.20G144800' => 'gma', 'Gohir.A01G222000' => 'ghi', 'Gohir.A03G044000' => 'ghi', 'Gohir.A03G044100' => 'ghi', 'Gohir.A04G083100' => 'ghi', 'Gohir.A07G127200' => 'ghi', 'Gohir.A07G132400' => 'ghi', 'Gohir.A08G000700' => 'ghi', 'Gohir.A11G327300' => 'ghi', 'Gohir.D01G211500' => 'ghi', 'Gohir.D03G123400' => 'ghi', 'Gohir.D03G123500' => 'ghi', 'Gohir.D04G121800' => 'ghi', 'Gohir.D07G131500' => 'ghi', 'Gohir.D07G136600' => 'ghi', 'Gohir.D08G011600' => 'ghi', 'Gohir.D11G346200' => 'ghi', 'Gorai.001G142800' => 'gra', 'Gorai.001G148700' => 'gra', 'Gorai.002G257300' => 'gra', 'Gorai.003G130000' => 'gra', 'Gorai.003G130100' => 'gra', 'Gorai.004G005300' => 'gra', 'Gorai.007G376500' => 'gra', 'Gorai.012G104700' => 'gra', 'GSVIVG01017946001' => 'vvi', 'GSVIVG01024928001' => 'vvi', 'GSVIVG01028227001' => 'vvi', 'GSVIVG01034151001' => 'vvi', 'HanXRQChr05g0135031' => 'han', 'HanXRQChr05g0135041' => 'han', 'HanXRQChr05g0140021' => 'han', 'HanXRQChr06g0178981' => 'han', 'HanXRQChr07g0188251' => 'han', 'HanXRQChr08g0235311' => 'han', 'HanXRQChr09g0271011' => 'han', 'HanXRQChr10g0293321' => 'han', 'HanXRQChr13g0388171' => 'han', 'Haze_00916' => 'cav', 'Haze_05063' => 'cav', 'Haze_20814' => 'cav', 'Haze_24128' => 'cav', 'Hma1.2p1_0745F.1_g212010' => 'hma', 'Hma1.2p1_0757F.1_g213260' => 'hma', 'Hma1.2p1_0936F.1_g238840' => 'hma', 'Hma1.2p1_1735F.1_g299890' => 'hma', 'Hma1.2p1_1861F.1_g305685' => 'hma', 'HPP92_003397' => 'vpl', 'HPP92_012597' => 'vpl', 'HPP92_015520' => 'vpl', 'HPP92_015539' => 'vpl', 'HPP92_020373' => 'vpl', 'Hund04938' => 'sun', 'Hund10677' => 'sun', 'Hund11033' => 'sun', 'Hund12155' => 'sun', 'Lalb_Chr01g0022551' => 'lal', 'Lalb_Chr03g0042341' => 'lal', 'Lalb_Chr07g0192931' => 'lal', 'Lalb_Chr12g0209551' => 'lal', 'Lalb_Chr19g0125251' => 'lal', 'Lalb_Chr19g0137891' => 'lal', 'Lalb_Chr21g0304641' => 'lal', 'Lalb_Chr21g0309881' => 'lal', 'Lj1A5T12' => 'lonja', 'Lj1C148G10' => 'lonja', 'Lj2A93T83' => 'lonja', 'Lj3A738G68' => 'lonja', 'Lj3C966T1' => 'lonja', 'Lj3g0018958' => 'lja', 'Lj3g0021831' => 'lja', 'Lj3g0025443' => 'lja', 'Lj4g0026809' => 'lja', 'Lj5g0012558' => 'lja', 'Lj5g0021586' => 'lja', 'Lsat_1_v5_gn_5_156840' => 'lsa', 'Lsat_1_v5_gn_8_73460' => 'lsa', 'Lsat_1_v5_gn_8_73481' => 'lsa', 'Lsat_1_v5_gn_9_31601' => 'lsa', 'Lsat_1_v5_gn_9_77320' => 'lsa', 'Manes.01G171300' => 'mes', 'Manes.01G171400' => 'mes', 'Manes.01G236100' => 'mes', 'Manes.02G130500' => 'mes', 'Manes.02G130600' => 'mes', 'Manes.03G180200' => 'mes', 'Manes.05G007000' => 'mes', 'Manes.08G084400' => 'mes', 'Manes.09G092600' => 'mes', 'Manes.15G027900' => 'mes', 'MBI04_g40948_MAGBIO' => 'mbi', 'MBI14_g12123_MAGBIO' => 'mbi', 'MBI18_g28915_MAGBIO' => 'mbi', 'MCO09G053' => 'mco', 'MCO11G782' => 'mco', 'MCO15G215' => 'mco', 'MD03G1088500' => 'mdo', 'MD03G1088600' => 'mdo', 'MD04G1130800' => 'mdo', 'MD09G1291700' => 'mdo', 'MD11G1097500' => 'mdo', 'MD11G1097600' => 'mdo', 'MD12G1143900' => 'mdo', 'MD13G1191400' => 'mdo', 'MD16G1191500' => 'mdo', 'Medtr1g085570' => 'mtr', 'Medtr1g104610' => 'mtr', 'Medtr2g097520' => 'mtr', 'Medtr4g021800' => 'mtr', 'Medtr4g021825' => 'mtr', 'Medtr4g064270' => 'mtr', 'Medtr4g064380' => 'mtr', 'Medtr7g062150' => 'mtr', 'MELO3C003138.2' => 'cme', 'MELO3C005187.2' => 'cme', 'MELO3C009252.2' => 'cme', 'MELO3C014481.2' => 'cme', 'MELO3C020616.2' => 'cme', 'MELO3C020617.2' => 'cme', 'MELO3C020618.2' => 'cme', 'Migut.G00328' => 'egut', 'Migut.J00320' => 'egut', 'Migut.L01000' => 'egut', 'Migut.L01953' => 'egut', 'MSTRG.10253' => 'ama', 'MSTRG.19077' => 'ama', 'MSTRG.26780' => 'ama', 'MSTRG.4023' => 'ama', 'MSTRG.5655' => 'ama', 'MSTRG.9992' => 'ama', 'Nitab4.5_0000043g0310' => 'nta', 'Nitab4.5_0000463g0080' => 'nta', 'Nitab4.5_0000705g0170' => 'nta', 'Nitab4.5_0001326g0060' => 'nta', 'Nitab4.5_0001628g0030' => 'nta', 'Nitab4.5_0002103g0110' => 'nta', 'Nitab4.5_0002946g0030' => 'nta', 'Nitab4.5_0004639g0030' => 'nta', 'Nn2g11149' => 'nnu', 'Nn2g13389' => 'nnu', 'Nn4g25326' => 'nnu', 'Nn4g26290' => 'nnu', 'Nn5g29865' => 'nnu', 'Oeu004163.1' => 'oeu', 'Oeu006901.1' => 'oeu', 'Oeu010096.1' => 'oeu', 'Oeu024340.1' => 'oeu', 'Oeu048369.1' => 'oeu', 'Os01g0973000' => 'osa', 'Os03g0273800' => 'osa', 'Os03g0701200' => 'osa', 'Os03g0834050' => 'osa', 'Os07g0634400' => 'osa', 'Peaxi162Scf00092g01414' => 'pax', 'Peaxi162Scf00165g00818' => 'pax', 'Peaxi162Scf00309g00516' => 'pax', 'Peaxi162Scf00774g00218' => 'pax', 'PGR004G1824' => 'pgr', 'PGR004G2606' => 'pgr', 'PGR031G2716' => 'pgr', 'PGR102G2460' => 'pgr', 'PGR142G2599' => 'pgr', 'PGSC0003DMG400000843' => 'stu', 'PGSC0003DMG400008829' => 'stu', 'PGSC0003DMG400030418' => 'stu', 'PGSC0003DMG400031834' => 'stu', 'PGSC0003DMG401028300' => 'stu', 'PGSC0003DMG402028300' => 'stu', 'Phvul.001G219300' => 'pvu', 'Phvul.007G056000' => 'pvu', 'Phvul.007G208000' => 'pvu', 'Phvul.008G119500' => 'pvu', 'Phvul.010G011200' => 'pvu', 'Phvul.010G014800' => 'pvu', 'Phvul.011G062900' => 'pvu', 'Phvul.L007043' => 'pvu', 'Potri.001G242300' => 'ptr', 'Potri.002G185300' => 'ptr', 'Potri.006G086900' => 'ptr', 'Potri.008G151700' => 'ptr', 'Potri.009G033500' => 'ptr', 'Potri.010G089300' => 'ptr', 'Potri.014G110800' => 'ptr', 'Pp3c27_8130' => 'ppa', 'Pp3c6_27410' => 'ppa', 'PRCOL_00001659' => 'pco', 'PRCOL_00001927' => 'pco', 'PRCOL_00003649' => 'pco', 'Prupe.1G011600' => 'ppe', 'Prupe.3G000800' => 'ppe', 'Prupe.3G001100' => 'ppe', 'Prupe.6G072700' => 'ppe', 'Prupe.6G072800' => 'ppe', 'Prupe.6G257300' => 'ppe', 'Prupe.8G033000' => 'ppe', 'Psat0s2633g0080' => 'psa', 'Psat0s3396g0080' => 'psa', 'Psat0s3396g0200' => 'psa', 'Psat3g139080' => 'psa', 'Psat5g285080' => 'psa', 'Psat6g157760' => 'psa', 'Psat6g208440' => 'psa', 'Psat7g215320' => 'psa', 'Psat7g215400' => 'psa', 'Psat7g235600' => 'psa', 'Psat7g235760' => 'psa', 'PSO063G4603' => 'pso', 'PSO210G0182' => 'pso', 'PSO210G0196' => 'pso', 'PSO339G0394' => 'pso', 'PSO339G4127' => 'pso', 'PSO513G0064' => 'pso', 'PSO761G0079' => 'pso', 'QL01p031003' => 'qlo', 'QL01p031078' => 'qlo', 'QL06p003004' => 'qlo', 'QL07p048731' => 'qlo', 'QL09p037427' => 'qlo', 'RcHm_v2.0_Chr3g0466361' => 'rch', 'RcHm_v2.0_Chr3g0485571' => 'rch', 'RcHm_v2.0_Chr4g0416551' => 'rch', 'RcHm_v2.0_Chr5g0065831' => 'rch', 'Rhsim01G0230500' => 'rsi', 'Rhsim05G0194000' => 'rsi', 'Rhsim08G0250400' => 'rsi', 'Sabra02G0131000' => 'sbr', 'Sabra06G0066300' => 'sbr', 'Sabra08G0115500' => 'sbr', 'Sabra09G0023900' => 'sbr', 'Sabra10G0054000' => 'sbr', 'Sabra14G0081500' => 'sbr', 'Sabra16G0147100' => 'sbr', 'SalBow2G2957' => 'sbo', 'SalBow4G3320' => 'sbo', 'SalBow8G1894' => 'sbo', 'Sc07g0007950' => 'sci', 'Sc12g0001360' => 'sci', 'Sc13g0004330' => 'sci', 'Sc20g0005010' => 'sci', 'Sed0000361' => 'sed', 'Sed0001706' => 'sed', 'Sed0002422' => 'sed', 'Sed0004029' => 'sed', 'Sed0004602' => 'sed', 'Sed0004943' => 'sed', 'Sed0008646' => 'sed', 'Sed0023313' => 'sed', 'Sed0024843' => 'sed', 'SEGI_00081' => 'sgi', 'SEGI_00947' => 'sgi', 'SEGI_04046' => 'sgi', 'SEGI_06880' => 'sgi', 'SEGI_09736' => 'sgi', 'SEGI_12741' => 'sgi', 'SEGI_14530' => 'sgi', 'SEGI_20705' => 'sgi', 'SEGI_26088' => 'sgi', 'SEGI_28323' => 'sgi', 'SEGI_33343' => 'sgi', 'SGA_v2.0_scaffold126G33775' => 'sas', 'SGA_v2.0_scaffold2G01337' => 'sas', 'SGA_v2.0_scaffold38G15006' => 'sas', 'SGA_v2.0_scaffold39G15264' => 'sas', 'SGA_v2.0_scaffold453G51880' => 'sas', 'SHI12696' => 'shi', 'SMO367G1096' => 'smo', 'Solyc01g068630.3' => 'sly', 'Solyc05g011880.3' => 'sly', 'Solyc06g076300.3' => 'sly', 'Solyc09g010940.4' => 'sly', 'Solyc09g075890.3' => 'sly', 'Sopen01g030560' => 'spe', 'Sopen05g006630' => 'spe', 'Sopen06g032720' => 'spe', 'Sopen09g005660' => 'spe', 'Sopen09g030690' => 'spe', 'Sp4g14540' => 'spa', 'Sp4g20030' => 'spa', 'Sp5g01320' => 'spa', 'Sp6g21170' => 'spa', 'Sp6g21180' => 'spa', 'Sp6g21190' => 'spa', 'Sp6g40220' => 'spa', 'TAR362G0122' => 'tar', 'TAR362G1338' => 'tar', 'TAR369G0590' => 'tar', 'TAR371G0824' => 'tar', 'TAR622G1429' => 'tar', 'TAR623G0734' => 'tar', 'TAR625G0441' => 'tar', 'TAR629G0976' => 'tar', 'TAR633G1195' => 'tar', 'TAR636G2660' => 'tar', 'THA.LOC104799440' => 'tha', 'THA.LOC104800966' => 'tha', 'THA.LOC104806559' => 'tha', 'THA.LOC104810765' => 'tha', 'THA.LOC104816266' => 'tha', 'THA.LOC104817419' => 'tha', 'THA.LOC104827021' => 'tha', 'Thecc.01G327400' => 'tca', 'Thecc.04G229200' => 'tca', 'Thecc.05G037400' => 'tca', 'Thecc.09G318600' => 'tca', 'Thecc.09G318700' => 'tca', 'Thhalv10006238m.g' => 'esa', 'Thhalv10014321m.g' => 'esa', 'Thhalv10014335m.g' => 'esa', 'Thhalv10015826m.g' => 'esa', 'Thhalv10017107m.g' => 'esa', 'Thhalv10017180m.g' => 'esa', 'Thhalv10029339m.g' => 'esa', 'TPR.G1699' => 'tpr', 'TPR.G23609' => 'tpr', 'TPR.G3081' => 'tpr', 'TPR.G40397' => 'tpr', 'TPR.G5522' => 'tpr', 'TPR.G5618' => 'tpr', 'TPR.G5626' => 'tpr', 'TWI09G1632' => 'twi', 'TWI23G1230' => 'twi', 'TWI53G1064' => 'twi', 'TWI59G0751' => 'twi', 'TWI74G0947' => 'twi', 'TWI77G0337' => 'twi', 'TWI79G1254' => 'twi', 'unitig_0.g2341' => 'ugi', 'unitig_26.g10006' => 'ugi', 'unitig_26.g10008' => 'ugi', 'unitig_26.g9192' => 'ugi', 'vmacro14547' => 'vma', 'vmacro15333' => 'vma', 'vmacro18743' => 'vma', 'vmacro20166' => 'vma', 'VMungo0331G0523' => 'vmu', 'VMungo0331G1202' => 'vmu', 'VMungo0720G1228' => 'vmu', 'VMungo0720G1514' => 'vmu', 'VMungo1080G0169' => 'vmu', 'VMungo1127G1475' => 'vmu', 'VMungo1383G1208' => 'vmu', 'VMungo1383G1698' => 'vmu', 'Zm00001eb012270' => 'zma', 'Zm00001eb054100' => 'zma', 'Zm00001eb063350' => 'zma', 'Zm00001eb328560' => 'zma', 'Zm00001eb342820' => 'zma', 'Zm00001eb362210' => 'zma', 'Zm00001eb397730' => 'zma', 'Zm00001eb399750' => 'zma' ) $gf_id = 'HOM05D000959' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000959' ) $data_identifier = 'HOM05D000959' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 5, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 5, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 10, 'mbi' => (int) 3, 'mco' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 2, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 3, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 11, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399750' $species_info = array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ) $local_species = 'mco' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000959', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '622', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p07100' => 'bna', 'A03p11720' => 'bna', 'A05p08300' => 'bna', 'A05p13380' => 'bna', 'A09p54130' => 'bna', 'A10p16690' => 'bna', 'A10p16700' => 'bna', 'A10p33390' => 'bna', 'Aa31LG10G16020' => 'aar', 'Aa31LG1G11810' => 'aar', 'Aa31LG1G11830' => 'aar', 'Aa31LG1G22510' => 'aar', 'Aa31LG5G4890' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5793' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2310' => 'aag', 'Actinidia08499' => 'ach', 'Actinidia11262' => 'ach', 'Actinidia23926' => 'ach', 'Actinidia34420' => 'ach', 'Actinidia36970' => 'ach', 'Ah.02g111220' => 'amhyb', 'Ah.15g097750' => 'amhyb', 'AL4G27500' => 'aly', 'AL6G11470' => 'aly', 'AL8G35950' => 'aly', 'AL8G35960' => 'aly', 'AL8G35970' => 'aly', 'Aqoxy1G00912' => 'aox', 'Aqoxy2G02253' => 'aox', 'Aqoxy2G02411' => 'aox', 'Aqoxy5G00485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BZ66YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K8ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM4FUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6BF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HFV7XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25JBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0YNNV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MAKK6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P70IT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP2Z6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V61LZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YWP64R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3S9AI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7PGHH' => 'arhy', 'AT2G32150' => 'ath', 'AT3G62040' => 'ath', 'AT5G02230' => 'ath', 'AT5G59480' => 'ath', 'AT5G59490' => 'ath', 'ATR0332G060' => 'atr', 'ATR0559G190' => 'atr', 'ATR0693G294' => 'atr', 'Atru.chr3.3975' => 'acertr', 'Atru.chr3.3976' => 'acertr', 'Atru.chr3.3977' => 'acertr', 'Atru.chr4.2498' => 'acertr', 'Atru.chr5.838' => 'acertr', 'Atru.chr8.1990' => 'acertr', 'Atru.chr8.1991' => 'acertr', 'Atru.chr8.1992' => 'acertr', 'AUR62001759' => 'cqu', 'AUR62009545' => 'cqu', 'AUR62010474' => 'cqu', 'AUR62025820' => 'cqu', 'AUR62030422' => 'cqu', 'AUR62033605' => 'cqu', 'AUR62038615' => 'cqu', 'AUR62041347' => 'cqu', 'BcaB01g04574' => 'bca', 'BcaB02g09263' => 'bca', 'BcaB02g10453' => 'bca', 'BcaB05g22513' => 'bca', 'BcaB08g36253' => 'bca', 'BcaB08g36254' => 'bca', 'BcaC01g06519' => 'bca', 'BcaC02g11889' => 'bca', 'BcaC03g14010' => 'bca', 'BcaC03g18439' => 'bca', 'BcaC04g19765' => 'bca', 'BcaC09g48432' => 'bca', 'BcaNung07302' => 'bca', 'BolC2t06040H' => 'bol', 'BolC2t07346H' => 'bol', 'BolC3t13817H' => 'bol', 'BolC4t22625H' => 'bol', 'BolC4t23297H' => 'bol', 'BolC8t51278H' => 'bol', 'BolC9t58050H' => 'bol', 'BolC9t58051H' => 'bol', 'BolC9t60163H' => 'bol', 'BraA02t04712Z' => 'bra', 'BraA02t05791Z' => 'bra', 'BraA03t10483Z' => 'bra', 'BraA05t19795Z' => 'bra', 'BraA05t20276Z' => 'bra', 'BraA09t40827Z' => 'bra', 'BraA10t43750Z' => 'bra', 'BraA10t43751Z' => 'bra', 'BraA10t45370Z' => 'bra', 'C02p00400' => 'bna', 'C02p12460' => 'bna', 'C03p13680' => 'bna', 'C04p10270' => 'bna', 'C04p17500' => 'bna', 'C08p37010' => 'bna', 'C09p51880' => 'bna', 'C09p51890' => 'bna', 'C09p74300' => 'bna', 'CAN.G179.26' => 'can', 'CAN.G3384.1' => 'can', 'CAN.G394.68' => 'can', 'CAN.G907.13' => 'can', 'CANSAT11G0012' => 'cansat', 'CANSAT25G1586' => 'cansat', 'CANSAT35G0735' => 'cansat', 'CANSAT54G0556' => 'cansat', 'CANSAT64G0356' => 'cansat', 'CANSAT78G2042' => 'cansat', 'CARHR125920' => 'chi', 'CARHR131910' => 'chi', 'CARHR172390' => 'chi', 'CARHR211140' => 'chi', 'CARHR285850' => 'chi', 'CARHR285860' => 'chi', 'Carub.0004s1347' => 'cru', 'Carub.0004s1960' => 'cru', 'Carub.0005s2880' => 'cru', 'Carub.0006s0107' => 'cru', 'Carub.0008s2015' => 'cru', 'Carub.0008s2016' => 'cru', 'Carub.0008s2017' => 'cru', 'Ca_01315_v3' => 'car', 'Ca_05063_v3' => 'car', 'Ca_10231_v3' => 'car', 'Ca_10913_v3' => 'car', 'Ca_19156_v3' => 'car', 'Ca_23644_v3' => 'car', 'Ca_26735_v3' => 'car', 'Cc01_g13130' => 'ccan', 'Cc02_g21690' => 'ccan', 'Cc03_g03600' => 'ccan', 'Cc06_g02510' => 'ccan', 'CDE02G1265' => 'cde', 'CDE05G0415' => 'cde', 'CDE08G1082' => 'cde', 'Cfa005780' => 'cfa', 'Cfa011522' => 'cfa', 'Cfa011523' => 'cfa', 'Cfa015627' => 'cfa', 'Cfa017359' => 'cfa', 'Ciclev10005687m.g' => 'ccl', 'Ciclev10012173m.g' => 'ccl', 'Ciclev10021621m.g' => 'ccl', 'Ciclev10028968m.g' => 'ccl', 'Ciclev10029907m.g' => 'ccl', 'CiPaw.01G164800' => 'cil', 'CiPaw.07G083700' => 'cil', 'CiPaw.07G127000' => 'cil', 'CiPaw.07G136900' => 'cil', 'CiPaw.08G081700' => 'cil', 'CiPaw.09G194600' => 'cil', 'CiPaw.10G146500' => 'cil', 'CiPaw.13G091500' => 'cil', 'CiPaw.13G091600' => 'cil', 'ClCG00G003390' => 'cla', 'ClCG01G007220' => 'cla', 'ClCG03G001370' => 'cla', 'ClCG04G008100' => 'cla', 'ClCG06G006110' => 'cla', 'ClCG06G006130' => 'cla', 'ClCG10G021210' => 'cla', 'COL.COLO4_07648' => 'col', 'COL.COLO4_07650' => 'col', 'COL.COLO4_07651' => 'col', 'COL.COLO4_14780' => 'col', 'COL.COLO4_18546' => 'col', 'COL.COLO4_18547' => 'col', 'COL.COLO4_23103' => 'col', 'COL.COLO4_30419' => 'col', 'COL.COLO4_34232' => 'col', 'Cpa.g.sc169.20' => 'cpa', 'Cpa.g.sc57.45' => 'cpa', 'Cpa.g.sc58.124' => 'cpa', 'Cpa.g.sc58.125' => 'cpa', 'Cpa.g.sc81.118' => 'cpa', 'Cpa.g.sc81.119' => 'cpa', 'Cre12.g524700' => 'cre', 'CsaV3_1G034430' => 'csa', 'CsaV3_1G034440' => 'csa', 'CsaV3_1G034450' => 'csa', 'CsaV3_3G034830' => 'csa', 'CsaV3_4G025090' => 'csa', 'CsaV3_5G018660' => 'csa', 'CsaV3_6G038160' => 'csa', 'CSS0003447' => 'camsi', 'CSS0017840' => 'camsi', 'CSS0019260' => 'camsi', 'CSS0040375' => 'camsi', 'CSS0042533' => 'camsi', 'DCAR_005960' => 'dca', 'DCAR_012104' => 'dca', 'DCAR_012105' => 'dca', 'DCAR_012293' => 'dca', 'DCAR_015632' => 'dca', 'DCAR_024602' => 'dca', 'DCAR_028752' => 'dca', 'Dinv06261' => 'din', 'Dinv13982' => 'din', 'Dinv17029' => 'din', 'Dinv18463' => 'din', 'Dinv33181' => 'din', 'Dinv35585' => 'din', 'Dinv37161' => 'din', 'Dinv42977' => 'din', 'Dinv43122' => 'din', 'Dinv44517' => 'din', 'Duzib093G0256' => 'dzi', 'Duzib106G1254' => 'dzi', 'Duzib128G1789' => 'dzi', 'Duzib133G0633' => 'dzi', 'Duzib138G0510' => 'dzi', 'Duzib150G1084' => 'dzi', 'Duzib168G0488' => 'dzi', 'Duzib168G1523' => 'dzi', 'Duzib170G0133' => 'dzi', 'ECA234G1433' => 'eca', 'ECA236G1432' => 'eca', 'ECA236G2256' => 'eca', 'ECA236G2365' => 'eca', 'ECA236G4830' => 'eca', 'ECA248G1505' => 'eca', 'EL10Ac3g06431' => 'bvu', 'EL10Ac5g12577' => 'bvu', 'EL10Ac6g13533' => 'bvu', 'EL10Ac7g16045' => 'bvu', 'Eucgr.A01281' => 'egr', 'Eucgr.B02326' => 'egr', 'Eucgr.H03532' => 'egr', 'Eucgr.K00553' => 'egr', 'Eucgr.K03116' => 'egr', 'FAN02G3963' => 'fan', 'FAN05G0438' => 'fan', 'FAN09G2434' => 'fan', 'FAN12G3984' => 'fan', 'FAN14G0798' => 'fan', 'FAN17G0652' => 'fan', 'FAN19G1988' => 'fan', 'FAN22G0632' => 'fan', 'FAN23G0387' => 'fan', 'FAN26G1323' => 'fan', 'FAN28G0666' => 'fan', 'FvH4_1g26080' => 'fve', 'FvH4_3g36780' => 'fve', 'FvH4_4g15270' => 'fve', 'FvH4_6g13490' => 'fve', 'Glyma.01G098700' => 'gma', 'Glyma.03G065900' => 'gma', 'Glyma.03G073754' => 'gma', 'Glyma.03G073758' => 'gma', 'Glyma.03G083200' => 'gma', 'Glyma.03G225500' => 'gma', 'Glyma.05G037766' => 'gma', 'Glyma.07G133500' => 'gma', 'Glyma.10G139400' => 'gma', 'Glyma.10G248900' => 'gma', 'Glyma.11G137800' => 'gma', 'Glyma.12G061300' => 'gma', 'Glyma.13G337900' => 'gma', 'Glyma.15G036600' => 'gma', 'Glyma.18G182800' => 'gma', 'Glyma.19G222500' => 'gma', 'Glyma.20G144800' => 'gma', 'Gohir.A01G222000' => 'ghi', 'Gohir.A03G044000' => 'ghi', 'Gohir.A03G044100' => 'ghi', 'Gohir.A04G083100' => 'ghi', 'Gohir.A07G127200' => 'ghi', 'Gohir.A07G132400' => 'ghi', 'Gohir.A08G000700' => 'ghi', 'Gohir.A11G327300' => 'ghi', 'Gohir.D01G211500' => 'ghi', 'Gohir.D03G123400' => 'ghi', 'Gohir.D03G123500' => 'ghi', 'Gohir.D04G121800' => 'ghi', 'Gohir.D07G131500' => 'ghi', 'Gohir.D07G136600' => 'ghi', 'Gohir.D08G011600' => 'ghi', 'Gohir.D11G346200' => 'ghi', 'Gorai.001G142800' => 'gra', 'Gorai.001G148700' => 'gra', 'Gorai.002G257300' => 'gra', 'Gorai.003G130000' => 'gra', 'Gorai.003G130100' => 'gra', 'Gorai.004G005300' => 'gra', 'Gorai.007G376500' => 'gra', 'Gorai.012G104700' => 'gra', 'GSVIVG01017946001' => 'vvi', 'GSVIVG01024928001' => 'vvi', 'GSVIVG01028227001' => 'vvi', 'GSVIVG01034151001' => 'vvi', 'HanXRQChr05g0135031' => 'han', 'HanXRQChr05g0135041' => 'han', 'HanXRQChr05g0140021' => 'han', 'HanXRQChr06g0178981' => 'han', 'HanXRQChr07g0188251' => 'han', 'HanXRQChr08g0235311' => 'han', 'HanXRQChr09g0271011' => 'han', 'HanXRQChr10g0293321' => 'han', 'HanXRQChr13g0388171' => 'han', 'Haze_00916' => 'cav', 'Haze_05063' => 'cav', 'Haze_20814' => 'cav', 'Haze_24128' => 'cav', 'Hma1.2p1_0745F.1_g212010' => 'hma', 'Hma1.2p1_0757F.1_g213260' => 'hma', 'Hma1.2p1_0936F.1_g238840' => 'hma', 'Hma1.2p1_1735F.1_g299890' => 'hma', 'Hma1.2p1_1861F.1_g305685' => 'hma', 'HPP92_003397' => 'vpl', 'HPP92_012597' => 'vpl', 'HPP92_015520' => 'vpl', 'HPP92_015539' => 'vpl', 'HPP92_020373' => 'vpl', 'Hund04938' => 'sun', 'Hund10677' => 'sun', 'Hund11033' => 'sun', 'Hund12155' => 'sun', 'Lalb_Chr01g0022551' => 'lal', 'Lalb_Chr03g0042341' => 'lal', 'Lalb_Chr07g0192931' => 'lal', 'Lalb_Chr12g0209551' => 'lal', 'Lalb_Chr19g0125251' => 'lal', 'Lalb_Chr19g0137891' => 'lal', 'Lalb_Chr21g0304641' => 'lal', 'Lalb_Chr21g0309881' => 'lal', 'Lj1A5T12' => 'lonja', 'Lj1C148G10' => 'lonja', 'Lj2A93T83' => 'lonja', 'Lj3A738G68' => 'lonja', 'Lj3C966T1' => 'lonja', 'Lj3g0018958' => 'lja', 'Lj3g0021831' => 'lja', 'Lj3g0025443' => 'lja', 'Lj4g0026809' => 'lja', 'Lj5g0012558' => 'lja', 'Lj5g0021586' => 'lja', 'Lsat_1_v5_gn_5_156840' => 'lsa', 'Lsat_1_v5_gn_8_73460' => 'lsa', 'Lsat_1_v5_gn_8_73481' => 'lsa', 'Lsat_1_v5_gn_9_31601' => 'lsa', 'Lsat_1_v5_gn_9_77320' => 'lsa', 'Manes.01G171300' => 'mes', 'Manes.01G171400' => 'mes', 'Manes.01G236100' => 'mes', 'Manes.02G130500' => 'mes', 'Manes.02G130600' => 'mes', 'Manes.03G180200' => 'mes', 'Manes.05G007000' => 'mes', 'Manes.08G084400' => 'mes', 'Manes.09G092600' => 'mes', 'Manes.15G027900' => 'mes', 'MBI04_g40948_MAGBIO' => 'mbi', 'MBI14_g12123_MAGBIO' => 'mbi', 'MBI18_g28915_MAGBIO' => 'mbi', 'MCO09G053' => 'mco', 'MCO11G782' => 'mco', 'MCO15G215' => 'mco', 'MD03G1088500' => 'mdo', 'MD03G1088600' => 'mdo', 'MD04G1130800' => 'mdo', 'MD09G1291700' => 'mdo', 'MD11G1097500' => 'mdo', 'MD11G1097600' => 'mdo', 'MD12G1143900' => 'mdo', 'MD13G1191400' => 'mdo', 'MD16G1191500' => 'mdo', 'Medtr1g085570' => 'mtr', 'Medtr1g104610' => 'mtr', 'Medtr2g097520' => 'mtr', 'Medtr4g021800' => 'mtr', 'Medtr4g021825' => 'mtr', 'Medtr4g064270' => 'mtr', 'Medtr4g064380' => 'mtr', 'Medtr7g062150' => 'mtr', 'MELO3C003138.2' => 'cme', 'MELO3C005187.2' => 'cme', 'MELO3C009252.2' => 'cme', 'MELO3C014481.2' => 'cme', 'MELO3C020616.2' => 'cme', 'MELO3C020617.2' => 'cme', 'MELO3C020618.2' => 'cme', 'Migut.G00328' => 'egut', 'Migut.J00320' => 'egut', 'Migut.L01000' => 'egut', 'Migut.L01953' => 'egut', 'MSTRG.10253' => 'ama', 'MSTRG.19077' => 'ama', 'MSTRG.26780' => 'ama', 'MSTRG.4023' => 'ama', 'MSTRG.5655' => 'ama', 'MSTRG.9992' => 'ama', 'Nitab4.5_0000043g0310' => 'nta', 'Nitab4.5_0000463g0080' => 'nta', 'Nitab4.5_0000705g0170' => 'nta', 'Nitab4.5_0001326g0060' => 'nta', 'Nitab4.5_0001628g0030' => 'nta', 'Nitab4.5_0002103g0110' => 'nta', 'Nitab4.5_0002946g0030' => 'nta', 'Nitab4.5_0004639g0030' => 'nta', 'Nn2g11149' => 'nnu', 'Nn2g13389' => 'nnu', 'Nn4g25326' => 'nnu', 'Nn4g26290' => 'nnu', 'Nn5g29865' => 'nnu', 'Oeu004163.1' => 'oeu', 'Oeu006901.1' => 'oeu', 'Oeu010096.1' => 'oeu', 'Oeu024340.1' => 'oeu', 'Oeu048369.1' => 'oeu', 'Os01g0973000' => 'osa', 'Os03g0273800' => 'osa', 'Os03g0701200' => 'osa', 'Os03g0834050' => 'osa', 'Os07g0634400' => 'osa', 'Peaxi162Scf00092g01414' => 'pax', 'Peaxi162Scf00165g00818' => 'pax', 'Peaxi162Scf00309g00516' => 'pax', 'Peaxi162Scf00774g00218' => 'pax', 'PGR004G1824' => 'pgr', 'PGR004G2606' => 'pgr', 'PGR031G2716' => 'pgr', 'PGR102G2460' => 'pgr', 'PGR142G2599' => 'pgr', 'PGSC0003DMG400000843' => 'stu', 'PGSC0003DMG400008829' => 'stu', 'PGSC0003DMG400030418' => 'stu', 'PGSC0003DMG400031834' => 'stu', 'PGSC0003DMG401028300' => 'stu', 'PGSC0003DMG402028300' => 'stu', 'Phvul.001G219300' => 'pvu', 'Phvul.007G056000' => 'pvu', 'Phvul.007G208000' => 'pvu', 'Phvul.008G119500' => 'pvu', 'Phvul.010G011200' => 'pvu', 'Phvul.010G014800' => 'pvu', 'Phvul.011G062900' => 'pvu', 'Phvul.L007043' => 'pvu', 'Potri.001G242300' => 'ptr', 'Potri.002G185300' => 'ptr', 'Potri.006G086900' => 'ptr', 'Potri.008G151700' => 'ptr', 'Potri.009G033500' => 'ptr', 'Potri.010G089300' => 'ptr', 'Potri.014G110800' => 'ptr', 'Pp3c27_8130' => 'ppa', 'Pp3c6_27410' => 'ppa', 'PRCOL_00001659' => 'pco', 'PRCOL_00001927' => 'pco', 'PRCOL_00003649' => 'pco', 'Prupe.1G011600' => 'ppe', 'Prupe.3G000800' => 'ppe', 'Prupe.3G001100' => 'ppe', 'Prupe.6G072700' => 'ppe', 'Prupe.6G072800' => 'ppe', 'Prupe.6G257300' => 'ppe', 'Prupe.8G033000' => 'ppe', 'Psat0s2633g0080' => 'psa', 'Psat0s3396g0080' => 'psa', 'Psat0s3396g0200' => 'psa', 'Psat3g139080' => 'psa', 'Psat5g285080' => 'psa', 'Psat6g157760' => 'psa', 'Psat6g208440' => 'psa', 'Psat7g215320' => 'psa', 'Psat7g215400' => 'psa', 'Psat7g235600' => 'psa', 'Psat7g235760' => 'psa', 'PSO063G4603' => 'pso', 'PSO210G0182' => 'pso', 'PSO210G0196' => 'pso', 'PSO339G0394' => 'pso', 'PSO339G4127' => 'pso', 'PSO513G0064' => 'pso', 'PSO761G0079' => 'pso', 'QL01p031003' => 'qlo', 'QL01p031078' => 'qlo', 'QL06p003004' => 'qlo', 'QL07p048731' => 'qlo', 'QL09p037427' => 'qlo', 'RcHm_v2.0_Chr3g0466361' => 'rch', 'RcHm_v2.0_Chr3g0485571' => 'rch', 'RcHm_v2.0_Chr4g0416551' => 'rch', 'RcHm_v2.0_Chr5g0065831' => 'rch', 'Rhsim01G0230500' => 'rsi', 'Rhsim05G0194000' => 'rsi', 'Rhsim08G0250400' => 'rsi', 'Sabra02G0131000' => 'sbr', 'Sabra06G0066300' => 'sbr', 'Sabra08G0115500' => 'sbr', 'Sabra09G0023900' => 'sbr', 'Sabra10G0054000' => 'sbr', 'Sabra14G0081500' => 'sbr', 'Sabra16G0147100' => 'sbr', 'SalBow2G2957' => 'sbo', 'SalBow4G3320' => 'sbo', 'SalBow8G1894' => 'sbo', 'Sc07g0007950' => 'sci', 'Sc12g0001360' => 'sci', 'Sc13g0004330' => 'sci', 'Sc20g0005010' => 'sci', 'Sed0000361' => 'sed', 'Sed0001706' => 'sed', 'Sed0002422' => 'sed', 'Sed0004029' => 'sed', 'Sed0004602' => 'sed', 'Sed0004943' => 'sed', 'Sed0008646' => 'sed', 'Sed0023313' => 'sed', 'Sed0024843' => 'sed', 'SEGI_00081' => 'sgi', 'SEGI_00947' => 'sgi', 'SEGI_04046' => 'sgi', 'SEGI_06880' => 'sgi', 'SEGI_09736' => 'sgi', 'SEGI_12741' => 'sgi', 'SEGI_14530' => 'sgi', 'SEGI_20705' => 'sgi', 'SEGI_26088' => 'sgi', 'SEGI_28323' => 'sgi', 'SEGI_33343' => 'sgi', 'SGA_v2.0_scaffold126G33775' => 'sas', 'SGA_v2.0_scaffold2G01337' => 'sas', 'SGA_v2.0_scaffold38G15006' => 'sas', 'SGA_v2.0_scaffold39G15264' => 'sas', 'SGA_v2.0_scaffold453G51880' => 'sas', 'SHI12696' => 'shi', 'SMO367G1096' => 'smo', 'Solyc01g068630.3' => 'sly', 'Solyc05g011880.3' => 'sly', 'Solyc06g076300.3' => 'sly', 'Solyc09g010940.4' => 'sly', 'Solyc09g075890.3' => 'sly', 'Sopen01g030560' => 'spe', 'Sopen05g006630' => 'spe', 'Sopen06g032720' => 'spe', 'Sopen09g005660' => 'spe', 'Sopen09g030690' => 'spe', 'Sp4g14540' => 'spa', 'Sp4g20030' => 'spa', 'Sp5g01320' => 'spa', 'Sp6g21170' => 'spa', 'Sp6g21180' => 'spa', 'Sp6g21190' => 'spa', 'Sp6g40220' => 'spa', 'TAR362G0122' => 'tar', 'TAR362G1338' => 'tar', 'TAR369G0590' => 'tar', 'TAR371G0824' => 'tar', 'TAR622G1429' => 'tar', 'TAR623G0734' => 'tar', 'TAR625G0441' => 'tar', 'TAR629G0976' => 'tar', 'TAR633G1195' => 'tar', 'TAR636G2660' => 'tar', 'THA.LOC104799440' => 'tha', 'THA.LOC104800966' => 'tha', 'THA.LOC104806559' => 'tha', 'THA.LOC104810765' => 'tha', 'THA.LOC104816266' => 'tha', 'THA.LOC104817419' => 'tha', 'THA.LOC104827021' => 'tha', 'Thecc.01G327400' => 'tca', 'Thecc.04G229200' => 'tca', 'Thecc.05G037400' => 'tca', 'Thecc.09G318600' => 'tca', 'Thecc.09G318700' => 'tca', 'Thhalv10006238m.g' => 'esa', 'Thhalv10014321m.g' => 'esa', 'Thhalv10014335m.g' => 'esa', 'Thhalv10015826m.g' => 'esa', 'Thhalv10017107m.g' => 'esa', 'Thhalv10017180m.g' => 'esa', 'Thhalv10029339m.g' => 'esa', 'TPR.G1699' => 'tpr', 'TPR.G23609' => 'tpr', 'TPR.G3081' => 'tpr', 'TPR.G40397' => 'tpr', 'TPR.G5522' => 'tpr', 'TPR.G5618' => 'tpr', 'TPR.G5626' => 'tpr', 'TWI09G1632' => 'twi', 'TWI23G1230' => 'twi', 'TWI53G1064' => 'twi', 'TWI59G0751' => 'twi', 'TWI74G0947' => 'twi', 'TWI77G0337' => 'twi', 'TWI79G1254' => 'twi', 'unitig_0.g2341' => 'ugi', 'unitig_26.g10006' => 'ugi', 'unitig_26.g10008' => 'ugi', 'unitig_26.g9192' => 'ugi', 'vmacro14547' => 'vma', 'vmacro15333' => 'vma', 'vmacro18743' => 'vma', 'vmacro20166' => 'vma', 'VMungo0331G0523' => 'vmu', 'VMungo0331G1202' => 'vmu', 'VMungo0720G1228' => 'vmu', 'VMungo0720G1514' => 'vmu', 'VMungo1080G0169' => 'vmu', 'VMungo1127G1475' => 'vmu', 'VMungo1383G1208' => 'vmu', 'VMungo1383G1698' => 'vmu', 'Zm00001eb012270' => 'zma', 'Zm00001eb054100' => 'zma', 'Zm00001eb063350' => 'zma', 'Zm00001eb328560' => 'zma', 'Zm00001eb342820' => 'zma', 'Zm00001eb362210' => 'zma', 'Zm00001eb397730' => 'zma', 'Zm00001eb399750' => 'zma' ), 'gf_id' => 'HOM05D000959', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000959' ), 'data_identifier' => 'HOM05D000959', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000959', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '622', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p07100' => 'bna', 'A03p11720' => 'bna', 'A05p08300' => 'bna', 'A05p13380' => 'bna', 'A09p54130' => 'bna', 'A10p16690' => 'bna', 'A10p16700' => 'bna', 'A10p33390' => 'bna', 'Aa31LG10G16020' => 'aar', 'Aa31LG1G11810' => 'aar', 'Aa31LG1G11830' => 'aar', 'Aa31LG1G22510' => 'aar', 'Aa31LG5G4890' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5793' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2310' => 'aag', 'Actinidia08499' => 'ach', 'Actinidia11262' => 'ach', 'Actinidia23926' => 'ach', 'Actinidia34420' => 'ach', 'Actinidia36970' => 'ach', 'Ah.02g111220' => 'amhyb', 'Ah.15g097750' => 'amhyb', 'AL4G27500' => 'aly', 'AL6G11470' => 'aly', 'AL8G35950' => 'aly', 'AL8G35960' => 'aly', 'AL8G35970' => 'aly', 'Aqoxy1G00912' => 'aox', 'Aqoxy2G02253' => 'aox', 'Aqoxy2G02411' => 'aox', 'Aqoxy5G00485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BZ66YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K8ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM4FUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6BF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HFV7XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25JBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0YNNV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MAKK6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P70IT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP2Z6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V61LZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YWP64R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3S9AI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7PGHH' => 'arhy', 'AT2G32150' => 'ath', 'AT3G62040' => 'ath', 'AT5G02230' => 'ath', 'AT5G59480' => 'ath', 'AT5G59490' => 'ath', 'ATR0332G060' => 'atr', 'ATR0559G190' => 'atr', 'ATR0693G294' => 'atr', 'Atru.chr3.3975' => 'acertr', 'Atru.chr3.3976' => 'acertr', 'Atru.chr3.3977' => 'acertr', 'Atru.chr4.2498' => 'acertr', 'Atru.chr5.838' => 'acertr', 'Atru.chr8.1990' => 'acertr', 'Atru.chr8.1991' => 'acertr', 'Atru.chr8.1992' => 'acertr', 'AUR62001759' => 'cqu', 'AUR62009545' => 'cqu', 'AUR62010474' => 'cqu', 'AUR62025820' => 'cqu', 'AUR62030422' => 'cqu', 'AUR62033605' => 'cqu', 'AUR62038615' => 'cqu', 'AUR62041347' => 'cqu', 'BcaB01g04574' => 'bca', 'BcaB02g09263' => 'bca', 'BcaB02g10453' => 'bca', 'BcaB05g22513' => 'bca', 'BcaB08g36253' => 'bca', 'BcaB08g36254' => 'bca', 'BcaC01g06519' => 'bca', 'BcaC02g11889' => 'bca', 'BcaC03g14010' => 'bca', 'BcaC03g18439' => 'bca', 'BcaC04g19765' => 'bca', 'BcaC09g48432' => 'bca', 'BcaNung07302' => 'bca', 'BolC2t06040H' => 'bol', 'BolC2t07346H' => 'bol', 'BolC3t13817H' => 'bol', 'BolC4t22625H' => 'bol', 'BolC4t23297H' => 'bol', 'BolC8t51278H' => 'bol', 'BolC9t58050H' => 'bol', 'BolC9t58051H' => 'bol', 'BolC9t60163H' => 'bol', 'BraA02t04712Z' => 'bra', 'BraA02t05791Z' => 'bra', 'BraA03t10483Z' => 'bra', 'BraA05t19795Z' => 'bra', 'BraA05t20276Z' => 'bra', 'BraA09t40827Z' => 'bra', 'BraA10t43750Z' => 'bra', 'BraA10t43751Z' => 'bra', 'BraA10t45370Z' => 'bra', 'C02p00400' => 'bna', 'C02p12460' => 'bna', 'C03p13680' => 'bna', 'C04p10270' => 'bna', 'C04p17500' => 'bna', 'C08p37010' => 'bna', 'C09p51880' => 'bna', 'C09p51890' => 'bna', 'C09p74300' => 'bna', 'CAN.G179.26' => 'can', 'CAN.G3384.1' => 'can', 'CAN.G394.68' => 'can', 'CAN.G907.13' => 'can', 'CANSAT11G0012' => 'cansat', 'CANSAT25G1586' => 'cansat', 'CANSAT35G0735' => 'cansat', 'CANSAT54G0556' => 'cansat', 'CANSAT64G0356' => 'cansat', 'CANSAT78G2042' => 'cansat', 'CARHR125920' => 'chi', 'CARHR131910' => 'chi', 'CARHR172390' => 'chi', 'CARHR211140' => 'chi', 'CARHR285850' => 'chi', 'CARHR285860' => 'chi', 'Carub.0004s1347' => 'cru', 'Carub.0004s1960' => 'cru', 'Carub.0005s2880' => 'cru', 'Carub.0006s0107' => 'cru', 'Carub.0008s2015' => 'cru', 'Carub.0008s2016' => 'cru', 'Carub.0008s2017' => 'cru', 'Ca_01315_v3' => 'car', 'Ca_05063_v3' => 'car', 'Ca_10231_v3' => 'car', 'Ca_10913_v3' => 'car', 'Ca_19156_v3' => 'car', 'Ca_23644_v3' => 'car', 'Ca_26735_v3' => 'car', 'Cc01_g13130' => 'ccan', 'Cc02_g21690' => 'ccan', 'Cc03_g03600' => 'ccan', 'Cc06_g02510' => 'ccan', 'CDE02G1265' => 'cde', 'CDE05G0415' => 'cde', 'CDE08G1082' => 'cde', 'Cfa005780' => 'cfa', 'Cfa011522' => 'cfa', 'Cfa011523' => 'cfa', 'Cfa015627' => 'cfa', 'Cfa017359' => 'cfa', 'Ciclev10005687m.g' => 'ccl', 'Ciclev10012173m.g' => 'ccl', 'Ciclev10021621m.g' => 'ccl', 'Ciclev10028968m.g' => 'ccl', 'Ciclev10029907m.g' => 'ccl', 'CiPaw.01G164800' => 'cil', 'CiPaw.07G083700' => 'cil', 'CiPaw.07G127000' => 'cil', 'CiPaw.07G136900' => 'cil', 'CiPaw.08G081700' => 'cil', 'CiPaw.09G194600' => 'cil', 'CiPaw.10G146500' => 'cil', 'CiPaw.13G091500' => 'cil', 'CiPaw.13G091600' => 'cil', 'ClCG00G003390' => 'cla', 'ClCG01G007220' => 'cla', 'ClCG03G001370' => 'cla', 'ClCG04G008100' => 'cla', 'ClCG06G006110' => 'cla', 'ClCG06G006130' => 'cla', 'ClCG10G021210' => 'cla', 'COL.COLO4_07648' => 'col', 'COL.COLO4_07650' => 'col', 'COL.COLO4_07651' => 'col', 'COL.COLO4_14780' => 'col', 'COL.COLO4_18546' => 'col', 'COL.COLO4_18547' => 'col', 'COL.COLO4_23103' => 'col', 'COL.COLO4_30419' => 'col', 'COL.COLO4_34232' => 'col', 'Cpa.g.sc169.20' => 'cpa', 'Cpa.g.sc57.45' => 'cpa', 'Cpa.g.sc58.124' => 'cpa', 'Cpa.g.sc58.125' => 'cpa', 'Cpa.g.sc81.118' => 'cpa', 'Cpa.g.sc81.119' => 'cpa', 'Cre12.g524700' => 'cre', 'CsaV3_1G034430' => 'csa', 'CsaV3_1G034440' => 'csa', 'CsaV3_1G034450' => 'csa', 'CsaV3_3G034830' => 'csa', 'CsaV3_4G025090' => 'csa', 'CsaV3_5G018660' => 'csa', 'CsaV3_6G038160' => 'csa', 'CSS0003447' => 'camsi', 'CSS0017840' => 'camsi', 'CSS0019260' => 'camsi', 'CSS0040375' => 'camsi', 'CSS0042533' => 'camsi', 'DCAR_005960' => 'dca', 'DCAR_012104' => 'dca', 'DCAR_012105' => 'dca', 'DCAR_012293' => 'dca', 'DCAR_015632' => 'dca', 'DCAR_024602' => 'dca', 'DCAR_028752' => 'dca', 'Dinv06261' => 'din', 'Dinv13982' => 'din', 'Dinv17029' => 'din', 'Dinv18463' => 'din', 'Dinv33181' => 'din', 'Dinv35585' => 'din', 'Dinv37161' => 'din', 'Dinv42977' => 'din', 'Dinv43122' => 'din', 'Dinv44517' => 'din', 'Duzib093G0256' => 'dzi', 'Duzib106G1254' => 'dzi', 'Duzib128G1789' => 'dzi', 'Duzib133G0633' => 'dzi', 'Duzib138G0510' => 'dzi', 'Duzib150G1084' => 'dzi', 'Duzib168G0488' => 'dzi', 'Duzib168G1523' => 'dzi', 'Duzib170G0133' => 'dzi', 'ECA234G1433' => 'eca', 'ECA236G1432' => 'eca', 'ECA236G2256' => 'eca', 'ECA236G2365' => 'eca', 'ECA236G4830' => 'eca', 'ECA248G1505' => 'eca', 'EL10Ac3g06431' => 'bvu', 'EL10Ac5g12577' => 'bvu', 'EL10Ac6g13533' => 'bvu', 'EL10Ac7g16045' => 'bvu', 'Eucgr.A01281' => 'egr', 'Eucgr.B02326' => 'egr', 'Eucgr.H03532' => 'egr', 'Eucgr.K00553' => 'egr', 'Eucgr.K03116' => 'egr', 'FAN02G3963' => 'fan', 'FAN05G0438' => 'fan', 'FAN09G2434' => 'fan', 'FAN12G3984' => 'fan', 'FAN14G0798' => 'fan', 'FAN17G0652' => 'fan', 'FAN19G1988' => 'fan', 'FAN22G0632' => 'fan', 'FAN23G0387' => 'fan', 'FAN26G1323' => 'fan', 'FAN28G0666' => 'fan', 'FvH4_1g26080' => 'fve', 'FvH4_3g36780' => 'fve', 'FvH4_4g15270' => 'fve', 'FvH4_6g13490' => 'fve', 'Glyma.01G098700' => 'gma', 'Glyma.03G065900' => 'gma', 'Glyma.03G073754' => 'gma', 'Glyma.03G073758' => 'gma', 'Glyma.03G083200' => 'gma', 'Glyma.03G225500' => 'gma', 'Glyma.05G037766' => 'gma', 'Glyma.07G133500' => 'gma', 'Glyma.10G139400' => 'gma', 'Glyma.10G248900' => 'gma', 'Glyma.11G137800' => 'gma', 'Glyma.12G061300' => 'gma', 'Glyma.13G337900' => 'gma', 'Glyma.15G036600' => 'gma', 'Glyma.18G182800' => 'gma', 'Glyma.19G222500' => 'gma', 'Glyma.20G144800' => 'gma', 'Gohir.A01G222000' => 'ghi', 'Gohir.A03G044000' => 'ghi', 'Gohir.A03G044100' => 'ghi', 'Gohir.A04G083100' => 'ghi', 'Gohir.A07G127200' => 'ghi', 'Gohir.A07G132400' => 'ghi', 'Gohir.A08G000700' => 'ghi', 'Gohir.A11G327300' => 'ghi', 'Gohir.D01G211500' => 'ghi', 'Gohir.D03G123400' => 'ghi', 'Gohir.D03G123500' => 'ghi', 'Gohir.D04G121800' => 'ghi', 'Gohir.D07G131500' => 'ghi', 'Gohir.D07G136600' => 'ghi', 'Gohir.D08G011600' => 'ghi', 'Gohir.D11G346200' => 'ghi', 'Gorai.001G142800' => 'gra', 'Gorai.001G148700' => 'gra', 'Gorai.002G257300' => 'gra', 'Gorai.003G130000' => 'gra', 'Gorai.003G130100' => 'gra', 'Gorai.004G005300' => 'gra', 'Gorai.007G376500' => 'gra', 'Gorai.012G104700' => 'gra', 'GSVIVG01017946001' => 'vvi', 'GSVIVG01024928001' => 'vvi', 'GSVIVG01028227001' => 'vvi', 'GSVIVG01034151001' => 'vvi', 'HanXRQChr05g0135031' => 'han', 'HanXRQChr05g0135041' => 'han', 'HanXRQChr05g0140021' => 'han', 'HanXRQChr06g0178981' => 'han', 'HanXRQChr07g0188251' => 'han', 'HanXRQChr08g0235311' => 'han', 'HanXRQChr09g0271011' => 'han', 'HanXRQChr10g0293321' => 'han', 'HanXRQChr13g0388171' => 'han', 'Haze_00916' => 'cav', 'Haze_05063' => 'cav', 'Haze_20814' => 'cav', 'Haze_24128' => 'cav', 'Hma1.2p1_0745F.1_g212010' => 'hma', 'Hma1.2p1_0757F.1_g213260' => 'hma', 'Hma1.2p1_0936F.1_g238840' => 'hma', 'Hma1.2p1_1735F.1_g299890' => 'hma', 'Hma1.2p1_1861F.1_g305685' => 'hma', 'HPP92_003397' => 'vpl', 'HPP92_012597' => 'vpl', 'HPP92_015520' => 'vpl', 'HPP92_015539' => 'vpl', 'HPP92_020373' => 'vpl', 'Hund04938' => 'sun', 'Hund10677' => 'sun', 'Hund11033' => 'sun', 'Hund12155' => 'sun', 'Lalb_Chr01g0022551' => 'lal', 'Lalb_Chr03g0042341' => 'lal', 'Lalb_Chr07g0192931' => 'lal', 'Lalb_Chr12g0209551' => 'lal', 'Lalb_Chr19g0125251' => 'lal', 'Lalb_Chr19g0137891' => 'lal', 'Lalb_Chr21g0304641' => 'lal', 'Lalb_Chr21g0309881' => 'lal', 'Lj1A5T12' => 'lonja', 'Lj1C148G10' => 'lonja', 'Lj2A93T83' => 'lonja', 'Lj3A738G68' => 'lonja', 'Lj3C966T1' => 'lonja', 'Lj3g0018958' => 'lja', 'Lj3g0021831' => 'lja', 'Lj3g0025443' => 'lja', 'Lj4g0026809' => 'lja', 'Lj5g0012558' => 'lja', 'Lj5g0021586' => 'lja', 'Lsat_1_v5_gn_5_156840' => 'lsa', 'Lsat_1_v5_gn_8_73460' => 'lsa', 'Lsat_1_v5_gn_8_73481' => 'lsa', 'Lsat_1_v5_gn_9_31601' => 'lsa', 'Lsat_1_v5_gn_9_77320' => 'lsa', 'Manes.01G171300' => 'mes', 'Manes.01G171400' => 'mes', 'Manes.01G236100' => 'mes', 'Manes.02G130500' => 'mes', 'Manes.02G130600' => 'mes', 'Manes.03G180200' => 'mes', 'Manes.05G007000' => 'mes', 'Manes.08G084400' => 'mes', 'Manes.09G092600' => 'mes', 'Manes.15G027900' => 'mes', 'MBI04_g40948_MAGBIO' => 'mbi', 'MBI14_g12123_MAGBIO' => 'mbi', 'MBI18_g28915_MAGBIO' => 'mbi', 'MCO09G053' => 'mco', 'MCO11G782' => 'mco', 'MCO15G215' => 'mco', 'MD03G1088500' => 'mdo', 'MD03G1088600' => 'mdo', 'MD04G1130800' => 'mdo', 'MD09G1291700' => 'mdo', 'MD11G1097500' => 'mdo', 'MD11G1097600' => 'mdo', 'MD12G1143900' => 'mdo', 'MD13G1191400' => 'mdo', 'MD16G1191500' => 'mdo', 'Medtr1g085570' => 'mtr', 'Medtr1g104610' => 'mtr', 'Medtr2g097520' => 'mtr', 'Medtr4g021800' => 'mtr', 'Medtr4g021825' => 'mtr', 'Medtr4g064270' => 'mtr', 'Medtr4g064380' => 'mtr', 'Medtr7g062150' => 'mtr', 'MELO3C003138.2' => 'cme', 'MELO3C005187.2' => 'cme', 'MELO3C009252.2' => 'cme', 'MELO3C014481.2' => 'cme', 'MELO3C020616.2' => 'cme', 'MELO3C020617.2' => 'cme', 'MELO3C020618.2' => 'cme', 'Migut.G00328' => 'egut', 'Migut.J00320' => 'egut', 'Migut.L01000' => 'egut', 'Migut.L01953' => 'egut', 'MSTRG.10253' => 'ama', 'MSTRG.19077' => 'ama', 'MSTRG.26780' => 'ama', 'MSTRG.4023' => 'ama', 'MSTRG.5655' => 'ama', 'MSTRG.9992' => 'ama', 'Nitab4.5_0000043g0310' => 'nta', 'Nitab4.5_0000463g0080' => 'nta', 'Nitab4.5_0000705g0170' => 'nta', 'Nitab4.5_0001326g0060' => 'nta', 'Nitab4.5_0001628g0030' => 'nta', 'Nitab4.5_0002103g0110' => 'nta', 'Nitab4.5_0002946g0030' => 'nta', 'Nitab4.5_0004639g0030' => 'nta', 'Nn2g11149' => 'nnu', 'Nn2g13389' => 'nnu', 'Nn4g25326' => 'nnu', 'Nn4g26290' => 'nnu', 'Nn5g29865' => 'nnu', 'Oeu004163.1' => 'oeu', 'Oeu006901.1' => 'oeu', 'Oeu010096.1' => 'oeu', 'Oeu024340.1' => 'oeu', 'Oeu048369.1' => 'oeu', 'Os01g0973000' => 'osa', 'Os03g0273800' => 'osa', 'Os03g0701200' => 'osa', 'Os03g0834050' => 'osa', 'Os07g0634400' => 'osa', 'Peaxi162Scf00092g01414' => 'pax', 'Peaxi162Scf00165g00818' => 'pax', 'Peaxi162Scf00309g00516' => 'pax', 'Peaxi162Scf00774g00218' => 'pax', 'PGR004G1824' => 'pgr', 'PGR004G2606' => 'pgr', 'PGR031G2716' => 'pgr', 'PGR102G2460' => 'pgr', 'PGR142G2599' => 'pgr', 'PGSC0003DMG400000843' => 'stu', 'PGSC0003DMG400008829' => 'stu', 'PGSC0003DMG400030418' => 'stu', 'PGSC0003DMG400031834' => 'stu', 'PGSC0003DMG401028300' => 'stu', 'PGSC0003DMG402028300' => 'stu', 'Phvul.001G219300' => 'pvu', 'Phvul.007G056000' => 'pvu', 'Phvul.007G208000' => 'pvu', 'Phvul.008G119500' => 'pvu', 'Phvul.010G011200' => 'pvu', 'Phvul.010G014800' => 'pvu', 'Phvul.011G062900' => 'pvu', 'Phvul.L007043' => 'pvu', 'Potri.001G242300' => 'ptr', 'Potri.002G185300' => 'ptr', 'Potri.006G086900' => 'ptr', 'Potri.008G151700' => 'ptr', 'Potri.009G033500' => 'ptr', 'Potri.010G089300' => 'ptr', 'Potri.014G110800' => 'ptr', 'Pp3c27_8130' => 'ppa', 'Pp3c6_27410' => 'ppa', 'PRCOL_00001659' => 'pco', 'PRCOL_00001927' => 'pco', 'PRCOL_00003649' => 'pco', 'Prupe.1G011600' => 'ppe', 'Prupe.3G000800' => 'ppe', 'Prupe.3G001100' => 'ppe', 'Prupe.6G072700' => 'ppe', 'Prupe.6G072800' => 'ppe', 'Prupe.6G257300' => 'ppe', 'Prupe.8G033000' => 'ppe', 'Psat0s2633g0080' => 'psa', 'Psat0s3396g0080' => 'psa', 'Psat0s3396g0200' => 'psa', 'Psat3g139080' => 'psa', 'Psat5g285080' => 'psa', 'Psat6g157760' => 'psa', 'Psat6g208440' => 'psa', 'Psat7g215320' => 'psa', 'Psat7g215400' => 'psa', 'Psat7g235600' => 'psa', 'Psat7g235760' => 'psa', 'PSO063G4603' => 'pso', 'PSO210G0182' => 'pso', 'PSO210G0196' => 'pso', 'PSO339G0394' => 'pso', 'PSO339G4127' => 'pso', 'PSO513G0064' => 'pso', 'PSO761G0079' => 'pso', 'QL01p031003' => 'qlo', 'QL01p031078' => 'qlo', 'QL06p003004' => 'qlo', 'QL07p048731' => 'qlo', 'QL09p037427' => 'qlo', 'RcHm_v2.0_Chr3g0466361' => 'rch', 'RcHm_v2.0_Chr3g0485571' => 'rch', 'RcHm_v2.0_Chr4g0416551' => 'rch', 'RcHm_v2.0_Chr5g0065831' => 'rch', 'Rhsim01G0230500' => 'rsi', 'Rhsim05G0194000' => 'rsi', 'Rhsim08G0250400' => 'rsi', 'Sabra02G0131000' => 'sbr', 'Sabra06G0066300' => 'sbr', 'Sabra08G0115500' => 'sbr', 'Sabra09G0023900' => 'sbr', 'Sabra10G0054000' => 'sbr', 'Sabra14G0081500' => 'sbr', 'Sabra16G0147100' => 'sbr', 'SalBow2G2957' => 'sbo', 'SalBow4G3320' => 'sbo', 'SalBow8G1894' => 'sbo', 'Sc07g0007950' => 'sci', 'Sc12g0001360' => 'sci', 'Sc13g0004330' => 'sci', 'Sc20g0005010' => 'sci', 'Sed0000361' => 'sed', 'Sed0001706' => 'sed', 'Sed0002422' => 'sed', 'Sed0004029' => 'sed', 'Sed0004602' => 'sed', 'Sed0004943' => 'sed', 'Sed0008646' => 'sed', 'Sed0023313' => 'sed', 'Sed0024843' => 'sed', 'SEGI_00081' => 'sgi', 'SEGI_00947' => 'sgi', 'SEGI_04046' => 'sgi', 'SEGI_06880' => 'sgi', 'SEGI_09736' => 'sgi', 'SEGI_12741' => 'sgi', 'SEGI_14530' => 'sgi', 'SEGI_20705' => 'sgi', 'SEGI_26088' => 'sgi', 'SEGI_28323' => 'sgi', 'SEGI_33343' => 'sgi', 'SGA_v2.0_scaffold126G33775' => 'sas', 'SGA_v2.0_scaffold2G01337' => 'sas', 'SGA_v2.0_scaffold38G15006' => 'sas', 'SGA_v2.0_scaffold39G15264' => 'sas', 'SGA_v2.0_scaffold453G51880' => 'sas', 'SHI12696' => 'shi', 'SMO367G1096' => 'smo', 'Solyc01g068630.3' => 'sly', 'Solyc05g011880.3' => 'sly', 'Solyc06g076300.3' => 'sly', 'Solyc09g010940.4' => 'sly', 'Solyc09g075890.3' => 'sly', 'Sopen01g030560' => 'spe', 'Sopen05g006630' => 'spe', 'Sopen06g032720' => 'spe', 'Sopen09g005660' => 'spe', 'Sopen09g030690' => 'spe', 'Sp4g14540' => 'spa', 'Sp4g20030' => 'spa', 'Sp5g01320' => 'spa', 'Sp6g21170' => 'spa', 'Sp6g21180' => 'spa', 'Sp6g21190' => 'spa', 'Sp6g40220' => 'spa', 'TAR362G0122' => 'tar', 'TAR362G1338' => 'tar', 'TAR369G0590' => 'tar', 'TAR371G0824' => 'tar', 'TAR622G1429' => 'tar', 'TAR623G0734' => 'tar', 'TAR625G0441' => 'tar', 'TAR629G0976' => 'tar', 'TAR633G1195' => 'tar', 'TAR636G2660' => 'tar', 'THA.LOC104799440' => 'tha', 'THA.LOC104800966' => 'tha', 'THA.LOC104806559' => 'tha', 'THA.LOC104810765' => 'tha', 'THA.LOC104816266' => 'tha', 'THA.LOC104817419' => 'tha', 'THA.LOC104827021' => 'tha', 'Thecc.01G327400' => 'tca', 'Thecc.04G229200' => 'tca', 'Thecc.05G037400' => 'tca', 'Thecc.09G318600' => 'tca', 'Thecc.09G318700' => 'tca', 'Thhalv10006238m.g' => 'esa', 'Thhalv10014321m.g' => 'esa', 'Thhalv10014335m.g' => 'esa', 'Thhalv10015826m.g' => 'esa', 'Thhalv10017107m.g' => 'esa', 'Thhalv10017180m.g' => 'esa', 'Thhalv10029339m.g' => 'esa', 'TPR.G1699' => 'tpr', 'TPR.G23609' => 'tpr', 'TPR.G3081' => 'tpr', 'TPR.G40397' => 'tpr', 'TPR.G5522' => 'tpr', 'TPR.G5618' => 'tpr', 'TPR.G5626' => 'tpr', 'TWI09G1632' => 'twi', 'TWI23G1230' => 'twi', 'TWI53G1064' => 'twi', 'TWI59G0751' => 'twi', 'TWI74G0947' => 'twi', 'TWI77G0337' => 'twi', 'TWI79G1254' => 'twi', 'unitig_0.g2341' => 'ugi', 'unitig_26.g10006' => 'ugi', 'unitig_26.g10008' => 'ugi', 'unitig_26.g9192' => 'ugi', 'vmacro14547' => 'vma', 'vmacro15333' => 'vma', 'vmacro18743' => 'vma', 'vmacro20166' => 'vma', 'VMungo0331G0523' => 'vmu', 'VMungo0331G1202' => 'vmu', 'VMungo0720G1228' => 'vmu', 'VMungo0720G1514' => 'vmu', 'VMungo1080G0169' => 'vmu', 'VMungo1127G1475' => 'vmu', 'VMungo1383G1208' => 'vmu', 'VMungo1383G1698' => 'vmu', 'Zm00001eb012270' => 'zma', 'Zm00001eb054100' => 'zma', 'Zm00001eb063350' => 'zma', 'Zm00001eb328560' => 'zma', 'Zm00001eb342820' => 'zma', 'Zm00001eb362210' => 'zma', 'Zm00001eb397730' => 'zma', 'Zm00001eb399750' => 'zma' ) $gf_id = 'HOM05D000959' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000959' ) $data_identifier = 'HOM05D000959' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 5, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 5, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 10, 'mbi' => (int) 3, 'mco' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 2, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 3, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 11, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399750' $species_info = array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ) $local_species = 'mco' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000959', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '622', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p07100' => 'bna', 'A03p11720' => 'bna', 'A05p08300' => 'bna', 'A05p13380' => 'bna', 'A09p54130' => 'bna', 'A10p16690' => 'bna', 'A10p16700' => 'bna', 'A10p33390' => 'bna', 'Aa31LG10G16020' => 'aar', 'Aa31LG1G11810' => 'aar', 'Aa31LG1G11830' => 'aar', 'Aa31LG1G22510' => 'aar', 'Aa31LG5G4890' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5793' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2310' => 'aag', 'Actinidia08499' => 'ach', 'Actinidia11262' => 'ach', 'Actinidia23926' => 'ach', 'Actinidia34420' => 'ach', 'Actinidia36970' => 'ach', 'Ah.02g111220' => 'amhyb', 'Ah.15g097750' => 'amhyb', 'AL4G27500' => 'aly', 'AL6G11470' => 'aly', 'AL8G35950' => 'aly', 'AL8G35960' => 'aly', 'AL8G35970' => 'aly', 'Aqoxy1G00912' => 'aox', 'Aqoxy2G02253' => 'aox', 'Aqoxy2G02411' => 'aox', 'Aqoxy5G00485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BZ66YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K8ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM4FUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6BF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HFV7XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25JBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0YNNV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MAKK6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P70IT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP2Z6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V61LZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YWP64R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3S9AI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7PGHH' => 'arhy', 'AT2G32150' => 'ath', 'AT3G62040' => 'ath', 'AT5G02230' => 'ath', 'AT5G59480' => 'ath', 'AT5G59490' => 'ath', 'ATR0332G060' => 'atr', 'ATR0559G190' => 'atr', 'ATR0693G294' => 'atr', 'Atru.chr3.3975' => 'acertr', 'Atru.chr3.3976' => 'acertr', 'Atru.chr3.3977' => 'acertr', 'Atru.chr4.2498' => 'acertr', 'Atru.chr5.838' => 'acertr', 'Atru.chr8.1990' => 'acertr', 'Atru.chr8.1991' => 'acertr', 'Atru.chr8.1992' => 'acertr', 'AUR62001759' => 'cqu', 'AUR62009545' => 'cqu', 'AUR62010474' => 'cqu', 'AUR62025820' => 'cqu', 'AUR62030422' => 'cqu', 'AUR62033605' => 'cqu', 'AUR62038615' => 'cqu', 'AUR62041347' => 'cqu', 'BcaB01g04574' => 'bca', 'BcaB02g09263' => 'bca', 'BcaB02g10453' => 'bca', 'BcaB05g22513' => 'bca', 'BcaB08g36253' => 'bca', 'BcaB08g36254' => 'bca', 'BcaC01g06519' => 'bca', 'BcaC02g11889' => 'bca', 'BcaC03g14010' => 'bca', 'BcaC03g18439' => 'bca', 'BcaC04g19765' => 'bca', 'BcaC09g48432' => 'bca', 'BcaNung07302' => 'bca', 'BolC2t06040H' => 'bol', 'BolC2t07346H' => 'bol', 'BolC3t13817H' => 'bol', 'BolC4t22625H' => 'bol', 'BolC4t23297H' => 'bol', 'BolC8t51278H' => 'bol', 'BolC9t58050H' => 'bol', 'BolC9t58051H' => 'bol', 'BolC9t60163H' => 'bol', 'BraA02t04712Z' => 'bra', 'BraA02t05791Z' => 'bra', 'BraA03t10483Z' => 'bra', 'BraA05t19795Z' => 'bra', 'BraA05t20276Z' => 'bra', 'BraA09t40827Z' => 'bra', 'BraA10t43750Z' => 'bra', 'BraA10t43751Z' => 'bra', 'BraA10t45370Z' => 'bra', 'C02p00400' => 'bna', 'C02p12460' => 'bna', 'C03p13680' => 'bna', 'C04p10270' => 'bna', 'C04p17500' => 'bna', 'C08p37010' => 'bna', 'C09p51880' => 'bna', 'C09p51890' => 'bna', 'C09p74300' => 'bna', 'CAN.G179.26' => 'can', 'CAN.G3384.1' => 'can', 'CAN.G394.68' => 'can', 'CAN.G907.13' => 'can', 'CANSAT11G0012' => 'cansat', 'CANSAT25G1586' => 'cansat', 'CANSAT35G0735' => 'cansat', 'CANSAT54G0556' => 'cansat', 'CANSAT64G0356' => 'cansat', 'CANSAT78G2042' => 'cansat', 'CARHR125920' => 'chi', 'CARHR131910' => 'chi', 'CARHR172390' => 'chi', 'CARHR211140' => 'chi', 'CARHR285850' => 'chi', 'CARHR285860' => 'chi', 'Carub.0004s1347' => 'cru', 'Carub.0004s1960' => 'cru', 'Carub.0005s2880' => 'cru', 'Carub.0006s0107' => 'cru', 'Carub.0008s2015' => 'cru', 'Carub.0008s2016' => 'cru', 'Carub.0008s2017' => 'cru', 'Ca_01315_v3' => 'car', 'Ca_05063_v3' => 'car', 'Ca_10231_v3' => 'car', 'Ca_10913_v3' => 'car', 'Ca_19156_v3' => 'car', 'Ca_23644_v3' => 'car', 'Ca_26735_v3' => 'car', 'Cc01_g13130' => 'ccan', 'Cc02_g21690' => 'ccan', 'Cc03_g03600' => 'ccan', 'Cc06_g02510' => 'ccan', 'CDE02G1265' => 'cde', 'CDE05G0415' => 'cde', 'CDE08G1082' => 'cde', 'Cfa005780' => 'cfa', 'Cfa011522' => 'cfa', 'Cfa011523' => 'cfa', 'Cfa015627' => 'cfa', 'Cfa017359' => 'cfa', 'Ciclev10005687m.g' => 'ccl', 'Ciclev10012173m.g' => 'ccl', 'Ciclev10021621m.g' => 'ccl', 'Ciclev10028968m.g' => 'ccl', 'Ciclev10029907m.g' => 'ccl', 'CiPaw.01G164800' => 'cil', 'CiPaw.07G083700' => 'cil', 'CiPaw.07G127000' => 'cil', 'CiPaw.07G136900' => 'cil', 'CiPaw.08G081700' => 'cil', 'CiPaw.09G194600' => 'cil', 'CiPaw.10G146500' => 'cil', 'CiPaw.13G091500' => 'cil', 'CiPaw.13G091600' => 'cil', 'ClCG00G003390' => 'cla', 'ClCG01G007220' => 'cla', 'ClCG03G001370' => 'cla', 'ClCG04G008100' => 'cla', 'ClCG06G006110' => 'cla', 'ClCG06G006130' => 'cla', 'ClCG10G021210' => 'cla', 'COL.COLO4_07648' => 'col', 'COL.COLO4_07650' => 'col', 'COL.COLO4_07651' => 'col', 'COL.COLO4_14780' => 'col', 'COL.COLO4_18546' => 'col', 'COL.COLO4_18547' => 'col', 'COL.COLO4_23103' => 'col', 'COL.COLO4_30419' => 'col', 'COL.COLO4_34232' => 'col', 'Cpa.g.sc169.20' => 'cpa', 'Cpa.g.sc57.45' => 'cpa', 'Cpa.g.sc58.124' => 'cpa', 'Cpa.g.sc58.125' => 'cpa', 'Cpa.g.sc81.118' => 'cpa', 'Cpa.g.sc81.119' => 'cpa', 'Cre12.g524700' => 'cre', 'CsaV3_1G034430' => 'csa', 'CsaV3_1G034440' => 'csa', 'CsaV3_1G034450' => 'csa', 'CsaV3_3G034830' => 'csa', 'CsaV3_4G025090' => 'csa', 'CsaV3_5G018660' => 'csa', 'CsaV3_6G038160' => 'csa', 'CSS0003447' => 'camsi', 'CSS0017840' => 'camsi', 'CSS0019260' => 'camsi', 'CSS0040375' => 'camsi', 'CSS0042533' => 'camsi', 'DCAR_005960' => 'dca', 'DCAR_012104' => 'dca', 'DCAR_012105' => 'dca', 'DCAR_012293' => 'dca', 'DCAR_015632' => 'dca', 'DCAR_024602' => 'dca', 'DCAR_028752' => 'dca', 'Dinv06261' => 'din', 'Dinv13982' => 'din', 'Dinv17029' => 'din', 'Dinv18463' => 'din', 'Dinv33181' => 'din', 'Dinv35585' => 'din', 'Dinv37161' => 'din', 'Dinv42977' => 'din', 'Dinv43122' => 'din', 'Dinv44517' => 'din', 'Duzib093G0256' => 'dzi', 'Duzib106G1254' => 'dzi', 'Duzib128G1789' => 'dzi', 'Duzib133G0633' => 'dzi', 'Duzib138G0510' => 'dzi', 'Duzib150G1084' => 'dzi', 'Duzib168G0488' => 'dzi', 'Duzib168G1523' => 'dzi', 'Duzib170G0133' => 'dzi', 'ECA234G1433' => 'eca', 'ECA236G1432' => 'eca', 'ECA236G2256' => 'eca', 'ECA236G2365' => 'eca', 'ECA236G4830' => 'eca', 'ECA248G1505' => 'eca', 'EL10Ac3g06431' => 'bvu', 'EL10Ac5g12577' => 'bvu', 'EL10Ac6g13533' => 'bvu', 'EL10Ac7g16045' => 'bvu', 'Eucgr.A01281' => 'egr', 'Eucgr.B02326' => 'egr', 'Eucgr.H03532' => 'egr', 'Eucgr.K00553' => 'egr', 'Eucgr.K03116' => 'egr', 'FAN02G3963' => 'fan', 'FAN05G0438' => 'fan', 'FAN09G2434' => 'fan', 'FAN12G3984' => 'fan', 'FAN14G0798' => 'fan', 'FAN17G0652' => 'fan', 'FAN19G1988' => 'fan', 'FAN22G0632' => 'fan', 'FAN23G0387' => 'fan', 'FAN26G1323' => 'fan', 'FAN28G0666' => 'fan', 'FvH4_1g26080' => 'fve', 'FvH4_3g36780' => 'fve', 'FvH4_4g15270' => 'fve', 'FvH4_6g13490' => 'fve', 'Glyma.01G098700' => 'gma', 'Glyma.03G065900' => 'gma', 'Glyma.03G073754' => 'gma', 'Glyma.03G073758' => 'gma', 'Glyma.03G083200' => 'gma', 'Glyma.03G225500' => 'gma', 'Glyma.05G037766' => 'gma', 'Glyma.07G133500' => 'gma', 'Glyma.10G139400' => 'gma', 'Glyma.10G248900' => 'gma', 'Glyma.11G137800' => 'gma', 'Glyma.12G061300' => 'gma', 'Glyma.13G337900' => 'gma', 'Glyma.15G036600' => 'gma', 'Glyma.18G182800' => 'gma', 'Glyma.19G222500' => 'gma', 'Glyma.20G144800' => 'gma', 'Gohir.A01G222000' => 'ghi', 'Gohir.A03G044000' => 'ghi', 'Gohir.A03G044100' => 'ghi', 'Gohir.A04G083100' => 'ghi', 'Gohir.A07G127200' => 'ghi', 'Gohir.A07G132400' => 'ghi', 'Gohir.A08G000700' => 'ghi', 'Gohir.A11G327300' => 'ghi', 'Gohir.D01G211500' => 'ghi', 'Gohir.D03G123400' => 'ghi', 'Gohir.D03G123500' => 'ghi', 'Gohir.D04G121800' => 'ghi', 'Gohir.D07G131500' => 'ghi', 'Gohir.D07G136600' => 'ghi', 'Gohir.D08G011600' => 'ghi', 'Gohir.D11G346200' => 'ghi', 'Gorai.001G142800' => 'gra', 'Gorai.001G148700' => 'gra', 'Gorai.002G257300' => 'gra', 'Gorai.003G130000' => 'gra', 'Gorai.003G130100' => 'gra', 'Gorai.004G005300' => 'gra', 'Gorai.007G376500' => 'gra', 'Gorai.012G104700' => 'gra', 'GSVIVG01017946001' => 'vvi', 'GSVIVG01024928001' => 'vvi', 'GSVIVG01028227001' => 'vvi', 'GSVIVG01034151001' => 'vvi', 'HanXRQChr05g0135031' => 'han', 'HanXRQChr05g0135041' => 'han', 'HanXRQChr05g0140021' => 'han', 'HanXRQChr06g0178981' => 'han', 'HanXRQChr07g0188251' => 'han', 'HanXRQChr08g0235311' => 'han', 'HanXRQChr09g0271011' => 'han', 'HanXRQChr10g0293321' => 'han', 'HanXRQChr13g0388171' => 'han', 'Haze_00916' => 'cav', 'Haze_05063' => 'cav', 'Haze_20814' => 'cav', 'Haze_24128' => 'cav', 'Hma1.2p1_0745F.1_g212010' => 'hma', 'Hma1.2p1_0757F.1_g213260' => 'hma', 'Hma1.2p1_0936F.1_g238840' => 'hma', 'Hma1.2p1_1735F.1_g299890' => 'hma', 'Hma1.2p1_1861F.1_g305685' => 'hma', 'HPP92_003397' => 'vpl', 'HPP92_012597' => 'vpl', 'HPP92_015520' => 'vpl', 'HPP92_015539' => 'vpl', 'HPP92_020373' => 'vpl', 'Hund04938' => 'sun', 'Hund10677' => 'sun', 'Hund11033' => 'sun', 'Hund12155' => 'sun', 'Lalb_Chr01g0022551' => 'lal', 'Lalb_Chr03g0042341' => 'lal', 'Lalb_Chr07g0192931' => 'lal', 'Lalb_Chr12g0209551' => 'lal', 'Lalb_Chr19g0125251' => 'lal', 'Lalb_Chr19g0137891' => 'lal', 'Lalb_Chr21g0304641' => 'lal', 'Lalb_Chr21g0309881' => 'lal', 'Lj1A5T12' => 'lonja', 'Lj1C148G10' => 'lonja', 'Lj2A93T83' => 'lonja', 'Lj3A738G68' => 'lonja', 'Lj3C966T1' => 'lonja', 'Lj3g0018958' => 'lja', 'Lj3g0021831' => 'lja', 'Lj3g0025443' => 'lja', 'Lj4g0026809' => 'lja', 'Lj5g0012558' => 'lja', 'Lj5g0021586' => 'lja', 'Lsat_1_v5_gn_5_156840' => 'lsa', 'Lsat_1_v5_gn_8_73460' => 'lsa', 'Lsat_1_v5_gn_8_73481' => 'lsa', 'Lsat_1_v5_gn_9_31601' => 'lsa', 'Lsat_1_v5_gn_9_77320' => 'lsa', 'Manes.01G171300' => 'mes', 'Manes.01G171400' => 'mes', 'Manes.01G236100' => 'mes', 'Manes.02G130500' => 'mes', 'Manes.02G130600' => 'mes', 'Manes.03G180200' => 'mes', 'Manes.05G007000' => 'mes', 'Manes.08G084400' => 'mes', 'Manes.09G092600' => 'mes', 'Manes.15G027900' => 'mes', 'MBI04_g40948_MAGBIO' => 'mbi', 'MBI14_g12123_MAGBIO' => 'mbi', 'MBI18_g28915_MAGBIO' => 'mbi', 'MCO09G053' => 'mco', 'MCO11G782' => 'mco', 'MCO15G215' => 'mco', 'MD03G1088500' => 'mdo', 'MD03G1088600' => 'mdo', 'MD04G1130800' => 'mdo', 'MD09G1291700' => 'mdo', 'MD11G1097500' => 'mdo', 'MD11G1097600' => 'mdo', 'MD12G1143900' => 'mdo', 'MD13G1191400' => 'mdo', 'MD16G1191500' => 'mdo', 'Medtr1g085570' => 'mtr', 'Medtr1g104610' => 'mtr', 'Medtr2g097520' => 'mtr', 'Medtr4g021800' => 'mtr', 'Medtr4g021825' => 'mtr', 'Medtr4g064270' => 'mtr', 'Medtr4g064380' => 'mtr', 'Medtr7g062150' => 'mtr', 'MELO3C003138.2' => 'cme', 'MELO3C005187.2' => 'cme', 'MELO3C009252.2' => 'cme', 'MELO3C014481.2' => 'cme', 'MELO3C020616.2' => 'cme', 'MELO3C020617.2' => 'cme', 'MELO3C020618.2' => 'cme', 'Migut.G00328' => 'egut', 'Migut.J00320' => 'egut', 'Migut.L01000' => 'egut', 'Migut.L01953' => 'egut', 'MSTRG.10253' => 'ama', 'MSTRG.19077' => 'ama', 'MSTRG.26780' => 'ama', 'MSTRG.4023' => 'ama', 'MSTRG.5655' => 'ama', 'MSTRG.9992' => 'ama', 'Nitab4.5_0000043g0310' => 'nta', 'Nitab4.5_0000463g0080' => 'nta', 'Nitab4.5_0000705g0170' => 'nta', 'Nitab4.5_0001326g0060' => 'nta', 'Nitab4.5_0001628g0030' => 'nta', 'Nitab4.5_0002103g0110' => 'nta', 'Nitab4.5_0002946g0030' => 'nta', 'Nitab4.5_0004639g0030' => 'nta', 'Nn2g11149' => 'nnu', 'Nn2g13389' => 'nnu', 'Nn4g25326' => 'nnu', 'Nn4g26290' => 'nnu', 'Nn5g29865' => 'nnu', 'Oeu004163.1' => 'oeu', 'Oeu006901.1' => 'oeu', 'Oeu010096.1' => 'oeu', 'Oeu024340.1' => 'oeu', 'Oeu048369.1' => 'oeu', 'Os01g0973000' => 'osa', 'Os03g0273800' => 'osa', 'Os03g0701200' => 'osa', 'Os03g0834050' => 'osa', 'Os07g0634400' => 'osa', 'Peaxi162Scf00092g01414' => 'pax', 'Peaxi162Scf00165g00818' => 'pax', 'Peaxi162Scf00309g00516' => 'pax', 'Peaxi162Scf00774g00218' => 'pax', 'PGR004G1824' => 'pgr', 'PGR004G2606' => 'pgr', 'PGR031G2716' => 'pgr', 'PGR102G2460' => 'pgr', 'PGR142G2599' => 'pgr', 'PGSC0003DMG400000843' => 'stu', 'PGSC0003DMG400008829' => 'stu', 'PGSC0003DMG400030418' => 'stu', 'PGSC0003DMG400031834' => 'stu', 'PGSC0003DMG401028300' => 'stu', 'PGSC0003DMG402028300' => 'stu', 'Phvul.001G219300' => 'pvu', 'Phvul.007G056000' => 'pvu', 'Phvul.007G208000' => 'pvu', 'Phvul.008G119500' => 'pvu', 'Phvul.010G011200' => 'pvu', 'Phvul.010G014800' => 'pvu', 'Phvul.011G062900' => 'pvu', 'Phvul.L007043' => 'pvu', 'Potri.001G242300' => 'ptr', 'Potri.002G185300' => 'ptr', 'Potri.006G086900' => 'ptr', 'Potri.008G151700' => 'ptr', 'Potri.009G033500' => 'ptr', 'Potri.010G089300' => 'ptr', 'Potri.014G110800' => 'ptr', 'Pp3c27_8130' => 'ppa', 'Pp3c6_27410' => 'ppa', 'PRCOL_00001659' => 'pco', 'PRCOL_00001927' => 'pco', 'PRCOL_00003649' => 'pco', 'Prupe.1G011600' => 'ppe', 'Prupe.3G000800' => 'ppe', 'Prupe.3G001100' => 'ppe', 'Prupe.6G072700' => 'ppe', 'Prupe.6G072800' => 'ppe', 'Prupe.6G257300' => 'ppe', 'Prupe.8G033000' => 'ppe', 'Psat0s2633g0080' => 'psa', 'Psat0s3396g0080' => 'psa', 'Psat0s3396g0200' => 'psa', 'Psat3g139080' => 'psa', 'Psat5g285080' => 'psa', 'Psat6g157760' => 'psa', 'Psat6g208440' => 'psa', 'Psat7g215320' => 'psa', 'Psat7g215400' => 'psa', 'Psat7g235600' => 'psa', 'Psat7g235760' => 'psa', 'PSO063G4603' => 'pso', 'PSO210G0182' => 'pso', 'PSO210G0196' => 'pso', 'PSO339G0394' => 'pso', 'PSO339G4127' => 'pso', 'PSO513G0064' => 'pso', 'PSO761G0079' => 'pso', 'QL01p031003' => 'qlo', 'QL01p031078' => 'qlo', 'QL06p003004' => 'qlo', 'QL07p048731' => 'qlo', 'QL09p037427' => 'qlo', 'RcHm_v2.0_Chr3g0466361' => 'rch', 'RcHm_v2.0_Chr3g0485571' => 'rch', 'RcHm_v2.0_Chr4g0416551' => 'rch', 'RcHm_v2.0_Chr5g0065831' => 'rch', 'Rhsim01G0230500' => 'rsi', 'Rhsim05G0194000' => 'rsi', 'Rhsim08G0250400' => 'rsi', 'Sabra02G0131000' => 'sbr', 'Sabra06G0066300' => 'sbr', 'Sabra08G0115500' => 'sbr', 'Sabra09G0023900' => 'sbr', 'Sabra10G0054000' => 'sbr', 'Sabra14G0081500' => 'sbr', 'Sabra16G0147100' => 'sbr', 'SalBow2G2957' => 'sbo', 'SalBow4G3320' => 'sbo', 'SalBow8G1894' => 'sbo', 'Sc07g0007950' => 'sci', 'Sc12g0001360' => 'sci', 'Sc13g0004330' => 'sci', 'Sc20g0005010' => 'sci', 'Sed0000361' => 'sed', 'Sed0001706' => 'sed', 'Sed0002422' => 'sed', 'Sed0004029' => 'sed', 'Sed0004602' => 'sed', 'Sed0004943' => 'sed', 'Sed0008646' => 'sed', 'Sed0023313' => 'sed', 'Sed0024843' => 'sed', 'SEGI_00081' => 'sgi', 'SEGI_00947' => 'sgi', 'SEGI_04046' => 'sgi', 'SEGI_06880' => 'sgi', 'SEGI_09736' => 'sgi', 'SEGI_12741' => 'sgi', 'SEGI_14530' => 'sgi', 'SEGI_20705' => 'sgi', 'SEGI_26088' => 'sgi', 'SEGI_28323' => 'sgi', 'SEGI_33343' => 'sgi', 'SGA_v2.0_scaffold126G33775' => 'sas', 'SGA_v2.0_scaffold2G01337' => 'sas', 'SGA_v2.0_scaffold38G15006' => 'sas', 'SGA_v2.0_scaffold39G15264' => 'sas', 'SGA_v2.0_scaffold453G51880' => 'sas', 'SHI12696' => 'shi', 'SMO367G1096' => 'smo', 'Solyc01g068630.3' => 'sly', 'Solyc05g011880.3' => 'sly', 'Solyc06g076300.3' => 'sly', 'Solyc09g010940.4' => 'sly', 'Solyc09g075890.3' => 'sly', 'Sopen01g030560' => 'spe', 'Sopen05g006630' => 'spe', 'Sopen06g032720' => 'spe', 'Sopen09g005660' => 'spe', 'Sopen09g030690' => 'spe', 'Sp4g14540' => 'spa', 'Sp4g20030' => 'spa', 'Sp5g01320' => 'spa', 'Sp6g21170' => 'spa', 'Sp6g21180' => 'spa', 'Sp6g21190' => 'spa', 'Sp6g40220' => 'spa', 'TAR362G0122' => 'tar', 'TAR362G1338' => 'tar', 'TAR369G0590' => 'tar', 'TAR371G0824' => 'tar', 'TAR622G1429' => 'tar', 'TAR623G0734' => 'tar', 'TAR625G0441' => 'tar', 'TAR629G0976' => 'tar', 'TAR633G1195' => 'tar', 'TAR636G2660' => 'tar', 'THA.LOC104799440' => 'tha', 'THA.LOC104800966' => 'tha', 'THA.LOC104806559' => 'tha', 'THA.LOC104810765' => 'tha', 'THA.LOC104816266' => 'tha', 'THA.LOC104817419' => 'tha', 'THA.LOC104827021' => 'tha', 'Thecc.01G327400' => 'tca', 'Thecc.04G229200' => 'tca', 'Thecc.05G037400' => 'tca', 'Thecc.09G318600' => 'tca', 'Thecc.09G318700' => 'tca', 'Thhalv10006238m.g' => 'esa', 'Thhalv10014321m.g' => 'esa', 'Thhalv10014335m.g' => 'esa', 'Thhalv10015826m.g' => 'esa', 'Thhalv10017107m.g' => 'esa', 'Thhalv10017180m.g' => 'esa', 'Thhalv10029339m.g' => 'esa', 'TPR.G1699' => 'tpr', 'TPR.G23609' => 'tpr', 'TPR.G3081' => 'tpr', 'TPR.G40397' => 'tpr', 'TPR.G5522' => 'tpr', 'TPR.G5618' => 'tpr', 'TPR.G5626' => 'tpr', 'TWI09G1632' => 'twi', 'TWI23G1230' => 'twi', 'TWI53G1064' => 'twi', 'TWI59G0751' => 'twi', 'TWI74G0947' => 'twi', 'TWI77G0337' => 'twi', 'TWI79G1254' => 'twi', 'unitig_0.g2341' => 'ugi', 'unitig_26.g10006' => 'ugi', 'unitig_26.g10008' => 'ugi', 'unitig_26.g9192' => 'ugi', 'vmacro14547' => 'vma', 'vmacro15333' => 'vma', 'vmacro18743' => 'vma', 'vmacro20166' => 'vma', 'VMungo0331G0523' => 'vmu', 'VMungo0331G1202' => 'vmu', 'VMungo0720G1228' => 'vmu', 'VMungo0720G1514' => 'vmu', 'VMungo1080G0169' => 'vmu', 'VMungo1127G1475' => 'vmu', 'VMungo1383G1208' => 'vmu', 'VMungo1383G1698' => 'vmu', 'Zm00001eb012270' => 'zma', 'Zm00001eb054100' => 'zma', 'Zm00001eb063350' => 'zma', 'Zm00001eb328560' => 'zma', 'Zm00001eb342820' => 'zma', 'Zm00001eb362210' => 'zma', 'Zm00001eb397730' => 'zma', 'Zm00001eb399750' => 'zma' ), 'gf_id' => 'HOM05D000959', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000959' ), 'data_identifier' => 'HOM05D000959', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000959', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '622', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p07100' => 'bna', 'A03p11720' => 'bna', 'A05p08300' => 'bna', 'A05p13380' => 'bna', 'A09p54130' => 'bna', 'A10p16690' => 'bna', 'A10p16700' => 'bna', 'A10p33390' => 'bna', 'Aa31LG10G16020' => 'aar', 'Aa31LG1G11810' => 'aar', 'Aa31LG1G11830' => 'aar', 'Aa31LG1G22510' => 'aar', 'Aa31LG5G4890' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5793' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2310' => 'aag', 'Actinidia08499' => 'ach', 'Actinidia11262' => 'ach', 'Actinidia23926' => 'ach', 'Actinidia34420' => 'ach', 'Actinidia36970' => 'ach', 'Ah.02g111220' => 'amhyb', 'Ah.15g097750' => 'amhyb', 'AL4G27500' => 'aly', 'AL6G11470' => 'aly', 'AL8G35950' => 'aly', 'AL8G35960' => 'aly', 'AL8G35970' => 'aly', 'Aqoxy1G00912' => 'aox', 'Aqoxy2G02253' => 'aox', 'Aqoxy2G02411' => 'aox', 'Aqoxy5G00485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BZ66YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K8ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM4FUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6BF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HFV7XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25JBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0YNNV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MAKK6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P70IT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP2Z6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V61LZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YWP64R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3S9AI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7PGHH' => 'arhy', 'AT2G32150' => 'ath', 'AT3G62040' => 'ath', 'AT5G02230' => 'ath', 'AT5G59480' => 'ath', 'AT5G59490' => 'ath', 'ATR0332G060' => 'atr', 'ATR0559G190' => 'atr', 'ATR0693G294' => 'atr', 'Atru.chr3.3975' => 'acertr', 'Atru.chr3.3976' => 'acertr', 'Atru.chr3.3977' => 'acertr', 'Atru.chr4.2498' => 'acertr', 'Atru.chr5.838' => 'acertr', 'Atru.chr8.1990' => 'acertr', 'Atru.chr8.1991' => 'acertr', 'Atru.chr8.1992' => 'acertr', 'AUR62001759' => 'cqu', 'AUR62009545' => 'cqu', 'AUR62010474' => 'cqu', 'AUR62025820' => 'cqu', 'AUR62030422' => 'cqu', 'AUR62033605' => 'cqu', 'AUR62038615' => 'cqu', 'AUR62041347' => 'cqu', 'BcaB01g04574' => 'bca', 'BcaB02g09263' => 'bca', 'BcaB02g10453' => 'bca', 'BcaB05g22513' => 'bca', 'BcaB08g36253' => 'bca', 'BcaB08g36254' => 'bca', 'BcaC01g06519' => 'bca', 'BcaC02g11889' => 'bca', 'BcaC03g14010' => 'bca', 'BcaC03g18439' => 'bca', 'BcaC04g19765' => 'bca', 'BcaC09g48432' => 'bca', 'BcaNung07302' => 'bca', 'BolC2t06040H' => 'bol', 'BolC2t07346H' => 'bol', 'BolC3t13817H' => 'bol', 'BolC4t22625H' => 'bol', 'BolC4t23297H' => 'bol', 'BolC8t51278H' => 'bol', 'BolC9t58050H' => 'bol', 'BolC9t58051H' => 'bol', 'BolC9t60163H' => 'bol', 'BraA02t04712Z' => 'bra', 'BraA02t05791Z' => 'bra', 'BraA03t10483Z' => 'bra', 'BraA05t19795Z' => 'bra', 'BraA05t20276Z' => 'bra', 'BraA09t40827Z' => 'bra', 'BraA10t43750Z' => 'bra', 'BraA10t43751Z' => 'bra', 'BraA10t45370Z' => 'bra', 'C02p00400' => 'bna', 'C02p12460' => 'bna', 'C03p13680' => 'bna', 'C04p10270' => 'bna', 'C04p17500' => 'bna', 'C08p37010' => 'bna', 'C09p51880' => 'bna', 'C09p51890' => 'bna', 'C09p74300' => 'bna', 'CAN.G179.26' => 'can', 'CAN.G3384.1' => 'can', 'CAN.G394.68' => 'can', 'CAN.G907.13' => 'can', 'CANSAT11G0012' => 'cansat', 'CANSAT25G1586' => 'cansat', 'CANSAT35G0735' => 'cansat', 'CANSAT54G0556' => 'cansat', 'CANSAT64G0356' => 'cansat', 'CANSAT78G2042' => 'cansat', 'CARHR125920' => 'chi', 'CARHR131910' => 'chi', 'CARHR172390' => 'chi', 'CARHR211140' => 'chi', 'CARHR285850' => 'chi', 'CARHR285860' => 'chi', 'Carub.0004s1347' => 'cru', 'Carub.0004s1960' => 'cru', 'Carub.0005s2880' => 'cru', 'Carub.0006s0107' => 'cru', 'Carub.0008s2015' => 'cru', 'Carub.0008s2016' => 'cru', 'Carub.0008s2017' => 'cru', 'Ca_01315_v3' => 'car', 'Ca_05063_v3' => 'car', 'Ca_10231_v3' => 'car', 'Ca_10913_v3' => 'car', 'Ca_19156_v3' => 'car', 'Ca_23644_v3' => 'car', 'Ca_26735_v3' => 'car', 'Cc01_g13130' => 'ccan', 'Cc02_g21690' => 'ccan', 'Cc03_g03600' => 'ccan', 'Cc06_g02510' => 'ccan', 'CDE02G1265' => 'cde', 'CDE05G0415' => 'cde', 'CDE08G1082' => 'cde', 'Cfa005780' => 'cfa', 'Cfa011522' => 'cfa', 'Cfa011523' => 'cfa', 'Cfa015627' => 'cfa', 'Cfa017359' => 'cfa', 'Ciclev10005687m.g' => 'ccl', 'Ciclev10012173m.g' => 'ccl', 'Ciclev10021621m.g' => 'ccl', 'Ciclev10028968m.g' => 'ccl', 'Ciclev10029907m.g' => 'ccl', 'CiPaw.01G164800' => 'cil', 'CiPaw.07G083700' => 'cil', 'CiPaw.07G127000' => 'cil', 'CiPaw.07G136900' => 'cil', 'CiPaw.08G081700' => 'cil', 'CiPaw.09G194600' => 'cil', 'CiPaw.10G146500' => 'cil', 'CiPaw.13G091500' => 'cil', 'CiPaw.13G091600' => 'cil', 'ClCG00G003390' => 'cla', 'ClCG01G007220' => 'cla', 'ClCG03G001370' => 'cla', 'ClCG04G008100' => 'cla', 'ClCG06G006110' => 'cla', 'ClCG06G006130' => 'cla', 'ClCG10G021210' => 'cla', 'COL.COLO4_07648' => 'col', 'COL.COLO4_07650' => 'col', 'COL.COLO4_07651' => 'col', 'COL.COLO4_14780' => 'col', 'COL.COLO4_18546' => 'col', 'COL.COLO4_18547' => 'col', 'COL.COLO4_23103' => 'col', 'COL.COLO4_30419' => 'col', 'COL.COLO4_34232' => 'col', 'Cpa.g.sc169.20' => 'cpa', 'Cpa.g.sc57.45' => 'cpa', 'Cpa.g.sc58.124' => 'cpa', 'Cpa.g.sc58.125' => 'cpa', 'Cpa.g.sc81.118' => 'cpa', 'Cpa.g.sc81.119' => 'cpa', 'Cre12.g524700' => 'cre', 'CsaV3_1G034430' => 'csa', 'CsaV3_1G034440' => 'csa', 'CsaV3_1G034450' => 'csa', 'CsaV3_3G034830' => 'csa', 'CsaV3_4G025090' => 'csa', 'CsaV3_5G018660' => 'csa', 'CsaV3_6G038160' => 'csa', 'CSS0003447' => 'camsi', 'CSS0017840' => 'camsi', 'CSS0019260' => 'camsi', 'CSS0040375' => 'camsi', 'CSS0042533' => 'camsi', 'DCAR_005960' => 'dca', 'DCAR_012104' => 'dca', 'DCAR_012105' => 'dca', 'DCAR_012293' => 'dca', 'DCAR_015632' => 'dca', 'DCAR_024602' => 'dca', 'DCAR_028752' => 'dca', 'Dinv06261' => 'din', 'Dinv13982' => 'din', 'Dinv17029' => 'din', 'Dinv18463' => 'din', 'Dinv33181' => 'din', 'Dinv35585' => 'din', 'Dinv37161' => 'din', 'Dinv42977' => 'din', 'Dinv43122' => 'din', 'Dinv44517' => 'din', 'Duzib093G0256' => 'dzi', 'Duzib106G1254' => 'dzi', 'Duzib128G1789' => 'dzi', 'Duzib133G0633' => 'dzi', 'Duzib138G0510' => 'dzi', 'Duzib150G1084' => 'dzi', 'Duzib168G0488' => 'dzi', 'Duzib168G1523' => 'dzi', 'Duzib170G0133' => 'dzi', 'ECA234G1433' => 'eca', 'ECA236G1432' => 'eca', 'ECA236G2256' => 'eca', 'ECA236G2365' => 'eca', 'ECA236G4830' => 'eca', 'ECA248G1505' => 'eca', 'EL10Ac3g06431' => 'bvu', 'EL10Ac5g12577' => 'bvu', 'EL10Ac6g13533' => 'bvu', 'EL10Ac7g16045' => 'bvu', 'Eucgr.A01281' => 'egr', 'Eucgr.B02326' => 'egr', 'Eucgr.H03532' => 'egr', 'Eucgr.K00553' => 'egr', 'Eucgr.K03116' => 'egr', 'FAN02G3963' => 'fan', 'FAN05G0438' => 'fan', 'FAN09G2434' => 'fan', 'FAN12G3984' => 'fan', 'FAN14G0798' => 'fan', 'FAN17G0652' => 'fan', 'FAN19G1988' => 'fan', 'FAN22G0632' => 'fan', 'FAN23G0387' => 'fan', 'FAN26G1323' => 'fan', 'FAN28G0666' => 'fan', 'FvH4_1g26080' => 'fve', 'FvH4_3g36780' => 'fve', 'FvH4_4g15270' => 'fve', 'FvH4_6g13490' => 'fve', 'Glyma.01G098700' => 'gma', 'Glyma.03G065900' => 'gma', 'Glyma.03G073754' => 'gma', 'Glyma.03G073758' => 'gma', 'Glyma.03G083200' => 'gma', 'Glyma.03G225500' => 'gma', 'Glyma.05G037766' => 'gma', 'Glyma.07G133500' => 'gma', 'Glyma.10G139400' => 'gma', 'Glyma.10G248900' => 'gma', 'Glyma.11G137800' => 'gma', 'Glyma.12G061300' => 'gma', 'Glyma.13G337900' => 'gma', 'Glyma.15G036600' => 'gma', 'Glyma.18G182800' => 'gma', 'Glyma.19G222500' => 'gma', 'Glyma.20G144800' => 'gma', 'Gohir.A01G222000' => 'ghi', 'Gohir.A03G044000' => 'ghi', 'Gohir.A03G044100' => 'ghi', 'Gohir.A04G083100' => 'ghi', 'Gohir.A07G127200' => 'ghi', 'Gohir.A07G132400' => 'ghi', 'Gohir.A08G000700' => 'ghi', 'Gohir.A11G327300' => 'ghi', 'Gohir.D01G211500' => 'ghi', 'Gohir.D03G123400' => 'ghi', 'Gohir.D03G123500' => 'ghi', 'Gohir.D04G121800' => 'ghi', 'Gohir.D07G131500' => 'ghi', 'Gohir.D07G136600' => 'ghi', 'Gohir.D08G011600' => 'ghi', 'Gohir.D11G346200' => 'ghi', 'Gorai.001G142800' => 'gra', 'Gorai.001G148700' => 'gra', 'Gorai.002G257300' => 'gra', 'Gorai.003G130000' => 'gra', 'Gorai.003G130100' => 'gra', 'Gorai.004G005300' => 'gra', 'Gorai.007G376500' => 'gra', 'Gorai.012G104700' => 'gra', 'GSVIVG01017946001' => 'vvi', 'GSVIVG01024928001' => 'vvi', 'GSVIVG01028227001' => 'vvi', 'GSVIVG01034151001' => 'vvi', 'HanXRQChr05g0135031' => 'han', 'HanXRQChr05g0135041' => 'han', 'HanXRQChr05g0140021' => 'han', 'HanXRQChr06g0178981' => 'han', 'HanXRQChr07g0188251' => 'han', 'HanXRQChr08g0235311' => 'han', 'HanXRQChr09g0271011' => 'han', 'HanXRQChr10g0293321' => 'han', 'HanXRQChr13g0388171' => 'han', 'Haze_00916' => 'cav', 'Haze_05063' => 'cav', 'Haze_20814' => 'cav', 'Haze_24128' => 'cav', 'Hma1.2p1_0745F.1_g212010' => 'hma', 'Hma1.2p1_0757F.1_g213260' => 'hma', 'Hma1.2p1_0936F.1_g238840' => 'hma', 'Hma1.2p1_1735F.1_g299890' => 'hma', 'Hma1.2p1_1861F.1_g305685' => 'hma', 'HPP92_003397' => 'vpl', 'HPP92_012597' => 'vpl', 'HPP92_015520' => 'vpl', 'HPP92_015539' => 'vpl', 'HPP92_020373' => 'vpl', 'Hund04938' => 'sun', 'Hund10677' => 'sun', 'Hund11033' => 'sun', 'Hund12155' => 'sun', 'Lalb_Chr01g0022551' => 'lal', 'Lalb_Chr03g0042341' => 'lal', 'Lalb_Chr07g0192931' => 'lal', 'Lalb_Chr12g0209551' => 'lal', 'Lalb_Chr19g0125251' => 'lal', 'Lalb_Chr19g0137891' => 'lal', 'Lalb_Chr21g0304641' => 'lal', 'Lalb_Chr21g0309881' => 'lal', 'Lj1A5T12' => 'lonja', 'Lj1C148G10' => 'lonja', 'Lj2A93T83' => 'lonja', 'Lj3A738G68' => 'lonja', 'Lj3C966T1' => 'lonja', 'Lj3g0018958' => 'lja', 'Lj3g0021831' => 'lja', 'Lj3g0025443' => 'lja', 'Lj4g0026809' => 'lja', 'Lj5g0012558' => 'lja', 'Lj5g0021586' => 'lja', 'Lsat_1_v5_gn_5_156840' => 'lsa', 'Lsat_1_v5_gn_8_73460' => 'lsa', 'Lsat_1_v5_gn_8_73481' => 'lsa', 'Lsat_1_v5_gn_9_31601' => 'lsa', 'Lsat_1_v5_gn_9_77320' => 'lsa', 'Manes.01G171300' => 'mes', 'Manes.01G171400' => 'mes', 'Manes.01G236100' => 'mes', 'Manes.02G130500' => 'mes', 'Manes.02G130600' => 'mes', 'Manes.03G180200' => 'mes', 'Manes.05G007000' => 'mes', 'Manes.08G084400' => 'mes', 'Manes.09G092600' => 'mes', 'Manes.15G027900' => 'mes', 'MBI04_g40948_MAGBIO' => 'mbi', 'MBI14_g12123_MAGBIO' => 'mbi', 'MBI18_g28915_MAGBIO' => 'mbi', 'MCO09G053' => 'mco', 'MCO11G782' => 'mco', 'MCO15G215' => 'mco', 'MD03G1088500' => 'mdo', 'MD03G1088600' => 'mdo', 'MD04G1130800' => 'mdo', 'MD09G1291700' => 'mdo', 'MD11G1097500' => 'mdo', 'MD11G1097600' => 'mdo', 'MD12G1143900' => 'mdo', 'MD13G1191400' => 'mdo', 'MD16G1191500' => 'mdo', 'Medtr1g085570' => 'mtr', 'Medtr1g104610' => 'mtr', 'Medtr2g097520' => 'mtr', 'Medtr4g021800' => 'mtr', 'Medtr4g021825' => 'mtr', 'Medtr4g064270' => 'mtr', 'Medtr4g064380' => 'mtr', 'Medtr7g062150' => 'mtr', 'MELO3C003138.2' => 'cme', 'MELO3C005187.2' => 'cme', 'MELO3C009252.2' => 'cme', 'MELO3C014481.2' => 'cme', 'MELO3C020616.2' => 'cme', 'MELO3C020617.2' => 'cme', 'MELO3C020618.2' => 'cme', 'Migut.G00328' => 'egut', 'Migut.J00320' => 'egut', 'Migut.L01000' => 'egut', 'Migut.L01953' => 'egut', 'MSTRG.10253' => 'ama', 'MSTRG.19077' => 'ama', 'MSTRG.26780' => 'ama', 'MSTRG.4023' => 'ama', 'MSTRG.5655' => 'ama', 'MSTRG.9992' => 'ama', 'Nitab4.5_0000043g0310' => 'nta', 'Nitab4.5_0000463g0080' => 'nta', 'Nitab4.5_0000705g0170' => 'nta', 'Nitab4.5_0001326g0060' => 'nta', 'Nitab4.5_0001628g0030' => 'nta', 'Nitab4.5_0002103g0110' => 'nta', 'Nitab4.5_0002946g0030' => 'nta', 'Nitab4.5_0004639g0030' => 'nta', 'Nn2g11149' => 'nnu', 'Nn2g13389' => 'nnu', 'Nn4g25326' => 'nnu', 'Nn4g26290' => 'nnu', 'Nn5g29865' => 'nnu', 'Oeu004163.1' => 'oeu', 'Oeu006901.1' => 'oeu', 'Oeu010096.1' => 'oeu', 'Oeu024340.1' => 'oeu', 'Oeu048369.1' => 'oeu', 'Os01g0973000' => 'osa', 'Os03g0273800' => 'osa', 'Os03g0701200' => 'osa', 'Os03g0834050' => 'osa', 'Os07g0634400' => 'osa', 'Peaxi162Scf00092g01414' => 'pax', 'Peaxi162Scf00165g00818' => 'pax', 'Peaxi162Scf00309g00516' => 'pax', 'Peaxi162Scf00774g00218' => 'pax', 'PGR004G1824' => 'pgr', 'PGR004G2606' => 'pgr', 'PGR031G2716' => 'pgr', 'PGR102G2460' => 'pgr', 'PGR142G2599' => 'pgr', 'PGSC0003DMG400000843' => 'stu', 'PGSC0003DMG400008829' => 'stu', 'PGSC0003DMG400030418' => 'stu', 'PGSC0003DMG400031834' => 'stu', 'PGSC0003DMG401028300' => 'stu', 'PGSC0003DMG402028300' => 'stu', 'Phvul.001G219300' => 'pvu', 'Phvul.007G056000' => 'pvu', 'Phvul.007G208000' => 'pvu', 'Phvul.008G119500' => 'pvu', 'Phvul.010G011200' => 'pvu', 'Phvul.010G014800' => 'pvu', 'Phvul.011G062900' => 'pvu', 'Phvul.L007043' => 'pvu', 'Potri.001G242300' => 'ptr', 'Potri.002G185300' => 'ptr', 'Potri.006G086900' => 'ptr', 'Potri.008G151700' => 'ptr', 'Potri.009G033500' => 'ptr', 'Potri.010G089300' => 'ptr', 'Potri.014G110800' => 'ptr', 'Pp3c27_8130' => 'ppa', 'Pp3c6_27410' => 'ppa', 'PRCOL_00001659' => 'pco', 'PRCOL_00001927' => 'pco', 'PRCOL_00003649' => 'pco', 'Prupe.1G011600' => 'ppe', 'Prupe.3G000800' => 'ppe', 'Prupe.3G001100' => 'ppe', 'Prupe.6G072700' => 'ppe', 'Prupe.6G072800' => 'ppe', 'Prupe.6G257300' => 'ppe', 'Prupe.8G033000' => 'ppe', 'Psat0s2633g0080' => 'psa', 'Psat0s3396g0080' => 'psa', 'Psat0s3396g0200' => 'psa', 'Psat3g139080' => 'psa', 'Psat5g285080' => 'psa', 'Psat6g157760' => 'psa', 'Psat6g208440' => 'psa', 'Psat7g215320' => 'psa', 'Psat7g215400' => 'psa', 'Psat7g235600' => 'psa', 'Psat7g235760' => 'psa', 'PSO063G4603' => 'pso', 'PSO210G0182' => 'pso', 'PSO210G0196' => 'pso', 'PSO339G0394' => 'pso', 'PSO339G4127' => 'pso', 'PSO513G0064' => 'pso', 'PSO761G0079' => 'pso', 'QL01p031003' => 'qlo', 'QL01p031078' => 'qlo', 'QL06p003004' => 'qlo', 'QL07p048731' => 'qlo', 'QL09p037427' => 'qlo', 'RcHm_v2.0_Chr3g0466361' => 'rch', 'RcHm_v2.0_Chr3g0485571' => 'rch', 'RcHm_v2.0_Chr4g0416551' => 'rch', 'RcHm_v2.0_Chr5g0065831' => 'rch', 'Rhsim01G0230500' => 'rsi', 'Rhsim05G0194000' => 'rsi', 'Rhsim08G0250400' => 'rsi', 'Sabra02G0131000' => 'sbr', 'Sabra06G0066300' => 'sbr', 'Sabra08G0115500' => 'sbr', 'Sabra09G0023900' => 'sbr', 'Sabra10G0054000' => 'sbr', 'Sabra14G0081500' => 'sbr', 'Sabra16G0147100' => 'sbr', 'SalBow2G2957' => 'sbo', 'SalBow4G3320' => 'sbo', 'SalBow8G1894' => 'sbo', 'Sc07g0007950' => 'sci', 'Sc12g0001360' => 'sci', 'Sc13g0004330' => 'sci', 'Sc20g0005010' => 'sci', 'Sed0000361' => 'sed', 'Sed0001706' => 'sed', 'Sed0002422' => 'sed', 'Sed0004029' => 'sed', 'Sed0004602' => 'sed', 'Sed0004943' => 'sed', 'Sed0008646' => 'sed', 'Sed0023313' => 'sed', 'Sed0024843' => 'sed', 'SEGI_00081' => 'sgi', 'SEGI_00947' => 'sgi', 'SEGI_04046' => 'sgi', 'SEGI_06880' => 'sgi', 'SEGI_09736' => 'sgi', 'SEGI_12741' => 'sgi', 'SEGI_14530' => 'sgi', 'SEGI_20705' => 'sgi', 'SEGI_26088' => 'sgi', 'SEGI_28323' => 'sgi', 'SEGI_33343' => 'sgi', 'SGA_v2.0_scaffold126G33775' => 'sas', 'SGA_v2.0_scaffold2G01337' => 'sas', 'SGA_v2.0_scaffold38G15006' => 'sas', 'SGA_v2.0_scaffold39G15264' => 'sas', 'SGA_v2.0_scaffold453G51880' => 'sas', 'SHI12696' => 'shi', 'SMO367G1096' => 'smo', 'Solyc01g068630.3' => 'sly', 'Solyc05g011880.3' => 'sly', 'Solyc06g076300.3' => 'sly', 'Solyc09g010940.4' => 'sly', 'Solyc09g075890.3' => 'sly', 'Sopen01g030560' => 'spe', 'Sopen05g006630' => 'spe', 'Sopen06g032720' => 'spe', 'Sopen09g005660' => 'spe', 'Sopen09g030690' => 'spe', 'Sp4g14540' => 'spa', 'Sp4g20030' => 'spa', 'Sp5g01320' => 'spa', 'Sp6g21170' => 'spa', 'Sp6g21180' => 'spa', 'Sp6g21190' => 'spa', 'Sp6g40220' => 'spa', 'TAR362G0122' => 'tar', 'TAR362G1338' => 'tar', 'TAR369G0590' => 'tar', 'TAR371G0824' => 'tar', 'TAR622G1429' => 'tar', 'TAR623G0734' => 'tar', 'TAR625G0441' => 'tar', 'TAR629G0976' => 'tar', 'TAR633G1195' => 'tar', 'TAR636G2660' => 'tar', 'THA.LOC104799440' => 'tha', 'THA.LOC104800966' => 'tha', 'THA.LOC104806559' => 'tha', 'THA.LOC104810765' => 'tha', 'THA.LOC104816266' => 'tha', 'THA.LOC104817419' => 'tha', 'THA.LOC104827021' => 'tha', 'Thecc.01G327400' => 'tca', 'Thecc.04G229200' => 'tca', 'Thecc.05G037400' => 'tca', 'Thecc.09G318600' => 'tca', 'Thecc.09G318700' => 'tca', 'Thhalv10006238m.g' => 'esa', 'Thhalv10014321m.g' => 'esa', 'Thhalv10014335m.g' => 'esa', 'Thhalv10015826m.g' => 'esa', 'Thhalv10017107m.g' => 'esa', 'Thhalv10017180m.g' => 'esa', 'Thhalv10029339m.g' => 'esa', 'TPR.G1699' => 'tpr', 'TPR.G23609' => 'tpr', 'TPR.G3081' => 'tpr', 'TPR.G40397' => 'tpr', 'TPR.G5522' => 'tpr', 'TPR.G5618' => 'tpr', 'TPR.G5626' => 'tpr', 'TWI09G1632' => 'twi', 'TWI23G1230' => 'twi', 'TWI53G1064' => 'twi', 'TWI59G0751' => 'twi', 'TWI74G0947' => 'twi', 'TWI77G0337' => 'twi', 'TWI79G1254' => 'twi', 'unitig_0.g2341' => 'ugi', 'unitig_26.g10006' => 'ugi', 'unitig_26.g10008' => 'ugi', 'unitig_26.g9192' => 'ugi', 'vmacro14547' => 'vma', 'vmacro15333' => 'vma', 'vmacro18743' => 'vma', 'vmacro20166' => 'vma', 'VMungo0331G0523' => 'vmu', 'VMungo0331G1202' => 'vmu', 'VMungo0720G1228' => 'vmu', 'VMungo0720G1514' => 'vmu', 'VMungo1080G0169' => 'vmu', 'VMungo1127G1475' => 'vmu', 'VMungo1383G1208' => 'vmu', 'VMungo1383G1698' => 'vmu', 'Zm00001eb012270' => 'zma', 'Zm00001eb054100' => 'zma', 'Zm00001eb063350' => 'zma', 'Zm00001eb328560' => 'zma', 'Zm00001eb342820' => 'zma', 'Zm00001eb362210' => 'zma', 'Zm00001eb397730' => 'zma', 'Zm00001eb399750' => 'zma' ) $gf_id = 'HOM05D000959' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000959' ) $data_identifier = 'HOM05D000959' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 5, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 5, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 10, 'mbi' => (int) 3, 'mco' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 2, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 3, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 11, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399750' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000959', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '622', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p07100' => 'bna', 'A03p11720' => 'bna', 'A05p08300' => 'bna', 'A05p13380' => 'bna', 'A09p54130' => 'bna', 'A10p16690' => 'bna', 'A10p16700' => 'bna', 'A10p33390' => 'bna', 'Aa31LG10G16020' => 'aar', 'Aa31LG1G11810' => 'aar', 'Aa31LG1G11830' => 'aar', 'Aa31LG1G22510' => 'aar', 'Aa31LG5G4890' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5793' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2310' => 'aag', 'Actinidia08499' => 'ach', 'Actinidia11262' => 'ach', 'Actinidia23926' => 'ach', 'Actinidia34420' => 'ach', 'Actinidia36970' => 'ach', 'Ah.02g111220' => 'amhyb', 'Ah.15g097750' => 'amhyb', 'AL4G27500' => 'aly', 'AL6G11470' => 'aly', 'AL8G35950' => 'aly', 'AL8G35960' => 'aly', 'AL8G35970' => 'aly', 'Aqoxy1G00912' => 'aox', 'Aqoxy2G02253' => 'aox', 'Aqoxy2G02411' => 'aox', 'Aqoxy5G00485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BZ66YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K8ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM4FUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6BF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HFV7XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25JBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0YNNV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MAKK6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P70IT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP2Z6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V61LZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YWP64R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3S9AI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7PGHH' => 'arhy', 'AT2G32150' => 'ath', 'AT3G62040' => 'ath', 'AT5G02230' => 'ath', 'AT5G59480' => 'ath', 'AT5G59490' => 'ath', 'ATR0332G060' => 'atr', 'ATR0559G190' => 'atr', 'ATR0693G294' => 'atr', 'Atru.chr3.3975' => 'acertr', 'Atru.chr3.3976' => 'acertr', 'Atru.chr3.3977' => 'acertr', 'Atru.chr4.2498' => 'acertr', 'Atru.chr5.838' => 'acertr', 'Atru.chr8.1990' => 'acertr', 'Atru.chr8.1991' => 'acertr', 'Atru.chr8.1992' => 'acertr', 'AUR62001759' => 'cqu', 'AUR62009545' => 'cqu', 'AUR62010474' => 'cqu', 'AUR62025820' => 'cqu', 'AUR62030422' => 'cqu', 'AUR62033605' => 'cqu', 'AUR62038615' => 'cqu', 'AUR62041347' => 'cqu', 'BcaB01g04574' => 'bca', 'BcaB02g09263' => 'bca', 'BcaB02g10453' => 'bca', 'BcaB05g22513' => 'bca', 'BcaB08g36253' => 'bca', 'BcaB08g36254' => 'bca', 'BcaC01g06519' => 'bca', 'BcaC02g11889' => 'bca', 'BcaC03g14010' => 'bca', 'BcaC03g18439' => 'bca', 'BcaC04g19765' => 'bca', 'BcaC09g48432' => 'bca', 'BcaNung07302' => 'bca', 'BolC2t06040H' => 'bol', 'BolC2t07346H' => 'bol', 'BolC3t13817H' => 'bol', 'BolC4t22625H' => 'bol', 'BolC4t23297H' => 'bol', 'BolC8t51278H' => 'bol', 'BolC9t58050H' => 'bol', 'BolC9t58051H' => 'bol', 'BolC9t60163H' => 'bol', 'BraA02t04712Z' => 'bra', 'BraA02t05791Z' => 'bra', 'BraA03t10483Z' => 'bra', 'BraA05t19795Z' => 'bra', 'BraA05t20276Z' => 'bra', 'BraA09t40827Z' => 'bra', 'BraA10t43750Z' => 'bra', 'BraA10t43751Z' => 'bra', 'BraA10t45370Z' => 'bra', 'C02p00400' => 'bna', 'C02p12460' => 'bna', 'C03p13680' => 'bna', 'C04p10270' => 'bna', 'C04p17500' => 'bna', 'C08p37010' => 'bna', 'C09p51880' => 'bna', 'C09p51890' => 'bna', 'C09p74300' => 'bna', 'CAN.G179.26' => 'can', 'CAN.G3384.1' => 'can', 'CAN.G394.68' => 'can', 'CAN.G907.13' => 'can', 'CANSAT11G0012' => 'cansat', 'CANSAT25G1586' => 'cansat', 'CANSAT35G0735' => 'cansat', 'CANSAT54G0556' => 'cansat', 'CANSAT64G0356' => 'cansat', 'CANSAT78G2042' => 'cansat', 'CARHR125920' => 'chi', 'CARHR131910' => 'chi', 'CARHR172390' => 'chi', 'CARHR211140' => 'chi', 'CARHR285850' => 'chi', 'CARHR285860' => 'chi', 'Carub.0004s1347' => 'cru', 'Carub.0004s1960' => 'cru', 'Carub.0005s2880' => 'cru', 'Carub.0006s0107' => 'cru', 'Carub.0008s2015' => 'cru', 'Carub.0008s2016' => 'cru', 'Carub.0008s2017' => 'cru', 'Ca_01315_v3' => 'car', 'Ca_05063_v3' => 'car', 'Ca_10231_v3' => 'car', 'Ca_10913_v3' => 'car', 'Ca_19156_v3' => 'car', 'Ca_23644_v3' => 'car', 'Ca_26735_v3' => 'car', 'Cc01_g13130' => 'ccan', 'Cc02_g21690' => 'ccan', 'Cc03_g03600' => 'ccan', 'Cc06_g02510' => 'ccan', 'CDE02G1265' => 'cde', 'CDE05G0415' => 'cde', 'CDE08G1082' => 'cde', 'Cfa005780' => 'cfa', 'Cfa011522' => 'cfa', 'Cfa011523' => 'cfa', 'Cfa015627' => 'cfa', 'Cfa017359' => 'cfa', 'Ciclev10005687m.g' => 'ccl', 'Ciclev10012173m.g' => 'ccl', 'Ciclev10021621m.g' => 'ccl', 'Ciclev10028968m.g' => 'ccl', 'Ciclev10029907m.g' => 'ccl', 'CiPaw.01G164800' => 'cil', 'CiPaw.07G083700' => 'cil', 'CiPaw.07G127000' => 'cil', 'CiPaw.07G136900' => 'cil', 'CiPaw.08G081700' => 'cil', 'CiPaw.09G194600' => 'cil', 'CiPaw.10G146500' => 'cil', 'CiPaw.13G091500' => 'cil', 'CiPaw.13G091600' => 'cil', 'ClCG00G003390' => 'cla', 'ClCG01G007220' => 'cla', 'ClCG03G001370' => 'cla', 'ClCG04G008100' => 'cla', 'ClCG06G006110' => 'cla', 'ClCG06G006130' => 'cla', 'ClCG10G021210' => 'cla', 'COL.COLO4_07648' => 'col', 'COL.COLO4_07650' => 'col', 'COL.COLO4_07651' => 'col', 'COL.COLO4_14780' => 'col', 'COL.COLO4_18546' => 'col', 'COL.COLO4_18547' => 'col', 'COL.COLO4_23103' => 'col', 'COL.COLO4_30419' => 'col', 'COL.COLO4_34232' => 'col', 'Cpa.g.sc169.20' => 'cpa', 'Cpa.g.sc57.45' => 'cpa', 'Cpa.g.sc58.124' => 'cpa', 'Cpa.g.sc58.125' => 'cpa', 'Cpa.g.sc81.118' => 'cpa', 'Cpa.g.sc81.119' => 'cpa', 'Cre12.g524700' => 'cre', 'CsaV3_1G034430' => 'csa', 'CsaV3_1G034440' => 'csa', 'CsaV3_1G034450' => 'csa', 'CsaV3_3G034830' => 'csa', 'CsaV3_4G025090' => 'csa', 'CsaV3_5G018660' => 'csa', 'CsaV3_6G038160' => 'csa', 'CSS0003447' => 'camsi', 'CSS0017840' => 'camsi', 'CSS0019260' => 'camsi', 'CSS0040375' => 'camsi', 'CSS0042533' => 'camsi', 'DCAR_005960' => 'dca', 'DCAR_012104' => 'dca', 'DCAR_012105' => 'dca', 'DCAR_012293' => 'dca', 'DCAR_015632' => 'dca', 'DCAR_024602' => 'dca', 'DCAR_028752' => 'dca', 'Dinv06261' => 'din', 'Dinv13982' => 'din', 'Dinv17029' => 'din', 'Dinv18463' => 'din', 'Dinv33181' => 'din', 'Dinv35585' => 'din', 'Dinv37161' => 'din', 'Dinv42977' => 'din', 'Dinv43122' => 'din', 'Dinv44517' => 'din', 'Duzib093G0256' => 'dzi', 'Duzib106G1254' => 'dzi', 'Duzib128G1789' => 'dzi', 'Duzib133G0633' => 'dzi', 'Duzib138G0510' => 'dzi', 'Duzib150G1084' => 'dzi', 'Duzib168G0488' => 'dzi', 'Duzib168G1523' => 'dzi', 'Duzib170G0133' => 'dzi', 'ECA234G1433' => 'eca', 'ECA236G1432' => 'eca', 'ECA236G2256' => 'eca', 'ECA236G2365' => 'eca', 'ECA236G4830' => 'eca', 'ECA248G1505' => 'eca', 'EL10Ac3g06431' => 'bvu', 'EL10Ac5g12577' => 'bvu', 'EL10Ac6g13533' => 'bvu', 'EL10Ac7g16045' => 'bvu', 'Eucgr.A01281' => 'egr', 'Eucgr.B02326' => 'egr', 'Eucgr.H03532' => 'egr', 'Eucgr.K00553' => 'egr', 'Eucgr.K03116' => 'egr', 'FAN02G3963' => 'fan', 'FAN05G0438' => 'fan', 'FAN09G2434' => 'fan', 'FAN12G3984' => 'fan', 'FAN14G0798' => 'fan', 'FAN17G0652' => 'fan', 'FAN19G1988' => 'fan', 'FAN22G0632' => 'fan', 'FAN23G0387' => 'fan', 'FAN26G1323' => 'fan', 'FAN28G0666' => 'fan', 'FvH4_1g26080' => 'fve', 'FvH4_3g36780' => 'fve', 'FvH4_4g15270' => 'fve', 'FvH4_6g13490' => 'fve', 'Glyma.01G098700' => 'gma', 'Glyma.03G065900' => 'gma', 'Glyma.03G073754' => 'gma', 'Glyma.03G073758' => 'gma', 'Glyma.03G083200' => 'gma', 'Glyma.03G225500' => 'gma', 'Glyma.05G037766' => 'gma', 'Glyma.07G133500' => 'gma', 'Glyma.10G139400' => 'gma', 'Glyma.10G248900' => 'gma', 'Glyma.11G137800' => 'gma', 'Glyma.12G061300' => 'gma', 'Glyma.13G337900' => 'gma', 'Glyma.15G036600' => 'gma', 'Glyma.18G182800' => 'gma', 'Glyma.19G222500' => 'gma', 'Glyma.20G144800' => 'gma', 'Gohir.A01G222000' => 'ghi', 'Gohir.A03G044000' => 'ghi', 'Gohir.A03G044100' => 'ghi', 'Gohir.A04G083100' => 'ghi', 'Gohir.A07G127200' => 'ghi', 'Gohir.A07G132400' => 'ghi', 'Gohir.A08G000700' => 'ghi', 'Gohir.A11G327300' => 'ghi', 'Gohir.D01G211500' => 'ghi', 'Gohir.D03G123400' => 'ghi', 'Gohir.D03G123500' => 'ghi', 'Gohir.D04G121800' => 'ghi', 'Gohir.D07G131500' => 'ghi', 'Gohir.D07G136600' => 'ghi', 'Gohir.D08G011600' => 'ghi', 'Gohir.D11G346200' => 'ghi', 'Gorai.001G142800' => 'gra', 'Gorai.001G148700' => 'gra', 'Gorai.002G257300' => 'gra', 'Gorai.003G130000' => 'gra', 'Gorai.003G130100' => 'gra', 'Gorai.004G005300' => 'gra', 'Gorai.007G376500' => 'gra', 'Gorai.012G104700' => 'gra', 'GSVIVG01017946001' => 'vvi', 'GSVIVG01024928001' => 'vvi', 'GSVIVG01028227001' => 'vvi', 'GSVIVG01034151001' => 'vvi', 'HanXRQChr05g0135031' => 'han', 'HanXRQChr05g0135041' => 'han', 'HanXRQChr05g0140021' => 'han', 'HanXRQChr06g0178981' => 'han', 'HanXRQChr07g0188251' => 'han', 'HanXRQChr08g0235311' => 'han', 'HanXRQChr09g0271011' => 'han', 'HanXRQChr10g0293321' => 'han', 'HanXRQChr13g0388171' => 'han', 'Haze_00916' => 'cav', 'Haze_05063' => 'cav', 'Haze_20814' => 'cav', 'Haze_24128' => 'cav', 'Hma1.2p1_0745F.1_g212010' => 'hma', 'Hma1.2p1_0757F.1_g213260' => 'hma', 'Hma1.2p1_0936F.1_g238840' => 'hma', 'Hma1.2p1_1735F.1_g299890' => 'hma', 'Hma1.2p1_1861F.1_g305685' => 'hma', 'HPP92_003397' => 'vpl', 'HPP92_012597' => 'vpl', 'HPP92_015520' => 'vpl', 'HPP92_015539' => 'vpl', 'HPP92_020373' => 'vpl', 'Hund04938' => 'sun', 'Hund10677' => 'sun', 'Hund11033' => 'sun', 'Hund12155' => 'sun', 'Lalb_Chr01g0022551' => 'lal', 'Lalb_Chr03g0042341' => 'lal', 'Lalb_Chr07g0192931' => 'lal', 'Lalb_Chr12g0209551' => 'lal', 'Lalb_Chr19g0125251' => 'lal', 'Lalb_Chr19g0137891' => 'lal', 'Lalb_Chr21g0304641' => 'lal', 'Lalb_Chr21g0309881' => 'lal', 'Lj1A5T12' => 'lonja', 'Lj1C148G10' => 'lonja', 'Lj2A93T83' => 'lonja', 'Lj3A738G68' => 'lonja', 'Lj3C966T1' => 'lonja', 'Lj3g0018958' => 'lja', 'Lj3g0021831' => 'lja', 'Lj3g0025443' => 'lja', 'Lj4g0026809' => 'lja', 'Lj5g0012558' => 'lja', 'Lj5g0021586' => 'lja', 'Lsat_1_v5_gn_5_156840' => 'lsa', 'Lsat_1_v5_gn_8_73460' => 'lsa', 'Lsat_1_v5_gn_8_73481' => 'lsa', 'Lsat_1_v5_gn_9_31601' => 'lsa', 'Lsat_1_v5_gn_9_77320' => 'lsa', 'Manes.01G171300' => 'mes', 'Manes.01G171400' => 'mes', 'Manes.01G236100' => 'mes', 'Manes.02G130500' => 'mes', 'Manes.02G130600' => 'mes', 'Manes.03G180200' => 'mes', 'Manes.05G007000' => 'mes', 'Manes.08G084400' => 'mes', 'Manes.09G092600' => 'mes', 'Manes.15G027900' => 'mes', 'MBI04_g40948_MAGBIO' => 'mbi', 'MBI14_g12123_MAGBIO' => 'mbi', 'MBI18_g28915_MAGBIO' => 'mbi', 'MCO09G053' => 'mco', 'MCO11G782' => 'mco', 'MCO15G215' => 'mco', 'MD03G1088500' => 'mdo', 'MD03G1088600' => 'mdo', 'MD04G1130800' => 'mdo', 'MD09G1291700' => 'mdo', 'MD11G1097500' => 'mdo', 'MD11G1097600' => 'mdo', 'MD12G1143900' => 'mdo', 'MD13G1191400' => 'mdo', 'MD16G1191500' => 'mdo', 'Medtr1g085570' => 'mtr', 'Medtr1g104610' => 'mtr', 'Medtr2g097520' => 'mtr', 'Medtr4g021800' => 'mtr', 'Medtr4g021825' => 'mtr', 'Medtr4g064270' => 'mtr', 'Medtr4g064380' => 'mtr', 'Medtr7g062150' => 'mtr', 'MELO3C003138.2' => 'cme', 'MELO3C005187.2' => 'cme', 'MELO3C009252.2' => 'cme', 'MELO3C014481.2' => 'cme', 'MELO3C020616.2' => 'cme', 'MELO3C020617.2' => 'cme', 'MELO3C020618.2' => 'cme', 'Migut.G00328' => 'egut', 'Migut.J00320' => 'egut', 'Migut.L01000' => 'egut', 'Migut.L01953' => 'egut', 'MSTRG.10253' => 'ama', 'MSTRG.19077' => 'ama', 'MSTRG.26780' => 'ama', 'MSTRG.4023' => 'ama', 'MSTRG.5655' => 'ama', 'MSTRG.9992' => 'ama', 'Nitab4.5_0000043g0310' => 'nta', 'Nitab4.5_0000463g0080' => 'nta', 'Nitab4.5_0000705g0170' => 'nta', 'Nitab4.5_0001326g0060' => 'nta', 'Nitab4.5_0001628g0030' => 'nta', 'Nitab4.5_0002103g0110' => 'nta', 'Nitab4.5_0002946g0030' => 'nta', 'Nitab4.5_0004639g0030' => 'nta', 'Nn2g11149' => 'nnu', 'Nn2g13389' => 'nnu', 'Nn4g25326' => 'nnu', 'Nn4g26290' => 'nnu', 'Nn5g29865' => 'nnu', 'Oeu004163.1' => 'oeu', 'Oeu006901.1' => 'oeu', 'Oeu010096.1' => 'oeu', 'Oeu024340.1' => 'oeu', 'Oeu048369.1' => 'oeu', 'Os01g0973000' => 'osa', 'Os03g0273800' => 'osa', 'Os03g0701200' => 'osa', 'Os03g0834050' => 'osa', 'Os07g0634400' => 'osa', 'Peaxi162Scf00092g01414' => 'pax', 'Peaxi162Scf00165g00818' => 'pax', 'Peaxi162Scf00309g00516' => 'pax', 'Peaxi162Scf00774g00218' => 'pax', 'PGR004G1824' => 'pgr', 'PGR004G2606' => 'pgr', 'PGR031G2716' => 'pgr', 'PGR102G2460' => 'pgr', 'PGR142G2599' => 'pgr', 'PGSC0003DMG400000843' => 'stu', 'PGSC0003DMG400008829' => 'stu', 'PGSC0003DMG400030418' => 'stu', 'PGSC0003DMG400031834' => 'stu', 'PGSC0003DMG401028300' => 'stu', 'PGSC0003DMG402028300' => 'stu', 'Phvul.001G219300' => 'pvu', 'Phvul.007G056000' => 'pvu', 'Phvul.007G208000' => 'pvu', 'Phvul.008G119500' => 'pvu', 'Phvul.010G011200' => 'pvu', 'Phvul.010G014800' => 'pvu', 'Phvul.011G062900' => 'pvu', 'Phvul.L007043' => 'pvu', 'Potri.001G242300' => 'ptr', 'Potri.002G185300' => 'ptr', 'Potri.006G086900' => 'ptr', 'Potri.008G151700' => 'ptr', 'Potri.009G033500' => 'ptr', 'Potri.010G089300' => 'ptr', 'Potri.014G110800' => 'ptr', 'Pp3c27_8130' => 'ppa', 'Pp3c6_27410' => 'ppa', 'PRCOL_00001659' => 'pco', 'PRCOL_00001927' => 'pco', 'PRCOL_00003649' => 'pco', 'Prupe.1G011600' => 'ppe', 'Prupe.3G000800' => 'ppe', 'Prupe.3G001100' => 'ppe', 'Prupe.6G072700' => 'ppe', 'Prupe.6G072800' => 'ppe', 'Prupe.6G257300' => 'ppe', 'Prupe.8G033000' => 'ppe', 'Psat0s2633g0080' => 'psa', 'Psat0s3396g0080' => 'psa', 'Psat0s3396g0200' => 'psa', 'Psat3g139080' => 'psa', 'Psat5g285080' => 'psa', 'Psat6g157760' => 'psa', 'Psat6g208440' => 'psa', 'Psat7g215320' => 'psa', 'Psat7g215400' => 'psa', 'Psat7g235600' => 'psa', 'Psat7g235760' => 'psa', 'PSO063G4603' => 'pso', 'PSO210G0182' => 'pso', 'PSO210G0196' => 'pso', 'PSO339G0394' => 'pso', 'PSO339G4127' => 'pso', 'PSO513G0064' => 'pso', 'PSO761G0079' => 'pso', 'QL01p031003' => 'qlo', 'QL01p031078' => 'qlo', 'QL06p003004' => 'qlo', 'QL07p048731' => 'qlo', 'QL09p037427' => 'qlo', 'RcHm_v2.0_Chr3g0466361' => 'rch', 'RcHm_v2.0_Chr3g0485571' => 'rch', 'RcHm_v2.0_Chr4g0416551' => 'rch', 'RcHm_v2.0_Chr5g0065831' => 'rch', 'Rhsim01G0230500' => 'rsi', 'Rhsim05G0194000' => 'rsi', 'Rhsim08G0250400' => 'rsi', 'Sabra02G0131000' => 'sbr', 'Sabra06G0066300' => 'sbr', 'Sabra08G0115500' => 'sbr', 'Sabra09G0023900' => 'sbr', 'Sabra10G0054000' => 'sbr', 'Sabra14G0081500' => 'sbr', 'Sabra16G0147100' => 'sbr', 'SalBow2G2957' => 'sbo', 'SalBow4G3320' => 'sbo', 'SalBow8G1894' => 'sbo', 'Sc07g0007950' => 'sci', 'Sc12g0001360' => 'sci', 'Sc13g0004330' => 'sci', 'Sc20g0005010' => 'sci', 'Sed0000361' => 'sed', 'Sed0001706' => 'sed', 'Sed0002422' => 'sed', 'Sed0004029' => 'sed', 'Sed0004602' => 'sed', 'Sed0004943' => 'sed', 'Sed0008646' => 'sed', 'Sed0023313' => 'sed', 'Sed0024843' => 'sed', 'SEGI_00081' => 'sgi', 'SEGI_00947' => 'sgi', 'SEGI_04046' => 'sgi', 'SEGI_06880' => 'sgi', 'SEGI_09736' => 'sgi', 'SEGI_12741' => 'sgi', 'SEGI_14530' => 'sgi', 'SEGI_20705' => 'sgi', 'SEGI_26088' => 'sgi', 'SEGI_28323' => 'sgi', 'SEGI_33343' => 'sgi', 'SGA_v2.0_scaffold126G33775' => 'sas', 'SGA_v2.0_scaffold2G01337' => 'sas', 'SGA_v2.0_scaffold38G15006' => 'sas', 'SGA_v2.0_scaffold39G15264' => 'sas', 'SGA_v2.0_scaffold453G51880' => 'sas', 'SHI12696' => 'shi', 'SMO367G1096' => 'smo', 'Solyc01g068630.3' => 'sly', 'Solyc05g011880.3' => 'sly', 'Solyc06g076300.3' => 'sly', 'Solyc09g010940.4' => 'sly', 'Solyc09g075890.3' => 'sly', 'Sopen01g030560' => 'spe', 'Sopen05g006630' => 'spe', 'Sopen06g032720' => 'spe', 'Sopen09g005660' => 'spe', 'Sopen09g030690' => 'spe', 'Sp4g14540' => 'spa', 'Sp4g20030' => 'spa', 'Sp5g01320' => 'spa', 'Sp6g21170' => 'spa', 'Sp6g21180' => 'spa', 'Sp6g21190' => 'spa', 'Sp6g40220' => 'spa', 'TAR362G0122' => 'tar', 'TAR362G1338' => 'tar', 'TAR369G0590' => 'tar', 'TAR371G0824' => 'tar', 'TAR622G1429' => 'tar', 'TAR623G0734' => 'tar', 'TAR625G0441' => 'tar', 'TAR629G0976' => 'tar', 'TAR633G1195' => 'tar', 'TAR636G2660' => 'tar', 'THA.LOC104799440' => 'tha', 'THA.LOC104800966' => 'tha', 'THA.LOC104806559' => 'tha', 'THA.LOC104810765' => 'tha', 'THA.LOC104816266' => 'tha', 'THA.LOC104817419' => 'tha', 'THA.LOC104827021' => 'tha', 'Thecc.01G327400' => 'tca', 'Thecc.04G229200' => 'tca', 'Thecc.05G037400' => 'tca', 'Thecc.09G318600' => 'tca', 'Thecc.09G318700' => 'tca', 'Thhalv10006238m.g' => 'esa', 'Thhalv10014321m.g' => 'esa', 'Thhalv10014335m.g' => 'esa', 'Thhalv10015826m.g' => 'esa', 'Thhalv10017107m.g' => 'esa', 'Thhalv10017180m.g' => 'esa', 'Thhalv10029339m.g' => 'esa', 'TPR.G1699' => 'tpr', 'TPR.G23609' => 'tpr', 'TPR.G3081' => 'tpr', 'TPR.G40397' => 'tpr', 'TPR.G5522' => 'tpr', 'TPR.G5618' => 'tpr', 'TPR.G5626' => 'tpr', 'TWI09G1632' => 'twi', 'TWI23G1230' => 'twi', 'TWI53G1064' => 'twi', 'TWI59G0751' => 'twi', 'TWI74G0947' => 'twi', 'TWI77G0337' => 'twi', 'TWI79G1254' => 'twi', 'unitig_0.g2341' => 'ugi', 'unitig_26.g10006' => 'ugi', 'unitig_26.g10008' => 'ugi', 'unitig_26.g9192' => 'ugi', 'vmacro14547' => 'vma', 'vmacro15333' => 'vma', 'vmacro18743' => 'vma', 'vmacro20166' => 'vma', 'VMungo0331G0523' => 'vmu', 'VMungo0331G1202' => 'vmu', 'VMungo0720G1228' => 'vmu', 'VMungo0720G1514' => 'vmu', 'VMungo1080G0169' => 'vmu', 'VMungo1127G1475' => 'vmu', 'VMungo1383G1208' => 'vmu', 'VMungo1383G1698' => 'vmu', 'Zm00001eb012270' => 'zma', 'Zm00001eb054100' => 'zma', 'Zm00001eb063350' => 'zma', 'Zm00001eb328560' => 'zma', 'Zm00001eb342820' => 'zma', 'Zm00001eb362210' => 'zma', 'Zm00001eb397730' => 'zma', 'Zm00001eb399750' => 'zma' ), 'gf_id' => 'HOM05D000959', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000959' ), 'data_identifier' => 'HOM05D000959', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000959', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '622', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p07100' => 'bna', 'A03p11720' => 'bna', 'A05p08300' => 'bna', 'A05p13380' => 'bna', 'A09p54130' => 'bna', 'A10p16690' => 'bna', 'A10p16700' => 'bna', 'A10p33390' => 'bna', 'Aa31LG10G16020' => 'aar', 'Aa31LG1G11810' => 'aar', 'Aa31LG1G11830' => 'aar', 'Aa31LG1G22510' => 'aar', 'Aa31LG5G4890' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5793' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2310' => 'aag', 'Actinidia08499' => 'ach', 'Actinidia11262' => 'ach', 'Actinidia23926' => 'ach', 'Actinidia34420' => 'ach', 'Actinidia36970' => 'ach', 'Ah.02g111220' => 'amhyb', 'Ah.15g097750' => 'amhyb', 'AL4G27500' => 'aly', 'AL6G11470' => 'aly', 'AL8G35950' => 'aly', 'AL8G35960' => 'aly', 'AL8G35970' => 'aly', 'Aqoxy1G00912' => 'aox', 'Aqoxy2G02253' => 'aox', 'Aqoxy2G02411' => 'aox', 'Aqoxy5G00485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BZ66YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K8ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM4FUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6BF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HFV7XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25JBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0YNNV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MAKK6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P70IT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP2Z6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V61LZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YWP64R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3S9AI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7PGHH' => 'arhy', 'AT2G32150' => 'ath', 'AT3G62040' => 'ath', 'AT5G02230' => 'ath', 'AT5G59480' => 'ath', 'AT5G59490' => 'ath', 'ATR0332G060' => 'atr', 'ATR0559G190' => 'atr', 'ATR0693G294' => 'atr', 'Atru.chr3.3975' => 'acertr', 'Atru.chr3.3976' => 'acertr', 'Atru.chr3.3977' => 'acertr', 'Atru.chr4.2498' => 'acertr', 'Atru.chr5.838' => 'acertr', 'Atru.chr8.1990' => 'acertr', 'Atru.chr8.1991' => 'acertr', 'Atru.chr8.1992' => 'acertr', 'AUR62001759' => 'cqu', 'AUR62009545' => 'cqu', 'AUR62010474' => 'cqu', 'AUR62025820' => 'cqu', 'AUR62030422' => 'cqu', 'AUR62033605' => 'cqu', 'AUR62038615' => 'cqu', 'AUR62041347' => 'cqu', 'BcaB01g04574' => 'bca', 'BcaB02g09263' => 'bca', 'BcaB02g10453' => 'bca', 'BcaB05g22513' => 'bca', 'BcaB08g36253' => 'bca', 'BcaB08g36254' => 'bca', 'BcaC01g06519' => 'bca', 'BcaC02g11889' => 'bca', 'BcaC03g14010' => 'bca', 'BcaC03g18439' => 'bca', 'BcaC04g19765' => 'bca', 'BcaC09g48432' => 'bca', 'BcaNung07302' => 'bca', 'BolC2t06040H' => 'bol', 'BolC2t07346H' => 'bol', 'BolC3t13817H' => 'bol', 'BolC4t22625H' => 'bol', 'BolC4t23297H' => 'bol', 'BolC8t51278H' => 'bol', 'BolC9t58050H' => 'bol', 'BolC9t58051H' => 'bol', 'BolC9t60163H' => 'bol', 'BraA02t04712Z' => 'bra', 'BraA02t05791Z' => 'bra', 'BraA03t10483Z' => 'bra', 'BraA05t19795Z' => 'bra', 'BraA05t20276Z' => 'bra', 'BraA09t40827Z' => 'bra', 'BraA10t43750Z' => 'bra', 'BraA10t43751Z' => 'bra', 'BraA10t45370Z' => 'bra', 'C02p00400' => 'bna', 'C02p12460' => 'bna', 'C03p13680' => 'bna', 'C04p10270' => 'bna', 'C04p17500' => 'bna', 'C08p37010' => 'bna', 'C09p51880' => 'bna', 'C09p51890' => 'bna', 'C09p74300' => 'bna', 'CAN.G179.26' => 'can', 'CAN.G3384.1' => 'can', 'CAN.G394.68' => 'can', 'CAN.G907.13' => 'can', 'CANSAT11G0012' => 'cansat', 'CANSAT25G1586' => 'cansat', 'CANSAT35G0735' => 'cansat', 'CANSAT54G0556' => 'cansat', 'CANSAT64G0356' => 'cansat', 'CANSAT78G2042' => 'cansat', 'CARHR125920' => 'chi', 'CARHR131910' => 'chi', 'CARHR172390' => 'chi', 'CARHR211140' => 'chi', 'CARHR285850' => 'chi', 'CARHR285860' => 'chi', 'Carub.0004s1347' => 'cru', 'Carub.0004s1960' => 'cru', 'Carub.0005s2880' => 'cru', 'Carub.0006s0107' => 'cru', 'Carub.0008s2015' => 'cru', 'Carub.0008s2016' => 'cru', 'Carub.0008s2017' => 'cru', 'Ca_01315_v3' => 'car', 'Ca_05063_v3' => 'car', 'Ca_10231_v3' => 'car', 'Ca_10913_v3' => 'car', 'Ca_19156_v3' => 'car', 'Ca_23644_v3' => 'car', 'Ca_26735_v3' => 'car', 'Cc01_g13130' => 'ccan', 'Cc02_g21690' => 'ccan', 'Cc03_g03600' => 'ccan', 'Cc06_g02510' => 'ccan', 'CDE02G1265' => 'cde', 'CDE05G0415' => 'cde', 'CDE08G1082' => 'cde', 'Cfa005780' => 'cfa', 'Cfa011522' => 'cfa', 'Cfa011523' => 'cfa', 'Cfa015627' => 'cfa', 'Cfa017359' => 'cfa', 'Ciclev10005687m.g' => 'ccl', 'Ciclev10012173m.g' => 'ccl', 'Ciclev10021621m.g' => 'ccl', 'Ciclev10028968m.g' => 'ccl', 'Ciclev10029907m.g' => 'ccl', 'CiPaw.01G164800' => 'cil', 'CiPaw.07G083700' => 'cil', 'CiPaw.07G127000' => 'cil', 'CiPaw.07G136900' => 'cil', 'CiPaw.08G081700' => 'cil', 'CiPaw.09G194600' => 'cil', 'CiPaw.10G146500' => 'cil', 'CiPaw.13G091500' => 'cil', 'CiPaw.13G091600' => 'cil', 'ClCG00G003390' => 'cla', 'ClCG01G007220' => 'cla', 'ClCG03G001370' => 'cla', 'ClCG04G008100' => 'cla', 'ClCG06G006110' => 'cla', 'ClCG06G006130' => 'cla', 'ClCG10G021210' => 'cla', 'COL.COLO4_07648' => 'col', 'COL.COLO4_07650' => 'col', 'COL.COLO4_07651' => 'col', 'COL.COLO4_14780' => 'col', 'COL.COLO4_18546' => 'col', 'COL.COLO4_18547' => 'col', 'COL.COLO4_23103' => 'col', 'COL.COLO4_30419' => 'col', 'COL.COLO4_34232' => 'col', 'Cpa.g.sc169.20' => 'cpa', 'Cpa.g.sc57.45' => 'cpa', 'Cpa.g.sc58.124' => 'cpa', 'Cpa.g.sc58.125' => 'cpa', 'Cpa.g.sc81.118' => 'cpa', 'Cpa.g.sc81.119' => 'cpa', 'Cre12.g524700' => 'cre', 'CsaV3_1G034430' => 'csa', 'CsaV3_1G034440' => 'csa', 'CsaV3_1G034450' => 'csa', 'CsaV3_3G034830' => 'csa', 'CsaV3_4G025090' => 'csa', 'CsaV3_5G018660' => 'csa', 'CsaV3_6G038160' => 'csa', 'CSS0003447' => 'camsi', 'CSS0017840' => 'camsi', 'CSS0019260' => 'camsi', 'CSS0040375' => 'camsi', 'CSS0042533' => 'camsi', 'DCAR_005960' => 'dca', 'DCAR_012104' => 'dca', 'DCAR_012105' => 'dca', 'DCAR_012293' => 'dca', 'DCAR_015632' => 'dca', 'DCAR_024602' => 'dca', 'DCAR_028752' => 'dca', 'Dinv06261' => 'din', 'Dinv13982' => 'din', 'Dinv17029' => 'din', 'Dinv18463' => 'din', 'Dinv33181' => 'din', 'Dinv35585' => 'din', 'Dinv37161' => 'din', 'Dinv42977' => 'din', 'Dinv43122' => 'din', 'Dinv44517' => 'din', 'Duzib093G0256' => 'dzi', 'Duzib106G1254' => 'dzi', 'Duzib128G1789' => 'dzi', 'Duzib133G0633' => 'dzi', 'Duzib138G0510' => 'dzi', 'Duzib150G1084' => 'dzi', 'Duzib168G0488' => 'dzi', 'Duzib168G1523' => 'dzi', 'Duzib170G0133' => 'dzi', 'ECA234G1433' => 'eca', 'ECA236G1432' => 'eca', 'ECA236G2256' => 'eca', 'ECA236G2365' => 'eca', 'ECA236G4830' => 'eca', 'ECA248G1505' => 'eca', 'EL10Ac3g06431' => 'bvu', 'EL10Ac5g12577' => 'bvu', 'EL10Ac6g13533' => 'bvu', 'EL10Ac7g16045' => 'bvu', 'Eucgr.A01281' => 'egr', 'Eucgr.B02326' => 'egr', 'Eucgr.H03532' => 'egr', 'Eucgr.K00553' => 'egr', 'Eucgr.K03116' => 'egr', 'FAN02G3963' => 'fan', 'FAN05G0438' => 'fan', 'FAN09G2434' => 'fan', 'FAN12G3984' => 'fan', 'FAN14G0798' => 'fan', 'FAN17G0652' => 'fan', 'FAN19G1988' => 'fan', 'FAN22G0632' => 'fan', 'FAN23G0387' => 'fan', 'FAN26G1323' => 'fan', 'FAN28G0666' => 'fan', 'FvH4_1g26080' => 'fve', 'FvH4_3g36780' => 'fve', 'FvH4_4g15270' => 'fve', 'FvH4_6g13490' => 'fve', 'Glyma.01G098700' => 'gma', 'Glyma.03G065900' => 'gma', 'Glyma.03G073754' => 'gma', 'Glyma.03G073758' => 'gma', 'Glyma.03G083200' => 'gma', 'Glyma.03G225500' => 'gma', 'Glyma.05G037766' => 'gma', 'Glyma.07G133500' => 'gma', 'Glyma.10G139400' => 'gma', 'Glyma.10G248900' => 'gma', 'Glyma.11G137800' => 'gma', 'Glyma.12G061300' => 'gma', 'Glyma.13G337900' => 'gma', 'Glyma.15G036600' => 'gma', 'Glyma.18G182800' => 'gma', 'Glyma.19G222500' => 'gma', 'Glyma.20G144800' => 'gma', 'Gohir.A01G222000' => 'ghi', 'Gohir.A03G044000' => 'ghi', 'Gohir.A03G044100' => 'ghi', 'Gohir.A04G083100' => 'ghi', 'Gohir.A07G127200' => 'ghi', 'Gohir.A07G132400' => 'ghi', 'Gohir.A08G000700' => 'ghi', 'Gohir.A11G327300' => 'ghi', 'Gohir.D01G211500' => 'ghi', 'Gohir.D03G123400' => 'ghi', 'Gohir.D03G123500' => 'ghi', 'Gohir.D04G121800' => 'ghi', 'Gohir.D07G131500' => 'ghi', 'Gohir.D07G136600' => 'ghi', 'Gohir.D08G011600' => 'ghi', 'Gohir.D11G346200' => 'ghi', 'Gorai.001G142800' => 'gra', 'Gorai.001G148700' => 'gra', 'Gorai.002G257300' => 'gra', 'Gorai.003G130000' => 'gra', 'Gorai.003G130100' => 'gra', 'Gorai.004G005300' => 'gra', 'Gorai.007G376500' => 'gra', 'Gorai.012G104700' => 'gra', 'GSVIVG01017946001' => 'vvi', 'GSVIVG01024928001' => 'vvi', 'GSVIVG01028227001' => 'vvi', 'GSVIVG01034151001' => 'vvi', 'HanXRQChr05g0135031' => 'han', 'HanXRQChr05g0135041' => 'han', 'HanXRQChr05g0140021' => 'han', 'HanXRQChr06g0178981' => 'han', 'HanXRQChr07g0188251' => 'han', 'HanXRQChr08g0235311' => 'han', 'HanXRQChr09g0271011' => 'han', 'HanXRQChr10g0293321' => 'han', 'HanXRQChr13g0388171' => 'han', 'Haze_00916' => 'cav', 'Haze_05063' => 'cav', 'Haze_20814' => 'cav', 'Haze_24128' => 'cav', 'Hma1.2p1_0745F.1_g212010' => 'hma', 'Hma1.2p1_0757F.1_g213260' => 'hma', 'Hma1.2p1_0936F.1_g238840' => 'hma', 'Hma1.2p1_1735F.1_g299890' => 'hma', 'Hma1.2p1_1861F.1_g305685' => 'hma', 'HPP92_003397' => 'vpl', 'HPP92_012597' => 'vpl', 'HPP92_015520' => 'vpl', 'HPP92_015539' => 'vpl', 'HPP92_020373' => 'vpl', 'Hund04938' => 'sun', 'Hund10677' => 'sun', 'Hund11033' => 'sun', 'Hund12155' => 'sun', 'Lalb_Chr01g0022551' => 'lal', 'Lalb_Chr03g0042341' => 'lal', 'Lalb_Chr07g0192931' => 'lal', 'Lalb_Chr12g0209551' => 'lal', 'Lalb_Chr19g0125251' => 'lal', 'Lalb_Chr19g0137891' => 'lal', 'Lalb_Chr21g0304641' => 'lal', 'Lalb_Chr21g0309881' => 'lal', 'Lj1A5T12' => 'lonja', 'Lj1C148G10' => 'lonja', 'Lj2A93T83' => 'lonja', 'Lj3A738G68' => 'lonja', 'Lj3C966T1' => 'lonja', 'Lj3g0018958' => 'lja', 'Lj3g0021831' => 'lja', 'Lj3g0025443' => 'lja', 'Lj4g0026809' => 'lja', 'Lj5g0012558' => 'lja', 'Lj5g0021586' => 'lja', 'Lsat_1_v5_gn_5_156840' => 'lsa', 'Lsat_1_v5_gn_8_73460' => 'lsa', 'Lsat_1_v5_gn_8_73481' => 'lsa', 'Lsat_1_v5_gn_9_31601' => 'lsa', 'Lsat_1_v5_gn_9_77320' => 'lsa', 'Manes.01G171300' => 'mes', 'Manes.01G171400' => 'mes', 'Manes.01G236100' => 'mes', 'Manes.02G130500' => 'mes', 'Manes.02G130600' => 'mes', 'Manes.03G180200' => 'mes', 'Manes.05G007000' => 'mes', 'Manes.08G084400' => 'mes', 'Manes.09G092600' => 'mes', 'Manes.15G027900' => 'mes', 'MBI04_g40948_MAGBIO' => 'mbi', 'MBI14_g12123_MAGBIO' => 'mbi', 'MBI18_g28915_MAGBIO' => 'mbi', 'MCO09G053' => 'mco', 'MCO11G782' => 'mco', 'MCO15G215' => 'mco', 'MD03G1088500' => 'mdo', 'MD03G1088600' => 'mdo', 'MD04G1130800' => 'mdo', 'MD09G1291700' => 'mdo', 'MD11G1097500' => 'mdo', 'MD11G1097600' => 'mdo', 'MD12G1143900' => 'mdo', 'MD13G1191400' => 'mdo', 'MD16G1191500' => 'mdo', 'Medtr1g085570' => 'mtr', 'Medtr1g104610' => 'mtr', 'Medtr2g097520' => 'mtr', 'Medtr4g021800' => 'mtr', 'Medtr4g021825' => 'mtr', 'Medtr4g064270' => 'mtr', 'Medtr4g064380' => 'mtr', 'Medtr7g062150' => 'mtr', 'MELO3C003138.2' => 'cme', 'MELO3C005187.2' => 'cme', 'MELO3C009252.2' => 'cme', 'MELO3C014481.2' => 'cme', 'MELO3C020616.2' => 'cme', 'MELO3C020617.2' => 'cme', 'MELO3C020618.2' => 'cme', 'Migut.G00328' => 'egut', 'Migut.J00320' => 'egut', 'Migut.L01000' => 'egut', 'Migut.L01953' => 'egut', 'MSTRG.10253' => 'ama', 'MSTRG.19077' => 'ama', 'MSTRG.26780' => 'ama', 'MSTRG.4023' => 'ama', 'MSTRG.5655' => 'ama', 'MSTRG.9992' => 'ama', 'Nitab4.5_0000043g0310' => 'nta', 'Nitab4.5_0000463g0080' => 'nta', 'Nitab4.5_0000705g0170' => 'nta', 'Nitab4.5_0001326g0060' => 'nta', 'Nitab4.5_0001628g0030' => 'nta', 'Nitab4.5_0002103g0110' => 'nta', 'Nitab4.5_0002946g0030' => 'nta', 'Nitab4.5_0004639g0030' => 'nta', 'Nn2g11149' => 'nnu', 'Nn2g13389' => 'nnu', 'Nn4g25326' => 'nnu', 'Nn4g26290' => 'nnu', 'Nn5g29865' => 'nnu', 'Oeu004163.1' => 'oeu', 'Oeu006901.1' => 'oeu', 'Oeu010096.1' => 'oeu', 'Oeu024340.1' => 'oeu', 'Oeu048369.1' => 'oeu', 'Os01g0973000' => 'osa', 'Os03g0273800' => 'osa', 'Os03g0701200' => 'osa', 'Os03g0834050' => 'osa', 'Os07g0634400' => 'osa', 'Peaxi162Scf00092g01414' => 'pax', 'Peaxi162Scf00165g00818' => 'pax', 'Peaxi162Scf00309g00516' => 'pax', 'Peaxi162Scf00774g00218' => 'pax', 'PGR004G1824' => 'pgr', 'PGR004G2606' => 'pgr', 'PGR031G2716' => 'pgr', 'PGR102G2460' => 'pgr', 'PGR142G2599' => 'pgr', 'PGSC0003DMG400000843' => 'stu', 'PGSC0003DMG400008829' => 'stu', 'PGSC0003DMG400030418' => 'stu', 'PGSC0003DMG400031834' => 'stu', 'PGSC0003DMG401028300' => 'stu', 'PGSC0003DMG402028300' => 'stu', 'Phvul.001G219300' => 'pvu', 'Phvul.007G056000' => 'pvu', 'Phvul.007G208000' => 'pvu', 'Phvul.008G119500' => 'pvu', 'Phvul.010G011200' => 'pvu', 'Phvul.010G014800' => 'pvu', 'Phvul.011G062900' => 'pvu', 'Phvul.L007043' => 'pvu', 'Potri.001G242300' => 'ptr', 'Potri.002G185300' => 'ptr', 'Potri.006G086900' => 'ptr', 'Potri.008G151700' => 'ptr', 'Potri.009G033500' => 'ptr', 'Potri.010G089300' => 'ptr', 'Potri.014G110800' => 'ptr', 'Pp3c27_8130' => 'ppa', 'Pp3c6_27410' => 'ppa', 'PRCOL_00001659' => 'pco', 'PRCOL_00001927' => 'pco', 'PRCOL_00003649' => 'pco', 'Prupe.1G011600' => 'ppe', 'Prupe.3G000800' => 'ppe', 'Prupe.3G001100' => 'ppe', 'Prupe.6G072700' => 'ppe', 'Prupe.6G072800' => 'ppe', 'Prupe.6G257300' => 'ppe', 'Prupe.8G033000' => 'ppe', 'Psat0s2633g0080' => 'psa', 'Psat0s3396g0080' => 'psa', 'Psat0s3396g0200' => 'psa', 'Psat3g139080' => 'psa', 'Psat5g285080' => 'psa', 'Psat6g157760' => 'psa', 'Psat6g208440' => 'psa', 'Psat7g215320' => 'psa', 'Psat7g215400' => 'psa', 'Psat7g235600' => 'psa', 'Psat7g235760' => 'psa', 'PSO063G4603' => 'pso', 'PSO210G0182' => 'pso', 'PSO210G0196' => 'pso', 'PSO339G0394' => 'pso', 'PSO339G4127' => 'pso', 'PSO513G0064' => 'pso', 'PSO761G0079' => 'pso', 'QL01p031003' => 'qlo', 'QL01p031078' => 'qlo', 'QL06p003004' => 'qlo', 'QL07p048731' => 'qlo', 'QL09p037427' => 'qlo', 'RcHm_v2.0_Chr3g0466361' => 'rch', 'RcHm_v2.0_Chr3g0485571' => 'rch', 'RcHm_v2.0_Chr4g0416551' => 'rch', 'RcHm_v2.0_Chr5g0065831' => 'rch', 'Rhsim01G0230500' => 'rsi', 'Rhsim05G0194000' => 'rsi', 'Rhsim08G0250400' => 'rsi', 'Sabra02G0131000' => 'sbr', 'Sabra06G0066300' => 'sbr', 'Sabra08G0115500' => 'sbr', 'Sabra09G0023900' => 'sbr', 'Sabra10G0054000' => 'sbr', 'Sabra14G0081500' => 'sbr', 'Sabra16G0147100' => 'sbr', 'SalBow2G2957' => 'sbo', 'SalBow4G3320' => 'sbo', 'SalBow8G1894' => 'sbo', 'Sc07g0007950' => 'sci', 'Sc12g0001360' => 'sci', 'Sc13g0004330' => 'sci', 'Sc20g0005010' => 'sci', 'Sed0000361' => 'sed', 'Sed0001706' => 'sed', 'Sed0002422' => 'sed', 'Sed0004029' => 'sed', 'Sed0004602' => 'sed', 'Sed0004943' => 'sed', 'Sed0008646' => 'sed', 'Sed0023313' => 'sed', 'Sed0024843' => 'sed', 'SEGI_00081' => 'sgi', 'SEGI_00947' => 'sgi', 'SEGI_04046' => 'sgi', 'SEGI_06880' => 'sgi', 'SEGI_09736' => 'sgi', 'SEGI_12741' => 'sgi', 'SEGI_14530' => 'sgi', 'SEGI_20705' => 'sgi', 'SEGI_26088' => 'sgi', 'SEGI_28323' => 'sgi', 'SEGI_33343' => 'sgi', 'SGA_v2.0_scaffold126G33775' => 'sas', 'SGA_v2.0_scaffold2G01337' => 'sas', 'SGA_v2.0_scaffold38G15006' => 'sas', 'SGA_v2.0_scaffold39G15264' => 'sas', 'SGA_v2.0_scaffold453G51880' => 'sas', 'SHI12696' => 'shi', 'SMO367G1096' => 'smo', 'Solyc01g068630.3' => 'sly', 'Solyc05g011880.3' => 'sly', 'Solyc06g076300.3' => 'sly', 'Solyc09g010940.4' => 'sly', 'Solyc09g075890.3' => 'sly', 'Sopen01g030560' => 'spe', 'Sopen05g006630' => 'spe', 'Sopen06g032720' => 'spe', 'Sopen09g005660' => 'spe', 'Sopen09g030690' => 'spe', 'Sp4g14540' => 'spa', 'Sp4g20030' => 'spa', 'Sp5g01320' => 'spa', 'Sp6g21170' => 'spa', 'Sp6g21180' => 'spa', 'Sp6g21190' => 'spa', 'Sp6g40220' => 'spa', 'TAR362G0122' => 'tar', 'TAR362G1338' => 'tar', 'TAR369G0590' => 'tar', 'TAR371G0824' => 'tar', 'TAR622G1429' => 'tar', 'TAR623G0734' => 'tar', 'TAR625G0441' => 'tar', 'TAR629G0976' => 'tar', 'TAR633G1195' => 'tar', 'TAR636G2660' => 'tar', 'THA.LOC104799440' => 'tha', 'THA.LOC104800966' => 'tha', 'THA.LOC104806559' => 'tha', 'THA.LOC104810765' => 'tha', 'THA.LOC104816266' => 'tha', 'THA.LOC104817419' => 'tha', 'THA.LOC104827021' => 'tha', 'Thecc.01G327400' => 'tca', 'Thecc.04G229200' => 'tca', 'Thecc.05G037400' => 'tca', 'Thecc.09G318600' => 'tca', 'Thecc.09G318700' => 'tca', 'Thhalv10006238m.g' => 'esa', 'Thhalv10014321m.g' => 'esa', 'Thhalv10014335m.g' => 'esa', 'Thhalv10015826m.g' => 'esa', 'Thhalv10017107m.g' => 'esa', 'Thhalv10017180m.g' => 'esa', 'Thhalv10029339m.g' => 'esa', 'TPR.G1699' => 'tpr', 'TPR.G23609' => 'tpr', 'TPR.G3081' => 'tpr', 'TPR.G40397' => 'tpr', 'TPR.G5522' => 'tpr', 'TPR.G5618' => 'tpr', 'TPR.G5626' => 'tpr', 'TWI09G1632' => 'twi', 'TWI23G1230' => 'twi', 'TWI53G1064' => 'twi', 'TWI59G0751' => 'twi', 'TWI74G0947' => 'twi', 'TWI77G0337' => 'twi', 'TWI79G1254' => 'twi', 'unitig_0.g2341' => 'ugi', 'unitig_26.g10006' => 'ugi', 'unitig_26.g10008' => 'ugi', 'unitig_26.g9192' => 'ugi', 'vmacro14547' => 'vma', 'vmacro15333' => 'vma', 'vmacro18743' => 'vma', 'vmacro20166' => 'vma', 'VMungo0331G0523' => 'vmu', 'VMungo0331G1202' => 'vmu', 'VMungo0720G1228' => 'vmu', 'VMungo0720G1514' => 'vmu', 'VMungo1080G0169' => 'vmu', 'VMungo1127G1475' => 'vmu', 'VMungo1383G1208' => 'vmu', 'VMungo1383G1698' => 'vmu', 'Zm00001eb012270' => 'zma', 'Zm00001eb054100' => 'zma', 'Zm00001eb063350' => 'zma', 'Zm00001eb328560' => 'zma', 'Zm00001eb342820' => 'zma', 'Zm00001eb362210' => 'zma', 'Zm00001eb397730' => 'zma', 'Zm00001eb399750' => 'zma' ) $gf_id = 'HOM05D000959' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000959' ) $data_identifier = 'HOM05D000959' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 5, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 5, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 10, 'mbi' => (int) 3, 'mco' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 2, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 3, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 11, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399750' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000959', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '622', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p07100' => 'bna', 'A03p11720' => 'bna', 'A05p08300' => 'bna', 'A05p13380' => 'bna', 'A09p54130' => 'bna', 'A10p16690' => 'bna', 'A10p16700' => 'bna', 'A10p33390' => 'bna', 'Aa31LG10G16020' => 'aar', 'Aa31LG1G11810' => 'aar', 'Aa31LG1G11830' => 'aar', 'Aa31LG1G22510' => 'aar', 'Aa31LG5G4890' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5793' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2310' => 'aag', 'Actinidia08499' => 'ach', 'Actinidia11262' => 'ach', 'Actinidia23926' => 'ach', 'Actinidia34420' => 'ach', 'Actinidia36970' => 'ach', 'Ah.02g111220' => 'amhyb', 'Ah.15g097750' => 'amhyb', 'AL4G27500' => 'aly', 'AL6G11470' => 'aly', 'AL8G35950' => 'aly', 'AL8G35960' => 'aly', 'AL8G35970' => 'aly', 'Aqoxy1G00912' => 'aox', 'Aqoxy2G02253' => 'aox', 'Aqoxy2G02411' => 'aox', 'Aqoxy5G00485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BZ66YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K8ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM4FUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6BF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HFV7XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25JBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0YNNV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MAKK6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P70IT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP2Z6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V61LZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YWP64R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3S9AI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7PGHH' => 'arhy', 'AT2G32150' => 'ath', 'AT3G62040' => 'ath', 'AT5G02230' => 'ath', 'AT5G59480' => 'ath', 'AT5G59490' => 'ath', 'ATR0332G060' => 'atr', 'ATR0559G190' => 'atr', 'ATR0693G294' => 'atr', 'Atru.chr3.3975' => 'acertr', 'Atru.chr3.3976' => 'acertr', 'Atru.chr3.3977' => 'acertr', 'Atru.chr4.2498' => 'acertr', 'Atru.chr5.838' => 'acertr', 'Atru.chr8.1990' => 'acertr', 'Atru.chr8.1991' => 'acertr', 'Atru.chr8.1992' => 'acertr', 'AUR62001759' => 'cqu', 'AUR62009545' => 'cqu', 'AUR62010474' => 'cqu', 'AUR62025820' => 'cqu', 'AUR62030422' => 'cqu', 'AUR62033605' => 'cqu', 'AUR62038615' => 'cqu', 'AUR62041347' => 'cqu', 'BcaB01g04574' => 'bca', 'BcaB02g09263' => 'bca', 'BcaB02g10453' => 'bca', 'BcaB05g22513' => 'bca', 'BcaB08g36253' => 'bca', 'BcaB08g36254' => 'bca', 'BcaC01g06519' => 'bca', 'BcaC02g11889' => 'bca', 'BcaC03g14010' => 'bca', 'BcaC03g18439' => 'bca', 'BcaC04g19765' => 'bca', 'BcaC09g48432' => 'bca', 'BcaNung07302' => 'bca', 'BolC2t06040H' => 'bol', 'BolC2t07346H' => 'bol', 'BolC3t13817H' => 'bol', 'BolC4t22625H' => 'bol', 'BolC4t23297H' => 'bol', 'BolC8t51278H' => 'bol', 'BolC9t58050H' => 'bol', 'BolC9t58051H' => 'bol', 'BolC9t60163H' => 'bol', 'BraA02t04712Z' => 'bra', 'BraA02t05791Z' => 'bra', 'BraA03t10483Z' => 'bra', 'BraA05t19795Z' => 'bra', 'BraA05t20276Z' => 'bra', 'BraA09t40827Z' => 'bra', 'BraA10t43750Z' => 'bra', 'BraA10t43751Z' => 'bra', 'BraA10t45370Z' => 'bra', 'C02p00400' => 'bna', 'C02p12460' => 'bna', 'C03p13680' => 'bna', 'C04p10270' => 'bna', 'C04p17500' => 'bna', 'C08p37010' => 'bna', 'C09p51880' => 'bna', 'C09p51890' => 'bna', 'C09p74300' => 'bna', 'CAN.G179.26' => 'can', 'CAN.G3384.1' => 'can', 'CAN.G394.68' => 'can', 'CAN.G907.13' => 'can', 'CANSAT11G0012' => 'cansat', 'CANSAT25G1586' => 'cansat', 'CANSAT35G0735' => 'cansat', 'CANSAT54G0556' => 'cansat', 'CANSAT64G0356' => 'cansat', 'CANSAT78G2042' => 'cansat', 'CARHR125920' => 'chi', 'CARHR131910' => 'chi', 'CARHR172390' => 'chi', 'CARHR211140' => 'chi', 'CARHR285850' => 'chi', 'CARHR285860' => 'chi', 'Carub.0004s1347' => 'cru', 'Carub.0004s1960' => 'cru', 'Carub.0005s2880' => 'cru', 'Carub.0006s0107' => 'cru', 'Carub.0008s2015' => 'cru', 'Carub.0008s2016' => 'cru', 'Carub.0008s2017' => 'cru', 'Ca_01315_v3' => 'car', 'Ca_05063_v3' => 'car', 'Ca_10231_v3' => 'car', 'Ca_10913_v3' => 'car', 'Ca_19156_v3' => 'car', 'Ca_23644_v3' => 'car', 'Ca_26735_v3' => 'car', 'Cc01_g13130' => 'ccan', 'Cc02_g21690' => 'ccan', 'Cc03_g03600' => 'ccan', 'Cc06_g02510' => 'ccan', 'CDE02G1265' => 'cde', 'CDE05G0415' => 'cde', 'CDE08G1082' => 'cde', 'Cfa005780' => 'cfa', 'Cfa011522' => 'cfa', 'Cfa011523' => 'cfa', 'Cfa015627' => 'cfa', 'Cfa017359' => 'cfa', 'Ciclev10005687m.g' => 'ccl', 'Ciclev10012173m.g' => 'ccl', 'Ciclev10021621m.g' => 'ccl', 'Ciclev10028968m.g' => 'ccl', 'Ciclev10029907m.g' => 'ccl', 'CiPaw.01G164800' => 'cil', 'CiPaw.07G083700' => 'cil', 'CiPaw.07G127000' => 'cil', 'CiPaw.07G136900' => 'cil', 'CiPaw.08G081700' => 'cil', 'CiPaw.09G194600' => 'cil', 'CiPaw.10G146500' => 'cil', 'CiPaw.13G091500' => 'cil', 'CiPaw.13G091600' => 'cil', 'ClCG00G003390' => 'cla', 'ClCG01G007220' => 'cla', 'ClCG03G001370' => 'cla', 'ClCG04G008100' => 'cla', 'ClCG06G006110' => 'cla', 'ClCG06G006130' => 'cla', 'ClCG10G021210' => 'cla', 'COL.COLO4_07648' => 'col', 'COL.COLO4_07650' => 'col', 'COL.COLO4_07651' => 'col', 'COL.COLO4_14780' => 'col', 'COL.COLO4_18546' => 'col', 'COL.COLO4_18547' => 'col', 'COL.COLO4_23103' => 'col', 'COL.COLO4_30419' => 'col', 'COL.COLO4_34232' => 'col', 'Cpa.g.sc169.20' => 'cpa', 'Cpa.g.sc57.45' => 'cpa', 'Cpa.g.sc58.124' => 'cpa', 'Cpa.g.sc58.125' => 'cpa', 'Cpa.g.sc81.118' => 'cpa', 'Cpa.g.sc81.119' => 'cpa', 'Cre12.g524700' => 'cre', 'CsaV3_1G034430' => 'csa', 'CsaV3_1G034440' => 'csa', 'CsaV3_1G034450' => 'csa', 'CsaV3_3G034830' => 'csa', 'CsaV3_4G025090' => 'csa', 'CsaV3_5G018660' => 'csa', 'CsaV3_6G038160' => 'csa', 'CSS0003447' => 'camsi', 'CSS0017840' => 'camsi', 'CSS0019260' => 'camsi', 'CSS0040375' => 'camsi', 'CSS0042533' => 'camsi', 'DCAR_005960' => 'dca', 'DCAR_012104' => 'dca', 'DCAR_012105' => 'dca', 'DCAR_012293' => 'dca', 'DCAR_015632' => 'dca', 'DCAR_024602' => 'dca', 'DCAR_028752' => 'dca', 'Dinv06261' => 'din', 'Dinv13982' => 'din', 'Dinv17029' => 'din', 'Dinv18463' => 'din', 'Dinv33181' => 'din', 'Dinv35585' => 'din', 'Dinv37161' => 'din', 'Dinv42977' => 'din', 'Dinv43122' => 'din', 'Dinv44517' => 'din', 'Duzib093G0256' => 'dzi', 'Duzib106G1254' => 'dzi', 'Duzib128G1789' => 'dzi', 'Duzib133G0633' => 'dzi', 'Duzib138G0510' => 'dzi', 'Duzib150G1084' => 'dzi', 'Duzib168G0488' => 'dzi', 'Duzib168G1523' => 'dzi', 'Duzib170G0133' => 'dzi', 'ECA234G1433' => 'eca', 'ECA236G1432' => 'eca', 'ECA236G2256' => 'eca', 'ECA236G2365' => 'eca', 'ECA236G4830' => 'eca', 'ECA248G1505' => 'eca', 'EL10Ac3g06431' => 'bvu', 'EL10Ac5g12577' => 'bvu', 'EL10Ac6g13533' => 'bvu', 'EL10Ac7g16045' => 'bvu', 'Eucgr.A01281' => 'egr', 'Eucgr.B02326' => 'egr', 'Eucgr.H03532' => 'egr', 'Eucgr.K00553' => 'egr', 'Eucgr.K03116' => 'egr', 'FAN02G3963' => 'fan', 'FAN05G0438' => 'fan', 'FAN09G2434' => 'fan', 'FAN12G3984' => 'fan', 'FAN14G0798' => 'fan', 'FAN17G0652' => 'fan', 'FAN19G1988' => 'fan', 'FAN22G0632' => 'fan', 'FAN23G0387' => 'fan', 'FAN26G1323' => 'fan', 'FAN28G0666' => 'fan', 'FvH4_1g26080' => 'fve', 'FvH4_3g36780' => 'fve', 'FvH4_4g15270' => 'fve', 'FvH4_6g13490' => 'fve', 'Glyma.01G098700' => 'gma', 'Glyma.03G065900' => 'gma', 'Glyma.03G073754' => 'gma', 'Glyma.03G073758' => 'gma', 'Glyma.03G083200' => 'gma', 'Glyma.03G225500' => 'gma', 'Glyma.05G037766' => 'gma', 'Glyma.07G133500' => 'gma', 'Glyma.10G139400' => 'gma', 'Glyma.10G248900' => 'gma', 'Glyma.11G137800' => 'gma', 'Glyma.12G061300' => 'gma', 'Glyma.13G337900' => 'gma', 'Glyma.15G036600' => 'gma', 'Glyma.18G182800' => 'gma', 'Glyma.19G222500' => 'gma', 'Glyma.20G144800' => 'gma', 'Gohir.A01G222000' => 'ghi', 'Gohir.A03G044000' => 'ghi', 'Gohir.A03G044100' => 'ghi', 'Gohir.A04G083100' => 'ghi', 'Gohir.A07G127200' => 'ghi', 'Gohir.A07G132400' => 'ghi', 'Gohir.A08G000700' => 'ghi', 'Gohir.A11G327300' => 'ghi', 'Gohir.D01G211500' => 'ghi', 'Gohir.D03G123400' => 'ghi', 'Gohir.D03G123500' => 'ghi', 'Gohir.D04G121800' => 'ghi', 'Gohir.D07G131500' => 'ghi', 'Gohir.D07G136600' => 'ghi', 'Gohir.D08G011600' => 'ghi', 'Gohir.D11G346200' => 'ghi', 'Gorai.001G142800' => 'gra', 'Gorai.001G148700' => 'gra', 'Gorai.002G257300' => 'gra', 'Gorai.003G130000' => 'gra', 'Gorai.003G130100' => 'gra', 'Gorai.004G005300' => 'gra', 'Gorai.007G376500' => 'gra', 'Gorai.012G104700' => 'gra', 'GSVIVG01017946001' => 'vvi', 'GSVIVG01024928001' => 'vvi', 'GSVIVG01028227001' => 'vvi', 'GSVIVG01034151001' => 'vvi', 'HanXRQChr05g0135031' => 'han', 'HanXRQChr05g0135041' => 'han', 'HanXRQChr05g0140021' => 'han', 'HanXRQChr06g0178981' => 'han', 'HanXRQChr07g0188251' => 'han', 'HanXRQChr08g0235311' => 'han', 'HanXRQChr09g0271011' => 'han', 'HanXRQChr10g0293321' => 'han', 'HanXRQChr13g0388171' => 'han', 'Haze_00916' => 'cav', 'Haze_05063' => 'cav', 'Haze_20814' => 'cav', 'Haze_24128' => 'cav', 'Hma1.2p1_0745F.1_g212010' => 'hma', 'Hma1.2p1_0757F.1_g213260' => 'hma', 'Hma1.2p1_0936F.1_g238840' => 'hma', 'Hma1.2p1_1735F.1_g299890' => 'hma', 'Hma1.2p1_1861F.1_g305685' => 'hma', 'HPP92_003397' => 'vpl', 'HPP92_012597' => 'vpl', 'HPP92_015520' => 'vpl', 'HPP92_015539' => 'vpl', 'HPP92_020373' => 'vpl', 'Hund04938' => 'sun', 'Hund10677' => 'sun', 'Hund11033' => 'sun', 'Hund12155' => 'sun', 'Lalb_Chr01g0022551' => 'lal', 'Lalb_Chr03g0042341' => 'lal', 'Lalb_Chr07g0192931' => 'lal', 'Lalb_Chr12g0209551' => 'lal', 'Lalb_Chr19g0125251' => 'lal', 'Lalb_Chr19g0137891' => 'lal', 'Lalb_Chr21g0304641' => 'lal', 'Lalb_Chr21g0309881' => 'lal', 'Lj1A5T12' => 'lonja', 'Lj1C148G10' => 'lonja', 'Lj2A93T83' => 'lonja', 'Lj3A738G68' => 'lonja', 'Lj3C966T1' => 'lonja', 'Lj3g0018958' => 'lja', 'Lj3g0021831' => 'lja', 'Lj3g0025443' => 'lja', 'Lj4g0026809' => 'lja', 'Lj5g0012558' => 'lja', 'Lj5g0021586' => 'lja', 'Lsat_1_v5_gn_5_156840' => 'lsa', 'Lsat_1_v5_gn_8_73460' => 'lsa', 'Lsat_1_v5_gn_8_73481' => 'lsa', 'Lsat_1_v5_gn_9_31601' => 'lsa', 'Lsat_1_v5_gn_9_77320' => 'lsa', 'Manes.01G171300' => 'mes', 'Manes.01G171400' => 'mes', 'Manes.01G236100' => 'mes', 'Manes.02G130500' => 'mes', 'Manes.02G130600' => 'mes', 'Manes.03G180200' => 'mes', 'Manes.05G007000' => 'mes', 'Manes.08G084400' => 'mes', 'Manes.09G092600' => 'mes', 'Manes.15G027900' => 'mes', 'MBI04_g40948_MAGBIO' => 'mbi', 'MBI14_g12123_MAGBIO' => 'mbi', 'MBI18_g28915_MAGBIO' => 'mbi', 'MCO09G053' => 'mco', 'MCO11G782' => 'mco', 'MCO15G215' => 'mco', 'MD03G1088500' => 'mdo', 'MD03G1088600' => 'mdo', 'MD04G1130800' => 'mdo', 'MD09G1291700' => 'mdo', 'MD11G1097500' => 'mdo', 'MD11G1097600' => 'mdo', 'MD12G1143900' => 'mdo', 'MD13G1191400' => 'mdo', 'MD16G1191500' => 'mdo', 'Medtr1g085570' => 'mtr', 'Medtr1g104610' => 'mtr', 'Medtr2g097520' => 'mtr', 'Medtr4g021800' => 'mtr', 'Medtr4g021825' => 'mtr', 'Medtr4g064270' => 'mtr', 'Medtr4g064380' => 'mtr', 'Medtr7g062150' => 'mtr', 'MELO3C003138.2' => 'cme', 'MELO3C005187.2' => 'cme', 'MELO3C009252.2' => 'cme', 'MELO3C014481.2' => 'cme', 'MELO3C020616.2' => 'cme', 'MELO3C020617.2' => 'cme', 'MELO3C020618.2' => 'cme', 'Migut.G00328' => 'egut', 'Migut.J00320' => 'egut', 'Migut.L01000' => 'egut', 'Migut.L01953' => 'egut', 'MSTRG.10253' => 'ama', 'MSTRG.19077' => 'ama', 'MSTRG.26780' => 'ama', 'MSTRG.4023' => 'ama', 'MSTRG.5655' => 'ama', 'MSTRG.9992' => 'ama', 'Nitab4.5_0000043g0310' => 'nta', 'Nitab4.5_0000463g0080' => 'nta', 'Nitab4.5_0000705g0170' => 'nta', 'Nitab4.5_0001326g0060' => 'nta', 'Nitab4.5_0001628g0030' => 'nta', 'Nitab4.5_0002103g0110' => 'nta', 'Nitab4.5_0002946g0030' => 'nta', 'Nitab4.5_0004639g0030' => 'nta', 'Nn2g11149' => 'nnu', 'Nn2g13389' => 'nnu', 'Nn4g25326' => 'nnu', 'Nn4g26290' => 'nnu', 'Nn5g29865' => 'nnu', 'Oeu004163.1' => 'oeu', 'Oeu006901.1' => 'oeu', 'Oeu010096.1' => 'oeu', 'Oeu024340.1' => 'oeu', 'Oeu048369.1' => 'oeu', 'Os01g0973000' => 'osa', 'Os03g0273800' => 'osa', 'Os03g0701200' => 'osa', 'Os03g0834050' => 'osa', 'Os07g0634400' => 'osa', 'Peaxi162Scf00092g01414' => 'pax', 'Peaxi162Scf00165g00818' => 'pax', 'Peaxi162Scf00309g00516' => 'pax', 'Peaxi162Scf00774g00218' => 'pax', 'PGR004G1824' => 'pgr', 'PGR004G2606' => 'pgr', 'PGR031G2716' => 'pgr', 'PGR102G2460' => 'pgr', 'PGR142G2599' => 'pgr', 'PGSC0003DMG400000843' => 'stu', 'PGSC0003DMG400008829' => 'stu', 'PGSC0003DMG400030418' => 'stu', 'PGSC0003DMG400031834' => 'stu', 'PGSC0003DMG401028300' => 'stu', 'PGSC0003DMG402028300' => 'stu', 'Phvul.001G219300' => 'pvu', 'Phvul.007G056000' => 'pvu', 'Phvul.007G208000' => 'pvu', 'Phvul.008G119500' => 'pvu', 'Phvul.010G011200' => 'pvu', 'Phvul.010G014800' => 'pvu', 'Phvul.011G062900' => 'pvu', 'Phvul.L007043' => 'pvu', 'Potri.001G242300' => 'ptr', 'Potri.002G185300' => 'ptr', 'Potri.006G086900' => 'ptr', 'Potri.008G151700' => 'ptr', 'Potri.009G033500' => 'ptr', 'Potri.010G089300' => 'ptr', 'Potri.014G110800' => 'ptr', 'Pp3c27_8130' => 'ppa', 'Pp3c6_27410' => 'ppa', 'PRCOL_00001659' => 'pco', 'PRCOL_00001927' => 'pco', 'PRCOL_00003649' => 'pco', 'Prupe.1G011600' => 'ppe', 'Prupe.3G000800' => 'ppe', 'Prupe.3G001100' => 'ppe', 'Prupe.6G072700' => 'ppe', 'Prupe.6G072800' => 'ppe', 'Prupe.6G257300' => 'ppe', 'Prupe.8G033000' => 'ppe', 'Psat0s2633g0080' => 'psa', 'Psat0s3396g0080' => 'psa', 'Psat0s3396g0200' => 'psa', 'Psat3g139080' => 'psa', 'Psat5g285080' => 'psa', 'Psat6g157760' => 'psa', 'Psat6g208440' => 'psa', 'Psat7g215320' => 'psa', 'Psat7g215400' => 'psa', 'Psat7g235600' => 'psa', 'Psat7g235760' => 'psa', 'PSO063G4603' => 'pso', 'PSO210G0182' => 'pso', 'PSO210G0196' => 'pso', 'PSO339G0394' => 'pso', 'PSO339G4127' => 'pso', 'PSO513G0064' => 'pso', 'PSO761G0079' => 'pso', 'QL01p031003' => 'qlo', 'QL01p031078' => 'qlo', 'QL06p003004' => 'qlo', 'QL07p048731' => 'qlo', 'QL09p037427' => 'qlo', 'RcHm_v2.0_Chr3g0466361' => 'rch', 'RcHm_v2.0_Chr3g0485571' => 'rch', 'RcHm_v2.0_Chr4g0416551' => 'rch', 'RcHm_v2.0_Chr5g0065831' => 'rch', 'Rhsim01G0230500' => 'rsi', 'Rhsim05G0194000' => 'rsi', 'Rhsim08G0250400' => 'rsi', 'Sabra02G0131000' => 'sbr', 'Sabra06G0066300' => 'sbr', 'Sabra08G0115500' => 'sbr', 'Sabra09G0023900' => 'sbr', 'Sabra10G0054000' => 'sbr', 'Sabra14G0081500' => 'sbr', 'Sabra16G0147100' => 'sbr', 'SalBow2G2957' => 'sbo', 'SalBow4G3320' => 'sbo', 'SalBow8G1894' => 'sbo', 'Sc07g0007950' => 'sci', 'Sc12g0001360' => 'sci', 'Sc13g0004330' => 'sci', 'Sc20g0005010' => 'sci', 'Sed0000361' => 'sed', 'Sed0001706' => 'sed', 'Sed0002422' => 'sed', 'Sed0004029' => 'sed', 'Sed0004602' => 'sed', 'Sed0004943' => 'sed', 'Sed0008646' => 'sed', 'Sed0023313' => 'sed', 'Sed0024843' => 'sed', 'SEGI_00081' => 'sgi', 'SEGI_00947' => 'sgi', 'SEGI_04046' => 'sgi', 'SEGI_06880' => 'sgi', 'SEGI_09736' => 'sgi', 'SEGI_12741' => 'sgi', 'SEGI_14530' => 'sgi', 'SEGI_20705' => 'sgi', 'SEGI_26088' => 'sgi', 'SEGI_28323' => 'sgi', 'SEGI_33343' => 'sgi', 'SGA_v2.0_scaffold126G33775' => 'sas', 'SGA_v2.0_scaffold2G01337' => 'sas', 'SGA_v2.0_scaffold38G15006' => 'sas', 'SGA_v2.0_scaffold39G15264' => 'sas', 'SGA_v2.0_scaffold453G51880' => 'sas', 'SHI12696' => 'shi', 'SMO367G1096' => 'smo', 'Solyc01g068630.3' => 'sly', 'Solyc05g011880.3' => 'sly', 'Solyc06g076300.3' => 'sly', 'Solyc09g010940.4' => 'sly', 'Solyc09g075890.3' => 'sly', 'Sopen01g030560' => 'spe', 'Sopen05g006630' => 'spe', 'Sopen06g032720' => 'spe', 'Sopen09g005660' => 'spe', 'Sopen09g030690' => 'spe', 'Sp4g14540' => 'spa', 'Sp4g20030' => 'spa', 'Sp5g01320' => 'spa', 'Sp6g21170' => 'spa', 'Sp6g21180' => 'spa', 'Sp6g21190' => 'spa', 'Sp6g40220' => 'spa', 'TAR362G0122' => 'tar', 'TAR362G1338' => 'tar', 'TAR369G0590' => 'tar', 'TAR371G0824' => 'tar', 'TAR622G1429' => 'tar', 'TAR623G0734' => 'tar', 'TAR625G0441' => 'tar', 'TAR629G0976' => 'tar', 'TAR633G1195' => 'tar', 'TAR636G2660' => 'tar', 'THA.LOC104799440' => 'tha', 'THA.LOC104800966' => 'tha', 'THA.LOC104806559' => 'tha', 'THA.LOC104810765' => 'tha', 'THA.LOC104816266' => 'tha', 'THA.LOC104817419' => 'tha', 'THA.LOC104827021' => 'tha', 'Thecc.01G327400' => 'tca', 'Thecc.04G229200' => 'tca', 'Thecc.05G037400' => 'tca', 'Thecc.09G318600' => 'tca', 'Thecc.09G318700' => 'tca', 'Thhalv10006238m.g' => 'esa', 'Thhalv10014321m.g' => 'esa', 'Thhalv10014335m.g' => 'esa', 'Thhalv10015826m.g' => 'esa', 'Thhalv10017107m.g' => 'esa', 'Thhalv10017180m.g' => 'esa', 'Thhalv10029339m.g' => 'esa', 'TPR.G1699' => 'tpr', 'TPR.G23609' => 'tpr', 'TPR.G3081' => 'tpr', 'TPR.G40397' => 'tpr', 'TPR.G5522' => 'tpr', 'TPR.G5618' => 'tpr', 'TPR.G5626' => 'tpr', 'TWI09G1632' => 'twi', 'TWI23G1230' => 'twi', 'TWI53G1064' => 'twi', 'TWI59G0751' => 'twi', 'TWI74G0947' => 'twi', 'TWI77G0337' => 'twi', 'TWI79G1254' => 'twi', 'unitig_0.g2341' => 'ugi', 'unitig_26.g10006' => 'ugi', 'unitig_26.g10008' => 'ugi', 'unitig_26.g9192' => 'ugi', 'vmacro14547' => 'vma', 'vmacro15333' => 'vma', 'vmacro18743' => 'vma', 'vmacro20166' => 'vma', 'VMungo0331G0523' => 'vmu', 'VMungo0331G1202' => 'vmu', 'VMungo0720G1228' => 'vmu', 'VMungo0720G1514' => 'vmu', 'VMungo1080G0169' => 'vmu', 'VMungo1127G1475' => 'vmu', 'VMungo1383G1208' => 'vmu', 'VMungo1383G1698' => 'vmu', 'Zm00001eb012270' => 'zma', 'Zm00001eb054100' => 'zma', 'Zm00001eb063350' => 'zma', 'Zm00001eb328560' => 'zma', 'Zm00001eb342820' => 'zma', 'Zm00001eb362210' => 'zma', 'Zm00001eb397730' => 'zma', 'Zm00001eb399750' => 'zma' ), 'gf_id' => 'HOM05D000959', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000959' ), 'data_identifier' => 'HOM05D000959', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000959', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '622', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p07100' => 'bna', 'A03p11720' => 'bna', 'A05p08300' => 'bna', 'A05p13380' => 'bna', 'A09p54130' => 'bna', 'A10p16690' => 'bna', 'A10p16700' => 'bna', 'A10p33390' => 'bna', 'Aa31LG10G16020' => 'aar', 'Aa31LG1G11810' => 'aar', 'Aa31LG1G11830' => 'aar', 'Aa31LG1G22510' => 'aar', 'Aa31LG5G4890' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5793' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2310' => 'aag', 'Actinidia08499' => 'ach', 'Actinidia11262' => 'ach', 'Actinidia23926' => 'ach', 'Actinidia34420' => 'ach', 'Actinidia36970' => 'ach', 'Ah.02g111220' => 'amhyb', 'Ah.15g097750' => 'amhyb', 'AL4G27500' => 'aly', 'AL6G11470' => 'aly', 'AL8G35950' => 'aly', 'AL8G35960' => 'aly', 'AL8G35970' => 'aly', 'Aqoxy1G00912' => 'aox', 'Aqoxy2G02253' => 'aox', 'Aqoxy2G02411' => 'aox', 'Aqoxy5G00485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BZ66YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K8ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM4FUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6BF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HFV7XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25JBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0YNNV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MAKK6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P70IT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP2Z6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V61LZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YWP64R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3S9AI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7PGHH' => 'arhy', 'AT2G32150' => 'ath', 'AT3G62040' => 'ath', 'AT5G02230' => 'ath', 'AT5G59480' => 'ath', 'AT5G59490' => 'ath', 'ATR0332G060' => 'atr', 'ATR0559G190' => 'atr', 'ATR0693G294' => 'atr', 'Atru.chr3.3975' => 'acertr', 'Atru.chr3.3976' => 'acertr', 'Atru.chr3.3977' => 'acertr', 'Atru.chr4.2498' => 'acertr', 'Atru.chr5.838' => 'acertr', 'Atru.chr8.1990' => 'acertr', 'Atru.chr8.1991' => 'acertr', 'Atru.chr8.1992' => 'acertr', 'AUR62001759' => 'cqu', 'AUR62009545' => 'cqu', 'AUR62010474' => 'cqu', 'AUR62025820' => 'cqu', 'AUR62030422' => 'cqu', 'AUR62033605' => 'cqu', 'AUR62038615' => 'cqu', 'AUR62041347' => 'cqu', 'BcaB01g04574' => 'bca', 'BcaB02g09263' => 'bca', 'BcaB02g10453' => 'bca', 'BcaB05g22513' => 'bca', 'BcaB08g36253' => 'bca', 'BcaB08g36254' => 'bca', 'BcaC01g06519' => 'bca', 'BcaC02g11889' => 'bca', 'BcaC03g14010' => 'bca', 'BcaC03g18439' => 'bca', 'BcaC04g19765' => 'bca', 'BcaC09g48432' => 'bca', 'BcaNung07302' => 'bca', 'BolC2t06040H' => 'bol', 'BolC2t07346H' => 'bol', 'BolC3t13817H' => 'bol', 'BolC4t22625H' => 'bol', 'BolC4t23297H' => 'bol', 'BolC8t51278H' => 'bol', 'BolC9t58050H' => 'bol', 'BolC9t58051H' => 'bol', 'BolC9t60163H' => 'bol', 'BraA02t04712Z' => 'bra', 'BraA02t05791Z' => 'bra', 'BraA03t10483Z' => 'bra', 'BraA05t19795Z' => 'bra', 'BraA05t20276Z' => 'bra', 'BraA09t40827Z' => 'bra', 'BraA10t43750Z' => 'bra', 'BraA10t43751Z' => 'bra', 'BraA10t45370Z' => 'bra', 'C02p00400' => 'bna', 'C02p12460' => 'bna', 'C03p13680' => 'bna', 'C04p10270' => 'bna', 'C04p17500' => 'bna', 'C08p37010' => 'bna', 'C09p51880' => 'bna', 'C09p51890' => 'bna', 'C09p74300' => 'bna', 'CAN.G179.26' => 'can', 'CAN.G3384.1' => 'can', 'CAN.G394.68' => 'can', 'CAN.G907.13' => 'can', 'CANSAT11G0012' => 'cansat', 'CANSAT25G1586' => 'cansat', 'CANSAT35G0735' => 'cansat', 'CANSAT54G0556' => 'cansat', 'CANSAT64G0356' => 'cansat', 'CANSAT78G2042' => 'cansat', 'CARHR125920' => 'chi', 'CARHR131910' => 'chi', 'CARHR172390' => 'chi', 'CARHR211140' => 'chi', 'CARHR285850' => 'chi', 'CARHR285860' => 'chi', 'Carub.0004s1347' => 'cru', 'Carub.0004s1960' => 'cru', 'Carub.0005s2880' => 'cru', 'Carub.0006s0107' => 'cru', 'Carub.0008s2015' => 'cru', 'Carub.0008s2016' => 'cru', 'Carub.0008s2017' => 'cru', 'Ca_01315_v3' => 'car', 'Ca_05063_v3' => 'car', 'Ca_10231_v3' => 'car', 'Ca_10913_v3' => 'car', 'Ca_19156_v3' => 'car', 'Ca_23644_v3' => 'car', 'Ca_26735_v3' => 'car', 'Cc01_g13130' => 'ccan', 'Cc02_g21690' => 'ccan', 'Cc03_g03600' => 'ccan', 'Cc06_g02510' => 'ccan', 'CDE02G1265' => 'cde', 'CDE05G0415' => 'cde', 'CDE08G1082' => 'cde', 'Cfa005780' => 'cfa', 'Cfa011522' => 'cfa', 'Cfa011523' => 'cfa', 'Cfa015627' => 'cfa', 'Cfa017359' => 'cfa', 'Ciclev10005687m.g' => 'ccl', 'Ciclev10012173m.g' => 'ccl', 'Ciclev10021621m.g' => 'ccl', 'Ciclev10028968m.g' => 'ccl', 'Ciclev10029907m.g' => 'ccl', 'CiPaw.01G164800' => 'cil', 'CiPaw.07G083700' => 'cil', 'CiPaw.07G127000' => 'cil', 'CiPaw.07G136900' => 'cil', 'CiPaw.08G081700' => 'cil', 'CiPaw.09G194600' => 'cil', 'CiPaw.10G146500' => 'cil', 'CiPaw.13G091500' => 'cil', 'CiPaw.13G091600' => 'cil', 'ClCG00G003390' => 'cla', 'ClCG01G007220' => 'cla', 'ClCG03G001370' => 'cla', 'ClCG04G008100' => 'cla', 'ClCG06G006110' => 'cla', 'ClCG06G006130' => 'cla', 'ClCG10G021210' => 'cla', 'COL.COLO4_07648' => 'col', 'COL.COLO4_07650' => 'col', 'COL.COLO4_07651' => 'col', 'COL.COLO4_14780' => 'col', 'COL.COLO4_18546' => 'col', 'COL.COLO4_18547' => 'col', 'COL.COLO4_23103' => 'col', 'COL.COLO4_30419' => 'col', 'COL.COLO4_34232' => 'col', 'Cpa.g.sc169.20' => 'cpa', 'Cpa.g.sc57.45' => 'cpa', 'Cpa.g.sc58.124' => 'cpa', 'Cpa.g.sc58.125' => 'cpa', 'Cpa.g.sc81.118' => 'cpa', 'Cpa.g.sc81.119' => 'cpa', 'Cre12.g524700' => 'cre', 'CsaV3_1G034430' => 'csa', 'CsaV3_1G034440' => 'csa', 'CsaV3_1G034450' => 'csa', 'CsaV3_3G034830' => 'csa', 'CsaV3_4G025090' => 'csa', 'CsaV3_5G018660' => 'csa', 'CsaV3_6G038160' => 'csa', 'CSS0003447' => 'camsi', 'CSS0017840' => 'camsi', 'CSS0019260' => 'camsi', 'CSS0040375' => 'camsi', 'CSS0042533' => 'camsi', 'DCAR_005960' => 'dca', 'DCAR_012104' => 'dca', 'DCAR_012105' => 'dca', 'DCAR_012293' => 'dca', 'DCAR_015632' => 'dca', 'DCAR_024602' => 'dca', 'DCAR_028752' => 'dca', 'Dinv06261' => 'din', 'Dinv13982' => 'din', 'Dinv17029' => 'din', 'Dinv18463' => 'din', 'Dinv33181' => 'din', 'Dinv35585' => 'din', 'Dinv37161' => 'din', 'Dinv42977' => 'din', 'Dinv43122' => 'din', 'Dinv44517' => 'din', 'Duzib093G0256' => 'dzi', 'Duzib106G1254' => 'dzi', 'Duzib128G1789' => 'dzi', 'Duzib133G0633' => 'dzi', 'Duzib138G0510' => 'dzi', 'Duzib150G1084' => 'dzi', 'Duzib168G0488' => 'dzi', 'Duzib168G1523' => 'dzi', 'Duzib170G0133' => 'dzi', 'ECA234G1433' => 'eca', 'ECA236G1432' => 'eca', 'ECA236G2256' => 'eca', 'ECA236G2365' => 'eca', 'ECA236G4830' => 'eca', 'ECA248G1505' => 'eca', 'EL10Ac3g06431' => 'bvu', 'EL10Ac5g12577' => 'bvu', 'EL10Ac6g13533' => 'bvu', 'EL10Ac7g16045' => 'bvu', 'Eucgr.A01281' => 'egr', 'Eucgr.B02326' => 'egr', 'Eucgr.H03532' => 'egr', 'Eucgr.K00553' => 'egr', 'Eucgr.K03116' => 'egr', 'FAN02G3963' => 'fan', 'FAN05G0438' => 'fan', 'FAN09G2434' => 'fan', 'FAN12G3984' => 'fan', 'FAN14G0798' => 'fan', 'FAN17G0652' => 'fan', 'FAN19G1988' => 'fan', 'FAN22G0632' => 'fan', 'FAN23G0387' => 'fan', 'FAN26G1323' => 'fan', 'FAN28G0666' => 'fan', 'FvH4_1g26080' => 'fve', 'FvH4_3g36780' => 'fve', 'FvH4_4g15270' => 'fve', 'FvH4_6g13490' => 'fve', 'Glyma.01G098700' => 'gma', 'Glyma.03G065900' => 'gma', 'Glyma.03G073754' => 'gma', 'Glyma.03G073758' => 'gma', 'Glyma.03G083200' => 'gma', 'Glyma.03G225500' => 'gma', 'Glyma.05G037766' => 'gma', 'Glyma.07G133500' => 'gma', 'Glyma.10G139400' => 'gma', 'Glyma.10G248900' => 'gma', 'Glyma.11G137800' => 'gma', 'Glyma.12G061300' => 'gma', 'Glyma.13G337900' => 'gma', 'Glyma.15G036600' => 'gma', 'Glyma.18G182800' => 'gma', 'Glyma.19G222500' => 'gma', 'Glyma.20G144800' => 'gma', 'Gohir.A01G222000' => 'ghi', 'Gohir.A03G044000' => 'ghi', 'Gohir.A03G044100' => 'ghi', 'Gohir.A04G083100' => 'ghi', 'Gohir.A07G127200' => 'ghi', 'Gohir.A07G132400' => 'ghi', 'Gohir.A08G000700' => 'ghi', 'Gohir.A11G327300' => 'ghi', 'Gohir.D01G211500' => 'ghi', 'Gohir.D03G123400' => 'ghi', 'Gohir.D03G123500' => 'ghi', 'Gohir.D04G121800' => 'ghi', 'Gohir.D07G131500' => 'ghi', 'Gohir.D07G136600' => 'ghi', 'Gohir.D08G011600' => 'ghi', 'Gohir.D11G346200' => 'ghi', 'Gorai.001G142800' => 'gra', 'Gorai.001G148700' => 'gra', 'Gorai.002G257300' => 'gra', 'Gorai.003G130000' => 'gra', 'Gorai.003G130100' => 'gra', 'Gorai.004G005300' => 'gra', 'Gorai.007G376500' => 'gra', 'Gorai.012G104700' => 'gra', 'GSVIVG01017946001' => 'vvi', 'GSVIVG01024928001' => 'vvi', 'GSVIVG01028227001' => 'vvi', 'GSVIVG01034151001' => 'vvi', 'HanXRQChr05g0135031' => 'han', 'HanXRQChr05g0135041' => 'han', 'HanXRQChr05g0140021' => 'han', 'HanXRQChr06g0178981' => 'han', 'HanXRQChr07g0188251' => 'han', 'HanXRQChr08g0235311' => 'han', 'HanXRQChr09g0271011' => 'han', 'HanXRQChr10g0293321' => 'han', 'HanXRQChr13g0388171' => 'han', 'Haze_00916' => 'cav', 'Haze_05063' => 'cav', 'Haze_20814' => 'cav', 'Haze_24128' => 'cav', 'Hma1.2p1_0745F.1_g212010' => 'hma', 'Hma1.2p1_0757F.1_g213260' => 'hma', 'Hma1.2p1_0936F.1_g238840' => 'hma', 'Hma1.2p1_1735F.1_g299890' => 'hma', 'Hma1.2p1_1861F.1_g305685' => 'hma', 'HPP92_003397' => 'vpl', 'HPP92_012597' => 'vpl', 'HPP92_015520' => 'vpl', 'HPP92_015539' => 'vpl', 'HPP92_020373' => 'vpl', 'Hund04938' => 'sun', 'Hund10677' => 'sun', 'Hund11033' => 'sun', 'Hund12155' => 'sun', 'Lalb_Chr01g0022551' => 'lal', 'Lalb_Chr03g0042341' => 'lal', 'Lalb_Chr07g0192931' => 'lal', 'Lalb_Chr12g0209551' => 'lal', 'Lalb_Chr19g0125251' => 'lal', 'Lalb_Chr19g0137891' => 'lal', 'Lalb_Chr21g0304641' => 'lal', 'Lalb_Chr21g0309881' => 'lal', 'Lj1A5T12' => 'lonja', 'Lj1C148G10' => 'lonja', 'Lj2A93T83' => 'lonja', 'Lj3A738G68' => 'lonja', 'Lj3C966T1' => 'lonja', 'Lj3g0018958' => 'lja', 'Lj3g0021831' => 'lja', 'Lj3g0025443' => 'lja', 'Lj4g0026809' => 'lja', 'Lj5g0012558' => 'lja', 'Lj5g0021586' => 'lja', 'Lsat_1_v5_gn_5_156840' => 'lsa', 'Lsat_1_v5_gn_8_73460' => 'lsa', 'Lsat_1_v5_gn_8_73481' => 'lsa', 'Lsat_1_v5_gn_9_31601' => 'lsa', 'Lsat_1_v5_gn_9_77320' => 'lsa', 'Manes.01G171300' => 'mes', 'Manes.01G171400' => 'mes', 'Manes.01G236100' => 'mes', 'Manes.02G130500' => 'mes', 'Manes.02G130600' => 'mes', 'Manes.03G180200' => 'mes', 'Manes.05G007000' => 'mes', 'Manes.08G084400' => 'mes', 'Manes.09G092600' => 'mes', 'Manes.15G027900' => 'mes', 'MBI04_g40948_MAGBIO' => 'mbi', 'MBI14_g12123_MAGBIO' => 'mbi', 'MBI18_g28915_MAGBIO' => 'mbi', 'MCO09G053' => 'mco', 'MCO11G782' => 'mco', 'MCO15G215' => 'mco', 'MD03G1088500' => 'mdo', 'MD03G1088600' => 'mdo', 'MD04G1130800' => 'mdo', 'MD09G1291700' => 'mdo', 'MD11G1097500' => 'mdo', 'MD11G1097600' => 'mdo', 'MD12G1143900' => 'mdo', 'MD13G1191400' => 'mdo', 'MD16G1191500' => 'mdo', 'Medtr1g085570' => 'mtr', 'Medtr1g104610' => 'mtr', 'Medtr2g097520' => 'mtr', 'Medtr4g021800' => 'mtr', 'Medtr4g021825' => 'mtr', 'Medtr4g064270' => 'mtr', 'Medtr4g064380' => 'mtr', 'Medtr7g062150' => 'mtr', 'MELO3C003138.2' => 'cme', 'MELO3C005187.2' => 'cme', 'MELO3C009252.2' => 'cme', 'MELO3C014481.2' => 'cme', 'MELO3C020616.2' => 'cme', 'MELO3C020617.2' => 'cme', 'MELO3C020618.2' => 'cme', 'Migut.G00328' => 'egut', 'Migut.J00320' => 'egut', 'Migut.L01000' => 'egut', 'Migut.L01953' => 'egut', 'MSTRG.10253' => 'ama', 'MSTRG.19077' => 'ama', 'MSTRG.26780' => 'ama', 'MSTRG.4023' => 'ama', 'MSTRG.5655' => 'ama', 'MSTRG.9992' => 'ama', 'Nitab4.5_0000043g0310' => 'nta', 'Nitab4.5_0000463g0080' => 'nta', 'Nitab4.5_0000705g0170' => 'nta', 'Nitab4.5_0001326g0060' => 'nta', 'Nitab4.5_0001628g0030' => 'nta', 'Nitab4.5_0002103g0110' => 'nta', 'Nitab4.5_0002946g0030' => 'nta', 'Nitab4.5_0004639g0030' => 'nta', 'Nn2g11149' => 'nnu', 'Nn2g13389' => 'nnu', 'Nn4g25326' => 'nnu', 'Nn4g26290' => 'nnu', 'Nn5g29865' => 'nnu', 'Oeu004163.1' => 'oeu', 'Oeu006901.1' => 'oeu', 'Oeu010096.1' => 'oeu', 'Oeu024340.1' => 'oeu', 'Oeu048369.1' => 'oeu', 'Os01g0973000' => 'osa', 'Os03g0273800' => 'osa', 'Os03g0701200' => 'osa', 'Os03g0834050' => 'osa', 'Os07g0634400' => 'osa', 'Peaxi162Scf00092g01414' => 'pax', 'Peaxi162Scf00165g00818' => 'pax', 'Peaxi162Scf00309g00516' => 'pax', 'Peaxi162Scf00774g00218' => 'pax', 'PGR004G1824' => 'pgr', 'PGR004G2606' => 'pgr', 'PGR031G2716' => 'pgr', 'PGR102G2460' => 'pgr', 'PGR142G2599' => 'pgr', 'PGSC0003DMG400000843' => 'stu', 'PGSC0003DMG400008829' => 'stu', 'PGSC0003DMG400030418' => 'stu', 'PGSC0003DMG400031834' => 'stu', 'PGSC0003DMG401028300' => 'stu', 'PGSC0003DMG402028300' => 'stu', 'Phvul.001G219300' => 'pvu', 'Phvul.007G056000' => 'pvu', 'Phvul.007G208000' => 'pvu', 'Phvul.008G119500' => 'pvu', 'Phvul.010G011200' => 'pvu', 'Phvul.010G014800' => 'pvu', 'Phvul.011G062900' => 'pvu', 'Phvul.L007043' => 'pvu', 'Potri.001G242300' => 'ptr', 'Potri.002G185300' => 'ptr', 'Potri.006G086900' => 'ptr', 'Potri.008G151700' => 'ptr', 'Potri.009G033500' => 'ptr', 'Potri.010G089300' => 'ptr', 'Potri.014G110800' => 'ptr', 'Pp3c27_8130' => 'ppa', 'Pp3c6_27410' => 'ppa', 'PRCOL_00001659' => 'pco', 'PRCOL_00001927' => 'pco', 'PRCOL_00003649' => 'pco', 'Prupe.1G011600' => 'ppe', 'Prupe.3G000800' => 'ppe', 'Prupe.3G001100' => 'ppe', 'Prupe.6G072700' => 'ppe', 'Prupe.6G072800' => 'ppe', 'Prupe.6G257300' => 'ppe', 'Prupe.8G033000' => 'ppe', 'Psat0s2633g0080' => 'psa', 'Psat0s3396g0080' => 'psa', 'Psat0s3396g0200' => 'psa', 'Psat3g139080' => 'psa', 'Psat5g285080' => 'psa', 'Psat6g157760' => 'psa', 'Psat6g208440' => 'psa', 'Psat7g215320' => 'psa', 'Psat7g215400' => 'psa', 'Psat7g235600' => 'psa', 'Psat7g235760' => 'psa', 'PSO063G4603' => 'pso', 'PSO210G0182' => 'pso', 'PSO210G0196' => 'pso', 'PSO339G0394' => 'pso', 'PSO339G4127' => 'pso', 'PSO513G0064' => 'pso', 'PSO761G0079' => 'pso', 'QL01p031003' => 'qlo', 'QL01p031078' => 'qlo', 'QL06p003004' => 'qlo', 'QL07p048731' => 'qlo', 'QL09p037427' => 'qlo', 'RcHm_v2.0_Chr3g0466361' => 'rch', 'RcHm_v2.0_Chr3g0485571' => 'rch', 'RcHm_v2.0_Chr4g0416551' => 'rch', 'RcHm_v2.0_Chr5g0065831' => 'rch', 'Rhsim01G0230500' => 'rsi', 'Rhsim05G0194000' => 'rsi', 'Rhsim08G0250400' => 'rsi', 'Sabra02G0131000' => 'sbr', 'Sabra06G0066300' => 'sbr', 'Sabra08G0115500' => 'sbr', 'Sabra09G0023900' => 'sbr', 'Sabra10G0054000' => 'sbr', 'Sabra14G0081500' => 'sbr', 'Sabra16G0147100' => 'sbr', 'SalBow2G2957' => 'sbo', 'SalBow4G3320' => 'sbo', 'SalBow8G1894' => 'sbo', 'Sc07g0007950' => 'sci', 'Sc12g0001360' => 'sci', 'Sc13g0004330' => 'sci', 'Sc20g0005010' => 'sci', 'Sed0000361' => 'sed', 'Sed0001706' => 'sed', 'Sed0002422' => 'sed', 'Sed0004029' => 'sed', 'Sed0004602' => 'sed', 'Sed0004943' => 'sed', 'Sed0008646' => 'sed', 'Sed0023313' => 'sed', 'Sed0024843' => 'sed', 'SEGI_00081' => 'sgi', 'SEGI_00947' => 'sgi', 'SEGI_04046' => 'sgi', 'SEGI_06880' => 'sgi', 'SEGI_09736' => 'sgi', 'SEGI_12741' => 'sgi', 'SEGI_14530' => 'sgi', 'SEGI_20705' => 'sgi', 'SEGI_26088' => 'sgi', 'SEGI_28323' => 'sgi', 'SEGI_33343' => 'sgi', 'SGA_v2.0_scaffold126G33775' => 'sas', 'SGA_v2.0_scaffold2G01337' => 'sas', 'SGA_v2.0_scaffold38G15006' => 'sas', 'SGA_v2.0_scaffold39G15264' => 'sas', 'SGA_v2.0_scaffold453G51880' => 'sas', 'SHI12696' => 'shi', 'SMO367G1096' => 'smo', 'Solyc01g068630.3' => 'sly', 'Solyc05g011880.3' => 'sly', 'Solyc06g076300.3' => 'sly', 'Solyc09g010940.4' => 'sly', 'Solyc09g075890.3' => 'sly', 'Sopen01g030560' => 'spe', 'Sopen05g006630' => 'spe', 'Sopen06g032720' => 'spe', 'Sopen09g005660' => 'spe', 'Sopen09g030690' => 'spe', 'Sp4g14540' => 'spa', 'Sp4g20030' => 'spa', 'Sp5g01320' => 'spa', 'Sp6g21170' => 'spa', 'Sp6g21180' => 'spa', 'Sp6g21190' => 'spa', 'Sp6g40220' => 'spa', 'TAR362G0122' => 'tar', 'TAR362G1338' => 'tar', 'TAR369G0590' => 'tar', 'TAR371G0824' => 'tar', 'TAR622G1429' => 'tar', 'TAR623G0734' => 'tar', 'TAR625G0441' => 'tar', 'TAR629G0976' => 'tar', 'TAR633G1195' => 'tar', 'TAR636G2660' => 'tar', 'THA.LOC104799440' => 'tha', 'THA.LOC104800966' => 'tha', 'THA.LOC104806559' => 'tha', 'THA.LOC104810765' => 'tha', 'THA.LOC104816266' => 'tha', 'THA.LOC104817419' => 'tha', 'THA.LOC104827021' => 'tha', 'Thecc.01G327400' => 'tca', 'Thecc.04G229200' => 'tca', 'Thecc.05G037400' => 'tca', 'Thecc.09G318600' => 'tca', 'Thecc.09G318700' => 'tca', 'Thhalv10006238m.g' => 'esa', 'Thhalv10014321m.g' => 'esa', 'Thhalv10014335m.g' => 'esa', 'Thhalv10015826m.g' => 'esa', 'Thhalv10017107m.g' => 'esa', 'Thhalv10017180m.g' => 'esa', 'Thhalv10029339m.g' => 'esa', 'TPR.G1699' => 'tpr', 'TPR.G23609' => 'tpr', 'TPR.G3081' => 'tpr', 'TPR.G40397' => 'tpr', 'TPR.G5522' => 'tpr', 'TPR.G5618' => 'tpr', 'TPR.G5626' => 'tpr', 'TWI09G1632' => 'twi', 'TWI23G1230' => 'twi', 'TWI53G1064' => 'twi', 'TWI59G0751' => 'twi', 'TWI74G0947' => 'twi', 'TWI77G0337' => 'twi', 'TWI79G1254' => 'twi', 'unitig_0.g2341' => 'ugi', 'unitig_26.g10006' => 'ugi', 'unitig_26.g10008' => 'ugi', 'unitig_26.g9192' => 'ugi', 'vmacro14547' => 'vma', 'vmacro15333' => 'vma', 'vmacro18743' => 'vma', 'vmacro20166' => 'vma', 'VMungo0331G0523' => 'vmu', 'VMungo0331G1202' => 'vmu', 'VMungo0720G1228' => 'vmu', 'VMungo0720G1514' => 'vmu', 'VMungo1080G0169' => 'vmu', 'VMungo1127G1475' => 'vmu', 'VMungo1383G1208' => 'vmu', 'VMungo1383G1698' => 'vmu', 'Zm00001eb012270' => 'zma', 'Zm00001eb054100' => 'zma', 'Zm00001eb063350' => 'zma', 'Zm00001eb328560' => 'zma', 'Zm00001eb342820' => 'zma', 'Zm00001eb362210' => 'zma', 'Zm00001eb397730' => 'zma', 'Zm00001eb399750' => 'zma' ) $gf_id = 'HOM05D000959' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000959' ) $data_identifier = 'HOM05D000959' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 5, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 5, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 10, 'mbi' => (int) 3, 'mco' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 2, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 3, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 11, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399750' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000959', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '622', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p07100' => 'bna', 'A03p11720' => 'bna', 'A05p08300' => 'bna', 'A05p13380' => 'bna', 'A09p54130' => 'bna', 'A10p16690' => 'bna', 'A10p16700' => 'bna', 'A10p33390' => 'bna', 'Aa31LG10G16020' => 'aar', 'Aa31LG1G11810' => 'aar', 'Aa31LG1G11830' => 'aar', 'Aa31LG1G22510' => 'aar', 'Aa31LG5G4890' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5793' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2310' => 'aag', 'Actinidia08499' => 'ach', 'Actinidia11262' => 'ach', 'Actinidia23926' => 'ach', 'Actinidia34420' => 'ach', 'Actinidia36970' => 'ach', 'Ah.02g111220' => 'amhyb', 'Ah.15g097750' => 'amhyb', 'AL4G27500' => 'aly', 'AL6G11470' => 'aly', 'AL8G35950' => 'aly', 'AL8G35960' => 'aly', 'AL8G35970' => 'aly', 'Aqoxy1G00912' => 'aox', 'Aqoxy2G02253' => 'aox', 'Aqoxy2G02411' => 'aox', 'Aqoxy5G00485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BZ66YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K8ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM4FUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6BF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HFV7XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25JBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0YNNV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MAKK6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P70IT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP2Z6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V61LZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YWP64R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3S9AI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7PGHH' => 'arhy', 'AT2G32150' => 'ath', 'AT3G62040' => 'ath', 'AT5G02230' => 'ath', 'AT5G59480' => 'ath', 'AT5G59490' => 'ath', 'ATR0332G060' => 'atr', 'ATR0559G190' => 'atr', 'ATR0693G294' => 'atr', 'Atru.chr3.3975' => 'acertr', 'Atru.chr3.3976' => 'acertr', 'Atru.chr3.3977' => 'acertr', 'Atru.chr4.2498' => 'acertr', 'Atru.chr5.838' => 'acertr', 'Atru.chr8.1990' => 'acertr', 'Atru.chr8.1991' => 'acertr', 'Atru.chr8.1992' => 'acertr', 'AUR62001759' => 'cqu', 'AUR62009545' => 'cqu', 'AUR62010474' => 'cqu', 'AUR62025820' => 'cqu', 'AUR62030422' => 'cqu', 'AUR62033605' => 'cqu', 'AUR62038615' => 'cqu', 'AUR62041347' => 'cqu', 'BcaB01g04574' => 'bca', 'BcaB02g09263' => 'bca', 'BcaB02g10453' => 'bca', 'BcaB05g22513' => 'bca', 'BcaB08g36253' => 'bca', 'BcaB08g36254' => 'bca', 'BcaC01g06519' => 'bca', 'BcaC02g11889' => 'bca', 'BcaC03g14010' => 'bca', 'BcaC03g18439' => 'bca', 'BcaC04g19765' => 'bca', 'BcaC09g48432' => 'bca', 'BcaNung07302' => 'bca', 'BolC2t06040H' => 'bol', 'BolC2t07346H' => 'bol', 'BolC3t13817H' => 'bol', 'BolC4t22625H' => 'bol', 'BolC4t23297H' => 'bol', 'BolC8t51278H' => 'bol', 'BolC9t58050H' => 'bol', 'BolC9t58051H' => 'bol', 'BolC9t60163H' => 'bol', 'BraA02t04712Z' => 'bra', 'BraA02t05791Z' => 'bra', 'BraA03t10483Z' => 'bra', 'BraA05t19795Z' => 'bra', 'BraA05t20276Z' => 'bra', 'BraA09t40827Z' => 'bra', 'BraA10t43750Z' => 'bra', 'BraA10t43751Z' => 'bra', 'BraA10t45370Z' => 'bra', 'C02p00400' => 'bna', 'C02p12460' => 'bna', 'C03p13680' => 'bna', 'C04p10270' => 'bna', 'C04p17500' => 'bna', 'C08p37010' => 'bna', 'C09p51880' => 'bna', 'C09p51890' => 'bna', 'C09p74300' => 'bna', 'CAN.G179.26' => 'can', 'CAN.G3384.1' => 'can', 'CAN.G394.68' => 'can', 'CAN.G907.13' => 'can', 'CANSAT11G0012' => 'cansat', 'CANSAT25G1586' => 'cansat', 'CANSAT35G0735' => 'cansat', 'CANSAT54G0556' => 'cansat', 'CANSAT64G0356' => 'cansat', 'CANSAT78G2042' => 'cansat', 'CARHR125920' => 'chi', 'CARHR131910' => 'chi', 'CARHR172390' => 'chi', 'CARHR211140' => 'chi', 'CARHR285850' => 'chi', 'CARHR285860' => 'chi', 'Carub.0004s1347' => 'cru', 'Carub.0004s1960' => 'cru', 'Carub.0005s2880' => 'cru', 'Carub.0006s0107' => 'cru', 'Carub.0008s2015' => 'cru', 'Carub.0008s2016' => 'cru', 'Carub.0008s2017' => 'cru', 'Ca_01315_v3' => 'car', 'Ca_05063_v3' => 'car', 'Ca_10231_v3' => 'car', 'Ca_10913_v3' => 'car', 'Ca_19156_v3' => 'car', 'Ca_23644_v3' => 'car', 'Ca_26735_v3' => 'car', 'Cc01_g13130' => 'ccan', 'Cc02_g21690' => 'ccan', 'Cc03_g03600' => 'ccan', 'Cc06_g02510' => 'ccan', 'CDE02G1265' => 'cde', 'CDE05G0415' => 'cde', 'CDE08G1082' => 'cde', 'Cfa005780' => 'cfa', 'Cfa011522' => 'cfa', 'Cfa011523' => 'cfa', 'Cfa015627' => 'cfa', 'Cfa017359' => 'cfa', 'Ciclev10005687m.g' => 'ccl', 'Ciclev10012173m.g' => 'ccl', 'Ciclev10021621m.g' => 'ccl', 'Ciclev10028968m.g' => 'ccl', 'Ciclev10029907m.g' => 'ccl', 'CiPaw.01G164800' => 'cil', 'CiPaw.07G083700' => 'cil', 'CiPaw.07G127000' => 'cil', 'CiPaw.07G136900' => 'cil', 'CiPaw.08G081700' => 'cil', 'CiPaw.09G194600' => 'cil', 'CiPaw.10G146500' => 'cil', 'CiPaw.13G091500' => 'cil', 'CiPaw.13G091600' => 'cil', 'ClCG00G003390' => 'cla', 'ClCG01G007220' => 'cla', 'ClCG03G001370' => 'cla', 'ClCG04G008100' => 'cla', 'ClCG06G006110' => 'cla', 'ClCG06G006130' => 'cla', 'ClCG10G021210' => 'cla', 'COL.COLO4_07648' => 'col', 'COL.COLO4_07650' => 'col', 'COL.COLO4_07651' => 'col', 'COL.COLO4_14780' => 'col', 'COL.COLO4_18546' => 'col', 'COL.COLO4_18547' => 'col', 'COL.COLO4_23103' => 'col', 'COL.COLO4_30419' => 'col', 'COL.COLO4_34232' => 'col', 'Cpa.g.sc169.20' => 'cpa', 'Cpa.g.sc57.45' => 'cpa', 'Cpa.g.sc58.124' => 'cpa', 'Cpa.g.sc58.125' => 'cpa', 'Cpa.g.sc81.118' => 'cpa', 'Cpa.g.sc81.119' => 'cpa', 'Cre12.g524700' => 'cre', 'CsaV3_1G034430' => 'csa', 'CsaV3_1G034440' => 'csa', 'CsaV3_1G034450' => 'csa', 'CsaV3_3G034830' => 'csa', 'CsaV3_4G025090' => 'csa', 'CsaV3_5G018660' => 'csa', 'CsaV3_6G038160' => 'csa', 'CSS0003447' => 'camsi', 'CSS0017840' => 'camsi', 'CSS0019260' => 'camsi', 'CSS0040375' => 'camsi', 'CSS0042533' => 'camsi', 'DCAR_005960' => 'dca', 'DCAR_012104' => 'dca', 'DCAR_012105' => 'dca', 'DCAR_012293' => 'dca', 'DCAR_015632' => 'dca', 'DCAR_024602' => 'dca', 'DCAR_028752' => 'dca', 'Dinv06261' => 'din', 'Dinv13982' => 'din', 'Dinv17029' => 'din', 'Dinv18463' => 'din', 'Dinv33181' => 'din', 'Dinv35585' => 'din', 'Dinv37161' => 'din', 'Dinv42977' => 'din', 'Dinv43122' => 'din', 'Dinv44517' => 'din', 'Duzib093G0256' => 'dzi', 'Duzib106G1254' => 'dzi', 'Duzib128G1789' => 'dzi', 'Duzib133G0633' => 'dzi', 'Duzib138G0510' => 'dzi', 'Duzib150G1084' => 'dzi', 'Duzib168G0488' => 'dzi', 'Duzib168G1523' => 'dzi', 'Duzib170G0133' => 'dzi', 'ECA234G1433' => 'eca', 'ECA236G1432' => 'eca', 'ECA236G2256' => 'eca', 'ECA236G2365' => 'eca', 'ECA236G4830' => 'eca', 'ECA248G1505' => 'eca', 'EL10Ac3g06431' => 'bvu', 'EL10Ac5g12577' => 'bvu', 'EL10Ac6g13533' => 'bvu', 'EL10Ac7g16045' => 'bvu', 'Eucgr.A01281' => 'egr', 'Eucgr.B02326' => 'egr', 'Eucgr.H03532' => 'egr', 'Eucgr.K00553' => 'egr', 'Eucgr.K03116' => 'egr', 'FAN02G3963' => 'fan', 'FAN05G0438' => 'fan', 'FAN09G2434' => 'fan', 'FAN12G3984' => 'fan', 'FAN14G0798' => 'fan', 'FAN17G0652' => 'fan', 'FAN19G1988' => 'fan', 'FAN22G0632' => 'fan', 'FAN23G0387' => 'fan', 'FAN26G1323' => 'fan', 'FAN28G0666' => 'fan', 'FvH4_1g26080' => 'fve', 'FvH4_3g36780' => 'fve', 'FvH4_4g15270' => 'fve', 'FvH4_6g13490' => 'fve', 'Glyma.01G098700' => 'gma', 'Glyma.03G065900' => 'gma', 'Glyma.03G073754' => 'gma', 'Glyma.03G073758' => 'gma', 'Glyma.03G083200' => 'gma', 'Glyma.03G225500' => 'gma', 'Glyma.05G037766' => 'gma', 'Glyma.07G133500' => 'gma', 'Glyma.10G139400' => 'gma', 'Glyma.10G248900' => 'gma', 'Glyma.11G137800' => 'gma', 'Glyma.12G061300' => 'gma', 'Glyma.13G337900' => 'gma', 'Glyma.15G036600' => 'gma', 'Glyma.18G182800' => 'gma', 'Glyma.19G222500' => 'gma', 'Glyma.20G144800' => 'gma', 'Gohir.A01G222000' => 'ghi', 'Gohir.A03G044000' => 'ghi', 'Gohir.A03G044100' => 'ghi', 'Gohir.A04G083100' => 'ghi', 'Gohir.A07G127200' => 'ghi', 'Gohir.A07G132400' => 'ghi', 'Gohir.A08G000700' => 'ghi', 'Gohir.A11G327300' => 'ghi', 'Gohir.D01G211500' => 'ghi', 'Gohir.D03G123400' => 'ghi', 'Gohir.D03G123500' => 'ghi', 'Gohir.D04G121800' => 'ghi', 'Gohir.D07G131500' => 'ghi', 'Gohir.D07G136600' => 'ghi', 'Gohir.D08G011600' => 'ghi', 'Gohir.D11G346200' => 'ghi', 'Gorai.001G142800' => 'gra', 'Gorai.001G148700' => 'gra', 'Gorai.002G257300' => 'gra', 'Gorai.003G130000' => 'gra', 'Gorai.003G130100' => 'gra', 'Gorai.004G005300' => 'gra', 'Gorai.007G376500' => 'gra', 'Gorai.012G104700' => 'gra', 'GSVIVG01017946001' => 'vvi', 'GSVIVG01024928001' => 'vvi', 'GSVIVG01028227001' => 'vvi', 'GSVIVG01034151001' => 'vvi', 'HanXRQChr05g0135031' => 'han', 'HanXRQChr05g0135041' => 'han', 'HanXRQChr05g0140021' => 'han', 'HanXRQChr06g0178981' => 'han', 'HanXRQChr07g0188251' => 'han', 'HanXRQChr08g0235311' => 'han', 'HanXRQChr09g0271011' => 'han', 'HanXRQChr10g0293321' => 'han', 'HanXRQChr13g0388171' => 'han', 'Haze_00916' => 'cav', 'Haze_05063' => 'cav', 'Haze_20814' => 'cav', 'Haze_24128' => 'cav', 'Hma1.2p1_0745F.1_g212010' => 'hma', 'Hma1.2p1_0757F.1_g213260' => 'hma', 'Hma1.2p1_0936F.1_g238840' => 'hma', 'Hma1.2p1_1735F.1_g299890' => 'hma', 'Hma1.2p1_1861F.1_g305685' => 'hma', 'HPP92_003397' => 'vpl', 'HPP92_012597' => 'vpl', 'HPP92_015520' => 'vpl', 'HPP92_015539' => 'vpl', 'HPP92_020373' => 'vpl', 'Hund04938' => 'sun', 'Hund10677' => 'sun', 'Hund11033' => 'sun', 'Hund12155' => 'sun', 'Lalb_Chr01g0022551' => 'lal', 'Lalb_Chr03g0042341' => 'lal', 'Lalb_Chr07g0192931' => 'lal', 'Lalb_Chr12g0209551' => 'lal', 'Lalb_Chr19g0125251' => 'lal', 'Lalb_Chr19g0137891' => 'lal', 'Lalb_Chr21g0304641' => 'lal', 'Lalb_Chr21g0309881' => 'lal', 'Lj1A5T12' => 'lonja', 'Lj1C148G10' => 'lonja', 'Lj2A93T83' => 'lonja', 'Lj3A738G68' => 'lonja', 'Lj3C966T1' => 'lonja', 'Lj3g0018958' => 'lja', 'Lj3g0021831' => 'lja', 'Lj3g0025443' => 'lja', 'Lj4g0026809' => 'lja', 'Lj5g0012558' => 'lja', 'Lj5g0021586' => 'lja', 'Lsat_1_v5_gn_5_156840' => 'lsa', 'Lsat_1_v5_gn_8_73460' => 'lsa', 'Lsat_1_v5_gn_8_73481' => 'lsa', 'Lsat_1_v5_gn_9_31601' => 'lsa', 'Lsat_1_v5_gn_9_77320' => 'lsa', 'Manes.01G171300' => 'mes', 'Manes.01G171400' => 'mes', 'Manes.01G236100' => 'mes', 'Manes.02G130500' => 'mes', 'Manes.02G130600' => 'mes', 'Manes.03G180200' => 'mes', 'Manes.05G007000' => 'mes', 'Manes.08G084400' => 'mes', 'Manes.09G092600' => 'mes', 'Manes.15G027900' => 'mes', 'MBI04_g40948_MAGBIO' => 'mbi', 'MBI14_g12123_MAGBIO' => 'mbi', 'MBI18_g28915_MAGBIO' => 'mbi', 'MCO09G053' => 'mco', 'MCO11G782' => 'mco', 'MCO15G215' => 'mco', 'MD03G1088500' => 'mdo', 'MD03G1088600' => 'mdo', 'MD04G1130800' => 'mdo', 'MD09G1291700' => 'mdo', 'MD11G1097500' => 'mdo', 'MD11G1097600' => 'mdo', 'MD12G1143900' => 'mdo', 'MD13G1191400' => 'mdo', 'MD16G1191500' => 'mdo', 'Medtr1g085570' => 'mtr', 'Medtr1g104610' => 'mtr', 'Medtr2g097520' => 'mtr', 'Medtr4g021800' => 'mtr', 'Medtr4g021825' => 'mtr', 'Medtr4g064270' => 'mtr', 'Medtr4g064380' => 'mtr', 'Medtr7g062150' => 'mtr', 'MELO3C003138.2' => 'cme', 'MELO3C005187.2' => 'cme', 'MELO3C009252.2' => 'cme', 'MELO3C014481.2' => 'cme', 'MELO3C020616.2' => 'cme', 'MELO3C020617.2' => 'cme', 'MELO3C020618.2' => 'cme', 'Migut.G00328' => 'egut', 'Migut.J00320' => 'egut', 'Migut.L01000' => 'egut', 'Migut.L01953' => 'egut', 'MSTRG.10253' => 'ama', 'MSTRG.19077' => 'ama', 'MSTRG.26780' => 'ama', 'MSTRG.4023' => 'ama', 'MSTRG.5655' => 'ama', 'MSTRG.9992' => 'ama', 'Nitab4.5_0000043g0310' => 'nta', 'Nitab4.5_0000463g0080' => 'nta', 'Nitab4.5_0000705g0170' => 'nta', 'Nitab4.5_0001326g0060' => 'nta', 'Nitab4.5_0001628g0030' => 'nta', 'Nitab4.5_0002103g0110' => 'nta', 'Nitab4.5_0002946g0030' => 'nta', 'Nitab4.5_0004639g0030' => 'nta', 'Nn2g11149' => 'nnu', 'Nn2g13389' => 'nnu', 'Nn4g25326' => 'nnu', 'Nn4g26290' => 'nnu', 'Nn5g29865' => 'nnu', 'Oeu004163.1' => 'oeu', 'Oeu006901.1' => 'oeu', 'Oeu010096.1' => 'oeu', 'Oeu024340.1' => 'oeu', 'Oeu048369.1' => 'oeu', 'Os01g0973000' => 'osa', 'Os03g0273800' => 'osa', 'Os03g0701200' => 'osa', 'Os03g0834050' => 'osa', 'Os07g0634400' => 'osa', 'Peaxi162Scf00092g01414' => 'pax', 'Peaxi162Scf00165g00818' => 'pax', 'Peaxi162Scf00309g00516' => 'pax', 'Peaxi162Scf00774g00218' => 'pax', 'PGR004G1824' => 'pgr', 'PGR004G2606' => 'pgr', 'PGR031G2716' => 'pgr', 'PGR102G2460' => 'pgr', 'PGR142G2599' => 'pgr', 'PGSC0003DMG400000843' => 'stu', 'PGSC0003DMG400008829' => 'stu', 'PGSC0003DMG400030418' => 'stu', 'PGSC0003DMG400031834' => 'stu', 'PGSC0003DMG401028300' => 'stu', 'PGSC0003DMG402028300' => 'stu', 'Phvul.001G219300' => 'pvu', 'Phvul.007G056000' => 'pvu', 'Phvul.007G208000' => 'pvu', 'Phvul.008G119500' => 'pvu', 'Phvul.010G011200' => 'pvu', 'Phvul.010G014800' => 'pvu', 'Phvul.011G062900' => 'pvu', 'Phvul.L007043' => 'pvu', 'Potri.001G242300' => 'ptr', 'Potri.002G185300' => 'ptr', 'Potri.006G086900' => 'ptr', 'Potri.008G151700' => 'ptr', 'Potri.009G033500' => 'ptr', 'Potri.010G089300' => 'ptr', 'Potri.014G110800' => 'ptr', 'Pp3c27_8130' => 'ppa', 'Pp3c6_27410' => 'ppa', 'PRCOL_00001659' => 'pco', 'PRCOL_00001927' => 'pco', 'PRCOL_00003649' => 'pco', 'Prupe.1G011600' => 'ppe', 'Prupe.3G000800' => 'ppe', 'Prupe.3G001100' => 'ppe', 'Prupe.6G072700' => 'ppe', 'Prupe.6G072800' => 'ppe', 'Prupe.6G257300' => 'ppe', 'Prupe.8G033000' => 'ppe', 'Psat0s2633g0080' => 'psa', 'Psat0s3396g0080' => 'psa', 'Psat0s3396g0200' => 'psa', 'Psat3g139080' => 'psa', 'Psat5g285080' => 'psa', 'Psat6g157760' => 'psa', 'Psat6g208440' => 'psa', 'Psat7g215320' => 'psa', 'Psat7g215400' => 'psa', 'Psat7g235600' => 'psa', 'Psat7g235760' => 'psa', 'PSO063G4603' => 'pso', 'PSO210G0182' => 'pso', 'PSO210G0196' => 'pso', 'PSO339G0394' => 'pso', 'PSO339G4127' => 'pso', 'PSO513G0064' => 'pso', 'PSO761G0079' => 'pso', 'QL01p031003' => 'qlo', 'QL01p031078' => 'qlo', 'QL06p003004' => 'qlo', 'QL07p048731' => 'qlo', 'QL09p037427' => 'qlo', 'RcHm_v2.0_Chr3g0466361' => 'rch', 'RcHm_v2.0_Chr3g0485571' => 'rch', 'RcHm_v2.0_Chr4g0416551' => 'rch', 'RcHm_v2.0_Chr5g0065831' => 'rch', 'Rhsim01G0230500' => 'rsi', 'Rhsim05G0194000' => 'rsi', 'Rhsim08G0250400' => 'rsi', 'Sabra02G0131000' => 'sbr', 'Sabra06G0066300' => 'sbr', 'Sabra08G0115500' => 'sbr', 'Sabra09G0023900' => 'sbr', 'Sabra10G0054000' => 'sbr', 'Sabra14G0081500' => 'sbr', 'Sabra16G0147100' => 'sbr', 'SalBow2G2957' => 'sbo', 'SalBow4G3320' => 'sbo', 'SalBow8G1894' => 'sbo', 'Sc07g0007950' => 'sci', 'Sc12g0001360' => 'sci', 'Sc13g0004330' => 'sci', 'Sc20g0005010' => 'sci', 'Sed0000361' => 'sed', 'Sed0001706' => 'sed', 'Sed0002422' => 'sed', 'Sed0004029' => 'sed', 'Sed0004602' => 'sed', 'Sed0004943' => 'sed', 'Sed0008646' => 'sed', 'Sed0023313' => 'sed', 'Sed0024843' => 'sed', 'SEGI_00081' => 'sgi', 'SEGI_00947' => 'sgi', 'SEGI_04046' => 'sgi', 'SEGI_06880' => 'sgi', 'SEGI_09736' => 'sgi', 'SEGI_12741' => 'sgi', 'SEGI_14530' => 'sgi', 'SEGI_20705' => 'sgi', 'SEGI_26088' => 'sgi', 'SEGI_28323' => 'sgi', 'SEGI_33343' => 'sgi', 'SGA_v2.0_scaffold126G33775' => 'sas', 'SGA_v2.0_scaffold2G01337' => 'sas', 'SGA_v2.0_scaffold38G15006' => 'sas', 'SGA_v2.0_scaffold39G15264' => 'sas', 'SGA_v2.0_scaffold453G51880' => 'sas', 'SHI12696' => 'shi', 'SMO367G1096' => 'smo', 'Solyc01g068630.3' => 'sly', 'Solyc05g011880.3' => 'sly', 'Solyc06g076300.3' => 'sly', 'Solyc09g010940.4' => 'sly', 'Solyc09g075890.3' => 'sly', 'Sopen01g030560' => 'spe', 'Sopen05g006630' => 'spe', 'Sopen06g032720' => 'spe', 'Sopen09g005660' => 'spe', 'Sopen09g030690' => 'spe', 'Sp4g14540' => 'spa', 'Sp4g20030' => 'spa', 'Sp5g01320' => 'spa', 'Sp6g21170' => 'spa', 'Sp6g21180' => 'spa', 'Sp6g21190' => 'spa', 'Sp6g40220' => 'spa', 'TAR362G0122' => 'tar', 'TAR362G1338' => 'tar', 'TAR369G0590' => 'tar', 'TAR371G0824' => 'tar', 'TAR622G1429' => 'tar', 'TAR623G0734' => 'tar', 'TAR625G0441' => 'tar', 'TAR629G0976' => 'tar', 'TAR633G1195' => 'tar', 'TAR636G2660' => 'tar', 'THA.LOC104799440' => 'tha', 'THA.LOC104800966' => 'tha', 'THA.LOC104806559' => 'tha', 'THA.LOC104810765' => 'tha', 'THA.LOC104816266' => 'tha', 'THA.LOC104817419' => 'tha', 'THA.LOC104827021' => 'tha', 'Thecc.01G327400' => 'tca', 'Thecc.04G229200' => 'tca', 'Thecc.05G037400' => 'tca', 'Thecc.09G318600' => 'tca', 'Thecc.09G318700' => 'tca', 'Thhalv10006238m.g' => 'esa', 'Thhalv10014321m.g' => 'esa', 'Thhalv10014335m.g' => 'esa', 'Thhalv10015826m.g' => 'esa', 'Thhalv10017107m.g' => 'esa', 'Thhalv10017180m.g' => 'esa', 'Thhalv10029339m.g' => 'esa', 'TPR.G1699' => 'tpr', 'TPR.G23609' => 'tpr', 'TPR.G3081' => 'tpr', 'TPR.G40397' => 'tpr', 'TPR.G5522' => 'tpr', 'TPR.G5618' => 'tpr', 'TPR.G5626' => 'tpr', 'TWI09G1632' => 'twi', 'TWI23G1230' => 'twi', 'TWI53G1064' => 'twi', 'TWI59G0751' => 'twi', 'TWI74G0947' => 'twi', 'TWI77G0337' => 'twi', 'TWI79G1254' => 'twi', 'unitig_0.g2341' => 'ugi', 'unitig_26.g10006' => 'ugi', 'unitig_26.g10008' => 'ugi', 'unitig_26.g9192' => 'ugi', 'vmacro14547' => 'vma', 'vmacro15333' => 'vma', 'vmacro18743' => 'vma', 'vmacro20166' => 'vma', 'VMungo0331G0523' => 'vmu', 'VMungo0331G1202' => 'vmu', 'VMungo0720G1228' => 'vmu', 'VMungo0720G1514' => 'vmu', 'VMungo1080G0169' => 'vmu', 'VMungo1127G1475' => 'vmu', 'VMungo1383G1208' => 'vmu', 'VMungo1383G1698' => 'vmu', 'Zm00001eb012270' => 'zma', 'Zm00001eb054100' => 'zma', 'Zm00001eb063350' => 'zma', 'Zm00001eb328560' => 'zma', 'Zm00001eb342820' => 'zma', 'Zm00001eb362210' => 'zma', 'Zm00001eb397730' => 'zma', 'Zm00001eb399750' => 'zma' ), 'gf_id' => 'HOM05D000959', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000959' ), 'data_identifier' => 'HOM05D000959', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000959', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '622', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p07100' => 'bna', 'A03p11720' => 'bna', 'A05p08300' => 'bna', 'A05p13380' => 'bna', 'A09p54130' => 'bna', 'A10p16690' => 'bna', 'A10p16700' => 'bna', 'A10p33390' => 'bna', 'Aa31LG10G16020' => 'aar', 'Aa31LG1G11810' => 'aar', 'Aa31LG1G11830' => 'aar', 'Aa31LG1G22510' => 'aar', 'Aa31LG5G4890' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5793' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2310' => 'aag', 'Actinidia08499' => 'ach', 'Actinidia11262' => 'ach', 'Actinidia23926' => 'ach', 'Actinidia34420' => 'ach', 'Actinidia36970' => 'ach', 'Ah.02g111220' => 'amhyb', 'Ah.15g097750' => 'amhyb', 'AL4G27500' => 'aly', 'AL6G11470' => 'aly', 'AL8G35950' => 'aly', 'AL8G35960' => 'aly', 'AL8G35970' => 'aly', 'Aqoxy1G00912' => 'aox', 'Aqoxy2G02253' => 'aox', 'Aqoxy2G02411' => 'aox', 'Aqoxy5G00485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BZ66YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K8ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM4FUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6BF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HFV7XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25JBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0YNNV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MAKK6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P70IT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP2Z6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V61LZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YWP64R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3S9AI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7PGHH' => 'arhy', 'AT2G32150' => 'ath', 'AT3G62040' => 'ath', 'AT5G02230' => 'ath', 'AT5G59480' => 'ath', 'AT5G59490' => 'ath', 'ATR0332G060' => 'atr', 'ATR0559G190' => 'atr', 'ATR0693G294' => 'atr', 'Atru.chr3.3975' => 'acertr', 'Atru.chr3.3976' => 'acertr', 'Atru.chr3.3977' => 'acertr', 'Atru.chr4.2498' => 'acertr', 'Atru.chr5.838' => 'acertr', 'Atru.chr8.1990' => 'acertr', 'Atru.chr8.1991' => 'acertr', 'Atru.chr8.1992' => 'acertr', 'AUR62001759' => 'cqu', 'AUR62009545' => 'cqu', 'AUR62010474' => 'cqu', 'AUR62025820' => 'cqu', 'AUR62030422' => 'cqu', 'AUR62033605' => 'cqu', 'AUR62038615' => 'cqu', 'AUR62041347' => 'cqu', 'BcaB01g04574' => 'bca', 'BcaB02g09263' => 'bca', 'BcaB02g10453' => 'bca', 'BcaB05g22513' => 'bca', 'BcaB08g36253' => 'bca', 'BcaB08g36254' => 'bca', 'BcaC01g06519' => 'bca', 'BcaC02g11889' => 'bca', 'BcaC03g14010' => 'bca', 'BcaC03g18439' => 'bca', 'BcaC04g19765' => 'bca', 'BcaC09g48432' => 'bca', 'BcaNung07302' => 'bca', 'BolC2t06040H' => 'bol', 'BolC2t07346H' => 'bol', 'BolC3t13817H' => 'bol', 'BolC4t22625H' => 'bol', 'BolC4t23297H' => 'bol', 'BolC8t51278H' => 'bol', 'BolC9t58050H' => 'bol', 'BolC9t58051H' => 'bol', 'BolC9t60163H' => 'bol', 'BraA02t04712Z' => 'bra', 'BraA02t05791Z' => 'bra', 'BraA03t10483Z' => 'bra', 'BraA05t19795Z' => 'bra', 'BraA05t20276Z' => 'bra', 'BraA09t40827Z' => 'bra', 'BraA10t43750Z' => 'bra', 'BraA10t43751Z' => 'bra', 'BraA10t45370Z' => 'bra', 'C02p00400' => 'bna', 'C02p12460' => 'bna', 'C03p13680' => 'bna', 'C04p10270' => 'bna', 'C04p17500' => 'bna', 'C08p37010' => 'bna', 'C09p51880' => 'bna', 'C09p51890' => 'bna', 'C09p74300' => 'bna', 'CAN.G179.26' => 'can', 'CAN.G3384.1' => 'can', 'CAN.G394.68' => 'can', 'CAN.G907.13' => 'can', 'CANSAT11G0012' => 'cansat', 'CANSAT25G1586' => 'cansat', 'CANSAT35G0735' => 'cansat', 'CANSAT54G0556' => 'cansat', 'CANSAT64G0356' => 'cansat', 'CANSAT78G2042' => 'cansat', 'CARHR125920' => 'chi', 'CARHR131910' => 'chi', 'CARHR172390' => 'chi', 'CARHR211140' => 'chi', 'CARHR285850' => 'chi', 'CARHR285860' => 'chi', 'Carub.0004s1347' => 'cru', 'Carub.0004s1960' => 'cru', 'Carub.0005s2880' => 'cru', 'Carub.0006s0107' => 'cru', 'Carub.0008s2015' => 'cru', 'Carub.0008s2016' => 'cru', 'Carub.0008s2017' => 'cru', 'Ca_01315_v3' => 'car', 'Ca_05063_v3' => 'car', 'Ca_10231_v3' => 'car', 'Ca_10913_v3' => 'car', 'Ca_19156_v3' => 'car', 'Ca_23644_v3' => 'car', 'Ca_26735_v3' => 'car', 'Cc01_g13130' => 'ccan', 'Cc02_g21690' => 'ccan', 'Cc03_g03600' => 'ccan', 'Cc06_g02510' => 'ccan', 'CDE02G1265' => 'cde', 'CDE05G0415' => 'cde', 'CDE08G1082' => 'cde', 'Cfa005780' => 'cfa', 'Cfa011522' => 'cfa', 'Cfa011523' => 'cfa', 'Cfa015627' => 'cfa', 'Cfa017359' => 'cfa', 'Ciclev10005687m.g' => 'ccl', 'Ciclev10012173m.g' => 'ccl', 'Ciclev10021621m.g' => 'ccl', 'Ciclev10028968m.g' => 'ccl', 'Ciclev10029907m.g' => 'ccl', 'CiPaw.01G164800' => 'cil', 'CiPaw.07G083700' => 'cil', 'CiPaw.07G127000' => 'cil', 'CiPaw.07G136900' => 'cil', 'CiPaw.08G081700' => 'cil', 'CiPaw.09G194600' => 'cil', 'CiPaw.10G146500' => 'cil', 'CiPaw.13G091500' => 'cil', 'CiPaw.13G091600' => 'cil', 'ClCG00G003390' => 'cla', 'ClCG01G007220' => 'cla', 'ClCG03G001370' => 'cla', 'ClCG04G008100' => 'cla', 'ClCG06G006110' => 'cla', 'ClCG06G006130' => 'cla', 'ClCG10G021210' => 'cla', 'COL.COLO4_07648' => 'col', 'COL.COLO4_07650' => 'col', 'COL.COLO4_07651' => 'col', 'COL.COLO4_14780' => 'col', 'COL.COLO4_18546' => 'col', 'COL.COLO4_18547' => 'col', 'COL.COLO4_23103' => 'col', 'COL.COLO4_30419' => 'col', 'COL.COLO4_34232' => 'col', 'Cpa.g.sc169.20' => 'cpa', 'Cpa.g.sc57.45' => 'cpa', 'Cpa.g.sc58.124' => 'cpa', 'Cpa.g.sc58.125' => 'cpa', 'Cpa.g.sc81.118' => 'cpa', 'Cpa.g.sc81.119' => 'cpa', 'Cre12.g524700' => 'cre', 'CsaV3_1G034430' => 'csa', 'CsaV3_1G034440' => 'csa', 'CsaV3_1G034450' => 'csa', 'CsaV3_3G034830' => 'csa', 'CsaV3_4G025090' => 'csa', 'CsaV3_5G018660' => 'csa', 'CsaV3_6G038160' => 'csa', 'CSS0003447' => 'camsi', 'CSS0017840' => 'camsi', 'CSS0019260' => 'camsi', 'CSS0040375' => 'camsi', 'CSS0042533' => 'camsi', 'DCAR_005960' => 'dca', 'DCAR_012104' => 'dca', 'DCAR_012105' => 'dca', 'DCAR_012293' => 'dca', 'DCAR_015632' => 'dca', 'DCAR_024602' => 'dca', 'DCAR_028752' => 'dca', 'Dinv06261' => 'din', 'Dinv13982' => 'din', 'Dinv17029' => 'din', 'Dinv18463' => 'din', 'Dinv33181' => 'din', 'Dinv35585' => 'din', 'Dinv37161' => 'din', 'Dinv42977' => 'din', 'Dinv43122' => 'din', 'Dinv44517' => 'din', 'Duzib093G0256' => 'dzi', 'Duzib106G1254' => 'dzi', 'Duzib128G1789' => 'dzi', 'Duzib133G0633' => 'dzi', 'Duzib138G0510' => 'dzi', 'Duzib150G1084' => 'dzi', 'Duzib168G0488' => 'dzi', 'Duzib168G1523' => 'dzi', 'Duzib170G0133' => 'dzi', 'ECA234G1433' => 'eca', 'ECA236G1432' => 'eca', 'ECA236G2256' => 'eca', 'ECA236G2365' => 'eca', 'ECA236G4830' => 'eca', 'ECA248G1505' => 'eca', 'EL10Ac3g06431' => 'bvu', 'EL10Ac5g12577' => 'bvu', 'EL10Ac6g13533' => 'bvu', 'EL10Ac7g16045' => 'bvu', 'Eucgr.A01281' => 'egr', 'Eucgr.B02326' => 'egr', 'Eucgr.H03532' => 'egr', 'Eucgr.K00553' => 'egr', 'Eucgr.K03116' => 'egr', 'FAN02G3963' => 'fan', 'FAN05G0438' => 'fan', 'FAN09G2434' => 'fan', 'FAN12G3984' => 'fan', 'FAN14G0798' => 'fan', 'FAN17G0652' => 'fan', 'FAN19G1988' => 'fan', 'FAN22G0632' => 'fan', 'FAN23G0387' => 'fan', 'FAN26G1323' => 'fan', 'FAN28G0666' => 'fan', 'FvH4_1g26080' => 'fve', 'FvH4_3g36780' => 'fve', 'FvH4_4g15270' => 'fve', 'FvH4_6g13490' => 'fve', 'Glyma.01G098700' => 'gma', 'Glyma.03G065900' => 'gma', 'Glyma.03G073754' => 'gma', 'Glyma.03G073758' => 'gma', 'Glyma.03G083200' => 'gma', 'Glyma.03G225500' => 'gma', 'Glyma.05G037766' => 'gma', 'Glyma.07G133500' => 'gma', 'Glyma.10G139400' => 'gma', 'Glyma.10G248900' => 'gma', 'Glyma.11G137800' => 'gma', 'Glyma.12G061300' => 'gma', 'Glyma.13G337900' => 'gma', 'Glyma.15G036600' => 'gma', 'Glyma.18G182800' => 'gma', 'Glyma.19G222500' => 'gma', 'Glyma.20G144800' => 'gma', 'Gohir.A01G222000' => 'ghi', 'Gohir.A03G044000' => 'ghi', 'Gohir.A03G044100' => 'ghi', 'Gohir.A04G083100' => 'ghi', 'Gohir.A07G127200' => 'ghi', 'Gohir.A07G132400' => 'ghi', 'Gohir.A08G000700' => 'ghi', 'Gohir.A11G327300' => 'ghi', 'Gohir.D01G211500' => 'ghi', 'Gohir.D03G123400' => 'ghi', 'Gohir.D03G123500' => 'ghi', 'Gohir.D04G121800' => 'ghi', 'Gohir.D07G131500' => 'ghi', 'Gohir.D07G136600' => 'ghi', 'Gohir.D08G011600' => 'ghi', 'Gohir.D11G346200' => 'ghi', 'Gorai.001G142800' => 'gra', 'Gorai.001G148700' => 'gra', 'Gorai.002G257300' => 'gra', 'Gorai.003G130000' => 'gra', 'Gorai.003G130100' => 'gra', 'Gorai.004G005300' => 'gra', 'Gorai.007G376500' => 'gra', 'Gorai.012G104700' => 'gra', 'GSVIVG01017946001' => 'vvi', 'GSVIVG01024928001' => 'vvi', 'GSVIVG01028227001' => 'vvi', 'GSVIVG01034151001' => 'vvi', 'HanXRQChr05g0135031' => 'han', 'HanXRQChr05g0135041' => 'han', 'HanXRQChr05g0140021' => 'han', 'HanXRQChr06g0178981' => 'han', 'HanXRQChr07g0188251' => 'han', 'HanXRQChr08g0235311' => 'han', 'HanXRQChr09g0271011' => 'han', 'HanXRQChr10g0293321' => 'han', 'HanXRQChr13g0388171' => 'han', 'Haze_00916' => 'cav', 'Haze_05063' => 'cav', 'Haze_20814' => 'cav', 'Haze_24128' => 'cav', 'Hma1.2p1_0745F.1_g212010' => 'hma', 'Hma1.2p1_0757F.1_g213260' => 'hma', 'Hma1.2p1_0936F.1_g238840' => 'hma', 'Hma1.2p1_1735F.1_g299890' => 'hma', 'Hma1.2p1_1861F.1_g305685' => 'hma', 'HPP92_003397' => 'vpl', 'HPP92_012597' => 'vpl', 'HPP92_015520' => 'vpl', 'HPP92_015539' => 'vpl', 'HPP92_020373' => 'vpl', 'Hund04938' => 'sun', 'Hund10677' => 'sun', 'Hund11033' => 'sun', 'Hund12155' => 'sun', 'Lalb_Chr01g0022551' => 'lal', 'Lalb_Chr03g0042341' => 'lal', 'Lalb_Chr07g0192931' => 'lal', 'Lalb_Chr12g0209551' => 'lal', 'Lalb_Chr19g0125251' => 'lal', 'Lalb_Chr19g0137891' => 'lal', 'Lalb_Chr21g0304641' => 'lal', 'Lalb_Chr21g0309881' => 'lal', 'Lj1A5T12' => 'lonja', 'Lj1C148G10' => 'lonja', 'Lj2A93T83' => 'lonja', 'Lj3A738G68' => 'lonja', 'Lj3C966T1' => 'lonja', 'Lj3g0018958' => 'lja', 'Lj3g0021831' => 'lja', 'Lj3g0025443' => 'lja', 'Lj4g0026809' => 'lja', 'Lj5g0012558' => 'lja', 'Lj5g0021586' => 'lja', 'Lsat_1_v5_gn_5_156840' => 'lsa', 'Lsat_1_v5_gn_8_73460' => 'lsa', 'Lsat_1_v5_gn_8_73481' => 'lsa', 'Lsat_1_v5_gn_9_31601' => 'lsa', 'Lsat_1_v5_gn_9_77320' => 'lsa', 'Manes.01G171300' => 'mes', 'Manes.01G171400' => 'mes', 'Manes.01G236100' => 'mes', 'Manes.02G130500' => 'mes', 'Manes.02G130600' => 'mes', 'Manes.03G180200' => 'mes', 'Manes.05G007000' => 'mes', 'Manes.08G084400' => 'mes', 'Manes.09G092600' => 'mes', 'Manes.15G027900' => 'mes', 'MBI04_g40948_MAGBIO' => 'mbi', 'MBI14_g12123_MAGBIO' => 'mbi', 'MBI18_g28915_MAGBIO' => 'mbi', 'MCO09G053' => 'mco', 'MCO11G782' => 'mco', 'MCO15G215' => 'mco', 'MD03G1088500' => 'mdo', 'MD03G1088600' => 'mdo', 'MD04G1130800' => 'mdo', 'MD09G1291700' => 'mdo', 'MD11G1097500' => 'mdo', 'MD11G1097600' => 'mdo', 'MD12G1143900' => 'mdo', 'MD13G1191400' => 'mdo', 'MD16G1191500' => 'mdo', 'Medtr1g085570' => 'mtr', 'Medtr1g104610' => 'mtr', 'Medtr2g097520' => 'mtr', 'Medtr4g021800' => 'mtr', 'Medtr4g021825' => 'mtr', 'Medtr4g064270' => 'mtr', 'Medtr4g064380' => 'mtr', 'Medtr7g062150' => 'mtr', 'MELO3C003138.2' => 'cme', 'MELO3C005187.2' => 'cme', 'MELO3C009252.2' => 'cme', 'MELO3C014481.2' => 'cme', 'MELO3C020616.2' => 'cme', 'MELO3C020617.2' => 'cme', 'MELO3C020618.2' => 'cme', 'Migut.G00328' => 'egut', 'Migut.J00320' => 'egut', 'Migut.L01000' => 'egut', 'Migut.L01953' => 'egut', 'MSTRG.10253' => 'ama', 'MSTRG.19077' => 'ama', 'MSTRG.26780' => 'ama', 'MSTRG.4023' => 'ama', 'MSTRG.5655' => 'ama', 'MSTRG.9992' => 'ama', 'Nitab4.5_0000043g0310' => 'nta', 'Nitab4.5_0000463g0080' => 'nta', 'Nitab4.5_0000705g0170' => 'nta', 'Nitab4.5_0001326g0060' => 'nta', 'Nitab4.5_0001628g0030' => 'nta', 'Nitab4.5_0002103g0110' => 'nta', 'Nitab4.5_0002946g0030' => 'nta', 'Nitab4.5_0004639g0030' => 'nta', 'Nn2g11149' => 'nnu', 'Nn2g13389' => 'nnu', 'Nn4g25326' => 'nnu', 'Nn4g26290' => 'nnu', 'Nn5g29865' => 'nnu', 'Oeu004163.1' => 'oeu', 'Oeu006901.1' => 'oeu', 'Oeu010096.1' => 'oeu', 'Oeu024340.1' => 'oeu', 'Oeu048369.1' => 'oeu', 'Os01g0973000' => 'osa', 'Os03g0273800' => 'osa', 'Os03g0701200' => 'osa', 'Os03g0834050' => 'osa', 'Os07g0634400' => 'osa', 'Peaxi162Scf00092g01414' => 'pax', 'Peaxi162Scf00165g00818' => 'pax', 'Peaxi162Scf00309g00516' => 'pax', 'Peaxi162Scf00774g00218' => 'pax', 'PGR004G1824' => 'pgr', 'PGR004G2606' => 'pgr', 'PGR031G2716' => 'pgr', 'PGR102G2460' => 'pgr', 'PGR142G2599' => 'pgr', 'PGSC0003DMG400000843' => 'stu', 'PGSC0003DMG400008829' => 'stu', 'PGSC0003DMG400030418' => 'stu', 'PGSC0003DMG400031834' => 'stu', 'PGSC0003DMG401028300' => 'stu', 'PGSC0003DMG402028300' => 'stu', 'Phvul.001G219300' => 'pvu', 'Phvul.007G056000' => 'pvu', 'Phvul.007G208000' => 'pvu', 'Phvul.008G119500' => 'pvu', 'Phvul.010G011200' => 'pvu', 'Phvul.010G014800' => 'pvu', 'Phvul.011G062900' => 'pvu', 'Phvul.L007043' => 'pvu', 'Potri.001G242300' => 'ptr', 'Potri.002G185300' => 'ptr', 'Potri.006G086900' => 'ptr', 'Potri.008G151700' => 'ptr', 'Potri.009G033500' => 'ptr', 'Potri.010G089300' => 'ptr', 'Potri.014G110800' => 'ptr', 'Pp3c27_8130' => 'ppa', 'Pp3c6_27410' => 'ppa', 'PRCOL_00001659' => 'pco', 'PRCOL_00001927' => 'pco', 'PRCOL_00003649' => 'pco', 'Prupe.1G011600' => 'ppe', 'Prupe.3G000800' => 'ppe', 'Prupe.3G001100' => 'ppe', 'Prupe.6G072700' => 'ppe', 'Prupe.6G072800' => 'ppe', 'Prupe.6G257300' => 'ppe', 'Prupe.8G033000' => 'ppe', 'Psat0s2633g0080' => 'psa', 'Psat0s3396g0080' => 'psa', 'Psat0s3396g0200' => 'psa', 'Psat3g139080' => 'psa', 'Psat5g285080' => 'psa', 'Psat6g157760' => 'psa', 'Psat6g208440' => 'psa', 'Psat7g215320' => 'psa', 'Psat7g215400' => 'psa', 'Psat7g235600' => 'psa', 'Psat7g235760' => 'psa', 'PSO063G4603' => 'pso', 'PSO210G0182' => 'pso', 'PSO210G0196' => 'pso', 'PSO339G0394' => 'pso', 'PSO339G4127' => 'pso', 'PSO513G0064' => 'pso', 'PSO761G0079' => 'pso', 'QL01p031003' => 'qlo', 'QL01p031078' => 'qlo', 'QL06p003004' => 'qlo', 'QL07p048731' => 'qlo', 'QL09p037427' => 'qlo', 'RcHm_v2.0_Chr3g0466361' => 'rch', 'RcHm_v2.0_Chr3g0485571' => 'rch', 'RcHm_v2.0_Chr4g0416551' => 'rch', 'RcHm_v2.0_Chr5g0065831' => 'rch', 'Rhsim01G0230500' => 'rsi', 'Rhsim05G0194000' => 'rsi', 'Rhsim08G0250400' => 'rsi', 'Sabra02G0131000' => 'sbr', 'Sabra06G0066300' => 'sbr', 'Sabra08G0115500' => 'sbr', 'Sabra09G0023900' => 'sbr', 'Sabra10G0054000' => 'sbr', 'Sabra14G0081500' => 'sbr', 'Sabra16G0147100' => 'sbr', 'SalBow2G2957' => 'sbo', 'SalBow4G3320' => 'sbo', 'SalBow8G1894' => 'sbo', 'Sc07g0007950' => 'sci', 'Sc12g0001360' => 'sci', 'Sc13g0004330' => 'sci', 'Sc20g0005010' => 'sci', 'Sed0000361' => 'sed', 'Sed0001706' => 'sed', 'Sed0002422' => 'sed', 'Sed0004029' => 'sed', 'Sed0004602' => 'sed', 'Sed0004943' => 'sed', 'Sed0008646' => 'sed', 'Sed0023313' => 'sed', 'Sed0024843' => 'sed', 'SEGI_00081' => 'sgi', 'SEGI_00947' => 'sgi', 'SEGI_04046' => 'sgi', 'SEGI_06880' => 'sgi', 'SEGI_09736' => 'sgi', 'SEGI_12741' => 'sgi', 'SEGI_14530' => 'sgi', 'SEGI_20705' => 'sgi', 'SEGI_26088' => 'sgi', 'SEGI_28323' => 'sgi', 'SEGI_33343' => 'sgi', 'SGA_v2.0_scaffold126G33775' => 'sas', 'SGA_v2.0_scaffold2G01337' => 'sas', 'SGA_v2.0_scaffold38G15006' => 'sas', 'SGA_v2.0_scaffold39G15264' => 'sas', 'SGA_v2.0_scaffold453G51880' => 'sas', 'SHI12696' => 'shi', 'SMO367G1096' => 'smo', 'Solyc01g068630.3' => 'sly', 'Solyc05g011880.3' => 'sly', 'Solyc06g076300.3' => 'sly', 'Solyc09g010940.4' => 'sly', 'Solyc09g075890.3' => 'sly', 'Sopen01g030560' => 'spe', 'Sopen05g006630' => 'spe', 'Sopen06g032720' => 'spe', 'Sopen09g005660' => 'spe', 'Sopen09g030690' => 'spe', 'Sp4g14540' => 'spa', 'Sp4g20030' => 'spa', 'Sp5g01320' => 'spa', 'Sp6g21170' => 'spa', 'Sp6g21180' => 'spa', 'Sp6g21190' => 'spa', 'Sp6g40220' => 'spa', 'TAR362G0122' => 'tar', 'TAR362G1338' => 'tar', 'TAR369G0590' => 'tar', 'TAR371G0824' => 'tar', 'TAR622G1429' => 'tar', 'TAR623G0734' => 'tar', 'TAR625G0441' => 'tar', 'TAR629G0976' => 'tar', 'TAR633G1195' => 'tar', 'TAR636G2660' => 'tar', 'THA.LOC104799440' => 'tha', 'THA.LOC104800966' => 'tha', 'THA.LOC104806559' => 'tha', 'THA.LOC104810765' => 'tha', 'THA.LOC104816266' => 'tha', 'THA.LOC104817419' => 'tha', 'THA.LOC104827021' => 'tha', 'Thecc.01G327400' => 'tca', 'Thecc.04G229200' => 'tca', 'Thecc.05G037400' => 'tca', 'Thecc.09G318600' => 'tca', 'Thecc.09G318700' => 'tca', 'Thhalv10006238m.g' => 'esa', 'Thhalv10014321m.g' => 'esa', 'Thhalv10014335m.g' => 'esa', 'Thhalv10015826m.g' => 'esa', 'Thhalv10017107m.g' => 'esa', 'Thhalv10017180m.g' => 'esa', 'Thhalv10029339m.g' => 'esa', 'TPR.G1699' => 'tpr', 'TPR.G23609' => 'tpr', 'TPR.G3081' => 'tpr', 'TPR.G40397' => 'tpr', 'TPR.G5522' => 'tpr', 'TPR.G5618' => 'tpr', 'TPR.G5626' => 'tpr', 'TWI09G1632' => 'twi', 'TWI23G1230' => 'twi', 'TWI53G1064' => 'twi', 'TWI59G0751' => 'twi', 'TWI74G0947' => 'twi', 'TWI77G0337' => 'twi', 'TWI79G1254' => 'twi', 'unitig_0.g2341' => 'ugi', 'unitig_26.g10006' => 'ugi', 'unitig_26.g10008' => 'ugi', 'unitig_26.g9192' => 'ugi', 'vmacro14547' => 'vma', 'vmacro15333' => 'vma', 'vmacro18743' => 'vma', 'vmacro20166' => 'vma', 'VMungo0331G0523' => 'vmu', 'VMungo0331G1202' => 'vmu', 'VMungo0720G1228' => 'vmu', 'VMungo0720G1514' => 'vmu', 'VMungo1080G0169' => 'vmu', 'VMungo1127G1475' => 'vmu', 'VMungo1383G1208' => 'vmu', 'VMungo1383G1698' => 'vmu', 'Zm00001eb012270' => 'zma', 'Zm00001eb054100' => 'zma', 'Zm00001eb063350' => 'zma', 'Zm00001eb328560' => 'zma', 'Zm00001eb342820' => 'zma', 'Zm00001eb362210' => 'zma', 'Zm00001eb397730' => 'zma', 'Zm00001eb399750' => 'zma' ) $gf_id = 'HOM05D000959' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000959' ) $data_identifier = 'HOM05D000959' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 5, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 5, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 10, 'mbi' => (int) 3, 'mco' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 2, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 3, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 11, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399750' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000959', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '622', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p07100' => 'bna', 'A03p11720' => 'bna', 'A05p08300' => 'bna', 'A05p13380' => 'bna', 'A09p54130' => 'bna', 'A10p16690' => 'bna', 'A10p16700' => 'bna', 'A10p33390' => 'bna', 'Aa31LG10G16020' => 'aar', 'Aa31LG1G11810' => 'aar', 'Aa31LG1G11830' => 'aar', 'Aa31LG1G22510' => 'aar', 'Aa31LG5G4890' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5793' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2310' => 'aag', 'Actinidia08499' => 'ach', 'Actinidia11262' => 'ach', 'Actinidia23926' => 'ach', 'Actinidia34420' => 'ach', 'Actinidia36970' => 'ach', 'Ah.02g111220' => 'amhyb', 'Ah.15g097750' => 'amhyb', 'AL4G27500' => 'aly', 'AL6G11470' => 'aly', 'AL8G35950' => 'aly', 'AL8G35960' => 'aly', 'AL8G35970' => 'aly', 'Aqoxy1G00912' => 'aox', 'Aqoxy2G02253' => 'aox', 'Aqoxy2G02411' => 'aox', 'Aqoxy5G00485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BZ66YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K8ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM4FUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6BF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HFV7XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25JBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0YNNV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MAKK6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P70IT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP2Z6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V61LZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YWP64R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3S9AI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7PGHH' => 'arhy', 'AT2G32150' => 'ath', 'AT3G62040' => 'ath', 'AT5G02230' => 'ath', 'AT5G59480' => 'ath', 'AT5G59490' => 'ath', 'ATR0332G060' => 'atr', 'ATR0559G190' => 'atr', 'ATR0693G294' => 'atr', 'Atru.chr3.3975' => 'acertr', 'Atru.chr3.3976' => 'acertr', 'Atru.chr3.3977' => 'acertr', 'Atru.chr4.2498' => 'acertr', 'Atru.chr5.838' => 'acertr', 'Atru.chr8.1990' => 'acertr', 'Atru.chr8.1991' => 'acertr', 'Atru.chr8.1992' => 'acertr', 'AUR62001759' => 'cqu', 'AUR62009545' => 'cqu', 'AUR62010474' => 'cqu', 'AUR62025820' => 'cqu', 'AUR62030422' => 'cqu', 'AUR62033605' => 'cqu', 'AUR62038615' => 'cqu', 'AUR62041347' => 'cqu', 'BcaB01g04574' => 'bca', 'BcaB02g09263' => 'bca', 'BcaB02g10453' => 'bca', 'BcaB05g22513' => 'bca', 'BcaB08g36253' => 'bca', 'BcaB08g36254' => 'bca', 'BcaC01g06519' => 'bca', 'BcaC02g11889' => 'bca', 'BcaC03g14010' => 'bca', 'BcaC03g18439' => 'bca', 'BcaC04g19765' => 'bca', 'BcaC09g48432' => 'bca', 'BcaNung07302' => 'bca', 'BolC2t06040H' => 'bol', 'BolC2t07346H' => 'bol', 'BolC3t13817H' => 'bol', 'BolC4t22625H' => 'bol', 'BolC4t23297H' => 'bol', 'BolC8t51278H' => 'bol', 'BolC9t58050H' => 'bol', 'BolC9t58051H' => 'bol', 'BolC9t60163H' => 'bol', 'BraA02t04712Z' => 'bra', 'BraA02t05791Z' => 'bra', 'BraA03t10483Z' => 'bra', 'BraA05t19795Z' => 'bra', 'BraA05t20276Z' => 'bra', 'BraA09t40827Z' => 'bra', 'BraA10t43750Z' => 'bra', 'BraA10t43751Z' => 'bra', 'BraA10t45370Z' => 'bra', 'C02p00400' => 'bna', 'C02p12460' => 'bna', 'C03p13680' => 'bna', 'C04p10270' => 'bna', 'C04p17500' => 'bna', 'C08p37010' => 'bna', 'C09p51880' => 'bna', 'C09p51890' => 'bna', 'C09p74300' => 'bna', 'CAN.G179.26' => 'can', 'CAN.G3384.1' => 'can', 'CAN.G394.68' => 'can', 'CAN.G907.13' => 'can', 'CANSAT11G0012' => 'cansat', 'CANSAT25G1586' => 'cansat', 'CANSAT35G0735' => 'cansat', 'CANSAT54G0556' => 'cansat', 'CANSAT64G0356' => 'cansat', 'CANSAT78G2042' => 'cansat', 'CARHR125920' => 'chi', 'CARHR131910' => 'chi', 'CARHR172390' => 'chi', 'CARHR211140' => 'chi', 'CARHR285850' => 'chi', 'CARHR285860' => 'chi', 'Carub.0004s1347' => 'cru', 'Carub.0004s1960' => 'cru', 'Carub.0005s2880' => 'cru', 'Carub.0006s0107' => 'cru', 'Carub.0008s2015' => 'cru', 'Carub.0008s2016' => 'cru', 'Carub.0008s2017' => 'cru', 'Ca_01315_v3' => 'car', 'Ca_05063_v3' => 'car', 'Ca_10231_v3' => 'car', 'Ca_10913_v3' => 'car', 'Ca_19156_v3' => 'car', 'Ca_23644_v3' => 'car', 'Ca_26735_v3' => 'car', 'Cc01_g13130' => 'ccan', 'Cc02_g21690' => 'ccan', 'Cc03_g03600' => 'ccan', 'Cc06_g02510' => 'ccan', 'CDE02G1265' => 'cde', 'CDE05G0415' => 'cde', 'CDE08G1082' => 'cde', 'Cfa005780' => 'cfa', 'Cfa011522' => 'cfa', 'Cfa011523' => 'cfa', 'Cfa015627' => 'cfa', 'Cfa017359' => 'cfa', 'Ciclev10005687m.g' => 'ccl', 'Ciclev10012173m.g' => 'ccl', 'Ciclev10021621m.g' => 'ccl', 'Ciclev10028968m.g' => 'ccl', 'Ciclev10029907m.g' => 'ccl', 'CiPaw.01G164800' => 'cil', 'CiPaw.07G083700' => 'cil', 'CiPaw.07G127000' => 'cil', 'CiPaw.07G136900' => 'cil', 'CiPaw.08G081700' => 'cil', 'CiPaw.09G194600' => 'cil', 'CiPaw.10G146500' => 'cil', 'CiPaw.13G091500' => 'cil', 'CiPaw.13G091600' => 'cil', 'ClCG00G003390' => 'cla', 'ClCG01G007220' => 'cla', 'ClCG03G001370' => 'cla', 'ClCG04G008100' => 'cla', 'ClCG06G006110' => 'cla', 'ClCG06G006130' => 'cla', 'ClCG10G021210' => 'cla', 'COL.COLO4_07648' => 'col', 'COL.COLO4_07650' => 'col', 'COL.COLO4_07651' => 'col', 'COL.COLO4_14780' => 'col', 'COL.COLO4_18546' => 'col', 'COL.COLO4_18547' => 'col', 'COL.COLO4_23103' => 'col', 'COL.COLO4_30419' => 'col', 'COL.COLO4_34232' => 'col', 'Cpa.g.sc169.20' => 'cpa', 'Cpa.g.sc57.45' => 'cpa', 'Cpa.g.sc58.124' => 'cpa', 'Cpa.g.sc58.125' => 'cpa', 'Cpa.g.sc81.118' => 'cpa', 'Cpa.g.sc81.119' => 'cpa', 'Cre12.g524700' => 'cre', 'CsaV3_1G034430' => 'csa', 'CsaV3_1G034440' => 'csa', 'CsaV3_1G034450' => 'csa', 'CsaV3_3G034830' => 'csa', 'CsaV3_4G025090' => 'csa', 'CsaV3_5G018660' => 'csa', 'CsaV3_6G038160' => 'csa', 'CSS0003447' => 'camsi', 'CSS0017840' => 'camsi', 'CSS0019260' => 'camsi', 'CSS0040375' => 'camsi', 'CSS0042533' => 'camsi', 'DCAR_005960' => 'dca', 'DCAR_012104' => 'dca', 'DCAR_012105' => 'dca', 'DCAR_012293' => 'dca', 'DCAR_015632' => 'dca', 'DCAR_024602' => 'dca', 'DCAR_028752' => 'dca', 'Dinv06261' => 'din', 'Dinv13982' => 'din', 'Dinv17029' => 'din', 'Dinv18463' => 'din', 'Dinv33181' => 'din', 'Dinv35585' => 'din', 'Dinv37161' => 'din', 'Dinv42977' => 'din', 'Dinv43122' => 'din', 'Dinv44517' => 'din', 'Duzib093G0256' => 'dzi', 'Duzib106G1254' => 'dzi', 'Duzib128G1789' => 'dzi', 'Duzib133G0633' => 'dzi', 'Duzib138G0510' => 'dzi', 'Duzib150G1084' => 'dzi', 'Duzib168G0488' => 'dzi', 'Duzib168G1523' => 'dzi', 'Duzib170G0133' => 'dzi', 'ECA234G1433' => 'eca', 'ECA236G1432' => 'eca', 'ECA236G2256' => 'eca', 'ECA236G2365' => 'eca', 'ECA236G4830' => 'eca', 'ECA248G1505' => 'eca', 'EL10Ac3g06431' => 'bvu', 'EL10Ac5g12577' => 'bvu', 'EL10Ac6g13533' => 'bvu', 'EL10Ac7g16045' => 'bvu', 'Eucgr.A01281' => 'egr', 'Eucgr.B02326' => 'egr', 'Eucgr.H03532' => 'egr', 'Eucgr.K00553' => 'egr', 'Eucgr.K03116' => 'egr', 'FAN02G3963' => 'fan', 'FAN05G0438' => 'fan', 'FAN09G2434' => 'fan', 'FAN12G3984' => 'fan', 'FAN14G0798' => 'fan', 'FAN17G0652' => 'fan', 'FAN19G1988' => 'fan', 'FAN22G0632' => 'fan', 'FAN23G0387' => 'fan', 'FAN26G1323' => 'fan', 'FAN28G0666' => 'fan', 'FvH4_1g26080' => 'fve', 'FvH4_3g36780' => 'fve', 'FvH4_4g15270' => 'fve', 'FvH4_6g13490' => 'fve', 'Glyma.01G098700' => 'gma', 'Glyma.03G065900' => 'gma', 'Glyma.03G073754' => 'gma', 'Glyma.03G073758' => 'gma', 'Glyma.03G083200' => 'gma', 'Glyma.03G225500' => 'gma', 'Glyma.05G037766' => 'gma', 'Glyma.07G133500' => 'gma', 'Glyma.10G139400' => 'gma', 'Glyma.10G248900' => 'gma', 'Glyma.11G137800' => 'gma', 'Glyma.12G061300' => 'gma', 'Glyma.13G337900' => 'gma', 'Glyma.15G036600' => 'gma', 'Glyma.18G182800' => 'gma', 'Glyma.19G222500' => 'gma', 'Glyma.20G144800' => 'gma', 'Gohir.A01G222000' => 'ghi', 'Gohir.A03G044000' => 'ghi', 'Gohir.A03G044100' => 'ghi', 'Gohir.A04G083100' => 'ghi', 'Gohir.A07G127200' => 'ghi', 'Gohir.A07G132400' => 'ghi', 'Gohir.A08G000700' => 'ghi', 'Gohir.A11G327300' => 'ghi', 'Gohir.D01G211500' => 'ghi', 'Gohir.D03G123400' => 'ghi', 'Gohir.D03G123500' => 'ghi', 'Gohir.D04G121800' => 'ghi', 'Gohir.D07G131500' => 'ghi', 'Gohir.D07G136600' => 'ghi', 'Gohir.D08G011600' => 'ghi', 'Gohir.D11G346200' => 'ghi', 'Gorai.001G142800' => 'gra', 'Gorai.001G148700' => 'gra', 'Gorai.002G257300' => 'gra', 'Gorai.003G130000' => 'gra', 'Gorai.003G130100' => 'gra', 'Gorai.004G005300' => 'gra', 'Gorai.007G376500' => 'gra', 'Gorai.012G104700' => 'gra', 'GSVIVG01017946001' => 'vvi', 'GSVIVG01024928001' => 'vvi', 'GSVIVG01028227001' => 'vvi', 'GSVIVG01034151001' => 'vvi', 'HanXRQChr05g0135031' => 'han', 'HanXRQChr05g0135041' => 'han', 'HanXRQChr05g0140021' => 'han', 'HanXRQChr06g0178981' => 'han', 'HanXRQChr07g0188251' => 'han', 'HanXRQChr08g0235311' => 'han', 'HanXRQChr09g0271011' => 'han', 'HanXRQChr10g0293321' => 'han', 'HanXRQChr13g0388171' => 'han', 'Haze_00916' => 'cav', 'Haze_05063' => 'cav', 'Haze_20814' => 'cav', 'Haze_24128' => 'cav', 'Hma1.2p1_0745F.1_g212010' => 'hma', 'Hma1.2p1_0757F.1_g213260' => 'hma', 'Hma1.2p1_0936F.1_g238840' => 'hma', 'Hma1.2p1_1735F.1_g299890' => 'hma', 'Hma1.2p1_1861F.1_g305685' => 'hma', 'HPP92_003397' => 'vpl', 'HPP92_012597' => 'vpl', 'HPP92_015520' => 'vpl', 'HPP92_015539' => 'vpl', 'HPP92_020373' => 'vpl', 'Hund04938' => 'sun', 'Hund10677' => 'sun', 'Hund11033' => 'sun', 'Hund12155' => 'sun', 'Lalb_Chr01g0022551' => 'lal', 'Lalb_Chr03g0042341' => 'lal', 'Lalb_Chr07g0192931' => 'lal', 'Lalb_Chr12g0209551' => 'lal', 'Lalb_Chr19g0125251' => 'lal', 'Lalb_Chr19g0137891' => 'lal', 'Lalb_Chr21g0304641' => 'lal', 'Lalb_Chr21g0309881' => 'lal', 'Lj1A5T12' => 'lonja', 'Lj1C148G10' => 'lonja', 'Lj2A93T83' => 'lonja', 'Lj3A738G68' => 'lonja', 'Lj3C966T1' => 'lonja', 'Lj3g0018958' => 'lja', 'Lj3g0021831' => 'lja', 'Lj3g0025443' => 'lja', 'Lj4g0026809' => 'lja', 'Lj5g0012558' => 'lja', 'Lj5g0021586' => 'lja', 'Lsat_1_v5_gn_5_156840' => 'lsa', 'Lsat_1_v5_gn_8_73460' => 'lsa', 'Lsat_1_v5_gn_8_73481' => 'lsa', 'Lsat_1_v5_gn_9_31601' => 'lsa', 'Lsat_1_v5_gn_9_77320' => 'lsa', 'Manes.01G171300' => 'mes', 'Manes.01G171400' => 'mes', 'Manes.01G236100' => 'mes', 'Manes.02G130500' => 'mes', 'Manes.02G130600' => 'mes', 'Manes.03G180200' => 'mes', 'Manes.05G007000' => 'mes', 'Manes.08G084400' => 'mes', 'Manes.09G092600' => 'mes', 'Manes.15G027900' => 'mes', 'MBI04_g40948_MAGBIO' => 'mbi', 'MBI14_g12123_MAGBIO' => 'mbi', 'MBI18_g28915_MAGBIO' => 'mbi', 'MCO09G053' => 'mco', 'MCO11G782' => 'mco', 'MCO15G215' => 'mco', 'MD03G1088500' => 'mdo', 'MD03G1088600' => 'mdo', 'MD04G1130800' => 'mdo', 'MD09G1291700' => 'mdo', 'MD11G1097500' => 'mdo', 'MD11G1097600' => 'mdo', 'MD12G1143900' => 'mdo', 'MD13G1191400' => 'mdo', 'MD16G1191500' => 'mdo', 'Medtr1g085570' => 'mtr', 'Medtr1g104610' => 'mtr', 'Medtr2g097520' => 'mtr', 'Medtr4g021800' => 'mtr', 'Medtr4g021825' => 'mtr', 'Medtr4g064270' => 'mtr', 'Medtr4g064380' => 'mtr', 'Medtr7g062150' => 'mtr', 'MELO3C003138.2' => 'cme', 'MELO3C005187.2' => 'cme', 'MELO3C009252.2' => 'cme', 'MELO3C014481.2' => 'cme', 'MELO3C020616.2' => 'cme', 'MELO3C020617.2' => 'cme', 'MELO3C020618.2' => 'cme', 'Migut.G00328' => 'egut', 'Migut.J00320' => 'egut', 'Migut.L01000' => 'egut', 'Migut.L01953' => 'egut', 'MSTRG.10253' => 'ama', 'MSTRG.19077' => 'ama', 'MSTRG.26780' => 'ama', 'MSTRG.4023' => 'ama', 'MSTRG.5655' => 'ama', 'MSTRG.9992' => 'ama', 'Nitab4.5_0000043g0310' => 'nta', 'Nitab4.5_0000463g0080' => 'nta', 'Nitab4.5_0000705g0170' => 'nta', 'Nitab4.5_0001326g0060' => 'nta', 'Nitab4.5_0001628g0030' => 'nta', 'Nitab4.5_0002103g0110' => 'nta', 'Nitab4.5_0002946g0030' => 'nta', 'Nitab4.5_0004639g0030' => 'nta', 'Nn2g11149' => 'nnu', 'Nn2g13389' => 'nnu', 'Nn4g25326' => 'nnu', 'Nn4g26290' => 'nnu', 'Nn5g29865' => 'nnu', 'Oeu004163.1' => 'oeu', 'Oeu006901.1' => 'oeu', 'Oeu010096.1' => 'oeu', 'Oeu024340.1' => 'oeu', 'Oeu048369.1' => 'oeu', 'Os01g0973000' => 'osa', 'Os03g0273800' => 'osa', 'Os03g0701200' => 'osa', 'Os03g0834050' => 'osa', 'Os07g0634400' => 'osa', 'Peaxi162Scf00092g01414' => 'pax', 'Peaxi162Scf00165g00818' => 'pax', 'Peaxi162Scf00309g00516' => 'pax', 'Peaxi162Scf00774g00218' => 'pax', 'PGR004G1824' => 'pgr', 'PGR004G2606' => 'pgr', 'PGR031G2716' => 'pgr', 'PGR102G2460' => 'pgr', 'PGR142G2599' => 'pgr', 'PGSC0003DMG400000843' => 'stu', 'PGSC0003DMG400008829' => 'stu', 'PGSC0003DMG400030418' => 'stu', 'PGSC0003DMG400031834' => 'stu', 'PGSC0003DMG401028300' => 'stu', 'PGSC0003DMG402028300' => 'stu', 'Phvul.001G219300' => 'pvu', 'Phvul.007G056000' => 'pvu', 'Phvul.007G208000' => 'pvu', 'Phvul.008G119500' => 'pvu', 'Phvul.010G011200' => 'pvu', 'Phvul.010G014800' => 'pvu', 'Phvul.011G062900' => 'pvu', 'Phvul.L007043' => 'pvu', 'Potri.001G242300' => 'ptr', 'Potri.002G185300' => 'ptr', 'Potri.006G086900' => 'ptr', 'Potri.008G151700' => 'ptr', 'Potri.009G033500' => 'ptr', 'Potri.010G089300' => 'ptr', 'Potri.014G110800' => 'ptr', 'Pp3c27_8130' => 'ppa', 'Pp3c6_27410' => 'ppa', 'PRCOL_00001659' => 'pco', 'PRCOL_00001927' => 'pco', 'PRCOL_00003649' => 'pco', 'Prupe.1G011600' => 'ppe', 'Prupe.3G000800' => 'ppe', 'Prupe.3G001100' => 'ppe', 'Prupe.6G072700' => 'ppe', 'Prupe.6G072800' => 'ppe', 'Prupe.6G257300' => 'ppe', 'Prupe.8G033000' => 'ppe', 'Psat0s2633g0080' => 'psa', 'Psat0s3396g0080' => 'psa', 'Psat0s3396g0200' => 'psa', 'Psat3g139080' => 'psa', 'Psat5g285080' => 'psa', 'Psat6g157760' => 'psa', 'Psat6g208440' => 'psa', 'Psat7g215320' => 'psa', 'Psat7g215400' => 'psa', 'Psat7g235600' => 'psa', 'Psat7g235760' => 'psa', 'PSO063G4603' => 'pso', 'PSO210G0182' => 'pso', 'PSO210G0196' => 'pso', 'PSO339G0394' => 'pso', 'PSO339G4127' => 'pso', 'PSO513G0064' => 'pso', 'PSO761G0079' => 'pso', 'QL01p031003' => 'qlo', 'QL01p031078' => 'qlo', 'QL06p003004' => 'qlo', 'QL07p048731' => 'qlo', 'QL09p037427' => 'qlo', 'RcHm_v2.0_Chr3g0466361' => 'rch', 'RcHm_v2.0_Chr3g0485571' => 'rch', 'RcHm_v2.0_Chr4g0416551' => 'rch', 'RcHm_v2.0_Chr5g0065831' => 'rch', 'Rhsim01G0230500' => 'rsi', 'Rhsim05G0194000' => 'rsi', 'Rhsim08G0250400' => 'rsi', 'Sabra02G0131000' => 'sbr', 'Sabra06G0066300' => 'sbr', 'Sabra08G0115500' => 'sbr', 'Sabra09G0023900' => 'sbr', 'Sabra10G0054000' => 'sbr', 'Sabra14G0081500' => 'sbr', 'Sabra16G0147100' => 'sbr', 'SalBow2G2957' => 'sbo', 'SalBow4G3320' => 'sbo', 'SalBow8G1894' => 'sbo', 'Sc07g0007950' => 'sci', 'Sc12g0001360' => 'sci', 'Sc13g0004330' => 'sci', 'Sc20g0005010' => 'sci', 'Sed0000361' => 'sed', 'Sed0001706' => 'sed', 'Sed0002422' => 'sed', 'Sed0004029' => 'sed', 'Sed0004602' => 'sed', 'Sed0004943' => 'sed', 'Sed0008646' => 'sed', 'Sed0023313' => 'sed', 'Sed0024843' => 'sed', 'SEGI_00081' => 'sgi', 'SEGI_00947' => 'sgi', 'SEGI_04046' => 'sgi', 'SEGI_06880' => 'sgi', 'SEGI_09736' => 'sgi', 'SEGI_12741' => 'sgi', 'SEGI_14530' => 'sgi', 'SEGI_20705' => 'sgi', 'SEGI_26088' => 'sgi', 'SEGI_28323' => 'sgi', 'SEGI_33343' => 'sgi', 'SGA_v2.0_scaffold126G33775' => 'sas', 'SGA_v2.0_scaffold2G01337' => 'sas', 'SGA_v2.0_scaffold38G15006' => 'sas', 'SGA_v2.0_scaffold39G15264' => 'sas', 'SGA_v2.0_scaffold453G51880' => 'sas', 'SHI12696' => 'shi', 'SMO367G1096' => 'smo', 'Solyc01g068630.3' => 'sly', 'Solyc05g011880.3' => 'sly', 'Solyc06g076300.3' => 'sly', 'Solyc09g010940.4' => 'sly', 'Solyc09g075890.3' => 'sly', 'Sopen01g030560' => 'spe', 'Sopen05g006630' => 'spe', 'Sopen06g032720' => 'spe', 'Sopen09g005660' => 'spe', 'Sopen09g030690' => 'spe', 'Sp4g14540' => 'spa', 'Sp4g20030' => 'spa', 'Sp5g01320' => 'spa', 'Sp6g21170' => 'spa', 'Sp6g21180' => 'spa', 'Sp6g21190' => 'spa', 'Sp6g40220' => 'spa', 'TAR362G0122' => 'tar', 'TAR362G1338' => 'tar', 'TAR369G0590' => 'tar', 'TAR371G0824' => 'tar', 'TAR622G1429' => 'tar', 'TAR623G0734' => 'tar', 'TAR625G0441' => 'tar', 'TAR629G0976' => 'tar', 'TAR633G1195' => 'tar', 'TAR636G2660' => 'tar', 'THA.LOC104799440' => 'tha', 'THA.LOC104800966' => 'tha', 'THA.LOC104806559' => 'tha', 'THA.LOC104810765' => 'tha', 'THA.LOC104816266' => 'tha', 'THA.LOC104817419' => 'tha', 'THA.LOC104827021' => 'tha', 'Thecc.01G327400' => 'tca', 'Thecc.04G229200' => 'tca', 'Thecc.05G037400' => 'tca', 'Thecc.09G318600' => 'tca', 'Thecc.09G318700' => 'tca', 'Thhalv10006238m.g' => 'esa', 'Thhalv10014321m.g' => 'esa', 'Thhalv10014335m.g' => 'esa', 'Thhalv10015826m.g' => 'esa', 'Thhalv10017107m.g' => 'esa', 'Thhalv10017180m.g' => 'esa', 'Thhalv10029339m.g' => 'esa', 'TPR.G1699' => 'tpr', 'TPR.G23609' => 'tpr', 'TPR.G3081' => 'tpr', 'TPR.G40397' => 'tpr', 'TPR.G5522' => 'tpr', 'TPR.G5618' => 'tpr', 'TPR.G5626' => 'tpr', 'TWI09G1632' => 'twi', 'TWI23G1230' => 'twi', 'TWI53G1064' => 'twi', 'TWI59G0751' => 'twi', 'TWI74G0947' => 'twi', 'TWI77G0337' => 'twi', 'TWI79G1254' => 'twi', 'unitig_0.g2341' => 'ugi', 'unitig_26.g10006' => 'ugi', 'unitig_26.g10008' => 'ugi', 'unitig_26.g9192' => 'ugi', 'vmacro14547' => 'vma', 'vmacro15333' => 'vma', 'vmacro18743' => 'vma', 'vmacro20166' => 'vma', 'VMungo0331G0523' => 'vmu', 'VMungo0331G1202' => 'vmu', 'VMungo0720G1228' => 'vmu', 'VMungo0720G1514' => 'vmu', 'VMungo1080G0169' => 'vmu', 'VMungo1127G1475' => 'vmu', 'VMungo1383G1208' => 'vmu', 'VMungo1383G1698' => 'vmu', 'Zm00001eb012270' => 'zma', 'Zm00001eb054100' => 'zma', 'Zm00001eb063350' => 'zma', 'Zm00001eb328560' => 'zma', 'Zm00001eb342820' => 'zma', 'Zm00001eb362210' => 'zma', 'Zm00001eb397730' => 'zma', 'Zm00001eb399750' => 'zma' ), 'gf_id' => 'HOM05D000959', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000959' ), 'data_identifier' => 'HOM05D000959', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000959', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '622', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p07100' => 'bna', 'A03p11720' => 'bna', 'A05p08300' => 'bna', 'A05p13380' => 'bna', 'A09p54130' => 'bna', 'A10p16690' => 'bna', 'A10p16700' => 'bna', 'A10p33390' => 'bna', 'Aa31LG10G16020' => 'aar', 'Aa31LG1G11810' => 'aar', 'Aa31LG1G11830' => 'aar', 'Aa31LG1G22510' => 'aar', 'Aa31LG5G4890' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5793' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2310' => 'aag', 'Actinidia08499' => 'ach', 'Actinidia11262' => 'ach', 'Actinidia23926' => 'ach', 'Actinidia34420' => 'ach', 'Actinidia36970' => 'ach', 'Ah.02g111220' => 'amhyb', 'Ah.15g097750' => 'amhyb', 'AL4G27500' => 'aly', 'AL6G11470' => 'aly', 'AL8G35950' => 'aly', 'AL8G35960' => 'aly', 'AL8G35970' => 'aly', 'Aqoxy1G00912' => 'aox', 'Aqoxy2G02253' => 'aox', 'Aqoxy2G02411' => 'aox', 'Aqoxy5G00485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BZ66YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K8ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM4FUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6BF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HFV7XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25JBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0YNNV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MAKK6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P70IT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP2Z6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V61LZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YWP64R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3S9AI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7PGHH' => 'arhy', 'AT2G32150' => 'ath', 'AT3G62040' => 'ath', 'AT5G02230' => 'ath', 'AT5G59480' => 'ath', 'AT5G59490' => 'ath', 'ATR0332G060' => 'atr', 'ATR0559G190' => 'atr', 'ATR0693G294' => 'atr', 'Atru.chr3.3975' => 'acertr', 'Atru.chr3.3976' => 'acertr', 'Atru.chr3.3977' => 'acertr', 'Atru.chr4.2498' => 'acertr', 'Atru.chr5.838' => 'acertr', 'Atru.chr8.1990' => 'acertr', 'Atru.chr8.1991' => 'acertr', 'Atru.chr8.1992' => 'acertr', 'AUR62001759' => 'cqu', 'AUR62009545' => 'cqu', 'AUR62010474' => 'cqu', 'AUR62025820' => 'cqu', 'AUR62030422' => 'cqu', 'AUR62033605' => 'cqu', 'AUR62038615' => 'cqu', 'AUR62041347' => 'cqu', 'BcaB01g04574' => 'bca', 'BcaB02g09263' => 'bca', 'BcaB02g10453' => 'bca', 'BcaB05g22513' => 'bca', 'BcaB08g36253' => 'bca', 'BcaB08g36254' => 'bca', 'BcaC01g06519' => 'bca', 'BcaC02g11889' => 'bca', 'BcaC03g14010' => 'bca', 'BcaC03g18439' => 'bca', 'BcaC04g19765' => 'bca', 'BcaC09g48432' => 'bca', 'BcaNung07302' => 'bca', 'BolC2t06040H' => 'bol', 'BolC2t07346H' => 'bol', 'BolC3t13817H' => 'bol', 'BolC4t22625H' => 'bol', 'BolC4t23297H' => 'bol', 'BolC8t51278H' => 'bol', 'BolC9t58050H' => 'bol', 'BolC9t58051H' => 'bol', 'BolC9t60163H' => 'bol', 'BraA02t04712Z' => 'bra', 'BraA02t05791Z' => 'bra', 'BraA03t10483Z' => 'bra', 'BraA05t19795Z' => 'bra', 'BraA05t20276Z' => 'bra', 'BraA09t40827Z' => 'bra', 'BraA10t43750Z' => 'bra', 'BraA10t43751Z' => 'bra', 'BraA10t45370Z' => 'bra', 'C02p00400' => 'bna', 'C02p12460' => 'bna', 'C03p13680' => 'bna', 'C04p10270' => 'bna', 'C04p17500' => 'bna', 'C08p37010' => 'bna', 'C09p51880' => 'bna', 'C09p51890' => 'bna', 'C09p74300' => 'bna', 'CAN.G179.26' => 'can', 'CAN.G3384.1' => 'can', 'CAN.G394.68' => 'can', 'CAN.G907.13' => 'can', 'CANSAT11G0012' => 'cansat', 'CANSAT25G1586' => 'cansat', 'CANSAT35G0735' => 'cansat', 'CANSAT54G0556' => 'cansat', 'CANSAT64G0356' => 'cansat', 'CANSAT78G2042' => 'cansat', 'CARHR125920' => 'chi', 'CARHR131910' => 'chi', 'CARHR172390' => 'chi', 'CARHR211140' => 'chi', 'CARHR285850' => 'chi', 'CARHR285860' => 'chi', 'Carub.0004s1347' => 'cru', 'Carub.0004s1960' => 'cru', 'Carub.0005s2880' => 'cru', 'Carub.0006s0107' => 'cru', 'Carub.0008s2015' => 'cru', 'Carub.0008s2016' => 'cru', 'Carub.0008s2017' => 'cru', 'Ca_01315_v3' => 'car', 'Ca_05063_v3' => 'car', 'Ca_10231_v3' => 'car', 'Ca_10913_v3' => 'car', 'Ca_19156_v3' => 'car', 'Ca_23644_v3' => 'car', 'Ca_26735_v3' => 'car', 'Cc01_g13130' => 'ccan', 'Cc02_g21690' => 'ccan', 'Cc03_g03600' => 'ccan', 'Cc06_g02510' => 'ccan', 'CDE02G1265' => 'cde', 'CDE05G0415' => 'cde', 'CDE08G1082' => 'cde', 'Cfa005780' => 'cfa', 'Cfa011522' => 'cfa', 'Cfa011523' => 'cfa', 'Cfa015627' => 'cfa', 'Cfa017359' => 'cfa', 'Ciclev10005687m.g' => 'ccl', 'Ciclev10012173m.g' => 'ccl', 'Ciclev10021621m.g' => 'ccl', 'Ciclev10028968m.g' => 'ccl', 'Ciclev10029907m.g' => 'ccl', 'CiPaw.01G164800' => 'cil', 'CiPaw.07G083700' => 'cil', 'CiPaw.07G127000' => 'cil', 'CiPaw.07G136900' => 'cil', 'CiPaw.08G081700' => 'cil', 'CiPaw.09G194600' => 'cil', 'CiPaw.10G146500' => 'cil', 'CiPaw.13G091500' => 'cil', 'CiPaw.13G091600' => 'cil', 'ClCG00G003390' => 'cla', 'ClCG01G007220' => 'cla', 'ClCG03G001370' => 'cla', 'ClCG04G008100' => 'cla', 'ClCG06G006110' => 'cla', 'ClCG06G006130' => 'cla', 'ClCG10G021210' => 'cla', 'COL.COLO4_07648' => 'col', 'COL.COLO4_07650' => 'col', 'COL.COLO4_07651' => 'col', 'COL.COLO4_14780' => 'col', 'COL.COLO4_18546' => 'col', 'COL.COLO4_18547' => 'col', 'COL.COLO4_23103' => 'col', 'COL.COLO4_30419' => 'col', 'COL.COLO4_34232' => 'col', 'Cpa.g.sc169.20' => 'cpa', 'Cpa.g.sc57.45' => 'cpa', 'Cpa.g.sc58.124' => 'cpa', 'Cpa.g.sc58.125' => 'cpa', 'Cpa.g.sc81.118' => 'cpa', 'Cpa.g.sc81.119' => 'cpa', 'Cre12.g524700' => 'cre', 'CsaV3_1G034430' => 'csa', 'CsaV3_1G034440' => 'csa', 'CsaV3_1G034450' => 'csa', 'CsaV3_3G034830' => 'csa', 'CsaV3_4G025090' => 'csa', 'CsaV3_5G018660' => 'csa', 'CsaV3_6G038160' => 'csa', 'CSS0003447' => 'camsi', 'CSS0017840' => 'camsi', 'CSS0019260' => 'camsi', 'CSS0040375' => 'camsi', 'CSS0042533' => 'camsi', 'DCAR_005960' => 'dca', 'DCAR_012104' => 'dca', 'DCAR_012105' => 'dca', 'DCAR_012293' => 'dca', 'DCAR_015632' => 'dca', 'DCAR_024602' => 'dca', 'DCAR_028752' => 'dca', 'Dinv06261' => 'din', 'Dinv13982' => 'din', 'Dinv17029' => 'din', 'Dinv18463' => 'din', 'Dinv33181' => 'din', 'Dinv35585' => 'din', 'Dinv37161' => 'din', 'Dinv42977' => 'din', 'Dinv43122' => 'din', 'Dinv44517' => 'din', 'Duzib093G0256' => 'dzi', 'Duzib106G1254' => 'dzi', 'Duzib128G1789' => 'dzi', 'Duzib133G0633' => 'dzi', 'Duzib138G0510' => 'dzi', 'Duzib150G1084' => 'dzi', 'Duzib168G0488' => 'dzi', 'Duzib168G1523' => 'dzi', 'Duzib170G0133' => 'dzi', 'ECA234G1433' => 'eca', 'ECA236G1432' => 'eca', 'ECA236G2256' => 'eca', 'ECA236G2365' => 'eca', 'ECA236G4830' => 'eca', 'ECA248G1505' => 'eca', 'EL10Ac3g06431' => 'bvu', 'EL10Ac5g12577' => 'bvu', 'EL10Ac6g13533' => 'bvu', 'EL10Ac7g16045' => 'bvu', 'Eucgr.A01281' => 'egr', 'Eucgr.B02326' => 'egr', 'Eucgr.H03532' => 'egr', 'Eucgr.K00553' => 'egr', 'Eucgr.K03116' => 'egr', 'FAN02G3963' => 'fan', 'FAN05G0438' => 'fan', 'FAN09G2434' => 'fan', 'FAN12G3984' => 'fan', 'FAN14G0798' => 'fan', 'FAN17G0652' => 'fan', 'FAN19G1988' => 'fan', 'FAN22G0632' => 'fan', 'FAN23G0387' => 'fan', 'FAN26G1323' => 'fan', 'FAN28G0666' => 'fan', 'FvH4_1g26080' => 'fve', 'FvH4_3g36780' => 'fve', 'FvH4_4g15270' => 'fve', 'FvH4_6g13490' => 'fve', 'Glyma.01G098700' => 'gma', 'Glyma.03G065900' => 'gma', 'Glyma.03G073754' => 'gma', 'Glyma.03G073758' => 'gma', 'Glyma.03G083200' => 'gma', 'Glyma.03G225500' => 'gma', 'Glyma.05G037766' => 'gma', 'Glyma.07G133500' => 'gma', 'Glyma.10G139400' => 'gma', 'Glyma.10G248900' => 'gma', 'Glyma.11G137800' => 'gma', 'Glyma.12G061300' => 'gma', 'Glyma.13G337900' => 'gma', 'Glyma.15G036600' => 'gma', 'Glyma.18G182800' => 'gma', 'Glyma.19G222500' => 'gma', 'Glyma.20G144800' => 'gma', 'Gohir.A01G222000' => 'ghi', 'Gohir.A03G044000' => 'ghi', 'Gohir.A03G044100' => 'ghi', 'Gohir.A04G083100' => 'ghi', 'Gohir.A07G127200' => 'ghi', 'Gohir.A07G132400' => 'ghi', 'Gohir.A08G000700' => 'ghi', 'Gohir.A11G327300' => 'ghi', 'Gohir.D01G211500' => 'ghi', 'Gohir.D03G123400' => 'ghi', 'Gohir.D03G123500' => 'ghi', 'Gohir.D04G121800' => 'ghi', 'Gohir.D07G131500' => 'ghi', 'Gohir.D07G136600' => 'ghi', 'Gohir.D08G011600' => 'ghi', 'Gohir.D11G346200' => 'ghi', 'Gorai.001G142800' => 'gra', 'Gorai.001G148700' => 'gra', 'Gorai.002G257300' => 'gra', 'Gorai.003G130000' => 'gra', 'Gorai.003G130100' => 'gra', 'Gorai.004G005300' => 'gra', 'Gorai.007G376500' => 'gra', 'Gorai.012G104700' => 'gra', 'GSVIVG01017946001' => 'vvi', 'GSVIVG01024928001' => 'vvi', 'GSVIVG01028227001' => 'vvi', 'GSVIVG01034151001' => 'vvi', 'HanXRQChr05g0135031' => 'han', 'HanXRQChr05g0135041' => 'han', 'HanXRQChr05g0140021' => 'han', 'HanXRQChr06g0178981' => 'han', 'HanXRQChr07g0188251' => 'han', 'HanXRQChr08g0235311' => 'han', 'HanXRQChr09g0271011' => 'han', 'HanXRQChr10g0293321' => 'han', 'HanXRQChr13g0388171' => 'han', 'Haze_00916' => 'cav', 'Haze_05063' => 'cav', 'Haze_20814' => 'cav', 'Haze_24128' => 'cav', 'Hma1.2p1_0745F.1_g212010' => 'hma', 'Hma1.2p1_0757F.1_g213260' => 'hma', 'Hma1.2p1_0936F.1_g238840' => 'hma', 'Hma1.2p1_1735F.1_g299890' => 'hma', 'Hma1.2p1_1861F.1_g305685' => 'hma', 'HPP92_003397' => 'vpl', 'HPP92_012597' => 'vpl', 'HPP92_015520' => 'vpl', 'HPP92_015539' => 'vpl', 'HPP92_020373' => 'vpl', 'Hund04938' => 'sun', 'Hund10677' => 'sun', 'Hund11033' => 'sun', 'Hund12155' => 'sun', 'Lalb_Chr01g0022551' => 'lal', 'Lalb_Chr03g0042341' => 'lal', 'Lalb_Chr07g0192931' => 'lal', 'Lalb_Chr12g0209551' => 'lal', 'Lalb_Chr19g0125251' => 'lal', 'Lalb_Chr19g0137891' => 'lal', 'Lalb_Chr21g0304641' => 'lal', 'Lalb_Chr21g0309881' => 'lal', 'Lj1A5T12' => 'lonja', 'Lj1C148G10' => 'lonja', 'Lj2A93T83' => 'lonja', 'Lj3A738G68' => 'lonja', 'Lj3C966T1' => 'lonja', 'Lj3g0018958' => 'lja', 'Lj3g0021831' => 'lja', 'Lj3g0025443' => 'lja', 'Lj4g0026809' => 'lja', 'Lj5g0012558' => 'lja', 'Lj5g0021586' => 'lja', 'Lsat_1_v5_gn_5_156840' => 'lsa', 'Lsat_1_v5_gn_8_73460' => 'lsa', 'Lsat_1_v5_gn_8_73481' => 'lsa', 'Lsat_1_v5_gn_9_31601' => 'lsa', 'Lsat_1_v5_gn_9_77320' => 'lsa', 'Manes.01G171300' => 'mes', 'Manes.01G171400' => 'mes', 'Manes.01G236100' => 'mes', 'Manes.02G130500' => 'mes', 'Manes.02G130600' => 'mes', 'Manes.03G180200' => 'mes', 'Manes.05G007000' => 'mes', 'Manes.08G084400' => 'mes', 'Manes.09G092600' => 'mes', 'Manes.15G027900' => 'mes', 'MBI04_g40948_MAGBIO' => 'mbi', 'MBI14_g12123_MAGBIO' => 'mbi', 'MBI18_g28915_MAGBIO' => 'mbi', 'MCO09G053' => 'mco', 'MCO11G782' => 'mco', 'MCO15G215' => 'mco', 'MD03G1088500' => 'mdo', 'MD03G1088600' => 'mdo', 'MD04G1130800' => 'mdo', 'MD09G1291700' => 'mdo', 'MD11G1097500' => 'mdo', 'MD11G1097600' => 'mdo', 'MD12G1143900' => 'mdo', 'MD13G1191400' => 'mdo', 'MD16G1191500' => 'mdo', 'Medtr1g085570' => 'mtr', 'Medtr1g104610' => 'mtr', 'Medtr2g097520' => 'mtr', 'Medtr4g021800' => 'mtr', 'Medtr4g021825' => 'mtr', 'Medtr4g064270' => 'mtr', 'Medtr4g064380' => 'mtr', 'Medtr7g062150' => 'mtr', 'MELO3C003138.2' => 'cme', 'MELO3C005187.2' => 'cme', 'MELO3C009252.2' => 'cme', 'MELO3C014481.2' => 'cme', 'MELO3C020616.2' => 'cme', 'MELO3C020617.2' => 'cme', 'MELO3C020618.2' => 'cme', 'Migut.G00328' => 'egut', 'Migut.J00320' => 'egut', 'Migut.L01000' => 'egut', 'Migut.L01953' => 'egut', 'MSTRG.10253' => 'ama', 'MSTRG.19077' => 'ama', 'MSTRG.26780' => 'ama', 'MSTRG.4023' => 'ama', 'MSTRG.5655' => 'ama', 'MSTRG.9992' => 'ama', 'Nitab4.5_0000043g0310' => 'nta', 'Nitab4.5_0000463g0080' => 'nta', 'Nitab4.5_0000705g0170' => 'nta', 'Nitab4.5_0001326g0060' => 'nta', 'Nitab4.5_0001628g0030' => 'nta', 'Nitab4.5_0002103g0110' => 'nta', 'Nitab4.5_0002946g0030' => 'nta', 'Nitab4.5_0004639g0030' => 'nta', 'Nn2g11149' => 'nnu', 'Nn2g13389' => 'nnu', 'Nn4g25326' => 'nnu', 'Nn4g26290' => 'nnu', 'Nn5g29865' => 'nnu', 'Oeu004163.1' => 'oeu', 'Oeu006901.1' => 'oeu', 'Oeu010096.1' => 'oeu', 'Oeu024340.1' => 'oeu', 'Oeu048369.1' => 'oeu', 'Os01g0973000' => 'osa', 'Os03g0273800' => 'osa', 'Os03g0701200' => 'osa', 'Os03g0834050' => 'osa', 'Os07g0634400' => 'osa', 'Peaxi162Scf00092g01414' => 'pax', 'Peaxi162Scf00165g00818' => 'pax', 'Peaxi162Scf00309g00516' => 'pax', 'Peaxi162Scf00774g00218' => 'pax', 'PGR004G1824' => 'pgr', 'PGR004G2606' => 'pgr', 'PGR031G2716' => 'pgr', 'PGR102G2460' => 'pgr', 'PGR142G2599' => 'pgr', 'PGSC0003DMG400000843' => 'stu', 'PGSC0003DMG400008829' => 'stu', 'PGSC0003DMG400030418' => 'stu', 'PGSC0003DMG400031834' => 'stu', 'PGSC0003DMG401028300' => 'stu', 'PGSC0003DMG402028300' => 'stu', 'Phvul.001G219300' => 'pvu', 'Phvul.007G056000' => 'pvu', 'Phvul.007G208000' => 'pvu', 'Phvul.008G119500' => 'pvu', 'Phvul.010G011200' => 'pvu', 'Phvul.010G014800' => 'pvu', 'Phvul.011G062900' => 'pvu', 'Phvul.L007043' => 'pvu', 'Potri.001G242300' => 'ptr', 'Potri.002G185300' => 'ptr', 'Potri.006G086900' => 'ptr', 'Potri.008G151700' => 'ptr', 'Potri.009G033500' => 'ptr', 'Potri.010G089300' => 'ptr', 'Potri.014G110800' => 'ptr', 'Pp3c27_8130' => 'ppa', 'Pp3c6_27410' => 'ppa', 'PRCOL_00001659' => 'pco', 'PRCOL_00001927' => 'pco', 'PRCOL_00003649' => 'pco', 'Prupe.1G011600' => 'ppe', 'Prupe.3G000800' => 'ppe', 'Prupe.3G001100' => 'ppe', 'Prupe.6G072700' => 'ppe', 'Prupe.6G072800' => 'ppe', 'Prupe.6G257300' => 'ppe', 'Prupe.8G033000' => 'ppe', 'Psat0s2633g0080' => 'psa', 'Psat0s3396g0080' => 'psa', 'Psat0s3396g0200' => 'psa', 'Psat3g139080' => 'psa', 'Psat5g285080' => 'psa', 'Psat6g157760' => 'psa', 'Psat6g208440' => 'psa', 'Psat7g215320' => 'psa', 'Psat7g215400' => 'psa', 'Psat7g235600' => 'psa', 'Psat7g235760' => 'psa', 'PSO063G4603' => 'pso', 'PSO210G0182' => 'pso', 'PSO210G0196' => 'pso', 'PSO339G0394' => 'pso', 'PSO339G4127' => 'pso', 'PSO513G0064' => 'pso', 'PSO761G0079' => 'pso', 'QL01p031003' => 'qlo', 'QL01p031078' => 'qlo', 'QL06p003004' => 'qlo', 'QL07p048731' => 'qlo', 'QL09p037427' => 'qlo', 'RcHm_v2.0_Chr3g0466361' => 'rch', 'RcHm_v2.0_Chr3g0485571' => 'rch', 'RcHm_v2.0_Chr4g0416551' => 'rch', 'RcHm_v2.0_Chr5g0065831' => 'rch', 'Rhsim01G0230500' => 'rsi', 'Rhsim05G0194000' => 'rsi', 'Rhsim08G0250400' => 'rsi', 'Sabra02G0131000' => 'sbr', 'Sabra06G0066300' => 'sbr', 'Sabra08G0115500' => 'sbr', 'Sabra09G0023900' => 'sbr', 'Sabra10G0054000' => 'sbr', 'Sabra14G0081500' => 'sbr', 'Sabra16G0147100' => 'sbr', 'SalBow2G2957' => 'sbo', 'SalBow4G3320' => 'sbo', 'SalBow8G1894' => 'sbo', 'Sc07g0007950' => 'sci', 'Sc12g0001360' => 'sci', 'Sc13g0004330' => 'sci', 'Sc20g0005010' => 'sci', 'Sed0000361' => 'sed', 'Sed0001706' => 'sed', 'Sed0002422' => 'sed', 'Sed0004029' => 'sed', 'Sed0004602' => 'sed', 'Sed0004943' => 'sed', 'Sed0008646' => 'sed', 'Sed0023313' => 'sed', 'Sed0024843' => 'sed', 'SEGI_00081' => 'sgi', 'SEGI_00947' => 'sgi', 'SEGI_04046' => 'sgi', 'SEGI_06880' => 'sgi', 'SEGI_09736' => 'sgi', 'SEGI_12741' => 'sgi', 'SEGI_14530' => 'sgi', 'SEGI_20705' => 'sgi', 'SEGI_26088' => 'sgi', 'SEGI_28323' => 'sgi', 'SEGI_33343' => 'sgi', 'SGA_v2.0_scaffold126G33775' => 'sas', 'SGA_v2.0_scaffold2G01337' => 'sas', 'SGA_v2.0_scaffold38G15006' => 'sas', 'SGA_v2.0_scaffold39G15264' => 'sas', 'SGA_v2.0_scaffold453G51880' => 'sas', 'SHI12696' => 'shi', 'SMO367G1096' => 'smo', 'Solyc01g068630.3' => 'sly', 'Solyc05g011880.3' => 'sly', 'Solyc06g076300.3' => 'sly', 'Solyc09g010940.4' => 'sly', 'Solyc09g075890.3' => 'sly', 'Sopen01g030560' => 'spe', 'Sopen05g006630' => 'spe', 'Sopen06g032720' => 'spe', 'Sopen09g005660' => 'spe', 'Sopen09g030690' => 'spe', 'Sp4g14540' => 'spa', 'Sp4g20030' => 'spa', 'Sp5g01320' => 'spa', 'Sp6g21170' => 'spa', 'Sp6g21180' => 'spa', 'Sp6g21190' => 'spa', 'Sp6g40220' => 'spa', 'TAR362G0122' => 'tar', 'TAR362G1338' => 'tar', 'TAR369G0590' => 'tar', 'TAR371G0824' => 'tar', 'TAR622G1429' => 'tar', 'TAR623G0734' => 'tar', 'TAR625G0441' => 'tar', 'TAR629G0976' => 'tar', 'TAR633G1195' => 'tar', 'TAR636G2660' => 'tar', 'THA.LOC104799440' => 'tha', 'THA.LOC104800966' => 'tha', 'THA.LOC104806559' => 'tha', 'THA.LOC104810765' => 'tha', 'THA.LOC104816266' => 'tha', 'THA.LOC104817419' => 'tha', 'THA.LOC104827021' => 'tha', 'Thecc.01G327400' => 'tca', 'Thecc.04G229200' => 'tca', 'Thecc.05G037400' => 'tca', 'Thecc.09G318600' => 'tca', 'Thecc.09G318700' => 'tca', 'Thhalv10006238m.g' => 'esa', 'Thhalv10014321m.g' => 'esa', 'Thhalv10014335m.g' => 'esa', 'Thhalv10015826m.g' => 'esa', 'Thhalv10017107m.g' => 'esa', 'Thhalv10017180m.g' => 'esa', 'Thhalv10029339m.g' => 'esa', 'TPR.G1699' => 'tpr', 'TPR.G23609' => 'tpr', 'TPR.G3081' => 'tpr', 'TPR.G40397' => 'tpr', 'TPR.G5522' => 'tpr', 'TPR.G5618' => 'tpr', 'TPR.G5626' => 'tpr', 'TWI09G1632' => 'twi', 'TWI23G1230' => 'twi', 'TWI53G1064' => 'twi', 'TWI59G0751' => 'twi', 'TWI74G0947' => 'twi', 'TWI77G0337' => 'twi', 'TWI79G1254' => 'twi', 'unitig_0.g2341' => 'ugi', 'unitig_26.g10006' => 'ugi', 'unitig_26.g10008' => 'ugi', 'unitig_26.g9192' => 'ugi', 'vmacro14547' => 'vma', 'vmacro15333' => 'vma', 'vmacro18743' => 'vma', 'vmacro20166' => 'vma', 'VMungo0331G0523' => 'vmu', 'VMungo0331G1202' => 'vmu', 'VMungo0720G1228' => 'vmu', 'VMungo0720G1514' => 'vmu', 'VMungo1080G0169' => 'vmu', 'VMungo1127G1475' => 'vmu', 'VMungo1383G1208' => 'vmu', 'VMungo1383G1698' => 'vmu', 'Zm00001eb012270' => 'zma', 'Zm00001eb054100' => 'zma', 'Zm00001eb063350' => 'zma', 'Zm00001eb328560' => 'zma', 'Zm00001eb342820' => 'zma', 'Zm00001eb362210' => 'zma', 'Zm00001eb397730' => 'zma', 'Zm00001eb399750' => 'zma' ) $gf_id = 'HOM05D000959' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000959' ) $data_identifier = 'HOM05D000959' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 5, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 5, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 10, 'mbi' => (int) 3, 'mco' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 2, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 3, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 11, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399750' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000959', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '622', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p07100' => 'bna', 'A03p11720' => 'bna', 'A05p08300' => 'bna', 'A05p13380' => 'bna', 'A09p54130' => 'bna', 'A10p16690' => 'bna', 'A10p16700' => 'bna', 'A10p33390' => 'bna', 'Aa31LG10G16020' => 'aar', 'Aa31LG1G11810' => 'aar', 'Aa31LG1G11830' => 'aar', 'Aa31LG1G22510' => 'aar', 'Aa31LG5G4890' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5793' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2310' => 'aag', 'Actinidia08499' => 'ach', 'Actinidia11262' => 'ach', 'Actinidia23926' => 'ach', 'Actinidia34420' => 'ach', 'Actinidia36970' => 'ach', 'Ah.02g111220' => 'amhyb', 'Ah.15g097750' => 'amhyb', 'AL4G27500' => 'aly', 'AL6G11470' => 'aly', 'AL8G35950' => 'aly', 'AL8G35960' => 'aly', 'AL8G35970' => 'aly', 'Aqoxy1G00912' => 'aox', 'Aqoxy2G02253' => 'aox', 'Aqoxy2G02411' => 'aox', 'Aqoxy5G00485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BZ66YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K8ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM4FUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6BF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HFV7XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25JBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0YNNV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MAKK6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P70IT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP2Z6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V61LZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YWP64R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3S9AI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7PGHH' => 'arhy', 'AT2G32150' => 'ath', 'AT3G62040' => 'ath', 'AT5G02230' => 'ath', 'AT5G59480' => 'ath', 'AT5G59490' => 'ath', 'ATR0332G060' => 'atr', 'ATR0559G190' => 'atr', 'ATR0693G294' => 'atr', 'Atru.chr3.3975' => 'acertr', 'Atru.chr3.3976' => 'acertr', 'Atru.chr3.3977' => 'acertr', 'Atru.chr4.2498' => 'acertr', 'Atru.chr5.838' => 'acertr', 'Atru.chr8.1990' => 'acertr', 'Atru.chr8.1991' => 'acertr', 'Atru.chr8.1992' => 'acertr', 'AUR62001759' => 'cqu', 'AUR62009545' => 'cqu', 'AUR62010474' => 'cqu', 'AUR62025820' => 'cqu', 'AUR62030422' => 'cqu', 'AUR62033605' => 'cqu', 'AUR62038615' => 'cqu', 'AUR62041347' => 'cqu', 'BcaB01g04574' => 'bca', 'BcaB02g09263' => 'bca', 'BcaB02g10453' => 'bca', 'BcaB05g22513' => 'bca', 'BcaB08g36253' => 'bca', 'BcaB08g36254' => 'bca', 'BcaC01g06519' => 'bca', 'BcaC02g11889' => 'bca', 'BcaC03g14010' => 'bca', 'BcaC03g18439' => 'bca', 'BcaC04g19765' => 'bca', 'BcaC09g48432' => 'bca', 'BcaNung07302' => 'bca', 'BolC2t06040H' => 'bol', 'BolC2t07346H' => 'bol', 'BolC3t13817H' => 'bol', 'BolC4t22625H' => 'bol', 'BolC4t23297H' => 'bol', 'BolC8t51278H' => 'bol', 'BolC9t58050H' => 'bol', 'BolC9t58051H' => 'bol', 'BolC9t60163H' => 'bol', 'BraA02t04712Z' => 'bra', 'BraA02t05791Z' => 'bra', 'BraA03t10483Z' => 'bra', 'BraA05t19795Z' => 'bra', 'BraA05t20276Z' => 'bra', 'BraA09t40827Z' => 'bra', 'BraA10t43750Z' => 'bra', 'BraA10t43751Z' => 'bra', 'BraA10t45370Z' => 'bra', 'C02p00400' => 'bna', 'C02p12460' => 'bna', 'C03p13680' => 'bna', 'C04p10270' => 'bna', 'C04p17500' => 'bna', 'C08p37010' => 'bna', 'C09p51880' => 'bna', 'C09p51890' => 'bna', 'C09p74300' => 'bna', 'CAN.G179.26' => 'can', 'CAN.G3384.1' => 'can', 'CAN.G394.68' => 'can', 'CAN.G907.13' => 'can', 'CANSAT11G0012' => 'cansat', 'CANSAT25G1586' => 'cansat', 'CANSAT35G0735' => 'cansat', 'CANSAT54G0556' => 'cansat', 'CANSAT64G0356' => 'cansat', 'CANSAT78G2042' => 'cansat', 'CARHR125920' => 'chi', 'CARHR131910' => 'chi', 'CARHR172390' => 'chi', 'CARHR211140' => 'chi', 'CARHR285850' => 'chi', 'CARHR285860' => 'chi', 'Carub.0004s1347' => 'cru', 'Carub.0004s1960' => 'cru', 'Carub.0005s2880' => 'cru', 'Carub.0006s0107' => 'cru', 'Carub.0008s2015' => 'cru', 'Carub.0008s2016' => 'cru', 'Carub.0008s2017' => 'cru', 'Ca_01315_v3' => 'car', 'Ca_05063_v3' => 'car', 'Ca_10231_v3' => 'car', 'Ca_10913_v3' => 'car', 'Ca_19156_v3' => 'car', 'Ca_23644_v3' => 'car', 'Ca_26735_v3' => 'car', 'Cc01_g13130' => 'ccan', 'Cc02_g21690' => 'ccan', 'Cc03_g03600' => 'ccan', 'Cc06_g02510' => 'ccan', 'CDE02G1265' => 'cde', 'CDE05G0415' => 'cde', 'CDE08G1082' => 'cde', 'Cfa005780' => 'cfa', 'Cfa011522' => 'cfa', 'Cfa011523' => 'cfa', 'Cfa015627' => 'cfa', 'Cfa017359' => 'cfa', 'Ciclev10005687m.g' => 'ccl', 'Ciclev10012173m.g' => 'ccl', 'Ciclev10021621m.g' => 'ccl', 'Ciclev10028968m.g' => 'ccl', 'Ciclev10029907m.g' => 'ccl', 'CiPaw.01G164800' => 'cil', 'CiPaw.07G083700' => 'cil', 'CiPaw.07G127000' => 'cil', 'CiPaw.07G136900' => 'cil', 'CiPaw.08G081700' => 'cil', 'CiPaw.09G194600' => 'cil', 'CiPaw.10G146500' => 'cil', 'CiPaw.13G091500' => 'cil', 'CiPaw.13G091600' => 'cil', 'ClCG00G003390' => 'cla', 'ClCG01G007220' => 'cla', 'ClCG03G001370' => 'cla', 'ClCG04G008100' => 'cla', 'ClCG06G006110' => 'cla', 'ClCG06G006130' => 'cla', 'ClCG10G021210' => 'cla', 'COL.COLO4_07648' => 'col', 'COL.COLO4_07650' => 'col', 'COL.COLO4_07651' => 'col', 'COL.COLO4_14780' => 'col', 'COL.COLO4_18546' => 'col', 'COL.COLO4_18547' => 'col', 'COL.COLO4_23103' => 'col', 'COL.COLO4_30419' => 'col', 'COL.COLO4_34232' => 'col', 'Cpa.g.sc169.20' => 'cpa', 'Cpa.g.sc57.45' => 'cpa', 'Cpa.g.sc58.124' => 'cpa', 'Cpa.g.sc58.125' => 'cpa', 'Cpa.g.sc81.118' => 'cpa', 'Cpa.g.sc81.119' => 'cpa', 'Cre12.g524700' => 'cre', 'CsaV3_1G034430' => 'csa', 'CsaV3_1G034440' => 'csa', 'CsaV3_1G034450' => 'csa', 'CsaV3_3G034830' => 'csa', 'CsaV3_4G025090' => 'csa', 'CsaV3_5G018660' => 'csa', 'CsaV3_6G038160' => 'csa', 'CSS0003447' => 'camsi', 'CSS0017840' => 'camsi', 'CSS0019260' => 'camsi', 'CSS0040375' => 'camsi', 'CSS0042533' => 'camsi', 'DCAR_005960' => 'dca', 'DCAR_012104' => 'dca', 'DCAR_012105' => 'dca', 'DCAR_012293' => 'dca', 'DCAR_015632' => 'dca', 'DCAR_024602' => 'dca', 'DCAR_028752' => 'dca', 'Dinv06261' => 'din', 'Dinv13982' => 'din', 'Dinv17029' => 'din', 'Dinv18463' => 'din', 'Dinv33181' => 'din', 'Dinv35585' => 'din', 'Dinv37161' => 'din', 'Dinv42977' => 'din', 'Dinv43122' => 'din', 'Dinv44517' => 'din', 'Duzib093G0256' => 'dzi', 'Duzib106G1254' => 'dzi', 'Duzib128G1789' => 'dzi', 'Duzib133G0633' => 'dzi', 'Duzib138G0510' => 'dzi', 'Duzib150G1084' => 'dzi', 'Duzib168G0488' => 'dzi', 'Duzib168G1523' => 'dzi', 'Duzib170G0133' => 'dzi', 'ECA234G1433' => 'eca', 'ECA236G1432' => 'eca', 'ECA236G2256' => 'eca', 'ECA236G2365' => 'eca', 'ECA236G4830' => 'eca', 'ECA248G1505' => 'eca', 'EL10Ac3g06431' => 'bvu', 'EL10Ac5g12577' => 'bvu', 'EL10Ac6g13533' => 'bvu', 'EL10Ac7g16045' => 'bvu', 'Eucgr.A01281' => 'egr', 'Eucgr.B02326' => 'egr', 'Eucgr.H03532' => 'egr', 'Eucgr.K00553' => 'egr', 'Eucgr.K03116' => 'egr', 'FAN02G3963' => 'fan', 'FAN05G0438' => 'fan', 'FAN09G2434' => 'fan', 'FAN12G3984' => 'fan', 'FAN14G0798' => 'fan', 'FAN17G0652' => 'fan', 'FAN19G1988' => 'fan', 'FAN22G0632' => 'fan', 'FAN23G0387' => 'fan', 'FAN26G1323' => 'fan', 'FAN28G0666' => 'fan', 'FvH4_1g26080' => 'fve', 'FvH4_3g36780' => 'fve', 'FvH4_4g15270' => 'fve', 'FvH4_6g13490' => 'fve', 'Glyma.01G098700' => 'gma', 'Glyma.03G065900' => 'gma', 'Glyma.03G073754' => 'gma', 'Glyma.03G073758' => 'gma', 'Glyma.03G083200' => 'gma', 'Glyma.03G225500' => 'gma', 'Glyma.05G037766' => 'gma', 'Glyma.07G133500' => 'gma', 'Glyma.10G139400' => 'gma', 'Glyma.10G248900' => 'gma', 'Glyma.11G137800' => 'gma', 'Glyma.12G061300' => 'gma', 'Glyma.13G337900' => 'gma', 'Glyma.15G036600' => 'gma', 'Glyma.18G182800' => 'gma', 'Glyma.19G222500' => 'gma', 'Glyma.20G144800' => 'gma', 'Gohir.A01G222000' => 'ghi', 'Gohir.A03G044000' => 'ghi', 'Gohir.A03G044100' => 'ghi', 'Gohir.A04G083100' => 'ghi', 'Gohir.A07G127200' => 'ghi', 'Gohir.A07G132400' => 'ghi', 'Gohir.A08G000700' => 'ghi', 'Gohir.A11G327300' => 'ghi', 'Gohir.D01G211500' => 'ghi', 'Gohir.D03G123400' => 'ghi', 'Gohir.D03G123500' => 'ghi', 'Gohir.D04G121800' => 'ghi', 'Gohir.D07G131500' => 'ghi', 'Gohir.D07G136600' => 'ghi', 'Gohir.D08G011600' => 'ghi', 'Gohir.D11G346200' => 'ghi', 'Gorai.001G142800' => 'gra', 'Gorai.001G148700' => 'gra', 'Gorai.002G257300' => 'gra', 'Gorai.003G130000' => 'gra', 'Gorai.003G130100' => 'gra', 'Gorai.004G005300' => 'gra', 'Gorai.007G376500' => 'gra', 'Gorai.012G104700' => 'gra', 'GSVIVG01017946001' => 'vvi', 'GSVIVG01024928001' => 'vvi', 'GSVIVG01028227001' => 'vvi', 'GSVIVG01034151001' => 'vvi', 'HanXRQChr05g0135031' => 'han', 'HanXRQChr05g0135041' => 'han', 'HanXRQChr05g0140021' => 'han', 'HanXRQChr06g0178981' => 'han', 'HanXRQChr07g0188251' => 'han', 'HanXRQChr08g0235311' => 'han', 'HanXRQChr09g0271011' => 'han', 'HanXRQChr10g0293321' => 'han', 'HanXRQChr13g0388171' => 'han', 'Haze_00916' => 'cav', 'Haze_05063' => 'cav', 'Haze_20814' => 'cav', 'Haze_24128' => 'cav', 'Hma1.2p1_0745F.1_g212010' => 'hma', 'Hma1.2p1_0757F.1_g213260' => 'hma', 'Hma1.2p1_0936F.1_g238840' => 'hma', 'Hma1.2p1_1735F.1_g299890' => 'hma', 'Hma1.2p1_1861F.1_g305685' => 'hma', 'HPP92_003397' => 'vpl', 'HPP92_012597' => 'vpl', 'HPP92_015520' => 'vpl', 'HPP92_015539' => 'vpl', 'HPP92_020373' => 'vpl', 'Hund04938' => 'sun', 'Hund10677' => 'sun', 'Hund11033' => 'sun', 'Hund12155' => 'sun', 'Lalb_Chr01g0022551' => 'lal', 'Lalb_Chr03g0042341' => 'lal', 'Lalb_Chr07g0192931' => 'lal', 'Lalb_Chr12g0209551' => 'lal', 'Lalb_Chr19g0125251' => 'lal', 'Lalb_Chr19g0137891' => 'lal', 'Lalb_Chr21g0304641' => 'lal', 'Lalb_Chr21g0309881' => 'lal', 'Lj1A5T12' => 'lonja', 'Lj1C148G10' => 'lonja', 'Lj2A93T83' => 'lonja', 'Lj3A738G68' => 'lonja', 'Lj3C966T1' => 'lonja', 'Lj3g0018958' => 'lja', 'Lj3g0021831' => 'lja', 'Lj3g0025443' => 'lja', 'Lj4g0026809' => 'lja', 'Lj5g0012558' => 'lja', 'Lj5g0021586' => 'lja', 'Lsat_1_v5_gn_5_156840' => 'lsa', 'Lsat_1_v5_gn_8_73460' => 'lsa', 'Lsat_1_v5_gn_8_73481' => 'lsa', 'Lsat_1_v5_gn_9_31601' => 'lsa', 'Lsat_1_v5_gn_9_77320' => 'lsa', 'Manes.01G171300' => 'mes', 'Manes.01G171400' => 'mes', 'Manes.01G236100' => 'mes', 'Manes.02G130500' => 'mes', 'Manes.02G130600' => 'mes', 'Manes.03G180200' => 'mes', 'Manes.05G007000' => 'mes', 'Manes.08G084400' => 'mes', 'Manes.09G092600' => 'mes', 'Manes.15G027900' => 'mes', 'MBI04_g40948_MAGBIO' => 'mbi', 'MBI14_g12123_MAGBIO' => 'mbi', 'MBI18_g28915_MAGBIO' => 'mbi', 'MCO09G053' => 'mco', 'MCO11G782' => 'mco', 'MCO15G215' => 'mco', 'MD03G1088500' => 'mdo', 'MD03G1088600' => 'mdo', 'MD04G1130800' => 'mdo', 'MD09G1291700' => 'mdo', 'MD11G1097500' => 'mdo', 'MD11G1097600' => 'mdo', 'MD12G1143900' => 'mdo', 'MD13G1191400' => 'mdo', 'MD16G1191500' => 'mdo', 'Medtr1g085570' => 'mtr', 'Medtr1g104610' => 'mtr', 'Medtr2g097520' => 'mtr', 'Medtr4g021800' => 'mtr', 'Medtr4g021825' => 'mtr', 'Medtr4g064270' => 'mtr', 'Medtr4g064380' => 'mtr', 'Medtr7g062150' => 'mtr', 'MELO3C003138.2' => 'cme', 'MELO3C005187.2' => 'cme', 'MELO3C009252.2' => 'cme', 'MELO3C014481.2' => 'cme', 'MELO3C020616.2' => 'cme', 'MELO3C020617.2' => 'cme', 'MELO3C020618.2' => 'cme', 'Migut.G00328' => 'egut', 'Migut.J00320' => 'egut', 'Migut.L01000' => 'egut', 'Migut.L01953' => 'egut', 'MSTRG.10253' => 'ama', 'MSTRG.19077' => 'ama', 'MSTRG.26780' => 'ama', 'MSTRG.4023' => 'ama', 'MSTRG.5655' => 'ama', 'MSTRG.9992' => 'ama', 'Nitab4.5_0000043g0310' => 'nta', 'Nitab4.5_0000463g0080' => 'nta', 'Nitab4.5_0000705g0170' => 'nta', 'Nitab4.5_0001326g0060' => 'nta', 'Nitab4.5_0001628g0030' => 'nta', 'Nitab4.5_0002103g0110' => 'nta', 'Nitab4.5_0002946g0030' => 'nta', 'Nitab4.5_0004639g0030' => 'nta', 'Nn2g11149' => 'nnu', 'Nn2g13389' => 'nnu', 'Nn4g25326' => 'nnu', 'Nn4g26290' => 'nnu', 'Nn5g29865' => 'nnu', 'Oeu004163.1' => 'oeu', 'Oeu006901.1' => 'oeu', 'Oeu010096.1' => 'oeu', 'Oeu024340.1' => 'oeu', 'Oeu048369.1' => 'oeu', 'Os01g0973000' => 'osa', 'Os03g0273800' => 'osa', 'Os03g0701200' => 'osa', 'Os03g0834050' => 'osa', 'Os07g0634400' => 'osa', 'Peaxi162Scf00092g01414' => 'pax', 'Peaxi162Scf00165g00818' => 'pax', 'Peaxi162Scf00309g00516' => 'pax', 'Peaxi162Scf00774g00218' => 'pax', 'PGR004G1824' => 'pgr', 'PGR004G2606' => 'pgr', 'PGR031G2716' => 'pgr', 'PGR102G2460' => 'pgr', 'PGR142G2599' => 'pgr', 'PGSC0003DMG400000843' => 'stu', 'PGSC0003DMG400008829' => 'stu', 'PGSC0003DMG400030418' => 'stu', 'PGSC0003DMG400031834' => 'stu', 'PGSC0003DMG401028300' => 'stu', 'PGSC0003DMG402028300' => 'stu', 'Phvul.001G219300' => 'pvu', 'Phvul.007G056000' => 'pvu', 'Phvul.007G208000' => 'pvu', 'Phvul.008G119500' => 'pvu', 'Phvul.010G011200' => 'pvu', 'Phvul.010G014800' => 'pvu', 'Phvul.011G062900' => 'pvu', 'Phvul.L007043' => 'pvu', 'Potri.001G242300' => 'ptr', 'Potri.002G185300' => 'ptr', 'Potri.006G086900' => 'ptr', 'Potri.008G151700' => 'ptr', 'Potri.009G033500' => 'ptr', 'Potri.010G089300' => 'ptr', 'Potri.014G110800' => 'ptr', 'Pp3c27_8130' => 'ppa', 'Pp3c6_27410' => 'ppa', 'PRCOL_00001659' => 'pco', 'PRCOL_00001927' => 'pco', 'PRCOL_00003649' => 'pco', 'Prupe.1G011600' => 'ppe', 'Prupe.3G000800' => 'ppe', 'Prupe.3G001100' => 'ppe', 'Prupe.6G072700' => 'ppe', 'Prupe.6G072800' => 'ppe', 'Prupe.6G257300' => 'ppe', 'Prupe.8G033000' => 'ppe', 'Psat0s2633g0080' => 'psa', 'Psat0s3396g0080' => 'psa', 'Psat0s3396g0200' => 'psa', 'Psat3g139080' => 'psa', 'Psat5g285080' => 'psa', 'Psat6g157760' => 'psa', 'Psat6g208440' => 'psa', 'Psat7g215320' => 'psa', 'Psat7g215400' => 'psa', 'Psat7g235600' => 'psa', 'Psat7g235760' => 'psa', 'PSO063G4603' => 'pso', 'PSO210G0182' => 'pso', 'PSO210G0196' => 'pso', 'PSO339G0394' => 'pso', 'PSO339G4127' => 'pso', 'PSO513G0064' => 'pso', 'PSO761G0079' => 'pso', 'QL01p031003' => 'qlo', 'QL01p031078' => 'qlo', 'QL06p003004' => 'qlo', 'QL07p048731' => 'qlo', 'QL09p037427' => 'qlo', 'RcHm_v2.0_Chr3g0466361' => 'rch', 'RcHm_v2.0_Chr3g0485571' => 'rch', 'RcHm_v2.0_Chr4g0416551' => 'rch', 'RcHm_v2.0_Chr5g0065831' => 'rch', 'Rhsim01G0230500' => 'rsi', 'Rhsim05G0194000' => 'rsi', 'Rhsim08G0250400' => 'rsi', 'Sabra02G0131000' => 'sbr', 'Sabra06G0066300' => 'sbr', 'Sabra08G0115500' => 'sbr', 'Sabra09G0023900' => 'sbr', 'Sabra10G0054000' => 'sbr', 'Sabra14G0081500' => 'sbr', 'Sabra16G0147100' => 'sbr', 'SalBow2G2957' => 'sbo', 'SalBow4G3320' => 'sbo', 'SalBow8G1894' => 'sbo', 'Sc07g0007950' => 'sci', 'Sc12g0001360' => 'sci', 'Sc13g0004330' => 'sci', 'Sc20g0005010' => 'sci', 'Sed0000361' => 'sed', 'Sed0001706' => 'sed', 'Sed0002422' => 'sed', 'Sed0004029' => 'sed', 'Sed0004602' => 'sed', 'Sed0004943' => 'sed', 'Sed0008646' => 'sed', 'Sed0023313' => 'sed', 'Sed0024843' => 'sed', 'SEGI_00081' => 'sgi', 'SEGI_00947' => 'sgi', 'SEGI_04046' => 'sgi', 'SEGI_06880' => 'sgi', 'SEGI_09736' => 'sgi', 'SEGI_12741' => 'sgi', 'SEGI_14530' => 'sgi', 'SEGI_20705' => 'sgi', 'SEGI_26088' => 'sgi', 'SEGI_28323' => 'sgi', 'SEGI_33343' => 'sgi', 'SGA_v2.0_scaffold126G33775' => 'sas', 'SGA_v2.0_scaffold2G01337' => 'sas', 'SGA_v2.0_scaffold38G15006' => 'sas', 'SGA_v2.0_scaffold39G15264' => 'sas', 'SGA_v2.0_scaffold453G51880' => 'sas', 'SHI12696' => 'shi', 'SMO367G1096' => 'smo', 'Solyc01g068630.3' => 'sly', 'Solyc05g011880.3' => 'sly', 'Solyc06g076300.3' => 'sly', 'Solyc09g010940.4' => 'sly', 'Solyc09g075890.3' => 'sly', 'Sopen01g030560' => 'spe', 'Sopen05g006630' => 'spe', 'Sopen06g032720' => 'spe', 'Sopen09g005660' => 'spe', 'Sopen09g030690' => 'spe', 'Sp4g14540' => 'spa', 'Sp4g20030' => 'spa', 'Sp5g01320' => 'spa', 'Sp6g21170' => 'spa', 'Sp6g21180' => 'spa', 'Sp6g21190' => 'spa', 'Sp6g40220' => 'spa', 'TAR362G0122' => 'tar', 'TAR362G1338' => 'tar', 'TAR369G0590' => 'tar', 'TAR371G0824' => 'tar', 'TAR622G1429' => 'tar', 'TAR623G0734' => 'tar', 'TAR625G0441' => 'tar', 'TAR629G0976' => 'tar', 'TAR633G1195' => 'tar', 'TAR636G2660' => 'tar', 'THA.LOC104799440' => 'tha', 'THA.LOC104800966' => 'tha', 'THA.LOC104806559' => 'tha', 'THA.LOC104810765' => 'tha', 'THA.LOC104816266' => 'tha', 'THA.LOC104817419' => 'tha', 'THA.LOC104827021' => 'tha', 'Thecc.01G327400' => 'tca', 'Thecc.04G229200' => 'tca', 'Thecc.05G037400' => 'tca', 'Thecc.09G318600' => 'tca', 'Thecc.09G318700' => 'tca', 'Thhalv10006238m.g' => 'esa', 'Thhalv10014321m.g' => 'esa', 'Thhalv10014335m.g' => 'esa', 'Thhalv10015826m.g' => 'esa', 'Thhalv10017107m.g' => 'esa', 'Thhalv10017180m.g' => 'esa', 'Thhalv10029339m.g' => 'esa', 'TPR.G1699' => 'tpr', 'TPR.G23609' => 'tpr', 'TPR.G3081' => 'tpr', 'TPR.G40397' => 'tpr', 'TPR.G5522' => 'tpr', 'TPR.G5618' => 'tpr', 'TPR.G5626' => 'tpr', 'TWI09G1632' => 'twi', 'TWI23G1230' => 'twi', 'TWI53G1064' => 'twi', 'TWI59G0751' => 'twi', 'TWI74G0947' => 'twi', 'TWI77G0337' => 'twi', 'TWI79G1254' => 'twi', 'unitig_0.g2341' => 'ugi', 'unitig_26.g10006' => 'ugi', 'unitig_26.g10008' => 'ugi', 'unitig_26.g9192' => 'ugi', 'vmacro14547' => 'vma', 'vmacro15333' => 'vma', 'vmacro18743' => 'vma', 'vmacro20166' => 'vma', 'VMungo0331G0523' => 'vmu', 'VMungo0331G1202' => 'vmu', 'VMungo0720G1228' => 'vmu', 'VMungo0720G1514' => 'vmu', 'VMungo1080G0169' => 'vmu', 'VMungo1127G1475' => 'vmu', 'VMungo1383G1208' => 'vmu', 'VMungo1383G1698' => 'vmu', 'Zm00001eb012270' => 'zma', 'Zm00001eb054100' => 'zma', 'Zm00001eb063350' => 'zma', 'Zm00001eb328560' => 'zma', 'Zm00001eb342820' => 'zma', 'Zm00001eb362210' => 'zma', 'Zm00001eb397730' => 'zma', 'Zm00001eb399750' => 'zma' ), 'gf_id' => 'HOM05D000959', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000959' ), 'data_identifier' => 'HOM05D000959', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000959', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '622', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p07100' => 'bna', 'A03p11720' => 'bna', 'A05p08300' => 'bna', 'A05p13380' => 'bna', 'A09p54130' => 'bna', 'A10p16690' => 'bna', 'A10p16700' => 'bna', 'A10p33390' => 'bna', 'Aa31LG10G16020' => 'aar', 'Aa31LG1G11810' => 'aar', 'Aa31LG1G11830' => 'aar', 'Aa31LG1G22510' => 'aar', 'Aa31LG5G4890' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5793' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2310' => 'aag', 'Actinidia08499' => 'ach', 'Actinidia11262' => 'ach', 'Actinidia23926' => 'ach', 'Actinidia34420' => 'ach', 'Actinidia36970' => 'ach', 'Ah.02g111220' => 'amhyb', 'Ah.15g097750' => 'amhyb', 'AL4G27500' => 'aly', 'AL6G11470' => 'aly', 'AL8G35950' => 'aly', 'AL8G35960' => 'aly', 'AL8G35970' => 'aly', 'Aqoxy1G00912' => 'aox', 'Aqoxy2G02253' => 'aox', 'Aqoxy2G02411' => 'aox', 'Aqoxy5G00485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BZ66YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K8ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM4FUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6BF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HFV7XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25JBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0YNNV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MAKK6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P70IT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP2Z6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V61LZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YWP64R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3S9AI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7PGHH' => 'arhy', 'AT2G32150' => 'ath', 'AT3G62040' => 'ath', 'AT5G02230' => 'ath', 'AT5G59480' => 'ath', 'AT5G59490' => 'ath', 'ATR0332G060' => 'atr', 'ATR0559G190' => 'atr', 'ATR0693G294' => 'atr', 'Atru.chr3.3975' => 'acertr', 'Atru.chr3.3976' => 'acertr', 'Atru.chr3.3977' => 'acertr', 'Atru.chr4.2498' => 'acertr', 'Atru.chr5.838' => 'acertr', 'Atru.chr8.1990' => 'acertr', 'Atru.chr8.1991' => 'acertr', 'Atru.chr8.1992' => 'acertr', 'AUR62001759' => 'cqu', 'AUR62009545' => 'cqu', 'AUR62010474' => 'cqu', 'AUR62025820' => 'cqu', 'AUR62030422' => 'cqu', 'AUR62033605' => 'cqu', 'AUR62038615' => 'cqu', 'AUR62041347' => 'cqu', 'BcaB01g04574' => 'bca', 'BcaB02g09263' => 'bca', 'BcaB02g10453' => 'bca', 'BcaB05g22513' => 'bca', 'BcaB08g36253' => 'bca', 'BcaB08g36254' => 'bca', 'BcaC01g06519' => 'bca', 'BcaC02g11889' => 'bca', 'BcaC03g14010' => 'bca', 'BcaC03g18439' => 'bca', 'BcaC04g19765' => 'bca', 'BcaC09g48432' => 'bca', 'BcaNung07302' => 'bca', 'BolC2t06040H' => 'bol', 'BolC2t07346H' => 'bol', 'BolC3t13817H' => 'bol', 'BolC4t22625H' => 'bol', 'BolC4t23297H' => 'bol', 'BolC8t51278H' => 'bol', 'BolC9t58050H' => 'bol', 'BolC9t58051H' => 'bol', 'BolC9t60163H' => 'bol', 'BraA02t04712Z' => 'bra', 'BraA02t05791Z' => 'bra', 'BraA03t10483Z' => 'bra', 'BraA05t19795Z' => 'bra', 'BraA05t20276Z' => 'bra', 'BraA09t40827Z' => 'bra', 'BraA10t43750Z' => 'bra', 'BraA10t43751Z' => 'bra', 'BraA10t45370Z' => 'bra', 'C02p00400' => 'bna', 'C02p12460' => 'bna', 'C03p13680' => 'bna', 'C04p10270' => 'bna', 'C04p17500' => 'bna', 'C08p37010' => 'bna', 'C09p51880' => 'bna', 'C09p51890' => 'bna', 'C09p74300' => 'bna', 'CAN.G179.26' => 'can', 'CAN.G3384.1' => 'can', 'CAN.G394.68' => 'can', 'CAN.G907.13' => 'can', 'CANSAT11G0012' => 'cansat', 'CANSAT25G1586' => 'cansat', 'CANSAT35G0735' => 'cansat', 'CANSAT54G0556' => 'cansat', 'CANSAT64G0356' => 'cansat', 'CANSAT78G2042' => 'cansat', 'CARHR125920' => 'chi', 'CARHR131910' => 'chi', 'CARHR172390' => 'chi', 'CARHR211140' => 'chi', 'CARHR285850' => 'chi', 'CARHR285860' => 'chi', 'Carub.0004s1347' => 'cru', 'Carub.0004s1960' => 'cru', 'Carub.0005s2880' => 'cru', 'Carub.0006s0107' => 'cru', 'Carub.0008s2015' => 'cru', 'Carub.0008s2016' => 'cru', 'Carub.0008s2017' => 'cru', 'Ca_01315_v3' => 'car', 'Ca_05063_v3' => 'car', 'Ca_10231_v3' => 'car', 'Ca_10913_v3' => 'car', 'Ca_19156_v3' => 'car', 'Ca_23644_v3' => 'car', 'Ca_26735_v3' => 'car', 'Cc01_g13130' => 'ccan', 'Cc02_g21690' => 'ccan', 'Cc03_g03600' => 'ccan', 'Cc06_g02510' => 'ccan', 'CDE02G1265' => 'cde', 'CDE05G0415' => 'cde', 'CDE08G1082' => 'cde', 'Cfa005780' => 'cfa', 'Cfa011522' => 'cfa', 'Cfa011523' => 'cfa', 'Cfa015627' => 'cfa', 'Cfa017359' => 'cfa', 'Ciclev10005687m.g' => 'ccl', 'Ciclev10012173m.g' => 'ccl', 'Ciclev10021621m.g' => 'ccl', 'Ciclev10028968m.g' => 'ccl', 'Ciclev10029907m.g' => 'ccl', 'CiPaw.01G164800' => 'cil', 'CiPaw.07G083700' => 'cil', 'CiPaw.07G127000' => 'cil', 'CiPaw.07G136900' => 'cil', 'CiPaw.08G081700' => 'cil', 'CiPaw.09G194600' => 'cil', 'CiPaw.10G146500' => 'cil', 'CiPaw.13G091500' => 'cil', 'CiPaw.13G091600' => 'cil', 'ClCG00G003390' => 'cla', 'ClCG01G007220' => 'cla', 'ClCG03G001370' => 'cla', 'ClCG04G008100' => 'cla', 'ClCG06G006110' => 'cla', 'ClCG06G006130' => 'cla', 'ClCG10G021210' => 'cla', 'COL.COLO4_07648' => 'col', 'COL.COLO4_07650' => 'col', 'COL.COLO4_07651' => 'col', 'COL.COLO4_14780' => 'col', 'COL.COLO4_18546' => 'col', 'COL.COLO4_18547' => 'col', 'COL.COLO4_23103' => 'col', 'COL.COLO4_30419' => 'col', 'COL.COLO4_34232' => 'col', 'Cpa.g.sc169.20' => 'cpa', 'Cpa.g.sc57.45' => 'cpa', 'Cpa.g.sc58.124' => 'cpa', 'Cpa.g.sc58.125' => 'cpa', 'Cpa.g.sc81.118' => 'cpa', 'Cpa.g.sc81.119' => 'cpa', 'Cre12.g524700' => 'cre', 'CsaV3_1G034430' => 'csa', 'CsaV3_1G034440' => 'csa', 'CsaV3_1G034450' => 'csa', 'CsaV3_3G034830' => 'csa', 'CsaV3_4G025090' => 'csa', 'CsaV3_5G018660' => 'csa', 'CsaV3_6G038160' => 'csa', 'CSS0003447' => 'camsi', 'CSS0017840' => 'camsi', 'CSS0019260' => 'camsi', 'CSS0040375' => 'camsi', 'CSS0042533' => 'camsi', 'DCAR_005960' => 'dca', 'DCAR_012104' => 'dca', 'DCAR_012105' => 'dca', 'DCAR_012293' => 'dca', 'DCAR_015632' => 'dca', 'DCAR_024602' => 'dca', 'DCAR_028752' => 'dca', 'Dinv06261' => 'din', 'Dinv13982' => 'din', 'Dinv17029' => 'din', 'Dinv18463' => 'din', 'Dinv33181' => 'din', 'Dinv35585' => 'din', 'Dinv37161' => 'din', 'Dinv42977' => 'din', 'Dinv43122' => 'din', 'Dinv44517' => 'din', 'Duzib093G0256' => 'dzi', 'Duzib106G1254' => 'dzi', 'Duzib128G1789' => 'dzi', 'Duzib133G0633' => 'dzi', 'Duzib138G0510' => 'dzi', 'Duzib150G1084' => 'dzi', 'Duzib168G0488' => 'dzi', 'Duzib168G1523' => 'dzi', 'Duzib170G0133' => 'dzi', 'ECA234G1433' => 'eca', 'ECA236G1432' => 'eca', 'ECA236G2256' => 'eca', 'ECA236G2365' => 'eca', 'ECA236G4830' => 'eca', 'ECA248G1505' => 'eca', 'EL10Ac3g06431' => 'bvu', 'EL10Ac5g12577' => 'bvu', 'EL10Ac6g13533' => 'bvu', 'EL10Ac7g16045' => 'bvu', 'Eucgr.A01281' => 'egr', 'Eucgr.B02326' => 'egr', 'Eucgr.H03532' => 'egr', 'Eucgr.K00553' => 'egr', 'Eucgr.K03116' => 'egr', 'FAN02G3963' => 'fan', 'FAN05G0438' => 'fan', 'FAN09G2434' => 'fan', 'FAN12G3984' => 'fan', 'FAN14G0798' => 'fan', 'FAN17G0652' => 'fan', 'FAN19G1988' => 'fan', 'FAN22G0632' => 'fan', 'FAN23G0387' => 'fan', 'FAN26G1323' => 'fan', 'FAN28G0666' => 'fan', 'FvH4_1g26080' => 'fve', 'FvH4_3g36780' => 'fve', 'FvH4_4g15270' => 'fve', 'FvH4_6g13490' => 'fve', 'Glyma.01G098700' => 'gma', 'Glyma.03G065900' => 'gma', 'Glyma.03G073754' => 'gma', 'Glyma.03G073758' => 'gma', 'Glyma.03G083200' => 'gma', 'Glyma.03G225500' => 'gma', 'Glyma.05G037766' => 'gma', 'Glyma.07G133500' => 'gma', 'Glyma.10G139400' => 'gma', 'Glyma.10G248900' => 'gma', 'Glyma.11G137800' => 'gma', 'Glyma.12G061300' => 'gma', 'Glyma.13G337900' => 'gma', 'Glyma.15G036600' => 'gma', 'Glyma.18G182800' => 'gma', 'Glyma.19G222500' => 'gma', 'Glyma.20G144800' => 'gma', 'Gohir.A01G222000' => 'ghi', 'Gohir.A03G044000' => 'ghi', 'Gohir.A03G044100' => 'ghi', 'Gohir.A04G083100' => 'ghi', 'Gohir.A07G127200' => 'ghi', 'Gohir.A07G132400' => 'ghi', 'Gohir.A08G000700' => 'ghi', 'Gohir.A11G327300' => 'ghi', 'Gohir.D01G211500' => 'ghi', 'Gohir.D03G123400' => 'ghi', 'Gohir.D03G123500' => 'ghi', 'Gohir.D04G121800' => 'ghi', 'Gohir.D07G131500' => 'ghi', 'Gohir.D07G136600' => 'ghi', 'Gohir.D08G011600' => 'ghi', 'Gohir.D11G346200' => 'ghi', 'Gorai.001G142800' => 'gra', 'Gorai.001G148700' => 'gra', 'Gorai.002G257300' => 'gra', 'Gorai.003G130000' => 'gra', 'Gorai.003G130100' => 'gra', 'Gorai.004G005300' => 'gra', 'Gorai.007G376500' => 'gra', 'Gorai.012G104700' => 'gra', 'GSVIVG01017946001' => 'vvi', 'GSVIVG01024928001' => 'vvi', 'GSVIVG01028227001' => 'vvi', 'GSVIVG01034151001' => 'vvi', 'HanXRQChr05g0135031' => 'han', 'HanXRQChr05g0135041' => 'han', 'HanXRQChr05g0140021' => 'han', 'HanXRQChr06g0178981' => 'han', 'HanXRQChr07g0188251' => 'han', 'HanXRQChr08g0235311' => 'han', 'HanXRQChr09g0271011' => 'han', 'HanXRQChr10g0293321' => 'han', 'HanXRQChr13g0388171' => 'han', 'Haze_00916' => 'cav', 'Haze_05063' => 'cav', 'Haze_20814' => 'cav', 'Haze_24128' => 'cav', 'Hma1.2p1_0745F.1_g212010' => 'hma', 'Hma1.2p1_0757F.1_g213260' => 'hma', 'Hma1.2p1_0936F.1_g238840' => 'hma', 'Hma1.2p1_1735F.1_g299890' => 'hma', 'Hma1.2p1_1861F.1_g305685' => 'hma', 'HPP92_003397' => 'vpl', 'HPP92_012597' => 'vpl', 'HPP92_015520' => 'vpl', 'HPP92_015539' => 'vpl', 'HPP92_020373' => 'vpl', 'Hund04938' => 'sun', 'Hund10677' => 'sun', 'Hund11033' => 'sun', 'Hund12155' => 'sun', 'Lalb_Chr01g0022551' => 'lal', 'Lalb_Chr03g0042341' => 'lal', 'Lalb_Chr07g0192931' => 'lal', 'Lalb_Chr12g0209551' => 'lal', 'Lalb_Chr19g0125251' => 'lal', 'Lalb_Chr19g0137891' => 'lal', 'Lalb_Chr21g0304641' => 'lal', 'Lalb_Chr21g0309881' => 'lal', 'Lj1A5T12' => 'lonja', 'Lj1C148G10' => 'lonja', 'Lj2A93T83' => 'lonja', 'Lj3A738G68' => 'lonja', 'Lj3C966T1' => 'lonja', 'Lj3g0018958' => 'lja', 'Lj3g0021831' => 'lja', 'Lj3g0025443' => 'lja', 'Lj4g0026809' => 'lja', 'Lj5g0012558' => 'lja', 'Lj5g0021586' => 'lja', 'Lsat_1_v5_gn_5_156840' => 'lsa', 'Lsat_1_v5_gn_8_73460' => 'lsa', 'Lsat_1_v5_gn_8_73481' => 'lsa', 'Lsat_1_v5_gn_9_31601' => 'lsa', 'Lsat_1_v5_gn_9_77320' => 'lsa', 'Manes.01G171300' => 'mes', 'Manes.01G171400' => 'mes', 'Manes.01G236100' => 'mes', 'Manes.02G130500' => 'mes', 'Manes.02G130600' => 'mes', 'Manes.03G180200' => 'mes', 'Manes.05G007000' => 'mes', 'Manes.08G084400' => 'mes', 'Manes.09G092600' => 'mes', 'Manes.15G027900' => 'mes', 'MBI04_g40948_MAGBIO' => 'mbi', 'MBI14_g12123_MAGBIO' => 'mbi', 'MBI18_g28915_MAGBIO' => 'mbi', 'MCO09G053' => 'mco', 'MCO11G782' => 'mco', 'MCO15G215' => 'mco', 'MD03G1088500' => 'mdo', 'MD03G1088600' => 'mdo', 'MD04G1130800' => 'mdo', 'MD09G1291700' => 'mdo', 'MD11G1097500' => 'mdo', 'MD11G1097600' => 'mdo', 'MD12G1143900' => 'mdo', 'MD13G1191400' => 'mdo', 'MD16G1191500' => 'mdo', 'Medtr1g085570' => 'mtr', 'Medtr1g104610' => 'mtr', 'Medtr2g097520' => 'mtr', 'Medtr4g021800' => 'mtr', 'Medtr4g021825' => 'mtr', 'Medtr4g064270' => 'mtr', 'Medtr4g064380' => 'mtr', 'Medtr7g062150' => 'mtr', 'MELO3C003138.2' => 'cme', 'MELO3C005187.2' => 'cme', 'MELO3C009252.2' => 'cme', 'MELO3C014481.2' => 'cme', 'MELO3C020616.2' => 'cme', 'MELO3C020617.2' => 'cme', 'MELO3C020618.2' => 'cme', 'Migut.G00328' => 'egut', 'Migut.J00320' => 'egut', 'Migut.L01000' => 'egut', 'Migut.L01953' => 'egut', 'MSTRG.10253' => 'ama', 'MSTRG.19077' => 'ama', 'MSTRG.26780' => 'ama', 'MSTRG.4023' => 'ama', 'MSTRG.5655' => 'ama', 'MSTRG.9992' => 'ama', 'Nitab4.5_0000043g0310' => 'nta', 'Nitab4.5_0000463g0080' => 'nta', 'Nitab4.5_0000705g0170' => 'nta', 'Nitab4.5_0001326g0060' => 'nta', 'Nitab4.5_0001628g0030' => 'nta', 'Nitab4.5_0002103g0110' => 'nta', 'Nitab4.5_0002946g0030' => 'nta', 'Nitab4.5_0004639g0030' => 'nta', 'Nn2g11149' => 'nnu', 'Nn2g13389' => 'nnu', 'Nn4g25326' => 'nnu', 'Nn4g26290' => 'nnu', 'Nn5g29865' => 'nnu', 'Oeu004163.1' => 'oeu', 'Oeu006901.1' => 'oeu', 'Oeu010096.1' => 'oeu', 'Oeu024340.1' => 'oeu', 'Oeu048369.1' => 'oeu', 'Os01g0973000' => 'osa', 'Os03g0273800' => 'osa', 'Os03g0701200' => 'osa', 'Os03g0834050' => 'osa', 'Os07g0634400' => 'osa', 'Peaxi162Scf00092g01414' => 'pax', 'Peaxi162Scf00165g00818' => 'pax', 'Peaxi162Scf00309g00516' => 'pax', 'Peaxi162Scf00774g00218' => 'pax', 'PGR004G1824' => 'pgr', 'PGR004G2606' => 'pgr', 'PGR031G2716' => 'pgr', 'PGR102G2460' => 'pgr', 'PGR142G2599' => 'pgr', 'PGSC0003DMG400000843' => 'stu', 'PGSC0003DMG400008829' => 'stu', 'PGSC0003DMG400030418' => 'stu', 'PGSC0003DMG400031834' => 'stu', 'PGSC0003DMG401028300' => 'stu', 'PGSC0003DMG402028300' => 'stu', 'Phvul.001G219300' => 'pvu', 'Phvul.007G056000' => 'pvu', 'Phvul.007G208000' => 'pvu', 'Phvul.008G119500' => 'pvu', 'Phvul.010G011200' => 'pvu', 'Phvul.010G014800' => 'pvu', 'Phvul.011G062900' => 'pvu', 'Phvul.L007043' => 'pvu', 'Potri.001G242300' => 'ptr', 'Potri.002G185300' => 'ptr', 'Potri.006G086900' => 'ptr', 'Potri.008G151700' => 'ptr', 'Potri.009G033500' => 'ptr', 'Potri.010G089300' => 'ptr', 'Potri.014G110800' => 'ptr', 'Pp3c27_8130' => 'ppa', 'Pp3c6_27410' => 'ppa', 'PRCOL_00001659' => 'pco', 'PRCOL_00001927' => 'pco', 'PRCOL_00003649' => 'pco', 'Prupe.1G011600' => 'ppe', 'Prupe.3G000800' => 'ppe', 'Prupe.3G001100' => 'ppe', 'Prupe.6G072700' => 'ppe', 'Prupe.6G072800' => 'ppe', 'Prupe.6G257300' => 'ppe', 'Prupe.8G033000' => 'ppe', 'Psat0s2633g0080' => 'psa', 'Psat0s3396g0080' => 'psa', 'Psat0s3396g0200' => 'psa', 'Psat3g139080' => 'psa', 'Psat5g285080' => 'psa', 'Psat6g157760' => 'psa', 'Psat6g208440' => 'psa', 'Psat7g215320' => 'psa', 'Psat7g215400' => 'psa', 'Psat7g235600' => 'psa', 'Psat7g235760' => 'psa', 'PSO063G4603' => 'pso', 'PSO210G0182' => 'pso', 'PSO210G0196' => 'pso', 'PSO339G0394' => 'pso', 'PSO339G4127' => 'pso', 'PSO513G0064' => 'pso', 'PSO761G0079' => 'pso', 'QL01p031003' => 'qlo', 'QL01p031078' => 'qlo', 'QL06p003004' => 'qlo', 'QL07p048731' => 'qlo', 'QL09p037427' => 'qlo', 'RcHm_v2.0_Chr3g0466361' => 'rch', 'RcHm_v2.0_Chr3g0485571' => 'rch', 'RcHm_v2.0_Chr4g0416551' => 'rch', 'RcHm_v2.0_Chr5g0065831' => 'rch', 'Rhsim01G0230500' => 'rsi', 'Rhsim05G0194000' => 'rsi', 'Rhsim08G0250400' => 'rsi', 'Sabra02G0131000' => 'sbr', 'Sabra06G0066300' => 'sbr', 'Sabra08G0115500' => 'sbr', 'Sabra09G0023900' => 'sbr', 'Sabra10G0054000' => 'sbr', 'Sabra14G0081500' => 'sbr', 'Sabra16G0147100' => 'sbr', 'SalBow2G2957' => 'sbo', 'SalBow4G3320' => 'sbo', 'SalBow8G1894' => 'sbo', 'Sc07g0007950' => 'sci', 'Sc12g0001360' => 'sci', 'Sc13g0004330' => 'sci', 'Sc20g0005010' => 'sci', 'Sed0000361' => 'sed', 'Sed0001706' => 'sed', 'Sed0002422' => 'sed', 'Sed0004029' => 'sed', 'Sed0004602' => 'sed', 'Sed0004943' => 'sed', 'Sed0008646' => 'sed', 'Sed0023313' => 'sed', 'Sed0024843' => 'sed', 'SEGI_00081' => 'sgi', 'SEGI_00947' => 'sgi', 'SEGI_04046' => 'sgi', 'SEGI_06880' => 'sgi', 'SEGI_09736' => 'sgi', 'SEGI_12741' => 'sgi', 'SEGI_14530' => 'sgi', 'SEGI_20705' => 'sgi', 'SEGI_26088' => 'sgi', 'SEGI_28323' => 'sgi', 'SEGI_33343' => 'sgi', 'SGA_v2.0_scaffold126G33775' => 'sas', 'SGA_v2.0_scaffold2G01337' => 'sas', 'SGA_v2.0_scaffold38G15006' => 'sas', 'SGA_v2.0_scaffold39G15264' => 'sas', 'SGA_v2.0_scaffold453G51880' => 'sas', 'SHI12696' => 'shi', 'SMO367G1096' => 'smo', 'Solyc01g068630.3' => 'sly', 'Solyc05g011880.3' => 'sly', 'Solyc06g076300.3' => 'sly', 'Solyc09g010940.4' => 'sly', 'Solyc09g075890.3' => 'sly', 'Sopen01g030560' => 'spe', 'Sopen05g006630' => 'spe', 'Sopen06g032720' => 'spe', 'Sopen09g005660' => 'spe', 'Sopen09g030690' => 'spe', 'Sp4g14540' => 'spa', 'Sp4g20030' => 'spa', 'Sp5g01320' => 'spa', 'Sp6g21170' => 'spa', 'Sp6g21180' => 'spa', 'Sp6g21190' => 'spa', 'Sp6g40220' => 'spa', 'TAR362G0122' => 'tar', 'TAR362G1338' => 'tar', 'TAR369G0590' => 'tar', 'TAR371G0824' => 'tar', 'TAR622G1429' => 'tar', 'TAR623G0734' => 'tar', 'TAR625G0441' => 'tar', 'TAR629G0976' => 'tar', 'TAR633G1195' => 'tar', 'TAR636G2660' => 'tar', 'THA.LOC104799440' => 'tha', 'THA.LOC104800966' => 'tha', 'THA.LOC104806559' => 'tha', 'THA.LOC104810765' => 'tha', 'THA.LOC104816266' => 'tha', 'THA.LOC104817419' => 'tha', 'THA.LOC104827021' => 'tha', 'Thecc.01G327400' => 'tca', 'Thecc.04G229200' => 'tca', 'Thecc.05G037400' => 'tca', 'Thecc.09G318600' => 'tca', 'Thecc.09G318700' => 'tca', 'Thhalv10006238m.g' => 'esa', 'Thhalv10014321m.g' => 'esa', 'Thhalv10014335m.g' => 'esa', 'Thhalv10015826m.g' => 'esa', 'Thhalv10017107m.g' => 'esa', 'Thhalv10017180m.g' => 'esa', 'Thhalv10029339m.g' => 'esa', 'TPR.G1699' => 'tpr', 'TPR.G23609' => 'tpr', 'TPR.G3081' => 'tpr', 'TPR.G40397' => 'tpr', 'TPR.G5522' => 'tpr', 'TPR.G5618' => 'tpr', 'TPR.G5626' => 'tpr', 'TWI09G1632' => 'twi', 'TWI23G1230' => 'twi', 'TWI53G1064' => 'twi', 'TWI59G0751' => 'twi', 'TWI74G0947' => 'twi', 'TWI77G0337' => 'twi', 'TWI79G1254' => 'twi', 'unitig_0.g2341' => 'ugi', 'unitig_26.g10006' => 'ugi', 'unitig_26.g10008' => 'ugi', 'unitig_26.g9192' => 'ugi', 'vmacro14547' => 'vma', 'vmacro15333' => 'vma', 'vmacro18743' => 'vma', 'vmacro20166' => 'vma', 'VMungo0331G0523' => 'vmu', 'VMungo0331G1202' => 'vmu', 'VMungo0720G1228' => 'vmu', 'VMungo0720G1514' => 'vmu', 'VMungo1080G0169' => 'vmu', 'VMungo1127G1475' => 'vmu', 'VMungo1383G1208' => 'vmu', 'VMungo1383G1698' => 'vmu', 'Zm00001eb012270' => 'zma', 'Zm00001eb054100' => 'zma', 'Zm00001eb063350' => 'zma', 'Zm00001eb328560' => 'zma', 'Zm00001eb342820' => 'zma', 'Zm00001eb362210' => 'zma', 'Zm00001eb397730' => 'zma', 'Zm00001eb399750' => 'zma' ) $gf_id = 'HOM05D000959' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000959' ) $data_identifier = 'HOM05D000959' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 5, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 5, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 10, 'mbi' => (int) 3, 'mco' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 2, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 3, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 11, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399750' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000959', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '622', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p07100' => 'bna', 'A03p11720' => 'bna', 'A05p08300' => 'bna', 'A05p13380' => 'bna', 'A09p54130' => 'bna', 'A10p16690' => 'bna', 'A10p16700' => 'bna', 'A10p33390' => 'bna', 'Aa31LG10G16020' => 'aar', 'Aa31LG1G11810' => 'aar', 'Aa31LG1G11830' => 'aar', 'Aa31LG1G22510' => 'aar', 'Aa31LG5G4890' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5793' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2310' => 'aag', 'Actinidia08499' => 'ach', 'Actinidia11262' => 'ach', 'Actinidia23926' => 'ach', 'Actinidia34420' => 'ach', 'Actinidia36970' => 'ach', 'Ah.02g111220' => 'amhyb', 'Ah.15g097750' => 'amhyb', 'AL4G27500' => 'aly', 'AL6G11470' => 'aly', 'AL8G35950' => 'aly', 'AL8G35960' => 'aly', 'AL8G35970' => 'aly', 'Aqoxy1G00912' => 'aox', 'Aqoxy2G02253' => 'aox', 'Aqoxy2G02411' => 'aox', 'Aqoxy5G00485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BZ66YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K8ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM4FUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6BF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HFV7XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25JBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0YNNV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MAKK6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P70IT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP2Z6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V61LZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YWP64R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3S9AI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7PGHH' => 'arhy', 'AT2G32150' => 'ath', 'AT3G62040' => 'ath', 'AT5G02230' => 'ath', 'AT5G59480' => 'ath', 'AT5G59490' => 'ath', 'ATR0332G060' => 'atr', 'ATR0559G190' => 'atr', 'ATR0693G294' => 'atr', 'Atru.chr3.3975' => 'acertr', 'Atru.chr3.3976' => 'acertr', 'Atru.chr3.3977' => 'acertr', 'Atru.chr4.2498' => 'acertr', 'Atru.chr5.838' => 'acertr', 'Atru.chr8.1990' => 'acertr', 'Atru.chr8.1991' => 'acertr', 'Atru.chr8.1992' => 'acertr', 'AUR62001759' => 'cqu', 'AUR62009545' => 'cqu', 'AUR62010474' => 'cqu', 'AUR62025820' => 'cqu', 'AUR62030422' => 'cqu', 'AUR62033605' => 'cqu', 'AUR62038615' => 'cqu', 'AUR62041347' => 'cqu', 'BcaB01g04574' => 'bca', 'BcaB02g09263' => 'bca', 'BcaB02g10453' => 'bca', 'BcaB05g22513' => 'bca', 'BcaB08g36253' => 'bca', 'BcaB08g36254' => 'bca', 'BcaC01g06519' => 'bca', 'BcaC02g11889' => 'bca', 'BcaC03g14010' => 'bca', 'BcaC03g18439' => 'bca', 'BcaC04g19765' => 'bca', 'BcaC09g48432' => 'bca', 'BcaNung07302' => 'bca', 'BolC2t06040H' => 'bol', 'BolC2t07346H' => 'bol', 'BolC3t13817H' => 'bol', 'BolC4t22625H' => 'bol', 'BolC4t23297H' => 'bol', 'BolC8t51278H' => 'bol', 'BolC9t58050H' => 'bol', 'BolC9t58051H' => 'bol', 'BolC9t60163H' => 'bol', 'BraA02t04712Z' => 'bra', 'BraA02t05791Z' => 'bra', 'BraA03t10483Z' => 'bra', 'BraA05t19795Z' => 'bra', 'BraA05t20276Z' => 'bra', 'BraA09t40827Z' => 'bra', 'BraA10t43750Z' => 'bra', 'BraA10t43751Z' => 'bra', 'BraA10t45370Z' => 'bra', 'C02p00400' => 'bna', 'C02p12460' => 'bna', 'C03p13680' => 'bna', 'C04p10270' => 'bna', 'C04p17500' => 'bna', 'C08p37010' => 'bna', 'C09p51880' => 'bna', 'C09p51890' => 'bna', 'C09p74300' => 'bna', 'CAN.G179.26' => 'can', 'CAN.G3384.1' => 'can', 'CAN.G394.68' => 'can', 'CAN.G907.13' => 'can', 'CANSAT11G0012' => 'cansat', 'CANSAT25G1586' => 'cansat', 'CANSAT35G0735' => 'cansat', 'CANSAT54G0556' => 'cansat', 'CANSAT64G0356' => 'cansat', 'CANSAT78G2042' => 'cansat', 'CARHR125920' => 'chi', 'CARHR131910' => 'chi', 'CARHR172390' => 'chi', 'CARHR211140' => 'chi', 'CARHR285850' => 'chi', 'CARHR285860' => 'chi', 'Carub.0004s1347' => 'cru', 'Carub.0004s1960' => 'cru', 'Carub.0005s2880' => 'cru', 'Carub.0006s0107' => 'cru', 'Carub.0008s2015' => 'cru', 'Carub.0008s2016' => 'cru', 'Carub.0008s2017' => 'cru', 'Ca_01315_v3' => 'car', 'Ca_05063_v3' => 'car', 'Ca_10231_v3' => 'car', 'Ca_10913_v3' => 'car', 'Ca_19156_v3' => 'car', 'Ca_23644_v3' => 'car', 'Ca_26735_v3' => 'car', 'Cc01_g13130' => 'ccan', 'Cc02_g21690' => 'ccan', 'Cc03_g03600' => 'ccan', 'Cc06_g02510' => 'ccan', 'CDE02G1265' => 'cde', 'CDE05G0415' => 'cde', 'CDE08G1082' => 'cde', 'Cfa005780' => 'cfa', 'Cfa011522' => 'cfa', 'Cfa011523' => 'cfa', 'Cfa015627' => 'cfa', 'Cfa017359' => 'cfa', 'Ciclev10005687m.g' => 'ccl', 'Ciclev10012173m.g' => 'ccl', 'Ciclev10021621m.g' => 'ccl', 'Ciclev10028968m.g' => 'ccl', 'Ciclev10029907m.g' => 'ccl', 'CiPaw.01G164800' => 'cil', 'CiPaw.07G083700' => 'cil', 'CiPaw.07G127000' => 'cil', 'CiPaw.07G136900' => 'cil', 'CiPaw.08G081700' => 'cil', 'CiPaw.09G194600' => 'cil', 'CiPaw.10G146500' => 'cil', 'CiPaw.13G091500' => 'cil', 'CiPaw.13G091600' => 'cil', 'ClCG00G003390' => 'cla', 'ClCG01G007220' => 'cla', 'ClCG03G001370' => 'cla', 'ClCG04G008100' => 'cla', 'ClCG06G006110' => 'cla', 'ClCG06G006130' => 'cla', 'ClCG10G021210' => 'cla', 'COL.COLO4_07648' => 'col', 'COL.COLO4_07650' => 'col', 'COL.COLO4_07651' => 'col', 'COL.COLO4_14780' => 'col', 'COL.COLO4_18546' => 'col', 'COL.COLO4_18547' => 'col', 'COL.COLO4_23103' => 'col', 'COL.COLO4_30419' => 'col', 'COL.COLO4_34232' => 'col', 'Cpa.g.sc169.20' => 'cpa', 'Cpa.g.sc57.45' => 'cpa', 'Cpa.g.sc58.124' => 'cpa', 'Cpa.g.sc58.125' => 'cpa', 'Cpa.g.sc81.118' => 'cpa', 'Cpa.g.sc81.119' => 'cpa', 'Cre12.g524700' => 'cre', 'CsaV3_1G034430' => 'csa', 'CsaV3_1G034440' => 'csa', 'CsaV3_1G034450' => 'csa', 'CsaV3_3G034830' => 'csa', 'CsaV3_4G025090' => 'csa', 'CsaV3_5G018660' => 'csa', 'CsaV3_6G038160' => 'csa', 'CSS0003447' => 'camsi', 'CSS0017840' => 'camsi', 'CSS0019260' => 'camsi', 'CSS0040375' => 'camsi', 'CSS0042533' => 'camsi', 'DCAR_005960' => 'dca', 'DCAR_012104' => 'dca', 'DCAR_012105' => 'dca', 'DCAR_012293' => 'dca', 'DCAR_015632' => 'dca', 'DCAR_024602' => 'dca', 'DCAR_028752' => 'dca', 'Dinv06261' => 'din', 'Dinv13982' => 'din', 'Dinv17029' => 'din', 'Dinv18463' => 'din', 'Dinv33181' => 'din', 'Dinv35585' => 'din', 'Dinv37161' => 'din', 'Dinv42977' => 'din', 'Dinv43122' => 'din', 'Dinv44517' => 'din', 'Duzib093G0256' => 'dzi', 'Duzib106G1254' => 'dzi', 'Duzib128G1789' => 'dzi', 'Duzib133G0633' => 'dzi', 'Duzib138G0510' => 'dzi', 'Duzib150G1084' => 'dzi', 'Duzib168G0488' => 'dzi', 'Duzib168G1523' => 'dzi', 'Duzib170G0133' => 'dzi', 'ECA234G1433' => 'eca', 'ECA236G1432' => 'eca', 'ECA236G2256' => 'eca', 'ECA236G2365' => 'eca', 'ECA236G4830' => 'eca', 'ECA248G1505' => 'eca', 'EL10Ac3g06431' => 'bvu', 'EL10Ac5g12577' => 'bvu', 'EL10Ac6g13533' => 'bvu', 'EL10Ac7g16045' => 'bvu', 'Eucgr.A01281' => 'egr', 'Eucgr.B02326' => 'egr', 'Eucgr.H03532' => 'egr', 'Eucgr.K00553' => 'egr', 'Eucgr.K03116' => 'egr', 'FAN02G3963' => 'fan', 'FAN05G0438' => 'fan', 'FAN09G2434' => 'fan', 'FAN12G3984' => 'fan', 'FAN14G0798' => 'fan', 'FAN17G0652' => 'fan', 'FAN19G1988' => 'fan', 'FAN22G0632' => 'fan', 'FAN23G0387' => 'fan', 'FAN26G1323' => 'fan', 'FAN28G0666' => 'fan', 'FvH4_1g26080' => 'fve', 'FvH4_3g36780' => 'fve', 'FvH4_4g15270' => 'fve', 'FvH4_6g13490' => 'fve', 'Glyma.01G098700' => 'gma', 'Glyma.03G065900' => 'gma', 'Glyma.03G073754' => 'gma', 'Glyma.03G073758' => 'gma', 'Glyma.03G083200' => 'gma', 'Glyma.03G225500' => 'gma', 'Glyma.05G037766' => 'gma', 'Glyma.07G133500' => 'gma', 'Glyma.10G139400' => 'gma', 'Glyma.10G248900' => 'gma', 'Glyma.11G137800' => 'gma', 'Glyma.12G061300' => 'gma', 'Glyma.13G337900' => 'gma', 'Glyma.15G036600' => 'gma', 'Glyma.18G182800' => 'gma', 'Glyma.19G222500' => 'gma', 'Glyma.20G144800' => 'gma', 'Gohir.A01G222000' => 'ghi', 'Gohir.A03G044000' => 'ghi', 'Gohir.A03G044100' => 'ghi', 'Gohir.A04G083100' => 'ghi', 'Gohir.A07G127200' => 'ghi', 'Gohir.A07G132400' => 'ghi', 'Gohir.A08G000700' => 'ghi', 'Gohir.A11G327300' => 'ghi', 'Gohir.D01G211500' => 'ghi', 'Gohir.D03G123400' => 'ghi', 'Gohir.D03G123500' => 'ghi', 'Gohir.D04G121800' => 'ghi', 'Gohir.D07G131500' => 'ghi', 'Gohir.D07G136600' => 'ghi', 'Gohir.D08G011600' => 'ghi', 'Gohir.D11G346200' => 'ghi', 'Gorai.001G142800' => 'gra', 'Gorai.001G148700' => 'gra', 'Gorai.002G257300' => 'gra', 'Gorai.003G130000' => 'gra', 'Gorai.003G130100' => 'gra', 'Gorai.004G005300' => 'gra', 'Gorai.007G376500' => 'gra', 'Gorai.012G104700' => 'gra', 'GSVIVG01017946001' => 'vvi', 'GSVIVG01024928001' => 'vvi', 'GSVIVG01028227001' => 'vvi', 'GSVIVG01034151001' => 'vvi', 'HanXRQChr05g0135031' => 'han', 'HanXRQChr05g0135041' => 'han', 'HanXRQChr05g0140021' => 'han', 'HanXRQChr06g0178981' => 'han', 'HanXRQChr07g0188251' => 'han', 'HanXRQChr08g0235311' => 'han', 'HanXRQChr09g0271011' => 'han', 'HanXRQChr10g0293321' => 'han', 'HanXRQChr13g0388171' => 'han', 'Haze_00916' => 'cav', 'Haze_05063' => 'cav', 'Haze_20814' => 'cav', 'Haze_24128' => 'cav', 'Hma1.2p1_0745F.1_g212010' => 'hma', 'Hma1.2p1_0757F.1_g213260' => 'hma', 'Hma1.2p1_0936F.1_g238840' => 'hma', 'Hma1.2p1_1735F.1_g299890' => 'hma', 'Hma1.2p1_1861F.1_g305685' => 'hma', 'HPP92_003397' => 'vpl', 'HPP92_012597' => 'vpl', 'HPP92_015520' => 'vpl', 'HPP92_015539' => 'vpl', 'HPP92_020373' => 'vpl', 'Hund04938' => 'sun', 'Hund10677' => 'sun', 'Hund11033' => 'sun', 'Hund12155' => 'sun', 'Lalb_Chr01g0022551' => 'lal', 'Lalb_Chr03g0042341' => 'lal', 'Lalb_Chr07g0192931' => 'lal', 'Lalb_Chr12g0209551' => 'lal', 'Lalb_Chr19g0125251' => 'lal', 'Lalb_Chr19g0137891' => 'lal', 'Lalb_Chr21g0304641' => 'lal', 'Lalb_Chr21g0309881' => 'lal', 'Lj1A5T12' => 'lonja', 'Lj1C148G10' => 'lonja', 'Lj2A93T83' => 'lonja', 'Lj3A738G68' => 'lonja', 'Lj3C966T1' => 'lonja', 'Lj3g0018958' => 'lja', 'Lj3g0021831' => 'lja', 'Lj3g0025443' => 'lja', 'Lj4g0026809' => 'lja', 'Lj5g0012558' => 'lja', 'Lj5g0021586' => 'lja', 'Lsat_1_v5_gn_5_156840' => 'lsa', 'Lsat_1_v5_gn_8_73460' => 'lsa', 'Lsat_1_v5_gn_8_73481' => 'lsa', 'Lsat_1_v5_gn_9_31601' => 'lsa', 'Lsat_1_v5_gn_9_77320' => 'lsa', 'Manes.01G171300' => 'mes', 'Manes.01G171400' => 'mes', 'Manes.01G236100' => 'mes', 'Manes.02G130500' => 'mes', 'Manes.02G130600' => 'mes', 'Manes.03G180200' => 'mes', 'Manes.05G007000' => 'mes', 'Manes.08G084400' => 'mes', 'Manes.09G092600' => 'mes', 'Manes.15G027900' => 'mes', 'MBI04_g40948_MAGBIO' => 'mbi', 'MBI14_g12123_MAGBIO' => 'mbi', 'MBI18_g28915_MAGBIO' => 'mbi', 'MCO09G053' => 'mco', 'MCO11G782' => 'mco', 'MCO15G215' => 'mco', 'MD03G1088500' => 'mdo', 'MD03G1088600' => 'mdo', 'MD04G1130800' => 'mdo', 'MD09G1291700' => 'mdo', 'MD11G1097500' => 'mdo', 'MD11G1097600' => 'mdo', 'MD12G1143900' => 'mdo', 'MD13G1191400' => 'mdo', 'MD16G1191500' => 'mdo', 'Medtr1g085570' => 'mtr', 'Medtr1g104610' => 'mtr', 'Medtr2g097520' => 'mtr', 'Medtr4g021800' => 'mtr', 'Medtr4g021825' => 'mtr', 'Medtr4g064270' => 'mtr', 'Medtr4g064380' => 'mtr', 'Medtr7g062150' => 'mtr', 'MELO3C003138.2' => 'cme', 'MELO3C005187.2' => 'cme', 'MELO3C009252.2' => 'cme', 'MELO3C014481.2' => 'cme', 'MELO3C020616.2' => 'cme', 'MELO3C020617.2' => 'cme', 'MELO3C020618.2' => 'cme', 'Migut.G00328' => 'egut', 'Migut.J00320' => 'egut', 'Migut.L01000' => 'egut', 'Migut.L01953' => 'egut', 'MSTRG.10253' => 'ama', 'MSTRG.19077' => 'ama', 'MSTRG.26780' => 'ama', 'MSTRG.4023' => 'ama', 'MSTRG.5655' => 'ama', 'MSTRG.9992' => 'ama', 'Nitab4.5_0000043g0310' => 'nta', 'Nitab4.5_0000463g0080' => 'nta', 'Nitab4.5_0000705g0170' => 'nta', 'Nitab4.5_0001326g0060' => 'nta', 'Nitab4.5_0001628g0030' => 'nta', 'Nitab4.5_0002103g0110' => 'nta', 'Nitab4.5_0002946g0030' => 'nta', 'Nitab4.5_0004639g0030' => 'nta', 'Nn2g11149' => 'nnu', 'Nn2g13389' => 'nnu', 'Nn4g25326' => 'nnu', 'Nn4g26290' => 'nnu', 'Nn5g29865' => 'nnu', 'Oeu004163.1' => 'oeu', 'Oeu006901.1' => 'oeu', 'Oeu010096.1' => 'oeu', 'Oeu024340.1' => 'oeu', 'Oeu048369.1' => 'oeu', 'Os01g0973000' => 'osa', 'Os03g0273800' => 'osa', 'Os03g0701200' => 'osa', 'Os03g0834050' => 'osa', 'Os07g0634400' => 'osa', 'Peaxi162Scf00092g01414' => 'pax', 'Peaxi162Scf00165g00818' => 'pax', 'Peaxi162Scf00309g00516' => 'pax', 'Peaxi162Scf00774g00218' => 'pax', 'PGR004G1824' => 'pgr', 'PGR004G2606' => 'pgr', 'PGR031G2716' => 'pgr', 'PGR102G2460' => 'pgr', 'PGR142G2599' => 'pgr', 'PGSC0003DMG400000843' => 'stu', 'PGSC0003DMG400008829' => 'stu', 'PGSC0003DMG400030418' => 'stu', 'PGSC0003DMG400031834' => 'stu', 'PGSC0003DMG401028300' => 'stu', 'PGSC0003DMG402028300' => 'stu', 'Phvul.001G219300' => 'pvu', 'Phvul.007G056000' => 'pvu', 'Phvul.007G208000' => 'pvu', 'Phvul.008G119500' => 'pvu', 'Phvul.010G011200' => 'pvu', 'Phvul.010G014800' => 'pvu', 'Phvul.011G062900' => 'pvu', 'Phvul.L007043' => 'pvu', 'Potri.001G242300' => 'ptr', 'Potri.002G185300' => 'ptr', 'Potri.006G086900' => 'ptr', 'Potri.008G151700' => 'ptr', 'Potri.009G033500' => 'ptr', 'Potri.010G089300' => 'ptr', 'Potri.014G110800' => 'ptr', 'Pp3c27_8130' => 'ppa', 'Pp3c6_27410' => 'ppa', 'PRCOL_00001659' => 'pco', 'PRCOL_00001927' => 'pco', 'PRCOL_00003649' => 'pco', 'Prupe.1G011600' => 'ppe', 'Prupe.3G000800' => 'ppe', 'Prupe.3G001100' => 'ppe', 'Prupe.6G072700' => 'ppe', 'Prupe.6G072800' => 'ppe', 'Prupe.6G257300' => 'ppe', 'Prupe.8G033000' => 'ppe', 'Psat0s2633g0080' => 'psa', 'Psat0s3396g0080' => 'psa', 'Psat0s3396g0200' => 'psa', 'Psat3g139080' => 'psa', 'Psat5g285080' => 'psa', 'Psat6g157760' => 'psa', 'Psat6g208440' => 'psa', 'Psat7g215320' => 'psa', 'Psat7g215400' => 'psa', 'Psat7g235600' => 'psa', 'Psat7g235760' => 'psa', 'PSO063G4603' => 'pso', 'PSO210G0182' => 'pso', 'PSO210G0196' => 'pso', 'PSO339G0394' => 'pso', 'PSO339G4127' => 'pso', 'PSO513G0064' => 'pso', 'PSO761G0079' => 'pso', 'QL01p031003' => 'qlo', 'QL01p031078' => 'qlo', 'QL06p003004' => 'qlo', 'QL07p048731' => 'qlo', 'QL09p037427' => 'qlo', 'RcHm_v2.0_Chr3g0466361' => 'rch', 'RcHm_v2.0_Chr3g0485571' => 'rch', 'RcHm_v2.0_Chr4g0416551' => 'rch', 'RcHm_v2.0_Chr5g0065831' => 'rch', 'Rhsim01G0230500' => 'rsi', 'Rhsim05G0194000' => 'rsi', 'Rhsim08G0250400' => 'rsi', 'Sabra02G0131000' => 'sbr', 'Sabra06G0066300' => 'sbr', 'Sabra08G0115500' => 'sbr', 'Sabra09G0023900' => 'sbr', 'Sabra10G0054000' => 'sbr', 'Sabra14G0081500' => 'sbr', 'Sabra16G0147100' => 'sbr', 'SalBow2G2957' => 'sbo', 'SalBow4G3320' => 'sbo', 'SalBow8G1894' => 'sbo', 'Sc07g0007950' => 'sci', 'Sc12g0001360' => 'sci', 'Sc13g0004330' => 'sci', 'Sc20g0005010' => 'sci', 'Sed0000361' => 'sed', 'Sed0001706' => 'sed', 'Sed0002422' => 'sed', 'Sed0004029' => 'sed', 'Sed0004602' => 'sed', 'Sed0004943' => 'sed', 'Sed0008646' => 'sed', 'Sed0023313' => 'sed', 'Sed0024843' => 'sed', 'SEGI_00081' => 'sgi', 'SEGI_00947' => 'sgi', 'SEGI_04046' => 'sgi', 'SEGI_06880' => 'sgi', 'SEGI_09736' => 'sgi', 'SEGI_12741' => 'sgi', 'SEGI_14530' => 'sgi', 'SEGI_20705' => 'sgi', 'SEGI_26088' => 'sgi', 'SEGI_28323' => 'sgi', 'SEGI_33343' => 'sgi', 'SGA_v2.0_scaffold126G33775' => 'sas', 'SGA_v2.0_scaffold2G01337' => 'sas', 'SGA_v2.0_scaffold38G15006' => 'sas', 'SGA_v2.0_scaffold39G15264' => 'sas', 'SGA_v2.0_scaffold453G51880' => 'sas', 'SHI12696' => 'shi', 'SMO367G1096' => 'smo', 'Solyc01g068630.3' => 'sly', 'Solyc05g011880.3' => 'sly', 'Solyc06g076300.3' => 'sly', 'Solyc09g010940.4' => 'sly', 'Solyc09g075890.3' => 'sly', 'Sopen01g030560' => 'spe', 'Sopen05g006630' => 'spe', 'Sopen06g032720' => 'spe', 'Sopen09g005660' => 'spe', 'Sopen09g030690' => 'spe', 'Sp4g14540' => 'spa', 'Sp4g20030' => 'spa', 'Sp5g01320' => 'spa', 'Sp6g21170' => 'spa', 'Sp6g21180' => 'spa', 'Sp6g21190' => 'spa', 'Sp6g40220' => 'spa', 'TAR362G0122' => 'tar', 'TAR362G1338' => 'tar', 'TAR369G0590' => 'tar', 'TAR371G0824' => 'tar', 'TAR622G1429' => 'tar', 'TAR623G0734' => 'tar', 'TAR625G0441' => 'tar', 'TAR629G0976' => 'tar', 'TAR633G1195' => 'tar', 'TAR636G2660' => 'tar', 'THA.LOC104799440' => 'tha', 'THA.LOC104800966' => 'tha', 'THA.LOC104806559' => 'tha', 'THA.LOC104810765' => 'tha', 'THA.LOC104816266' => 'tha', 'THA.LOC104817419' => 'tha', 'THA.LOC104827021' => 'tha', 'Thecc.01G327400' => 'tca', 'Thecc.04G229200' => 'tca', 'Thecc.05G037400' => 'tca', 'Thecc.09G318600' => 'tca', 'Thecc.09G318700' => 'tca', 'Thhalv10006238m.g' => 'esa', 'Thhalv10014321m.g' => 'esa', 'Thhalv10014335m.g' => 'esa', 'Thhalv10015826m.g' => 'esa', 'Thhalv10017107m.g' => 'esa', 'Thhalv10017180m.g' => 'esa', 'Thhalv10029339m.g' => 'esa', 'TPR.G1699' => 'tpr', 'TPR.G23609' => 'tpr', 'TPR.G3081' => 'tpr', 'TPR.G40397' => 'tpr', 'TPR.G5522' => 'tpr', 'TPR.G5618' => 'tpr', 'TPR.G5626' => 'tpr', 'TWI09G1632' => 'twi', 'TWI23G1230' => 'twi', 'TWI53G1064' => 'twi', 'TWI59G0751' => 'twi', 'TWI74G0947' => 'twi', 'TWI77G0337' => 'twi', 'TWI79G1254' => 'twi', 'unitig_0.g2341' => 'ugi', 'unitig_26.g10006' => 'ugi', 'unitig_26.g10008' => 'ugi', 'unitig_26.g9192' => 'ugi', 'vmacro14547' => 'vma', 'vmacro15333' => 'vma', 'vmacro18743' => 'vma', 'vmacro20166' => 'vma', 'VMungo0331G0523' => 'vmu', 'VMungo0331G1202' => 'vmu', 'VMungo0720G1228' => 'vmu', 'VMungo0720G1514' => 'vmu', 'VMungo1080G0169' => 'vmu', 'VMungo1127G1475' => 'vmu', 'VMungo1383G1208' => 'vmu', 'VMungo1383G1698' => 'vmu', 'Zm00001eb012270' => 'zma', 'Zm00001eb054100' => 'zma', 'Zm00001eb063350' => 'zma', 'Zm00001eb328560' => 'zma', 'Zm00001eb342820' => 'zma', 'Zm00001eb362210' => 'zma', 'Zm00001eb397730' => 'zma', 'Zm00001eb399750' => 'zma' ), 'gf_id' => 'HOM05D000959', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000959' ), 'data_identifier' => 'HOM05D000959', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000959', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '622', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p07100' => 'bna', 'A03p11720' => 'bna', 'A05p08300' => 'bna', 'A05p13380' => 'bna', 'A09p54130' => 'bna', 'A10p16690' => 'bna', 'A10p16700' => 'bna', 'A10p33390' => 'bna', 'Aa31LG10G16020' => 'aar', 'Aa31LG1G11810' => 'aar', 'Aa31LG1G11830' => 'aar', 'Aa31LG1G22510' => 'aar', 'Aa31LG5G4890' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5793' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2310' => 'aag', 'Actinidia08499' => 'ach', 'Actinidia11262' => 'ach', 'Actinidia23926' => 'ach', 'Actinidia34420' => 'ach', 'Actinidia36970' => 'ach', 'Ah.02g111220' => 'amhyb', 'Ah.15g097750' => 'amhyb', 'AL4G27500' => 'aly', 'AL6G11470' => 'aly', 'AL8G35950' => 'aly', 'AL8G35960' => 'aly', 'AL8G35970' => 'aly', 'Aqoxy1G00912' => 'aox', 'Aqoxy2G02253' => 'aox', 'Aqoxy2G02411' => 'aox', 'Aqoxy5G00485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BZ66YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K8ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM4FUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6BF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HFV7XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25JBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0YNNV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MAKK6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P70IT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP2Z6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V61LZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YWP64R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3S9AI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7PGHH' => 'arhy', 'AT2G32150' => 'ath', 'AT3G62040' => 'ath', 'AT5G02230' => 'ath', 'AT5G59480' => 'ath', 'AT5G59490' => 'ath', 'ATR0332G060' => 'atr', 'ATR0559G190' => 'atr', 'ATR0693G294' => 'atr', 'Atru.chr3.3975' => 'acertr', 'Atru.chr3.3976' => 'acertr', 'Atru.chr3.3977' => 'acertr', 'Atru.chr4.2498' => 'acertr', 'Atru.chr5.838' => 'acertr', 'Atru.chr8.1990' => 'acertr', 'Atru.chr8.1991' => 'acertr', 'Atru.chr8.1992' => 'acertr', 'AUR62001759' => 'cqu', 'AUR62009545' => 'cqu', 'AUR62010474' => 'cqu', 'AUR62025820' => 'cqu', 'AUR62030422' => 'cqu', 'AUR62033605' => 'cqu', 'AUR62038615' => 'cqu', 'AUR62041347' => 'cqu', 'BcaB01g04574' => 'bca', 'BcaB02g09263' => 'bca', 'BcaB02g10453' => 'bca', 'BcaB05g22513' => 'bca', 'BcaB08g36253' => 'bca', 'BcaB08g36254' => 'bca', 'BcaC01g06519' => 'bca', 'BcaC02g11889' => 'bca', 'BcaC03g14010' => 'bca', 'BcaC03g18439' => 'bca', 'BcaC04g19765' => 'bca', 'BcaC09g48432' => 'bca', 'BcaNung07302' => 'bca', 'BolC2t06040H' => 'bol', 'BolC2t07346H' => 'bol', 'BolC3t13817H' => 'bol', 'BolC4t22625H' => 'bol', 'BolC4t23297H' => 'bol', 'BolC8t51278H' => 'bol', 'BolC9t58050H' => 'bol', 'BolC9t58051H' => 'bol', 'BolC9t60163H' => 'bol', 'BraA02t04712Z' => 'bra', 'BraA02t05791Z' => 'bra', 'BraA03t10483Z' => 'bra', 'BraA05t19795Z' => 'bra', 'BraA05t20276Z' => 'bra', 'BraA09t40827Z' => 'bra', 'BraA10t43750Z' => 'bra', 'BraA10t43751Z' => 'bra', 'BraA10t45370Z' => 'bra', 'C02p00400' => 'bna', 'C02p12460' => 'bna', 'C03p13680' => 'bna', 'C04p10270' => 'bna', 'C04p17500' => 'bna', 'C08p37010' => 'bna', 'C09p51880' => 'bna', 'C09p51890' => 'bna', 'C09p74300' => 'bna', 'CAN.G179.26' => 'can', 'CAN.G3384.1' => 'can', 'CAN.G394.68' => 'can', 'CAN.G907.13' => 'can', 'CANSAT11G0012' => 'cansat', 'CANSAT25G1586' => 'cansat', 'CANSAT35G0735' => 'cansat', 'CANSAT54G0556' => 'cansat', 'CANSAT64G0356' => 'cansat', 'CANSAT78G2042' => 'cansat', 'CARHR125920' => 'chi', 'CARHR131910' => 'chi', 'CARHR172390' => 'chi', 'CARHR211140' => 'chi', 'CARHR285850' => 'chi', 'CARHR285860' => 'chi', 'Carub.0004s1347' => 'cru', 'Carub.0004s1960' => 'cru', 'Carub.0005s2880' => 'cru', 'Carub.0006s0107' => 'cru', 'Carub.0008s2015' => 'cru', 'Carub.0008s2016' => 'cru', 'Carub.0008s2017' => 'cru', 'Ca_01315_v3' => 'car', 'Ca_05063_v3' => 'car', 'Ca_10231_v3' => 'car', 'Ca_10913_v3' => 'car', 'Ca_19156_v3' => 'car', 'Ca_23644_v3' => 'car', 'Ca_26735_v3' => 'car', 'Cc01_g13130' => 'ccan', 'Cc02_g21690' => 'ccan', 'Cc03_g03600' => 'ccan', 'Cc06_g02510' => 'ccan', 'CDE02G1265' => 'cde', 'CDE05G0415' => 'cde', 'CDE08G1082' => 'cde', 'Cfa005780' => 'cfa', 'Cfa011522' => 'cfa', 'Cfa011523' => 'cfa', 'Cfa015627' => 'cfa', 'Cfa017359' => 'cfa', 'Ciclev10005687m.g' => 'ccl', 'Ciclev10012173m.g' => 'ccl', 'Ciclev10021621m.g' => 'ccl', 'Ciclev10028968m.g' => 'ccl', 'Ciclev10029907m.g' => 'ccl', 'CiPaw.01G164800' => 'cil', 'CiPaw.07G083700' => 'cil', 'CiPaw.07G127000' => 'cil', 'CiPaw.07G136900' => 'cil', 'CiPaw.08G081700' => 'cil', 'CiPaw.09G194600' => 'cil', 'CiPaw.10G146500' => 'cil', 'CiPaw.13G091500' => 'cil', 'CiPaw.13G091600' => 'cil', 'ClCG00G003390' => 'cla', 'ClCG01G007220' => 'cla', 'ClCG03G001370' => 'cla', 'ClCG04G008100' => 'cla', 'ClCG06G006110' => 'cla', 'ClCG06G006130' => 'cla', 'ClCG10G021210' => 'cla', 'COL.COLO4_07648' => 'col', 'COL.COLO4_07650' => 'col', 'COL.COLO4_07651' => 'col', 'COL.COLO4_14780' => 'col', 'COL.COLO4_18546' => 'col', 'COL.COLO4_18547' => 'col', 'COL.COLO4_23103' => 'col', 'COL.COLO4_30419' => 'col', 'COL.COLO4_34232' => 'col', 'Cpa.g.sc169.20' => 'cpa', 'Cpa.g.sc57.45' => 'cpa', 'Cpa.g.sc58.124' => 'cpa', 'Cpa.g.sc58.125' => 'cpa', 'Cpa.g.sc81.118' => 'cpa', 'Cpa.g.sc81.119' => 'cpa', 'Cre12.g524700' => 'cre', 'CsaV3_1G034430' => 'csa', 'CsaV3_1G034440' => 'csa', 'CsaV3_1G034450' => 'csa', 'CsaV3_3G034830' => 'csa', 'CsaV3_4G025090' => 'csa', 'CsaV3_5G018660' => 'csa', 'CsaV3_6G038160' => 'csa', 'CSS0003447' => 'camsi', 'CSS0017840' => 'camsi', 'CSS0019260' => 'camsi', 'CSS0040375' => 'camsi', 'CSS0042533' => 'camsi', 'DCAR_005960' => 'dca', 'DCAR_012104' => 'dca', 'DCAR_012105' => 'dca', 'DCAR_012293' => 'dca', 'DCAR_015632' => 'dca', 'DCAR_024602' => 'dca', 'DCAR_028752' => 'dca', 'Dinv06261' => 'din', 'Dinv13982' => 'din', 'Dinv17029' => 'din', 'Dinv18463' => 'din', 'Dinv33181' => 'din', 'Dinv35585' => 'din', 'Dinv37161' => 'din', 'Dinv42977' => 'din', 'Dinv43122' => 'din', 'Dinv44517' => 'din', 'Duzib093G0256' => 'dzi', 'Duzib106G1254' => 'dzi', 'Duzib128G1789' => 'dzi', 'Duzib133G0633' => 'dzi', 'Duzib138G0510' => 'dzi', 'Duzib150G1084' => 'dzi', 'Duzib168G0488' => 'dzi', 'Duzib168G1523' => 'dzi', 'Duzib170G0133' => 'dzi', 'ECA234G1433' => 'eca', 'ECA236G1432' => 'eca', 'ECA236G2256' => 'eca', 'ECA236G2365' => 'eca', 'ECA236G4830' => 'eca', 'ECA248G1505' => 'eca', 'EL10Ac3g06431' => 'bvu', 'EL10Ac5g12577' => 'bvu', 'EL10Ac6g13533' => 'bvu', 'EL10Ac7g16045' => 'bvu', 'Eucgr.A01281' => 'egr', 'Eucgr.B02326' => 'egr', 'Eucgr.H03532' => 'egr', 'Eucgr.K00553' => 'egr', 'Eucgr.K03116' => 'egr', 'FAN02G3963' => 'fan', 'FAN05G0438' => 'fan', 'FAN09G2434' => 'fan', 'FAN12G3984' => 'fan', 'FAN14G0798' => 'fan', 'FAN17G0652' => 'fan', 'FAN19G1988' => 'fan', 'FAN22G0632' => 'fan', 'FAN23G0387' => 'fan', 'FAN26G1323' => 'fan', 'FAN28G0666' => 'fan', 'FvH4_1g26080' => 'fve', 'FvH4_3g36780' => 'fve', 'FvH4_4g15270' => 'fve', 'FvH4_6g13490' => 'fve', 'Glyma.01G098700' => 'gma', 'Glyma.03G065900' => 'gma', 'Glyma.03G073754' => 'gma', 'Glyma.03G073758' => 'gma', 'Glyma.03G083200' => 'gma', 'Glyma.03G225500' => 'gma', 'Glyma.05G037766' => 'gma', 'Glyma.07G133500' => 'gma', 'Glyma.10G139400' => 'gma', 'Glyma.10G248900' => 'gma', 'Glyma.11G137800' => 'gma', 'Glyma.12G061300' => 'gma', 'Glyma.13G337900' => 'gma', 'Glyma.15G036600' => 'gma', 'Glyma.18G182800' => 'gma', 'Glyma.19G222500' => 'gma', 'Glyma.20G144800' => 'gma', 'Gohir.A01G222000' => 'ghi', 'Gohir.A03G044000' => 'ghi', 'Gohir.A03G044100' => 'ghi', 'Gohir.A04G083100' => 'ghi', 'Gohir.A07G127200' => 'ghi', 'Gohir.A07G132400' => 'ghi', 'Gohir.A08G000700' => 'ghi', 'Gohir.A11G327300' => 'ghi', 'Gohir.D01G211500' => 'ghi', 'Gohir.D03G123400' => 'ghi', 'Gohir.D03G123500' => 'ghi', 'Gohir.D04G121800' => 'ghi', 'Gohir.D07G131500' => 'ghi', 'Gohir.D07G136600' => 'ghi', 'Gohir.D08G011600' => 'ghi', 'Gohir.D11G346200' => 'ghi', 'Gorai.001G142800' => 'gra', 'Gorai.001G148700' => 'gra', 'Gorai.002G257300' => 'gra', 'Gorai.003G130000' => 'gra', 'Gorai.003G130100' => 'gra', 'Gorai.004G005300' => 'gra', 'Gorai.007G376500' => 'gra', 'Gorai.012G104700' => 'gra', 'GSVIVG01017946001' => 'vvi', 'GSVIVG01024928001' => 'vvi', 'GSVIVG01028227001' => 'vvi', 'GSVIVG01034151001' => 'vvi', 'HanXRQChr05g0135031' => 'han', 'HanXRQChr05g0135041' => 'han', 'HanXRQChr05g0140021' => 'han', 'HanXRQChr06g0178981' => 'han', 'HanXRQChr07g0188251' => 'han', 'HanXRQChr08g0235311' => 'han', 'HanXRQChr09g0271011' => 'han', 'HanXRQChr10g0293321' => 'han', 'HanXRQChr13g0388171' => 'han', 'Haze_00916' => 'cav', 'Haze_05063' => 'cav', 'Haze_20814' => 'cav', 'Haze_24128' => 'cav', 'Hma1.2p1_0745F.1_g212010' => 'hma', 'Hma1.2p1_0757F.1_g213260' => 'hma', 'Hma1.2p1_0936F.1_g238840' => 'hma', 'Hma1.2p1_1735F.1_g299890' => 'hma', 'Hma1.2p1_1861F.1_g305685' => 'hma', 'HPP92_003397' => 'vpl', 'HPP92_012597' => 'vpl', 'HPP92_015520' => 'vpl', 'HPP92_015539' => 'vpl', 'HPP92_020373' => 'vpl', 'Hund04938' => 'sun', 'Hund10677' => 'sun', 'Hund11033' => 'sun', 'Hund12155' => 'sun', 'Lalb_Chr01g0022551' => 'lal', 'Lalb_Chr03g0042341' => 'lal', 'Lalb_Chr07g0192931' => 'lal', 'Lalb_Chr12g0209551' => 'lal', 'Lalb_Chr19g0125251' => 'lal', 'Lalb_Chr19g0137891' => 'lal', 'Lalb_Chr21g0304641' => 'lal', 'Lalb_Chr21g0309881' => 'lal', 'Lj1A5T12' => 'lonja', 'Lj1C148G10' => 'lonja', 'Lj2A93T83' => 'lonja', 'Lj3A738G68' => 'lonja', 'Lj3C966T1' => 'lonja', 'Lj3g0018958' => 'lja', 'Lj3g0021831' => 'lja', 'Lj3g0025443' => 'lja', 'Lj4g0026809' => 'lja', 'Lj5g0012558' => 'lja', 'Lj5g0021586' => 'lja', 'Lsat_1_v5_gn_5_156840' => 'lsa', 'Lsat_1_v5_gn_8_73460' => 'lsa', 'Lsat_1_v5_gn_8_73481' => 'lsa', 'Lsat_1_v5_gn_9_31601' => 'lsa', 'Lsat_1_v5_gn_9_77320' => 'lsa', 'Manes.01G171300' => 'mes', 'Manes.01G171400' => 'mes', 'Manes.01G236100' => 'mes', 'Manes.02G130500' => 'mes', 'Manes.02G130600' => 'mes', 'Manes.03G180200' => 'mes', 'Manes.05G007000' => 'mes', 'Manes.08G084400' => 'mes', 'Manes.09G092600' => 'mes', 'Manes.15G027900' => 'mes', 'MBI04_g40948_MAGBIO' => 'mbi', 'MBI14_g12123_MAGBIO' => 'mbi', 'MBI18_g28915_MAGBIO' => 'mbi', 'MCO09G053' => 'mco', 'MCO11G782' => 'mco', 'MCO15G215' => 'mco', 'MD03G1088500' => 'mdo', 'MD03G1088600' => 'mdo', 'MD04G1130800' => 'mdo', 'MD09G1291700' => 'mdo', 'MD11G1097500' => 'mdo', 'MD11G1097600' => 'mdo', 'MD12G1143900' => 'mdo', 'MD13G1191400' => 'mdo', 'MD16G1191500' => 'mdo', 'Medtr1g085570' => 'mtr', 'Medtr1g104610' => 'mtr', 'Medtr2g097520' => 'mtr', 'Medtr4g021800' => 'mtr', 'Medtr4g021825' => 'mtr', 'Medtr4g064270' => 'mtr', 'Medtr4g064380' => 'mtr', 'Medtr7g062150' => 'mtr', 'MELO3C003138.2' => 'cme', 'MELO3C005187.2' => 'cme', 'MELO3C009252.2' => 'cme', 'MELO3C014481.2' => 'cme', 'MELO3C020616.2' => 'cme', 'MELO3C020617.2' => 'cme', 'MELO3C020618.2' => 'cme', 'Migut.G00328' => 'egut', 'Migut.J00320' => 'egut', 'Migut.L01000' => 'egut', 'Migut.L01953' => 'egut', 'MSTRG.10253' => 'ama', 'MSTRG.19077' => 'ama', 'MSTRG.26780' => 'ama', 'MSTRG.4023' => 'ama', 'MSTRG.5655' => 'ama', 'MSTRG.9992' => 'ama', 'Nitab4.5_0000043g0310' => 'nta', 'Nitab4.5_0000463g0080' => 'nta', 'Nitab4.5_0000705g0170' => 'nta', 'Nitab4.5_0001326g0060' => 'nta', 'Nitab4.5_0001628g0030' => 'nta', 'Nitab4.5_0002103g0110' => 'nta', 'Nitab4.5_0002946g0030' => 'nta', 'Nitab4.5_0004639g0030' => 'nta', 'Nn2g11149' => 'nnu', 'Nn2g13389' => 'nnu', 'Nn4g25326' => 'nnu', 'Nn4g26290' => 'nnu', 'Nn5g29865' => 'nnu', 'Oeu004163.1' => 'oeu', 'Oeu006901.1' => 'oeu', 'Oeu010096.1' => 'oeu', 'Oeu024340.1' => 'oeu', 'Oeu048369.1' => 'oeu', 'Os01g0973000' => 'osa', 'Os03g0273800' => 'osa', 'Os03g0701200' => 'osa', 'Os03g0834050' => 'osa', 'Os07g0634400' => 'osa', 'Peaxi162Scf00092g01414' => 'pax', 'Peaxi162Scf00165g00818' => 'pax', 'Peaxi162Scf00309g00516' => 'pax', 'Peaxi162Scf00774g00218' => 'pax', 'PGR004G1824' => 'pgr', 'PGR004G2606' => 'pgr', 'PGR031G2716' => 'pgr', 'PGR102G2460' => 'pgr', 'PGR142G2599' => 'pgr', 'PGSC0003DMG400000843' => 'stu', 'PGSC0003DMG400008829' => 'stu', 'PGSC0003DMG400030418' => 'stu', 'PGSC0003DMG400031834' => 'stu', 'PGSC0003DMG401028300' => 'stu', 'PGSC0003DMG402028300' => 'stu', 'Phvul.001G219300' => 'pvu', 'Phvul.007G056000' => 'pvu', 'Phvul.007G208000' => 'pvu', 'Phvul.008G119500' => 'pvu', 'Phvul.010G011200' => 'pvu', 'Phvul.010G014800' => 'pvu', 'Phvul.011G062900' => 'pvu', 'Phvul.L007043' => 'pvu', 'Potri.001G242300' => 'ptr', 'Potri.002G185300' => 'ptr', 'Potri.006G086900' => 'ptr', 'Potri.008G151700' => 'ptr', 'Potri.009G033500' => 'ptr', 'Potri.010G089300' => 'ptr', 'Potri.014G110800' => 'ptr', 'Pp3c27_8130' => 'ppa', 'Pp3c6_27410' => 'ppa', 'PRCOL_00001659' => 'pco', 'PRCOL_00001927' => 'pco', 'PRCOL_00003649' => 'pco', 'Prupe.1G011600' => 'ppe', 'Prupe.3G000800' => 'ppe', 'Prupe.3G001100' => 'ppe', 'Prupe.6G072700' => 'ppe', 'Prupe.6G072800' => 'ppe', 'Prupe.6G257300' => 'ppe', 'Prupe.8G033000' => 'ppe', 'Psat0s2633g0080' => 'psa', 'Psat0s3396g0080' => 'psa', 'Psat0s3396g0200' => 'psa', 'Psat3g139080' => 'psa', 'Psat5g285080' => 'psa', 'Psat6g157760' => 'psa', 'Psat6g208440' => 'psa', 'Psat7g215320' => 'psa', 'Psat7g215400' => 'psa', 'Psat7g235600' => 'psa', 'Psat7g235760' => 'psa', 'PSO063G4603' => 'pso', 'PSO210G0182' => 'pso', 'PSO210G0196' => 'pso', 'PSO339G0394' => 'pso', 'PSO339G4127' => 'pso', 'PSO513G0064' => 'pso', 'PSO761G0079' => 'pso', 'QL01p031003' => 'qlo', 'QL01p031078' => 'qlo', 'QL06p003004' => 'qlo', 'QL07p048731' => 'qlo', 'QL09p037427' => 'qlo', 'RcHm_v2.0_Chr3g0466361' => 'rch', 'RcHm_v2.0_Chr3g0485571' => 'rch', 'RcHm_v2.0_Chr4g0416551' => 'rch', 'RcHm_v2.0_Chr5g0065831' => 'rch', 'Rhsim01G0230500' => 'rsi', 'Rhsim05G0194000' => 'rsi', 'Rhsim08G0250400' => 'rsi', 'Sabra02G0131000' => 'sbr', 'Sabra06G0066300' => 'sbr', 'Sabra08G0115500' => 'sbr', 'Sabra09G0023900' => 'sbr', 'Sabra10G0054000' => 'sbr', 'Sabra14G0081500' => 'sbr', 'Sabra16G0147100' => 'sbr', 'SalBow2G2957' => 'sbo', 'SalBow4G3320' => 'sbo', 'SalBow8G1894' => 'sbo', 'Sc07g0007950' => 'sci', 'Sc12g0001360' => 'sci', 'Sc13g0004330' => 'sci', 'Sc20g0005010' => 'sci', 'Sed0000361' => 'sed', 'Sed0001706' => 'sed', 'Sed0002422' => 'sed', 'Sed0004029' => 'sed', 'Sed0004602' => 'sed', 'Sed0004943' => 'sed', 'Sed0008646' => 'sed', 'Sed0023313' => 'sed', 'Sed0024843' => 'sed', 'SEGI_00081' => 'sgi', 'SEGI_00947' => 'sgi', 'SEGI_04046' => 'sgi', 'SEGI_06880' => 'sgi', 'SEGI_09736' => 'sgi', 'SEGI_12741' => 'sgi', 'SEGI_14530' => 'sgi', 'SEGI_20705' => 'sgi', 'SEGI_26088' => 'sgi', 'SEGI_28323' => 'sgi', 'SEGI_33343' => 'sgi', 'SGA_v2.0_scaffold126G33775' => 'sas', 'SGA_v2.0_scaffold2G01337' => 'sas', 'SGA_v2.0_scaffold38G15006' => 'sas', 'SGA_v2.0_scaffold39G15264' => 'sas', 'SGA_v2.0_scaffold453G51880' => 'sas', 'SHI12696' => 'shi', 'SMO367G1096' => 'smo', 'Solyc01g068630.3' => 'sly', 'Solyc05g011880.3' => 'sly', 'Solyc06g076300.3' => 'sly', 'Solyc09g010940.4' => 'sly', 'Solyc09g075890.3' => 'sly', 'Sopen01g030560' => 'spe', 'Sopen05g006630' => 'spe', 'Sopen06g032720' => 'spe', 'Sopen09g005660' => 'spe', 'Sopen09g030690' => 'spe', 'Sp4g14540' => 'spa', 'Sp4g20030' => 'spa', 'Sp5g01320' => 'spa', 'Sp6g21170' => 'spa', 'Sp6g21180' => 'spa', 'Sp6g21190' => 'spa', 'Sp6g40220' => 'spa', 'TAR362G0122' => 'tar', 'TAR362G1338' => 'tar', 'TAR369G0590' => 'tar', 'TAR371G0824' => 'tar', 'TAR622G1429' => 'tar', 'TAR623G0734' => 'tar', 'TAR625G0441' => 'tar', 'TAR629G0976' => 'tar', 'TAR633G1195' => 'tar', 'TAR636G2660' => 'tar', 'THA.LOC104799440' => 'tha', 'THA.LOC104800966' => 'tha', 'THA.LOC104806559' => 'tha', 'THA.LOC104810765' => 'tha', 'THA.LOC104816266' => 'tha', 'THA.LOC104817419' => 'tha', 'THA.LOC104827021' => 'tha', 'Thecc.01G327400' => 'tca', 'Thecc.04G229200' => 'tca', 'Thecc.05G037400' => 'tca', 'Thecc.09G318600' => 'tca', 'Thecc.09G318700' => 'tca', 'Thhalv10006238m.g' => 'esa', 'Thhalv10014321m.g' => 'esa', 'Thhalv10014335m.g' => 'esa', 'Thhalv10015826m.g' => 'esa', 'Thhalv10017107m.g' => 'esa', 'Thhalv10017180m.g' => 'esa', 'Thhalv10029339m.g' => 'esa', 'TPR.G1699' => 'tpr', 'TPR.G23609' => 'tpr', 'TPR.G3081' => 'tpr', 'TPR.G40397' => 'tpr', 'TPR.G5522' => 'tpr', 'TPR.G5618' => 'tpr', 'TPR.G5626' => 'tpr', 'TWI09G1632' => 'twi', 'TWI23G1230' => 'twi', 'TWI53G1064' => 'twi', 'TWI59G0751' => 'twi', 'TWI74G0947' => 'twi', 'TWI77G0337' => 'twi', 'TWI79G1254' => 'twi', 'unitig_0.g2341' => 'ugi', 'unitig_26.g10006' => 'ugi', 'unitig_26.g10008' => 'ugi', 'unitig_26.g9192' => 'ugi', 'vmacro14547' => 'vma', 'vmacro15333' => 'vma', 'vmacro18743' => 'vma', 'vmacro20166' => 'vma', 'VMungo0331G0523' => 'vmu', 'VMungo0331G1202' => 'vmu', 'VMungo0720G1228' => 'vmu', 'VMungo0720G1514' => 'vmu', 'VMungo1080G0169' => 'vmu', 'VMungo1127G1475' => 'vmu', 'VMungo1383G1208' => 'vmu', 'VMungo1383G1698' => 'vmu', 'Zm00001eb012270' => 'zma', 'Zm00001eb054100' => 'zma', 'Zm00001eb063350' => 'zma', 'Zm00001eb328560' => 'zma', 'Zm00001eb342820' => 'zma', 'Zm00001eb362210' => 'zma', 'Zm00001eb397730' => 'zma', 'Zm00001eb399750' => 'zma' ) $gf_id = 'HOM05D000959' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000959' ) $data_identifier = 'HOM05D000959' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 5, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 5, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 10, 'mbi' => (int) 3, 'mco' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 2, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 3, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 11, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399750' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000959', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '622', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p07100' => 'bna', 'A03p11720' => 'bna', 'A05p08300' => 'bna', 'A05p13380' => 'bna', 'A09p54130' => 'bna', 'A10p16690' => 'bna', 'A10p16700' => 'bna', 'A10p33390' => 'bna', 'Aa31LG10G16020' => 'aar', 'Aa31LG1G11810' => 'aar', 'Aa31LG1G11830' => 'aar', 'Aa31LG1G22510' => 'aar', 'Aa31LG5G4890' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5793' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2310' => 'aag', 'Actinidia08499' => 'ach', 'Actinidia11262' => 'ach', 'Actinidia23926' => 'ach', 'Actinidia34420' => 'ach', 'Actinidia36970' => 'ach', 'Ah.02g111220' => 'amhyb', 'Ah.15g097750' => 'amhyb', 'AL4G27500' => 'aly', 'AL6G11470' => 'aly', 'AL8G35950' => 'aly', 'AL8G35960' => 'aly', 'AL8G35970' => 'aly', 'Aqoxy1G00912' => 'aox', 'Aqoxy2G02253' => 'aox', 'Aqoxy2G02411' => 'aox', 'Aqoxy5G00485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BZ66YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K8ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM4FUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6BF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HFV7XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25JBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0YNNV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MAKK6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P70IT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP2Z6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V61LZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YWP64R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3S9AI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7PGHH' => 'arhy', 'AT2G32150' => 'ath', 'AT3G62040' => 'ath', 'AT5G02230' => 'ath', 'AT5G59480' => 'ath', 'AT5G59490' => 'ath', 'ATR0332G060' => 'atr', 'ATR0559G190' => 'atr', 'ATR0693G294' => 'atr', 'Atru.chr3.3975' => 'acertr', 'Atru.chr3.3976' => 'acertr', 'Atru.chr3.3977' => 'acertr', 'Atru.chr4.2498' => 'acertr', 'Atru.chr5.838' => 'acertr', 'Atru.chr8.1990' => 'acertr', 'Atru.chr8.1991' => 'acertr', 'Atru.chr8.1992' => 'acertr', 'AUR62001759' => 'cqu', 'AUR62009545' => 'cqu', 'AUR62010474' => 'cqu', 'AUR62025820' => 'cqu', 'AUR62030422' => 'cqu', 'AUR62033605' => 'cqu', 'AUR62038615' => 'cqu', 'AUR62041347' => 'cqu', 'BcaB01g04574' => 'bca', 'BcaB02g09263' => 'bca', 'BcaB02g10453' => 'bca', 'BcaB05g22513' => 'bca', 'BcaB08g36253' => 'bca', 'BcaB08g36254' => 'bca', 'BcaC01g06519' => 'bca', 'BcaC02g11889' => 'bca', 'BcaC03g14010' => 'bca', 'BcaC03g18439' => 'bca', 'BcaC04g19765' => 'bca', 'BcaC09g48432' => 'bca', 'BcaNung07302' => 'bca', 'BolC2t06040H' => 'bol', 'BolC2t07346H' => 'bol', 'BolC3t13817H' => 'bol', 'BolC4t22625H' => 'bol', 'BolC4t23297H' => 'bol', 'BolC8t51278H' => 'bol', 'BolC9t58050H' => 'bol', 'BolC9t58051H' => 'bol', 'BolC9t60163H' => 'bol', 'BraA02t04712Z' => 'bra', 'BraA02t05791Z' => 'bra', 'BraA03t10483Z' => 'bra', 'BraA05t19795Z' => 'bra', 'BraA05t20276Z' => 'bra', 'BraA09t40827Z' => 'bra', 'BraA10t43750Z' => 'bra', 'BraA10t43751Z' => 'bra', 'BraA10t45370Z' => 'bra', 'C02p00400' => 'bna', 'C02p12460' => 'bna', 'C03p13680' => 'bna', 'C04p10270' => 'bna', 'C04p17500' => 'bna', 'C08p37010' => 'bna', 'C09p51880' => 'bna', 'C09p51890' => 'bna', 'C09p74300' => 'bna', 'CAN.G179.26' => 'can', 'CAN.G3384.1' => 'can', 'CAN.G394.68' => 'can', 'CAN.G907.13' => 'can', 'CANSAT11G0012' => 'cansat', 'CANSAT25G1586' => 'cansat', 'CANSAT35G0735' => 'cansat', 'CANSAT54G0556' => 'cansat', 'CANSAT64G0356' => 'cansat', 'CANSAT78G2042' => 'cansat', 'CARHR125920' => 'chi', 'CARHR131910' => 'chi', 'CARHR172390' => 'chi', 'CARHR211140' => 'chi', 'CARHR285850' => 'chi', 'CARHR285860' => 'chi', 'Carub.0004s1347' => 'cru', 'Carub.0004s1960' => 'cru', 'Carub.0005s2880' => 'cru', 'Carub.0006s0107' => 'cru', 'Carub.0008s2015' => 'cru', 'Carub.0008s2016' => 'cru', 'Carub.0008s2017' => 'cru', 'Ca_01315_v3' => 'car', 'Ca_05063_v3' => 'car', 'Ca_10231_v3' => 'car', 'Ca_10913_v3' => 'car', 'Ca_19156_v3' => 'car', 'Ca_23644_v3' => 'car', 'Ca_26735_v3' => 'car', 'Cc01_g13130' => 'ccan', 'Cc02_g21690' => 'ccan', 'Cc03_g03600' => 'ccan', 'Cc06_g02510' => 'ccan', 'CDE02G1265' => 'cde', 'CDE05G0415' => 'cde', 'CDE08G1082' => 'cde', 'Cfa005780' => 'cfa', 'Cfa011522' => 'cfa', 'Cfa011523' => 'cfa', 'Cfa015627' => 'cfa', 'Cfa017359' => 'cfa', 'Ciclev10005687m.g' => 'ccl', 'Ciclev10012173m.g' => 'ccl', 'Ciclev10021621m.g' => 'ccl', 'Ciclev10028968m.g' => 'ccl', 'Ciclev10029907m.g' => 'ccl', 'CiPaw.01G164800' => 'cil', 'CiPaw.07G083700' => 'cil', 'CiPaw.07G127000' => 'cil', 'CiPaw.07G136900' => 'cil', 'CiPaw.08G081700' => 'cil', 'CiPaw.09G194600' => 'cil', 'CiPaw.10G146500' => 'cil', 'CiPaw.13G091500' => 'cil', 'CiPaw.13G091600' => 'cil', 'ClCG00G003390' => 'cla', 'ClCG01G007220' => 'cla', 'ClCG03G001370' => 'cla', 'ClCG04G008100' => 'cla', 'ClCG06G006110' => 'cla', 'ClCG06G006130' => 'cla', 'ClCG10G021210' => 'cla', 'COL.COLO4_07648' => 'col', 'COL.COLO4_07650' => 'col', 'COL.COLO4_07651' => 'col', 'COL.COLO4_14780' => 'col', 'COL.COLO4_18546' => 'col', 'COL.COLO4_18547' => 'col', 'COL.COLO4_23103' => 'col', 'COL.COLO4_30419' => 'col', 'COL.COLO4_34232' => 'col', 'Cpa.g.sc169.20' => 'cpa', 'Cpa.g.sc57.45' => 'cpa', 'Cpa.g.sc58.124' => 'cpa', 'Cpa.g.sc58.125' => 'cpa', 'Cpa.g.sc81.118' => 'cpa', 'Cpa.g.sc81.119' => 'cpa', 'Cre12.g524700' => 'cre', 'CsaV3_1G034430' => 'csa', 'CsaV3_1G034440' => 'csa', 'CsaV3_1G034450' => 'csa', 'CsaV3_3G034830' => 'csa', 'CsaV3_4G025090' => 'csa', 'CsaV3_5G018660' => 'csa', 'CsaV3_6G038160' => 'csa', 'CSS0003447' => 'camsi', 'CSS0017840' => 'camsi', 'CSS0019260' => 'camsi', 'CSS0040375' => 'camsi', 'CSS0042533' => 'camsi', 'DCAR_005960' => 'dca', 'DCAR_012104' => 'dca', 'DCAR_012105' => 'dca', 'DCAR_012293' => 'dca', 'DCAR_015632' => 'dca', 'DCAR_024602' => 'dca', 'DCAR_028752' => 'dca', 'Dinv06261' => 'din', 'Dinv13982' => 'din', 'Dinv17029' => 'din', 'Dinv18463' => 'din', 'Dinv33181' => 'din', 'Dinv35585' => 'din', 'Dinv37161' => 'din', 'Dinv42977' => 'din', 'Dinv43122' => 'din', 'Dinv44517' => 'din', 'Duzib093G0256' => 'dzi', 'Duzib106G1254' => 'dzi', 'Duzib128G1789' => 'dzi', 'Duzib133G0633' => 'dzi', 'Duzib138G0510' => 'dzi', 'Duzib150G1084' => 'dzi', 'Duzib168G0488' => 'dzi', 'Duzib168G1523' => 'dzi', 'Duzib170G0133' => 'dzi', 'ECA234G1433' => 'eca', 'ECA236G1432' => 'eca', 'ECA236G2256' => 'eca', 'ECA236G2365' => 'eca', 'ECA236G4830' => 'eca', 'ECA248G1505' => 'eca', 'EL10Ac3g06431' => 'bvu', 'EL10Ac5g12577' => 'bvu', 'EL10Ac6g13533' => 'bvu', 'EL10Ac7g16045' => 'bvu', 'Eucgr.A01281' => 'egr', 'Eucgr.B02326' => 'egr', 'Eucgr.H03532' => 'egr', 'Eucgr.K00553' => 'egr', 'Eucgr.K03116' => 'egr', 'FAN02G3963' => 'fan', 'FAN05G0438' => 'fan', 'FAN09G2434' => 'fan', 'FAN12G3984' => 'fan', 'FAN14G0798' => 'fan', 'FAN17G0652' => 'fan', 'FAN19G1988' => 'fan', 'FAN22G0632' => 'fan', 'FAN23G0387' => 'fan', 'FAN26G1323' => 'fan', 'FAN28G0666' => 'fan', 'FvH4_1g26080' => 'fve', 'FvH4_3g36780' => 'fve', 'FvH4_4g15270' => 'fve', 'FvH4_6g13490' => 'fve', 'Glyma.01G098700' => 'gma', 'Glyma.03G065900' => 'gma', 'Glyma.03G073754' => 'gma', 'Glyma.03G073758' => 'gma', 'Glyma.03G083200' => 'gma', 'Glyma.03G225500' => 'gma', 'Glyma.05G037766' => 'gma', 'Glyma.07G133500' => 'gma', 'Glyma.10G139400' => 'gma', 'Glyma.10G248900' => 'gma', 'Glyma.11G137800' => 'gma', 'Glyma.12G061300' => 'gma', 'Glyma.13G337900' => 'gma', 'Glyma.15G036600' => 'gma', 'Glyma.18G182800' => 'gma', 'Glyma.19G222500' => 'gma', 'Glyma.20G144800' => 'gma', 'Gohir.A01G222000' => 'ghi', 'Gohir.A03G044000' => 'ghi', 'Gohir.A03G044100' => 'ghi', 'Gohir.A04G083100' => 'ghi', 'Gohir.A07G127200' => 'ghi', 'Gohir.A07G132400' => 'ghi', 'Gohir.A08G000700' => 'ghi', 'Gohir.A11G327300' => 'ghi', 'Gohir.D01G211500' => 'ghi', 'Gohir.D03G123400' => 'ghi', 'Gohir.D03G123500' => 'ghi', 'Gohir.D04G121800' => 'ghi', 'Gohir.D07G131500' => 'ghi', 'Gohir.D07G136600' => 'ghi', 'Gohir.D08G011600' => 'ghi', 'Gohir.D11G346200' => 'ghi', 'Gorai.001G142800' => 'gra', 'Gorai.001G148700' => 'gra', 'Gorai.002G257300' => 'gra', 'Gorai.003G130000' => 'gra', 'Gorai.003G130100' => 'gra', 'Gorai.004G005300' => 'gra', 'Gorai.007G376500' => 'gra', 'Gorai.012G104700' => 'gra', 'GSVIVG01017946001' => 'vvi', 'GSVIVG01024928001' => 'vvi', 'GSVIVG01028227001' => 'vvi', 'GSVIVG01034151001' => 'vvi', 'HanXRQChr05g0135031' => 'han', 'HanXRQChr05g0135041' => 'han', 'HanXRQChr05g0140021' => 'han', 'HanXRQChr06g0178981' => 'han', 'HanXRQChr07g0188251' => 'han', 'HanXRQChr08g0235311' => 'han', 'HanXRQChr09g0271011' => 'han', 'HanXRQChr10g0293321' => 'han', 'HanXRQChr13g0388171' => 'han', 'Haze_00916' => 'cav', 'Haze_05063' => 'cav', 'Haze_20814' => 'cav', 'Haze_24128' => 'cav', 'Hma1.2p1_0745F.1_g212010' => 'hma', 'Hma1.2p1_0757F.1_g213260' => 'hma', 'Hma1.2p1_0936F.1_g238840' => 'hma', 'Hma1.2p1_1735F.1_g299890' => 'hma', 'Hma1.2p1_1861F.1_g305685' => 'hma', 'HPP92_003397' => 'vpl', 'HPP92_012597' => 'vpl', 'HPP92_015520' => 'vpl', 'HPP92_015539' => 'vpl', 'HPP92_020373' => 'vpl', 'Hund04938' => 'sun', 'Hund10677' => 'sun', 'Hund11033' => 'sun', 'Hund12155' => 'sun', 'Lalb_Chr01g0022551' => 'lal', 'Lalb_Chr03g0042341' => 'lal', 'Lalb_Chr07g0192931' => 'lal', 'Lalb_Chr12g0209551' => 'lal', 'Lalb_Chr19g0125251' => 'lal', 'Lalb_Chr19g0137891' => 'lal', 'Lalb_Chr21g0304641' => 'lal', 'Lalb_Chr21g0309881' => 'lal', 'Lj1A5T12' => 'lonja', 'Lj1C148G10' => 'lonja', 'Lj2A93T83' => 'lonja', 'Lj3A738G68' => 'lonja', 'Lj3C966T1' => 'lonja', 'Lj3g0018958' => 'lja', 'Lj3g0021831' => 'lja', 'Lj3g0025443' => 'lja', 'Lj4g0026809' => 'lja', 'Lj5g0012558' => 'lja', 'Lj5g0021586' => 'lja', 'Lsat_1_v5_gn_5_156840' => 'lsa', 'Lsat_1_v5_gn_8_73460' => 'lsa', 'Lsat_1_v5_gn_8_73481' => 'lsa', 'Lsat_1_v5_gn_9_31601' => 'lsa', 'Lsat_1_v5_gn_9_77320' => 'lsa', 'Manes.01G171300' => 'mes', 'Manes.01G171400' => 'mes', 'Manes.01G236100' => 'mes', 'Manes.02G130500' => 'mes', 'Manes.02G130600' => 'mes', 'Manes.03G180200' => 'mes', 'Manes.05G007000' => 'mes', 'Manes.08G084400' => 'mes', 'Manes.09G092600' => 'mes', 'Manes.15G027900' => 'mes', 'MBI04_g40948_MAGBIO' => 'mbi', 'MBI14_g12123_MAGBIO' => 'mbi', 'MBI18_g28915_MAGBIO' => 'mbi', 'MCO09G053' => 'mco', 'MCO11G782' => 'mco', 'MCO15G215' => 'mco', 'MD03G1088500' => 'mdo', 'MD03G1088600' => 'mdo', 'MD04G1130800' => 'mdo', 'MD09G1291700' => 'mdo', 'MD11G1097500' => 'mdo', 'MD11G1097600' => 'mdo', 'MD12G1143900' => 'mdo', 'MD13G1191400' => 'mdo', 'MD16G1191500' => 'mdo', 'Medtr1g085570' => 'mtr', 'Medtr1g104610' => 'mtr', 'Medtr2g097520' => 'mtr', 'Medtr4g021800' => 'mtr', 'Medtr4g021825' => 'mtr', 'Medtr4g064270' => 'mtr', 'Medtr4g064380' => 'mtr', 'Medtr7g062150' => 'mtr', 'MELO3C003138.2' => 'cme', 'MELO3C005187.2' => 'cme', 'MELO3C009252.2' => 'cme', 'MELO3C014481.2' => 'cme', 'MELO3C020616.2' => 'cme', 'MELO3C020617.2' => 'cme', 'MELO3C020618.2' => 'cme', 'Migut.G00328' => 'egut', 'Migut.J00320' => 'egut', 'Migut.L01000' => 'egut', 'Migut.L01953' => 'egut', 'MSTRG.10253' => 'ama', 'MSTRG.19077' => 'ama', 'MSTRG.26780' => 'ama', 'MSTRG.4023' => 'ama', 'MSTRG.5655' => 'ama', 'MSTRG.9992' => 'ama', 'Nitab4.5_0000043g0310' => 'nta', 'Nitab4.5_0000463g0080' => 'nta', 'Nitab4.5_0000705g0170' => 'nta', 'Nitab4.5_0001326g0060' => 'nta', 'Nitab4.5_0001628g0030' => 'nta', 'Nitab4.5_0002103g0110' => 'nta', 'Nitab4.5_0002946g0030' => 'nta', 'Nitab4.5_0004639g0030' => 'nta', 'Nn2g11149' => 'nnu', 'Nn2g13389' => 'nnu', 'Nn4g25326' => 'nnu', 'Nn4g26290' => 'nnu', 'Nn5g29865' => 'nnu', 'Oeu004163.1' => 'oeu', 'Oeu006901.1' => 'oeu', 'Oeu010096.1' => 'oeu', 'Oeu024340.1' => 'oeu', 'Oeu048369.1' => 'oeu', 'Os01g0973000' => 'osa', 'Os03g0273800' => 'osa', 'Os03g0701200' => 'osa', 'Os03g0834050' => 'osa', 'Os07g0634400' => 'osa', 'Peaxi162Scf00092g01414' => 'pax', 'Peaxi162Scf00165g00818' => 'pax', 'Peaxi162Scf00309g00516' => 'pax', 'Peaxi162Scf00774g00218' => 'pax', 'PGR004G1824' => 'pgr', 'PGR004G2606' => 'pgr', 'PGR031G2716' => 'pgr', 'PGR102G2460' => 'pgr', 'PGR142G2599' => 'pgr', 'PGSC0003DMG400000843' => 'stu', 'PGSC0003DMG400008829' => 'stu', 'PGSC0003DMG400030418' => 'stu', 'PGSC0003DMG400031834' => 'stu', 'PGSC0003DMG401028300' => 'stu', 'PGSC0003DMG402028300' => 'stu', 'Phvul.001G219300' => 'pvu', 'Phvul.007G056000' => 'pvu', 'Phvul.007G208000' => 'pvu', 'Phvul.008G119500' => 'pvu', 'Phvul.010G011200' => 'pvu', 'Phvul.010G014800' => 'pvu', 'Phvul.011G062900' => 'pvu', 'Phvul.L007043' => 'pvu', 'Potri.001G242300' => 'ptr', 'Potri.002G185300' => 'ptr', 'Potri.006G086900' => 'ptr', 'Potri.008G151700' => 'ptr', 'Potri.009G033500' => 'ptr', 'Potri.010G089300' => 'ptr', 'Potri.014G110800' => 'ptr', 'Pp3c27_8130' => 'ppa', 'Pp3c6_27410' => 'ppa', 'PRCOL_00001659' => 'pco', 'PRCOL_00001927' => 'pco', 'PRCOL_00003649' => 'pco', 'Prupe.1G011600' => 'ppe', 'Prupe.3G000800' => 'ppe', 'Prupe.3G001100' => 'ppe', 'Prupe.6G072700' => 'ppe', 'Prupe.6G072800' => 'ppe', 'Prupe.6G257300' => 'ppe', 'Prupe.8G033000' => 'ppe', 'Psat0s2633g0080' => 'psa', 'Psat0s3396g0080' => 'psa', 'Psat0s3396g0200' => 'psa', 'Psat3g139080' => 'psa', 'Psat5g285080' => 'psa', 'Psat6g157760' => 'psa', 'Psat6g208440' => 'psa', 'Psat7g215320' => 'psa', 'Psat7g215400' => 'psa', 'Psat7g235600' => 'psa', 'Psat7g235760' => 'psa', 'PSO063G4603' => 'pso', 'PSO210G0182' => 'pso', 'PSO210G0196' => 'pso', 'PSO339G0394' => 'pso', 'PSO339G4127' => 'pso', 'PSO513G0064' => 'pso', 'PSO761G0079' => 'pso', 'QL01p031003' => 'qlo', 'QL01p031078' => 'qlo', 'QL06p003004' => 'qlo', 'QL07p048731' => 'qlo', 'QL09p037427' => 'qlo', 'RcHm_v2.0_Chr3g0466361' => 'rch', 'RcHm_v2.0_Chr3g0485571' => 'rch', 'RcHm_v2.0_Chr4g0416551' => 'rch', 'RcHm_v2.0_Chr5g0065831' => 'rch', 'Rhsim01G0230500' => 'rsi', 'Rhsim05G0194000' => 'rsi', 'Rhsim08G0250400' => 'rsi', 'Sabra02G0131000' => 'sbr', 'Sabra06G0066300' => 'sbr', 'Sabra08G0115500' => 'sbr', 'Sabra09G0023900' => 'sbr', 'Sabra10G0054000' => 'sbr', 'Sabra14G0081500' => 'sbr', 'Sabra16G0147100' => 'sbr', 'SalBow2G2957' => 'sbo', 'SalBow4G3320' => 'sbo', 'SalBow8G1894' => 'sbo', 'Sc07g0007950' => 'sci', 'Sc12g0001360' => 'sci', 'Sc13g0004330' => 'sci', 'Sc20g0005010' => 'sci', 'Sed0000361' => 'sed', 'Sed0001706' => 'sed', 'Sed0002422' => 'sed', 'Sed0004029' => 'sed', 'Sed0004602' => 'sed', 'Sed0004943' => 'sed', 'Sed0008646' => 'sed', 'Sed0023313' => 'sed', 'Sed0024843' => 'sed', 'SEGI_00081' => 'sgi', 'SEGI_00947' => 'sgi', 'SEGI_04046' => 'sgi', 'SEGI_06880' => 'sgi', 'SEGI_09736' => 'sgi', 'SEGI_12741' => 'sgi', 'SEGI_14530' => 'sgi', 'SEGI_20705' => 'sgi', 'SEGI_26088' => 'sgi', 'SEGI_28323' => 'sgi', 'SEGI_33343' => 'sgi', 'SGA_v2.0_scaffold126G33775' => 'sas', 'SGA_v2.0_scaffold2G01337' => 'sas', 'SGA_v2.0_scaffold38G15006' => 'sas', 'SGA_v2.0_scaffold39G15264' => 'sas', 'SGA_v2.0_scaffold453G51880' => 'sas', 'SHI12696' => 'shi', 'SMO367G1096' => 'smo', 'Solyc01g068630.3' => 'sly', 'Solyc05g011880.3' => 'sly', 'Solyc06g076300.3' => 'sly', 'Solyc09g010940.4' => 'sly', 'Solyc09g075890.3' => 'sly', 'Sopen01g030560' => 'spe', 'Sopen05g006630' => 'spe', 'Sopen06g032720' => 'spe', 'Sopen09g005660' => 'spe', 'Sopen09g030690' => 'spe', 'Sp4g14540' => 'spa', 'Sp4g20030' => 'spa', 'Sp5g01320' => 'spa', 'Sp6g21170' => 'spa', 'Sp6g21180' => 'spa', 'Sp6g21190' => 'spa', 'Sp6g40220' => 'spa', 'TAR362G0122' => 'tar', 'TAR362G1338' => 'tar', 'TAR369G0590' => 'tar', 'TAR371G0824' => 'tar', 'TAR622G1429' => 'tar', 'TAR623G0734' => 'tar', 'TAR625G0441' => 'tar', 'TAR629G0976' => 'tar', 'TAR633G1195' => 'tar', 'TAR636G2660' => 'tar', 'THA.LOC104799440' => 'tha', 'THA.LOC104800966' => 'tha', 'THA.LOC104806559' => 'tha', 'THA.LOC104810765' => 'tha', 'THA.LOC104816266' => 'tha', 'THA.LOC104817419' => 'tha', 'THA.LOC104827021' => 'tha', 'Thecc.01G327400' => 'tca', 'Thecc.04G229200' => 'tca', 'Thecc.05G037400' => 'tca', 'Thecc.09G318600' => 'tca', 'Thecc.09G318700' => 'tca', 'Thhalv10006238m.g' => 'esa', 'Thhalv10014321m.g' => 'esa', 'Thhalv10014335m.g' => 'esa', 'Thhalv10015826m.g' => 'esa', 'Thhalv10017107m.g' => 'esa', 'Thhalv10017180m.g' => 'esa', 'Thhalv10029339m.g' => 'esa', 'TPR.G1699' => 'tpr', 'TPR.G23609' => 'tpr', 'TPR.G3081' => 'tpr', 'TPR.G40397' => 'tpr', 'TPR.G5522' => 'tpr', 'TPR.G5618' => 'tpr', 'TPR.G5626' => 'tpr', 'TWI09G1632' => 'twi', 'TWI23G1230' => 'twi', 'TWI53G1064' => 'twi', 'TWI59G0751' => 'twi', 'TWI74G0947' => 'twi', 'TWI77G0337' => 'twi', 'TWI79G1254' => 'twi', 'unitig_0.g2341' => 'ugi', 'unitig_26.g10006' => 'ugi', 'unitig_26.g10008' => 'ugi', 'unitig_26.g9192' => 'ugi', 'vmacro14547' => 'vma', 'vmacro15333' => 'vma', 'vmacro18743' => 'vma', 'vmacro20166' => 'vma', 'VMungo0331G0523' => 'vmu', 'VMungo0331G1202' => 'vmu', 'VMungo0720G1228' => 'vmu', 'VMungo0720G1514' => 'vmu', 'VMungo1080G0169' => 'vmu', 'VMungo1127G1475' => 'vmu', 'VMungo1383G1208' => 'vmu', 'VMungo1383G1698' => 'vmu', 'Zm00001eb012270' => 'zma', 'Zm00001eb054100' => 'zma', 'Zm00001eb063350' => 'zma', 'Zm00001eb328560' => 'zma', 'Zm00001eb342820' => 'zma', 'Zm00001eb362210' => 'zma', 'Zm00001eb397730' => 'zma', 'Zm00001eb399750' => 'zma' ), 'gf_id' => 'HOM05D000959', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000959' ), 'data_identifier' => 'HOM05D000959', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000959', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '622', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p07100' => 'bna', 'A03p11720' => 'bna', 'A05p08300' => 'bna', 'A05p13380' => 'bna', 'A09p54130' => 'bna', 'A10p16690' => 'bna', 'A10p16700' => 'bna', 'A10p33390' => 'bna', 'Aa31LG10G16020' => 'aar', 'Aa31LG1G11810' => 'aar', 'Aa31LG1G11830' => 'aar', 'Aa31LG1G22510' => 'aar', 'Aa31LG5G4890' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5793' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2310' => 'aag', 'Actinidia08499' => 'ach', 'Actinidia11262' => 'ach', 'Actinidia23926' => 'ach', 'Actinidia34420' => 'ach', 'Actinidia36970' => 'ach', 'Ah.02g111220' => 'amhyb', 'Ah.15g097750' => 'amhyb', 'AL4G27500' => 'aly', 'AL6G11470' => 'aly', 'AL8G35950' => 'aly', 'AL8G35960' => 'aly', 'AL8G35970' => 'aly', 'Aqoxy1G00912' => 'aox', 'Aqoxy2G02253' => 'aox', 'Aqoxy2G02411' => 'aox', 'Aqoxy5G00485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BZ66YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K8ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM4FUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6BF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HFV7XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25JBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0YNNV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MAKK6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P70IT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP2Z6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V61LZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YWP64R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3S9AI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7PGHH' => 'arhy', 'AT2G32150' => 'ath', 'AT3G62040' => 'ath', 'AT5G02230' => 'ath', 'AT5G59480' => 'ath', 'AT5G59490' => 'ath', 'ATR0332G060' => 'atr', 'ATR0559G190' => 'atr', 'ATR0693G294' => 'atr', 'Atru.chr3.3975' => 'acertr', 'Atru.chr3.3976' => 'acertr', 'Atru.chr3.3977' => 'acertr', 'Atru.chr4.2498' => 'acertr', 'Atru.chr5.838' => 'acertr', 'Atru.chr8.1990' => 'acertr', 'Atru.chr8.1991' => 'acertr', 'Atru.chr8.1992' => 'acertr', 'AUR62001759' => 'cqu', 'AUR62009545' => 'cqu', 'AUR62010474' => 'cqu', 'AUR62025820' => 'cqu', 'AUR62030422' => 'cqu', 'AUR62033605' => 'cqu', 'AUR62038615' => 'cqu', 'AUR62041347' => 'cqu', 'BcaB01g04574' => 'bca', 'BcaB02g09263' => 'bca', 'BcaB02g10453' => 'bca', 'BcaB05g22513' => 'bca', 'BcaB08g36253' => 'bca', 'BcaB08g36254' => 'bca', 'BcaC01g06519' => 'bca', 'BcaC02g11889' => 'bca', 'BcaC03g14010' => 'bca', 'BcaC03g18439' => 'bca', 'BcaC04g19765' => 'bca', 'BcaC09g48432' => 'bca', 'BcaNung07302' => 'bca', 'BolC2t06040H' => 'bol', 'BolC2t07346H' => 'bol', 'BolC3t13817H' => 'bol', 'BolC4t22625H' => 'bol', 'BolC4t23297H' => 'bol', 'BolC8t51278H' => 'bol', 'BolC9t58050H' => 'bol', 'BolC9t58051H' => 'bol', 'BolC9t60163H' => 'bol', 'BraA02t04712Z' => 'bra', 'BraA02t05791Z' => 'bra', 'BraA03t10483Z' => 'bra', 'BraA05t19795Z' => 'bra', 'BraA05t20276Z' => 'bra', 'BraA09t40827Z' => 'bra', 'BraA10t43750Z' => 'bra', 'BraA10t43751Z' => 'bra', 'BraA10t45370Z' => 'bra', 'C02p00400' => 'bna', 'C02p12460' => 'bna', 'C03p13680' => 'bna', 'C04p10270' => 'bna', 'C04p17500' => 'bna', 'C08p37010' => 'bna', 'C09p51880' => 'bna', 'C09p51890' => 'bna', 'C09p74300' => 'bna', 'CAN.G179.26' => 'can', 'CAN.G3384.1' => 'can', 'CAN.G394.68' => 'can', 'CAN.G907.13' => 'can', 'CANSAT11G0012' => 'cansat', 'CANSAT25G1586' => 'cansat', 'CANSAT35G0735' => 'cansat', 'CANSAT54G0556' => 'cansat', 'CANSAT64G0356' => 'cansat', 'CANSAT78G2042' => 'cansat', 'CARHR125920' => 'chi', 'CARHR131910' => 'chi', 'CARHR172390' => 'chi', 'CARHR211140' => 'chi', 'CARHR285850' => 'chi', 'CARHR285860' => 'chi', 'Carub.0004s1347' => 'cru', 'Carub.0004s1960' => 'cru', 'Carub.0005s2880' => 'cru', 'Carub.0006s0107' => 'cru', 'Carub.0008s2015' => 'cru', 'Carub.0008s2016' => 'cru', 'Carub.0008s2017' => 'cru', 'Ca_01315_v3' => 'car', 'Ca_05063_v3' => 'car', 'Ca_10231_v3' => 'car', 'Ca_10913_v3' => 'car', 'Ca_19156_v3' => 'car', 'Ca_23644_v3' => 'car', 'Ca_26735_v3' => 'car', 'Cc01_g13130' => 'ccan', 'Cc02_g21690' => 'ccan', 'Cc03_g03600' => 'ccan', 'Cc06_g02510' => 'ccan', 'CDE02G1265' => 'cde', 'CDE05G0415' => 'cde', 'CDE08G1082' => 'cde', 'Cfa005780' => 'cfa', 'Cfa011522' => 'cfa', 'Cfa011523' => 'cfa', 'Cfa015627' => 'cfa', 'Cfa017359' => 'cfa', 'Ciclev10005687m.g' => 'ccl', 'Ciclev10012173m.g' => 'ccl', 'Ciclev10021621m.g' => 'ccl', 'Ciclev10028968m.g' => 'ccl', 'Ciclev10029907m.g' => 'ccl', 'CiPaw.01G164800' => 'cil', 'CiPaw.07G083700' => 'cil', 'CiPaw.07G127000' => 'cil', 'CiPaw.07G136900' => 'cil', 'CiPaw.08G081700' => 'cil', 'CiPaw.09G194600' => 'cil', 'CiPaw.10G146500' => 'cil', 'CiPaw.13G091500' => 'cil', 'CiPaw.13G091600' => 'cil', 'ClCG00G003390' => 'cla', 'ClCG01G007220' => 'cla', 'ClCG03G001370' => 'cla', 'ClCG04G008100' => 'cla', 'ClCG06G006110' => 'cla', 'ClCG06G006130' => 'cla', 'ClCG10G021210' => 'cla', 'COL.COLO4_07648' => 'col', 'COL.COLO4_07650' => 'col', 'COL.COLO4_07651' => 'col', 'COL.COLO4_14780' => 'col', 'COL.COLO4_18546' => 'col', 'COL.COLO4_18547' => 'col', 'COL.COLO4_23103' => 'col', 'COL.COLO4_30419' => 'col', 'COL.COLO4_34232' => 'col', 'Cpa.g.sc169.20' => 'cpa', 'Cpa.g.sc57.45' => 'cpa', 'Cpa.g.sc58.124' => 'cpa', 'Cpa.g.sc58.125' => 'cpa', 'Cpa.g.sc81.118' => 'cpa', 'Cpa.g.sc81.119' => 'cpa', 'Cre12.g524700' => 'cre', 'CsaV3_1G034430' => 'csa', 'CsaV3_1G034440' => 'csa', 'CsaV3_1G034450' => 'csa', 'CsaV3_3G034830' => 'csa', 'CsaV3_4G025090' => 'csa', 'CsaV3_5G018660' => 'csa', 'CsaV3_6G038160' => 'csa', 'CSS0003447' => 'camsi', 'CSS0017840' => 'camsi', 'CSS0019260' => 'camsi', 'CSS0040375' => 'camsi', 'CSS0042533' => 'camsi', 'DCAR_005960' => 'dca', 'DCAR_012104' => 'dca', 'DCAR_012105' => 'dca', 'DCAR_012293' => 'dca', 'DCAR_015632' => 'dca', 'DCAR_024602' => 'dca', 'DCAR_028752' => 'dca', 'Dinv06261' => 'din', 'Dinv13982' => 'din', 'Dinv17029' => 'din', 'Dinv18463' => 'din', 'Dinv33181' => 'din', 'Dinv35585' => 'din', 'Dinv37161' => 'din', 'Dinv42977' => 'din', 'Dinv43122' => 'din', 'Dinv44517' => 'din', 'Duzib093G0256' => 'dzi', 'Duzib106G1254' => 'dzi', 'Duzib128G1789' => 'dzi', 'Duzib133G0633' => 'dzi', 'Duzib138G0510' => 'dzi', 'Duzib150G1084' => 'dzi', 'Duzib168G0488' => 'dzi', 'Duzib168G1523' => 'dzi', 'Duzib170G0133' => 'dzi', 'ECA234G1433' => 'eca', 'ECA236G1432' => 'eca', 'ECA236G2256' => 'eca', 'ECA236G2365' => 'eca', 'ECA236G4830' => 'eca', 'ECA248G1505' => 'eca', 'EL10Ac3g06431' => 'bvu', 'EL10Ac5g12577' => 'bvu', 'EL10Ac6g13533' => 'bvu', 'EL10Ac7g16045' => 'bvu', 'Eucgr.A01281' => 'egr', 'Eucgr.B02326' => 'egr', 'Eucgr.H03532' => 'egr', 'Eucgr.K00553' => 'egr', 'Eucgr.K03116' => 'egr', 'FAN02G3963' => 'fan', 'FAN05G0438' => 'fan', 'FAN09G2434' => 'fan', 'FAN12G3984' => 'fan', 'FAN14G0798' => 'fan', 'FAN17G0652' => 'fan', 'FAN19G1988' => 'fan', 'FAN22G0632' => 'fan', 'FAN23G0387' => 'fan', 'FAN26G1323' => 'fan', 'FAN28G0666' => 'fan', 'FvH4_1g26080' => 'fve', 'FvH4_3g36780' => 'fve', 'FvH4_4g15270' => 'fve', 'FvH4_6g13490' => 'fve', 'Glyma.01G098700' => 'gma', 'Glyma.03G065900' => 'gma', 'Glyma.03G073754' => 'gma', 'Glyma.03G073758' => 'gma', 'Glyma.03G083200' => 'gma', 'Glyma.03G225500' => 'gma', 'Glyma.05G037766' => 'gma', 'Glyma.07G133500' => 'gma', 'Glyma.10G139400' => 'gma', 'Glyma.10G248900' => 'gma', 'Glyma.11G137800' => 'gma', 'Glyma.12G061300' => 'gma', 'Glyma.13G337900' => 'gma', 'Glyma.15G036600' => 'gma', 'Glyma.18G182800' => 'gma', 'Glyma.19G222500' => 'gma', 'Glyma.20G144800' => 'gma', 'Gohir.A01G222000' => 'ghi', 'Gohir.A03G044000' => 'ghi', 'Gohir.A03G044100' => 'ghi', 'Gohir.A04G083100' => 'ghi', 'Gohir.A07G127200' => 'ghi', 'Gohir.A07G132400' => 'ghi', 'Gohir.A08G000700' => 'ghi', 'Gohir.A11G327300' => 'ghi', 'Gohir.D01G211500' => 'ghi', 'Gohir.D03G123400' => 'ghi', 'Gohir.D03G123500' => 'ghi', 'Gohir.D04G121800' => 'ghi', 'Gohir.D07G131500' => 'ghi', 'Gohir.D07G136600' => 'ghi', 'Gohir.D08G011600' => 'ghi', 'Gohir.D11G346200' => 'ghi', 'Gorai.001G142800' => 'gra', 'Gorai.001G148700' => 'gra', 'Gorai.002G257300' => 'gra', 'Gorai.003G130000' => 'gra', 'Gorai.003G130100' => 'gra', 'Gorai.004G005300' => 'gra', 'Gorai.007G376500' => 'gra', 'Gorai.012G104700' => 'gra', 'GSVIVG01017946001' => 'vvi', 'GSVIVG01024928001' => 'vvi', 'GSVIVG01028227001' => 'vvi', 'GSVIVG01034151001' => 'vvi', 'HanXRQChr05g0135031' => 'han', 'HanXRQChr05g0135041' => 'han', 'HanXRQChr05g0140021' => 'han', 'HanXRQChr06g0178981' => 'han', 'HanXRQChr07g0188251' => 'han', 'HanXRQChr08g0235311' => 'han', 'HanXRQChr09g0271011' => 'han', 'HanXRQChr10g0293321' => 'han', 'HanXRQChr13g0388171' => 'han', 'Haze_00916' => 'cav', 'Haze_05063' => 'cav', 'Haze_20814' => 'cav', 'Haze_24128' => 'cav', 'Hma1.2p1_0745F.1_g212010' => 'hma', 'Hma1.2p1_0757F.1_g213260' => 'hma', 'Hma1.2p1_0936F.1_g238840' => 'hma', 'Hma1.2p1_1735F.1_g299890' => 'hma', 'Hma1.2p1_1861F.1_g305685' => 'hma', 'HPP92_003397' => 'vpl', 'HPP92_012597' => 'vpl', 'HPP92_015520' => 'vpl', 'HPP92_015539' => 'vpl', 'HPP92_020373' => 'vpl', 'Hund04938' => 'sun', 'Hund10677' => 'sun', 'Hund11033' => 'sun', 'Hund12155' => 'sun', 'Lalb_Chr01g0022551' => 'lal', 'Lalb_Chr03g0042341' => 'lal', 'Lalb_Chr07g0192931' => 'lal', 'Lalb_Chr12g0209551' => 'lal', 'Lalb_Chr19g0125251' => 'lal', 'Lalb_Chr19g0137891' => 'lal', 'Lalb_Chr21g0304641' => 'lal', 'Lalb_Chr21g0309881' => 'lal', 'Lj1A5T12' => 'lonja', 'Lj1C148G10' => 'lonja', 'Lj2A93T83' => 'lonja', 'Lj3A738G68' => 'lonja', 'Lj3C966T1' => 'lonja', 'Lj3g0018958' => 'lja', 'Lj3g0021831' => 'lja', 'Lj3g0025443' => 'lja', 'Lj4g0026809' => 'lja', 'Lj5g0012558' => 'lja', 'Lj5g0021586' => 'lja', 'Lsat_1_v5_gn_5_156840' => 'lsa', 'Lsat_1_v5_gn_8_73460' => 'lsa', 'Lsat_1_v5_gn_8_73481' => 'lsa', 'Lsat_1_v5_gn_9_31601' => 'lsa', 'Lsat_1_v5_gn_9_77320' => 'lsa', 'Manes.01G171300' => 'mes', 'Manes.01G171400' => 'mes', 'Manes.01G236100' => 'mes', 'Manes.02G130500' => 'mes', 'Manes.02G130600' => 'mes', 'Manes.03G180200' => 'mes', 'Manes.05G007000' => 'mes', 'Manes.08G084400' => 'mes', 'Manes.09G092600' => 'mes', 'Manes.15G027900' => 'mes', 'MBI04_g40948_MAGBIO' => 'mbi', 'MBI14_g12123_MAGBIO' => 'mbi', 'MBI18_g28915_MAGBIO' => 'mbi', 'MCO09G053' => 'mco', 'MCO11G782' => 'mco', 'MCO15G215' => 'mco', 'MD03G1088500' => 'mdo', 'MD03G1088600' => 'mdo', 'MD04G1130800' => 'mdo', 'MD09G1291700' => 'mdo', 'MD11G1097500' => 'mdo', 'MD11G1097600' => 'mdo', 'MD12G1143900' => 'mdo', 'MD13G1191400' => 'mdo', 'MD16G1191500' => 'mdo', 'Medtr1g085570' => 'mtr', 'Medtr1g104610' => 'mtr', 'Medtr2g097520' => 'mtr', 'Medtr4g021800' => 'mtr', 'Medtr4g021825' => 'mtr', 'Medtr4g064270' => 'mtr', 'Medtr4g064380' => 'mtr', 'Medtr7g062150' => 'mtr', 'MELO3C003138.2' => 'cme', 'MELO3C005187.2' => 'cme', 'MELO3C009252.2' => 'cme', 'MELO3C014481.2' => 'cme', 'MELO3C020616.2' => 'cme', 'MELO3C020617.2' => 'cme', 'MELO3C020618.2' => 'cme', 'Migut.G00328' => 'egut', 'Migut.J00320' => 'egut', 'Migut.L01000' => 'egut', 'Migut.L01953' => 'egut', 'MSTRG.10253' => 'ama', 'MSTRG.19077' => 'ama', 'MSTRG.26780' => 'ama', 'MSTRG.4023' => 'ama', 'MSTRG.5655' => 'ama', 'MSTRG.9992' => 'ama', 'Nitab4.5_0000043g0310' => 'nta', 'Nitab4.5_0000463g0080' => 'nta', 'Nitab4.5_0000705g0170' => 'nta', 'Nitab4.5_0001326g0060' => 'nta', 'Nitab4.5_0001628g0030' => 'nta', 'Nitab4.5_0002103g0110' => 'nta', 'Nitab4.5_0002946g0030' => 'nta', 'Nitab4.5_0004639g0030' => 'nta', 'Nn2g11149' => 'nnu', 'Nn2g13389' => 'nnu', 'Nn4g25326' => 'nnu', 'Nn4g26290' => 'nnu', 'Nn5g29865' => 'nnu', 'Oeu004163.1' => 'oeu', 'Oeu006901.1' => 'oeu', 'Oeu010096.1' => 'oeu', 'Oeu024340.1' => 'oeu', 'Oeu048369.1' => 'oeu', 'Os01g0973000' => 'osa', 'Os03g0273800' => 'osa', 'Os03g0701200' => 'osa', 'Os03g0834050' => 'osa', 'Os07g0634400' => 'osa', 'Peaxi162Scf00092g01414' => 'pax', 'Peaxi162Scf00165g00818' => 'pax', 'Peaxi162Scf00309g00516' => 'pax', 'Peaxi162Scf00774g00218' => 'pax', 'PGR004G1824' => 'pgr', 'PGR004G2606' => 'pgr', 'PGR031G2716' => 'pgr', 'PGR102G2460' => 'pgr', 'PGR142G2599' => 'pgr', 'PGSC0003DMG400000843' => 'stu', 'PGSC0003DMG400008829' => 'stu', 'PGSC0003DMG400030418' => 'stu', 'PGSC0003DMG400031834' => 'stu', 'PGSC0003DMG401028300' => 'stu', 'PGSC0003DMG402028300' => 'stu', 'Phvul.001G219300' => 'pvu', 'Phvul.007G056000' => 'pvu', 'Phvul.007G208000' => 'pvu', 'Phvul.008G119500' => 'pvu', 'Phvul.010G011200' => 'pvu', 'Phvul.010G014800' => 'pvu', 'Phvul.011G062900' => 'pvu', 'Phvul.L007043' => 'pvu', 'Potri.001G242300' => 'ptr', 'Potri.002G185300' => 'ptr', 'Potri.006G086900' => 'ptr', 'Potri.008G151700' => 'ptr', 'Potri.009G033500' => 'ptr', 'Potri.010G089300' => 'ptr', 'Potri.014G110800' => 'ptr', 'Pp3c27_8130' => 'ppa', 'Pp3c6_27410' => 'ppa', 'PRCOL_00001659' => 'pco', 'PRCOL_00001927' => 'pco', 'PRCOL_00003649' => 'pco', 'Prupe.1G011600' => 'ppe', 'Prupe.3G000800' => 'ppe', 'Prupe.3G001100' => 'ppe', 'Prupe.6G072700' => 'ppe', 'Prupe.6G072800' => 'ppe', 'Prupe.6G257300' => 'ppe', 'Prupe.8G033000' => 'ppe', 'Psat0s2633g0080' => 'psa', 'Psat0s3396g0080' => 'psa', 'Psat0s3396g0200' => 'psa', 'Psat3g139080' => 'psa', 'Psat5g285080' => 'psa', 'Psat6g157760' => 'psa', 'Psat6g208440' => 'psa', 'Psat7g215320' => 'psa', 'Psat7g215400' => 'psa', 'Psat7g235600' => 'psa', 'Psat7g235760' => 'psa', 'PSO063G4603' => 'pso', 'PSO210G0182' => 'pso', 'PSO210G0196' => 'pso', 'PSO339G0394' => 'pso', 'PSO339G4127' => 'pso', 'PSO513G0064' => 'pso', 'PSO761G0079' => 'pso', 'QL01p031003' => 'qlo', 'QL01p031078' => 'qlo', 'QL06p003004' => 'qlo', 'QL07p048731' => 'qlo', 'QL09p037427' => 'qlo', 'RcHm_v2.0_Chr3g0466361' => 'rch', 'RcHm_v2.0_Chr3g0485571' => 'rch', 'RcHm_v2.0_Chr4g0416551' => 'rch', 'RcHm_v2.0_Chr5g0065831' => 'rch', 'Rhsim01G0230500' => 'rsi', 'Rhsim05G0194000' => 'rsi', 'Rhsim08G0250400' => 'rsi', 'Sabra02G0131000' => 'sbr', 'Sabra06G0066300' => 'sbr', 'Sabra08G0115500' => 'sbr', 'Sabra09G0023900' => 'sbr', 'Sabra10G0054000' => 'sbr', 'Sabra14G0081500' => 'sbr', 'Sabra16G0147100' => 'sbr', 'SalBow2G2957' => 'sbo', 'SalBow4G3320' => 'sbo', 'SalBow8G1894' => 'sbo', 'Sc07g0007950' => 'sci', 'Sc12g0001360' => 'sci', 'Sc13g0004330' => 'sci', 'Sc20g0005010' => 'sci', 'Sed0000361' => 'sed', 'Sed0001706' => 'sed', 'Sed0002422' => 'sed', 'Sed0004029' => 'sed', 'Sed0004602' => 'sed', 'Sed0004943' => 'sed', 'Sed0008646' => 'sed', 'Sed0023313' => 'sed', 'Sed0024843' => 'sed', 'SEGI_00081' => 'sgi', 'SEGI_00947' => 'sgi', 'SEGI_04046' => 'sgi', 'SEGI_06880' => 'sgi', 'SEGI_09736' => 'sgi', 'SEGI_12741' => 'sgi', 'SEGI_14530' => 'sgi', 'SEGI_20705' => 'sgi', 'SEGI_26088' => 'sgi', 'SEGI_28323' => 'sgi', 'SEGI_33343' => 'sgi', 'SGA_v2.0_scaffold126G33775' => 'sas', 'SGA_v2.0_scaffold2G01337' => 'sas', 'SGA_v2.0_scaffold38G15006' => 'sas', 'SGA_v2.0_scaffold39G15264' => 'sas', 'SGA_v2.0_scaffold453G51880' => 'sas', 'SHI12696' => 'shi', 'SMO367G1096' => 'smo', 'Solyc01g068630.3' => 'sly', 'Solyc05g011880.3' => 'sly', 'Solyc06g076300.3' => 'sly', 'Solyc09g010940.4' => 'sly', 'Solyc09g075890.3' => 'sly', 'Sopen01g030560' => 'spe', 'Sopen05g006630' => 'spe', 'Sopen06g032720' => 'spe', 'Sopen09g005660' => 'spe', 'Sopen09g030690' => 'spe', 'Sp4g14540' => 'spa', 'Sp4g20030' => 'spa', 'Sp5g01320' => 'spa', 'Sp6g21170' => 'spa', 'Sp6g21180' => 'spa', 'Sp6g21190' => 'spa', 'Sp6g40220' => 'spa', 'TAR362G0122' => 'tar', 'TAR362G1338' => 'tar', 'TAR369G0590' => 'tar', 'TAR371G0824' => 'tar', 'TAR622G1429' => 'tar', 'TAR623G0734' => 'tar', 'TAR625G0441' => 'tar', 'TAR629G0976' => 'tar', 'TAR633G1195' => 'tar', 'TAR636G2660' => 'tar', 'THA.LOC104799440' => 'tha', 'THA.LOC104800966' => 'tha', 'THA.LOC104806559' => 'tha', 'THA.LOC104810765' => 'tha', 'THA.LOC104816266' => 'tha', 'THA.LOC104817419' => 'tha', 'THA.LOC104827021' => 'tha', 'Thecc.01G327400' => 'tca', 'Thecc.04G229200' => 'tca', 'Thecc.05G037400' => 'tca', 'Thecc.09G318600' => 'tca', 'Thecc.09G318700' => 'tca', 'Thhalv10006238m.g' => 'esa', 'Thhalv10014321m.g' => 'esa', 'Thhalv10014335m.g' => 'esa', 'Thhalv10015826m.g' => 'esa', 'Thhalv10017107m.g' => 'esa', 'Thhalv10017180m.g' => 'esa', 'Thhalv10029339m.g' => 'esa', 'TPR.G1699' => 'tpr', 'TPR.G23609' => 'tpr', 'TPR.G3081' => 'tpr', 'TPR.G40397' => 'tpr', 'TPR.G5522' => 'tpr', 'TPR.G5618' => 'tpr', 'TPR.G5626' => 'tpr', 'TWI09G1632' => 'twi', 'TWI23G1230' => 'twi', 'TWI53G1064' => 'twi', 'TWI59G0751' => 'twi', 'TWI74G0947' => 'twi', 'TWI77G0337' => 'twi', 'TWI79G1254' => 'twi', 'unitig_0.g2341' => 'ugi', 'unitig_26.g10006' => 'ugi', 'unitig_26.g10008' => 'ugi', 'unitig_26.g9192' => 'ugi', 'vmacro14547' => 'vma', 'vmacro15333' => 'vma', 'vmacro18743' => 'vma', 'vmacro20166' => 'vma', 'VMungo0331G0523' => 'vmu', 'VMungo0331G1202' => 'vmu', 'VMungo0720G1228' => 'vmu', 'VMungo0720G1514' => 'vmu', 'VMungo1080G0169' => 'vmu', 'VMungo1127G1475' => 'vmu', 'VMungo1383G1208' => 'vmu', 'VMungo1383G1698' => 'vmu', 'Zm00001eb012270' => 'zma', 'Zm00001eb054100' => 'zma', 'Zm00001eb063350' => 'zma', 'Zm00001eb328560' => 'zma', 'Zm00001eb342820' => 'zma', 'Zm00001eb362210' => 'zma', 'Zm00001eb397730' => 'zma', 'Zm00001eb399750' => 'zma' ) $gf_id = 'HOM05D000959' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000959' ) $data_identifier = 'HOM05D000959' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 5, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 5, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 10, 'mbi' => (int) 3, 'mco' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 2, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 3, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 11, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399750' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000959', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '622', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p07100' => 'bna', 'A03p11720' => 'bna', 'A05p08300' => 'bna', 'A05p13380' => 'bna', 'A09p54130' => 'bna', 'A10p16690' => 'bna', 'A10p16700' => 'bna', 'A10p33390' => 'bna', 'Aa31LG10G16020' => 'aar', 'Aa31LG1G11810' => 'aar', 'Aa31LG1G11830' => 'aar', 'Aa31LG1G22510' => 'aar', 'Aa31LG5G4890' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5793' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2310' => 'aag', 'Actinidia08499' => 'ach', 'Actinidia11262' => 'ach', 'Actinidia23926' => 'ach', 'Actinidia34420' => 'ach', 'Actinidia36970' => 'ach', 'Ah.02g111220' => 'amhyb', 'Ah.15g097750' => 'amhyb', 'AL4G27500' => 'aly', 'AL6G11470' => 'aly', 'AL8G35950' => 'aly', 'AL8G35960' => 'aly', 'AL8G35970' => 'aly', 'Aqoxy1G00912' => 'aox', 'Aqoxy2G02253' => 'aox', 'Aqoxy2G02411' => 'aox', 'Aqoxy5G00485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BZ66YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K8ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM4FUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6BF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HFV7XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25JBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0YNNV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MAKK6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P70IT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP2Z6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V61LZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YWP64R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3S9AI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7PGHH' => 'arhy', 'AT2G32150' => 'ath', 'AT3G62040' => 'ath', 'AT5G02230' => 'ath', 'AT5G59480' => 'ath', 'AT5G59490' => 'ath', 'ATR0332G060' => 'atr', 'ATR0559G190' => 'atr', 'ATR0693G294' => 'atr', 'Atru.chr3.3975' => 'acertr', 'Atru.chr3.3976' => 'acertr', 'Atru.chr3.3977' => 'acertr', 'Atru.chr4.2498' => 'acertr', 'Atru.chr5.838' => 'acertr', 'Atru.chr8.1990' => 'acertr', 'Atru.chr8.1991' => 'acertr', 'Atru.chr8.1992' => 'acertr', 'AUR62001759' => 'cqu', 'AUR62009545' => 'cqu', 'AUR62010474' => 'cqu', 'AUR62025820' => 'cqu', 'AUR62030422' => 'cqu', 'AUR62033605' => 'cqu', 'AUR62038615' => 'cqu', 'AUR62041347' => 'cqu', 'BcaB01g04574' => 'bca', 'BcaB02g09263' => 'bca', 'BcaB02g10453' => 'bca', 'BcaB05g22513' => 'bca', 'BcaB08g36253' => 'bca', 'BcaB08g36254' => 'bca', 'BcaC01g06519' => 'bca', 'BcaC02g11889' => 'bca', 'BcaC03g14010' => 'bca', 'BcaC03g18439' => 'bca', 'BcaC04g19765' => 'bca', 'BcaC09g48432' => 'bca', 'BcaNung07302' => 'bca', 'BolC2t06040H' => 'bol', 'BolC2t07346H' => 'bol', 'BolC3t13817H' => 'bol', 'BolC4t22625H' => 'bol', 'BolC4t23297H' => 'bol', 'BolC8t51278H' => 'bol', 'BolC9t58050H' => 'bol', 'BolC9t58051H' => 'bol', 'BolC9t60163H' => 'bol', 'BraA02t04712Z' => 'bra', 'BraA02t05791Z' => 'bra', 'BraA03t10483Z' => 'bra', 'BraA05t19795Z' => 'bra', 'BraA05t20276Z' => 'bra', 'BraA09t40827Z' => 'bra', 'BraA10t43750Z' => 'bra', 'BraA10t43751Z' => 'bra', 'BraA10t45370Z' => 'bra', 'C02p00400' => 'bna', 'C02p12460' => 'bna', 'C03p13680' => 'bna', 'C04p10270' => 'bna', 'C04p17500' => 'bna', 'C08p37010' => 'bna', 'C09p51880' => 'bna', 'C09p51890' => 'bna', 'C09p74300' => 'bna', 'CAN.G179.26' => 'can', 'CAN.G3384.1' => 'can', 'CAN.G394.68' => 'can', 'CAN.G907.13' => 'can', 'CANSAT11G0012' => 'cansat', 'CANSAT25G1586' => 'cansat', 'CANSAT35G0735' => 'cansat', 'CANSAT54G0556' => 'cansat', 'CANSAT64G0356' => 'cansat', 'CANSAT78G2042' => 'cansat', 'CARHR125920' => 'chi', 'CARHR131910' => 'chi', 'CARHR172390' => 'chi', 'CARHR211140' => 'chi', 'CARHR285850' => 'chi', 'CARHR285860' => 'chi', 'Carub.0004s1347' => 'cru', 'Carub.0004s1960' => 'cru', 'Carub.0005s2880' => 'cru', 'Carub.0006s0107' => 'cru', 'Carub.0008s2015' => 'cru', 'Carub.0008s2016' => 'cru', 'Carub.0008s2017' => 'cru', 'Ca_01315_v3' => 'car', 'Ca_05063_v3' => 'car', 'Ca_10231_v3' => 'car', 'Ca_10913_v3' => 'car', 'Ca_19156_v3' => 'car', 'Ca_23644_v3' => 'car', 'Ca_26735_v3' => 'car', 'Cc01_g13130' => 'ccan', 'Cc02_g21690' => 'ccan', 'Cc03_g03600' => 'ccan', 'Cc06_g02510' => 'ccan', 'CDE02G1265' => 'cde', 'CDE05G0415' => 'cde', 'CDE08G1082' => 'cde', 'Cfa005780' => 'cfa', 'Cfa011522' => 'cfa', 'Cfa011523' => 'cfa', 'Cfa015627' => 'cfa', 'Cfa017359' => 'cfa', 'Ciclev10005687m.g' => 'ccl', 'Ciclev10012173m.g' => 'ccl', 'Ciclev10021621m.g' => 'ccl', 'Ciclev10028968m.g' => 'ccl', 'Ciclev10029907m.g' => 'ccl', 'CiPaw.01G164800' => 'cil', 'CiPaw.07G083700' => 'cil', 'CiPaw.07G127000' => 'cil', 'CiPaw.07G136900' => 'cil', 'CiPaw.08G081700' => 'cil', 'CiPaw.09G194600' => 'cil', 'CiPaw.10G146500' => 'cil', 'CiPaw.13G091500' => 'cil', 'CiPaw.13G091600' => 'cil', 'ClCG00G003390' => 'cla', 'ClCG01G007220' => 'cla', 'ClCG03G001370' => 'cla', 'ClCG04G008100' => 'cla', 'ClCG06G006110' => 'cla', 'ClCG06G006130' => 'cla', 'ClCG10G021210' => 'cla', 'COL.COLO4_07648' => 'col', 'COL.COLO4_07650' => 'col', 'COL.COLO4_07651' => 'col', 'COL.COLO4_14780' => 'col', 'COL.COLO4_18546' => 'col', 'COL.COLO4_18547' => 'col', 'COL.COLO4_23103' => 'col', 'COL.COLO4_30419' => 'col', 'COL.COLO4_34232' => 'col', 'Cpa.g.sc169.20' => 'cpa', 'Cpa.g.sc57.45' => 'cpa', 'Cpa.g.sc58.124' => 'cpa', 'Cpa.g.sc58.125' => 'cpa', 'Cpa.g.sc81.118' => 'cpa', 'Cpa.g.sc81.119' => 'cpa', 'Cre12.g524700' => 'cre', 'CsaV3_1G034430' => 'csa', 'CsaV3_1G034440' => 'csa', 'CsaV3_1G034450' => 'csa', 'CsaV3_3G034830' => 'csa', 'CsaV3_4G025090' => 'csa', 'CsaV3_5G018660' => 'csa', 'CsaV3_6G038160' => 'csa', 'CSS0003447' => 'camsi', 'CSS0017840' => 'camsi', 'CSS0019260' => 'camsi', 'CSS0040375' => 'camsi', 'CSS0042533' => 'camsi', 'DCAR_005960' => 'dca', 'DCAR_012104' => 'dca', 'DCAR_012105' => 'dca', 'DCAR_012293' => 'dca', 'DCAR_015632' => 'dca', 'DCAR_024602' => 'dca', 'DCAR_028752' => 'dca', 'Dinv06261' => 'din', 'Dinv13982' => 'din', 'Dinv17029' => 'din', 'Dinv18463' => 'din', 'Dinv33181' => 'din', 'Dinv35585' => 'din', 'Dinv37161' => 'din', 'Dinv42977' => 'din', 'Dinv43122' => 'din', 'Dinv44517' => 'din', 'Duzib093G0256' => 'dzi', 'Duzib106G1254' => 'dzi', 'Duzib128G1789' => 'dzi', 'Duzib133G0633' => 'dzi', 'Duzib138G0510' => 'dzi', 'Duzib150G1084' => 'dzi', 'Duzib168G0488' => 'dzi', 'Duzib168G1523' => 'dzi', 'Duzib170G0133' => 'dzi', 'ECA234G1433' => 'eca', 'ECA236G1432' => 'eca', 'ECA236G2256' => 'eca', 'ECA236G2365' => 'eca', 'ECA236G4830' => 'eca', 'ECA248G1505' => 'eca', 'EL10Ac3g06431' => 'bvu', 'EL10Ac5g12577' => 'bvu', 'EL10Ac6g13533' => 'bvu', 'EL10Ac7g16045' => 'bvu', 'Eucgr.A01281' => 'egr', 'Eucgr.B02326' => 'egr', 'Eucgr.H03532' => 'egr', 'Eucgr.K00553' => 'egr', 'Eucgr.K03116' => 'egr', 'FAN02G3963' => 'fan', 'FAN05G0438' => 'fan', 'FAN09G2434' => 'fan', 'FAN12G3984' => 'fan', 'FAN14G0798' => 'fan', 'FAN17G0652' => 'fan', 'FAN19G1988' => 'fan', 'FAN22G0632' => 'fan', 'FAN23G0387' => 'fan', 'FAN26G1323' => 'fan', 'FAN28G0666' => 'fan', 'FvH4_1g26080' => 'fve', 'FvH4_3g36780' => 'fve', 'FvH4_4g15270' => 'fve', 'FvH4_6g13490' => 'fve', 'Glyma.01G098700' => 'gma', 'Glyma.03G065900' => 'gma', 'Glyma.03G073754' => 'gma', 'Glyma.03G073758' => 'gma', 'Glyma.03G083200' => 'gma', 'Glyma.03G225500' => 'gma', 'Glyma.05G037766' => 'gma', 'Glyma.07G133500' => 'gma', 'Glyma.10G139400' => 'gma', 'Glyma.10G248900' => 'gma', 'Glyma.11G137800' => 'gma', 'Glyma.12G061300' => 'gma', 'Glyma.13G337900' => 'gma', 'Glyma.15G036600' => 'gma', 'Glyma.18G182800' => 'gma', 'Glyma.19G222500' => 'gma', 'Glyma.20G144800' => 'gma', 'Gohir.A01G222000' => 'ghi', 'Gohir.A03G044000' => 'ghi', 'Gohir.A03G044100' => 'ghi', 'Gohir.A04G083100' => 'ghi', 'Gohir.A07G127200' => 'ghi', 'Gohir.A07G132400' => 'ghi', 'Gohir.A08G000700' => 'ghi', 'Gohir.A11G327300' => 'ghi', 'Gohir.D01G211500' => 'ghi', 'Gohir.D03G123400' => 'ghi', 'Gohir.D03G123500' => 'ghi', 'Gohir.D04G121800' => 'ghi', 'Gohir.D07G131500' => 'ghi', 'Gohir.D07G136600' => 'ghi', 'Gohir.D08G011600' => 'ghi', 'Gohir.D11G346200' => 'ghi', 'Gorai.001G142800' => 'gra', 'Gorai.001G148700' => 'gra', 'Gorai.002G257300' => 'gra', 'Gorai.003G130000' => 'gra', 'Gorai.003G130100' => 'gra', 'Gorai.004G005300' => 'gra', 'Gorai.007G376500' => 'gra', 'Gorai.012G104700' => 'gra', 'GSVIVG01017946001' => 'vvi', 'GSVIVG01024928001' => 'vvi', 'GSVIVG01028227001' => 'vvi', 'GSVIVG01034151001' => 'vvi', 'HanXRQChr05g0135031' => 'han', 'HanXRQChr05g0135041' => 'han', 'HanXRQChr05g0140021' => 'han', 'HanXRQChr06g0178981' => 'han', 'HanXRQChr07g0188251' => 'han', 'HanXRQChr08g0235311' => 'han', 'HanXRQChr09g0271011' => 'han', 'HanXRQChr10g0293321' => 'han', 'HanXRQChr13g0388171' => 'han', 'Haze_00916' => 'cav', 'Haze_05063' => 'cav', 'Haze_20814' => 'cav', 'Haze_24128' => 'cav', 'Hma1.2p1_0745F.1_g212010' => 'hma', 'Hma1.2p1_0757F.1_g213260' => 'hma', 'Hma1.2p1_0936F.1_g238840' => 'hma', 'Hma1.2p1_1735F.1_g299890' => 'hma', 'Hma1.2p1_1861F.1_g305685' => 'hma', 'HPP92_003397' => 'vpl', 'HPP92_012597' => 'vpl', 'HPP92_015520' => 'vpl', 'HPP92_015539' => 'vpl', 'HPP92_020373' => 'vpl', 'Hund04938' => 'sun', 'Hund10677' => 'sun', 'Hund11033' => 'sun', 'Hund12155' => 'sun', 'Lalb_Chr01g0022551' => 'lal', 'Lalb_Chr03g0042341' => 'lal', 'Lalb_Chr07g0192931' => 'lal', 'Lalb_Chr12g0209551' => 'lal', 'Lalb_Chr19g0125251' => 'lal', 'Lalb_Chr19g0137891' => 'lal', 'Lalb_Chr21g0304641' => 'lal', 'Lalb_Chr21g0309881' => 'lal', 'Lj1A5T12' => 'lonja', 'Lj1C148G10' => 'lonja', 'Lj2A93T83' => 'lonja', 'Lj3A738G68' => 'lonja', 'Lj3C966T1' => 'lonja', 'Lj3g0018958' => 'lja', 'Lj3g0021831' => 'lja', 'Lj3g0025443' => 'lja', 'Lj4g0026809' => 'lja', 'Lj5g0012558' => 'lja', 'Lj5g0021586' => 'lja', 'Lsat_1_v5_gn_5_156840' => 'lsa', 'Lsat_1_v5_gn_8_73460' => 'lsa', 'Lsat_1_v5_gn_8_73481' => 'lsa', 'Lsat_1_v5_gn_9_31601' => 'lsa', 'Lsat_1_v5_gn_9_77320' => 'lsa', 'Manes.01G171300' => 'mes', 'Manes.01G171400' => 'mes', 'Manes.01G236100' => 'mes', 'Manes.02G130500' => 'mes', 'Manes.02G130600' => 'mes', 'Manes.03G180200' => 'mes', 'Manes.05G007000' => 'mes', 'Manes.08G084400' => 'mes', 'Manes.09G092600' => 'mes', 'Manes.15G027900' => 'mes', 'MBI04_g40948_MAGBIO' => 'mbi', 'MBI14_g12123_MAGBIO' => 'mbi', 'MBI18_g28915_MAGBIO' => 'mbi', 'MCO09G053' => 'mco', 'MCO11G782' => 'mco', 'MCO15G215' => 'mco', 'MD03G1088500' => 'mdo', 'MD03G1088600' => 'mdo', 'MD04G1130800' => 'mdo', 'MD09G1291700' => 'mdo', 'MD11G1097500' => 'mdo', 'MD11G1097600' => 'mdo', 'MD12G1143900' => 'mdo', 'MD13G1191400' => 'mdo', 'MD16G1191500' => 'mdo', 'Medtr1g085570' => 'mtr', 'Medtr1g104610' => 'mtr', 'Medtr2g097520' => 'mtr', 'Medtr4g021800' => 'mtr', 'Medtr4g021825' => 'mtr', 'Medtr4g064270' => 'mtr', 'Medtr4g064380' => 'mtr', 'Medtr7g062150' => 'mtr', 'MELO3C003138.2' => 'cme', 'MELO3C005187.2' => 'cme', 'MELO3C009252.2' => 'cme', 'MELO3C014481.2' => 'cme', 'MELO3C020616.2' => 'cme', 'MELO3C020617.2' => 'cme', 'MELO3C020618.2' => 'cme', 'Migut.G00328' => 'egut', 'Migut.J00320' => 'egut', 'Migut.L01000' => 'egut', 'Migut.L01953' => 'egut', 'MSTRG.10253' => 'ama', 'MSTRG.19077' => 'ama', 'MSTRG.26780' => 'ama', 'MSTRG.4023' => 'ama', 'MSTRG.5655' => 'ama', 'MSTRG.9992' => 'ama', 'Nitab4.5_0000043g0310' => 'nta', 'Nitab4.5_0000463g0080' => 'nta', 'Nitab4.5_0000705g0170' => 'nta', 'Nitab4.5_0001326g0060' => 'nta', 'Nitab4.5_0001628g0030' => 'nta', 'Nitab4.5_0002103g0110' => 'nta', 'Nitab4.5_0002946g0030' => 'nta', 'Nitab4.5_0004639g0030' => 'nta', 'Nn2g11149' => 'nnu', 'Nn2g13389' => 'nnu', 'Nn4g25326' => 'nnu', 'Nn4g26290' => 'nnu', 'Nn5g29865' => 'nnu', 'Oeu004163.1' => 'oeu', 'Oeu006901.1' => 'oeu', 'Oeu010096.1' => 'oeu', 'Oeu024340.1' => 'oeu', 'Oeu048369.1' => 'oeu', 'Os01g0973000' => 'osa', 'Os03g0273800' => 'osa', 'Os03g0701200' => 'osa', 'Os03g0834050' => 'osa', 'Os07g0634400' => 'osa', 'Peaxi162Scf00092g01414' => 'pax', 'Peaxi162Scf00165g00818' => 'pax', 'Peaxi162Scf00309g00516' => 'pax', 'Peaxi162Scf00774g00218' => 'pax', 'PGR004G1824' => 'pgr', 'PGR004G2606' => 'pgr', 'PGR031G2716' => 'pgr', 'PGR102G2460' => 'pgr', 'PGR142G2599' => 'pgr', 'PGSC0003DMG400000843' => 'stu', 'PGSC0003DMG400008829' => 'stu', 'PGSC0003DMG400030418' => 'stu', 'PGSC0003DMG400031834' => 'stu', 'PGSC0003DMG401028300' => 'stu', 'PGSC0003DMG402028300' => 'stu', 'Phvul.001G219300' => 'pvu', 'Phvul.007G056000' => 'pvu', 'Phvul.007G208000' => 'pvu', 'Phvul.008G119500' => 'pvu', 'Phvul.010G011200' => 'pvu', 'Phvul.010G014800' => 'pvu', 'Phvul.011G062900' => 'pvu', 'Phvul.L007043' => 'pvu', 'Potri.001G242300' => 'ptr', 'Potri.002G185300' => 'ptr', 'Potri.006G086900' => 'ptr', 'Potri.008G151700' => 'ptr', 'Potri.009G033500' => 'ptr', 'Potri.010G089300' => 'ptr', 'Potri.014G110800' => 'ptr', 'Pp3c27_8130' => 'ppa', 'Pp3c6_27410' => 'ppa', 'PRCOL_00001659' => 'pco', 'PRCOL_00001927' => 'pco', 'PRCOL_00003649' => 'pco', 'Prupe.1G011600' => 'ppe', 'Prupe.3G000800' => 'ppe', 'Prupe.3G001100' => 'ppe', 'Prupe.6G072700' => 'ppe', 'Prupe.6G072800' => 'ppe', 'Prupe.6G257300' => 'ppe', 'Prupe.8G033000' => 'ppe', 'Psat0s2633g0080' => 'psa', 'Psat0s3396g0080' => 'psa', 'Psat0s3396g0200' => 'psa', 'Psat3g139080' => 'psa', 'Psat5g285080' => 'psa', 'Psat6g157760' => 'psa', 'Psat6g208440' => 'psa', 'Psat7g215320' => 'psa', 'Psat7g215400' => 'psa', 'Psat7g235600' => 'psa', 'Psat7g235760' => 'psa', 'PSO063G4603' => 'pso', 'PSO210G0182' => 'pso', 'PSO210G0196' => 'pso', 'PSO339G0394' => 'pso', 'PSO339G4127' => 'pso', 'PSO513G0064' => 'pso', 'PSO761G0079' => 'pso', 'QL01p031003' => 'qlo', 'QL01p031078' => 'qlo', 'QL06p003004' => 'qlo', 'QL07p048731' => 'qlo', 'QL09p037427' => 'qlo', 'RcHm_v2.0_Chr3g0466361' => 'rch', 'RcHm_v2.0_Chr3g0485571' => 'rch', 'RcHm_v2.0_Chr4g0416551' => 'rch', 'RcHm_v2.0_Chr5g0065831' => 'rch', 'Rhsim01G0230500' => 'rsi', 'Rhsim05G0194000' => 'rsi', 'Rhsim08G0250400' => 'rsi', 'Sabra02G0131000' => 'sbr', 'Sabra06G0066300' => 'sbr', 'Sabra08G0115500' => 'sbr', 'Sabra09G0023900' => 'sbr', 'Sabra10G0054000' => 'sbr', 'Sabra14G0081500' => 'sbr', 'Sabra16G0147100' => 'sbr', 'SalBow2G2957' => 'sbo', 'SalBow4G3320' => 'sbo', 'SalBow8G1894' => 'sbo', 'Sc07g0007950' => 'sci', 'Sc12g0001360' => 'sci', 'Sc13g0004330' => 'sci', 'Sc20g0005010' => 'sci', 'Sed0000361' => 'sed', 'Sed0001706' => 'sed', 'Sed0002422' => 'sed', 'Sed0004029' => 'sed', 'Sed0004602' => 'sed', 'Sed0004943' => 'sed', 'Sed0008646' => 'sed', 'Sed0023313' => 'sed', 'Sed0024843' => 'sed', 'SEGI_00081' => 'sgi', 'SEGI_00947' => 'sgi', 'SEGI_04046' => 'sgi', 'SEGI_06880' => 'sgi', 'SEGI_09736' => 'sgi', 'SEGI_12741' => 'sgi', 'SEGI_14530' => 'sgi', 'SEGI_20705' => 'sgi', 'SEGI_26088' => 'sgi', 'SEGI_28323' => 'sgi', 'SEGI_33343' => 'sgi', 'SGA_v2.0_scaffold126G33775' => 'sas', 'SGA_v2.0_scaffold2G01337' => 'sas', 'SGA_v2.0_scaffold38G15006' => 'sas', 'SGA_v2.0_scaffold39G15264' => 'sas', 'SGA_v2.0_scaffold453G51880' => 'sas', 'SHI12696' => 'shi', 'SMO367G1096' => 'smo', 'Solyc01g068630.3' => 'sly', 'Solyc05g011880.3' => 'sly', 'Solyc06g076300.3' => 'sly', 'Solyc09g010940.4' => 'sly', 'Solyc09g075890.3' => 'sly', 'Sopen01g030560' => 'spe', 'Sopen05g006630' => 'spe', 'Sopen06g032720' => 'spe', 'Sopen09g005660' => 'spe', 'Sopen09g030690' => 'spe', 'Sp4g14540' => 'spa', 'Sp4g20030' => 'spa', 'Sp5g01320' => 'spa', 'Sp6g21170' => 'spa', 'Sp6g21180' => 'spa', 'Sp6g21190' => 'spa', 'Sp6g40220' => 'spa', 'TAR362G0122' => 'tar', 'TAR362G1338' => 'tar', 'TAR369G0590' => 'tar', 'TAR371G0824' => 'tar', 'TAR622G1429' => 'tar', 'TAR623G0734' => 'tar', 'TAR625G0441' => 'tar', 'TAR629G0976' => 'tar', 'TAR633G1195' => 'tar', 'TAR636G2660' => 'tar', 'THA.LOC104799440' => 'tha', 'THA.LOC104800966' => 'tha', 'THA.LOC104806559' => 'tha', 'THA.LOC104810765' => 'tha', 'THA.LOC104816266' => 'tha', 'THA.LOC104817419' => 'tha', 'THA.LOC104827021' => 'tha', 'Thecc.01G327400' => 'tca', 'Thecc.04G229200' => 'tca', 'Thecc.05G037400' => 'tca', 'Thecc.09G318600' => 'tca', 'Thecc.09G318700' => 'tca', 'Thhalv10006238m.g' => 'esa', 'Thhalv10014321m.g' => 'esa', 'Thhalv10014335m.g' => 'esa', 'Thhalv10015826m.g' => 'esa', 'Thhalv10017107m.g' => 'esa', 'Thhalv10017180m.g' => 'esa', 'Thhalv10029339m.g' => 'esa', 'TPR.G1699' => 'tpr', 'TPR.G23609' => 'tpr', 'TPR.G3081' => 'tpr', 'TPR.G40397' => 'tpr', 'TPR.G5522' => 'tpr', 'TPR.G5618' => 'tpr', 'TPR.G5626' => 'tpr', 'TWI09G1632' => 'twi', 'TWI23G1230' => 'twi', 'TWI53G1064' => 'twi', 'TWI59G0751' => 'twi', 'TWI74G0947' => 'twi', 'TWI77G0337' => 'twi', 'TWI79G1254' => 'twi', 'unitig_0.g2341' => 'ugi', 'unitig_26.g10006' => 'ugi', 'unitig_26.g10008' => 'ugi', 'unitig_26.g9192' => 'ugi', 'vmacro14547' => 'vma', 'vmacro15333' => 'vma', 'vmacro18743' => 'vma', 'vmacro20166' => 'vma', 'VMungo0331G0523' => 'vmu', 'VMungo0331G1202' => 'vmu', 'VMungo0720G1228' => 'vmu', 'VMungo0720G1514' => 'vmu', 'VMungo1080G0169' => 'vmu', 'VMungo1127G1475' => 'vmu', 'VMungo1383G1208' => 'vmu', 'VMungo1383G1698' => 'vmu', 'Zm00001eb012270' => 'zma', 'Zm00001eb054100' => 'zma', 'Zm00001eb063350' => 'zma', 'Zm00001eb328560' => 'zma', 'Zm00001eb342820' => 'zma', 'Zm00001eb362210' => 'zma', 'Zm00001eb397730' => 'zma', 'Zm00001eb399750' => 'zma' ), 'gf_id' => 'HOM05D000959', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000959' ), 'data_identifier' => 'HOM05D000959', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000959', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '622', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p07100' => 'bna', 'A03p11720' => 'bna', 'A05p08300' => 'bna', 'A05p13380' => 'bna', 'A09p54130' => 'bna', 'A10p16690' => 'bna', 'A10p16700' => 'bna', 'A10p33390' => 'bna', 'Aa31LG10G16020' => 'aar', 'Aa31LG1G11810' => 'aar', 'Aa31LG1G11830' => 'aar', 'Aa31LG1G22510' => 'aar', 'Aa31LG5G4890' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5793' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2310' => 'aag', 'Actinidia08499' => 'ach', 'Actinidia11262' => 'ach', 'Actinidia23926' => 'ach', 'Actinidia34420' => 'ach', 'Actinidia36970' => 'ach', 'Ah.02g111220' => 'amhyb', 'Ah.15g097750' => 'amhyb', 'AL4G27500' => 'aly', 'AL6G11470' => 'aly', 'AL8G35950' => 'aly', 'AL8G35960' => 'aly', 'AL8G35970' => 'aly', 'Aqoxy1G00912' => 'aox', 'Aqoxy2G02253' => 'aox', 'Aqoxy2G02411' => 'aox', 'Aqoxy5G00485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BZ66YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K8ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM4FUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6BF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HFV7XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25JBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0YNNV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MAKK6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P70IT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP2Z6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V61LZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YWP64R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3S9AI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7PGHH' => 'arhy', 'AT2G32150' => 'ath', 'AT3G62040' => 'ath', 'AT5G02230' => 'ath', 'AT5G59480' => 'ath', 'AT5G59490' => 'ath', 'ATR0332G060' => 'atr', 'ATR0559G190' => 'atr', 'ATR0693G294' => 'atr', 'Atru.chr3.3975' => 'acertr', 'Atru.chr3.3976' => 'acertr', 'Atru.chr3.3977' => 'acertr', 'Atru.chr4.2498' => 'acertr', 'Atru.chr5.838' => 'acertr', 'Atru.chr8.1990' => 'acertr', 'Atru.chr8.1991' => 'acertr', 'Atru.chr8.1992' => 'acertr', 'AUR62001759' => 'cqu', 'AUR62009545' => 'cqu', 'AUR62010474' => 'cqu', 'AUR62025820' => 'cqu', 'AUR62030422' => 'cqu', 'AUR62033605' => 'cqu', 'AUR62038615' => 'cqu', 'AUR62041347' => 'cqu', 'BcaB01g04574' => 'bca', 'BcaB02g09263' => 'bca', 'BcaB02g10453' => 'bca', 'BcaB05g22513' => 'bca', 'BcaB08g36253' => 'bca', 'BcaB08g36254' => 'bca', 'BcaC01g06519' => 'bca', 'BcaC02g11889' => 'bca', 'BcaC03g14010' => 'bca', 'BcaC03g18439' => 'bca', 'BcaC04g19765' => 'bca', 'BcaC09g48432' => 'bca', 'BcaNung07302' => 'bca', 'BolC2t06040H' => 'bol', 'BolC2t07346H' => 'bol', 'BolC3t13817H' => 'bol', 'BolC4t22625H' => 'bol', 'BolC4t23297H' => 'bol', 'BolC8t51278H' => 'bol', 'BolC9t58050H' => 'bol', 'BolC9t58051H' => 'bol', 'BolC9t60163H' => 'bol', 'BraA02t04712Z' => 'bra', 'BraA02t05791Z' => 'bra', 'BraA03t10483Z' => 'bra', 'BraA05t19795Z' => 'bra', 'BraA05t20276Z' => 'bra', 'BraA09t40827Z' => 'bra', 'BraA10t43750Z' => 'bra', 'BraA10t43751Z' => 'bra', 'BraA10t45370Z' => 'bra', 'C02p00400' => 'bna', 'C02p12460' => 'bna', 'C03p13680' => 'bna', 'C04p10270' => 'bna', 'C04p17500' => 'bna', 'C08p37010' => 'bna', 'C09p51880' => 'bna', 'C09p51890' => 'bna', 'C09p74300' => 'bna', 'CAN.G179.26' => 'can', 'CAN.G3384.1' => 'can', 'CAN.G394.68' => 'can', 'CAN.G907.13' => 'can', 'CANSAT11G0012' => 'cansat', 'CANSAT25G1586' => 'cansat', 'CANSAT35G0735' => 'cansat', 'CANSAT54G0556' => 'cansat', 'CANSAT64G0356' => 'cansat', 'CANSAT78G2042' => 'cansat', 'CARHR125920' => 'chi', 'CARHR131910' => 'chi', 'CARHR172390' => 'chi', 'CARHR211140' => 'chi', 'CARHR285850' => 'chi', 'CARHR285860' => 'chi', 'Carub.0004s1347' => 'cru', 'Carub.0004s1960' => 'cru', 'Carub.0005s2880' => 'cru', 'Carub.0006s0107' => 'cru', 'Carub.0008s2015' => 'cru', 'Carub.0008s2016' => 'cru', 'Carub.0008s2017' => 'cru', 'Ca_01315_v3' => 'car', 'Ca_05063_v3' => 'car', 'Ca_10231_v3' => 'car', 'Ca_10913_v3' => 'car', 'Ca_19156_v3' => 'car', 'Ca_23644_v3' => 'car', 'Ca_26735_v3' => 'car', 'Cc01_g13130' => 'ccan', 'Cc02_g21690' => 'ccan', 'Cc03_g03600' => 'ccan', 'Cc06_g02510' => 'ccan', 'CDE02G1265' => 'cde', 'CDE05G0415' => 'cde', 'CDE08G1082' => 'cde', 'Cfa005780' => 'cfa', 'Cfa011522' => 'cfa', 'Cfa011523' => 'cfa', 'Cfa015627' => 'cfa', 'Cfa017359' => 'cfa', 'Ciclev10005687m.g' => 'ccl', 'Ciclev10012173m.g' => 'ccl', 'Ciclev10021621m.g' => 'ccl', 'Ciclev10028968m.g' => 'ccl', 'Ciclev10029907m.g' => 'ccl', 'CiPaw.01G164800' => 'cil', 'CiPaw.07G083700' => 'cil', 'CiPaw.07G127000' => 'cil', 'CiPaw.07G136900' => 'cil', 'CiPaw.08G081700' => 'cil', 'CiPaw.09G194600' => 'cil', 'CiPaw.10G146500' => 'cil', 'CiPaw.13G091500' => 'cil', 'CiPaw.13G091600' => 'cil', 'ClCG00G003390' => 'cla', 'ClCG01G007220' => 'cla', 'ClCG03G001370' => 'cla', 'ClCG04G008100' => 'cla', 'ClCG06G006110' => 'cla', 'ClCG06G006130' => 'cla', 'ClCG10G021210' => 'cla', 'COL.COLO4_07648' => 'col', 'COL.COLO4_07650' => 'col', 'COL.COLO4_07651' => 'col', 'COL.COLO4_14780' => 'col', 'COL.COLO4_18546' => 'col', 'COL.COLO4_18547' => 'col', 'COL.COLO4_23103' => 'col', 'COL.COLO4_30419' => 'col', 'COL.COLO4_34232' => 'col', 'Cpa.g.sc169.20' => 'cpa', 'Cpa.g.sc57.45' => 'cpa', 'Cpa.g.sc58.124' => 'cpa', 'Cpa.g.sc58.125' => 'cpa', 'Cpa.g.sc81.118' => 'cpa', 'Cpa.g.sc81.119' => 'cpa', 'Cre12.g524700' => 'cre', 'CsaV3_1G034430' => 'csa', 'CsaV3_1G034440' => 'csa', 'CsaV3_1G034450' => 'csa', 'CsaV3_3G034830' => 'csa', 'CsaV3_4G025090' => 'csa', 'CsaV3_5G018660' => 'csa', 'CsaV3_6G038160' => 'csa', 'CSS0003447' => 'camsi', 'CSS0017840' => 'camsi', 'CSS0019260' => 'camsi', 'CSS0040375' => 'camsi', 'CSS0042533' => 'camsi', 'DCAR_005960' => 'dca', 'DCAR_012104' => 'dca', 'DCAR_012105' => 'dca', 'DCAR_012293' => 'dca', 'DCAR_015632' => 'dca', 'DCAR_024602' => 'dca', 'DCAR_028752' => 'dca', 'Dinv06261' => 'din', 'Dinv13982' => 'din', 'Dinv17029' => 'din', 'Dinv18463' => 'din', 'Dinv33181' => 'din', 'Dinv35585' => 'din', 'Dinv37161' => 'din', 'Dinv42977' => 'din', 'Dinv43122' => 'din', 'Dinv44517' => 'din', 'Duzib093G0256' => 'dzi', 'Duzib106G1254' => 'dzi', 'Duzib128G1789' => 'dzi', 'Duzib133G0633' => 'dzi', 'Duzib138G0510' => 'dzi', 'Duzib150G1084' => 'dzi', 'Duzib168G0488' => 'dzi', 'Duzib168G1523' => 'dzi', 'Duzib170G0133' => 'dzi', 'ECA234G1433' => 'eca', 'ECA236G1432' => 'eca', 'ECA236G2256' => 'eca', 'ECA236G2365' => 'eca', 'ECA236G4830' => 'eca', 'ECA248G1505' => 'eca', 'EL10Ac3g06431' => 'bvu', 'EL10Ac5g12577' => 'bvu', 'EL10Ac6g13533' => 'bvu', 'EL10Ac7g16045' => 'bvu', 'Eucgr.A01281' => 'egr', 'Eucgr.B02326' => 'egr', 'Eucgr.H03532' => 'egr', 'Eucgr.K00553' => 'egr', 'Eucgr.K03116' => 'egr', 'FAN02G3963' => 'fan', 'FAN05G0438' => 'fan', 'FAN09G2434' => 'fan', 'FAN12G3984' => 'fan', 'FAN14G0798' => 'fan', 'FAN17G0652' => 'fan', 'FAN19G1988' => 'fan', 'FAN22G0632' => 'fan', 'FAN23G0387' => 'fan', 'FAN26G1323' => 'fan', 'FAN28G0666' => 'fan', 'FvH4_1g26080' => 'fve', 'FvH4_3g36780' => 'fve', 'FvH4_4g15270' => 'fve', 'FvH4_6g13490' => 'fve', 'Glyma.01G098700' => 'gma', 'Glyma.03G065900' => 'gma', 'Glyma.03G073754' => 'gma', 'Glyma.03G073758' => 'gma', 'Glyma.03G083200' => 'gma', 'Glyma.03G225500' => 'gma', 'Glyma.05G037766' => 'gma', 'Glyma.07G133500' => 'gma', 'Glyma.10G139400' => 'gma', 'Glyma.10G248900' => 'gma', 'Glyma.11G137800' => 'gma', 'Glyma.12G061300' => 'gma', 'Glyma.13G337900' => 'gma', 'Glyma.15G036600' => 'gma', 'Glyma.18G182800' => 'gma', 'Glyma.19G222500' => 'gma', 'Glyma.20G144800' => 'gma', 'Gohir.A01G222000' => 'ghi', 'Gohir.A03G044000' => 'ghi', 'Gohir.A03G044100' => 'ghi', 'Gohir.A04G083100' => 'ghi', 'Gohir.A07G127200' => 'ghi', 'Gohir.A07G132400' => 'ghi', 'Gohir.A08G000700' => 'ghi', 'Gohir.A11G327300' => 'ghi', 'Gohir.D01G211500' => 'ghi', 'Gohir.D03G123400' => 'ghi', 'Gohir.D03G123500' => 'ghi', 'Gohir.D04G121800' => 'ghi', 'Gohir.D07G131500' => 'ghi', 'Gohir.D07G136600' => 'ghi', 'Gohir.D08G011600' => 'ghi', 'Gohir.D11G346200' => 'ghi', 'Gorai.001G142800' => 'gra', 'Gorai.001G148700' => 'gra', 'Gorai.002G257300' => 'gra', 'Gorai.003G130000' => 'gra', 'Gorai.003G130100' => 'gra', 'Gorai.004G005300' => 'gra', 'Gorai.007G376500' => 'gra', 'Gorai.012G104700' => 'gra', 'GSVIVG01017946001' => 'vvi', 'GSVIVG01024928001' => 'vvi', 'GSVIVG01028227001' => 'vvi', 'GSVIVG01034151001' => 'vvi', 'HanXRQChr05g0135031' => 'han', 'HanXRQChr05g0135041' => 'han', 'HanXRQChr05g0140021' => 'han', 'HanXRQChr06g0178981' => 'han', 'HanXRQChr07g0188251' => 'han', 'HanXRQChr08g0235311' => 'han', 'HanXRQChr09g0271011' => 'han', 'HanXRQChr10g0293321' => 'han', 'HanXRQChr13g0388171' => 'han', 'Haze_00916' => 'cav', 'Haze_05063' => 'cav', 'Haze_20814' => 'cav', 'Haze_24128' => 'cav', 'Hma1.2p1_0745F.1_g212010' => 'hma', 'Hma1.2p1_0757F.1_g213260' => 'hma', 'Hma1.2p1_0936F.1_g238840' => 'hma', 'Hma1.2p1_1735F.1_g299890' => 'hma', 'Hma1.2p1_1861F.1_g305685' => 'hma', 'HPP92_003397' => 'vpl', 'HPP92_012597' => 'vpl', 'HPP92_015520' => 'vpl', 'HPP92_015539' => 'vpl', 'HPP92_020373' => 'vpl', 'Hund04938' => 'sun', 'Hund10677' => 'sun', 'Hund11033' => 'sun', 'Hund12155' => 'sun', 'Lalb_Chr01g0022551' => 'lal', 'Lalb_Chr03g0042341' => 'lal', 'Lalb_Chr07g0192931' => 'lal', 'Lalb_Chr12g0209551' => 'lal', 'Lalb_Chr19g0125251' => 'lal', 'Lalb_Chr19g0137891' => 'lal', 'Lalb_Chr21g0304641' => 'lal', 'Lalb_Chr21g0309881' => 'lal', 'Lj1A5T12' => 'lonja', 'Lj1C148G10' => 'lonja', 'Lj2A93T83' => 'lonja', 'Lj3A738G68' => 'lonja', 'Lj3C966T1' => 'lonja', 'Lj3g0018958' => 'lja', 'Lj3g0021831' => 'lja', 'Lj3g0025443' => 'lja', 'Lj4g0026809' => 'lja', 'Lj5g0012558' => 'lja', 'Lj5g0021586' => 'lja', 'Lsat_1_v5_gn_5_156840' => 'lsa', 'Lsat_1_v5_gn_8_73460' => 'lsa', 'Lsat_1_v5_gn_8_73481' => 'lsa', 'Lsat_1_v5_gn_9_31601' => 'lsa', 'Lsat_1_v5_gn_9_77320' => 'lsa', 'Manes.01G171300' => 'mes', 'Manes.01G171400' => 'mes', 'Manes.01G236100' => 'mes', 'Manes.02G130500' => 'mes', 'Manes.02G130600' => 'mes', 'Manes.03G180200' => 'mes', 'Manes.05G007000' => 'mes', 'Manes.08G084400' => 'mes', 'Manes.09G092600' => 'mes', 'Manes.15G027900' => 'mes', 'MBI04_g40948_MAGBIO' => 'mbi', 'MBI14_g12123_MAGBIO' => 'mbi', 'MBI18_g28915_MAGBIO' => 'mbi', 'MCO09G053' => 'mco', 'MCO11G782' => 'mco', 'MCO15G215' => 'mco', 'MD03G1088500' => 'mdo', 'MD03G1088600' => 'mdo', 'MD04G1130800' => 'mdo', 'MD09G1291700' => 'mdo', 'MD11G1097500' => 'mdo', 'MD11G1097600' => 'mdo', 'MD12G1143900' => 'mdo', 'MD13G1191400' => 'mdo', 'MD16G1191500' => 'mdo', 'Medtr1g085570' => 'mtr', 'Medtr1g104610' => 'mtr', 'Medtr2g097520' => 'mtr', 'Medtr4g021800' => 'mtr', 'Medtr4g021825' => 'mtr', 'Medtr4g064270' => 'mtr', 'Medtr4g064380' => 'mtr', 'Medtr7g062150' => 'mtr', 'MELO3C003138.2' => 'cme', 'MELO3C005187.2' => 'cme', 'MELO3C009252.2' => 'cme', 'MELO3C014481.2' => 'cme', 'MELO3C020616.2' => 'cme', 'MELO3C020617.2' => 'cme', 'MELO3C020618.2' => 'cme', 'Migut.G00328' => 'egut', 'Migut.J00320' => 'egut', 'Migut.L01000' => 'egut', 'Migut.L01953' => 'egut', 'MSTRG.10253' => 'ama', 'MSTRG.19077' => 'ama', 'MSTRG.26780' => 'ama', 'MSTRG.4023' => 'ama', 'MSTRG.5655' => 'ama', 'MSTRG.9992' => 'ama', 'Nitab4.5_0000043g0310' => 'nta', 'Nitab4.5_0000463g0080' => 'nta', 'Nitab4.5_0000705g0170' => 'nta', 'Nitab4.5_0001326g0060' => 'nta', 'Nitab4.5_0001628g0030' => 'nta', 'Nitab4.5_0002103g0110' => 'nta', 'Nitab4.5_0002946g0030' => 'nta', 'Nitab4.5_0004639g0030' => 'nta', 'Nn2g11149' => 'nnu', 'Nn2g13389' => 'nnu', 'Nn4g25326' => 'nnu', 'Nn4g26290' => 'nnu', 'Nn5g29865' => 'nnu', 'Oeu004163.1' => 'oeu', 'Oeu006901.1' => 'oeu', 'Oeu010096.1' => 'oeu', 'Oeu024340.1' => 'oeu', 'Oeu048369.1' => 'oeu', 'Os01g0973000' => 'osa', 'Os03g0273800' => 'osa', 'Os03g0701200' => 'osa', 'Os03g0834050' => 'osa', 'Os07g0634400' => 'osa', 'Peaxi162Scf00092g01414' => 'pax', 'Peaxi162Scf00165g00818' => 'pax', 'Peaxi162Scf00309g00516' => 'pax', 'Peaxi162Scf00774g00218' => 'pax', 'PGR004G1824' => 'pgr', 'PGR004G2606' => 'pgr', 'PGR031G2716' => 'pgr', 'PGR102G2460' => 'pgr', 'PGR142G2599' => 'pgr', 'PGSC0003DMG400000843' => 'stu', 'PGSC0003DMG400008829' => 'stu', 'PGSC0003DMG400030418' => 'stu', 'PGSC0003DMG400031834' => 'stu', 'PGSC0003DMG401028300' => 'stu', 'PGSC0003DMG402028300' => 'stu', 'Phvul.001G219300' => 'pvu', 'Phvul.007G056000' => 'pvu', 'Phvul.007G208000' => 'pvu', 'Phvul.008G119500' => 'pvu', 'Phvul.010G011200' => 'pvu', 'Phvul.010G014800' => 'pvu', 'Phvul.011G062900' => 'pvu', 'Phvul.L007043' => 'pvu', 'Potri.001G242300' => 'ptr', 'Potri.002G185300' => 'ptr', 'Potri.006G086900' => 'ptr', 'Potri.008G151700' => 'ptr', 'Potri.009G033500' => 'ptr', 'Potri.010G089300' => 'ptr', 'Potri.014G110800' => 'ptr', 'Pp3c27_8130' => 'ppa', 'Pp3c6_27410' => 'ppa', 'PRCOL_00001659' => 'pco', 'PRCOL_00001927' => 'pco', 'PRCOL_00003649' => 'pco', 'Prupe.1G011600' => 'ppe', 'Prupe.3G000800' => 'ppe', 'Prupe.3G001100' => 'ppe', 'Prupe.6G072700' => 'ppe', 'Prupe.6G072800' => 'ppe', 'Prupe.6G257300' => 'ppe', 'Prupe.8G033000' => 'ppe', 'Psat0s2633g0080' => 'psa', 'Psat0s3396g0080' => 'psa', 'Psat0s3396g0200' => 'psa', 'Psat3g139080' => 'psa', 'Psat5g285080' => 'psa', 'Psat6g157760' => 'psa', 'Psat6g208440' => 'psa', 'Psat7g215320' => 'psa', 'Psat7g215400' => 'psa', 'Psat7g235600' => 'psa', 'Psat7g235760' => 'psa', 'PSO063G4603' => 'pso', 'PSO210G0182' => 'pso', 'PSO210G0196' => 'pso', 'PSO339G0394' => 'pso', 'PSO339G4127' => 'pso', 'PSO513G0064' => 'pso', 'PSO761G0079' => 'pso', 'QL01p031003' => 'qlo', 'QL01p031078' => 'qlo', 'QL06p003004' => 'qlo', 'QL07p048731' => 'qlo', 'QL09p037427' => 'qlo', 'RcHm_v2.0_Chr3g0466361' => 'rch', 'RcHm_v2.0_Chr3g0485571' => 'rch', 'RcHm_v2.0_Chr4g0416551' => 'rch', 'RcHm_v2.0_Chr5g0065831' => 'rch', 'Rhsim01G0230500' => 'rsi', 'Rhsim05G0194000' => 'rsi', 'Rhsim08G0250400' => 'rsi', 'Sabra02G0131000' => 'sbr', 'Sabra06G0066300' => 'sbr', 'Sabra08G0115500' => 'sbr', 'Sabra09G0023900' => 'sbr', 'Sabra10G0054000' => 'sbr', 'Sabra14G0081500' => 'sbr', 'Sabra16G0147100' => 'sbr', 'SalBow2G2957' => 'sbo', 'SalBow4G3320' => 'sbo', 'SalBow8G1894' => 'sbo', 'Sc07g0007950' => 'sci', 'Sc12g0001360' => 'sci', 'Sc13g0004330' => 'sci', 'Sc20g0005010' => 'sci', 'Sed0000361' => 'sed', 'Sed0001706' => 'sed', 'Sed0002422' => 'sed', 'Sed0004029' => 'sed', 'Sed0004602' => 'sed', 'Sed0004943' => 'sed', 'Sed0008646' => 'sed', 'Sed0023313' => 'sed', 'Sed0024843' => 'sed', 'SEGI_00081' => 'sgi', 'SEGI_00947' => 'sgi', 'SEGI_04046' => 'sgi', 'SEGI_06880' => 'sgi', 'SEGI_09736' => 'sgi', 'SEGI_12741' => 'sgi', 'SEGI_14530' => 'sgi', 'SEGI_20705' => 'sgi', 'SEGI_26088' => 'sgi', 'SEGI_28323' => 'sgi', 'SEGI_33343' => 'sgi', 'SGA_v2.0_scaffold126G33775' => 'sas', 'SGA_v2.0_scaffold2G01337' => 'sas', 'SGA_v2.0_scaffold38G15006' => 'sas', 'SGA_v2.0_scaffold39G15264' => 'sas', 'SGA_v2.0_scaffold453G51880' => 'sas', 'SHI12696' => 'shi', 'SMO367G1096' => 'smo', 'Solyc01g068630.3' => 'sly', 'Solyc05g011880.3' => 'sly', 'Solyc06g076300.3' => 'sly', 'Solyc09g010940.4' => 'sly', 'Solyc09g075890.3' => 'sly', 'Sopen01g030560' => 'spe', 'Sopen05g006630' => 'spe', 'Sopen06g032720' => 'spe', 'Sopen09g005660' => 'spe', 'Sopen09g030690' => 'spe', 'Sp4g14540' => 'spa', 'Sp4g20030' => 'spa', 'Sp5g01320' => 'spa', 'Sp6g21170' => 'spa', 'Sp6g21180' => 'spa', 'Sp6g21190' => 'spa', 'Sp6g40220' => 'spa', 'TAR362G0122' => 'tar', 'TAR362G1338' => 'tar', 'TAR369G0590' => 'tar', 'TAR371G0824' => 'tar', 'TAR622G1429' => 'tar', 'TAR623G0734' => 'tar', 'TAR625G0441' => 'tar', 'TAR629G0976' => 'tar', 'TAR633G1195' => 'tar', 'TAR636G2660' => 'tar', 'THA.LOC104799440' => 'tha', 'THA.LOC104800966' => 'tha', 'THA.LOC104806559' => 'tha', 'THA.LOC104810765' => 'tha', 'THA.LOC104816266' => 'tha', 'THA.LOC104817419' => 'tha', 'THA.LOC104827021' => 'tha', 'Thecc.01G327400' => 'tca', 'Thecc.04G229200' => 'tca', 'Thecc.05G037400' => 'tca', 'Thecc.09G318600' => 'tca', 'Thecc.09G318700' => 'tca', 'Thhalv10006238m.g' => 'esa', 'Thhalv10014321m.g' => 'esa', 'Thhalv10014335m.g' => 'esa', 'Thhalv10015826m.g' => 'esa', 'Thhalv10017107m.g' => 'esa', 'Thhalv10017180m.g' => 'esa', 'Thhalv10029339m.g' => 'esa', 'TPR.G1699' => 'tpr', 'TPR.G23609' => 'tpr', 'TPR.G3081' => 'tpr', 'TPR.G40397' => 'tpr', 'TPR.G5522' => 'tpr', 'TPR.G5618' => 'tpr', 'TPR.G5626' => 'tpr', 'TWI09G1632' => 'twi', 'TWI23G1230' => 'twi', 'TWI53G1064' => 'twi', 'TWI59G0751' => 'twi', 'TWI74G0947' => 'twi', 'TWI77G0337' => 'twi', 'TWI79G1254' => 'twi', 'unitig_0.g2341' => 'ugi', 'unitig_26.g10006' => 'ugi', 'unitig_26.g10008' => 'ugi', 'unitig_26.g9192' => 'ugi', 'vmacro14547' => 'vma', 'vmacro15333' => 'vma', 'vmacro18743' => 'vma', 'vmacro20166' => 'vma', 'VMungo0331G0523' => 'vmu', 'VMungo0331G1202' => 'vmu', 'VMungo0720G1228' => 'vmu', 'VMungo0720G1514' => 'vmu', 'VMungo1080G0169' => 'vmu', 'VMungo1127G1475' => 'vmu', 'VMungo1383G1208' => 'vmu', 'VMungo1383G1698' => 'vmu', 'Zm00001eb012270' => 'zma', 'Zm00001eb054100' => 'zma', 'Zm00001eb063350' => 'zma', 'Zm00001eb328560' => 'zma', 'Zm00001eb342820' => 'zma', 'Zm00001eb362210' => 'zma', 'Zm00001eb397730' => 'zma', 'Zm00001eb399750' => 'zma' ) $gf_id = 'HOM05D000959' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000959' ) $data_identifier = 'HOM05D000959' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 5, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 5, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 10, 'mbi' => (int) 3, 'mco' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 2, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 3, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 11, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399750' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000959', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '622', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p07100' => 'bna', 'A03p11720' => 'bna', 'A05p08300' => 'bna', 'A05p13380' => 'bna', 'A09p54130' => 'bna', 'A10p16690' => 'bna', 'A10p16700' => 'bna', 'A10p33390' => 'bna', 'Aa31LG10G16020' => 'aar', 'Aa31LG1G11810' => 'aar', 'Aa31LG1G11830' => 'aar', 'Aa31LG1G22510' => 'aar', 'Aa31LG5G4890' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5793' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2310' => 'aag', 'Actinidia08499' => 'ach', 'Actinidia11262' => 'ach', 'Actinidia23926' => 'ach', 'Actinidia34420' => 'ach', 'Actinidia36970' => 'ach', 'Ah.02g111220' => 'amhyb', 'Ah.15g097750' => 'amhyb', 'AL4G27500' => 'aly', 'AL6G11470' => 'aly', 'AL8G35950' => 'aly', 'AL8G35960' => 'aly', 'AL8G35970' => 'aly', 'Aqoxy1G00912' => 'aox', 'Aqoxy2G02253' => 'aox', 'Aqoxy2G02411' => 'aox', 'Aqoxy5G00485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BZ66YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K8ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM4FUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6BF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HFV7XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25JBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0YNNV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MAKK6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P70IT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP2Z6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V61LZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YWP64R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3S9AI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7PGHH' => 'arhy', 'AT2G32150' => 'ath', 'AT3G62040' => 'ath', 'AT5G02230' => 'ath', 'AT5G59480' => 'ath', 'AT5G59490' => 'ath', 'ATR0332G060' => 'atr', 'ATR0559G190' => 'atr', 'ATR0693G294' => 'atr', 'Atru.chr3.3975' => 'acertr', 'Atru.chr3.3976' => 'acertr', 'Atru.chr3.3977' => 'acertr', 'Atru.chr4.2498' => 'acertr', 'Atru.chr5.838' => 'acertr', 'Atru.chr8.1990' => 'acertr', 'Atru.chr8.1991' => 'acertr', 'Atru.chr8.1992' => 'acertr', 'AUR62001759' => 'cqu', 'AUR62009545' => 'cqu', 'AUR62010474' => 'cqu', 'AUR62025820' => 'cqu', 'AUR62030422' => 'cqu', 'AUR62033605' => 'cqu', 'AUR62038615' => 'cqu', 'AUR62041347' => 'cqu', 'BcaB01g04574' => 'bca', 'BcaB02g09263' => 'bca', 'BcaB02g10453' => 'bca', 'BcaB05g22513' => 'bca', 'BcaB08g36253' => 'bca', 'BcaB08g36254' => 'bca', 'BcaC01g06519' => 'bca', 'BcaC02g11889' => 'bca', 'BcaC03g14010' => 'bca', 'BcaC03g18439' => 'bca', 'BcaC04g19765' => 'bca', 'BcaC09g48432' => 'bca', 'BcaNung07302' => 'bca', 'BolC2t06040H' => 'bol', 'BolC2t07346H' => 'bol', 'BolC3t13817H' => 'bol', 'BolC4t22625H' => 'bol', 'BolC4t23297H' => 'bol', 'BolC8t51278H' => 'bol', 'BolC9t58050H' => 'bol', 'BolC9t58051H' => 'bol', 'BolC9t60163H' => 'bol', 'BraA02t04712Z' => 'bra', 'BraA02t05791Z' => 'bra', 'BraA03t10483Z' => 'bra', 'BraA05t19795Z' => 'bra', 'BraA05t20276Z' => 'bra', 'BraA09t40827Z' => 'bra', 'BraA10t43750Z' => 'bra', 'BraA10t43751Z' => 'bra', 'BraA10t45370Z' => 'bra', 'C02p00400' => 'bna', 'C02p12460' => 'bna', 'C03p13680' => 'bna', 'C04p10270' => 'bna', 'C04p17500' => 'bna', 'C08p37010' => 'bna', 'C09p51880' => 'bna', 'C09p51890' => 'bna', 'C09p74300' => 'bna', 'CAN.G179.26' => 'can', 'CAN.G3384.1' => 'can', 'CAN.G394.68' => 'can', 'CAN.G907.13' => 'can', 'CANSAT11G0012' => 'cansat', 'CANSAT25G1586' => 'cansat', 'CANSAT35G0735' => 'cansat', 'CANSAT54G0556' => 'cansat', 'CANSAT64G0356' => 'cansat', 'CANSAT78G2042' => 'cansat', 'CARHR125920' => 'chi', 'CARHR131910' => 'chi', 'CARHR172390' => 'chi', 'CARHR211140' => 'chi', 'CARHR285850' => 'chi', 'CARHR285860' => 'chi', 'Carub.0004s1347' => 'cru', 'Carub.0004s1960' => 'cru', 'Carub.0005s2880' => 'cru', 'Carub.0006s0107' => 'cru', 'Carub.0008s2015' => 'cru', 'Carub.0008s2016' => 'cru', 'Carub.0008s2017' => 'cru', 'Ca_01315_v3' => 'car', 'Ca_05063_v3' => 'car', 'Ca_10231_v3' => 'car', 'Ca_10913_v3' => 'car', 'Ca_19156_v3' => 'car', 'Ca_23644_v3' => 'car', 'Ca_26735_v3' => 'car', 'Cc01_g13130' => 'ccan', 'Cc02_g21690' => 'ccan', 'Cc03_g03600' => 'ccan', 'Cc06_g02510' => 'ccan', 'CDE02G1265' => 'cde', 'CDE05G0415' => 'cde', 'CDE08G1082' => 'cde', 'Cfa005780' => 'cfa', 'Cfa011522' => 'cfa', 'Cfa011523' => 'cfa', 'Cfa015627' => 'cfa', 'Cfa017359' => 'cfa', 'Ciclev10005687m.g' => 'ccl', 'Ciclev10012173m.g' => 'ccl', 'Ciclev10021621m.g' => 'ccl', 'Ciclev10028968m.g' => 'ccl', 'Ciclev10029907m.g' => 'ccl', 'CiPaw.01G164800' => 'cil', 'CiPaw.07G083700' => 'cil', 'CiPaw.07G127000' => 'cil', 'CiPaw.07G136900' => 'cil', 'CiPaw.08G081700' => 'cil', 'CiPaw.09G194600' => 'cil', 'CiPaw.10G146500' => 'cil', 'CiPaw.13G091500' => 'cil', 'CiPaw.13G091600' => 'cil', 'ClCG00G003390' => 'cla', 'ClCG01G007220' => 'cla', 'ClCG03G001370' => 'cla', 'ClCG04G008100' => 'cla', 'ClCG06G006110' => 'cla', 'ClCG06G006130' => 'cla', 'ClCG10G021210' => 'cla', 'COL.COLO4_07648' => 'col', 'COL.COLO4_07650' => 'col', 'COL.COLO4_07651' => 'col', 'COL.COLO4_14780' => 'col', 'COL.COLO4_18546' => 'col', 'COL.COLO4_18547' => 'col', 'COL.COLO4_23103' => 'col', 'COL.COLO4_30419' => 'col', 'COL.COLO4_34232' => 'col', 'Cpa.g.sc169.20' => 'cpa', 'Cpa.g.sc57.45' => 'cpa', 'Cpa.g.sc58.124' => 'cpa', 'Cpa.g.sc58.125' => 'cpa', 'Cpa.g.sc81.118' => 'cpa', 'Cpa.g.sc81.119' => 'cpa', 'Cre12.g524700' => 'cre', 'CsaV3_1G034430' => 'csa', 'CsaV3_1G034440' => 'csa', 'CsaV3_1G034450' => 'csa', 'CsaV3_3G034830' => 'csa', 'CsaV3_4G025090' => 'csa', 'CsaV3_5G018660' => 'csa', 'CsaV3_6G038160' => 'csa', 'CSS0003447' => 'camsi', 'CSS0017840' => 'camsi', 'CSS0019260' => 'camsi', 'CSS0040375' => 'camsi', 'CSS0042533' => 'camsi', 'DCAR_005960' => 'dca', 'DCAR_012104' => 'dca', 'DCAR_012105' => 'dca', 'DCAR_012293' => 'dca', 'DCAR_015632' => 'dca', 'DCAR_024602' => 'dca', 'DCAR_028752' => 'dca', 'Dinv06261' => 'din', 'Dinv13982' => 'din', 'Dinv17029' => 'din', 'Dinv18463' => 'din', 'Dinv33181' => 'din', 'Dinv35585' => 'din', 'Dinv37161' => 'din', 'Dinv42977' => 'din', 'Dinv43122' => 'din', 'Dinv44517' => 'din', 'Duzib093G0256' => 'dzi', 'Duzib106G1254' => 'dzi', 'Duzib128G1789' => 'dzi', 'Duzib133G0633' => 'dzi', 'Duzib138G0510' => 'dzi', 'Duzib150G1084' => 'dzi', 'Duzib168G0488' => 'dzi', 'Duzib168G1523' => 'dzi', 'Duzib170G0133' => 'dzi', 'ECA234G1433' => 'eca', 'ECA236G1432' => 'eca', 'ECA236G2256' => 'eca', 'ECA236G2365' => 'eca', 'ECA236G4830' => 'eca', 'ECA248G1505' => 'eca', 'EL10Ac3g06431' => 'bvu', 'EL10Ac5g12577' => 'bvu', 'EL10Ac6g13533' => 'bvu', 'EL10Ac7g16045' => 'bvu', 'Eucgr.A01281' => 'egr', 'Eucgr.B02326' => 'egr', 'Eucgr.H03532' => 'egr', 'Eucgr.K00553' => 'egr', 'Eucgr.K03116' => 'egr', 'FAN02G3963' => 'fan', 'FAN05G0438' => 'fan', 'FAN09G2434' => 'fan', 'FAN12G3984' => 'fan', 'FAN14G0798' => 'fan', 'FAN17G0652' => 'fan', 'FAN19G1988' => 'fan', 'FAN22G0632' => 'fan', 'FAN23G0387' => 'fan', 'FAN26G1323' => 'fan', 'FAN28G0666' => 'fan', 'FvH4_1g26080' => 'fve', 'FvH4_3g36780' => 'fve', 'FvH4_4g15270' => 'fve', 'FvH4_6g13490' => 'fve', 'Glyma.01G098700' => 'gma', 'Glyma.03G065900' => 'gma', 'Glyma.03G073754' => 'gma', 'Glyma.03G073758' => 'gma', 'Glyma.03G083200' => 'gma', 'Glyma.03G225500' => 'gma', 'Glyma.05G037766' => 'gma', 'Glyma.07G133500' => 'gma', 'Glyma.10G139400' => 'gma', 'Glyma.10G248900' => 'gma', 'Glyma.11G137800' => 'gma', 'Glyma.12G061300' => 'gma', 'Glyma.13G337900' => 'gma', 'Glyma.15G036600' => 'gma', 'Glyma.18G182800' => 'gma', 'Glyma.19G222500' => 'gma', 'Glyma.20G144800' => 'gma', 'Gohir.A01G222000' => 'ghi', 'Gohir.A03G044000' => 'ghi', 'Gohir.A03G044100' => 'ghi', 'Gohir.A04G083100' => 'ghi', 'Gohir.A07G127200' => 'ghi', 'Gohir.A07G132400' => 'ghi', 'Gohir.A08G000700' => 'ghi', 'Gohir.A11G327300' => 'ghi', 'Gohir.D01G211500' => 'ghi', 'Gohir.D03G123400' => 'ghi', 'Gohir.D03G123500' => 'ghi', 'Gohir.D04G121800' => 'ghi', 'Gohir.D07G131500' => 'ghi', 'Gohir.D07G136600' => 'ghi', 'Gohir.D08G011600' => 'ghi', 'Gohir.D11G346200' => 'ghi', 'Gorai.001G142800' => 'gra', 'Gorai.001G148700' => 'gra', 'Gorai.002G257300' => 'gra', 'Gorai.003G130000' => 'gra', 'Gorai.003G130100' => 'gra', 'Gorai.004G005300' => 'gra', 'Gorai.007G376500' => 'gra', 'Gorai.012G104700' => 'gra', 'GSVIVG01017946001' => 'vvi', 'GSVIVG01024928001' => 'vvi', 'GSVIVG01028227001' => 'vvi', 'GSVIVG01034151001' => 'vvi', 'HanXRQChr05g0135031' => 'han', 'HanXRQChr05g0135041' => 'han', 'HanXRQChr05g0140021' => 'han', 'HanXRQChr06g0178981' => 'han', 'HanXRQChr07g0188251' => 'han', 'HanXRQChr08g0235311' => 'han', 'HanXRQChr09g0271011' => 'han', 'HanXRQChr10g0293321' => 'han', 'HanXRQChr13g0388171' => 'han', 'Haze_00916' => 'cav', 'Haze_05063' => 'cav', 'Haze_20814' => 'cav', 'Haze_24128' => 'cav', 'Hma1.2p1_0745F.1_g212010' => 'hma', 'Hma1.2p1_0757F.1_g213260' => 'hma', 'Hma1.2p1_0936F.1_g238840' => 'hma', 'Hma1.2p1_1735F.1_g299890' => 'hma', 'Hma1.2p1_1861F.1_g305685' => 'hma', 'HPP92_003397' => 'vpl', 'HPP92_012597' => 'vpl', 'HPP92_015520' => 'vpl', 'HPP92_015539' => 'vpl', 'HPP92_020373' => 'vpl', 'Hund04938' => 'sun', 'Hund10677' => 'sun', 'Hund11033' => 'sun', 'Hund12155' => 'sun', 'Lalb_Chr01g0022551' => 'lal', 'Lalb_Chr03g0042341' => 'lal', 'Lalb_Chr07g0192931' => 'lal', 'Lalb_Chr12g0209551' => 'lal', 'Lalb_Chr19g0125251' => 'lal', 'Lalb_Chr19g0137891' => 'lal', 'Lalb_Chr21g0304641' => 'lal', 'Lalb_Chr21g0309881' => 'lal', 'Lj1A5T12' => 'lonja', 'Lj1C148G10' => 'lonja', 'Lj2A93T83' => 'lonja', 'Lj3A738G68' => 'lonja', 'Lj3C966T1' => 'lonja', 'Lj3g0018958' => 'lja', 'Lj3g0021831' => 'lja', 'Lj3g0025443' => 'lja', 'Lj4g0026809' => 'lja', 'Lj5g0012558' => 'lja', 'Lj5g0021586' => 'lja', 'Lsat_1_v5_gn_5_156840' => 'lsa', 'Lsat_1_v5_gn_8_73460' => 'lsa', 'Lsat_1_v5_gn_8_73481' => 'lsa', 'Lsat_1_v5_gn_9_31601' => 'lsa', 'Lsat_1_v5_gn_9_77320' => 'lsa', 'Manes.01G171300' => 'mes', 'Manes.01G171400' => 'mes', 'Manes.01G236100' => 'mes', 'Manes.02G130500' => 'mes', 'Manes.02G130600' => 'mes', 'Manes.03G180200' => 'mes', 'Manes.05G007000' => 'mes', 'Manes.08G084400' => 'mes', 'Manes.09G092600' => 'mes', 'Manes.15G027900' => 'mes', 'MBI04_g40948_MAGBIO' => 'mbi', 'MBI14_g12123_MAGBIO' => 'mbi', 'MBI18_g28915_MAGBIO' => 'mbi', 'MCO09G053' => 'mco', 'MCO11G782' => 'mco', 'MCO15G215' => 'mco', 'MD03G1088500' => 'mdo', 'MD03G1088600' => 'mdo', 'MD04G1130800' => 'mdo', 'MD09G1291700' => 'mdo', 'MD11G1097500' => 'mdo', 'MD11G1097600' => 'mdo', 'MD12G1143900' => 'mdo', 'MD13G1191400' => 'mdo', 'MD16G1191500' => 'mdo', 'Medtr1g085570' => 'mtr', 'Medtr1g104610' => 'mtr', 'Medtr2g097520' => 'mtr', 'Medtr4g021800' => 'mtr', 'Medtr4g021825' => 'mtr', 'Medtr4g064270' => 'mtr', 'Medtr4g064380' => 'mtr', 'Medtr7g062150' => 'mtr', 'MELO3C003138.2' => 'cme', 'MELO3C005187.2' => 'cme', 'MELO3C009252.2' => 'cme', 'MELO3C014481.2' => 'cme', 'MELO3C020616.2' => 'cme', 'MELO3C020617.2' => 'cme', 'MELO3C020618.2' => 'cme', 'Migut.G00328' => 'egut', 'Migut.J00320' => 'egut', 'Migut.L01000' => 'egut', 'Migut.L01953' => 'egut', 'MSTRG.10253' => 'ama', 'MSTRG.19077' => 'ama', 'MSTRG.26780' => 'ama', 'MSTRG.4023' => 'ama', 'MSTRG.5655' => 'ama', 'MSTRG.9992' => 'ama', 'Nitab4.5_0000043g0310' => 'nta', 'Nitab4.5_0000463g0080' => 'nta', 'Nitab4.5_0000705g0170' => 'nta', 'Nitab4.5_0001326g0060' => 'nta', 'Nitab4.5_0001628g0030' => 'nta', 'Nitab4.5_0002103g0110' => 'nta', 'Nitab4.5_0002946g0030' => 'nta', 'Nitab4.5_0004639g0030' => 'nta', 'Nn2g11149' => 'nnu', 'Nn2g13389' => 'nnu', 'Nn4g25326' => 'nnu', 'Nn4g26290' => 'nnu', 'Nn5g29865' => 'nnu', 'Oeu004163.1' => 'oeu', 'Oeu006901.1' => 'oeu', 'Oeu010096.1' => 'oeu', 'Oeu024340.1' => 'oeu', 'Oeu048369.1' => 'oeu', 'Os01g0973000' => 'osa', 'Os03g0273800' => 'osa', 'Os03g0701200' => 'osa', 'Os03g0834050' => 'osa', 'Os07g0634400' => 'osa', 'Peaxi162Scf00092g01414' => 'pax', 'Peaxi162Scf00165g00818' => 'pax', 'Peaxi162Scf00309g00516' => 'pax', 'Peaxi162Scf00774g00218' => 'pax', 'PGR004G1824' => 'pgr', 'PGR004G2606' => 'pgr', 'PGR031G2716' => 'pgr', 'PGR102G2460' => 'pgr', 'PGR142G2599' => 'pgr', 'PGSC0003DMG400000843' => 'stu', 'PGSC0003DMG400008829' => 'stu', 'PGSC0003DMG400030418' => 'stu', 'PGSC0003DMG400031834' => 'stu', 'PGSC0003DMG401028300' => 'stu', 'PGSC0003DMG402028300' => 'stu', 'Phvul.001G219300' => 'pvu', 'Phvul.007G056000' => 'pvu', 'Phvul.007G208000' => 'pvu', 'Phvul.008G119500' => 'pvu', 'Phvul.010G011200' => 'pvu', 'Phvul.010G014800' => 'pvu', 'Phvul.011G062900' => 'pvu', 'Phvul.L007043' => 'pvu', 'Potri.001G242300' => 'ptr', 'Potri.002G185300' => 'ptr', 'Potri.006G086900' => 'ptr', 'Potri.008G151700' => 'ptr', 'Potri.009G033500' => 'ptr', 'Potri.010G089300' => 'ptr', 'Potri.014G110800' => 'ptr', 'Pp3c27_8130' => 'ppa', 'Pp3c6_27410' => 'ppa', 'PRCOL_00001659' => 'pco', 'PRCOL_00001927' => 'pco', 'PRCOL_00003649' => 'pco', 'Prupe.1G011600' => 'ppe', 'Prupe.3G000800' => 'ppe', 'Prupe.3G001100' => 'ppe', 'Prupe.6G072700' => 'ppe', 'Prupe.6G072800' => 'ppe', 'Prupe.6G257300' => 'ppe', 'Prupe.8G033000' => 'ppe', 'Psat0s2633g0080' => 'psa', 'Psat0s3396g0080' => 'psa', 'Psat0s3396g0200' => 'psa', 'Psat3g139080' => 'psa', 'Psat5g285080' => 'psa', 'Psat6g157760' => 'psa', 'Psat6g208440' => 'psa', 'Psat7g215320' => 'psa', 'Psat7g215400' => 'psa', 'Psat7g235600' => 'psa', 'Psat7g235760' => 'psa', 'PSO063G4603' => 'pso', 'PSO210G0182' => 'pso', 'PSO210G0196' => 'pso', 'PSO339G0394' => 'pso', 'PSO339G4127' => 'pso', 'PSO513G0064' => 'pso', 'PSO761G0079' => 'pso', 'QL01p031003' => 'qlo', 'QL01p031078' => 'qlo', 'QL06p003004' => 'qlo', 'QL07p048731' => 'qlo', 'QL09p037427' => 'qlo', 'RcHm_v2.0_Chr3g0466361' => 'rch', 'RcHm_v2.0_Chr3g0485571' => 'rch', 'RcHm_v2.0_Chr4g0416551' => 'rch', 'RcHm_v2.0_Chr5g0065831' => 'rch', 'Rhsim01G0230500' => 'rsi', 'Rhsim05G0194000' => 'rsi', 'Rhsim08G0250400' => 'rsi', 'Sabra02G0131000' => 'sbr', 'Sabra06G0066300' => 'sbr', 'Sabra08G0115500' => 'sbr', 'Sabra09G0023900' => 'sbr', 'Sabra10G0054000' => 'sbr', 'Sabra14G0081500' => 'sbr', 'Sabra16G0147100' => 'sbr', 'SalBow2G2957' => 'sbo', 'SalBow4G3320' => 'sbo', 'SalBow8G1894' => 'sbo', 'Sc07g0007950' => 'sci', 'Sc12g0001360' => 'sci', 'Sc13g0004330' => 'sci', 'Sc20g0005010' => 'sci', 'Sed0000361' => 'sed', 'Sed0001706' => 'sed', 'Sed0002422' => 'sed', 'Sed0004029' => 'sed', 'Sed0004602' => 'sed', 'Sed0004943' => 'sed', 'Sed0008646' => 'sed', 'Sed0023313' => 'sed', 'Sed0024843' => 'sed', 'SEGI_00081' => 'sgi', 'SEGI_00947' => 'sgi', 'SEGI_04046' => 'sgi', 'SEGI_06880' => 'sgi', 'SEGI_09736' => 'sgi', 'SEGI_12741' => 'sgi', 'SEGI_14530' => 'sgi', 'SEGI_20705' => 'sgi', 'SEGI_26088' => 'sgi', 'SEGI_28323' => 'sgi', 'SEGI_33343' => 'sgi', 'SGA_v2.0_scaffold126G33775' => 'sas', 'SGA_v2.0_scaffold2G01337' => 'sas', 'SGA_v2.0_scaffold38G15006' => 'sas', 'SGA_v2.0_scaffold39G15264' => 'sas', 'SGA_v2.0_scaffold453G51880' => 'sas', 'SHI12696' => 'shi', 'SMO367G1096' => 'smo', 'Solyc01g068630.3' => 'sly', 'Solyc05g011880.3' => 'sly', 'Solyc06g076300.3' => 'sly', 'Solyc09g010940.4' => 'sly', 'Solyc09g075890.3' => 'sly', 'Sopen01g030560' => 'spe', 'Sopen05g006630' => 'spe', 'Sopen06g032720' => 'spe', 'Sopen09g005660' => 'spe', 'Sopen09g030690' => 'spe', 'Sp4g14540' => 'spa', 'Sp4g20030' => 'spa', 'Sp5g01320' => 'spa', 'Sp6g21170' => 'spa', 'Sp6g21180' => 'spa', 'Sp6g21190' => 'spa', 'Sp6g40220' => 'spa', 'TAR362G0122' => 'tar', 'TAR362G1338' => 'tar', 'TAR369G0590' => 'tar', 'TAR371G0824' => 'tar', 'TAR622G1429' => 'tar', 'TAR623G0734' => 'tar', 'TAR625G0441' => 'tar', 'TAR629G0976' => 'tar', 'TAR633G1195' => 'tar', 'TAR636G2660' => 'tar', 'THA.LOC104799440' => 'tha', 'THA.LOC104800966' => 'tha', 'THA.LOC104806559' => 'tha', 'THA.LOC104810765' => 'tha', 'THA.LOC104816266' => 'tha', 'THA.LOC104817419' => 'tha', 'THA.LOC104827021' => 'tha', 'Thecc.01G327400' => 'tca', 'Thecc.04G229200' => 'tca', 'Thecc.05G037400' => 'tca', 'Thecc.09G318600' => 'tca', 'Thecc.09G318700' => 'tca', 'Thhalv10006238m.g' => 'esa', 'Thhalv10014321m.g' => 'esa', 'Thhalv10014335m.g' => 'esa', 'Thhalv10015826m.g' => 'esa', 'Thhalv10017107m.g' => 'esa', 'Thhalv10017180m.g' => 'esa', 'Thhalv10029339m.g' => 'esa', 'TPR.G1699' => 'tpr', 'TPR.G23609' => 'tpr', 'TPR.G3081' => 'tpr', 'TPR.G40397' => 'tpr', 'TPR.G5522' => 'tpr', 'TPR.G5618' => 'tpr', 'TPR.G5626' => 'tpr', 'TWI09G1632' => 'twi', 'TWI23G1230' => 'twi', 'TWI53G1064' => 'twi', 'TWI59G0751' => 'twi', 'TWI74G0947' => 'twi', 'TWI77G0337' => 'twi', 'TWI79G1254' => 'twi', 'unitig_0.g2341' => 'ugi', 'unitig_26.g10006' => 'ugi', 'unitig_26.g10008' => 'ugi', 'unitig_26.g9192' => 'ugi', 'vmacro14547' => 'vma', 'vmacro15333' => 'vma', 'vmacro18743' => 'vma', 'vmacro20166' => 'vma', 'VMungo0331G0523' => 'vmu', 'VMungo0331G1202' => 'vmu', 'VMungo0720G1228' => 'vmu', 'VMungo0720G1514' => 'vmu', 'VMungo1080G0169' => 'vmu', 'VMungo1127G1475' => 'vmu', 'VMungo1383G1208' => 'vmu', 'VMungo1383G1698' => 'vmu', 'Zm00001eb012270' => 'zma', 'Zm00001eb054100' => 'zma', 'Zm00001eb063350' => 'zma', 'Zm00001eb328560' => 'zma', 'Zm00001eb342820' => 'zma', 'Zm00001eb362210' => 'zma', 'Zm00001eb397730' => 'zma', 'Zm00001eb399750' => 'zma' ), 'gf_id' => 'HOM05D000959', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000959' ), 'data_identifier' => 'HOM05D000959', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000959', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '622', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p07100' => 'bna', 'A03p11720' => 'bna', 'A05p08300' => 'bna', 'A05p13380' => 'bna', 'A09p54130' => 'bna', 'A10p16690' => 'bna', 'A10p16700' => 'bna', 'A10p33390' => 'bna', 'Aa31LG10G16020' => 'aar', 'Aa31LG1G11810' => 'aar', 'Aa31LG1G11830' => 'aar', 'Aa31LG1G22510' => 'aar', 'Aa31LG5G4890' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5793' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2310' => 'aag', 'Actinidia08499' => 'ach', 'Actinidia11262' => 'ach', 'Actinidia23926' => 'ach', 'Actinidia34420' => 'ach', 'Actinidia36970' => 'ach', 'Ah.02g111220' => 'amhyb', 'Ah.15g097750' => 'amhyb', 'AL4G27500' => 'aly', 'AL6G11470' => 'aly', 'AL8G35950' => 'aly', 'AL8G35960' => 'aly', 'AL8G35970' => 'aly', 'Aqoxy1G00912' => 'aox', 'Aqoxy2G02253' => 'aox', 'Aqoxy2G02411' => 'aox', 'Aqoxy5G00485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BZ66YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K8ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM4FUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6BF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HFV7XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25JBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0YNNV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MAKK6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P70IT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP2Z6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V61LZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YWP64R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3S9AI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7PGHH' => 'arhy', 'AT2G32150' => 'ath', 'AT3G62040' => 'ath', 'AT5G02230' => 'ath', 'AT5G59480' => 'ath', 'AT5G59490' => 'ath', 'ATR0332G060' => 'atr', 'ATR0559G190' => 'atr', 'ATR0693G294' => 'atr', 'Atru.chr3.3975' => 'acertr', 'Atru.chr3.3976' => 'acertr', 'Atru.chr3.3977' => 'acertr', 'Atru.chr4.2498' => 'acertr', 'Atru.chr5.838' => 'acertr', 'Atru.chr8.1990' => 'acertr', 'Atru.chr8.1991' => 'acertr', 'Atru.chr8.1992' => 'acertr', 'AUR62001759' => 'cqu', 'AUR62009545' => 'cqu', 'AUR62010474' => 'cqu', 'AUR62025820' => 'cqu', 'AUR62030422' => 'cqu', 'AUR62033605' => 'cqu', 'AUR62038615' => 'cqu', 'AUR62041347' => 'cqu', 'BcaB01g04574' => 'bca', 'BcaB02g09263' => 'bca', 'BcaB02g10453' => 'bca', 'BcaB05g22513' => 'bca', 'BcaB08g36253' => 'bca', 'BcaB08g36254' => 'bca', 'BcaC01g06519' => 'bca', 'BcaC02g11889' => 'bca', 'BcaC03g14010' => 'bca', 'BcaC03g18439' => 'bca', 'BcaC04g19765' => 'bca', 'BcaC09g48432' => 'bca', 'BcaNung07302' => 'bca', 'BolC2t06040H' => 'bol', 'BolC2t07346H' => 'bol', 'BolC3t13817H' => 'bol', 'BolC4t22625H' => 'bol', 'BolC4t23297H' => 'bol', 'BolC8t51278H' => 'bol', 'BolC9t58050H' => 'bol', 'BolC9t58051H' => 'bol', 'BolC9t60163H' => 'bol', 'BraA02t04712Z' => 'bra', 'BraA02t05791Z' => 'bra', 'BraA03t10483Z' => 'bra', 'BraA05t19795Z' => 'bra', 'BraA05t20276Z' => 'bra', 'BraA09t40827Z' => 'bra', 'BraA10t43750Z' => 'bra', 'BraA10t43751Z' => 'bra', 'BraA10t45370Z' => 'bra', 'C02p00400' => 'bna', 'C02p12460' => 'bna', 'C03p13680' => 'bna', 'C04p10270' => 'bna', 'C04p17500' => 'bna', 'C08p37010' => 'bna', 'C09p51880' => 'bna', 'C09p51890' => 'bna', 'C09p74300' => 'bna', 'CAN.G179.26' => 'can', 'CAN.G3384.1' => 'can', 'CAN.G394.68' => 'can', 'CAN.G907.13' => 'can', 'CANSAT11G0012' => 'cansat', 'CANSAT25G1586' => 'cansat', 'CANSAT35G0735' => 'cansat', 'CANSAT54G0556' => 'cansat', 'CANSAT64G0356' => 'cansat', 'CANSAT78G2042' => 'cansat', 'CARHR125920' => 'chi', 'CARHR131910' => 'chi', 'CARHR172390' => 'chi', 'CARHR211140' => 'chi', 'CARHR285850' => 'chi', 'CARHR285860' => 'chi', 'Carub.0004s1347' => 'cru', 'Carub.0004s1960' => 'cru', 'Carub.0005s2880' => 'cru', 'Carub.0006s0107' => 'cru', 'Carub.0008s2015' => 'cru', 'Carub.0008s2016' => 'cru', 'Carub.0008s2017' => 'cru', 'Ca_01315_v3' => 'car', 'Ca_05063_v3' => 'car', 'Ca_10231_v3' => 'car', 'Ca_10913_v3' => 'car', 'Ca_19156_v3' => 'car', 'Ca_23644_v3' => 'car', 'Ca_26735_v3' => 'car', 'Cc01_g13130' => 'ccan', 'Cc02_g21690' => 'ccan', 'Cc03_g03600' => 'ccan', 'Cc06_g02510' => 'ccan', 'CDE02G1265' => 'cde', 'CDE05G0415' => 'cde', 'CDE08G1082' => 'cde', 'Cfa005780' => 'cfa', 'Cfa011522' => 'cfa', 'Cfa011523' => 'cfa', 'Cfa015627' => 'cfa', 'Cfa017359' => 'cfa', 'Ciclev10005687m.g' => 'ccl', 'Ciclev10012173m.g' => 'ccl', 'Ciclev10021621m.g' => 'ccl', 'Ciclev10028968m.g' => 'ccl', 'Ciclev10029907m.g' => 'ccl', 'CiPaw.01G164800' => 'cil', 'CiPaw.07G083700' => 'cil', 'CiPaw.07G127000' => 'cil', 'CiPaw.07G136900' => 'cil', 'CiPaw.08G081700' => 'cil', 'CiPaw.09G194600' => 'cil', 'CiPaw.10G146500' => 'cil', 'CiPaw.13G091500' => 'cil', 'CiPaw.13G091600' => 'cil', 'ClCG00G003390' => 'cla', 'ClCG01G007220' => 'cla', 'ClCG03G001370' => 'cla', 'ClCG04G008100' => 'cla', 'ClCG06G006110' => 'cla', 'ClCG06G006130' => 'cla', 'ClCG10G021210' => 'cla', 'COL.COLO4_07648' => 'col', 'COL.COLO4_07650' => 'col', 'COL.COLO4_07651' => 'col', 'COL.COLO4_14780' => 'col', 'COL.COLO4_18546' => 'col', 'COL.COLO4_18547' => 'col', 'COL.COLO4_23103' => 'col', 'COL.COLO4_30419' => 'col', 'COL.COLO4_34232' => 'col', 'Cpa.g.sc169.20' => 'cpa', 'Cpa.g.sc57.45' => 'cpa', 'Cpa.g.sc58.124' => 'cpa', 'Cpa.g.sc58.125' => 'cpa', 'Cpa.g.sc81.118' => 'cpa', 'Cpa.g.sc81.119' => 'cpa', 'Cre12.g524700' => 'cre', 'CsaV3_1G034430' => 'csa', 'CsaV3_1G034440' => 'csa', 'CsaV3_1G034450' => 'csa', 'CsaV3_3G034830' => 'csa', 'CsaV3_4G025090' => 'csa', 'CsaV3_5G018660' => 'csa', 'CsaV3_6G038160' => 'csa', 'CSS0003447' => 'camsi', 'CSS0017840' => 'camsi', 'CSS0019260' => 'camsi', 'CSS0040375' => 'camsi', 'CSS0042533' => 'camsi', 'DCAR_005960' => 'dca', 'DCAR_012104' => 'dca', 'DCAR_012105' => 'dca', 'DCAR_012293' => 'dca', 'DCAR_015632' => 'dca', 'DCAR_024602' => 'dca', 'DCAR_028752' => 'dca', 'Dinv06261' => 'din', 'Dinv13982' => 'din', 'Dinv17029' => 'din', 'Dinv18463' => 'din', 'Dinv33181' => 'din', 'Dinv35585' => 'din', 'Dinv37161' => 'din', 'Dinv42977' => 'din', 'Dinv43122' => 'din', 'Dinv44517' => 'din', 'Duzib093G0256' => 'dzi', 'Duzib106G1254' => 'dzi', 'Duzib128G1789' => 'dzi', 'Duzib133G0633' => 'dzi', 'Duzib138G0510' => 'dzi', 'Duzib150G1084' => 'dzi', 'Duzib168G0488' => 'dzi', 'Duzib168G1523' => 'dzi', 'Duzib170G0133' => 'dzi', 'ECA234G1433' => 'eca', 'ECA236G1432' => 'eca', 'ECA236G2256' => 'eca', 'ECA236G2365' => 'eca', 'ECA236G4830' => 'eca', 'ECA248G1505' => 'eca', 'EL10Ac3g06431' => 'bvu', 'EL10Ac5g12577' => 'bvu', 'EL10Ac6g13533' => 'bvu', 'EL10Ac7g16045' => 'bvu', 'Eucgr.A01281' => 'egr', 'Eucgr.B02326' => 'egr', 'Eucgr.H03532' => 'egr', 'Eucgr.K00553' => 'egr', 'Eucgr.K03116' => 'egr', 'FAN02G3963' => 'fan', 'FAN05G0438' => 'fan', 'FAN09G2434' => 'fan', 'FAN12G3984' => 'fan', 'FAN14G0798' => 'fan', 'FAN17G0652' => 'fan', 'FAN19G1988' => 'fan', 'FAN22G0632' => 'fan', 'FAN23G0387' => 'fan', 'FAN26G1323' => 'fan', 'FAN28G0666' => 'fan', 'FvH4_1g26080' => 'fve', 'FvH4_3g36780' => 'fve', 'FvH4_4g15270' => 'fve', 'FvH4_6g13490' => 'fve', 'Glyma.01G098700' => 'gma', 'Glyma.03G065900' => 'gma', 'Glyma.03G073754' => 'gma', 'Glyma.03G073758' => 'gma', 'Glyma.03G083200' => 'gma', 'Glyma.03G225500' => 'gma', 'Glyma.05G037766' => 'gma', 'Glyma.07G133500' => 'gma', 'Glyma.10G139400' => 'gma', 'Glyma.10G248900' => 'gma', 'Glyma.11G137800' => 'gma', 'Glyma.12G061300' => 'gma', 'Glyma.13G337900' => 'gma', 'Glyma.15G036600' => 'gma', 'Glyma.18G182800' => 'gma', 'Glyma.19G222500' => 'gma', 'Glyma.20G144800' => 'gma', 'Gohir.A01G222000' => 'ghi', 'Gohir.A03G044000' => 'ghi', 'Gohir.A03G044100' => 'ghi', 'Gohir.A04G083100' => 'ghi', 'Gohir.A07G127200' => 'ghi', 'Gohir.A07G132400' => 'ghi', 'Gohir.A08G000700' => 'ghi', 'Gohir.A11G327300' => 'ghi', 'Gohir.D01G211500' => 'ghi', 'Gohir.D03G123400' => 'ghi', 'Gohir.D03G123500' => 'ghi', 'Gohir.D04G121800' => 'ghi', 'Gohir.D07G131500' => 'ghi', 'Gohir.D07G136600' => 'ghi', 'Gohir.D08G011600' => 'ghi', 'Gohir.D11G346200' => 'ghi', 'Gorai.001G142800' => 'gra', 'Gorai.001G148700' => 'gra', 'Gorai.002G257300' => 'gra', 'Gorai.003G130000' => 'gra', 'Gorai.003G130100' => 'gra', 'Gorai.004G005300' => 'gra', 'Gorai.007G376500' => 'gra', 'Gorai.012G104700' => 'gra', 'GSVIVG01017946001' => 'vvi', 'GSVIVG01024928001' => 'vvi', 'GSVIVG01028227001' => 'vvi', 'GSVIVG01034151001' => 'vvi', 'HanXRQChr05g0135031' => 'han', 'HanXRQChr05g0135041' => 'han', 'HanXRQChr05g0140021' => 'han', 'HanXRQChr06g0178981' => 'han', 'HanXRQChr07g0188251' => 'han', 'HanXRQChr08g0235311' => 'han', 'HanXRQChr09g0271011' => 'han', 'HanXRQChr10g0293321' => 'han', 'HanXRQChr13g0388171' => 'han', 'Haze_00916' => 'cav', 'Haze_05063' => 'cav', 'Haze_20814' => 'cav', 'Haze_24128' => 'cav', 'Hma1.2p1_0745F.1_g212010' => 'hma', 'Hma1.2p1_0757F.1_g213260' => 'hma', 'Hma1.2p1_0936F.1_g238840' => 'hma', 'Hma1.2p1_1735F.1_g299890' => 'hma', 'Hma1.2p1_1861F.1_g305685' => 'hma', 'HPP92_003397' => 'vpl', 'HPP92_012597' => 'vpl', 'HPP92_015520' => 'vpl', 'HPP92_015539' => 'vpl', 'HPP92_020373' => 'vpl', 'Hund04938' => 'sun', 'Hund10677' => 'sun', 'Hund11033' => 'sun', 'Hund12155' => 'sun', 'Lalb_Chr01g0022551' => 'lal', 'Lalb_Chr03g0042341' => 'lal', 'Lalb_Chr07g0192931' => 'lal', 'Lalb_Chr12g0209551' => 'lal', 'Lalb_Chr19g0125251' => 'lal', 'Lalb_Chr19g0137891' => 'lal', 'Lalb_Chr21g0304641' => 'lal', 'Lalb_Chr21g0309881' => 'lal', 'Lj1A5T12' => 'lonja', 'Lj1C148G10' => 'lonja', 'Lj2A93T83' => 'lonja', 'Lj3A738G68' => 'lonja', 'Lj3C966T1' => 'lonja', 'Lj3g0018958' => 'lja', 'Lj3g0021831' => 'lja', 'Lj3g0025443' => 'lja', 'Lj4g0026809' => 'lja', 'Lj5g0012558' => 'lja', 'Lj5g0021586' => 'lja', 'Lsat_1_v5_gn_5_156840' => 'lsa', 'Lsat_1_v5_gn_8_73460' => 'lsa', 'Lsat_1_v5_gn_8_73481' => 'lsa', 'Lsat_1_v5_gn_9_31601' => 'lsa', 'Lsat_1_v5_gn_9_77320' => 'lsa', 'Manes.01G171300' => 'mes', 'Manes.01G171400' => 'mes', 'Manes.01G236100' => 'mes', 'Manes.02G130500' => 'mes', 'Manes.02G130600' => 'mes', 'Manes.03G180200' => 'mes', 'Manes.05G007000' => 'mes', 'Manes.08G084400' => 'mes', 'Manes.09G092600' => 'mes', 'Manes.15G027900' => 'mes', 'MBI04_g40948_MAGBIO' => 'mbi', 'MBI14_g12123_MAGBIO' => 'mbi', 'MBI18_g28915_MAGBIO' => 'mbi', 'MCO09G053' => 'mco', 'MCO11G782' => 'mco', 'MCO15G215' => 'mco', 'MD03G1088500' => 'mdo', 'MD03G1088600' => 'mdo', 'MD04G1130800' => 'mdo', 'MD09G1291700' => 'mdo', 'MD11G1097500' => 'mdo', 'MD11G1097600' => 'mdo', 'MD12G1143900' => 'mdo', 'MD13G1191400' => 'mdo', 'MD16G1191500' => 'mdo', 'Medtr1g085570' => 'mtr', 'Medtr1g104610' => 'mtr', 'Medtr2g097520' => 'mtr', 'Medtr4g021800' => 'mtr', 'Medtr4g021825' => 'mtr', 'Medtr4g064270' => 'mtr', 'Medtr4g064380' => 'mtr', 'Medtr7g062150' => 'mtr', 'MELO3C003138.2' => 'cme', 'MELO3C005187.2' => 'cme', 'MELO3C009252.2' => 'cme', 'MELO3C014481.2' => 'cme', 'MELO3C020616.2' => 'cme', 'MELO3C020617.2' => 'cme', 'MELO3C020618.2' => 'cme', 'Migut.G00328' => 'egut', 'Migut.J00320' => 'egut', 'Migut.L01000' => 'egut', 'Migut.L01953' => 'egut', 'MSTRG.10253' => 'ama', 'MSTRG.19077' => 'ama', 'MSTRG.26780' => 'ama', 'MSTRG.4023' => 'ama', 'MSTRG.5655' => 'ama', 'MSTRG.9992' => 'ama', 'Nitab4.5_0000043g0310' => 'nta', 'Nitab4.5_0000463g0080' => 'nta', 'Nitab4.5_0000705g0170' => 'nta', 'Nitab4.5_0001326g0060' => 'nta', 'Nitab4.5_0001628g0030' => 'nta', 'Nitab4.5_0002103g0110' => 'nta', 'Nitab4.5_0002946g0030' => 'nta', 'Nitab4.5_0004639g0030' => 'nta', 'Nn2g11149' => 'nnu', 'Nn2g13389' => 'nnu', 'Nn4g25326' => 'nnu', 'Nn4g26290' => 'nnu', 'Nn5g29865' => 'nnu', 'Oeu004163.1' => 'oeu', 'Oeu006901.1' => 'oeu', 'Oeu010096.1' => 'oeu', 'Oeu024340.1' => 'oeu', 'Oeu048369.1' => 'oeu', 'Os01g0973000' => 'osa', 'Os03g0273800' => 'osa', 'Os03g0701200' => 'osa', 'Os03g0834050' => 'osa', 'Os07g0634400' => 'osa', 'Peaxi162Scf00092g01414' => 'pax', 'Peaxi162Scf00165g00818' => 'pax', 'Peaxi162Scf00309g00516' => 'pax', 'Peaxi162Scf00774g00218' => 'pax', 'PGR004G1824' => 'pgr', 'PGR004G2606' => 'pgr', 'PGR031G2716' => 'pgr', 'PGR102G2460' => 'pgr', 'PGR142G2599' => 'pgr', 'PGSC0003DMG400000843' => 'stu', 'PGSC0003DMG400008829' => 'stu', 'PGSC0003DMG400030418' => 'stu', 'PGSC0003DMG400031834' => 'stu', 'PGSC0003DMG401028300' => 'stu', 'PGSC0003DMG402028300' => 'stu', 'Phvul.001G219300' => 'pvu', 'Phvul.007G056000' => 'pvu', 'Phvul.007G208000' => 'pvu', 'Phvul.008G119500' => 'pvu', 'Phvul.010G011200' => 'pvu', 'Phvul.010G014800' => 'pvu', 'Phvul.011G062900' => 'pvu', 'Phvul.L007043' => 'pvu', 'Potri.001G242300' => 'ptr', 'Potri.002G185300' => 'ptr', 'Potri.006G086900' => 'ptr', 'Potri.008G151700' => 'ptr', 'Potri.009G033500' => 'ptr', 'Potri.010G089300' => 'ptr', 'Potri.014G110800' => 'ptr', 'Pp3c27_8130' => 'ppa', 'Pp3c6_27410' => 'ppa', 'PRCOL_00001659' => 'pco', 'PRCOL_00001927' => 'pco', 'PRCOL_00003649' => 'pco', 'Prupe.1G011600' => 'ppe', 'Prupe.3G000800' => 'ppe', 'Prupe.3G001100' => 'ppe', 'Prupe.6G072700' => 'ppe', 'Prupe.6G072800' => 'ppe', 'Prupe.6G257300' => 'ppe', 'Prupe.8G033000' => 'ppe', 'Psat0s2633g0080' => 'psa', 'Psat0s3396g0080' => 'psa', 'Psat0s3396g0200' => 'psa', 'Psat3g139080' => 'psa', 'Psat5g285080' => 'psa', 'Psat6g157760' => 'psa', 'Psat6g208440' => 'psa', 'Psat7g215320' => 'psa', 'Psat7g215400' => 'psa', 'Psat7g235600' => 'psa', 'Psat7g235760' => 'psa', 'PSO063G4603' => 'pso', 'PSO210G0182' => 'pso', 'PSO210G0196' => 'pso', 'PSO339G0394' => 'pso', 'PSO339G4127' => 'pso', 'PSO513G0064' => 'pso', 'PSO761G0079' => 'pso', 'QL01p031003' => 'qlo', 'QL01p031078' => 'qlo', 'QL06p003004' => 'qlo', 'QL07p048731' => 'qlo', 'QL09p037427' => 'qlo', 'RcHm_v2.0_Chr3g0466361' => 'rch', 'RcHm_v2.0_Chr3g0485571' => 'rch', 'RcHm_v2.0_Chr4g0416551' => 'rch', 'RcHm_v2.0_Chr5g0065831' => 'rch', 'Rhsim01G0230500' => 'rsi', 'Rhsim05G0194000' => 'rsi', 'Rhsim08G0250400' => 'rsi', 'Sabra02G0131000' => 'sbr', 'Sabra06G0066300' => 'sbr', 'Sabra08G0115500' => 'sbr', 'Sabra09G0023900' => 'sbr', 'Sabra10G0054000' => 'sbr', 'Sabra14G0081500' => 'sbr', 'Sabra16G0147100' => 'sbr', 'SalBow2G2957' => 'sbo', 'SalBow4G3320' => 'sbo', 'SalBow8G1894' => 'sbo', 'Sc07g0007950' => 'sci', 'Sc12g0001360' => 'sci', 'Sc13g0004330' => 'sci', 'Sc20g0005010' => 'sci', 'Sed0000361' => 'sed', 'Sed0001706' => 'sed', 'Sed0002422' => 'sed', 'Sed0004029' => 'sed', 'Sed0004602' => 'sed', 'Sed0004943' => 'sed', 'Sed0008646' => 'sed', 'Sed0023313' => 'sed', 'Sed0024843' => 'sed', 'SEGI_00081' => 'sgi', 'SEGI_00947' => 'sgi', 'SEGI_04046' => 'sgi', 'SEGI_06880' => 'sgi', 'SEGI_09736' => 'sgi', 'SEGI_12741' => 'sgi', 'SEGI_14530' => 'sgi', 'SEGI_20705' => 'sgi', 'SEGI_26088' => 'sgi', 'SEGI_28323' => 'sgi', 'SEGI_33343' => 'sgi', 'SGA_v2.0_scaffold126G33775' => 'sas', 'SGA_v2.0_scaffold2G01337' => 'sas', 'SGA_v2.0_scaffold38G15006' => 'sas', 'SGA_v2.0_scaffold39G15264' => 'sas', 'SGA_v2.0_scaffold453G51880' => 'sas', 'SHI12696' => 'shi', 'SMO367G1096' => 'smo', 'Solyc01g068630.3' => 'sly', 'Solyc05g011880.3' => 'sly', 'Solyc06g076300.3' => 'sly', 'Solyc09g010940.4' => 'sly', 'Solyc09g075890.3' => 'sly', 'Sopen01g030560' => 'spe', 'Sopen05g006630' => 'spe', 'Sopen06g032720' => 'spe', 'Sopen09g005660' => 'spe', 'Sopen09g030690' => 'spe', 'Sp4g14540' => 'spa', 'Sp4g20030' => 'spa', 'Sp5g01320' => 'spa', 'Sp6g21170' => 'spa', 'Sp6g21180' => 'spa', 'Sp6g21190' => 'spa', 'Sp6g40220' => 'spa', 'TAR362G0122' => 'tar', 'TAR362G1338' => 'tar', 'TAR369G0590' => 'tar', 'TAR371G0824' => 'tar', 'TAR622G1429' => 'tar', 'TAR623G0734' => 'tar', 'TAR625G0441' => 'tar', 'TAR629G0976' => 'tar', 'TAR633G1195' => 'tar', 'TAR636G2660' => 'tar', 'THA.LOC104799440' => 'tha', 'THA.LOC104800966' => 'tha', 'THA.LOC104806559' => 'tha', 'THA.LOC104810765' => 'tha', 'THA.LOC104816266' => 'tha', 'THA.LOC104817419' => 'tha', 'THA.LOC104827021' => 'tha', 'Thecc.01G327400' => 'tca', 'Thecc.04G229200' => 'tca', 'Thecc.05G037400' => 'tca', 'Thecc.09G318600' => 'tca', 'Thecc.09G318700' => 'tca', 'Thhalv10006238m.g' => 'esa', 'Thhalv10014321m.g' => 'esa', 'Thhalv10014335m.g' => 'esa', 'Thhalv10015826m.g' => 'esa', 'Thhalv10017107m.g' => 'esa', 'Thhalv10017180m.g' => 'esa', 'Thhalv10029339m.g' => 'esa', 'TPR.G1699' => 'tpr', 'TPR.G23609' => 'tpr', 'TPR.G3081' => 'tpr', 'TPR.G40397' => 'tpr', 'TPR.G5522' => 'tpr', 'TPR.G5618' => 'tpr', 'TPR.G5626' => 'tpr', 'TWI09G1632' => 'twi', 'TWI23G1230' => 'twi', 'TWI53G1064' => 'twi', 'TWI59G0751' => 'twi', 'TWI74G0947' => 'twi', 'TWI77G0337' => 'twi', 'TWI79G1254' => 'twi', 'unitig_0.g2341' => 'ugi', 'unitig_26.g10006' => 'ugi', 'unitig_26.g10008' => 'ugi', 'unitig_26.g9192' => 'ugi', 'vmacro14547' => 'vma', 'vmacro15333' => 'vma', 'vmacro18743' => 'vma', 'vmacro20166' => 'vma', 'VMungo0331G0523' => 'vmu', 'VMungo0331G1202' => 'vmu', 'VMungo0720G1228' => 'vmu', 'VMungo0720G1514' => 'vmu', 'VMungo1080G0169' => 'vmu', 'VMungo1127G1475' => 'vmu', 'VMungo1383G1208' => 'vmu', 'VMungo1383G1698' => 'vmu', 'Zm00001eb012270' => 'zma', 'Zm00001eb054100' => 'zma', 'Zm00001eb063350' => 'zma', 'Zm00001eb328560' => 'zma', 'Zm00001eb342820' => 'zma', 'Zm00001eb362210' => 'zma', 'Zm00001eb397730' => 'zma', 'Zm00001eb399750' => 'zma' ) $gf_id = 'HOM05D000959' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000959' ) $data_identifier = 'HOM05D000959' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 5, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 5, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 10, 'mbi' => (int) 3, 'mco' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 2, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 3, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 11, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399750' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000959', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '622', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p07100' => 'bna', 'A03p11720' => 'bna', 'A05p08300' => 'bna', 'A05p13380' => 'bna', 'A09p54130' => 'bna', 'A10p16690' => 'bna', 'A10p16700' => 'bna', 'A10p33390' => 'bna', 'Aa31LG10G16020' => 'aar', 'Aa31LG1G11810' => 'aar', 'Aa31LG1G11830' => 'aar', 'Aa31LG1G22510' => 'aar', 'Aa31LG5G4890' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5793' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2310' => 'aag', 'Actinidia08499' => 'ach', 'Actinidia11262' => 'ach', 'Actinidia23926' => 'ach', 'Actinidia34420' => 'ach', 'Actinidia36970' => 'ach', 'Ah.02g111220' => 'amhyb', 'Ah.15g097750' => 'amhyb', 'AL4G27500' => 'aly', 'AL6G11470' => 'aly', 'AL8G35950' => 'aly', 'AL8G35960' => 'aly', 'AL8G35970' => 'aly', 'Aqoxy1G00912' => 'aox', 'Aqoxy2G02253' => 'aox', 'Aqoxy2G02411' => 'aox', 'Aqoxy5G00485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BZ66YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K8ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM4FUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6BF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HFV7XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25JBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0YNNV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MAKK6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P70IT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP2Z6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V61LZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YWP64R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3S9AI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7PGHH' => 'arhy', 'AT2G32150' => 'ath', 'AT3G62040' => 'ath', 'AT5G02230' => 'ath', 'AT5G59480' => 'ath', 'AT5G59490' => 'ath', 'ATR0332G060' => 'atr', 'ATR0559G190' => 'atr', 'ATR0693G294' => 'atr', 'Atru.chr3.3975' => 'acertr', 'Atru.chr3.3976' => 'acertr', 'Atru.chr3.3977' => 'acertr', 'Atru.chr4.2498' => 'acertr', 'Atru.chr5.838' => 'acertr', 'Atru.chr8.1990' => 'acertr', 'Atru.chr8.1991' => 'acertr', 'Atru.chr8.1992' => 'acertr', 'AUR62001759' => 'cqu', 'AUR62009545' => 'cqu', 'AUR62010474' => 'cqu', 'AUR62025820' => 'cqu', 'AUR62030422' => 'cqu', 'AUR62033605' => 'cqu', 'AUR62038615' => 'cqu', 'AUR62041347' => 'cqu', 'BcaB01g04574' => 'bca', 'BcaB02g09263' => 'bca', 'BcaB02g10453' => 'bca', 'BcaB05g22513' => 'bca', 'BcaB08g36253' => 'bca', 'BcaB08g36254' => 'bca', 'BcaC01g06519' => 'bca', 'BcaC02g11889' => 'bca', 'BcaC03g14010' => 'bca', 'BcaC03g18439' => 'bca', 'BcaC04g19765' => 'bca', 'BcaC09g48432' => 'bca', 'BcaNung07302' => 'bca', 'BolC2t06040H' => 'bol', 'BolC2t07346H' => 'bol', 'BolC3t13817H' => 'bol', 'BolC4t22625H' => 'bol', 'BolC4t23297H' => 'bol', 'BolC8t51278H' => 'bol', 'BolC9t58050H' => 'bol', 'BolC9t58051H' => 'bol', 'BolC9t60163H' => 'bol', 'BraA02t04712Z' => 'bra', 'BraA02t05791Z' => 'bra', 'BraA03t10483Z' => 'bra', 'BraA05t19795Z' => 'bra', 'BraA05t20276Z' => 'bra', 'BraA09t40827Z' => 'bra', 'BraA10t43750Z' => 'bra', 'BraA10t43751Z' => 'bra', 'BraA10t45370Z' => 'bra', 'C02p00400' => 'bna', 'C02p12460' => 'bna', 'C03p13680' => 'bna', 'C04p10270' => 'bna', 'C04p17500' => 'bna', 'C08p37010' => 'bna', 'C09p51880' => 'bna', 'C09p51890' => 'bna', 'C09p74300' => 'bna', 'CAN.G179.26' => 'can', 'CAN.G3384.1' => 'can', 'CAN.G394.68' => 'can', 'CAN.G907.13' => 'can', 'CANSAT11G0012' => 'cansat', 'CANSAT25G1586' => 'cansat', 'CANSAT35G0735' => 'cansat', 'CANSAT54G0556' => 'cansat', 'CANSAT64G0356' => 'cansat', 'CANSAT78G2042' => 'cansat', 'CARHR125920' => 'chi', 'CARHR131910' => 'chi', 'CARHR172390' => 'chi', 'CARHR211140' => 'chi', 'CARHR285850' => 'chi', 'CARHR285860' => 'chi', 'Carub.0004s1347' => 'cru', 'Carub.0004s1960' => 'cru', 'Carub.0005s2880' => 'cru', 'Carub.0006s0107' => 'cru', 'Carub.0008s2015' => 'cru', 'Carub.0008s2016' => 'cru', 'Carub.0008s2017' => 'cru', 'Ca_01315_v3' => 'car', 'Ca_05063_v3' => 'car', 'Ca_10231_v3' => 'car', 'Ca_10913_v3' => 'car', 'Ca_19156_v3' => 'car', 'Ca_23644_v3' => 'car', 'Ca_26735_v3' => 'car', 'Cc01_g13130' => 'ccan', 'Cc02_g21690' => 'ccan', 'Cc03_g03600' => 'ccan', 'Cc06_g02510' => 'ccan', 'CDE02G1265' => 'cde', 'CDE05G0415' => 'cde', 'CDE08G1082' => 'cde', 'Cfa005780' => 'cfa', 'Cfa011522' => 'cfa', 'Cfa011523' => 'cfa', 'Cfa015627' => 'cfa', 'Cfa017359' => 'cfa', 'Ciclev10005687m.g' => 'ccl', 'Ciclev10012173m.g' => 'ccl', 'Ciclev10021621m.g' => 'ccl', 'Ciclev10028968m.g' => 'ccl', 'Ciclev10029907m.g' => 'ccl', 'CiPaw.01G164800' => 'cil', 'CiPaw.07G083700' => 'cil', 'CiPaw.07G127000' => 'cil', 'CiPaw.07G136900' => 'cil', 'CiPaw.08G081700' => 'cil', 'CiPaw.09G194600' => 'cil', 'CiPaw.10G146500' => 'cil', 'CiPaw.13G091500' => 'cil', 'CiPaw.13G091600' => 'cil', 'ClCG00G003390' => 'cla', 'ClCG01G007220' => 'cla', 'ClCG03G001370' => 'cla', 'ClCG04G008100' => 'cla', 'ClCG06G006110' => 'cla', 'ClCG06G006130' => 'cla', 'ClCG10G021210' => 'cla', 'COL.COLO4_07648' => 'col', 'COL.COLO4_07650' => 'col', 'COL.COLO4_07651' => 'col', 'COL.COLO4_14780' => 'col', 'COL.COLO4_18546' => 'col', 'COL.COLO4_18547' => 'col', 'COL.COLO4_23103' => 'col', 'COL.COLO4_30419' => 'col', 'COL.COLO4_34232' => 'col', 'Cpa.g.sc169.20' => 'cpa', 'Cpa.g.sc57.45' => 'cpa', 'Cpa.g.sc58.124' => 'cpa', 'Cpa.g.sc58.125' => 'cpa', 'Cpa.g.sc81.118' => 'cpa', 'Cpa.g.sc81.119' => 'cpa', 'Cre12.g524700' => 'cre', 'CsaV3_1G034430' => 'csa', 'CsaV3_1G034440' => 'csa', 'CsaV3_1G034450' => 'csa', 'CsaV3_3G034830' => 'csa', 'CsaV3_4G025090' => 'csa', 'CsaV3_5G018660' => 'csa', 'CsaV3_6G038160' => 'csa', 'CSS0003447' => 'camsi', 'CSS0017840' => 'camsi', 'CSS0019260' => 'camsi', 'CSS0040375' => 'camsi', 'CSS0042533' => 'camsi', 'DCAR_005960' => 'dca', 'DCAR_012104' => 'dca', 'DCAR_012105' => 'dca', 'DCAR_012293' => 'dca', 'DCAR_015632' => 'dca', 'DCAR_024602' => 'dca', 'DCAR_028752' => 'dca', 'Dinv06261' => 'din', 'Dinv13982' => 'din', 'Dinv17029' => 'din', 'Dinv18463' => 'din', 'Dinv33181' => 'din', 'Dinv35585' => 'din', 'Dinv37161' => 'din', 'Dinv42977' => 'din', 'Dinv43122' => 'din', 'Dinv44517' => 'din', 'Duzib093G0256' => 'dzi', 'Duzib106G1254' => 'dzi', 'Duzib128G1789' => 'dzi', 'Duzib133G0633' => 'dzi', 'Duzib138G0510' => 'dzi', 'Duzib150G1084' => 'dzi', 'Duzib168G0488' => 'dzi', 'Duzib168G1523' => 'dzi', 'Duzib170G0133' => 'dzi', 'ECA234G1433' => 'eca', 'ECA236G1432' => 'eca', 'ECA236G2256' => 'eca', 'ECA236G2365' => 'eca', 'ECA236G4830' => 'eca', 'ECA248G1505' => 'eca', 'EL10Ac3g06431' => 'bvu', 'EL10Ac5g12577' => 'bvu', 'EL10Ac6g13533' => 'bvu', 'EL10Ac7g16045' => 'bvu', 'Eucgr.A01281' => 'egr', 'Eucgr.B02326' => 'egr', 'Eucgr.H03532' => 'egr', 'Eucgr.K00553' => 'egr', 'Eucgr.K03116' => 'egr', 'FAN02G3963' => 'fan', 'FAN05G0438' => 'fan', 'FAN09G2434' => 'fan', 'FAN12G3984' => 'fan', 'FAN14G0798' => 'fan', 'FAN17G0652' => 'fan', 'FAN19G1988' => 'fan', 'FAN22G0632' => 'fan', 'FAN23G0387' => 'fan', 'FAN26G1323' => 'fan', 'FAN28G0666' => 'fan', 'FvH4_1g26080' => 'fve', 'FvH4_3g36780' => 'fve', 'FvH4_4g15270' => 'fve', 'FvH4_6g13490' => 'fve', 'Glyma.01G098700' => 'gma', 'Glyma.03G065900' => 'gma', 'Glyma.03G073754' => 'gma', 'Glyma.03G073758' => 'gma', 'Glyma.03G083200' => 'gma', 'Glyma.03G225500' => 'gma', 'Glyma.05G037766' => 'gma', 'Glyma.07G133500' => 'gma', 'Glyma.10G139400' => 'gma', 'Glyma.10G248900' => 'gma', 'Glyma.11G137800' => 'gma', 'Glyma.12G061300' => 'gma', 'Glyma.13G337900' => 'gma', 'Glyma.15G036600' => 'gma', 'Glyma.18G182800' => 'gma', 'Glyma.19G222500' => 'gma', 'Glyma.20G144800' => 'gma', 'Gohir.A01G222000' => 'ghi', 'Gohir.A03G044000' => 'ghi', 'Gohir.A03G044100' => 'ghi', 'Gohir.A04G083100' => 'ghi', 'Gohir.A07G127200' => 'ghi', 'Gohir.A07G132400' => 'ghi', 'Gohir.A08G000700' => 'ghi', 'Gohir.A11G327300' => 'ghi', 'Gohir.D01G211500' => 'ghi', 'Gohir.D03G123400' => 'ghi', 'Gohir.D03G123500' => 'ghi', 'Gohir.D04G121800' => 'ghi', 'Gohir.D07G131500' => 'ghi', 'Gohir.D07G136600' => 'ghi', 'Gohir.D08G011600' => 'ghi', 'Gohir.D11G346200' => 'ghi', 'Gorai.001G142800' => 'gra', 'Gorai.001G148700' => 'gra', 'Gorai.002G257300' => 'gra', 'Gorai.003G130000' => 'gra', 'Gorai.003G130100' => 'gra', 'Gorai.004G005300' => 'gra', 'Gorai.007G376500' => 'gra', 'Gorai.012G104700' => 'gra', 'GSVIVG01017946001' => 'vvi', 'GSVIVG01024928001' => 'vvi', 'GSVIVG01028227001' => 'vvi', 'GSVIVG01034151001' => 'vvi', 'HanXRQChr05g0135031' => 'han', 'HanXRQChr05g0135041' => 'han', 'HanXRQChr05g0140021' => 'han', 'HanXRQChr06g0178981' => 'han', 'HanXRQChr07g0188251' => 'han', 'HanXRQChr08g0235311' => 'han', 'HanXRQChr09g0271011' => 'han', 'HanXRQChr10g0293321' => 'han', 'HanXRQChr13g0388171' => 'han', 'Haze_00916' => 'cav', 'Haze_05063' => 'cav', 'Haze_20814' => 'cav', 'Haze_24128' => 'cav', 'Hma1.2p1_0745F.1_g212010' => 'hma', 'Hma1.2p1_0757F.1_g213260' => 'hma', 'Hma1.2p1_0936F.1_g238840' => 'hma', 'Hma1.2p1_1735F.1_g299890' => 'hma', 'Hma1.2p1_1861F.1_g305685' => 'hma', 'HPP92_003397' => 'vpl', 'HPP92_012597' => 'vpl', 'HPP92_015520' => 'vpl', 'HPP92_015539' => 'vpl', 'HPP92_020373' => 'vpl', 'Hund04938' => 'sun', 'Hund10677' => 'sun', 'Hund11033' => 'sun', 'Hund12155' => 'sun', 'Lalb_Chr01g0022551' => 'lal', 'Lalb_Chr03g0042341' => 'lal', 'Lalb_Chr07g0192931' => 'lal', 'Lalb_Chr12g0209551' => 'lal', 'Lalb_Chr19g0125251' => 'lal', 'Lalb_Chr19g0137891' => 'lal', 'Lalb_Chr21g0304641' => 'lal', 'Lalb_Chr21g0309881' => 'lal', 'Lj1A5T12' => 'lonja', 'Lj1C148G10' => 'lonja', 'Lj2A93T83' => 'lonja', 'Lj3A738G68' => 'lonja', 'Lj3C966T1' => 'lonja', 'Lj3g0018958' => 'lja', 'Lj3g0021831' => 'lja', 'Lj3g0025443' => 'lja', 'Lj4g0026809' => 'lja', 'Lj5g0012558' => 'lja', 'Lj5g0021586' => 'lja', 'Lsat_1_v5_gn_5_156840' => 'lsa', 'Lsat_1_v5_gn_8_73460' => 'lsa', 'Lsat_1_v5_gn_8_73481' => 'lsa', 'Lsat_1_v5_gn_9_31601' => 'lsa', 'Lsat_1_v5_gn_9_77320' => 'lsa', 'Manes.01G171300' => 'mes', 'Manes.01G171400' => 'mes', 'Manes.01G236100' => 'mes', 'Manes.02G130500' => 'mes', 'Manes.02G130600' => 'mes', 'Manes.03G180200' => 'mes', 'Manes.05G007000' => 'mes', 'Manes.08G084400' => 'mes', 'Manes.09G092600' => 'mes', 'Manes.15G027900' => 'mes', 'MBI04_g40948_MAGBIO' => 'mbi', 'MBI14_g12123_MAGBIO' => 'mbi', 'MBI18_g28915_MAGBIO' => 'mbi', 'MCO09G053' => 'mco', 'MCO11G782' => 'mco', 'MCO15G215' => 'mco', 'MD03G1088500' => 'mdo', 'MD03G1088600' => 'mdo', 'MD04G1130800' => 'mdo', 'MD09G1291700' => 'mdo', 'MD11G1097500' => 'mdo', 'MD11G1097600' => 'mdo', 'MD12G1143900' => 'mdo', 'MD13G1191400' => 'mdo', 'MD16G1191500' => 'mdo', 'Medtr1g085570' => 'mtr', 'Medtr1g104610' => 'mtr', 'Medtr2g097520' => 'mtr', 'Medtr4g021800' => 'mtr', 'Medtr4g021825' => 'mtr', 'Medtr4g064270' => 'mtr', 'Medtr4g064380' => 'mtr', 'Medtr7g062150' => 'mtr', 'MELO3C003138.2' => 'cme', 'MELO3C005187.2' => 'cme', 'MELO3C009252.2' => 'cme', 'MELO3C014481.2' => 'cme', 'MELO3C020616.2' => 'cme', 'MELO3C020617.2' => 'cme', 'MELO3C020618.2' => 'cme', 'Migut.G00328' => 'egut', 'Migut.J00320' => 'egut', 'Migut.L01000' => 'egut', 'Migut.L01953' => 'egut', 'MSTRG.10253' => 'ama', 'MSTRG.19077' => 'ama', 'MSTRG.26780' => 'ama', 'MSTRG.4023' => 'ama', 'MSTRG.5655' => 'ama', 'MSTRG.9992' => 'ama', 'Nitab4.5_0000043g0310' => 'nta', 'Nitab4.5_0000463g0080' => 'nta', 'Nitab4.5_0000705g0170' => 'nta', 'Nitab4.5_0001326g0060' => 'nta', 'Nitab4.5_0001628g0030' => 'nta', 'Nitab4.5_0002103g0110' => 'nta', 'Nitab4.5_0002946g0030' => 'nta', 'Nitab4.5_0004639g0030' => 'nta', 'Nn2g11149' => 'nnu', 'Nn2g13389' => 'nnu', 'Nn4g25326' => 'nnu', 'Nn4g26290' => 'nnu', 'Nn5g29865' => 'nnu', 'Oeu004163.1' => 'oeu', 'Oeu006901.1' => 'oeu', 'Oeu010096.1' => 'oeu', 'Oeu024340.1' => 'oeu', 'Oeu048369.1' => 'oeu', 'Os01g0973000' => 'osa', 'Os03g0273800' => 'osa', 'Os03g0701200' => 'osa', 'Os03g0834050' => 'osa', 'Os07g0634400' => 'osa', 'Peaxi162Scf00092g01414' => 'pax', 'Peaxi162Scf00165g00818' => 'pax', 'Peaxi162Scf00309g00516' => 'pax', 'Peaxi162Scf00774g00218' => 'pax', 'PGR004G1824' => 'pgr', 'PGR004G2606' => 'pgr', 'PGR031G2716' => 'pgr', 'PGR102G2460' => 'pgr', 'PGR142G2599' => 'pgr', 'PGSC0003DMG400000843' => 'stu', 'PGSC0003DMG400008829' => 'stu', 'PGSC0003DMG400030418' => 'stu', 'PGSC0003DMG400031834' => 'stu', 'PGSC0003DMG401028300' => 'stu', 'PGSC0003DMG402028300' => 'stu', 'Phvul.001G219300' => 'pvu', 'Phvul.007G056000' => 'pvu', 'Phvul.007G208000' => 'pvu', 'Phvul.008G119500' => 'pvu', 'Phvul.010G011200' => 'pvu', 'Phvul.010G014800' => 'pvu', 'Phvul.011G062900' => 'pvu', 'Phvul.L007043' => 'pvu', 'Potri.001G242300' => 'ptr', 'Potri.002G185300' => 'ptr', 'Potri.006G086900' => 'ptr', 'Potri.008G151700' => 'ptr', 'Potri.009G033500' => 'ptr', 'Potri.010G089300' => 'ptr', 'Potri.014G110800' => 'ptr', 'Pp3c27_8130' => 'ppa', 'Pp3c6_27410' => 'ppa', 'PRCOL_00001659' => 'pco', 'PRCOL_00001927' => 'pco', 'PRCOL_00003649' => 'pco', 'Prupe.1G011600' => 'ppe', 'Prupe.3G000800' => 'ppe', 'Prupe.3G001100' => 'ppe', 'Prupe.6G072700' => 'ppe', 'Prupe.6G072800' => 'ppe', 'Prupe.6G257300' => 'ppe', 'Prupe.8G033000' => 'ppe', 'Psat0s2633g0080' => 'psa', 'Psat0s3396g0080' => 'psa', 'Psat0s3396g0200' => 'psa', 'Psat3g139080' => 'psa', 'Psat5g285080' => 'psa', 'Psat6g157760' => 'psa', 'Psat6g208440' => 'psa', 'Psat7g215320' => 'psa', 'Psat7g215400' => 'psa', 'Psat7g235600' => 'psa', 'Psat7g235760' => 'psa', 'PSO063G4603' => 'pso', 'PSO210G0182' => 'pso', 'PSO210G0196' => 'pso', 'PSO339G0394' => 'pso', 'PSO339G4127' => 'pso', 'PSO513G0064' => 'pso', 'PSO761G0079' => 'pso', 'QL01p031003' => 'qlo', 'QL01p031078' => 'qlo', 'QL06p003004' => 'qlo', 'QL07p048731' => 'qlo', 'QL09p037427' => 'qlo', 'RcHm_v2.0_Chr3g0466361' => 'rch', 'RcHm_v2.0_Chr3g0485571' => 'rch', 'RcHm_v2.0_Chr4g0416551' => 'rch', 'RcHm_v2.0_Chr5g0065831' => 'rch', 'Rhsim01G0230500' => 'rsi', 'Rhsim05G0194000' => 'rsi', 'Rhsim08G0250400' => 'rsi', 'Sabra02G0131000' => 'sbr', 'Sabra06G0066300' => 'sbr', 'Sabra08G0115500' => 'sbr', 'Sabra09G0023900' => 'sbr', 'Sabra10G0054000' => 'sbr', 'Sabra14G0081500' => 'sbr', 'Sabra16G0147100' => 'sbr', 'SalBow2G2957' => 'sbo', 'SalBow4G3320' => 'sbo', 'SalBow8G1894' => 'sbo', 'Sc07g0007950' => 'sci', 'Sc12g0001360' => 'sci', 'Sc13g0004330' => 'sci', 'Sc20g0005010' => 'sci', 'Sed0000361' => 'sed', 'Sed0001706' => 'sed', 'Sed0002422' => 'sed', 'Sed0004029' => 'sed', 'Sed0004602' => 'sed', 'Sed0004943' => 'sed', 'Sed0008646' => 'sed', 'Sed0023313' => 'sed', 'Sed0024843' => 'sed', 'SEGI_00081' => 'sgi', 'SEGI_00947' => 'sgi', 'SEGI_04046' => 'sgi', 'SEGI_06880' => 'sgi', 'SEGI_09736' => 'sgi', 'SEGI_12741' => 'sgi', 'SEGI_14530' => 'sgi', 'SEGI_20705' => 'sgi', 'SEGI_26088' => 'sgi', 'SEGI_28323' => 'sgi', 'SEGI_33343' => 'sgi', 'SGA_v2.0_scaffold126G33775' => 'sas', 'SGA_v2.0_scaffold2G01337' => 'sas', 'SGA_v2.0_scaffold38G15006' => 'sas', 'SGA_v2.0_scaffold39G15264' => 'sas', 'SGA_v2.0_scaffold453G51880' => 'sas', 'SHI12696' => 'shi', 'SMO367G1096' => 'smo', 'Solyc01g068630.3' => 'sly', 'Solyc05g011880.3' => 'sly', 'Solyc06g076300.3' => 'sly', 'Solyc09g010940.4' => 'sly', 'Solyc09g075890.3' => 'sly', 'Sopen01g030560' => 'spe', 'Sopen05g006630' => 'spe', 'Sopen06g032720' => 'spe', 'Sopen09g005660' => 'spe', 'Sopen09g030690' => 'spe', 'Sp4g14540' => 'spa', 'Sp4g20030' => 'spa', 'Sp5g01320' => 'spa', 'Sp6g21170' => 'spa', 'Sp6g21180' => 'spa', 'Sp6g21190' => 'spa', 'Sp6g40220' => 'spa', 'TAR362G0122' => 'tar', 'TAR362G1338' => 'tar', 'TAR369G0590' => 'tar', 'TAR371G0824' => 'tar', 'TAR622G1429' => 'tar', 'TAR623G0734' => 'tar', 'TAR625G0441' => 'tar', 'TAR629G0976' => 'tar', 'TAR633G1195' => 'tar', 'TAR636G2660' => 'tar', 'THA.LOC104799440' => 'tha', 'THA.LOC104800966' => 'tha', 'THA.LOC104806559' => 'tha', 'THA.LOC104810765' => 'tha', 'THA.LOC104816266' => 'tha', 'THA.LOC104817419' => 'tha', 'THA.LOC104827021' => 'tha', 'Thecc.01G327400' => 'tca', 'Thecc.04G229200' => 'tca', 'Thecc.05G037400' => 'tca', 'Thecc.09G318600' => 'tca', 'Thecc.09G318700' => 'tca', 'Thhalv10006238m.g' => 'esa', 'Thhalv10014321m.g' => 'esa', 'Thhalv10014335m.g' => 'esa', 'Thhalv10015826m.g' => 'esa', 'Thhalv10017107m.g' => 'esa', 'Thhalv10017180m.g' => 'esa', 'Thhalv10029339m.g' => 'esa', 'TPR.G1699' => 'tpr', 'TPR.G23609' => 'tpr', 'TPR.G3081' => 'tpr', 'TPR.G40397' => 'tpr', 'TPR.G5522' => 'tpr', 'TPR.G5618' => 'tpr', 'TPR.G5626' => 'tpr', 'TWI09G1632' => 'twi', 'TWI23G1230' => 'twi', 'TWI53G1064' => 'twi', 'TWI59G0751' => 'twi', 'TWI74G0947' => 'twi', 'TWI77G0337' => 'twi', 'TWI79G1254' => 'twi', 'unitig_0.g2341' => 'ugi', 'unitig_26.g10006' => 'ugi', 'unitig_26.g10008' => 'ugi', 'unitig_26.g9192' => 'ugi', 'vmacro14547' => 'vma', 'vmacro15333' => 'vma', 'vmacro18743' => 'vma', 'vmacro20166' => 'vma', 'VMungo0331G0523' => 'vmu', 'VMungo0331G1202' => 'vmu', 'VMungo0720G1228' => 'vmu', 'VMungo0720G1514' => 'vmu', 'VMungo1080G0169' => 'vmu', 'VMungo1127G1475' => 'vmu', 'VMungo1383G1208' => 'vmu', 'VMungo1383G1698' => 'vmu', 'Zm00001eb012270' => 'zma', 'Zm00001eb054100' => 'zma', 'Zm00001eb063350' => 'zma', 'Zm00001eb328560' => 'zma', 'Zm00001eb342820' => 'zma', 'Zm00001eb362210' => 'zma', 'Zm00001eb397730' => 'zma', 'Zm00001eb399750' => 'zma' ), 'gf_id' => 'HOM05D000959', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000959' ), 'data_identifier' => 'HOM05D000959', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000959', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '622', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p07100' => 'bna', 'A03p11720' => 'bna', 'A05p08300' => 'bna', 'A05p13380' => 'bna', 'A09p54130' => 'bna', 'A10p16690' => 'bna', 'A10p16700' => 'bna', 'A10p33390' => 'bna', 'Aa31LG10G16020' => 'aar', 'Aa31LG1G11810' => 'aar', 'Aa31LG1G11830' => 'aar', 'Aa31LG1G22510' => 'aar', 'Aa31LG5G4890' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5793' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2310' => 'aag', 'Actinidia08499' => 'ach', 'Actinidia11262' => 'ach', 'Actinidia23926' => 'ach', 'Actinidia34420' => 'ach', 'Actinidia36970' => 'ach', 'Ah.02g111220' => 'amhyb', 'Ah.15g097750' => 'amhyb', 'AL4G27500' => 'aly', 'AL6G11470' => 'aly', 'AL8G35950' => 'aly', 'AL8G35960' => 'aly', 'AL8G35970' => 'aly', 'Aqoxy1G00912' => 'aox', 'Aqoxy2G02253' => 'aox', 'Aqoxy2G02411' => 'aox', 'Aqoxy5G00485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BZ66YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K8ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM4FUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6BF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HFV7XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25JBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0YNNV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MAKK6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P70IT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP2Z6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V61LZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YWP64R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3S9AI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7PGHH' => 'arhy', 'AT2G32150' => 'ath', 'AT3G62040' => 'ath', 'AT5G02230' => 'ath', 'AT5G59480' => 'ath', 'AT5G59490' => 'ath', 'ATR0332G060' => 'atr', 'ATR0559G190' => 'atr', 'ATR0693G294' => 'atr', 'Atru.chr3.3975' => 'acertr', 'Atru.chr3.3976' => 'acertr', 'Atru.chr3.3977' => 'acertr', 'Atru.chr4.2498' => 'acertr', 'Atru.chr5.838' => 'acertr', 'Atru.chr8.1990' => 'acertr', 'Atru.chr8.1991' => 'acertr', 'Atru.chr8.1992' => 'acertr', 'AUR62001759' => 'cqu', 'AUR62009545' => 'cqu', 'AUR62010474' => 'cqu', 'AUR62025820' => 'cqu', 'AUR62030422' => 'cqu', 'AUR62033605' => 'cqu', 'AUR62038615' => 'cqu', 'AUR62041347' => 'cqu', 'BcaB01g04574' => 'bca', 'BcaB02g09263' => 'bca', 'BcaB02g10453' => 'bca', 'BcaB05g22513' => 'bca', 'BcaB08g36253' => 'bca', 'BcaB08g36254' => 'bca', 'BcaC01g06519' => 'bca', 'BcaC02g11889' => 'bca', 'BcaC03g14010' => 'bca', 'BcaC03g18439' => 'bca', 'BcaC04g19765' => 'bca', 'BcaC09g48432' => 'bca', 'BcaNung07302' => 'bca', 'BolC2t06040H' => 'bol', 'BolC2t07346H' => 'bol', 'BolC3t13817H' => 'bol', 'BolC4t22625H' => 'bol', 'BolC4t23297H' => 'bol', 'BolC8t51278H' => 'bol', 'BolC9t58050H' => 'bol', 'BolC9t58051H' => 'bol', 'BolC9t60163H' => 'bol', 'BraA02t04712Z' => 'bra', 'BraA02t05791Z' => 'bra', 'BraA03t10483Z' => 'bra', 'BraA05t19795Z' => 'bra', 'BraA05t20276Z' => 'bra', 'BraA09t40827Z' => 'bra', 'BraA10t43750Z' => 'bra', 'BraA10t43751Z' => 'bra', 'BraA10t45370Z' => 'bra', 'C02p00400' => 'bna', 'C02p12460' => 'bna', 'C03p13680' => 'bna', 'C04p10270' => 'bna', 'C04p17500' => 'bna', 'C08p37010' => 'bna', 'C09p51880' => 'bna', 'C09p51890' => 'bna', 'C09p74300' => 'bna', 'CAN.G179.26' => 'can', 'CAN.G3384.1' => 'can', 'CAN.G394.68' => 'can', 'CAN.G907.13' => 'can', 'CANSAT11G0012' => 'cansat', 'CANSAT25G1586' => 'cansat', 'CANSAT35G0735' => 'cansat', 'CANSAT54G0556' => 'cansat', 'CANSAT64G0356' => 'cansat', 'CANSAT78G2042' => 'cansat', 'CARHR125920' => 'chi', 'CARHR131910' => 'chi', 'CARHR172390' => 'chi', 'CARHR211140' => 'chi', 'CARHR285850' => 'chi', 'CARHR285860' => 'chi', 'Carub.0004s1347' => 'cru', 'Carub.0004s1960' => 'cru', 'Carub.0005s2880' => 'cru', 'Carub.0006s0107' => 'cru', 'Carub.0008s2015' => 'cru', 'Carub.0008s2016' => 'cru', 'Carub.0008s2017' => 'cru', 'Ca_01315_v3' => 'car', 'Ca_05063_v3' => 'car', 'Ca_10231_v3' => 'car', 'Ca_10913_v3' => 'car', 'Ca_19156_v3' => 'car', 'Ca_23644_v3' => 'car', 'Ca_26735_v3' => 'car', 'Cc01_g13130' => 'ccan', 'Cc02_g21690' => 'ccan', 'Cc03_g03600' => 'ccan', 'Cc06_g02510' => 'ccan', 'CDE02G1265' => 'cde', 'CDE05G0415' => 'cde', 'CDE08G1082' => 'cde', 'Cfa005780' => 'cfa', 'Cfa011522' => 'cfa', 'Cfa011523' => 'cfa', 'Cfa015627' => 'cfa', 'Cfa017359' => 'cfa', 'Ciclev10005687m.g' => 'ccl', 'Ciclev10012173m.g' => 'ccl', 'Ciclev10021621m.g' => 'ccl', 'Ciclev10028968m.g' => 'ccl', 'Ciclev10029907m.g' => 'ccl', 'CiPaw.01G164800' => 'cil', 'CiPaw.07G083700' => 'cil', 'CiPaw.07G127000' => 'cil', 'CiPaw.07G136900' => 'cil', 'CiPaw.08G081700' => 'cil', 'CiPaw.09G194600' => 'cil', 'CiPaw.10G146500' => 'cil', 'CiPaw.13G091500' => 'cil', 'CiPaw.13G091600' => 'cil', 'ClCG00G003390' => 'cla', 'ClCG01G007220' => 'cla', 'ClCG03G001370' => 'cla', 'ClCG04G008100' => 'cla', 'ClCG06G006110' => 'cla', 'ClCG06G006130' => 'cla', 'ClCG10G021210' => 'cla', 'COL.COLO4_07648' => 'col', 'COL.COLO4_07650' => 'col', 'COL.COLO4_07651' => 'col', 'COL.COLO4_14780' => 'col', 'COL.COLO4_18546' => 'col', 'COL.COLO4_18547' => 'col', 'COL.COLO4_23103' => 'col', 'COL.COLO4_30419' => 'col', 'COL.COLO4_34232' => 'col', 'Cpa.g.sc169.20' => 'cpa', 'Cpa.g.sc57.45' => 'cpa', 'Cpa.g.sc58.124' => 'cpa', 'Cpa.g.sc58.125' => 'cpa', 'Cpa.g.sc81.118' => 'cpa', 'Cpa.g.sc81.119' => 'cpa', 'Cre12.g524700' => 'cre', 'CsaV3_1G034430' => 'csa', 'CsaV3_1G034440' => 'csa', 'CsaV3_1G034450' => 'csa', 'CsaV3_3G034830' => 'csa', 'CsaV3_4G025090' => 'csa', 'CsaV3_5G018660' => 'csa', 'CsaV3_6G038160' => 'csa', 'CSS0003447' => 'camsi', 'CSS0017840' => 'camsi', 'CSS0019260' => 'camsi', 'CSS0040375' => 'camsi', 'CSS0042533' => 'camsi', 'DCAR_005960' => 'dca', 'DCAR_012104' => 'dca', 'DCAR_012105' => 'dca', 'DCAR_012293' => 'dca', 'DCAR_015632' => 'dca', 'DCAR_024602' => 'dca', 'DCAR_028752' => 'dca', 'Dinv06261' => 'din', 'Dinv13982' => 'din', 'Dinv17029' => 'din', 'Dinv18463' => 'din', 'Dinv33181' => 'din', 'Dinv35585' => 'din', 'Dinv37161' => 'din', 'Dinv42977' => 'din', 'Dinv43122' => 'din', 'Dinv44517' => 'din', 'Duzib093G0256' => 'dzi', 'Duzib106G1254' => 'dzi', 'Duzib128G1789' => 'dzi', 'Duzib133G0633' => 'dzi', 'Duzib138G0510' => 'dzi', 'Duzib150G1084' => 'dzi', 'Duzib168G0488' => 'dzi', 'Duzib168G1523' => 'dzi', 'Duzib170G0133' => 'dzi', 'ECA234G1433' => 'eca', 'ECA236G1432' => 'eca', 'ECA236G2256' => 'eca', 'ECA236G2365' => 'eca', 'ECA236G4830' => 'eca', 'ECA248G1505' => 'eca', 'EL10Ac3g06431' => 'bvu', 'EL10Ac5g12577' => 'bvu', 'EL10Ac6g13533' => 'bvu', 'EL10Ac7g16045' => 'bvu', 'Eucgr.A01281' => 'egr', 'Eucgr.B02326' => 'egr', 'Eucgr.H03532' => 'egr', 'Eucgr.K00553' => 'egr', 'Eucgr.K03116' => 'egr', 'FAN02G3963' => 'fan', 'FAN05G0438' => 'fan', 'FAN09G2434' => 'fan', 'FAN12G3984' => 'fan', 'FAN14G0798' => 'fan', 'FAN17G0652' => 'fan', 'FAN19G1988' => 'fan', 'FAN22G0632' => 'fan', 'FAN23G0387' => 'fan', 'FAN26G1323' => 'fan', 'FAN28G0666' => 'fan', 'FvH4_1g26080' => 'fve', 'FvH4_3g36780' => 'fve', 'FvH4_4g15270' => 'fve', 'FvH4_6g13490' => 'fve', 'Glyma.01G098700' => 'gma', 'Glyma.03G065900' => 'gma', 'Glyma.03G073754' => 'gma', 'Glyma.03G073758' => 'gma', 'Glyma.03G083200' => 'gma', 'Glyma.03G225500' => 'gma', 'Glyma.05G037766' => 'gma', 'Glyma.07G133500' => 'gma', 'Glyma.10G139400' => 'gma', 'Glyma.10G248900' => 'gma', 'Glyma.11G137800' => 'gma', 'Glyma.12G061300' => 'gma', 'Glyma.13G337900' => 'gma', 'Glyma.15G036600' => 'gma', 'Glyma.18G182800' => 'gma', 'Glyma.19G222500' => 'gma', 'Glyma.20G144800' => 'gma', 'Gohir.A01G222000' => 'ghi', 'Gohir.A03G044000' => 'ghi', 'Gohir.A03G044100' => 'ghi', 'Gohir.A04G083100' => 'ghi', 'Gohir.A07G127200' => 'ghi', 'Gohir.A07G132400' => 'ghi', 'Gohir.A08G000700' => 'ghi', 'Gohir.A11G327300' => 'ghi', 'Gohir.D01G211500' => 'ghi', 'Gohir.D03G123400' => 'ghi', 'Gohir.D03G123500' => 'ghi', 'Gohir.D04G121800' => 'ghi', 'Gohir.D07G131500' => 'ghi', 'Gohir.D07G136600' => 'ghi', 'Gohir.D08G011600' => 'ghi', 'Gohir.D11G346200' => 'ghi', 'Gorai.001G142800' => 'gra', 'Gorai.001G148700' => 'gra', 'Gorai.002G257300' => 'gra', 'Gorai.003G130000' => 'gra', 'Gorai.003G130100' => 'gra', 'Gorai.004G005300' => 'gra', 'Gorai.007G376500' => 'gra', 'Gorai.012G104700' => 'gra', 'GSVIVG01017946001' => 'vvi', 'GSVIVG01024928001' => 'vvi', 'GSVIVG01028227001' => 'vvi', 'GSVIVG01034151001' => 'vvi', 'HanXRQChr05g0135031' => 'han', 'HanXRQChr05g0135041' => 'han', 'HanXRQChr05g0140021' => 'han', 'HanXRQChr06g0178981' => 'han', 'HanXRQChr07g0188251' => 'han', 'HanXRQChr08g0235311' => 'han', 'HanXRQChr09g0271011' => 'han', 'HanXRQChr10g0293321' => 'han', 'HanXRQChr13g0388171' => 'han', 'Haze_00916' => 'cav', 'Haze_05063' => 'cav', 'Haze_20814' => 'cav', 'Haze_24128' => 'cav', 'Hma1.2p1_0745F.1_g212010' => 'hma', 'Hma1.2p1_0757F.1_g213260' => 'hma', 'Hma1.2p1_0936F.1_g238840' => 'hma', 'Hma1.2p1_1735F.1_g299890' => 'hma', 'Hma1.2p1_1861F.1_g305685' => 'hma', 'HPP92_003397' => 'vpl', 'HPP92_012597' => 'vpl', 'HPP92_015520' => 'vpl', 'HPP92_015539' => 'vpl', 'HPP92_020373' => 'vpl', 'Hund04938' => 'sun', 'Hund10677' => 'sun', 'Hund11033' => 'sun', 'Hund12155' => 'sun', 'Lalb_Chr01g0022551' => 'lal', 'Lalb_Chr03g0042341' => 'lal', 'Lalb_Chr07g0192931' => 'lal', 'Lalb_Chr12g0209551' => 'lal', 'Lalb_Chr19g0125251' => 'lal', 'Lalb_Chr19g0137891' => 'lal', 'Lalb_Chr21g0304641' => 'lal', 'Lalb_Chr21g0309881' => 'lal', 'Lj1A5T12' => 'lonja', 'Lj1C148G10' => 'lonja', 'Lj2A93T83' => 'lonja', 'Lj3A738G68' => 'lonja', 'Lj3C966T1' => 'lonja', 'Lj3g0018958' => 'lja', 'Lj3g0021831' => 'lja', 'Lj3g0025443' => 'lja', 'Lj4g0026809' => 'lja', 'Lj5g0012558' => 'lja', 'Lj5g0021586' => 'lja', 'Lsat_1_v5_gn_5_156840' => 'lsa', 'Lsat_1_v5_gn_8_73460' => 'lsa', 'Lsat_1_v5_gn_8_73481' => 'lsa', 'Lsat_1_v5_gn_9_31601' => 'lsa', 'Lsat_1_v5_gn_9_77320' => 'lsa', 'Manes.01G171300' => 'mes', 'Manes.01G171400' => 'mes', 'Manes.01G236100' => 'mes', 'Manes.02G130500' => 'mes', 'Manes.02G130600' => 'mes', 'Manes.03G180200' => 'mes', 'Manes.05G007000' => 'mes', 'Manes.08G084400' => 'mes', 'Manes.09G092600' => 'mes', 'Manes.15G027900' => 'mes', 'MBI04_g40948_MAGBIO' => 'mbi', 'MBI14_g12123_MAGBIO' => 'mbi', 'MBI18_g28915_MAGBIO' => 'mbi', 'MCO09G053' => 'mco', 'MCO11G782' => 'mco', 'MCO15G215' => 'mco', 'MD03G1088500' => 'mdo', 'MD03G1088600' => 'mdo', 'MD04G1130800' => 'mdo', 'MD09G1291700' => 'mdo', 'MD11G1097500' => 'mdo', 'MD11G1097600' => 'mdo', 'MD12G1143900' => 'mdo', 'MD13G1191400' => 'mdo', 'MD16G1191500' => 'mdo', 'Medtr1g085570' => 'mtr', 'Medtr1g104610' => 'mtr', 'Medtr2g097520' => 'mtr', 'Medtr4g021800' => 'mtr', 'Medtr4g021825' => 'mtr', 'Medtr4g064270' => 'mtr', 'Medtr4g064380' => 'mtr', 'Medtr7g062150' => 'mtr', 'MELO3C003138.2' => 'cme', 'MELO3C005187.2' => 'cme', 'MELO3C009252.2' => 'cme', 'MELO3C014481.2' => 'cme', 'MELO3C020616.2' => 'cme', 'MELO3C020617.2' => 'cme', 'MELO3C020618.2' => 'cme', 'Migut.G00328' => 'egut', 'Migut.J00320' => 'egut', 'Migut.L01000' => 'egut', 'Migut.L01953' => 'egut', 'MSTRG.10253' => 'ama', 'MSTRG.19077' => 'ama', 'MSTRG.26780' => 'ama', 'MSTRG.4023' => 'ama', 'MSTRG.5655' => 'ama', 'MSTRG.9992' => 'ama', 'Nitab4.5_0000043g0310' => 'nta', 'Nitab4.5_0000463g0080' => 'nta', 'Nitab4.5_0000705g0170' => 'nta', 'Nitab4.5_0001326g0060' => 'nta', 'Nitab4.5_0001628g0030' => 'nta', 'Nitab4.5_0002103g0110' => 'nta', 'Nitab4.5_0002946g0030' => 'nta', 'Nitab4.5_0004639g0030' => 'nta', 'Nn2g11149' => 'nnu', 'Nn2g13389' => 'nnu', 'Nn4g25326' => 'nnu', 'Nn4g26290' => 'nnu', 'Nn5g29865' => 'nnu', 'Oeu004163.1' => 'oeu', 'Oeu006901.1' => 'oeu', 'Oeu010096.1' => 'oeu', 'Oeu024340.1' => 'oeu', 'Oeu048369.1' => 'oeu', 'Os01g0973000' => 'osa', 'Os03g0273800' => 'osa', 'Os03g0701200' => 'osa', 'Os03g0834050' => 'osa', 'Os07g0634400' => 'osa', 'Peaxi162Scf00092g01414' => 'pax', 'Peaxi162Scf00165g00818' => 'pax', 'Peaxi162Scf00309g00516' => 'pax', 'Peaxi162Scf00774g00218' => 'pax', 'PGR004G1824' => 'pgr', 'PGR004G2606' => 'pgr', 'PGR031G2716' => 'pgr', 'PGR102G2460' => 'pgr', 'PGR142G2599' => 'pgr', 'PGSC0003DMG400000843' => 'stu', 'PGSC0003DMG400008829' => 'stu', 'PGSC0003DMG400030418' => 'stu', 'PGSC0003DMG400031834' => 'stu', 'PGSC0003DMG401028300' => 'stu', 'PGSC0003DMG402028300' => 'stu', 'Phvul.001G219300' => 'pvu', 'Phvul.007G056000' => 'pvu', 'Phvul.007G208000' => 'pvu', 'Phvul.008G119500' => 'pvu', 'Phvul.010G011200' => 'pvu', 'Phvul.010G014800' => 'pvu', 'Phvul.011G062900' => 'pvu', 'Phvul.L007043' => 'pvu', 'Potri.001G242300' => 'ptr', 'Potri.002G185300' => 'ptr', 'Potri.006G086900' => 'ptr', 'Potri.008G151700' => 'ptr', 'Potri.009G033500' => 'ptr', 'Potri.010G089300' => 'ptr', 'Potri.014G110800' => 'ptr', 'Pp3c27_8130' => 'ppa', 'Pp3c6_27410' => 'ppa', 'PRCOL_00001659' => 'pco', 'PRCOL_00001927' => 'pco', 'PRCOL_00003649' => 'pco', 'Prupe.1G011600' => 'ppe', 'Prupe.3G000800' => 'ppe', 'Prupe.3G001100' => 'ppe', 'Prupe.6G072700' => 'ppe', 'Prupe.6G072800' => 'ppe', 'Prupe.6G257300' => 'ppe', 'Prupe.8G033000' => 'ppe', 'Psat0s2633g0080' => 'psa', 'Psat0s3396g0080' => 'psa', 'Psat0s3396g0200' => 'psa', 'Psat3g139080' => 'psa', 'Psat5g285080' => 'psa', 'Psat6g157760' => 'psa', 'Psat6g208440' => 'psa', 'Psat7g215320' => 'psa', 'Psat7g215400' => 'psa', 'Psat7g235600' => 'psa', 'Psat7g235760' => 'psa', 'PSO063G4603' => 'pso', 'PSO210G0182' => 'pso', 'PSO210G0196' => 'pso', 'PSO339G0394' => 'pso', 'PSO339G4127' => 'pso', 'PSO513G0064' => 'pso', 'PSO761G0079' => 'pso', 'QL01p031003' => 'qlo', 'QL01p031078' => 'qlo', 'QL06p003004' => 'qlo', 'QL07p048731' => 'qlo', 'QL09p037427' => 'qlo', 'RcHm_v2.0_Chr3g0466361' => 'rch', 'RcHm_v2.0_Chr3g0485571' => 'rch', 'RcHm_v2.0_Chr4g0416551' => 'rch', 'RcHm_v2.0_Chr5g0065831' => 'rch', 'Rhsim01G0230500' => 'rsi', 'Rhsim05G0194000' => 'rsi', 'Rhsim08G0250400' => 'rsi', 'Sabra02G0131000' => 'sbr', 'Sabra06G0066300' => 'sbr', 'Sabra08G0115500' => 'sbr', 'Sabra09G0023900' => 'sbr', 'Sabra10G0054000' => 'sbr', 'Sabra14G0081500' => 'sbr', 'Sabra16G0147100' => 'sbr', 'SalBow2G2957' => 'sbo', 'SalBow4G3320' => 'sbo', 'SalBow8G1894' => 'sbo', 'Sc07g0007950' => 'sci', 'Sc12g0001360' => 'sci', 'Sc13g0004330' => 'sci', 'Sc20g0005010' => 'sci', 'Sed0000361' => 'sed', 'Sed0001706' => 'sed', 'Sed0002422' => 'sed', 'Sed0004029' => 'sed', 'Sed0004602' => 'sed', 'Sed0004943' => 'sed', 'Sed0008646' => 'sed', 'Sed0023313' => 'sed', 'Sed0024843' => 'sed', 'SEGI_00081' => 'sgi', 'SEGI_00947' => 'sgi', 'SEGI_04046' => 'sgi', 'SEGI_06880' => 'sgi', 'SEGI_09736' => 'sgi', 'SEGI_12741' => 'sgi', 'SEGI_14530' => 'sgi', 'SEGI_20705' => 'sgi', 'SEGI_26088' => 'sgi', 'SEGI_28323' => 'sgi', 'SEGI_33343' => 'sgi', 'SGA_v2.0_scaffold126G33775' => 'sas', 'SGA_v2.0_scaffold2G01337' => 'sas', 'SGA_v2.0_scaffold38G15006' => 'sas', 'SGA_v2.0_scaffold39G15264' => 'sas', 'SGA_v2.0_scaffold453G51880' => 'sas', 'SHI12696' => 'shi', 'SMO367G1096' => 'smo', 'Solyc01g068630.3' => 'sly', 'Solyc05g011880.3' => 'sly', 'Solyc06g076300.3' => 'sly', 'Solyc09g010940.4' => 'sly', 'Solyc09g075890.3' => 'sly', 'Sopen01g030560' => 'spe', 'Sopen05g006630' => 'spe', 'Sopen06g032720' => 'spe', 'Sopen09g005660' => 'spe', 'Sopen09g030690' => 'spe', 'Sp4g14540' => 'spa', 'Sp4g20030' => 'spa', 'Sp5g01320' => 'spa', 'Sp6g21170' => 'spa', 'Sp6g21180' => 'spa', 'Sp6g21190' => 'spa', 'Sp6g40220' => 'spa', 'TAR362G0122' => 'tar', 'TAR362G1338' => 'tar', 'TAR369G0590' => 'tar', 'TAR371G0824' => 'tar', 'TAR622G1429' => 'tar', 'TAR623G0734' => 'tar', 'TAR625G0441' => 'tar', 'TAR629G0976' => 'tar', 'TAR633G1195' => 'tar', 'TAR636G2660' => 'tar', 'THA.LOC104799440' => 'tha', 'THA.LOC104800966' => 'tha', 'THA.LOC104806559' => 'tha', 'THA.LOC104810765' => 'tha', 'THA.LOC104816266' => 'tha', 'THA.LOC104817419' => 'tha', 'THA.LOC104827021' => 'tha', 'Thecc.01G327400' => 'tca', 'Thecc.04G229200' => 'tca', 'Thecc.05G037400' => 'tca', 'Thecc.09G318600' => 'tca', 'Thecc.09G318700' => 'tca', 'Thhalv10006238m.g' => 'esa', 'Thhalv10014321m.g' => 'esa', 'Thhalv10014335m.g' => 'esa', 'Thhalv10015826m.g' => 'esa', 'Thhalv10017107m.g' => 'esa', 'Thhalv10017180m.g' => 'esa', 'Thhalv10029339m.g' => 'esa', 'TPR.G1699' => 'tpr', 'TPR.G23609' => 'tpr', 'TPR.G3081' => 'tpr', 'TPR.G40397' => 'tpr', 'TPR.G5522' => 'tpr', 'TPR.G5618' => 'tpr', 'TPR.G5626' => 'tpr', 'TWI09G1632' => 'twi', 'TWI23G1230' => 'twi', 'TWI53G1064' => 'twi', 'TWI59G0751' => 'twi', 'TWI74G0947' => 'twi', 'TWI77G0337' => 'twi', 'TWI79G1254' => 'twi', 'unitig_0.g2341' => 'ugi', 'unitig_26.g10006' => 'ugi', 'unitig_26.g10008' => 'ugi', 'unitig_26.g9192' => 'ugi', 'vmacro14547' => 'vma', 'vmacro15333' => 'vma', 'vmacro18743' => 'vma', 'vmacro20166' => 'vma', 'VMungo0331G0523' => 'vmu', 'VMungo0331G1202' => 'vmu', 'VMungo0720G1228' => 'vmu', 'VMungo0720G1514' => 'vmu', 'VMungo1080G0169' => 'vmu', 'VMungo1127G1475' => 'vmu', 'VMungo1383G1208' => 'vmu', 'VMungo1383G1698' => 'vmu', 'Zm00001eb012270' => 'zma', 'Zm00001eb054100' => 'zma', 'Zm00001eb063350' => 'zma', 'Zm00001eb328560' => 'zma', 'Zm00001eb342820' => 'zma', 'Zm00001eb362210' => 'zma', 'Zm00001eb397730' => 'zma', 'Zm00001eb399750' => 'zma' ) $gf_id = 'HOM05D000959' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000959' ) $data_identifier = 'HOM05D000959' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 5, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 5, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 10, 'mbi' => (int) 3, 'mco' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 2, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 3, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 11, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399750' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000959', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '622', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p07100' => 'bna', 'A03p11720' => 'bna', 'A05p08300' => 'bna', 'A05p13380' => 'bna', 'A09p54130' => 'bna', 'A10p16690' => 'bna', 'A10p16700' => 'bna', 'A10p33390' => 'bna', 'Aa31LG10G16020' => 'aar', 'Aa31LG1G11810' => 'aar', 'Aa31LG1G11830' => 'aar', 'Aa31LG1G22510' => 'aar', 'Aa31LG5G4890' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5793' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2310' => 'aag', 'Actinidia08499' => 'ach', 'Actinidia11262' => 'ach', 'Actinidia23926' => 'ach', 'Actinidia34420' => 'ach', 'Actinidia36970' => 'ach', 'Ah.02g111220' => 'amhyb', 'Ah.15g097750' => 'amhyb', 'AL4G27500' => 'aly', 'AL6G11470' => 'aly', 'AL8G35950' => 'aly', 'AL8G35960' => 'aly', 'AL8G35970' => 'aly', 'Aqoxy1G00912' => 'aox', 'Aqoxy2G02253' => 'aox', 'Aqoxy2G02411' => 'aox', 'Aqoxy5G00485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BZ66YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K8ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM4FUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6BF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HFV7XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25JBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0YNNV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MAKK6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P70IT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP2Z6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V61LZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YWP64R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3S9AI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7PGHH' => 'arhy', 'AT2G32150' => 'ath', 'AT3G62040' => 'ath', 'AT5G02230' => 'ath', 'AT5G59480' => 'ath', 'AT5G59490' => 'ath', 'ATR0332G060' => 'atr', 'ATR0559G190' => 'atr', 'ATR0693G294' => 'atr', 'Atru.chr3.3975' => 'acertr', 'Atru.chr3.3976' => 'acertr', 'Atru.chr3.3977' => 'acertr', 'Atru.chr4.2498' => 'acertr', 'Atru.chr5.838' => 'acertr', 'Atru.chr8.1990' => 'acertr', 'Atru.chr8.1991' => 'acertr', 'Atru.chr8.1992' => 'acertr', 'AUR62001759' => 'cqu', 'AUR62009545' => 'cqu', 'AUR62010474' => 'cqu', 'AUR62025820' => 'cqu', 'AUR62030422' => 'cqu', 'AUR62033605' => 'cqu', 'AUR62038615' => 'cqu', 'AUR62041347' => 'cqu', 'BcaB01g04574' => 'bca', 'BcaB02g09263' => 'bca', 'BcaB02g10453' => 'bca', 'BcaB05g22513' => 'bca', 'BcaB08g36253' => 'bca', 'BcaB08g36254' => 'bca', 'BcaC01g06519' => 'bca', 'BcaC02g11889' => 'bca', 'BcaC03g14010' => 'bca', 'BcaC03g18439' => 'bca', 'BcaC04g19765' => 'bca', 'BcaC09g48432' => 'bca', 'BcaNung07302' => 'bca', 'BolC2t06040H' => 'bol', 'BolC2t07346H' => 'bol', 'BolC3t13817H' => 'bol', 'BolC4t22625H' => 'bol', 'BolC4t23297H' => 'bol', 'BolC8t51278H' => 'bol', 'BolC9t58050H' => 'bol', 'BolC9t58051H' => 'bol', 'BolC9t60163H' => 'bol', 'BraA02t04712Z' => 'bra', 'BraA02t05791Z' => 'bra', 'BraA03t10483Z' => 'bra', 'BraA05t19795Z' => 'bra', 'BraA05t20276Z' => 'bra', 'BraA09t40827Z' => 'bra', 'BraA10t43750Z' => 'bra', 'BraA10t43751Z' => 'bra', 'BraA10t45370Z' => 'bra', 'C02p00400' => 'bna', 'C02p12460' => 'bna', 'C03p13680' => 'bna', 'C04p10270' => 'bna', 'C04p17500' => 'bna', 'C08p37010' => 'bna', 'C09p51880' => 'bna', 'C09p51890' => 'bna', 'C09p74300' => 'bna', 'CAN.G179.26' => 'can', 'CAN.G3384.1' => 'can', 'CAN.G394.68' => 'can', 'CAN.G907.13' => 'can', 'CANSAT11G0012' => 'cansat', 'CANSAT25G1586' => 'cansat', 'CANSAT35G0735' => 'cansat', 'CANSAT54G0556' => 'cansat', 'CANSAT64G0356' => 'cansat', 'CANSAT78G2042' => 'cansat', 'CARHR125920' => 'chi', 'CARHR131910' => 'chi', 'CARHR172390' => 'chi', 'CARHR211140' => 'chi', 'CARHR285850' => 'chi', 'CARHR285860' => 'chi', 'Carub.0004s1347' => 'cru', 'Carub.0004s1960' => 'cru', 'Carub.0005s2880' => 'cru', 'Carub.0006s0107' => 'cru', 'Carub.0008s2015' => 'cru', 'Carub.0008s2016' => 'cru', 'Carub.0008s2017' => 'cru', 'Ca_01315_v3' => 'car', 'Ca_05063_v3' => 'car', 'Ca_10231_v3' => 'car', 'Ca_10913_v3' => 'car', 'Ca_19156_v3' => 'car', 'Ca_23644_v3' => 'car', 'Ca_26735_v3' => 'car', 'Cc01_g13130' => 'ccan', 'Cc02_g21690' => 'ccan', 'Cc03_g03600' => 'ccan', 'Cc06_g02510' => 'ccan', 'CDE02G1265' => 'cde', 'CDE05G0415' => 'cde', 'CDE08G1082' => 'cde', 'Cfa005780' => 'cfa', 'Cfa011522' => 'cfa', 'Cfa011523' => 'cfa', 'Cfa015627' => 'cfa', 'Cfa017359' => 'cfa', 'Ciclev10005687m.g' => 'ccl', 'Ciclev10012173m.g' => 'ccl', 'Ciclev10021621m.g' => 'ccl', 'Ciclev10028968m.g' => 'ccl', 'Ciclev10029907m.g' => 'ccl', 'CiPaw.01G164800' => 'cil', 'CiPaw.07G083700' => 'cil', 'CiPaw.07G127000' => 'cil', 'CiPaw.07G136900' => 'cil', 'CiPaw.08G081700' => 'cil', 'CiPaw.09G194600' => 'cil', 'CiPaw.10G146500' => 'cil', 'CiPaw.13G091500' => 'cil', 'CiPaw.13G091600' => 'cil', 'ClCG00G003390' => 'cla', 'ClCG01G007220' => 'cla', 'ClCG03G001370' => 'cla', 'ClCG04G008100' => 'cla', 'ClCG06G006110' => 'cla', 'ClCG06G006130' => 'cla', 'ClCG10G021210' => 'cla', 'COL.COLO4_07648' => 'col', 'COL.COLO4_07650' => 'col', 'COL.COLO4_07651' => 'col', 'COL.COLO4_14780' => 'col', 'COL.COLO4_18546' => 'col', 'COL.COLO4_18547' => 'col', 'COL.COLO4_23103' => 'col', 'COL.COLO4_30419' => 'col', 'COL.COLO4_34232' => 'col', 'Cpa.g.sc169.20' => 'cpa', 'Cpa.g.sc57.45' => 'cpa', 'Cpa.g.sc58.124' => 'cpa', 'Cpa.g.sc58.125' => 'cpa', 'Cpa.g.sc81.118' => 'cpa', 'Cpa.g.sc81.119' => 'cpa', 'Cre12.g524700' => 'cre', 'CsaV3_1G034430' => 'csa', 'CsaV3_1G034440' => 'csa', 'CsaV3_1G034450' => 'csa', 'CsaV3_3G034830' => 'csa', 'CsaV3_4G025090' => 'csa', 'CsaV3_5G018660' => 'csa', 'CsaV3_6G038160' => 'csa', 'CSS0003447' => 'camsi', 'CSS0017840' => 'camsi', 'CSS0019260' => 'camsi', 'CSS0040375' => 'camsi', 'CSS0042533' => 'camsi', 'DCAR_005960' => 'dca', 'DCAR_012104' => 'dca', 'DCAR_012105' => 'dca', 'DCAR_012293' => 'dca', 'DCAR_015632' => 'dca', 'DCAR_024602' => 'dca', 'DCAR_028752' => 'dca', 'Dinv06261' => 'din', 'Dinv13982' => 'din', 'Dinv17029' => 'din', 'Dinv18463' => 'din', 'Dinv33181' => 'din', 'Dinv35585' => 'din', 'Dinv37161' => 'din', 'Dinv42977' => 'din', 'Dinv43122' => 'din', 'Dinv44517' => 'din', 'Duzib093G0256' => 'dzi', 'Duzib106G1254' => 'dzi', 'Duzib128G1789' => 'dzi', 'Duzib133G0633' => 'dzi', 'Duzib138G0510' => 'dzi', 'Duzib150G1084' => 'dzi', 'Duzib168G0488' => 'dzi', 'Duzib168G1523' => 'dzi', 'Duzib170G0133' => 'dzi', 'ECA234G1433' => 'eca', 'ECA236G1432' => 'eca', 'ECA236G2256' => 'eca', 'ECA236G2365' => 'eca', 'ECA236G4830' => 'eca', 'ECA248G1505' => 'eca', 'EL10Ac3g06431' => 'bvu', 'EL10Ac5g12577' => 'bvu', 'EL10Ac6g13533' => 'bvu', 'EL10Ac7g16045' => 'bvu', 'Eucgr.A01281' => 'egr', 'Eucgr.B02326' => 'egr', 'Eucgr.H03532' => 'egr', 'Eucgr.K00553' => 'egr', 'Eucgr.K03116' => 'egr', 'FAN02G3963' => 'fan', 'FAN05G0438' => 'fan', 'FAN09G2434' => 'fan', 'FAN12G3984' => 'fan', 'FAN14G0798' => 'fan', 'FAN17G0652' => 'fan', 'FAN19G1988' => 'fan', 'FAN22G0632' => 'fan', 'FAN23G0387' => 'fan', 'FAN26G1323' => 'fan', 'FAN28G0666' => 'fan', 'FvH4_1g26080' => 'fve', 'FvH4_3g36780' => 'fve', 'FvH4_4g15270' => 'fve', 'FvH4_6g13490' => 'fve', 'Glyma.01G098700' => 'gma', 'Glyma.03G065900' => 'gma', 'Glyma.03G073754' => 'gma', 'Glyma.03G073758' => 'gma', 'Glyma.03G083200' => 'gma', 'Glyma.03G225500' => 'gma', 'Glyma.05G037766' => 'gma', 'Glyma.07G133500' => 'gma', 'Glyma.10G139400' => 'gma', 'Glyma.10G248900' => 'gma', 'Glyma.11G137800' => 'gma', 'Glyma.12G061300' => 'gma', 'Glyma.13G337900' => 'gma', 'Glyma.15G036600' => 'gma', 'Glyma.18G182800' => 'gma', 'Glyma.19G222500' => 'gma', 'Glyma.20G144800' => 'gma', 'Gohir.A01G222000' => 'ghi', 'Gohir.A03G044000' => 'ghi', 'Gohir.A03G044100' => 'ghi', 'Gohir.A04G083100' => 'ghi', 'Gohir.A07G127200' => 'ghi', 'Gohir.A07G132400' => 'ghi', 'Gohir.A08G000700' => 'ghi', 'Gohir.A11G327300' => 'ghi', 'Gohir.D01G211500' => 'ghi', 'Gohir.D03G123400' => 'ghi', 'Gohir.D03G123500' => 'ghi', 'Gohir.D04G121800' => 'ghi', 'Gohir.D07G131500' => 'ghi', 'Gohir.D07G136600' => 'ghi', 'Gohir.D08G011600' => 'ghi', 'Gohir.D11G346200' => 'ghi', 'Gorai.001G142800' => 'gra', 'Gorai.001G148700' => 'gra', 'Gorai.002G257300' => 'gra', 'Gorai.003G130000' => 'gra', 'Gorai.003G130100' => 'gra', 'Gorai.004G005300' => 'gra', 'Gorai.007G376500' => 'gra', 'Gorai.012G104700' => 'gra', 'GSVIVG01017946001' => 'vvi', 'GSVIVG01024928001' => 'vvi', 'GSVIVG01028227001' => 'vvi', 'GSVIVG01034151001' => 'vvi', 'HanXRQChr05g0135031' => 'han', 'HanXRQChr05g0135041' => 'han', 'HanXRQChr05g0140021' => 'han', 'HanXRQChr06g0178981' => 'han', 'HanXRQChr07g0188251' => 'han', 'HanXRQChr08g0235311' => 'han', 'HanXRQChr09g0271011' => 'han', 'HanXRQChr10g0293321' => 'han', 'HanXRQChr13g0388171' => 'han', 'Haze_00916' => 'cav', 'Haze_05063' => 'cav', 'Haze_20814' => 'cav', 'Haze_24128' => 'cav', 'Hma1.2p1_0745F.1_g212010' => 'hma', 'Hma1.2p1_0757F.1_g213260' => 'hma', 'Hma1.2p1_0936F.1_g238840' => 'hma', 'Hma1.2p1_1735F.1_g299890' => 'hma', 'Hma1.2p1_1861F.1_g305685' => 'hma', 'HPP92_003397' => 'vpl', 'HPP92_012597' => 'vpl', 'HPP92_015520' => 'vpl', 'HPP92_015539' => 'vpl', 'HPP92_020373' => 'vpl', 'Hund04938' => 'sun', 'Hund10677' => 'sun', 'Hund11033' => 'sun', 'Hund12155' => 'sun', 'Lalb_Chr01g0022551' => 'lal', 'Lalb_Chr03g0042341' => 'lal', 'Lalb_Chr07g0192931' => 'lal', 'Lalb_Chr12g0209551' => 'lal', 'Lalb_Chr19g0125251' => 'lal', 'Lalb_Chr19g0137891' => 'lal', 'Lalb_Chr21g0304641' => 'lal', 'Lalb_Chr21g0309881' => 'lal', 'Lj1A5T12' => 'lonja', 'Lj1C148G10' => 'lonja', 'Lj2A93T83' => 'lonja', 'Lj3A738G68' => 'lonja', 'Lj3C966T1' => 'lonja', 'Lj3g0018958' => 'lja', 'Lj3g0021831' => 'lja', 'Lj3g0025443' => 'lja', 'Lj4g0026809' => 'lja', 'Lj5g0012558' => 'lja', 'Lj5g0021586' => 'lja', 'Lsat_1_v5_gn_5_156840' => 'lsa', 'Lsat_1_v5_gn_8_73460' => 'lsa', 'Lsat_1_v5_gn_8_73481' => 'lsa', 'Lsat_1_v5_gn_9_31601' => 'lsa', 'Lsat_1_v5_gn_9_77320' => 'lsa', 'Manes.01G171300' => 'mes', 'Manes.01G171400' => 'mes', 'Manes.01G236100' => 'mes', 'Manes.02G130500' => 'mes', 'Manes.02G130600' => 'mes', 'Manes.03G180200' => 'mes', 'Manes.05G007000' => 'mes', 'Manes.08G084400' => 'mes', 'Manes.09G092600' => 'mes', 'Manes.15G027900' => 'mes', 'MBI04_g40948_MAGBIO' => 'mbi', 'MBI14_g12123_MAGBIO' => 'mbi', 'MBI18_g28915_MAGBIO' => 'mbi', 'MCO09G053' => 'mco', 'MCO11G782' => 'mco', 'MCO15G215' => 'mco', 'MD03G1088500' => 'mdo', 'MD03G1088600' => 'mdo', 'MD04G1130800' => 'mdo', 'MD09G1291700' => 'mdo', 'MD11G1097500' => 'mdo', 'MD11G1097600' => 'mdo', 'MD12G1143900' => 'mdo', 'MD13G1191400' => 'mdo', 'MD16G1191500' => 'mdo', 'Medtr1g085570' => 'mtr', 'Medtr1g104610' => 'mtr', 'Medtr2g097520' => 'mtr', 'Medtr4g021800' => 'mtr', 'Medtr4g021825' => 'mtr', 'Medtr4g064270' => 'mtr', 'Medtr4g064380' => 'mtr', 'Medtr7g062150' => 'mtr', 'MELO3C003138.2' => 'cme', 'MELO3C005187.2' => 'cme', 'MELO3C009252.2' => 'cme', 'MELO3C014481.2' => 'cme', 'MELO3C020616.2' => 'cme', 'MELO3C020617.2' => 'cme', 'MELO3C020618.2' => 'cme', 'Migut.G00328' => 'egut', 'Migut.J00320' => 'egut', 'Migut.L01000' => 'egut', 'Migut.L01953' => 'egut', 'MSTRG.10253' => 'ama', 'MSTRG.19077' => 'ama', 'MSTRG.26780' => 'ama', 'MSTRG.4023' => 'ama', 'MSTRG.5655' => 'ama', 'MSTRG.9992' => 'ama', 'Nitab4.5_0000043g0310' => 'nta', 'Nitab4.5_0000463g0080' => 'nta', 'Nitab4.5_0000705g0170' => 'nta', 'Nitab4.5_0001326g0060' => 'nta', 'Nitab4.5_0001628g0030' => 'nta', 'Nitab4.5_0002103g0110' => 'nta', 'Nitab4.5_0002946g0030' => 'nta', 'Nitab4.5_0004639g0030' => 'nta', 'Nn2g11149' => 'nnu', 'Nn2g13389' => 'nnu', 'Nn4g25326' => 'nnu', 'Nn4g26290' => 'nnu', 'Nn5g29865' => 'nnu', 'Oeu004163.1' => 'oeu', 'Oeu006901.1' => 'oeu', 'Oeu010096.1' => 'oeu', 'Oeu024340.1' => 'oeu', 'Oeu048369.1' => 'oeu', 'Os01g0973000' => 'osa', 'Os03g0273800' => 'osa', 'Os03g0701200' => 'osa', 'Os03g0834050' => 'osa', 'Os07g0634400' => 'osa', 'Peaxi162Scf00092g01414' => 'pax', 'Peaxi162Scf00165g00818' => 'pax', 'Peaxi162Scf00309g00516' => 'pax', 'Peaxi162Scf00774g00218' => 'pax', 'PGR004G1824' => 'pgr', 'PGR004G2606' => 'pgr', 'PGR031G2716' => 'pgr', 'PGR102G2460' => 'pgr', 'PGR142G2599' => 'pgr', 'PGSC0003DMG400000843' => 'stu', 'PGSC0003DMG400008829' => 'stu', 'PGSC0003DMG400030418' => 'stu', 'PGSC0003DMG400031834' => 'stu', 'PGSC0003DMG401028300' => 'stu', 'PGSC0003DMG402028300' => 'stu', 'Phvul.001G219300' => 'pvu', 'Phvul.007G056000' => 'pvu', 'Phvul.007G208000' => 'pvu', 'Phvul.008G119500' => 'pvu', 'Phvul.010G011200' => 'pvu', 'Phvul.010G014800' => 'pvu', 'Phvul.011G062900' => 'pvu', 'Phvul.L007043' => 'pvu', 'Potri.001G242300' => 'ptr', 'Potri.002G185300' => 'ptr', 'Potri.006G086900' => 'ptr', 'Potri.008G151700' => 'ptr', 'Potri.009G033500' => 'ptr', 'Potri.010G089300' => 'ptr', 'Potri.014G110800' => 'ptr', 'Pp3c27_8130' => 'ppa', 'Pp3c6_27410' => 'ppa', 'PRCOL_00001659' => 'pco', 'PRCOL_00001927' => 'pco', 'PRCOL_00003649' => 'pco', 'Prupe.1G011600' => 'ppe', 'Prupe.3G000800' => 'ppe', 'Prupe.3G001100' => 'ppe', 'Prupe.6G072700' => 'ppe', 'Prupe.6G072800' => 'ppe', 'Prupe.6G257300' => 'ppe', 'Prupe.8G033000' => 'ppe', 'Psat0s2633g0080' => 'psa', 'Psat0s3396g0080' => 'psa', 'Psat0s3396g0200' => 'psa', 'Psat3g139080' => 'psa', 'Psat5g285080' => 'psa', 'Psat6g157760' => 'psa', 'Psat6g208440' => 'psa', 'Psat7g215320' => 'psa', 'Psat7g215400' => 'psa', 'Psat7g235600' => 'psa', 'Psat7g235760' => 'psa', 'PSO063G4603' => 'pso', 'PSO210G0182' => 'pso', 'PSO210G0196' => 'pso', 'PSO339G0394' => 'pso', 'PSO339G4127' => 'pso', 'PSO513G0064' => 'pso', 'PSO761G0079' => 'pso', 'QL01p031003' => 'qlo', 'QL01p031078' => 'qlo', 'QL06p003004' => 'qlo', 'QL07p048731' => 'qlo', 'QL09p037427' => 'qlo', 'RcHm_v2.0_Chr3g0466361' => 'rch', 'RcHm_v2.0_Chr3g0485571' => 'rch', 'RcHm_v2.0_Chr4g0416551' => 'rch', 'RcHm_v2.0_Chr5g0065831' => 'rch', 'Rhsim01G0230500' => 'rsi', 'Rhsim05G0194000' => 'rsi', 'Rhsim08G0250400' => 'rsi', 'Sabra02G0131000' => 'sbr', 'Sabra06G0066300' => 'sbr', 'Sabra08G0115500' => 'sbr', 'Sabra09G0023900' => 'sbr', 'Sabra10G0054000' => 'sbr', 'Sabra14G0081500' => 'sbr', 'Sabra16G0147100' => 'sbr', 'SalBow2G2957' => 'sbo', 'SalBow4G3320' => 'sbo', 'SalBow8G1894' => 'sbo', 'Sc07g0007950' => 'sci', 'Sc12g0001360' => 'sci', 'Sc13g0004330' => 'sci', 'Sc20g0005010' => 'sci', 'Sed0000361' => 'sed', 'Sed0001706' => 'sed', 'Sed0002422' => 'sed', 'Sed0004029' => 'sed', 'Sed0004602' => 'sed', 'Sed0004943' => 'sed', 'Sed0008646' => 'sed', 'Sed0023313' => 'sed', 'Sed0024843' => 'sed', 'SEGI_00081' => 'sgi', 'SEGI_00947' => 'sgi', 'SEGI_04046' => 'sgi', 'SEGI_06880' => 'sgi', 'SEGI_09736' => 'sgi', 'SEGI_12741' => 'sgi', 'SEGI_14530' => 'sgi', 'SEGI_20705' => 'sgi', 'SEGI_26088' => 'sgi', 'SEGI_28323' => 'sgi', 'SEGI_33343' => 'sgi', 'SGA_v2.0_scaffold126G33775' => 'sas', 'SGA_v2.0_scaffold2G01337' => 'sas', 'SGA_v2.0_scaffold38G15006' => 'sas', 'SGA_v2.0_scaffold39G15264' => 'sas', 'SGA_v2.0_scaffold453G51880' => 'sas', 'SHI12696' => 'shi', 'SMO367G1096' => 'smo', 'Solyc01g068630.3' => 'sly', 'Solyc05g011880.3' => 'sly', 'Solyc06g076300.3' => 'sly', 'Solyc09g010940.4' => 'sly', 'Solyc09g075890.3' => 'sly', 'Sopen01g030560' => 'spe', 'Sopen05g006630' => 'spe', 'Sopen06g032720' => 'spe', 'Sopen09g005660' => 'spe', 'Sopen09g030690' => 'spe', 'Sp4g14540' => 'spa', 'Sp4g20030' => 'spa', 'Sp5g01320' => 'spa', 'Sp6g21170' => 'spa', 'Sp6g21180' => 'spa', 'Sp6g21190' => 'spa', 'Sp6g40220' => 'spa', 'TAR362G0122' => 'tar', 'TAR362G1338' => 'tar', 'TAR369G0590' => 'tar', 'TAR371G0824' => 'tar', 'TAR622G1429' => 'tar', 'TAR623G0734' => 'tar', 'TAR625G0441' => 'tar', 'TAR629G0976' => 'tar', 'TAR633G1195' => 'tar', 'TAR636G2660' => 'tar', 'THA.LOC104799440' => 'tha', 'THA.LOC104800966' => 'tha', 'THA.LOC104806559' => 'tha', 'THA.LOC104810765' => 'tha', 'THA.LOC104816266' => 'tha', 'THA.LOC104817419' => 'tha', 'THA.LOC104827021' => 'tha', 'Thecc.01G327400' => 'tca', 'Thecc.04G229200' => 'tca', 'Thecc.05G037400' => 'tca', 'Thecc.09G318600' => 'tca', 'Thecc.09G318700' => 'tca', 'Thhalv10006238m.g' => 'esa', 'Thhalv10014321m.g' => 'esa', 'Thhalv10014335m.g' => 'esa', 'Thhalv10015826m.g' => 'esa', 'Thhalv10017107m.g' => 'esa', 'Thhalv10017180m.g' => 'esa', 'Thhalv10029339m.g' => 'esa', 'TPR.G1699' => 'tpr', 'TPR.G23609' => 'tpr', 'TPR.G3081' => 'tpr', 'TPR.G40397' => 'tpr', 'TPR.G5522' => 'tpr', 'TPR.G5618' => 'tpr', 'TPR.G5626' => 'tpr', 'TWI09G1632' => 'twi', 'TWI23G1230' => 'twi', 'TWI53G1064' => 'twi', 'TWI59G0751' => 'twi', 'TWI74G0947' => 'twi', 'TWI77G0337' => 'twi', 'TWI79G1254' => 'twi', 'unitig_0.g2341' => 'ugi', 'unitig_26.g10006' => 'ugi', 'unitig_26.g10008' => 'ugi', 'unitig_26.g9192' => 'ugi', 'vmacro14547' => 'vma', 'vmacro15333' => 'vma', 'vmacro18743' => 'vma', 'vmacro20166' => 'vma', 'VMungo0331G0523' => 'vmu', 'VMungo0331G1202' => 'vmu', 'VMungo0720G1228' => 'vmu', 'VMungo0720G1514' => 'vmu', 'VMungo1080G0169' => 'vmu', 'VMungo1127G1475' => 'vmu', 'VMungo1383G1208' => 'vmu', 'VMungo1383G1698' => 'vmu', 'Zm00001eb012270' => 'zma', 'Zm00001eb054100' => 'zma', 'Zm00001eb063350' => 'zma', 'Zm00001eb328560' => 'zma', 'Zm00001eb342820' => 'zma', 'Zm00001eb362210' => 'zma', 'Zm00001eb397730' => 'zma', 'Zm00001eb399750' => 'zma' ), 'gf_id' => 'HOM05D000959', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000959' ), 'data_identifier' => 'HOM05D000959', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000959', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '622', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p07100' => 'bna', 'A03p11720' => 'bna', 'A05p08300' => 'bna', 'A05p13380' => 'bna', 'A09p54130' => 'bna', 'A10p16690' => 'bna', 'A10p16700' => 'bna', 'A10p33390' => 'bna', 'Aa31LG10G16020' => 'aar', 'Aa31LG1G11810' => 'aar', 'Aa31LG1G11830' => 'aar', 'Aa31LG1G22510' => 'aar', 'Aa31LG5G4890' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5793' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2310' => 'aag', 'Actinidia08499' => 'ach', 'Actinidia11262' => 'ach', 'Actinidia23926' => 'ach', 'Actinidia34420' => 'ach', 'Actinidia36970' => 'ach', 'Ah.02g111220' => 'amhyb', 'Ah.15g097750' => 'amhyb', 'AL4G27500' => 'aly', 'AL6G11470' => 'aly', 'AL8G35950' => 'aly', 'AL8G35960' => 'aly', 'AL8G35970' => 'aly', 'Aqoxy1G00912' => 'aox', 'Aqoxy2G02253' => 'aox', 'Aqoxy2G02411' => 'aox', 'Aqoxy5G00485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BZ66YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K8ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM4FUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6BF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HFV7XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25JBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0YNNV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MAKK6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P70IT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP2Z6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V61LZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YWP64R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3S9AI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7PGHH' => 'arhy', 'AT2G32150' => 'ath', 'AT3G62040' => 'ath', 'AT5G02230' => 'ath', 'AT5G59480' => 'ath', 'AT5G59490' => 'ath', 'ATR0332G060' => 'atr', 'ATR0559G190' => 'atr', 'ATR0693G294' => 'atr', 'Atru.chr3.3975' => 'acertr', 'Atru.chr3.3976' => 'acertr', 'Atru.chr3.3977' => 'acertr', 'Atru.chr4.2498' => 'acertr', 'Atru.chr5.838' => 'acertr', 'Atru.chr8.1990' => 'acertr', 'Atru.chr8.1991' => 'acertr', 'Atru.chr8.1992' => 'acertr', 'AUR62001759' => 'cqu', 'AUR62009545' => 'cqu', 'AUR62010474' => 'cqu', 'AUR62025820' => 'cqu', 'AUR62030422' => 'cqu', 'AUR62033605' => 'cqu', 'AUR62038615' => 'cqu', 'AUR62041347' => 'cqu', 'BcaB01g04574' => 'bca', 'BcaB02g09263' => 'bca', 'BcaB02g10453' => 'bca', 'BcaB05g22513' => 'bca', 'BcaB08g36253' => 'bca', 'BcaB08g36254' => 'bca', 'BcaC01g06519' => 'bca', 'BcaC02g11889' => 'bca', 'BcaC03g14010' => 'bca', 'BcaC03g18439' => 'bca', 'BcaC04g19765' => 'bca', 'BcaC09g48432' => 'bca', 'BcaNung07302' => 'bca', 'BolC2t06040H' => 'bol', 'BolC2t07346H' => 'bol', 'BolC3t13817H' => 'bol', 'BolC4t22625H' => 'bol', 'BolC4t23297H' => 'bol', 'BolC8t51278H' => 'bol', 'BolC9t58050H' => 'bol', 'BolC9t58051H' => 'bol', 'BolC9t60163H' => 'bol', 'BraA02t04712Z' => 'bra', 'BraA02t05791Z' => 'bra', 'BraA03t10483Z' => 'bra', 'BraA05t19795Z' => 'bra', 'BraA05t20276Z' => 'bra', 'BraA09t40827Z' => 'bra', 'BraA10t43750Z' => 'bra', 'BraA10t43751Z' => 'bra', 'BraA10t45370Z' => 'bra', 'C02p00400' => 'bna', 'C02p12460' => 'bna', 'C03p13680' => 'bna', 'C04p10270' => 'bna', 'C04p17500' => 'bna', 'C08p37010' => 'bna', 'C09p51880' => 'bna', 'C09p51890' => 'bna', 'C09p74300' => 'bna', 'CAN.G179.26' => 'can', 'CAN.G3384.1' => 'can', 'CAN.G394.68' => 'can', 'CAN.G907.13' => 'can', 'CANSAT11G0012' => 'cansat', 'CANSAT25G1586' => 'cansat', 'CANSAT35G0735' => 'cansat', 'CANSAT54G0556' => 'cansat', 'CANSAT64G0356' => 'cansat', 'CANSAT78G2042' => 'cansat', 'CARHR125920' => 'chi', 'CARHR131910' => 'chi', 'CARHR172390' => 'chi', 'CARHR211140' => 'chi', 'CARHR285850' => 'chi', 'CARHR285860' => 'chi', 'Carub.0004s1347' => 'cru', 'Carub.0004s1960' => 'cru', 'Carub.0005s2880' => 'cru', 'Carub.0006s0107' => 'cru', 'Carub.0008s2015' => 'cru', 'Carub.0008s2016' => 'cru', 'Carub.0008s2017' => 'cru', 'Ca_01315_v3' => 'car', 'Ca_05063_v3' => 'car', 'Ca_10231_v3' => 'car', 'Ca_10913_v3' => 'car', 'Ca_19156_v3' => 'car', 'Ca_23644_v3' => 'car', 'Ca_26735_v3' => 'car', 'Cc01_g13130' => 'ccan', 'Cc02_g21690' => 'ccan', 'Cc03_g03600' => 'ccan', 'Cc06_g02510' => 'ccan', 'CDE02G1265' => 'cde', 'CDE05G0415' => 'cde', 'CDE08G1082' => 'cde', 'Cfa005780' => 'cfa', 'Cfa011522' => 'cfa', 'Cfa011523' => 'cfa', 'Cfa015627' => 'cfa', 'Cfa017359' => 'cfa', 'Ciclev10005687m.g' => 'ccl', 'Ciclev10012173m.g' => 'ccl', 'Ciclev10021621m.g' => 'ccl', 'Ciclev10028968m.g' => 'ccl', 'Ciclev10029907m.g' => 'ccl', 'CiPaw.01G164800' => 'cil', 'CiPaw.07G083700' => 'cil', 'CiPaw.07G127000' => 'cil', 'CiPaw.07G136900' => 'cil', 'CiPaw.08G081700' => 'cil', 'CiPaw.09G194600' => 'cil', 'CiPaw.10G146500' => 'cil', 'CiPaw.13G091500' => 'cil', 'CiPaw.13G091600' => 'cil', 'ClCG00G003390' => 'cla', 'ClCG01G007220' => 'cla', 'ClCG03G001370' => 'cla', 'ClCG04G008100' => 'cla', 'ClCG06G006110' => 'cla', 'ClCG06G006130' => 'cla', 'ClCG10G021210' => 'cla', 'COL.COLO4_07648' => 'col', 'COL.COLO4_07650' => 'col', 'COL.COLO4_07651' => 'col', 'COL.COLO4_14780' => 'col', 'COL.COLO4_18546' => 'col', 'COL.COLO4_18547' => 'col', 'COL.COLO4_23103' => 'col', 'COL.COLO4_30419' => 'col', 'COL.COLO4_34232' => 'col', 'Cpa.g.sc169.20' => 'cpa', 'Cpa.g.sc57.45' => 'cpa', 'Cpa.g.sc58.124' => 'cpa', 'Cpa.g.sc58.125' => 'cpa', 'Cpa.g.sc81.118' => 'cpa', 'Cpa.g.sc81.119' => 'cpa', 'Cre12.g524700' => 'cre', 'CsaV3_1G034430' => 'csa', 'CsaV3_1G034440' => 'csa', 'CsaV3_1G034450' => 'csa', 'CsaV3_3G034830' => 'csa', 'CsaV3_4G025090' => 'csa', 'CsaV3_5G018660' => 'csa', 'CsaV3_6G038160' => 'csa', 'CSS0003447' => 'camsi', 'CSS0017840' => 'camsi', 'CSS0019260' => 'camsi', 'CSS0040375' => 'camsi', 'CSS0042533' => 'camsi', 'DCAR_005960' => 'dca', 'DCAR_012104' => 'dca', 'DCAR_012105' => 'dca', 'DCAR_012293' => 'dca', 'DCAR_015632' => 'dca', 'DCAR_024602' => 'dca', 'DCAR_028752' => 'dca', 'Dinv06261' => 'din', 'Dinv13982' => 'din', 'Dinv17029' => 'din', 'Dinv18463' => 'din', 'Dinv33181' => 'din', 'Dinv35585' => 'din', 'Dinv37161' => 'din', 'Dinv42977' => 'din', 'Dinv43122' => 'din', 'Dinv44517' => 'din', 'Duzib093G0256' => 'dzi', 'Duzib106G1254' => 'dzi', 'Duzib128G1789' => 'dzi', 'Duzib133G0633' => 'dzi', 'Duzib138G0510' => 'dzi', 'Duzib150G1084' => 'dzi', 'Duzib168G0488' => 'dzi', 'Duzib168G1523' => 'dzi', 'Duzib170G0133' => 'dzi', 'ECA234G1433' => 'eca', 'ECA236G1432' => 'eca', 'ECA236G2256' => 'eca', 'ECA236G2365' => 'eca', 'ECA236G4830' => 'eca', 'ECA248G1505' => 'eca', 'EL10Ac3g06431' => 'bvu', 'EL10Ac5g12577' => 'bvu', 'EL10Ac6g13533' => 'bvu', 'EL10Ac7g16045' => 'bvu', 'Eucgr.A01281' => 'egr', 'Eucgr.B02326' => 'egr', 'Eucgr.H03532' => 'egr', 'Eucgr.K00553' => 'egr', 'Eucgr.K03116' => 'egr', 'FAN02G3963' => 'fan', 'FAN05G0438' => 'fan', 'FAN09G2434' => 'fan', 'FAN12G3984' => 'fan', 'FAN14G0798' => 'fan', 'FAN17G0652' => 'fan', 'FAN19G1988' => 'fan', 'FAN22G0632' => 'fan', 'FAN23G0387' => 'fan', 'FAN26G1323' => 'fan', 'FAN28G0666' => 'fan', 'FvH4_1g26080' => 'fve', 'FvH4_3g36780' => 'fve', 'FvH4_4g15270' => 'fve', 'FvH4_6g13490' => 'fve', 'Glyma.01G098700' => 'gma', 'Glyma.03G065900' => 'gma', 'Glyma.03G073754' => 'gma', 'Glyma.03G073758' => 'gma', 'Glyma.03G083200' => 'gma', 'Glyma.03G225500' => 'gma', 'Glyma.05G037766' => 'gma', 'Glyma.07G133500' => 'gma', 'Glyma.10G139400' => 'gma', 'Glyma.10G248900' => 'gma', 'Glyma.11G137800' => 'gma', 'Glyma.12G061300' => 'gma', 'Glyma.13G337900' => 'gma', 'Glyma.15G036600' => 'gma', 'Glyma.18G182800' => 'gma', 'Glyma.19G222500' => 'gma', 'Glyma.20G144800' => 'gma', 'Gohir.A01G222000' => 'ghi', 'Gohir.A03G044000' => 'ghi', 'Gohir.A03G044100' => 'ghi', 'Gohir.A04G083100' => 'ghi', 'Gohir.A07G127200' => 'ghi', 'Gohir.A07G132400' => 'ghi', 'Gohir.A08G000700' => 'ghi', 'Gohir.A11G327300' => 'ghi', 'Gohir.D01G211500' => 'ghi', 'Gohir.D03G123400' => 'ghi', 'Gohir.D03G123500' => 'ghi', 'Gohir.D04G121800' => 'ghi', 'Gohir.D07G131500' => 'ghi', 'Gohir.D07G136600' => 'ghi', 'Gohir.D08G011600' => 'ghi', 'Gohir.D11G346200' => 'ghi', 'Gorai.001G142800' => 'gra', 'Gorai.001G148700' => 'gra', 'Gorai.002G257300' => 'gra', 'Gorai.003G130000' => 'gra', 'Gorai.003G130100' => 'gra', 'Gorai.004G005300' => 'gra', 'Gorai.007G376500' => 'gra', 'Gorai.012G104700' => 'gra', 'GSVIVG01017946001' => 'vvi', 'GSVIVG01024928001' => 'vvi', 'GSVIVG01028227001' => 'vvi', 'GSVIVG01034151001' => 'vvi', 'HanXRQChr05g0135031' => 'han', 'HanXRQChr05g0135041' => 'han', 'HanXRQChr05g0140021' => 'han', 'HanXRQChr06g0178981' => 'han', 'HanXRQChr07g0188251' => 'han', 'HanXRQChr08g0235311' => 'han', 'HanXRQChr09g0271011' => 'han', 'HanXRQChr10g0293321' => 'han', 'HanXRQChr13g0388171' => 'han', 'Haze_00916' => 'cav', 'Haze_05063' => 'cav', 'Haze_20814' => 'cav', 'Haze_24128' => 'cav', 'Hma1.2p1_0745F.1_g212010' => 'hma', 'Hma1.2p1_0757F.1_g213260' => 'hma', 'Hma1.2p1_0936F.1_g238840' => 'hma', 'Hma1.2p1_1735F.1_g299890' => 'hma', 'Hma1.2p1_1861F.1_g305685' => 'hma', 'HPP92_003397' => 'vpl', 'HPP92_012597' => 'vpl', 'HPP92_015520' => 'vpl', 'HPP92_015539' => 'vpl', 'HPP92_020373' => 'vpl', 'Hund04938' => 'sun', 'Hund10677' => 'sun', 'Hund11033' => 'sun', 'Hund12155' => 'sun', 'Lalb_Chr01g0022551' => 'lal', 'Lalb_Chr03g0042341' => 'lal', 'Lalb_Chr07g0192931' => 'lal', 'Lalb_Chr12g0209551' => 'lal', 'Lalb_Chr19g0125251' => 'lal', 'Lalb_Chr19g0137891' => 'lal', 'Lalb_Chr21g0304641' => 'lal', 'Lalb_Chr21g0309881' => 'lal', 'Lj1A5T12' => 'lonja', 'Lj1C148G10' => 'lonja', 'Lj2A93T83' => 'lonja', 'Lj3A738G68' => 'lonja', 'Lj3C966T1' => 'lonja', 'Lj3g0018958' => 'lja', 'Lj3g0021831' => 'lja', 'Lj3g0025443' => 'lja', 'Lj4g0026809' => 'lja', 'Lj5g0012558' => 'lja', 'Lj5g0021586' => 'lja', 'Lsat_1_v5_gn_5_156840' => 'lsa', 'Lsat_1_v5_gn_8_73460' => 'lsa', 'Lsat_1_v5_gn_8_73481' => 'lsa', 'Lsat_1_v5_gn_9_31601' => 'lsa', 'Lsat_1_v5_gn_9_77320' => 'lsa', 'Manes.01G171300' => 'mes', 'Manes.01G171400' => 'mes', 'Manes.01G236100' => 'mes', 'Manes.02G130500' => 'mes', 'Manes.02G130600' => 'mes', 'Manes.03G180200' => 'mes', 'Manes.05G007000' => 'mes', 'Manes.08G084400' => 'mes', 'Manes.09G092600' => 'mes', 'Manes.15G027900' => 'mes', 'MBI04_g40948_MAGBIO' => 'mbi', 'MBI14_g12123_MAGBIO' => 'mbi', 'MBI18_g28915_MAGBIO' => 'mbi', 'MCO09G053' => 'mco', 'MCO11G782' => 'mco', 'MCO15G215' => 'mco', 'MD03G1088500' => 'mdo', 'MD03G1088600' => 'mdo', 'MD04G1130800' => 'mdo', 'MD09G1291700' => 'mdo', 'MD11G1097500' => 'mdo', 'MD11G1097600' => 'mdo', 'MD12G1143900' => 'mdo', 'MD13G1191400' => 'mdo', 'MD16G1191500' => 'mdo', 'Medtr1g085570' => 'mtr', 'Medtr1g104610' => 'mtr', 'Medtr2g097520' => 'mtr', 'Medtr4g021800' => 'mtr', 'Medtr4g021825' => 'mtr', 'Medtr4g064270' => 'mtr', 'Medtr4g064380' => 'mtr', 'Medtr7g062150' => 'mtr', 'MELO3C003138.2' => 'cme', 'MELO3C005187.2' => 'cme', 'MELO3C009252.2' => 'cme', 'MELO3C014481.2' => 'cme', 'MELO3C020616.2' => 'cme', 'MELO3C020617.2' => 'cme', 'MELO3C020618.2' => 'cme', 'Migut.G00328' => 'egut', 'Migut.J00320' => 'egut', 'Migut.L01000' => 'egut', 'Migut.L01953' => 'egut', 'MSTRG.10253' => 'ama', 'MSTRG.19077' => 'ama', 'MSTRG.26780' => 'ama', 'MSTRG.4023' => 'ama', 'MSTRG.5655' => 'ama', 'MSTRG.9992' => 'ama', 'Nitab4.5_0000043g0310' => 'nta', 'Nitab4.5_0000463g0080' => 'nta', 'Nitab4.5_0000705g0170' => 'nta', 'Nitab4.5_0001326g0060' => 'nta', 'Nitab4.5_0001628g0030' => 'nta', 'Nitab4.5_0002103g0110' => 'nta', 'Nitab4.5_0002946g0030' => 'nta', 'Nitab4.5_0004639g0030' => 'nta', 'Nn2g11149' => 'nnu', 'Nn2g13389' => 'nnu', 'Nn4g25326' => 'nnu', 'Nn4g26290' => 'nnu', 'Nn5g29865' => 'nnu', 'Oeu004163.1' => 'oeu', 'Oeu006901.1' => 'oeu', 'Oeu010096.1' => 'oeu', 'Oeu024340.1' => 'oeu', 'Oeu048369.1' => 'oeu', 'Os01g0973000' => 'osa', 'Os03g0273800' => 'osa', 'Os03g0701200' => 'osa', 'Os03g0834050' => 'osa', 'Os07g0634400' => 'osa', 'Peaxi162Scf00092g01414' => 'pax', 'Peaxi162Scf00165g00818' => 'pax', 'Peaxi162Scf00309g00516' => 'pax', 'Peaxi162Scf00774g00218' => 'pax', 'PGR004G1824' => 'pgr', 'PGR004G2606' => 'pgr', 'PGR031G2716' => 'pgr', 'PGR102G2460' => 'pgr', 'PGR142G2599' => 'pgr', 'PGSC0003DMG400000843' => 'stu', 'PGSC0003DMG400008829' => 'stu', 'PGSC0003DMG400030418' => 'stu', 'PGSC0003DMG400031834' => 'stu', 'PGSC0003DMG401028300' => 'stu', 'PGSC0003DMG402028300' => 'stu', 'Phvul.001G219300' => 'pvu', 'Phvul.007G056000' => 'pvu', 'Phvul.007G208000' => 'pvu', 'Phvul.008G119500' => 'pvu', 'Phvul.010G011200' => 'pvu', 'Phvul.010G014800' => 'pvu', 'Phvul.011G062900' => 'pvu', 'Phvul.L007043' => 'pvu', 'Potri.001G242300' => 'ptr', 'Potri.002G185300' => 'ptr', 'Potri.006G086900' => 'ptr', 'Potri.008G151700' => 'ptr', 'Potri.009G033500' => 'ptr', 'Potri.010G089300' => 'ptr', 'Potri.014G110800' => 'ptr', 'Pp3c27_8130' => 'ppa', 'Pp3c6_27410' => 'ppa', 'PRCOL_00001659' => 'pco', 'PRCOL_00001927' => 'pco', 'PRCOL_00003649' => 'pco', 'Prupe.1G011600' => 'ppe', 'Prupe.3G000800' => 'ppe', 'Prupe.3G001100' => 'ppe', 'Prupe.6G072700' => 'ppe', 'Prupe.6G072800' => 'ppe', 'Prupe.6G257300' => 'ppe', 'Prupe.8G033000' => 'ppe', 'Psat0s2633g0080' => 'psa', 'Psat0s3396g0080' => 'psa', 'Psat0s3396g0200' => 'psa', 'Psat3g139080' => 'psa', 'Psat5g285080' => 'psa', 'Psat6g157760' => 'psa', 'Psat6g208440' => 'psa', 'Psat7g215320' => 'psa', 'Psat7g215400' => 'psa', 'Psat7g235600' => 'psa', 'Psat7g235760' => 'psa', 'PSO063G4603' => 'pso', 'PSO210G0182' => 'pso', 'PSO210G0196' => 'pso', 'PSO339G0394' => 'pso', 'PSO339G4127' => 'pso', 'PSO513G0064' => 'pso', 'PSO761G0079' => 'pso', 'QL01p031003' => 'qlo', 'QL01p031078' => 'qlo', 'QL06p003004' => 'qlo', 'QL07p048731' => 'qlo', 'QL09p037427' => 'qlo', 'RcHm_v2.0_Chr3g0466361' => 'rch', 'RcHm_v2.0_Chr3g0485571' => 'rch', 'RcHm_v2.0_Chr4g0416551' => 'rch', 'RcHm_v2.0_Chr5g0065831' => 'rch', 'Rhsim01G0230500' => 'rsi', 'Rhsim05G0194000' => 'rsi', 'Rhsim08G0250400' => 'rsi', 'Sabra02G0131000' => 'sbr', 'Sabra06G0066300' => 'sbr', 'Sabra08G0115500' => 'sbr', 'Sabra09G0023900' => 'sbr', 'Sabra10G0054000' => 'sbr', 'Sabra14G0081500' => 'sbr', 'Sabra16G0147100' => 'sbr', 'SalBow2G2957' => 'sbo', 'SalBow4G3320' => 'sbo', 'SalBow8G1894' => 'sbo', 'Sc07g0007950' => 'sci', 'Sc12g0001360' => 'sci', 'Sc13g0004330' => 'sci', 'Sc20g0005010' => 'sci', 'Sed0000361' => 'sed', 'Sed0001706' => 'sed', 'Sed0002422' => 'sed', 'Sed0004029' => 'sed', 'Sed0004602' => 'sed', 'Sed0004943' => 'sed', 'Sed0008646' => 'sed', 'Sed0023313' => 'sed', 'Sed0024843' => 'sed', 'SEGI_00081' => 'sgi', 'SEGI_00947' => 'sgi', 'SEGI_04046' => 'sgi', 'SEGI_06880' => 'sgi', 'SEGI_09736' => 'sgi', 'SEGI_12741' => 'sgi', 'SEGI_14530' => 'sgi', 'SEGI_20705' => 'sgi', 'SEGI_26088' => 'sgi', 'SEGI_28323' => 'sgi', 'SEGI_33343' => 'sgi', 'SGA_v2.0_scaffold126G33775' => 'sas', 'SGA_v2.0_scaffold2G01337' => 'sas', 'SGA_v2.0_scaffold38G15006' => 'sas', 'SGA_v2.0_scaffold39G15264' => 'sas', 'SGA_v2.0_scaffold453G51880' => 'sas', 'SHI12696' => 'shi', 'SMO367G1096' => 'smo', 'Solyc01g068630.3' => 'sly', 'Solyc05g011880.3' => 'sly', 'Solyc06g076300.3' => 'sly', 'Solyc09g010940.4' => 'sly', 'Solyc09g075890.3' => 'sly', 'Sopen01g030560' => 'spe', 'Sopen05g006630' => 'spe', 'Sopen06g032720' => 'spe', 'Sopen09g005660' => 'spe', 'Sopen09g030690' => 'spe', 'Sp4g14540' => 'spa', 'Sp4g20030' => 'spa', 'Sp5g01320' => 'spa', 'Sp6g21170' => 'spa', 'Sp6g21180' => 'spa', 'Sp6g21190' => 'spa', 'Sp6g40220' => 'spa', 'TAR362G0122' => 'tar', 'TAR362G1338' => 'tar', 'TAR369G0590' => 'tar', 'TAR371G0824' => 'tar', 'TAR622G1429' => 'tar', 'TAR623G0734' => 'tar', 'TAR625G0441' => 'tar', 'TAR629G0976' => 'tar', 'TAR633G1195' => 'tar', 'TAR636G2660' => 'tar', 'THA.LOC104799440' => 'tha', 'THA.LOC104800966' => 'tha', 'THA.LOC104806559' => 'tha', 'THA.LOC104810765' => 'tha', 'THA.LOC104816266' => 'tha', 'THA.LOC104817419' => 'tha', 'THA.LOC104827021' => 'tha', 'Thecc.01G327400' => 'tca', 'Thecc.04G229200' => 'tca', 'Thecc.05G037400' => 'tca', 'Thecc.09G318600' => 'tca', 'Thecc.09G318700' => 'tca', 'Thhalv10006238m.g' => 'esa', 'Thhalv10014321m.g' => 'esa', 'Thhalv10014335m.g' => 'esa', 'Thhalv10015826m.g' => 'esa', 'Thhalv10017107m.g' => 'esa', 'Thhalv10017180m.g' => 'esa', 'Thhalv10029339m.g' => 'esa', 'TPR.G1699' => 'tpr', 'TPR.G23609' => 'tpr', 'TPR.G3081' => 'tpr', 'TPR.G40397' => 'tpr', 'TPR.G5522' => 'tpr', 'TPR.G5618' => 'tpr', 'TPR.G5626' => 'tpr', 'TWI09G1632' => 'twi', 'TWI23G1230' => 'twi', 'TWI53G1064' => 'twi', 'TWI59G0751' => 'twi', 'TWI74G0947' => 'twi', 'TWI77G0337' => 'twi', 'TWI79G1254' => 'twi', 'unitig_0.g2341' => 'ugi', 'unitig_26.g10006' => 'ugi', 'unitig_26.g10008' => 'ugi', 'unitig_26.g9192' => 'ugi', 'vmacro14547' => 'vma', 'vmacro15333' => 'vma', 'vmacro18743' => 'vma', 'vmacro20166' => 'vma', 'VMungo0331G0523' => 'vmu', 'VMungo0331G1202' => 'vmu', 'VMungo0720G1228' => 'vmu', 'VMungo0720G1514' => 'vmu', 'VMungo1080G0169' => 'vmu', 'VMungo1127G1475' => 'vmu', 'VMungo1383G1208' => 'vmu', 'VMungo1383G1698' => 'vmu', 'Zm00001eb012270' => 'zma', 'Zm00001eb054100' => 'zma', 'Zm00001eb063350' => 'zma', 'Zm00001eb328560' => 'zma', 'Zm00001eb342820' => 'zma', 'Zm00001eb362210' => 'zma', 'Zm00001eb397730' => 'zma', 'Zm00001eb399750' => 'zma' ) $gf_id = 'HOM05D000959' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000959' ) $data_identifier = 'HOM05D000959' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 5, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 5, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 10, 'mbi' => (int) 3, 'mco' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 2, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 3, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 11, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399750' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000959', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '622', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p07100' => 'bna', 'A03p11720' => 'bna', 'A05p08300' => 'bna', 'A05p13380' => 'bna', 'A09p54130' => 'bna', 'A10p16690' => 'bna', 'A10p16700' => 'bna', 'A10p33390' => 'bna', 'Aa31LG10G16020' => 'aar', 'Aa31LG1G11810' => 'aar', 'Aa31LG1G11830' => 'aar', 'Aa31LG1G22510' => 'aar', 'Aa31LG5G4890' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5793' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2310' => 'aag', 'Actinidia08499' => 'ach', 'Actinidia11262' => 'ach', 'Actinidia23926' => 'ach', 'Actinidia34420' => 'ach', 'Actinidia36970' => 'ach', 'Ah.02g111220' => 'amhyb', 'Ah.15g097750' => 'amhyb', 'AL4G27500' => 'aly', 'AL6G11470' => 'aly', 'AL8G35950' => 'aly', 'AL8G35960' => 'aly', 'AL8G35970' => 'aly', 'Aqoxy1G00912' => 'aox', 'Aqoxy2G02253' => 'aox', 'Aqoxy2G02411' => 'aox', 'Aqoxy5G00485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BZ66YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K8ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM4FUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6BF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HFV7XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25JBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0YNNV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MAKK6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P70IT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP2Z6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V61LZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YWP64R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3S9AI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7PGHH' => 'arhy', 'AT2G32150' => 'ath', 'AT3G62040' => 'ath', 'AT5G02230' => 'ath', 'AT5G59480' => 'ath', 'AT5G59490' => 'ath', 'ATR0332G060' => 'atr', 'ATR0559G190' => 'atr', 'ATR0693G294' => 'atr', 'Atru.chr3.3975' => 'acertr', 'Atru.chr3.3976' => 'acertr', 'Atru.chr3.3977' => 'acertr', 'Atru.chr4.2498' => 'acertr', 'Atru.chr5.838' => 'acertr', 'Atru.chr8.1990' => 'acertr', 'Atru.chr8.1991' => 'acertr', 'Atru.chr8.1992' => 'acertr', 'AUR62001759' => 'cqu', 'AUR62009545' => 'cqu', 'AUR62010474' => 'cqu', 'AUR62025820' => 'cqu', 'AUR62030422' => 'cqu', 'AUR62033605' => 'cqu', 'AUR62038615' => 'cqu', 'AUR62041347' => 'cqu', 'BcaB01g04574' => 'bca', 'BcaB02g09263' => 'bca', 'BcaB02g10453' => 'bca', 'BcaB05g22513' => 'bca', 'BcaB08g36253' => 'bca', 'BcaB08g36254' => 'bca', 'BcaC01g06519' => 'bca', 'BcaC02g11889' => 'bca', 'BcaC03g14010' => 'bca', 'BcaC03g18439' => 'bca', 'BcaC04g19765' => 'bca', 'BcaC09g48432' => 'bca', 'BcaNung07302' => 'bca', 'BolC2t06040H' => 'bol', 'BolC2t07346H' => 'bol', 'BolC3t13817H' => 'bol', 'BolC4t22625H' => 'bol', 'BolC4t23297H' => 'bol', 'BolC8t51278H' => 'bol', 'BolC9t58050H' => 'bol', 'BolC9t58051H' => 'bol', 'BolC9t60163H' => 'bol', 'BraA02t04712Z' => 'bra', 'BraA02t05791Z' => 'bra', 'BraA03t10483Z' => 'bra', 'BraA05t19795Z' => 'bra', 'BraA05t20276Z' => 'bra', 'BraA09t40827Z' => 'bra', 'BraA10t43750Z' => 'bra', 'BraA10t43751Z' => 'bra', 'BraA10t45370Z' => 'bra', 'C02p00400' => 'bna', 'C02p12460' => 'bna', 'C03p13680' => 'bna', 'C04p10270' => 'bna', 'C04p17500' => 'bna', 'C08p37010' => 'bna', 'C09p51880' => 'bna', 'C09p51890' => 'bna', 'C09p74300' => 'bna', 'CAN.G179.26' => 'can', 'CAN.G3384.1' => 'can', 'CAN.G394.68' => 'can', 'CAN.G907.13' => 'can', 'CANSAT11G0012' => 'cansat', 'CANSAT25G1586' => 'cansat', 'CANSAT35G0735' => 'cansat', 'CANSAT54G0556' => 'cansat', 'CANSAT64G0356' => 'cansat', 'CANSAT78G2042' => 'cansat', 'CARHR125920' => 'chi', 'CARHR131910' => 'chi', 'CARHR172390' => 'chi', 'CARHR211140' => 'chi', 'CARHR285850' => 'chi', 'CARHR285860' => 'chi', 'Carub.0004s1347' => 'cru', 'Carub.0004s1960' => 'cru', 'Carub.0005s2880' => 'cru', 'Carub.0006s0107' => 'cru', 'Carub.0008s2015' => 'cru', 'Carub.0008s2016' => 'cru', 'Carub.0008s2017' => 'cru', 'Ca_01315_v3' => 'car', 'Ca_05063_v3' => 'car', 'Ca_10231_v3' => 'car', 'Ca_10913_v3' => 'car', 'Ca_19156_v3' => 'car', 'Ca_23644_v3' => 'car', 'Ca_26735_v3' => 'car', 'Cc01_g13130' => 'ccan', 'Cc02_g21690' => 'ccan', 'Cc03_g03600' => 'ccan', 'Cc06_g02510' => 'ccan', 'CDE02G1265' => 'cde', 'CDE05G0415' => 'cde', 'CDE08G1082' => 'cde', 'Cfa005780' => 'cfa', 'Cfa011522' => 'cfa', 'Cfa011523' => 'cfa', 'Cfa015627' => 'cfa', 'Cfa017359' => 'cfa', 'Ciclev10005687m.g' => 'ccl', 'Ciclev10012173m.g' => 'ccl', 'Ciclev10021621m.g' => 'ccl', 'Ciclev10028968m.g' => 'ccl', 'Ciclev10029907m.g' => 'ccl', 'CiPaw.01G164800' => 'cil', 'CiPaw.07G083700' => 'cil', 'CiPaw.07G127000' => 'cil', 'CiPaw.07G136900' => 'cil', 'CiPaw.08G081700' => 'cil', 'CiPaw.09G194600' => 'cil', 'CiPaw.10G146500' => 'cil', 'CiPaw.13G091500' => 'cil', 'CiPaw.13G091600' => 'cil', 'ClCG00G003390' => 'cla', 'ClCG01G007220' => 'cla', 'ClCG03G001370' => 'cla', 'ClCG04G008100' => 'cla', 'ClCG06G006110' => 'cla', 'ClCG06G006130' => 'cla', 'ClCG10G021210' => 'cla', 'COL.COLO4_07648' => 'col', 'COL.COLO4_07650' => 'col', 'COL.COLO4_07651' => 'col', 'COL.COLO4_14780' => 'col', 'COL.COLO4_18546' => 'col', 'COL.COLO4_18547' => 'col', 'COL.COLO4_23103' => 'col', 'COL.COLO4_30419' => 'col', 'COL.COLO4_34232' => 'col', 'Cpa.g.sc169.20' => 'cpa', 'Cpa.g.sc57.45' => 'cpa', 'Cpa.g.sc58.124' => 'cpa', 'Cpa.g.sc58.125' => 'cpa', 'Cpa.g.sc81.118' => 'cpa', 'Cpa.g.sc81.119' => 'cpa', 'Cre12.g524700' => 'cre', 'CsaV3_1G034430' => 'csa', 'CsaV3_1G034440' => 'csa', 'CsaV3_1G034450' => 'csa', 'CsaV3_3G034830' => 'csa', 'CsaV3_4G025090' => 'csa', 'CsaV3_5G018660' => 'csa', 'CsaV3_6G038160' => 'csa', 'CSS0003447' => 'camsi', 'CSS0017840' => 'camsi', 'CSS0019260' => 'camsi', 'CSS0040375' => 'camsi', 'CSS0042533' => 'camsi', 'DCAR_005960' => 'dca', 'DCAR_012104' => 'dca', 'DCAR_012105' => 'dca', 'DCAR_012293' => 'dca', 'DCAR_015632' => 'dca', 'DCAR_024602' => 'dca', 'DCAR_028752' => 'dca', 'Dinv06261' => 'din', 'Dinv13982' => 'din', 'Dinv17029' => 'din', 'Dinv18463' => 'din', 'Dinv33181' => 'din', 'Dinv35585' => 'din', 'Dinv37161' => 'din', 'Dinv42977' => 'din', 'Dinv43122' => 'din', 'Dinv44517' => 'din', 'Duzib093G0256' => 'dzi', 'Duzib106G1254' => 'dzi', 'Duzib128G1789' => 'dzi', 'Duzib133G0633' => 'dzi', 'Duzib138G0510' => 'dzi', 'Duzib150G1084' => 'dzi', 'Duzib168G0488' => 'dzi', 'Duzib168G1523' => 'dzi', 'Duzib170G0133' => 'dzi', 'ECA234G1433' => 'eca', 'ECA236G1432' => 'eca', 'ECA236G2256' => 'eca', 'ECA236G2365' => 'eca', 'ECA236G4830' => 'eca', 'ECA248G1505' => 'eca', 'EL10Ac3g06431' => 'bvu', 'EL10Ac5g12577' => 'bvu', 'EL10Ac6g13533' => 'bvu', 'EL10Ac7g16045' => 'bvu', 'Eucgr.A01281' => 'egr', 'Eucgr.B02326' => 'egr', 'Eucgr.H03532' => 'egr', 'Eucgr.K00553' => 'egr', 'Eucgr.K03116' => 'egr', 'FAN02G3963' => 'fan', 'FAN05G0438' => 'fan', 'FAN09G2434' => 'fan', 'FAN12G3984' => 'fan', 'FAN14G0798' => 'fan', 'FAN17G0652' => 'fan', 'FAN19G1988' => 'fan', 'FAN22G0632' => 'fan', 'FAN23G0387' => 'fan', 'FAN26G1323' => 'fan', 'FAN28G0666' => 'fan', 'FvH4_1g26080' => 'fve', 'FvH4_3g36780' => 'fve', 'FvH4_4g15270' => 'fve', 'FvH4_6g13490' => 'fve', 'Glyma.01G098700' => 'gma', 'Glyma.03G065900' => 'gma', 'Glyma.03G073754' => 'gma', 'Glyma.03G073758' => 'gma', 'Glyma.03G083200' => 'gma', 'Glyma.03G225500' => 'gma', 'Glyma.05G037766' => 'gma', 'Glyma.07G133500' => 'gma', 'Glyma.10G139400' => 'gma', 'Glyma.10G248900' => 'gma', 'Glyma.11G137800' => 'gma', 'Glyma.12G061300' => 'gma', 'Glyma.13G337900' => 'gma', 'Glyma.15G036600' => 'gma', 'Glyma.18G182800' => 'gma', 'Glyma.19G222500' => 'gma', 'Glyma.20G144800' => 'gma', 'Gohir.A01G222000' => 'ghi', 'Gohir.A03G044000' => 'ghi', 'Gohir.A03G044100' => 'ghi', 'Gohir.A04G083100' => 'ghi', 'Gohir.A07G127200' => 'ghi', 'Gohir.A07G132400' => 'ghi', 'Gohir.A08G000700' => 'ghi', 'Gohir.A11G327300' => 'ghi', 'Gohir.D01G211500' => 'ghi', 'Gohir.D03G123400' => 'ghi', 'Gohir.D03G123500' => 'ghi', 'Gohir.D04G121800' => 'ghi', 'Gohir.D07G131500' => 'ghi', 'Gohir.D07G136600' => 'ghi', 'Gohir.D08G011600' => 'ghi', 'Gohir.D11G346200' => 'ghi', 'Gorai.001G142800' => 'gra', 'Gorai.001G148700' => 'gra', 'Gorai.002G257300' => 'gra', 'Gorai.003G130000' => 'gra', 'Gorai.003G130100' => 'gra', 'Gorai.004G005300' => 'gra', 'Gorai.007G376500' => 'gra', 'Gorai.012G104700' => 'gra', 'GSVIVG01017946001' => 'vvi', 'GSVIVG01024928001' => 'vvi', 'GSVIVG01028227001' => 'vvi', 'GSVIVG01034151001' => 'vvi', 'HanXRQChr05g0135031' => 'han', 'HanXRQChr05g0135041' => 'han', 'HanXRQChr05g0140021' => 'han', 'HanXRQChr06g0178981' => 'han', 'HanXRQChr07g0188251' => 'han', 'HanXRQChr08g0235311' => 'han', 'HanXRQChr09g0271011' => 'han', 'HanXRQChr10g0293321' => 'han', 'HanXRQChr13g0388171' => 'han', 'Haze_00916' => 'cav', 'Haze_05063' => 'cav', 'Haze_20814' => 'cav', 'Haze_24128' => 'cav', 'Hma1.2p1_0745F.1_g212010' => 'hma', 'Hma1.2p1_0757F.1_g213260' => 'hma', 'Hma1.2p1_0936F.1_g238840' => 'hma', 'Hma1.2p1_1735F.1_g299890' => 'hma', 'Hma1.2p1_1861F.1_g305685' => 'hma', 'HPP92_003397' => 'vpl', 'HPP92_012597' => 'vpl', 'HPP92_015520' => 'vpl', 'HPP92_015539' => 'vpl', 'HPP92_020373' => 'vpl', 'Hund04938' => 'sun', 'Hund10677' => 'sun', 'Hund11033' => 'sun', 'Hund12155' => 'sun', 'Lalb_Chr01g0022551' => 'lal', 'Lalb_Chr03g0042341' => 'lal', 'Lalb_Chr07g0192931' => 'lal', 'Lalb_Chr12g0209551' => 'lal', 'Lalb_Chr19g0125251' => 'lal', 'Lalb_Chr19g0137891' => 'lal', 'Lalb_Chr21g0304641' => 'lal', 'Lalb_Chr21g0309881' => 'lal', 'Lj1A5T12' => 'lonja', 'Lj1C148G10' => 'lonja', 'Lj2A93T83' => 'lonja', 'Lj3A738G68' => 'lonja', 'Lj3C966T1' => 'lonja', 'Lj3g0018958' => 'lja', 'Lj3g0021831' => 'lja', 'Lj3g0025443' => 'lja', 'Lj4g0026809' => 'lja', 'Lj5g0012558' => 'lja', 'Lj5g0021586' => 'lja', 'Lsat_1_v5_gn_5_156840' => 'lsa', 'Lsat_1_v5_gn_8_73460' => 'lsa', 'Lsat_1_v5_gn_8_73481' => 'lsa', 'Lsat_1_v5_gn_9_31601' => 'lsa', 'Lsat_1_v5_gn_9_77320' => 'lsa', 'Manes.01G171300' => 'mes', 'Manes.01G171400' => 'mes', 'Manes.01G236100' => 'mes', 'Manes.02G130500' => 'mes', 'Manes.02G130600' => 'mes', 'Manes.03G180200' => 'mes', 'Manes.05G007000' => 'mes', 'Manes.08G084400' => 'mes', 'Manes.09G092600' => 'mes', 'Manes.15G027900' => 'mes', 'MBI04_g40948_MAGBIO' => 'mbi', 'MBI14_g12123_MAGBIO' => 'mbi', 'MBI18_g28915_MAGBIO' => 'mbi', 'MCO09G053' => 'mco', 'MCO11G782' => 'mco', 'MCO15G215' => 'mco', 'MD03G1088500' => 'mdo', 'MD03G1088600' => 'mdo', 'MD04G1130800' => 'mdo', 'MD09G1291700' => 'mdo', 'MD11G1097500' => 'mdo', 'MD11G1097600' => 'mdo', 'MD12G1143900' => 'mdo', 'MD13G1191400' => 'mdo', 'MD16G1191500' => 'mdo', 'Medtr1g085570' => 'mtr', 'Medtr1g104610' => 'mtr', 'Medtr2g097520' => 'mtr', 'Medtr4g021800' => 'mtr', 'Medtr4g021825' => 'mtr', 'Medtr4g064270' => 'mtr', 'Medtr4g064380' => 'mtr', 'Medtr7g062150' => 'mtr', 'MELO3C003138.2' => 'cme', 'MELO3C005187.2' => 'cme', 'MELO3C009252.2' => 'cme', 'MELO3C014481.2' => 'cme', 'MELO3C020616.2' => 'cme', 'MELO3C020617.2' => 'cme', 'MELO3C020618.2' => 'cme', 'Migut.G00328' => 'egut', 'Migut.J00320' => 'egut', 'Migut.L01000' => 'egut', 'Migut.L01953' => 'egut', 'MSTRG.10253' => 'ama', 'MSTRG.19077' => 'ama', 'MSTRG.26780' => 'ama', 'MSTRG.4023' => 'ama', 'MSTRG.5655' => 'ama', 'MSTRG.9992' => 'ama', 'Nitab4.5_0000043g0310' => 'nta', 'Nitab4.5_0000463g0080' => 'nta', 'Nitab4.5_0000705g0170' => 'nta', 'Nitab4.5_0001326g0060' => 'nta', 'Nitab4.5_0001628g0030' => 'nta', 'Nitab4.5_0002103g0110' => 'nta', 'Nitab4.5_0002946g0030' => 'nta', 'Nitab4.5_0004639g0030' => 'nta', 'Nn2g11149' => 'nnu', 'Nn2g13389' => 'nnu', 'Nn4g25326' => 'nnu', 'Nn4g26290' => 'nnu', 'Nn5g29865' => 'nnu', 'Oeu004163.1' => 'oeu', 'Oeu006901.1' => 'oeu', 'Oeu010096.1' => 'oeu', 'Oeu024340.1' => 'oeu', 'Oeu048369.1' => 'oeu', 'Os01g0973000' => 'osa', 'Os03g0273800' => 'osa', 'Os03g0701200' => 'osa', 'Os03g0834050' => 'osa', 'Os07g0634400' => 'osa', 'Peaxi162Scf00092g01414' => 'pax', 'Peaxi162Scf00165g00818' => 'pax', 'Peaxi162Scf00309g00516' => 'pax', 'Peaxi162Scf00774g00218' => 'pax', 'PGR004G1824' => 'pgr', 'PGR004G2606' => 'pgr', 'PGR031G2716' => 'pgr', 'PGR102G2460' => 'pgr', 'PGR142G2599' => 'pgr', 'PGSC0003DMG400000843' => 'stu', 'PGSC0003DMG400008829' => 'stu', 'PGSC0003DMG400030418' => 'stu', 'PGSC0003DMG400031834' => 'stu', 'PGSC0003DMG401028300' => 'stu', 'PGSC0003DMG402028300' => 'stu', 'Phvul.001G219300' => 'pvu', 'Phvul.007G056000' => 'pvu', 'Phvul.007G208000' => 'pvu', 'Phvul.008G119500' => 'pvu', 'Phvul.010G011200' => 'pvu', 'Phvul.010G014800' => 'pvu', 'Phvul.011G062900' => 'pvu', 'Phvul.L007043' => 'pvu', 'Potri.001G242300' => 'ptr', 'Potri.002G185300' => 'ptr', 'Potri.006G086900' => 'ptr', 'Potri.008G151700' => 'ptr', 'Potri.009G033500' => 'ptr', 'Potri.010G089300' => 'ptr', 'Potri.014G110800' => 'ptr', 'Pp3c27_8130' => 'ppa', 'Pp3c6_27410' => 'ppa', 'PRCOL_00001659' => 'pco', 'PRCOL_00001927' => 'pco', 'PRCOL_00003649' => 'pco', 'Prupe.1G011600' => 'ppe', 'Prupe.3G000800' => 'ppe', 'Prupe.3G001100' => 'ppe', 'Prupe.6G072700' => 'ppe', 'Prupe.6G072800' => 'ppe', 'Prupe.6G257300' => 'ppe', 'Prupe.8G033000' => 'ppe', 'Psat0s2633g0080' => 'psa', 'Psat0s3396g0080' => 'psa', 'Psat0s3396g0200' => 'psa', 'Psat3g139080' => 'psa', 'Psat5g285080' => 'psa', 'Psat6g157760' => 'psa', 'Psat6g208440' => 'psa', 'Psat7g215320' => 'psa', 'Psat7g215400' => 'psa', 'Psat7g235600' => 'psa', 'Psat7g235760' => 'psa', 'PSO063G4603' => 'pso', 'PSO210G0182' => 'pso', 'PSO210G0196' => 'pso', 'PSO339G0394' => 'pso', 'PSO339G4127' => 'pso', 'PSO513G0064' => 'pso', 'PSO761G0079' => 'pso', 'QL01p031003' => 'qlo', 'QL01p031078' => 'qlo', 'QL06p003004' => 'qlo', 'QL07p048731' => 'qlo', 'QL09p037427' => 'qlo', 'RcHm_v2.0_Chr3g0466361' => 'rch', 'RcHm_v2.0_Chr3g0485571' => 'rch', 'RcHm_v2.0_Chr4g0416551' => 'rch', 'RcHm_v2.0_Chr5g0065831' => 'rch', 'Rhsim01G0230500' => 'rsi', 'Rhsim05G0194000' => 'rsi', 'Rhsim08G0250400' => 'rsi', 'Sabra02G0131000' => 'sbr', 'Sabra06G0066300' => 'sbr', 'Sabra08G0115500' => 'sbr', 'Sabra09G0023900' => 'sbr', 'Sabra10G0054000' => 'sbr', 'Sabra14G0081500' => 'sbr', 'Sabra16G0147100' => 'sbr', 'SalBow2G2957' => 'sbo', 'SalBow4G3320' => 'sbo', 'SalBow8G1894' => 'sbo', 'Sc07g0007950' => 'sci', 'Sc12g0001360' => 'sci', 'Sc13g0004330' => 'sci', 'Sc20g0005010' => 'sci', 'Sed0000361' => 'sed', 'Sed0001706' => 'sed', 'Sed0002422' => 'sed', 'Sed0004029' => 'sed', 'Sed0004602' => 'sed', 'Sed0004943' => 'sed', 'Sed0008646' => 'sed', 'Sed0023313' => 'sed', 'Sed0024843' => 'sed', 'SEGI_00081' => 'sgi', 'SEGI_00947' => 'sgi', 'SEGI_04046' => 'sgi', 'SEGI_06880' => 'sgi', 'SEGI_09736' => 'sgi', 'SEGI_12741' => 'sgi', 'SEGI_14530' => 'sgi', 'SEGI_20705' => 'sgi', 'SEGI_26088' => 'sgi', 'SEGI_28323' => 'sgi', 'SEGI_33343' => 'sgi', 'SGA_v2.0_scaffold126G33775' => 'sas', 'SGA_v2.0_scaffold2G01337' => 'sas', 'SGA_v2.0_scaffold38G15006' => 'sas', 'SGA_v2.0_scaffold39G15264' => 'sas', 'SGA_v2.0_scaffold453G51880' => 'sas', 'SHI12696' => 'shi', 'SMO367G1096' => 'smo', 'Solyc01g068630.3' => 'sly', 'Solyc05g011880.3' => 'sly', 'Solyc06g076300.3' => 'sly', 'Solyc09g010940.4' => 'sly', 'Solyc09g075890.3' => 'sly', 'Sopen01g030560' => 'spe', 'Sopen05g006630' => 'spe', 'Sopen06g032720' => 'spe', 'Sopen09g005660' => 'spe', 'Sopen09g030690' => 'spe', 'Sp4g14540' => 'spa', 'Sp4g20030' => 'spa', 'Sp5g01320' => 'spa', 'Sp6g21170' => 'spa', 'Sp6g21180' => 'spa', 'Sp6g21190' => 'spa', 'Sp6g40220' => 'spa', 'TAR362G0122' => 'tar', 'TAR362G1338' => 'tar', 'TAR369G0590' => 'tar', 'TAR371G0824' => 'tar', 'TAR622G1429' => 'tar', 'TAR623G0734' => 'tar', 'TAR625G0441' => 'tar', 'TAR629G0976' => 'tar', 'TAR633G1195' => 'tar', 'TAR636G2660' => 'tar', 'THA.LOC104799440' => 'tha', 'THA.LOC104800966' => 'tha', 'THA.LOC104806559' => 'tha', 'THA.LOC104810765' => 'tha', 'THA.LOC104816266' => 'tha', 'THA.LOC104817419' => 'tha', 'THA.LOC104827021' => 'tha', 'Thecc.01G327400' => 'tca', 'Thecc.04G229200' => 'tca', 'Thecc.05G037400' => 'tca', 'Thecc.09G318600' => 'tca', 'Thecc.09G318700' => 'tca', 'Thhalv10006238m.g' => 'esa', 'Thhalv10014321m.g' => 'esa', 'Thhalv10014335m.g' => 'esa', 'Thhalv10015826m.g' => 'esa', 'Thhalv10017107m.g' => 'esa', 'Thhalv10017180m.g' => 'esa', 'Thhalv10029339m.g' => 'esa', 'TPR.G1699' => 'tpr', 'TPR.G23609' => 'tpr', 'TPR.G3081' => 'tpr', 'TPR.G40397' => 'tpr', 'TPR.G5522' => 'tpr', 'TPR.G5618' => 'tpr', 'TPR.G5626' => 'tpr', 'TWI09G1632' => 'twi', 'TWI23G1230' => 'twi', 'TWI53G1064' => 'twi', 'TWI59G0751' => 'twi', 'TWI74G0947' => 'twi', 'TWI77G0337' => 'twi', 'TWI79G1254' => 'twi', 'unitig_0.g2341' => 'ugi', 'unitig_26.g10006' => 'ugi', 'unitig_26.g10008' => 'ugi', 'unitig_26.g9192' => 'ugi', 'vmacro14547' => 'vma', 'vmacro15333' => 'vma', 'vmacro18743' => 'vma', 'vmacro20166' => 'vma', 'VMungo0331G0523' => 'vmu', 'VMungo0331G1202' => 'vmu', 'VMungo0720G1228' => 'vmu', 'VMungo0720G1514' => 'vmu', 'VMungo1080G0169' => 'vmu', 'VMungo1127G1475' => 'vmu', 'VMungo1383G1208' => 'vmu', 'VMungo1383G1698' => 'vmu', 'Zm00001eb012270' => 'zma', 'Zm00001eb054100' => 'zma', 'Zm00001eb063350' => 'zma', 'Zm00001eb328560' => 'zma', 'Zm00001eb342820' => 'zma', 'Zm00001eb362210' => 'zma', 'Zm00001eb397730' => 'zma', 'Zm00001eb399750' => 'zma' ), 'gf_id' => 'HOM05D000959', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000959' ), 'data_identifier' => 'HOM05D000959', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000959', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '622', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p07100' => 'bna', 'A03p11720' => 'bna', 'A05p08300' => 'bna', 'A05p13380' => 'bna', 'A09p54130' => 'bna', 'A10p16690' => 'bna', 'A10p16700' => 'bna', 'A10p33390' => 'bna', 'Aa31LG10G16020' => 'aar', 'Aa31LG1G11810' => 'aar', 'Aa31LG1G11830' => 'aar', 'Aa31LG1G22510' => 'aar', 'Aa31LG5G4890' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5793' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2310' => 'aag', 'Actinidia08499' => 'ach', 'Actinidia11262' => 'ach', 'Actinidia23926' => 'ach', 'Actinidia34420' => 'ach', 'Actinidia36970' => 'ach', 'Ah.02g111220' => 'amhyb', 'Ah.15g097750' => 'amhyb', 'AL4G27500' => 'aly', 'AL6G11470' => 'aly', 'AL8G35950' => 'aly', 'AL8G35960' => 'aly', 'AL8G35970' => 'aly', 'Aqoxy1G00912' => 'aox', 'Aqoxy2G02253' => 'aox', 'Aqoxy2G02411' => 'aox', 'Aqoxy5G00485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BZ66YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K8ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM4FUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6BF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HFV7XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25JBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0YNNV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MAKK6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P70IT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP2Z6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V61LZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YWP64R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3S9AI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7PGHH' => 'arhy', 'AT2G32150' => 'ath', 'AT3G62040' => 'ath', 'AT5G02230' => 'ath', 'AT5G59480' => 'ath', 'AT5G59490' => 'ath', 'ATR0332G060' => 'atr', 'ATR0559G190' => 'atr', 'ATR0693G294' => 'atr', 'Atru.chr3.3975' => 'acertr', 'Atru.chr3.3976' => 'acertr', 'Atru.chr3.3977' => 'acertr', 'Atru.chr4.2498' => 'acertr', 'Atru.chr5.838' => 'acertr', 'Atru.chr8.1990' => 'acertr', 'Atru.chr8.1991' => 'acertr', 'Atru.chr8.1992' => 'acertr', 'AUR62001759' => 'cqu', 'AUR62009545' => 'cqu', 'AUR62010474' => 'cqu', 'AUR62025820' => 'cqu', 'AUR62030422' => 'cqu', 'AUR62033605' => 'cqu', 'AUR62038615' => 'cqu', 'AUR62041347' => 'cqu', 'BcaB01g04574' => 'bca', 'BcaB02g09263' => 'bca', 'BcaB02g10453' => 'bca', 'BcaB05g22513' => 'bca', 'BcaB08g36253' => 'bca', 'BcaB08g36254' => 'bca', 'BcaC01g06519' => 'bca', 'BcaC02g11889' => 'bca', 'BcaC03g14010' => 'bca', 'BcaC03g18439' => 'bca', 'BcaC04g19765' => 'bca', 'BcaC09g48432' => 'bca', 'BcaNung07302' => 'bca', 'BolC2t06040H' => 'bol', 'BolC2t07346H' => 'bol', 'BolC3t13817H' => 'bol', 'BolC4t22625H' => 'bol', 'BolC4t23297H' => 'bol', 'BolC8t51278H' => 'bol', 'BolC9t58050H' => 'bol', 'BolC9t58051H' => 'bol', 'BolC9t60163H' => 'bol', 'BraA02t04712Z' => 'bra', 'BraA02t05791Z' => 'bra', 'BraA03t10483Z' => 'bra', 'BraA05t19795Z' => 'bra', 'BraA05t20276Z' => 'bra', 'BraA09t40827Z' => 'bra', 'BraA10t43750Z' => 'bra', 'BraA10t43751Z' => 'bra', 'BraA10t45370Z' => 'bra', 'C02p00400' => 'bna', 'C02p12460' => 'bna', 'C03p13680' => 'bna', 'C04p10270' => 'bna', 'C04p17500' => 'bna', 'C08p37010' => 'bna', 'C09p51880' => 'bna', 'C09p51890' => 'bna', 'C09p74300' => 'bna', 'CAN.G179.26' => 'can', 'CAN.G3384.1' => 'can', 'CAN.G394.68' => 'can', 'CAN.G907.13' => 'can', 'CANSAT11G0012' => 'cansat', 'CANSAT25G1586' => 'cansat', 'CANSAT35G0735' => 'cansat', 'CANSAT54G0556' => 'cansat', 'CANSAT64G0356' => 'cansat', 'CANSAT78G2042' => 'cansat', 'CARHR125920' => 'chi', 'CARHR131910' => 'chi', 'CARHR172390' => 'chi', 'CARHR211140' => 'chi', 'CARHR285850' => 'chi', 'CARHR285860' => 'chi', 'Carub.0004s1347' => 'cru', 'Carub.0004s1960' => 'cru', 'Carub.0005s2880' => 'cru', 'Carub.0006s0107' => 'cru', 'Carub.0008s2015' => 'cru', 'Carub.0008s2016' => 'cru', 'Carub.0008s2017' => 'cru', 'Ca_01315_v3' => 'car', 'Ca_05063_v3' => 'car', 'Ca_10231_v3' => 'car', 'Ca_10913_v3' => 'car', 'Ca_19156_v3' => 'car', 'Ca_23644_v3' => 'car', 'Ca_26735_v3' => 'car', 'Cc01_g13130' => 'ccan', 'Cc02_g21690' => 'ccan', 'Cc03_g03600' => 'ccan', 'Cc06_g02510' => 'ccan', 'CDE02G1265' => 'cde', 'CDE05G0415' => 'cde', 'CDE08G1082' => 'cde', 'Cfa005780' => 'cfa', 'Cfa011522' => 'cfa', 'Cfa011523' => 'cfa', 'Cfa015627' => 'cfa', 'Cfa017359' => 'cfa', 'Ciclev10005687m.g' => 'ccl', 'Ciclev10012173m.g' => 'ccl', 'Ciclev10021621m.g' => 'ccl', 'Ciclev10028968m.g' => 'ccl', 'Ciclev10029907m.g' => 'ccl', 'CiPaw.01G164800' => 'cil', 'CiPaw.07G083700' => 'cil', 'CiPaw.07G127000' => 'cil', 'CiPaw.07G136900' => 'cil', 'CiPaw.08G081700' => 'cil', 'CiPaw.09G194600' => 'cil', 'CiPaw.10G146500' => 'cil', 'CiPaw.13G091500' => 'cil', 'CiPaw.13G091600' => 'cil', 'ClCG00G003390' => 'cla', 'ClCG01G007220' => 'cla', 'ClCG03G001370' => 'cla', 'ClCG04G008100' => 'cla', 'ClCG06G006110' => 'cla', 'ClCG06G006130' => 'cla', 'ClCG10G021210' => 'cla', 'COL.COLO4_07648' => 'col', 'COL.COLO4_07650' => 'col', 'COL.COLO4_07651' => 'col', 'COL.COLO4_14780' => 'col', 'COL.COLO4_18546' => 'col', 'COL.COLO4_18547' => 'col', 'COL.COLO4_23103' => 'col', 'COL.COLO4_30419' => 'col', 'COL.COLO4_34232' => 'col', 'Cpa.g.sc169.20' => 'cpa', 'Cpa.g.sc57.45' => 'cpa', 'Cpa.g.sc58.124' => 'cpa', 'Cpa.g.sc58.125' => 'cpa', 'Cpa.g.sc81.118' => 'cpa', 'Cpa.g.sc81.119' => 'cpa', 'Cre12.g524700' => 'cre', 'CsaV3_1G034430' => 'csa', 'CsaV3_1G034440' => 'csa', 'CsaV3_1G034450' => 'csa', 'CsaV3_3G034830' => 'csa', 'CsaV3_4G025090' => 'csa', 'CsaV3_5G018660' => 'csa', 'CsaV3_6G038160' => 'csa', 'CSS0003447' => 'camsi', 'CSS0017840' => 'camsi', 'CSS0019260' => 'camsi', 'CSS0040375' => 'camsi', 'CSS0042533' => 'camsi', 'DCAR_005960' => 'dca', 'DCAR_012104' => 'dca', 'DCAR_012105' => 'dca', 'DCAR_012293' => 'dca', 'DCAR_015632' => 'dca', 'DCAR_024602' => 'dca', 'DCAR_028752' => 'dca', 'Dinv06261' => 'din', 'Dinv13982' => 'din', 'Dinv17029' => 'din', 'Dinv18463' => 'din', 'Dinv33181' => 'din', 'Dinv35585' => 'din', 'Dinv37161' => 'din', 'Dinv42977' => 'din', 'Dinv43122' => 'din', 'Dinv44517' => 'din', 'Duzib093G0256' => 'dzi', 'Duzib106G1254' => 'dzi', 'Duzib128G1789' => 'dzi', 'Duzib133G0633' => 'dzi', 'Duzib138G0510' => 'dzi', 'Duzib150G1084' => 'dzi', 'Duzib168G0488' => 'dzi', 'Duzib168G1523' => 'dzi', 'Duzib170G0133' => 'dzi', 'ECA234G1433' => 'eca', 'ECA236G1432' => 'eca', 'ECA236G2256' => 'eca', 'ECA236G2365' => 'eca', 'ECA236G4830' => 'eca', 'ECA248G1505' => 'eca', 'EL10Ac3g06431' => 'bvu', 'EL10Ac5g12577' => 'bvu', 'EL10Ac6g13533' => 'bvu', 'EL10Ac7g16045' => 'bvu', 'Eucgr.A01281' => 'egr', 'Eucgr.B02326' => 'egr', 'Eucgr.H03532' => 'egr', 'Eucgr.K00553' => 'egr', 'Eucgr.K03116' => 'egr', 'FAN02G3963' => 'fan', 'FAN05G0438' => 'fan', 'FAN09G2434' => 'fan', 'FAN12G3984' => 'fan', 'FAN14G0798' => 'fan', 'FAN17G0652' => 'fan', 'FAN19G1988' => 'fan', 'FAN22G0632' => 'fan', 'FAN23G0387' => 'fan', 'FAN26G1323' => 'fan', 'FAN28G0666' => 'fan', 'FvH4_1g26080' => 'fve', 'FvH4_3g36780' => 'fve', 'FvH4_4g15270' => 'fve', 'FvH4_6g13490' => 'fve', 'Glyma.01G098700' => 'gma', 'Glyma.03G065900' => 'gma', 'Glyma.03G073754' => 'gma', 'Glyma.03G073758' => 'gma', 'Glyma.03G083200' => 'gma', 'Glyma.03G225500' => 'gma', 'Glyma.05G037766' => 'gma', 'Glyma.07G133500' => 'gma', 'Glyma.10G139400' => 'gma', 'Glyma.10G248900' => 'gma', 'Glyma.11G137800' => 'gma', 'Glyma.12G061300' => 'gma', 'Glyma.13G337900' => 'gma', 'Glyma.15G036600' => 'gma', 'Glyma.18G182800' => 'gma', 'Glyma.19G222500' => 'gma', 'Glyma.20G144800' => 'gma', 'Gohir.A01G222000' => 'ghi', 'Gohir.A03G044000' => 'ghi', 'Gohir.A03G044100' => 'ghi', 'Gohir.A04G083100' => 'ghi', 'Gohir.A07G127200' => 'ghi', 'Gohir.A07G132400' => 'ghi', 'Gohir.A08G000700' => 'ghi', 'Gohir.A11G327300' => 'ghi', 'Gohir.D01G211500' => 'ghi', 'Gohir.D03G123400' => 'ghi', 'Gohir.D03G123500' => 'ghi', 'Gohir.D04G121800' => 'ghi', 'Gohir.D07G131500' => 'ghi', 'Gohir.D07G136600' => 'ghi', 'Gohir.D08G011600' => 'ghi', 'Gohir.D11G346200' => 'ghi', 'Gorai.001G142800' => 'gra', 'Gorai.001G148700' => 'gra', 'Gorai.002G257300' => 'gra', 'Gorai.003G130000' => 'gra', 'Gorai.003G130100' => 'gra', 'Gorai.004G005300' => 'gra', 'Gorai.007G376500' => 'gra', 'Gorai.012G104700' => 'gra', 'GSVIVG01017946001' => 'vvi', 'GSVIVG01024928001' => 'vvi', 'GSVIVG01028227001' => 'vvi', 'GSVIVG01034151001' => 'vvi', 'HanXRQChr05g0135031' => 'han', 'HanXRQChr05g0135041' => 'han', 'HanXRQChr05g0140021' => 'han', 'HanXRQChr06g0178981' => 'han', 'HanXRQChr07g0188251' => 'han', 'HanXRQChr08g0235311' => 'han', 'HanXRQChr09g0271011' => 'han', 'HanXRQChr10g0293321' => 'han', 'HanXRQChr13g0388171' => 'han', 'Haze_00916' => 'cav', 'Haze_05063' => 'cav', 'Haze_20814' => 'cav', 'Haze_24128' => 'cav', 'Hma1.2p1_0745F.1_g212010' => 'hma', 'Hma1.2p1_0757F.1_g213260' => 'hma', 'Hma1.2p1_0936F.1_g238840' => 'hma', 'Hma1.2p1_1735F.1_g299890' => 'hma', 'Hma1.2p1_1861F.1_g305685' => 'hma', 'HPP92_003397' => 'vpl', 'HPP92_012597' => 'vpl', 'HPP92_015520' => 'vpl', 'HPP92_015539' => 'vpl', 'HPP92_020373' => 'vpl', 'Hund04938' => 'sun', 'Hund10677' => 'sun', 'Hund11033' => 'sun', 'Hund12155' => 'sun', 'Lalb_Chr01g0022551' => 'lal', 'Lalb_Chr03g0042341' => 'lal', 'Lalb_Chr07g0192931' => 'lal', 'Lalb_Chr12g0209551' => 'lal', 'Lalb_Chr19g0125251' => 'lal', 'Lalb_Chr19g0137891' => 'lal', 'Lalb_Chr21g0304641' => 'lal', 'Lalb_Chr21g0309881' => 'lal', 'Lj1A5T12' => 'lonja', 'Lj1C148G10' => 'lonja', 'Lj2A93T83' => 'lonja', 'Lj3A738G68' => 'lonja', 'Lj3C966T1' => 'lonja', 'Lj3g0018958' => 'lja', 'Lj3g0021831' => 'lja', 'Lj3g0025443' => 'lja', 'Lj4g0026809' => 'lja', 'Lj5g0012558' => 'lja', 'Lj5g0021586' => 'lja', 'Lsat_1_v5_gn_5_156840' => 'lsa', 'Lsat_1_v5_gn_8_73460' => 'lsa', 'Lsat_1_v5_gn_8_73481' => 'lsa', 'Lsat_1_v5_gn_9_31601' => 'lsa', 'Lsat_1_v5_gn_9_77320' => 'lsa', 'Manes.01G171300' => 'mes', 'Manes.01G171400' => 'mes', 'Manes.01G236100' => 'mes', 'Manes.02G130500' => 'mes', 'Manes.02G130600' => 'mes', 'Manes.03G180200' => 'mes', 'Manes.05G007000' => 'mes', 'Manes.08G084400' => 'mes', 'Manes.09G092600' => 'mes', 'Manes.15G027900' => 'mes', 'MBI04_g40948_MAGBIO' => 'mbi', 'MBI14_g12123_MAGBIO' => 'mbi', 'MBI18_g28915_MAGBIO' => 'mbi', 'MCO09G053' => 'mco', 'MCO11G782' => 'mco', 'MCO15G215' => 'mco', 'MD03G1088500' => 'mdo', 'MD03G1088600' => 'mdo', 'MD04G1130800' => 'mdo', 'MD09G1291700' => 'mdo', 'MD11G1097500' => 'mdo', 'MD11G1097600' => 'mdo', 'MD12G1143900' => 'mdo', 'MD13G1191400' => 'mdo', 'MD16G1191500' => 'mdo', 'Medtr1g085570' => 'mtr', 'Medtr1g104610' => 'mtr', 'Medtr2g097520' => 'mtr', 'Medtr4g021800' => 'mtr', 'Medtr4g021825' => 'mtr', 'Medtr4g064270' => 'mtr', 'Medtr4g064380' => 'mtr', 'Medtr7g062150' => 'mtr', 'MELO3C003138.2' => 'cme', 'MELO3C005187.2' => 'cme', 'MELO3C009252.2' => 'cme', 'MELO3C014481.2' => 'cme', 'MELO3C020616.2' => 'cme', 'MELO3C020617.2' => 'cme', 'MELO3C020618.2' => 'cme', 'Migut.G00328' => 'egut', 'Migut.J00320' => 'egut', 'Migut.L01000' => 'egut', 'Migut.L01953' => 'egut', 'MSTRG.10253' => 'ama', 'MSTRG.19077' => 'ama', 'MSTRG.26780' => 'ama', 'MSTRG.4023' => 'ama', 'MSTRG.5655' => 'ama', 'MSTRG.9992' => 'ama', 'Nitab4.5_0000043g0310' => 'nta', 'Nitab4.5_0000463g0080' => 'nta', 'Nitab4.5_0000705g0170' => 'nta', 'Nitab4.5_0001326g0060' => 'nta', 'Nitab4.5_0001628g0030' => 'nta', 'Nitab4.5_0002103g0110' => 'nta', 'Nitab4.5_0002946g0030' => 'nta', 'Nitab4.5_0004639g0030' => 'nta', 'Nn2g11149' => 'nnu', 'Nn2g13389' => 'nnu', 'Nn4g25326' => 'nnu', 'Nn4g26290' => 'nnu', 'Nn5g29865' => 'nnu', 'Oeu004163.1' => 'oeu', 'Oeu006901.1' => 'oeu', 'Oeu010096.1' => 'oeu', 'Oeu024340.1' => 'oeu', 'Oeu048369.1' => 'oeu', 'Os01g0973000' => 'osa', 'Os03g0273800' => 'osa', 'Os03g0701200' => 'osa', 'Os03g0834050' => 'osa', 'Os07g0634400' => 'osa', 'Peaxi162Scf00092g01414' => 'pax', 'Peaxi162Scf00165g00818' => 'pax', 'Peaxi162Scf00309g00516' => 'pax', 'Peaxi162Scf00774g00218' => 'pax', 'PGR004G1824' => 'pgr', 'PGR004G2606' => 'pgr', 'PGR031G2716' => 'pgr', 'PGR102G2460' => 'pgr', 'PGR142G2599' => 'pgr', 'PGSC0003DMG400000843' => 'stu', 'PGSC0003DMG400008829' => 'stu', 'PGSC0003DMG400030418' => 'stu', 'PGSC0003DMG400031834' => 'stu', 'PGSC0003DMG401028300' => 'stu', 'PGSC0003DMG402028300' => 'stu', 'Phvul.001G219300' => 'pvu', 'Phvul.007G056000' => 'pvu', 'Phvul.007G208000' => 'pvu', 'Phvul.008G119500' => 'pvu', 'Phvul.010G011200' => 'pvu', 'Phvul.010G014800' => 'pvu', 'Phvul.011G062900' => 'pvu', 'Phvul.L007043' => 'pvu', 'Potri.001G242300' => 'ptr', 'Potri.002G185300' => 'ptr', 'Potri.006G086900' => 'ptr', 'Potri.008G151700' => 'ptr', 'Potri.009G033500' => 'ptr', 'Potri.010G089300' => 'ptr', 'Potri.014G110800' => 'ptr', 'Pp3c27_8130' => 'ppa', 'Pp3c6_27410' => 'ppa', 'PRCOL_00001659' => 'pco', 'PRCOL_00001927' => 'pco', 'PRCOL_00003649' => 'pco', 'Prupe.1G011600' => 'ppe', 'Prupe.3G000800' => 'ppe', 'Prupe.3G001100' => 'ppe', 'Prupe.6G072700' => 'ppe', 'Prupe.6G072800' => 'ppe', 'Prupe.6G257300' => 'ppe', 'Prupe.8G033000' => 'ppe', 'Psat0s2633g0080' => 'psa', 'Psat0s3396g0080' => 'psa', 'Psat0s3396g0200' => 'psa', 'Psat3g139080' => 'psa', 'Psat5g285080' => 'psa', 'Psat6g157760' => 'psa', 'Psat6g208440' => 'psa', 'Psat7g215320' => 'psa', 'Psat7g215400' => 'psa', 'Psat7g235600' => 'psa', 'Psat7g235760' => 'psa', 'PSO063G4603' => 'pso', 'PSO210G0182' => 'pso', 'PSO210G0196' => 'pso', 'PSO339G0394' => 'pso', 'PSO339G4127' => 'pso', 'PSO513G0064' => 'pso', 'PSO761G0079' => 'pso', 'QL01p031003' => 'qlo', 'QL01p031078' => 'qlo', 'QL06p003004' => 'qlo', 'QL07p048731' => 'qlo', 'QL09p037427' => 'qlo', 'RcHm_v2.0_Chr3g0466361' => 'rch', 'RcHm_v2.0_Chr3g0485571' => 'rch', 'RcHm_v2.0_Chr4g0416551' => 'rch', 'RcHm_v2.0_Chr5g0065831' => 'rch', 'Rhsim01G0230500' => 'rsi', 'Rhsim05G0194000' => 'rsi', 'Rhsim08G0250400' => 'rsi', 'Sabra02G0131000' => 'sbr', 'Sabra06G0066300' => 'sbr', 'Sabra08G0115500' => 'sbr', 'Sabra09G0023900' => 'sbr', 'Sabra10G0054000' => 'sbr', 'Sabra14G0081500' => 'sbr', 'Sabra16G0147100' => 'sbr', 'SalBow2G2957' => 'sbo', 'SalBow4G3320' => 'sbo', 'SalBow8G1894' => 'sbo', 'Sc07g0007950' => 'sci', 'Sc12g0001360' => 'sci', 'Sc13g0004330' => 'sci', 'Sc20g0005010' => 'sci', 'Sed0000361' => 'sed', 'Sed0001706' => 'sed', 'Sed0002422' => 'sed', 'Sed0004029' => 'sed', 'Sed0004602' => 'sed', 'Sed0004943' => 'sed', 'Sed0008646' => 'sed', 'Sed0023313' => 'sed', 'Sed0024843' => 'sed', 'SEGI_00081' => 'sgi', 'SEGI_00947' => 'sgi', 'SEGI_04046' => 'sgi', 'SEGI_06880' => 'sgi', 'SEGI_09736' => 'sgi', 'SEGI_12741' => 'sgi', 'SEGI_14530' => 'sgi', 'SEGI_20705' => 'sgi', 'SEGI_26088' => 'sgi', 'SEGI_28323' => 'sgi', 'SEGI_33343' => 'sgi', 'SGA_v2.0_scaffold126G33775' => 'sas', 'SGA_v2.0_scaffold2G01337' => 'sas', 'SGA_v2.0_scaffold38G15006' => 'sas', 'SGA_v2.0_scaffold39G15264' => 'sas', 'SGA_v2.0_scaffold453G51880' => 'sas', 'SHI12696' => 'shi', 'SMO367G1096' => 'smo', 'Solyc01g068630.3' => 'sly', 'Solyc05g011880.3' => 'sly', 'Solyc06g076300.3' => 'sly', 'Solyc09g010940.4' => 'sly', 'Solyc09g075890.3' => 'sly', 'Sopen01g030560' => 'spe', 'Sopen05g006630' => 'spe', 'Sopen06g032720' => 'spe', 'Sopen09g005660' => 'spe', 'Sopen09g030690' => 'spe', 'Sp4g14540' => 'spa', 'Sp4g20030' => 'spa', 'Sp5g01320' => 'spa', 'Sp6g21170' => 'spa', 'Sp6g21180' => 'spa', 'Sp6g21190' => 'spa', 'Sp6g40220' => 'spa', 'TAR362G0122' => 'tar', 'TAR362G1338' => 'tar', 'TAR369G0590' => 'tar', 'TAR371G0824' => 'tar', 'TAR622G1429' => 'tar', 'TAR623G0734' => 'tar', 'TAR625G0441' => 'tar', 'TAR629G0976' => 'tar', 'TAR633G1195' => 'tar', 'TAR636G2660' => 'tar', 'THA.LOC104799440' => 'tha', 'THA.LOC104800966' => 'tha', 'THA.LOC104806559' => 'tha', 'THA.LOC104810765' => 'tha', 'THA.LOC104816266' => 'tha', 'THA.LOC104817419' => 'tha', 'THA.LOC104827021' => 'tha', 'Thecc.01G327400' => 'tca', 'Thecc.04G229200' => 'tca', 'Thecc.05G037400' => 'tca', 'Thecc.09G318600' => 'tca', 'Thecc.09G318700' => 'tca', 'Thhalv10006238m.g' => 'esa', 'Thhalv10014321m.g' => 'esa', 'Thhalv10014335m.g' => 'esa', 'Thhalv10015826m.g' => 'esa', 'Thhalv10017107m.g' => 'esa', 'Thhalv10017180m.g' => 'esa', 'Thhalv10029339m.g' => 'esa', 'TPR.G1699' => 'tpr', 'TPR.G23609' => 'tpr', 'TPR.G3081' => 'tpr', 'TPR.G40397' => 'tpr', 'TPR.G5522' => 'tpr', 'TPR.G5618' => 'tpr', 'TPR.G5626' => 'tpr', 'TWI09G1632' => 'twi', 'TWI23G1230' => 'twi', 'TWI53G1064' => 'twi', 'TWI59G0751' => 'twi', 'TWI74G0947' => 'twi', 'TWI77G0337' => 'twi', 'TWI79G1254' => 'twi', 'unitig_0.g2341' => 'ugi', 'unitig_26.g10006' => 'ugi', 'unitig_26.g10008' => 'ugi', 'unitig_26.g9192' => 'ugi', 'vmacro14547' => 'vma', 'vmacro15333' => 'vma', 'vmacro18743' => 'vma', 'vmacro20166' => 'vma', 'VMungo0331G0523' => 'vmu', 'VMungo0331G1202' => 'vmu', 'VMungo0720G1228' => 'vmu', 'VMungo0720G1514' => 'vmu', 'VMungo1080G0169' => 'vmu', 'VMungo1127G1475' => 'vmu', 'VMungo1383G1208' => 'vmu', 'VMungo1383G1698' => 'vmu', 'Zm00001eb012270' => 'zma', 'Zm00001eb054100' => 'zma', 'Zm00001eb063350' => 'zma', 'Zm00001eb328560' => 'zma', 'Zm00001eb342820' => 'zma', 'Zm00001eb362210' => 'zma', 'Zm00001eb397730' => 'zma', 'Zm00001eb399750' => 'zma' ) $gf_id = 'HOM05D000959' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000959' ) $data_identifier = 'HOM05D000959' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 5, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 5, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 10, 'mbi' => (int) 3, 'mco' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 2, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 3, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 11, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399750' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000959', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '622', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p07100' => 'bna', 'A03p11720' => 'bna', 'A05p08300' => 'bna', 'A05p13380' => 'bna', 'A09p54130' => 'bna', 'A10p16690' => 'bna', 'A10p16700' => 'bna', 'A10p33390' => 'bna', 'Aa31LG10G16020' => 'aar', 'Aa31LG1G11810' => 'aar', 'Aa31LG1G11830' => 'aar', 'Aa31LG1G22510' => 'aar', 'Aa31LG5G4890' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5793' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2310' => 'aag', 'Actinidia08499' => 'ach', 'Actinidia11262' => 'ach', 'Actinidia23926' => 'ach', 'Actinidia34420' => 'ach', 'Actinidia36970' => 'ach', 'Ah.02g111220' => 'amhyb', 'Ah.15g097750' => 'amhyb', 'AL4G27500' => 'aly', 'AL6G11470' => 'aly', 'AL8G35950' => 'aly', 'AL8G35960' => 'aly', 'AL8G35970' => 'aly', 'Aqoxy1G00912' => 'aox', 'Aqoxy2G02253' => 'aox', 'Aqoxy2G02411' => 'aox', 'Aqoxy5G00485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BZ66YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K8ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM4FUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6BF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HFV7XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25JBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0YNNV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MAKK6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P70IT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP2Z6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V61LZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YWP64R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3S9AI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7PGHH' => 'arhy', 'AT2G32150' => 'ath', 'AT3G62040' => 'ath', 'AT5G02230' => 'ath', 'AT5G59480' => 'ath', 'AT5G59490' => 'ath', 'ATR0332G060' => 'atr', 'ATR0559G190' => 'atr', 'ATR0693G294' => 'atr', 'Atru.chr3.3975' => 'acertr', 'Atru.chr3.3976' => 'acertr', 'Atru.chr3.3977' => 'acertr', 'Atru.chr4.2498' => 'acertr', 'Atru.chr5.838' => 'acertr', 'Atru.chr8.1990' => 'acertr', 'Atru.chr8.1991' => 'acertr', 'Atru.chr8.1992' => 'acertr', 'AUR62001759' => 'cqu', 'AUR62009545' => 'cqu', 'AUR62010474' => 'cqu', 'AUR62025820' => 'cqu', 'AUR62030422' => 'cqu', 'AUR62033605' => 'cqu', 'AUR62038615' => 'cqu', 'AUR62041347' => 'cqu', 'BcaB01g04574' => 'bca', 'BcaB02g09263' => 'bca', 'BcaB02g10453' => 'bca', 'BcaB05g22513' => 'bca', 'BcaB08g36253' => 'bca', 'BcaB08g36254' => 'bca', 'BcaC01g06519' => 'bca', 'BcaC02g11889' => 'bca', 'BcaC03g14010' => 'bca', 'BcaC03g18439' => 'bca', 'BcaC04g19765' => 'bca', 'BcaC09g48432' => 'bca', 'BcaNung07302' => 'bca', 'BolC2t06040H' => 'bol', 'BolC2t07346H' => 'bol', 'BolC3t13817H' => 'bol', 'BolC4t22625H' => 'bol', 'BolC4t23297H' => 'bol', 'BolC8t51278H' => 'bol', 'BolC9t58050H' => 'bol', 'BolC9t58051H' => 'bol', 'BolC9t60163H' => 'bol', 'BraA02t04712Z' => 'bra', 'BraA02t05791Z' => 'bra', 'BraA03t10483Z' => 'bra', 'BraA05t19795Z' => 'bra', 'BraA05t20276Z' => 'bra', 'BraA09t40827Z' => 'bra', 'BraA10t43750Z' => 'bra', 'BraA10t43751Z' => 'bra', 'BraA10t45370Z' => 'bra', 'C02p00400' => 'bna', 'C02p12460' => 'bna', 'C03p13680' => 'bna', 'C04p10270' => 'bna', 'C04p17500' => 'bna', 'C08p37010' => 'bna', 'C09p51880' => 'bna', 'C09p51890' => 'bna', 'C09p74300' => 'bna', 'CAN.G179.26' => 'can', 'CAN.G3384.1' => 'can', 'CAN.G394.68' => 'can', 'CAN.G907.13' => 'can', 'CANSAT11G0012' => 'cansat', 'CANSAT25G1586' => 'cansat', 'CANSAT35G0735' => 'cansat', 'CANSAT54G0556' => 'cansat', 'CANSAT64G0356' => 'cansat', 'CANSAT78G2042' => 'cansat', 'CARHR125920' => 'chi', 'CARHR131910' => 'chi', 'CARHR172390' => 'chi', 'CARHR211140' => 'chi', 'CARHR285850' => 'chi', 'CARHR285860' => 'chi', 'Carub.0004s1347' => 'cru', 'Carub.0004s1960' => 'cru', 'Carub.0005s2880' => 'cru', 'Carub.0006s0107' => 'cru', 'Carub.0008s2015' => 'cru', 'Carub.0008s2016' => 'cru', 'Carub.0008s2017' => 'cru', 'Ca_01315_v3' => 'car', 'Ca_05063_v3' => 'car', 'Ca_10231_v3' => 'car', 'Ca_10913_v3' => 'car', 'Ca_19156_v3' => 'car', 'Ca_23644_v3' => 'car', 'Ca_26735_v3' => 'car', 'Cc01_g13130' => 'ccan', 'Cc02_g21690' => 'ccan', 'Cc03_g03600' => 'ccan', 'Cc06_g02510' => 'ccan', 'CDE02G1265' => 'cde', 'CDE05G0415' => 'cde', 'CDE08G1082' => 'cde', 'Cfa005780' => 'cfa', 'Cfa011522' => 'cfa', 'Cfa011523' => 'cfa', 'Cfa015627' => 'cfa', 'Cfa017359' => 'cfa', 'Ciclev10005687m.g' => 'ccl', 'Ciclev10012173m.g' => 'ccl', 'Ciclev10021621m.g' => 'ccl', 'Ciclev10028968m.g' => 'ccl', 'Ciclev10029907m.g' => 'ccl', 'CiPaw.01G164800' => 'cil', 'CiPaw.07G083700' => 'cil', 'CiPaw.07G127000' => 'cil', 'CiPaw.07G136900' => 'cil', 'CiPaw.08G081700' => 'cil', 'CiPaw.09G194600' => 'cil', 'CiPaw.10G146500' => 'cil', 'CiPaw.13G091500' => 'cil', 'CiPaw.13G091600' => 'cil', 'ClCG00G003390' => 'cla', 'ClCG01G007220' => 'cla', 'ClCG03G001370' => 'cla', 'ClCG04G008100' => 'cla', 'ClCG06G006110' => 'cla', 'ClCG06G006130' => 'cla', 'ClCG10G021210' => 'cla', 'COL.COLO4_07648' => 'col', 'COL.COLO4_07650' => 'col', 'COL.COLO4_07651' => 'col', 'COL.COLO4_14780' => 'col', 'COL.COLO4_18546' => 'col', 'COL.COLO4_18547' => 'col', 'COL.COLO4_23103' => 'col', 'COL.COLO4_30419' => 'col', 'COL.COLO4_34232' => 'col', 'Cpa.g.sc169.20' => 'cpa', 'Cpa.g.sc57.45' => 'cpa', 'Cpa.g.sc58.124' => 'cpa', 'Cpa.g.sc58.125' => 'cpa', 'Cpa.g.sc81.118' => 'cpa', 'Cpa.g.sc81.119' => 'cpa', 'Cre12.g524700' => 'cre', 'CsaV3_1G034430' => 'csa', 'CsaV3_1G034440' => 'csa', 'CsaV3_1G034450' => 'csa', 'CsaV3_3G034830' => 'csa', 'CsaV3_4G025090' => 'csa', 'CsaV3_5G018660' => 'csa', 'CsaV3_6G038160' => 'csa', 'CSS0003447' => 'camsi', 'CSS0017840' => 'camsi', 'CSS0019260' => 'camsi', 'CSS0040375' => 'camsi', 'CSS0042533' => 'camsi', 'DCAR_005960' => 'dca', 'DCAR_012104' => 'dca', 'DCAR_012105' => 'dca', 'DCAR_012293' => 'dca', 'DCAR_015632' => 'dca', 'DCAR_024602' => 'dca', 'DCAR_028752' => 'dca', 'Dinv06261' => 'din', 'Dinv13982' => 'din', 'Dinv17029' => 'din', 'Dinv18463' => 'din', 'Dinv33181' => 'din', 'Dinv35585' => 'din', 'Dinv37161' => 'din', 'Dinv42977' => 'din', 'Dinv43122' => 'din', 'Dinv44517' => 'din', 'Duzib093G0256' => 'dzi', 'Duzib106G1254' => 'dzi', 'Duzib128G1789' => 'dzi', 'Duzib133G0633' => 'dzi', 'Duzib138G0510' => 'dzi', 'Duzib150G1084' => 'dzi', 'Duzib168G0488' => 'dzi', 'Duzib168G1523' => 'dzi', 'Duzib170G0133' => 'dzi', 'ECA234G1433' => 'eca', 'ECA236G1432' => 'eca', 'ECA236G2256' => 'eca', 'ECA236G2365' => 'eca', 'ECA236G4830' => 'eca', 'ECA248G1505' => 'eca', 'EL10Ac3g06431' => 'bvu', 'EL10Ac5g12577' => 'bvu', 'EL10Ac6g13533' => 'bvu', 'EL10Ac7g16045' => 'bvu', 'Eucgr.A01281' => 'egr', 'Eucgr.B02326' => 'egr', 'Eucgr.H03532' => 'egr', 'Eucgr.K00553' => 'egr', 'Eucgr.K03116' => 'egr', 'FAN02G3963' => 'fan', 'FAN05G0438' => 'fan', 'FAN09G2434' => 'fan', 'FAN12G3984' => 'fan', 'FAN14G0798' => 'fan', 'FAN17G0652' => 'fan', 'FAN19G1988' => 'fan', 'FAN22G0632' => 'fan', 'FAN23G0387' => 'fan', 'FAN26G1323' => 'fan', 'FAN28G0666' => 'fan', 'FvH4_1g26080' => 'fve', 'FvH4_3g36780' => 'fve', 'FvH4_4g15270' => 'fve', 'FvH4_6g13490' => 'fve', 'Glyma.01G098700' => 'gma', 'Glyma.03G065900' => 'gma', 'Glyma.03G073754' => 'gma', 'Glyma.03G073758' => 'gma', 'Glyma.03G083200' => 'gma', 'Glyma.03G225500' => 'gma', 'Glyma.05G037766' => 'gma', 'Glyma.07G133500' => 'gma', 'Glyma.10G139400' => 'gma', 'Glyma.10G248900' => 'gma', 'Glyma.11G137800' => 'gma', 'Glyma.12G061300' => 'gma', 'Glyma.13G337900' => 'gma', 'Glyma.15G036600' => 'gma', 'Glyma.18G182800' => 'gma', 'Glyma.19G222500' => 'gma', 'Glyma.20G144800' => 'gma', 'Gohir.A01G222000' => 'ghi', 'Gohir.A03G044000' => 'ghi', 'Gohir.A03G044100' => 'ghi', 'Gohir.A04G083100' => 'ghi', 'Gohir.A07G127200' => 'ghi', 'Gohir.A07G132400' => 'ghi', 'Gohir.A08G000700' => 'ghi', 'Gohir.A11G327300' => 'ghi', 'Gohir.D01G211500' => 'ghi', 'Gohir.D03G123400' => 'ghi', 'Gohir.D03G123500' => 'ghi', 'Gohir.D04G121800' => 'ghi', 'Gohir.D07G131500' => 'ghi', 'Gohir.D07G136600' => 'ghi', 'Gohir.D08G011600' => 'ghi', 'Gohir.D11G346200' => 'ghi', 'Gorai.001G142800' => 'gra', 'Gorai.001G148700' => 'gra', 'Gorai.002G257300' => 'gra', 'Gorai.003G130000' => 'gra', 'Gorai.003G130100' => 'gra', 'Gorai.004G005300' => 'gra', 'Gorai.007G376500' => 'gra', 'Gorai.012G104700' => 'gra', 'GSVIVG01017946001' => 'vvi', 'GSVIVG01024928001' => 'vvi', 'GSVIVG01028227001' => 'vvi', 'GSVIVG01034151001' => 'vvi', 'HanXRQChr05g0135031' => 'han', 'HanXRQChr05g0135041' => 'han', 'HanXRQChr05g0140021' => 'han', 'HanXRQChr06g0178981' => 'han', 'HanXRQChr07g0188251' => 'han', 'HanXRQChr08g0235311' => 'han', 'HanXRQChr09g0271011' => 'han', 'HanXRQChr10g0293321' => 'han', 'HanXRQChr13g0388171' => 'han', 'Haze_00916' => 'cav', 'Haze_05063' => 'cav', 'Haze_20814' => 'cav', 'Haze_24128' => 'cav', 'Hma1.2p1_0745F.1_g212010' => 'hma', 'Hma1.2p1_0757F.1_g213260' => 'hma', 'Hma1.2p1_0936F.1_g238840' => 'hma', 'Hma1.2p1_1735F.1_g299890' => 'hma', 'Hma1.2p1_1861F.1_g305685' => 'hma', 'HPP92_003397' => 'vpl', 'HPP92_012597' => 'vpl', 'HPP92_015520' => 'vpl', 'HPP92_015539' => 'vpl', 'HPP92_020373' => 'vpl', 'Hund04938' => 'sun', 'Hund10677' => 'sun', 'Hund11033' => 'sun', 'Hund12155' => 'sun', 'Lalb_Chr01g0022551' => 'lal', 'Lalb_Chr03g0042341' => 'lal', 'Lalb_Chr07g0192931' => 'lal', 'Lalb_Chr12g0209551' => 'lal', 'Lalb_Chr19g0125251' => 'lal', 'Lalb_Chr19g0137891' => 'lal', 'Lalb_Chr21g0304641' => 'lal', 'Lalb_Chr21g0309881' => 'lal', 'Lj1A5T12' => 'lonja', 'Lj1C148G10' => 'lonja', 'Lj2A93T83' => 'lonja', 'Lj3A738G68' => 'lonja', 'Lj3C966T1' => 'lonja', 'Lj3g0018958' => 'lja', 'Lj3g0021831' => 'lja', 'Lj3g0025443' => 'lja', 'Lj4g0026809' => 'lja', 'Lj5g0012558' => 'lja', 'Lj5g0021586' => 'lja', 'Lsat_1_v5_gn_5_156840' => 'lsa', 'Lsat_1_v5_gn_8_73460' => 'lsa', 'Lsat_1_v5_gn_8_73481' => 'lsa', 'Lsat_1_v5_gn_9_31601' => 'lsa', 'Lsat_1_v5_gn_9_77320' => 'lsa', 'Manes.01G171300' => 'mes', 'Manes.01G171400' => 'mes', 'Manes.01G236100' => 'mes', 'Manes.02G130500' => 'mes', 'Manes.02G130600' => 'mes', 'Manes.03G180200' => 'mes', 'Manes.05G007000' => 'mes', 'Manes.08G084400' => 'mes', 'Manes.09G092600' => 'mes', 'Manes.15G027900' => 'mes', 'MBI04_g40948_MAGBIO' => 'mbi', 'MBI14_g12123_MAGBIO' => 'mbi', 'MBI18_g28915_MAGBIO' => 'mbi', 'MCO09G053' => 'mco', 'MCO11G782' => 'mco', 'MCO15G215' => 'mco', 'MD03G1088500' => 'mdo', 'MD03G1088600' => 'mdo', 'MD04G1130800' => 'mdo', 'MD09G1291700' => 'mdo', 'MD11G1097500' => 'mdo', 'MD11G1097600' => 'mdo', 'MD12G1143900' => 'mdo', 'MD13G1191400' => 'mdo', 'MD16G1191500' => 'mdo', 'Medtr1g085570' => 'mtr', 'Medtr1g104610' => 'mtr', 'Medtr2g097520' => 'mtr', 'Medtr4g021800' => 'mtr', 'Medtr4g021825' => 'mtr', 'Medtr4g064270' => 'mtr', 'Medtr4g064380' => 'mtr', 'Medtr7g062150' => 'mtr', 'MELO3C003138.2' => 'cme', 'MELO3C005187.2' => 'cme', 'MELO3C009252.2' => 'cme', 'MELO3C014481.2' => 'cme', 'MELO3C020616.2' => 'cme', 'MELO3C020617.2' => 'cme', 'MELO3C020618.2' => 'cme', 'Migut.G00328' => 'egut', 'Migut.J00320' => 'egut', 'Migut.L01000' => 'egut', 'Migut.L01953' => 'egut', 'MSTRG.10253' => 'ama', 'MSTRG.19077' => 'ama', 'MSTRG.26780' => 'ama', 'MSTRG.4023' => 'ama', 'MSTRG.5655' => 'ama', 'MSTRG.9992' => 'ama', 'Nitab4.5_0000043g0310' => 'nta', 'Nitab4.5_0000463g0080' => 'nta', 'Nitab4.5_0000705g0170' => 'nta', 'Nitab4.5_0001326g0060' => 'nta', 'Nitab4.5_0001628g0030' => 'nta', 'Nitab4.5_0002103g0110' => 'nta', 'Nitab4.5_0002946g0030' => 'nta', 'Nitab4.5_0004639g0030' => 'nta', 'Nn2g11149' => 'nnu', 'Nn2g13389' => 'nnu', 'Nn4g25326' => 'nnu', 'Nn4g26290' => 'nnu', 'Nn5g29865' => 'nnu', 'Oeu004163.1' => 'oeu', 'Oeu006901.1' => 'oeu', 'Oeu010096.1' => 'oeu', 'Oeu024340.1' => 'oeu', 'Oeu048369.1' => 'oeu', 'Os01g0973000' => 'osa', 'Os03g0273800' => 'osa', 'Os03g0701200' => 'osa', 'Os03g0834050' => 'osa', 'Os07g0634400' => 'osa', 'Peaxi162Scf00092g01414' => 'pax', 'Peaxi162Scf00165g00818' => 'pax', 'Peaxi162Scf00309g00516' => 'pax', 'Peaxi162Scf00774g00218' => 'pax', 'PGR004G1824' => 'pgr', 'PGR004G2606' => 'pgr', 'PGR031G2716' => 'pgr', 'PGR102G2460' => 'pgr', 'PGR142G2599' => 'pgr', 'PGSC0003DMG400000843' => 'stu', 'PGSC0003DMG400008829' => 'stu', 'PGSC0003DMG400030418' => 'stu', 'PGSC0003DMG400031834' => 'stu', 'PGSC0003DMG401028300' => 'stu', 'PGSC0003DMG402028300' => 'stu', 'Phvul.001G219300' => 'pvu', 'Phvul.007G056000' => 'pvu', 'Phvul.007G208000' => 'pvu', 'Phvul.008G119500' => 'pvu', 'Phvul.010G011200' => 'pvu', 'Phvul.010G014800' => 'pvu', 'Phvul.011G062900' => 'pvu', 'Phvul.L007043' => 'pvu', 'Potri.001G242300' => 'ptr', 'Potri.002G185300' => 'ptr', 'Potri.006G086900' => 'ptr', 'Potri.008G151700' => 'ptr', 'Potri.009G033500' => 'ptr', 'Potri.010G089300' => 'ptr', 'Potri.014G110800' => 'ptr', 'Pp3c27_8130' => 'ppa', 'Pp3c6_27410' => 'ppa', 'PRCOL_00001659' => 'pco', 'PRCOL_00001927' => 'pco', 'PRCOL_00003649' => 'pco', 'Prupe.1G011600' => 'ppe', 'Prupe.3G000800' => 'ppe', 'Prupe.3G001100' => 'ppe', 'Prupe.6G072700' => 'ppe', 'Prupe.6G072800' => 'ppe', 'Prupe.6G257300' => 'ppe', 'Prupe.8G033000' => 'ppe', 'Psat0s2633g0080' => 'psa', 'Psat0s3396g0080' => 'psa', 'Psat0s3396g0200' => 'psa', 'Psat3g139080' => 'psa', 'Psat5g285080' => 'psa', 'Psat6g157760' => 'psa', 'Psat6g208440' => 'psa', 'Psat7g215320' => 'psa', 'Psat7g215400' => 'psa', 'Psat7g235600' => 'psa', 'Psat7g235760' => 'psa', 'PSO063G4603' => 'pso', 'PSO210G0182' => 'pso', 'PSO210G0196' => 'pso', 'PSO339G0394' => 'pso', 'PSO339G4127' => 'pso', 'PSO513G0064' => 'pso', 'PSO761G0079' => 'pso', 'QL01p031003' => 'qlo', 'QL01p031078' => 'qlo', 'QL06p003004' => 'qlo', 'QL07p048731' => 'qlo', 'QL09p037427' => 'qlo', 'RcHm_v2.0_Chr3g0466361' => 'rch', 'RcHm_v2.0_Chr3g0485571' => 'rch', 'RcHm_v2.0_Chr4g0416551' => 'rch', 'RcHm_v2.0_Chr5g0065831' => 'rch', 'Rhsim01G0230500' => 'rsi', 'Rhsim05G0194000' => 'rsi', 'Rhsim08G0250400' => 'rsi', 'Sabra02G0131000' => 'sbr', 'Sabra06G0066300' => 'sbr', 'Sabra08G0115500' => 'sbr', 'Sabra09G0023900' => 'sbr', 'Sabra10G0054000' => 'sbr', 'Sabra14G0081500' => 'sbr', 'Sabra16G0147100' => 'sbr', 'SalBow2G2957' => 'sbo', 'SalBow4G3320' => 'sbo', 'SalBow8G1894' => 'sbo', 'Sc07g0007950' => 'sci', 'Sc12g0001360' => 'sci', 'Sc13g0004330' => 'sci', 'Sc20g0005010' => 'sci', 'Sed0000361' => 'sed', 'Sed0001706' => 'sed', 'Sed0002422' => 'sed', 'Sed0004029' => 'sed', 'Sed0004602' => 'sed', 'Sed0004943' => 'sed', 'Sed0008646' => 'sed', 'Sed0023313' => 'sed', 'Sed0024843' => 'sed', 'SEGI_00081' => 'sgi', 'SEGI_00947' => 'sgi', 'SEGI_04046' => 'sgi', 'SEGI_06880' => 'sgi', 'SEGI_09736' => 'sgi', 'SEGI_12741' => 'sgi', 'SEGI_14530' => 'sgi', 'SEGI_20705' => 'sgi', 'SEGI_26088' => 'sgi', 'SEGI_28323' => 'sgi', 'SEGI_33343' => 'sgi', 'SGA_v2.0_scaffold126G33775' => 'sas', 'SGA_v2.0_scaffold2G01337' => 'sas', 'SGA_v2.0_scaffold38G15006' => 'sas', 'SGA_v2.0_scaffold39G15264' => 'sas', 'SGA_v2.0_scaffold453G51880' => 'sas', 'SHI12696' => 'shi', 'SMO367G1096' => 'smo', 'Solyc01g068630.3' => 'sly', 'Solyc05g011880.3' => 'sly', 'Solyc06g076300.3' => 'sly', 'Solyc09g010940.4' => 'sly', 'Solyc09g075890.3' => 'sly', 'Sopen01g030560' => 'spe', 'Sopen05g006630' => 'spe', 'Sopen06g032720' => 'spe', 'Sopen09g005660' => 'spe', 'Sopen09g030690' => 'spe', 'Sp4g14540' => 'spa', 'Sp4g20030' => 'spa', 'Sp5g01320' => 'spa', 'Sp6g21170' => 'spa', 'Sp6g21180' => 'spa', 'Sp6g21190' => 'spa', 'Sp6g40220' => 'spa', 'TAR362G0122' => 'tar', 'TAR362G1338' => 'tar', 'TAR369G0590' => 'tar', 'TAR371G0824' => 'tar', 'TAR622G1429' => 'tar', 'TAR623G0734' => 'tar', 'TAR625G0441' => 'tar', 'TAR629G0976' => 'tar', 'TAR633G1195' => 'tar', 'TAR636G2660' => 'tar', 'THA.LOC104799440' => 'tha', 'THA.LOC104800966' => 'tha', 'THA.LOC104806559' => 'tha', 'THA.LOC104810765' => 'tha', 'THA.LOC104816266' => 'tha', 'THA.LOC104817419' => 'tha', 'THA.LOC104827021' => 'tha', 'Thecc.01G327400' => 'tca', 'Thecc.04G229200' => 'tca', 'Thecc.05G037400' => 'tca', 'Thecc.09G318600' => 'tca', 'Thecc.09G318700' => 'tca', 'Thhalv10006238m.g' => 'esa', 'Thhalv10014321m.g' => 'esa', 'Thhalv10014335m.g' => 'esa', 'Thhalv10015826m.g' => 'esa', 'Thhalv10017107m.g' => 'esa', 'Thhalv10017180m.g' => 'esa', 'Thhalv10029339m.g' => 'esa', 'TPR.G1699' => 'tpr', 'TPR.G23609' => 'tpr', 'TPR.G3081' => 'tpr', 'TPR.G40397' => 'tpr', 'TPR.G5522' => 'tpr', 'TPR.G5618' => 'tpr', 'TPR.G5626' => 'tpr', 'TWI09G1632' => 'twi', 'TWI23G1230' => 'twi', 'TWI53G1064' => 'twi', 'TWI59G0751' => 'twi', 'TWI74G0947' => 'twi', 'TWI77G0337' => 'twi', 'TWI79G1254' => 'twi', 'unitig_0.g2341' => 'ugi', 'unitig_26.g10006' => 'ugi', 'unitig_26.g10008' => 'ugi', 'unitig_26.g9192' => 'ugi', 'vmacro14547' => 'vma', 'vmacro15333' => 'vma', 'vmacro18743' => 'vma', 'vmacro20166' => 'vma', 'VMungo0331G0523' => 'vmu', 'VMungo0331G1202' => 'vmu', 'VMungo0720G1228' => 'vmu', 'VMungo0720G1514' => 'vmu', 'VMungo1080G0169' => 'vmu', 'VMungo1127G1475' => 'vmu', 'VMungo1383G1208' => 'vmu', 'VMungo1383G1698' => 'vmu', 'Zm00001eb012270' => 'zma', 'Zm00001eb054100' => 'zma', 'Zm00001eb063350' => 'zma', 'Zm00001eb328560' => 'zma', 'Zm00001eb342820' => 'zma', 'Zm00001eb362210' => 'zma', 'Zm00001eb397730' => 'zma', 'Zm00001eb399750' => 'zma' ), 'gf_id' => 'HOM05D000959', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000959' ), 'data_identifier' => 'HOM05D000959', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000959', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '622', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p07100' => 'bna', 'A03p11720' => 'bna', 'A05p08300' => 'bna', 'A05p13380' => 'bna', 'A09p54130' => 'bna', 'A10p16690' => 'bna', 'A10p16700' => 'bna', 'A10p33390' => 'bna', 'Aa31LG10G16020' => 'aar', 'Aa31LG1G11810' => 'aar', 'Aa31LG1G11830' => 'aar', 'Aa31LG1G22510' => 'aar', 'Aa31LG5G4890' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5793' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2310' => 'aag', 'Actinidia08499' => 'ach', 'Actinidia11262' => 'ach', 'Actinidia23926' => 'ach', 'Actinidia34420' => 'ach', 'Actinidia36970' => 'ach', 'Ah.02g111220' => 'amhyb', 'Ah.15g097750' => 'amhyb', 'AL4G27500' => 'aly', 'AL6G11470' => 'aly', 'AL8G35950' => 'aly', 'AL8G35960' => 'aly', 'AL8G35970' => 'aly', 'Aqoxy1G00912' => 'aox', 'Aqoxy2G02253' => 'aox', 'Aqoxy2G02411' => 'aox', 'Aqoxy5G00485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BZ66YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K8ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM4FUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6BF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HFV7XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25JBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0YNNV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MAKK6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P70IT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP2Z6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V61LZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YWP64R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3S9AI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7PGHH' => 'arhy', 'AT2G32150' => 'ath', 'AT3G62040' => 'ath', 'AT5G02230' => 'ath', 'AT5G59480' => 'ath', 'AT5G59490' => 'ath', 'ATR0332G060' => 'atr', 'ATR0559G190' => 'atr', 'ATR0693G294' => 'atr', 'Atru.chr3.3975' => 'acertr', 'Atru.chr3.3976' => 'acertr', 'Atru.chr3.3977' => 'acertr', 'Atru.chr4.2498' => 'acertr', 'Atru.chr5.838' => 'acertr', 'Atru.chr8.1990' => 'acertr', 'Atru.chr8.1991' => 'acertr', 'Atru.chr8.1992' => 'acertr', 'AUR62001759' => 'cqu', 'AUR62009545' => 'cqu', 'AUR62010474' => 'cqu', 'AUR62025820' => 'cqu', 'AUR62030422' => 'cqu', 'AUR62033605' => 'cqu', 'AUR62038615' => 'cqu', 'AUR62041347' => 'cqu', 'BcaB01g04574' => 'bca', 'BcaB02g09263' => 'bca', 'BcaB02g10453' => 'bca', 'BcaB05g22513' => 'bca', 'BcaB08g36253' => 'bca', 'BcaB08g36254' => 'bca', 'BcaC01g06519' => 'bca', 'BcaC02g11889' => 'bca', 'BcaC03g14010' => 'bca', 'BcaC03g18439' => 'bca', 'BcaC04g19765' => 'bca', 'BcaC09g48432' => 'bca', 'BcaNung07302' => 'bca', 'BolC2t06040H' => 'bol', 'BolC2t07346H' => 'bol', 'BolC3t13817H' => 'bol', 'BolC4t22625H' => 'bol', 'BolC4t23297H' => 'bol', 'BolC8t51278H' => 'bol', 'BolC9t58050H' => 'bol', 'BolC9t58051H' => 'bol', 'BolC9t60163H' => 'bol', 'BraA02t04712Z' => 'bra', 'BraA02t05791Z' => 'bra', 'BraA03t10483Z' => 'bra', 'BraA05t19795Z' => 'bra', 'BraA05t20276Z' => 'bra', 'BraA09t40827Z' => 'bra', 'BraA10t43750Z' => 'bra', 'BraA10t43751Z' => 'bra', 'BraA10t45370Z' => 'bra', 'C02p00400' => 'bna', 'C02p12460' => 'bna', 'C03p13680' => 'bna', 'C04p10270' => 'bna', 'C04p17500' => 'bna', 'C08p37010' => 'bna', 'C09p51880' => 'bna', 'C09p51890' => 'bna', 'C09p74300' => 'bna', 'CAN.G179.26' => 'can', 'CAN.G3384.1' => 'can', 'CAN.G394.68' => 'can', 'CAN.G907.13' => 'can', 'CANSAT11G0012' => 'cansat', 'CANSAT25G1586' => 'cansat', 'CANSAT35G0735' => 'cansat', 'CANSAT54G0556' => 'cansat', 'CANSAT64G0356' => 'cansat', 'CANSAT78G2042' => 'cansat', 'CARHR125920' => 'chi', 'CARHR131910' => 'chi', 'CARHR172390' => 'chi', 'CARHR211140' => 'chi', 'CARHR285850' => 'chi', 'CARHR285860' => 'chi', 'Carub.0004s1347' => 'cru', 'Carub.0004s1960' => 'cru', 'Carub.0005s2880' => 'cru', 'Carub.0006s0107' => 'cru', 'Carub.0008s2015' => 'cru', 'Carub.0008s2016' => 'cru', 'Carub.0008s2017' => 'cru', 'Ca_01315_v3' => 'car', 'Ca_05063_v3' => 'car', 'Ca_10231_v3' => 'car', 'Ca_10913_v3' => 'car', 'Ca_19156_v3' => 'car', 'Ca_23644_v3' => 'car', 'Ca_26735_v3' => 'car', 'Cc01_g13130' => 'ccan', 'Cc02_g21690' => 'ccan', 'Cc03_g03600' => 'ccan', 'Cc06_g02510' => 'ccan', 'CDE02G1265' => 'cde', 'CDE05G0415' => 'cde', 'CDE08G1082' => 'cde', 'Cfa005780' => 'cfa', 'Cfa011522' => 'cfa', 'Cfa011523' => 'cfa', 'Cfa015627' => 'cfa', 'Cfa017359' => 'cfa', 'Ciclev10005687m.g' => 'ccl', 'Ciclev10012173m.g' => 'ccl', 'Ciclev10021621m.g' => 'ccl', 'Ciclev10028968m.g' => 'ccl', 'Ciclev10029907m.g' => 'ccl', 'CiPaw.01G164800' => 'cil', 'CiPaw.07G083700' => 'cil', 'CiPaw.07G127000' => 'cil', 'CiPaw.07G136900' => 'cil', 'CiPaw.08G081700' => 'cil', 'CiPaw.09G194600' => 'cil', 'CiPaw.10G146500' => 'cil', 'CiPaw.13G091500' => 'cil', 'CiPaw.13G091600' => 'cil', 'ClCG00G003390' => 'cla', 'ClCG01G007220' => 'cla', 'ClCG03G001370' => 'cla', 'ClCG04G008100' => 'cla', 'ClCG06G006110' => 'cla', 'ClCG06G006130' => 'cla', 'ClCG10G021210' => 'cla', 'COL.COLO4_07648' => 'col', 'COL.COLO4_07650' => 'col', 'COL.COLO4_07651' => 'col', 'COL.COLO4_14780' => 'col', 'COL.COLO4_18546' => 'col', 'COL.COLO4_18547' => 'col', 'COL.COLO4_23103' => 'col', 'COL.COLO4_30419' => 'col', 'COL.COLO4_34232' => 'col', 'Cpa.g.sc169.20' => 'cpa', 'Cpa.g.sc57.45' => 'cpa', 'Cpa.g.sc58.124' => 'cpa', 'Cpa.g.sc58.125' => 'cpa', 'Cpa.g.sc81.118' => 'cpa', 'Cpa.g.sc81.119' => 'cpa', 'Cre12.g524700' => 'cre', 'CsaV3_1G034430' => 'csa', 'CsaV3_1G034440' => 'csa', 'CsaV3_1G034450' => 'csa', 'CsaV3_3G034830' => 'csa', 'CsaV3_4G025090' => 'csa', 'CsaV3_5G018660' => 'csa', 'CsaV3_6G038160' => 'csa', 'CSS0003447' => 'camsi', 'CSS0017840' => 'camsi', 'CSS0019260' => 'camsi', 'CSS0040375' => 'camsi', 'CSS0042533' => 'camsi', 'DCAR_005960' => 'dca', 'DCAR_012104' => 'dca', 'DCAR_012105' => 'dca', 'DCAR_012293' => 'dca', 'DCAR_015632' => 'dca', 'DCAR_024602' => 'dca', 'DCAR_028752' => 'dca', 'Dinv06261' => 'din', 'Dinv13982' => 'din', 'Dinv17029' => 'din', 'Dinv18463' => 'din', 'Dinv33181' => 'din', 'Dinv35585' => 'din', 'Dinv37161' => 'din', 'Dinv42977' => 'din', 'Dinv43122' => 'din', 'Dinv44517' => 'din', 'Duzib093G0256' => 'dzi', 'Duzib106G1254' => 'dzi', 'Duzib128G1789' => 'dzi', 'Duzib133G0633' => 'dzi', 'Duzib138G0510' => 'dzi', 'Duzib150G1084' => 'dzi', 'Duzib168G0488' => 'dzi', 'Duzib168G1523' => 'dzi', 'Duzib170G0133' => 'dzi', 'ECA234G1433' => 'eca', 'ECA236G1432' => 'eca', 'ECA236G2256' => 'eca', 'ECA236G2365' => 'eca', 'ECA236G4830' => 'eca', 'ECA248G1505' => 'eca', 'EL10Ac3g06431' => 'bvu', 'EL10Ac5g12577' => 'bvu', 'EL10Ac6g13533' => 'bvu', 'EL10Ac7g16045' => 'bvu', 'Eucgr.A01281' => 'egr', 'Eucgr.B02326' => 'egr', 'Eucgr.H03532' => 'egr', 'Eucgr.K00553' => 'egr', 'Eucgr.K03116' => 'egr', 'FAN02G3963' => 'fan', 'FAN05G0438' => 'fan', 'FAN09G2434' => 'fan', 'FAN12G3984' => 'fan', 'FAN14G0798' => 'fan', 'FAN17G0652' => 'fan', 'FAN19G1988' => 'fan', 'FAN22G0632' => 'fan', 'FAN23G0387' => 'fan', 'FAN26G1323' => 'fan', 'FAN28G0666' => 'fan', 'FvH4_1g26080' => 'fve', 'FvH4_3g36780' => 'fve', 'FvH4_4g15270' => 'fve', 'FvH4_6g13490' => 'fve', 'Glyma.01G098700' => 'gma', 'Glyma.03G065900' => 'gma', 'Glyma.03G073754' => 'gma', 'Glyma.03G073758' => 'gma', 'Glyma.03G083200' => 'gma', 'Glyma.03G225500' => 'gma', 'Glyma.05G037766' => 'gma', 'Glyma.07G133500' => 'gma', 'Glyma.10G139400' => 'gma', 'Glyma.10G248900' => 'gma', 'Glyma.11G137800' => 'gma', 'Glyma.12G061300' => 'gma', 'Glyma.13G337900' => 'gma', 'Glyma.15G036600' => 'gma', 'Glyma.18G182800' => 'gma', 'Glyma.19G222500' => 'gma', 'Glyma.20G144800' => 'gma', 'Gohir.A01G222000' => 'ghi', 'Gohir.A03G044000' => 'ghi', 'Gohir.A03G044100' => 'ghi', 'Gohir.A04G083100' => 'ghi', 'Gohir.A07G127200' => 'ghi', 'Gohir.A07G132400' => 'ghi', 'Gohir.A08G000700' => 'ghi', 'Gohir.A11G327300' => 'ghi', 'Gohir.D01G211500' => 'ghi', 'Gohir.D03G123400' => 'ghi', 'Gohir.D03G123500' => 'ghi', 'Gohir.D04G121800' => 'ghi', 'Gohir.D07G131500' => 'ghi', 'Gohir.D07G136600' => 'ghi', 'Gohir.D08G011600' => 'ghi', 'Gohir.D11G346200' => 'ghi', 'Gorai.001G142800' => 'gra', 'Gorai.001G148700' => 'gra', 'Gorai.002G257300' => 'gra', 'Gorai.003G130000' => 'gra', 'Gorai.003G130100' => 'gra', 'Gorai.004G005300' => 'gra', 'Gorai.007G376500' => 'gra', 'Gorai.012G104700' => 'gra', 'GSVIVG01017946001' => 'vvi', 'GSVIVG01024928001' => 'vvi', 'GSVIVG01028227001' => 'vvi', 'GSVIVG01034151001' => 'vvi', 'HanXRQChr05g0135031' => 'han', 'HanXRQChr05g0135041' => 'han', 'HanXRQChr05g0140021' => 'han', 'HanXRQChr06g0178981' => 'han', 'HanXRQChr07g0188251' => 'han', 'HanXRQChr08g0235311' => 'han', 'HanXRQChr09g0271011' => 'han', 'HanXRQChr10g0293321' => 'han', 'HanXRQChr13g0388171' => 'han', 'Haze_00916' => 'cav', 'Haze_05063' => 'cav', 'Haze_20814' => 'cav', 'Haze_24128' => 'cav', 'Hma1.2p1_0745F.1_g212010' => 'hma', 'Hma1.2p1_0757F.1_g213260' => 'hma', 'Hma1.2p1_0936F.1_g238840' => 'hma', 'Hma1.2p1_1735F.1_g299890' => 'hma', 'Hma1.2p1_1861F.1_g305685' => 'hma', 'HPP92_003397' => 'vpl', 'HPP92_012597' => 'vpl', 'HPP92_015520' => 'vpl', 'HPP92_015539' => 'vpl', 'HPP92_020373' => 'vpl', 'Hund04938' => 'sun', 'Hund10677' => 'sun', 'Hund11033' => 'sun', 'Hund12155' => 'sun', 'Lalb_Chr01g0022551' => 'lal', 'Lalb_Chr03g0042341' => 'lal', 'Lalb_Chr07g0192931' => 'lal', 'Lalb_Chr12g0209551' => 'lal', 'Lalb_Chr19g0125251' => 'lal', 'Lalb_Chr19g0137891' => 'lal', 'Lalb_Chr21g0304641' => 'lal', 'Lalb_Chr21g0309881' => 'lal', 'Lj1A5T12' => 'lonja', 'Lj1C148G10' => 'lonja', 'Lj2A93T83' => 'lonja', 'Lj3A738G68' => 'lonja', 'Lj3C966T1' => 'lonja', 'Lj3g0018958' => 'lja', 'Lj3g0021831' => 'lja', 'Lj3g0025443' => 'lja', 'Lj4g0026809' => 'lja', 'Lj5g0012558' => 'lja', 'Lj5g0021586' => 'lja', 'Lsat_1_v5_gn_5_156840' => 'lsa', 'Lsat_1_v5_gn_8_73460' => 'lsa', 'Lsat_1_v5_gn_8_73481' => 'lsa', 'Lsat_1_v5_gn_9_31601' => 'lsa', 'Lsat_1_v5_gn_9_77320' => 'lsa', 'Manes.01G171300' => 'mes', 'Manes.01G171400' => 'mes', 'Manes.01G236100' => 'mes', 'Manes.02G130500' => 'mes', 'Manes.02G130600' => 'mes', 'Manes.03G180200' => 'mes', 'Manes.05G007000' => 'mes', 'Manes.08G084400' => 'mes', 'Manes.09G092600' => 'mes', 'Manes.15G027900' => 'mes', 'MBI04_g40948_MAGBIO' => 'mbi', 'MBI14_g12123_MAGBIO' => 'mbi', 'MBI18_g28915_MAGBIO' => 'mbi', 'MCO09G053' => 'mco', 'MCO11G782' => 'mco', 'MCO15G215' => 'mco', 'MD03G1088500' => 'mdo', 'MD03G1088600' => 'mdo', 'MD04G1130800' => 'mdo', 'MD09G1291700' => 'mdo', 'MD11G1097500' => 'mdo', 'MD11G1097600' => 'mdo', 'MD12G1143900' => 'mdo', 'MD13G1191400' => 'mdo', 'MD16G1191500' => 'mdo', 'Medtr1g085570' => 'mtr', 'Medtr1g104610' => 'mtr', 'Medtr2g097520' => 'mtr', 'Medtr4g021800' => 'mtr', 'Medtr4g021825' => 'mtr', 'Medtr4g064270' => 'mtr', 'Medtr4g064380' => 'mtr', 'Medtr7g062150' => 'mtr', 'MELO3C003138.2' => 'cme', 'MELO3C005187.2' => 'cme', 'MELO3C009252.2' => 'cme', 'MELO3C014481.2' => 'cme', 'MELO3C020616.2' => 'cme', 'MELO3C020617.2' => 'cme', 'MELO3C020618.2' => 'cme', 'Migut.G00328' => 'egut', 'Migut.J00320' => 'egut', 'Migut.L01000' => 'egut', 'Migut.L01953' => 'egut', 'MSTRG.10253' => 'ama', 'MSTRG.19077' => 'ama', 'MSTRG.26780' => 'ama', 'MSTRG.4023' => 'ama', 'MSTRG.5655' => 'ama', 'MSTRG.9992' => 'ama', 'Nitab4.5_0000043g0310' => 'nta', 'Nitab4.5_0000463g0080' => 'nta', 'Nitab4.5_0000705g0170' => 'nta', 'Nitab4.5_0001326g0060' => 'nta', 'Nitab4.5_0001628g0030' => 'nta', 'Nitab4.5_0002103g0110' => 'nta', 'Nitab4.5_0002946g0030' => 'nta', 'Nitab4.5_0004639g0030' => 'nta', 'Nn2g11149' => 'nnu', 'Nn2g13389' => 'nnu', 'Nn4g25326' => 'nnu', 'Nn4g26290' => 'nnu', 'Nn5g29865' => 'nnu', 'Oeu004163.1' => 'oeu', 'Oeu006901.1' => 'oeu', 'Oeu010096.1' => 'oeu', 'Oeu024340.1' => 'oeu', 'Oeu048369.1' => 'oeu', 'Os01g0973000' => 'osa', 'Os03g0273800' => 'osa', 'Os03g0701200' => 'osa', 'Os03g0834050' => 'osa', 'Os07g0634400' => 'osa', 'Peaxi162Scf00092g01414' => 'pax', 'Peaxi162Scf00165g00818' => 'pax', 'Peaxi162Scf00309g00516' => 'pax', 'Peaxi162Scf00774g00218' => 'pax', 'PGR004G1824' => 'pgr', 'PGR004G2606' => 'pgr', 'PGR031G2716' => 'pgr', 'PGR102G2460' => 'pgr', 'PGR142G2599' => 'pgr', 'PGSC0003DMG400000843' => 'stu', 'PGSC0003DMG400008829' => 'stu', 'PGSC0003DMG400030418' => 'stu', 'PGSC0003DMG400031834' => 'stu', 'PGSC0003DMG401028300' => 'stu', 'PGSC0003DMG402028300' => 'stu', 'Phvul.001G219300' => 'pvu', 'Phvul.007G056000' => 'pvu', 'Phvul.007G208000' => 'pvu', 'Phvul.008G119500' => 'pvu', 'Phvul.010G011200' => 'pvu', 'Phvul.010G014800' => 'pvu', 'Phvul.011G062900' => 'pvu', 'Phvul.L007043' => 'pvu', 'Potri.001G242300' => 'ptr', 'Potri.002G185300' => 'ptr', 'Potri.006G086900' => 'ptr', 'Potri.008G151700' => 'ptr', 'Potri.009G033500' => 'ptr', 'Potri.010G089300' => 'ptr', 'Potri.014G110800' => 'ptr', 'Pp3c27_8130' => 'ppa', 'Pp3c6_27410' => 'ppa', 'PRCOL_00001659' => 'pco', 'PRCOL_00001927' => 'pco', 'PRCOL_00003649' => 'pco', 'Prupe.1G011600' => 'ppe', 'Prupe.3G000800' => 'ppe', 'Prupe.3G001100' => 'ppe', 'Prupe.6G072700' => 'ppe', 'Prupe.6G072800' => 'ppe', 'Prupe.6G257300' => 'ppe', 'Prupe.8G033000' => 'ppe', 'Psat0s2633g0080' => 'psa', 'Psat0s3396g0080' => 'psa', 'Psat0s3396g0200' => 'psa', 'Psat3g139080' => 'psa', 'Psat5g285080' => 'psa', 'Psat6g157760' => 'psa', 'Psat6g208440' => 'psa', 'Psat7g215320' => 'psa', 'Psat7g215400' => 'psa', 'Psat7g235600' => 'psa', 'Psat7g235760' => 'psa', 'PSO063G4603' => 'pso', 'PSO210G0182' => 'pso', 'PSO210G0196' => 'pso', 'PSO339G0394' => 'pso', 'PSO339G4127' => 'pso', 'PSO513G0064' => 'pso', 'PSO761G0079' => 'pso', 'QL01p031003' => 'qlo', 'QL01p031078' => 'qlo', 'QL06p003004' => 'qlo', 'QL07p048731' => 'qlo', 'QL09p037427' => 'qlo', 'RcHm_v2.0_Chr3g0466361' => 'rch', 'RcHm_v2.0_Chr3g0485571' => 'rch', 'RcHm_v2.0_Chr4g0416551' => 'rch', 'RcHm_v2.0_Chr5g0065831' => 'rch', 'Rhsim01G0230500' => 'rsi', 'Rhsim05G0194000' => 'rsi', 'Rhsim08G0250400' => 'rsi', 'Sabra02G0131000' => 'sbr', 'Sabra06G0066300' => 'sbr', 'Sabra08G0115500' => 'sbr', 'Sabra09G0023900' => 'sbr', 'Sabra10G0054000' => 'sbr', 'Sabra14G0081500' => 'sbr', 'Sabra16G0147100' => 'sbr', 'SalBow2G2957' => 'sbo', 'SalBow4G3320' => 'sbo', 'SalBow8G1894' => 'sbo', 'Sc07g0007950' => 'sci', 'Sc12g0001360' => 'sci', 'Sc13g0004330' => 'sci', 'Sc20g0005010' => 'sci', 'Sed0000361' => 'sed', 'Sed0001706' => 'sed', 'Sed0002422' => 'sed', 'Sed0004029' => 'sed', 'Sed0004602' => 'sed', 'Sed0004943' => 'sed', 'Sed0008646' => 'sed', 'Sed0023313' => 'sed', 'Sed0024843' => 'sed', 'SEGI_00081' => 'sgi', 'SEGI_00947' => 'sgi', 'SEGI_04046' => 'sgi', 'SEGI_06880' => 'sgi', 'SEGI_09736' => 'sgi', 'SEGI_12741' => 'sgi', 'SEGI_14530' => 'sgi', 'SEGI_20705' => 'sgi', 'SEGI_26088' => 'sgi', 'SEGI_28323' => 'sgi', 'SEGI_33343' => 'sgi', 'SGA_v2.0_scaffold126G33775' => 'sas', 'SGA_v2.0_scaffold2G01337' => 'sas', 'SGA_v2.0_scaffold38G15006' => 'sas', 'SGA_v2.0_scaffold39G15264' => 'sas', 'SGA_v2.0_scaffold453G51880' => 'sas', 'SHI12696' => 'shi', 'SMO367G1096' => 'smo', 'Solyc01g068630.3' => 'sly', 'Solyc05g011880.3' => 'sly', 'Solyc06g076300.3' => 'sly', 'Solyc09g010940.4' => 'sly', 'Solyc09g075890.3' => 'sly', 'Sopen01g030560' => 'spe', 'Sopen05g006630' => 'spe', 'Sopen06g032720' => 'spe', 'Sopen09g005660' => 'spe', 'Sopen09g030690' => 'spe', 'Sp4g14540' => 'spa', 'Sp4g20030' => 'spa', 'Sp5g01320' => 'spa', 'Sp6g21170' => 'spa', 'Sp6g21180' => 'spa', 'Sp6g21190' => 'spa', 'Sp6g40220' => 'spa', 'TAR362G0122' => 'tar', 'TAR362G1338' => 'tar', 'TAR369G0590' => 'tar', 'TAR371G0824' => 'tar', 'TAR622G1429' => 'tar', 'TAR623G0734' => 'tar', 'TAR625G0441' => 'tar', 'TAR629G0976' => 'tar', 'TAR633G1195' => 'tar', 'TAR636G2660' => 'tar', 'THA.LOC104799440' => 'tha', 'THA.LOC104800966' => 'tha', 'THA.LOC104806559' => 'tha', 'THA.LOC104810765' => 'tha', 'THA.LOC104816266' => 'tha', 'THA.LOC104817419' => 'tha', 'THA.LOC104827021' => 'tha', 'Thecc.01G327400' => 'tca', 'Thecc.04G229200' => 'tca', 'Thecc.05G037400' => 'tca', 'Thecc.09G318600' => 'tca', 'Thecc.09G318700' => 'tca', 'Thhalv10006238m.g' => 'esa', 'Thhalv10014321m.g' => 'esa', 'Thhalv10014335m.g' => 'esa', 'Thhalv10015826m.g' => 'esa', 'Thhalv10017107m.g' => 'esa', 'Thhalv10017180m.g' => 'esa', 'Thhalv10029339m.g' => 'esa', 'TPR.G1699' => 'tpr', 'TPR.G23609' => 'tpr', 'TPR.G3081' => 'tpr', 'TPR.G40397' => 'tpr', 'TPR.G5522' => 'tpr', 'TPR.G5618' => 'tpr', 'TPR.G5626' => 'tpr', 'TWI09G1632' => 'twi', 'TWI23G1230' => 'twi', 'TWI53G1064' => 'twi', 'TWI59G0751' => 'twi', 'TWI74G0947' => 'twi', 'TWI77G0337' => 'twi', 'TWI79G1254' => 'twi', 'unitig_0.g2341' => 'ugi', 'unitig_26.g10006' => 'ugi', 'unitig_26.g10008' => 'ugi', 'unitig_26.g9192' => 'ugi', 'vmacro14547' => 'vma', 'vmacro15333' => 'vma', 'vmacro18743' => 'vma', 'vmacro20166' => 'vma', 'VMungo0331G0523' => 'vmu', 'VMungo0331G1202' => 'vmu', 'VMungo0720G1228' => 'vmu', 'VMungo0720G1514' => 'vmu', 'VMungo1080G0169' => 'vmu', 'VMungo1127G1475' => 'vmu', 'VMungo1383G1208' => 'vmu', 'VMungo1383G1698' => 'vmu', 'Zm00001eb012270' => 'zma', 'Zm00001eb054100' => 'zma', 'Zm00001eb063350' => 'zma', 'Zm00001eb328560' => 'zma', 'Zm00001eb342820' => 'zma', 'Zm00001eb362210' => 'zma', 'Zm00001eb397730' => 'zma', 'Zm00001eb399750' => 'zma' ) $gf_id = 'HOM05D000959' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000959' ) $data_identifier = 'HOM05D000959' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 5, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 5, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 10, 'mbi' => (int) 3, 'mco' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 2, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 3, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 11, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399750' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000959', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '622', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p07100' => 'bna', 'A03p11720' => 'bna', 'A05p08300' => 'bna', 'A05p13380' => 'bna', 'A09p54130' => 'bna', 'A10p16690' => 'bna', 'A10p16700' => 'bna', 'A10p33390' => 'bna', 'Aa31LG10G16020' => 'aar', 'Aa31LG1G11810' => 'aar', 'Aa31LG1G11830' => 'aar', 'Aa31LG1G22510' => 'aar', 'Aa31LG5G4890' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5793' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2310' => 'aag', 'Actinidia08499' => 'ach', 'Actinidia11262' => 'ach', 'Actinidia23926' => 'ach', 'Actinidia34420' => 'ach', 'Actinidia36970' => 'ach', 'Ah.02g111220' => 'amhyb', 'Ah.15g097750' => 'amhyb', 'AL4G27500' => 'aly', 'AL6G11470' => 'aly', 'AL8G35950' => 'aly', 'AL8G35960' => 'aly', 'AL8G35970' => 'aly', 'Aqoxy1G00912' => 'aox', 'Aqoxy2G02253' => 'aox', 'Aqoxy2G02411' => 'aox', 'Aqoxy5G00485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BZ66YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K8ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM4FUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6BF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HFV7XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25JBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0YNNV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MAKK6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P70IT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP2Z6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V61LZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YWP64R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3S9AI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7PGHH' => 'arhy', 'AT2G32150' => 'ath', 'AT3G62040' => 'ath', 'AT5G02230' => 'ath', 'AT5G59480' => 'ath', 'AT5G59490' => 'ath', 'ATR0332G060' => 'atr', 'ATR0559G190' => 'atr', 'ATR0693G294' => 'atr', 'Atru.chr3.3975' => 'acertr', 'Atru.chr3.3976' => 'acertr', 'Atru.chr3.3977' => 'acertr', 'Atru.chr4.2498' => 'acertr', 'Atru.chr5.838' => 'acertr', 'Atru.chr8.1990' => 'acertr', 'Atru.chr8.1991' => 'acertr', 'Atru.chr8.1992' => 'acertr', 'AUR62001759' => 'cqu', 'AUR62009545' => 'cqu', 'AUR62010474' => 'cqu', 'AUR62025820' => 'cqu', 'AUR62030422' => 'cqu', 'AUR62033605' => 'cqu', 'AUR62038615' => 'cqu', 'AUR62041347' => 'cqu', 'BcaB01g04574' => 'bca', 'BcaB02g09263' => 'bca', 'BcaB02g10453' => 'bca', 'BcaB05g22513' => 'bca', 'BcaB08g36253' => 'bca', 'BcaB08g36254' => 'bca', 'BcaC01g06519' => 'bca', 'BcaC02g11889' => 'bca', 'BcaC03g14010' => 'bca', 'BcaC03g18439' => 'bca', 'BcaC04g19765' => 'bca', 'BcaC09g48432' => 'bca', 'BcaNung07302' => 'bca', 'BolC2t06040H' => 'bol', 'BolC2t07346H' => 'bol', 'BolC3t13817H' => 'bol', 'BolC4t22625H' => 'bol', 'BolC4t23297H' => 'bol', 'BolC8t51278H' => 'bol', 'BolC9t58050H' => 'bol', 'BolC9t58051H' => 'bol', 'BolC9t60163H' => 'bol', 'BraA02t04712Z' => 'bra', 'BraA02t05791Z' => 'bra', 'BraA03t10483Z' => 'bra', 'BraA05t19795Z' => 'bra', 'BraA05t20276Z' => 'bra', 'BraA09t40827Z' => 'bra', 'BraA10t43750Z' => 'bra', 'BraA10t43751Z' => 'bra', 'BraA10t45370Z' => 'bra', 'C02p00400' => 'bna', 'C02p12460' => 'bna', 'C03p13680' => 'bna', 'C04p10270' => 'bna', 'C04p17500' => 'bna', 'C08p37010' => 'bna', 'C09p51880' => 'bna', 'C09p51890' => 'bna', 'C09p74300' => 'bna', 'CAN.G179.26' => 'can', 'CAN.G3384.1' => 'can', 'CAN.G394.68' => 'can', 'CAN.G907.13' => 'can', 'CANSAT11G0012' => 'cansat', 'CANSAT25G1586' => 'cansat', 'CANSAT35G0735' => 'cansat', 'CANSAT54G0556' => 'cansat', 'CANSAT64G0356' => 'cansat', 'CANSAT78G2042' => 'cansat', 'CARHR125920' => 'chi', 'CARHR131910' => 'chi', 'CARHR172390' => 'chi', 'CARHR211140' => 'chi', 'CARHR285850' => 'chi', 'CARHR285860' => 'chi', 'Carub.0004s1347' => 'cru', 'Carub.0004s1960' => 'cru', 'Carub.0005s2880' => 'cru', 'Carub.0006s0107' => 'cru', 'Carub.0008s2015' => 'cru', 'Carub.0008s2016' => 'cru', 'Carub.0008s2017' => 'cru', 'Ca_01315_v3' => 'car', 'Ca_05063_v3' => 'car', 'Ca_10231_v3' => 'car', 'Ca_10913_v3' => 'car', 'Ca_19156_v3' => 'car', 'Ca_23644_v3' => 'car', 'Ca_26735_v3' => 'car', 'Cc01_g13130' => 'ccan', 'Cc02_g21690' => 'ccan', 'Cc03_g03600' => 'ccan', 'Cc06_g02510' => 'ccan', 'CDE02G1265' => 'cde', 'CDE05G0415' => 'cde', 'CDE08G1082' => 'cde', 'Cfa005780' => 'cfa', 'Cfa011522' => 'cfa', 'Cfa011523' => 'cfa', 'Cfa015627' => 'cfa', 'Cfa017359' => 'cfa', 'Ciclev10005687m.g' => 'ccl', 'Ciclev10012173m.g' => 'ccl', 'Ciclev10021621m.g' => 'ccl', 'Ciclev10028968m.g' => 'ccl', 'Ciclev10029907m.g' => 'ccl', 'CiPaw.01G164800' => 'cil', 'CiPaw.07G083700' => 'cil', 'CiPaw.07G127000' => 'cil', 'CiPaw.07G136900' => 'cil', 'CiPaw.08G081700' => 'cil', 'CiPaw.09G194600' => 'cil', 'CiPaw.10G146500' => 'cil', 'CiPaw.13G091500' => 'cil', 'CiPaw.13G091600' => 'cil', 'ClCG00G003390' => 'cla', 'ClCG01G007220' => 'cla', 'ClCG03G001370' => 'cla', 'ClCG04G008100' => 'cla', 'ClCG06G006110' => 'cla', 'ClCG06G006130' => 'cla', 'ClCG10G021210' => 'cla', 'COL.COLO4_07648' => 'col', 'COL.COLO4_07650' => 'col', 'COL.COLO4_07651' => 'col', 'COL.COLO4_14780' => 'col', 'COL.COLO4_18546' => 'col', 'COL.COLO4_18547' => 'col', 'COL.COLO4_23103' => 'col', 'COL.COLO4_30419' => 'col', 'COL.COLO4_34232' => 'col', 'Cpa.g.sc169.20' => 'cpa', 'Cpa.g.sc57.45' => 'cpa', 'Cpa.g.sc58.124' => 'cpa', 'Cpa.g.sc58.125' => 'cpa', 'Cpa.g.sc81.118' => 'cpa', 'Cpa.g.sc81.119' => 'cpa', 'Cre12.g524700' => 'cre', 'CsaV3_1G034430' => 'csa', 'CsaV3_1G034440' => 'csa', 'CsaV3_1G034450' => 'csa', 'CsaV3_3G034830' => 'csa', 'CsaV3_4G025090' => 'csa', 'CsaV3_5G018660' => 'csa', 'CsaV3_6G038160' => 'csa', 'CSS0003447' => 'camsi', 'CSS0017840' => 'camsi', 'CSS0019260' => 'camsi', 'CSS0040375' => 'camsi', 'CSS0042533' => 'camsi', 'DCAR_005960' => 'dca', 'DCAR_012104' => 'dca', 'DCAR_012105' => 'dca', 'DCAR_012293' => 'dca', 'DCAR_015632' => 'dca', 'DCAR_024602' => 'dca', 'DCAR_028752' => 'dca', 'Dinv06261' => 'din', 'Dinv13982' => 'din', 'Dinv17029' => 'din', 'Dinv18463' => 'din', 'Dinv33181' => 'din', 'Dinv35585' => 'din', 'Dinv37161' => 'din', 'Dinv42977' => 'din', 'Dinv43122' => 'din', 'Dinv44517' => 'din', 'Duzib093G0256' => 'dzi', 'Duzib106G1254' => 'dzi', 'Duzib128G1789' => 'dzi', 'Duzib133G0633' => 'dzi', 'Duzib138G0510' => 'dzi', 'Duzib150G1084' => 'dzi', 'Duzib168G0488' => 'dzi', 'Duzib168G1523' => 'dzi', 'Duzib170G0133' => 'dzi', 'ECA234G1433' => 'eca', 'ECA236G1432' => 'eca', 'ECA236G2256' => 'eca', 'ECA236G2365' => 'eca', 'ECA236G4830' => 'eca', 'ECA248G1505' => 'eca', 'EL10Ac3g06431' => 'bvu', 'EL10Ac5g12577' => 'bvu', 'EL10Ac6g13533' => 'bvu', 'EL10Ac7g16045' => 'bvu', 'Eucgr.A01281' => 'egr', 'Eucgr.B02326' => 'egr', 'Eucgr.H03532' => 'egr', 'Eucgr.K00553' => 'egr', 'Eucgr.K03116' => 'egr', 'FAN02G3963' => 'fan', 'FAN05G0438' => 'fan', 'FAN09G2434' => 'fan', 'FAN12G3984' => 'fan', 'FAN14G0798' => 'fan', 'FAN17G0652' => 'fan', 'FAN19G1988' => 'fan', 'FAN22G0632' => 'fan', 'FAN23G0387' => 'fan', 'FAN26G1323' => 'fan', 'FAN28G0666' => 'fan', 'FvH4_1g26080' => 'fve', 'FvH4_3g36780' => 'fve', 'FvH4_4g15270' => 'fve', 'FvH4_6g13490' => 'fve', 'Glyma.01G098700' => 'gma', 'Glyma.03G065900' => 'gma', 'Glyma.03G073754' => 'gma', 'Glyma.03G073758' => 'gma', 'Glyma.03G083200' => 'gma', 'Glyma.03G225500' => 'gma', 'Glyma.05G037766' => 'gma', 'Glyma.07G133500' => 'gma', 'Glyma.10G139400' => 'gma', 'Glyma.10G248900' => 'gma', 'Glyma.11G137800' => 'gma', 'Glyma.12G061300' => 'gma', 'Glyma.13G337900' => 'gma', 'Glyma.15G036600' => 'gma', 'Glyma.18G182800' => 'gma', 'Glyma.19G222500' => 'gma', 'Glyma.20G144800' => 'gma', 'Gohir.A01G222000' => 'ghi', 'Gohir.A03G044000' => 'ghi', 'Gohir.A03G044100' => 'ghi', 'Gohir.A04G083100' => 'ghi', 'Gohir.A07G127200' => 'ghi', 'Gohir.A07G132400' => 'ghi', 'Gohir.A08G000700' => 'ghi', 'Gohir.A11G327300' => 'ghi', 'Gohir.D01G211500' => 'ghi', 'Gohir.D03G123400' => 'ghi', 'Gohir.D03G123500' => 'ghi', 'Gohir.D04G121800' => 'ghi', 'Gohir.D07G131500' => 'ghi', 'Gohir.D07G136600' => 'ghi', 'Gohir.D08G011600' => 'ghi', 'Gohir.D11G346200' => 'ghi', 'Gorai.001G142800' => 'gra', 'Gorai.001G148700' => 'gra', 'Gorai.002G257300' => 'gra', 'Gorai.003G130000' => 'gra', 'Gorai.003G130100' => 'gra', 'Gorai.004G005300' => 'gra', 'Gorai.007G376500' => 'gra', 'Gorai.012G104700' => 'gra', 'GSVIVG01017946001' => 'vvi', 'GSVIVG01024928001' => 'vvi', 'GSVIVG01028227001' => 'vvi', 'GSVIVG01034151001' => 'vvi', 'HanXRQChr05g0135031' => 'han', 'HanXRQChr05g0135041' => 'han', 'HanXRQChr05g0140021' => 'han', 'HanXRQChr06g0178981' => 'han', 'HanXRQChr07g0188251' => 'han', 'HanXRQChr08g0235311' => 'han', 'HanXRQChr09g0271011' => 'han', 'HanXRQChr10g0293321' => 'han', 'HanXRQChr13g0388171' => 'han', 'Haze_00916' => 'cav', 'Haze_05063' => 'cav', 'Haze_20814' => 'cav', 'Haze_24128' => 'cav', 'Hma1.2p1_0745F.1_g212010' => 'hma', 'Hma1.2p1_0757F.1_g213260' => 'hma', 'Hma1.2p1_0936F.1_g238840' => 'hma', 'Hma1.2p1_1735F.1_g299890' => 'hma', 'Hma1.2p1_1861F.1_g305685' => 'hma', 'HPP92_003397' => 'vpl', 'HPP92_012597' => 'vpl', 'HPP92_015520' => 'vpl', 'HPP92_015539' => 'vpl', 'HPP92_020373' => 'vpl', 'Hund04938' => 'sun', 'Hund10677' => 'sun', 'Hund11033' => 'sun', 'Hund12155' => 'sun', 'Lalb_Chr01g0022551' => 'lal', 'Lalb_Chr03g0042341' => 'lal', 'Lalb_Chr07g0192931' => 'lal', 'Lalb_Chr12g0209551' => 'lal', 'Lalb_Chr19g0125251' => 'lal', 'Lalb_Chr19g0137891' => 'lal', 'Lalb_Chr21g0304641' => 'lal', 'Lalb_Chr21g0309881' => 'lal', 'Lj1A5T12' => 'lonja', 'Lj1C148G10' => 'lonja', 'Lj2A93T83' => 'lonja', 'Lj3A738G68' => 'lonja', 'Lj3C966T1' => 'lonja', 'Lj3g0018958' => 'lja', 'Lj3g0021831' => 'lja', 'Lj3g0025443' => 'lja', 'Lj4g0026809' => 'lja', 'Lj5g0012558' => 'lja', 'Lj5g0021586' => 'lja', 'Lsat_1_v5_gn_5_156840' => 'lsa', 'Lsat_1_v5_gn_8_73460' => 'lsa', 'Lsat_1_v5_gn_8_73481' => 'lsa', 'Lsat_1_v5_gn_9_31601' => 'lsa', 'Lsat_1_v5_gn_9_77320' => 'lsa', 'Manes.01G171300' => 'mes', 'Manes.01G171400' => 'mes', 'Manes.01G236100' => 'mes', 'Manes.02G130500' => 'mes', 'Manes.02G130600' => 'mes', 'Manes.03G180200' => 'mes', 'Manes.05G007000' => 'mes', 'Manes.08G084400' => 'mes', 'Manes.09G092600' => 'mes', 'Manes.15G027900' => 'mes', 'MBI04_g40948_MAGBIO' => 'mbi', 'MBI14_g12123_MAGBIO' => 'mbi', 'MBI18_g28915_MAGBIO' => 'mbi', 'MCO09G053' => 'mco', 'MCO11G782' => 'mco', 'MCO15G215' => 'mco', 'MD03G1088500' => 'mdo', 'MD03G1088600' => 'mdo', 'MD04G1130800' => 'mdo', 'MD09G1291700' => 'mdo', 'MD11G1097500' => 'mdo', 'MD11G1097600' => 'mdo', 'MD12G1143900' => 'mdo', 'MD13G1191400' => 'mdo', 'MD16G1191500' => 'mdo', 'Medtr1g085570' => 'mtr', 'Medtr1g104610' => 'mtr', 'Medtr2g097520' => 'mtr', 'Medtr4g021800' => 'mtr', 'Medtr4g021825' => 'mtr', 'Medtr4g064270' => 'mtr', 'Medtr4g064380' => 'mtr', 'Medtr7g062150' => 'mtr', 'MELO3C003138.2' => 'cme', 'MELO3C005187.2' => 'cme', 'MELO3C009252.2' => 'cme', 'MELO3C014481.2' => 'cme', 'MELO3C020616.2' => 'cme', 'MELO3C020617.2' => 'cme', 'MELO3C020618.2' => 'cme', 'Migut.G00328' => 'egut', 'Migut.J00320' => 'egut', 'Migut.L01000' => 'egut', 'Migut.L01953' => 'egut', 'MSTRG.10253' => 'ama', 'MSTRG.19077' => 'ama', 'MSTRG.26780' => 'ama', 'MSTRG.4023' => 'ama', 'MSTRG.5655' => 'ama', 'MSTRG.9992' => 'ama', 'Nitab4.5_0000043g0310' => 'nta', 'Nitab4.5_0000463g0080' => 'nta', 'Nitab4.5_0000705g0170' => 'nta', 'Nitab4.5_0001326g0060' => 'nta', 'Nitab4.5_0001628g0030' => 'nta', 'Nitab4.5_0002103g0110' => 'nta', 'Nitab4.5_0002946g0030' => 'nta', 'Nitab4.5_0004639g0030' => 'nta', 'Nn2g11149' => 'nnu', 'Nn2g13389' => 'nnu', 'Nn4g25326' => 'nnu', 'Nn4g26290' => 'nnu', 'Nn5g29865' => 'nnu', 'Oeu004163.1' => 'oeu', 'Oeu006901.1' => 'oeu', 'Oeu010096.1' => 'oeu', 'Oeu024340.1' => 'oeu', 'Oeu048369.1' => 'oeu', 'Os01g0973000' => 'osa', 'Os03g0273800' => 'osa', 'Os03g0701200' => 'osa', 'Os03g0834050' => 'osa', 'Os07g0634400' => 'osa', 'Peaxi162Scf00092g01414' => 'pax', 'Peaxi162Scf00165g00818' => 'pax', 'Peaxi162Scf00309g00516' => 'pax', 'Peaxi162Scf00774g00218' => 'pax', 'PGR004G1824' => 'pgr', 'PGR004G2606' => 'pgr', 'PGR031G2716' => 'pgr', 'PGR102G2460' => 'pgr', 'PGR142G2599' => 'pgr', 'PGSC0003DMG400000843' => 'stu', 'PGSC0003DMG400008829' => 'stu', 'PGSC0003DMG400030418' => 'stu', 'PGSC0003DMG400031834' => 'stu', 'PGSC0003DMG401028300' => 'stu', 'PGSC0003DMG402028300' => 'stu', 'Phvul.001G219300' => 'pvu', 'Phvul.007G056000' => 'pvu', 'Phvul.007G208000' => 'pvu', 'Phvul.008G119500' => 'pvu', 'Phvul.010G011200' => 'pvu', 'Phvul.010G014800' => 'pvu', 'Phvul.011G062900' => 'pvu', 'Phvul.L007043' => 'pvu', 'Potri.001G242300' => 'ptr', 'Potri.002G185300' => 'ptr', 'Potri.006G086900' => 'ptr', 'Potri.008G151700' => 'ptr', 'Potri.009G033500' => 'ptr', 'Potri.010G089300' => 'ptr', 'Potri.014G110800' => 'ptr', 'Pp3c27_8130' => 'ppa', 'Pp3c6_27410' => 'ppa', 'PRCOL_00001659' => 'pco', 'PRCOL_00001927' => 'pco', 'PRCOL_00003649' => 'pco', 'Prupe.1G011600' => 'ppe', 'Prupe.3G000800' => 'ppe', 'Prupe.3G001100' => 'ppe', 'Prupe.6G072700' => 'ppe', 'Prupe.6G072800' => 'ppe', 'Prupe.6G257300' => 'ppe', 'Prupe.8G033000' => 'ppe', 'Psat0s2633g0080' => 'psa', 'Psat0s3396g0080' => 'psa', 'Psat0s3396g0200' => 'psa', 'Psat3g139080' => 'psa', 'Psat5g285080' => 'psa', 'Psat6g157760' => 'psa', 'Psat6g208440' => 'psa', 'Psat7g215320' => 'psa', 'Psat7g215400' => 'psa', 'Psat7g235600' => 'psa', 'Psat7g235760' => 'psa', 'PSO063G4603' => 'pso', 'PSO210G0182' => 'pso', 'PSO210G0196' => 'pso', 'PSO339G0394' => 'pso', 'PSO339G4127' => 'pso', 'PSO513G0064' => 'pso', 'PSO761G0079' => 'pso', 'QL01p031003' => 'qlo', 'QL01p031078' => 'qlo', 'QL06p003004' => 'qlo', 'QL07p048731' => 'qlo', 'QL09p037427' => 'qlo', 'RcHm_v2.0_Chr3g0466361' => 'rch', 'RcHm_v2.0_Chr3g0485571' => 'rch', 'RcHm_v2.0_Chr4g0416551' => 'rch', 'RcHm_v2.0_Chr5g0065831' => 'rch', 'Rhsim01G0230500' => 'rsi', 'Rhsim05G0194000' => 'rsi', 'Rhsim08G0250400' => 'rsi', 'Sabra02G0131000' => 'sbr', 'Sabra06G0066300' => 'sbr', 'Sabra08G0115500' => 'sbr', 'Sabra09G0023900' => 'sbr', 'Sabra10G0054000' => 'sbr', 'Sabra14G0081500' => 'sbr', 'Sabra16G0147100' => 'sbr', 'SalBow2G2957' => 'sbo', 'SalBow4G3320' => 'sbo', 'SalBow8G1894' => 'sbo', 'Sc07g0007950' => 'sci', 'Sc12g0001360' => 'sci', 'Sc13g0004330' => 'sci', 'Sc20g0005010' => 'sci', 'Sed0000361' => 'sed', 'Sed0001706' => 'sed', 'Sed0002422' => 'sed', 'Sed0004029' => 'sed', 'Sed0004602' => 'sed', 'Sed0004943' => 'sed', 'Sed0008646' => 'sed', 'Sed0023313' => 'sed', 'Sed0024843' => 'sed', 'SEGI_00081' => 'sgi', 'SEGI_00947' => 'sgi', 'SEGI_04046' => 'sgi', 'SEGI_06880' => 'sgi', 'SEGI_09736' => 'sgi', 'SEGI_12741' => 'sgi', 'SEGI_14530' => 'sgi', 'SEGI_20705' => 'sgi', 'SEGI_26088' => 'sgi', 'SEGI_28323' => 'sgi', 'SEGI_33343' => 'sgi', 'SGA_v2.0_scaffold126G33775' => 'sas', 'SGA_v2.0_scaffold2G01337' => 'sas', 'SGA_v2.0_scaffold38G15006' => 'sas', 'SGA_v2.0_scaffold39G15264' => 'sas', 'SGA_v2.0_scaffold453G51880' => 'sas', 'SHI12696' => 'shi', 'SMO367G1096' => 'smo', 'Solyc01g068630.3' => 'sly', 'Solyc05g011880.3' => 'sly', 'Solyc06g076300.3' => 'sly', 'Solyc09g010940.4' => 'sly', 'Solyc09g075890.3' => 'sly', 'Sopen01g030560' => 'spe', 'Sopen05g006630' => 'spe', 'Sopen06g032720' => 'spe', 'Sopen09g005660' => 'spe', 'Sopen09g030690' => 'spe', 'Sp4g14540' => 'spa', 'Sp4g20030' => 'spa', 'Sp5g01320' => 'spa', 'Sp6g21170' => 'spa', 'Sp6g21180' => 'spa', 'Sp6g21190' => 'spa', 'Sp6g40220' => 'spa', 'TAR362G0122' => 'tar', 'TAR362G1338' => 'tar', 'TAR369G0590' => 'tar', 'TAR371G0824' => 'tar', 'TAR622G1429' => 'tar', 'TAR623G0734' => 'tar', 'TAR625G0441' => 'tar', 'TAR629G0976' => 'tar', 'TAR633G1195' => 'tar', 'TAR636G2660' => 'tar', 'THA.LOC104799440' => 'tha', 'THA.LOC104800966' => 'tha', 'THA.LOC104806559' => 'tha', 'THA.LOC104810765' => 'tha', 'THA.LOC104816266' => 'tha', 'THA.LOC104817419' => 'tha', 'THA.LOC104827021' => 'tha', 'Thecc.01G327400' => 'tca', 'Thecc.04G229200' => 'tca', 'Thecc.05G037400' => 'tca', 'Thecc.09G318600' => 'tca', 'Thecc.09G318700' => 'tca', 'Thhalv10006238m.g' => 'esa', 'Thhalv10014321m.g' => 'esa', 'Thhalv10014335m.g' => 'esa', 'Thhalv10015826m.g' => 'esa', 'Thhalv10017107m.g' => 'esa', 'Thhalv10017180m.g' => 'esa', 'Thhalv10029339m.g' => 'esa', 'TPR.G1699' => 'tpr', 'TPR.G23609' => 'tpr', 'TPR.G3081' => 'tpr', 'TPR.G40397' => 'tpr', 'TPR.G5522' => 'tpr', 'TPR.G5618' => 'tpr', 'TPR.G5626' => 'tpr', 'TWI09G1632' => 'twi', 'TWI23G1230' => 'twi', 'TWI53G1064' => 'twi', 'TWI59G0751' => 'twi', 'TWI74G0947' => 'twi', 'TWI77G0337' => 'twi', 'TWI79G1254' => 'twi', 'unitig_0.g2341' => 'ugi', 'unitig_26.g10006' => 'ugi', 'unitig_26.g10008' => 'ugi', 'unitig_26.g9192' => 'ugi', 'vmacro14547' => 'vma', 'vmacro15333' => 'vma', 'vmacro18743' => 'vma', 'vmacro20166' => 'vma', 'VMungo0331G0523' => 'vmu', 'VMungo0331G1202' => 'vmu', 'VMungo0720G1228' => 'vmu', 'VMungo0720G1514' => 'vmu', 'VMungo1080G0169' => 'vmu', 'VMungo1127G1475' => 'vmu', 'VMungo1383G1208' => 'vmu', 'VMungo1383G1698' => 'vmu', 'Zm00001eb012270' => 'zma', 'Zm00001eb054100' => 'zma', 'Zm00001eb063350' => 'zma', 'Zm00001eb328560' => 'zma', 'Zm00001eb342820' => 'zma', 'Zm00001eb362210' => 'zma', 'Zm00001eb397730' => 'zma', 'Zm00001eb399750' => 'zma' ), 'gf_id' => 'HOM05D000959', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000959' ), 'data_identifier' => 'HOM05D000959', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000959', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '622', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p07100' => 'bna', 'A03p11720' => 'bna', 'A05p08300' => 'bna', 'A05p13380' => 'bna', 'A09p54130' => 'bna', 'A10p16690' => 'bna', 'A10p16700' => 'bna', 'A10p33390' => 'bna', 'Aa31LG10G16020' => 'aar', 'Aa31LG1G11810' => 'aar', 'Aa31LG1G11830' => 'aar', 'Aa31LG1G22510' => 'aar', 'Aa31LG5G4890' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5793' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2310' => 'aag', 'Actinidia08499' => 'ach', 'Actinidia11262' => 'ach', 'Actinidia23926' => 'ach', 'Actinidia34420' => 'ach', 'Actinidia36970' => 'ach', 'Ah.02g111220' => 'amhyb', 'Ah.15g097750' => 'amhyb', 'AL4G27500' => 'aly', 'AL6G11470' => 'aly', 'AL8G35950' => 'aly', 'AL8G35960' => 'aly', 'AL8G35970' => 'aly', 'Aqoxy1G00912' => 'aox', 'Aqoxy2G02253' => 'aox', 'Aqoxy2G02411' => 'aox', 'Aqoxy5G00485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BZ66YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K8ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM4FUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6BF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HFV7XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25JBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0YNNV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MAKK6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P70IT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP2Z6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V61LZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YWP64R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3S9AI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7PGHH' => 'arhy', 'AT2G32150' => 'ath', 'AT3G62040' => 'ath', 'AT5G02230' => 'ath', 'AT5G59480' => 'ath', 'AT5G59490' => 'ath', 'ATR0332G060' => 'atr', 'ATR0559G190' => 'atr', 'ATR0693G294' => 'atr', 'Atru.chr3.3975' => 'acertr', 'Atru.chr3.3976' => 'acertr', 'Atru.chr3.3977' => 'acertr', 'Atru.chr4.2498' => 'acertr', 'Atru.chr5.838' => 'acertr', 'Atru.chr8.1990' => 'acertr', 'Atru.chr8.1991' => 'acertr', 'Atru.chr8.1992' => 'acertr', 'AUR62001759' => 'cqu', 'AUR62009545' => 'cqu', 'AUR62010474' => 'cqu', 'AUR62025820' => 'cqu', 'AUR62030422' => 'cqu', 'AUR62033605' => 'cqu', 'AUR62038615' => 'cqu', 'AUR62041347' => 'cqu', 'BcaB01g04574' => 'bca', 'BcaB02g09263' => 'bca', 'BcaB02g10453' => 'bca', 'BcaB05g22513' => 'bca', 'BcaB08g36253' => 'bca', 'BcaB08g36254' => 'bca', 'BcaC01g06519' => 'bca', 'BcaC02g11889' => 'bca', 'BcaC03g14010' => 'bca', 'BcaC03g18439' => 'bca', 'BcaC04g19765' => 'bca', 'BcaC09g48432' => 'bca', 'BcaNung07302' => 'bca', 'BolC2t06040H' => 'bol', 'BolC2t07346H' => 'bol', 'BolC3t13817H' => 'bol', 'BolC4t22625H' => 'bol', 'BolC4t23297H' => 'bol', 'BolC8t51278H' => 'bol', 'BolC9t58050H' => 'bol', 'BolC9t58051H' => 'bol', 'BolC9t60163H' => 'bol', 'BraA02t04712Z' => 'bra', 'BraA02t05791Z' => 'bra', 'BraA03t10483Z' => 'bra', 'BraA05t19795Z' => 'bra', 'BraA05t20276Z' => 'bra', 'BraA09t40827Z' => 'bra', 'BraA10t43750Z' => 'bra', 'BraA10t43751Z' => 'bra', 'BraA10t45370Z' => 'bra', 'C02p00400' => 'bna', 'C02p12460' => 'bna', 'C03p13680' => 'bna', 'C04p10270' => 'bna', 'C04p17500' => 'bna', 'C08p37010' => 'bna', 'C09p51880' => 'bna', 'C09p51890' => 'bna', 'C09p74300' => 'bna', 'CAN.G179.26' => 'can', 'CAN.G3384.1' => 'can', 'CAN.G394.68' => 'can', 'CAN.G907.13' => 'can', 'CANSAT11G0012' => 'cansat', 'CANSAT25G1586' => 'cansat', 'CANSAT35G0735' => 'cansat', 'CANSAT54G0556' => 'cansat', 'CANSAT64G0356' => 'cansat', 'CANSAT78G2042' => 'cansat', 'CARHR125920' => 'chi', 'CARHR131910' => 'chi', 'CARHR172390' => 'chi', 'CARHR211140' => 'chi', 'CARHR285850' => 'chi', 'CARHR285860' => 'chi', 'Carub.0004s1347' => 'cru', 'Carub.0004s1960' => 'cru', 'Carub.0005s2880' => 'cru', 'Carub.0006s0107' => 'cru', 'Carub.0008s2015' => 'cru', 'Carub.0008s2016' => 'cru', 'Carub.0008s2017' => 'cru', 'Ca_01315_v3' => 'car', 'Ca_05063_v3' => 'car', 'Ca_10231_v3' => 'car', 'Ca_10913_v3' => 'car', 'Ca_19156_v3' => 'car', 'Ca_23644_v3' => 'car', 'Ca_26735_v3' => 'car', 'Cc01_g13130' => 'ccan', 'Cc02_g21690' => 'ccan', 'Cc03_g03600' => 'ccan', 'Cc06_g02510' => 'ccan', 'CDE02G1265' => 'cde', 'CDE05G0415' => 'cde', 'CDE08G1082' => 'cde', 'Cfa005780' => 'cfa', 'Cfa011522' => 'cfa', 'Cfa011523' => 'cfa', 'Cfa015627' => 'cfa', 'Cfa017359' => 'cfa', 'Ciclev10005687m.g' => 'ccl', 'Ciclev10012173m.g' => 'ccl', 'Ciclev10021621m.g' => 'ccl', 'Ciclev10028968m.g' => 'ccl', 'Ciclev10029907m.g' => 'ccl', 'CiPaw.01G164800' => 'cil', 'CiPaw.07G083700' => 'cil', 'CiPaw.07G127000' => 'cil', 'CiPaw.07G136900' => 'cil', 'CiPaw.08G081700' => 'cil', 'CiPaw.09G194600' => 'cil', 'CiPaw.10G146500' => 'cil', 'CiPaw.13G091500' => 'cil', 'CiPaw.13G091600' => 'cil', 'ClCG00G003390' => 'cla', 'ClCG01G007220' => 'cla', 'ClCG03G001370' => 'cla', 'ClCG04G008100' => 'cla', 'ClCG06G006110' => 'cla', 'ClCG06G006130' => 'cla', 'ClCG10G021210' => 'cla', 'COL.COLO4_07648' => 'col', 'COL.COLO4_07650' => 'col', 'COL.COLO4_07651' => 'col', 'COL.COLO4_14780' => 'col', 'COL.COLO4_18546' => 'col', 'COL.COLO4_18547' => 'col', 'COL.COLO4_23103' => 'col', 'COL.COLO4_30419' => 'col', 'COL.COLO4_34232' => 'col', 'Cpa.g.sc169.20' => 'cpa', 'Cpa.g.sc57.45' => 'cpa', 'Cpa.g.sc58.124' => 'cpa', 'Cpa.g.sc58.125' => 'cpa', 'Cpa.g.sc81.118' => 'cpa', 'Cpa.g.sc81.119' => 'cpa', 'Cre12.g524700' => 'cre', 'CsaV3_1G034430' => 'csa', 'CsaV3_1G034440' => 'csa', 'CsaV3_1G034450' => 'csa', 'CsaV3_3G034830' => 'csa', 'CsaV3_4G025090' => 'csa', 'CsaV3_5G018660' => 'csa', 'CsaV3_6G038160' => 'csa', 'CSS0003447' => 'camsi', 'CSS0017840' => 'camsi', 'CSS0019260' => 'camsi', 'CSS0040375' => 'camsi', 'CSS0042533' => 'camsi', 'DCAR_005960' => 'dca', 'DCAR_012104' => 'dca', 'DCAR_012105' => 'dca', 'DCAR_012293' => 'dca', 'DCAR_015632' => 'dca', 'DCAR_024602' => 'dca', 'DCAR_028752' => 'dca', 'Dinv06261' => 'din', 'Dinv13982' => 'din', 'Dinv17029' => 'din', 'Dinv18463' => 'din', 'Dinv33181' => 'din', 'Dinv35585' => 'din', 'Dinv37161' => 'din', 'Dinv42977' => 'din', 'Dinv43122' => 'din', 'Dinv44517' => 'din', 'Duzib093G0256' => 'dzi', 'Duzib106G1254' => 'dzi', 'Duzib128G1789' => 'dzi', 'Duzib133G0633' => 'dzi', 'Duzib138G0510' => 'dzi', 'Duzib150G1084' => 'dzi', 'Duzib168G0488' => 'dzi', 'Duzib168G1523' => 'dzi', 'Duzib170G0133' => 'dzi', 'ECA234G1433' => 'eca', 'ECA236G1432' => 'eca', 'ECA236G2256' => 'eca', 'ECA236G2365' => 'eca', 'ECA236G4830' => 'eca', 'ECA248G1505' => 'eca', 'EL10Ac3g06431' => 'bvu', 'EL10Ac5g12577' => 'bvu', 'EL10Ac6g13533' => 'bvu', 'EL10Ac7g16045' => 'bvu', 'Eucgr.A01281' => 'egr', 'Eucgr.B02326' => 'egr', 'Eucgr.H03532' => 'egr', 'Eucgr.K00553' => 'egr', 'Eucgr.K03116' => 'egr', 'FAN02G3963' => 'fan', 'FAN05G0438' => 'fan', 'FAN09G2434' => 'fan', 'FAN12G3984' => 'fan', 'FAN14G0798' => 'fan', 'FAN17G0652' => 'fan', 'FAN19G1988' => 'fan', 'FAN22G0632' => 'fan', 'FAN23G0387' => 'fan', 'FAN26G1323' => 'fan', 'FAN28G0666' => 'fan', 'FvH4_1g26080' => 'fve', 'FvH4_3g36780' => 'fve', 'FvH4_4g15270' => 'fve', 'FvH4_6g13490' => 'fve', 'Glyma.01G098700' => 'gma', 'Glyma.03G065900' => 'gma', 'Glyma.03G073754' => 'gma', 'Glyma.03G073758' => 'gma', 'Glyma.03G083200' => 'gma', 'Glyma.03G225500' => 'gma', 'Glyma.05G037766' => 'gma', 'Glyma.07G133500' => 'gma', 'Glyma.10G139400' => 'gma', 'Glyma.10G248900' => 'gma', 'Glyma.11G137800' => 'gma', 'Glyma.12G061300' => 'gma', 'Glyma.13G337900' => 'gma', 'Glyma.15G036600' => 'gma', 'Glyma.18G182800' => 'gma', 'Glyma.19G222500' => 'gma', 'Glyma.20G144800' => 'gma', 'Gohir.A01G222000' => 'ghi', 'Gohir.A03G044000' => 'ghi', 'Gohir.A03G044100' => 'ghi', 'Gohir.A04G083100' => 'ghi', 'Gohir.A07G127200' => 'ghi', 'Gohir.A07G132400' => 'ghi', 'Gohir.A08G000700' => 'ghi', 'Gohir.A11G327300' => 'ghi', 'Gohir.D01G211500' => 'ghi', 'Gohir.D03G123400' => 'ghi', 'Gohir.D03G123500' => 'ghi', 'Gohir.D04G121800' => 'ghi', 'Gohir.D07G131500' => 'ghi', 'Gohir.D07G136600' => 'ghi', 'Gohir.D08G011600' => 'ghi', 'Gohir.D11G346200' => 'ghi', 'Gorai.001G142800' => 'gra', 'Gorai.001G148700' => 'gra', 'Gorai.002G257300' => 'gra', 'Gorai.003G130000' => 'gra', 'Gorai.003G130100' => 'gra', 'Gorai.004G005300' => 'gra', 'Gorai.007G376500' => 'gra', 'Gorai.012G104700' => 'gra', 'GSVIVG01017946001' => 'vvi', 'GSVIVG01024928001' => 'vvi', 'GSVIVG01028227001' => 'vvi', 'GSVIVG01034151001' => 'vvi', 'HanXRQChr05g0135031' => 'han', 'HanXRQChr05g0135041' => 'han', 'HanXRQChr05g0140021' => 'han', 'HanXRQChr06g0178981' => 'han', 'HanXRQChr07g0188251' => 'han', 'HanXRQChr08g0235311' => 'han', 'HanXRQChr09g0271011' => 'han', 'HanXRQChr10g0293321' => 'han', 'HanXRQChr13g0388171' => 'han', 'Haze_00916' => 'cav', 'Haze_05063' => 'cav', 'Haze_20814' => 'cav', 'Haze_24128' => 'cav', 'Hma1.2p1_0745F.1_g212010' => 'hma', 'Hma1.2p1_0757F.1_g213260' => 'hma', 'Hma1.2p1_0936F.1_g238840' => 'hma', 'Hma1.2p1_1735F.1_g299890' => 'hma', 'Hma1.2p1_1861F.1_g305685' => 'hma', 'HPP92_003397' => 'vpl', 'HPP92_012597' => 'vpl', 'HPP92_015520' => 'vpl', 'HPP92_015539' => 'vpl', 'HPP92_020373' => 'vpl', 'Hund04938' => 'sun', 'Hund10677' => 'sun', 'Hund11033' => 'sun', 'Hund12155' => 'sun', 'Lalb_Chr01g0022551' => 'lal', 'Lalb_Chr03g0042341' => 'lal', 'Lalb_Chr07g0192931' => 'lal', 'Lalb_Chr12g0209551' => 'lal', 'Lalb_Chr19g0125251' => 'lal', 'Lalb_Chr19g0137891' => 'lal', 'Lalb_Chr21g0304641' => 'lal', 'Lalb_Chr21g0309881' => 'lal', 'Lj1A5T12' => 'lonja', 'Lj1C148G10' => 'lonja', 'Lj2A93T83' => 'lonja', 'Lj3A738G68' => 'lonja', 'Lj3C966T1' => 'lonja', 'Lj3g0018958' => 'lja', 'Lj3g0021831' => 'lja', 'Lj3g0025443' => 'lja', 'Lj4g0026809' => 'lja', 'Lj5g0012558' => 'lja', 'Lj5g0021586' => 'lja', 'Lsat_1_v5_gn_5_156840' => 'lsa', 'Lsat_1_v5_gn_8_73460' => 'lsa', 'Lsat_1_v5_gn_8_73481' => 'lsa', 'Lsat_1_v5_gn_9_31601' => 'lsa', 'Lsat_1_v5_gn_9_77320' => 'lsa', 'Manes.01G171300' => 'mes', 'Manes.01G171400' => 'mes', 'Manes.01G236100' => 'mes', 'Manes.02G130500' => 'mes', 'Manes.02G130600' => 'mes', 'Manes.03G180200' => 'mes', 'Manes.05G007000' => 'mes', 'Manes.08G084400' => 'mes', 'Manes.09G092600' => 'mes', 'Manes.15G027900' => 'mes', 'MBI04_g40948_MAGBIO' => 'mbi', 'MBI14_g12123_MAGBIO' => 'mbi', 'MBI18_g28915_MAGBIO' => 'mbi', 'MCO09G053' => 'mco', 'MCO11G782' => 'mco', 'MCO15G215' => 'mco', 'MD03G1088500' => 'mdo', 'MD03G1088600' => 'mdo', 'MD04G1130800' => 'mdo', 'MD09G1291700' => 'mdo', 'MD11G1097500' => 'mdo', 'MD11G1097600' => 'mdo', 'MD12G1143900' => 'mdo', 'MD13G1191400' => 'mdo', 'MD16G1191500' => 'mdo', 'Medtr1g085570' => 'mtr', 'Medtr1g104610' => 'mtr', 'Medtr2g097520' => 'mtr', 'Medtr4g021800' => 'mtr', 'Medtr4g021825' => 'mtr', 'Medtr4g064270' => 'mtr', 'Medtr4g064380' => 'mtr', 'Medtr7g062150' => 'mtr', 'MELO3C003138.2' => 'cme', 'MELO3C005187.2' => 'cme', 'MELO3C009252.2' => 'cme', 'MELO3C014481.2' => 'cme', 'MELO3C020616.2' => 'cme', 'MELO3C020617.2' => 'cme', 'MELO3C020618.2' => 'cme', 'Migut.G00328' => 'egut', 'Migut.J00320' => 'egut', 'Migut.L01000' => 'egut', 'Migut.L01953' => 'egut', 'MSTRG.10253' => 'ama', 'MSTRG.19077' => 'ama', 'MSTRG.26780' => 'ama', 'MSTRG.4023' => 'ama', 'MSTRG.5655' => 'ama', 'MSTRG.9992' => 'ama', 'Nitab4.5_0000043g0310' => 'nta', 'Nitab4.5_0000463g0080' => 'nta', 'Nitab4.5_0000705g0170' => 'nta', 'Nitab4.5_0001326g0060' => 'nta', 'Nitab4.5_0001628g0030' => 'nta', 'Nitab4.5_0002103g0110' => 'nta', 'Nitab4.5_0002946g0030' => 'nta', 'Nitab4.5_0004639g0030' => 'nta', 'Nn2g11149' => 'nnu', 'Nn2g13389' => 'nnu', 'Nn4g25326' => 'nnu', 'Nn4g26290' => 'nnu', 'Nn5g29865' => 'nnu', 'Oeu004163.1' => 'oeu', 'Oeu006901.1' => 'oeu', 'Oeu010096.1' => 'oeu', 'Oeu024340.1' => 'oeu', 'Oeu048369.1' => 'oeu', 'Os01g0973000' => 'osa', 'Os03g0273800' => 'osa', 'Os03g0701200' => 'osa', 'Os03g0834050' => 'osa', 'Os07g0634400' => 'osa', 'Peaxi162Scf00092g01414' => 'pax', 'Peaxi162Scf00165g00818' => 'pax', 'Peaxi162Scf00309g00516' => 'pax', 'Peaxi162Scf00774g00218' => 'pax', 'PGR004G1824' => 'pgr', 'PGR004G2606' => 'pgr', 'PGR031G2716' => 'pgr', 'PGR102G2460' => 'pgr', 'PGR142G2599' => 'pgr', 'PGSC0003DMG400000843' => 'stu', 'PGSC0003DMG400008829' => 'stu', 'PGSC0003DMG400030418' => 'stu', 'PGSC0003DMG400031834' => 'stu', 'PGSC0003DMG401028300' => 'stu', 'PGSC0003DMG402028300' => 'stu', 'Phvul.001G219300' => 'pvu', 'Phvul.007G056000' => 'pvu', 'Phvul.007G208000' => 'pvu', 'Phvul.008G119500' => 'pvu', 'Phvul.010G011200' => 'pvu', 'Phvul.010G014800' => 'pvu', 'Phvul.011G062900' => 'pvu', 'Phvul.L007043' => 'pvu', 'Potri.001G242300' => 'ptr', 'Potri.002G185300' => 'ptr', 'Potri.006G086900' => 'ptr', 'Potri.008G151700' => 'ptr', 'Potri.009G033500' => 'ptr', 'Potri.010G089300' => 'ptr', 'Potri.014G110800' => 'ptr', 'Pp3c27_8130' => 'ppa', 'Pp3c6_27410' => 'ppa', 'PRCOL_00001659' => 'pco', 'PRCOL_00001927' => 'pco', 'PRCOL_00003649' => 'pco', 'Prupe.1G011600' => 'ppe', 'Prupe.3G000800' => 'ppe', 'Prupe.3G001100' => 'ppe', 'Prupe.6G072700' => 'ppe', 'Prupe.6G072800' => 'ppe', 'Prupe.6G257300' => 'ppe', 'Prupe.8G033000' => 'ppe', 'Psat0s2633g0080' => 'psa', 'Psat0s3396g0080' => 'psa', 'Psat0s3396g0200' => 'psa', 'Psat3g139080' => 'psa', 'Psat5g285080' => 'psa', 'Psat6g157760' => 'psa', 'Psat6g208440' => 'psa', 'Psat7g215320' => 'psa', 'Psat7g215400' => 'psa', 'Psat7g235600' => 'psa', 'Psat7g235760' => 'psa', 'PSO063G4603' => 'pso', 'PSO210G0182' => 'pso', 'PSO210G0196' => 'pso', 'PSO339G0394' => 'pso', 'PSO339G4127' => 'pso', 'PSO513G0064' => 'pso', 'PSO761G0079' => 'pso', 'QL01p031003' => 'qlo', 'QL01p031078' => 'qlo', 'QL06p003004' => 'qlo', 'QL07p048731' => 'qlo', 'QL09p037427' => 'qlo', 'RcHm_v2.0_Chr3g0466361' => 'rch', 'RcHm_v2.0_Chr3g0485571' => 'rch', 'RcHm_v2.0_Chr4g0416551' => 'rch', 'RcHm_v2.0_Chr5g0065831' => 'rch', 'Rhsim01G0230500' => 'rsi', 'Rhsim05G0194000' => 'rsi', 'Rhsim08G0250400' => 'rsi', 'Sabra02G0131000' => 'sbr', 'Sabra06G0066300' => 'sbr', 'Sabra08G0115500' => 'sbr', 'Sabra09G0023900' => 'sbr', 'Sabra10G0054000' => 'sbr', 'Sabra14G0081500' => 'sbr', 'Sabra16G0147100' => 'sbr', 'SalBow2G2957' => 'sbo', 'SalBow4G3320' => 'sbo', 'SalBow8G1894' => 'sbo', 'Sc07g0007950' => 'sci', 'Sc12g0001360' => 'sci', 'Sc13g0004330' => 'sci', 'Sc20g0005010' => 'sci', 'Sed0000361' => 'sed', 'Sed0001706' => 'sed', 'Sed0002422' => 'sed', 'Sed0004029' => 'sed', 'Sed0004602' => 'sed', 'Sed0004943' => 'sed', 'Sed0008646' => 'sed', 'Sed0023313' => 'sed', 'Sed0024843' => 'sed', 'SEGI_00081' => 'sgi', 'SEGI_00947' => 'sgi', 'SEGI_04046' => 'sgi', 'SEGI_06880' => 'sgi', 'SEGI_09736' => 'sgi', 'SEGI_12741' => 'sgi', 'SEGI_14530' => 'sgi', 'SEGI_20705' => 'sgi', 'SEGI_26088' => 'sgi', 'SEGI_28323' => 'sgi', 'SEGI_33343' => 'sgi', 'SGA_v2.0_scaffold126G33775' => 'sas', 'SGA_v2.0_scaffold2G01337' => 'sas', 'SGA_v2.0_scaffold38G15006' => 'sas', 'SGA_v2.0_scaffold39G15264' => 'sas', 'SGA_v2.0_scaffold453G51880' => 'sas', 'SHI12696' => 'shi', 'SMO367G1096' => 'smo', 'Solyc01g068630.3' => 'sly', 'Solyc05g011880.3' => 'sly', 'Solyc06g076300.3' => 'sly', 'Solyc09g010940.4' => 'sly', 'Solyc09g075890.3' => 'sly', 'Sopen01g030560' => 'spe', 'Sopen05g006630' => 'spe', 'Sopen06g032720' => 'spe', 'Sopen09g005660' => 'spe', 'Sopen09g030690' => 'spe', 'Sp4g14540' => 'spa', 'Sp4g20030' => 'spa', 'Sp5g01320' => 'spa', 'Sp6g21170' => 'spa', 'Sp6g21180' => 'spa', 'Sp6g21190' => 'spa', 'Sp6g40220' => 'spa', 'TAR362G0122' => 'tar', 'TAR362G1338' => 'tar', 'TAR369G0590' => 'tar', 'TAR371G0824' => 'tar', 'TAR622G1429' => 'tar', 'TAR623G0734' => 'tar', 'TAR625G0441' => 'tar', 'TAR629G0976' => 'tar', 'TAR633G1195' => 'tar', 'TAR636G2660' => 'tar', 'THA.LOC104799440' => 'tha', 'THA.LOC104800966' => 'tha', 'THA.LOC104806559' => 'tha', 'THA.LOC104810765' => 'tha', 'THA.LOC104816266' => 'tha', 'THA.LOC104817419' => 'tha', 'THA.LOC104827021' => 'tha', 'Thecc.01G327400' => 'tca', 'Thecc.04G229200' => 'tca', 'Thecc.05G037400' => 'tca', 'Thecc.09G318600' => 'tca', 'Thecc.09G318700' => 'tca', 'Thhalv10006238m.g' => 'esa', 'Thhalv10014321m.g' => 'esa', 'Thhalv10014335m.g' => 'esa', 'Thhalv10015826m.g' => 'esa', 'Thhalv10017107m.g' => 'esa', 'Thhalv10017180m.g' => 'esa', 'Thhalv10029339m.g' => 'esa', 'TPR.G1699' => 'tpr', 'TPR.G23609' => 'tpr', 'TPR.G3081' => 'tpr', 'TPR.G40397' => 'tpr', 'TPR.G5522' => 'tpr', 'TPR.G5618' => 'tpr', 'TPR.G5626' => 'tpr', 'TWI09G1632' => 'twi', 'TWI23G1230' => 'twi', 'TWI53G1064' => 'twi', 'TWI59G0751' => 'twi', 'TWI74G0947' => 'twi', 'TWI77G0337' => 'twi', 'TWI79G1254' => 'twi', 'unitig_0.g2341' => 'ugi', 'unitig_26.g10006' => 'ugi', 'unitig_26.g10008' => 'ugi', 'unitig_26.g9192' => 'ugi', 'vmacro14547' => 'vma', 'vmacro15333' => 'vma', 'vmacro18743' => 'vma', 'vmacro20166' => 'vma', 'VMungo0331G0523' => 'vmu', 'VMungo0331G1202' => 'vmu', 'VMungo0720G1228' => 'vmu', 'VMungo0720G1514' => 'vmu', 'VMungo1080G0169' => 'vmu', 'VMungo1127G1475' => 'vmu', 'VMungo1383G1208' => 'vmu', 'VMungo1383G1698' => 'vmu', 'Zm00001eb012270' => 'zma', 'Zm00001eb054100' => 'zma', 'Zm00001eb063350' => 'zma', 'Zm00001eb328560' => 'zma', 'Zm00001eb342820' => 'zma', 'Zm00001eb362210' => 'zma', 'Zm00001eb397730' => 'zma', 'Zm00001eb399750' => 'zma' ) $gf_id = 'HOM05D000959' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000959' ) $data_identifier = 'HOM05D000959' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 5, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 5, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 10, 'mbi' => (int) 3, 'mco' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 2, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 3, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 11, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399750' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000959', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '622', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p07100' => 'bna', 'A03p11720' => 'bna', 'A05p08300' => 'bna', 'A05p13380' => 'bna', 'A09p54130' => 'bna', 'A10p16690' => 'bna', 'A10p16700' => 'bna', 'A10p33390' => 'bna', 'Aa31LG10G16020' => 'aar', 'Aa31LG1G11810' => 'aar', 'Aa31LG1G11830' => 'aar', 'Aa31LG1G22510' => 'aar', 'Aa31LG5G4890' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5793' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2310' => 'aag', 'Actinidia08499' => 'ach', 'Actinidia11262' => 'ach', 'Actinidia23926' => 'ach', 'Actinidia34420' => 'ach', 'Actinidia36970' => 'ach', 'Ah.02g111220' => 'amhyb', 'Ah.15g097750' => 'amhyb', 'AL4G27500' => 'aly', 'AL6G11470' => 'aly', 'AL8G35950' => 'aly', 'AL8G35960' => 'aly', 'AL8G35970' => 'aly', 'Aqoxy1G00912' => 'aox', 'Aqoxy2G02253' => 'aox', 'Aqoxy2G02411' => 'aox', 'Aqoxy5G00485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BZ66YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K8ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM4FUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6BF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HFV7XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25JBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0YNNV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MAKK6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P70IT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP2Z6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V61LZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YWP64R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3S9AI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7PGHH' => 'arhy', 'AT2G32150' => 'ath', 'AT3G62040' => 'ath', 'AT5G02230' => 'ath', 'AT5G59480' => 'ath', 'AT5G59490' => 'ath', 'ATR0332G060' => 'atr', 'ATR0559G190' => 'atr', 'ATR0693G294' => 'atr', 'Atru.chr3.3975' => 'acertr', 'Atru.chr3.3976' => 'acertr', 'Atru.chr3.3977' => 'acertr', 'Atru.chr4.2498' => 'acertr', 'Atru.chr5.838' => 'acertr', 'Atru.chr8.1990' => 'acertr', 'Atru.chr8.1991' => 'acertr', 'Atru.chr8.1992' => 'acertr', 'AUR62001759' => 'cqu', 'AUR62009545' => 'cqu', 'AUR62010474' => 'cqu', 'AUR62025820' => 'cqu', 'AUR62030422' => 'cqu', 'AUR62033605' => 'cqu', 'AUR62038615' => 'cqu', 'AUR62041347' => 'cqu', 'BcaB01g04574' => 'bca', 'BcaB02g09263' => 'bca', 'BcaB02g10453' => 'bca', 'BcaB05g22513' => 'bca', 'BcaB08g36253' => 'bca', 'BcaB08g36254' => 'bca', 'BcaC01g06519' => 'bca', 'BcaC02g11889' => 'bca', 'BcaC03g14010' => 'bca', 'BcaC03g18439' => 'bca', 'BcaC04g19765' => 'bca', 'BcaC09g48432' => 'bca', 'BcaNung07302' => 'bca', 'BolC2t06040H' => 'bol', 'BolC2t07346H' => 'bol', 'BolC3t13817H' => 'bol', 'BolC4t22625H' => 'bol', 'BolC4t23297H' => 'bol', 'BolC8t51278H' => 'bol', 'BolC9t58050H' => 'bol', 'BolC9t58051H' => 'bol', 'BolC9t60163H' => 'bol', 'BraA02t04712Z' => 'bra', 'BraA02t05791Z' => 'bra', 'BraA03t10483Z' => 'bra', 'BraA05t19795Z' => 'bra', 'BraA05t20276Z' => 'bra', 'BraA09t40827Z' => 'bra', 'BraA10t43750Z' => 'bra', 'BraA10t43751Z' => 'bra', 'BraA10t45370Z' => 'bra', 'C02p00400' => 'bna', 'C02p12460' => 'bna', 'C03p13680' => 'bna', 'C04p10270' => 'bna', 'C04p17500' => 'bna', 'C08p37010' => 'bna', 'C09p51880' => 'bna', 'C09p51890' => 'bna', 'C09p74300' => 'bna', 'CAN.G179.26' => 'can', 'CAN.G3384.1' => 'can', 'CAN.G394.68' => 'can', 'CAN.G907.13' => 'can', 'CANSAT11G0012' => 'cansat', 'CANSAT25G1586' => 'cansat', 'CANSAT35G0735' => 'cansat', 'CANSAT54G0556' => 'cansat', 'CANSAT64G0356' => 'cansat', 'CANSAT78G2042' => 'cansat', 'CARHR125920' => 'chi', 'CARHR131910' => 'chi', 'CARHR172390' => 'chi', 'CARHR211140' => 'chi', 'CARHR285850' => 'chi', 'CARHR285860' => 'chi', 'Carub.0004s1347' => 'cru', 'Carub.0004s1960' => 'cru', 'Carub.0005s2880' => 'cru', 'Carub.0006s0107' => 'cru', 'Carub.0008s2015' => 'cru', 'Carub.0008s2016' => 'cru', 'Carub.0008s2017' => 'cru', 'Ca_01315_v3' => 'car', 'Ca_05063_v3' => 'car', 'Ca_10231_v3' => 'car', 'Ca_10913_v3' => 'car', 'Ca_19156_v3' => 'car', 'Ca_23644_v3' => 'car', 'Ca_26735_v3' => 'car', 'Cc01_g13130' => 'ccan', 'Cc02_g21690' => 'ccan', 'Cc03_g03600' => 'ccan', 'Cc06_g02510' => 'ccan', 'CDE02G1265' => 'cde', 'CDE05G0415' => 'cde', 'CDE08G1082' => 'cde', 'Cfa005780' => 'cfa', 'Cfa011522' => 'cfa', 'Cfa011523' => 'cfa', 'Cfa015627' => 'cfa', 'Cfa017359' => 'cfa', 'Ciclev10005687m.g' => 'ccl', 'Ciclev10012173m.g' => 'ccl', 'Ciclev10021621m.g' => 'ccl', 'Ciclev10028968m.g' => 'ccl', 'Ciclev10029907m.g' => 'ccl', 'CiPaw.01G164800' => 'cil', 'CiPaw.07G083700' => 'cil', 'CiPaw.07G127000' => 'cil', 'CiPaw.07G136900' => 'cil', 'CiPaw.08G081700' => 'cil', 'CiPaw.09G194600' => 'cil', 'CiPaw.10G146500' => 'cil', 'CiPaw.13G091500' => 'cil', 'CiPaw.13G091600' => 'cil', 'ClCG00G003390' => 'cla', 'ClCG01G007220' => 'cla', 'ClCG03G001370' => 'cla', 'ClCG04G008100' => 'cla', 'ClCG06G006110' => 'cla', 'ClCG06G006130' => 'cla', 'ClCG10G021210' => 'cla', 'COL.COLO4_07648' => 'col', 'COL.COLO4_07650' => 'col', 'COL.COLO4_07651' => 'col', 'COL.COLO4_14780' => 'col', 'COL.COLO4_18546' => 'col', 'COL.COLO4_18547' => 'col', 'COL.COLO4_23103' => 'col', 'COL.COLO4_30419' => 'col', 'COL.COLO4_34232' => 'col', 'Cpa.g.sc169.20' => 'cpa', 'Cpa.g.sc57.45' => 'cpa', 'Cpa.g.sc58.124' => 'cpa', 'Cpa.g.sc58.125' => 'cpa', 'Cpa.g.sc81.118' => 'cpa', 'Cpa.g.sc81.119' => 'cpa', 'Cre12.g524700' => 'cre', 'CsaV3_1G034430' => 'csa', 'CsaV3_1G034440' => 'csa', 'CsaV3_1G034450' => 'csa', 'CsaV3_3G034830' => 'csa', 'CsaV3_4G025090' => 'csa', 'CsaV3_5G018660' => 'csa', 'CsaV3_6G038160' => 'csa', 'CSS0003447' => 'camsi', 'CSS0017840' => 'camsi', 'CSS0019260' => 'camsi', 'CSS0040375' => 'camsi', 'CSS0042533' => 'camsi', 'DCAR_005960' => 'dca', 'DCAR_012104' => 'dca', 'DCAR_012105' => 'dca', 'DCAR_012293' => 'dca', 'DCAR_015632' => 'dca', 'DCAR_024602' => 'dca', 'DCAR_028752' => 'dca', 'Dinv06261' => 'din', 'Dinv13982' => 'din', 'Dinv17029' => 'din', 'Dinv18463' => 'din', 'Dinv33181' => 'din', 'Dinv35585' => 'din', 'Dinv37161' => 'din', 'Dinv42977' => 'din', 'Dinv43122' => 'din', 'Dinv44517' => 'din', 'Duzib093G0256' => 'dzi', 'Duzib106G1254' => 'dzi', 'Duzib128G1789' => 'dzi', 'Duzib133G0633' => 'dzi', 'Duzib138G0510' => 'dzi', 'Duzib150G1084' => 'dzi', 'Duzib168G0488' => 'dzi', 'Duzib168G1523' => 'dzi', 'Duzib170G0133' => 'dzi', 'ECA234G1433' => 'eca', 'ECA236G1432' => 'eca', 'ECA236G2256' => 'eca', 'ECA236G2365' => 'eca', 'ECA236G4830' => 'eca', 'ECA248G1505' => 'eca', 'EL10Ac3g06431' => 'bvu', 'EL10Ac5g12577' => 'bvu', 'EL10Ac6g13533' => 'bvu', 'EL10Ac7g16045' => 'bvu', 'Eucgr.A01281' => 'egr', 'Eucgr.B02326' => 'egr', 'Eucgr.H03532' => 'egr', 'Eucgr.K00553' => 'egr', 'Eucgr.K03116' => 'egr', 'FAN02G3963' => 'fan', 'FAN05G0438' => 'fan', 'FAN09G2434' => 'fan', 'FAN12G3984' => 'fan', 'FAN14G0798' => 'fan', 'FAN17G0652' => 'fan', 'FAN19G1988' => 'fan', 'FAN22G0632' => 'fan', 'FAN23G0387' => 'fan', 'FAN26G1323' => 'fan', 'FAN28G0666' => 'fan', 'FvH4_1g26080' => 'fve', 'FvH4_3g36780' => 'fve', 'FvH4_4g15270' => 'fve', 'FvH4_6g13490' => 'fve', 'Glyma.01G098700' => 'gma', 'Glyma.03G065900' => 'gma', 'Glyma.03G073754' => 'gma', 'Glyma.03G073758' => 'gma', 'Glyma.03G083200' => 'gma', 'Glyma.03G225500' => 'gma', 'Glyma.05G037766' => 'gma', 'Glyma.07G133500' => 'gma', 'Glyma.10G139400' => 'gma', 'Glyma.10G248900' => 'gma', 'Glyma.11G137800' => 'gma', 'Glyma.12G061300' => 'gma', 'Glyma.13G337900' => 'gma', 'Glyma.15G036600' => 'gma', 'Glyma.18G182800' => 'gma', 'Glyma.19G222500' => 'gma', 'Glyma.20G144800' => 'gma', 'Gohir.A01G222000' => 'ghi', 'Gohir.A03G044000' => 'ghi', 'Gohir.A03G044100' => 'ghi', 'Gohir.A04G083100' => 'ghi', 'Gohir.A07G127200' => 'ghi', 'Gohir.A07G132400' => 'ghi', 'Gohir.A08G000700' => 'ghi', 'Gohir.A11G327300' => 'ghi', 'Gohir.D01G211500' => 'ghi', 'Gohir.D03G123400' => 'ghi', 'Gohir.D03G123500' => 'ghi', 'Gohir.D04G121800' => 'ghi', 'Gohir.D07G131500' => 'ghi', 'Gohir.D07G136600' => 'ghi', 'Gohir.D08G011600' => 'ghi', 'Gohir.D11G346200' => 'ghi', 'Gorai.001G142800' => 'gra', 'Gorai.001G148700' => 'gra', 'Gorai.002G257300' => 'gra', 'Gorai.003G130000' => 'gra', 'Gorai.003G130100' => 'gra', 'Gorai.004G005300' => 'gra', 'Gorai.007G376500' => 'gra', 'Gorai.012G104700' => 'gra', 'GSVIVG01017946001' => 'vvi', 'GSVIVG01024928001' => 'vvi', 'GSVIVG01028227001' => 'vvi', 'GSVIVG01034151001' => 'vvi', 'HanXRQChr05g0135031' => 'han', 'HanXRQChr05g0135041' => 'han', 'HanXRQChr05g0140021' => 'han', 'HanXRQChr06g0178981' => 'han', 'HanXRQChr07g0188251' => 'han', 'HanXRQChr08g0235311' => 'han', 'HanXRQChr09g0271011' => 'han', 'HanXRQChr10g0293321' => 'han', 'HanXRQChr13g0388171' => 'han', 'Haze_00916' => 'cav', 'Haze_05063' => 'cav', 'Haze_20814' => 'cav', 'Haze_24128' => 'cav', 'Hma1.2p1_0745F.1_g212010' => 'hma', 'Hma1.2p1_0757F.1_g213260' => 'hma', 'Hma1.2p1_0936F.1_g238840' => 'hma', 'Hma1.2p1_1735F.1_g299890' => 'hma', 'Hma1.2p1_1861F.1_g305685' => 'hma', 'HPP92_003397' => 'vpl', 'HPP92_012597' => 'vpl', 'HPP92_015520' => 'vpl', 'HPP92_015539' => 'vpl', 'HPP92_020373' => 'vpl', 'Hund04938' => 'sun', 'Hund10677' => 'sun', 'Hund11033' => 'sun', 'Hund12155' => 'sun', 'Lalb_Chr01g0022551' => 'lal', 'Lalb_Chr03g0042341' => 'lal', 'Lalb_Chr07g0192931' => 'lal', 'Lalb_Chr12g0209551' => 'lal', 'Lalb_Chr19g0125251' => 'lal', 'Lalb_Chr19g0137891' => 'lal', 'Lalb_Chr21g0304641' => 'lal', 'Lalb_Chr21g0309881' => 'lal', 'Lj1A5T12' => 'lonja', 'Lj1C148G10' => 'lonja', 'Lj2A93T83' => 'lonja', 'Lj3A738G68' => 'lonja', 'Lj3C966T1' => 'lonja', 'Lj3g0018958' => 'lja', 'Lj3g0021831' => 'lja', 'Lj3g0025443' => 'lja', 'Lj4g0026809' => 'lja', 'Lj5g0012558' => 'lja', 'Lj5g0021586' => 'lja', 'Lsat_1_v5_gn_5_156840' => 'lsa', 'Lsat_1_v5_gn_8_73460' => 'lsa', 'Lsat_1_v5_gn_8_73481' => 'lsa', 'Lsat_1_v5_gn_9_31601' => 'lsa', 'Lsat_1_v5_gn_9_77320' => 'lsa', 'Manes.01G171300' => 'mes', 'Manes.01G171400' => 'mes', 'Manes.01G236100' => 'mes', 'Manes.02G130500' => 'mes', 'Manes.02G130600' => 'mes', 'Manes.03G180200' => 'mes', 'Manes.05G007000' => 'mes', 'Manes.08G084400' => 'mes', 'Manes.09G092600' => 'mes', 'Manes.15G027900' => 'mes', 'MBI04_g40948_MAGBIO' => 'mbi', 'MBI14_g12123_MAGBIO' => 'mbi', 'MBI18_g28915_MAGBIO' => 'mbi', 'MCO09G053' => 'mco', 'MCO11G782' => 'mco', 'MCO15G215' => 'mco', 'MD03G1088500' => 'mdo', 'MD03G1088600' => 'mdo', 'MD04G1130800' => 'mdo', 'MD09G1291700' => 'mdo', 'MD11G1097500' => 'mdo', 'MD11G1097600' => 'mdo', 'MD12G1143900' => 'mdo', 'MD13G1191400' => 'mdo', 'MD16G1191500' => 'mdo', 'Medtr1g085570' => 'mtr', 'Medtr1g104610' => 'mtr', 'Medtr2g097520' => 'mtr', 'Medtr4g021800' => 'mtr', 'Medtr4g021825' => 'mtr', 'Medtr4g064270' => 'mtr', 'Medtr4g064380' => 'mtr', 'Medtr7g062150' => 'mtr', 'MELO3C003138.2' => 'cme', 'MELO3C005187.2' => 'cme', 'MELO3C009252.2' => 'cme', 'MELO3C014481.2' => 'cme', 'MELO3C020616.2' => 'cme', 'MELO3C020617.2' => 'cme', 'MELO3C020618.2' => 'cme', 'Migut.G00328' => 'egut', 'Migut.J00320' => 'egut', 'Migut.L01000' => 'egut', 'Migut.L01953' => 'egut', 'MSTRG.10253' => 'ama', 'MSTRG.19077' => 'ama', 'MSTRG.26780' => 'ama', 'MSTRG.4023' => 'ama', 'MSTRG.5655' => 'ama', 'MSTRG.9992' => 'ama', 'Nitab4.5_0000043g0310' => 'nta', 'Nitab4.5_0000463g0080' => 'nta', 'Nitab4.5_0000705g0170' => 'nta', 'Nitab4.5_0001326g0060' => 'nta', 'Nitab4.5_0001628g0030' => 'nta', 'Nitab4.5_0002103g0110' => 'nta', 'Nitab4.5_0002946g0030' => 'nta', 'Nitab4.5_0004639g0030' => 'nta', 'Nn2g11149' => 'nnu', 'Nn2g13389' => 'nnu', 'Nn4g25326' => 'nnu', 'Nn4g26290' => 'nnu', 'Nn5g29865' => 'nnu', 'Oeu004163.1' => 'oeu', 'Oeu006901.1' => 'oeu', 'Oeu010096.1' => 'oeu', 'Oeu024340.1' => 'oeu', 'Oeu048369.1' => 'oeu', 'Os01g0973000' => 'osa', 'Os03g0273800' => 'osa', 'Os03g0701200' => 'osa', 'Os03g0834050' => 'osa', 'Os07g0634400' => 'osa', 'Peaxi162Scf00092g01414' => 'pax', 'Peaxi162Scf00165g00818' => 'pax', 'Peaxi162Scf00309g00516' => 'pax', 'Peaxi162Scf00774g00218' => 'pax', 'PGR004G1824' => 'pgr', 'PGR004G2606' => 'pgr', 'PGR031G2716' => 'pgr', 'PGR102G2460' => 'pgr', 'PGR142G2599' => 'pgr', 'PGSC0003DMG400000843' => 'stu', 'PGSC0003DMG400008829' => 'stu', 'PGSC0003DMG400030418' => 'stu', 'PGSC0003DMG400031834' => 'stu', 'PGSC0003DMG401028300' => 'stu', 'PGSC0003DMG402028300' => 'stu', 'Phvul.001G219300' => 'pvu', 'Phvul.007G056000' => 'pvu', 'Phvul.007G208000' => 'pvu', 'Phvul.008G119500' => 'pvu', 'Phvul.010G011200' => 'pvu', 'Phvul.010G014800' => 'pvu', 'Phvul.011G062900' => 'pvu', 'Phvul.L007043' => 'pvu', 'Potri.001G242300' => 'ptr', 'Potri.002G185300' => 'ptr', 'Potri.006G086900' => 'ptr', 'Potri.008G151700' => 'ptr', 'Potri.009G033500' => 'ptr', 'Potri.010G089300' => 'ptr', 'Potri.014G110800' => 'ptr', 'Pp3c27_8130' => 'ppa', 'Pp3c6_27410' => 'ppa', 'PRCOL_00001659' => 'pco', 'PRCOL_00001927' => 'pco', 'PRCOL_00003649' => 'pco', 'Prupe.1G011600' => 'ppe', 'Prupe.3G000800' => 'ppe', 'Prupe.3G001100' => 'ppe', 'Prupe.6G072700' => 'ppe', 'Prupe.6G072800' => 'ppe', 'Prupe.6G257300' => 'ppe', 'Prupe.8G033000' => 'ppe', 'Psat0s2633g0080' => 'psa', 'Psat0s3396g0080' => 'psa', 'Psat0s3396g0200' => 'psa', 'Psat3g139080' => 'psa', 'Psat5g285080' => 'psa', 'Psat6g157760' => 'psa', 'Psat6g208440' => 'psa', 'Psat7g215320' => 'psa', 'Psat7g215400' => 'psa', 'Psat7g235600' => 'psa', 'Psat7g235760' => 'psa', 'PSO063G4603' => 'pso', 'PSO210G0182' => 'pso', 'PSO210G0196' => 'pso', 'PSO339G0394' => 'pso', 'PSO339G4127' => 'pso', 'PSO513G0064' => 'pso', 'PSO761G0079' => 'pso', 'QL01p031003' => 'qlo', 'QL01p031078' => 'qlo', 'QL06p003004' => 'qlo', 'QL07p048731' => 'qlo', 'QL09p037427' => 'qlo', 'RcHm_v2.0_Chr3g0466361' => 'rch', 'RcHm_v2.0_Chr3g0485571' => 'rch', 'RcHm_v2.0_Chr4g0416551' => 'rch', 'RcHm_v2.0_Chr5g0065831' => 'rch', 'Rhsim01G0230500' => 'rsi', 'Rhsim05G0194000' => 'rsi', 'Rhsim08G0250400' => 'rsi', 'Sabra02G0131000' => 'sbr', 'Sabra06G0066300' => 'sbr', 'Sabra08G0115500' => 'sbr', 'Sabra09G0023900' => 'sbr', 'Sabra10G0054000' => 'sbr', 'Sabra14G0081500' => 'sbr', 'Sabra16G0147100' => 'sbr', 'SalBow2G2957' => 'sbo', 'SalBow4G3320' => 'sbo', 'SalBow8G1894' => 'sbo', 'Sc07g0007950' => 'sci', 'Sc12g0001360' => 'sci', 'Sc13g0004330' => 'sci', 'Sc20g0005010' => 'sci', 'Sed0000361' => 'sed', 'Sed0001706' => 'sed', 'Sed0002422' => 'sed', 'Sed0004029' => 'sed', 'Sed0004602' => 'sed', 'Sed0004943' => 'sed', 'Sed0008646' => 'sed', 'Sed0023313' => 'sed', 'Sed0024843' => 'sed', 'SEGI_00081' => 'sgi', 'SEGI_00947' => 'sgi', 'SEGI_04046' => 'sgi', 'SEGI_06880' => 'sgi', 'SEGI_09736' => 'sgi', 'SEGI_12741' => 'sgi', 'SEGI_14530' => 'sgi', 'SEGI_20705' => 'sgi', 'SEGI_26088' => 'sgi', 'SEGI_28323' => 'sgi', 'SEGI_33343' => 'sgi', 'SGA_v2.0_scaffold126G33775' => 'sas', 'SGA_v2.0_scaffold2G01337' => 'sas', 'SGA_v2.0_scaffold38G15006' => 'sas', 'SGA_v2.0_scaffold39G15264' => 'sas', 'SGA_v2.0_scaffold453G51880' => 'sas', 'SHI12696' => 'shi', 'SMO367G1096' => 'smo', 'Solyc01g068630.3' => 'sly', 'Solyc05g011880.3' => 'sly', 'Solyc06g076300.3' => 'sly', 'Solyc09g010940.4' => 'sly', 'Solyc09g075890.3' => 'sly', 'Sopen01g030560' => 'spe', 'Sopen05g006630' => 'spe', 'Sopen06g032720' => 'spe', 'Sopen09g005660' => 'spe', 'Sopen09g030690' => 'spe', 'Sp4g14540' => 'spa', 'Sp4g20030' => 'spa', 'Sp5g01320' => 'spa', 'Sp6g21170' => 'spa', 'Sp6g21180' => 'spa', 'Sp6g21190' => 'spa', 'Sp6g40220' => 'spa', 'TAR362G0122' => 'tar', 'TAR362G1338' => 'tar', 'TAR369G0590' => 'tar', 'TAR371G0824' => 'tar', 'TAR622G1429' => 'tar', 'TAR623G0734' => 'tar', 'TAR625G0441' => 'tar', 'TAR629G0976' => 'tar', 'TAR633G1195' => 'tar', 'TAR636G2660' => 'tar', 'THA.LOC104799440' => 'tha', 'THA.LOC104800966' => 'tha', 'THA.LOC104806559' => 'tha', 'THA.LOC104810765' => 'tha', 'THA.LOC104816266' => 'tha', 'THA.LOC104817419' => 'tha', 'THA.LOC104827021' => 'tha', 'Thecc.01G327400' => 'tca', 'Thecc.04G229200' => 'tca', 'Thecc.05G037400' => 'tca', 'Thecc.09G318600' => 'tca', 'Thecc.09G318700' => 'tca', 'Thhalv10006238m.g' => 'esa', 'Thhalv10014321m.g' => 'esa', 'Thhalv10014335m.g' => 'esa', 'Thhalv10015826m.g' => 'esa', 'Thhalv10017107m.g' => 'esa', 'Thhalv10017180m.g' => 'esa', 'Thhalv10029339m.g' => 'esa', 'TPR.G1699' => 'tpr', 'TPR.G23609' => 'tpr', 'TPR.G3081' => 'tpr', 'TPR.G40397' => 'tpr', 'TPR.G5522' => 'tpr', 'TPR.G5618' => 'tpr', 'TPR.G5626' => 'tpr', 'TWI09G1632' => 'twi', 'TWI23G1230' => 'twi', 'TWI53G1064' => 'twi', 'TWI59G0751' => 'twi', 'TWI74G0947' => 'twi', 'TWI77G0337' => 'twi', 'TWI79G1254' => 'twi', 'unitig_0.g2341' => 'ugi', 'unitig_26.g10006' => 'ugi', 'unitig_26.g10008' => 'ugi', 'unitig_26.g9192' => 'ugi', 'vmacro14547' => 'vma', 'vmacro15333' => 'vma', 'vmacro18743' => 'vma', 'vmacro20166' => 'vma', 'VMungo0331G0523' => 'vmu', 'VMungo0331G1202' => 'vmu', 'VMungo0720G1228' => 'vmu', 'VMungo0720G1514' => 'vmu', 'VMungo1080G0169' => 'vmu', 'VMungo1127G1475' => 'vmu', 'VMungo1383G1208' => 'vmu', 'VMungo1383G1698' => 'vmu', 'Zm00001eb012270' => 'zma', 'Zm00001eb054100' => 'zma', 'Zm00001eb063350' => 'zma', 'Zm00001eb328560' => 'zma', 'Zm00001eb342820' => 'zma', 'Zm00001eb362210' => 'zma', 'Zm00001eb397730' => 'zma', 'Zm00001eb399750' => 'zma' ), 'gf_id' => 'HOM05D000959', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000959' ), 'data_identifier' => 'HOM05D000959', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000959', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '622', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p07100' => 'bna', 'A03p11720' => 'bna', 'A05p08300' => 'bna', 'A05p13380' => 'bna', 'A09p54130' => 'bna', 'A10p16690' => 'bna', 'A10p16700' => 'bna', 'A10p33390' => 'bna', 'Aa31LG10G16020' => 'aar', 'Aa31LG1G11810' => 'aar', 'Aa31LG1G11830' => 'aar', 'Aa31LG1G22510' => 'aar', 'Aa31LG5G4890' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5793' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2310' => 'aag', 'Actinidia08499' => 'ach', 'Actinidia11262' => 'ach', 'Actinidia23926' => 'ach', 'Actinidia34420' => 'ach', 'Actinidia36970' => 'ach', 'Ah.02g111220' => 'amhyb', 'Ah.15g097750' => 'amhyb', 'AL4G27500' => 'aly', 'AL6G11470' => 'aly', 'AL8G35950' => 'aly', 'AL8G35960' => 'aly', 'AL8G35970' => 'aly', 'Aqoxy1G00912' => 'aox', 'Aqoxy2G02253' => 'aox', 'Aqoxy2G02411' => 'aox', 'Aqoxy5G00485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BZ66YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K8ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM4FUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6BF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HFV7XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25JBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0YNNV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MAKK6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P70IT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP2Z6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V61LZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YWP64R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3S9AI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7PGHH' => 'arhy', 'AT2G32150' => 'ath', 'AT3G62040' => 'ath', 'AT5G02230' => 'ath', 'AT5G59480' => 'ath', 'AT5G59490' => 'ath', 'ATR0332G060' => 'atr', 'ATR0559G190' => 'atr', 'ATR0693G294' => 'atr', 'Atru.chr3.3975' => 'acertr', 'Atru.chr3.3976' => 'acertr', 'Atru.chr3.3977' => 'acertr', 'Atru.chr4.2498' => 'acertr', 'Atru.chr5.838' => 'acertr', 'Atru.chr8.1990' => 'acertr', 'Atru.chr8.1991' => 'acertr', 'Atru.chr8.1992' => 'acertr', 'AUR62001759' => 'cqu', 'AUR62009545' => 'cqu', 'AUR62010474' => 'cqu', 'AUR62025820' => 'cqu', 'AUR62030422' => 'cqu', 'AUR62033605' => 'cqu', 'AUR62038615' => 'cqu', 'AUR62041347' => 'cqu', 'BcaB01g04574' => 'bca', 'BcaB02g09263' => 'bca', 'BcaB02g10453' => 'bca', 'BcaB05g22513' => 'bca', 'BcaB08g36253' => 'bca', 'BcaB08g36254' => 'bca', 'BcaC01g06519' => 'bca', 'BcaC02g11889' => 'bca', 'BcaC03g14010' => 'bca', 'BcaC03g18439' => 'bca', 'BcaC04g19765' => 'bca', 'BcaC09g48432' => 'bca', 'BcaNung07302' => 'bca', 'BolC2t06040H' => 'bol', 'BolC2t07346H' => 'bol', 'BolC3t13817H' => 'bol', 'BolC4t22625H' => 'bol', 'BolC4t23297H' => 'bol', 'BolC8t51278H' => 'bol', 'BolC9t58050H' => 'bol', 'BolC9t58051H' => 'bol', 'BolC9t60163H' => 'bol', 'BraA02t04712Z' => 'bra', 'BraA02t05791Z' => 'bra', 'BraA03t10483Z' => 'bra', 'BraA05t19795Z' => 'bra', 'BraA05t20276Z' => 'bra', 'BraA09t40827Z' => 'bra', 'BraA10t43750Z' => 'bra', 'BraA10t43751Z' => 'bra', 'BraA10t45370Z' => 'bra', 'C02p00400' => 'bna', 'C02p12460' => 'bna', 'C03p13680' => 'bna', 'C04p10270' => 'bna', 'C04p17500' => 'bna', 'C08p37010' => 'bna', 'C09p51880' => 'bna', 'C09p51890' => 'bna', 'C09p74300' => 'bna', 'CAN.G179.26' => 'can', 'CAN.G3384.1' => 'can', 'CAN.G394.68' => 'can', 'CAN.G907.13' => 'can', 'CANSAT11G0012' => 'cansat', 'CANSAT25G1586' => 'cansat', 'CANSAT35G0735' => 'cansat', 'CANSAT54G0556' => 'cansat', 'CANSAT64G0356' => 'cansat', 'CANSAT78G2042' => 'cansat', 'CARHR125920' => 'chi', 'CARHR131910' => 'chi', 'CARHR172390' => 'chi', 'CARHR211140' => 'chi', 'CARHR285850' => 'chi', 'CARHR285860' => 'chi', 'Carub.0004s1347' => 'cru', 'Carub.0004s1960' => 'cru', 'Carub.0005s2880' => 'cru', 'Carub.0006s0107' => 'cru', 'Carub.0008s2015' => 'cru', 'Carub.0008s2016' => 'cru', 'Carub.0008s2017' => 'cru', 'Ca_01315_v3' => 'car', 'Ca_05063_v3' => 'car', 'Ca_10231_v3' => 'car', 'Ca_10913_v3' => 'car', 'Ca_19156_v3' => 'car', 'Ca_23644_v3' => 'car', 'Ca_26735_v3' => 'car', 'Cc01_g13130' => 'ccan', 'Cc02_g21690' => 'ccan', 'Cc03_g03600' => 'ccan', 'Cc06_g02510' => 'ccan', 'CDE02G1265' => 'cde', 'CDE05G0415' => 'cde', 'CDE08G1082' => 'cde', 'Cfa005780' => 'cfa', 'Cfa011522' => 'cfa', 'Cfa011523' => 'cfa', 'Cfa015627' => 'cfa', 'Cfa017359' => 'cfa', 'Ciclev10005687m.g' => 'ccl', 'Ciclev10012173m.g' => 'ccl', 'Ciclev10021621m.g' => 'ccl', 'Ciclev10028968m.g' => 'ccl', 'Ciclev10029907m.g' => 'ccl', 'CiPaw.01G164800' => 'cil', 'CiPaw.07G083700' => 'cil', 'CiPaw.07G127000' => 'cil', 'CiPaw.07G136900' => 'cil', 'CiPaw.08G081700' => 'cil', 'CiPaw.09G194600' => 'cil', 'CiPaw.10G146500' => 'cil', 'CiPaw.13G091500' => 'cil', 'CiPaw.13G091600' => 'cil', 'ClCG00G003390' => 'cla', 'ClCG01G007220' => 'cla', 'ClCG03G001370' => 'cla', 'ClCG04G008100' => 'cla', 'ClCG06G006110' => 'cla', 'ClCG06G006130' => 'cla', 'ClCG10G021210' => 'cla', 'COL.COLO4_07648' => 'col', 'COL.COLO4_07650' => 'col', 'COL.COLO4_07651' => 'col', 'COL.COLO4_14780' => 'col', 'COL.COLO4_18546' => 'col', 'COL.COLO4_18547' => 'col', 'COL.COLO4_23103' => 'col', 'COL.COLO4_30419' => 'col', 'COL.COLO4_34232' => 'col', 'Cpa.g.sc169.20' => 'cpa', 'Cpa.g.sc57.45' => 'cpa', 'Cpa.g.sc58.124' => 'cpa', 'Cpa.g.sc58.125' => 'cpa', 'Cpa.g.sc81.118' => 'cpa', 'Cpa.g.sc81.119' => 'cpa', 'Cre12.g524700' => 'cre', 'CsaV3_1G034430' => 'csa', 'CsaV3_1G034440' => 'csa', 'CsaV3_1G034450' => 'csa', 'CsaV3_3G034830' => 'csa', 'CsaV3_4G025090' => 'csa', 'CsaV3_5G018660' => 'csa', 'CsaV3_6G038160' => 'csa', 'CSS0003447' => 'camsi', 'CSS0017840' => 'camsi', 'CSS0019260' => 'camsi', 'CSS0040375' => 'camsi', 'CSS0042533' => 'camsi', 'DCAR_005960' => 'dca', 'DCAR_012104' => 'dca', 'DCAR_012105' => 'dca', 'DCAR_012293' => 'dca', 'DCAR_015632' => 'dca', 'DCAR_024602' => 'dca', 'DCAR_028752' => 'dca', 'Dinv06261' => 'din', 'Dinv13982' => 'din', 'Dinv17029' => 'din', 'Dinv18463' => 'din', 'Dinv33181' => 'din', 'Dinv35585' => 'din', 'Dinv37161' => 'din', 'Dinv42977' => 'din', 'Dinv43122' => 'din', 'Dinv44517' => 'din', 'Duzib093G0256' => 'dzi', 'Duzib106G1254' => 'dzi', 'Duzib128G1789' => 'dzi', 'Duzib133G0633' => 'dzi', 'Duzib138G0510' => 'dzi', 'Duzib150G1084' => 'dzi', 'Duzib168G0488' => 'dzi', 'Duzib168G1523' => 'dzi', 'Duzib170G0133' => 'dzi', 'ECA234G1433' => 'eca', 'ECA236G1432' => 'eca', 'ECA236G2256' => 'eca', 'ECA236G2365' => 'eca', 'ECA236G4830' => 'eca', 'ECA248G1505' => 'eca', 'EL10Ac3g06431' => 'bvu', 'EL10Ac5g12577' => 'bvu', 'EL10Ac6g13533' => 'bvu', 'EL10Ac7g16045' => 'bvu', 'Eucgr.A01281' => 'egr', 'Eucgr.B02326' => 'egr', 'Eucgr.H03532' => 'egr', 'Eucgr.K00553' => 'egr', 'Eucgr.K03116' => 'egr', 'FAN02G3963' => 'fan', 'FAN05G0438' => 'fan', 'FAN09G2434' => 'fan', 'FAN12G3984' => 'fan', 'FAN14G0798' => 'fan', 'FAN17G0652' => 'fan', 'FAN19G1988' => 'fan', 'FAN22G0632' => 'fan', 'FAN23G0387' => 'fan', 'FAN26G1323' => 'fan', 'FAN28G0666' => 'fan', 'FvH4_1g26080' => 'fve', 'FvH4_3g36780' => 'fve', 'FvH4_4g15270' => 'fve', 'FvH4_6g13490' => 'fve', 'Glyma.01G098700' => 'gma', 'Glyma.03G065900' => 'gma', 'Glyma.03G073754' => 'gma', 'Glyma.03G073758' => 'gma', 'Glyma.03G083200' => 'gma', 'Glyma.03G225500' => 'gma', 'Glyma.05G037766' => 'gma', 'Glyma.07G133500' => 'gma', 'Glyma.10G139400' => 'gma', 'Glyma.10G248900' => 'gma', 'Glyma.11G137800' => 'gma', 'Glyma.12G061300' => 'gma', 'Glyma.13G337900' => 'gma', 'Glyma.15G036600' => 'gma', 'Glyma.18G182800' => 'gma', 'Glyma.19G222500' => 'gma', 'Glyma.20G144800' => 'gma', 'Gohir.A01G222000' => 'ghi', 'Gohir.A03G044000' => 'ghi', 'Gohir.A03G044100' => 'ghi', 'Gohir.A04G083100' => 'ghi', 'Gohir.A07G127200' => 'ghi', 'Gohir.A07G132400' => 'ghi', 'Gohir.A08G000700' => 'ghi', 'Gohir.A11G327300' => 'ghi', 'Gohir.D01G211500' => 'ghi', 'Gohir.D03G123400' => 'ghi', 'Gohir.D03G123500' => 'ghi', 'Gohir.D04G121800' => 'ghi', 'Gohir.D07G131500' => 'ghi', 'Gohir.D07G136600' => 'ghi', 'Gohir.D08G011600' => 'ghi', 'Gohir.D11G346200' => 'ghi', 'Gorai.001G142800' => 'gra', 'Gorai.001G148700' => 'gra', 'Gorai.002G257300' => 'gra', 'Gorai.003G130000' => 'gra', 'Gorai.003G130100' => 'gra', 'Gorai.004G005300' => 'gra', 'Gorai.007G376500' => 'gra', 'Gorai.012G104700' => 'gra', 'GSVIVG01017946001' => 'vvi', 'GSVIVG01024928001' => 'vvi', 'GSVIVG01028227001' => 'vvi', 'GSVIVG01034151001' => 'vvi', 'HanXRQChr05g0135031' => 'han', 'HanXRQChr05g0135041' => 'han', 'HanXRQChr05g0140021' => 'han', 'HanXRQChr06g0178981' => 'han', 'HanXRQChr07g0188251' => 'han', 'HanXRQChr08g0235311' => 'han', 'HanXRQChr09g0271011' => 'han', 'HanXRQChr10g0293321' => 'han', 'HanXRQChr13g0388171' => 'han', 'Haze_00916' => 'cav', 'Haze_05063' => 'cav', 'Haze_20814' => 'cav', 'Haze_24128' => 'cav', 'Hma1.2p1_0745F.1_g212010' => 'hma', 'Hma1.2p1_0757F.1_g213260' => 'hma', 'Hma1.2p1_0936F.1_g238840' => 'hma', 'Hma1.2p1_1735F.1_g299890' => 'hma', 'Hma1.2p1_1861F.1_g305685' => 'hma', 'HPP92_003397' => 'vpl', 'HPP92_012597' => 'vpl', 'HPP92_015520' => 'vpl', 'HPP92_015539' => 'vpl', 'HPP92_020373' => 'vpl', 'Hund04938' => 'sun', 'Hund10677' => 'sun', 'Hund11033' => 'sun', 'Hund12155' => 'sun', 'Lalb_Chr01g0022551' => 'lal', 'Lalb_Chr03g0042341' => 'lal', 'Lalb_Chr07g0192931' => 'lal', 'Lalb_Chr12g0209551' => 'lal', 'Lalb_Chr19g0125251' => 'lal', 'Lalb_Chr19g0137891' => 'lal', 'Lalb_Chr21g0304641' => 'lal', 'Lalb_Chr21g0309881' => 'lal', 'Lj1A5T12' => 'lonja', 'Lj1C148G10' => 'lonja', 'Lj2A93T83' => 'lonja', 'Lj3A738G68' => 'lonja', 'Lj3C966T1' => 'lonja', 'Lj3g0018958' => 'lja', 'Lj3g0021831' => 'lja', 'Lj3g0025443' => 'lja', 'Lj4g0026809' => 'lja', 'Lj5g0012558' => 'lja', 'Lj5g0021586' => 'lja', 'Lsat_1_v5_gn_5_156840' => 'lsa', 'Lsat_1_v5_gn_8_73460' => 'lsa', 'Lsat_1_v5_gn_8_73481' => 'lsa', 'Lsat_1_v5_gn_9_31601' => 'lsa', 'Lsat_1_v5_gn_9_77320' => 'lsa', 'Manes.01G171300' => 'mes', 'Manes.01G171400' => 'mes', 'Manes.01G236100' => 'mes', 'Manes.02G130500' => 'mes', 'Manes.02G130600' => 'mes', 'Manes.03G180200' => 'mes', 'Manes.05G007000' => 'mes', 'Manes.08G084400' => 'mes', 'Manes.09G092600' => 'mes', 'Manes.15G027900' => 'mes', 'MBI04_g40948_MAGBIO' => 'mbi', 'MBI14_g12123_MAGBIO' => 'mbi', 'MBI18_g28915_MAGBIO' => 'mbi', 'MCO09G053' => 'mco', 'MCO11G782' => 'mco', 'MCO15G215' => 'mco', 'MD03G1088500' => 'mdo', 'MD03G1088600' => 'mdo', 'MD04G1130800' => 'mdo', 'MD09G1291700' => 'mdo', 'MD11G1097500' => 'mdo', 'MD11G1097600' => 'mdo', 'MD12G1143900' => 'mdo', 'MD13G1191400' => 'mdo', 'MD16G1191500' => 'mdo', 'Medtr1g085570' => 'mtr', 'Medtr1g104610' => 'mtr', 'Medtr2g097520' => 'mtr', 'Medtr4g021800' => 'mtr', 'Medtr4g021825' => 'mtr', 'Medtr4g064270' => 'mtr', 'Medtr4g064380' => 'mtr', 'Medtr7g062150' => 'mtr', 'MELO3C003138.2' => 'cme', 'MELO3C005187.2' => 'cme', 'MELO3C009252.2' => 'cme', 'MELO3C014481.2' => 'cme', 'MELO3C020616.2' => 'cme', 'MELO3C020617.2' => 'cme', 'MELO3C020618.2' => 'cme', 'Migut.G00328' => 'egut', 'Migut.J00320' => 'egut', 'Migut.L01000' => 'egut', 'Migut.L01953' => 'egut', 'MSTRG.10253' => 'ama', 'MSTRG.19077' => 'ama', 'MSTRG.26780' => 'ama', 'MSTRG.4023' => 'ama', 'MSTRG.5655' => 'ama', 'MSTRG.9992' => 'ama', 'Nitab4.5_0000043g0310' => 'nta', 'Nitab4.5_0000463g0080' => 'nta', 'Nitab4.5_0000705g0170' => 'nta', 'Nitab4.5_0001326g0060' => 'nta', 'Nitab4.5_0001628g0030' => 'nta', 'Nitab4.5_0002103g0110' => 'nta', 'Nitab4.5_0002946g0030' => 'nta', 'Nitab4.5_0004639g0030' => 'nta', 'Nn2g11149' => 'nnu', 'Nn2g13389' => 'nnu', 'Nn4g25326' => 'nnu', 'Nn4g26290' => 'nnu', 'Nn5g29865' => 'nnu', 'Oeu004163.1' => 'oeu', 'Oeu006901.1' => 'oeu', 'Oeu010096.1' => 'oeu', 'Oeu024340.1' => 'oeu', 'Oeu048369.1' => 'oeu', 'Os01g0973000' => 'osa', 'Os03g0273800' => 'osa', 'Os03g0701200' => 'osa', 'Os03g0834050' => 'osa', 'Os07g0634400' => 'osa', 'Peaxi162Scf00092g01414' => 'pax', 'Peaxi162Scf00165g00818' => 'pax', 'Peaxi162Scf00309g00516' => 'pax', 'Peaxi162Scf00774g00218' => 'pax', 'PGR004G1824' => 'pgr', 'PGR004G2606' => 'pgr', 'PGR031G2716' => 'pgr', 'PGR102G2460' => 'pgr', 'PGR142G2599' => 'pgr', 'PGSC0003DMG400000843' => 'stu', 'PGSC0003DMG400008829' => 'stu', 'PGSC0003DMG400030418' => 'stu', 'PGSC0003DMG400031834' => 'stu', 'PGSC0003DMG401028300' => 'stu', 'PGSC0003DMG402028300' => 'stu', 'Phvul.001G219300' => 'pvu', 'Phvul.007G056000' => 'pvu', 'Phvul.007G208000' => 'pvu', 'Phvul.008G119500' => 'pvu', 'Phvul.010G011200' => 'pvu', 'Phvul.010G014800' => 'pvu', 'Phvul.011G062900' => 'pvu', 'Phvul.L007043' => 'pvu', 'Potri.001G242300' => 'ptr', 'Potri.002G185300' => 'ptr', 'Potri.006G086900' => 'ptr', 'Potri.008G151700' => 'ptr', 'Potri.009G033500' => 'ptr', 'Potri.010G089300' => 'ptr', 'Potri.014G110800' => 'ptr', 'Pp3c27_8130' => 'ppa', 'Pp3c6_27410' => 'ppa', 'PRCOL_00001659' => 'pco', 'PRCOL_00001927' => 'pco', 'PRCOL_00003649' => 'pco', 'Prupe.1G011600' => 'ppe', 'Prupe.3G000800' => 'ppe', 'Prupe.3G001100' => 'ppe', 'Prupe.6G072700' => 'ppe', 'Prupe.6G072800' => 'ppe', 'Prupe.6G257300' => 'ppe', 'Prupe.8G033000' => 'ppe', 'Psat0s2633g0080' => 'psa', 'Psat0s3396g0080' => 'psa', 'Psat0s3396g0200' => 'psa', 'Psat3g139080' => 'psa', 'Psat5g285080' => 'psa', 'Psat6g157760' => 'psa', 'Psat6g208440' => 'psa', 'Psat7g215320' => 'psa', 'Psat7g215400' => 'psa', 'Psat7g235600' => 'psa', 'Psat7g235760' => 'psa', 'PSO063G4603' => 'pso', 'PSO210G0182' => 'pso', 'PSO210G0196' => 'pso', 'PSO339G0394' => 'pso', 'PSO339G4127' => 'pso', 'PSO513G0064' => 'pso', 'PSO761G0079' => 'pso', 'QL01p031003' => 'qlo', 'QL01p031078' => 'qlo', 'QL06p003004' => 'qlo', 'QL07p048731' => 'qlo', 'QL09p037427' => 'qlo', 'RcHm_v2.0_Chr3g0466361' => 'rch', 'RcHm_v2.0_Chr3g0485571' => 'rch', 'RcHm_v2.0_Chr4g0416551' => 'rch', 'RcHm_v2.0_Chr5g0065831' => 'rch', 'Rhsim01G0230500' => 'rsi', 'Rhsim05G0194000' => 'rsi', 'Rhsim08G0250400' => 'rsi', 'Sabra02G0131000' => 'sbr', 'Sabra06G0066300' => 'sbr', 'Sabra08G0115500' => 'sbr', 'Sabra09G0023900' => 'sbr', 'Sabra10G0054000' => 'sbr', 'Sabra14G0081500' => 'sbr', 'Sabra16G0147100' => 'sbr', 'SalBow2G2957' => 'sbo', 'SalBow4G3320' => 'sbo', 'SalBow8G1894' => 'sbo', 'Sc07g0007950' => 'sci', 'Sc12g0001360' => 'sci', 'Sc13g0004330' => 'sci', 'Sc20g0005010' => 'sci', 'Sed0000361' => 'sed', 'Sed0001706' => 'sed', 'Sed0002422' => 'sed', 'Sed0004029' => 'sed', 'Sed0004602' => 'sed', 'Sed0004943' => 'sed', 'Sed0008646' => 'sed', 'Sed0023313' => 'sed', 'Sed0024843' => 'sed', 'SEGI_00081' => 'sgi', 'SEGI_00947' => 'sgi', 'SEGI_04046' => 'sgi', 'SEGI_06880' => 'sgi', 'SEGI_09736' => 'sgi', 'SEGI_12741' => 'sgi', 'SEGI_14530' => 'sgi', 'SEGI_20705' => 'sgi', 'SEGI_26088' => 'sgi', 'SEGI_28323' => 'sgi', 'SEGI_33343' => 'sgi', 'SGA_v2.0_scaffold126G33775' => 'sas', 'SGA_v2.0_scaffold2G01337' => 'sas', 'SGA_v2.0_scaffold38G15006' => 'sas', 'SGA_v2.0_scaffold39G15264' => 'sas', 'SGA_v2.0_scaffold453G51880' => 'sas', 'SHI12696' => 'shi', 'SMO367G1096' => 'smo', 'Solyc01g068630.3' => 'sly', 'Solyc05g011880.3' => 'sly', 'Solyc06g076300.3' => 'sly', 'Solyc09g010940.4' => 'sly', 'Solyc09g075890.3' => 'sly', 'Sopen01g030560' => 'spe', 'Sopen05g006630' => 'spe', 'Sopen06g032720' => 'spe', 'Sopen09g005660' => 'spe', 'Sopen09g030690' => 'spe', 'Sp4g14540' => 'spa', 'Sp4g20030' => 'spa', 'Sp5g01320' => 'spa', 'Sp6g21170' => 'spa', 'Sp6g21180' => 'spa', 'Sp6g21190' => 'spa', 'Sp6g40220' => 'spa', 'TAR362G0122' => 'tar', 'TAR362G1338' => 'tar', 'TAR369G0590' => 'tar', 'TAR371G0824' => 'tar', 'TAR622G1429' => 'tar', 'TAR623G0734' => 'tar', 'TAR625G0441' => 'tar', 'TAR629G0976' => 'tar', 'TAR633G1195' => 'tar', 'TAR636G2660' => 'tar', 'THA.LOC104799440' => 'tha', 'THA.LOC104800966' => 'tha', 'THA.LOC104806559' => 'tha', 'THA.LOC104810765' => 'tha', 'THA.LOC104816266' => 'tha', 'THA.LOC104817419' => 'tha', 'THA.LOC104827021' => 'tha', 'Thecc.01G327400' => 'tca', 'Thecc.04G229200' => 'tca', 'Thecc.05G037400' => 'tca', 'Thecc.09G318600' => 'tca', 'Thecc.09G318700' => 'tca', 'Thhalv10006238m.g' => 'esa', 'Thhalv10014321m.g' => 'esa', 'Thhalv10014335m.g' => 'esa', 'Thhalv10015826m.g' => 'esa', 'Thhalv10017107m.g' => 'esa', 'Thhalv10017180m.g' => 'esa', 'Thhalv10029339m.g' => 'esa', 'TPR.G1699' => 'tpr', 'TPR.G23609' => 'tpr', 'TPR.G3081' => 'tpr', 'TPR.G40397' => 'tpr', 'TPR.G5522' => 'tpr', 'TPR.G5618' => 'tpr', 'TPR.G5626' => 'tpr', 'TWI09G1632' => 'twi', 'TWI23G1230' => 'twi', 'TWI53G1064' => 'twi', 'TWI59G0751' => 'twi', 'TWI74G0947' => 'twi', 'TWI77G0337' => 'twi', 'TWI79G1254' => 'twi', 'unitig_0.g2341' => 'ugi', 'unitig_26.g10006' => 'ugi', 'unitig_26.g10008' => 'ugi', 'unitig_26.g9192' => 'ugi', 'vmacro14547' => 'vma', 'vmacro15333' => 'vma', 'vmacro18743' => 'vma', 'vmacro20166' => 'vma', 'VMungo0331G0523' => 'vmu', 'VMungo0331G1202' => 'vmu', 'VMungo0720G1228' => 'vmu', 'VMungo0720G1514' => 'vmu', 'VMungo1080G0169' => 'vmu', 'VMungo1127G1475' => 'vmu', 'VMungo1383G1208' => 'vmu', 'VMungo1383G1698' => 'vmu', 'Zm00001eb012270' => 'zma', 'Zm00001eb054100' => 'zma', 'Zm00001eb063350' => 'zma', 'Zm00001eb328560' => 'zma', 'Zm00001eb342820' => 'zma', 'Zm00001eb362210' => 'zma', 'Zm00001eb397730' => 'zma', 'Zm00001eb399750' => 'zma' ) $gf_id = 'HOM05D000959' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000959' ) $data_identifier = 'HOM05D000959' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 5, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 5, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 10, 'mbi' => (int) 3, 'mco' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 2, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 3, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 11, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399750' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000959', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '622', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p07100' => 'bna', 'A03p11720' => 'bna', 'A05p08300' => 'bna', 'A05p13380' => 'bna', 'A09p54130' => 'bna', 'A10p16690' => 'bna', 'A10p16700' => 'bna', 'A10p33390' => 'bna', 'Aa31LG10G16020' => 'aar', 'Aa31LG1G11810' => 'aar', 'Aa31LG1G11830' => 'aar', 'Aa31LG1G22510' => 'aar', 'Aa31LG5G4890' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5793' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2310' => 'aag', 'Actinidia08499' => 'ach', 'Actinidia11262' => 'ach', 'Actinidia23926' => 'ach', 'Actinidia34420' => 'ach', 'Actinidia36970' => 'ach', 'Ah.02g111220' => 'amhyb', 'Ah.15g097750' => 'amhyb', 'AL4G27500' => 'aly', 'AL6G11470' => 'aly', 'AL8G35950' => 'aly', 'AL8G35960' => 'aly', 'AL8G35970' => 'aly', 'Aqoxy1G00912' => 'aox', 'Aqoxy2G02253' => 'aox', 'Aqoxy2G02411' => 'aox', 'Aqoxy5G00485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BZ66YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K8ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM4FUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6BF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HFV7XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25JBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0YNNV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MAKK6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P70IT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP2Z6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V61LZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YWP64R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3S9AI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7PGHH' => 'arhy', 'AT2G32150' => 'ath', 'AT3G62040' => 'ath', 'AT5G02230' => 'ath', 'AT5G59480' => 'ath', 'AT5G59490' => 'ath', 'ATR0332G060' => 'atr', 'ATR0559G190' => 'atr', 'ATR0693G294' => 'atr', 'Atru.chr3.3975' => 'acertr', 'Atru.chr3.3976' => 'acertr', 'Atru.chr3.3977' => 'acertr', 'Atru.chr4.2498' => 'acertr', 'Atru.chr5.838' => 'acertr', 'Atru.chr8.1990' => 'acertr', 'Atru.chr8.1991' => 'acertr', 'Atru.chr8.1992' => 'acertr', 'AUR62001759' => 'cqu', 'AUR62009545' => 'cqu', 'AUR62010474' => 'cqu', 'AUR62025820' => 'cqu', 'AUR62030422' => 'cqu', 'AUR62033605' => 'cqu', 'AUR62038615' => 'cqu', 'AUR62041347' => 'cqu', 'BcaB01g04574' => 'bca', 'BcaB02g09263' => 'bca', 'BcaB02g10453' => 'bca', 'BcaB05g22513' => 'bca', 'BcaB08g36253' => 'bca', 'BcaB08g36254' => 'bca', 'BcaC01g06519' => 'bca', 'BcaC02g11889' => 'bca', 'BcaC03g14010' => 'bca', 'BcaC03g18439' => 'bca', 'BcaC04g19765' => 'bca', 'BcaC09g48432' => 'bca', 'BcaNung07302' => 'bca', 'BolC2t06040H' => 'bol', 'BolC2t07346H' => 'bol', 'BolC3t13817H' => 'bol', 'BolC4t22625H' => 'bol', 'BolC4t23297H' => 'bol', 'BolC8t51278H' => 'bol', 'BolC9t58050H' => 'bol', 'BolC9t58051H' => 'bol', 'BolC9t60163H' => 'bol', 'BraA02t04712Z' => 'bra', 'BraA02t05791Z' => 'bra', 'BraA03t10483Z' => 'bra', 'BraA05t19795Z' => 'bra', 'BraA05t20276Z' => 'bra', 'BraA09t40827Z' => 'bra', 'BraA10t43750Z' => 'bra', 'BraA10t43751Z' => 'bra', 'BraA10t45370Z' => 'bra', 'C02p00400' => 'bna', 'C02p12460' => 'bna', 'C03p13680' => 'bna', 'C04p10270' => 'bna', 'C04p17500' => 'bna', 'C08p37010' => 'bna', 'C09p51880' => 'bna', 'C09p51890' => 'bna', 'C09p74300' => 'bna', 'CAN.G179.26' => 'can', 'CAN.G3384.1' => 'can', 'CAN.G394.68' => 'can', 'CAN.G907.13' => 'can', 'CANSAT11G0012' => 'cansat', 'CANSAT25G1586' => 'cansat', 'CANSAT35G0735' => 'cansat', 'CANSAT54G0556' => 'cansat', 'CANSAT64G0356' => 'cansat', 'CANSAT78G2042' => 'cansat', 'CARHR125920' => 'chi', 'CARHR131910' => 'chi', 'CARHR172390' => 'chi', 'CARHR211140' => 'chi', 'CARHR285850' => 'chi', 'CARHR285860' => 'chi', 'Carub.0004s1347' => 'cru', 'Carub.0004s1960' => 'cru', 'Carub.0005s2880' => 'cru', 'Carub.0006s0107' => 'cru', 'Carub.0008s2015' => 'cru', 'Carub.0008s2016' => 'cru', 'Carub.0008s2017' => 'cru', 'Ca_01315_v3' => 'car', 'Ca_05063_v3' => 'car', 'Ca_10231_v3' => 'car', 'Ca_10913_v3' => 'car', 'Ca_19156_v3' => 'car', 'Ca_23644_v3' => 'car', 'Ca_26735_v3' => 'car', 'Cc01_g13130' => 'ccan', 'Cc02_g21690' => 'ccan', 'Cc03_g03600' => 'ccan', 'Cc06_g02510' => 'ccan', 'CDE02G1265' => 'cde', 'CDE05G0415' => 'cde', 'CDE08G1082' => 'cde', 'Cfa005780' => 'cfa', 'Cfa011522' => 'cfa', 'Cfa011523' => 'cfa', 'Cfa015627' => 'cfa', 'Cfa017359' => 'cfa', 'Ciclev10005687m.g' => 'ccl', 'Ciclev10012173m.g' => 'ccl', 'Ciclev10021621m.g' => 'ccl', 'Ciclev10028968m.g' => 'ccl', 'Ciclev10029907m.g' => 'ccl', 'CiPaw.01G164800' => 'cil', 'CiPaw.07G083700' => 'cil', 'CiPaw.07G127000' => 'cil', 'CiPaw.07G136900' => 'cil', 'CiPaw.08G081700' => 'cil', 'CiPaw.09G194600' => 'cil', 'CiPaw.10G146500' => 'cil', 'CiPaw.13G091500' => 'cil', 'CiPaw.13G091600' => 'cil', 'ClCG00G003390' => 'cla', 'ClCG01G007220' => 'cla', 'ClCG03G001370' => 'cla', 'ClCG04G008100' => 'cla', 'ClCG06G006110' => 'cla', 'ClCG06G006130' => 'cla', 'ClCG10G021210' => 'cla', 'COL.COLO4_07648' => 'col', 'COL.COLO4_07650' => 'col', 'COL.COLO4_07651' => 'col', 'COL.COLO4_14780' => 'col', 'COL.COLO4_18546' => 'col', 'COL.COLO4_18547' => 'col', 'COL.COLO4_23103' => 'col', 'COL.COLO4_30419' => 'col', 'COL.COLO4_34232' => 'col', 'Cpa.g.sc169.20' => 'cpa', 'Cpa.g.sc57.45' => 'cpa', 'Cpa.g.sc58.124' => 'cpa', 'Cpa.g.sc58.125' => 'cpa', 'Cpa.g.sc81.118' => 'cpa', 'Cpa.g.sc81.119' => 'cpa', 'Cre12.g524700' => 'cre', 'CsaV3_1G034430' => 'csa', 'CsaV3_1G034440' => 'csa', 'CsaV3_1G034450' => 'csa', 'CsaV3_3G034830' => 'csa', 'CsaV3_4G025090' => 'csa', 'CsaV3_5G018660' => 'csa', 'CsaV3_6G038160' => 'csa', 'CSS0003447' => 'camsi', 'CSS0017840' => 'camsi', 'CSS0019260' => 'camsi', 'CSS0040375' => 'camsi', 'CSS0042533' => 'camsi', 'DCAR_005960' => 'dca', 'DCAR_012104' => 'dca', 'DCAR_012105' => 'dca', 'DCAR_012293' => 'dca', 'DCAR_015632' => 'dca', 'DCAR_024602' => 'dca', 'DCAR_028752' => 'dca', 'Dinv06261' => 'din', 'Dinv13982' => 'din', 'Dinv17029' => 'din', 'Dinv18463' => 'din', 'Dinv33181' => 'din', 'Dinv35585' => 'din', 'Dinv37161' => 'din', 'Dinv42977' => 'din', 'Dinv43122' => 'din', 'Dinv44517' => 'din', 'Duzib093G0256' => 'dzi', 'Duzib106G1254' => 'dzi', 'Duzib128G1789' => 'dzi', 'Duzib133G0633' => 'dzi', 'Duzib138G0510' => 'dzi', 'Duzib150G1084' => 'dzi', 'Duzib168G0488' => 'dzi', 'Duzib168G1523' => 'dzi', 'Duzib170G0133' => 'dzi', 'ECA234G1433' => 'eca', 'ECA236G1432' => 'eca', 'ECA236G2256' => 'eca', 'ECA236G2365' => 'eca', 'ECA236G4830' => 'eca', 'ECA248G1505' => 'eca', 'EL10Ac3g06431' => 'bvu', 'EL10Ac5g12577' => 'bvu', 'EL10Ac6g13533' => 'bvu', 'EL10Ac7g16045' => 'bvu', 'Eucgr.A01281' => 'egr', 'Eucgr.B02326' => 'egr', 'Eucgr.H03532' => 'egr', 'Eucgr.K00553' => 'egr', 'Eucgr.K03116' => 'egr', 'FAN02G3963' => 'fan', 'FAN05G0438' => 'fan', 'FAN09G2434' => 'fan', 'FAN12G3984' => 'fan', 'FAN14G0798' => 'fan', 'FAN17G0652' => 'fan', 'FAN19G1988' => 'fan', 'FAN22G0632' => 'fan', 'FAN23G0387' => 'fan', 'FAN26G1323' => 'fan', 'FAN28G0666' => 'fan', 'FvH4_1g26080' => 'fve', 'FvH4_3g36780' => 'fve', 'FvH4_4g15270' => 'fve', 'FvH4_6g13490' => 'fve', 'Glyma.01G098700' => 'gma', 'Glyma.03G065900' => 'gma', 'Glyma.03G073754' => 'gma', 'Glyma.03G073758' => 'gma', 'Glyma.03G083200' => 'gma', 'Glyma.03G225500' => 'gma', 'Glyma.05G037766' => 'gma', 'Glyma.07G133500' => 'gma', 'Glyma.10G139400' => 'gma', 'Glyma.10G248900' => 'gma', 'Glyma.11G137800' => 'gma', 'Glyma.12G061300' => 'gma', 'Glyma.13G337900' => 'gma', 'Glyma.15G036600' => 'gma', 'Glyma.18G182800' => 'gma', 'Glyma.19G222500' => 'gma', 'Glyma.20G144800' => 'gma', 'Gohir.A01G222000' => 'ghi', 'Gohir.A03G044000' => 'ghi', 'Gohir.A03G044100' => 'ghi', 'Gohir.A04G083100' => 'ghi', 'Gohir.A07G127200' => 'ghi', 'Gohir.A07G132400' => 'ghi', 'Gohir.A08G000700' => 'ghi', 'Gohir.A11G327300' => 'ghi', 'Gohir.D01G211500' => 'ghi', 'Gohir.D03G123400' => 'ghi', 'Gohir.D03G123500' => 'ghi', 'Gohir.D04G121800' => 'ghi', 'Gohir.D07G131500' => 'ghi', 'Gohir.D07G136600' => 'ghi', 'Gohir.D08G011600' => 'ghi', 'Gohir.D11G346200' => 'ghi', 'Gorai.001G142800' => 'gra', 'Gorai.001G148700' => 'gra', 'Gorai.002G257300' => 'gra', 'Gorai.003G130000' => 'gra', 'Gorai.003G130100' => 'gra', 'Gorai.004G005300' => 'gra', 'Gorai.007G376500' => 'gra', 'Gorai.012G104700' => 'gra', 'GSVIVG01017946001' => 'vvi', 'GSVIVG01024928001' => 'vvi', 'GSVIVG01028227001' => 'vvi', 'GSVIVG01034151001' => 'vvi', 'HanXRQChr05g0135031' => 'han', 'HanXRQChr05g0135041' => 'han', 'HanXRQChr05g0140021' => 'han', 'HanXRQChr06g0178981' => 'han', 'HanXRQChr07g0188251' => 'han', 'HanXRQChr08g0235311' => 'han', 'HanXRQChr09g0271011' => 'han', 'HanXRQChr10g0293321' => 'han', 'HanXRQChr13g0388171' => 'han', 'Haze_00916' => 'cav', 'Haze_05063' => 'cav', 'Haze_20814' => 'cav', 'Haze_24128' => 'cav', 'Hma1.2p1_0745F.1_g212010' => 'hma', 'Hma1.2p1_0757F.1_g213260' => 'hma', 'Hma1.2p1_0936F.1_g238840' => 'hma', 'Hma1.2p1_1735F.1_g299890' => 'hma', 'Hma1.2p1_1861F.1_g305685' => 'hma', 'HPP92_003397' => 'vpl', 'HPP92_012597' => 'vpl', 'HPP92_015520' => 'vpl', 'HPP92_015539' => 'vpl', 'HPP92_020373' => 'vpl', 'Hund04938' => 'sun', 'Hund10677' => 'sun', 'Hund11033' => 'sun', 'Hund12155' => 'sun', 'Lalb_Chr01g0022551' => 'lal', 'Lalb_Chr03g0042341' => 'lal', 'Lalb_Chr07g0192931' => 'lal', 'Lalb_Chr12g0209551' => 'lal', 'Lalb_Chr19g0125251' => 'lal', 'Lalb_Chr19g0137891' => 'lal', 'Lalb_Chr21g0304641' => 'lal', 'Lalb_Chr21g0309881' => 'lal', 'Lj1A5T12' => 'lonja', 'Lj1C148G10' => 'lonja', 'Lj2A93T83' => 'lonja', 'Lj3A738G68' => 'lonja', 'Lj3C966T1' => 'lonja', 'Lj3g0018958' => 'lja', 'Lj3g0021831' => 'lja', 'Lj3g0025443' => 'lja', 'Lj4g0026809' => 'lja', 'Lj5g0012558' => 'lja', 'Lj5g0021586' => 'lja', 'Lsat_1_v5_gn_5_156840' => 'lsa', 'Lsat_1_v5_gn_8_73460' => 'lsa', 'Lsat_1_v5_gn_8_73481' => 'lsa', 'Lsat_1_v5_gn_9_31601' => 'lsa', 'Lsat_1_v5_gn_9_77320' => 'lsa', 'Manes.01G171300' => 'mes', 'Manes.01G171400' => 'mes', 'Manes.01G236100' => 'mes', 'Manes.02G130500' => 'mes', 'Manes.02G130600' => 'mes', 'Manes.03G180200' => 'mes', 'Manes.05G007000' => 'mes', 'Manes.08G084400' => 'mes', 'Manes.09G092600' => 'mes', 'Manes.15G027900' => 'mes', 'MBI04_g40948_MAGBIO' => 'mbi', 'MBI14_g12123_MAGBIO' => 'mbi', 'MBI18_g28915_MAGBIO' => 'mbi', 'MCO09G053' => 'mco', 'MCO11G782' => 'mco', 'MCO15G215' => 'mco', 'MD03G1088500' => 'mdo', 'MD03G1088600' => 'mdo', 'MD04G1130800' => 'mdo', 'MD09G1291700' => 'mdo', 'MD11G1097500' => 'mdo', 'MD11G1097600' => 'mdo', 'MD12G1143900' => 'mdo', 'MD13G1191400' => 'mdo', 'MD16G1191500' => 'mdo', 'Medtr1g085570' => 'mtr', 'Medtr1g104610' => 'mtr', 'Medtr2g097520' => 'mtr', 'Medtr4g021800' => 'mtr', 'Medtr4g021825' => 'mtr', 'Medtr4g064270' => 'mtr', 'Medtr4g064380' => 'mtr', 'Medtr7g062150' => 'mtr', 'MELO3C003138.2' => 'cme', 'MELO3C005187.2' => 'cme', 'MELO3C009252.2' => 'cme', 'MELO3C014481.2' => 'cme', 'MELO3C020616.2' => 'cme', 'MELO3C020617.2' => 'cme', 'MELO3C020618.2' => 'cme', 'Migut.G00328' => 'egut', 'Migut.J00320' => 'egut', 'Migut.L01000' => 'egut', 'Migut.L01953' => 'egut', 'MSTRG.10253' => 'ama', 'MSTRG.19077' => 'ama', 'MSTRG.26780' => 'ama', 'MSTRG.4023' => 'ama', 'MSTRG.5655' => 'ama', 'MSTRG.9992' => 'ama', 'Nitab4.5_0000043g0310' => 'nta', 'Nitab4.5_0000463g0080' => 'nta', 'Nitab4.5_0000705g0170' => 'nta', 'Nitab4.5_0001326g0060' => 'nta', 'Nitab4.5_0001628g0030' => 'nta', 'Nitab4.5_0002103g0110' => 'nta', 'Nitab4.5_0002946g0030' => 'nta', 'Nitab4.5_0004639g0030' => 'nta', 'Nn2g11149' => 'nnu', 'Nn2g13389' => 'nnu', 'Nn4g25326' => 'nnu', 'Nn4g26290' => 'nnu', 'Nn5g29865' => 'nnu', 'Oeu004163.1' => 'oeu', 'Oeu006901.1' => 'oeu', 'Oeu010096.1' => 'oeu', 'Oeu024340.1' => 'oeu', 'Oeu048369.1' => 'oeu', 'Os01g0973000' => 'osa', 'Os03g0273800' => 'osa', 'Os03g0701200' => 'osa', 'Os03g0834050' => 'osa', 'Os07g0634400' => 'osa', 'Peaxi162Scf00092g01414' => 'pax', 'Peaxi162Scf00165g00818' => 'pax', 'Peaxi162Scf00309g00516' => 'pax', 'Peaxi162Scf00774g00218' => 'pax', 'PGR004G1824' => 'pgr', 'PGR004G2606' => 'pgr', 'PGR031G2716' => 'pgr', 'PGR102G2460' => 'pgr', 'PGR142G2599' => 'pgr', 'PGSC0003DMG400000843' => 'stu', 'PGSC0003DMG400008829' => 'stu', 'PGSC0003DMG400030418' => 'stu', 'PGSC0003DMG400031834' => 'stu', 'PGSC0003DMG401028300' => 'stu', 'PGSC0003DMG402028300' => 'stu', 'Phvul.001G219300' => 'pvu', 'Phvul.007G056000' => 'pvu', 'Phvul.007G208000' => 'pvu', 'Phvul.008G119500' => 'pvu', 'Phvul.010G011200' => 'pvu', 'Phvul.010G014800' => 'pvu', 'Phvul.011G062900' => 'pvu', 'Phvul.L007043' => 'pvu', 'Potri.001G242300' => 'ptr', 'Potri.002G185300' => 'ptr', 'Potri.006G086900' => 'ptr', 'Potri.008G151700' => 'ptr', 'Potri.009G033500' => 'ptr', 'Potri.010G089300' => 'ptr', 'Potri.014G110800' => 'ptr', 'Pp3c27_8130' => 'ppa', 'Pp3c6_27410' => 'ppa', 'PRCOL_00001659' => 'pco', 'PRCOL_00001927' => 'pco', 'PRCOL_00003649' => 'pco', 'Prupe.1G011600' => 'ppe', 'Prupe.3G000800' => 'ppe', 'Prupe.3G001100' => 'ppe', 'Prupe.6G072700' => 'ppe', 'Prupe.6G072800' => 'ppe', 'Prupe.6G257300' => 'ppe', 'Prupe.8G033000' => 'ppe', 'Psat0s2633g0080' => 'psa', 'Psat0s3396g0080' => 'psa', 'Psat0s3396g0200' => 'psa', 'Psat3g139080' => 'psa', 'Psat5g285080' => 'psa', 'Psat6g157760' => 'psa', 'Psat6g208440' => 'psa', 'Psat7g215320' => 'psa', 'Psat7g215400' => 'psa', 'Psat7g235600' => 'psa', 'Psat7g235760' => 'psa', 'PSO063G4603' => 'pso', 'PSO210G0182' => 'pso', 'PSO210G0196' => 'pso', 'PSO339G0394' => 'pso', 'PSO339G4127' => 'pso', 'PSO513G0064' => 'pso', 'PSO761G0079' => 'pso', 'QL01p031003' => 'qlo', 'QL01p031078' => 'qlo', 'QL06p003004' => 'qlo', 'QL07p048731' => 'qlo', 'QL09p037427' => 'qlo', 'RcHm_v2.0_Chr3g0466361' => 'rch', 'RcHm_v2.0_Chr3g0485571' => 'rch', 'RcHm_v2.0_Chr4g0416551' => 'rch', 'RcHm_v2.0_Chr5g0065831' => 'rch', 'Rhsim01G0230500' => 'rsi', 'Rhsim05G0194000' => 'rsi', 'Rhsim08G0250400' => 'rsi', 'Sabra02G0131000' => 'sbr', 'Sabra06G0066300' => 'sbr', 'Sabra08G0115500' => 'sbr', 'Sabra09G0023900' => 'sbr', 'Sabra10G0054000' => 'sbr', 'Sabra14G0081500' => 'sbr', 'Sabra16G0147100' => 'sbr', 'SalBow2G2957' => 'sbo', 'SalBow4G3320' => 'sbo', 'SalBow8G1894' => 'sbo', 'Sc07g0007950' => 'sci', 'Sc12g0001360' => 'sci', 'Sc13g0004330' => 'sci', 'Sc20g0005010' => 'sci', 'Sed0000361' => 'sed', 'Sed0001706' => 'sed', 'Sed0002422' => 'sed', 'Sed0004029' => 'sed', 'Sed0004602' => 'sed', 'Sed0004943' => 'sed', 'Sed0008646' => 'sed', 'Sed0023313' => 'sed', 'Sed0024843' => 'sed', 'SEGI_00081' => 'sgi', 'SEGI_00947' => 'sgi', 'SEGI_04046' => 'sgi', 'SEGI_06880' => 'sgi', 'SEGI_09736' => 'sgi', 'SEGI_12741' => 'sgi', 'SEGI_14530' => 'sgi', 'SEGI_20705' => 'sgi', 'SEGI_26088' => 'sgi', 'SEGI_28323' => 'sgi', 'SEGI_33343' => 'sgi', 'SGA_v2.0_scaffold126G33775' => 'sas', 'SGA_v2.0_scaffold2G01337' => 'sas', 'SGA_v2.0_scaffold38G15006' => 'sas', 'SGA_v2.0_scaffold39G15264' => 'sas', 'SGA_v2.0_scaffold453G51880' => 'sas', 'SHI12696' => 'shi', 'SMO367G1096' => 'smo', 'Solyc01g068630.3' => 'sly', 'Solyc05g011880.3' => 'sly', 'Solyc06g076300.3' => 'sly', 'Solyc09g010940.4' => 'sly', 'Solyc09g075890.3' => 'sly', 'Sopen01g030560' => 'spe', 'Sopen05g006630' => 'spe', 'Sopen06g032720' => 'spe', 'Sopen09g005660' => 'spe', 'Sopen09g030690' => 'spe', 'Sp4g14540' => 'spa', 'Sp4g20030' => 'spa', 'Sp5g01320' => 'spa', 'Sp6g21170' => 'spa', 'Sp6g21180' => 'spa', 'Sp6g21190' => 'spa', 'Sp6g40220' => 'spa', 'TAR362G0122' => 'tar', 'TAR362G1338' => 'tar', 'TAR369G0590' => 'tar', 'TAR371G0824' => 'tar', 'TAR622G1429' => 'tar', 'TAR623G0734' => 'tar', 'TAR625G0441' => 'tar', 'TAR629G0976' => 'tar', 'TAR633G1195' => 'tar', 'TAR636G2660' => 'tar', 'THA.LOC104799440' => 'tha', 'THA.LOC104800966' => 'tha', 'THA.LOC104806559' => 'tha', 'THA.LOC104810765' => 'tha', 'THA.LOC104816266' => 'tha', 'THA.LOC104817419' => 'tha', 'THA.LOC104827021' => 'tha', 'Thecc.01G327400' => 'tca', 'Thecc.04G229200' => 'tca', 'Thecc.05G037400' => 'tca', 'Thecc.09G318600' => 'tca', 'Thecc.09G318700' => 'tca', 'Thhalv10006238m.g' => 'esa', 'Thhalv10014321m.g' => 'esa', 'Thhalv10014335m.g' => 'esa', 'Thhalv10015826m.g' => 'esa', 'Thhalv10017107m.g' => 'esa', 'Thhalv10017180m.g' => 'esa', 'Thhalv10029339m.g' => 'esa', 'TPR.G1699' => 'tpr', 'TPR.G23609' => 'tpr', 'TPR.G3081' => 'tpr', 'TPR.G40397' => 'tpr', 'TPR.G5522' => 'tpr', 'TPR.G5618' => 'tpr', 'TPR.G5626' => 'tpr', 'TWI09G1632' => 'twi', 'TWI23G1230' => 'twi', 'TWI53G1064' => 'twi', 'TWI59G0751' => 'twi', 'TWI74G0947' => 'twi', 'TWI77G0337' => 'twi', 'TWI79G1254' => 'twi', 'unitig_0.g2341' => 'ugi', 'unitig_26.g10006' => 'ugi', 'unitig_26.g10008' => 'ugi', 'unitig_26.g9192' => 'ugi', 'vmacro14547' => 'vma', 'vmacro15333' => 'vma', 'vmacro18743' => 'vma', 'vmacro20166' => 'vma', 'VMungo0331G0523' => 'vmu', 'VMungo0331G1202' => 'vmu', 'VMungo0720G1228' => 'vmu', 'VMungo0720G1514' => 'vmu', 'VMungo1080G0169' => 'vmu', 'VMungo1127G1475' => 'vmu', 'VMungo1383G1208' => 'vmu', 'VMungo1383G1698' => 'vmu', 'Zm00001eb012270' => 'zma', 'Zm00001eb054100' => 'zma', 'Zm00001eb063350' => 'zma', 'Zm00001eb328560' => 'zma', 'Zm00001eb342820' => 'zma', 'Zm00001eb362210' => 'zma', 'Zm00001eb397730' => 'zma', 'Zm00001eb399750' => 'zma' ), 'gf_id' => 'HOM05D000959', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000959' ), 'data_identifier' => 'HOM05D000959', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000959', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '622', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p07100' => 'bna', 'A03p11720' => 'bna', 'A05p08300' => 'bna', 'A05p13380' => 'bna', 'A09p54130' => 'bna', 'A10p16690' => 'bna', 'A10p16700' => 'bna', 'A10p33390' => 'bna', 'Aa31LG10G16020' => 'aar', 'Aa31LG1G11810' => 'aar', 'Aa31LG1G11830' => 'aar', 'Aa31LG1G22510' => 'aar', 'Aa31LG5G4890' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5793' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2310' => 'aag', 'Actinidia08499' => 'ach', 'Actinidia11262' => 'ach', 'Actinidia23926' => 'ach', 'Actinidia34420' => 'ach', 'Actinidia36970' => 'ach', 'Ah.02g111220' => 'amhyb', 'Ah.15g097750' => 'amhyb', 'AL4G27500' => 'aly', 'AL6G11470' => 'aly', 'AL8G35950' => 'aly', 'AL8G35960' => 'aly', 'AL8G35970' => 'aly', 'Aqoxy1G00912' => 'aox', 'Aqoxy2G02253' => 'aox', 'Aqoxy2G02411' => 'aox', 'Aqoxy5G00485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BZ66YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K8ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM4FUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6BF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HFV7XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25JBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0YNNV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MAKK6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P70IT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP2Z6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V61LZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YWP64R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3S9AI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7PGHH' => 'arhy', 'AT2G32150' => 'ath', 'AT3G62040' => 'ath', 'AT5G02230' => 'ath', 'AT5G59480' => 'ath', 'AT5G59490' => 'ath', 'ATR0332G060' => 'atr', 'ATR0559G190' => 'atr', 'ATR0693G294' => 'atr', 'Atru.chr3.3975' => 'acertr', 'Atru.chr3.3976' => 'acertr', 'Atru.chr3.3977' => 'acertr', 'Atru.chr4.2498' => 'acertr', 'Atru.chr5.838' => 'acertr', 'Atru.chr8.1990' => 'acertr', 'Atru.chr8.1991' => 'acertr', 'Atru.chr8.1992' => 'acertr', 'AUR62001759' => 'cqu', 'AUR62009545' => 'cqu', 'AUR62010474' => 'cqu', 'AUR62025820' => 'cqu', 'AUR62030422' => 'cqu', 'AUR62033605' => 'cqu', 'AUR62038615' => 'cqu', 'AUR62041347' => 'cqu', 'BcaB01g04574' => 'bca', 'BcaB02g09263' => 'bca', 'BcaB02g10453' => 'bca', 'BcaB05g22513' => 'bca', 'BcaB08g36253' => 'bca', 'BcaB08g36254' => 'bca', 'BcaC01g06519' => 'bca', 'BcaC02g11889' => 'bca', 'BcaC03g14010' => 'bca', 'BcaC03g18439' => 'bca', 'BcaC04g19765' => 'bca', 'BcaC09g48432' => 'bca', 'BcaNung07302' => 'bca', 'BolC2t06040H' => 'bol', 'BolC2t07346H' => 'bol', 'BolC3t13817H' => 'bol', 'BolC4t22625H' => 'bol', 'BolC4t23297H' => 'bol', 'BolC8t51278H' => 'bol', 'BolC9t58050H' => 'bol', 'BolC9t58051H' => 'bol', 'BolC9t60163H' => 'bol', 'BraA02t04712Z' => 'bra', 'BraA02t05791Z' => 'bra', 'BraA03t10483Z' => 'bra', 'BraA05t19795Z' => 'bra', 'BraA05t20276Z' => 'bra', 'BraA09t40827Z' => 'bra', 'BraA10t43750Z' => 'bra', 'BraA10t43751Z' => 'bra', 'BraA10t45370Z' => 'bra', 'C02p00400' => 'bna', 'C02p12460' => 'bna', 'C03p13680' => 'bna', 'C04p10270' => 'bna', 'C04p17500' => 'bna', 'C08p37010' => 'bna', 'C09p51880' => 'bna', 'C09p51890' => 'bna', 'C09p74300' => 'bna', 'CAN.G179.26' => 'can', 'CAN.G3384.1' => 'can', 'CAN.G394.68' => 'can', 'CAN.G907.13' => 'can', 'CANSAT11G0012' => 'cansat', 'CANSAT25G1586' => 'cansat', 'CANSAT35G0735' => 'cansat', 'CANSAT54G0556' => 'cansat', 'CANSAT64G0356' => 'cansat', 'CANSAT78G2042' => 'cansat', 'CARHR125920' => 'chi', 'CARHR131910' => 'chi', 'CARHR172390' => 'chi', 'CARHR211140' => 'chi', 'CARHR285850' => 'chi', 'CARHR285860' => 'chi', 'Carub.0004s1347' => 'cru', 'Carub.0004s1960' => 'cru', 'Carub.0005s2880' => 'cru', 'Carub.0006s0107' => 'cru', 'Carub.0008s2015' => 'cru', 'Carub.0008s2016' => 'cru', 'Carub.0008s2017' => 'cru', 'Ca_01315_v3' => 'car', 'Ca_05063_v3' => 'car', 'Ca_10231_v3' => 'car', 'Ca_10913_v3' => 'car', 'Ca_19156_v3' => 'car', 'Ca_23644_v3' => 'car', 'Ca_26735_v3' => 'car', 'Cc01_g13130' => 'ccan', 'Cc02_g21690' => 'ccan', 'Cc03_g03600' => 'ccan', 'Cc06_g02510' => 'ccan', 'CDE02G1265' => 'cde', 'CDE05G0415' => 'cde', 'CDE08G1082' => 'cde', 'Cfa005780' => 'cfa', 'Cfa011522' => 'cfa', 'Cfa011523' => 'cfa', 'Cfa015627' => 'cfa', 'Cfa017359' => 'cfa', 'Ciclev10005687m.g' => 'ccl', 'Ciclev10012173m.g' => 'ccl', 'Ciclev10021621m.g' => 'ccl', 'Ciclev10028968m.g' => 'ccl', 'Ciclev10029907m.g' => 'ccl', 'CiPaw.01G164800' => 'cil', 'CiPaw.07G083700' => 'cil', 'CiPaw.07G127000' => 'cil', 'CiPaw.07G136900' => 'cil', 'CiPaw.08G081700' => 'cil', 'CiPaw.09G194600' => 'cil', 'CiPaw.10G146500' => 'cil', 'CiPaw.13G091500' => 'cil', 'CiPaw.13G091600' => 'cil', 'ClCG00G003390' => 'cla', 'ClCG01G007220' => 'cla', 'ClCG03G001370' => 'cla', 'ClCG04G008100' => 'cla', 'ClCG06G006110' => 'cla', 'ClCG06G006130' => 'cla', 'ClCG10G021210' => 'cla', 'COL.COLO4_07648' => 'col', 'COL.COLO4_07650' => 'col', 'COL.COLO4_07651' => 'col', 'COL.COLO4_14780' => 'col', 'COL.COLO4_18546' => 'col', 'COL.COLO4_18547' => 'col', 'COL.COLO4_23103' => 'col', 'COL.COLO4_30419' => 'col', 'COL.COLO4_34232' => 'col', 'Cpa.g.sc169.20' => 'cpa', 'Cpa.g.sc57.45' => 'cpa', 'Cpa.g.sc58.124' => 'cpa', 'Cpa.g.sc58.125' => 'cpa', 'Cpa.g.sc81.118' => 'cpa', 'Cpa.g.sc81.119' => 'cpa', 'Cre12.g524700' => 'cre', 'CsaV3_1G034430' => 'csa', 'CsaV3_1G034440' => 'csa', 'CsaV3_1G034450' => 'csa', 'CsaV3_3G034830' => 'csa', 'CsaV3_4G025090' => 'csa', 'CsaV3_5G018660' => 'csa', 'CsaV3_6G038160' => 'csa', 'CSS0003447' => 'camsi', 'CSS0017840' => 'camsi', 'CSS0019260' => 'camsi', 'CSS0040375' => 'camsi', 'CSS0042533' => 'camsi', 'DCAR_005960' => 'dca', 'DCAR_012104' => 'dca', 'DCAR_012105' => 'dca', 'DCAR_012293' => 'dca', 'DCAR_015632' => 'dca', 'DCAR_024602' => 'dca', 'DCAR_028752' => 'dca', 'Dinv06261' => 'din', 'Dinv13982' => 'din', 'Dinv17029' => 'din', 'Dinv18463' => 'din', 'Dinv33181' => 'din', 'Dinv35585' => 'din', 'Dinv37161' => 'din', 'Dinv42977' => 'din', 'Dinv43122' => 'din', 'Dinv44517' => 'din', 'Duzib093G0256' => 'dzi', 'Duzib106G1254' => 'dzi', 'Duzib128G1789' => 'dzi', 'Duzib133G0633' => 'dzi', 'Duzib138G0510' => 'dzi', 'Duzib150G1084' => 'dzi', 'Duzib168G0488' => 'dzi', 'Duzib168G1523' => 'dzi', 'Duzib170G0133' => 'dzi', 'ECA234G1433' => 'eca', 'ECA236G1432' => 'eca', 'ECA236G2256' => 'eca', 'ECA236G2365' => 'eca', 'ECA236G4830' => 'eca', 'ECA248G1505' => 'eca', 'EL10Ac3g06431' => 'bvu', 'EL10Ac5g12577' => 'bvu', 'EL10Ac6g13533' => 'bvu', 'EL10Ac7g16045' => 'bvu', 'Eucgr.A01281' => 'egr', 'Eucgr.B02326' => 'egr', 'Eucgr.H03532' => 'egr', 'Eucgr.K00553' => 'egr', 'Eucgr.K03116' => 'egr', 'FAN02G3963' => 'fan', 'FAN05G0438' => 'fan', 'FAN09G2434' => 'fan', 'FAN12G3984' => 'fan', 'FAN14G0798' => 'fan', 'FAN17G0652' => 'fan', 'FAN19G1988' => 'fan', 'FAN22G0632' => 'fan', 'FAN23G0387' => 'fan', 'FAN26G1323' => 'fan', 'FAN28G0666' => 'fan', 'FvH4_1g26080' => 'fve', 'FvH4_3g36780' => 'fve', 'FvH4_4g15270' => 'fve', 'FvH4_6g13490' => 'fve', 'Glyma.01G098700' => 'gma', 'Glyma.03G065900' => 'gma', 'Glyma.03G073754' => 'gma', 'Glyma.03G073758' => 'gma', 'Glyma.03G083200' => 'gma', 'Glyma.03G225500' => 'gma', 'Glyma.05G037766' => 'gma', 'Glyma.07G133500' => 'gma', 'Glyma.10G139400' => 'gma', 'Glyma.10G248900' => 'gma', 'Glyma.11G137800' => 'gma', 'Glyma.12G061300' => 'gma', 'Glyma.13G337900' => 'gma', 'Glyma.15G036600' => 'gma', 'Glyma.18G182800' => 'gma', 'Glyma.19G222500' => 'gma', 'Glyma.20G144800' => 'gma', 'Gohir.A01G222000' => 'ghi', 'Gohir.A03G044000' => 'ghi', 'Gohir.A03G044100' => 'ghi', 'Gohir.A04G083100' => 'ghi', 'Gohir.A07G127200' => 'ghi', 'Gohir.A07G132400' => 'ghi', 'Gohir.A08G000700' => 'ghi', 'Gohir.A11G327300' => 'ghi', 'Gohir.D01G211500' => 'ghi', 'Gohir.D03G123400' => 'ghi', 'Gohir.D03G123500' => 'ghi', 'Gohir.D04G121800' => 'ghi', 'Gohir.D07G131500' => 'ghi', 'Gohir.D07G136600' => 'ghi', 'Gohir.D08G011600' => 'ghi', 'Gohir.D11G346200' => 'ghi', 'Gorai.001G142800' => 'gra', 'Gorai.001G148700' => 'gra', 'Gorai.002G257300' => 'gra', 'Gorai.003G130000' => 'gra', 'Gorai.003G130100' => 'gra', 'Gorai.004G005300' => 'gra', 'Gorai.007G376500' => 'gra', 'Gorai.012G104700' => 'gra', 'GSVIVG01017946001' => 'vvi', 'GSVIVG01024928001' => 'vvi', 'GSVIVG01028227001' => 'vvi', 'GSVIVG01034151001' => 'vvi', 'HanXRQChr05g0135031' => 'han', 'HanXRQChr05g0135041' => 'han', 'HanXRQChr05g0140021' => 'han', 'HanXRQChr06g0178981' => 'han', 'HanXRQChr07g0188251' => 'han', 'HanXRQChr08g0235311' => 'han', 'HanXRQChr09g0271011' => 'han', 'HanXRQChr10g0293321' => 'han', 'HanXRQChr13g0388171' => 'han', 'Haze_00916' => 'cav', 'Haze_05063' => 'cav', 'Haze_20814' => 'cav', 'Haze_24128' => 'cav', 'Hma1.2p1_0745F.1_g212010' => 'hma', 'Hma1.2p1_0757F.1_g213260' => 'hma', 'Hma1.2p1_0936F.1_g238840' => 'hma', 'Hma1.2p1_1735F.1_g299890' => 'hma', 'Hma1.2p1_1861F.1_g305685' => 'hma', 'HPP92_003397' => 'vpl', 'HPP92_012597' => 'vpl', 'HPP92_015520' => 'vpl', 'HPP92_015539' => 'vpl', 'HPP92_020373' => 'vpl', 'Hund04938' => 'sun', 'Hund10677' => 'sun', 'Hund11033' => 'sun', 'Hund12155' => 'sun', 'Lalb_Chr01g0022551' => 'lal', 'Lalb_Chr03g0042341' => 'lal', 'Lalb_Chr07g0192931' => 'lal', 'Lalb_Chr12g0209551' => 'lal', 'Lalb_Chr19g0125251' => 'lal', 'Lalb_Chr19g0137891' => 'lal', 'Lalb_Chr21g0304641' => 'lal', 'Lalb_Chr21g0309881' => 'lal', 'Lj1A5T12' => 'lonja', 'Lj1C148G10' => 'lonja', 'Lj2A93T83' => 'lonja', 'Lj3A738G68' => 'lonja', 'Lj3C966T1' => 'lonja', 'Lj3g0018958' => 'lja', 'Lj3g0021831' => 'lja', 'Lj3g0025443' => 'lja', 'Lj4g0026809' => 'lja', 'Lj5g0012558' => 'lja', 'Lj5g0021586' => 'lja', 'Lsat_1_v5_gn_5_156840' => 'lsa', 'Lsat_1_v5_gn_8_73460' => 'lsa', 'Lsat_1_v5_gn_8_73481' => 'lsa', 'Lsat_1_v5_gn_9_31601' => 'lsa', 'Lsat_1_v5_gn_9_77320' => 'lsa', 'Manes.01G171300' => 'mes', 'Manes.01G171400' => 'mes', 'Manes.01G236100' => 'mes', 'Manes.02G130500' => 'mes', 'Manes.02G130600' => 'mes', 'Manes.03G180200' => 'mes', 'Manes.05G007000' => 'mes', 'Manes.08G084400' => 'mes', 'Manes.09G092600' => 'mes', 'Manes.15G027900' => 'mes', 'MBI04_g40948_MAGBIO' => 'mbi', 'MBI14_g12123_MAGBIO' => 'mbi', 'MBI18_g28915_MAGBIO' => 'mbi', 'MCO09G053' => 'mco', 'MCO11G782' => 'mco', 'MCO15G215' => 'mco', 'MD03G1088500' => 'mdo', 'MD03G1088600' => 'mdo', 'MD04G1130800' => 'mdo', 'MD09G1291700' => 'mdo', 'MD11G1097500' => 'mdo', 'MD11G1097600' => 'mdo', 'MD12G1143900' => 'mdo', 'MD13G1191400' => 'mdo', 'MD16G1191500' => 'mdo', 'Medtr1g085570' => 'mtr', 'Medtr1g104610' => 'mtr', 'Medtr2g097520' => 'mtr', 'Medtr4g021800' => 'mtr', 'Medtr4g021825' => 'mtr', 'Medtr4g064270' => 'mtr', 'Medtr4g064380' => 'mtr', 'Medtr7g062150' => 'mtr', 'MELO3C003138.2' => 'cme', 'MELO3C005187.2' => 'cme', 'MELO3C009252.2' => 'cme', 'MELO3C014481.2' => 'cme', 'MELO3C020616.2' => 'cme', 'MELO3C020617.2' => 'cme', 'MELO3C020618.2' => 'cme', 'Migut.G00328' => 'egut', 'Migut.J00320' => 'egut', 'Migut.L01000' => 'egut', 'Migut.L01953' => 'egut', 'MSTRG.10253' => 'ama', 'MSTRG.19077' => 'ama', 'MSTRG.26780' => 'ama', 'MSTRG.4023' => 'ama', 'MSTRG.5655' => 'ama', 'MSTRG.9992' => 'ama', 'Nitab4.5_0000043g0310' => 'nta', 'Nitab4.5_0000463g0080' => 'nta', 'Nitab4.5_0000705g0170' => 'nta', 'Nitab4.5_0001326g0060' => 'nta', 'Nitab4.5_0001628g0030' => 'nta', 'Nitab4.5_0002103g0110' => 'nta', 'Nitab4.5_0002946g0030' => 'nta', 'Nitab4.5_0004639g0030' => 'nta', 'Nn2g11149' => 'nnu', 'Nn2g13389' => 'nnu', 'Nn4g25326' => 'nnu', 'Nn4g26290' => 'nnu', 'Nn5g29865' => 'nnu', 'Oeu004163.1' => 'oeu', 'Oeu006901.1' => 'oeu', 'Oeu010096.1' => 'oeu', 'Oeu024340.1' => 'oeu', 'Oeu048369.1' => 'oeu', 'Os01g0973000' => 'osa', 'Os03g0273800' => 'osa', 'Os03g0701200' => 'osa', 'Os03g0834050' => 'osa', 'Os07g0634400' => 'osa', 'Peaxi162Scf00092g01414' => 'pax', 'Peaxi162Scf00165g00818' => 'pax', 'Peaxi162Scf00309g00516' => 'pax', 'Peaxi162Scf00774g00218' => 'pax', 'PGR004G1824' => 'pgr', 'PGR004G2606' => 'pgr', 'PGR031G2716' => 'pgr', 'PGR102G2460' => 'pgr', 'PGR142G2599' => 'pgr', 'PGSC0003DMG400000843' => 'stu', 'PGSC0003DMG400008829' => 'stu', 'PGSC0003DMG400030418' => 'stu', 'PGSC0003DMG400031834' => 'stu', 'PGSC0003DMG401028300' => 'stu', 'PGSC0003DMG402028300' => 'stu', 'Phvul.001G219300' => 'pvu', 'Phvul.007G056000' => 'pvu', 'Phvul.007G208000' => 'pvu', 'Phvul.008G119500' => 'pvu', 'Phvul.010G011200' => 'pvu', 'Phvul.010G014800' => 'pvu', 'Phvul.011G062900' => 'pvu', 'Phvul.L007043' => 'pvu', 'Potri.001G242300' => 'ptr', 'Potri.002G185300' => 'ptr', 'Potri.006G086900' => 'ptr', 'Potri.008G151700' => 'ptr', 'Potri.009G033500' => 'ptr', 'Potri.010G089300' => 'ptr', 'Potri.014G110800' => 'ptr', 'Pp3c27_8130' => 'ppa', 'Pp3c6_27410' => 'ppa', 'PRCOL_00001659' => 'pco', 'PRCOL_00001927' => 'pco', 'PRCOL_00003649' => 'pco', 'Prupe.1G011600' => 'ppe', 'Prupe.3G000800' => 'ppe', 'Prupe.3G001100' => 'ppe', 'Prupe.6G072700' => 'ppe', 'Prupe.6G072800' => 'ppe', 'Prupe.6G257300' => 'ppe', 'Prupe.8G033000' => 'ppe', 'Psat0s2633g0080' => 'psa', 'Psat0s3396g0080' => 'psa', 'Psat0s3396g0200' => 'psa', 'Psat3g139080' => 'psa', 'Psat5g285080' => 'psa', 'Psat6g157760' => 'psa', 'Psat6g208440' => 'psa', 'Psat7g215320' => 'psa', 'Psat7g215400' => 'psa', 'Psat7g235600' => 'psa', 'Psat7g235760' => 'psa', 'PSO063G4603' => 'pso', 'PSO210G0182' => 'pso', 'PSO210G0196' => 'pso', 'PSO339G0394' => 'pso', 'PSO339G4127' => 'pso', 'PSO513G0064' => 'pso', 'PSO761G0079' => 'pso', 'QL01p031003' => 'qlo', 'QL01p031078' => 'qlo', 'QL06p003004' => 'qlo', 'QL07p048731' => 'qlo', 'QL09p037427' => 'qlo', 'RcHm_v2.0_Chr3g0466361' => 'rch', 'RcHm_v2.0_Chr3g0485571' => 'rch', 'RcHm_v2.0_Chr4g0416551' => 'rch', 'RcHm_v2.0_Chr5g0065831' => 'rch', 'Rhsim01G0230500' => 'rsi', 'Rhsim05G0194000' => 'rsi', 'Rhsim08G0250400' => 'rsi', 'Sabra02G0131000' => 'sbr', 'Sabra06G0066300' => 'sbr', 'Sabra08G0115500' => 'sbr', 'Sabra09G0023900' => 'sbr', 'Sabra10G0054000' => 'sbr', 'Sabra14G0081500' => 'sbr', 'Sabra16G0147100' => 'sbr', 'SalBow2G2957' => 'sbo', 'SalBow4G3320' => 'sbo', 'SalBow8G1894' => 'sbo', 'Sc07g0007950' => 'sci', 'Sc12g0001360' => 'sci', 'Sc13g0004330' => 'sci', 'Sc20g0005010' => 'sci', 'Sed0000361' => 'sed', 'Sed0001706' => 'sed', 'Sed0002422' => 'sed', 'Sed0004029' => 'sed', 'Sed0004602' => 'sed', 'Sed0004943' => 'sed', 'Sed0008646' => 'sed', 'Sed0023313' => 'sed', 'Sed0024843' => 'sed', 'SEGI_00081' => 'sgi', 'SEGI_00947' => 'sgi', 'SEGI_04046' => 'sgi', 'SEGI_06880' => 'sgi', 'SEGI_09736' => 'sgi', 'SEGI_12741' => 'sgi', 'SEGI_14530' => 'sgi', 'SEGI_20705' => 'sgi', 'SEGI_26088' => 'sgi', 'SEGI_28323' => 'sgi', 'SEGI_33343' => 'sgi', 'SGA_v2.0_scaffold126G33775' => 'sas', 'SGA_v2.0_scaffold2G01337' => 'sas', 'SGA_v2.0_scaffold38G15006' => 'sas', 'SGA_v2.0_scaffold39G15264' => 'sas', 'SGA_v2.0_scaffold453G51880' => 'sas', 'SHI12696' => 'shi', 'SMO367G1096' => 'smo', 'Solyc01g068630.3' => 'sly', 'Solyc05g011880.3' => 'sly', 'Solyc06g076300.3' => 'sly', 'Solyc09g010940.4' => 'sly', 'Solyc09g075890.3' => 'sly', 'Sopen01g030560' => 'spe', 'Sopen05g006630' => 'spe', 'Sopen06g032720' => 'spe', 'Sopen09g005660' => 'spe', 'Sopen09g030690' => 'spe', 'Sp4g14540' => 'spa', 'Sp4g20030' => 'spa', 'Sp5g01320' => 'spa', 'Sp6g21170' => 'spa', 'Sp6g21180' => 'spa', 'Sp6g21190' => 'spa', 'Sp6g40220' => 'spa', 'TAR362G0122' => 'tar', 'TAR362G1338' => 'tar', 'TAR369G0590' => 'tar', 'TAR371G0824' => 'tar', 'TAR622G1429' => 'tar', 'TAR623G0734' => 'tar', 'TAR625G0441' => 'tar', 'TAR629G0976' => 'tar', 'TAR633G1195' => 'tar', 'TAR636G2660' => 'tar', 'THA.LOC104799440' => 'tha', 'THA.LOC104800966' => 'tha', 'THA.LOC104806559' => 'tha', 'THA.LOC104810765' => 'tha', 'THA.LOC104816266' => 'tha', 'THA.LOC104817419' => 'tha', 'THA.LOC104827021' => 'tha', 'Thecc.01G327400' => 'tca', 'Thecc.04G229200' => 'tca', 'Thecc.05G037400' => 'tca', 'Thecc.09G318600' => 'tca', 'Thecc.09G318700' => 'tca', 'Thhalv10006238m.g' => 'esa', 'Thhalv10014321m.g' => 'esa', 'Thhalv10014335m.g' => 'esa', 'Thhalv10015826m.g' => 'esa', 'Thhalv10017107m.g' => 'esa', 'Thhalv10017180m.g' => 'esa', 'Thhalv10029339m.g' => 'esa', 'TPR.G1699' => 'tpr', 'TPR.G23609' => 'tpr', 'TPR.G3081' => 'tpr', 'TPR.G40397' => 'tpr', 'TPR.G5522' => 'tpr', 'TPR.G5618' => 'tpr', 'TPR.G5626' => 'tpr', 'TWI09G1632' => 'twi', 'TWI23G1230' => 'twi', 'TWI53G1064' => 'twi', 'TWI59G0751' => 'twi', 'TWI74G0947' => 'twi', 'TWI77G0337' => 'twi', 'TWI79G1254' => 'twi', 'unitig_0.g2341' => 'ugi', 'unitig_26.g10006' => 'ugi', 'unitig_26.g10008' => 'ugi', 'unitig_26.g9192' => 'ugi', 'vmacro14547' => 'vma', 'vmacro15333' => 'vma', 'vmacro18743' => 'vma', 'vmacro20166' => 'vma', 'VMungo0331G0523' => 'vmu', 'VMungo0331G1202' => 'vmu', 'VMungo0720G1228' => 'vmu', 'VMungo0720G1514' => 'vmu', 'VMungo1080G0169' => 'vmu', 'VMungo1127G1475' => 'vmu', 'VMungo1383G1208' => 'vmu', 'VMungo1383G1698' => 'vmu', 'Zm00001eb012270' => 'zma', 'Zm00001eb054100' => 'zma', 'Zm00001eb063350' => 'zma', 'Zm00001eb328560' => 'zma', 'Zm00001eb342820' => 'zma', 'Zm00001eb362210' => 'zma', 'Zm00001eb397730' => 'zma', 'Zm00001eb399750' => 'zma' ) $gf_id = 'HOM05D000959' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000959' ) $data_identifier = 'HOM05D000959' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 5, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 5, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 10, 'mbi' => (int) 3, 'mco' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 2, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 3, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 11, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399750' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000959', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '622', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p07100' => 'bna', 'A03p11720' => 'bna', 'A05p08300' => 'bna', 'A05p13380' => 'bna', 'A09p54130' => 'bna', 'A10p16690' => 'bna', 'A10p16700' => 'bna', 'A10p33390' => 'bna', 'Aa31LG10G16020' => 'aar', 'Aa31LG1G11810' => 'aar', 'Aa31LG1G11830' => 'aar', 'Aa31LG1G22510' => 'aar', 'Aa31LG5G4890' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5793' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2310' => 'aag', 'Actinidia08499' => 'ach', 'Actinidia11262' => 'ach', 'Actinidia23926' => 'ach', 'Actinidia34420' => 'ach', 'Actinidia36970' => 'ach', 'Ah.02g111220' => 'amhyb', 'Ah.15g097750' => 'amhyb', 'AL4G27500' => 'aly', 'AL6G11470' => 'aly', 'AL8G35950' => 'aly', 'AL8G35960' => 'aly', 'AL8G35970' => 'aly', 'Aqoxy1G00912' => 'aox', 'Aqoxy2G02253' => 'aox', 'Aqoxy2G02411' => 'aox', 'Aqoxy5G00485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BZ66YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K8ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM4FUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6BF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HFV7XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25JBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0YNNV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MAKK6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P70IT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP2Z6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V61LZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YWP64R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3S9AI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7PGHH' => 'arhy', 'AT2G32150' => 'ath', 'AT3G62040' => 'ath', 'AT5G02230' => 'ath', 'AT5G59480' => 'ath', 'AT5G59490' => 'ath', 'ATR0332G060' => 'atr', 'ATR0559G190' => 'atr', 'ATR0693G294' => 'atr', 'Atru.chr3.3975' => 'acertr', 'Atru.chr3.3976' => 'acertr', 'Atru.chr3.3977' => 'acertr', 'Atru.chr4.2498' => 'acertr', 'Atru.chr5.838' => 'acertr', 'Atru.chr8.1990' => 'acertr', 'Atru.chr8.1991' => 'acertr', 'Atru.chr8.1992' => 'acertr', 'AUR62001759' => 'cqu', 'AUR62009545' => 'cqu', 'AUR62010474' => 'cqu', 'AUR62025820' => 'cqu', 'AUR62030422' => 'cqu', 'AUR62033605' => 'cqu', 'AUR62038615' => 'cqu', 'AUR62041347' => 'cqu', 'BcaB01g04574' => 'bca', 'BcaB02g09263' => 'bca', 'BcaB02g10453' => 'bca', 'BcaB05g22513' => 'bca', 'BcaB08g36253' => 'bca', 'BcaB08g36254' => 'bca', 'BcaC01g06519' => 'bca', 'BcaC02g11889' => 'bca', 'BcaC03g14010' => 'bca', 'BcaC03g18439' => 'bca', 'BcaC04g19765' => 'bca', 'BcaC09g48432' => 'bca', 'BcaNung07302' => 'bca', 'BolC2t06040H' => 'bol', 'BolC2t07346H' => 'bol', 'BolC3t13817H' => 'bol', 'BolC4t22625H' => 'bol', 'BolC4t23297H' => 'bol', 'BolC8t51278H' => 'bol', 'BolC9t58050H' => 'bol', 'BolC9t58051H' => 'bol', 'BolC9t60163H' => 'bol', 'BraA02t04712Z' => 'bra', 'BraA02t05791Z' => 'bra', 'BraA03t10483Z' => 'bra', 'BraA05t19795Z' => 'bra', 'BraA05t20276Z' => 'bra', 'BraA09t40827Z' => 'bra', 'BraA10t43750Z' => 'bra', 'BraA10t43751Z' => 'bra', 'BraA10t45370Z' => 'bra', 'C02p00400' => 'bna', 'C02p12460' => 'bna', 'C03p13680' => 'bna', 'C04p10270' => 'bna', 'C04p17500' => 'bna', 'C08p37010' => 'bna', 'C09p51880' => 'bna', 'C09p51890' => 'bna', 'C09p74300' => 'bna', 'CAN.G179.26' => 'can', 'CAN.G3384.1' => 'can', 'CAN.G394.68' => 'can', 'CAN.G907.13' => 'can', 'CANSAT11G0012' => 'cansat', 'CANSAT25G1586' => 'cansat', 'CANSAT35G0735' => 'cansat', 'CANSAT54G0556' => 'cansat', 'CANSAT64G0356' => 'cansat', 'CANSAT78G2042' => 'cansat', 'CARHR125920' => 'chi', 'CARHR131910' => 'chi', 'CARHR172390' => 'chi', 'CARHR211140' => 'chi', 'CARHR285850' => 'chi', 'CARHR285860' => 'chi', 'Carub.0004s1347' => 'cru', 'Carub.0004s1960' => 'cru', 'Carub.0005s2880' => 'cru', 'Carub.0006s0107' => 'cru', 'Carub.0008s2015' => 'cru', 'Carub.0008s2016' => 'cru', 'Carub.0008s2017' => 'cru', 'Ca_01315_v3' => 'car', 'Ca_05063_v3' => 'car', 'Ca_10231_v3' => 'car', 'Ca_10913_v3' => 'car', 'Ca_19156_v3' => 'car', 'Ca_23644_v3' => 'car', 'Ca_26735_v3' => 'car', 'Cc01_g13130' => 'ccan', 'Cc02_g21690' => 'ccan', 'Cc03_g03600' => 'ccan', 'Cc06_g02510' => 'ccan', 'CDE02G1265' => 'cde', 'CDE05G0415' => 'cde', 'CDE08G1082' => 'cde', 'Cfa005780' => 'cfa', 'Cfa011522' => 'cfa', 'Cfa011523' => 'cfa', 'Cfa015627' => 'cfa', 'Cfa017359' => 'cfa', 'Ciclev10005687m.g' => 'ccl', 'Ciclev10012173m.g' => 'ccl', 'Ciclev10021621m.g' => 'ccl', 'Ciclev10028968m.g' => 'ccl', 'Ciclev10029907m.g' => 'ccl', 'CiPaw.01G164800' => 'cil', 'CiPaw.07G083700' => 'cil', 'CiPaw.07G127000' => 'cil', 'CiPaw.07G136900' => 'cil', 'CiPaw.08G081700' => 'cil', 'CiPaw.09G194600' => 'cil', 'CiPaw.10G146500' => 'cil', 'CiPaw.13G091500' => 'cil', 'CiPaw.13G091600' => 'cil', 'ClCG00G003390' => 'cla', 'ClCG01G007220' => 'cla', 'ClCG03G001370' => 'cla', 'ClCG04G008100' => 'cla', 'ClCG06G006110' => 'cla', 'ClCG06G006130' => 'cla', 'ClCG10G021210' => 'cla', 'COL.COLO4_07648' => 'col', 'COL.COLO4_07650' => 'col', 'COL.COLO4_07651' => 'col', 'COL.COLO4_14780' => 'col', 'COL.COLO4_18546' => 'col', 'COL.COLO4_18547' => 'col', 'COL.COLO4_23103' => 'col', 'COL.COLO4_30419' => 'col', 'COL.COLO4_34232' => 'col', 'Cpa.g.sc169.20' => 'cpa', 'Cpa.g.sc57.45' => 'cpa', 'Cpa.g.sc58.124' => 'cpa', 'Cpa.g.sc58.125' => 'cpa', 'Cpa.g.sc81.118' => 'cpa', 'Cpa.g.sc81.119' => 'cpa', 'Cre12.g524700' => 'cre', 'CsaV3_1G034430' => 'csa', 'CsaV3_1G034440' => 'csa', 'CsaV3_1G034450' => 'csa', 'CsaV3_3G034830' => 'csa', 'CsaV3_4G025090' => 'csa', 'CsaV3_5G018660' => 'csa', 'CsaV3_6G038160' => 'csa', 'CSS0003447' => 'camsi', 'CSS0017840' => 'camsi', 'CSS0019260' => 'camsi', 'CSS0040375' => 'camsi', 'CSS0042533' => 'camsi', 'DCAR_005960' => 'dca', 'DCAR_012104' => 'dca', 'DCAR_012105' => 'dca', 'DCAR_012293' => 'dca', 'DCAR_015632' => 'dca', 'DCAR_024602' => 'dca', 'DCAR_028752' => 'dca', 'Dinv06261' => 'din', 'Dinv13982' => 'din', 'Dinv17029' => 'din', 'Dinv18463' => 'din', 'Dinv33181' => 'din', 'Dinv35585' => 'din', 'Dinv37161' => 'din', 'Dinv42977' => 'din', 'Dinv43122' => 'din', 'Dinv44517' => 'din', 'Duzib093G0256' => 'dzi', 'Duzib106G1254' => 'dzi', 'Duzib128G1789' => 'dzi', 'Duzib133G0633' => 'dzi', 'Duzib138G0510' => 'dzi', 'Duzib150G1084' => 'dzi', 'Duzib168G0488' => 'dzi', 'Duzib168G1523' => 'dzi', 'Duzib170G0133' => 'dzi', 'ECA234G1433' => 'eca', 'ECA236G1432' => 'eca', 'ECA236G2256' => 'eca', 'ECA236G2365' => 'eca', 'ECA236G4830' => 'eca', 'ECA248G1505' => 'eca', 'EL10Ac3g06431' => 'bvu', 'EL10Ac5g12577' => 'bvu', 'EL10Ac6g13533' => 'bvu', 'EL10Ac7g16045' => 'bvu', 'Eucgr.A01281' => 'egr', 'Eucgr.B02326' => 'egr', 'Eucgr.H03532' => 'egr', 'Eucgr.K00553' => 'egr', 'Eucgr.K03116' => 'egr', 'FAN02G3963' => 'fan', 'FAN05G0438' => 'fan', 'FAN09G2434' => 'fan', 'FAN12G3984' => 'fan', 'FAN14G0798' => 'fan', 'FAN17G0652' => 'fan', 'FAN19G1988' => 'fan', 'FAN22G0632' => 'fan', 'FAN23G0387' => 'fan', 'FAN26G1323' => 'fan', 'FAN28G0666' => 'fan', 'FvH4_1g26080' => 'fve', 'FvH4_3g36780' => 'fve', 'FvH4_4g15270' => 'fve', 'FvH4_6g13490' => 'fve', 'Glyma.01G098700' => 'gma', 'Glyma.03G065900' => 'gma', 'Glyma.03G073754' => 'gma', 'Glyma.03G073758' => 'gma', 'Glyma.03G083200' => 'gma', 'Glyma.03G225500' => 'gma', 'Glyma.05G037766' => 'gma', 'Glyma.07G133500' => 'gma', 'Glyma.10G139400' => 'gma', 'Glyma.10G248900' => 'gma', 'Glyma.11G137800' => 'gma', 'Glyma.12G061300' => 'gma', 'Glyma.13G337900' => 'gma', 'Glyma.15G036600' => 'gma', 'Glyma.18G182800' => 'gma', 'Glyma.19G222500' => 'gma', 'Glyma.20G144800' => 'gma', 'Gohir.A01G222000' => 'ghi', 'Gohir.A03G044000' => 'ghi', 'Gohir.A03G044100' => 'ghi', 'Gohir.A04G083100' => 'ghi', 'Gohir.A07G127200' => 'ghi', 'Gohir.A07G132400' => 'ghi', 'Gohir.A08G000700' => 'ghi', 'Gohir.A11G327300' => 'ghi', 'Gohir.D01G211500' => 'ghi', 'Gohir.D03G123400' => 'ghi', 'Gohir.D03G123500' => 'ghi', 'Gohir.D04G121800' => 'ghi', 'Gohir.D07G131500' => 'ghi', 'Gohir.D07G136600' => 'ghi', 'Gohir.D08G011600' => 'ghi', 'Gohir.D11G346200' => 'ghi', 'Gorai.001G142800' => 'gra', 'Gorai.001G148700' => 'gra', 'Gorai.002G257300' => 'gra', 'Gorai.003G130000' => 'gra', 'Gorai.003G130100' => 'gra', 'Gorai.004G005300' => 'gra', 'Gorai.007G376500' => 'gra', 'Gorai.012G104700' => 'gra', 'GSVIVG01017946001' => 'vvi', 'GSVIVG01024928001' => 'vvi', 'GSVIVG01028227001' => 'vvi', 'GSVIVG01034151001' => 'vvi', 'HanXRQChr05g0135031' => 'han', 'HanXRQChr05g0135041' => 'han', 'HanXRQChr05g0140021' => 'han', 'HanXRQChr06g0178981' => 'han', 'HanXRQChr07g0188251' => 'han', 'HanXRQChr08g0235311' => 'han', 'HanXRQChr09g0271011' => 'han', 'HanXRQChr10g0293321' => 'han', 'HanXRQChr13g0388171' => 'han', 'Haze_00916' => 'cav', 'Haze_05063' => 'cav', 'Haze_20814' => 'cav', 'Haze_24128' => 'cav', 'Hma1.2p1_0745F.1_g212010' => 'hma', 'Hma1.2p1_0757F.1_g213260' => 'hma', 'Hma1.2p1_0936F.1_g238840' => 'hma', 'Hma1.2p1_1735F.1_g299890' => 'hma', 'Hma1.2p1_1861F.1_g305685' => 'hma', 'HPP92_003397' => 'vpl', 'HPP92_012597' => 'vpl', 'HPP92_015520' => 'vpl', 'HPP92_015539' => 'vpl', 'HPP92_020373' => 'vpl', 'Hund04938' => 'sun', 'Hund10677' => 'sun', 'Hund11033' => 'sun', 'Hund12155' => 'sun', 'Lalb_Chr01g0022551' => 'lal', 'Lalb_Chr03g0042341' => 'lal', 'Lalb_Chr07g0192931' => 'lal', 'Lalb_Chr12g0209551' => 'lal', 'Lalb_Chr19g0125251' => 'lal', 'Lalb_Chr19g0137891' => 'lal', 'Lalb_Chr21g0304641' => 'lal', 'Lalb_Chr21g0309881' => 'lal', 'Lj1A5T12' => 'lonja', 'Lj1C148G10' => 'lonja', 'Lj2A93T83' => 'lonja', 'Lj3A738G68' => 'lonja', 'Lj3C966T1' => 'lonja', 'Lj3g0018958' => 'lja', 'Lj3g0021831' => 'lja', 'Lj3g0025443' => 'lja', 'Lj4g0026809' => 'lja', 'Lj5g0012558' => 'lja', 'Lj5g0021586' => 'lja', 'Lsat_1_v5_gn_5_156840' => 'lsa', 'Lsat_1_v5_gn_8_73460' => 'lsa', 'Lsat_1_v5_gn_8_73481' => 'lsa', 'Lsat_1_v5_gn_9_31601' => 'lsa', 'Lsat_1_v5_gn_9_77320' => 'lsa', 'Manes.01G171300' => 'mes', 'Manes.01G171400' => 'mes', 'Manes.01G236100' => 'mes', 'Manes.02G130500' => 'mes', 'Manes.02G130600' => 'mes', 'Manes.03G180200' => 'mes', 'Manes.05G007000' => 'mes', 'Manes.08G084400' => 'mes', 'Manes.09G092600' => 'mes', 'Manes.15G027900' => 'mes', 'MBI04_g40948_MAGBIO' => 'mbi', 'MBI14_g12123_MAGBIO' => 'mbi', 'MBI18_g28915_MAGBIO' => 'mbi', 'MCO09G053' => 'mco', 'MCO11G782' => 'mco', 'MCO15G215' => 'mco', 'MD03G1088500' => 'mdo', 'MD03G1088600' => 'mdo', 'MD04G1130800' => 'mdo', 'MD09G1291700' => 'mdo', 'MD11G1097500' => 'mdo', 'MD11G1097600' => 'mdo', 'MD12G1143900' => 'mdo', 'MD13G1191400' => 'mdo', 'MD16G1191500' => 'mdo', 'Medtr1g085570' => 'mtr', 'Medtr1g104610' => 'mtr', 'Medtr2g097520' => 'mtr', 'Medtr4g021800' => 'mtr', 'Medtr4g021825' => 'mtr', 'Medtr4g064270' => 'mtr', 'Medtr4g064380' => 'mtr', 'Medtr7g062150' => 'mtr', 'MELO3C003138.2' => 'cme', 'MELO3C005187.2' => 'cme', 'MELO3C009252.2' => 'cme', 'MELO3C014481.2' => 'cme', 'MELO3C020616.2' => 'cme', 'MELO3C020617.2' => 'cme', 'MELO3C020618.2' => 'cme', 'Migut.G00328' => 'egut', 'Migut.J00320' => 'egut', 'Migut.L01000' => 'egut', 'Migut.L01953' => 'egut', 'MSTRG.10253' => 'ama', 'MSTRG.19077' => 'ama', 'MSTRG.26780' => 'ama', 'MSTRG.4023' => 'ama', 'MSTRG.5655' => 'ama', 'MSTRG.9992' => 'ama', 'Nitab4.5_0000043g0310' => 'nta', 'Nitab4.5_0000463g0080' => 'nta', 'Nitab4.5_0000705g0170' => 'nta', 'Nitab4.5_0001326g0060' => 'nta', 'Nitab4.5_0001628g0030' => 'nta', 'Nitab4.5_0002103g0110' => 'nta', 'Nitab4.5_0002946g0030' => 'nta', 'Nitab4.5_0004639g0030' => 'nta', 'Nn2g11149' => 'nnu', 'Nn2g13389' => 'nnu', 'Nn4g25326' => 'nnu', 'Nn4g26290' => 'nnu', 'Nn5g29865' => 'nnu', 'Oeu004163.1' => 'oeu', 'Oeu006901.1' => 'oeu', 'Oeu010096.1' => 'oeu', 'Oeu024340.1' => 'oeu', 'Oeu048369.1' => 'oeu', 'Os01g0973000' => 'osa', 'Os03g0273800' => 'osa', 'Os03g0701200' => 'osa', 'Os03g0834050' => 'osa', 'Os07g0634400' => 'osa', 'Peaxi162Scf00092g01414' => 'pax', 'Peaxi162Scf00165g00818' => 'pax', 'Peaxi162Scf00309g00516' => 'pax', 'Peaxi162Scf00774g00218' => 'pax', 'PGR004G1824' => 'pgr', 'PGR004G2606' => 'pgr', 'PGR031G2716' => 'pgr', 'PGR102G2460' => 'pgr', 'PGR142G2599' => 'pgr', 'PGSC0003DMG400000843' => 'stu', 'PGSC0003DMG400008829' => 'stu', 'PGSC0003DMG400030418' => 'stu', 'PGSC0003DMG400031834' => 'stu', 'PGSC0003DMG401028300' => 'stu', 'PGSC0003DMG402028300' => 'stu', 'Phvul.001G219300' => 'pvu', 'Phvul.007G056000' => 'pvu', 'Phvul.007G208000' => 'pvu', 'Phvul.008G119500' => 'pvu', 'Phvul.010G011200' => 'pvu', 'Phvul.010G014800' => 'pvu', 'Phvul.011G062900' => 'pvu', 'Phvul.L007043' => 'pvu', 'Potri.001G242300' => 'ptr', 'Potri.002G185300' => 'ptr', 'Potri.006G086900' => 'ptr', 'Potri.008G151700' => 'ptr', 'Potri.009G033500' => 'ptr', 'Potri.010G089300' => 'ptr', 'Potri.014G110800' => 'ptr', 'Pp3c27_8130' => 'ppa', 'Pp3c6_27410' => 'ppa', 'PRCOL_00001659' => 'pco', 'PRCOL_00001927' => 'pco', 'PRCOL_00003649' => 'pco', 'Prupe.1G011600' => 'ppe', 'Prupe.3G000800' => 'ppe', 'Prupe.3G001100' => 'ppe', 'Prupe.6G072700' => 'ppe', 'Prupe.6G072800' => 'ppe', 'Prupe.6G257300' => 'ppe', 'Prupe.8G033000' => 'ppe', 'Psat0s2633g0080' => 'psa', 'Psat0s3396g0080' => 'psa', 'Psat0s3396g0200' => 'psa', 'Psat3g139080' => 'psa', 'Psat5g285080' => 'psa', 'Psat6g157760' => 'psa', 'Psat6g208440' => 'psa', 'Psat7g215320' => 'psa', 'Psat7g215400' => 'psa', 'Psat7g235600' => 'psa', 'Psat7g235760' => 'psa', 'PSO063G4603' => 'pso', 'PSO210G0182' => 'pso', 'PSO210G0196' => 'pso', 'PSO339G0394' => 'pso', 'PSO339G4127' => 'pso', 'PSO513G0064' => 'pso', 'PSO761G0079' => 'pso', 'QL01p031003' => 'qlo', 'QL01p031078' => 'qlo', 'QL06p003004' => 'qlo', 'QL07p048731' => 'qlo', 'QL09p037427' => 'qlo', 'RcHm_v2.0_Chr3g0466361' => 'rch', 'RcHm_v2.0_Chr3g0485571' => 'rch', 'RcHm_v2.0_Chr4g0416551' => 'rch', 'RcHm_v2.0_Chr5g0065831' => 'rch', 'Rhsim01G0230500' => 'rsi', 'Rhsim05G0194000' => 'rsi', 'Rhsim08G0250400' => 'rsi', 'Sabra02G0131000' => 'sbr', 'Sabra06G0066300' => 'sbr', 'Sabra08G0115500' => 'sbr', 'Sabra09G0023900' => 'sbr', 'Sabra10G0054000' => 'sbr', 'Sabra14G0081500' => 'sbr', 'Sabra16G0147100' => 'sbr', 'SalBow2G2957' => 'sbo', 'SalBow4G3320' => 'sbo', 'SalBow8G1894' => 'sbo', 'Sc07g0007950' => 'sci', 'Sc12g0001360' => 'sci', 'Sc13g0004330' => 'sci', 'Sc20g0005010' => 'sci', 'Sed0000361' => 'sed', 'Sed0001706' => 'sed', 'Sed0002422' => 'sed', 'Sed0004029' => 'sed', 'Sed0004602' => 'sed', 'Sed0004943' => 'sed', 'Sed0008646' => 'sed', 'Sed0023313' => 'sed', 'Sed0024843' => 'sed', 'SEGI_00081' => 'sgi', 'SEGI_00947' => 'sgi', 'SEGI_04046' => 'sgi', 'SEGI_06880' => 'sgi', 'SEGI_09736' => 'sgi', 'SEGI_12741' => 'sgi', 'SEGI_14530' => 'sgi', 'SEGI_20705' => 'sgi', 'SEGI_26088' => 'sgi', 'SEGI_28323' => 'sgi', 'SEGI_33343' => 'sgi', 'SGA_v2.0_scaffold126G33775' => 'sas', 'SGA_v2.0_scaffold2G01337' => 'sas', 'SGA_v2.0_scaffold38G15006' => 'sas', 'SGA_v2.0_scaffold39G15264' => 'sas', 'SGA_v2.0_scaffold453G51880' => 'sas', 'SHI12696' => 'shi', 'SMO367G1096' => 'smo', 'Solyc01g068630.3' => 'sly', 'Solyc05g011880.3' => 'sly', 'Solyc06g076300.3' => 'sly', 'Solyc09g010940.4' => 'sly', 'Solyc09g075890.3' => 'sly', 'Sopen01g030560' => 'spe', 'Sopen05g006630' => 'spe', 'Sopen06g032720' => 'spe', 'Sopen09g005660' => 'spe', 'Sopen09g030690' => 'spe', 'Sp4g14540' => 'spa', 'Sp4g20030' => 'spa', 'Sp5g01320' => 'spa', 'Sp6g21170' => 'spa', 'Sp6g21180' => 'spa', 'Sp6g21190' => 'spa', 'Sp6g40220' => 'spa', 'TAR362G0122' => 'tar', 'TAR362G1338' => 'tar', 'TAR369G0590' => 'tar', 'TAR371G0824' => 'tar', 'TAR622G1429' => 'tar', 'TAR623G0734' => 'tar', 'TAR625G0441' => 'tar', 'TAR629G0976' => 'tar', 'TAR633G1195' => 'tar', 'TAR636G2660' => 'tar', 'THA.LOC104799440' => 'tha', 'THA.LOC104800966' => 'tha', 'THA.LOC104806559' => 'tha', 'THA.LOC104810765' => 'tha', 'THA.LOC104816266' => 'tha', 'THA.LOC104817419' => 'tha', 'THA.LOC104827021' => 'tha', 'Thecc.01G327400' => 'tca', 'Thecc.04G229200' => 'tca', 'Thecc.05G037400' => 'tca', 'Thecc.09G318600' => 'tca', 'Thecc.09G318700' => 'tca', 'Thhalv10006238m.g' => 'esa', 'Thhalv10014321m.g' => 'esa', 'Thhalv10014335m.g' => 'esa', 'Thhalv10015826m.g' => 'esa', 'Thhalv10017107m.g' => 'esa', 'Thhalv10017180m.g' => 'esa', 'Thhalv10029339m.g' => 'esa', 'TPR.G1699' => 'tpr', 'TPR.G23609' => 'tpr', 'TPR.G3081' => 'tpr', 'TPR.G40397' => 'tpr', 'TPR.G5522' => 'tpr', 'TPR.G5618' => 'tpr', 'TPR.G5626' => 'tpr', 'TWI09G1632' => 'twi', 'TWI23G1230' => 'twi', 'TWI53G1064' => 'twi', 'TWI59G0751' => 'twi', 'TWI74G0947' => 'twi', 'TWI77G0337' => 'twi', 'TWI79G1254' => 'twi', 'unitig_0.g2341' => 'ugi', 'unitig_26.g10006' => 'ugi', 'unitig_26.g10008' => 'ugi', 'unitig_26.g9192' => 'ugi', 'vmacro14547' => 'vma', 'vmacro15333' => 'vma', 'vmacro18743' => 'vma', 'vmacro20166' => 'vma', 'VMungo0331G0523' => 'vmu', 'VMungo0331G1202' => 'vmu', 'VMungo0720G1228' => 'vmu', 'VMungo0720G1514' => 'vmu', 'VMungo1080G0169' => 'vmu', 'VMungo1127G1475' => 'vmu', 'VMungo1383G1208' => 'vmu', 'VMungo1383G1698' => 'vmu', 'Zm00001eb012270' => 'zma', 'Zm00001eb054100' => 'zma', 'Zm00001eb063350' => 'zma', 'Zm00001eb328560' => 'zma', 'Zm00001eb342820' => 'zma', 'Zm00001eb362210' => 'zma', 'Zm00001eb397730' => 'zma', 'Zm00001eb399750' => 'zma' ), 'gf_id' => 'HOM05D000959', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000959' ), 'data_identifier' => 'HOM05D000959', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000959', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '622', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p07100' => 'bna', 'A03p11720' => 'bna', 'A05p08300' => 'bna', 'A05p13380' => 'bna', 'A09p54130' => 'bna', 'A10p16690' => 'bna', 'A10p16700' => 'bna', 'A10p33390' => 'bna', 'Aa31LG10G16020' => 'aar', 'Aa31LG1G11810' => 'aar', 'Aa31LG1G11830' => 'aar', 'Aa31LG1G22510' => 'aar', 'Aa31LG5G4890' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5793' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2310' => 'aag', 'Actinidia08499' => 'ach', 'Actinidia11262' => 'ach', 'Actinidia23926' => 'ach', 'Actinidia34420' => 'ach', 'Actinidia36970' => 'ach', 'Ah.02g111220' => 'amhyb', 'Ah.15g097750' => 'amhyb', 'AL4G27500' => 'aly', 'AL6G11470' => 'aly', 'AL8G35950' => 'aly', 'AL8G35960' => 'aly', 'AL8G35970' => 'aly', 'Aqoxy1G00912' => 'aox', 'Aqoxy2G02253' => 'aox', 'Aqoxy2G02411' => 'aox', 'Aqoxy5G00485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BZ66YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K8ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM4FUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6BF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HFV7XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25JBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0YNNV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MAKK6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P70IT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP2Z6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V61LZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YWP64R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3S9AI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7PGHH' => 'arhy', 'AT2G32150' => 'ath', 'AT3G62040' => 'ath', 'AT5G02230' => 'ath', 'AT5G59480' => 'ath', 'AT5G59490' => 'ath', 'ATR0332G060' => 'atr', 'ATR0559G190' => 'atr', 'ATR0693G294' => 'atr', 'Atru.chr3.3975' => 'acertr', 'Atru.chr3.3976' => 'acertr', 'Atru.chr3.3977' => 'acertr', 'Atru.chr4.2498' => 'acertr', 'Atru.chr5.838' => 'acertr', 'Atru.chr8.1990' => 'acertr', 'Atru.chr8.1991' => 'acertr', 'Atru.chr8.1992' => 'acertr', 'AUR62001759' => 'cqu', 'AUR62009545' => 'cqu', 'AUR62010474' => 'cqu', 'AUR62025820' => 'cqu', 'AUR62030422' => 'cqu', 'AUR62033605' => 'cqu', 'AUR62038615' => 'cqu', 'AUR62041347' => 'cqu', 'BcaB01g04574' => 'bca', 'BcaB02g09263' => 'bca', 'BcaB02g10453' => 'bca', 'BcaB05g22513' => 'bca', 'BcaB08g36253' => 'bca', 'BcaB08g36254' => 'bca', 'BcaC01g06519' => 'bca', 'BcaC02g11889' => 'bca', 'BcaC03g14010' => 'bca', 'BcaC03g18439' => 'bca', 'BcaC04g19765' => 'bca', 'BcaC09g48432' => 'bca', 'BcaNung07302' => 'bca', 'BolC2t06040H' => 'bol', 'BolC2t07346H' => 'bol', 'BolC3t13817H' => 'bol', 'BolC4t22625H' => 'bol', 'BolC4t23297H' => 'bol', 'BolC8t51278H' => 'bol', 'BolC9t58050H' => 'bol', 'BolC9t58051H' => 'bol', 'BolC9t60163H' => 'bol', 'BraA02t04712Z' => 'bra', 'BraA02t05791Z' => 'bra', 'BraA03t10483Z' => 'bra', 'BraA05t19795Z' => 'bra', 'BraA05t20276Z' => 'bra', 'BraA09t40827Z' => 'bra', 'BraA10t43750Z' => 'bra', 'BraA10t43751Z' => 'bra', 'BraA10t45370Z' => 'bra', 'C02p00400' => 'bna', 'C02p12460' => 'bna', 'C03p13680' => 'bna', 'C04p10270' => 'bna', 'C04p17500' => 'bna', 'C08p37010' => 'bna', 'C09p51880' => 'bna', 'C09p51890' => 'bna', 'C09p74300' => 'bna', 'CAN.G179.26' => 'can', 'CAN.G3384.1' => 'can', 'CAN.G394.68' => 'can', 'CAN.G907.13' => 'can', 'CANSAT11G0012' => 'cansat', 'CANSAT25G1586' => 'cansat', 'CANSAT35G0735' => 'cansat', 'CANSAT54G0556' => 'cansat', 'CANSAT64G0356' => 'cansat', 'CANSAT78G2042' => 'cansat', 'CARHR125920' => 'chi', 'CARHR131910' => 'chi', 'CARHR172390' => 'chi', 'CARHR211140' => 'chi', 'CARHR285850' => 'chi', 'CARHR285860' => 'chi', 'Carub.0004s1347' => 'cru', 'Carub.0004s1960' => 'cru', 'Carub.0005s2880' => 'cru', 'Carub.0006s0107' => 'cru', 'Carub.0008s2015' => 'cru', 'Carub.0008s2016' => 'cru', 'Carub.0008s2017' => 'cru', 'Ca_01315_v3' => 'car', 'Ca_05063_v3' => 'car', 'Ca_10231_v3' => 'car', 'Ca_10913_v3' => 'car', 'Ca_19156_v3' => 'car', 'Ca_23644_v3' => 'car', 'Ca_26735_v3' => 'car', 'Cc01_g13130' => 'ccan', 'Cc02_g21690' => 'ccan', 'Cc03_g03600' => 'ccan', 'Cc06_g02510' => 'ccan', 'CDE02G1265' => 'cde', 'CDE05G0415' => 'cde', 'CDE08G1082' => 'cde', 'Cfa005780' => 'cfa', 'Cfa011522' => 'cfa', 'Cfa011523' => 'cfa', 'Cfa015627' => 'cfa', 'Cfa017359' => 'cfa', 'Ciclev10005687m.g' => 'ccl', 'Ciclev10012173m.g' => 'ccl', 'Ciclev10021621m.g' => 'ccl', 'Ciclev10028968m.g' => 'ccl', 'Ciclev10029907m.g' => 'ccl', 'CiPaw.01G164800' => 'cil', 'CiPaw.07G083700' => 'cil', 'CiPaw.07G127000' => 'cil', 'CiPaw.07G136900' => 'cil', 'CiPaw.08G081700' => 'cil', 'CiPaw.09G194600' => 'cil', 'CiPaw.10G146500' => 'cil', 'CiPaw.13G091500' => 'cil', 'CiPaw.13G091600' => 'cil', 'ClCG00G003390' => 'cla', 'ClCG01G007220' => 'cla', 'ClCG03G001370' => 'cla', 'ClCG04G008100' => 'cla', 'ClCG06G006110' => 'cla', 'ClCG06G006130' => 'cla', 'ClCG10G021210' => 'cla', 'COL.COLO4_07648' => 'col', 'COL.COLO4_07650' => 'col', 'COL.COLO4_07651' => 'col', 'COL.COLO4_14780' => 'col', 'COL.COLO4_18546' => 'col', 'COL.COLO4_18547' => 'col', 'COL.COLO4_23103' => 'col', 'COL.COLO4_30419' => 'col', 'COL.COLO4_34232' => 'col', 'Cpa.g.sc169.20' => 'cpa', 'Cpa.g.sc57.45' => 'cpa', 'Cpa.g.sc58.124' => 'cpa', 'Cpa.g.sc58.125' => 'cpa', 'Cpa.g.sc81.118' => 'cpa', 'Cpa.g.sc81.119' => 'cpa', 'Cre12.g524700' => 'cre', 'CsaV3_1G034430' => 'csa', 'CsaV3_1G034440' => 'csa', 'CsaV3_1G034450' => 'csa', 'CsaV3_3G034830' => 'csa', 'CsaV3_4G025090' => 'csa', 'CsaV3_5G018660' => 'csa', 'CsaV3_6G038160' => 'csa', 'CSS0003447' => 'camsi', 'CSS0017840' => 'camsi', 'CSS0019260' => 'camsi', 'CSS0040375' => 'camsi', 'CSS0042533' => 'camsi', 'DCAR_005960' => 'dca', 'DCAR_012104' => 'dca', 'DCAR_012105' => 'dca', 'DCAR_012293' => 'dca', 'DCAR_015632' => 'dca', 'DCAR_024602' => 'dca', 'DCAR_028752' => 'dca', 'Dinv06261' => 'din', 'Dinv13982' => 'din', 'Dinv17029' => 'din', 'Dinv18463' => 'din', 'Dinv33181' => 'din', 'Dinv35585' => 'din', 'Dinv37161' => 'din', 'Dinv42977' => 'din', 'Dinv43122' => 'din', 'Dinv44517' => 'din', 'Duzib093G0256' => 'dzi', 'Duzib106G1254' => 'dzi', 'Duzib128G1789' => 'dzi', 'Duzib133G0633' => 'dzi', 'Duzib138G0510' => 'dzi', 'Duzib150G1084' => 'dzi', 'Duzib168G0488' => 'dzi', 'Duzib168G1523' => 'dzi', 'Duzib170G0133' => 'dzi', 'ECA234G1433' => 'eca', 'ECA236G1432' => 'eca', 'ECA236G2256' => 'eca', 'ECA236G2365' => 'eca', 'ECA236G4830' => 'eca', 'ECA248G1505' => 'eca', 'EL10Ac3g06431' => 'bvu', 'EL10Ac5g12577' => 'bvu', 'EL10Ac6g13533' => 'bvu', 'EL10Ac7g16045' => 'bvu', 'Eucgr.A01281' => 'egr', 'Eucgr.B02326' => 'egr', 'Eucgr.H03532' => 'egr', 'Eucgr.K00553' => 'egr', 'Eucgr.K03116' => 'egr', 'FAN02G3963' => 'fan', 'FAN05G0438' => 'fan', 'FAN09G2434' => 'fan', 'FAN12G3984' => 'fan', 'FAN14G0798' => 'fan', 'FAN17G0652' => 'fan', 'FAN19G1988' => 'fan', 'FAN22G0632' => 'fan', 'FAN23G0387' => 'fan', 'FAN26G1323' => 'fan', 'FAN28G0666' => 'fan', 'FvH4_1g26080' => 'fve', 'FvH4_3g36780' => 'fve', 'FvH4_4g15270' => 'fve', 'FvH4_6g13490' => 'fve', 'Glyma.01G098700' => 'gma', 'Glyma.03G065900' => 'gma', 'Glyma.03G073754' => 'gma', 'Glyma.03G073758' => 'gma', 'Glyma.03G083200' => 'gma', 'Glyma.03G225500' => 'gma', 'Glyma.05G037766' => 'gma', 'Glyma.07G133500' => 'gma', 'Glyma.10G139400' => 'gma', 'Glyma.10G248900' => 'gma', 'Glyma.11G137800' => 'gma', 'Glyma.12G061300' => 'gma', 'Glyma.13G337900' => 'gma', 'Glyma.15G036600' => 'gma', 'Glyma.18G182800' => 'gma', 'Glyma.19G222500' => 'gma', 'Glyma.20G144800' => 'gma', 'Gohir.A01G222000' => 'ghi', 'Gohir.A03G044000' => 'ghi', 'Gohir.A03G044100' => 'ghi', 'Gohir.A04G083100' => 'ghi', 'Gohir.A07G127200' => 'ghi', 'Gohir.A07G132400' => 'ghi', 'Gohir.A08G000700' => 'ghi', 'Gohir.A11G327300' => 'ghi', 'Gohir.D01G211500' => 'ghi', 'Gohir.D03G123400' => 'ghi', 'Gohir.D03G123500' => 'ghi', 'Gohir.D04G121800' => 'ghi', 'Gohir.D07G131500' => 'ghi', 'Gohir.D07G136600' => 'ghi', 'Gohir.D08G011600' => 'ghi', 'Gohir.D11G346200' => 'ghi', 'Gorai.001G142800' => 'gra', 'Gorai.001G148700' => 'gra', 'Gorai.002G257300' => 'gra', 'Gorai.003G130000' => 'gra', 'Gorai.003G130100' => 'gra', 'Gorai.004G005300' => 'gra', 'Gorai.007G376500' => 'gra', 'Gorai.012G104700' => 'gra', 'GSVIVG01017946001' => 'vvi', 'GSVIVG01024928001' => 'vvi', 'GSVIVG01028227001' => 'vvi', 'GSVIVG01034151001' => 'vvi', 'HanXRQChr05g0135031' => 'han', 'HanXRQChr05g0135041' => 'han', 'HanXRQChr05g0140021' => 'han', 'HanXRQChr06g0178981' => 'han', 'HanXRQChr07g0188251' => 'han', 'HanXRQChr08g0235311' => 'han', 'HanXRQChr09g0271011' => 'han', 'HanXRQChr10g0293321' => 'han', 'HanXRQChr13g0388171' => 'han', 'Haze_00916' => 'cav', 'Haze_05063' => 'cav', 'Haze_20814' => 'cav', 'Haze_24128' => 'cav', 'Hma1.2p1_0745F.1_g212010' => 'hma', 'Hma1.2p1_0757F.1_g213260' => 'hma', 'Hma1.2p1_0936F.1_g238840' => 'hma', 'Hma1.2p1_1735F.1_g299890' => 'hma', 'Hma1.2p1_1861F.1_g305685' => 'hma', 'HPP92_003397' => 'vpl', 'HPP92_012597' => 'vpl', 'HPP92_015520' => 'vpl', 'HPP92_015539' => 'vpl', 'HPP92_020373' => 'vpl', 'Hund04938' => 'sun', 'Hund10677' => 'sun', 'Hund11033' => 'sun', 'Hund12155' => 'sun', 'Lalb_Chr01g0022551' => 'lal', 'Lalb_Chr03g0042341' => 'lal', 'Lalb_Chr07g0192931' => 'lal', 'Lalb_Chr12g0209551' => 'lal', 'Lalb_Chr19g0125251' => 'lal', 'Lalb_Chr19g0137891' => 'lal', 'Lalb_Chr21g0304641' => 'lal', 'Lalb_Chr21g0309881' => 'lal', 'Lj1A5T12' => 'lonja', 'Lj1C148G10' => 'lonja', 'Lj2A93T83' => 'lonja', 'Lj3A738G68' => 'lonja', 'Lj3C966T1' => 'lonja', 'Lj3g0018958' => 'lja', 'Lj3g0021831' => 'lja', 'Lj3g0025443' => 'lja', 'Lj4g0026809' => 'lja', 'Lj5g0012558' => 'lja', 'Lj5g0021586' => 'lja', 'Lsat_1_v5_gn_5_156840' => 'lsa', 'Lsat_1_v5_gn_8_73460' => 'lsa', 'Lsat_1_v5_gn_8_73481' => 'lsa', 'Lsat_1_v5_gn_9_31601' => 'lsa', 'Lsat_1_v5_gn_9_77320' => 'lsa', 'Manes.01G171300' => 'mes', 'Manes.01G171400' => 'mes', 'Manes.01G236100' => 'mes', 'Manes.02G130500' => 'mes', 'Manes.02G130600' => 'mes', 'Manes.03G180200' => 'mes', 'Manes.05G007000' => 'mes', 'Manes.08G084400' => 'mes', 'Manes.09G092600' => 'mes', 'Manes.15G027900' => 'mes', 'MBI04_g40948_MAGBIO' => 'mbi', 'MBI14_g12123_MAGBIO' => 'mbi', 'MBI18_g28915_MAGBIO' => 'mbi', 'MCO09G053' => 'mco', 'MCO11G782' => 'mco', 'MCO15G215' => 'mco', 'MD03G1088500' => 'mdo', 'MD03G1088600' => 'mdo', 'MD04G1130800' => 'mdo', 'MD09G1291700' => 'mdo', 'MD11G1097500' => 'mdo', 'MD11G1097600' => 'mdo', 'MD12G1143900' => 'mdo', 'MD13G1191400' => 'mdo', 'MD16G1191500' => 'mdo', 'Medtr1g085570' => 'mtr', 'Medtr1g104610' => 'mtr', 'Medtr2g097520' => 'mtr', 'Medtr4g021800' => 'mtr', 'Medtr4g021825' => 'mtr', 'Medtr4g064270' => 'mtr', 'Medtr4g064380' => 'mtr', 'Medtr7g062150' => 'mtr', 'MELO3C003138.2' => 'cme', 'MELO3C005187.2' => 'cme', 'MELO3C009252.2' => 'cme', 'MELO3C014481.2' => 'cme', 'MELO3C020616.2' => 'cme', 'MELO3C020617.2' => 'cme', 'MELO3C020618.2' => 'cme', 'Migut.G00328' => 'egut', 'Migut.J00320' => 'egut', 'Migut.L01000' => 'egut', 'Migut.L01953' => 'egut', 'MSTRG.10253' => 'ama', 'MSTRG.19077' => 'ama', 'MSTRG.26780' => 'ama', 'MSTRG.4023' => 'ama', 'MSTRG.5655' => 'ama', 'MSTRG.9992' => 'ama', 'Nitab4.5_0000043g0310' => 'nta', 'Nitab4.5_0000463g0080' => 'nta', 'Nitab4.5_0000705g0170' => 'nta', 'Nitab4.5_0001326g0060' => 'nta', 'Nitab4.5_0001628g0030' => 'nta', 'Nitab4.5_0002103g0110' => 'nta', 'Nitab4.5_0002946g0030' => 'nta', 'Nitab4.5_0004639g0030' => 'nta', 'Nn2g11149' => 'nnu', 'Nn2g13389' => 'nnu', 'Nn4g25326' => 'nnu', 'Nn4g26290' => 'nnu', 'Nn5g29865' => 'nnu', 'Oeu004163.1' => 'oeu', 'Oeu006901.1' => 'oeu', 'Oeu010096.1' => 'oeu', 'Oeu024340.1' => 'oeu', 'Oeu048369.1' => 'oeu', 'Os01g0973000' => 'osa', 'Os03g0273800' => 'osa', 'Os03g0701200' => 'osa', 'Os03g0834050' => 'osa', 'Os07g0634400' => 'osa', 'Peaxi162Scf00092g01414' => 'pax', 'Peaxi162Scf00165g00818' => 'pax', 'Peaxi162Scf00309g00516' => 'pax', 'Peaxi162Scf00774g00218' => 'pax', 'PGR004G1824' => 'pgr', 'PGR004G2606' => 'pgr', 'PGR031G2716' => 'pgr', 'PGR102G2460' => 'pgr', 'PGR142G2599' => 'pgr', 'PGSC0003DMG400000843' => 'stu', 'PGSC0003DMG400008829' => 'stu', 'PGSC0003DMG400030418' => 'stu', 'PGSC0003DMG400031834' => 'stu', 'PGSC0003DMG401028300' => 'stu', 'PGSC0003DMG402028300' => 'stu', 'Phvul.001G219300' => 'pvu', 'Phvul.007G056000' => 'pvu', 'Phvul.007G208000' => 'pvu', 'Phvul.008G119500' => 'pvu', 'Phvul.010G011200' => 'pvu', 'Phvul.010G014800' => 'pvu', 'Phvul.011G062900' => 'pvu', 'Phvul.L007043' => 'pvu', 'Potri.001G242300' => 'ptr', 'Potri.002G185300' => 'ptr', 'Potri.006G086900' => 'ptr', 'Potri.008G151700' => 'ptr', 'Potri.009G033500' => 'ptr', 'Potri.010G089300' => 'ptr', 'Potri.014G110800' => 'ptr', 'Pp3c27_8130' => 'ppa', 'Pp3c6_27410' => 'ppa', 'PRCOL_00001659' => 'pco', 'PRCOL_00001927' => 'pco', 'PRCOL_00003649' => 'pco', 'Prupe.1G011600' => 'ppe', 'Prupe.3G000800' => 'ppe', 'Prupe.3G001100' => 'ppe', 'Prupe.6G072700' => 'ppe', 'Prupe.6G072800' => 'ppe', 'Prupe.6G257300' => 'ppe', 'Prupe.8G033000' => 'ppe', 'Psat0s2633g0080' => 'psa', 'Psat0s3396g0080' => 'psa', 'Psat0s3396g0200' => 'psa', 'Psat3g139080' => 'psa', 'Psat5g285080' => 'psa', 'Psat6g157760' => 'psa', 'Psat6g208440' => 'psa', 'Psat7g215320' => 'psa', 'Psat7g215400' => 'psa', 'Psat7g235600' => 'psa', 'Psat7g235760' => 'psa', 'PSO063G4603' => 'pso', 'PSO210G0182' => 'pso', 'PSO210G0196' => 'pso', 'PSO339G0394' => 'pso', 'PSO339G4127' => 'pso', 'PSO513G0064' => 'pso', 'PSO761G0079' => 'pso', 'QL01p031003' => 'qlo', 'QL01p031078' => 'qlo', 'QL06p003004' => 'qlo', 'QL07p048731' => 'qlo', 'QL09p037427' => 'qlo', 'RcHm_v2.0_Chr3g0466361' => 'rch', 'RcHm_v2.0_Chr3g0485571' => 'rch', 'RcHm_v2.0_Chr4g0416551' => 'rch', 'RcHm_v2.0_Chr5g0065831' => 'rch', 'Rhsim01G0230500' => 'rsi', 'Rhsim05G0194000' => 'rsi', 'Rhsim08G0250400' => 'rsi', 'Sabra02G0131000' => 'sbr', 'Sabra06G0066300' => 'sbr', 'Sabra08G0115500' => 'sbr', 'Sabra09G0023900' => 'sbr', 'Sabra10G0054000' => 'sbr', 'Sabra14G0081500' => 'sbr', 'Sabra16G0147100' => 'sbr', 'SalBow2G2957' => 'sbo', 'SalBow4G3320' => 'sbo', 'SalBow8G1894' => 'sbo', 'Sc07g0007950' => 'sci', 'Sc12g0001360' => 'sci', 'Sc13g0004330' => 'sci', 'Sc20g0005010' => 'sci', 'Sed0000361' => 'sed', 'Sed0001706' => 'sed', 'Sed0002422' => 'sed', 'Sed0004029' => 'sed', 'Sed0004602' => 'sed', 'Sed0004943' => 'sed', 'Sed0008646' => 'sed', 'Sed0023313' => 'sed', 'Sed0024843' => 'sed', 'SEGI_00081' => 'sgi', 'SEGI_00947' => 'sgi', 'SEGI_04046' => 'sgi', 'SEGI_06880' => 'sgi', 'SEGI_09736' => 'sgi', 'SEGI_12741' => 'sgi', 'SEGI_14530' => 'sgi', 'SEGI_20705' => 'sgi', 'SEGI_26088' => 'sgi', 'SEGI_28323' => 'sgi', 'SEGI_33343' => 'sgi', 'SGA_v2.0_scaffold126G33775' => 'sas', 'SGA_v2.0_scaffold2G01337' => 'sas', 'SGA_v2.0_scaffold38G15006' => 'sas', 'SGA_v2.0_scaffold39G15264' => 'sas', 'SGA_v2.0_scaffold453G51880' => 'sas', 'SHI12696' => 'shi', 'SMO367G1096' => 'smo', 'Solyc01g068630.3' => 'sly', 'Solyc05g011880.3' => 'sly', 'Solyc06g076300.3' => 'sly', 'Solyc09g010940.4' => 'sly', 'Solyc09g075890.3' => 'sly', 'Sopen01g030560' => 'spe', 'Sopen05g006630' => 'spe', 'Sopen06g032720' => 'spe', 'Sopen09g005660' => 'spe', 'Sopen09g030690' => 'spe', 'Sp4g14540' => 'spa', 'Sp4g20030' => 'spa', 'Sp5g01320' => 'spa', 'Sp6g21170' => 'spa', 'Sp6g21180' => 'spa', 'Sp6g21190' => 'spa', 'Sp6g40220' => 'spa', 'TAR362G0122' => 'tar', 'TAR362G1338' => 'tar', 'TAR369G0590' => 'tar', 'TAR371G0824' => 'tar', 'TAR622G1429' => 'tar', 'TAR623G0734' => 'tar', 'TAR625G0441' => 'tar', 'TAR629G0976' => 'tar', 'TAR633G1195' => 'tar', 'TAR636G2660' => 'tar', 'THA.LOC104799440' => 'tha', 'THA.LOC104800966' => 'tha', 'THA.LOC104806559' => 'tha', 'THA.LOC104810765' => 'tha', 'THA.LOC104816266' => 'tha', 'THA.LOC104817419' => 'tha', 'THA.LOC104827021' => 'tha', 'Thecc.01G327400' => 'tca', 'Thecc.04G229200' => 'tca', 'Thecc.05G037400' => 'tca', 'Thecc.09G318600' => 'tca', 'Thecc.09G318700' => 'tca', 'Thhalv10006238m.g' => 'esa', 'Thhalv10014321m.g' => 'esa', 'Thhalv10014335m.g' => 'esa', 'Thhalv10015826m.g' => 'esa', 'Thhalv10017107m.g' => 'esa', 'Thhalv10017180m.g' => 'esa', 'Thhalv10029339m.g' => 'esa', 'TPR.G1699' => 'tpr', 'TPR.G23609' => 'tpr', 'TPR.G3081' => 'tpr', 'TPR.G40397' => 'tpr', 'TPR.G5522' => 'tpr', 'TPR.G5618' => 'tpr', 'TPR.G5626' => 'tpr', 'TWI09G1632' => 'twi', 'TWI23G1230' => 'twi', 'TWI53G1064' => 'twi', 'TWI59G0751' => 'twi', 'TWI74G0947' => 'twi', 'TWI77G0337' => 'twi', 'TWI79G1254' => 'twi', 'unitig_0.g2341' => 'ugi', 'unitig_26.g10006' => 'ugi', 'unitig_26.g10008' => 'ugi', 'unitig_26.g9192' => 'ugi', 'vmacro14547' => 'vma', 'vmacro15333' => 'vma', 'vmacro18743' => 'vma', 'vmacro20166' => 'vma', 'VMungo0331G0523' => 'vmu', 'VMungo0331G1202' => 'vmu', 'VMungo0720G1228' => 'vmu', 'VMungo0720G1514' => 'vmu', 'VMungo1080G0169' => 'vmu', 'VMungo1127G1475' => 'vmu', 'VMungo1383G1208' => 'vmu', 'VMungo1383G1698' => 'vmu', 'Zm00001eb012270' => 'zma', 'Zm00001eb054100' => 'zma', 'Zm00001eb063350' => 'zma', 'Zm00001eb328560' => 'zma', 'Zm00001eb342820' => 'zma', 'Zm00001eb362210' => 'zma', 'Zm00001eb397730' => 'zma', 'Zm00001eb399750' => 'zma' ) $gf_id = 'HOM05D000959' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000959' ) $data_identifier = 'HOM05D000959' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 5, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 5, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 10, 'mbi' => (int) 3, 'mco' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 2, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 3, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 11, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399750' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000959', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '622', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p07100' => 'bna', 'A03p11720' => 'bna', 'A05p08300' => 'bna', 'A05p13380' => 'bna', 'A09p54130' => 'bna', 'A10p16690' => 'bna', 'A10p16700' => 'bna', 'A10p33390' => 'bna', 'Aa31LG10G16020' => 'aar', 'Aa31LG1G11810' => 'aar', 'Aa31LG1G11830' => 'aar', 'Aa31LG1G22510' => 'aar', 'Aa31LG5G4890' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5793' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2310' => 'aag', 'Actinidia08499' => 'ach', 'Actinidia11262' => 'ach', 'Actinidia23926' => 'ach', 'Actinidia34420' => 'ach', 'Actinidia36970' => 'ach', 'Ah.02g111220' => 'amhyb', 'Ah.15g097750' => 'amhyb', 'AL4G27500' => 'aly', 'AL6G11470' => 'aly', 'AL8G35950' => 'aly', 'AL8G35960' => 'aly', 'AL8G35970' => 'aly', 'Aqoxy1G00912' => 'aox', 'Aqoxy2G02253' => 'aox', 'Aqoxy2G02411' => 'aox', 'Aqoxy5G00485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BZ66YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K8ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM4FUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6BF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HFV7XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25JBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0YNNV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MAKK6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P70IT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP2Z6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V61LZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YWP64R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3S9AI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7PGHH' => 'arhy', 'AT2G32150' => 'ath', 'AT3G62040' => 'ath', 'AT5G02230' => 'ath', 'AT5G59480' => 'ath', 'AT5G59490' => 'ath', 'ATR0332G060' => 'atr', 'ATR0559G190' => 'atr', 'ATR0693G294' => 'atr', 'Atru.chr3.3975' => 'acertr', 'Atru.chr3.3976' => 'acertr', 'Atru.chr3.3977' => 'acertr', 'Atru.chr4.2498' => 'acertr', 'Atru.chr5.838' => 'acertr', 'Atru.chr8.1990' => 'acertr', 'Atru.chr8.1991' => 'acertr', 'Atru.chr8.1992' => 'acertr', 'AUR62001759' => 'cqu', 'AUR62009545' => 'cqu', 'AUR62010474' => 'cqu', 'AUR62025820' => 'cqu', 'AUR62030422' => 'cqu', 'AUR62033605' => 'cqu', 'AUR62038615' => 'cqu', 'AUR62041347' => 'cqu', 'BcaB01g04574' => 'bca', 'BcaB02g09263' => 'bca', 'BcaB02g10453' => 'bca', 'BcaB05g22513' => 'bca', 'BcaB08g36253' => 'bca', 'BcaB08g36254' => 'bca', 'BcaC01g06519' => 'bca', 'BcaC02g11889' => 'bca', 'BcaC03g14010' => 'bca', 'BcaC03g18439' => 'bca', 'BcaC04g19765' => 'bca', 'BcaC09g48432' => 'bca', 'BcaNung07302' => 'bca', 'BolC2t06040H' => 'bol', 'BolC2t07346H' => 'bol', 'BolC3t13817H' => 'bol', 'BolC4t22625H' => 'bol', 'BolC4t23297H' => 'bol', 'BolC8t51278H' => 'bol', 'BolC9t58050H' => 'bol', 'BolC9t58051H' => 'bol', 'BolC9t60163H' => 'bol', 'BraA02t04712Z' => 'bra', 'BraA02t05791Z' => 'bra', 'BraA03t10483Z' => 'bra', 'BraA05t19795Z' => 'bra', 'BraA05t20276Z' => 'bra', 'BraA09t40827Z' => 'bra', 'BraA10t43750Z' => 'bra', 'BraA10t43751Z' => 'bra', 'BraA10t45370Z' => 'bra', 'C02p00400' => 'bna', 'C02p12460' => 'bna', 'C03p13680' => 'bna', 'C04p10270' => 'bna', 'C04p17500' => 'bna', 'C08p37010' => 'bna', 'C09p51880' => 'bna', 'C09p51890' => 'bna', 'C09p74300' => 'bna', 'CAN.G179.26' => 'can', 'CAN.G3384.1' => 'can', 'CAN.G394.68' => 'can', 'CAN.G907.13' => 'can', 'CANSAT11G0012' => 'cansat', 'CANSAT25G1586' => 'cansat', 'CANSAT35G0735' => 'cansat', 'CANSAT54G0556' => 'cansat', 'CANSAT64G0356' => 'cansat', 'CANSAT78G2042' => 'cansat', 'CARHR125920' => 'chi', 'CARHR131910' => 'chi', 'CARHR172390' => 'chi', 'CARHR211140' => 'chi', 'CARHR285850' => 'chi', 'CARHR285860' => 'chi', 'Carub.0004s1347' => 'cru', 'Carub.0004s1960' => 'cru', 'Carub.0005s2880' => 'cru', 'Carub.0006s0107' => 'cru', 'Carub.0008s2015' => 'cru', 'Carub.0008s2016' => 'cru', 'Carub.0008s2017' => 'cru', 'Ca_01315_v3' => 'car', 'Ca_05063_v3' => 'car', 'Ca_10231_v3' => 'car', 'Ca_10913_v3' => 'car', 'Ca_19156_v3' => 'car', 'Ca_23644_v3' => 'car', 'Ca_26735_v3' => 'car', 'Cc01_g13130' => 'ccan', 'Cc02_g21690' => 'ccan', 'Cc03_g03600' => 'ccan', 'Cc06_g02510' => 'ccan', 'CDE02G1265' => 'cde', 'CDE05G0415' => 'cde', 'CDE08G1082' => 'cde', 'Cfa005780' => 'cfa', 'Cfa011522' => 'cfa', 'Cfa011523' => 'cfa', 'Cfa015627' => 'cfa', 'Cfa017359' => 'cfa', 'Ciclev10005687m.g' => 'ccl', 'Ciclev10012173m.g' => 'ccl', 'Ciclev10021621m.g' => 'ccl', 'Ciclev10028968m.g' => 'ccl', 'Ciclev10029907m.g' => 'ccl', 'CiPaw.01G164800' => 'cil', 'CiPaw.07G083700' => 'cil', 'CiPaw.07G127000' => 'cil', 'CiPaw.07G136900' => 'cil', 'CiPaw.08G081700' => 'cil', 'CiPaw.09G194600' => 'cil', 'CiPaw.10G146500' => 'cil', 'CiPaw.13G091500' => 'cil', 'CiPaw.13G091600' => 'cil', 'ClCG00G003390' => 'cla', 'ClCG01G007220' => 'cla', 'ClCG03G001370' => 'cla', 'ClCG04G008100' => 'cla', 'ClCG06G006110' => 'cla', 'ClCG06G006130' => 'cla', 'ClCG10G021210' => 'cla', 'COL.COLO4_07648' => 'col', 'COL.COLO4_07650' => 'col', 'COL.COLO4_07651' => 'col', 'COL.COLO4_14780' => 'col', 'COL.COLO4_18546' => 'col', 'COL.COLO4_18547' => 'col', 'COL.COLO4_23103' => 'col', 'COL.COLO4_30419' => 'col', 'COL.COLO4_34232' => 'col', 'Cpa.g.sc169.20' => 'cpa', 'Cpa.g.sc57.45' => 'cpa', 'Cpa.g.sc58.124' => 'cpa', 'Cpa.g.sc58.125' => 'cpa', 'Cpa.g.sc81.118' => 'cpa', 'Cpa.g.sc81.119' => 'cpa', 'Cre12.g524700' => 'cre', 'CsaV3_1G034430' => 'csa', 'CsaV3_1G034440' => 'csa', 'CsaV3_1G034450' => 'csa', 'CsaV3_3G034830' => 'csa', 'CsaV3_4G025090' => 'csa', 'CsaV3_5G018660' => 'csa', 'CsaV3_6G038160' => 'csa', 'CSS0003447' => 'camsi', 'CSS0017840' => 'camsi', 'CSS0019260' => 'camsi', 'CSS0040375' => 'camsi', 'CSS0042533' => 'camsi', 'DCAR_005960' => 'dca', 'DCAR_012104' => 'dca', 'DCAR_012105' => 'dca', 'DCAR_012293' => 'dca', 'DCAR_015632' => 'dca', 'DCAR_024602' => 'dca', 'DCAR_028752' => 'dca', 'Dinv06261' => 'din', 'Dinv13982' => 'din', 'Dinv17029' => 'din', 'Dinv18463' => 'din', 'Dinv33181' => 'din', 'Dinv35585' => 'din', 'Dinv37161' => 'din', 'Dinv42977' => 'din', 'Dinv43122' => 'din', 'Dinv44517' => 'din', 'Duzib093G0256' => 'dzi', 'Duzib106G1254' => 'dzi', 'Duzib128G1789' => 'dzi', 'Duzib133G0633' => 'dzi', 'Duzib138G0510' => 'dzi', 'Duzib150G1084' => 'dzi', 'Duzib168G0488' => 'dzi', 'Duzib168G1523' => 'dzi', 'Duzib170G0133' => 'dzi', 'ECA234G1433' => 'eca', 'ECA236G1432' => 'eca', 'ECA236G2256' => 'eca', 'ECA236G2365' => 'eca', 'ECA236G4830' => 'eca', 'ECA248G1505' => 'eca', 'EL10Ac3g06431' => 'bvu', 'EL10Ac5g12577' => 'bvu', 'EL10Ac6g13533' => 'bvu', 'EL10Ac7g16045' => 'bvu', 'Eucgr.A01281' => 'egr', 'Eucgr.B02326' => 'egr', 'Eucgr.H03532' => 'egr', 'Eucgr.K00553' => 'egr', 'Eucgr.K03116' => 'egr', 'FAN02G3963' => 'fan', 'FAN05G0438' => 'fan', 'FAN09G2434' => 'fan', 'FAN12G3984' => 'fan', 'FAN14G0798' => 'fan', 'FAN17G0652' => 'fan', 'FAN19G1988' => 'fan', 'FAN22G0632' => 'fan', 'FAN23G0387' => 'fan', 'FAN26G1323' => 'fan', 'FAN28G0666' => 'fan', 'FvH4_1g26080' => 'fve', 'FvH4_3g36780' => 'fve', 'FvH4_4g15270' => 'fve', 'FvH4_6g13490' => 'fve', 'Glyma.01G098700' => 'gma', 'Glyma.03G065900' => 'gma', 'Glyma.03G073754' => 'gma', 'Glyma.03G073758' => 'gma', 'Glyma.03G083200' => 'gma', 'Glyma.03G225500' => 'gma', 'Glyma.05G037766' => 'gma', 'Glyma.07G133500' => 'gma', 'Glyma.10G139400' => 'gma', 'Glyma.10G248900' => 'gma', 'Glyma.11G137800' => 'gma', 'Glyma.12G061300' => 'gma', 'Glyma.13G337900' => 'gma', 'Glyma.15G036600' => 'gma', 'Glyma.18G182800' => 'gma', 'Glyma.19G222500' => 'gma', 'Glyma.20G144800' => 'gma', 'Gohir.A01G222000' => 'ghi', 'Gohir.A03G044000' => 'ghi', 'Gohir.A03G044100' => 'ghi', 'Gohir.A04G083100' => 'ghi', 'Gohir.A07G127200' => 'ghi', 'Gohir.A07G132400' => 'ghi', 'Gohir.A08G000700' => 'ghi', 'Gohir.A11G327300' => 'ghi', 'Gohir.D01G211500' => 'ghi', 'Gohir.D03G123400' => 'ghi', 'Gohir.D03G123500' => 'ghi', 'Gohir.D04G121800' => 'ghi', 'Gohir.D07G131500' => 'ghi', 'Gohir.D07G136600' => 'ghi', 'Gohir.D08G011600' => 'ghi', 'Gohir.D11G346200' => 'ghi', 'Gorai.001G142800' => 'gra', 'Gorai.001G148700' => 'gra', 'Gorai.002G257300' => 'gra', 'Gorai.003G130000' => 'gra', 'Gorai.003G130100' => 'gra', 'Gorai.004G005300' => 'gra', 'Gorai.007G376500' => 'gra', 'Gorai.012G104700' => 'gra', 'GSVIVG01017946001' => 'vvi', 'GSVIVG01024928001' => 'vvi', 'GSVIVG01028227001' => 'vvi', 'GSVIVG01034151001' => 'vvi', 'HanXRQChr05g0135031' => 'han', 'HanXRQChr05g0135041' => 'han', 'HanXRQChr05g0140021' => 'han', 'HanXRQChr06g0178981' => 'han', 'HanXRQChr07g0188251' => 'han', 'HanXRQChr08g0235311' => 'han', 'HanXRQChr09g0271011' => 'han', 'HanXRQChr10g0293321' => 'han', 'HanXRQChr13g0388171' => 'han', 'Haze_00916' => 'cav', 'Haze_05063' => 'cav', 'Haze_20814' => 'cav', 'Haze_24128' => 'cav', 'Hma1.2p1_0745F.1_g212010' => 'hma', 'Hma1.2p1_0757F.1_g213260' => 'hma', 'Hma1.2p1_0936F.1_g238840' => 'hma', 'Hma1.2p1_1735F.1_g299890' => 'hma', 'Hma1.2p1_1861F.1_g305685' => 'hma', 'HPP92_003397' => 'vpl', 'HPP92_012597' => 'vpl', 'HPP92_015520' => 'vpl', 'HPP92_015539' => 'vpl', 'HPP92_020373' => 'vpl', 'Hund04938' => 'sun', 'Hund10677' => 'sun', 'Hund11033' => 'sun', 'Hund12155' => 'sun', 'Lalb_Chr01g0022551' => 'lal', 'Lalb_Chr03g0042341' => 'lal', 'Lalb_Chr07g0192931' => 'lal', 'Lalb_Chr12g0209551' => 'lal', 'Lalb_Chr19g0125251' => 'lal', 'Lalb_Chr19g0137891' => 'lal', 'Lalb_Chr21g0304641' => 'lal', 'Lalb_Chr21g0309881' => 'lal', 'Lj1A5T12' => 'lonja', 'Lj1C148G10' => 'lonja', 'Lj2A93T83' => 'lonja', 'Lj3A738G68' => 'lonja', 'Lj3C966T1' => 'lonja', 'Lj3g0018958' => 'lja', 'Lj3g0021831' => 'lja', 'Lj3g0025443' => 'lja', 'Lj4g0026809' => 'lja', 'Lj5g0012558' => 'lja', 'Lj5g0021586' => 'lja', 'Lsat_1_v5_gn_5_156840' => 'lsa', 'Lsat_1_v5_gn_8_73460' => 'lsa', 'Lsat_1_v5_gn_8_73481' => 'lsa', 'Lsat_1_v5_gn_9_31601' => 'lsa', 'Lsat_1_v5_gn_9_77320' => 'lsa', 'Manes.01G171300' => 'mes', 'Manes.01G171400' => 'mes', 'Manes.01G236100' => 'mes', 'Manes.02G130500' => 'mes', 'Manes.02G130600' => 'mes', 'Manes.03G180200' => 'mes', 'Manes.05G007000' => 'mes', 'Manes.08G084400' => 'mes', 'Manes.09G092600' => 'mes', 'Manes.15G027900' => 'mes', 'MBI04_g40948_MAGBIO' => 'mbi', 'MBI14_g12123_MAGBIO' => 'mbi', 'MBI18_g28915_MAGBIO' => 'mbi', 'MCO09G053' => 'mco', 'MCO11G782' => 'mco', 'MCO15G215' => 'mco', 'MD03G1088500' => 'mdo', 'MD03G1088600' => 'mdo', 'MD04G1130800' => 'mdo', 'MD09G1291700' => 'mdo', 'MD11G1097500' => 'mdo', 'MD11G1097600' => 'mdo', 'MD12G1143900' => 'mdo', 'MD13G1191400' => 'mdo', 'MD16G1191500' => 'mdo', 'Medtr1g085570' => 'mtr', 'Medtr1g104610' => 'mtr', 'Medtr2g097520' => 'mtr', 'Medtr4g021800' => 'mtr', 'Medtr4g021825' => 'mtr', 'Medtr4g064270' => 'mtr', 'Medtr4g064380' => 'mtr', 'Medtr7g062150' => 'mtr', 'MELO3C003138.2' => 'cme', 'MELO3C005187.2' => 'cme', 'MELO3C009252.2' => 'cme', 'MELO3C014481.2' => 'cme', 'MELO3C020616.2' => 'cme', 'MELO3C020617.2' => 'cme', 'MELO3C020618.2' => 'cme', 'Migut.G00328' => 'egut', 'Migut.J00320' => 'egut', 'Migut.L01000' => 'egut', 'Migut.L01953' => 'egut', 'MSTRG.10253' => 'ama', 'MSTRG.19077' => 'ama', 'MSTRG.26780' => 'ama', 'MSTRG.4023' => 'ama', 'MSTRG.5655' => 'ama', 'MSTRG.9992' => 'ama', 'Nitab4.5_0000043g0310' => 'nta', 'Nitab4.5_0000463g0080' => 'nta', 'Nitab4.5_0000705g0170' => 'nta', 'Nitab4.5_0001326g0060' => 'nta', 'Nitab4.5_0001628g0030' => 'nta', 'Nitab4.5_0002103g0110' => 'nta', 'Nitab4.5_0002946g0030' => 'nta', 'Nitab4.5_0004639g0030' => 'nta', 'Nn2g11149' => 'nnu', 'Nn2g13389' => 'nnu', 'Nn4g25326' => 'nnu', 'Nn4g26290' => 'nnu', 'Nn5g29865' => 'nnu', 'Oeu004163.1' => 'oeu', 'Oeu006901.1' => 'oeu', 'Oeu010096.1' => 'oeu', 'Oeu024340.1' => 'oeu', 'Oeu048369.1' => 'oeu', 'Os01g0973000' => 'osa', 'Os03g0273800' => 'osa', 'Os03g0701200' => 'osa', 'Os03g0834050' => 'osa', 'Os07g0634400' => 'osa', 'Peaxi162Scf00092g01414' => 'pax', 'Peaxi162Scf00165g00818' => 'pax', 'Peaxi162Scf00309g00516' => 'pax', 'Peaxi162Scf00774g00218' => 'pax', 'PGR004G1824' => 'pgr', 'PGR004G2606' => 'pgr', 'PGR031G2716' => 'pgr', 'PGR102G2460' => 'pgr', 'PGR142G2599' => 'pgr', 'PGSC0003DMG400000843' => 'stu', 'PGSC0003DMG400008829' => 'stu', 'PGSC0003DMG400030418' => 'stu', 'PGSC0003DMG400031834' => 'stu', 'PGSC0003DMG401028300' => 'stu', 'PGSC0003DMG402028300' => 'stu', 'Phvul.001G219300' => 'pvu', 'Phvul.007G056000' => 'pvu', 'Phvul.007G208000' => 'pvu', 'Phvul.008G119500' => 'pvu', 'Phvul.010G011200' => 'pvu', 'Phvul.010G014800' => 'pvu', 'Phvul.011G062900' => 'pvu', 'Phvul.L007043' => 'pvu', 'Potri.001G242300' => 'ptr', 'Potri.002G185300' => 'ptr', 'Potri.006G086900' => 'ptr', 'Potri.008G151700' => 'ptr', 'Potri.009G033500' => 'ptr', 'Potri.010G089300' => 'ptr', 'Potri.014G110800' => 'ptr', 'Pp3c27_8130' => 'ppa', 'Pp3c6_27410' => 'ppa', 'PRCOL_00001659' => 'pco', 'PRCOL_00001927' => 'pco', 'PRCOL_00003649' => 'pco', 'Prupe.1G011600' => 'ppe', 'Prupe.3G000800' => 'ppe', 'Prupe.3G001100' => 'ppe', 'Prupe.6G072700' => 'ppe', 'Prupe.6G072800' => 'ppe', 'Prupe.6G257300' => 'ppe', 'Prupe.8G033000' => 'ppe', 'Psat0s2633g0080' => 'psa', 'Psat0s3396g0080' => 'psa', 'Psat0s3396g0200' => 'psa', 'Psat3g139080' => 'psa', 'Psat5g285080' => 'psa', 'Psat6g157760' => 'psa', 'Psat6g208440' => 'psa', 'Psat7g215320' => 'psa', 'Psat7g215400' => 'psa', 'Psat7g235600' => 'psa', 'Psat7g235760' => 'psa', 'PSO063G4603' => 'pso', 'PSO210G0182' => 'pso', 'PSO210G0196' => 'pso', 'PSO339G0394' => 'pso', 'PSO339G4127' => 'pso', 'PSO513G0064' => 'pso', 'PSO761G0079' => 'pso', 'QL01p031003' => 'qlo', 'QL01p031078' => 'qlo', 'QL06p003004' => 'qlo', 'QL07p048731' => 'qlo', 'QL09p037427' => 'qlo', 'RcHm_v2.0_Chr3g0466361' => 'rch', 'RcHm_v2.0_Chr3g0485571' => 'rch', 'RcHm_v2.0_Chr4g0416551' => 'rch', 'RcHm_v2.0_Chr5g0065831' => 'rch', 'Rhsim01G0230500' => 'rsi', 'Rhsim05G0194000' => 'rsi', 'Rhsim08G0250400' => 'rsi', 'Sabra02G0131000' => 'sbr', 'Sabra06G0066300' => 'sbr', 'Sabra08G0115500' => 'sbr', 'Sabra09G0023900' => 'sbr', 'Sabra10G0054000' => 'sbr', 'Sabra14G0081500' => 'sbr', 'Sabra16G0147100' => 'sbr', 'SalBow2G2957' => 'sbo', 'SalBow4G3320' => 'sbo', 'SalBow8G1894' => 'sbo', 'Sc07g0007950' => 'sci', 'Sc12g0001360' => 'sci', 'Sc13g0004330' => 'sci', 'Sc20g0005010' => 'sci', 'Sed0000361' => 'sed', 'Sed0001706' => 'sed', 'Sed0002422' => 'sed', 'Sed0004029' => 'sed', 'Sed0004602' => 'sed', 'Sed0004943' => 'sed', 'Sed0008646' => 'sed', 'Sed0023313' => 'sed', 'Sed0024843' => 'sed', 'SEGI_00081' => 'sgi', 'SEGI_00947' => 'sgi', 'SEGI_04046' => 'sgi', 'SEGI_06880' => 'sgi', 'SEGI_09736' => 'sgi', 'SEGI_12741' => 'sgi', 'SEGI_14530' => 'sgi', 'SEGI_20705' => 'sgi', 'SEGI_26088' => 'sgi', 'SEGI_28323' => 'sgi', 'SEGI_33343' => 'sgi', 'SGA_v2.0_scaffold126G33775' => 'sas', 'SGA_v2.0_scaffold2G01337' => 'sas', 'SGA_v2.0_scaffold38G15006' => 'sas', 'SGA_v2.0_scaffold39G15264' => 'sas', 'SGA_v2.0_scaffold453G51880' => 'sas', 'SHI12696' => 'shi', 'SMO367G1096' => 'smo', 'Solyc01g068630.3' => 'sly', 'Solyc05g011880.3' => 'sly', 'Solyc06g076300.3' => 'sly', 'Solyc09g010940.4' => 'sly', 'Solyc09g075890.3' => 'sly', 'Sopen01g030560' => 'spe', 'Sopen05g006630' => 'spe', 'Sopen06g032720' => 'spe', 'Sopen09g005660' => 'spe', 'Sopen09g030690' => 'spe', 'Sp4g14540' => 'spa', 'Sp4g20030' => 'spa', 'Sp5g01320' => 'spa', 'Sp6g21170' => 'spa', 'Sp6g21180' => 'spa', 'Sp6g21190' => 'spa', 'Sp6g40220' => 'spa', 'TAR362G0122' => 'tar', 'TAR362G1338' => 'tar', 'TAR369G0590' => 'tar', 'TAR371G0824' => 'tar', 'TAR622G1429' => 'tar', 'TAR623G0734' => 'tar', 'TAR625G0441' => 'tar', 'TAR629G0976' => 'tar', 'TAR633G1195' => 'tar', 'TAR636G2660' => 'tar', 'THA.LOC104799440' => 'tha', 'THA.LOC104800966' => 'tha', 'THA.LOC104806559' => 'tha', 'THA.LOC104810765' => 'tha', 'THA.LOC104816266' => 'tha', 'THA.LOC104817419' => 'tha', 'THA.LOC104827021' => 'tha', 'Thecc.01G327400' => 'tca', 'Thecc.04G229200' => 'tca', 'Thecc.05G037400' => 'tca', 'Thecc.09G318600' => 'tca', 'Thecc.09G318700' => 'tca', 'Thhalv10006238m.g' => 'esa', 'Thhalv10014321m.g' => 'esa', 'Thhalv10014335m.g' => 'esa', 'Thhalv10015826m.g' => 'esa', 'Thhalv10017107m.g' => 'esa', 'Thhalv10017180m.g' => 'esa', 'Thhalv10029339m.g' => 'esa', 'TPR.G1699' => 'tpr', 'TPR.G23609' => 'tpr', 'TPR.G3081' => 'tpr', 'TPR.G40397' => 'tpr', 'TPR.G5522' => 'tpr', 'TPR.G5618' => 'tpr', 'TPR.G5626' => 'tpr', 'TWI09G1632' => 'twi', 'TWI23G1230' => 'twi', 'TWI53G1064' => 'twi', 'TWI59G0751' => 'twi', 'TWI74G0947' => 'twi', 'TWI77G0337' => 'twi', 'TWI79G1254' => 'twi', 'unitig_0.g2341' => 'ugi', 'unitig_26.g10006' => 'ugi', 'unitig_26.g10008' => 'ugi', 'unitig_26.g9192' => 'ugi', 'vmacro14547' => 'vma', 'vmacro15333' => 'vma', 'vmacro18743' => 'vma', 'vmacro20166' => 'vma', 'VMungo0331G0523' => 'vmu', 'VMungo0331G1202' => 'vmu', 'VMungo0720G1228' => 'vmu', 'VMungo0720G1514' => 'vmu', 'VMungo1080G0169' => 'vmu', 'VMungo1127G1475' => 'vmu', 'VMungo1383G1208' => 'vmu', 'VMungo1383G1698' => 'vmu', 'Zm00001eb012270' => 'zma', 'Zm00001eb054100' => 'zma', 'Zm00001eb063350' => 'zma', 'Zm00001eb328560' => 'zma', 'Zm00001eb342820' => 'zma', 'Zm00001eb362210' => 'zma', 'Zm00001eb397730' => 'zma', 'Zm00001eb399750' => 'zma' ), 'gf_id' => 'HOM05D000959', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000959' ), 'data_identifier' => 'HOM05D000959', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000959', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '622', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p07100' => 'bna', 'A03p11720' => 'bna', 'A05p08300' => 'bna', 'A05p13380' => 'bna', 'A09p54130' => 'bna', 'A10p16690' => 'bna', 'A10p16700' => 'bna', 'A10p33390' => 'bna', 'Aa31LG10G16020' => 'aar', 'Aa31LG1G11810' => 'aar', 'Aa31LG1G11830' => 'aar', 'Aa31LG1G22510' => 'aar', 'Aa31LG5G4890' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5793' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2310' => 'aag', 'Actinidia08499' => 'ach', 'Actinidia11262' => 'ach', 'Actinidia23926' => 'ach', 'Actinidia34420' => 'ach', 'Actinidia36970' => 'ach', 'Ah.02g111220' => 'amhyb', 'Ah.15g097750' => 'amhyb', 'AL4G27500' => 'aly', 'AL6G11470' => 'aly', 'AL8G35950' => 'aly', 'AL8G35960' => 'aly', 'AL8G35970' => 'aly', 'Aqoxy1G00912' => 'aox', 'Aqoxy2G02253' => 'aox', 'Aqoxy2G02411' => 'aox', 'Aqoxy5G00485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BZ66YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K8ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM4FUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6BF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HFV7XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25JBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0YNNV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MAKK6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P70IT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP2Z6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V61LZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YWP64R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3S9AI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7PGHH' => 'arhy', 'AT2G32150' => 'ath', 'AT3G62040' => 'ath', 'AT5G02230' => 'ath', 'AT5G59480' => 'ath', 'AT5G59490' => 'ath', 'ATR0332G060' => 'atr', 'ATR0559G190' => 'atr', 'ATR0693G294' => 'atr', 'Atru.chr3.3975' => 'acertr', 'Atru.chr3.3976' => 'acertr', 'Atru.chr3.3977' => 'acertr', 'Atru.chr4.2498' => 'acertr', 'Atru.chr5.838' => 'acertr', 'Atru.chr8.1990' => 'acertr', 'Atru.chr8.1991' => 'acertr', 'Atru.chr8.1992' => 'acertr', 'AUR62001759' => 'cqu', 'AUR62009545' => 'cqu', 'AUR62010474' => 'cqu', 'AUR62025820' => 'cqu', 'AUR62030422' => 'cqu', 'AUR62033605' => 'cqu', 'AUR62038615' => 'cqu', 'AUR62041347' => 'cqu', 'BcaB01g04574' => 'bca', 'BcaB02g09263' => 'bca', 'BcaB02g10453' => 'bca', 'BcaB05g22513' => 'bca', 'BcaB08g36253' => 'bca', 'BcaB08g36254' => 'bca', 'BcaC01g06519' => 'bca', 'BcaC02g11889' => 'bca', 'BcaC03g14010' => 'bca', 'BcaC03g18439' => 'bca', 'BcaC04g19765' => 'bca', 'BcaC09g48432' => 'bca', 'BcaNung07302' => 'bca', 'BolC2t06040H' => 'bol', 'BolC2t07346H' => 'bol', 'BolC3t13817H' => 'bol', 'BolC4t22625H' => 'bol', 'BolC4t23297H' => 'bol', 'BolC8t51278H' => 'bol', 'BolC9t58050H' => 'bol', 'BolC9t58051H' => 'bol', 'BolC9t60163H' => 'bol', 'BraA02t04712Z' => 'bra', 'BraA02t05791Z' => 'bra', 'BraA03t10483Z' => 'bra', 'BraA05t19795Z' => 'bra', 'BraA05t20276Z' => 'bra', 'BraA09t40827Z' => 'bra', 'BraA10t43750Z' => 'bra', 'BraA10t43751Z' => 'bra', 'BraA10t45370Z' => 'bra', 'C02p00400' => 'bna', 'C02p12460' => 'bna', 'C03p13680' => 'bna', 'C04p10270' => 'bna', 'C04p17500' => 'bna', 'C08p37010' => 'bna', 'C09p51880' => 'bna', 'C09p51890' => 'bna', 'C09p74300' => 'bna', 'CAN.G179.26' => 'can', 'CAN.G3384.1' => 'can', 'CAN.G394.68' => 'can', 'CAN.G907.13' => 'can', 'CANSAT11G0012' => 'cansat', 'CANSAT25G1586' => 'cansat', 'CANSAT35G0735' => 'cansat', 'CANSAT54G0556' => 'cansat', 'CANSAT64G0356' => 'cansat', 'CANSAT78G2042' => 'cansat', 'CARHR125920' => 'chi', 'CARHR131910' => 'chi', 'CARHR172390' => 'chi', 'CARHR211140' => 'chi', 'CARHR285850' => 'chi', 'CARHR285860' => 'chi', 'Carub.0004s1347' => 'cru', 'Carub.0004s1960' => 'cru', 'Carub.0005s2880' => 'cru', 'Carub.0006s0107' => 'cru', 'Carub.0008s2015' => 'cru', 'Carub.0008s2016' => 'cru', 'Carub.0008s2017' => 'cru', 'Ca_01315_v3' => 'car', 'Ca_05063_v3' => 'car', 'Ca_10231_v3' => 'car', 'Ca_10913_v3' => 'car', 'Ca_19156_v3' => 'car', 'Ca_23644_v3' => 'car', 'Ca_26735_v3' => 'car', 'Cc01_g13130' => 'ccan', 'Cc02_g21690' => 'ccan', 'Cc03_g03600' => 'ccan', 'Cc06_g02510' => 'ccan', 'CDE02G1265' => 'cde', 'CDE05G0415' => 'cde', 'CDE08G1082' => 'cde', 'Cfa005780' => 'cfa', 'Cfa011522' => 'cfa', 'Cfa011523' => 'cfa', 'Cfa015627' => 'cfa', 'Cfa017359' => 'cfa', 'Ciclev10005687m.g' => 'ccl', 'Ciclev10012173m.g' => 'ccl', 'Ciclev10021621m.g' => 'ccl', 'Ciclev10028968m.g' => 'ccl', 'Ciclev10029907m.g' => 'ccl', 'CiPaw.01G164800' => 'cil', 'CiPaw.07G083700' => 'cil', 'CiPaw.07G127000' => 'cil', 'CiPaw.07G136900' => 'cil', 'CiPaw.08G081700' => 'cil', 'CiPaw.09G194600' => 'cil', 'CiPaw.10G146500' => 'cil', 'CiPaw.13G091500' => 'cil', 'CiPaw.13G091600' => 'cil', 'ClCG00G003390' => 'cla', 'ClCG01G007220' => 'cla', 'ClCG03G001370' => 'cla', 'ClCG04G008100' => 'cla', 'ClCG06G006110' => 'cla', 'ClCG06G006130' => 'cla', 'ClCG10G021210' => 'cla', 'COL.COLO4_07648' => 'col', 'COL.COLO4_07650' => 'col', 'COL.COLO4_07651' => 'col', 'COL.COLO4_14780' => 'col', 'COL.COLO4_18546' => 'col', 'COL.COLO4_18547' => 'col', 'COL.COLO4_23103' => 'col', 'COL.COLO4_30419' => 'col', 'COL.COLO4_34232' => 'col', 'Cpa.g.sc169.20' => 'cpa', 'Cpa.g.sc57.45' => 'cpa', 'Cpa.g.sc58.124' => 'cpa', 'Cpa.g.sc58.125' => 'cpa', 'Cpa.g.sc81.118' => 'cpa', 'Cpa.g.sc81.119' => 'cpa', 'Cre12.g524700' => 'cre', 'CsaV3_1G034430' => 'csa', 'CsaV3_1G034440' => 'csa', 'CsaV3_1G034450' => 'csa', 'CsaV3_3G034830' => 'csa', 'CsaV3_4G025090' => 'csa', 'CsaV3_5G018660' => 'csa', 'CsaV3_6G038160' => 'csa', 'CSS0003447' => 'camsi', 'CSS0017840' => 'camsi', 'CSS0019260' => 'camsi', 'CSS0040375' => 'camsi', 'CSS0042533' => 'camsi', 'DCAR_005960' => 'dca', 'DCAR_012104' => 'dca', 'DCAR_012105' => 'dca', 'DCAR_012293' => 'dca', 'DCAR_015632' => 'dca', 'DCAR_024602' => 'dca', 'DCAR_028752' => 'dca', 'Dinv06261' => 'din', 'Dinv13982' => 'din', 'Dinv17029' => 'din', 'Dinv18463' => 'din', 'Dinv33181' => 'din', 'Dinv35585' => 'din', 'Dinv37161' => 'din', 'Dinv42977' => 'din', 'Dinv43122' => 'din', 'Dinv44517' => 'din', 'Duzib093G0256' => 'dzi', 'Duzib106G1254' => 'dzi', 'Duzib128G1789' => 'dzi', 'Duzib133G0633' => 'dzi', 'Duzib138G0510' => 'dzi', 'Duzib150G1084' => 'dzi', 'Duzib168G0488' => 'dzi', 'Duzib168G1523' => 'dzi', 'Duzib170G0133' => 'dzi', 'ECA234G1433' => 'eca', 'ECA236G1432' => 'eca', 'ECA236G2256' => 'eca', 'ECA236G2365' => 'eca', 'ECA236G4830' => 'eca', 'ECA248G1505' => 'eca', 'EL10Ac3g06431' => 'bvu', 'EL10Ac5g12577' => 'bvu', 'EL10Ac6g13533' => 'bvu', 'EL10Ac7g16045' => 'bvu', 'Eucgr.A01281' => 'egr', 'Eucgr.B02326' => 'egr', 'Eucgr.H03532' => 'egr', 'Eucgr.K00553' => 'egr', 'Eucgr.K03116' => 'egr', 'FAN02G3963' => 'fan', 'FAN05G0438' => 'fan', 'FAN09G2434' => 'fan', 'FAN12G3984' => 'fan', 'FAN14G0798' => 'fan', 'FAN17G0652' => 'fan', 'FAN19G1988' => 'fan', 'FAN22G0632' => 'fan', 'FAN23G0387' => 'fan', 'FAN26G1323' => 'fan', 'FAN28G0666' => 'fan', 'FvH4_1g26080' => 'fve', 'FvH4_3g36780' => 'fve', 'FvH4_4g15270' => 'fve', 'FvH4_6g13490' => 'fve', 'Glyma.01G098700' => 'gma', 'Glyma.03G065900' => 'gma', 'Glyma.03G073754' => 'gma', 'Glyma.03G073758' => 'gma', 'Glyma.03G083200' => 'gma', 'Glyma.03G225500' => 'gma', 'Glyma.05G037766' => 'gma', 'Glyma.07G133500' => 'gma', 'Glyma.10G139400' => 'gma', 'Glyma.10G248900' => 'gma', 'Glyma.11G137800' => 'gma', 'Glyma.12G061300' => 'gma', 'Glyma.13G337900' => 'gma', 'Glyma.15G036600' => 'gma', 'Glyma.18G182800' => 'gma', 'Glyma.19G222500' => 'gma', 'Glyma.20G144800' => 'gma', 'Gohir.A01G222000' => 'ghi', 'Gohir.A03G044000' => 'ghi', 'Gohir.A03G044100' => 'ghi', 'Gohir.A04G083100' => 'ghi', 'Gohir.A07G127200' => 'ghi', 'Gohir.A07G132400' => 'ghi', 'Gohir.A08G000700' => 'ghi', 'Gohir.A11G327300' => 'ghi', 'Gohir.D01G211500' => 'ghi', 'Gohir.D03G123400' => 'ghi', 'Gohir.D03G123500' => 'ghi', 'Gohir.D04G121800' => 'ghi', 'Gohir.D07G131500' => 'ghi', 'Gohir.D07G136600' => 'ghi', 'Gohir.D08G011600' => 'ghi', 'Gohir.D11G346200' => 'ghi', 'Gorai.001G142800' => 'gra', 'Gorai.001G148700' => 'gra', 'Gorai.002G257300' => 'gra', 'Gorai.003G130000' => 'gra', 'Gorai.003G130100' => 'gra', 'Gorai.004G005300' => 'gra', 'Gorai.007G376500' => 'gra', 'Gorai.012G104700' => 'gra', 'GSVIVG01017946001' => 'vvi', 'GSVIVG01024928001' => 'vvi', 'GSVIVG01028227001' => 'vvi', 'GSVIVG01034151001' => 'vvi', 'HanXRQChr05g0135031' => 'han', 'HanXRQChr05g0135041' => 'han', 'HanXRQChr05g0140021' => 'han', 'HanXRQChr06g0178981' => 'han', 'HanXRQChr07g0188251' => 'han', 'HanXRQChr08g0235311' => 'han', 'HanXRQChr09g0271011' => 'han', 'HanXRQChr10g0293321' => 'han', 'HanXRQChr13g0388171' => 'han', 'Haze_00916' => 'cav', 'Haze_05063' => 'cav', 'Haze_20814' => 'cav', 'Haze_24128' => 'cav', 'Hma1.2p1_0745F.1_g212010' => 'hma', 'Hma1.2p1_0757F.1_g213260' => 'hma', 'Hma1.2p1_0936F.1_g238840' => 'hma', 'Hma1.2p1_1735F.1_g299890' => 'hma', 'Hma1.2p1_1861F.1_g305685' => 'hma', 'HPP92_003397' => 'vpl', 'HPP92_012597' => 'vpl', 'HPP92_015520' => 'vpl', 'HPP92_015539' => 'vpl', 'HPP92_020373' => 'vpl', 'Hund04938' => 'sun', 'Hund10677' => 'sun', 'Hund11033' => 'sun', 'Hund12155' => 'sun', 'Lalb_Chr01g0022551' => 'lal', 'Lalb_Chr03g0042341' => 'lal', 'Lalb_Chr07g0192931' => 'lal', 'Lalb_Chr12g0209551' => 'lal', 'Lalb_Chr19g0125251' => 'lal', 'Lalb_Chr19g0137891' => 'lal', 'Lalb_Chr21g0304641' => 'lal', 'Lalb_Chr21g0309881' => 'lal', 'Lj1A5T12' => 'lonja', 'Lj1C148G10' => 'lonja', 'Lj2A93T83' => 'lonja', 'Lj3A738G68' => 'lonja', 'Lj3C966T1' => 'lonja', 'Lj3g0018958' => 'lja', 'Lj3g0021831' => 'lja', 'Lj3g0025443' => 'lja', 'Lj4g0026809' => 'lja', 'Lj5g0012558' => 'lja', 'Lj5g0021586' => 'lja', 'Lsat_1_v5_gn_5_156840' => 'lsa', 'Lsat_1_v5_gn_8_73460' => 'lsa', 'Lsat_1_v5_gn_8_73481' => 'lsa', 'Lsat_1_v5_gn_9_31601' => 'lsa', 'Lsat_1_v5_gn_9_77320' => 'lsa', 'Manes.01G171300' => 'mes', 'Manes.01G171400' => 'mes', 'Manes.01G236100' => 'mes', 'Manes.02G130500' => 'mes', 'Manes.02G130600' => 'mes', 'Manes.03G180200' => 'mes', 'Manes.05G007000' => 'mes', 'Manes.08G084400' => 'mes', 'Manes.09G092600' => 'mes', 'Manes.15G027900' => 'mes', 'MBI04_g40948_MAGBIO' => 'mbi', 'MBI14_g12123_MAGBIO' => 'mbi', 'MBI18_g28915_MAGBIO' => 'mbi', 'MCO09G053' => 'mco', 'MCO11G782' => 'mco', 'MCO15G215' => 'mco', 'MD03G1088500' => 'mdo', 'MD03G1088600' => 'mdo', 'MD04G1130800' => 'mdo', 'MD09G1291700' => 'mdo', 'MD11G1097500' => 'mdo', 'MD11G1097600' => 'mdo', 'MD12G1143900' => 'mdo', 'MD13G1191400' => 'mdo', 'MD16G1191500' => 'mdo', 'Medtr1g085570' => 'mtr', 'Medtr1g104610' => 'mtr', 'Medtr2g097520' => 'mtr', 'Medtr4g021800' => 'mtr', 'Medtr4g021825' => 'mtr', 'Medtr4g064270' => 'mtr', 'Medtr4g064380' => 'mtr', 'Medtr7g062150' => 'mtr', 'MELO3C003138.2' => 'cme', 'MELO3C005187.2' => 'cme', 'MELO3C009252.2' => 'cme', 'MELO3C014481.2' => 'cme', 'MELO3C020616.2' => 'cme', 'MELO3C020617.2' => 'cme', 'MELO3C020618.2' => 'cme', 'Migut.G00328' => 'egut', 'Migut.J00320' => 'egut', 'Migut.L01000' => 'egut', 'Migut.L01953' => 'egut', 'MSTRG.10253' => 'ama', 'MSTRG.19077' => 'ama', 'MSTRG.26780' => 'ama', 'MSTRG.4023' => 'ama', 'MSTRG.5655' => 'ama', 'MSTRG.9992' => 'ama', 'Nitab4.5_0000043g0310' => 'nta', 'Nitab4.5_0000463g0080' => 'nta', 'Nitab4.5_0000705g0170' => 'nta', 'Nitab4.5_0001326g0060' => 'nta', 'Nitab4.5_0001628g0030' => 'nta', 'Nitab4.5_0002103g0110' => 'nta', 'Nitab4.5_0002946g0030' => 'nta', 'Nitab4.5_0004639g0030' => 'nta', 'Nn2g11149' => 'nnu', 'Nn2g13389' => 'nnu', 'Nn4g25326' => 'nnu', 'Nn4g26290' => 'nnu', 'Nn5g29865' => 'nnu', 'Oeu004163.1' => 'oeu', 'Oeu006901.1' => 'oeu', 'Oeu010096.1' => 'oeu', 'Oeu024340.1' => 'oeu', 'Oeu048369.1' => 'oeu', 'Os01g0973000' => 'osa', 'Os03g0273800' => 'osa', 'Os03g0701200' => 'osa', 'Os03g0834050' => 'osa', 'Os07g0634400' => 'osa', 'Peaxi162Scf00092g01414' => 'pax', 'Peaxi162Scf00165g00818' => 'pax', 'Peaxi162Scf00309g00516' => 'pax', 'Peaxi162Scf00774g00218' => 'pax', 'PGR004G1824' => 'pgr', 'PGR004G2606' => 'pgr', 'PGR031G2716' => 'pgr', 'PGR102G2460' => 'pgr', 'PGR142G2599' => 'pgr', 'PGSC0003DMG400000843' => 'stu', 'PGSC0003DMG400008829' => 'stu', 'PGSC0003DMG400030418' => 'stu', 'PGSC0003DMG400031834' => 'stu', 'PGSC0003DMG401028300' => 'stu', 'PGSC0003DMG402028300' => 'stu', 'Phvul.001G219300' => 'pvu', 'Phvul.007G056000' => 'pvu', 'Phvul.007G208000' => 'pvu', 'Phvul.008G119500' => 'pvu', 'Phvul.010G011200' => 'pvu', 'Phvul.010G014800' => 'pvu', 'Phvul.011G062900' => 'pvu', 'Phvul.L007043' => 'pvu', 'Potri.001G242300' => 'ptr', 'Potri.002G185300' => 'ptr', 'Potri.006G086900' => 'ptr', 'Potri.008G151700' => 'ptr', 'Potri.009G033500' => 'ptr', 'Potri.010G089300' => 'ptr', 'Potri.014G110800' => 'ptr', 'Pp3c27_8130' => 'ppa', 'Pp3c6_27410' => 'ppa', 'PRCOL_00001659' => 'pco', 'PRCOL_00001927' => 'pco', 'PRCOL_00003649' => 'pco', 'Prupe.1G011600' => 'ppe', 'Prupe.3G000800' => 'ppe', 'Prupe.3G001100' => 'ppe', 'Prupe.6G072700' => 'ppe', 'Prupe.6G072800' => 'ppe', 'Prupe.6G257300' => 'ppe', 'Prupe.8G033000' => 'ppe', 'Psat0s2633g0080' => 'psa', 'Psat0s3396g0080' => 'psa', 'Psat0s3396g0200' => 'psa', 'Psat3g139080' => 'psa', 'Psat5g285080' => 'psa', 'Psat6g157760' => 'psa', 'Psat6g208440' => 'psa', 'Psat7g215320' => 'psa', 'Psat7g215400' => 'psa', 'Psat7g235600' => 'psa', 'Psat7g235760' => 'psa', 'PSO063G4603' => 'pso', 'PSO210G0182' => 'pso', 'PSO210G0196' => 'pso', 'PSO339G0394' => 'pso', 'PSO339G4127' => 'pso', 'PSO513G0064' => 'pso', 'PSO761G0079' => 'pso', 'QL01p031003' => 'qlo', 'QL01p031078' => 'qlo', 'QL06p003004' => 'qlo', 'QL07p048731' => 'qlo', 'QL09p037427' => 'qlo', 'RcHm_v2.0_Chr3g0466361' => 'rch', 'RcHm_v2.0_Chr3g0485571' => 'rch', 'RcHm_v2.0_Chr4g0416551' => 'rch', 'RcHm_v2.0_Chr5g0065831' => 'rch', 'Rhsim01G0230500' => 'rsi', 'Rhsim05G0194000' => 'rsi', 'Rhsim08G0250400' => 'rsi', 'Sabra02G0131000' => 'sbr', 'Sabra06G0066300' => 'sbr', 'Sabra08G0115500' => 'sbr', 'Sabra09G0023900' => 'sbr', 'Sabra10G0054000' => 'sbr', 'Sabra14G0081500' => 'sbr', 'Sabra16G0147100' => 'sbr', 'SalBow2G2957' => 'sbo', 'SalBow4G3320' => 'sbo', 'SalBow8G1894' => 'sbo', 'Sc07g0007950' => 'sci', 'Sc12g0001360' => 'sci', 'Sc13g0004330' => 'sci', 'Sc20g0005010' => 'sci', 'Sed0000361' => 'sed', 'Sed0001706' => 'sed', 'Sed0002422' => 'sed', 'Sed0004029' => 'sed', 'Sed0004602' => 'sed', 'Sed0004943' => 'sed', 'Sed0008646' => 'sed', 'Sed0023313' => 'sed', 'Sed0024843' => 'sed', 'SEGI_00081' => 'sgi', 'SEGI_00947' => 'sgi', 'SEGI_04046' => 'sgi', 'SEGI_06880' => 'sgi', 'SEGI_09736' => 'sgi', 'SEGI_12741' => 'sgi', 'SEGI_14530' => 'sgi', 'SEGI_20705' => 'sgi', 'SEGI_26088' => 'sgi', 'SEGI_28323' => 'sgi', 'SEGI_33343' => 'sgi', 'SGA_v2.0_scaffold126G33775' => 'sas', 'SGA_v2.0_scaffold2G01337' => 'sas', 'SGA_v2.0_scaffold38G15006' => 'sas', 'SGA_v2.0_scaffold39G15264' => 'sas', 'SGA_v2.0_scaffold453G51880' => 'sas', 'SHI12696' => 'shi', 'SMO367G1096' => 'smo', 'Solyc01g068630.3' => 'sly', 'Solyc05g011880.3' => 'sly', 'Solyc06g076300.3' => 'sly', 'Solyc09g010940.4' => 'sly', 'Solyc09g075890.3' => 'sly', 'Sopen01g030560' => 'spe', 'Sopen05g006630' => 'spe', 'Sopen06g032720' => 'spe', 'Sopen09g005660' => 'spe', 'Sopen09g030690' => 'spe', 'Sp4g14540' => 'spa', 'Sp4g20030' => 'spa', 'Sp5g01320' => 'spa', 'Sp6g21170' => 'spa', 'Sp6g21180' => 'spa', 'Sp6g21190' => 'spa', 'Sp6g40220' => 'spa', 'TAR362G0122' => 'tar', 'TAR362G1338' => 'tar', 'TAR369G0590' => 'tar', 'TAR371G0824' => 'tar', 'TAR622G1429' => 'tar', 'TAR623G0734' => 'tar', 'TAR625G0441' => 'tar', 'TAR629G0976' => 'tar', 'TAR633G1195' => 'tar', 'TAR636G2660' => 'tar', 'THA.LOC104799440' => 'tha', 'THA.LOC104800966' => 'tha', 'THA.LOC104806559' => 'tha', 'THA.LOC104810765' => 'tha', 'THA.LOC104816266' => 'tha', 'THA.LOC104817419' => 'tha', 'THA.LOC104827021' => 'tha', 'Thecc.01G327400' => 'tca', 'Thecc.04G229200' => 'tca', 'Thecc.05G037400' => 'tca', 'Thecc.09G318600' => 'tca', 'Thecc.09G318700' => 'tca', 'Thhalv10006238m.g' => 'esa', 'Thhalv10014321m.g' => 'esa', 'Thhalv10014335m.g' => 'esa', 'Thhalv10015826m.g' => 'esa', 'Thhalv10017107m.g' => 'esa', 'Thhalv10017180m.g' => 'esa', 'Thhalv10029339m.g' => 'esa', 'TPR.G1699' => 'tpr', 'TPR.G23609' => 'tpr', 'TPR.G3081' => 'tpr', 'TPR.G40397' => 'tpr', 'TPR.G5522' => 'tpr', 'TPR.G5618' => 'tpr', 'TPR.G5626' => 'tpr', 'TWI09G1632' => 'twi', 'TWI23G1230' => 'twi', 'TWI53G1064' => 'twi', 'TWI59G0751' => 'twi', 'TWI74G0947' => 'twi', 'TWI77G0337' => 'twi', 'TWI79G1254' => 'twi', 'unitig_0.g2341' => 'ugi', 'unitig_26.g10006' => 'ugi', 'unitig_26.g10008' => 'ugi', 'unitig_26.g9192' => 'ugi', 'vmacro14547' => 'vma', 'vmacro15333' => 'vma', 'vmacro18743' => 'vma', 'vmacro20166' => 'vma', 'VMungo0331G0523' => 'vmu', 'VMungo0331G1202' => 'vmu', 'VMungo0720G1228' => 'vmu', 'VMungo0720G1514' => 'vmu', 'VMungo1080G0169' => 'vmu', 'VMungo1127G1475' => 'vmu', 'VMungo1383G1208' => 'vmu', 'VMungo1383G1698' => 'vmu', 'Zm00001eb012270' => 'zma', 'Zm00001eb054100' => 'zma', 'Zm00001eb063350' => 'zma', 'Zm00001eb328560' => 'zma', 'Zm00001eb342820' => 'zma', 'Zm00001eb362210' => 'zma', 'Zm00001eb397730' => 'zma', 'Zm00001eb399750' => 'zma' ) $gf_id = 'HOM05D000959' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000959' ) $data_identifier = 'HOM05D000959' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 5, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 5, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 10, 'mbi' => (int) 3, 'mco' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 2, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 3, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 11, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399750' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000959', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '622', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p07100' => 'bna', 'A03p11720' => 'bna', 'A05p08300' => 'bna', 'A05p13380' => 'bna', 'A09p54130' => 'bna', 'A10p16690' => 'bna', 'A10p16700' => 'bna', 'A10p33390' => 'bna', 'Aa31LG10G16020' => 'aar', 'Aa31LG1G11810' => 'aar', 'Aa31LG1G11830' => 'aar', 'Aa31LG1G22510' => 'aar', 'Aa31LG5G4890' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5793' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2310' => 'aag', 'Actinidia08499' => 'ach', 'Actinidia11262' => 'ach', 'Actinidia23926' => 'ach', 'Actinidia34420' => 'ach', 'Actinidia36970' => 'ach', 'Ah.02g111220' => 'amhyb', 'Ah.15g097750' => 'amhyb', 'AL4G27500' => 'aly', 'AL6G11470' => 'aly', 'AL8G35950' => 'aly', 'AL8G35960' => 'aly', 'AL8G35970' => 'aly', 'Aqoxy1G00912' => 'aox', 'Aqoxy2G02253' => 'aox', 'Aqoxy2G02411' => 'aox', 'Aqoxy5G00485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BZ66YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K8ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM4FUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6BF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HFV7XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25JBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0YNNV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MAKK6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P70IT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP2Z6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V61LZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YWP64R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3S9AI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7PGHH' => 'arhy', 'AT2G32150' => 'ath', 'AT3G62040' => 'ath', 'AT5G02230' => 'ath', 'AT5G59480' => 'ath', 'AT5G59490' => 'ath', 'ATR0332G060' => 'atr', 'ATR0559G190' => 'atr', 'ATR0693G294' => 'atr', 'Atru.chr3.3975' => 'acertr', 'Atru.chr3.3976' => 'acertr', 'Atru.chr3.3977' => 'acertr', 'Atru.chr4.2498' => 'acertr', 'Atru.chr5.838' => 'acertr', 'Atru.chr8.1990' => 'acertr', 'Atru.chr8.1991' => 'acertr', 'Atru.chr8.1992' => 'acertr', 'AUR62001759' => 'cqu', 'AUR62009545' => 'cqu', 'AUR62010474' => 'cqu', 'AUR62025820' => 'cqu', 'AUR62030422' => 'cqu', 'AUR62033605' => 'cqu', 'AUR62038615' => 'cqu', 'AUR62041347' => 'cqu', 'BcaB01g04574' => 'bca', 'BcaB02g09263' => 'bca', 'BcaB02g10453' => 'bca', 'BcaB05g22513' => 'bca', 'BcaB08g36253' => 'bca', 'BcaB08g36254' => 'bca', 'BcaC01g06519' => 'bca', 'BcaC02g11889' => 'bca', 'BcaC03g14010' => 'bca', 'BcaC03g18439' => 'bca', 'BcaC04g19765' => 'bca', 'BcaC09g48432' => 'bca', 'BcaNung07302' => 'bca', 'BolC2t06040H' => 'bol', 'BolC2t07346H' => 'bol', 'BolC3t13817H' => 'bol', 'BolC4t22625H' => 'bol', 'BolC4t23297H' => 'bol', 'BolC8t51278H' => 'bol', 'BolC9t58050H' => 'bol', 'BolC9t58051H' => 'bol', 'BolC9t60163H' => 'bol', 'BraA02t04712Z' => 'bra', 'BraA02t05791Z' => 'bra', 'BraA03t10483Z' => 'bra', 'BraA05t19795Z' => 'bra', 'BraA05t20276Z' => 'bra', 'BraA09t40827Z' => 'bra', 'BraA10t43750Z' => 'bra', 'BraA10t43751Z' => 'bra', 'BraA10t45370Z' => 'bra', 'C02p00400' => 'bna', 'C02p12460' => 'bna', 'C03p13680' => 'bna', 'C04p10270' => 'bna', 'C04p17500' => 'bna', 'C08p37010' => 'bna', 'C09p51880' => 'bna', 'C09p51890' => 'bna', 'C09p74300' => 'bna', 'CAN.G179.26' => 'can', 'CAN.G3384.1' => 'can', 'CAN.G394.68' => 'can', 'CAN.G907.13' => 'can', 'CANSAT11G0012' => 'cansat', 'CANSAT25G1586' => 'cansat', 'CANSAT35G0735' => 'cansat', 'CANSAT54G0556' => 'cansat', 'CANSAT64G0356' => 'cansat', 'CANSAT78G2042' => 'cansat', 'CARHR125920' => 'chi', 'CARHR131910' => 'chi', 'CARHR172390' => 'chi', 'CARHR211140' => 'chi', 'CARHR285850' => 'chi', 'CARHR285860' => 'chi', 'Carub.0004s1347' => 'cru', 'Carub.0004s1960' => 'cru', 'Carub.0005s2880' => 'cru', 'Carub.0006s0107' => 'cru', 'Carub.0008s2015' => 'cru', 'Carub.0008s2016' => 'cru', 'Carub.0008s2017' => 'cru', 'Ca_01315_v3' => 'car', 'Ca_05063_v3' => 'car', 'Ca_10231_v3' => 'car', 'Ca_10913_v3' => 'car', 'Ca_19156_v3' => 'car', 'Ca_23644_v3' => 'car', 'Ca_26735_v3' => 'car', 'Cc01_g13130' => 'ccan', 'Cc02_g21690' => 'ccan', 'Cc03_g03600' => 'ccan', 'Cc06_g02510' => 'ccan', 'CDE02G1265' => 'cde', 'CDE05G0415' => 'cde', 'CDE08G1082' => 'cde', 'Cfa005780' => 'cfa', 'Cfa011522' => 'cfa', 'Cfa011523' => 'cfa', 'Cfa015627' => 'cfa', 'Cfa017359' => 'cfa', 'Ciclev10005687m.g' => 'ccl', 'Ciclev10012173m.g' => 'ccl', 'Ciclev10021621m.g' => 'ccl', 'Ciclev10028968m.g' => 'ccl', 'Ciclev10029907m.g' => 'ccl', 'CiPaw.01G164800' => 'cil', 'CiPaw.07G083700' => 'cil', 'CiPaw.07G127000' => 'cil', 'CiPaw.07G136900' => 'cil', 'CiPaw.08G081700' => 'cil', 'CiPaw.09G194600' => 'cil', 'CiPaw.10G146500' => 'cil', 'CiPaw.13G091500' => 'cil', 'CiPaw.13G091600' => 'cil', 'ClCG00G003390' => 'cla', 'ClCG01G007220' => 'cla', 'ClCG03G001370' => 'cla', 'ClCG04G008100' => 'cla', 'ClCG06G006110' => 'cla', 'ClCG06G006130' => 'cla', 'ClCG10G021210' => 'cla', 'COL.COLO4_07648' => 'col', 'COL.COLO4_07650' => 'col', 'COL.COLO4_07651' => 'col', 'COL.COLO4_14780' => 'col', 'COL.COLO4_18546' => 'col', 'COL.COLO4_18547' => 'col', 'COL.COLO4_23103' => 'col', 'COL.COLO4_30419' => 'col', 'COL.COLO4_34232' => 'col', 'Cpa.g.sc169.20' => 'cpa', 'Cpa.g.sc57.45' => 'cpa', 'Cpa.g.sc58.124' => 'cpa', 'Cpa.g.sc58.125' => 'cpa', 'Cpa.g.sc81.118' => 'cpa', 'Cpa.g.sc81.119' => 'cpa', 'Cre12.g524700' => 'cre', 'CsaV3_1G034430' => 'csa', 'CsaV3_1G034440' => 'csa', 'CsaV3_1G034450' => 'csa', 'CsaV3_3G034830' => 'csa', 'CsaV3_4G025090' => 'csa', 'CsaV3_5G018660' => 'csa', 'CsaV3_6G038160' => 'csa', 'CSS0003447' => 'camsi', 'CSS0017840' => 'camsi', 'CSS0019260' => 'camsi', 'CSS0040375' => 'camsi', 'CSS0042533' => 'camsi', 'DCAR_005960' => 'dca', 'DCAR_012104' => 'dca', 'DCAR_012105' => 'dca', 'DCAR_012293' => 'dca', 'DCAR_015632' => 'dca', 'DCAR_024602' => 'dca', 'DCAR_028752' => 'dca', 'Dinv06261' => 'din', 'Dinv13982' => 'din', 'Dinv17029' => 'din', 'Dinv18463' => 'din', 'Dinv33181' => 'din', 'Dinv35585' => 'din', 'Dinv37161' => 'din', 'Dinv42977' => 'din', 'Dinv43122' => 'din', 'Dinv44517' => 'din', 'Duzib093G0256' => 'dzi', 'Duzib106G1254' => 'dzi', 'Duzib128G1789' => 'dzi', 'Duzib133G0633' => 'dzi', 'Duzib138G0510' => 'dzi', 'Duzib150G1084' => 'dzi', 'Duzib168G0488' => 'dzi', 'Duzib168G1523' => 'dzi', 'Duzib170G0133' => 'dzi', 'ECA234G1433' => 'eca', 'ECA236G1432' => 'eca', 'ECA236G2256' => 'eca', 'ECA236G2365' => 'eca', 'ECA236G4830' => 'eca', 'ECA248G1505' => 'eca', 'EL10Ac3g06431' => 'bvu', 'EL10Ac5g12577' => 'bvu', 'EL10Ac6g13533' => 'bvu', 'EL10Ac7g16045' => 'bvu', 'Eucgr.A01281' => 'egr', 'Eucgr.B02326' => 'egr', 'Eucgr.H03532' => 'egr', 'Eucgr.K00553' => 'egr', 'Eucgr.K03116' => 'egr', 'FAN02G3963' => 'fan', 'FAN05G0438' => 'fan', 'FAN09G2434' => 'fan', 'FAN12G3984' => 'fan', 'FAN14G0798' => 'fan', 'FAN17G0652' => 'fan', 'FAN19G1988' => 'fan', 'FAN22G0632' => 'fan', 'FAN23G0387' => 'fan', 'FAN26G1323' => 'fan', 'FAN28G0666' => 'fan', 'FvH4_1g26080' => 'fve', 'FvH4_3g36780' => 'fve', 'FvH4_4g15270' => 'fve', 'FvH4_6g13490' => 'fve', 'Glyma.01G098700' => 'gma', 'Glyma.03G065900' => 'gma', 'Glyma.03G073754' => 'gma', 'Glyma.03G073758' => 'gma', 'Glyma.03G083200' => 'gma', 'Glyma.03G225500' => 'gma', 'Glyma.05G037766' => 'gma', 'Glyma.07G133500' => 'gma', 'Glyma.10G139400' => 'gma', 'Glyma.10G248900' => 'gma', 'Glyma.11G137800' => 'gma', 'Glyma.12G061300' => 'gma', 'Glyma.13G337900' => 'gma', 'Glyma.15G036600' => 'gma', 'Glyma.18G182800' => 'gma', 'Glyma.19G222500' => 'gma', 'Glyma.20G144800' => 'gma', 'Gohir.A01G222000' => 'ghi', 'Gohir.A03G044000' => 'ghi', 'Gohir.A03G044100' => 'ghi', 'Gohir.A04G083100' => 'ghi', 'Gohir.A07G127200' => 'ghi', 'Gohir.A07G132400' => 'ghi', 'Gohir.A08G000700' => 'ghi', 'Gohir.A11G327300' => 'ghi', 'Gohir.D01G211500' => 'ghi', 'Gohir.D03G123400' => 'ghi', 'Gohir.D03G123500' => 'ghi', 'Gohir.D04G121800' => 'ghi', 'Gohir.D07G131500' => 'ghi', 'Gohir.D07G136600' => 'ghi', 'Gohir.D08G011600' => 'ghi', 'Gohir.D11G346200' => 'ghi', 'Gorai.001G142800' => 'gra', 'Gorai.001G148700' => 'gra', 'Gorai.002G257300' => 'gra', 'Gorai.003G130000' => 'gra', 'Gorai.003G130100' => 'gra', 'Gorai.004G005300' => 'gra', 'Gorai.007G376500' => 'gra', 'Gorai.012G104700' => 'gra', 'GSVIVG01017946001' => 'vvi', 'GSVIVG01024928001' => 'vvi', 'GSVIVG01028227001' => 'vvi', 'GSVIVG01034151001' => 'vvi', 'HanXRQChr05g0135031' => 'han', 'HanXRQChr05g0135041' => 'han', 'HanXRQChr05g0140021' => 'han', 'HanXRQChr06g0178981' => 'han', 'HanXRQChr07g0188251' => 'han', 'HanXRQChr08g0235311' => 'han', 'HanXRQChr09g0271011' => 'han', 'HanXRQChr10g0293321' => 'han', 'HanXRQChr13g0388171' => 'han', 'Haze_00916' => 'cav', 'Haze_05063' => 'cav', 'Haze_20814' => 'cav', 'Haze_24128' => 'cav', 'Hma1.2p1_0745F.1_g212010' => 'hma', 'Hma1.2p1_0757F.1_g213260' => 'hma', 'Hma1.2p1_0936F.1_g238840' => 'hma', 'Hma1.2p1_1735F.1_g299890' => 'hma', 'Hma1.2p1_1861F.1_g305685' => 'hma', 'HPP92_003397' => 'vpl', 'HPP92_012597' => 'vpl', 'HPP92_015520' => 'vpl', 'HPP92_015539' => 'vpl', 'HPP92_020373' => 'vpl', 'Hund04938' => 'sun', 'Hund10677' => 'sun', 'Hund11033' => 'sun', 'Hund12155' => 'sun', 'Lalb_Chr01g0022551' => 'lal', 'Lalb_Chr03g0042341' => 'lal', 'Lalb_Chr07g0192931' => 'lal', 'Lalb_Chr12g0209551' => 'lal', 'Lalb_Chr19g0125251' => 'lal', 'Lalb_Chr19g0137891' => 'lal', 'Lalb_Chr21g0304641' => 'lal', 'Lalb_Chr21g0309881' => 'lal', 'Lj1A5T12' => 'lonja', 'Lj1C148G10' => 'lonja', 'Lj2A93T83' => 'lonja', 'Lj3A738G68' => 'lonja', 'Lj3C966T1' => 'lonja', 'Lj3g0018958' => 'lja', 'Lj3g0021831' => 'lja', 'Lj3g0025443' => 'lja', 'Lj4g0026809' => 'lja', 'Lj5g0012558' => 'lja', 'Lj5g0021586' => 'lja', 'Lsat_1_v5_gn_5_156840' => 'lsa', 'Lsat_1_v5_gn_8_73460' => 'lsa', 'Lsat_1_v5_gn_8_73481' => 'lsa', 'Lsat_1_v5_gn_9_31601' => 'lsa', 'Lsat_1_v5_gn_9_77320' => 'lsa', 'Manes.01G171300' => 'mes', 'Manes.01G171400' => 'mes', 'Manes.01G236100' => 'mes', 'Manes.02G130500' => 'mes', 'Manes.02G130600' => 'mes', 'Manes.03G180200' => 'mes', 'Manes.05G007000' => 'mes', 'Manes.08G084400' => 'mes', 'Manes.09G092600' => 'mes', 'Manes.15G027900' => 'mes', 'MBI04_g40948_MAGBIO' => 'mbi', 'MBI14_g12123_MAGBIO' => 'mbi', 'MBI18_g28915_MAGBIO' => 'mbi', 'MCO09G053' => 'mco', 'MCO11G782' => 'mco', 'MCO15G215' => 'mco', 'MD03G1088500' => 'mdo', 'MD03G1088600' => 'mdo', 'MD04G1130800' => 'mdo', 'MD09G1291700' => 'mdo', 'MD11G1097500' => 'mdo', 'MD11G1097600' => 'mdo', 'MD12G1143900' => 'mdo', 'MD13G1191400' => 'mdo', 'MD16G1191500' => 'mdo', 'Medtr1g085570' => 'mtr', 'Medtr1g104610' => 'mtr', 'Medtr2g097520' => 'mtr', 'Medtr4g021800' => 'mtr', 'Medtr4g021825' => 'mtr', 'Medtr4g064270' => 'mtr', 'Medtr4g064380' => 'mtr', 'Medtr7g062150' => 'mtr', 'MELO3C003138.2' => 'cme', 'MELO3C005187.2' => 'cme', 'MELO3C009252.2' => 'cme', 'MELO3C014481.2' => 'cme', 'MELO3C020616.2' => 'cme', 'MELO3C020617.2' => 'cme', 'MELO3C020618.2' => 'cme', 'Migut.G00328' => 'egut', 'Migut.J00320' => 'egut', 'Migut.L01000' => 'egut', 'Migut.L01953' => 'egut', 'MSTRG.10253' => 'ama', 'MSTRG.19077' => 'ama', 'MSTRG.26780' => 'ama', 'MSTRG.4023' => 'ama', 'MSTRG.5655' => 'ama', 'MSTRG.9992' => 'ama', 'Nitab4.5_0000043g0310' => 'nta', 'Nitab4.5_0000463g0080' => 'nta', 'Nitab4.5_0000705g0170' => 'nta', 'Nitab4.5_0001326g0060' => 'nta', 'Nitab4.5_0001628g0030' => 'nta', 'Nitab4.5_0002103g0110' => 'nta', 'Nitab4.5_0002946g0030' => 'nta', 'Nitab4.5_0004639g0030' => 'nta', 'Nn2g11149' => 'nnu', 'Nn2g13389' => 'nnu', 'Nn4g25326' => 'nnu', 'Nn4g26290' => 'nnu', 'Nn5g29865' => 'nnu', 'Oeu004163.1' => 'oeu', 'Oeu006901.1' => 'oeu', 'Oeu010096.1' => 'oeu', 'Oeu024340.1' => 'oeu', 'Oeu048369.1' => 'oeu', 'Os01g0973000' => 'osa', 'Os03g0273800' => 'osa', 'Os03g0701200' => 'osa', 'Os03g0834050' => 'osa', 'Os07g0634400' => 'osa', 'Peaxi162Scf00092g01414' => 'pax', 'Peaxi162Scf00165g00818' => 'pax', 'Peaxi162Scf00309g00516' => 'pax', 'Peaxi162Scf00774g00218' => 'pax', 'PGR004G1824' => 'pgr', 'PGR004G2606' => 'pgr', 'PGR031G2716' => 'pgr', 'PGR102G2460' => 'pgr', 'PGR142G2599' => 'pgr', 'PGSC0003DMG400000843' => 'stu', 'PGSC0003DMG400008829' => 'stu', 'PGSC0003DMG400030418' => 'stu', 'PGSC0003DMG400031834' => 'stu', 'PGSC0003DMG401028300' => 'stu', 'PGSC0003DMG402028300' => 'stu', 'Phvul.001G219300' => 'pvu', 'Phvul.007G056000' => 'pvu', 'Phvul.007G208000' => 'pvu', 'Phvul.008G119500' => 'pvu', 'Phvul.010G011200' => 'pvu', 'Phvul.010G014800' => 'pvu', 'Phvul.011G062900' => 'pvu', 'Phvul.L007043' => 'pvu', 'Potri.001G242300' => 'ptr', 'Potri.002G185300' => 'ptr', 'Potri.006G086900' => 'ptr', 'Potri.008G151700' => 'ptr', 'Potri.009G033500' => 'ptr', 'Potri.010G089300' => 'ptr', 'Potri.014G110800' => 'ptr', 'Pp3c27_8130' => 'ppa', 'Pp3c6_27410' => 'ppa', 'PRCOL_00001659' => 'pco', 'PRCOL_00001927' => 'pco', 'PRCOL_00003649' => 'pco', 'Prupe.1G011600' => 'ppe', 'Prupe.3G000800' => 'ppe', 'Prupe.3G001100' => 'ppe', 'Prupe.6G072700' => 'ppe', 'Prupe.6G072800' => 'ppe', 'Prupe.6G257300' => 'ppe', 'Prupe.8G033000' => 'ppe', 'Psat0s2633g0080' => 'psa', 'Psat0s3396g0080' => 'psa', 'Psat0s3396g0200' => 'psa', 'Psat3g139080' => 'psa', 'Psat5g285080' => 'psa', 'Psat6g157760' => 'psa', 'Psat6g208440' => 'psa', 'Psat7g215320' => 'psa', 'Psat7g215400' => 'psa', 'Psat7g235600' => 'psa', 'Psat7g235760' => 'psa', 'PSO063G4603' => 'pso', 'PSO210G0182' => 'pso', 'PSO210G0196' => 'pso', 'PSO339G0394' => 'pso', 'PSO339G4127' => 'pso', 'PSO513G0064' => 'pso', 'PSO761G0079' => 'pso', 'QL01p031003' => 'qlo', 'QL01p031078' => 'qlo', 'QL06p003004' => 'qlo', 'QL07p048731' => 'qlo', 'QL09p037427' => 'qlo', 'RcHm_v2.0_Chr3g0466361' => 'rch', 'RcHm_v2.0_Chr3g0485571' => 'rch', 'RcHm_v2.0_Chr4g0416551' => 'rch', 'RcHm_v2.0_Chr5g0065831' => 'rch', 'Rhsim01G0230500' => 'rsi', 'Rhsim05G0194000' => 'rsi', 'Rhsim08G0250400' => 'rsi', 'Sabra02G0131000' => 'sbr', 'Sabra06G0066300' => 'sbr', 'Sabra08G0115500' => 'sbr', 'Sabra09G0023900' => 'sbr', 'Sabra10G0054000' => 'sbr', 'Sabra14G0081500' => 'sbr', 'Sabra16G0147100' => 'sbr', 'SalBow2G2957' => 'sbo', 'SalBow4G3320' => 'sbo', 'SalBow8G1894' => 'sbo', 'Sc07g0007950' => 'sci', 'Sc12g0001360' => 'sci', 'Sc13g0004330' => 'sci', 'Sc20g0005010' => 'sci', 'Sed0000361' => 'sed', 'Sed0001706' => 'sed', 'Sed0002422' => 'sed', 'Sed0004029' => 'sed', 'Sed0004602' => 'sed', 'Sed0004943' => 'sed', 'Sed0008646' => 'sed', 'Sed0023313' => 'sed', 'Sed0024843' => 'sed', 'SEGI_00081' => 'sgi', 'SEGI_00947' => 'sgi', 'SEGI_04046' => 'sgi', 'SEGI_06880' => 'sgi', 'SEGI_09736' => 'sgi', 'SEGI_12741' => 'sgi', 'SEGI_14530' => 'sgi', 'SEGI_20705' => 'sgi', 'SEGI_26088' => 'sgi', 'SEGI_28323' => 'sgi', 'SEGI_33343' => 'sgi', 'SGA_v2.0_scaffold126G33775' => 'sas', 'SGA_v2.0_scaffold2G01337' => 'sas', 'SGA_v2.0_scaffold38G15006' => 'sas', 'SGA_v2.0_scaffold39G15264' => 'sas', 'SGA_v2.0_scaffold453G51880' => 'sas', 'SHI12696' => 'shi', 'SMO367G1096' => 'smo', 'Solyc01g068630.3' => 'sly', 'Solyc05g011880.3' => 'sly', 'Solyc06g076300.3' => 'sly', 'Solyc09g010940.4' => 'sly', 'Solyc09g075890.3' => 'sly', 'Sopen01g030560' => 'spe', 'Sopen05g006630' => 'spe', 'Sopen06g032720' => 'spe', 'Sopen09g005660' => 'spe', 'Sopen09g030690' => 'spe', 'Sp4g14540' => 'spa', 'Sp4g20030' => 'spa', 'Sp5g01320' => 'spa', 'Sp6g21170' => 'spa', 'Sp6g21180' => 'spa', 'Sp6g21190' => 'spa', 'Sp6g40220' => 'spa', 'TAR362G0122' => 'tar', 'TAR362G1338' => 'tar', 'TAR369G0590' => 'tar', 'TAR371G0824' => 'tar', 'TAR622G1429' => 'tar', 'TAR623G0734' => 'tar', 'TAR625G0441' => 'tar', 'TAR629G0976' => 'tar', 'TAR633G1195' => 'tar', 'TAR636G2660' => 'tar', 'THA.LOC104799440' => 'tha', 'THA.LOC104800966' => 'tha', 'THA.LOC104806559' => 'tha', 'THA.LOC104810765' => 'tha', 'THA.LOC104816266' => 'tha', 'THA.LOC104817419' => 'tha', 'THA.LOC104827021' => 'tha', 'Thecc.01G327400' => 'tca', 'Thecc.04G229200' => 'tca', 'Thecc.05G037400' => 'tca', 'Thecc.09G318600' => 'tca', 'Thecc.09G318700' => 'tca', 'Thhalv10006238m.g' => 'esa', 'Thhalv10014321m.g' => 'esa', 'Thhalv10014335m.g' => 'esa', 'Thhalv10015826m.g' => 'esa', 'Thhalv10017107m.g' => 'esa', 'Thhalv10017180m.g' => 'esa', 'Thhalv10029339m.g' => 'esa', 'TPR.G1699' => 'tpr', 'TPR.G23609' => 'tpr', 'TPR.G3081' => 'tpr', 'TPR.G40397' => 'tpr', 'TPR.G5522' => 'tpr', 'TPR.G5618' => 'tpr', 'TPR.G5626' => 'tpr', 'TWI09G1632' => 'twi', 'TWI23G1230' => 'twi', 'TWI53G1064' => 'twi', 'TWI59G0751' => 'twi', 'TWI74G0947' => 'twi', 'TWI77G0337' => 'twi', 'TWI79G1254' => 'twi', 'unitig_0.g2341' => 'ugi', 'unitig_26.g10006' => 'ugi', 'unitig_26.g10008' => 'ugi', 'unitig_26.g9192' => 'ugi', 'vmacro14547' => 'vma', 'vmacro15333' => 'vma', 'vmacro18743' => 'vma', 'vmacro20166' => 'vma', 'VMungo0331G0523' => 'vmu', 'VMungo0331G1202' => 'vmu', 'VMungo0720G1228' => 'vmu', 'VMungo0720G1514' => 'vmu', 'VMungo1080G0169' => 'vmu', 'VMungo1127G1475' => 'vmu', 'VMungo1383G1208' => 'vmu', 'VMungo1383G1698' => 'vmu', 'Zm00001eb012270' => 'zma', 'Zm00001eb054100' => 'zma', 'Zm00001eb063350' => 'zma', 'Zm00001eb328560' => 'zma', 'Zm00001eb342820' => 'zma', 'Zm00001eb362210' => 'zma', 'Zm00001eb397730' => 'zma', 'Zm00001eb399750' => 'zma' ), 'gf_id' => 'HOM05D000959', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000959' ), 'data_identifier' => 'HOM05D000959', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000959', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '622', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p07100' => 'bna', 'A03p11720' => 'bna', 'A05p08300' => 'bna', 'A05p13380' => 'bna', 'A09p54130' => 'bna', 'A10p16690' => 'bna', 'A10p16700' => 'bna', 'A10p33390' => 'bna', 'Aa31LG10G16020' => 'aar', 'Aa31LG1G11810' => 'aar', 'Aa31LG1G11830' => 'aar', 'Aa31LG1G22510' => 'aar', 'Aa31LG5G4890' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5793' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2310' => 'aag', 'Actinidia08499' => 'ach', 'Actinidia11262' => 'ach', 'Actinidia23926' => 'ach', 'Actinidia34420' => 'ach', 'Actinidia36970' => 'ach', 'Ah.02g111220' => 'amhyb', 'Ah.15g097750' => 'amhyb', 'AL4G27500' => 'aly', 'AL6G11470' => 'aly', 'AL8G35950' => 'aly', 'AL8G35960' => 'aly', 'AL8G35970' => 'aly', 'Aqoxy1G00912' => 'aox', 'Aqoxy2G02253' => 'aox', 'Aqoxy2G02411' => 'aox', 'Aqoxy5G00485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BZ66YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K8ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM4FUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6BF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HFV7XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25JBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0YNNV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MAKK6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P70IT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP2Z6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V61LZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YWP64R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3S9AI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7PGHH' => 'arhy', 'AT2G32150' => 'ath', 'AT3G62040' => 'ath', 'AT5G02230' => 'ath', 'AT5G59480' => 'ath', 'AT5G59490' => 'ath', 'ATR0332G060' => 'atr', 'ATR0559G190' => 'atr', 'ATR0693G294' => 'atr', 'Atru.chr3.3975' => 'acertr', 'Atru.chr3.3976' => 'acertr', 'Atru.chr3.3977' => 'acertr', 'Atru.chr4.2498' => 'acertr', 'Atru.chr5.838' => 'acertr', 'Atru.chr8.1990' => 'acertr', 'Atru.chr8.1991' => 'acertr', 'Atru.chr8.1992' => 'acertr', 'AUR62001759' => 'cqu', 'AUR62009545' => 'cqu', 'AUR62010474' => 'cqu', 'AUR62025820' => 'cqu', 'AUR62030422' => 'cqu', 'AUR62033605' => 'cqu', 'AUR62038615' => 'cqu', 'AUR62041347' => 'cqu', 'BcaB01g04574' => 'bca', 'BcaB02g09263' => 'bca', 'BcaB02g10453' => 'bca', 'BcaB05g22513' => 'bca', 'BcaB08g36253' => 'bca', 'BcaB08g36254' => 'bca', 'BcaC01g06519' => 'bca', 'BcaC02g11889' => 'bca', 'BcaC03g14010' => 'bca', 'BcaC03g18439' => 'bca', 'BcaC04g19765' => 'bca', 'BcaC09g48432' => 'bca', 'BcaNung07302' => 'bca', 'BolC2t06040H' => 'bol', 'BolC2t07346H' => 'bol', 'BolC3t13817H' => 'bol', 'BolC4t22625H' => 'bol', 'BolC4t23297H' => 'bol', 'BolC8t51278H' => 'bol', 'BolC9t58050H' => 'bol', 'BolC9t58051H' => 'bol', 'BolC9t60163H' => 'bol', 'BraA02t04712Z' => 'bra', 'BraA02t05791Z' => 'bra', 'BraA03t10483Z' => 'bra', 'BraA05t19795Z' => 'bra', 'BraA05t20276Z' => 'bra', 'BraA09t40827Z' => 'bra', 'BraA10t43750Z' => 'bra', 'BraA10t43751Z' => 'bra', 'BraA10t45370Z' => 'bra', 'C02p00400' => 'bna', 'C02p12460' => 'bna', 'C03p13680' => 'bna', 'C04p10270' => 'bna', 'C04p17500' => 'bna', 'C08p37010' => 'bna', 'C09p51880' => 'bna', 'C09p51890' => 'bna', 'C09p74300' => 'bna', 'CAN.G179.26' => 'can', 'CAN.G3384.1' => 'can', 'CAN.G394.68' => 'can', 'CAN.G907.13' => 'can', 'CANSAT11G0012' => 'cansat', 'CANSAT25G1586' => 'cansat', 'CANSAT35G0735' => 'cansat', 'CANSAT54G0556' => 'cansat', 'CANSAT64G0356' => 'cansat', 'CANSAT78G2042' => 'cansat', 'CARHR125920' => 'chi', 'CARHR131910' => 'chi', 'CARHR172390' => 'chi', 'CARHR211140' => 'chi', 'CARHR285850' => 'chi', 'CARHR285860' => 'chi', 'Carub.0004s1347' => 'cru', 'Carub.0004s1960' => 'cru', 'Carub.0005s2880' => 'cru', 'Carub.0006s0107' => 'cru', 'Carub.0008s2015' => 'cru', 'Carub.0008s2016' => 'cru', 'Carub.0008s2017' => 'cru', 'Ca_01315_v3' => 'car', 'Ca_05063_v3' => 'car', 'Ca_10231_v3' => 'car', 'Ca_10913_v3' => 'car', 'Ca_19156_v3' => 'car', 'Ca_23644_v3' => 'car', 'Ca_26735_v3' => 'car', 'Cc01_g13130' => 'ccan', 'Cc02_g21690' => 'ccan', 'Cc03_g03600' => 'ccan', 'Cc06_g02510' => 'ccan', 'CDE02G1265' => 'cde', 'CDE05G0415' => 'cde', 'CDE08G1082' => 'cde', 'Cfa005780' => 'cfa', 'Cfa011522' => 'cfa', 'Cfa011523' => 'cfa', 'Cfa015627' => 'cfa', 'Cfa017359' => 'cfa', 'Ciclev10005687m.g' => 'ccl', 'Ciclev10012173m.g' => 'ccl', 'Ciclev10021621m.g' => 'ccl', 'Ciclev10028968m.g' => 'ccl', 'Ciclev10029907m.g' => 'ccl', 'CiPaw.01G164800' => 'cil', 'CiPaw.07G083700' => 'cil', 'CiPaw.07G127000' => 'cil', 'CiPaw.07G136900' => 'cil', 'CiPaw.08G081700' => 'cil', 'CiPaw.09G194600' => 'cil', 'CiPaw.10G146500' => 'cil', 'CiPaw.13G091500' => 'cil', 'CiPaw.13G091600' => 'cil', 'ClCG00G003390' => 'cla', 'ClCG01G007220' => 'cla', 'ClCG03G001370' => 'cla', 'ClCG04G008100' => 'cla', 'ClCG06G006110' => 'cla', 'ClCG06G006130' => 'cla', 'ClCG10G021210' => 'cla', 'COL.COLO4_07648' => 'col', 'COL.COLO4_07650' => 'col', 'COL.COLO4_07651' => 'col', 'COL.COLO4_14780' => 'col', 'COL.COLO4_18546' => 'col', 'COL.COLO4_18547' => 'col', 'COL.COLO4_23103' => 'col', 'COL.COLO4_30419' => 'col', 'COL.COLO4_34232' => 'col', 'Cpa.g.sc169.20' => 'cpa', 'Cpa.g.sc57.45' => 'cpa', 'Cpa.g.sc58.124' => 'cpa', 'Cpa.g.sc58.125' => 'cpa', 'Cpa.g.sc81.118' => 'cpa', 'Cpa.g.sc81.119' => 'cpa', 'Cre12.g524700' => 'cre', 'CsaV3_1G034430' => 'csa', 'CsaV3_1G034440' => 'csa', 'CsaV3_1G034450' => 'csa', 'CsaV3_3G034830' => 'csa', 'CsaV3_4G025090' => 'csa', 'CsaV3_5G018660' => 'csa', 'CsaV3_6G038160' => 'csa', 'CSS0003447' => 'camsi', 'CSS0017840' => 'camsi', 'CSS0019260' => 'camsi', 'CSS0040375' => 'camsi', 'CSS0042533' => 'camsi', 'DCAR_005960' => 'dca', 'DCAR_012104' => 'dca', 'DCAR_012105' => 'dca', 'DCAR_012293' => 'dca', 'DCAR_015632' => 'dca', 'DCAR_024602' => 'dca', 'DCAR_028752' => 'dca', 'Dinv06261' => 'din', 'Dinv13982' => 'din', 'Dinv17029' => 'din', 'Dinv18463' => 'din', 'Dinv33181' => 'din', 'Dinv35585' => 'din', 'Dinv37161' => 'din', 'Dinv42977' => 'din', 'Dinv43122' => 'din', 'Dinv44517' => 'din', 'Duzib093G0256' => 'dzi', 'Duzib106G1254' => 'dzi', 'Duzib128G1789' => 'dzi', 'Duzib133G0633' => 'dzi', 'Duzib138G0510' => 'dzi', 'Duzib150G1084' => 'dzi', 'Duzib168G0488' => 'dzi', 'Duzib168G1523' => 'dzi', 'Duzib170G0133' => 'dzi', 'ECA234G1433' => 'eca', 'ECA236G1432' => 'eca', 'ECA236G2256' => 'eca', 'ECA236G2365' => 'eca', 'ECA236G4830' => 'eca', 'ECA248G1505' => 'eca', 'EL10Ac3g06431' => 'bvu', 'EL10Ac5g12577' => 'bvu', 'EL10Ac6g13533' => 'bvu', 'EL10Ac7g16045' => 'bvu', 'Eucgr.A01281' => 'egr', 'Eucgr.B02326' => 'egr', 'Eucgr.H03532' => 'egr', 'Eucgr.K00553' => 'egr', 'Eucgr.K03116' => 'egr', 'FAN02G3963' => 'fan', 'FAN05G0438' => 'fan', 'FAN09G2434' => 'fan', 'FAN12G3984' => 'fan', 'FAN14G0798' => 'fan', 'FAN17G0652' => 'fan', 'FAN19G1988' => 'fan', 'FAN22G0632' => 'fan', 'FAN23G0387' => 'fan', 'FAN26G1323' => 'fan', 'FAN28G0666' => 'fan', 'FvH4_1g26080' => 'fve', 'FvH4_3g36780' => 'fve', 'FvH4_4g15270' => 'fve', 'FvH4_6g13490' => 'fve', 'Glyma.01G098700' => 'gma', 'Glyma.03G065900' => 'gma', 'Glyma.03G073754' => 'gma', 'Glyma.03G073758' => 'gma', 'Glyma.03G083200' => 'gma', 'Glyma.03G225500' => 'gma', 'Glyma.05G037766' => 'gma', 'Glyma.07G133500' => 'gma', 'Glyma.10G139400' => 'gma', 'Glyma.10G248900' => 'gma', 'Glyma.11G137800' => 'gma', 'Glyma.12G061300' => 'gma', 'Glyma.13G337900' => 'gma', 'Glyma.15G036600' => 'gma', 'Glyma.18G182800' => 'gma', 'Glyma.19G222500' => 'gma', 'Glyma.20G144800' => 'gma', 'Gohir.A01G222000' => 'ghi', 'Gohir.A03G044000' => 'ghi', 'Gohir.A03G044100' => 'ghi', 'Gohir.A04G083100' => 'ghi', 'Gohir.A07G127200' => 'ghi', 'Gohir.A07G132400' => 'ghi', 'Gohir.A08G000700' => 'ghi', 'Gohir.A11G327300' => 'ghi', 'Gohir.D01G211500' => 'ghi', 'Gohir.D03G123400' => 'ghi', 'Gohir.D03G123500' => 'ghi', 'Gohir.D04G121800' => 'ghi', 'Gohir.D07G131500' => 'ghi', 'Gohir.D07G136600' => 'ghi', 'Gohir.D08G011600' => 'ghi', 'Gohir.D11G346200' => 'ghi', 'Gorai.001G142800' => 'gra', 'Gorai.001G148700' => 'gra', 'Gorai.002G257300' => 'gra', 'Gorai.003G130000' => 'gra', 'Gorai.003G130100' => 'gra', 'Gorai.004G005300' => 'gra', 'Gorai.007G376500' => 'gra', 'Gorai.012G104700' => 'gra', 'GSVIVG01017946001' => 'vvi', 'GSVIVG01024928001' => 'vvi', 'GSVIVG01028227001' => 'vvi', 'GSVIVG01034151001' => 'vvi', 'HanXRQChr05g0135031' => 'han', 'HanXRQChr05g0135041' => 'han', 'HanXRQChr05g0140021' => 'han', 'HanXRQChr06g0178981' => 'han', 'HanXRQChr07g0188251' => 'han', 'HanXRQChr08g0235311' => 'han', 'HanXRQChr09g0271011' => 'han', 'HanXRQChr10g0293321' => 'han', 'HanXRQChr13g0388171' => 'han', 'Haze_00916' => 'cav', 'Haze_05063' => 'cav', 'Haze_20814' => 'cav', 'Haze_24128' => 'cav', 'Hma1.2p1_0745F.1_g212010' => 'hma', 'Hma1.2p1_0757F.1_g213260' => 'hma', 'Hma1.2p1_0936F.1_g238840' => 'hma', 'Hma1.2p1_1735F.1_g299890' => 'hma', 'Hma1.2p1_1861F.1_g305685' => 'hma', 'HPP92_003397' => 'vpl', 'HPP92_012597' => 'vpl', 'HPP92_015520' => 'vpl', 'HPP92_015539' => 'vpl', 'HPP92_020373' => 'vpl', 'Hund04938' => 'sun', 'Hund10677' => 'sun', 'Hund11033' => 'sun', 'Hund12155' => 'sun', 'Lalb_Chr01g0022551' => 'lal', 'Lalb_Chr03g0042341' => 'lal', 'Lalb_Chr07g0192931' => 'lal', 'Lalb_Chr12g0209551' => 'lal', 'Lalb_Chr19g0125251' => 'lal', 'Lalb_Chr19g0137891' => 'lal', 'Lalb_Chr21g0304641' => 'lal', 'Lalb_Chr21g0309881' => 'lal', 'Lj1A5T12' => 'lonja', 'Lj1C148G10' => 'lonja', 'Lj2A93T83' => 'lonja', 'Lj3A738G68' => 'lonja', 'Lj3C966T1' => 'lonja', 'Lj3g0018958' => 'lja', 'Lj3g0021831' => 'lja', 'Lj3g0025443' => 'lja', 'Lj4g0026809' => 'lja', 'Lj5g0012558' => 'lja', 'Lj5g0021586' => 'lja', 'Lsat_1_v5_gn_5_156840' => 'lsa', 'Lsat_1_v5_gn_8_73460' => 'lsa', 'Lsat_1_v5_gn_8_73481' => 'lsa', 'Lsat_1_v5_gn_9_31601' => 'lsa', 'Lsat_1_v5_gn_9_77320' => 'lsa', 'Manes.01G171300' => 'mes', 'Manes.01G171400' => 'mes', 'Manes.01G236100' => 'mes', 'Manes.02G130500' => 'mes', 'Manes.02G130600' => 'mes', 'Manes.03G180200' => 'mes', 'Manes.05G007000' => 'mes', 'Manes.08G084400' => 'mes', 'Manes.09G092600' => 'mes', 'Manes.15G027900' => 'mes', 'MBI04_g40948_MAGBIO' => 'mbi', 'MBI14_g12123_MAGBIO' => 'mbi', 'MBI18_g28915_MAGBIO' => 'mbi', 'MCO09G053' => 'mco', 'MCO11G782' => 'mco', 'MCO15G215' => 'mco', 'MD03G1088500' => 'mdo', 'MD03G1088600' => 'mdo', 'MD04G1130800' => 'mdo', 'MD09G1291700' => 'mdo', 'MD11G1097500' => 'mdo', 'MD11G1097600' => 'mdo', 'MD12G1143900' => 'mdo', 'MD13G1191400' => 'mdo', 'MD16G1191500' => 'mdo', 'Medtr1g085570' => 'mtr', 'Medtr1g104610' => 'mtr', 'Medtr2g097520' => 'mtr', 'Medtr4g021800' => 'mtr', 'Medtr4g021825' => 'mtr', 'Medtr4g064270' => 'mtr', 'Medtr4g064380' => 'mtr', 'Medtr7g062150' => 'mtr', 'MELO3C003138.2' => 'cme', 'MELO3C005187.2' => 'cme', 'MELO3C009252.2' => 'cme', 'MELO3C014481.2' => 'cme', 'MELO3C020616.2' => 'cme', 'MELO3C020617.2' => 'cme', 'MELO3C020618.2' => 'cme', 'Migut.G00328' => 'egut', 'Migut.J00320' => 'egut', 'Migut.L01000' => 'egut', 'Migut.L01953' => 'egut', 'MSTRG.10253' => 'ama', 'MSTRG.19077' => 'ama', 'MSTRG.26780' => 'ama', 'MSTRG.4023' => 'ama', 'MSTRG.5655' => 'ama', 'MSTRG.9992' => 'ama', 'Nitab4.5_0000043g0310' => 'nta', 'Nitab4.5_0000463g0080' => 'nta', 'Nitab4.5_0000705g0170' => 'nta', 'Nitab4.5_0001326g0060' => 'nta', 'Nitab4.5_0001628g0030' => 'nta', 'Nitab4.5_0002103g0110' => 'nta', 'Nitab4.5_0002946g0030' => 'nta', 'Nitab4.5_0004639g0030' => 'nta', 'Nn2g11149' => 'nnu', 'Nn2g13389' => 'nnu', 'Nn4g25326' => 'nnu', 'Nn4g26290' => 'nnu', 'Nn5g29865' => 'nnu', 'Oeu004163.1' => 'oeu', 'Oeu006901.1' => 'oeu', 'Oeu010096.1' => 'oeu', 'Oeu024340.1' => 'oeu', 'Oeu048369.1' => 'oeu', 'Os01g0973000' => 'osa', 'Os03g0273800' => 'osa', 'Os03g0701200' => 'osa', 'Os03g0834050' => 'osa', 'Os07g0634400' => 'osa', 'Peaxi162Scf00092g01414' => 'pax', 'Peaxi162Scf00165g00818' => 'pax', 'Peaxi162Scf00309g00516' => 'pax', 'Peaxi162Scf00774g00218' => 'pax', 'PGR004G1824' => 'pgr', 'PGR004G2606' => 'pgr', 'PGR031G2716' => 'pgr', 'PGR102G2460' => 'pgr', 'PGR142G2599' => 'pgr', 'PGSC0003DMG400000843' => 'stu', 'PGSC0003DMG400008829' => 'stu', 'PGSC0003DMG400030418' => 'stu', 'PGSC0003DMG400031834' => 'stu', 'PGSC0003DMG401028300' => 'stu', 'PGSC0003DMG402028300' => 'stu', 'Phvul.001G219300' => 'pvu', 'Phvul.007G056000' => 'pvu', 'Phvul.007G208000' => 'pvu', 'Phvul.008G119500' => 'pvu', 'Phvul.010G011200' => 'pvu', 'Phvul.010G014800' => 'pvu', 'Phvul.011G062900' => 'pvu', 'Phvul.L007043' => 'pvu', 'Potri.001G242300' => 'ptr', 'Potri.002G185300' => 'ptr', 'Potri.006G086900' => 'ptr', 'Potri.008G151700' => 'ptr', 'Potri.009G033500' => 'ptr', 'Potri.010G089300' => 'ptr', 'Potri.014G110800' => 'ptr', 'Pp3c27_8130' => 'ppa', 'Pp3c6_27410' => 'ppa', 'PRCOL_00001659' => 'pco', 'PRCOL_00001927' => 'pco', 'PRCOL_00003649' => 'pco', 'Prupe.1G011600' => 'ppe', 'Prupe.3G000800' => 'ppe', 'Prupe.3G001100' => 'ppe', 'Prupe.6G072700' => 'ppe', 'Prupe.6G072800' => 'ppe', 'Prupe.6G257300' => 'ppe', 'Prupe.8G033000' => 'ppe', 'Psat0s2633g0080' => 'psa', 'Psat0s3396g0080' => 'psa', 'Psat0s3396g0200' => 'psa', 'Psat3g139080' => 'psa', 'Psat5g285080' => 'psa', 'Psat6g157760' => 'psa', 'Psat6g208440' => 'psa', 'Psat7g215320' => 'psa', 'Psat7g215400' => 'psa', 'Psat7g235600' => 'psa', 'Psat7g235760' => 'psa', 'PSO063G4603' => 'pso', 'PSO210G0182' => 'pso', 'PSO210G0196' => 'pso', 'PSO339G0394' => 'pso', 'PSO339G4127' => 'pso', 'PSO513G0064' => 'pso', 'PSO761G0079' => 'pso', 'QL01p031003' => 'qlo', 'QL01p031078' => 'qlo', 'QL06p003004' => 'qlo', 'QL07p048731' => 'qlo', 'QL09p037427' => 'qlo', 'RcHm_v2.0_Chr3g0466361' => 'rch', 'RcHm_v2.0_Chr3g0485571' => 'rch', 'RcHm_v2.0_Chr4g0416551' => 'rch', 'RcHm_v2.0_Chr5g0065831' => 'rch', 'Rhsim01G0230500' => 'rsi', 'Rhsim05G0194000' => 'rsi', 'Rhsim08G0250400' => 'rsi', 'Sabra02G0131000' => 'sbr', 'Sabra06G0066300' => 'sbr', 'Sabra08G0115500' => 'sbr', 'Sabra09G0023900' => 'sbr', 'Sabra10G0054000' => 'sbr', 'Sabra14G0081500' => 'sbr', 'Sabra16G0147100' => 'sbr', 'SalBow2G2957' => 'sbo', 'SalBow4G3320' => 'sbo', 'SalBow8G1894' => 'sbo', 'Sc07g0007950' => 'sci', 'Sc12g0001360' => 'sci', 'Sc13g0004330' => 'sci', 'Sc20g0005010' => 'sci', 'Sed0000361' => 'sed', 'Sed0001706' => 'sed', 'Sed0002422' => 'sed', 'Sed0004029' => 'sed', 'Sed0004602' => 'sed', 'Sed0004943' => 'sed', 'Sed0008646' => 'sed', 'Sed0023313' => 'sed', 'Sed0024843' => 'sed', 'SEGI_00081' => 'sgi', 'SEGI_00947' => 'sgi', 'SEGI_04046' => 'sgi', 'SEGI_06880' => 'sgi', 'SEGI_09736' => 'sgi', 'SEGI_12741' => 'sgi', 'SEGI_14530' => 'sgi', 'SEGI_20705' => 'sgi', 'SEGI_26088' => 'sgi', 'SEGI_28323' => 'sgi', 'SEGI_33343' => 'sgi', 'SGA_v2.0_scaffold126G33775' => 'sas', 'SGA_v2.0_scaffold2G01337' => 'sas', 'SGA_v2.0_scaffold38G15006' => 'sas', 'SGA_v2.0_scaffold39G15264' => 'sas', 'SGA_v2.0_scaffold453G51880' => 'sas', 'SHI12696' => 'shi', 'SMO367G1096' => 'smo', 'Solyc01g068630.3' => 'sly', 'Solyc05g011880.3' => 'sly', 'Solyc06g076300.3' => 'sly', 'Solyc09g010940.4' => 'sly', 'Solyc09g075890.3' => 'sly', 'Sopen01g030560' => 'spe', 'Sopen05g006630' => 'spe', 'Sopen06g032720' => 'spe', 'Sopen09g005660' => 'spe', 'Sopen09g030690' => 'spe', 'Sp4g14540' => 'spa', 'Sp4g20030' => 'spa', 'Sp5g01320' => 'spa', 'Sp6g21170' => 'spa', 'Sp6g21180' => 'spa', 'Sp6g21190' => 'spa', 'Sp6g40220' => 'spa', 'TAR362G0122' => 'tar', 'TAR362G1338' => 'tar', 'TAR369G0590' => 'tar', 'TAR371G0824' => 'tar', 'TAR622G1429' => 'tar', 'TAR623G0734' => 'tar', 'TAR625G0441' => 'tar', 'TAR629G0976' => 'tar', 'TAR633G1195' => 'tar', 'TAR636G2660' => 'tar', 'THA.LOC104799440' => 'tha', 'THA.LOC104800966' => 'tha', 'THA.LOC104806559' => 'tha', 'THA.LOC104810765' => 'tha', 'THA.LOC104816266' => 'tha', 'THA.LOC104817419' => 'tha', 'THA.LOC104827021' => 'tha', 'Thecc.01G327400' => 'tca', 'Thecc.04G229200' => 'tca', 'Thecc.05G037400' => 'tca', 'Thecc.09G318600' => 'tca', 'Thecc.09G318700' => 'tca', 'Thhalv10006238m.g' => 'esa', 'Thhalv10014321m.g' => 'esa', 'Thhalv10014335m.g' => 'esa', 'Thhalv10015826m.g' => 'esa', 'Thhalv10017107m.g' => 'esa', 'Thhalv10017180m.g' => 'esa', 'Thhalv10029339m.g' => 'esa', 'TPR.G1699' => 'tpr', 'TPR.G23609' => 'tpr', 'TPR.G3081' => 'tpr', 'TPR.G40397' => 'tpr', 'TPR.G5522' => 'tpr', 'TPR.G5618' => 'tpr', 'TPR.G5626' => 'tpr', 'TWI09G1632' => 'twi', 'TWI23G1230' => 'twi', 'TWI53G1064' => 'twi', 'TWI59G0751' => 'twi', 'TWI74G0947' => 'twi', 'TWI77G0337' => 'twi', 'TWI79G1254' => 'twi', 'unitig_0.g2341' => 'ugi', 'unitig_26.g10006' => 'ugi', 'unitig_26.g10008' => 'ugi', 'unitig_26.g9192' => 'ugi', 'vmacro14547' => 'vma', 'vmacro15333' => 'vma', 'vmacro18743' => 'vma', 'vmacro20166' => 'vma', 'VMungo0331G0523' => 'vmu', 'VMungo0331G1202' => 'vmu', 'VMungo0720G1228' => 'vmu', 'VMungo0720G1514' => 'vmu', 'VMungo1080G0169' => 'vmu', 'VMungo1127G1475' => 'vmu', 'VMungo1383G1208' => 'vmu', 'VMungo1383G1698' => 'vmu', 'Zm00001eb012270' => 'zma', 'Zm00001eb054100' => 'zma', 'Zm00001eb063350' => 'zma', 'Zm00001eb328560' => 'zma', 'Zm00001eb342820' => 'zma', 'Zm00001eb362210' => 'zma', 'Zm00001eb397730' => 'zma', 'Zm00001eb399750' => 'zma' ) $gf_id = 'HOM05D000959' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000959' ) $data_identifier = 'HOM05D000959' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 5, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 5, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 10, 'mbi' => (int) 3, 'mco' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 2, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 3, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 11, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399750' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000959', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '622', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p07100' => 'bna', 'A03p11720' => 'bna', 'A05p08300' => 'bna', 'A05p13380' => 'bna', 'A09p54130' => 'bna', 'A10p16690' => 'bna', 'A10p16700' => 'bna', 'A10p33390' => 'bna', 'Aa31LG10G16020' => 'aar', 'Aa31LG1G11810' => 'aar', 'Aa31LG1G11830' => 'aar', 'Aa31LG1G22510' => 'aar', 'Aa31LG5G4890' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5793' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2310' => 'aag', 'Actinidia08499' => 'ach', 'Actinidia11262' => 'ach', 'Actinidia23926' => 'ach', 'Actinidia34420' => 'ach', 'Actinidia36970' => 'ach', 'Ah.02g111220' => 'amhyb', 'Ah.15g097750' => 'amhyb', 'AL4G27500' => 'aly', 'AL6G11470' => 'aly', 'AL8G35950' => 'aly', 'AL8G35960' => 'aly', 'AL8G35970' => 'aly', 'Aqoxy1G00912' => 'aox', 'Aqoxy2G02253' => 'aox', 'Aqoxy2G02411' => 'aox', 'Aqoxy5G00485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BZ66YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K8ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM4FUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6BF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HFV7XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25JBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0YNNV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MAKK6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P70IT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP2Z6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V61LZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YWP64R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3S9AI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7PGHH' => 'arhy', 'AT2G32150' => 'ath', 'AT3G62040' => 'ath', 'AT5G02230' => 'ath', 'AT5G59480' => 'ath', 'AT5G59490' => 'ath', 'ATR0332G060' => 'atr', 'ATR0559G190' => 'atr', 'ATR0693G294' => 'atr', 'Atru.chr3.3975' => 'acertr', 'Atru.chr3.3976' => 'acertr', 'Atru.chr3.3977' => 'acertr', 'Atru.chr4.2498' => 'acertr', 'Atru.chr5.838' => 'acertr', 'Atru.chr8.1990' => 'acertr', 'Atru.chr8.1991' => 'acertr', 'Atru.chr8.1992' => 'acertr', 'AUR62001759' => 'cqu', 'AUR62009545' => 'cqu', 'AUR62010474' => 'cqu', 'AUR62025820' => 'cqu', 'AUR62030422' => 'cqu', 'AUR62033605' => 'cqu', 'AUR62038615' => 'cqu', 'AUR62041347' => 'cqu', 'BcaB01g04574' => 'bca', 'BcaB02g09263' => 'bca', 'BcaB02g10453' => 'bca', 'BcaB05g22513' => 'bca', 'BcaB08g36253' => 'bca', 'BcaB08g36254' => 'bca', 'BcaC01g06519' => 'bca', 'BcaC02g11889' => 'bca', 'BcaC03g14010' => 'bca', 'BcaC03g18439' => 'bca', 'BcaC04g19765' => 'bca', 'BcaC09g48432' => 'bca', 'BcaNung07302' => 'bca', 'BolC2t06040H' => 'bol', 'BolC2t07346H' => 'bol', 'BolC3t13817H' => 'bol', 'BolC4t22625H' => 'bol', 'BolC4t23297H' => 'bol', 'BolC8t51278H' => 'bol', 'BolC9t58050H' => 'bol', 'BolC9t58051H' => 'bol', 'BolC9t60163H' => 'bol', 'BraA02t04712Z' => 'bra', 'BraA02t05791Z' => 'bra', 'BraA03t10483Z' => 'bra', 'BraA05t19795Z' => 'bra', 'BraA05t20276Z' => 'bra', 'BraA09t40827Z' => 'bra', 'BraA10t43750Z' => 'bra', 'BraA10t43751Z' => 'bra', 'BraA10t45370Z' => 'bra', 'C02p00400' => 'bna', 'C02p12460' => 'bna', 'C03p13680' => 'bna', 'C04p10270' => 'bna', 'C04p17500' => 'bna', 'C08p37010' => 'bna', 'C09p51880' => 'bna', 'C09p51890' => 'bna', 'C09p74300' => 'bna', 'CAN.G179.26' => 'can', 'CAN.G3384.1' => 'can', 'CAN.G394.68' => 'can', 'CAN.G907.13' => 'can', 'CANSAT11G0012' => 'cansat', 'CANSAT25G1586' => 'cansat', 'CANSAT35G0735' => 'cansat', 'CANSAT54G0556' => 'cansat', 'CANSAT64G0356' => 'cansat', 'CANSAT78G2042' => 'cansat', 'CARHR125920' => 'chi', 'CARHR131910' => 'chi', 'CARHR172390' => 'chi', 'CARHR211140' => 'chi', 'CARHR285850' => 'chi', 'CARHR285860' => 'chi', 'Carub.0004s1347' => 'cru', 'Carub.0004s1960' => 'cru', 'Carub.0005s2880' => 'cru', 'Carub.0006s0107' => 'cru', 'Carub.0008s2015' => 'cru', 'Carub.0008s2016' => 'cru', 'Carub.0008s2017' => 'cru', 'Ca_01315_v3' => 'car', 'Ca_05063_v3' => 'car', 'Ca_10231_v3' => 'car', 'Ca_10913_v3' => 'car', 'Ca_19156_v3' => 'car', 'Ca_23644_v3' => 'car', 'Ca_26735_v3' => 'car', 'Cc01_g13130' => 'ccan', 'Cc02_g21690' => 'ccan', 'Cc03_g03600' => 'ccan', 'Cc06_g02510' => 'ccan', 'CDE02G1265' => 'cde', 'CDE05G0415' => 'cde', 'CDE08G1082' => 'cde', 'Cfa005780' => 'cfa', 'Cfa011522' => 'cfa', 'Cfa011523' => 'cfa', 'Cfa015627' => 'cfa', 'Cfa017359' => 'cfa', 'Ciclev10005687m.g' => 'ccl', 'Ciclev10012173m.g' => 'ccl', 'Ciclev10021621m.g' => 'ccl', 'Ciclev10028968m.g' => 'ccl', 'Ciclev10029907m.g' => 'ccl', 'CiPaw.01G164800' => 'cil', 'CiPaw.07G083700' => 'cil', 'CiPaw.07G127000' => 'cil', 'CiPaw.07G136900' => 'cil', 'CiPaw.08G081700' => 'cil', 'CiPaw.09G194600' => 'cil', 'CiPaw.10G146500' => 'cil', 'CiPaw.13G091500' => 'cil', 'CiPaw.13G091600' => 'cil', 'ClCG00G003390' => 'cla', 'ClCG01G007220' => 'cla', 'ClCG03G001370' => 'cla', 'ClCG04G008100' => 'cla', 'ClCG06G006110' => 'cla', 'ClCG06G006130' => 'cla', 'ClCG10G021210' => 'cla', 'COL.COLO4_07648' => 'col', 'COL.COLO4_07650' => 'col', 'COL.COLO4_07651' => 'col', 'COL.COLO4_14780' => 'col', 'COL.COLO4_18546' => 'col', 'COL.COLO4_18547' => 'col', 'COL.COLO4_23103' => 'col', 'COL.COLO4_30419' => 'col', 'COL.COLO4_34232' => 'col', 'Cpa.g.sc169.20' => 'cpa', 'Cpa.g.sc57.45' => 'cpa', 'Cpa.g.sc58.124' => 'cpa', 'Cpa.g.sc58.125' => 'cpa', 'Cpa.g.sc81.118' => 'cpa', 'Cpa.g.sc81.119' => 'cpa', 'Cre12.g524700' => 'cre', 'CsaV3_1G034430' => 'csa', 'CsaV3_1G034440' => 'csa', 'CsaV3_1G034450' => 'csa', 'CsaV3_3G034830' => 'csa', 'CsaV3_4G025090' => 'csa', 'CsaV3_5G018660' => 'csa', 'CsaV3_6G038160' => 'csa', 'CSS0003447' => 'camsi', 'CSS0017840' => 'camsi', 'CSS0019260' => 'camsi', 'CSS0040375' => 'camsi', 'CSS0042533' => 'camsi', 'DCAR_005960' => 'dca', 'DCAR_012104' => 'dca', 'DCAR_012105' => 'dca', 'DCAR_012293' => 'dca', 'DCAR_015632' => 'dca', 'DCAR_024602' => 'dca', 'DCAR_028752' => 'dca', 'Dinv06261' => 'din', 'Dinv13982' => 'din', 'Dinv17029' => 'din', 'Dinv18463' => 'din', 'Dinv33181' => 'din', 'Dinv35585' => 'din', 'Dinv37161' => 'din', 'Dinv42977' => 'din', 'Dinv43122' => 'din', 'Dinv44517' => 'din', 'Duzib093G0256' => 'dzi', 'Duzib106G1254' => 'dzi', 'Duzib128G1789' => 'dzi', 'Duzib133G0633' => 'dzi', 'Duzib138G0510' => 'dzi', 'Duzib150G1084' => 'dzi', 'Duzib168G0488' => 'dzi', 'Duzib168G1523' => 'dzi', 'Duzib170G0133' => 'dzi', 'ECA234G1433' => 'eca', 'ECA236G1432' => 'eca', 'ECA236G2256' => 'eca', 'ECA236G2365' => 'eca', 'ECA236G4830' => 'eca', 'ECA248G1505' => 'eca', 'EL10Ac3g06431' => 'bvu', 'EL10Ac5g12577' => 'bvu', 'EL10Ac6g13533' => 'bvu', 'EL10Ac7g16045' => 'bvu', 'Eucgr.A01281' => 'egr', 'Eucgr.B02326' => 'egr', 'Eucgr.H03532' => 'egr', 'Eucgr.K00553' => 'egr', 'Eucgr.K03116' => 'egr', 'FAN02G3963' => 'fan', 'FAN05G0438' => 'fan', 'FAN09G2434' => 'fan', 'FAN12G3984' => 'fan', 'FAN14G0798' => 'fan', 'FAN17G0652' => 'fan', 'FAN19G1988' => 'fan', 'FAN22G0632' => 'fan', 'FAN23G0387' => 'fan', 'FAN26G1323' => 'fan', 'FAN28G0666' => 'fan', 'FvH4_1g26080' => 'fve', 'FvH4_3g36780' => 'fve', 'FvH4_4g15270' => 'fve', 'FvH4_6g13490' => 'fve', 'Glyma.01G098700' => 'gma', 'Glyma.03G065900' => 'gma', 'Glyma.03G073754' => 'gma', 'Glyma.03G073758' => 'gma', 'Glyma.03G083200' => 'gma', 'Glyma.03G225500' => 'gma', 'Glyma.05G037766' => 'gma', 'Glyma.07G133500' => 'gma', 'Glyma.10G139400' => 'gma', 'Glyma.10G248900' => 'gma', 'Glyma.11G137800' => 'gma', 'Glyma.12G061300' => 'gma', 'Glyma.13G337900' => 'gma', 'Glyma.15G036600' => 'gma', 'Glyma.18G182800' => 'gma', 'Glyma.19G222500' => 'gma', 'Glyma.20G144800' => 'gma', 'Gohir.A01G222000' => 'ghi', 'Gohir.A03G044000' => 'ghi', 'Gohir.A03G044100' => 'ghi', 'Gohir.A04G083100' => 'ghi', 'Gohir.A07G127200' => 'ghi', 'Gohir.A07G132400' => 'ghi', 'Gohir.A08G000700' => 'ghi', 'Gohir.A11G327300' => 'ghi', 'Gohir.D01G211500' => 'ghi', 'Gohir.D03G123400' => 'ghi', 'Gohir.D03G123500' => 'ghi', 'Gohir.D04G121800' => 'ghi', 'Gohir.D07G131500' => 'ghi', 'Gohir.D07G136600' => 'ghi', 'Gohir.D08G011600' => 'ghi', 'Gohir.D11G346200' => 'ghi', 'Gorai.001G142800' => 'gra', 'Gorai.001G148700' => 'gra', 'Gorai.002G257300' => 'gra', 'Gorai.003G130000' => 'gra', 'Gorai.003G130100' => 'gra', 'Gorai.004G005300' => 'gra', 'Gorai.007G376500' => 'gra', 'Gorai.012G104700' => 'gra', 'GSVIVG01017946001' => 'vvi', 'GSVIVG01024928001' => 'vvi', 'GSVIVG01028227001' => 'vvi', 'GSVIVG01034151001' => 'vvi', 'HanXRQChr05g0135031' => 'han', 'HanXRQChr05g0135041' => 'han', 'HanXRQChr05g0140021' => 'han', 'HanXRQChr06g0178981' => 'han', 'HanXRQChr07g0188251' => 'han', 'HanXRQChr08g0235311' => 'han', 'HanXRQChr09g0271011' => 'han', 'HanXRQChr10g0293321' => 'han', 'HanXRQChr13g0388171' => 'han', 'Haze_00916' => 'cav', 'Haze_05063' => 'cav', 'Haze_20814' => 'cav', 'Haze_24128' => 'cav', 'Hma1.2p1_0745F.1_g212010' => 'hma', 'Hma1.2p1_0757F.1_g213260' => 'hma', 'Hma1.2p1_0936F.1_g238840' => 'hma', 'Hma1.2p1_1735F.1_g299890' => 'hma', 'Hma1.2p1_1861F.1_g305685' => 'hma', 'HPP92_003397' => 'vpl', 'HPP92_012597' => 'vpl', 'HPP92_015520' => 'vpl', 'HPP92_015539' => 'vpl', 'HPP92_020373' => 'vpl', 'Hund04938' => 'sun', 'Hund10677' => 'sun', 'Hund11033' => 'sun', 'Hund12155' => 'sun', 'Lalb_Chr01g0022551' => 'lal', 'Lalb_Chr03g0042341' => 'lal', 'Lalb_Chr07g0192931' => 'lal', 'Lalb_Chr12g0209551' => 'lal', 'Lalb_Chr19g0125251' => 'lal', 'Lalb_Chr19g0137891' => 'lal', 'Lalb_Chr21g0304641' => 'lal', 'Lalb_Chr21g0309881' => 'lal', 'Lj1A5T12' => 'lonja', 'Lj1C148G10' => 'lonja', 'Lj2A93T83' => 'lonja', 'Lj3A738G68' => 'lonja', 'Lj3C966T1' => 'lonja', 'Lj3g0018958' => 'lja', 'Lj3g0021831' => 'lja', 'Lj3g0025443' => 'lja', 'Lj4g0026809' => 'lja', 'Lj5g0012558' => 'lja', 'Lj5g0021586' => 'lja', 'Lsat_1_v5_gn_5_156840' => 'lsa', 'Lsat_1_v5_gn_8_73460' => 'lsa', 'Lsat_1_v5_gn_8_73481' => 'lsa', 'Lsat_1_v5_gn_9_31601' => 'lsa', 'Lsat_1_v5_gn_9_77320' => 'lsa', 'Manes.01G171300' => 'mes', 'Manes.01G171400' => 'mes', 'Manes.01G236100' => 'mes', 'Manes.02G130500' => 'mes', 'Manes.02G130600' => 'mes', 'Manes.03G180200' => 'mes', 'Manes.05G007000' => 'mes', 'Manes.08G084400' => 'mes', 'Manes.09G092600' => 'mes', 'Manes.15G027900' => 'mes', 'MBI04_g40948_MAGBIO' => 'mbi', 'MBI14_g12123_MAGBIO' => 'mbi', 'MBI18_g28915_MAGBIO' => 'mbi', 'MCO09G053' => 'mco', 'MCO11G782' => 'mco', 'MCO15G215' => 'mco', 'MD03G1088500' => 'mdo', 'MD03G1088600' => 'mdo', 'MD04G1130800' => 'mdo', 'MD09G1291700' => 'mdo', 'MD11G1097500' => 'mdo', 'MD11G1097600' => 'mdo', 'MD12G1143900' => 'mdo', 'MD13G1191400' => 'mdo', 'MD16G1191500' => 'mdo', 'Medtr1g085570' => 'mtr', 'Medtr1g104610' => 'mtr', 'Medtr2g097520' => 'mtr', 'Medtr4g021800' => 'mtr', 'Medtr4g021825' => 'mtr', 'Medtr4g064270' => 'mtr', 'Medtr4g064380' => 'mtr', 'Medtr7g062150' => 'mtr', 'MELO3C003138.2' => 'cme', 'MELO3C005187.2' => 'cme', 'MELO3C009252.2' => 'cme', 'MELO3C014481.2' => 'cme', 'MELO3C020616.2' => 'cme', 'MELO3C020617.2' => 'cme', 'MELO3C020618.2' => 'cme', 'Migut.G00328' => 'egut', 'Migut.J00320' => 'egut', 'Migut.L01000' => 'egut', 'Migut.L01953' => 'egut', 'MSTRG.10253' => 'ama', 'MSTRG.19077' => 'ama', 'MSTRG.26780' => 'ama', 'MSTRG.4023' => 'ama', 'MSTRG.5655' => 'ama', 'MSTRG.9992' => 'ama', 'Nitab4.5_0000043g0310' => 'nta', 'Nitab4.5_0000463g0080' => 'nta', 'Nitab4.5_0000705g0170' => 'nta', 'Nitab4.5_0001326g0060' => 'nta', 'Nitab4.5_0001628g0030' => 'nta', 'Nitab4.5_0002103g0110' => 'nta', 'Nitab4.5_0002946g0030' => 'nta', 'Nitab4.5_0004639g0030' => 'nta', 'Nn2g11149' => 'nnu', 'Nn2g13389' => 'nnu', 'Nn4g25326' => 'nnu', 'Nn4g26290' => 'nnu', 'Nn5g29865' => 'nnu', 'Oeu004163.1' => 'oeu', 'Oeu006901.1' => 'oeu', 'Oeu010096.1' => 'oeu', 'Oeu024340.1' => 'oeu', 'Oeu048369.1' => 'oeu', 'Os01g0973000' => 'osa', 'Os03g0273800' => 'osa', 'Os03g0701200' => 'osa', 'Os03g0834050' => 'osa', 'Os07g0634400' => 'osa', 'Peaxi162Scf00092g01414' => 'pax', 'Peaxi162Scf00165g00818' => 'pax', 'Peaxi162Scf00309g00516' => 'pax', 'Peaxi162Scf00774g00218' => 'pax', 'PGR004G1824' => 'pgr', 'PGR004G2606' => 'pgr', 'PGR031G2716' => 'pgr', 'PGR102G2460' => 'pgr', 'PGR142G2599' => 'pgr', 'PGSC0003DMG400000843' => 'stu', 'PGSC0003DMG400008829' => 'stu', 'PGSC0003DMG400030418' => 'stu', 'PGSC0003DMG400031834' => 'stu', 'PGSC0003DMG401028300' => 'stu', 'PGSC0003DMG402028300' => 'stu', 'Phvul.001G219300' => 'pvu', 'Phvul.007G056000' => 'pvu', 'Phvul.007G208000' => 'pvu', 'Phvul.008G119500' => 'pvu', 'Phvul.010G011200' => 'pvu', 'Phvul.010G014800' => 'pvu', 'Phvul.011G062900' => 'pvu', 'Phvul.L007043' => 'pvu', 'Potri.001G242300' => 'ptr', 'Potri.002G185300' => 'ptr', 'Potri.006G086900' => 'ptr', 'Potri.008G151700' => 'ptr', 'Potri.009G033500' => 'ptr', 'Potri.010G089300' => 'ptr', 'Potri.014G110800' => 'ptr', 'Pp3c27_8130' => 'ppa', 'Pp3c6_27410' => 'ppa', 'PRCOL_00001659' => 'pco', 'PRCOL_00001927' => 'pco', 'PRCOL_00003649' => 'pco', 'Prupe.1G011600' => 'ppe', 'Prupe.3G000800' => 'ppe', 'Prupe.3G001100' => 'ppe', 'Prupe.6G072700' => 'ppe', 'Prupe.6G072800' => 'ppe', 'Prupe.6G257300' => 'ppe', 'Prupe.8G033000' => 'ppe', 'Psat0s2633g0080' => 'psa', 'Psat0s3396g0080' => 'psa', 'Psat0s3396g0200' => 'psa', 'Psat3g139080' => 'psa', 'Psat5g285080' => 'psa', 'Psat6g157760' => 'psa', 'Psat6g208440' => 'psa', 'Psat7g215320' => 'psa', 'Psat7g215400' => 'psa', 'Psat7g235600' => 'psa', 'Psat7g235760' => 'psa', 'PSO063G4603' => 'pso', 'PSO210G0182' => 'pso', 'PSO210G0196' => 'pso', 'PSO339G0394' => 'pso', 'PSO339G4127' => 'pso', 'PSO513G0064' => 'pso', 'PSO761G0079' => 'pso', 'QL01p031003' => 'qlo', 'QL01p031078' => 'qlo', 'QL06p003004' => 'qlo', 'QL07p048731' => 'qlo', 'QL09p037427' => 'qlo', 'RcHm_v2.0_Chr3g0466361' => 'rch', 'RcHm_v2.0_Chr3g0485571' => 'rch', 'RcHm_v2.0_Chr4g0416551' => 'rch', 'RcHm_v2.0_Chr5g0065831' => 'rch', 'Rhsim01G0230500' => 'rsi', 'Rhsim05G0194000' => 'rsi', 'Rhsim08G0250400' => 'rsi', 'Sabra02G0131000' => 'sbr', 'Sabra06G0066300' => 'sbr', 'Sabra08G0115500' => 'sbr', 'Sabra09G0023900' => 'sbr', 'Sabra10G0054000' => 'sbr', 'Sabra14G0081500' => 'sbr', 'Sabra16G0147100' => 'sbr', 'SalBow2G2957' => 'sbo', 'SalBow4G3320' => 'sbo', 'SalBow8G1894' => 'sbo', 'Sc07g0007950' => 'sci', 'Sc12g0001360' => 'sci', 'Sc13g0004330' => 'sci', 'Sc20g0005010' => 'sci', 'Sed0000361' => 'sed', 'Sed0001706' => 'sed', 'Sed0002422' => 'sed', 'Sed0004029' => 'sed', 'Sed0004602' => 'sed', 'Sed0004943' => 'sed', 'Sed0008646' => 'sed', 'Sed0023313' => 'sed', 'Sed0024843' => 'sed', 'SEGI_00081' => 'sgi', 'SEGI_00947' => 'sgi', 'SEGI_04046' => 'sgi', 'SEGI_06880' => 'sgi', 'SEGI_09736' => 'sgi', 'SEGI_12741' => 'sgi', 'SEGI_14530' => 'sgi', 'SEGI_20705' => 'sgi', 'SEGI_26088' => 'sgi', 'SEGI_28323' => 'sgi', 'SEGI_33343' => 'sgi', 'SGA_v2.0_scaffold126G33775' => 'sas', 'SGA_v2.0_scaffold2G01337' => 'sas', 'SGA_v2.0_scaffold38G15006' => 'sas', 'SGA_v2.0_scaffold39G15264' => 'sas', 'SGA_v2.0_scaffold453G51880' => 'sas', 'SHI12696' => 'shi', 'SMO367G1096' => 'smo', 'Solyc01g068630.3' => 'sly', 'Solyc05g011880.3' => 'sly', 'Solyc06g076300.3' => 'sly', 'Solyc09g010940.4' => 'sly', 'Solyc09g075890.3' => 'sly', 'Sopen01g030560' => 'spe', 'Sopen05g006630' => 'spe', 'Sopen06g032720' => 'spe', 'Sopen09g005660' => 'spe', 'Sopen09g030690' => 'spe', 'Sp4g14540' => 'spa', 'Sp4g20030' => 'spa', 'Sp5g01320' => 'spa', 'Sp6g21170' => 'spa', 'Sp6g21180' => 'spa', 'Sp6g21190' => 'spa', 'Sp6g40220' => 'spa', 'TAR362G0122' => 'tar', 'TAR362G1338' => 'tar', 'TAR369G0590' => 'tar', 'TAR371G0824' => 'tar', 'TAR622G1429' => 'tar', 'TAR623G0734' => 'tar', 'TAR625G0441' => 'tar', 'TAR629G0976' => 'tar', 'TAR633G1195' => 'tar', 'TAR636G2660' => 'tar', 'THA.LOC104799440' => 'tha', 'THA.LOC104800966' => 'tha', 'THA.LOC104806559' => 'tha', 'THA.LOC104810765' => 'tha', 'THA.LOC104816266' => 'tha', 'THA.LOC104817419' => 'tha', 'THA.LOC104827021' => 'tha', 'Thecc.01G327400' => 'tca', 'Thecc.04G229200' => 'tca', 'Thecc.05G037400' => 'tca', 'Thecc.09G318600' => 'tca', 'Thecc.09G318700' => 'tca', 'Thhalv10006238m.g' => 'esa', 'Thhalv10014321m.g' => 'esa', 'Thhalv10014335m.g' => 'esa', 'Thhalv10015826m.g' => 'esa', 'Thhalv10017107m.g' => 'esa', 'Thhalv10017180m.g' => 'esa', 'Thhalv10029339m.g' => 'esa', 'TPR.G1699' => 'tpr', 'TPR.G23609' => 'tpr', 'TPR.G3081' => 'tpr', 'TPR.G40397' => 'tpr', 'TPR.G5522' => 'tpr', 'TPR.G5618' => 'tpr', 'TPR.G5626' => 'tpr', 'TWI09G1632' => 'twi', 'TWI23G1230' => 'twi', 'TWI53G1064' => 'twi', 'TWI59G0751' => 'twi', 'TWI74G0947' => 'twi', 'TWI77G0337' => 'twi', 'TWI79G1254' => 'twi', 'unitig_0.g2341' => 'ugi', 'unitig_26.g10006' => 'ugi', 'unitig_26.g10008' => 'ugi', 'unitig_26.g9192' => 'ugi', 'vmacro14547' => 'vma', 'vmacro15333' => 'vma', 'vmacro18743' => 'vma', 'vmacro20166' => 'vma', 'VMungo0331G0523' => 'vmu', 'VMungo0331G1202' => 'vmu', 'VMungo0720G1228' => 'vmu', 'VMungo0720G1514' => 'vmu', 'VMungo1080G0169' => 'vmu', 'VMungo1127G1475' => 'vmu', 'VMungo1383G1208' => 'vmu', 'VMungo1383G1698' => 'vmu', 'Zm00001eb012270' => 'zma', 'Zm00001eb054100' => 'zma', 'Zm00001eb063350' => 'zma', 'Zm00001eb328560' => 'zma', 'Zm00001eb342820' => 'zma', 'Zm00001eb362210' => 'zma', 'Zm00001eb397730' => 'zma', 'Zm00001eb399750' => 'zma' ), 'gf_id' => 'HOM05D000959', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000959' ), 'data_identifier' => 'HOM05D000959', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000959', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '622', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p07100' => 'bna', 'A03p11720' => 'bna', 'A05p08300' => 'bna', 'A05p13380' => 'bna', 'A09p54130' => 'bna', 'A10p16690' => 'bna', 'A10p16700' => 'bna', 'A10p33390' => 'bna', 'Aa31LG10G16020' => 'aar', 'Aa31LG1G11810' => 'aar', 'Aa31LG1G11830' => 'aar', 'Aa31LG1G22510' => 'aar', 'Aa31LG5G4890' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5793' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2310' => 'aag', 'Actinidia08499' => 'ach', 'Actinidia11262' => 'ach', 'Actinidia23926' => 'ach', 'Actinidia34420' => 'ach', 'Actinidia36970' => 'ach', 'Ah.02g111220' => 'amhyb', 'Ah.15g097750' => 'amhyb', 'AL4G27500' => 'aly', 'AL6G11470' => 'aly', 'AL8G35950' => 'aly', 'AL8G35960' => 'aly', 'AL8G35970' => 'aly', 'Aqoxy1G00912' => 'aox', 'Aqoxy2G02253' => 'aox', 'Aqoxy2G02411' => 'aox', 'Aqoxy5G00485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BZ66YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K8ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM4FUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6BF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HFV7XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25JBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0YNNV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MAKK6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P70IT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP2Z6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V61LZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YWP64R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3S9AI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7PGHH' => 'arhy', 'AT2G32150' => 'ath', 'AT3G62040' => 'ath', 'AT5G02230' => 'ath', 'AT5G59480' => 'ath', 'AT5G59490' => 'ath', 'ATR0332G060' => 'atr', 'ATR0559G190' => 'atr', 'ATR0693G294' => 'atr', 'Atru.chr3.3975' => 'acertr', 'Atru.chr3.3976' => 'acertr', 'Atru.chr3.3977' => 'acertr', 'Atru.chr4.2498' => 'acertr', 'Atru.chr5.838' => 'acertr', 'Atru.chr8.1990' => 'acertr', 'Atru.chr8.1991' => 'acertr', 'Atru.chr8.1992' => 'acertr', 'AUR62001759' => 'cqu', 'AUR62009545' => 'cqu', 'AUR62010474' => 'cqu', 'AUR62025820' => 'cqu', 'AUR62030422' => 'cqu', 'AUR62033605' => 'cqu', 'AUR62038615' => 'cqu', 'AUR62041347' => 'cqu', 'BcaB01g04574' => 'bca', 'BcaB02g09263' => 'bca', 'BcaB02g10453' => 'bca', 'BcaB05g22513' => 'bca', 'BcaB08g36253' => 'bca', 'BcaB08g36254' => 'bca', 'BcaC01g06519' => 'bca', 'BcaC02g11889' => 'bca', 'BcaC03g14010' => 'bca', 'BcaC03g18439' => 'bca', 'BcaC04g19765' => 'bca', 'BcaC09g48432' => 'bca', 'BcaNung07302' => 'bca', 'BolC2t06040H' => 'bol', 'BolC2t07346H' => 'bol', 'BolC3t13817H' => 'bol', 'BolC4t22625H' => 'bol', 'BolC4t23297H' => 'bol', 'BolC8t51278H' => 'bol', 'BolC9t58050H' => 'bol', 'BolC9t58051H' => 'bol', 'BolC9t60163H' => 'bol', 'BraA02t04712Z' => 'bra', 'BraA02t05791Z' => 'bra', 'BraA03t10483Z' => 'bra', 'BraA05t19795Z' => 'bra', 'BraA05t20276Z' => 'bra', 'BraA09t40827Z' => 'bra', 'BraA10t43750Z' => 'bra', 'BraA10t43751Z' => 'bra', 'BraA10t45370Z' => 'bra', 'C02p00400' => 'bna', 'C02p12460' => 'bna', 'C03p13680' => 'bna', 'C04p10270' => 'bna', 'C04p17500' => 'bna', 'C08p37010' => 'bna', 'C09p51880' => 'bna', 'C09p51890' => 'bna', 'C09p74300' => 'bna', 'CAN.G179.26' => 'can', 'CAN.G3384.1' => 'can', 'CAN.G394.68' => 'can', 'CAN.G907.13' => 'can', 'CANSAT11G0012' => 'cansat', 'CANSAT25G1586' => 'cansat', 'CANSAT35G0735' => 'cansat', 'CANSAT54G0556' => 'cansat', 'CANSAT64G0356' => 'cansat', 'CANSAT78G2042' => 'cansat', 'CARHR125920' => 'chi', 'CARHR131910' => 'chi', 'CARHR172390' => 'chi', 'CARHR211140' => 'chi', 'CARHR285850' => 'chi', 'CARHR285860' => 'chi', 'Carub.0004s1347' => 'cru', 'Carub.0004s1960' => 'cru', 'Carub.0005s2880' => 'cru', 'Carub.0006s0107' => 'cru', 'Carub.0008s2015' => 'cru', 'Carub.0008s2016' => 'cru', 'Carub.0008s2017' => 'cru', 'Ca_01315_v3' => 'car', 'Ca_05063_v3' => 'car', 'Ca_10231_v3' => 'car', 'Ca_10913_v3' => 'car', 'Ca_19156_v3' => 'car', 'Ca_23644_v3' => 'car', 'Ca_26735_v3' => 'car', 'Cc01_g13130' => 'ccan', 'Cc02_g21690' => 'ccan', 'Cc03_g03600' => 'ccan', 'Cc06_g02510' => 'ccan', 'CDE02G1265' => 'cde', 'CDE05G0415' => 'cde', 'CDE08G1082' => 'cde', 'Cfa005780' => 'cfa', 'Cfa011522' => 'cfa', 'Cfa011523' => 'cfa', 'Cfa015627' => 'cfa', 'Cfa017359' => 'cfa', 'Ciclev10005687m.g' => 'ccl', 'Ciclev10012173m.g' => 'ccl', 'Ciclev10021621m.g' => 'ccl', 'Ciclev10028968m.g' => 'ccl', 'Ciclev10029907m.g' => 'ccl', 'CiPaw.01G164800' => 'cil', 'CiPaw.07G083700' => 'cil', 'CiPaw.07G127000' => 'cil', 'CiPaw.07G136900' => 'cil', 'CiPaw.08G081700' => 'cil', 'CiPaw.09G194600' => 'cil', 'CiPaw.10G146500' => 'cil', 'CiPaw.13G091500' => 'cil', 'CiPaw.13G091600' => 'cil', 'ClCG00G003390' => 'cla', 'ClCG01G007220' => 'cla', 'ClCG03G001370' => 'cla', 'ClCG04G008100' => 'cla', 'ClCG06G006110' => 'cla', 'ClCG06G006130' => 'cla', 'ClCG10G021210' => 'cla', 'COL.COLO4_07648' => 'col', 'COL.COLO4_07650' => 'col', 'COL.COLO4_07651' => 'col', 'COL.COLO4_14780' => 'col', 'COL.COLO4_18546' => 'col', 'COL.COLO4_18547' => 'col', 'COL.COLO4_23103' => 'col', 'COL.COLO4_30419' => 'col', 'COL.COLO4_34232' => 'col', 'Cpa.g.sc169.20' => 'cpa', 'Cpa.g.sc57.45' => 'cpa', 'Cpa.g.sc58.124' => 'cpa', 'Cpa.g.sc58.125' => 'cpa', 'Cpa.g.sc81.118' => 'cpa', 'Cpa.g.sc81.119' => 'cpa', 'Cre12.g524700' => 'cre', 'CsaV3_1G034430' => 'csa', 'CsaV3_1G034440' => 'csa', 'CsaV3_1G034450' => 'csa', 'CsaV3_3G034830' => 'csa', 'CsaV3_4G025090' => 'csa', 'CsaV3_5G018660' => 'csa', 'CsaV3_6G038160' => 'csa', 'CSS0003447' => 'camsi', 'CSS0017840' => 'camsi', 'CSS0019260' => 'camsi', 'CSS0040375' => 'camsi', 'CSS0042533' => 'camsi', 'DCAR_005960' => 'dca', 'DCAR_012104' => 'dca', 'DCAR_012105' => 'dca', 'DCAR_012293' => 'dca', 'DCAR_015632' => 'dca', 'DCAR_024602' => 'dca', 'DCAR_028752' => 'dca', 'Dinv06261' => 'din', 'Dinv13982' => 'din', 'Dinv17029' => 'din', 'Dinv18463' => 'din', 'Dinv33181' => 'din', 'Dinv35585' => 'din', 'Dinv37161' => 'din', 'Dinv42977' => 'din', 'Dinv43122' => 'din', 'Dinv44517' => 'din', 'Duzib093G0256' => 'dzi', 'Duzib106G1254' => 'dzi', 'Duzib128G1789' => 'dzi', 'Duzib133G0633' => 'dzi', 'Duzib138G0510' => 'dzi', 'Duzib150G1084' => 'dzi', 'Duzib168G0488' => 'dzi', 'Duzib168G1523' => 'dzi', 'Duzib170G0133' => 'dzi', 'ECA234G1433' => 'eca', 'ECA236G1432' => 'eca', 'ECA236G2256' => 'eca', 'ECA236G2365' => 'eca', 'ECA236G4830' => 'eca', 'ECA248G1505' => 'eca', 'EL10Ac3g06431' => 'bvu', 'EL10Ac5g12577' => 'bvu', 'EL10Ac6g13533' => 'bvu', 'EL10Ac7g16045' => 'bvu', 'Eucgr.A01281' => 'egr', 'Eucgr.B02326' => 'egr', 'Eucgr.H03532' => 'egr', 'Eucgr.K00553' => 'egr', 'Eucgr.K03116' => 'egr', 'FAN02G3963' => 'fan', 'FAN05G0438' => 'fan', 'FAN09G2434' => 'fan', 'FAN12G3984' => 'fan', 'FAN14G0798' => 'fan', 'FAN17G0652' => 'fan', 'FAN19G1988' => 'fan', 'FAN22G0632' => 'fan', 'FAN23G0387' => 'fan', 'FAN26G1323' => 'fan', 'FAN28G0666' => 'fan', 'FvH4_1g26080' => 'fve', 'FvH4_3g36780' => 'fve', 'FvH4_4g15270' => 'fve', 'FvH4_6g13490' => 'fve', 'Glyma.01G098700' => 'gma', 'Glyma.03G065900' => 'gma', 'Glyma.03G073754' => 'gma', 'Glyma.03G073758' => 'gma', 'Glyma.03G083200' => 'gma', 'Glyma.03G225500' => 'gma', 'Glyma.05G037766' => 'gma', 'Glyma.07G133500' => 'gma', 'Glyma.10G139400' => 'gma', 'Glyma.10G248900' => 'gma', 'Glyma.11G137800' => 'gma', 'Glyma.12G061300' => 'gma', 'Glyma.13G337900' => 'gma', 'Glyma.15G036600' => 'gma', 'Glyma.18G182800' => 'gma', 'Glyma.19G222500' => 'gma', 'Glyma.20G144800' => 'gma', 'Gohir.A01G222000' => 'ghi', 'Gohir.A03G044000' => 'ghi', 'Gohir.A03G044100' => 'ghi', 'Gohir.A04G083100' => 'ghi', 'Gohir.A07G127200' => 'ghi', 'Gohir.A07G132400' => 'ghi', 'Gohir.A08G000700' => 'ghi', 'Gohir.A11G327300' => 'ghi', 'Gohir.D01G211500' => 'ghi', 'Gohir.D03G123400' => 'ghi', 'Gohir.D03G123500' => 'ghi', 'Gohir.D04G121800' => 'ghi', 'Gohir.D07G131500' => 'ghi', 'Gohir.D07G136600' => 'ghi', 'Gohir.D08G011600' => 'ghi', 'Gohir.D11G346200' => 'ghi', 'Gorai.001G142800' => 'gra', 'Gorai.001G148700' => 'gra', 'Gorai.002G257300' => 'gra', 'Gorai.003G130000' => 'gra', 'Gorai.003G130100' => 'gra', 'Gorai.004G005300' => 'gra', 'Gorai.007G376500' => 'gra', 'Gorai.012G104700' => 'gra', 'GSVIVG01017946001' => 'vvi', 'GSVIVG01024928001' => 'vvi', 'GSVIVG01028227001' => 'vvi', 'GSVIVG01034151001' => 'vvi', 'HanXRQChr05g0135031' => 'han', 'HanXRQChr05g0135041' => 'han', 'HanXRQChr05g0140021' => 'han', 'HanXRQChr06g0178981' => 'han', 'HanXRQChr07g0188251' => 'han', 'HanXRQChr08g0235311' => 'han', 'HanXRQChr09g0271011' => 'han', 'HanXRQChr10g0293321' => 'han', 'HanXRQChr13g0388171' => 'han', 'Haze_00916' => 'cav', 'Haze_05063' => 'cav', 'Haze_20814' => 'cav', 'Haze_24128' => 'cav', 'Hma1.2p1_0745F.1_g212010' => 'hma', 'Hma1.2p1_0757F.1_g213260' => 'hma', 'Hma1.2p1_0936F.1_g238840' => 'hma', 'Hma1.2p1_1735F.1_g299890' => 'hma', 'Hma1.2p1_1861F.1_g305685' => 'hma', 'HPP92_003397' => 'vpl', 'HPP92_012597' => 'vpl', 'HPP92_015520' => 'vpl', 'HPP92_015539' => 'vpl', 'HPP92_020373' => 'vpl', 'Hund04938' => 'sun', 'Hund10677' => 'sun', 'Hund11033' => 'sun', 'Hund12155' => 'sun', 'Lalb_Chr01g0022551' => 'lal', 'Lalb_Chr03g0042341' => 'lal', 'Lalb_Chr07g0192931' => 'lal', 'Lalb_Chr12g0209551' => 'lal', 'Lalb_Chr19g0125251' => 'lal', 'Lalb_Chr19g0137891' => 'lal', 'Lalb_Chr21g0304641' => 'lal', 'Lalb_Chr21g0309881' => 'lal', 'Lj1A5T12' => 'lonja', 'Lj1C148G10' => 'lonja', 'Lj2A93T83' => 'lonja', 'Lj3A738G68' => 'lonja', 'Lj3C966T1' => 'lonja', 'Lj3g0018958' => 'lja', 'Lj3g0021831' => 'lja', 'Lj3g0025443' => 'lja', 'Lj4g0026809' => 'lja', 'Lj5g0012558' => 'lja', 'Lj5g0021586' => 'lja', 'Lsat_1_v5_gn_5_156840' => 'lsa', 'Lsat_1_v5_gn_8_73460' => 'lsa', 'Lsat_1_v5_gn_8_73481' => 'lsa', 'Lsat_1_v5_gn_9_31601' => 'lsa', 'Lsat_1_v5_gn_9_77320' => 'lsa', 'Manes.01G171300' => 'mes', 'Manes.01G171400' => 'mes', 'Manes.01G236100' => 'mes', 'Manes.02G130500' => 'mes', 'Manes.02G130600' => 'mes', 'Manes.03G180200' => 'mes', 'Manes.05G007000' => 'mes', 'Manes.08G084400' => 'mes', 'Manes.09G092600' => 'mes', 'Manes.15G027900' => 'mes', 'MBI04_g40948_MAGBIO' => 'mbi', 'MBI14_g12123_MAGBIO' => 'mbi', 'MBI18_g28915_MAGBIO' => 'mbi', 'MCO09G053' => 'mco', 'MCO11G782' => 'mco', 'MCO15G215' => 'mco', 'MD03G1088500' => 'mdo', 'MD03G1088600' => 'mdo', 'MD04G1130800' => 'mdo', 'MD09G1291700' => 'mdo', 'MD11G1097500' => 'mdo', 'MD11G1097600' => 'mdo', 'MD12G1143900' => 'mdo', 'MD13G1191400' => 'mdo', 'MD16G1191500' => 'mdo', 'Medtr1g085570' => 'mtr', 'Medtr1g104610' => 'mtr', 'Medtr2g097520' => 'mtr', 'Medtr4g021800' => 'mtr', 'Medtr4g021825' => 'mtr', 'Medtr4g064270' => 'mtr', 'Medtr4g064380' => 'mtr', 'Medtr7g062150' => 'mtr', 'MELO3C003138.2' => 'cme', 'MELO3C005187.2' => 'cme', 'MELO3C009252.2' => 'cme', 'MELO3C014481.2' => 'cme', 'MELO3C020616.2' => 'cme', 'MELO3C020617.2' => 'cme', 'MELO3C020618.2' => 'cme', 'Migut.G00328' => 'egut', 'Migut.J00320' => 'egut', 'Migut.L01000' => 'egut', 'Migut.L01953' => 'egut', 'MSTRG.10253' => 'ama', 'MSTRG.19077' => 'ama', 'MSTRG.26780' => 'ama', 'MSTRG.4023' => 'ama', 'MSTRG.5655' => 'ama', 'MSTRG.9992' => 'ama', 'Nitab4.5_0000043g0310' => 'nta', 'Nitab4.5_0000463g0080' => 'nta', 'Nitab4.5_0000705g0170' => 'nta', 'Nitab4.5_0001326g0060' => 'nta', 'Nitab4.5_0001628g0030' => 'nta', 'Nitab4.5_0002103g0110' => 'nta', 'Nitab4.5_0002946g0030' => 'nta', 'Nitab4.5_0004639g0030' => 'nta', 'Nn2g11149' => 'nnu', 'Nn2g13389' => 'nnu', 'Nn4g25326' => 'nnu', 'Nn4g26290' => 'nnu', 'Nn5g29865' => 'nnu', 'Oeu004163.1' => 'oeu', 'Oeu006901.1' => 'oeu', 'Oeu010096.1' => 'oeu', 'Oeu024340.1' => 'oeu', 'Oeu048369.1' => 'oeu', 'Os01g0973000' => 'osa', 'Os03g0273800' => 'osa', 'Os03g0701200' => 'osa', 'Os03g0834050' => 'osa', 'Os07g0634400' => 'osa', 'Peaxi162Scf00092g01414' => 'pax', 'Peaxi162Scf00165g00818' => 'pax', 'Peaxi162Scf00309g00516' => 'pax', 'Peaxi162Scf00774g00218' => 'pax', 'PGR004G1824' => 'pgr', 'PGR004G2606' => 'pgr', 'PGR031G2716' => 'pgr', 'PGR102G2460' => 'pgr', 'PGR142G2599' => 'pgr', 'PGSC0003DMG400000843' => 'stu', 'PGSC0003DMG400008829' => 'stu', 'PGSC0003DMG400030418' => 'stu', 'PGSC0003DMG400031834' => 'stu', 'PGSC0003DMG401028300' => 'stu', 'PGSC0003DMG402028300' => 'stu', 'Phvul.001G219300' => 'pvu', 'Phvul.007G056000' => 'pvu', 'Phvul.007G208000' => 'pvu', 'Phvul.008G119500' => 'pvu', 'Phvul.010G011200' => 'pvu', 'Phvul.010G014800' => 'pvu', 'Phvul.011G062900' => 'pvu', 'Phvul.L007043' => 'pvu', 'Potri.001G242300' => 'ptr', 'Potri.002G185300' => 'ptr', 'Potri.006G086900' => 'ptr', 'Potri.008G151700' => 'ptr', 'Potri.009G033500' => 'ptr', 'Potri.010G089300' => 'ptr', 'Potri.014G110800' => 'ptr', 'Pp3c27_8130' => 'ppa', 'Pp3c6_27410' => 'ppa', 'PRCOL_00001659' => 'pco', 'PRCOL_00001927' => 'pco', 'PRCOL_00003649' => 'pco', 'Prupe.1G011600' => 'ppe', 'Prupe.3G000800' => 'ppe', 'Prupe.3G001100' => 'ppe', 'Prupe.6G072700' => 'ppe', 'Prupe.6G072800' => 'ppe', 'Prupe.6G257300' => 'ppe', 'Prupe.8G033000' => 'ppe', 'Psat0s2633g0080' => 'psa', 'Psat0s3396g0080' => 'psa', 'Psat0s3396g0200' => 'psa', 'Psat3g139080' => 'psa', 'Psat5g285080' => 'psa', 'Psat6g157760' => 'psa', 'Psat6g208440' => 'psa', 'Psat7g215320' => 'psa', 'Psat7g215400' => 'psa', 'Psat7g235600' => 'psa', 'Psat7g235760' => 'psa', 'PSO063G4603' => 'pso', 'PSO210G0182' => 'pso', 'PSO210G0196' => 'pso', 'PSO339G0394' => 'pso', 'PSO339G4127' => 'pso', 'PSO513G0064' => 'pso', 'PSO761G0079' => 'pso', 'QL01p031003' => 'qlo', 'QL01p031078' => 'qlo', 'QL06p003004' => 'qlo', 'QL07p048731' => 'qlo', 'QL09p037427' => 'qlo', 'RcHm_v2.0_Chr3g0466361' => 'rch', 'RcHm_v2.0_Chr3g0485571' => 'rch', 'RcHm_v2.0_Chr4g0416551' => 'rch', 'RcHm_v2.0_Chr5g0065831' => 'rch', 'Rhsim01G0230500' => 'rsi', 'Rhsim05G0194000' => 'rsi', 'Rhsim08G0250400' => 'rsi', 'Sabra02G0131000' => 'sbr', 'Sabra06G0066300' => 'sbr', 'Sabra08G0115500' => 'sbr', 'Sabra09G0023900' => 'sbr', 'Sabra10G0054000' => 'sbr', 'Sabra14G0081500' => 'sbr', 'Sabra16G0147100' => 'sbr', 'SalBow2G2957' => 'sbo', 'SalBow4G3320' => 'sbo', 'SalBow8G1894' => 'sbo', 'Sc07g0007950' => 'sci', 'Sc12g0001360' => 'sci', 'Sc13g0004330' => 'sci', 'Sc20g0005010' => 'sci', 'Sed0000361' => 'sed', 'Sed0001706' => 'sed', 'Sed0002422' => 'sed', 'Sed0004029' => 'sed', 'Sed0004602' => 'sed', 'Sed0004943' => 'sed', 'Sed0008646' => 'sed', 'Sed0023313' => 'sed', 'Sed0024843' => 'sed', 'SEGI_00081' => 'sgi', 'SEGI_00947' => 'sgi', 'SEGI_04046' => 'sgi', 'SEGI_06880' => 'sgi', 'SEGI_09736' => 'sgi', 'SEGI_12741' => 'sgi', 'SEGI_14530' => 'sgi', 'SEGI_20705' => 'sgi', 'SEGI_26088' => 'sgi', 'SEGI_28323' => 'sgi', 'SEGI_33343' => 'sgi', 'SGA_v2.0_scaffold126G33775' => 'sas', 'SGA_v2.0_scaffold2G01337' => 'sas', 'SGA_v2.0_scaffold38G15006' => 'sas', 'SGA_v2.0_scaffold39G15264' => 'sas', 'SGA_v2.0_scaffold453G51880' => 'sas', 'SHI12696' => 'shi', 'SMO367G1096' => 'smo', 'Solyc01g068630.3' => 'sly', 'Solyc05g011880.3' => 'sly', 'Solyc06g076300.3' => 'sly', 'Solyc09g010940.4' => 'sly', 'Solyc09g075890.3' => 'sly', 'Sopen01g030560' => 'spe', 'Sopen05g006630' => 'spe', 'Sopen06g032720' => 'spe', 'Sopen09g005660' => 'spe', 'Sopen09g030690' => 'spe', 'Sp4g14540' => 'spa', 'Sp4g20030' => 'spa', 'Sp5g01320' => 'spa', 'Sp6g21170' => 'spa', 'Sp6g21180' => 'spa', 'Sp6g21190' => 'spa', 'Sp6g40220' => 'spa', 'TAR362G0122' => 'tar', 'TAR362G1338' => 'tar', 'TAR369G0590' => 'tar', 'TAR371G0824' => 'tar', 'TAR622G1429' => 'tar', 'TAR623G0734' => 'tar', 'TAR625G0441' => 'tar', 'TAR629G0976' => 'tar', 'TAR633G1195' => 'tar', 'TAR636G2660' => 'tar', 'THA.LOC104799440' => 'tha', 'THA.LOC104800966' => 'tha', 'THA.LOC104806559' => 'tha', 'THA.LOC104810765' => 'tha', 'THA.LOC104816266' => 'tha', 'THA.LOC104817419' => 'tha', 'THA.LOC104827021' => 'tha', 'Thecc.01G327400' => 'tca', 'Thecc.04G229200' => 'tca', 'Thecc.05G037400' => 'tca', 'Thecc.09G318600' => 'tca', 'Thecc.09G318700' => 'tca', 'Thhalv10006238m.g' => 'esa', 'Thhalv10014321m.g' => 'esa', 'Thhalv10014335m.g' => 'esa', 'Thhalv10015826m.g' => 'esa', 'Thhalv10017107m.g' => 'esa', 'Thhalv10017180m.g' => 'esa', 'Thhalv10029339m.g' => 'esa', 'TPR.G1699' => 'tpr', 'TPR.G23609' => 'tpr', 'TPR.G3081' => 'tpr', 'TPR.G40397' => 'tpr', 'TPR.G5522' => 'tpr', 'TPR.G5618' => 'tpr', 'TPR.G5626' => 'tpr', 'TWI09G1632' => 'twi', 'TWI23G1230' => 'twi', 'TWI53G1064' => 'twi', 'TWI59G0751' => 'twi', 'TWI74G0947' => 'twi', 'TWI77G0337' => 'twi', 'TWI79G1254' => 'twi', 'unitig_0.g2341' => 'ugi', 'unitig_26.g10006' => 'ugi', 'unitig_26.g10008' => 'ugi', 'unitig_26.g9192' => 'ugi', 'vmacro14547' => 'vma', 'vmacro15333' => 'vma', 'vmacro18743' => 'vma', 'vmacro20166' => 'vma', 'VMungo0331G0523' => 'vmu', 'VMungo0331G1202' => 'vmu', 'VMungo0720G1228' => 'vmu', 'VMungo0720G1514' => 'vmu', 'VMungo1080G0169' => 'vmu', 'VMungo1127G1475' => 'vmu', 'VMungo1383G1208' => 'vmu', 'VMungo1383G1698' => 'vmu', 'Zm00001eb012270' => 'zma', 'Zm00001eb054100' => 'zma', 'Zm00001eb063350' => 'zma', 'Zm00001eb328560' => 'zma', 'Zm00001eb342820' => 'zma', 'Zm00001eb362210' => 'zma', 'Zm00001eb397730' => 'zma', 'Zm00001eb399750' => 'zma' ) $gf_id = 'HOM05D000959' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000959' ) $data_identifier = 'HOM05D000959' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 5, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 5, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 10, 'mbi' => (int) 3, 'mco' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 2, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 3, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 11, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399750' $species_info = array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ) $local_species = 'pco' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000959', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '622', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p07100' => 'bna', 'A03p11720' => 'bna', 'A05p08300' => 'bna', 'A05p13380' => 'bna', 'A09p54130' => 'bna', 'A10p16690' => 'bna', 'A10p16700' => 'bna', 'A10p33390' => 'bna', 'Aa31LG10G16020' => 'aar', 'Aa31LG1G11810' => 'aar', 'Aa31LG1G11830' => 'aar', 'Aa31LG1G22510' => 'aar', 'Aa31LG5G4890' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5793' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2310' => 'aag', 'Actinidia08499' => 'ach', 'Actinidia11262' => 'ach', 'Actinidia23926' => 'ach', 'Actinidia34420' => 'ach', 'Actinidia36970' => 'ach', 'Ah.02g111220' => 'amhyb', 'Ah.15g097750' => 'amhyb', 'AL4G27500' => 'aly', 'AL6G11470' => 'aly', 'AL8G35950' => 'aly', 'AL8G35960' => 'aly', 'AL8G35970' => 'aly', 'Aqoxy1G00912' => 'aox', 'Aqoxy2G02253' => 'aox', 'Aqoxy2G02411' => 'aox', 'Aqoxy5G00485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BZ66YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K8ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM4FUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6BF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HFV7XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25JBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0YNNV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MAKK6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P70IT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP2Z6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V61LZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YWP64R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3S9AI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7PGHH' => 'arhy', 'AT2G32150' => 'ath', 'AT3G62040' => 'ath', 'AT5G02230' => 'ath', 'AT5G59480' => 'ath', 'AT5G59490' => 'ath', 'ATR0332G060' => 'atr', 'ATR0559G190' => 'atr', 'ATR0693G294' => 'atr', 'Atru.chr3.3975' => 'acertr', 'Atru.chr3.3976' => 'acertr', 'Atru.chr3.3977' => 'acertr', 'Atru.chr4.2498' => 'acertr', 'Atru.chr5.838' => 'acertr', 'Atru.chr8.1990' => 'acertr', 'Atru.chr8.1991' => 'acertr', 'Atru.chr8.1992' => 'acertr', 'AUR62001759' => 'cqu', 'AUR62009545' => 'cqu', 'AUR62010474' => 'cqu', 'AUR62025820' => 'cqu', 'AUR62030422' => 'cqu', 'AUR62033605' => 'cqu', 'AUR62038615' => 'cqu', 'AUR62041347' => 'cqu', 'BcaB01g04574' => 'bca', 'BcaB02g09263' => 'bca', 'BcaB02g10453' => 'bca', 'BcaB05g22513' => 'bca', 'BcaB08g36253' => 'bca', 'BcaB08g36254' => 'bca', 'BcaC01g06519' => 'bca', 'BcaC02g11889' => 'bca', 'BcaC03g14010' => 'bca', 'BcaC03g18439' => 'bca', 'BcaC04g19765' => 'bca', 'BcaC09g48432' => 'bca', 'BcaNung07302' => 'bca', 'BolC2t06040H' => 'bol', 'BolC2t07346H' => 'bol', 'BolC3t13817H' => 'bol', 'BolC4t22625H' => 'bol', 'BolC4t23297H' => 'bol', 'BolC8t51278H' => 'bol', 'BolC9t58050H' => 'bol', 'BolC9t58051H' => 'bol', 'BolC9t60163H' => 'bol', 'BraA02t04712Z' => 'bra', 'BraA02t05791Z' => 'bra', 'BraA03t10483Z' => 'bra', 'BraA05t19795Z' => 'bra', 'BraA05t20276Z' => 'bra', 'BraA09t40827Z' => 'bra', 'BraA10t43750Z' => 'bra', 'BraA10t43751Z' => 'bra', 'BraA10t45370Z' => 'bra', 'C02p00400' => 'bna', 'C02p12460' => 'bna', 'C03p13680' => 'bna', 'C04p10270' => 'bna', 'C04p17500' => 'bna', 'C08p37010' => 'bna', 'C09p51880' => 'bna', 'C09p51890' => 'bna', 'C09p74300' => 'bna', 'CAN.G179.26' => 'can', 'CAN.G3384.1' => 'can', 'CAN.G394.68' => 'can', 'CAN.G907.13' => 'can', 'CANSAT11G0012' => 'cansat', 'CANSAT25G1586' => 'cansat', 'CANSAT35G0735' => 'cansat', 'CANSAT54G0556' => 'cansat', 'CANSAT64G0356' => 'cansat', 'CANSAT78G2042' => 'cansat', 'CARHR125920' => 'chi', 'CARHR131910' => 'chi', 'CARHR172390' => 'chi', 'CARHR211140' => 'chi', 'CARHR285850' => 'chi', 'CARHR285860' => 'chi', 'Carub.0004s1347' => 'cru', 'Carub.0004s1960' => 'cru', 'Carub.0005s2880' => 'cru', 'Carub.0006s0107' => 'cru', 'Carub.0008s2015' => 'cru', 'Carub.0008s2016' => 'cru', 'Carub.0008s2017' => 'cru', 'Ca_01315_v3' => 'car', 'Ca_05063_v3' => 'car', 'Ca_10231_v3' => 'car', 'Ca_10913_v3' => 'car', 'Ca_19156_v3' => 'car', 'Ca_23644_v3' => 'car', 'Ca_26735_v3' => 'car', 'Cc01_g13130' => 'ccan', 'Cc02_g21690' => 'ccan', 'Cc03_g03600' => 'ccan', 'Cc06_g02510' => 'ccan', 'CDE02G1265' => 'cde', 'CDE05G0415' => 'cde', 'CDE08G1082' => 'cde', 'Cfa005780' => 'cfa', 'Cfa011522' => 'cfa', 'Cfa011523' => 'cfa', 'Cfa015627' => 'cfa', 'Cfa017359' => 'cfa', 'Ciclev10005687m.g' => 'ccl', 'Ciclev10012173m.g' => 'ccl', 'Ciclev10021621m.g' => 'ccl', 'Ciclev10028968m.g' => 'ccl', 'Ciclev10029907m.g' => 'ccl', 'CiPaw.01G164800' => 'cil', 'CiPaw.07G083700' => 'cil', 'CiPaw.07G127000' => 'cil', 'CiPaw.07G136900' => 'cil', 'CiPaw.08G081700' => 'cil', 'CiPaw.09G194600' => 'cil', 'CiPaw.10G146500' => 'cil', 'CiPaw.13G091500' => 'cil', 'CiPaw.13G091600' => 'cil', 'ClCG00G003390' => 'cla', 'ClCG01G007220' => 'cla', 'ClCG03G001370' => 'cla', 'ClCG04G008100' => 'cla', 'ClCG06G006110' => 'cla', 'ClCG06G006130' => 'cla', 'ClCG10G021210' => 'cla', 'COL.COLO4_07648' => 'col', 'COL.COLO4_07650' => 'col', 'COL.COLO4_07651' => 'col', 'COL.COLO4_14780' => 'col', 'COL.COLO4_18546' => 'col', 'COL.COLO4_18547' => 'col', 'COL.COLO4_23103' => 'col', 'COL.COLO4_30419' => 'col', 'COL.COLO4_34232' => 'col', 'Cpa.g.sc169.20' => 'cpa', 'Cpa.g.sc57.45' => 'cpa', 'Cpa.g.sc58.124' => 'cpa', 'Cpa.g.sc58.125' => 'cpa', 'Cpa.g.sc81.118' => 'cpa', 'Cpa.g.sc81.119' => 'cpa', 'Cre12.g524700' => 'cre', 'CsaV3_1G034430' => 'csa', 'CsaV3_1G034440' => 'csa', 'CsaV3_1G034450' => 'csa', 'CsaV3_3G034830' => 'csa', 'CsaV3_4G025090' => 'csa', 'CsaV3_5G018660' => 'csa', 'CsaV3_6G038160' => 'csa', 'CSS0003447' => 'camsi', 'CSS0017840' => 'camsi', 'CSS0019260' => 'camsi', 'CSS0040375' => 'camsi', 'CSS0042533' => 'camsi', 'DCAR_005960' => 'dca', 'DCAR_012104' => 'dca', 'DCAR_012105' => 'dca', 'DCAR_012293' => 'dca', 'DCAR_015632' => 'dca', 'DCAR_024602' => 'dca', 'DCAR_028752' => 'dca', 'Dinv06261' => 'din', 'Dinv13982' => 'din', 'Dinv17029' => 'din', 'Dinv18463' => 'din', 'Dinv33181' => 'din', 'Dinv35585' => 'din', 'Dinv37161' => 'din', 'Dinv42977' => 'din', 'Dinv43122' => 'din', 'Dinv44517' => 'din', 'Duzib093G0256' => 'dzi', 'Duzib106G1254' => 'dzi', 'Duzib128G1789' => 'dzi', 'Duzib133G0633' => 'dzi', 'Duzib138G0510' => 'dzi', 'Duzib150G1084' => 'dzi', 'Duzib168G0488' => 'dzi', 'Duzib168G1523' => 'dzi', 'Duzib170G0133' => 'dzi', 'ECA234G1433' => 'eca', 'ECA236G1432' => 'eca', 'ECA236G2256' => 'eca', 'ECA236G2365' => 'eca', 'ECA236G4830' => 'eca', 'ECA248G1505' => 'eca', 'EL10Ac3g06431' => 'bvu', 'EL10Ac5g12577' => 'bvu', 'EL10Ac6g13533' => 'bvu', 'EL10Ac7g16045' => 'bvu', 'Eucgr.A01281' => 'egr', 'Eucgr.B02326' => 'egr', 'Eucgr.H03532' => 'egr', 'Eucgr.K00553' => 'egr', 'Eucgr.K03116' => 'egr', 'FAN02G3963' => 'fan', 'FAN05G0438' => 'fan', 'FAN09G2434' => 'fan', 'FAN12G3984' => 'fan', 'FAN14G0798' => 'fan', 'FAN17G0652' => 'fan', 'FAN19G1988' => 'fan', 'FAN22G0632' => 'fan', 'FAN23G0387' => 'fan', 'FAN26G1323' => 'fan', 'FAN28G0666' => 'fan', 'FvH4_1g26080' => 'fve', 'FvH4_3g36780' => 'fve', 'FvH4_4g15270' => 'fve', 'FvH4_6g13490' => 'fve', 'Glyma.01G098700' => 'gma', 'Glyma.03G065900' => 'gma', 'Glyma.03G073754' => 'gma', 'Glyma.03G073758' => 'gma', 'Glyma.03G083200' => 'gma', 'Glyma.03G225500' => 'gma', 'Glyma.05G037766' => 'gma', 'Glyma.07G133500' => 'gma', 'Glyma.10G139400' => 'gma', 'Glyma.10G248900' => 'gma', 'Glyma.11G137800' => 'gma', 'Glyma.12G061300' => 'gma', 'Glyma.13G337900' => 'gma', 'Glyma.15G036600' => 'gma', 'Glyma.18G182800' => 'gma', 'Glyma.19G222500' => 'gma', 'Glyma.20G144800' => 'gma', 'Gohir.A01G222000' => 'ghi', 'Gohir.A03G044000' => 'ghi', 'Gohir.A03G044100' => 'ghi', 'Gohir.A04G083100' => 'ghi', 'Gohir.A07G127200' => 'ghi', 'Gohir.A07G132400' => 'ghi', 'Gohir.A08G000700' => 'ghi', 'Gohir.A11G327300' => 'ghi', 'Gohir.D01G211500' => 'ghi', 'Gohir.D03G123400' => 'ghi', 'Gohir.D03G123500' => 'ghi', 'Gohir.D04G121800' => 'ghi', 'Gohir.D07G131500' => 'ghi', 'Gohir.D07G136600' => 'ghi', 'Gohir.D08G011600' => 'ghi', 'Gohir.D11G346200' => 'ghi', 'Gorai.001G142800' => 'gra', 'Gorai.001G148700' => 'gra', 'Gorai.002G257300' => 'gra', 'Gorai.003G130000' => 'gra', 'Gorai.003G130100' => 'gra', 'Gorai.004G005300' => 'gra', 'Gorai.007G376500' => 'gra', 'Gorai.012G104700' => 'gra', 'GSVIVG01017946001' => 'vvi', 'GSVIVG01024928001' => 'vvi', 'GSVIVG01028227001' => 'vvi', 'GSVIVG01034151001' => 'vvi', 'HanXRQChr05g0135031' => 'han', 'HanXRQChr05g0135041' => 'han', 'HanXRQChr05g0140021' => 'han', 'HanXRQChr06g0178981' => 'han', 'HanXRQChr07g0188251' => 'han', 'HanXRQChr08g0235311' => 'han', 'HanXRQChr09g0271011' => 'han', 'HanXRQChr10g0293321' => 'han', 'HanXRQChr13g0388171' => 'han', 'Haze_00916' => 'cav', 'Haze_05063' => 'cav', 'Haze_20814' => 'cav', 'Haze_24128' => 'cav', 'Hma1.2p1_0745F.1_g212010' => 'hma', 'Hma1.2p1_0757F.1_g213260' => 'hma', 'Hma1.2p1_0936F.1_g238840' => 'hma', 'Hma1.2p1_1735F.1_g299890' => 'hma', 'Hma1.2p1_1861F.1_g305685' => 'hma', 'HPP92_003397' => 'vpl', 'HPP92_012597' => 'vpl', 'HPP92_015520' => 'vpl', 'HPP92_015539' => 'vpl', 'HPP92_020373' => 'vpl', 'Hund04938' => 'sun', 'Hund10677' => 'sun', 'Hund11033' => 'sun', 'Hund12155' => 'sun', 'Lalb_Chr01g0022551' => 'lal', 'Lalb_Chr03g0042341' => 'lal', 'Lalb_Chr07g0192931' => 'lal', 'Lalb_Chr12g0209551' => 'lal', 'Lalb_Chr19g0125251' => 'lal', 'Lalb_Chr19g0137891' => 'lal', 'Lalb_Chr21g0304641' => 'lal', 'Lalb_Chr21g0309881' => 'lal', 'Lj1A5T12' => 'lonja', 'Lj1C148G10' => 'lonja', 'Lj2A93T83' => 'lonja', 'Lj3A738G68' => 'lonja', 'Lj3C966T1' => 'lonja', 'Lj3g0018958' => 'lja', 'Lj3g0021831' => 'lja', 'Lj3g0025443' => 'lja', 'Lj4g0026809' => 'lja', 'Lj5g0012558' => 'lja', 'Lj5g0021586' => 'lja', 'Lsat_1_v5_gn_5_156840' => 'lsa', 'Lsat_1_v5_gn_8_73460' => 'lsa', 'Lsat_1_v5_gn_8_73481' => 'lsa', 'Lsat_1_v5_gn_9_31601' => 'lsa', 'Lsat_1_v5_gn_9_77320' => 'lsa', 'Manes.01G171300' => 'mes', 'Manes.01G171400' => 'mes', 'Manes.01G236100' => 'mes', 'Manes.02G130500' => 'mes', 'Manes.02G130600' => 'mes', 'Manes.03G180200' => 'mes', 'Manes.05G007000' => 'mes', 'Manes.08G084400' => 'mes', 'Manes.09G092600' => 'mes', 'Manes.15G027900' => 'mes', 'MBI04_g40948_MAGBIO' => 'mbi', 'MBI14_g12123_MAGBIO' => 'mbi', 'MBI18_g28915_MAGBIO' => 'mbi', 'MCO09G053' => 'mco', 'MCO11G782' => 'mco', 'MCO15G215' => 'mco', 'MD03G1088500' => 'mdo', 'MD03G1088600' => 'mdo', 'MD04G1130800' => 'mdo', 'MD09G1291700' => 'mdo', 'MD11G1097500' => 'mdo', 'MD11G1097600' => 'mdo', 'MD12G1143900' => 'mdo', 'MD13G1191400' => 'mdo', 'MD16G1191500' => 'mdo', 'Medtr1g085570' => 'mtr', 'Medtr1g104610' => 'mtr', 'Medtr2g097520' => 'mtr', 'Medtr4g021800' => 'mtr', 'Medtr4g021825' => 'mtr', 'Medtr4g064270' => 'mtr', 'Medtr4g064380' => 'mtr', 'Medtr7g062150' => 'mtr', 'MELO3C003138.2' => 'cme', 'MELO3C005187.2' => 'cme', 'MELO3C009252.2' => 'cme', 'MELO3C014481.2' => 'cme', 'MELO3C020616.2' => 'cme', 'MELO3C020617.2' => 'cme', 'MELO3C020618.2' => 'cme', 'Migut.G00328' => 'egut', 'Migut.J00320' => 'egut', 'Migut.L01000' => 'egut', 'Migut.L01953' => 'egut', 'MSTRG.10253' => 'ama', 'MSTRG.19077' => 'ama', 'MSTRG.26780' => 'ama', 'MSTRG.4023' => 'ama', 'MSTRG.5655' => 'ama', 'MSTRG.9992' => 'ama', 'Nitab4.5_0000043g0310' => 'nta', 'Nitab4.5_0000463g0080' => 'nta', 'Nitab4.5_0000705g0170' => 'nta', 'Nitab4.5_0001326g0060' => 'nta', 'Nitab4.5_0001628g0030' => 'nta', 'Nitab4.5_0002103g0110' => 'nta', 'Nitab4.5_0002946g0030' => 'nta', 'Nitab4.5_0004639g0030' => 'nta', 'Nn2g11149' => 'nnu', 'Nn2g13389' => 'nnu', 'Nn4g25326' => 'nnu', 'Nn4g26290' => 'nnu', 'Nn5g29865' => 'nnu', 'Oeu004163.1' => 'oeu', 'Oeu006901.1' => 'oeu', 'Oeu010096.1' => 'oeu', 'Oeu024340.1' => 'oeu', 'Oeu048369.1' => 'oeu', 'Os01g0973000' => 'osa', 'Os03g0273800' => 'osa', 'Os03g0701200' => 'osa', 'Os03g0834050' => 'osa', 'Os07g0634400' => 'osa', 'Peaxi162Scf00092g01414' => 'pax', 'Peaxi162Scf00165g00818' => 'pax', 'Peaxi162Scf00309g00516' => 'pax', 'Peaxi162Scf00774g00218' => 'pax', 'PGR004G1824' => 'pgr', 'PGR004G2606' => 'pgr', 'PGR031G2716' => 'pgr', 'PGR102G2460' => 'pgr', 'PGR142G2599' => 'pgr', 'PGSC0003DMG400000843' => 'stu', 'PGSC0003DMG400008829' => 'stu', 'PGSC0003DMG400030418' => 'stu', 'PGSC0003DMG400031834' => 'stu', 'PGSC0003DMG401028300' => 'stu', 'PGSC0003DMG402028300' => 'stu', 'Phvul.001G219300' => 'pvu', 'Phvul.007G056000' => 'pvu', 'Phvul.007G208000' => 'pvu', 'Phvul.008G119500' => 'pvu', 'Phvul.010G011200' => 'pvu', 'Phvul.010G014800' => 'pvu', 'Phvul.011G062900' => 'pvu', 'Phvul.L007043' => 'pvu', 'Potri.001G242300' => 'ptr', 'Potri.002G185300' => 'ptr', 'Potri.006G086900' => 'ptr', 'Potri.008G151700' => 'ptr', 'Potri.009G033500' => 'ptr', 'Potri.010G089300' => 'ptr', 'Potri.014G110800' => 'ptr', 'Pp3c27_8130' => 'ppa', 'Pp3c6_27410' => 'ppa', 'PRCOL_00001659' => 'pco', 'PRCOL_00001927' => 'pco', 'PRCOL_00003649' => 'pco', 'Prupe.1G011600' => 'ppe', 'Prupe.3G000800' => 'ppe', 'Prupe.3G001100' => 'ppe', 'Prupe.6G072700' => 'ppe', 'Prupe.6G072800' => 'ppe', 'Prupe.6G257300' => 'ppe', 'Prupe.8G033000' => 'ppe', 'Psat0s2633g0080' => 'psa', 'Psat0s3396g0080' => 'psa', 'Psat0s3396g0200' => 'psa', 'Psat3g139080' => 'psa', 'Psat5g285080' => 'psa', 'Psat6g157760' => 'psa', 'Psat6g208440' => 'psa', 'Psat7g215320' => 'psa', 'Psat7g215400' => 'psa', 'Psat7g235600' => 'psa', 'Psat7g235760' => 'psa', 'PSO063G4603' => 'pso', 'PSO210G0182' => 'pso', 'PSO210G0196' => 'pso', 'PSO339G0394' => 'pso', 'PSO339G4127' => 'pso', 'PSO513G0064' => 'pso', 'PSO761G0079' => 'pso', 'QL01p031003' => 'qlo', 'QL01p031078' => 'qlo', 'QL06p003004' => 'qlo', 'QL07p048731' => 'qlo', 'QL09p037427' => 'qlo', 'RcHm_v2.0_Chr3g0466361' => 'rch', 'RcHm_v2.0_Chr3g0485571' => 'rch', 'RcHm_v2.0_Chr4g0416551' => 'rch', 'RcHm_v2.0_Chr5g0065831' => 'rch', 'Rhsim01G0230500' => 'rsi', 'Rhsim05G0194000' => 'rsi', 'Rhsim08G0250400' => 'rsi', 'Sabra02G0131000' => 'sbr', 'Sabra06G0066300' => 'sbr', 'Sabra08G0115500' => 'sbr', 'Sabra09G0023900' => 'sbr', 'Sabra10G0054000' => 'sbr', 'Sabra14G0081500' => 'sbr', 'Sabra16G0147100' => 'sbr', 'SalBow2G2957' => 'sbo', 'SalBow4G3320' => 'sbo', 'SalBow8G1894' => 'sbo', 'Sc07g0007950' => 'sci', 'Sc12g0001360' => 'sci', 'Sc13g0004330' => 'sci', 'Sc20g0005010' => 'sci', 'Sed0000361' => 'sed', 'Sed0001706' => 'sed', 'Sed0002422' => 'sed', 'Sed0004029' => 'sed', 'Sed0004602' => 'sed', 'Sed0004943' => 'sed', 'Sed0008646' => 'sed', 'Sed0023313' => 'sed', 'Sed0024843' => 'sed', 'SEGI_00081' => 'sgi', 'SEGI_00947' => 'sgi', 'SEGI_04046' => 'sgi', 'SEGI_06880' => 'sgi', 'SEGI_09736' => 'sgi', 'SEGI_12741' => 'sgi', 'SEGI_14530' => 'sgi', 'SEGI_20705' => 'sgi', 'SEGI_26088' => 'sgi', 'SEGI_28323' => 'sgi', 'SEGI_33343' => 'sgi', 'SGA_v2.0_scaffold126G33775' => 'sas', 'SGA_v2.0_scaffold2G01337' => 'sas', 'SGA_v2.0_scaffold38G15006' => 'sas', 'SGA_v2.0_scaffold39G15264' => 'sas', 'SGA_v2.0_scaffold453G51880' => 'sas', 'SHI12696' => 'shi', 'SMO367G1096' => 'smo', 'Solyc01g068630.3' => 'sly', 'Solyc05g011880.3' => 'sly', 'Solyc06g076300.3' => 'sly', 'Solyc09g010940.4' => 'sly', 'Solyc09g075890.3' => 'sly', 'Sopen01g030560' => 'spe', 'Sopen05g006630' => 'spe', 'Sopen06g032720' => 'spe', 'Sopen09g005660' => 'spe', 'Sopen09g030690' => 'spe', 'Sp4g14540' => 'spa', 'Sp4g20030' => 'spa', 'Sp5g01320' => 'spa', 'Sp6g21170' => 'spa', 'Sp6g21180' => 'spa', 'Sp6g21190' => 'spa', 'Sp6g40220' => 'spa', 'TAR362G0122' => 'tar', 'TAR362G1338' => 'tar', 'TAR369G0590' => 'tar', 'TAR371G0824' => 'tar', 'TAR622G1429' => 'tar', 'TAR623G0734' => 'tar', 'TAR625G0441' => 'tar', 'TAR629G0976' => 'tar', 'TAR633G1195' => 'tar', 'TAR636G2660' => 'tar', 'THA.LOC104799440' => 'tha', 'THA.LOC104800966' => 'tha', 'THA.LOC104806559' => 'tha', 'THA.LOC104810765' => 'tha', 'THA.LOC104816266' => 'tha', 'THA.LOC104817419' => 'tha', 'THA.LOC104827021' => 'tha', 'Thecc.01G327400' => 'tca', 'Thecc.04G229200' => 'tca', 'Thecc.05G037400' => 'tca', 'Thecc.09G318600' => 'tca', 'Thecc.09G318700' => 'tca', 'Thhalv10006238m.g' => 'esa', 'Thhalv10014321m.g' => 'esa', 'Thhalv10014335m.g' => 'esa', 'Thhalv10015826m.g' => 'esa', 'Thhalv10017107m.g' => 'esa', 'Thhalv10017180m.g' => 'esa', 'Thhalv10029339m.g' => 'esa', 'TPR.G1699' => 'tpr', 'TPR.G23609' => 'tpr', 'TPR.G3081' => 'tpr', 'TPR.G40397' => 'tpr', 'TPR.G5522' => 'tpr', 'TPR.G5618' => 'tpr', 'TPR.G5626' => 'tpr', 'TWI09G1632' => 'twi', 'TWI23G1230' => 'twi', 'TWI53G1064' => 'twi', 'TWI59G0751' => 'twi', 'TWI74G0947' => 'twi', 'TWI77G0337' => 'twi', 'TWI79G1254' => 'twi', 'unitig_0.g2341' => 'ugi', 'unitig_26.g10006' => 'ugi', 'unitig_26.g10008' => 'ugi', 'unitig_26.g9192' => 'ugi', 'vmacro14547' => 'vma', 'vmacro15333' => 'vma', 'vmacro18743' => 'vma', 'vmacro20166' => 'vma', 'VMungo0331G0523' => 'vmu', 'VMungo0331G1202' => 'vmu', 'VMungo0720G1228' => 'vmu', 'VMungo0720G1514' => 'vmu', 'VMungo1080G0169' => 'vmu', 'VMungo1127G1475' => 'vmu', 'VMungo1383G1208' => 'vmu', 'VMungo1383G1698' => 'vmu', 'Zm00001eb012270' => 'zma', 'Zm00001eb054100' => 'zma', 'Zm00001eb063350' => 'zma', 'Zm00001eb328560' => 'zma', 'Zm00001eb342820' => 'zma', 'Zm00001eb362210' => 'zma', 'Zm00001eb397730' => 'zma', 'Zm00001eb399750' => 'zma' ), 'gf_id' => 'HOM05D000959', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000959' ), 'data_identifier' => 'HOM05D000959', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000959', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '622', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p07100' => 'bna', 'A03p11720' => 'bna', 'A05p08300' => 'bna', 'A05p13380' => 'bna', 'A09p54130' => 'bna', 'A10p16690' => 'bna', 'A10p16700' => 'bna', 'A10p33390' => 'bna', 'Aa31LG10G16020' => 'aar', 'Aa31LG1G11810' => 'aar', 'Aa31LG1G11830' => 'aar', 'Aa31LG1G22510' => 'aar', 'Aa31LG5G4890' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5793' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2310' => 'aag', 'Actinidia08499' => 'ach', 'Actinidia11262' => 'ach', 'Actinidia23926' => 'ach', 'Actinidia34420' => 'ach', 'Actinidia36970' => 'ach', 'Ah.02g111220' => 'amhyb', 'Ah.15g097750' => 'amhyb', 'AL4G27500' => 'aly', 'AL6G11470' => 'aly', 'AL8G35950' => 'aly', 'AL8G35960' => 'aly', 'AL8G35970' => 'aly', 'Aqoxy1G00912' => 'aox', 'Aqoxy2G02253' => 'aox', 'Aqoxy2G02411' => 'aox', 'Aqoxy5G00485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BZ66YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K8ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM4FUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6BF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HFV7XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25JBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0YNNV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MAKK6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P70IT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP2Z6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V61LZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YWP64R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3S9AI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7PGHH' => 'arhy', 'AT2G32150' => 'ath', 'AT3G62040' => 'ath', 'AT5G02230' => 'ath', 'AT5G59480' => 'ath', 'AT5G59490' => 'ath', 'ATR0332G060' => 'atr', 'ATR0559G190' => 'atr', 'ATR0693G294' => 'atr', 'Atru.chr3.3975' => 'acertr', 'Atru.chr3.3976' => 'acertr', 'Atru.chr3.3977' => 'acertr', 'Atru.chr4.2498' => 'acertr', 'Atru.chr5.838' => 'acertr', 'Atru.chr8.1990' => 'acertr', 'Atru.chr8.1991' => 'acertr', 'Atru.chr8.1992' => 'acertr', 'AUR62001759' => 'cqu', 'AUR62009545' => 'cqu', 'AUR62010474' => 'cqu', 'AUR62025820' => 'cqu', 'AUR62030422' => 'cqu', 'AUR62033605' => 'cqu', 'AUR62038615' => 'cqu', 'AUR62041347' => 'cqu', 'BcaB01g04574' => 'bca', 'BcaB02g09263' => 'bca', 'BcaB02g10453' => 'bca', 'BcaB05g22513' => 'bca', 'BcaB08g36253' => 'bca', 'BcaB08g36254' => 'bca', 'BcaC01g06519' => 'bca', 'BcaC02g11889' => 'bca', 'BcaC03g14010' => 'bca', 'BcaC03g18439' => 'bca', 'BcaC04g19765' => 'bca', 'BcaC09g48432' => 'bca', 'BcaNung07302' => 'bca', 'BolC2t06040H' => 'bol', 'BolC2t07346H' => 'bol', 'BolC3t13817H' => 'bol', 'BolC4t22625H' => 'bol', 'BolC4t23297H' => 'bol', 'BolC8t51278H' => 'bol', 'BolC9t58050H' => 'bol', 'BolC9t58051H' => 'bol', 'BolC9t60163H' => 'bol', 'BraA02t04712Z' => 'bra', 'BraA02t05791Z' => 'bra', 'BraA03t10483Z' => 'bra', 'BraA05t19795Z' => 'bra', 'BraA05t20276Z' => 'bra', 'BraA09t40827Z' => 'bra', 'BraA10t43750Z' => 'bra', 'BraA10t43751Z' => 'bra', 'BraA10t45370Z' => 'bra', 'C02p00400' => 'bna', 'C02p12460' => 'bna', 'C03p13680' => 'bna', 'C04p10270' => 'bna', 'C04p17500' => 'bna', 'C08p37010' => 'bna', 'C09p51880' => 'bna', 'C09p51890' => 'bna', 'C09p74300' => 'bna', 'CAN.G179.26' => 'can', 'CAN.G3384.1' => 'can', 'CAN.G394.68' => 'can', 'CAN.G907.13' => 'can', 'CANSAT11G0012' => 'cansat', 'CANSAT25G1586' => 'cansat', 'CANSAT35G0735' => 'cansat', 'CANSAT54G0556' => 'cansat', 'CANSAT64G0356' => 'cansat', 'CANSAT78G2042' => 'cansat', 'CARHR125920' => 'chi', 'CARHR131910' => 'chi', 'CARHR172390' => 'chi', 'CARHR211140' => 'chi', 'CARHR285850' => 'chi', 'CARHR285860' => 'chi', 'Carub.0004s1347' => 'cru', 'Carub.0004s1960' => 'cru', 'Carub.0005s2880' => 'cru', 'Carub.0006s0107' => 'cru', 'Carub.0008s2015' => 'cru', 'Carub.0008s2016' => 'cru', 'Carub.0008s2017' => 'cru', 'Ca_01315_v3' => 'car', 'Ca_05063_v3' => 'car', 'Ca_10231_v3' => 'car', 'Ca_10913_v3' => 'car', 'Ca_19156_v3' => 'car', 'Ca_23644_v3' => 'car', 'Ca_26735_v3' => 'car', 'Cc01_g13130' => 'ccan', 'Cc02_g21690' => 'ccan', 'Cc03_g03600' => 'ccan', 'Cc06_g02510' => 'ccan', 'CDE02G1265' => 'cde', 'CDE05G0415' => 'cde', 'CDE08G1082' => 'cde', 'Cfa005780' => 'cfa', 'Cfa011522' => 'cfa', 'Cfa011523' => 'cfa', 'Cfa015627' => 'cfa', 'Cfa017359' => 'cfa', 'Ciclev10005687m.g' => 'ccl', 'Ciclev10012173m.g' => 'ccl', 'Ciclev10021621m.g' => 'ccl', 'Ciclev10028968m.g' => 'ccl', 'Ciclev10029907m.g' => 'ccl', 'CiPaw.01G164800' => 'cil', 'CiPaw.07G083700' => 'cil', 'CiPaw.07G127000' => 'cil', 'CiPaw.07G136900' => 'cil', 'CiPaw.08G081700' => 'cil', 'CiPaw.09G194600' => 'cil', 'CiPaw.10G146500' => 'cil', 'CiPaw.13G091500' => 'cil', 'CiPaw.13G091600' => 'cil', 'ClCG00G003390' => 'cla', 'ClCG01G007220' => 'cla', 'ClCG03G001370' => 'cla', 'ClCG04G008100' => 'cla', 'ClCG06G006110' => 'cla', 'ClCG06G006130' => 'cla', 'ClCG10G021210' => 'cla', 'COL.COLO4_07648' => 'col', 'COL.COLO4_07650' => 'col', 'COL.COLO4_07651' => 'col', 'COL.COLO4_14780' => 'col', 'COL.COLO4_18546' => 'col', 'COL.COLO4_18547' => 'col', 'COL.COLO4_23103' => 'col', 'COL.COLO4_30419' => 'col', 'COL.COLO4_34232' => 'col', 'Cpa.g.sc169.20' => 'cpa', 'Cpa.g.sc57.45' => 'cpa', 'Cpa.g.sc58.124' => 'cpa', 'Cpa.g.sc58.125' => 'cpa', 'Cpa.g.sc81.118' => 'cpa', 'Cpa.g.sc81.119' => 'cpa', 'Cre12.g524700' => 'cre', 'CsaV3_1G034430' => 'csa', 'CsaV3_1G034440' => 'csa', 'CsaV3_1G034450' => 'csa', 'CsaV3_3G034830' => 'csa', 'CsaV3_4G025090' => 'csa', 'CsaV3_5G018660' => 'csa', 'CsaV3_6G038160' => 'csa', 'CSS0003447' => 'camsi', 'CSS0017840' => 'camsi', 'CSS0019260' => 'camsi', 'CSS0040375' => 'camsi', 'CSS0042533' => 'camsi', 'DCAR_005960' => 'dca', 'DCAR_012104' => 'dca', 'DCAR_012105' => 'dca', 'DCAR_012293' => 'dca', 'DCAR_015632' => 'dca', 'DCAR_024602' => 'dca', 'DCAR_028752' => 'dca', 'Dinv06261' => 'din', 'Dinv13982' => 'din', 'Dinv17029' => 'din', 'Dinv18463' => 'din', 'Dinv33181' => 'din', 'Dinv35585' => 'din', 'Dinv37161' => 'din', 'Dinv42977' => 'din', 'Dinv43122' => 'din', 'Dinv44517' => 'din', 'Duzib093G0256' => 'dzi', 'Duzib106G1254' => 'dzi', 'Duzib128G1789' => 'dzi', 'Duzib133G0633' => 'dzi', 'Duzib138G0510' => 'dzi', 'Duzib150G1084' => 'dzi', 'Duzib168G0488' => 'dzi', 'Duzib168G1523' => 'dzi', 'Duzib170G0133' => 'dzi', 'ECA234G1433' => 'eca', 'ECA236G1432' => 'eca', 'ECA236G2256' => 'eca', 'ECA236G2365' => 'eca', 'ECA236G4830' => 'eca', 'ECA248G1505' => 'eca', 'EL10Ac3g06431' => 'bvu', 'EL10Ac5g12577' => 'bvu', 'EL10Ac6g13533' => 'bvu', 'EL10Ac7g16045' => 'bvu', 'Eucgr.A01281' => 'egr', 'Eucgr.B02326' => 'egr', 'Eucgr.H03532' => 'egr', 'Eucgr.K00553' => 'egr', 'Eucgr.K03116' => 'egr', 'FAN02G3963' => 'fan', 'FAN05G0438' => 'fan', 'FAN09G2434' => 'fan', 'FAN12G3984' => 'fan', 'FAN14G0798' => 'fan', 'FAN17G0652' => 'fan', 'FAN19G1988' => 'fan', 'FAN22G0632' => 'fan', 'FAN23G0387' => 'fan', 'FAN26G1323' => 'fan', 'FAN28G0666' => 'fan', 'FvH4_1g26080' => 'fve', 'FvH4_3g36780' => 'fve', 'FvH4_4g15270' => 'fve', 'FvH4_6g13490' => 'fve', 'Glyma.01G098700' => 'gma', 'Glyma.03G065900' => 'gma', 'Glyma.03G073754' => 'gma', 'Glyma.03G073758' => 'gma', 'Glyma.03G083200' => 'gma', 'Glyma.03G225500' => 'gma', 'Glyma.05G037766' => 'gma', 'Glyma.07G133500' => 'gma', 'Glyma.10G139400' => 'gma', 'Glyma.10G248900' => 'gma', 'Glyma.11G137800' => 'gma', 'Glyma.12G061300' => 'gma', 'Glyma.13G337900' => 'gma', 'Glyma.15G036600' => 'gma', 'Glyma.18G182800' => 'gma', 'Glyma.19G222500' => 'gma', 'Glyma.20G144800' => 'gma', 'Gohir.A01G222000' => 'ghi', 'Gohir.A03G044000' => 'ghi', 'Gohir.A03G044100' => 'ghi', 'Gohir.A04G083100' => 'ghi', 'Gohir.A07G127200' => 'ghi', 'Gohir.A07G132400' => 'ghi', 'Gohir.A08G000700' => 'ghi', 'Gohir.A11G327300' => 'ghi', 'Gohir.D01G211500' => 'ghi', 'Gohir.D03G123400' => 'ghi', 'Gohir.D03G123500' => 'ghi', 'Gohir.D04G121800' => 'ghi', 'Gohir.D07G131500' => 'ghi', 'Gohir.D07G136600' => 'ghi', 'Gohir.D08G011600' => 'ghi', 'Gohir.D11G346200' => 'ghi', 'Gorai.001G142800' => 'gra', 'Gorai.001G148700' => 'gra', 'Gorai.002G257300' => 'gra', 'Gorai.003G130000' => 'gra', 'Gorai.003G130100' => 'gra', 'Gorai.004G005300' => 'gra', 'Gorai.007G376500' => 'gra', 'Gorai.012G104700' => 'gra', 'GSVIVG01017946001' => 'vvi', 'GSVIVG01024928001' => 'vvi', 'GSVIVG01028227001' => 'vvi', 'GSVIVG01034151001' => 'vvi', 'HanXRQChr05g0135031' => 'han', 'HanXRQChr05g0135041' => 'han', 'HanXRQChr05g0140021' => 'han', 'HanXRQChr06g0178981' => 'han', 'HanXRQChr07g0188251' => 'han', 'HanXRQChr08g0235311' => 'han', 'HanXRQChr09g0271011' => 'han', 'HanXRQChr10g0293321' => 'han', 'HanXRQChr13g0388171' => 'han', 'Haze_00916' => 'cav', 'Haze_05063' => 'cav', 'Haze_20814' => 'cav', 'Haze_24128' => 'cav', 'Hma1.2p1_0745F.1_g212010' => 'hma', 'Hma1.2p1_0757F.1_g213260' => 'hma', 'Hma1.2p1_0936F.1_g238840' => 'hma', 'Hma1.2p1_1735F.1_g299890' => 'hma', 'Hma1.2p1_1861F.1_g305685' => 'hma', 'HPP92_003397' => 'vpl', 'HPP92_012597' => 'vpl', 'HPP92_015520' => 'vpl', 'HPP92_015539' => 'vpl', 'HPP92_020373' => 'vpl', 'Hund04938' => 'sun', 'Hund10677' => 'sun', 'Hund11033' => 'sun', 'Hund12155' => 'sun', 'Lalb_Chr01g0022551' => 'lal', 'Lalb_Chr03g0042341' => 'lal', 'Lalb_Chr07g0192931' => 'lal', 'Lalb_Chr12g0209551' => 'lal', 'Lalb_Chr19g0125251' => 'lal', 'Lalb_Chr19g0137891' => 'lal', 'Lalb_Chr21g0304641' => 'lal', 'Lalb_Chr21g0309881' => 'lal', 'Lj1A5T12' => 'lonja', 'Lj1C148G10' => 'lonja', 'Lj2A93T83' => 'lonja', 'Lj3A738G68' => 'lonja', 'Lj3C966T1' => 'lonja', 'Lj3g0018958' => 'lja', 'Lj3g0021831' => 'lja', 'Lj3g0025443' => 'lja', 'Lj4g0026809' => 'lja', 'Lj5g0012558' => 'lja', 'Lj5g0021586' => 'lja', 'Lsat_1_v5_gn_5_156840' => 'lsa', 'Lsat_1_v5_gn_8_73460' => 'lsa', 'Lsat_1_v5_gn_8_73481' => 'lsa', 'Lsat_1_v5_gn_9_31601' => 'lsa', 'Lsat_1_v5_gn_9_77320' => 'lsa', 'Manes.01G171300' => 'mes', 'Manes.01G171400' => 'mes', 'Manes.01G236100' => 'mes', 'Manes.02G130500' => 'mes', 'Manes.02G130600' => 'mes', 'Manes.03G180200' => 'mes', 'Manes.05G007000' => 'mes', 'Manes.08G084400' => 'mes', 'Manes.09G092600' => 'mes', 'Manes.15G027900' => 'mes', 'MBI04_g40948_MAGBIO' => 'mbi', 'MBI14_g12123_MAGBIO' => 'mbi', 'MBI18_g28915_MAGBIO' => 'mbi', 'MCO09G053' => 'mco', 'MCO11G782' => 'mco', 'MCO15G215' => 'mco', 'MD03G1088500' => 'mdo', 'MD03G1088600' => 'mdo', 'MD04G1130800' => 'mdo', 'MD09G1291700' => 'mdo', 'MD11G1097500' => 'mdo', 'MD11G1097600' => 'mdo', 'MD12G1143900' => 'mdo', 'MD13G1191400' => 'mdo', 'MD16G1191500' => 'mdo', 'Medtr1g085570' => 'mtr', 'Medtr1g104610' => 'mtr', 'Medtr2g097520' => 'mtr', 'Medtr4g021800' => 'mtr', 'Medtr4g021825' => 'mtr', 'Medtr4g064270' => 'mtr', 'Medtr4g064380' => 'mtr', 'Medtr7g062150' => 'mtr', 'MELO3C003138.2' => 'cme', 'MELO3C005187.2' => 'cme', 'MELO3C009252.2' => 'cme', 'MELO3C014481.2' => 'cme', 'MELO3C020616.2' => 'cme', 'MELO3C020617.2' => 'cme', 'MELO3C020618.2' => 'cme', 'Migut.G00328' => 'egut', 'Migut.J00320' => 'egut', 'Migut.L01000' => 'egut', 'Migut.L01953' => 'egut', 'MSTRG.10253' => 'ama', 'MSTRG.19077' => 'ama', 'MSTRG.26780' => 'ama', 'MSTRG.4023' => 'ama', 'MSTRG.5655' => 'ama', 'MSTRG.9992' => 'ama', 'Nitab4.5_0000043g0310' => 'nta', 'Nitab4.5_0000463g0080' => 'nta', 'Nitab4.5_0000705g0170' => 'nta', 'Nitab4.5_0001326g0060' => 'nta', 'Nitab4.5_0001628g0030' => 'nta', 'Nitab4.5_0002103g0110' => 'nta', 'Nitab4.5_0002946g0030' => 'nta', 'Nitab4.5_0004639g0030' => 'nta', 'Nn2g11149' => 'nnu', 'Nn2g13389' => 'nnu', 'Nn4g25326' => 'nnu', 'Nn4g26290' => 'nnu', 'Nn5g29865' => 'nnu', 'Oeu004163.1' => 'oeu', 'Oeu006901.1' => 'oeu', 'Oeu010096.1' => 'oeu', 'Oeu024340.1' => 'oeu', 'Oeu048369.1' => 'oeu', 'Os01g0973000' => 'osa', 'Os03g0273800' => 'osa', 'Os03g0701200' => 'osa', 'Os03g0834050' => 'osa', 'Os07g0634400' => 'osa', 'Peaxi162Scf00092g01414' => 'pax', 'Peaxi162Scf00165g00818' => 'pax', 'Peaxi162Scf00309g00516' => 'pax', 'Peaxi162Scf00774g00218' => 'pax', 'PGR004G1824' => 'pgr', 'PGR004G2606' => 'pgr', 'PGR031G2716' => 'pgr', 'PGR102G2460' => 'pgr', 'PGR142G2599' => 'pgr', 'PGSC0003DMG400000843' => 'stu', 'PGSC0003DMG400008829' => 'stu', 'PGSC0003DMG400030418' => 'stu', 'PGSC0003DMG400031834' => 'stu', 'PGSC0003DMG401028300' => 'stu', 'PGSC0003DMG402028300' => 'stu', 'Phvul.001G219300' => 'pvu', 'Phvul.007G056000' => 'pvu', 'Phvul.007G208000' => 'pvu', 'Phvul.008G119500' => 'pvu', 'Phvul.010G011200' => 'pvu', 'Phvul.010G014800' => 'pvu', 'Phvul.011G062900' => 'pvu', 'Phvul.L007043' => 'pvu', 'Potri.001G242300' => 'ptr', 'Potri.002G185300' => 'ptr', 'Potri.006G086900' => 'ptr', 'Potri.008G151700' => 'ptr', 'Potri.009G033500' => 'ptr', 'Potri.010G089300' => 'ptr', 'Potri.014G110800' => 'ptr', 'Pp3c27_8130' => 'ppa', 'Pp3c6_27410' => 'ppa', 'PRCOL_00001659' => 'pco', 'PRCOL_00001927' => 'pco', 'PRCOL_00003649' => 'pco', 'Prupe.1G011600' => 'ppe', 'Prupe.3G000800' => 'ppe', 'Prupe.3G001100' => 'ppe', 'Prupe.6G072700' => 'ppe', 'Prupe.6G072800' => 'ppe', 'Prupe.6G257300' => 'ppe', 'Prupe.8G033000' => 'ppe', 'Psat0s2633g0080' => 'psa', 'Psat0s3396g0080' => 'psa', 'Psat0s3396g0200' => 'psa', 'Psat3g139080' => 'psa', 'Psat5g285080' => 'psa', 'Psat6g157760' => 'psa', 'Psat6g208440' => 'psa', 'Psat7g215320' => 'psa', 'Psat7g215400' => 'psa', 'Psat7g235600' => 'psa', 'Psat7g235760' => 'psa', 'PSO063G4603' => 'pso', 'PSO210G0182' => 'pso', 'PSO210G0196' => 'pso', 'PSO339G0394' => 'pso', 'PSO339G4127' => 'pso', 'PSO513G0064' => 'pso', 'PSO761G0079' => 'pso', 'QL01p031003' => 'qlo', 'QL01p031078' => 'qlo', 'QL06p003004' => 'qlo', 'QL07p048731' => 'qlo', 'QL09p037427' => 'qlo', 'RcHm_v2.0_Chr3g0466361' => 'rch', 'RcHm_v2.0_Chr3g0485571' => 'rch', 'RcHm_v2.0_Chr4g0416551' => 'rch', 'RcHm_v2.0_Chr5g0065831' => 'rch', 'Rhsim01G0230500' => 'rsi', 'Rhsim05G0194000' => 'rsi', 'Rhsim08G0250400' => 'rsi', 'Sabra02G0131000' => 'sbr', 'Sabra06G0066300' => 'sbr', 'Sabra08G0115500' => 'sbr', 'Sabra09G0023900' => 'sbr', 'Sabra10G0054000' => 'sbr', 'Sabra14G0081500' => 'sbr', 'Sabra16G0147100' => 'sbr', 'SalBow2G2957' => 'sbo', 'SalBow4G3320' => 'sbo', 'SalBow8G1894' => 'sbo', 'Sc07g0007950' => 'sci', 'Sc12g0001360' => 'sci', 'Sc13g0004330' => 'sci', 'Sc20g0005010' => 'sci', 'Sed0000361' => 'sed', 'Sed0001706' => 'sed', 'Sed0002422' => 'sed', 'Sed0004029' => 'sed', 'Sed0004602' => 'sed', 'Sed0004943' => 'sed', 'Sed0008646' => 'sed', 'Sed0023313' => 'sed', 'Sed0024843' => 'sed', 'SEGI_00081' => 'sgi', 'SEGI_00947' => 'sgi', 'SEGI_04046' => 'sgi', 'SEGI_06880' => 'sgi', 'SEGI_09736' => 'sgi', 'SEGI_12741' => 'sgi', 'SEGI_14530' => 'sgi', 'SEGI_20705' => 'sgi', 'SEGI_26088' => 'sgi', 'SEGI_28323' => 'sgi', 'SEGI_33343' => 'sgi', 'SGA_v2.0_scaffold126G33775' => 'sas', 'SGA_v2.0_scaffold2G01337' => 'sas', 'SGA_v2.0_scaffold38G15006' => 'sas', 'SGA_v2.0_scaffold39G15264' => 'sas', 'SGA_v2.0_scaffold453G51880' => 'sas', 'SHI12696' => 'shi', 'SMO367G1096' => 'smo', 'Solyc01g068630.3' => 'sly', 'Solyc05g011880.3' => 'sly', 'Solyc06g076300.3' => 'sly', 'Solyc09g010940.4' => 'sly', 'Solyc09g075890.3' => 'sly', 'Sopen01g030560' => 'spe', 'Sopen05g006630' => 'spe', 'Sopen06g032720' => 'spe', 'Sopen09g005660' => 'spe', 'Sopen09g030690' => 'spe', 'Sp4g14540' => 'spa', 'Sp4g20030' => 'spa', 'Sp5g01320' => 'spa', 'Sp6g21170' => 'spa', 'Sp6g21180' => 'spa', 'Sp6g21190' => 'spa', 'Sp6g40220' => 'spa', 'TAR362G0122' => 'tar', 'TAR362G1338' => 'tar', 'TAR369G0590' => 'tar', 'TAR371G0824' => 'tar', 'TAR622G1429' => 'tar', 'TAR623G0734' => 'tar', 'TAR625G0441' => 'tar', 'TAR629G0976' => 'tar', 'TAR633G1195' => 'tar', 'TAR636G2660' => 'tar', 'THA.LOC104799440' => 'tha', 'THA.LOC104800966' => 'tha', 'THA.LOC104806559' => 'tha', 'THA.LOC104810765' => 'tha', 'THA.LOC104816266' => 'tha', 'THA.LOC104817419' => 'tha', 'THA.LOC104827021' => 'tha', 'Thecc.01G327400' => 'tca', 'Thecc.04G229200' => 'tca', 'Thecc.05G037400' => 'tca', 'Thecc.09G318600' => 'tca', 'Thecc.09G318700' => 'tca', 'Thhalv10006238m.g' => 'esa', 'Thhalv10014321m.g' => 'esa', 'Thhalv10014335m.g' => 'esa', 'Thhalv10015826m.g' => 'esa', 'Thhalv10017107m.g' => 'esa', 'Thhalv10017180m.g' => 'esa', 'Thhalv10029339m.g' => 'esa', 'TPR.G1699' => 'tpr', 'TPR.G23609' => 'tpr', 'TPR.G3081' => 'tpr', 'TPR.G40397' => 'tpr', 'TPR.G5522' => 'tpr', 'TPR.G5618' => 'tpr', 'TPR.G5626' => 'tpr', 'TWI09G1632' => 'twi', 'TWI23G1230' => 'twi', 'TWI53G1064' => 'twi', 'TWI59G0751' => 'twi', 'TWI74G0947' => 'twi', 'TWI77G0337' => 'twi', 'TWI79G1254' => 'twi', 'unitig_0.g2341' => 'ugi', 'unitig_26.g10006' => 'ugi', 'unitig_26.g10008' => 'ugi', 'unitig_26.g9192' => 'ugi', 'vmacro14547' => 'vma', 'vmacro15333' => 'vma', 'vmacro18743' => 'vma', 'vmacro20166' => 'vma', 'VMungo0331G0523' => 'vmu', 'VMungo0331G1202' => 'vmu', 'VMungo0720G1228' => 'vmu', 'VMungo0720G1514' => 'vmu', 'VMungo1080G0169' => 'vmu', 'VMungo1127G1475' => 'vmu', 'VMungo1383G1208' => 'vmu', 'VMungo1383G1698' => 'vmu', 'Zm00001eb012270' => 'zma', 'Zm00001eb054100' => 'zma', 'Zm00001eb063350' => 'zma', 'Zm00001eb328560' => 'zma', 'Zm00001eb342820' => 'zma', 'Zm00001eb362210' => 'zma', 'Zm00001eb397730' => 'zma', 'Zm00001eb399750' => 'zma' ) $gf_id = 'HOM05D000959' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000959' ) $data_identifier = 'HOM05D000959' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 5, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 5, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 10, 'mbi' => (int) 3, 'mco' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 2, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 3, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 11, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399750' $species_info = array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ) $local_species = 'pco' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000959', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '622', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p07100' => 'bna', 'A03p11720' => 'bna', 'A05p08300' => 'bna', 'A05p13380' => 'bna', 'A09p54130' => 'bna', 'A10p16690' => 'bna', 'A10p16700' => 'bna', 'A10p33390' => 'bna', 'Aa31LG10G16020' => 'aar', 'Aa31LG1G11810' => 'aar', 'Aa31LG1G11830' => 'aar', 'Aa31LG1G22510' => 'aar', 'Aa31LG5G4890' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5793' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2310' => 'aag', 'Actinidia08499' => 'ach', 'Actinidia11262' => 'ach', 'Actinidia23926' => 'ach', 'Actinidia34420' => 'ach', 'Actinidia36970' => 'ach', 'Ah.02g111220' => 'amhyb', 'Ah.15g097750' => 'amhyb', 'AL4G27500' => 'aly', 'AL6G11470' => 'aly', 'AL8G35950' => 'aly', 'AL8G35960' => 'aly', 'AL8G35970' => 'aly', 'Aqoxy1G00912' => 'aox', 'Aqoxy2G02253' => 'aox', 'Aqoxy2G02411' => 'aox', 'Aqoxy5G00485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BZ66YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K8ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM4FUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6BF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HFV7XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25JBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0YNNV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MAKK6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P70IT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP2Z6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V61LZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YWP64R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3S9AI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7PGHH' => 'arhy', 'AT2G32150' => 'ath', 'AT3G62040' => 'ath', 'AT5G02230' => 'ath', 'AT5G59480' => 'ath', 'AT5G59490' => 'ath', 'ATR0332G060' => 'atr', 'ATR0559G190' => 'atr', 'ATR0693G294' => 'atr', 'Atru.chr3.3975' => 'acertr', 'Atru.chr3.3976' => 'acertr', 'Atru.chr3.3977' => 'acertr', 'Atru.chr4.2498' => 'acertr', 'Atru.chr5.838' => 'acertr', 'Atru.chr8.1990' => 'acertr', 'Atru.chr8.1991' => 'acertr', 'Atru.chr8.1992' => 'acertr', 'AUR62001759' => 'cqu', 'AUR62009545' => 'cqu', 'AUR62010474' => 'cqu', 'AUR62025820' => 'cqu', 'AUR62030422' => 'cqu', 'AUR62033605' => 'cqu', 'AUR62038615' => 'cqu', 'AUR62041347' => 'cqu', 'BcaB01g04574' => 'bca', 'BcaB02g09263' => 'bca', 'BcaB02g10453' => 'bca', 'BcaB05g22513' => 'bca', 'BcaB08g36253' => 'bca', 'BcaB08g36254' => 'bca', 'BcaC01g06519' => 'bca', 'BcaC02g11889' => 'bca', 'BcaC03g14010' => 'bca', 'BcaC03g18439' => 'bca', 'BcaC04g19765' => 'bca', 'BcaC09g48432' => 'bca', 'BcaNung07302' => 'bca', 'BolC2t06040H' => 'bol', 'BolC2t07346H' => 'bol', 'BolC3t13817H' => 'bol', 'BolC4t22625H' => 'bol', 'BolC4t23297H' => 'bol', 'BolC8t51278H' => 'bol', 'BolC9t58050H' => 'bol', 'BolC9t58051H' => 'bol', 'BolC9t60163H' => 'bol', 'BraA02t04712Z' => 'bra', 'BraA02t05791Z' => 'bra', 'BraA03t10483Z' => 'bra', 'BraA05t19795Z' => 'bra', 'BraA05t20276Z' => 'bra', 'BraA09t40827Z' => 'bra', 'BraA10t43750Z' => 'bra', 'BraA10t43751Z' => 'bra', 'BraA10t45370Z' => 'bra', 'C02p00400' => 'bna', 'C02p12460' => 'bna', 'C03p13680' => 'bna', 'C04p10270' => 'bna', 'C04p17500' => 'bna', 'C08p37010' => 'bna', 'C09p51880' => 'bna', 'C09p51890' => 'bna', 'C09p74300' => 'bna', 'CAN.G179.26' => 'can', 'CAN.G3384.1' => 'can', 'CAN.G394.68' => 'can', 'CAN.G907.13' => 'can', 'CANSAT11G0012' => 'cansat', 'CANSAT25G1586' => 'cansat', 'CANSAT35G0735' => 'cansat', 'CANSAT54G0556' => 'cansat', 'CANSAT64G0356' => 'cansat', 'CANSAT78G2042' => 'cansat', 'CARHR125920' => 'chi', 'CARHR131910' => 'chi', 'CARHR172390' => 'chi', 'CARHR211140' => 'chi', 'CARHR285850' => 'chi', 'CARHR285860' => 'chi', 'Carub.0004s1347' => 'cru', 'Carub.0004s1960' => 'cru', 'Carub.0005s2880' => 'cru', 'Carub.0006s0107' => 'cru', 'Carub.0008s2015' => 'cru', 'Carub.0008s2016' => 'cru', 'Carub.0008s2017' => 'cru', 'Ca_01315_v3' => 'car', 'Ca_05063_v3' => 'car', 'Ca_10231_v3' => 'car', 'Ca_10913_v3' => 'car', 'Ca_19156_v3' => 'car', 'Ca_23644_v3' => 'car', 'Ca_26735_v3' => 'car', 'Cc01_g13130' => 'ccan', 'Cc02_g21690' => 'ccan', 'Cc03_g03600' => 'ccan', 'Cc06_g02510' => 'ccan', 'CDE02G1265' => 'cde', 'CDE05G0415' => 'cde', 'CDE08G1082' => 'cde', 'Cfa005780' => 'cfa', 'Cfa011522' => 'cfa', 'Cfa011523' => 'cfa', 'Cfa015627' => 'cfa', 'Cfa017359' => 'cfa', 'Ciclev10005687m.g' => 'ccl', 'Ciclev10012173m.g' => 'ccl', 'Ciclev10021621m.g' => 'ccl', 'Ciclev10028968m.g' => 'ccl', 'Ciclev10029907m.g' => 'ccl', 'CiPaw.01G164800' => 'cil', 'CiPaw.07G083700' => 'cil', 'CiPaw.07G127000' => 'cil', 'CiPaw.07G136900' => 'cil', 'CiPaw.08G081700' => 'cil', 'CiPaw.09G194600' => 'cil', 'CiPaw.10G146500' => 'cil', 'CiPaw.13G091500' => 'cil', 'CiPaw.13G091600' => 'cil', 'ClCG00G003390' => 'cla', 'ClCG01G007220' => 'cla', 'ClCG03G001370' => 'cla', 'ClCG04G008100' => 'cla', 'ClCG06G006110' => 'cla', 'ClCG06G006130' => 'cla', 'ClCG10G021210' => 'cla', 'COL.COLO4_07648' => 'col', 'COL.COLO4_07650' => 'col', 'COL.COLO4_07651' => 'col', 'COL.COLO4_14780' => 'col', 'COL.COLO4_18546' => 'col', 'COL.COLO4_18547' => 'col', 'COL.COLO4_23103' => 'col', 'COL.COLO4_30419' => 'col', 'COL.COLO4_34232' => 'col', 'Cpa.g.sc169.20' => 'cpa', 'Cpa.g.sc57.45' => 'cpa', 'Cpa.g.sc58.124' => 'cpa', 'Cpa.g.sc58.125' => 'cpa', 'Cpa.g.sc81.118' => 'cpa', 'Cpa.g.sc81.119' => 'cpa', 'Cre12.g524700' => 'cre', 'CsaV3_1G034430' => 'csa', 'CsaV3_1G034440' => 'csa', 'CsaV3_1G034450' => 'csa', 'CsaV3_3G034830' => 'csa', 'CsaV3_4G025090' => 'csa', 'CsaV3_5G018660' => 'csa', 'CsaV3_6G038160' => 'csa', 'CSS0003447' => 'camsi', 'CSS0017840' => 'camsi', 'CSS0019260' => 'camsi', 'CSS0040375' => 'camsi', 'CSS0042533' => 'camsi', 'DCAR_005960' => 'dca', 'DCAR_012104' => 'dca', 'DCAR_012105' => 'dca', 'DCAR_012293' => 'dca', 'DCAR_015632' => 'dca', 'DCAR_024602' => 'dca', 'DCAR_028752' => 'dca', 'Dinv06261' => 'din', 'Dinv13982' => 'din', 'Dinv17029' => 'din', 'Dinv18463' => 'din', 'Dinv33181' => 'din', 'Dinv35585' => 'din', 'Dinv37161' => 'din', 'Dinv42977' => 'din', 'Dinv43122' => 'din', 'Dinv44517' => 'din', 'Duzib093G0256' => 'dzi', 'Duzib106G1254' => 'dzi', 'Duzib128G1789' => 'dzi', 'Duzib133G0633' => 'dzi', 'Duzib138G0510' => 'dzi', 'Duzib150G1084' => 'dzi', 'Duzib168G0488' => 'dzi', 'Duzib168G1523' => 'dzi', 'Duzib170G0133' => 'dzi', 'ECA234G1433' => 'eca', 'ECA236G1432' => 'eca', 'ECA236G2256' => 'eca', 'ECA236G2365' => 'eca', 'ECA236G4830' => 'eca', 'ECA248G1505' => 'eca', 'EL10Ac3g06431' => 'bvu', 'EL10Ac5g12577' => 'bvu', 'EL10Ac6g13533' => 'bvu', 'EL10Ac7g16045' => 'bvu', 'Eucgr.A01281' => 'egr', 'Eucgr.B02326' => 'egr', 'Eucgr.H03532' => 'egr', 'Eucgr.K00553' => 'egr', 'Eucgr.K03116' => 'egr', 'FAN02G3963' => 'fan', 'FAN05G0438' => 'fan', 'FAN09G2434' => 'fan', 'FAN12G3984' => 'fan', 'FAN14G0798' => 'fan', 'FAN17G0652' => 'fan', 'FAN19G1988' => 'fan', 'FAN22G0632' => 'fan', 'FAN23G0387' => 'fan', 'FAN26G1323' => 'fan', 'FAN28G0666' => 'fan', 'FvH4_1g26080' => 'fve', 'FvH4_3g36780' => 'fve', 'FvH4_4g15270' => 'fve', 'FvH4_6g13490' => 'fve', 'Glyma.01G098700' => 'gma', 'Glyma.03G065900' => 'gma', 'Glyma.03G073754' => 'gma', 'Glyma.03G073758' => 'gma', 'Glyma.03G083200' => 'gma', 'Glyma.03G225500' => 'gma', 'Glyma.05G037766' => 'gma', 'Glyma.07G133500' => 'gma', 'Glyma.10G139400' => 'gma', 'Glyma.10G248900' => 'gma', 'Glyma.11G137800' => 'gma', 'Glyma.12G061300' => 'gma', 'Glyma.13G337900' => 'gma', 'Glyma.15G036600' => 'gma', 'Glyma.18G182800' => 'gma', 'Glyma.19G222500' => 'gma', 'Glyma.20G144800' => 'gma', 'Gohir.A01G222000' => 'ghi', 'Gohir.A03G044000' => 'ghi', 'Gohir.A03G044100' => 'ghi', 'Gohir.A04G083100' => 'ghi', 'Gohir.A07G127200' => 'ghi', 'Gohir.A07G132400' => 'ghi', 'Gohir.A08G000700' => 'ghi', 'Gohir.A11G327300' => 'ghi', 'Gohir.D01G211500' => 'ghi', 'Gohir.D03G123400' => 'ghi', 'Gohir.D03G123500' => 'ghi', 'Gohir.D04G121800' => 'ghi', 'Gohir.D07G131500' => 'ghi', 'Gohir.D07G136600' => 'ghi', 'Gohir.D08G011600' => 'ghi', 'Gohir.D11G346200' => 'ghi', 'Gorai.001G142800' => 'gra', 'Gorai.001G148700' => 'gra', 'Gorai.002G257300' => 'gra', 'Gorai.003G130000' => 'gra', 'Gorai.003G130100' => 'gra', 'Gorai.004G005300' => 'gra', 'Gorai.007G376500' => 'gra', 'Gorai.012G104700' => 'gra', 'GSVIVG01017946001' => 'vvi', 'GSVIVG01024928001' => 'vvi', 'GSVIVG01028227001' => 'vvi', 'GSVIVG01034151001' => 'vvi', 'HanXRQChr05g0135031' => 'han', 'HanXRQChr05g0135041' => 'han', 'HanXRQChr05g0140021' => 'han', 'HanXRQChr06g0178981' => 'han', 'HanXRQChr07g0188251' => 'han', 'HanXRQChr08g0235311' => 'han', 'HanXRQChr09g0271011' => 'han', 'HanXRQChr10g0293321' => 'han', 'HanXRQChr13g0388171' => 'han', 'Haze_00916' => 'cav', 'Haze_05063' => 'cav', 'Haze_20814' => 'cav', 'Haze_24128' => 'cav', 'Hma1.2p1_0745F.1_g212010' => 'hma', 'Hma1.2p1_0757F.1_g213260' => 'hma', 'Hma1.2p1_0936F.1_g238840' => 'hma', 'Hma1.2p1_1735F.1_g299890' => 'hma', 'Hma1.2p1_1861F.1_g305685' => 'hma', 'HPP92_003397' => 'vpl', 'HPP92_012597' => 'vpl', 'HPP92_015520' => 'vpl', 'HPP92_015539' => 'vpl', 'HPP92_020373' => 'vpl', 'Hund04938' => 'sun', 'Hund10677' => 'sun', 'Hund11033' => 'sun', 'Hund12155' => 'sun', 'Lalb_Chr01g0022551' => 'lal', 'Lalb_Chr03g0042341' => 'lal', 'Lalb_Chr07g0192931' => 'lal', 'Lalb_Chr12g0209551' => 'lal', 'Lalb_Chr19g0125251' => 'lal', 'Lalb_Chr19g0137891' => 'lal', 'Lalb_Chr21g0304641' => 'lal', 'Lalb_Chr21g0309881' => 'lal', 'Lj1A5T12' => 'lonja', 'Lj1C148G10' => 'lonja', 'Lj2A93T83' => 'lonja', 'Lj3A738G68' => 'lonja', 'Lj3C966T1' => 'lonja', 'Lj3g0018958' => 'lja', 'Lj3g0021831' => 'lja', 'Lj3g0025443' => 'lja', 'Lj4g0026809' => 'lja', 'Lj5g0012558' => 'lja', 'Lj5g0021586' => 'lja', 'Lsat_1_v5_gn_5_156840' => 'lsa', 'Lsat_1_v5_gn_8_73460' => 'lsa', 'Lsat_1_v5_gn_8_73481' => 'lsa', 'Lsat_1_v5_gn_9_31601' => 'lsa', 'Lsat_1_v5_gn_9_77320' => 'lsa', 'Manes.01G171300' => 'mes', 'Manes.01G171400' => 'mes', 'Manes.01G236100' => 'mes', 'Manes.02G130500' => 'mes', 'Manes.02G130600' => 'mes', 'Manes.03G180200' => 'mes', 'Manes.05G007000' => 'mes', 'Manes.08G084400' => 'mes', 'Manes.09G092600' => 'mes', 'Manes.15G027900' => 'mes', 'MBI04_g40948_MAGBIO' => 'mbi', 'MBI14_g12123_MAGBIO' => 'mbi', 'MBI18_g28915_MAGBIO' => 'mbi', 'MCO09G053' => 'mco', 'MCO11G782' => 'mco', 'MCO15G215' => 'mco', 'MD03G1088500' => 'mdo', 'MD03G1088600' => 'mdo', 'MD04G1130800' => 'mdo', 'MD09G1291700' => 'mdo', 'MD11G1097500' => 'mdo', 'MD11G1097600' => 'mdo', 'MD12G1143900' => 'mdo', 'MD13G1191400' => 'mdo', 'MD16G1191500' => 'mdo', 'Medtr1g085570' => 'mtr', 'Medtr1g104610' => 'mtr', 'Medtr2g097520' => 'mtr', 'Medtr4g021800' => 'mtr', 'Medtr4g021825' => 'mtr', 'Medtr4g064270' => 'mtr', 'Medtr4g064380' => 'mtr', 'Medtr7g062150' => 'mtr', 'MELO3C003138.2' => 'cme', 'MELO3C005187.2' => 'cme', 'MELO3C009252.2' => 'cme', 'MELO3C014481.2' => 'cme', 'MELO3C020616.2' => 'cme', 'MELO3C020617.2' => 'cme', 'MELO3C020618.2' => 'cme', 'Migut.G00328' => 'egut', 'Migut.J00320' => 'egut', 'Migut.L01000' => 'egut', 'Migut.L01953' => 'egut', 'MSTRG.10253' => 'ama', 'MSTRG.19077' => 'ama', 'MSTRG.26780' => 'ama', 'MSTRG.4023' => 'ama', 'MSTRG.5655' => 'ama', 'MSTRG.9992' => 'ama', 'Nitab4.5_0000043g0310' => 'nta', 'Nitab4.5_0000463g0080' => 'nta', 'Nitab4.5_0000705g0170' => 'nta', 'Nitab4.5_0001326g0060' => 'nta', 'Nitab4.5_0001628g0030' => 'nta', 'Nitab4.5_0002103g0110' => 'nta', 'Nitab4.5_0002946g0030' => 'nta', 'Nitab4.5_0004639g0030' => 'nta', 'Nn2g11149' => 'nnu', 'Nn2g13389' => 'nnu', 'Nn4g25326' => 'nnu', 'Nn4g26290' => 'nnu', 'Nn5g29865' => 'nnu', 'Oeu004163.1' => 'oeu', 'Oeu006901.1' => 'oeu', 'Oeu010096.1' => 'oeu', 'Oeu024340.1' => 'oeu', 'Oeu048369.1' => 'oeu', 'Os01g0973000' => 'osa', 'Os03g0273800' => 'osa', 'Os03g0701200' => 'osa', 'Os03g0834050' => 'osa', 'Os07g0634400' => 'osa', 'Peaxi162Scf00092g01414' => 'pax', 'Peaxi162Scf00165g00818' => 'pax', 'Peaxi162Scf00309g00516' => 'pax', 'Peaxi162Scf00774g00218' => 'pax', 'PGR004G1824' => 'pgr', 'PGR004G2606' => 'pgr', 'PGR031G2716' => 'pgr', 'PGR102G2460' => 'pgr', 'PGR142G2599' => 'pgr', 'PGSC0003DMG400000843' => 'stu', 'PGSC0003DMG400008829' => 'stu', 'PGSC0003DMG400030418' => 'stu', 'PGSC0003DMG400031834' => 'stu', 'PGSC0003DMG401028300' => 'stu', 'PGSC0003DMG402028300' => 'stu', 'Phvul.001G219300' => 'pvu', 'Phvul.007G056000' => 'pvu', 'Phvul.007G208000' => 'pvu', 'Phvul.008G119500' => 'pvu', 'Phvul.010G011200' => 'pvu', 'Phvul.010G014800' => 'pvu', 'Phvul.011G062900' => 'pvu', 'Phvul.L007043' => 'pvu', 'Potri.001G242300' => 'ptr', 'Potri.002G185300' => 'ptr', 'Potri.006G086900' => 'ptr', 'Potri.008G151700' => 'ptr', 'Potri.009G033500' => 'ptr', 'Potri.010G089300' => 'ptr', 'Potri.014G110800' => 'ptr', 'Pp3c27_8130' => 'ppa', 'Pp3c6_27410' => 'ppa', 'PRCOL_00001659' => 'pco', 'PRCOL_00001927' => 'pco', 'PRCOL_00003649' => 'pco', 'Prupe.1G011600' => 'ppe', 'Prupe.3G000800' => 'ppe', 'Prupe.3G001100' => 'ppe', 'Prupe.6G072700' => 'ppe', 'Prupe.6G072800' => 'ppe', 'Prupe.6G257300' => 'ppe', 'Prupe.8G033000' => 'ppe', 'Psat0s2633g0080' => 'psa', 'Psat0s3396g0080' => 'psa', 'Psat0s3396g0200' => 'psa', 'Psat3g139080' => 'psa', 'Psat5g285080' => 'psa', 'Psat6g157760' => 'psa', 'Psat6g208440' => 'psa', 'Psat7g215320' => 'psa', 'Psat7g215400' => 'psa', 'Psat7g235600' => 'psa', 'Psat7g235760' => 'psa', 'PSO063G4603' => 'pso', 'PSO210G0182' => 'pso', 'PSO210G0196' => 'pso', 'PSO339G0394' => 'pso', 'PSO339G4127' => 'pso', 'PSO513G0064' => 'pso', 'PSO761G0079' => 'pso', 'QL01p031003' => 'qlo', 'QL01p031078' => 'qlo', 'QL06p003004' => 'qlo', 'QL07p048731' => 'qlo', 'QL09p037427' => 'qlo', 'RcHm_v2.0_Chr3g0466361' => 'rch', 'RcHm_v2.0_Chr3g0485571' => 'rch', 'RcHm_v2.0_Chr4g0416551' => 'rch', 'RcHm_v2.0_Chr5g0065831' => 'rch', 'Rhsim01G0230500' => 'rsi', 'Rhsim05G0194000' => 'rsi', 'Rhsim08G0250400' => 'rsi', 'Sabra02G0131000' => 'sbr', 'Sabra06G0066300' => 'sbr', 'Sabra08G0115500' => 'sbr', 'Sabra09G0023900' => 'sbr', 'Sabra10G0054000' => 'sbr', 'Sabra14G0081500' => 'sbr', 'Sabra16G0147100' => 'sbr', 'SalBow2G2957' => 'sbo', 'SalBow4G3320' => 'sbo', 'SalBow8G1894' => 'sbo', 'Sc07g0007950' => 'sci', 'Sc12g0001360' => 'sci', 'Sc13g0004330' => 'sci', 'Sc20g0005010' => 'sci', 'Sed0000361' => 'sed', 'Sed0001706' => 'sed', 'Sed0002422' => 'sed', 'Sed0004029' => 'sed', 'Sed0004602' => 'sed', 'Sed0004943' => 'sed', 'Sed0008646' => 'sed', 'Sed0023313' => 'sed', 'Sed0024843' => 'sed', 'SEGI_00081' => 'sgi', 'SEGI_00947' => 'sgi', 'SEGI_04046' => 'sgi', 'SEGI_06880' => 'sgi', 'SEGI_09736' => 'sgi', 'SEGI_12741' => 'sgi', 'SEGI_14530' => 'sgi', 'SEGI_20705' => 'sgi', 'SEGI_26088' => 'sgi', 'SEGI_28323' => 'sgi', 'SEGI_33343' => 'sgi', 'SGA_v2.0_scaffold126G33775' => 'sas', 'SGA_v2.0_scaffold2G01337' => 'sas', 'SGA_v2.0_scaffold38G15006' => 'sas', 'SGA_v2.0_scaffold39G15264' => 'sas', 'SGA_v2.0_scaffold453G51880' => 'sas', 'SHI12696' => 'shi', 'SMO367G1096' => 'smo', 'Solyc01g068630.3' => 'sly', 'Solyc05g011880.3' => 'sly', 'Solyc06g076300.3' => 'sly', 'Solyc09g010940.4' => 'sly', 'Solyc09g075890.3' => 'sly', 'Sopen01g030560' => 'spe', 'Sopen05g006630' => 'spe', 'Sopen06g032720' => 'spe', 'Sopen09g005660' => 'spe', 'Sopen09g030690' => 'spe', 'Sp4g14540' => 'spa', 'Sp4g20030' => 'spa', 'Sp5g01320' => 'spa', 'Sp6g21170' => 'spa', 'Sp6g21180' => 'spa', 'Sp6g21190' => 'spa', 'Sp6g40220' => 'spa', 'TAR362G0122' => 'tar', 'TAR362G1338' => 'tar', 'TAR369G0590' => 'tar', 'TAR371G0824' => 'tar', 'TAR622G1429' => 'tar', 'TAR623G0734' => 'tar', 'TAR625G0441' => 'tar', 'TAR629G0976' => 'tar', 'TAR633G1195' => 'tar', 'TAR636G2660' => 'tar', 'THA.LOC104799440' => 'tha', 'THA.LOC104800966' => 'tha', 'THA.LOC104806559' => 'tha', 'THA.LOC104810765' => 'tha', 'THA.LOC104816266' => 'tha', 'THA.LOC104817419' => 'tha', 'THA.LOC104827021' => 'tha', 'Thecc.01G327400' => 'tca', 'Thecc.04G229200' => 'tca', 'Thecc.05G037400' => 'tca', 'Thecc.09G318600' => 'tca', 'Thecc.09G318700' => 'tca', 'Thhalv10006238m.g' => 'esa', 'Thhalv10014321m.g' => 'esa', 'Thhalv10014335m.g' => 'esa', 'Thhalv10015826m.g' => 'esa', 'Thhalv10017107m.g' => 'esa', 'Thhalv10017180m.g' => 'esa', 'Thhalv10029339m.g' => 'esa', 'TPR.G1699' => 'tpr', 'TPR.G23609' => 'tpr', 'TPR.G3081' => 'tpr', 'TPR.G40397' => 'tpr', 'TPR.G5522' => 'tpr', 'TPR.G5618' => 'tpr', 'TPR.G5626' => 'tpr', 'TWI09G1632' => 'twi', 'TWI23G1230' => 'twi', 'TWI53G1064' => 'twi', 'TWI59G0751' => 'twi', 'TWI74G0947' => 'twi', 'TWI77G0337' => 'twi', 'TWI79G1254' => 'twi', 'unitig_0.g2341' => 'ugi', 'unitig_26.g10006' => 'ugi', 'unitig_26.g10008' => 'ugi', 'unitig_26.g9192' => 'ugi', 'vmacro14547' => 'vma', 'vmacro15333' => 'vma', 'vmacro18743' => 'vma', 'vmacro20166' => 'vma', 'VMungo0331G0523' => 'vmu', 'VMungo0331G1202' => 'vmu', 'VMungo0720G1228' => 'vmu', 'VMungo0720G1514' => 'vmu', 'VMungo1080G0169' => 'vmu', 'VMungo1127G1475' => 'vmu', 'VMungo1383G1208' => 'vmu', 'VMungo1383G1698' => 'vmu', 'Zm00001eb012270' => 'zma', 'Zm00001eb054100' => 'zma', 'Zm00001eb063350' => 'zma', 'Zm00001eb328560' => 'zma', 'Zm00001eb342820' => 'zma', 'Zm00001eb362210' => 'zma', 'Zm00001eb397730' => 'zma', 'Zm00001eb399750' => 'zma' ), 'gf_id' => 'HOM05D000959', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000959' ), 'data_identifier' => 'HOM05D000959', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000959', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '622', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p07100' => 'bna', 'A03p11720' => 'bna', 'A05p08300' => 'bna', 'A05p13380' => 'bna', 'A09p54130' => 'bna', 'A10p16690' => 'bna', 'A10p16700' => 'bna', 'A10p33390' => 'bna', 'Aa31LG10G16020' => 'aar', 'Aa31LG1G11810' => 'aar', 'Aa31LG1G11830' => 'aar', 'Aa31LG1G22510' => 'aar', 'Aa31LG5G4890' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5793' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2310' => 'aag', 'Actinidia08499' => 'ach', 'Actinidia11262' => 'ach', 'Actinidia23926' => 'ach', 'Actinidia34420' => 'ach', 'Actinidia36970' => 'ach', 'Ah.02g111220' => 'amhyb', 'Ah.15g097750' => 'amhyb', 'AL4G27500' => 'aly', 'AL6G11470' => 'aly', 'AL8G35950' => 'aly', 'AL8G35960' => 'aly', 'AL8G35970' => 'aly', 'Aqoxy1G00912' => 'aox', 'Aqoxy2G02253' => 'aox', 'Aqoxy2G02411' => 'aox', 'Aqoxy5G00485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BZ66YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K8ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM4FUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6BF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HFV7XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25JBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0YNNV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MAKK6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P70IT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP2Z6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V61LZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YWP64R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3S9AI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7PGHH' => 'arhy', 'AT2G32150' => 'ath', 'AT3G62040' => 'ath', 'AT5G02230' => 'ath', 'AT5G59480' => 'ath', 'AT5G59490' => 'ath', 'ATR0332G060' => 'atr', 'ATR0559G190' => 'atr', 'ATR0693G294' => 'atr', 'Atru.chr3.3975' => 'acertr', 'Atru.chr3.3976' => 'acertr', 'Atru.chr3.3977' => 'acertr', 'Atru.chr4.2498' => 'acertr', 'Atru.chr5.838' => 'acertr', 'Atru.chr8.1990' => 'acertr', 'Atru.chr8.1991' => 'acertr', 'Atru.chr8.1992' => 'acertr', 'AUR62001759' => 'cqu', 'AUR62009545' => 'cqu', 'AUR62010474' => 'cqu', 'AUR62025820' => 'cqu', 'AUR62030422' => 'cqu', 'AUR62033605' => 'cqu', 'AUR62038615' => 'cqu', 'AUR62041347' => 'cqu', 'BcaB01g04574' => 'bca', 'BcaB02g09263' => 'bca', 'BcaB02g10453' => 'bca', 'BcaB05g22513' => 'bca', 'BcaB08g36253' => 'bca', 'BcaB08g36254' => 'bca', 'BcaC01g06519' => 'bca', 'BcaC02g11889' => 'bca', 'BcaC03g14010' => 'bca', 'BcaC03g18439' => 'bca', 'BcaC04g19765' => 'bca', 'BcaC09g48432' => 'bca', 'BcaNung07302' => 'bca', 'BolC2t06040H' => 'bol', 'BolC2t07346H' => 'bol', 'BolC3t13817H' => 'bol', 'BolC4t22625H' => 'bol', 'BolC4t23297H' => 'bol', 'BolC8t51278H' => 'bol', 'BolC9t58050H' => 'bol', 'BolC9t58051H' => 'bol', 'BolC9t60163H' => 'bol', 'BraA02t04712Z' => 'bra', 'BraA02t05791Z' => 'bra', 'BraA03t10483Z' => 'bra', 'BraA05t19795Z' => 'bra', 'BraA05t20276Z' => 'bra', 'BraA09t40827Z' => 'bra', 'BraA10t43750Z' => 'bra', 'BraA10t43751Z' => 'bra', 'BraA10t45370Z' => 'bra', 'C02p00400' => 'bna', 'C02p12460' => 'bna', 'C03p13680' => 'bna', 'C04p10270' => 'bna', 'C04p17500' => 'bna', 'C08p37010' => 'bna', 'C09p51880' => 'bna', 'C09p51890' => 'bna', 'C09p74300' => 'bna', 'CAN.G179.26' => 'can', 'CAN.G3384.1' => 'can', 'CAN.G394.68' => 'can', 'CAN.G907.13' => 'can', 'CANSAT11G0012' => 'cansat', 'CANSAT25G1586' => 'cansat', 'CANSAT35G0735' => 'cansat', 'CANSAT54G0556' => 'cansat', 'CANSAT64G0356' => 'cansat', 'CANSAT78G2042' => 'cansat', 'CARHR125920' => 'chi', 'CARHR131910' => 'chi', 'CARHR172390' => 'chi', 'CARHR211140' => 'chi', 'CARHR285850' => 'chi', 'CARHR285860' => 'chi', 'Carub.0004s1347' => 'cru', 'Carub.0004s1960' => 'cru', 'Carub.0005s2880' => 'cru', 'Carub.0006s0107' => 'cru', 'Carub.0008s2015' => 'cru', 'Carub.0008s2016' => 'cru', 'Carub.0008s2017' => 'cru', 'Ca_01315_v3' => 'car', 'Ca_05063_v3' => 'car', 'Ca_10231_v3' => 'car', 'Ca_10913_v3' => 'car', 'Ca_19156_v3' => 'car', 'Ca_23644_v3' => 'car', 'Ca_26735_v3' => 'car', 'Cc01_g13130' => 'ccan', 'Cc02_g21690' => 'ccan', 'Cc03_g03600' => 'ccan', 'Cc06_g02510' => 'ccan', 'CDE02G1265' => 'cde', 'CDE05G0415' => 'cde', 'CDE08G1082' => 'cde', 'Cfa005780' => 'cfa', 'Cfa011522' => 'cfa', 'Cfa011523' => 'cfa', 'Cfa015627' => 'cfa', 'Cfa017359' => 'cfa', 'Ciclev10005687m.g' => 'ccl', 'Ciclev10012173m.g' => 'ccl', 'Ciclev10021621m.g' => 'ccl', 'Ciclev10028968m.g' => 'ccl', 'Ciclev10029907m.g' => 'ccl', 'CiPaw.01G164800' => 'cil', 'CiPaw.07G083700' => 'cil', 'CiPaw.07G127000' => 'cil', 'CiPaw.07G136900' => 'cil', 'CiPaw.08G081700' => 'cil', 'CiPaw.09G194600' => 'cil', 'CiPaw.10G146500' => 'cil', 'CiPaw.13G091500' => 'cil', 'CiPaw.13G091600' => 'cil', 'ClCG00G003390' => 'cla', 'ClCG01G007220' => 'cla', 'ClCG03G001370' => 'cla', 'ClCG04G008100' => 'cla', 'ClCG06G006110' => 'cla', 'ClCG06G006130' => 'cla', 'ClCG10G021210' => 'cla', 'COL.COLO4_07648' => 'col', 'COL.COLO4_07650' => 'col', 'COL.COLO4_07651' => 'col', 'COL.COLO4_14780' => 'col', 'COL.COLO4_18546' => 'col', 'COL.COLO4_18547' => 'col', 'COL.COLO4_23103' => 'col', 'COL.COLO4_30419' => 'col', 'COL.COLO4_34232' => 'col', 'Cpa.g.sc169.20' => 'cpa', 'Cpa.g.sc57.45' => 'cpa', 'Cpa.g.sc58.124' => 'cpa', 'Cpa.g.sc58.125' => 'cpa', 'Cpa.g.sc81.118' => 'cpa', 'Cpa.g.sc81.119' => 'cpa', 'Cre12.g524700' => 'cre', 'CsaV3_1G034430' => 'csa', 'CsaV3_1G034440' => 'csa', 'CsaV3_1G034450' => 'csa', 'CsaV3_3G034830' => 'csa', 'CsaV3_4G025090' => 'csa', 'CsaV3_5G018660' => 'csa', 'CsaV3_6G038160' => 'csa', 'CSS0003447' => 'camsi', 'CSS0017840' => 'camsi', 'CSS0019260' => 'camsi', 'CSS0040375' => 'camsi', 'CSS0042533' => 'camsi', 'DCAR_005960' => 'dca', 'DCAR_012104' => 'dca', 'DCAR_012105' => 'dca', 'DCAR_012293' => 'dca', 'DCAR_015632' => 'dca', 'DCAR_024602' => 'dca', 'DCAR_028752' => 'dca', 'Dinv06261' => 'din', 'Dinv13982' => 'din', 'Dinv17029' => 'din', 'Dinv18463' => 'din', 'Dinv33181' => 'din', 'Dinv35585' => 'din', 'Dinv37161' => 'din', 'Dinv42977' => 'din', 'Dinv43122' => 'din', 'Dinv44517' => 'din', 'Duzib093G0256' => 'dzi', 'Duzib106G1254' => 'dzi', 'Duzib128G1789' => 'dzi', 'Duzib133G0633' => 'dzi', 'Duzib138G0510' => 'dzi', 'Duzib150G1084' => 'dzi', 'Duzib168G0488' => 'dzi', 'Duzib168G1523' => 'dzi', 'Duzib170G0133' => 'dzi', 'ECA234G1433' => 'eca', 'ECA236G1432' => 'eca', 'ECA236G2256' => 'eca', 'ECA236G2365' => 'eca', 'ECA236G4830' => 'eca', 'ECA248G1505' => 'eca', 'EL10Ac3g06431' => 'bvu', 'EL10Ac5g12577' => 'bvu', 'EL10Ac6g13533' => 'bvu', 'EL10Ac7g16045' => 'bvu', 'Eucgr.A01281' => 'egr', 'Eucgr.B02326' => 'egr', 'Eucgr.H03532' => 'egr', 'Eucgr.K00553' => 'egr', 'Eucgr.K03116' => 'egr', 'FAN02G3963' => 'fan', 'FAN05G0438' => 'fan', 'FAN09G2434' => 'fan', 'FAN12G3984' => 'fan', 'FAN14G0798' => 'fan', 'FAN17G0652' => 'fan', 'FAN19G1988' => 'fan', 'FAN22G0632' => 'fan', 'FAN23G0387' => 'fan', 'FAN26G1323' => 'fan', 'FAN28G0666' => 'fan', 'FvH4_1g26080' => 'fve', 'FvH4_3g36780' => 'fve', 'FvH4_4g15270' => 'fve', 'FvH4_6g13490' => 'fve', 'Glyma.01G098700' => 'gma', 'Glyma.03G065900' => 'gma', 'Glyma.03G073754' => 'gma', 'Glyma.03G073758' => 'gma', 'Glyma.03G083200' => 'gma', 'Glyma.03G225500' => 'gma', 'Glyma.05G037766' => 'gma', 'Glyma.07G133500' => 'gma', 'Glyma.10G139400' => 'gma', 'Glyma.10G248900' => 'gma', 'Glyma.11G137800' => 'gma', 'Glyma.12G061300' => 'gma', 'Glyma.13G337900' => 'gma', 'Glyma.15G036600' => 'gma', 'Glyma.18G182800' => 'gma', 'Glyma.19G222500' => 'gma', 'Glyma.20G144800' => 'gma', 'Gohir.A01G222000' => 'ghi', 'Gohir.A03G044000' => 'ghi', 'Gohir.A03G044100' => 'ghi', 'Gohir.A04G083100' => 'ghi', 'Gohir.A07G127200' => 'ghi', 'Gohir.A07G132400' => 'ghi', 'Gohir.A08G000700' => 'ghi', 'Gohir.A11G327300' => 'ghi', 'Gohir.D01G211500' => 'ghi', 'Gohir.D03G123400' => 'ghi', 'Gohir.D03G123500' => 'ghi', 'Gohir.D04G121800' => 'ghi', 'Gohir.D07G131500' => 'ghi', 'Gohir.D07G136600' => 'ghi', 'Gohir.D08G011600' => 'ghi', 'Gohir.D11G346200' => 'ghi', 'Gorai.001G142800' => 'gra', 'Gorai.001G148700' => 'gra', 'Gorai.002G257300' => 'gra', 'Gorai.003G130000' => 'gra', 'Gorai.003G130100' => 'gra', 'Gorai.004G005300' => 'gra', 'Gorai.007G376500' => 'gra', 'Gorai.012G104700' => 'gra', 'GSVIVG01017946001' => 'vvi', 'GSVIVG01024928001' => 'vvi', 'GSVIVG01028227001' => 'vvi', 'GSVIVG01034151001' => 'vvi', 'HanXRQChr05g0135031' => 'han', 'HanXRQChr05g0135041' => 'han', 'HanXRQChr05g0140021' => 'han', 'HanXRQChr06g0178981' => 'han', 'HanXRQChr07g0188251' => 'han', 'HanXRQChr08g0235311' => 'han', 'HanXRQChr09g0271011' => 'han', 'HanXRQChr10g0293321' => 'han', 'HanXRQChr13g0388171' => 'han', 'Haze_00916' => 'cav', 'Haze_05063' => 'cav', 'Haze_20814' => 'cav', 'Haze_24128' => 'cav', 'Hma1.2p1_0745F.1_g212010' => 'hma', 'Hma1.2p1_0757F.1_g213260' => 'hma', 'Hma1.2p1_0936F.1_g238840' => 'hma', 'Hma1.2p1_1735F.1_g299890' => 'hma', 'Hma1.2p1_1861F.1_g305685' => 'hma', 'HPP92_003397' => 'vpl', 'HPP92_012597' => 'vpl', 'HPP92_015520' => 'vpl', 'HPP92_015539' => 'vpl', 'HPP92_020373' => 'vpl', 'Hund04938' => 'sun', 'Hund10677' => 'sun', 'Hund11033' => 'sun', 'Hund12155' => 'sun', 'Lalb_Chr01g0022551' => 'lal', 'Lalb_Chr03g0042341' => 'lal', 'Lalb_Chr07g0192931' => 'lal', 'Lalb_Chr12g0209551' => 'lal', 'Lalb_Chr19g0125251' => 'lal', 'Lalb_Chr19g0137891' => 'lal', 'Lalb_Chr21g0304641' => 'lal', 'Lalb_Chr21g0309881' => 'lal', 'Lj1A5T12' => 'lonja', 'Lj1C148G10' => 'lonja', 'Lj2A93T83' => 'lonja', 'Lj3A738G68' => 'lonja', 'Lj3C966T1' => 'lonja', 'Lj3g0018958' => 'lja', 'Lj3g0021831' => 'lja', 'Lj3g0025443' => 'lja', 'Lj4g0026809' => 'lja', 'Lj5g0012558' => 'lja', 'Lj5g0021586' => 'lja', 'Lsat_1_v5_gn_5_156840' => 'lsa', 'Lsat_1_v5_gn_8_73460' => 'lsa', 'Lsat_1_v5_gn_8_73481' => 'lsa', 'Lsat_1_v5_gn_9_31601' => 'lsa', 'Lsat_1_v5_gn_9_77320' => 'lsa', 'Manes.01G171300' => 'mes', 'Manes.01G171400' => 'mes', 'Manes.01G236100' => 'mes', 'Manes.02G130500' => 'mes', 'Manes.02G130600' => 'mes', 'Manes.03G180200' => 'mes', 'Manes.05G007000' => 'mes', 'Manes.08G084400' => 'mes', 'Manes.09G092600' => 'mes', 'Manes.15G027900' => 'mes', 'MBI04_g40948_MAGBIO' => 'mbi', 'MBI14_g12123_MAGBIO' => 'mbi', 'MBI18_g28915_MAGBIO' => 'mbi', 'MCO09G053' => 'mco', 'MCO11G782' => 'mco', 'MCO15G215' => 'mco', 'MD03G1088500' => 'mdo', 'MD03G1088600' => 'mdo', 'MD04G1130800' => 'mdo', 'MD09G1291700' => 'mdo', 'MD11G1097500' => 'mdo', 'MD11G1097600' => 'mdo', 'MD12G1143900' => 'mdo', 'MD13G1191400' => 'mdo', 'MD16G1191500' => 'mdo', 'Medtr1g085570' => 'mtr', 'Medtr1g104610' => 'mtr', 'Medtr2g097520' => 'mtr', 'Medtr4g021800' => 'mtr', 'Medtr4g021825' => 'mtr', 'Medtr4g064270' => 'mtr', 'Medtr4g064380' => 'mtr', 'Medtr7g062150' => 'mtr', 'MELO3C003138.2' => 'cme', 'MELO3C005187.2' => 'cme', 'MELO3C009252.2' => 'cme', 'MELO3C014481.2' => 'cme', 'MELO3C020616.2' => 'cme', 'MELO3C020617.2' => 'cme', 'MELO3C020618.2' => 'cme', 'Migut.G00328' => 'egut', 'Migut.J00320' => 'egut', 'Migut.L01000' => 'egut', 'Migut.L01953' => 'egut', 'MSTRG.10253' => 'ama', 'MSTRG.19077' => 'ama', 'MSTRG.26780' => 'ama', 'MSTRG.4023' => 'ama', 'MSTRG.5655' => 'ama', 'MSTRG.9992' => 'ama', 'Nitab4.5_0000043g0310' => 'nta', 'Nitab4.5_0000463g0080' => 'nta', 'Nitab4.5_0000705g0170' => 'nta', 'Nitab4.5_0001326g0060' => 'nta', 'Nitab4.5_0001628g0030' => 'nta', 'Nitab4.5_0002103g0110' => 'nta', 'Nitab4.5_0002946g0030' => 'nta', 'Nitab4.5_0004639g0030' => 'nta', 'Nn2g11149' => 'nnu', 'Nn2g13389' => 'nnu', 'Nn4g25326' => 'nnu', 'Nn4g26290' => 'nnu', 'Nn5g29865' => 'nnu', 'Oeu004163.1' => 'oeu', 'Oeu006901.1' => 'oeu', 'Oeu010096.1' => 'oeu', 'Oeu024340.1' => 'oeu', 'Oeu048369.1' => 'oeu', 'Os01g0973000' => 'osa', 'Os03g0273800' => 'osa', 'Os03g0701200' => 'osa', 'Os03g0834050' => 'osa', 'Os07g0634400' => 'osa', 'Peaxi162Scf00092g01414' => 'pax', 'Peaxi162Scf00165g00818' => 'pax', 'Peaxi162Scf00309g00516' => 'pax', 'Peaxi162Scf00774g00218' => 'pax', 'PGR004G1824' => 'pgr', 'PGR004G2606' => 'pgr', 'PGR031G2716' => 'pgr', 'PGR102G2460' => 'pgr', 'PGR142G2599' => 'pgr', 'PGSC0003DMG400000843' => 'stu', 'PGSC0003DMG400008829' => 'stu', 'PGSC0003DMG400030418' => 'stu', 'PGSC0003DMG400031834' => 'stu', 'PGSC0003DMG401028300' => 'stu', 'PGSC0003DMG402028300' => 'stu', 'Phvul.001G219300' => 'pvu', 'Phvul.007G056000' => 'pvu', 'Phvul.007G208000' => 'pvu', 'Phvul.008G119500' => 'pvu', 'Phvul.010G011200' => 'pvu', 'Phvul.010G014800' => 'pvu', 'Phvul.011G062900' => 'pvu', 'Phvul.L007043' => 'pvu', 'Potri.001G242300' => 'ptr', 'Potri.002G185300' => 'ptr', 'Potri.006G086900' => 'ptr', 'Potri.008G151700' => 'ptr', 'Potri.009G033500' => 'ptr', 'Potri.010G089300' => 'ptr', 'Potri.014G110800' => 'ptr', 'Pp3c27_8130' => 'ppa', 'Pp3c6_27410' => 'ppa', 'PRCOL_00001659' => 'pco', 'PRCOL_00001927' => 'pco', 'PRCOL_00003649' => 'pco', 'Prupe.1G011600' => 'ppe', 'Prupe.3G000800' => 'ppe', 'Prupe.3G001100' => 'ppe', 'Prupe.6G072700' => 'ppe', 'Prupe.6G072800' => 'ppe', 'Prupe.6G257300' => 'ppe', 'Prupe.8G033000' => 'ppe', 'Psat0s2633g0080' => 'psa', 'Psat0s3396g0080' => 'psa', 'Psat0s3396g0200' => 'psa', 'Psat3g139080' => 'psa', 'Psat5g285080' => 'psa', 'Psat6g157760' => 'psa', 'Psat6g208440' => 'psa', 'Psat7g215320' => 'psa', 'Psat7g215400' => 'psa', 'Psat7g235600' => 'psa', 'Psat7g235760' => 'psa', 'PSO063G4603' => 'pso', 'PSO210G0182' => 'pso', 'PSO210G0196' => 'pso', 'PSO339G0394' => 'pso', 'PSO339G4127' => 'pso', 'PSO513G0064' => 'pso', 'PSO761G0079' => 'pso', 'QL01p031003' => 'qlo', 'QL01p031078' => 'qlo', 'QL06p003004' => 'qlo', 'QL07p048731' => 'qlo', 'QL09p037427' => 'qlo', 'RcHm_v2.0_Chr3g0466361' => 'rch', 'RcHm_v2.0_Chr3g0485571' => 'rch', 'RcHm_v2.0_Chr4g0416551' => 'rch', 'RcHm_v2.0_Chr5g0065831' => 'rch', 'Rhsim01G0230500' => 'rsi', 'Rhsim05G0194000' => 'rsi', 'Rhsim08G0250400' => 'rsi', 'Sabra02G0131000' => 'sbr', 'Sabra06G0066300' => 'sbr', 'Sabra08G0115500' => 'sbr', 'Sabra09G0023900' => 'sbr', 'Sabra10G0054000' => 'sbr', 'Sabra14G0081500' => 'sbr', 'Sabra16G0147100' => 'sbr', 'SalBow2G2957' => 'sbo', 'SalBow4G3320' => 'sbo', 'SalBow8G1894' => 'sbo', 'Sc07g0007950' => 'sci', 'Sc12g0001360' => 'sci', 'Sc13g0004330' => 'sci', 'Sc20g0005010' => 'sci', 'Sed0000361' => 'sed', 'Sed0001706' => 'sed', 'Sed0002422' => 'sed', 'Sed0004029' => 'sed', 'Sed0004602' => 'sed', 'Sed0004943' => 'sed', 'Sed0008646' => 'sed', 'Sed0023313' => 'sed', 'Sed0024843' => 'sed', 'SEGI_00081' => 'sgi', 'SEGI_00947' => 'sgi', 'SEGI_04046' => 'sgi', 'SEGI_06880' => 'sgi', 'SEGI_09736' => 'sgi', 'SEGI_12741' => 'sgi', 'SEGI_14530' => 'sgi', 'SEGI_20705' => 'sgi', 'SEGI_26088' => 'sgi', 'SEGI_28323' => 'sgi', 'SEGI_33343' => 'sgi', 'SGA_v2.0_scaffold126G33775' => 'sas', 'SGA_v2.0_scaffold2G01337' => 'sas', 'SGA_v2.0_scaffold38G15006' => 'sas', 'SGA_v2.0_scaffold39G15264' => 'sas', 'SGA_v2.0_scaffold453G51880' => 'sas', 'SHI12696' => 'shi', 'SMO367G1096' => 'smo', 'Solyc01g068630.3' => 'sly', 'Solyc05g011880.3' => 'sly', 'Solyc06g076300.3' => 'sly', 'Solyc09g010940.4' => 'sly', 'Solyc09g075890.3' => 'sly', 'Sopen01g030560' => 'spe', 'Sopen05g006630' => 'spe', 'Sopen06g032720' => 'spe', 'Sopen09g005660' => 'spe', 'Sopen09g030690' => 'spe', 'Sp4g14540' => 'spa', 'Sp4g20030' => 'spa', 'Sp5g01320' => 'spa', 'Sp6g21170' => 'spa', 'Sp6g21180' => 'spa', 'Sp6g21190' => 'spa', 'Sp6g40220' => 'spa', 'TAR362G0122' => 'tar', 'TAR362G1338' => 'tar', 'TAR369G0590' => 'tar', 'TAR371G0824' => 'tar', 'TAR622G1429' => 'tar', 'TAR623G0734' => 'tar', 'TAR625G0441' => 'tar', 'TAR629G0976' => 'tar', 'TAR633G1195' => 'tar', 'TAR636G2660' => 'tar', 'THA.LOC104799440' => 'tha', 'THA.LOC104800966' => 'tha', 'THA.LOC104806559' => 'tha', 'THA.LOC104810765' => 'tha', 'THA.LOC104816266' => 'tha', 'THA.LOC104817419' => 'tha', 'THA.LOC104827021' => 'tha', 'Thecc.01G327400' => 'tca', 'Thecc.04G229200' => 'tca', 'Thecc.05G037400' => 'tca', 'Thecc.09G318600' => 'tca', 'Thecc.09G318700' => 'tca', 'Thhalv10006238m.g' => 'esa', 'Thhalv10014321m.g' => 'esa', 'Thhalv10014335m.g' => 'esa', 'Thhalv10015826m.g' => 'esa', 'Thhalv10017107m.g' => 'esa', 'Thhalv10017180m.g' => 'esa', 'Thhalv10029339m.g' => 'esa', 'TPR.G1699' => 'tpr', 'TPR.G23609' => 'tpr', 'TPR.G3081' => 'tpr', 'TPR.G40397' => 'tpr', 'TPR.G5522' => 'tpr', 'TPR.G5618' => 'tpr', 'TPR.G5626' => 'tpr', 'TWI09G1632' => 'twi', 'TWI23G1230' => 'twi', 'TWI53G1064' => 'twi', 'TWI59G0751' => 'twi', 'TWI74G0947' => 'twi', 'TWI77G0337' => 'twi', 'TWI79G1254' => 'twi', 'unitig_0.g2341' => 'ugi', 'unitig_26.g10006' => 'ugi', 'unitig_26.g10008' => 'ugi', 'unitig_26.g9192' => 'ugi', 'vmacro14547' => 'vma', 'vmacro15333' => 'vma', 'vmacro18743' => 'vma', 'vmacro20166' => 'vma', 'VMungo0331G0523' => 'vmu', 'VMungo0331G1202' => 'vmu', 'VMungo0720G1228' => 'vmu', 'VMungo0720G1514' => 'vmu', 'VMungo1080G0169' => 'vmu', 'VMungo1127G1475' => 'vmu', 'VMungo1383G1208' => 'vmu', 'VMungo1383G1698' => 'vmu', 'Zm00001eb012270' => 'zma', 'Zm00001eb054100' => 'zma', 'Zm00001eb063350' => 'zma', 'Zm00001eb328560' => 'zma', 'Zm00001eb342820' => 'zma', 'Zm00001eb362210' => 'zma', 'Zm00001eb397730' => 'zma', 'Zm00001eb399750' => 'zma' ) $gf_id = 'HOM05D000959' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000959' ) $data_identifier = 'HOM05D000959' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 5, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 5, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 10, 'mbi' => (int) 3, 'mco' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 2, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 3, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 11, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399750' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000959', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '622', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p07100' => 'bna', 'A03p11720' => 'bna', 'A05p08300' => 'bna', 'A05p13380' => 'bna', 'A09p54130' => 'bna', 'A10p16690' => 'bna', 'A10p16700' => 'bna', 'A10p33390' => 'bna', 'Aa31LG10G16020' => 'aar', 'Aa31LG1G11810' => 'aar', 'Aa31LG1G11830' => 'aar', 'Aa31LG1G22510' => 'aar', 'Aa31LG5G4890' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5793' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2310' => 'aag', 'Actinidia08499' => 'ach', 'Actinidia11262' => 'ach', 'Actinidia23926' => 'ach', 'Actinidia34420' => 'ach', 'Actinidia36970' => 'ach', 'Ah.02g111220' => 'amhyb', 'Ah.15g097750' => 'amhyb', 'AL4G27500' => 'aly', 'AL6G11470' => 'aly', 'AL8G35950' => 'aly', 'AL8G35960' => 'aly', 'AL8G35970' => 'aly', 'Aqoxy1G00912' => 'aox', 'Aqoxy2G02253' => 'aox', 'Aqoxy2G02411' => 'aox', 'Aqoxy5G00485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BZ66YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K8ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM4FUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6BF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HFV7XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25JBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0YNNV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MAKK6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P70IT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP2Z6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V61LZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YWP64R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3S9AI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7PGHH' => 'arhy', 'AT2G32150' => 'ath', 'AT3G62040' => 'ath', 'AT5G02230' => 'ath', 'AT5G59480' => 'ath', 'AT5G59490' => 'ath', 'ATR0332G060' => 'atr', 'ATR0559G190' => 'atr', 'ATR0693G294' => 'atr', 'Atru.chr3.3975' => 'acertr', 'Atru.chr3.3976' => 'acertr', 'Atru.chr3.3977' => 'acertr', 'Atru.chr4.2498' => 'acertr', 'Atru.chr5.838' => 'acertr', 'Atru.chr8.1990' => 'acertr', 'Atru.chr8.1991' => 'acertr', 'Atru.chr8.1992' => 'acertr', 'AUR62001759' => 'cqu', 'AUR62009545' => 'cqu', 'AUR62010474' => 'cqu', 'AUR62025820' => 'cqu', 'AUR62030422' => 'cqu', 'AUR62033605' => 'cqu', 'AUR62038615' => 'cqu', 'AUR62041347' => 'cqu', 'BcaB01g04574' => 'bca', 'BcaB02g09263' => 'bca', 'BcaB02g10453' => 'bca', 'BcaB05g22513' => 'bca', 'BcaB08g36253' => 'bca', 'BcaB08g36254' => 'bca', 'BcaC01g06519' => 'bca', 'BcaC02g11889' => 'bca', 'BcaC03g14010' => 'bca', 'BcaC03g18439' => 'bca', 'BcaC04g19765' => 'bca', 'BcaC09g48432' => 'bca', 'BcaNung07302' => 'bca', 'BolC2t06040H' => 'bol', 'BolC2t07346H' => 'bol', 'BolC3t13817H' => 'bol', 'BolC4t22625H' => 'bol', 'BolC4t23297H' => 'bol', 'BolC8t51278H' => 'bol', 'BolC9t58050H' => 'bol', 'BolC9t58051H' => 'bol', 'BolC9t60163H' => 'bol', 'BraA02t04712Z' => 'bra', 'BraA02t05791Z' => 'bra', 'BraA03t10483Z' => 'bra', 'BraA05t19795Z' => 'bra', 'BraA05t20276Z' => 'bra', 'BraA09t40827Z' => 'bra', 'BraA10t43750Z' => 'bra', 'BraA10t43751Z' => 'bra', 'BraA10t45370Z' => 'bra', 'C02p00400' => 'bna', 'C02p12460' => 'bna', 'C03p13680' => 'bna', 'C04p10270' => 'bna', 'C04p17500' => 'bna', 'C08p37010' => 'bna', 'C09p51880' => 'bna', 'C09p51890' => 'bna', 'C09p74300' => 'bna', 'CAN.G179.26' => 'can', 'CAN.G3384.1' => 'can', 'CAN.G394.68' => 'can', 'CAN.G907.13' => 'can', 'CANSAT11G0012' => 'cansat', 'CANSAT25G1586' => 'cansat', 'CANSAT35G0735' => 'cansat', 'CANSAT54G0556' => 'cansat', 'CANSAT64G0356' => 'cansat', 'CANSAT78G2042' => 'cansat', 'CARHR125920' => 'chi', 'CARHR131910' => 'chi', 'CARHR172390' => 'chi', 'CARHR211140' => 'chi', 'CARHR285850' => 'chi', 'CARHR285860' => 'chi', 'Carub.0004s1347' => 'cru', 'Carub.0004s1960' => 'cru', 'Carub.0005s2880' => 'cru', 'Carub.0006s0107' => 'cru', 'Carub.0008s2015' => 'cru', 'Carub.0008s2016' => 'cru', 'Carub.0008s2017' => 'cru', 'Ca_01315_v3' => 'car', 'Ca_05063_v3' => 'car', 'Ca_10231_v3' => 'car', 'Ca_10913_v3' => 'car', 'Ca_19156_v3' => 'car', 'Ca_23644_v3' => 'car', 'Ca_26735_v3' => 'car', 'Cc01_g13130' => 'ccan', 'Cc02_g21690' => 'ccan', 'Cc03_g03600' => 'ccan', 'Cc06_g02510' => 'ccan', 'CDE02G1265' => 'cde', 'CDE05G0415' => 'cde', 'CDE08G1082' => 'cde', 'Cfa005780' => 'cfa', 'Cfa011522' => 'cfa', 'Cfa011523' => 'cfa', 'Cfa015627' => 'cfa', 'Cfa017359' => 'cfa', 'Ciclev10005687m.g' => 'ccl', 'Ciclev10012173m.g' => 'ccl', 'Ciclev10021621m.g' => 'ccl', 'Ciclev10028968m.g' => 'ccl', 'Ciclev10029907m.g' => 'ccl', 'CiPaw.01G164800' => 'cil', 'CiPaw.07G083700' => 'cil', 'CiPaw.07G127000' => 'cil', 'CiPaw.07G136900' => 'cil', 'CiPaw.08G081700' => 'cil', 'CiPaw.09G194600' => 'cil', 'CiPaw.10G146500' => 'cil', 'CiPaw.13G091500' => 'cil', 'CiPaw.13G091600' => 'cil', 'ClCG00G003390' => 'cla', 'ClCG01G007220' => 'cla', 'ClCG03G001370' => 'cla', 'ClCG04G008100' => 'cla', 'ClCG06G006110' => 'cla', 'ClCG06G006130' => 'cla', 'ClCG10G021210' => 'cla', 'COL.COLO4_07648' => 'col', 'COL.COLO4_07650' => 'col', 'COL.COLO4_07651' => 'col', 'COL.COLO4_14780' => 'col', 'COL.COLO4_18546' => 'col', 'COL.COLO4_18547' => 'col', 'COL.COLO4_23103' => 'col', 'COL.COLO4_30419' => 'col', 'COL.COLO4_34232' => 'col', 'Cpa.g.sc169.20' => 'cpa', 'Cpa.g.sc57.45' => 'cpa', 'Cpa.g.sc58.124' => 'cpa', 'Cpa.g.sc58.125' => 'cpa', 'Cpa.g.sc81.118' => 'cpa', 'Cpa.g.sc81.119' => 'cpa', 'Cre12.g524700' => 'cre', 'CsaV3_1G034430' => 'csa', 'CsaV3_1G034440' => 'csa', 'CsaV3_1G034450' => 'csa', 'CsaV3_3G034830' => 'csa', 'CsaV3_4G025090' => 'csa', 'CsaV3_5G018660' => 'csa', 'CsaV3_6G038160' => 'csa', 'CSS0003447' => 'camsi', 'CSS0017840' => 'camsi', 'CSS0019260' => 'camsi', 'CSS0040375' => 'camsi', 'CSS0042533' => 'camsi', 'DCAR_005960' => 'dca', 'DCAR_012104' => 'dca', 'DCAR_012105' => 'dca', 'DCAR_012293' => 'dca', 'DCAR_015632' => 'dca', 'DCAR_024602' => 'dca', 'DCAR_028752' => 'dca', 'Dinv06261' => 'din', 'Dinv13982' => 'din', 'Dinv17029' => 'din', 'Dinv18463' => 'din', 'Dinv33181' => 'din', 'Dinv35585' => 'din', 'Dinv37161' => 'din', 'Dinv42977' => 'din', 'Dinv43122' => 'din', 'Dinv44517' => 'din', 'Duzib093G0256' => 'dzi', 'Duzib106G1254' => 'dzi', 'Duzib128G1789' => 'dzi', 'Duzib133G0633' => 'dzi', 'Duzib138G0510' => 'dzi', 'Duzib150G1084' => 'dzi', 'Duzib168G0488' => 'dzi', 'Duzib168G1523' => 'dzi', 'Duzib170G0133' => 'dzi', 'ECA234G1433' => 'eca', 'ECA236G1432' => 'eca', 'ECA236G2256' => 'eca', 'ECA236G2365' => 'eca', 'ECA236G4830' => 'eca', 'ECA248G1505' => 'eca', 'EL10Ac3g06431' => 'bvu', 'EL10Ac5g12577' => 'bvu', 'EL10Ac6g13533' => 'bvu', 'EL10Ac7g16045' => 'bvu', 'Eucgr.A01281' => 'egr', 'Eucgr.B02326' => 'egr', 'Eucgr.H03532' => 'egr', 'Eucgr.K00553' => 'egr', 'Eucgr.K03116' => 'egr', 'FAN02G3963' => 'fan', 'FAN05G0438' => 'fan', 'FAN09G2434' => 'fan', 'FAN12G3984' => 'fan', 'FAN14G0798' => 'fan', 'FAN17G0652' => 'fan', 'FAN19G1988' => 'fan', 'FAN22G0632' => 'fan', 'FAN23G0387' => 'fan', 'FAN26G1323' => 'fan', 'FAN28G0666' => 'fan', 'FvH4_1g26080' => 'fve', 'FvH4_3g36780' => 'fve', 'FvH4_4g15270' => 'fve', 'FvH4_6g13490' => 'fve', 'Glyma.01G098700' => 'gma', 'Glyma.03G065900' => 'gma', 'Glyma.03G073754' => 'gma', 'Glyma.03G073758' => 'gma', 'Glyma.03G083200' => 'gma', 'Glyma.03G225500' => 'gma', 'Glyma.05G037766' => 'gma', 'Glyma.07G133500' => 'gma', 'Glyma.10G139400' => 'gma', 'Glyma.10G248900' => 'gma', 'Glyma.11G137800' => 'gma', 'Glyma.12G061300' => 'gma', 'Glyma.13G337900' => 'gma', 'Glyma.15G036600' => 'gma', 'Glyma.18G182800' => 'gma', 'Glyma.19G222500' => 'gma', 'Glyma.20G144800' => 'gma', 'Gohir.A01G222000' => 'ghi', 'Gohir.A03G044000' => 'ghi', 'Gohir.A03G044100' => 'ghi', 'Gohir.A04G083100' => 'ghi', 'Gohir.A07G127200' => 'ghi', 'Gohir.A07G132400' => 'ghi', 'Gohir.A08G000700' => 'ghi', 'Gohir.A11G327300' => 'ghi', 'Gohir.D01G211500' => 'ghi', 'Gohir.D03G123400' => 'ghi', 'Gohir.D03G123500' => 'ghi', 'Gohir.D04G121800' => 'ghi', 'Gohir.D07G131500' => 'ghi', 'Gohir.D07G136600' => 'ghi', 'Gohir.D08G011600' => 'ghi', 'Gohir.D11G346200' => 'ghi', 'Gorai.001G142800' => 'gra', 'Gorai.001G148700' => 'gra', 'Gorai.002G257300' => 'gra', 'Gorai.003G130000' => 'gra', 'Gorai.003G130100' => 'gra', 'Gorai.004G005300' => 'gra', 'Gorai.007G376500' => 'gra', 'Gorai.012G104700' => 'gra', 'GSVIVG01017946001' => 'vvi', 'GSVIVG01024928001' => 'vvi', 'GSVIVG01028227001' => 'vvi', 'GSVIVG01034151001' => 'vvi', 'HanXRQChr05g0135031' => 'han', 'HanXRQChr05g0135041' => 'han', 'HanXRQChr05g0140021' => 'han', 'HanXRQChr06g0178981' => 'han', 'HanXRQChr07g0188251' => 'han', 'HanXRQChr08g0235311' => 'han', 'HanXRQChr09g0271011' => 'han', 'HanXRQChr10g0293321' => 'han', 'HanXRQChr13g0388171' => 'han', 'Haze_00916' => 'cav', 'Haze_05063' => 'cav', 'Haze_20814' => 'cav', 'Haze_24128' => 'cav', 'Hma1.2p1_0745F.1_g212010' => 'hma', 'Hma1.2p1_0757F.1_g213260' => 'hma', 'Hma1.2p1_0936F.1_g238840' => 'hma', 'Hma1.2p1_1735F.1_g299890' => 'hma', 'Hma1.2p1_1861F.1_g305685' => 'hma', 'HPP92_003397' => 'vpl', 'HPP92_012597' => 'vpl', 'HPP92_015520' => 'vpl', 'HPP92_015539' => 'vpl', 'HPP92_020373' => 'vpl', 'Hund04938' => 'sun', 'Hund10677' => 'sun', 'Hund11033' => 'sun', 'Hund12155' => 'sun', 'Lalb_Chr01g0022551' => 'lal', 'Lalb_Chr03g0042341' => 'lal', 'Lalb_Chr07g0192931' => 'lal', 'Lalb_Chr12g0209551' => 'lal', 'Lalb_Chr19g0125251' => 'lal', 'Lalb_Chr19g0137891' => 'lal', 'Lalb_Chr21g0304641' => 'lal', 'Lalb_Chr21g0309881' => 'lal', 'Lj1A5T12' => 'lonja', 'Lj1C148G10' => 'lonja', 'Lj2A93T83' => 'lonja', 'Lj3A738G68' => 'lonja', 'Lj3C966T1' => 'lonja', 'Lj3g0018958' => 'lja', 'Lj3g0021831' => 'lja', 'Lj3g0025443' => 'lja', 'Lj4g0026809' => 'lja', 'Lj5g0012558' => 'lja', 'Lj5g0021586' => 'lja', 'Lsat_1_v5_gn_5_156840' => 'lsa', 'Lsat_1_v5_gn_8_73460' => 'lsa', 'Lsat_1_v5_gn_8_73481' => 'lsa', 'Lsat_1_v5_gn_9_31601' => 'lsa', 'Lsat_1_v5_gn_9_77320' => 'lsa', 'Manes.01G171300' => 'mes', 'Manes.01G171400' => 'mes', 'Manes.01G236100' => 'mes', 'Manes.02G130500' => 'mes', 'Manes.02G130600' => 'mes', 'Manes.03G180200' => 'mes', 'Manes.05G007000' => 'mes', 'Manes.08G084400' => 'mes', 'Manes.09G092600' => 'mes', 'Manes.15G027900' => 'mes', 'MBI04_g40948_MAGBIO' => 'mbi', 'MBI14_g12123_MAGBIO' => 'mbi', 'MBI18_g28915_MAGBIO' => 'mbi', 'MCO09G053' => 'mco', 'MCO11G782' => 'mco', 'MCO15G215' => 'mco', 'MD03G1088500' => 'mdo', 'MD03G1088600' => 'mdo', 'MD04G1130800' => 'mdo', 'MD09G1291700' => 'mdo', 'MD11G1097500' => 'mdo', 'MD11G1097600' => 'mdo', 'MD12G1143900' => 'mdo', 'MD13G1191400' => 'mdo', 'MD16G1191500' => 'mdo', 'Medtr1g085570' => 'mtr', 'Medtr1g104610' => 'mtr', 'Medtr2g097520' => 'mtr', 'Medtr4g021800' => 'mtr', 'Medtr4g021825' => 'mtr', 'Medtr4g064270' => 'mtr', 'Medtr4g064380' => 'mtr', 'Medtr7g062150' => 'mtr', 'MELO3C003138.2' => 'cme', 'MELO3C005187.2' => 'cme', 'MELO3C009252.2' => 'cme', 'MELO3C014481.2' => 'cme', 'MELO3C020616.2' => 'cme', 'MELO3C020617.2' => 'cme', 'MELO3C020618.2' => 'cme', 'Migut.G00328' => 'egut', 'Migut.J00320' => 'egut', 'Migut.L01000' => 'egut', 'Migut.L01953' => 'egut', 'MSTRG.10253' => 'ama', 'MSTRG.19077' => 'ama', 'MSTRG.26780' => 'ama', 'MSTRG.4023' => 'ama', 'MSTRG.5655' => 'ama', 'MSTRG.9992' => 'ama', 'Nitab4.5_0000043g0310' => 'nta', 'Nitab4.5_0000463g0080' => 'nta', 'Nitab4.5_0000705g0170' => 'nta', 'Nitab4.5_0001326g0060' => 'nta', 'Nitab4.5_0001628g0030' => 'nta', 'Nitab4.5_0002103g0110' => 'nta', 'Nitab4.5_0002946g0030' => 'nta', 'Nitab4.5_0004639g0030' => 'nta', 'Nn2g11149' => 'nnu', 'Nn2g13389' => 'nnu', 'Nn4g25326' => 'nnu', 'Nn4g26290' => 'nnu', 'Nn5g29865' => 'nnu', 'Oeu004163.1' => 'oeu', 'Oeu006901.1' => 'oeu', 'Oeu010096.1' => 'oeu', 'Oeu024340.1' => 'oeu', 'Oeu048369.1' => 'oeu', 'Os01g0973000' => 'osa', 'Os03g0273800' => 'osa', 'Os03g0701200' => 'osa', 'Os03g0834050' => 'osa', 'Os07g0634400' => 'osa', 'Peaxi162Scf00092g01414' => 'pax', 'Peaxi162Scf00165g00818' => 'pax', 'Peaxi162Scf00309g00516' => 'pax', 'Peaxi162Scf00774g00218' => 'pax', 'PGR004G1824' => 'pgr', 'PGR004G2606' => 'pgr', 'PGR031G2716' => 'pgr', 'PGR102G2460' => 'pgr', 'PGR142G2599' => 'pgr', 'PGSC0003DMG400000843' => 'stu', 'PGSC0003DMG400008829' => 'stu', 'PGSC0003DMG400030418' => 'stu', 'PGSC0003DMG400031834' => 'stu', 'PGSC0003DMG401028300' => 'stu', 'PGSC0003DMG402028300' => 'stu', 'Phvul.001G219300' => 'pvu', 'Phvul.007G056000' => 'pvu', 'Phvul.007G208000' => 'pvu', 'Phvul.008G119500' => 'pvu', 'Phvul.010G011200' => 'pvu', 'Phvul.010G014800' => 'pvu', 'Phvul.011G062900' => 'pvu', 'Phvul.L007043' => 'pvu', 'Potri.001G242300' => 'ptr', 'Potri.002G185300' => 'ptr', 'Potri.006G086900' => 'ptr', 'Potri.008G151700' => 'ptr', 'Potri.009G033500' => 'ptr', 'Potri.010G089300' => 'ptr', 'Potri.014G110800' => 'ptr', 'Pp3c27_8130' => 'ppa', 'Pp3c6_27410' => 'ppa', 'PRCOL_00001659' => 'pco', 'PRCOL_00001927' => 'pco', 'PRCOL_00003649' => 'pco', 'Prupe.1G011600' => 'ppe', 'Prupe.3G000800' => 'ppe', 'Prupe.3G001100' => 'ppe', 'Prupe.6G072700' => 'ppe', 'Prupe.6G072800' => 'ppe', 'Prupe.6G257300' => 'ppe', 'Prupe.8G033000' => 'ppe', 'Psat0s2633g0080' => 'psa', 'Psat0s3396g0080' => 'psa', 'Psat0s3396g0200' => 'psa', 'Psat3g139080' => 'psa', 'Psat5g285080' => 'psa', 'Psat6g157760' => 'psa', 'Psat6g208440' => 'psa', 'Psat7g215320' => 'psa', 'Psat7g215400' => 'psa', 'Psat7g235600' => 'psa', 'Psat7g235760' => 'psa', 'PSO063G4603' => 'pso', 'PSO210G0182' => 'pso', 'PSO210G0196' => 'pso', 'PSO339G0394' => 'pso', 'PSO339G4127' => 'pso', 'PSO513G0064' => 'pso', 'PSO761G0079' => 'pso', 'QL01p031003' => 'qlo', 'QL01p031078' => 'qlo', 'QL06p003004' => 'qlo', 'QL07p048731' => 'qlo', 'QL09p037427' => 'qlo', 'RcHm_v2.0_Chr3g0466361' => 'rch', 'RcHm_v2.0_Chr3g0485571' => 'rch', 'RcHm_v2.0_Chr4g0416551' => 'rch', 'RcHm_v2.0_Chr5g0065831' => 'rch', 'Rhsim01G0230500' => 'rsi', 'Rhsim05G0194000' => 'rsi', 'Rhsim08G0250400' => 'rsi', 'Sabra02G0131000' => 'sbr', 'Sabra06G0066300' => 'sbr', 'Sabra08G0115500' => 'sbr', 'Sabra09G0023900' => 'sbr', 'Sabra10G0054000' => 'sbr', 'Sabra14G0081500' => 'sbr', 'Sabra16G0147100' => 'sbr', 'SalBow2G2957' => 'sbo', 'SalBow4G3320' => 'sbo', 'SalBow8G1894' => 'sbo', 'Sc07g0007950' => 'sci', 'Sc12g0001360' => 'sci', 'Sc13g0004330' => 'sci', 'Sc20g0005010' => 'sci', 'Sed0000361' => 'sed', 'Sed0001706' => 'sed', 'Sed0002422' => 'sed', 'Sed0004029' => 'sed', 'Sed0004602' => 'sed', 'Sed0004943' => 'sed', 'Sed0008646' => 'sed', 'Sed0023313' => 'sed', 'Sed0024843' => 'sed', 'SEGI_00081' => 'sgi', 'SEGI_00947' => 'sgi', 'SEGI_04046' => 'sgi', 'SEGI_06880' => 'sgi', 'SEGI_09736' => 'sgi', 'SEGI_12741' => 'sgi', 'SEGI_14530' => 'sgi', 'SEGI_20705' => 'sgi', 'SEGI_26088' => 'sgi', 'SEGI_28323' => 'sgi', 'SEGI_33343' => 'sgi', 'SGA_v2.0_scaffold126G33775' => 'sas', 'SGA_v2.0_scaffold2G01337' => 'sas', 'SGA_v2.0_scaffold38G15006' => 'sas', 'SGA_v2.0_scaffold39G15264' => 'sas', 'SGA_v2.0_scaffold453G51880' => 'sas', 'SHI12696' => 'shi', 'SMO367G1096' => 'smo', 'Solyc01g068630.3' => 'sly', 'Solyc05g011880.3' => 'sly', 'Solyc06g076300.3' => 'sly', 'Solyc09g010940.4' => 'sly', 'Solyc09g075890.3' => 'sly', 'Sopen01g030560' => 'spe', 'Sopen05g006630' => 'spe', 'Sopen06g032720' => 'spe', 'Sopen09g005660' => 'spe', 'Sopen09g030690' => 'spe', 'Sp4g14540' => 'spa', 'Sp4g20030' => 'spa', 'Sp5g01320' => 'spa', 'Sp6g21170' => 'spa', 'Sp6g21180' => 'spa', 'Sp6g21190' => 'spa', 'Sp6g40220' => 'spa', 'TAR362G0122' => 'tar', 'TAR362G1338' => 'tar', 'TAR369G0590' => 'tar', 'TAR371G0824' => 'tar', 'TAR622G1429' => 'tar', 'TAR623G0734' => 'tar', 'TAR625G0441' => 'tar', 'TAR629G0976' => 'tar', 'TAR633G1195' => 'tar', 'TAR636G2660' => 'tar', 'THA.LOC104799440' => 'tha', 'THA.LOC104800966' => 'tha', 'THA.LOC104806559' => 'tha', 'THA.LOC104810765' => 'tha', 'THA.LOC104816266' => 'tha', 'THA.LOC104817419' => 'tha', 'THA.LOC104827021' => 'tha', 'Thecc.01G327400' => 'tca', 'Thecc.04G229200' => 'tca', 'Thecc.05G037400' => 'tca', 'Thecc.09G318600' => 'tca', 'Thecc.09G318700' => 'tca', 'Thhalv10006238m.g' => 'esa', 'Thhalv10014321m.g' => 'esa', 'Thhalv10014335m.g' => 'esa', 'Thhalv10015826m.g' => 'esa', 'Thhalv10017107m.g' => 'esa', 'Thhalv10017180m.g' => 'esa', 'Thhalv10029339m.g' => 'esa', 'TPR.G1699' => 'tpr', 'TPR.G23609' => 'tpr', 'TPR.G3081' => 'tpr', 'TPR.G40397' => 'tpr', 'TPR.G5522' => 'tpr', 'TPR.G5618' => 'tpr', 'TPR.G5626' => 'tpr', 'TWI09G1632' => 'twi', 'TWI23G1230' => 'twi', 'TWI53G1064' => 'twi', 'TWI59G0751' => 'twi', 'TWI74G0947' => 'twi', 'TWI77G0337' => 'twi', 'TWI79G1254' => 'twi', 'unitig_0.g2341' => 'ugi', 'unitig_26.g10006' => 'ugi', 'unitig_26.g10008' => 'ugi', 'unitig_26.g9192' => 'ugi', 'vmacro14547' => 'vma', 'vmacro15333' => 'vma', 'vmacro18743' => 'vma', 'vmacro20166' => 'vma', 'VMungo0331G0523' => 'vmu', 'VMungo0331G1202' => 'vmu', 'VMungo0720G1228' => 'vmu', 'VMungo0720G1514' => 'vmu', 'VMungo1080G0169' => 'vmu', 'VMungo1127G1475' => 'vmu', 'VMungo1383G1208' => 'vmu', 'VMungo1383G1698' => 'vmu', 'Zm00001eb012270' => 'zma', 'Zm00001eb054100' => 'zma', 'Zm00001eb063350' => 'zma', 'Zm00001eb328560' => 'zma', 'Zm00001eb342820' => 'zma', 'Zm00001eb362210' => 'zma', 'Zm00001eb397730' => 'zma', 'Zm00001eb399750' => 'zma' ), 'gf_id' => 'HOM05D000959', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000959' ), 'data_identifier' => 'HOM05D000959', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000959', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '622', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p07100' => 'bna', 'A03p11720' => 'bna', 'A05p08300' => 'bna', 'A05p13380' => 'bna', 'A09p54130' => 'bna', 'A10p16690' => 'bna', 'A10p16700' => 'bna', 'A10p33390' => 'bna', 'Aa31LG10G16020' => 'aar', 'Aa31LG1G11810' => 'aar', 'Aa31LG1G11830' => 'aar', 'Aa31LG1G22510' => 'aar', 'Aa31LG5G4890' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5793' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2310' => 'aag', 'Actinidia08499' => 'ach', 'Actinidia11262' => 'ach', 'Actinidia23926' => 'ach', 'Actinidia34420' => 'ach', 'Actinidia36970' => 'ach', 'Ah.02g111220' => 'amhyb', 'Ah.15g097750' => 'amhyb', 'AL4G27500' => 'aly', 'AL6G11470' => 'aly', 'AL8G35950' => 'aly', 'AL8G35960' => 'aly', 'AL8G35970' => 'aly', 'Aqoxy1G00912' => 'aox', 'Aqoxy2G02253' => 'aox', 'Aqoxy2G02411' => 'aox', 'Aqoxy5G00485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BZ66YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K8ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM4FUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6BF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HFV7XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25JBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0YNNV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MAKK6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P70IT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP2Z6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V61LZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YWP64R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3S9AI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7PGHH' => 'arhy', 'AT2G32150' => 'ath', 'AT3G62040' => 'ath', 'AT5G02230' => 'ath', 'AT5G59480' => 'ath', 'AT5G59490' => 'ath', 'ATR0332G060' => 'atr', 'ATR0559G190' => 'atr', 'ATR0693G294' => 'atr', 'Atru.chr3.3975' => 'acertr', 'Atru.chr3.3976' => 'acertr', 'Atru.chr3.3977' => 'acertr', 'Atru.chr4.2498' => 'acertr', 'Atru.chr5.838' => 'acertr', 'Atru.chr8.1990' => 'acertr', 'Atru.chr8.1991' => 'acertr', 'Atru.chr8.1992' => 'acertr', 'AUR62001759' => 'cqu', 'AUR62009545' => 'cqu', 'AUR62010474' => 'cqu', 'AUR62025820' => 'cqu', 'AUR62030422' => 'cqu', 'AUR62033605' => 'cqu', 'AUR62038615' => 'cqu', 'AUR62041347' => 'cqu', 'BcaB01g04574' => 'bca', 'BcaB02g09263' => 'bca', 'BcaB02g10453' => 'bca', 'BcaB05g22513' => 'bca', 'BcaB08g36253' => 'bca', 'BcaB08g36254' => 'bca', 'BcaC01g06519' => 'bca', 'BcaC02g11889' => 'bca', 'BcaC03g14010' => 'bca', 'BcaC03g18439' => 'bca', 'BcaC04g19765' => 'bca', 'BcaC09g48432' => 'bca', 'BcaNung07302' => 'bca', 'BolC2t06040H' => 'bol', 'BolC2t07346H' => 'bol', 'BolC3t13817H' => 'bol', 'BolC4t22625H' => 'bol', 'BolC4t23297H' => 'bol', 'BolC8t51278H' => 'bol', 'BolC9t58050H' => 'bol', 'BolC9t58051H' => 'bol', 'BolC9t60163H' => 'bol', 'BraA02t04712Z' => 'bra', 'BraA02t05791Z' => 'bra', 'BraA03t10483Z' => 'bra', 'BraA05t19795Z' => 'bra', 'BraA05t20276Z' => 'bra', 'BraA09t40827Z' => 'bra', 'BraA10t43750Z' => 'bra', 'BraA10t43751Z' => 'bra', 'BraA10t45370Z' => 'bra', 'C02p00400' => 'bna', 'C02p12460' => 'bna', 'C03p13680' => 'bna', 'C04p10270' => 'bna', 'C04p17500' => 'bna', 'C08p37010' => 'bna', 'C09p51880' => 'bna', 'C09p51890' => 'bna', 'C09p74300' => 'bna', 'CAN.G179.26' => 'can', 'CAN.G3384.1' => 'can', 'CAN.G394.68' => 'can', 'CAN.G907.13' => 'can', 'CANSAT11G0012' => 'cansat', 'CANSAT25G1586' => 'cansat', 'CANSAT35G0735' => 'cansat', 'CANSAT54G0556' => 'cansat', 'CANSAT64G0356' => 'cansat', 'CANSAT78G2042' => 'cansat', 'CARHR125920' => 'chi', 'CARHR131910' => 'chi', 'CARHR172390' => 'chi', 'CARHR211140' => 'chi', 'CARHR285850' => 'chi', 'CARHR285860' => 'chi', 'Carub.0004s1347' => 'cru', 'Carub.0004s1960' => 'cru', 'Carub.0005s2880' => 'cru', 'Carub.0006s0107' => 'cru', 'Carub.0008s2015' => 'cru', 'Carub.0008s2016' => 'cru', 'Carub.0008s2017' => 'cru', 'Ca_01315_v3' => 'car', 'Ca_05063_v3' => 'car', 'Ca_10231_v3' => 'car', 'Ca_10913_v3' => 'car', 'Ca_19156_v3' => 'car', 'Ca_23644_v3' => 'car', 'Ca_26735_v3' => 'car', 'Cc01_g13130' => 'ccan', 'Cc02_g21690' => 'ccan', 'Cc03_g03600' => 'ccan', 'Cc06_g02510' => 'ccan', 'CDE02G1265' => 'cde', 'CDE05G0415' => 'cde', 'CDE08G1082' => 'cde', 'Cfa005780' => 'cfa', 'Cfa011522' => 'cfa', 'Cfa011523' => 'cfa', 'Cfa015627' => 'cfa', 'Cfa017359' => 'cfa', 'Ciclev10005687m.g' => 'ccl', 'Ciclev10012173m.g' => 'ccl', 'Ciclev10021621m.g' => 'ccl', 'Ciclev10028968m.g' => 'ccl', 'Ciclev10029907m.g' => 'ccl', 'CiPaw.01G164800' => 'cil', 'CiPaw.07G083700' => 'cil', 'CiPaw.07G127000' => 'cil', 'CiPaw.07G136900' => 'cil', 'CiPaw.08G081700' => 'cil', 'CiPaw.09G194600' => 'cil', 'CiPaw.10G146500' => 'cil', 'CiPaw.13G091500' => 'cil', 'CiPaw.13G091600' => 'cil', 'ClCG00G003390' => 'cla', 'ClCG01G007220' => 'cla', 'ClCG03G001370' => 'cla', 'ClCG04G008100' => 'cla', 'ClCG06G006110' => 'cla', 'ClCG06G006130' => 'cla', 'ClCG10G021210' => 'cla', 'COL.COLO4_07648' => 'col', 'COL.COLO4_07650' => 'col', 'COL.COLO4_07651' => 'col', 'COL.COLO4_14780' => 'col', 'COL.COLO4_18546' => 'col', 'COL.COLO4_18547' => 'col', 'COL.COLO4_23103' => 'col', 'COL.COLO4_30419' => 'col', 'COL.COLO4_34232' => 'col', 'Cpa.g.sc169.20' => 'cpa', 'Cpa.g.sc57.45' => 'cpa', 'Cpa.g.sc58.124' => 'cpa', 'Cpa.g.sc58.125' => 'cpa', 'Cpa.g.sc81.118' => 'cpa', 'Cpa.g.sc81.119' => 'cpa', 'Cre12.g524700' => 'cre', 'CsaV3_1G034430' => 'csa', 'CsaV3_1G034440' => 'csa', 'CsaV3_1G034450' => 'csa', 'CsaV3_3G034830' => 'csa', 'CsaV3_4G025090' => 'csa', 'CsaV3_5G018660' => 'csa', 'CsaV3_6G038160' => 'csa', 'CSS0003447' => 'camsi', 'CSS0017840' => 'camsi', 'CSS0019260' => 'camsi', 'CSS0040375' => 'camsi', 'CSS0042533' => 'camsi', 'DCAR_005960' => 'dca', 'DCAR_012104' => 'dca', 'DCAR_012105' => 'dca', 'DCAR_012293' => 'dca', 'DCAR_015632' => 'dca', 'DCAR_024602' => 'dca', 'DCAR_028752' => 'dca', 'Dinv06261' => 'din', 'Dinv13982' => 'din', 'Dinv17029' => 'din', 'Dinv18463' => 'din', 'Dinv33181' => 'din', 'Dinv35585' => 'din', 'Dinv37161' => 'din', 'Dinv42977' => 'din', 'Dinv43122' => 'din', 'Dinv44517' => 'din', 'Duzib093G0256' => 'dzi', 'Duzib106G1254' => 'dzi', 'Duzib128G1789' => 'dzi', 'Duzib133G0633' => 'dzi', 'Duzib138G0510' => 'dzi', 'Duzib150G1084' => 'dzi', 'Duzib168G0488' => 'dzi', 'Duzib168G1523' => 'dzi', 'Duzib170G0133' => 'dzi', 'ECA234G1433' => 'eca', 'ECA236G1432' => 'eca', 'ECA236G2256' => 'eca', 'ECA236G2365' => 'eca', 'ECA236G4830' => 'eca', 'ECA248G1505' => 'eca', 'EL10Ac3g06431' => 'bvu', 'EL10Ac5g12577' => 'bvu', 'EL10Ac6g13533' => 'bvu', 'EL10Ac7g16045' => 'bvu', 'Eucgr.A01281' => 'egr', 'Eucgr.B02326' => 'egr', 'Eucgr.H03532' => 'egr', 'Eucgr.K00553' => 'egr', 'Eucgr.K03116' => 'egr', 'FAN02G3963' => 'fan', 'FAN05G0438' => 'fan', 'FAN09G2434' => 'fan', 'FAN12G3984' => 'fan', 'FAN14G0798' => 'fan', 'FAN17G0652' => 'fan', 'FAN19G1988' => 'fan', 'FAN22G0632' => 'fan', 'FAN23G0387' => 'fan', 'FAN26G1323' => 'fan', 'FAN28G0666' => 'fan', 'FvH4_1g26080' => 'fve', 'FvH4_3g36780' => 'fve', 'FvH4_4g15270' => 'fve', 'FvH4_6g13490' => 'fve', 'Glyma.01G098700' => 'gma', 'Glyma.03G065900' => 'gma', 'Glyma.03G073754' => 'gma', 'Glyma.03G073758' => 'gma', 'Glyma.03G083200' => 'gma', 'Glyma.03G225500' => 'gma', 'Glyma.05G037766' => 'gma', 'Glyma.07G133500' => 'gma', 'Glyma.10G139400' => 'gma', 'Glyma.10G248900' => 'gma', 'Glyma.11G137800' => 'gma', 'Glyma.12G061300' => 'gma', 'Glyma.13G337900' => 'gma', 'Glyma.15G036600' => 'gma', 'Glyma.18G182800' => 'gma', 'Glyma.19G222500' => 'gma', 'Glyma.20G144800' => 'gma', 'Gohir.A01G222000' => 'ghi', 'Gohir.A03G044000' => 'ghi', 'Gohir.A03G044100' => 'ghi', 'Gohir.A04G083100' => 'ghi', 'Gohir.A07G127200' => 'ghi', 'Gohir.A07G132400' => 'ghi', 'Gohir.A08G000700' => 'ghi', 'Gohir.A11G327300' => 'ghi', 'Gohir.D01G211500' => 'ghi', 'Gohir.D03G123400' => 'ghi', 'Gohir.D03G123500' => 'ghi', 'Gohir.D04G121800' => 'ghi', 'Gohir.D07G131500' => 'ghi', 'Gohir.D07G136600' => 'ghi', 'Gohir.D08G011600' => 'ghi', 'Gohir.D11G346200' => 'ghi', 'Gorai.001G142800' => 'gra', 'Gorai.001G148700' => 'gra', 'Gorai.002G257300' => 'gra', 'Gorai.003G130000' => 'gra', 'Gorai.003G130100' => 'gra', 'Gorai.004G005300' => 'gra', 'Gorai.007G376500' => 'gra', 'Gorai.012G104700' => 'gra', 'GSVIVG01017946001' => 'vvi', 'GSVIVG01024928001' => 'vvi', 'GSVIVG01028227001' => 'vvi', 'GSVIVG01034151001' => 'vvi', 'HanXRQChr05g0135031' => 'han', 'HanXRQChr05g0135041' => 'han', 'HanXRQChr05g0140021' => 'han', 'HanXRQChr06g0178981' => 'han', 'HanXRQChr07g0188251' => 'han', 'HanXRQChr08g0235311' => 'han', 'HanXRQChr09g0271011' => 'han', 'HanXRQChr10g0293321' => 'han', 'HanXRQChr13g0388171' => 'han', 'Haze_00916' => 'cav', 'Haze_05063' => 'cav', 'Haze_20814' => 'cav', 'Haze_24128' => 'cav', 'Hma1.2p1_0745F.1_g212010' => 'hma', 'Hma1.2p1_0757F.1_g213260' => 'hma', 'Hma1.2p1_0936F.1_g238840' => 'hma', 'Hma1.2p1_1735F.1_g299890' => 'hma', 'Hma1.2p1_1861F.1_g305685' => 'hma', 'HPP92_003397' => 'vpl', 'HPP92_012597' => 'vpl', 'HPP92_015520' => 'vpl', 'HPP92_015539' => 'vpl', 'HPP92_020373' => 'vpl', 'Hund04938' => 'sun', 'Hund10677' => 'sun', 'Hund11033' => 'sun', 'Hund12155' => 'sun', 'Lalb_Chr01g0022551' => 'lal', 'Lalb_Chr03g0042341' => 'lal', 'Lalb_Chr07g0192931' => 'lal', 'Lalb_Chr12g0209551' => 'lal', 'Lalb_Chr19g0125251' => 'lal', 'Lalb_Chr19g0137891' => 'lal', 'Lalb_Chr21g0304641' => 'lal', 'Lalb_Chr21g0309881' => 'lal', 'Lj1A5T12' => 'lonja', 'Lj1C148G10' => 'lonja', 'Lj2A93T83' => 'lonja', 'Lj3A738G68' => 'lonja', 'Lj3C966T1' => 'lonja', 'Lj3g0018958' => 'lja', 'Lj3g0021831' => 'lja', 'Lj3g0025443' => 'lja', 'Lj4g0026809' => 'lja', 'Lj5g0012558' => 'lja', 'Lj5g0021586' => 'lja', 'Lsat_1_v5_gn_5_156840' => 'lsa', 'Lsat_1_v5_gn_8_73460' => 'lsa', 'Lsat_1_v5_gn_8_73481' => 'lsa', 'Lsat_1_v5_gn_9_31601' => 'lsa', 'Lsat_1_v5_gn_9_77320' => 'lsa', 'Manes.01G171300' => 'mes', 'Manes.01G171400' => 'mes', 'Manes.01G236100' => 'mes', 'Manes.02G130500' => 'mes', 'Manes.02G130600' => 'mes', 'Manes.03G180200' => 'mes', 'Manes.05G007000' => 'mes', 'Manes.08G084400' => 'mes', 'Manes.09G092600' => 'mes', 'Manes.15G027900' => 'mes', 'MBI04_g40948_MAGBIO' => 'mbi', 'MBI14_g12123_MAGBIO' => 'mbi', 'MBI18_g28915_MAGBIO' => 'mbi', 'MCO09G053' => 'mco', 'MCO11G782' => 'mco', 'MCO15G215' => 'mco', 'MD03G1088500' => 'mdo', 'MD03G1088600' => 'mdo', 'MD04G1130800' => 'mdo', 'MD09G1291700' => 'mdo', 'MD11G1097500' => 'mdo', 'MD11G1097600' => 'mdo', 'MD12G1143900' => 'mdo', 'MD13G1191400' => 'mdo', 'MD16G1191500' => 'mdo', 'Medtr1g085570' => 'mtr', 'Medtr1g104610' => 'mtr', 'Medtr2g097520' => 'mtr', 'Medtr4g021800' => 'mtr', 'Medtr4g021825' => 'mtr', 'Medtr4g064270' => 'mtr', 'Medtr4g064380' => 'mtr', 'Medtr7g062150' => 'mtr', 'MELO3C003138.2' => 'cme', 'MELO3C005187.2' => 'cme', 'MELO3C009252.2' => 'cme', 'MELO3C014481.2' => 'cme', 'MELO3C020616.2' => 'cme', 'MELO3C020617.2' => 'cme', 'MELO3C020618.2' => 'cme', 'Migut.G00328' => 'egut', 'Migut.J00320' => 'egut', 'Migut.L01000' => 'egut', 'Migut.L01953' => 'egut', 'MSTRG.10253' => 'ama', 'MSTRG.19077' => 'ama', 'MSTRG.26780' => 'ama', 'MSTRG.4023' => 'ama', 'MSTRG.5655' => 'ama', 'MSTRG.9992' => 'ama', 'Nitab4.5_0000043g0310' => 'nta', 'Nitab4.5_0000463g0080' => 'nta', 'Nitab4.5_0000705g0170' => 'nta', 'Nitab4.5_0001326g0060' => 'nta', 'Nitab4.5_0001628g0030' => 'nta', 'Nitab4.5_0002103g0110' => 'nta', 'Nitab4.5_0002946g0030' => 'nta', 'Nitab4.5_0004639g0030' => 'nta', 'Nn2g11149' => 'nnu', 'Nn2g13389' => 'nnu', 'Nn4g25326' => 'nnu', 'Nn4g26290' => 'nnu', 'Nn5g29865' => 'nnu', 'Oeu004163.1' => 'oeu', 'Oeu006901.1' => 'oeu', 'Oeu010096.1' => 'oeu', 'Oeu024340.1' => 'oeu', 'Oeu048369.1' => 'oeu', 'Os01g0973000' => 'osa', 'Os03g0273800' => 'osa', 'Os03g0701200' => 'osa', 'Os03g0834050' => 'osa', 'Os07g0634400' => 'osa', 'Peaxi162Scf00092g01414' => 'pax', 'Peaxi162Scf00165g00818' => 'pax', 'Peaxi162Scf00309g00516' => 'pax', 'Peaxi162Scf00774g00218' => 'pax', 'PGR004G1824' => 'pgr', 'PGR004G2606' => 'pgr', 'PGR031G2716' => 'pgr', 'PGR102G2460' => 'pgr', 'PGR142G2599' => 'pgr', 'PGSC0003DMG400000843' => 'stu', 'PGSC0003DMG400008829' => 'stu', 'PGSC0003DMG400030418' => 'stu', 'PGSC0003DMG400031834' => 'stu', 'PGSC0003DMG401028300' => 'stu', 'PGSC0003DMG402028300' => 'stu', 'Phvul.001G219300' => 'pvu', 'Phvul.007G056000' => 'pvu', 'Phvul.007G208000' => 'pvu', 'Phvul.008G119500' => 'pvu', 'Phvul.010G011200' => 'pvu', 'Phvul.010G014800' => 'pvu', 'Phvul.011G062900' => 'pvu', 'Phvul.L007043' => 'pvu', 'Potri.001G242300' => 'ptr', 'Potri.002G185300' => 'ptr', 'Potri.006G086900' => 'ptr', 'Potri.008G151700' => 'ptr', 'Potri.009G033500' => 'ptr', 'Potri.010G089300' => 'ptr', 'Potri.014G110800' => 'ptr', 'Pp3c27_8130' => 'ppa', 'Pp3c6_27410' => 'ppa', 'PRCOL_00001659' => 'pco', 'PRCOL_00001927' => 'pco', 'PRCOL_00003649' => 'pco', 'Prupe.1G011600' => 'ppe', 'Prupe.3G000800' => 'ppe', 'Prupe.3G001100' => 'ppe', 'Prupe.6G072700' => 'ppe', 'Prupe.6G072800' => 'ppe', 'Prupe.6G257300' => 'ppe', 'Prupe.8G033000' => 'ppe', 'Psat0s2633g0080' => 'psa', 'Psat0s3396g0080' => 'psa', 'Psat0s3396g0200' => 'psa', 'Psat3g139080' => 'psa', 'Psat5g285080' => 'psa', 'Psat6g157760' => 'psa', 'Psat6g208440' => 'psa', 'Psat7g215320' => 'psa', 'Psat7g215400' => 'psa', 'Psat7g235600' => 'psa', 'Psat7g235760' => 'psa', 'PSO063G4603' => 'pso', 'PSO210G0182' => 'pso', 'PSO210G0196' => 'pso', 'PSO339G0394' => 'pso', 'PSO339G4127' => 'pso', 'PSO513G0064' => 'pso', 'PSO761G0079' => 'pso', 'QL01p031003' => 'qlo', 'QL01p031078' => 'qlo', 'QL06p003004' => 'qlo', 'QL07p048731' => 'qlo', 'QL09p037427' => 'qlo', 'RcHm_v2.0_Chr3g0466361' => 'rch', 'RcHm_v2.0_Chr3g0485571' => 'rch', 'RcHm_v2.0_Chr4g0416551' => 'rch', 'RcHm_v2.0_Chr5g0065831' => 'rch', 'Rhsim01G0230500' => 'rsi', 'Rhsim05G0194000' => 'rsi', 'Rhsim08G0250400' => 'rsi', 'Sabra02G0131000' => 'sbr', 'Sabra06G0066300' => 'sbr', 'Sabra08G0115500' => 'sbr', 'Sabra09G0023900' => 'sbr', 'Sabra10G0054000' => 'sbr', 'Sabra14G0081500' => 'sbr', 'Sabra16G0147100' => 'sbr', 'SalBow2G2957' => 'sbo', 'SalBow4G3320' => 'sbo', 'SalBow8G1894' => 'sbo', 'Sc07g0007950' => 'sci', 'Sc12g0001360' => 'sci', 'Sc13g0004330' => 'sci', 'Sc20g0005010' => 'sci', 'Sed0000361' => 'sed', 'Sed0001706' => 'sed', 'Sed0002422' => 'sed', 'Sed0004029' => 'sed', 'Sed0004602' => 'sed', 'Sed0004943' => 'sed', 'Sed0008646' => 'sed', 'Sed0023313' => 'sed', 'Sed0024843' => 'sed', 'SEGI_00081' => 'sgi', 'SEGI_00947' => 'sgi', 'SEGI_04046' => 'sgi', 'SEGI_06880' => 'sgi', 'SEGI_09736' => 'sgi', 'SEGI_12741' => 'sgi', 'SEGI_14530' => 'sgi', 'SEGI_20705' => 'sgi', 'SEGI_26088' => 'sgi', 'SEGI_28323' => 'sgi', 'SEGI_33343' => 'sgi', 'SGA_v2.0_scaffold126G33775' => 'sas', 'SGA_v2.0_scaffold2G01337' => 'sas', 'SGA_v2.0_scaffold38G15006' => 'sas', 'SGA_v2.0_scaffold39G15264' => 'sas', 'SGA_v2.0_scaffold453G51880' => 'sas', 'SHI12696' => 'shi', 'SMO367G1096' => 'smo', 'Solyc01g068630.3' => 'sly', 'Solyc05g011880.3' => 'sly', 'Solyc06g076300.3' => 'sly', 'Solyc09g010940.4' => 'sly', 'Solyc09g075890.3' => 'sly', 'Sopen01g030560' => 'spe', 'Sopen05g006630' => 'spe', 'Sopen06g032720' => 'spe', 'Sopen09g005660' => 'spe', 'Sopen09g030690' => 'spe', 'Sp4g14540' => 'spa', 'Sp4g20030' => 'spa', 'Sp5g01320' => 'spa', 'Sp6g21170' => 'spa', 'Sp6g21180' => 'spa', 'Sp6g21190' => 'spa', 'Sp6g40220' => 'spa', 'TAR362G0122' => 'tar', 'TAR362G1338' => 'tar', 'TAR369G0590' => 'tar', 'TAR371G0824' => 'tar', 'TAR622G1429' => 'tar', 'TAR623G0734' => 'tar', 'TAR625G0441' => 'tar', 'TAR629G0976' => 'tar', 'TAR633G1195' => 'tar', 'TAR636G2660' => 'tar', 'THA.LOC104799440' => 'tha', 'THA.LOC104800966' => 'tha', 'THA.LOC104806559' => 'tha', 'THA.LOC104810765' => 'tha', 'THA.LOC104816266' => 'tha', 'THA.LOC104817419' => 'tha', 'THA.LOC104827021' => 'tha', 'Thecc.01G327400' => 'tca', 'Thecc.04G229200' => 'tca', 'Thecc.05G037400' => 'tca', 'Thecc.09G318600' => 'tca', 'Thecc.09G318700' => 'tca', 'Thhalv10006238m.g' => 'esa', 'Thhalv10014321m.g' => 'esa', 'Thhalv10014335m.g' => 'esa', 'Thhalv10015826m.g' => 'esa', 'Thhalv10017107m.g' => 'esa', 'Thhalv10017180m.g' => 'esa', 'Thhalv10029339m.g' => 'esa', 'TPR.G1699' => 'tpr', 'TPR.G23609' => 'tpr', 'TPR.G3081' => 'tpr', 'TPR.G40397' => 'tpr', 'TPR.G5522' => 'tpr', 'TPR.G5618' => 'tpr', 'TPR.G5626' => 'tpr', 'TWI09G1632' => 'twi', 'TWI23G1230' => 'twi', 'TWI53G1064' => 'twi', 'TWI59G0751' => 'twi', 'TWI74G0947' => 'twi', 'TWI77G0337' => 'twi', 'TWI79G1254' => 'twi', 'unitig_0.g2341' => 'ugi', 'unitig_26.g10006' => 'ugi', 'unitig_26.g10008' => 'ugi', 'unitig_26.g9192' => 'ugi', 'vmacro14547' => 'vma', 'vmacro15333' => 'vma', 'vmacro18743' => 'vma', 'vmacro20166' => 'vma', 'VMungo0331G0523' => 'vmu', 'VMungo0331G1202' => 'vmu', 'VMungo0720G1228' => 'vmu', 'VMungo0720G1514' => 'vmu', 'VMungo1080G0169' => 'vmu', 'VMungo1127G1475' => 'vmu', 'VMungo1383G1208' => 'vmu', 'VMungo1383G1698' => 'vmu', 'Zm00001eb012270' => 'zma', 'Zm00001eb054100' => 'zma', 'Zm00001eb063350' => 'zma', 'Zm00001eb328560' => 'zma', 'Zm00001eb342820' => 'zma', 'Zm00001eb362210' => 'zma', 'Zm00001eb397730' => 'zma', 'Zm00001eb399750' => 'zma' ) $gf_id = 'HOM05D000959' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000959' ) $data_identifier = 'HOM05D000959' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 5, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 5, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 10, 'mbi' => (int) 3, 'mco' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 2, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 3, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 11, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399750' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000959', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '622', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p07100' => 'bna', 'A03p11720' => 'bna', 'A05p08300' => 'bna', 'A05p13380' => 'bna', 'A09p54130' => 'bna', 'A10p16690' => 'bna', 'A10p16700' => 'bna', 'A10p33390' => 'bna', 'Aa31LG10G16020' => 'aar', 'Aa31LG1G11810' => 'aar', 'Aa31LG1G11830' => 'aar', 'Aa31LG1G22510' => 'aar', 'Aa31LG5G4890' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5793' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2310' => 'aag', 'Actinidia08499' => 'ach', 'Actinidia11262' => 'ach', 'Actinidia23926' => 'ach', 'Actinidia34420' => 'ach', 'Actinidia36970' => 'ach', 'Ah.02g111220' => 'amhyb', 'Ah.15g097750' => 'amhyb', 'AL4G27500' => 'aly', 'AL6G11470' => 'aly', 'AL8G35950' => 'aly', 'AL8G35960' => 'aly', 'AL8G35970' => 'aly', 'Aqoxy1G00912' => 'aox', 'Aqoxy2G02253' => 'aox', 'Aqoxy2G02411' => 'aox', 'Aqoxy5G00485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BZ66YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K8ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM4FUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6BF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HFV7XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25JBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0YNNV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MAKK6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P70IT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP2Z6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V61LZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YWP64R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3S9AI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7PGHH' => 'arhy', 'AT2G32150' => 'ath', 'AT3G62040' => 'ath', 'AT5G02230' => 'ath', 'AT5G59480' => 'ath', 'AT5G59490' => 'ath', 'ATR0332G060' => 'atr', 'ATR0559G190' => 'atr', 'ATR0693G294' => 'atr', 'Atru.chr3.3975' => 'acertr', 'Atru.chr3.3976' => 'acertr', 'Atru.chr3.3977' => 'acertr', 'Atru.chr4.2498' => 'acertr', 'Atru.chr5.838' => 'acertr', 'Atru.chr8.1990' => 'acertr', 'Atru.chr8.1991' => 'acertr', 'Atru.chr8.1992' => 'acertr', 'AUR62001759' => 'cqu', 'AUR62009545' => 'cqu', 'AUR62010474' => 'cqu', 'AUR62025820' => 'cqu', 'AUR62030422' => 'cqu', 'AUR62033605' => 'cqu', 'AUR62038615' => 'cqu', 'AUR62041347' => 'cqu', 'BcaB01g04574' => 'bca', 'BcaB02g09263' => 'bca', 'BcaB02g10453' => 'bca', 'BcaB05g22513' => 'bca', 'BcaB08g36253' => 'bca', 'BcaB08g36254' => 'bca', 'BcaC01g06519' => 'bca', 'BcaC02g11889' => 'bca', 'BcaC03g14010' => 'bca', 'BcaC03g18439' => 'bca', 'BcaC04g19765' => 'bca', 'BcaC09g48432' => 'bca', 'BcaNung07302' => 'bca', 'BolC2t06040H' => 'bol', 'BolC2t07346H' => 'bol', 'BolC3t13817H' => 'bol', 'BolC4t22625H' => 'bol', 'BolC4t23297H' => 'bol', 'BolC8t51278H' => 'bol', 'BolC9t58050H' => 'bol', 'BolC9t58051H' => 'bol', 'BolC9t60163H' => 'bol', 'BraA02t04712Z' => 'bra', 'BraA02t05791Z' => 'bra', 'BraA03t10483Z' => 'bra', 'BraA05t19795Z' => 'bra', 'BraA05t20276Z' => 'bra', 'BraA09t40827Z' => 'bra', 'BraA10t43750Z' => 'bra', 'BraA10t43751Z' => 'bra', 'BraA10t45370Z' => 'bra', 'C02p00400' => 'bna', 'C02p12460' => 'bna', 'C03p13680' => 'bna', 'C04p10270' => 'bna', 'C04p17500' => 'bna', 'C08p37010' => 'bna', 'C09p51880' => 'bna', 'C09p51890' => 'bna', 'C09p74300' => 'bna', 'CAN.G179.26' => 'can', 'CAN.G3384.1' => 'can', 'CAN.G394.68' => 'can', 'CAN.G907.13' => 'can', 'CANSAT11G0012' => 'cansat', 'CANSAT25G1586' => 'cansat', 'CANSAT35G0735' => 'cansat', 'CANSAT54G0556' => 'cansat', 'CANSAT64G0356' => 'cansat', 'CANSAT78G2042' => 'cansat', 'CARHR125920' => 'chi', 'CARHR131910' => 'chi', 'CARHR172390' => 'chi', 'CARHR211140' => 'chi', 'CARHR285850' => 'chi', 'CARHR285860' => 'chi', 'Carub.0004s1347' => 'cru', 'Carub.0004s1960' => 'cru', 'Carub.0005s2880' => 'cru', 'Carub.0006s0107' => 'cru', 'Carub.0008s2015' => 'cru', 'Carub.0008s2016' => 'cru', 'Carub.0008s2017' => 'cru', 'Ca_01315_v3' => 'car', 'Ca_05063_v3' => 'car', 'Ca_10231_v3' => 'car', 'Ca_10913_v3' => 'car', 'Ca_19156_v3' => 'car', 'Ca_23644_v3' => 'car', 'Ca_26735_v3' => 'car', 'Cc01_g13130' => 'ccan', 'Cc02_g21690' => 'ccan', 'Cc03_g03600' => 'ccan', 'Cc06_g02510' => 'ccan', 'CDE02G1265' => 'cde', 'CDE05G0415' => 'cde', 'CDE08G1082' => 'cde', 'Cfa005780' => 'cfa', 'Cfa011522' => 'cfa', 'Cfa011523' => 'cfa', 'Cfa015627' => 'cfa', 'Cfa017359' => 'cfa', 'Ciclev10005687m.g' => 'ccl', 'Ciclev10012173m.g' => 'ccl', 'Ciclev10021621m.g' => 'ccl', 'Ciclev10028968m.g' => 'ccl', 'Ciclev10029907m.g' => 'ccl', 'CiPaw.01G164800' => 'cil', 'CiPaw.07G083700' => 'cil', 'CiPaw.07G127000' => 'cil', 'CiPaw.07G136900' => 'cil', 'CiPaw.08G081700' => 'cil', 'CiPaw.09G194600' => 'cil', 'CiPaw.10G146500' => 'cil', 'CiPaw.13G091500' => 'cil', 'CiPaw.13G091600' => 'cil', 'ClCG00G003390' => 'cla', 'ClCG01G007220' => 'cla', 'ClCG03G001370' => 'cla', 'ClCG04G008100' => 'cla', 'ClCG06G006110' => 'cla', 'ClCG06G006130' => 'cla', 'ClCG10G021210' => 'cla', 'COL.COLO4_07648' => 'col', 'COL.COLO4_07650' => 'col', 'COL.COLO4_07651' => 'col', 'COL.COLO4_14780' => 'col', 'COL.COLO4_18546' => 'col', 'COL.COLO4_18547' => 'col', 'COL.COLO4_23103' => 'col', 'COL.COLO4_30419' => 'col', 'COL.COLO4_34232' => 'col', 'Cpa.g.sc169.20' => 'cpa', 'Cpa.g.sc57.45' => 'cpa', 'Cpa.g.sc58.124' => 'cpa', 'Cpa.g.sc58.125' => 'cpa', 'Cpa.g.sc81.118' => 'cpa', 'Cpa.g.sc81.119' => 'cpa', 'Cre12.g524700' => 'cre', 'CsaV3_1G034430' => 'csa', 'CsaV3_1G034440' => 'csa', 'CsaV3_1G034450' => 'csa', 'CsaV3_3G034830' => 'csa', 'CsaV3_4G025090' => 'csa', 'CsaV3_5G018660' => 'csa', 'CsaV3_6G038160' => 'csa', 'CSS0003447' => 'camsi', 'CSS0017840' => 'camsi', 'CSS0019260' => 'camsi', 'CSS0040375' => 'camsi', 'CSS0042533' => 'camsi', 'DCAR_005960' => 'dca', 'DCAR_012104' => 'dca', 'DCAR_012105' => 'dca', 'DCAR_012293' => 'dca', 'DCAR_015632' => 'dca', 'DCAR_024602' => 'dca', 'DCAR_028752' => 'dca', 'Dinv06261' => 'din', 'Dinv13982' => 'din', 'Dinv17029' => 'din', 'Dinv18463' => 'din', 'Dinv33181' => 'din', 'Dinv35585' => 'din', 'Dinv37161' => 'din', 'Dinv42977' => 'din', 'Dinv43122' => 'din', 'Dinv44517' => 'din', 'Duzib093G0256' => 'dzi', 'Duzib106G1254' => 'dzi', 'Duzib128G1789' => 'dzi', 'Duzib133G0633' => 'dzi', 'Duzib138G0510' => 'dzi', 'Duzib150G1084' => 'dzi', 'Duzib168G0488' => 'dzi', 'Duzib168G1523' => 'dzi', 'Duzib170G0133' => 'dzi', 'ECA234G1433' => 'eca', 'ECA236G1432' => 'eca', 'ECA236G2256' => 'eca', 'ECA236G2365' => 'eca', 'ECA236G4830' => 'eca', 'ECA248G1505' => 'eca', 'EL10Ac3g06431' => 'bvu', 'EL10Ac5g12577' => 'bvu', 'EL10Ac6g13533' => 'bvu', 'EL10Ac7g16045' => 'bvu', 'Eucgr.A01281' => 'egr', 'Eucgr.B02326' => 'egr', 'Eucgr.H03532' => 'egr', 'Eucgr.K00553' => 'egr', 'Eucgr.K03116' => 'egr', 'FAN02G3963' => 'fan', 'FAN05G0438' => 'fan', 'FAN09G2434' => 'fan', 'FAN12G3984' => 'fan', 'FAN14G0798' => 'fan', 'FAN17G0652' => 'fan', 'FAN19G1988' => 'fan', 'FAN22G0632' => 'fan', 'FAN23G0387' => 'fan', 'FAN26G1323' => 'fan', 'FAN28G0666' => 'fan', 'FvH4_1g26080' => 'fve', 'FvH4_3g36780' => 'fve', 'FvH4_4g15270' => 'fve', 'FvH4_6g13490' => 'fve', 'Glyma.01G098700' => 'gma', 'Glyma.03G065900' => 'gma', 'Glyma.03G073754' => 'gma', 'Glyma.03G073758' => 'gma', 'Glyma.03G083200' => 'gma', 'Glyma.03G225500' => 'gma', 'Glyma.05G037766' => 'gma', 'Glyma.07G133500' => 'gma', 'Glyma.10G139400' => 'gma', 'Glyma.10G248900' => 'gma', 'Glyma.11G137800' => 'gma', 'Glyma.12G061300' => 'gma', 'Glyma.13G337900' => 'gma', 'Glyma.15G036600' => 'gma', 'Glyma.18G182800' => 'gma', 'Glyma.19G222500' => 'gma', 'Glyma.20G144800' => 'gma', 'Gohir.A01G222000' => 'ghi', 'Gohir.A03G044000' => 'ghi', 'Gohir.A03G044100' => 'ghi', 'Gohir.A04G083100' => 'ghi', 'Gohir.A07G127200' => 'ghi', 'Gohir.A07G132400' => 'ghi', 'Gohir.A08G000700' => 'ghi', 'Gohir.A11G327300' => 'ghi', 'Gohir.D01G211500' => 'ghi', 'Gohir.D03G123400' => 'ghi', 'Gohir.D03G123500' => 'ghi', 'Gohir.D04G121800' => 'ghi', 'Gohir.D07G131500' => 'ghi', 'Gohir.D07G136600' => 'ghi', 'Gohir.D08G011600' => 'ghi', 'Gohir.D11G346200' => 'ghi', 'Gorai.001G142800' => 'gra', 'Gorai.001G148700' => 'gra', 'Gorai.002G257300' => 'gra', 'Gorai.003G130000' => 'gra', 'Gorai.003G130100' => 'gra', 'Gorai.004G005300' => 'gra', 'Gorai.007G376500' => 'gra', 'Gorai.012G104700' => 'gra', 'GSVIVG01017946001' => 'vvi', 'GSVIVG01024928001' => 'vvi', 'GSVIVG01028227001' => 'vvi', 'GSVIVG01034151001' => 'vvi', 'HanXRQChr05g0135031' => 'han', 'HanXRQChr05g0135041' => 'han', 'HanXRQChr05g0140021' => 'han', 'HanXRQChr06g0178981' => 'han', 'HanXRQChr07g0188251' => 'han', 'HanXRQChr08g0235311' => 'han', 'HanXRQChr09g0271011' => 'han', 'HanXRQChr10g0293321' => 'han', 'HanXRQChr13g0388171' => 'han', 'Haze_00916' => 'cav', 'Haze_05063' => 'cav', 'Haze_20814' => 'cav', 'Haze_24128' => 'cav', 'Hma1.2p1_0745F.1_g212010' => 'hma', 'Hma1.2p1_0757F.1_g213260' => 'hma', 'Hma1.2p1_0936F.1_g238840' => 'hma', 'Hma1.2p1_1735F.1_g299890' => 'hma', 'Hma1.2p1_1861F.1_g305685' => 'hma', 'HPP92_003397' => 'vpl', 'HPP92_012597' => 'vpl', 'HPP92_015520' => 'vpl', 'HPP92_015539' => 'vpl', 'HPP92_020373' => 'vpl', 'Hund04938' => 'sun', 'Hund10677' => 'sun', 'Hund11033' => 'sun', 'Hund12155' => 'sun', 'Lalb_Chr01g0022551' => 'lal', 'Lalb_Chr03g0042341' => 'lal', 'Lalb_Chr07g0192931' => 'lal', 'Lalb_Chr12g0209551' => 'lal', 'Lalb_Chr19g0125251' => 'lal', 'Lalb_Chr19g0137891' => 'lal', 'Lalb_Chr21g0304641' => 'lal', 'Lalb_Chr21g0309881' => 'lal', 'Lj1A5T12' => 'lonja', 'Lj1C148G10' => 'lonja', 'Lj2A93T83' => 'lonja', 'Lj3A738G68' => 'lonja', 'Lj3C966T1' => 'lonja', 'Lj3g0018958' => 'lja', 'Lj3g0021831' => 'lja', 'Lj3g0025443' => 'lja', 'Lj4g0026809' => 'lja', 'Lj5g0012558' => 'lja', 'Lj5g0021586' => 'lja', 'Lsat_1_v5_gn_5_156840' => 'lsa', 'Lsat_1_v5_gn_8_73460' => 'lsa', 'Lsat_1_v5_gn_8_73481' => 'lsa', 'Lsat_1_v5_gn_9_31601' => 'lsa', 'Lsat_1_v5_gn_9_77320' => 'lsa', 'Manes.01G171300' => 'mes', 'Manes.01G171400' => 'mes', 'Manes.01G236100' => 'mes', 'Manes.02G130500' => 'mes', 'Manes.02G130600' => 'mes', 'Manes.03G180200' => 'mes', 'Manes.05G007000' => 'mes', 'Manes.08G084400' => 'mes', 'Manes.09G092600' => 'mes', 'Manes.15G027900' => 'mes', 'MBI04_g40948_MAGBIO' => 'mbi', 'MBI14_g12123_MAGBIO' => 'mbi', 'MBI18_g28915_MAGBIO' => 'mbi', 'MCO09G053' => 'mco', 'MCO11G782' => 'mco', 'MCO15G215' => 'mco', 'MD03G1088500' => 'mdo', 'MD03G1088600' => 'mdo', 'MD04G1130800' => 'mdo', 'MD09G1291700' => 'mdo', 'MD11G1097500' => 'mdo', 'MD11G1097600' => 'mdo', 'MD12G1143900' => 'mdo', 'MD13G1191400' => 'mdo', 'MD16G1191500' => 'mdo', 'Medtr1g085570' => 'mtr', 'Medtr1g104610' => 'mtr', 'Medtr2g097520' => 'mtr', 'Medtr4g021800' => 'mtr', 'Medtr4g021825' => 'mtr', 'Medtr4g064270' => 'mtr', 'Medtr4g064380' => 'mtr', 'Medtr7g062150' => 'mtr', 'MELO3C003138.2' => 'cme', 'MELO3C005187.2' => 'cme', 'MELO3C009252.2' => 'cme', 'MELO3C014481.2' => 'cme', 'MELO3C020616.2' => 'cme', 'MELO3C020617.2' => 'cme', 'MELO3C020618.2' => 'cme', 'Migut.G00328' => 'egut', 'Migut.J00320' => 'egut', 'Migut.L01000' => 'egut', 'Migut.L01953' => 'egut', 'MSTRG.10253' => 'ama', 'MSTRG.19077' => 'ama', 'MSTRG.26780' => 'ama', 'MSTRG.4023' => 'ama', 'MSTRG.5655' => 'ama', 'MSTRG.9992' => 'ama', 'Nitab4.5_0000043g0310' => 'nta', 'Nitab4.5_0000463g0080' => 'nta', 'Nitab4.5_0000705g0170' => 'nta', 'Nitab4.5_0001326g0060' => 'nta', 'Nitab4.5_0001628g0030' => 'nta', 'Nitab4.5_0002103g0110' => 'nta', 'Nitab4.5_0002946g0030' => 'nta', 'Nitab4.5_0004639g0030' => 'nta', 'Nn2g11149' => 'nnu', 'Nn2g13389' => 'nnu', 'Nn4g25326' => 'nnu', 'Nn4g26290' => 'nnu', 'Nn5g29865' => 'nnu', 'Oeu004163.1' => 'oeu', 'Oeu006901.1' => 'oeu', 'Oeu010096.1' => 'oeu', 'Oeu024340.1' => 'oeu', 'Oeu048369.1' => 'oeu', 'Os01g0973000' => 'osa', 'Os03g0273800' => 'osa', 'Os03g0701200' => 'osa', 'Os03g0834050' => 'osa', 'Os07g0634400' => 'osa', 'Peaxi162Scf00092g01414' => 'pax', 'Peaxi162Scf00165g00818' => 'pax', 'Peaxi162Scf00309g00516' => 'pax', 'Peaxi162Scf00774g00218' => 'pax', 'PGR004G1824' => 'pgr', 'PGR004G2606' => 'pgr', 'PGR031G2716' => 'pgr', 'PGR102G2460' => 'pgr', 'PGR142G2599' => 'pgr', 'PGSC0003DMG400000843' => 'stu', 'PGSC0003DMG400008829' => 'stu', 'PGSC0003DMG400030418' => 'stu', 'PGSC0003DMG400031834' => 'stu', 'PGSC0003DMG401028300' => 'stu', 'PGSC0003DMG402028300' => 'stu', 'Phvul.001G219300' => 'pvu', 'Phvul.007G056000' => 'pvu', 'Phvul.007G208000' => 'pvu', 'Phvul.008G119500' => 'pvu', 'Phvul.010G011200' => 'pvu', 'Phvul.010G014800' => 'pvu', 'Phvul.011G062900' => 'pvu', 'Phvul.L007043' => 'pvu', 'Potri.001G242300' => 'ptr', 'Potri.002G185300' => 'ptr', 'Potri.006G086900' => 'ptr', 'Potri.008G151700' => 'ptr', 'Potri.009G033500' => 'ptr', 'Potri.010G089300' => 'ptr', 'Potri.014G110800' => 'ptr', 'Pp3c27_8130' => 'ppa', 'Pp3c6_27410' => 'ppa', 'PRCOL_00001659' => 'pco', 'PRCOL_00001927' => 'pco', 'PRCOL_00003649' => 'pco', 'Prupe.1G011600' => 'ppe', 'Prupe.3G000800' => 'ppe', 'Prupe.3G001100' => 'ppe', 'Prupe.6G072700' => 'ppe', 'Prupe.6G072800' => 'ppe', 'Prupe.6G257300' => 'ppe', 'Prupe.8G033000' => 'ppe', 'Psat0s2633g0080' => 'psa', 'Psat0s3396g0080' => 'psa', 'Psat0s3396g0200' => 'psa', 'Psat3g139080' => 'psa', 'Psat5g285080' => 'psa', 'Psat6g157760' => 'psa', 'Psat6g208440' => 'psa', 'Psat7g215320' => 'psa', 'Psat7g215400' => 'psa', 'Psat7g235600' => 'psa', 'Psat7g235760' => 'psa', 'PSO063G4603' => 'pso', 'PSO210G0182' => 'pso', 'PSO210G0196' => 'pso', 'PSO339G0394' => 'pso', 'PSO339G4127' => 'pso', 'PSO513G0064' => 'pso', 'PSO761G0079' => 'pso', 'QL01p031003' => 'qlo', 'QL01p031078' => 'qlo', 'QL06p003004' => 'qlo', 'QL07p048731' => 'qlo', 'QL09p037427' => 'qlo', 'RcHm_v2.0_Chr3g0466361' => 'rch', 'RcHm_v2.0_Chr3g0485571' => 'rch', 'RcHm_v2.0_Chr4g0416551' => 'rch', 'RcHm_v2.0_Chr5g0065831' => 'rch', 'Rhsim01G0230500' => 'rsi', 'Rhsim05G0194000' => 'rsi', 'Rhsim08G0250400' => 'rsi', 'Sabra02G0131000' => 'sbr', 'Sabra06G0066300' => 'sbr', 'Sabra08G0115500' => 'sbr', 'Sabra09G0023900' => 'sbr', 'Sabra10G0054000' => 'sbr', 'Sabra14G0081500' => 'sbr', 'Sabra16G0147100' => 'sbr', 'SalBow2G2957' => 'sbo', 'SalBow4G3320' => 'sbo', 'SalBow8G1894' => 'sbo', 'Sc07g0007950' => 'sci', 'Sc12g0001360' => 'sci', 'Sc13g0004330' => 'sci', 'Sc20g0005010' => 'sci', 'Sed0000361' => 'sed', 'Sed0001706' => 'sed', 'Sed0002422' => 'sed', 'Sed0004029' => 'sed', 'Sed0004602' => 'sed', 'Sed0004943' => 'sed', 'Sed0008646' => 'sed', 'Sed0023313' => 'sed', 'Sed0024843' => 'sed', 'SEGI_00081' => 'sgi', 'SEGI_00947' => 'sgi', 'SEGI_04046' => 'sgi', 'SEGI_06880' => 'sgi', 'SEGI_09736' => 'sgi', 'SEGI_12741' => 'sgi', 'SEGI_14530' => 'sgi', 'SEGI_20705' => 'sgi', 'SEGI_26088' => 'sgi', 'SEGI_28323' => 'sgi', 'SEGI_33343' => 'sgi', 'SGA_v2.0_scaffold126G33775' => 'sas', 'SGA_v2.0_scaffold2G01337' => 'sas', 'SGA_v2.0_scaffold38G15006' => 'sas', 'SGA_v2.0_scaffold39G15264' => 'sas', 'SGA_v2.0_scaffold453G51880' => 'sas', 'SHI12696' => 'shi', 'SMO367G1096' => 'smo', 'Solyc01g068630.3' => 'sly', 'Solyc05g011880.3' => 'sly', 'Solyc06g076300.3' => 'sly', 'Solyc09g010940.4' => 'sly', 'Solyc09g075890.3' => 'sly', 'Sopen01g030560' => 'spe', 'Sopen05g006630' => 'spe', 'Sopen06g032720' => 'spe', 'Sopen09g005660' => 'spe', 'Sopen09g030690' => 'spe', 'Sp4g14540' => 'spa', 'Sp4g20030' => 'spa', 'Sp5g01320' => 'spa', 'Sp6g21170' => 'spa', 'Sp6g21180' => 'spa', 'Sp6g21190' => 'spa', 'Sp6g40220' => 'spa', 'TAR362G0122' => 'tar', 'TAR362G1338' => 'tar', 'TAR369G0590' => 'tar', 'TAR371G0824' => 'tar', 'TAR622G1429' => 'tar', 'TAR623G0734' => 'tar', 'TAR625G0441' => 'tar', 'TAR629G0976' => 'tar', 'TAR633G1195' => 'tar', 'TAR636G2660' => 'tar', 'THA.LOC104799440' => 'tha', 'THA.LOC104800966' => 'tha', 'THA.LOC104806559' => 'tha', 'THA.LOC104810765' => 'tha', 'THA.LOC104816266' => 'tha', 'THA.LOC104817419' => 'tha', 'THA.LOC104827021' => 'tha', 'Thecc.01G327400' => 'tca', 'Thecc.04G229200' => 'tca', 'Thecc.05G037400' => 'tca', 'Thecc.09G318600' => 'tca', 'Thecc.09G318700' => 'tca', 'Thhalv10006238m.g' => 'esa', 'Thhalv10014321m.g' => 'esa', 'Thhalv10014335m.g' => 'esa', 'Thhalv10015826m.g' => 'esa', 'Thhalv10017107m.g' => 'esa', 'Thhalv10017180m.g' => 'esa', 'Thhalv10029339m.g' => 'esa', 'TPR.G1699' => 'tpr', 'TPR.G23609' => 'tpr', 'TPR.G3081' => 'tpr', 'TPR.G40397' => 'tpr', 'TPR.G5522' => 'tpr', 'TPR.G5618' => 'tpr', 'TPR.G5626' => 'tpr', 'TWI09G1632' => 'twi', 'TWI23G1230' => 'twi', 'TWI53G1064' => 'twi', 'TWI59G0751' => 'twi', 'TWI74G0947' => 'twi', 'TWI77G0337' => 'twi', 'TWI79G1254' => 'twi', 'unitig_0.g2341' => 'ugi', 'unitig_26.g10006' => 'ugi', 'unitig_26.g10008' => 'ugi', 'unitig_26.g9192' => 'ugi', 'vmacro14547' => 'vma', 'vmacro15333' => 'vma', 'vmacro18743' => 'vma', 'vmacro20166' => 'vma', 'VMungo0331G0523' => 'vmu', 'VMungo0331G1202' => 'vmu', 'VMungo0720G1228' => 'vmu', 'VMungo0720G1514' => 'vmu', 'VMungo1080G0169' => 'vmu', 'VMungo1127G1475' => 'vmu', 'VMungo1383G1208' => 'vmu', 'VMungo1383G1698' => 'vmu', 'Zm00001eb012270' => 'zma', 'Zm00001eb054100' => 'zma', 'Zm00001eb063350' => 'zma', 'Zm00001eb328560' => 'zma', 'Zm00001eb342820' => 'zma', 'Zm00001eb362210' => 'zma', 'Zm00001eb397730' => 'zma', 'Zm00001eb399750' => 'zma' ), 'gf_id' => 'HOM05D000959', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000959' ), 'data_identifier' => 'HOM05D000959', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000959', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '622', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p07100' => 'bna', 'A03p11720' => 'bna', 'A05p08300' => 'bna', 'A05p13380' => 'bna', 'A09p54130' => 'bna', 'A10p16690' => 'bna', 'A10p16700' => 'bna', 'A10p33390' => 'bna', 'Aa31LG10G16020' => 'aar', 'Aa31LG1G11810' => 'aar', 'Aa31LG1G11830' => 'aar', 'Aa31LG1G22510' => 'aar', 'Aa31LG5G4890' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5793' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2310' => 'aag', 'Actinidia08499' => 'ach', 'Actinidia11262' => 'ach', 'Actinidia23926' => 'ach', 'Actinidia34420' => 'ach', 'Actinidia36970' => 'ach', 'Ah.02g111220' => 'amhyb', 'Ah.15g097750' => 'amhyb', 'AL4G27500' => 'aly', 'AL6G11470' => 'aly', 'AL8G35950' => 'aly', 'AL8G35960' => 'aly', 'AL8G35970' => 'aly', 'Aqoxy1G00912' => 'aox', 'Aqoxy2G02253' => 'aox', 'Aqoxy2G02411' => 'aox', 'Aqoxy5G00485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BZ66YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K8ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM4FUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6BF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HFV7XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25JBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0YNNV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MAKK6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P70IT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP2Z6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V61LZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YWP64R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3S9AI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7PGHH' => 'arhy', 'AT2G32150' => 'ath', 'AT3G62040' => 'ath', 'AT5G02230' => 'ath', 'AT5G59480' => 'ath', 'AT5G59490' => 'ath', 'ATR0332G060' => 'atr', 'ATR0559G190' => 'atr', 'ATR0693G294' => 'atr', 'Atru.chr3.3975' => 'acertr', 'Atru.chr3.3976' => 'acertr', 'Atru.chr3.3977' => 'acertr', 'Atru.chr4.2498' => 'acertr', 'Atru.chr5.838' => 'acertr', 'Atru.chr8.1990' => 'acertr', 'Atru.chr8.1991' => 'acertr', 'Atru.chr8.1992' => 'acertr', 'AUR62001759' => 'cqu', 'AUR62009545' => 'cqu', 'AUR62010474' => 'cqu', 'AUR62025820' => 'cqu', 'AUR62030422' => 'cqu', 'AUR62033605' => 'cqu', 'AUR62038615' => 'cqu', 'AUR62041347' => 'cqu', 'BcaB01g04574' => 'bca', 'BcaB02g09263' => 'bca', 'BcaB02g10453' => 'bca', 'BcaB05g22513' => 'bca', 'BcaB08g36253' => 'bca', 'BcaB08g36254' => 'bca', 'BcaC01g06519' => 'bca', 'BcaC02g11889' => 'bca', 'BcaC03g14010' => 'bca', 'BcaC03g18439' => 'bca', 'BcaC04g19765' => 'bca', 'BcaC09g48432' => 'bca', 'BcaNung07302' => 'bca', 'BolC2t06040H' => 'bol', 'BolC2t07346H' => 'bol', 'BolC3t13817H' => 'bol', 'BolC4t22625H' => 'bol', 'BolC4t23297H' => 'bol', 'BolC8t51278H' => 'bol', 'BolC9t58050H' => 'bol', 'BolC9t58051H' => 'bol', 'BolC9t60163H' => 'bol', 'BraA02t04712Z' => 'bra', 'BraA02t05791Z' => 'bra', 'BraA03t10483Z' => 'bra', 'BraA05t19795Z' => 'bra', 'BraA05t20276Z' => 'bra', 'BraA09t40827Z' => 'bra', 'BraA10t43750Z' => 'bra', 'BraA10t43751Z' => 'bra', 'BraA10t45370Z' => 'bra', 'C02p00400' => 'bna', 'C02p12460' => 'bna', 'C03p13680' => 'bna', 'C04p10270' => 'bna', 'C04p17500' => 'bna', 'C08p37010' => 'bna', 'C09p51880' => 'bna', 'C09p51890' => 'bna', 'C09p74300' => 'bna', 'CAN.G179.26' => 'can', 'CAN.G3384.1' => 'can', 'CAN.G394.68' => 'can', 'CAN.G907.13' => 'can', 'CANSAT11G0012' => 'cansat', 'CANSAT25G1586' => 'cansat', 'CANSAT35G0735' => 'cansat', 'CANSAT54G0556' => 'cansat', 'CANSAT64G0356' => 'cansat', 'CANSAT78G2042' => 'cansat', 'CARHR125920' => 'chi', 'CARHR131910' => 'chi', 'CARHR172390' => 'chi', 'CARHR211140' => 'chi', 'CARHR285850' => 'chi', 'CARHR285860' => 'chi', 'Carub.0004s1347' => 'cru', 'Carub.0004s1960' => 'cru', 'Carub.0005s2880' => 'cru', 'Carub.0006s0107' => 'cru', 'Carub.0008s2015' => 'cru', 'Carub.0008s2016' => 'cru', 'Carub.0008s2017' => 'cru', 'Ca_01315_v3' => 'car', 'Ca_05063_v3' => 'car', 'Ca_10231_v3' => 'car', 'Ca_10913_v3' => 'car', 'Ca_19156_v3' => 'car', 'Ca_23644_v3' => 'car', 'Ca_26735_v3' => 'car', 'Cc01_g13130' => 'ccan', 'Cc02_g21690' => 'ccan', 'Cc03_g03600' => 'ccan', 'Cc06_g02510' => 'ccan', 'CDE02G1265' => 'cde', 'CDE05G0415' => 'cde', 'CDE08G1082' => 'cde', 'Cfa005780' => 'cfa', 'Cfa011522' => 'cfa', 'Cfa011523' => 'cfa', 'Cfa015627' => 'cfa', 'Cfa017359' => 'cfa', 'Ciclev10005687m.g' => 'ccl', 'Ciclev10012173m.g' => 'ccl', 'Ciclev10021621m.g' => 'ccl', 'Ciclev10028968m.g' => 'ccl', 'Ciclev10029907m.g' => 'ccl', 'CiPaw.01G164800' => 'cil', 'CiPaw.07G083700' => 'cil', 'CiPaw.07G127000' => 'cil', 'CiPaw.07G136900' => 'cil', 'CiPaw.08G081700' => 'cil', 'CiPaw.09G194600' => 'cil', 'CiPaw.10G146500' => 'cil', 'CiPaw.13G091500' => 'cil', 'CiPaw.13G091600' => 'cil', 'ClCG00G003390' => 'cla', 'ClCG01G007220' => 'cla', 'ClCG03G001370' => 'cla', 'ClCG04G008100' => 'cla', 'ClCG06G006110' => 'cla', 'ClCG06G006130' => 'cla', 'ClCG10G021210' => 'cla', 'COL.COLO4_07648' => 'col', 'COL.COLO4_07650' => 'col', 'COL.COLO4_07651' => 'col', 'COL.COLO4_14780' => 'col', 'COL.COLO4_18546' => 'col', 'COL.COLO4_18547' => 'col', 'COL.COLO4_23103' => 'col', 'COL.COLO4_30419' => 'col', 'COL.COLO4_34232' => 'col', 'Cpa.g.sc169.20' => 'cpa', 'Cpa.g.sc57.45' => 'cpa', 'Cpa.g.sc58.124' => 'cpa', 'Cpa.g.sc58.125' => 'cpa', 'Cpa.g.sc81.118' => 'cpa', 'Cpa.g.sc81.119' => 'cpa', 'Cre12.g524700' => 'cre', 'CsaV3_1G034430' => 'csa', 'CsaV3_1G034440' => 'csa', 'CsaV3_1G034450' => 'csa', 'CsaV3_3G034830' => 'csa', 'CsaV3_4G025090' => 'csa', 'CsaV3_5G018660' => 'csa', 'CsaV3_6G038160' => 'csa', 'CSS0003447' => 'camsi', 'CSS0017840' => 'camsi', 'CSS0019260' => 'camsi', 'CSS0040375' => 'camsi', 'CSS0042533' => 'camsi', 'DCAR_005960' => 'dca', 'DCAR_012104' => 'dca', 'DCAR_012105' => 'dca', 'DCAR_012293' => 'dca', 'DCAR_015632' => 'dca', 'DCAR_024602' => 'dca', 'DCAR_028752' => 'dca', 'Dinv06261' => 'din', 'Dinv13982' => 'din', 'Dinv17029' => 'din', 'Dinv18463' => 'din', 'Dinv33181' => 'din', 'Dinv35585' => 'din', 'Dinv37161' => 'din', 'Dinv42977' => 'din', 'Dinv43122' => 'din', 'Dinv44517' => 'din', 'Duzib093G0256' => 'dzi', 'Duzib106G1254' => 'dzi', 'Duzib128G1789' => 'dzi', 'Duzib133G0633' => 'dzi', 'Duzib138G0510' => 'dzi', 'Duzib150G1084' => 'dzi', 'Duzib168G0488' => 'dzi', 'Duzib168G1523' => 'dzi', 'Duzib170G0133' => 'dzi', 'ECA234G1433' => 'eca', 'ECA236G1432' => 'eca', 'ECA236G2256' => 'eca', 'ECA236G2365' => 'eca', 'ECA236G4830' => 'eca', 'ECA248G1505' => 'eca', 'EL10Ac3g06431' => 'bvu', 'EL10Ac5g12577' => 'bvu', 'EL10Ac6g13533' => 'bvu', 'EL10Ac7g16045' => 'bvu', 'Eucgr.A01281' => 'egr', 'Eucgr.B02326' => 'egr', 'Eucgr.H03532' => 'egr', 'Eucgr.K00553' => 'egr', 'Eucgr.K03116' => 'egr', 'FAN02G3963' => 'fan', 'FAN05G0438' => 'fan', 'FAN09G2434' => 'fan', 'FAN12G3984' => 'fan', 'FAN14G0798' => 'fan', 'FAN17G0652' => 'fan', 'FAN19G1988' => 'fan', 'FAN22G0632' => 'fan', 'FAN23G0387' => 'fan', 'FAN26G1323' => 'fan', 'FAN28G0666' => 'fan', 'FvH4_1g26080' => 'fve', 'FvH4_3g36780' => 'fve', 'FvH4_4g15270' => 'fve', 'FvH4_6g13490' => 'fve', 'Glyma.01G098700' => 'gma', 'Glyma.03G065900' => 'gma', 'Glyma.03G073754' => 'gma', 'Glyma.03G073758' => 'gma', 'Glyma.03G083200' => 'gma', 'Glyma.03G225500' => 'gma', 'Glyma.05G037766' => 'gma', 'Glyma.07G133500' => 'gma', 'Glyma.10G139400' => 'gma', 'Glyma.10G248900' => 'gma', 'Glyma.11G137800' => 'gma', 'Glyma.12G061300' => 'gma', 'Glyma.13G337900' => 'gma', 'Glyma.15G036600' => 'gma', 'Glyma.18G182800' => 'gma', 'Glyma.19G222500' => 'gma', 'Glyma.20G144800' => 'gma', 'Gohir.A01G222000' => 'ghi', 'Gohir.A03G044000' => 'ghi', 'Gohir.A03G044100' => 'ghi', 'Gohir.A04G083100' => 'ghi', 'Gohir.A07G127200' => 'ghi', 'Gohir.A07G132400' => 'ghi', 'Gohir.A08G000700' => 'ghi', 'Gohir.A11G327300' => 'ghi', 'Gohir.D01G211500' => 'ghi', 'Gohir.D03G123400' => 'ghi', 'Gohir.D03G123500' => 'ghi', 'Gohir.D04G121800' => 'ghi', 'Gohir.D07G131500' => 'ghi', 'Gohir.D07G136600' => 'ghi', 'Gohir.D08G011600' => 'ghi', 'Gohir.D11G346200' => 'ghi', 'Gorai.001G142800' => 'gra', 'Gorai.001G148700' => 'gra', 'Gorai.002G257300' => 'gra', 'Gorai.003G130000' => 'gra', 'Gorai.003G130100' => 'gra', 'Gorai.004G005300' => 'gra', 'Gorai.007G376500' => 'gra', 'Gorai.012G104700' => 'gra', 'GSVIVG01017946001' => 'vvi', 'GSVIVG01024928001' => 'vvi', 'GSVIVG01028227001' => 'vvi', 'GSVIVG01034151001' => 'vvi', 'HanXRQChr05g0135031' => 'han', 'HanXRQChr05g0135041' => 'han', 'HanXRQChr05g0140021' => 'han', 'HanXRQChr06g0178981' => 'han', 'HanXRQChr07g0188251' => 'han', 'HanXRQChr08g0235311' => 'han', 'HanXRQChr09g0271011' => 'han', 'HanXRQChr10g0293321' => 'han', 'HanXRQChr13g0388171' => 'han', 'Haze_00916' => 'cav', 'Haze_05063' => 'cav', 'Haze_20814' => 'cav', 'Haze_24128' => 'cav', 'Hma1.2p1_0745F.1_g212010' => 'hma', 'Hma1.2p1_0757F.1_g213260' => 'hma', 'Hma1.2p1_0936F.1_g238840' => 'hma', 'Hma1.2p1_1735F.1_g299890' => 'hma', 'Hma1.2p1_1861F.1_g305685' => 'hma', 'HPP92_003397' => 'vpl', 'HPP92_012597' => 'vpl', 'HPP92_015520' => 'vpl', 'HPP92_015539' => 'vpl', 'HPP92_020373' => 'vpl', 'Hund04938' => 'sun', 'Hund10677' => 'sun', 'Hund11033' => 'sun', 'Hund12155' => 'sun', 'Lalb_Chr01g0022551' => 'lal', 'Lalb_Chr03g0042341' => 'lal', 'Lalb_Chr07g0192931' => 'lal', 'Lalb_Chr12g0209551' => 'lal', 'Lalb_Chr19g0125251' => 'lal', 'Lalb_Chr19g0137891' => 'lal', 'Lalb_Chr21g0304641' => 'lal', 'Lalb_Chr21g0309881' => 'lal', 'Lj1A5T12' => 'lonja', 'Lj1C148G10' => 'lonja', 'Lj2A93T83' => 'lonja', 'Lj3A738G68' => 'lonja', 'Lj3C966T1' => 'lonja', 'Lj3g0018958' => 'lja', 'Lj3g0021831' => 'lja', 'Lj3g0025443' => 'lja', 'Lj4g0026809' => 'lja', 'Lj5g0012558' => 'lja', 'Lj5g0021586' => 'lja', 'Lsat_1_v5_gn_5_156840' => 'lsa', 'Lsat_1_v5_gn_8_73460' => 'lsa', 'Lsat_1_v5_gn_8_73481' => 'lsa', 'Lsat_1_v5_gn_9_31601' => 'lsa', 'Lsat_1_v5_gn_9_77320' => 'lsa', 'Manes.01G171300' => 'mes', 'Manes.01G171400' => 'mes', 'Manes.01G236100' => 'mes', 'Manes.02G130500' => 'mes', 'Manes.02G130600' => 'mes', 'Manes.03G180200' => 'mes', 'Manes.05G007000' => 'mes', 'Manes.08G084400' => 'mes', 'Manes.09G092600' => 'mes', 'Manes.15G027900' => 'mes', 'MBI04_g40948_MAGBIO' => 'mbi', 'MBI14_g12123_MAGBIO' => 'mbi', 'MBI18_g28915_MAGBIO' => 'mbi', 'MCO09G053' => 'mco', 'MCO11G782' => 'mco', 'MCO15G215' => 'mco', 'MD03G1088500' => 'mdo', 'MD03G1088600' => 'mdo', 'MD04G1130800' => 'mdo', 'MD09G1291700' => 'mdo', 'MD11G1097500' => 'mdo', 'MD11G1097600' => 'mdo', 'MD12G1143900' => 'mdo', 'MD13G1191400' => 'mdo', 'MD16G1191500' => 'mdo', 'Medtr1g085570' => 'mtr', 'Medtr1g104610' => 'mtr', 'Medtr2g097520' => 'mtr', 'Medtr4g021800' => 'mtr', 'Medtr4g021825' => 'mtr', 'Medtr4g064270' => 'mtr', 'Medtr4g064380' => 'mtr', 'Medtr7g062150' => 'mtr', 'MELO3C003138.2' => 'cme', 'MELO3C005187.2' => 'cme', 'MELO3C009252.2' => 'cme', 'MELO3C014481.2' => 'cme', 'MELO3C020616.2' => 'cme', 'MELO3C020617.2' => 'cme', 'MELO3C020618.2' => 'cme', 'Migut.G00328' => 'egut', 'Migut.J00320' => 'egut', 'Migut.L01000' => 'egut', 'Migut.L01953' => 'egut', 'MSTRG.10253' => 'ama', 'MSTRG.19077' => 'ama', 'MSTRG.26780' => 'ama', 'MSTRG.4023' => 'ama', 'MSTRG.5655' => 'ama', 'MSTRG.9992' => 'ama', 'Nitab4.5_0000043g0310' => 'nta', 'Nitab4.5_0000463g0080' => 'nta', 'Nitab4.5_0000705g0170' => 'nta', 'Nitab4.5_0001326g0060' => 'nta', 'Nitab4.5_0001628g0030' => 'nta', 'Nitab4.5_0002103g0110' => 'nta', 'Nitab4.5_0002946g0030' => 'nta', 'Nitab4.5_0004639g0030' => 'nta', 'Nn2g11149' => 'nnu', 'Nn2g13389' => 'nnu', 'Nn4g25326' => 'nnu', 'Nn4g26290' => 'nnu', 'Nn5g29865' => 'nnu', 'Oeu004163.1' => 'oeu', 'Oeu006901.1' => 'oeu', 'Oeu010096.1' => 'oeu', 'Oeu024340.1' => 'oeu', 'Oeu048369.1' => 'oeu', 'Os01g0973000' => 'osa', 'Os03g0273800' => 'osa', 'Os03g0701200' => 'osa', 'Os03g0834050' => 'osa', 'Os07g0634400' => 'osa', 'Peaxi162Scf00092g01414' => 'pax', 'Peaxi162Scf00165g00818' => 'pax', 'Peaxi162Scf00309g00516' => 'pax', 'Peaxi162Scf00774g00218' => 'pax', 'PGR004G1824' => 'pgr', 'PGR004G2606' => 'pgr', 'PGR031G2716' => 'pgr', 'PGR102G2460' => 'pgr', 'PGR142G2599' => 'pgr', 'PGSC0003DMG400000843' => 'stu', 'PGSC0003DMG400008829' => 'stu', 'PGSC0003DMG400030418' => 'stu', 'PGSC0003DMG400031834' => 'stu', 'PGSC0003DMG401028300' => 'stu', 'PGSC0003DMG402028300' => 'stu', 'Phvul.001G219300' => 'pvu', 'Phvul.007G056000' => 'pvu', 'Phvul.007G208000' => 'pvu', 'Phvul.008G119500' => 'pvu', 'Phvul.010G011200' => 'pvu', 'Phvul.010G014800' => 'pvu', 'Phvul.011G062900' => 'pvu', 'Phvul.L007043' => 'pvu', 'Potri.001G242300' => 'ptr', 'Potri.002G185300' => 'ptr', 'Potri.006G086900' => 'ptr', 'Potri.008G151700' => 'ptr', 'Potri.009G033500' => 'ptr', 'Potri.010G089300' => 'ptr', 'Potri.014G110800' => 'ptr', 'Pp3c27_8130' => 'ppa', 'Pp3c6_27410' => 'ppa', 'PRCOL_00001659' => 'pco', 'PRCOL_00001927' => 'pco', 'PRCOL_00003649' => 'pco', 'Prupe.1G011600' => 'ppe', 'Prupe.3G000800' => 'ppe', 'Prupe.3G001100' => 'ppe', 'Prupe.6G072700' => 'ppe', 'Prupe.6G072800' => 'ppe', 'Prupe.6G257300' => 'ppe', 'Prupe.8G033000' => 'ppe', 'Psat0s2633g0080' => 'psa', 'Psat0s3396g0080' => 'psa', 'Psat0s3396g0200' => 'psa', 'Psat3g139080' => 'psa', 'Psat5g285080' => 'psa', 'Psat6g157760' => 'psa', 'Psat6g208440' => 'psa', 'Psat7g215320' => 'psa', 'Psat7g215400' => 'psa', 'Psat7g235600' => 'psa', 'Psat7g235760' => 'psa', 'PSO063G4603' => 'pso', 'PSO210G0182' => 'pso', 'PSO210G0196' => 'pso', 'PSO339G0394' => 'pso', 'PSO339G4127' => 'pso', 'PSO513G0064' => 'pso', 'PSO761G0079' => 'pso', 'QL01p031003' => 'qlo', 'QL01p031078' => 'qlo', 'QL06p003004' => 'qlo', 'QL07p048731' => 'qlo', 'QL09p037427' => 'qlo', 'RcHm_v2.0_Chr3g0466361' => 'rch', 'RcHm_v2.0_Chr3g0485571' => 'rch', 'RcHm_v2.0_Chr4g0416551' => 'rch', 'RcHm_v2.0_Chr5g0065831' => 'rch', 'Rhsim01G0230500' => 'rsi', 'Rhsim05G0194000' => 'rsi', 'Rhsim08G0250400' => 'rsi', 'Sabra02G0131000' => 'sbr', 'Sabra06G0066300' => 'sbr', 'Sabra08G0115500' => 'sbr', 'Sabra09G0023900' => 'sbr', 'Sabra10G0054000' => 'sbr', 'Sabra14G0081500' => 'sbr', 'Sabra16G0147100' => 'sbr', 'SalBow2G2957' => 'sbo', 'SalBow4G3320' => 'sbo', 'SalBow8G1894' => 'sbo', 'Sc07g0007950' => 'sci', 'Sc12g0001360' => 'sci', 'Sc13g0004330' => 'sci', 'Sc20g0005010' => 'sci', 'Sed0000361' => 'sed', 'Sed0001706' => 'sed', 'Sed0002422' => 'sed', 'Sed0004029' => 'sed', 'Sed0004602' => 'sed', 'Sed0004943' => 'sed', 'Sed0008646' => 'sed', 'Sed0023313' => 'sed', 'Sed0024843' => 'sed', 'SEGI_00081' => 'sgi', 'SEGI_00947' => 'sgi', 'SEGI_04046' => 'sgi', 'SEGI_06880' => 'sgi', 'SEGI_09736' => 'sgi', 'SEGI_12741' => 'sgi', 'SEGI_14530' => 'sgi', 'SEGI_20705' => 'sgi', 'SEGI_26088' => 'sgi', 'SEGI_28323' => 'sgi', 'SEGI_33343' => 'sgi', 'SGA_v2.0_scaffold126G33775' => 'sas', 'SGA_v2.0_scaffold2G01337' => 'sas', 'SGA_v2.0_scaffold38G15006' => 'sas', 'SGA_v2.0_scaffold39G15264' => 'sas', 'SGA_v2.0_scaffold453G51880' => 'sas', 'SHI12696' => 'shi', 'SMO367G1096' => 'smo', 'Solyc01g068630.3' => 'sly', 'Solyc05g011880.3' => 'sly', 'Solyc06g076300.3' => 'sly', 'Solyc09g010940.4' => 'sly', 'Solyc09g075890.3' => 'sly', 'Sopen01g030560' => 'spe', 'Sopen05g006630' => 'spe', 'Sopen06g032720' => 'spe', 'Sopen09g005660' => 'spe', 'Sopen09g030690' => 'spe', 'Sp4g14540' => 'spa', 'Sp4g20030' => 'spa', 'Sp5g01320' => 'spa', 'Sp6g21170' => 'spa', 'Sp6g21180' => 'spa', 'Sp6g21190' => 'spa', 'Sp6g40220' => 'spa', 'TAR362G0122' => 'tar', 'TAR362G1338' => 'tar', 'TAR369G0590' => 'tar', 'TAR371G0824' => 'tar', 'TAR622G1429' => 'tar', 'TAR623G0734' => 'tar', 'TAR625G0441' => 'tar', 'TAR629G0976' => 'tar', 'TAR633G1195' => 'tar', 'TAR636G2660' => 'tar', 'THA.LOC104799440' => 'tha', 'THA.LOC104800966' => 'tha', 'THA.LOC104806559' => 'tha', 'THA.LOC104810765' => 'tha', 'THA.LOC104816266' => 'tha', 'THA.LOC104817419' => 'tha', 'THA.LOC104827021' => 'tha', 'Thecc.01G327400' => 'tca', 'Thecc.04G229200' => 'tca', 'Thecc.05G037400' => 'tca', 'Thecc.09G318600' => 'tca', 'Thecc.09G318700' => 'tca', 'Thhalv10006238m.g' => 'esa', 'Thhalv10014321m.g' => 'esa', 'Thhalv10014335m.g' => 'esa', 'Thhalv10015826m.g' => 'esa', 'Thhalv10017107m.g' => 'esa', 'Thhalv10017180m.g' => 'esa', 'Thhalv10029339m.g' => 'esa', 'TPR.G1699' => 'tpr', 'TPR.G23609' => 'tpr', 'TPR.G3081' => 'tpr', 'TPR.G40397' => 'tpr', 'TPR.G5522' => 'tpr', 'TPR.G5618' => 'tpr', 'TPR.G5626' => 'tpr', 'TWI09G1632' => 'twi', 'TWI23G1230' => 'twi', 'TWI53G1064' => 'twi', 'TWI59G0751' => 'twi', 'TWI74G0947' => 'twi', 'TWI77G0337' => 'twi', 'TWI79G1254' => 'twi', 'unitig_0.g2341' => 'ugi', 'unitig_26.g10006' => 'ugi', 'unitig_26.g10008' => 'ugi', 'unitig_26.g9192' => 'ugi', 'vmacro14547' => 'vma', 'vmacro15333' => 'vma', 'vmacro18743' => 'vma', 'vmacro20166' => 'vma', 'VMungo0331G0523' => 'vmu', 'VMungo0331G1202' => 'vmu', 'VMungo0720G1228' => 'vmu', 'VMungo0720G1514' => 'vmu', 'VMungo1080G0169' => 'vmu', 'VMungo1127G1475' => 'vmu', 'VMungo1383G1208' => 'vmu', 'VMungo1383G1698' => 'vmu', 'Zm00001eb012270' => 'zma', 'Zm00001eb054100' => 'zma', 'Zm00001eb063350' => 'zma', 'Zm00001eb328560' => 'zma', 'Zm00001eb342820' => 'zma', 'Zm00001eb362210' => 'zma', 'Zm00001eb397730' => 'zma', 'Zm00001eb399750' => 'zma' ) $gf_id = 'HOM05D000959' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000959' ) $data_identifier = 'HOM05D000959' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 5, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 5, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 10, 'mbi' => (int) 3, 'mco' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 2, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 3, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 11, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399750' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000959', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '622', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p07100' => 'bna', 'A03p11720' => 'bna', 'A05p08300' => 'bna', 'A05p13380' => 'bna', 'A09p54130' => 'bna', 'A10p16690' => 'bna', 'A10p16700' => 'bna', 'A10p33390' => 'bna', 'Aa31LG10G16020' => 'aar', 'Aa31LG1G11810' => 'aar', 'Aa31LG1G11830' => 'aar', 'Aa31LG1G22510' => 'aar', 'Aa31LG5G4890' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5793' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2310' => 'aag', 'Actinidia08499' => 'ach', 'Actinidia11262' => 'ach', 'Actinidia23926' => 'ach', 'Actinidia34420' => 'ach', 'Actinidia36970' => 'ach', 'Ah.02g111220' => 'amhyb', 'Ah.15g097750' => 'amhyb', 'AL4G27500' => 'aly', 'AL6G11470' => 'aly', 'AL8G35950' => 'aly', 'AL8G35960' => 'aly', 'AL8G35970' => 'aly', 'Aqoxy1G00912' => 'aox', 'Aqoxy2G02253' => 'aox', 'Aqoxy2G02411' => 'aox', 'Aqoxy5G00485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BZ66YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K8ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM4FUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6BF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HFV7XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25JBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0YNNV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MAKK6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P70IT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP2Z6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V61LZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YWP64R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3S9AI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7PGHH' => 'arhy', 'AT2G32150' => 'ath', 'AT3G62040' => 'ath', 'AT5G02230' => 'ath', 'AT5G59480' => 'ath', 'AT5G59490' => 'ath', 'ATR0332G060' => 'atr', 'ATR0559G190' => 'atr', 'ATR0693G294' => 'atr', 'Atru.chr3.3975' => 'acertr', 'Atru.chr3.3976' => 'acertr', 'Atru.chr3.3977' => 'acertr', 'Atru.chr4.2498' => 'acertr', 'Atru.chr5.838' => 'acertr', 'Atru.chr8.1990' => 'acertr', 'Atru.chr8.1991' => 'acertr', 'Atru.chr8.1992' => 'acertr', 'AUR62001759' => 'cqu', 'AUR62009545' => 'cqu', 'AUR62010474' => 'cqu', 'AUR62025820' => 'cqu', 'AUR62030422' => 'cqu', 'AUR62033605' => 'cqu', 'AUR62038615' => 'cqu', 'AUR62041347' => 'cqu', 'BcaB01g04574' => 'bca', 'BcaB02g09263' => 'bca', 'BcaB02g10453' => 'bca', 'BcaB05g22513' => 'bca', 'BcaB08g36253' => 'bca', 'BcaB08g36254' => 'bca', 'BcaC01g06519' => 'bca', 'BcaC02g11889' => 'bca', 'BcaC03g14010' => 'bca', 'BcaC03g18439' => 'bca', 'BcaC04g19765' => 'bca', 'BcaC09g48432' => 'bca', 'BcaNung07302' => 'bca', 'BolC2t06040H' => 'bol', 'BolC2t07346H' => 'bol', 'BolC3t13817H' => 'bol', 'BolC4t22625H' => 'bol', 'BolC4t23297H' => 'bol', 'BolC8t51278H' => 'bol', 'BolC9t58050H' => 'bol', 'BolC9t58051H' => 'bol', 'BolC9t60163H' => 'bol', 'BraA02t04712Z' => 'bra', 'BraA02t05791Z' => 'bra', 'BraA03t10483Z' => 'bra', 'BraA05t19795Z' => 'bra', 'BraA05t20276Z' => 'bra', 'BraA09t40827Z' => 'bra', 'BraA10t43750Z' => 'bra', 'BraA10t43751Z' => 'bra', 'BraA10t45370Z' => 'bra', 'C02p00400' => 'bna', 'C02p12460' => 'bna', 'C03p13680' => 'bna', 'C04p10270' => 'bna', 'C04p17500' => 'bna', 'C08p37010' => 'bna', 'C09p51880' => 'bna', 'C09p51890' => 'bna', 'C09p74300' => 'bna', 'CAN.G179.26' => 'can', 'CAN.G3384.1' => 'can', 'CAN.G394.68' => 'can', 'CAN.G907.13' => 'can', 'CANSAT11G0012' => 'cansat', 'CANSAT25G1586' => 'cansat', 'CANSAT35G0735' => 'cansat', 'CANSAT54G0556' => 'cansat', 'CANSAT64G0356' => 'cansat', 'CANSAT78G2042' => 'cansat', 'CARHR125920' => 'chi', 'CARHR131910' => 'chi', 'CARHR172390' => 'chi', 'CARHR211140' => 'chi', 'CARHR285850' => 'chi', 'CARHR285860' => 'chi', 'Carub.0004s1347' => 'cru', 'Carub.0004s1960' => 'cru', 'Carub.0005s2880' => 'cru', 'Carub.0006s0107' => 'cru', 'Carub.0008s2015' => 'cru', 'Carub.0008s2016' => 'cru', 'Carub.0008s2017' => 'cru', 'Ca_01315_v3' => 'car', 'Ca_05063_v3' => 'car', 'Ca_10231_v3' => 'car', 'Ca_10913_v3' => 'car', 'Ca_19156_v3' => 'car', 'Ca_23644_v3' => 'car', 'Ca_26735_v3' => 'car', 'Cc01_g13130' => 'ccan', 'Cc02_g21690' => 'ccan', 'Cc03_g03600' => 'ccan', 'Cc06_g02510' => 'ccan', 'CDE02G1265' => 'cde', 'CDE05G0415' => 'cde', 'CDE08G1082' => 'cde', 'Cfa005780' => 'cfa', 'Cfa011522' => 'cfa', 'Cfa011523' => 'cfa', 'Cfa015627' => 'cfa', 'Cfa017359' => 'cfa', 'Ciclev10005687m.g' => 'ccl', 'Ciclev10012173m.g' => 'ccl', 'Ciclev10021621m.g' => 'ccl', 'Ciclev10028968m.g' => 'ccl', 'Ciclev10029907m.g' => 'ccl', 'CiPaw.01G164800' => 'cil', 'CiPaw.07G083700' => 'cil', 'CiPaw.07G127000' => 'cil', 'CiPaw.07G136900' => 'cil', 'CiPaw.08G081700' => 'cil', 'CiPaw.09G194600' => 'cil', 'CiPaw.10G146500' => 'cil', 'CiPaw.13G091500' => 'cil', 'CiPaw.13G091600' => 'cil', 'ClCG00G003390' => 'cla', 'ClCG01G007220' => 'cla', 'ClCG03G001370' => 'cla', 'ClCG04G008100' => 'cla', 'ClCG06G006110' => 'cla', 'ClCG06G006130' => 'cla', 'ClCG10G021210' => 'cla', 'COL.COLO4_07648' => 'col', 'COL.COLO4_07650' => 'col', 'COL.COLO4_07651' => 'col', 'COL.COLO4_14780' => 'col', 'COL.COLO4_18546' => 'col', 'COL.COLO4_18547' => 'col', 'COL.COLO4_23103' => 'col', 'COL.COLO4_30419' => 'col', 'COL.COLO4_34232' => 'col', 'Cpa.g.sc169.20' => 'cpa', 'Cpa.g.sc57.45' => 'cpa', 'Cpa.g.sc58.124' => 'cpa', 'Cpa.g.sc58.125' => 'cpa', 'Cpa.g.sc81.118' => 'cpa', 'Cpa.g.sc81.119' => 'cpa', 'Cre12.g524700' => 'cre', 'CsaV3_1G034430' => 'csa', 'CsaV3_1G034440' => 'csa', 'CsaV3_1G034450' => 'csa', 'CsaV3_3G034830' => 'csa', 'CsaV3_4G025090' => 'csa', 'CsaV3_5G018660' => 'csa', 'CsaV3_6G038160' => 'csa', 'CSS0003447' => 'camsi', 'CSS0017840' => 'camsi', 'CSS0019260' => 'camsi', 'CSS0040375' => 'camsi', 'CSS0042533' => 'camsi', 'DCAR_005960' => 'dca', 'DCAR_012104' => 'dca', 'DCAR_012105' => 'dca', 'DCAR_012293' => 'dca', 'DCAR_015632' => 'dca', 'DCAR_024602' => 'dca', 'DCAR_028752' => 'dca', 'Dinv06261' => 'din', 'Dinv13982' => 'din', 'Dinv17029' => 'din', 'Dinv18463' => 'din', 'Dinv33181' => 'din', 'Dinv35585' => 'din', 'Dinv37161' => 'din', 'Dinv42977' => 'din', 'Dinv43122' => 'din', 'Dinv44517' => 'din', 'Duzib093G0256' => 'dzi', 'Duzib106G1254' => 'dzi', 'Duzib128G1789' => 'dzi', 'Duzib133G0633' => 'dzi', 'Duzib138G0510' => 'dzi', 'Duzib150G1084' => 'dzi', 'Duzib168G0488' => 'dzi', 'Duzib168G1523' => 'dzi', 'Duzib170G0133' => 'dzi', 'ECA234G1433' => 'eca', 'ECA236G1432' => 'eca', 'ECA236G2256' => 'eca', 'ECA236G2365' => 'eca', 'ECA236G4830' => 'eca', 'ECA248G1505' => 'eca', 'EL10Ac3g06431' => 'bvu', 'EL10Ac5g12577' => 'bvu', 'EL10Ac6g13533' => 'bvu', 'EL10Ac7g16045' => 'bvu', 'Eucgr.A01281' => 'egr', 'Eucgr.B02326' => 'egr', 'Eucgr.H03532' => 'egr', 'Eucgr.K00553' => 'egr', 'Eucgr.K03116' => 'egr', 'FAN02G3963' => 'fan', 'FAN05G0438' => 'fan', 'FAN09G2434' => 'fan', 'FAN12G3984' => 'fan', 'FAN14G0798' => 'fan', 'FAN17G0652' => 'fan', 'FAN19G1988' => 'fan', 'FAN22G0632' => 'fan', 'FAN23G0387' => 'fan', 'FAN26G1323' => 'fan', 'FAN28G0666' => 'fan', 'FvH4_1g26080' => 'fve', 'FvH4_3g36780' => 'fve', 'FvH4_4g15270' => 'fve', 'FvH4_6g13490' => 'fve', 'Glyma.01G098700' => 'gma', 'Glyma.03G065900' => 'gma', 'Glyma.03G073754' => 'gma', 'Glyma.03G073758' => 'gma', 'Glyma.03G083200' => 'gma', 'Glyma.03G225500' => 'gma', 'Glyma.05G037766' => 'gma', 'Glyma.07G133500' => 'gma', 'Glyma.10G139400' => 'gma', 'Glyma.10G248900' => 'gma', 'Glyma.11G137800' => 'gma', 'Glyma.12G061300' => 'gma', 'Glyma.13G337900' => 'gma', 'Glyma.15G036600' => 'gma', 'Glyma.18G182800' => 'gma', 'Glyma.19G222500' => 'gma', 'Glyma.20G144800' => 'gma', 'Gohir.A01G222000' => 'ghi', 'Gohir.A03G044000' => 'ghi', 'Gohir.A03G044100' => 'ghi', 'Gohir.A04G083100' => 'ghi', 'Gohir.A07G127200' => 'ghi', 'Gohir.A07G132400' => 'ghi', 'Gohir.A08G000700' => 'ghi', 'Gohir.A11G327300' => 'ghi', 'Gohir.D01G211500' => 'ghi', 'Gohir.D03G123400' => 'ghi', 'Gohir.D03G123500' => 'ghi', 'Gohir.D04G121800' => 'ghi', 'Gohir.D07G131500' => 'ghi', 'Gohir.D07G136600' => 'ghi', 'Gohir.D08G011600' => 'ghi', 'Gohir.D11G346200' => 'ghi', 'Gorai.001G142800' => 'gra', 'Gorai.001G148700' => 'gra', 'Gorai.002G257300' => 'gra', 'Gorai.003G130000' => 'gra', 'Gorai.003G130100' => 'gra', 'Gorai.004G005300' => 'gra', 'Gorai.007G376500' => 'gra', 'Gorai.012G104700' => 'gra', 'GSVIVG01017946001' => 'vvi', 'GSVIVG01024928001' => 'vvi', 'GSVIVG01028227001' => 'vvi', 'GSVIVG01034151001' => 'vvi', 'HanXRQChr05g0135031' => 'han', 'HanXRQChr05g0135041' => 'han', 'HanXRQChr05g0140021' => 'han', 'HanXRQChr06g0178981' => 'han', 'HanXRQChr07g0188251' => 'han', 'HanXRQChr08g0235311' => 'han', 'HanXRQChr09g0271011' => 'han', 'HanXRQChr10g0293321' => 'han', 'HanXRQChr13g0388171' => 'han', 'Haze_00916' => 'cav', 'Haze_05063' => 'cav', 'Haze_20814' => 'cav', 'Haze_24128' => 'cav', 'Hma1.2p1_0745F.1_g212010' => 'hma', 'Hma1.2p1_0757F.1_g213260' => 'hma', 'Hma1.2p1_0936F.1_g238840' => 'hma', 'Hma1.2p1_1735F.1_g299890' => 'hma', 'Hma1.2p1_1861F.1_g305685' => 'hma', 'HPP92_003397' => 'vpl', 'HPP92_012597' => 'vpl', 'HPP92_015520' => 'vpl', 'HPP92_015539' => 'vpl', 'HPP92_020373' => 'vpl', 'Hund04938' => 'sun', 'Hund10677' => 'sun', 'Hund11033' => 'sun', 'Hund12155' => 'sun', 'Lalb_Chr01g0022551' => 'lal', 'Lalb_Chr03g0042341' => 'lal', 'Lalb_Chr07g0192931' => 'lal', 'Lalb_Chr12g0209551' => 'lal', 'Lalb_Chr19g0125251' => 'lal', 'Lalb_Chr19g0137891' => 'lal', 'Lalb_Chr21g0304641' => 'lal', 'Lalb_Chr21g0309881' => 'lal', 'Lj1A5T12' => 'lonja', 'Lj1C148G10' => 'lonja', 'Lj2A93T83' => 'lonja', 'Lj3A738G68' => 'lonja', 'Lj3C966T1' => 'lonja', 'Lj3g0018958' => 'lja', 'Lj3g0021831' => 'lja', 'Lj3g0025443' => 'lja', 'Lj4g0026809' => 'lja', 'Lj5g0012558' => 'lja', 'Lj5g0021586' => 'lja', 'Lsat_1_v5_gn_5_156840' => 'lsa', 'Lsat_1_v5_gn_8_73460' => 'lsa', 'Lsat_1_v5_gn_8_73481' => 'lsa', 'Lsat_1_v5_gn_9_31601' => 'lsa', 'Lsat_1_v5_gn_9_77320' => 'lsa', 'Manes.01G171300' => 'mes', 'Manes.01G171400' => 'mes', 'Manes.01G236100' => 'mes', 'Manes.02G130500' => 'mes', 'Manes.02G130600' => 'mes', 'Manes.03G180200' => 'mes', 'Manes.05G007000' => 'mes', 'Manes.08G084400' => 'mes', 'Manes.09G092600' => 'mes', 'Manes.15G027900' => 'mes', 'MBI04_g40948_MAGBIO' => 'mbi', 'MBI14_g12123_MAGBIO' => 'mbi', 'MBI18_g28915_MAGBIO' => 'mbi', 'MCO09G053' => 'mco', 'MCO11G782' => 'mco', 'MCO15G215' => 'mco', 'MD03G1088500' => 'mdo', 'MD03G1088600' => 'mdo', 'MD04G1130800' => 'mdo', 'MD09G1291700' => 'mdo', 'MD11G1097500' => 'mdo', 'MD11G1097600' => 'mdo', 'MD12G1143900' => 'mdo', 'MD13G1191400' => 'mdo', 'MD16G1191500' => 'mdo', 'Medtr1g085570' => 'mtr', 'Medtr1g104610' => 'mtr', 'Medtr2g097520' => 'mtr', 'Medtr4g021800' => 'mtr', 'Medtr4g021825' => 'mtr', 'Medtr4g064270' => 'mtr', 'Medtr4g064380' => 'mtr', 'Medtr7g062150' => 'mtr', 'MELO3C003138.2' => 'cme', 'MELO3C005187.2' => 'cme', 'MELO3C009252.2' => 'cme', 'MELO3C014481.2' => 'cme', 'MELO3C020616.2' => 'cme', 'MELO3C020617.2' => 'cme', 'MELO3C020618.2' => 'cme', 'Migut.G00328' => 'egut', 'Migut.J00320' => 'egut', 'Migut.L01000' => 'egut', 'Migut.L01953' => 'egut', 'MSTRG.10253' => 'ama', 'MSTRG.19077' => 'ama', 'MSTRG.26780' => 'ama', 'MSTRG.4023' => 'ama', 'MSTRG.5655' => 'ama', 'MSTRG.9992' => 'ama', 'Nitab4.5_0000043g0310' => 'nta', 'Nitab4.5_0000463g0080' => 'nta', 'Nitab4.5_0000705g0170' => 'nta', 'Nitab4.5_0001326g0060' => 'nta', 'Nitab4.5_0001628g0030' => 'nta', 'Nitab4.5_0002103g0110' => 'nta', 'Nitab4.5_0002946g0030' => 'nta', 'Nitab4.5_0004639g0030' => 'nta', 'Nn2g11149' => 'nnu', 'Nn2g13389' => 'nnu', 'Nn4g25326' => 'nnu', 'Nn4g26290' => 'nnu', 'Nn5g29865' => 'nnu', 'Oeu004163.1' => 'oeu', 'Oeu006901.1' => 'oeu', 'Oeu010096.1' => 'oeu', 'Oeu024340.1' => 'oeu', 'Oeu048369.1' => 'oeu', 'Os01g0973000' => 'osa', 'Os03g0273800' => 'osa', 'Os03g0701200' => 'osa', 'Os03g0834050' => 'osa', 'Os07g0634400' => 'osa', 'Peaxi162Scf00092g01414' => 'pax', 'Peaxi162Scf00165g00818' => 'pax', 'Peaxi162Scf00309g00516' => 'pax', 'Peaxi162Scf00774g00218' => 'pax', 'PGR004G1824' => 'pgr', 'PGR004G2606' => 'pgr', 'PGR031G2716' => 'pgr', 'PGR102G2460' => 'pgr', 'PGR142G2599' => 'pgr', 'PGSC0003DMG400000843' => 'stu', 'PGSC0003DMG400008829' => 'stu', 'PGSC0003DMG400030418' => 'stu', 'PGSC0003DMG400031834' => 'stu', 'PGSC0003DMG401028300' => 'stu', 'PGSC0003DMG402028300' => 'stu', 'Phvul.001G219300' => 'pvu', 'Phvul.007G056000' => 'pvu', 'Phvul.007G208000' => 'pvu', 'Phvul.008G119500' => 'pvu', 'Phvul.010G011200' => 'pvu', 'Phvul.010G014800' => 'pvu', 'Phvul.011G062900' => 'pvu', 'Phvul.L007043' => 'pvu', 'Potri.001G242300' => 'ptr', 'Potri.002G185300' => 'ptr', 'Potri.006G086900' => 'ptr', 'Potri.008G151700' => 'ptr', 'Potri.009G033500' => 'ptr', 'Potri.010G089300' => 'ptr', 'Potri.014G110800' => 'ptr', 'Pp3c27_8130' => 'ppa', 'Pp3c6_27410' => 'ppa', 'PRCOL_00001659' => 'pco', 'PRCOL_00001927' => 'pco', 'PRCOL_00003649' => 'pco', 'Prupe.1G011600' => 'ppe', 'Prupe.3G000800' => 'ppe', 'Prupe.3G001100' => 'ppe', 'Prupe.6G072700' => 'ppe', 'Prupe.6G072800' => 'ppe', 'Prupe.6G257300' => 'ppe', 'Prupe.8G033000' => 'ppe', 'Psat0s2633g0080' => 'psa', 'Psat0s3396g0080' => 'psa', 'Psat0s3396g0200' => 'psa', 'Psat3g139080' => 'psa', 'Psat5g285080' => 'psa', 'Psat6g157760' => 'psa', 'Psat6g208440' => 'psa', 'Psat7g215320' => 'psa', 'Psat7g215400' => 'psa', 'Psat7g235600' => 'psa', 'Psat7g235760' => 'psa', 'PSO063G4603' => 'pso', 'PSO210G0182' => 'pso', 'PSO210G0196' => 'pso', 'PSO339G0394' => 'pso', 'PSO339G4127' => 'pso', 'PSO513G0064' => 'pso', 'PSO761G0079' => 'pso', 'QL01p031003' => 'qlo', 'QL01p031078' => 'qlo', 'QL06p003004' => 'qlo', 'QL07p048731' => 'qlo', 'QL09p037427' => 'qlo', 'RcHm_v2.0_Chr3g0466361' => 'rch', 'RcHm_v2.0_Chr3g0485571' => 'rch', 'RcHm_v2.0_Chr4g0416551' => 'rch', 'RcHm_v2.0_Chr5g0065831' => 'rch', 'Rhsim01G0230500' => 'rsi', 'Rhsim05G0194000' => 'rsi', 'Rhsim08G0250400' => 'rsi', 'Sabra02G0131000' => 'sbr', 'Sabra06G0066300' => 'sbr', 'Sabra08G0115500' => 'sbr', 'Sabra09G0023900' => 'sbr', 'Sabra10G0054000' => 'sbr', 'Sabra14G0081500' => 'sbr', 'Sabra16G0147100' => 'sbr', 'SalBow2G2957' => 'sbo', 'SalBow4G3320' => 'sbo', 'SalBow8G1894' => 'sbo', 'Sc07g0007950' => 'sci', 'Sc12g0001360' => 'sci', 'Sc13g0004330' => 'sci', 'Sc20g0005010' => 'sci', 'Sed0000361' => 'sed', 'Sed0001706' => 'sed', 'Sed0002422' => 'sed', 'Sed0004029' => 'sed', 'Sed0004602' => 'sed', 'Sed0004943' => 'sed', 'Sed0008646' => 'sed', 'Sed0023313' => 'sed', 'Sed0024843' => 'sed', 'SEGI_00081' => 'sgi', 'SEGI_00947' => 'sgi', 'SEGI_04046' => 'sgi', 'SEGI_06880' => 'sgi', 'SEGI_09736' => 'sgi', 'SEGI_12741' => 'sgi', 'SEGI_14530' => 'sgi', 'SEGI_20705' => 'sgi', 'SEGI_26088' => 'sgi', 'SEGI_28323' => 'sgi', 'SEGI_33343' => 'sgi', 'SGA_v2.0_scaffold126G33775' => 'sas', 'SGA_v2.0_scaffold2G01337' => 'sas', 'SGA_v2.0_scaffold38G15006' => 'sas', 'SGA_v2.0_scaffold39G15264' => 'sas', 'SGA_v2.0_scaffold453G51880' => 'sas', 'SHI12696' => 'shi', 'SMO367G1096' => 'smo', 'Solyc01g068630.3' => 'sly', 'Solyc05g011880.3' => 'sly', 'Solyc06g076300.3' => 'sly', 'Solyc09g010940.4' => 'sly', 'Solyc09g075890.3' => 'sly', 'Sopen01g030560' => 'spe', 'Sopen05g006630' => 'spe', 'Sopen06g032720' => 'spe', 'Sopen09g005660' => 'spe', 'Sopen09g030690' => 'spe', 'Sp4g14540' => 'spa', 'Sp4g20030' => 'spa', 'Sp5g01320' => 'spa', 'Sp6g21170' => 'spa', 'Sp6g21180' => 'spa', 'Sp6g21190' => 'spa', 'Sp6g40220' => 'spa', 'TAR362G0122' => 'tar', 'TAR362G1338' => 'tar', 'TAR369G0590' => 'tar', 'TAR371G0824' => 'tar', 'TAR622G1429' => 'tar', 'TAR623G0734' => 'tar', 'TAR625G0441' => 'tar', 'TAR629G0976' => 'tar', 'TAR633G1195' => 'tar', 'TAR636G2660' => 'tar', 'THA.LOC104799440' => 'tha', 'THA.LOC104800966' => 'tha', 'THA.LOC104806559' => 'tha', 'THA.LOC104810765' => 'tha', 'THA.LOC104816266' => 'tha', 'THA.LOC104817419' => 'tha', 'THA.LOC104827021' => 'tha', 'Thecc.01G327400' => 'tca', 'Thecc.04G229200' => 'tca', 'Thecc.05G037400' => 'tca', 'Thecc.09G318600' => 'tca', 'Thecc.09G318700' => 'tca', 'Thhalv10006238m.g' => 'esa', 'Thhalv10014321m.g' => 'esa', 'Thhalv10014335m.g' => 'esa', 'Thhalv10015826m.g' => 'esa', 'Thhalv10017107m.g' => 'esa', 'Thhalv10017180m.g' => 'esa', 'Thhalv10029339m.g' => 'esa', 'TPR.G1699' => 'tpr', 'TPR.G23609' => 'tpr', 'TPR.G3081' => 'tpr', 'TPR.G40397' => 'tpr', 'TPR.G5522' => 'tpr', 'TPR.G5618' => 'tpr', 'TPR.G5626' => 'tpr', 'TWI09G1632' => 'twi', 'TWI23G1230' => 'twi', 'TWI53G1064' => 'twi', 'TWI59G0751' => 'twi', 'TWI74G0947' => 'twi', 'TWI77G0337' => 'twi', 'TWI79G1254' => 'twi', 'unitig_0.g2341' => 'ugi', 'unitig_26.g10006' => 'ugi', 'unitig_26.g10008' => 'ugi', 'unitig_26.g9192' => 'ugi', 'vmacro14547' => 'vma', 'vmacro15333' => 'vma', 'vmacro18743' => 'vma', 'vmacro20166' => 'vma', 'VMungo0331G0523' => 'vmu', 'VMungo0331G1202' => 'vmu', 'VMungo0720G1228' => 'vmu', 'VMungo0720G1514' => 'vmu', 'VMungo1080G0169' => 'vmu', 'VMungo1127G1475' => 'vmu', 'VMungo1383G1208' => 'vmu', 'VMungo1383G1698' => 'vmu', 'Zm00001eb012270' => 'zma', 'Zm00001eb054100' => 'zma', 'Zm00001eb063350' => 'zma', 'Zm00001eb328560' => 'zma', 'Zm00001eb342820' => 'zma', 'Zm00001eb362210' => 'zma', 'Zm00001eb397730' => 'zma', 'Zm00001eb399750' => 'zma' ), 'gf_id' => 'HOM05D000959', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000959' ), 'data_identifier' => 'HOM05D000959', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000959', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '622', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p07100' => 'bna', 'A03p11720' => 'bna', 'A05p08300' => 'bna', 'A05p13380' => 'bna', 'A09p54130' => 'bna', 'A10p16690' => 'bna', 'A10p16700' => 'bna', 'A10p33390' => 'bna', 'Aa31LG10G16020' => 'aar', 'Aa31LG1G11810' => 'aar', 'Aa31LG1G11830' => 'aar', 'Aa31LG1G22510' => 'aar', 'Aa31LG5G4890' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5793' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2310' => 'aag', 'Actinidia08499' => 'ach', 'Actinidia11262' => 'ach', 'Actinidia23926' => 'ach', 'Actinidia34420' => 'ach', 'Actinidia36970' => 'ach', 'Ah.02g111220' => 'amhyb', 'Ah.15g097750' => 'amhyb', 'AL4G27500' => 'aly', 'AL6G11470' => 'aly', 'AL8G35950' => 'aly', 'AL8G35960' => 'aly', 'AL8G35970' => 'aly', 'Aqoxy1G00912' => 'aox', 'Aqoxy2G02253' => 'aox', 'Aqoxy2G02411' => 'aox', 'Aqoxy5G00485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BZ66YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K8ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM4FUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6BF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HFV7XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25JBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0YNNV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MAKK6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P70IT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP2Z6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V61LZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YWP64R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3S9AI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7PGHH' => 'arhy', 'AT2G32150' => 'ath', 'AT3G62040' => 'ath', 'AT5G02230' => 'ath', 'AT5G59480' => 'ath', 'AT5G59490' => 'ath', 'ATR0332G060' => 'atr', 'ATR0559G190' => 'atr', 'ATR0693G294' => 'atr', 'Atru.chr3.3975' => 'acertr', 'Atru.chr3.3976' => 'acertr', 'Atru.chr3.3977' => 'acertr', 'Atru.chr4.2498' => 'acertr', 'Atru.chr5.838' => 'acertr', 'Atru.chr8.1990' => 'acertr', 'Atru.chr8.1991' => 'acertr', 'Atru.chr8.1992' => 'acertr', 'AUR62001759' => 'cqu', 'AUR62009545' => 'cqu', 'AUR62010474' => 'cqu', 'AUR62025820' => 'cqu', 'AUR62030422' => 'cqu', 'AUR62033605' => 'cqu', 'AUR62038615' => 'cqu', 'AUR62041347' => 'cqu', 'BcaB01g04574' => 'bca', 'BcaB02g09263' => 'bca', 'BcaB02g10453' => 'bca', 'BcaB05g22513' => 'bca', 'BcaB08g36253' => 'bca', 'BcaB08g36254' => 'bca', 'BcaC01g06519' => 'bca', 'BcaC02g11889' => 'bca', 'BcaC03g14010' => 'bca', 'BcaC03g18439' => 'bca', 'BcaC04g19765' => 'bca', 'BcaC09g48432' => 'bca', 'BcaNung07302' => 'bca', 'BolC2t06040H' => 'bol', 'BolC2t07346H' => 'bol', 'BolC3t13817H' => 'bol', 'BolC4t22625H' => 'bol', 'BolC4t23297H' => 'bol', 'BolC8t51278H' => 'bol', 'BolC9t58050H' => 'bol', 'BolC9t58051H' => 'bol', 'BolC9t60163H' => 'bol', 'BraA02t04712Z' => 'bra', 'BraA02t05791Z' => 'bra', 'BraA03t10483Z' => 'bra', 'BraA05t19795Z' => 'bra', 'BraA05t20276Z' => 'bra', 'BraA09t40827Z' => 'bra', 'BraA10t43750Z' => 'bra', 'BraA10t43751Z' => 'bra', 'BraA10t45370Z' => 'bra', 'C02p00400' => 'bna', 'C02p12460' => 'bna', 'C03p13680' => 'bna', 'C04p10270' => 'bna', 'C04p17500' => 'bna', 'C08p37010' => 'bna', 'C09p51880' => 'bna', 'C09p51890' => 'bna', 'C09p74300' => 'bna', 'CAN.G179.26' => 'can', 'CAN.G3384.1' => 'can', 'CAN.G394.68' => 'can', 'CAN.G907.13' => 'can', 'CANSAT11G0012' => 'cansat', 'CANSAT25G1586' => 'cansat', 'CANSAT35G0735' => 'cansat', 'CANSAT54G0556' => 'cansat', 'CANSAT64G0356' => 'cansat', 'CANSAT78G2042' => 'cansat', 'CARHR125920' => 'chi', 'CARHR131910' => 'chi', 'CARHR172390' => 'chi', 'CARHR211140' => 'chi', 'CARHR285850' => 'chi', 'CARHR285860' => 'chi', 'Carub.0004s1347' => 'cru', 'Carub.0004s1960' => 'cru', 'Carub.0005s2880' => 'cru', 'Carub.0006s0107' => 'cru', 'Carub.0008s2015' => 'cru', 'Carub.0008s2016' => 'cru', 'Carub.0008s2017' => 'cru', 'Ca_01315_v3' => 'car', 'Ca_05063_v3' => 'car', 'Ca_10231_v3' => 'car', 'Ca_10913_v3' => 'car', 'Ca_19156_v3' => 'car', 'Ca_23644_v3' => 'car', 'Ca_26735_v3' => 'car', 'Cc01_g13130' => 'ccan', 'Cc02_g21690' => 'ccan', 'Cc03_g03600' => 'ccan', 'Cc06_g02510' => 'ccan', 'CDE02G1265' => 'cde', 'CDE05G0415' => 'cde', 'CDE08G1082' => 'cde', 'Cfa005780' => 'cfa', 'Cfa011522' => 'cfa', 'Cfa011523' => 'cfa', 'Cfa015627' => 'cfa', 'Cfa017359' => 'cfa', 'Ciclev10005687m.g' => 'ccl', 'Ciclev10012173m.g' => 'ccl', 'Ciclev10021621m.g' => 'ccl', 'Ciclev10028968m.g' => 'ccl', 'Ciclev10029907m.g' => 'ccl', 'CiPaw.01G164800' => 'cil', 'CiPaw.07G083700' => 'cil', 'CiPaw.07G127000' => 'cil', 'CiPaw.07G136900' => 'cil', 'CiPaw.08G081700' => 'cil', 'CiPaw.09G194600' => 'cil', 'CiPaw.10G146500' => 'cil', 'CiPaw.13G091500' => 'cil', 'CiPaw.13G091600' => 'cil', 'ClCG00G003390' => 'cla', 'ClCG01G007220' => 'cla', 'ClCG03G001370' => 'cla', 'ClCG04G008100' => 'cla', 'ClCG06G006110' => 'cla', 'ClCG06G006130' => 'cla', 'ClCG10G021210' => 'cla', 'COL.COLO4_07648' => 'col', 'COL.COLO4_07650' => 'col', 'COL.COLO4_07651' => 'col', 'COL.COLO4_14780' => 'col', 'COL.COLO4_18546' => 'col', 'COL.COLO4_18547' => 'col', 'COL.COLO4_23103' => 'col', 'COL.COLO4_30419' => 'col', 'COL.COLO4_34232' => 'col', 'Cpa.g.sc169.20' => 'cpa', 'Cpa.g.sc57.45' => 'cpa', 'Cpa.g.sc58.124' => 'cpa', 'Cpa.g.sc58.125' => 'cpa', 'Cpa.g.sc81.118' => 'cpa', 'Cpa.g.sc81.119' => 'cpa', 'Cre12.g524700' => 'cre', 'CsaV3_1G034430' => 'csa', 'CsaV3_1G034440' => 'csa', 'CsaV3_1G034450' => 'csa', 'CsaV3_3G034830' => 'csa', 'CsaV3_4G025090' => 'csa', 'CsaV3_5G018660' => 'csa', 'CsaV3_6G038160' => 'csa', 'CSS0003447' => 'camsi', 'CSS0017840' => 'camsi', 'CSS0019260' => 'camsi', 'CSS0040375' => 'camsi', 'CSS0042533' => 'camsi', 'DCAR_005960' => 'dca', 'DCAR_012104' => 'dca', 'DCAR_012105' => 'dca', 'DCAR_012293' => 'dca', 'DCAR_015632' => 'dca', 'DCAR_024602' => 'dca', 'DCAR_028752' => 'dca', 'Dinv06261' => 'din', 'Dinv13982' => 'din', 'Dinv17029' => 'din', 'Dinv18463' => 'din', 'Dinv33181' => 'din', 'Dinv35585' => 'din', 'Dinv37161' => 'din', 'Dinv42977' => 'din', 'Dinv43122' => 'din', 'Dinv44517' => 'din', 'Duzib093G0256' => 'dzi', 'Duzib106G1254' => 'dzi', 'Duzib128G1789' => 'dzi', 'Duzib133G0633' => 'dzi', 'Duzib138G0510' => 'dzi', 'Duzib150G1084' => 'dzi', 'Duzib168G0488' => 'dzi', 'Duzib168G1523' => 'dzi', 'Duzib170G0133' => 'dzi', 'ECA234G1433' => 'eca', 'ECA236G1432' => 'eca', 'ECA236G2256' => 'eca', 'ECA236G2365' => 'eca', 'ECA236G4830' => 'eca', 'ECA248G1505' => 'eca', 'EL10Ac3g06431' => 'bvu', 'EL10Ac5g12577' => 'bvu', 'EL10Ac6g13533' => 'bvu', 'EL10Ac7g16045' => 'bvu', 'Eucgr.A01281' => 'egr', 'Eucgr.B02326' => 'egr', 'Eucgr.H03532' => 'egr', 'Eucgr.K00553' => 'egr', 'Eucgr.K03116' => 'egr', 'FAN02G3963' => 'fan', 'FAN05G0438' => 'fan', 'FAN09G2434' => 'fan', 'FAN12G3984' => 'fan', 'FAN14G0798' => 'fan', 'FAN17G0652' => 'fan', 'FAN19G1988' => 'fan', 'FAN22G0632' => 'fan', 'FAN23G0387' => 'fan', 'FAN26G1323' => 'fan', 'FAN28G0666' => 'fan', 'FvH4_1g26080' => 'fve', 'FvH4_3g36780' => 'fve', 'FvH4_4g15270' => 'fve', 'FvH4_6g13490' => 'fve', 'Glyma.01G098700' => 'gma', 'Glyma.03G065900' => 'gma', 'Glyma.03G073754' => 'gma', 'Glyma.03G073758' => 'gma', 'Glyma.03G083200' => 'gma', 'Glyma.03G225500' => 'gma', 'Glyma.05G037766' => 'gma', 'Glyma.07G133500' => 'gma', 'Glyma.10G139400' => 'gma', 'Glyma.10G248900' => 'gma', 'Glyma.11G137800' => 'gma', 'Glyma.12G061300' => 'gma', 'Glyma.13G337900' => 'gma', 'Glyma.15G036600' => 'gma', 'Glyma.18G182800' => 'gma', 'Glyma.19G222500' => 'gma', 'Glyma.20G144800' => 'gma', 'Gohir.A01G222000' => 'ghi', 'Gohir.A03G044000' => 'ghi', 'Gohir.A03G044100' => 'ghi', 'Gohir.A04G083100' => 'ghi', 'Gohir.A07G127200' => 'ghi', 'Gohir.A07G132400' => 'ghi', 'Gohir.A08G000700' => 'ghi', 'Gohir.A11G327300' => 'ghi', 'Gohir.D01G211500' => 'ghi', 'Gohir.D03G123400' => 'ghi', 'Gohir.D03G123500' => 'ghi', 'Gohir.D04G121800' => 'ghi', 'Gohir.D07G131500' => 'ghi', 'Gohir.D07G136600' => 'ghi', 'Gohir.D08G011600' => 'ghi', 'Gohir.D11G346200' => 'ghi', 'Gorai.001G142800' => 'gra', 'Gorai.001G148700' => 'gra', 'Gorai.002G257300' => 'gra', 'Gorai.003G130000' => 'gra', 'Gorai.003G130100' => 'gra', 'Gorai.004G005300' => 'gra', 'Gorai.007G376500' => 'gra', 'Gorai.012G104700' => 'gra', 'GSVIVG01017946001' => 'vvi', 'GSVIVG01024928001' => 'vvi', 'GSVIVG01028227001' => 'vvi', 'GSVIVG01034151001' => 'vvi', 'HanXRQChr05g0135031' => 'han', 'HanXRQChr05g0135041' => 'han', 'HanXRQChr05g0140021' => 'han', 'HanXRQChr06g0178981' => 'han', 'HanXRQChr07g0188251' => 'han', 'HanXRQChr08g0235311' => 'han', 'HanXRQChr09g0271011' => 'han', 'HanXRQChr10g0293321' => 'han', 'HanXRQChr13g0388171' => 'han', 'Haze_00916' => 'cav', 'Haze_05063' => 'cav', 'Haze_20814' => 'cav', 'Haze_24128' => 'cav', 'Hma1.2p1_0745F.1_g212010' => 'hma', 'Hma1.2p1_0757F.1_g213260' => 'hma', 'Hma1.2p1_0936F.1_g238840' => 'hma', 'Hma1.2p1_1735F.1_g299890' => 'hma', 'Hma1.2p1_1861F.1_g305685' => 'hma', 'HPP92_003397' => 'vpl', 'HPP92_012597' => 'vpl', 'HPP92_015520' => 'vpl', 'HPP92_015539' => 'vpl', 'HPP92_020373' => 'vpl', 'Hund04938' => 'sun', 'Hund10677' => 'sun', 'Hund11033' => 'sun', 'Hund12155' => 'sun', 'Lalb_Chr01g0022551' => 'lal', 'Lalb_Chr03g0042341' => 'lal', 'Lalb_Chr07g0192931' => 'lal', 'Lalb_Chr12g0209551' => 'lal', 'Lalb_Chr19g0125251' => 'lal', 'Lalb_Chr19g0137891' => 'lal', 'Lalb_Chr21g0304641' => 'lal', 'Lalb_Chr21g0309881' => 'lal', 'Lj1A5T12' => 'lonja', 'Lj1C148G10' => 'lonja', 'Lj2A93T83' => 'lonja', 'Lj3A738G68' => 'lonja', 'Lj3C966T1' => 'lonja', 'Lj3g0018958' => 'lja', 'Lj3g0021831' => 'lja', 'Lj3g0025443' => 'lja', 'Lj4g0026809' => 'lja', 'Lj5g0012558' => 'lja', 'Lj5g0021586' => 'lja', 'Lsat_1_v5_gn_5_156840' => 'lsa', 'Lsat_1_v5_gn_8_73460' => 'lsa', 'Lsat_1_v5_gn_8_73481' => 'lsa', 'Lsat_1_v5_gn_9_31601' => 'lsa', 'Lsat_1_v5_gn_9_77320' => 'lsa', 'Manes.01G171300' => 'mes', 'Manes.01G171400' => 'mes', 'Manes.01G236100' => 'mes', 'Manes.02G130500' => 'mes', 'Manes.02G130600' => 'mes', 'Manes.03G180200' => 'mes', 'Manes.05G007000' => 'mes', 'Manes.08G084400' => 'mes', 'Manes.09G092600' => 'mes', 'Manes.15G027900' => 'mes', 'MBI04_g40948_MAGBIO' => 'mbi', 'MBI14_g12123_MAGBIO' => 'mbi', 'MBI18_g28915_MAGBIO' => 'mbi', 'MCO09G053' => 'mco', 'MCO11G782' => 'mco', 'MCO15G215' => 'mco', 'MD03G1088500' => 'mdo', 'MD03G1088600' => 'mdo', 'MD04G1130800' => 'mdo', 'MD09G1291700' => 'mdo', 'MD11G1097500' => 'mdo', 'MD11G1097600' => 'mdo', 'MD12G1143900' => 'mdo', 'MD13G1191400' => 'mdo', 'MD16G1191500' => 'mdo', 'Medtr1g085570' => 'mtr', 'Medtr1g104610' => 'mtr', 'Medtr2g097520' => 'mtr', 'Medtr4g021800' => 'mtr', 'Medtr4g021825' => 'mtr', 'Medtr4g064270' => 'mtr', 'Medtr4g064380' => 'mtr', 'Medtr7g062150' => 'mtr', 'MELO3C003138.2' => 'cme', 'MELO3C005187.2' => 'cme', 'MELO3C009252.2' => 'cme', 'MELO3C014481.2' => 'cme', 'MELO3C020616.2' => 'cme', 'MELO3C020617.2' => 'cme', 'MELO3C020618.2' => 'cme', 'Migut.G00328' => 'egut', 'Migut.J00320' => 'egut', 'Migut.L01000' => 'egut', 'Migut.L01953' => 'egut', 'MSTRG.10253' => 'ama', 'MSTRG.19077' => 'ama', 'MSTRG.26780' => 'ama', 'MSTRG.4023' => 'ama', 'MSTRG.5655' => 'ama', 'MSTRG.9992' => 'ama', 'Nitab4.5_0000043g0310' => 'nta', 'Nitab4.5_0000463g0080' => 'nta', 'Nitab4.5_0000705g0170' => 'nta', 'Nitab4.5_0001326g0060' => 'nta', 'Nitab4.5_0001628g0030' => 'nta', 'Nitab4.5_0002103g0110' => 'nta', 'Nitab4.5_0002946g0030' => 'nta', 'Nitab4.5_0004639g0030' => 'nta', 'Nn2g11149' => 'nnu', 'Nn2g13389' => 'nnu', 'Nn4g25326' => 'nnu', 'Nn4g26290' => 'nnu', 'Nn5g29865' => 'nnu', 'Oeu004163.1' => 'oeu', 'Oeu006901.1' => 'oeu', 'Oeu010096.1' => 'oeu', 'Oeu024340.1' => 'oeu', 'Oeu048369.1' => 'oeu', 'Os01g0973000' => 'osa', 'Os03g0273800' => 'osa', 'Os03g0701200' => 'osa', 'Os03g0834050' => 'osa', 'Os07g0634400' => 'osa', 'Peaxi162Scf00092g01414' => 'pax', 'Peaxi162Scf00165g00818' => 'pax', 'Peaxi162Scf00309g00516' => 'pax', 'Peaxi162Scf00774g00218' => 'pax', 'PGR004G1824' => 'pgr', 'PGR004G2606' => 'pgr', 'PGR031G2716' => 'pgr', 'PGR102G2460' => 'pgr', 'PGR142G2599' => 'pgr', 'PGSC0003DMG400000843' => 'stu', 'PGSC0003DMG400008829' => 'stu', 'PGSC0003DMG400030418' => 'stu', 'PGSC0003DMG400031834' => 'stu', 'PGSC0003DMG401028300' => 'stu', 'PGSC0003DMG402028300' => 'stu', 'Phvul.001G219300' => 'pvu', 'Phvul.007G056000' => 'pvu', 'Phvul.007G208000' => 'pvu', 'Phvul.008G119500' => 'pvu', 'Phvul.010G011200' => 'pvu', 'Phvul.010G014800' => 'pvu', 'Phvul.011G062900' => 'pvu', 'Phvul.L007043' => 'pvu', 'Potri.001G242300' => 'ptr', 'Potri.002G185300' => 'ptr', 'Potri.006G086900' => 'ptr', 'Potri.008G151700' => 'ptr', 'Potri.009G033500' => 'ptr', 'Potri.010G089300' => 'ptr', 'Potri.014G110800' => 'ptr', 'Pp3c27_8130' => 'ppa', 'Pp3c6_27410' => 'ppa', 'PRCOL_00001659' => 'pco', 'PRCOL_00001927' => 'pco', 'PRCOL_00003649' => 'pco', 'Prupe.1G011600' => 'ppe', 'Prupe.3G000800' => 'ppe', 'Prupe.3G001100' => 'ppe', 'Prupe.6G072700' => 'ppe', 'Prupe.6G072800' => 'ppe', 'Prupe.6G257300' => 'ppe', 'Prupe.8G033000' => 'ppe', 'Psat0s2633g0080' => 'psa', 'Psat0s3396g0080' => 'psa', 'Psat0s3396g0200' => 'psa', 'Psat3g139080' => 'psa', 'Psat5g285080' => 'psa', 'Psat6g157760' => 'psa', 'Psat6g208440' => 'psa', 'Psat7g215320' => 'psa', 'Psat7g215400' => 'psa', 'Psat7g235600' => 'psa', 'Psat7g235760' => 'psa', 'PSO063G4603' => 'pso', 'PSO210G0182' => 'pso', 'PSO210G0196' => 'pso', 'PSO339G0394' => 'pso', 'PSO339G4127' => 'pso', 'PSO513G0064' => 'pso', 'PSO761G0079' => 'pso', 'QL01p031003' => 'qlo', 'QL01p031078' => 'qlo', 'QL06p003004' => 'qlo', 'QL07p048731' => 'qlo', 'QL09p037427' => 'qlo', 'RcHm_v2.0_Chr3g0466361' => 'rch', 'RcHm_v2.0_Chr3g0485571' => 'rch', 'RcHm_v2.0_Chr4g0416551' => 'rch', 'RcHm_v2.0_Chr5g0065831' => 'rch', 'Rhsim01G0230500' => 'rsi', 'Rhsim05G0194000' => 'rsi', 'Rhsim08G0250400' => 'rsi', 'Sabra02G0131000' => 'sbr', 'Sabra06G0066300' => 'sbr', 'Sabra08G0115500' => 'sbr', 'Sabra09G0023900' => 'sbr', 'Sabra10G0054000' => 'sbr', 'Sabra14G0081500' => 'sbr', 'Sabra16G0147100' => 'sbr', 'SalBow2G2957' => 'sbo', 'SalBow4G3320' => 'sbo', 'SalBow8G1894' => 'sbo', 'Sc07g0007950' => 'sci', 'Sc12g0001360' => 'sci', 'Sc13g0004330' => 'sci', 'Sc20g0005010' => 'sci', 'Sed0000361' => 'sed', 'Sed0001706' => 'sed', 'Sed0002422' => 'sed', 'Sed0004029' => 'sed', 'Sed0004602' => 'sed', 'Sed0004943' => 'sed', 'Sed0008646' => 'sed', 'Sed0023313' => 'sed', 'Sed0024843' => 'sed', 'SEGI_00081' => 'sgi', 'SEGI_00947' => 'sgi', 'SEGI_04046' => 'sgi', 'SEGI_06880' => 'sgi', 'SEGI_09736' => 'sgi', 'SEGI_12741' => 'sgi', 'SEGI_14530' => 'sgi', 'SEGI_20705' => 'sgi', 'SEGI_26088' => 'sgi', 'SEGI_28323' => 'sgi', 'SEGI_33343' => 'sgi', 'SGA_v2.0_scaffold126G33775' => 'sas', 'SGA_v2.0_scaffold2G01337' => 'sas', 'SGA_v2.0_scaffold38G15006' => 'sas', 'SGA_v2.0_scaffold39G15264' => 'sas', 'SGA_v2.0_scaffold453G51880' => 'sas', 'SHI12696' => 'shi', 'SMO367G1096' => 'smo', 'Solyc01g068630.3' => 'sly', 'Solyc05g011880.3' => 'sly', 'Solyc06g076300.3' => 'sly', 'Solyc09g010940.4' => 'sly', 'Solyc09g075890.3' => 'sly', 'Sopen01g030560' => 'spe', 'Sopen05g006630' => 'spe', 'Sopen06g032720' => 'spe', 'Sopen09g005660' => 'spe', 'Sopen09g030690' => 'spe', 'Sp4g14540' => 'spa', 'Sp4g20030' => 'spa', 'Sp5g01320' => 'spa', 'Sp6g21170' => 'spa', 'Sp6g21180' => 'spa', 'Sp6g21190' => 'spa', 'Sp6g40220' => 'spa', 'TAR362G0122' => 'tar', 'TAR362G1338' => 'tar', 'TAR369G0590' => 'tar', 'TAR371G0824' => 'tar', 'TAR622G1429' => 'tar', 'TAR623G0734' => 'tar', 'TAR625G0441' => 'tar', 'TAR629G0976' => 'tar', 'TAR633G1195' => 'tar', 'TAR636G2660' => 'tar', 'THA.LOC104799440' => 'tha', 'THA.LOC104800966' => 'tha', 'THA.LOC104806559' => 'tha', 'THA.LOC104810765' => 'tha', 'THA.LOC104816266' => 'tha', 'THA.LOC104817419' => 'tha', 'THA.LOC104827021' => 'tha', 'Thecc.01G327400' => 'tca', 'Thecc.04G229200' => 'tca', 'Thecc.05G037400' => 'tca', 'Thecc.09G318600' => 'tca', 'Thecc.09G318700' => 'tca', 'Thhalv10006238m.g' => 'esa', 'Thhalv10014321m.g' => 'esa', 'Thhalv10014335m.g' => 'esa', 'Thhalv10015826m.g' => 'esa', 'Thhalv10017107m.g' => 'esa', 'Thhalv10017180m.g' => 'esa', 'Thhalv10029339m.g' => 'esa', 'TPR.G1699' => 'tpr', 'TPR.G23609' => 'tpr', 'TPR.G3081' => 'tpr', 'TPR.G40397' => 'tpr', 'TPR.G5522' => 'tpr', 'TPR.G5618' => 'tpr', 'TPR.G5626' => 'tpr', 'TWI09G1632' => 'twi', 'TWI23G1230' => 'twi', 'TWI53G1064' => 'twi', 'TWI59G0751' => 'twi', 'TWI74G0947' => 'twi', 'TWI77G0337' => 'twi', 'TWI79G1254' => 'twi', 'unitig_0.g2341' => 'ugi', 'unitig_26.g10006' => 'ugi', 'unitig_26.g10008' => 'ugi', 'unitig_26.g9192' => 'ugi', 'vmacro14547' => 'vma', 'vmacro15333' => 'vma', 'vmacro18743' => 'vma', 'vmacro20166' => 'vma', 'VMungo0331G0523' => 'vmu', 'VMungo0331G1202' => 'vmu', 'VMungo0720G1228' => 'vmu', 'VMungo0720G1514' => 'vmu', 'VMungo1080G0169' => 'vmu', 'VMungo1127G1475' => 'vmu', 'VMungo1383G1208' => 'vmu', 'VMungo1383G1698' => 'vmu', 'Zm00001eb012270' => 'zma', 'Zm00001eb054100' => 'zma', 'Zm00001eb063350' => 'zma', 'Zm00001eb328560' => 'zma', 'Zm00001eb342820' => 'zma', 'Zm00001eb362210' => 'zma', 'Zm00001eb397730' => 'zma', 'Zm00001eb399750' => 'zma' ) $gf_id = 'HOM05D000959' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000959' ) $data_identifier = 'HOM05D000959' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 5, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 5, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 10, 'mbi' => (int) 3, 'mco' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 2, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 3, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 11, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399750' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000959', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '622', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p07100' => 'bna', 'A03p11720' => 'bna', 'A05p08300' => 'bna', 'A05p13380' => 'bna', 'A09p54130' => 'bna', 'A10p16690' => 'bna', 'A10p16700' => 'bna', 'A10p33390' => 'bna', 'Aa31LG10G16020' => 'aar', 'Aa31LG1G11810' => 'aar', 'Aa31LG1G11830' => 'aar', 'Aa31LG1G22510' => 'aar', 'Aa31LG5G4890' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5793' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2310' => 'aag', 'Actinidia08499' => 'ach', 'Actinidia11262' => 'ach', 'Actinidia23926' => 'ach', 'Actinidia34420' => 'ach', 'Actinidia36970' => 'ach', 'Ah.02g111220' => 'amhyb', 'Ah.15g097750' => 'amhyb', 'AL4G27500' => 'aly', 'AL6G11470' => 'aly', 'AL8G35950' => 'aly', 'AL8G35960' => 'aly', 'AL8G35970' => 'aly', 'Aqoxy1G00912' => 'aox', 'Aqoxy2G02253' => 'aox', 'Aqoxy2G02411' => 'aox', 'Aqoxy5G00485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BZ66YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K8ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM4FUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6BF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HFV7XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25JBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0YNNV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MAKK6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P70IT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP2Z6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V61LZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YWP64R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3S9AI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7PGHH' => 'arhy', 'AT2G32150' => 'ath', 'AT3G62040' => 'ath', 'AT5G02230' => 'ath', 'AT5G59480' => 'ath', 'AT5G59490' => 'ath', 'ATR0332G060' => 'atr', 'ATR0559G190' => 'atr', 'ATR0693G294' => 'atr', 'Atru.chr3.3975' => 'acertr', 'Atru.chr3.3976' => 'acertr', 'Atru.chr3.3977' => 'acertr', 'Atru.chr4.2498' => 'acertr', 'Atru.chr5.838' => 'acertr', 'Atru.chr8.1990' => 'acertr', 'Atru.chr8.1991' => 'acertr', 'Atru.chr8.1992' => 'acertr', 'AUR62001759' => 'cqu', 'AUR62009545' => 'cqu', 'AUR62010474' => 'cqu', 'AUR62025820' => 'cqu', 'AUR62030422' => 'cqu', 'AUR62033605' => 'cqu', 'AUR62038615' => 'cqu', 'AUR62041347' => 'cqu', 'BcaB01g04574' => 'bca', 'BcaB02g09263' => 'bca', 'BcaB02g10453' => 'bca', 'BcaB05g22513' => 'bca', 'BcaB08g36253' => 'bca', 'BcaB08g36254' => 'bca', 'BcaC01g06519' => 'bca', 'BcaC02g11889' => 'bca', 'BcaC03g14010' => 'bca', 'BcaC03g18439' => 'bca', 'BcaC04g19765' => 'bca', 'BcaC09g48432' => 'bca', 'BcaNung07302' => 'bca', 'BolC2t06040H' => 'bol', 'BolC2t07346H' => 'bol', 'BolC3t13817H' => 'bol', 'BolC4t22625H' => 'bol', 'BolC4t23297H' => 'bol', 'BolC8t51278H' => 'bol', 'BolC9t58050H' => 'bol', 'BolC9t58051H' => 'bol', 'BolC9t60163H' => 'bol', 'BraA02t04712Z' => 'bra', 'BraA02t05791Z' => 'bra', 'BraA03t10483Z' => 'bra', 'BraA05t19795Z' => 'bra', 'BraA05t20276Z' => 'bra', 'BraA09t40827Z' => 'bra', 'BraA10t43750Z' => 'bra', 'BraA10t43751Z' => 'bra', 'BraA10t45370Z' => 'bra', 'C02p00400' => 'bna', 'C02p12460' => 'bna', 'C03p13680' => 'bna', 'C04p10270' => 'bna', 'C04p17500' => 'bna', 'C08p37010' => 'bna', 'C09p51880' => 'bna', 'C09p51890' => 'bna', 'C09p74300' => 'bna', 'CAN.G179.26' => 'can', 'CAN.G3384.1' => 'can', 'CAN.G394.68' => 'can', 'CAN.G907.13' => 'can', 'CANSAT11G0012' => 'cansat', 'CANSAT25G1586' => 'cansat', 'CANSAT35G0735' => 'cansat', 'CANSAT54G0556' => 'cansat', 'CANSAT64G0356' => 'cansat', 'CANSAT78G2042' => 'cansat', 'CARHR125920' => 'chi', 'CARHR131910' => 'chi', 'CARHR172390' => 'chi', 'CARHR211140' => 'chi', 'CARHR285850' => 'chi', 'CARHR285860' => 'chi', 'Carub.0004s1347' => 'cru', 'Carub.0004s1960' => 'cru', 'Carub.0005s2880' => 'cru', 'Carub.0006s0107' => 'cru', 'Carub.0008s2015' => 'cru', 'Carub.0008s2016' => 'cru', 'Carub.0008s2017' => 'cru', 'Ca_01315_v3' => 'car', 'Ca_05063_v3' => 'car', 'Ca_10231_v3' => 'car', 'Ca_10913_v3' => 'car', 'Ca_19156_v3' => 'car', 'Ca_23644_v3' => 'car', 'Ca_26735_v3' => 'car', 'Cc01_g13130' => 'ccan', 'Cc02_g21690' => 'ccan', 'Cc03_g03600' => 'ccan', 'Cc06_g02510' => 'ccan', 'CDE02G1265' => 'cde', 'CDE05G0415' => 'cde', 'CDE08G1082' => 'cde', 'Cfa005780' => 'cfa', 'Cfa011522' => 'cfa', 'Cfa011523' => 'cfa', 'Cfa015627' => 'cfa', 'Cfa017359' => 'cfa', 'Ciclev10005687m.g' => 'ccl', 'Ciclev10012173m.g' => 'ccl', 'Ciclev10021621m.g' => 'ccl', 'Ciclev10028968m.g' => 'ccl', 'Ciclev10029907m.g' => 'ccl', 'CiPaw.01G164800' => 'cil', 'CiPaw.07G083700' => 'cil', 'CiPaw.07G127000' => 'cil', 'CiPaw.07G136900' => 'cil', 'CiPaw.08G081700' => 'cil', 'CiPaw.09G194600' => 'cil', 'CiPaw.10G146500' => 'cil', 'CiPaw.13G091500' => 'cil', 'CiPaw.13G091600' => 'cil', 'ClCG00G003390' => 'cla', 'ClCG01G007220' => 'cla', 'ClCG03G001370' => 'cla', 'ClCG04G008100' => 'cla', 'ClCG06G006110' => 'cla', 'ClCG06G006130' => 'cla', 'ClCG10G021210' => 'cla', 'COL.COLO4_07648' => 'col', 'COL.COLO4_07650' => 'col', 'COL.COLO4_07651' => 'col', 'COL.COLO4_14780' => 'col', 'COL.COLO4_18546' => 'col', 'COL.COLO4_18547' => 'col', 'COL.COLO4_23103' => 'col', 'COL.COLO4_30419' => 'col', 'COL.COLO4_34232' => 'col', 'Cpa.g.sc169.20' => 'cpa', 'Cpa.g.sc57.45' => 'cpa', 'Cpa.g.sc58.124' => 'cpa', 'Cpa.g.sc58.125' => 'cpa', 'Cpa.g.sc81.118' => 'cpa', 'Cpa.g.sc81.119' => 'cpa', 'Cre12.g524700' => 'cre', 'CsaV3_1G034430' => 'csa', 'CsaV3_1G034440' => 'csa', 'CsaV3_1G034450' => 'csa', 'CsaV3_3G034830' => 'csa', 'CsaV3_4G025090' => 'csa', 'CsaV3_5G018660' => 'csa', 'CsaV3_6G038160' => 'csa', 'CSS0003447' => 'camsi', 'CSS0017840' => 'camsi', 'CSS0019260' => 'camsi', 'CSS0040375' => 'camsi', 'CSS0042533' => 'camsi', 'DCAR_005960' => 'dca', 'DCAR_012104' => 'dca', 'DCAR_012105' => 'dca', 'DCAR_012293' => 'dca', 'DCAR_015632' => 'dca', 'DCAR_024602' => 'dca', 'DCAR_028752' => 'dca', 'Dinv06261' => 'din', 'Dinv13982' => 'din', 'Dinv17029' => 'din', 'Dinv18463' => 'din', 'Dinv33181' => 'din', 'Dinv35585' => 'din', 'Dinv37161' => 'din', 'Dinv42977' => 'din', 'Dinv43122' => 'din', 'Dinv44517' => 'din', 'Duzib093G0256' => 'dzi', 'Duzib106G1254' => 'dzi', 'Duzib128G1789' => 'dzi', 'Duzib133G0633' => 'dzi', 'Duzib138G0510' => 'dzi', 'Duzib150G1084' => 'dzi', 'Duzib168G0488' => 'dzi', 'Duzib168G1523' => 'dzi', 'Duzib170G0133' => 'dzi', 'ECA234G1433' => 'eca', 'ECA236G1432' => 'eca', 'ECA236G2256' => 'eca', 'ECA236G2365' => 'eca', 'ECA236G4830' => 'eca', 'ECA248G1505' => 'eca', 'EL10Ac3g06431' => 'bvu', 'EL10Ac5g12577' => 'bvu', 'EL10Ac6g13533' => 'bvu', 'EL10Ac7g16045' => 'bvu', 'Eucgr.A01281' => 'egr', 'Eucgr.B02326' => 'egr', 'Eucgr.H03532' => 'egr', 'Eucgr.K00553' => 'egr', 'Eucgr.K03116' => 'egr', 'FAN02G3963' => 'fan', 'FAN05G0438' => 'fan', 'FAN09G2434' => 'fan', 'FAN12G3984' => 'fan', 'FAN14G0798' => 'fan', 'FAN17G0652' => 'fan', 'FAN19G1988' => 'fan', 'FAN22G0632' => 'fan', 'FAN23G0387' => 'fan', 'FAN26G1323' => 'fan', 'FAN28G0666' => 'fan', 'FvH4_1g26080' => 'fve', 'FvH4_3g36780' => 'fve', 'FvH4_4g15270' => 'fve', 'FvH4_6g13490' => 'fve', 'Glyma.01G098700' => 'gma', 'Glyma.03G065900' => 'gma', 'Glyma.03G073754' => 'gma', 'Glyma.03G073758' => 'gma', 'Glyma.03G083200' => 'gma', 'Glyma.03G225500' => 'gma', 'Glyma.05G037766' => 'gma', 'Glyma.07G133500' => 'gma', 'Glyma.10G139400' => 'gma', 'Glyma.10G248900' => 'gma', 'Glyma.11G137800' => 'gma', 'Glyma.12G061300' => 'gma', 'Glyma.13G337900' => 'gma', 'Glyma.15G036600' => 'gma', 'Glyma.18G182800' => 'gma', 'Glyma.19G222500' => 'gma', 'Glyma.20G144800' => 'gma', 'Gohir.A01G222000' => 'ghi', 'Gohir.A03G044000' => 'ghi', 'Gohir.A03G044100' => 'ghi', 'Gohir.A04G083100' => 'ghi', 'Gohir.A07G127200' => 'ghi', 'Gohir.A07G132400' => 'ghi', 'Gohir.A08G000700' => 'ghi', 'Gohir.A11G327300' => 'ghi', 'Gohir.D01G211500' => 'ghi', 'Gohir.D03G123400' => 'ghi', 'Gohir.D03G123500' => 'ghi', 'Gohir.D04G121800' => 'ghi', 'Gohir.D07G131500' => 'ghi', 'Gohir.D07G136600' => 'ghi', 'Gohir.D08G011600' => 'ghi', 'Gohir.D11G346200' => 'ghi', 'Gorai.001G142800' => 'gra', 'Gorai.001G148700' => 'gra', 'Gorai.002G257300' => 'gra', 'Gorai.003G130000' => 'gra', 'Gorai.003G130100' => 'gra', 'Gorai.004G005300' => 'gra', 'Gorai.007G376500' => 'gra', 'Gorai.012G104700' => 'gra', 'GSVIVG01017946001' => 'vvi', 'GSVIVG01024928001' => 'vvi', 'GSVIVG01028227001' => 'vvi', 'GSVIVG01034151001' => 'vvi', 'HanXRQChr05g0135031' => 'han', 'HanXRQChr05g0135041' => 'han', 'HanXRQChr05g0140021' => 'han', 'HanXRQChr06g0178981' => 'han', 'HanXRQChr07g0188251' => 'han', 'HanXRQChr08g0235311' => 'han', 'HanXRQChr09g0271011' => 'han', 'HanXRQChr10g0293321' => 'han', 'HanXRQChr13g0388171' => 'han', 'Haze_00916' => 'cav', 'Haze_05063' => 'cav', 'Haze_20814' => 'cav', 'Haze_24128' => 'cav', 'Hma1.2p1_0745F.1_g212010' => 'hma', 'Hma1.2p1_0757F.1_g213260' => 'hma', 'Hma1.2p1_0936F.1_g238840' => 'hma', 'Hma1.2p1_1735F.1_g299890' => 'hma', 'Hma1.2p1_1861F.1_g305685' => 'hma', 'HPP92_003397' => 'vpl', 'HPP92_012597' => 'vpl', 'HPP92_015520' => 'vpl', 'HPP92_015539' => 'vpl', 'HPP92_020373' => 'vpl', 'Hund04938' => 'sun', 'Hund10677' => 'sun', 'Hund11033' => 'sun', 'Hund12155' => 'sun', 'Lalb_Chr01g0022551' => 'lal', 'Lalb_Chr03g0042341' => 'lal', 'Lalb_Chr07g0192931' => 'lal', 'Lalb_Chr12g0209551' => 'lal', 'Lalb_Chr19g0125251' => 'lal', 'Lalb_Chr19g0137891' => 'lal', 'Lalb_Chr21g0304641' => 'lal', 'Lalb_Chr21g0309881' => 'lal', 'Lj1A5T12' => 'lonja', 'Lj1C148G10' => 'lonja', 'Lj2A93T83' => 'lonja', 'Lj3A738G68' => 'lonja', 'Lj3C966T1' => 'lonja', 'Lj3g0018958' => 'lja', 'Lj3g0021831' => 'lja', 'Lj3g0025443' => 'lja', 'Lj4g0026809' => 'lja', 'Lj5g0012558' => 'lja', 'Lj5g0021586' => 'lja', 'Lsat_1_v5_gn_5_156840' => 'lsa', 'Lsat_1_v5_gn_8_73460' => 'lsa', 'Lsat_1_v5_gn_8_73481' => 'lsa', 'Lsat_1_v5_gn_9_31601' => 'lsa', 'Lsat_1_v5_gn_9_77320' => 'lsa', 'Manes.01G171300' => 'mes', 'Manes.01G171400' => 'mes', 'Manes.01G236100' => 'mes', 'Manes.02G130500' => 'mes', 'Manes.02G130600' => 'mes', 'Manes.03G180200' => 'mes', 'Manes.05G007000' => 'mes', 'Manes.08G084400' => 'mes', 'Manes.09G092600' => 'mes', 'Manes.15G027900' => 'mes', 'MBI04_g40948_MAGBIO' => 'mbi', 'MBI14_g12123_MAGBIO' => 'mbi', 'MBI18_g28915_MAGBIO' => 'mbi', 'MCO09G053' => 'mco', 'MCO11G782' => 'mco', 'MCO15G215' => 'mco', 'MD03G1088500' => 'mdo', 'MD03G1088600' => 'mdo', 'MD04G1130800' => 'mdo', 'MD09G1291700' => 'mdo', 'MD11G1097500' => 'mdo', 'MD11G1097600' => 'mdo', 'MD12G1143900' => 'mdo', 'MD13G1191400' => 'mdo', 'MD16G1191500' => 'mdo', 'Medtr1g085570' => 'mtr', 'Medtr1g104610' => 'mtr', 'Medtr2g097520' => 'mtr', 'Medtr4g021800' => 'mtr', 'Medtr4g021825' => 'mtr', 'Medtr4g064270' => 'mtr', 'Medtr4g064380' => 'mtr', 'Medtr7g062150' => 'mtr', 'MELO3C003138.2' => 'cme', 'MELO3C005187.2' => 'cme', 'MELO3C009252.2' => 'cme', 'MELO3C014481.2' => 'cme', 'MELO3C020616.2' => 'cme', 'MELO3C020617.2' => 'cme', 'MELO3C020618.2' => 'cme', 'Migut.G00328' => 'egut', 'Migut.J00320' => 'egut', 'Migut.L01000' => 'egut', 'Migut.L01953' => 'egut', 'MSTRG.10253' => 'ama', 'MSTRG.19077' => 'ama', 'MSTRG.26780' => 'ama', 'MSTRG.4023' => 'ama', 'MSTRG.5655' => 'ama', 'MSTRG.9992' => 'ama', 'Nitab4.5_0000043g0310' => 'nta', 'Nitab4.5_0000463g0080' => 'nta', 'Nitab4.5_0000705g0170' => 'nta', 'Nitab4.5_0001326g0060' => 'nta', 'Nitab4.5_0001628g0030' => 'nta', 'Nitab4.5_0002103g0110' => 'nta', 'Nitab4.5_0002946g0030' => 'nta', 'Nitab4.5_0004639g0030' => 'nta', 'Nn2g11149' => 'nnu', 'Nn2g13389' => 'nnu', 'Nn4g25326' => 'nnu', 'Nn4g26290' => 'nnu', 'Nn5g29865' => 'nnu', 'Oeu004163.1' => 'oeu', 'Oeu006901.1' => 'oeu', 'Oeu010096.1' => 'oeu', 'Oeu024340.1' => 'oeu', 'Oeu048369.1' => 'oeu', 'Os01g0973000' => 'osa', 'Os03g0273800' => 'osa', 'Os03g0701200' => 'osa', 'Os03g0834050' => 'osa', 'Os07g0634400' => 'osa', 'Peaxi162Scf00092g01414' => 'pax', 'Peaxi162Scf00165g00818' => 'pax', 'Peaxi162Scf00309g00516' => 'pax', 'Peaxi162Scf00774g00218' => 'pax', 'PGR004G1824' => 'pgr', 'PGR004G2606' => 'pgr', 'PGR031G2716' => 'pgr', 'PGR102G2460' => 'pgr', 'PGR142G2599' => 'pgr', 'PGSC0003DMG400000843' => 'stu', 'PGSC0003DMG400008829' => 'stu', 'PGSC0003DMG400030418' => 'stu', 'PGSC0003DMG400031834' => 'stu', 'PGSC0003DMG401028300' => 'stu', 'PGSC0003DMG402028300' => 'stu', 'Phvul.001G219300' => 'pvu', 'Phvul.007G056000' => 'pvu', 'Phvul.007G208000' => 'pvu', 'Phvul.008G119500' => 'pvu', 'Phvul.010G011200' => 'pvu', 'Phvul.010G014800' => 'pvu', 'Phvul.011G062900' => 'pvu', 'Phvul.L007043' => 'pvu', 'Potri.001G242300' => 'ptr', 'Potri.002G185300' => 'ptr', 'Potri.006G086900' => 'ptr', 'Potri.008G151700' => 'ptr', 'Potri.009G033500' => 'ptr', 'Potri.010G089300' => 'ptr', 'Potri.014G110800' => 'ptr', 'Pp3c27_8130' => 'ppa', 'Pp3c6_27410' => 'ppa', 'PRCOL_00001659' => 'pco', 'PRCOL_00001927' => 'pco', 'PRCOL_00003649' => 'pco', 'Prupe.1G011600' => 'ppe', 'Prupe.3G000800' => 'ppe', 'Prupe.3G001100' => 'ppe', 'Prupe.6G072700' => 'ppe', 'Prupe.6G072800' => 'ppe', 'Prupe.6G257300' => 'ppe', 'Prupe.8G033000' => 'ppe', 'Psat0s2633g0080' => 'psa', 'Psat0s3396g0080' => 'psa', 'Psat0s3396g0200' => 'psa', 'Psat3g139080' => 'psa', 'Psat5g285080' => 'psa', 'Psat6g157760' => 'psa', 'Psat6g208440' => 'psa', 'Psat7g215320' => 'psa', 'Psat7g215400' => 'psa', 'Psat7g235600' => 'psa', 'Psat7g235760' => 'psa', 'PSO063G4603' => 'pso', 'PSO210G0182' => 'pso', 'PSO210G0196' => 'pso', 'PSO339G0394' => 'pso', 'PSO339G4127' => 'pso', 'PSO513G0064' => 'pso', 'PSO761G0079' => 'pso', 'QL01p031003' => 'qlo', 'QL01p031078' => 'qlo', 'QL06p003004' => 'qlo', 'QL07p048731' => 'qlo', 'QL09p037427' => 'qlo', 'RcHm_v2.0_Chr3g0466361' => 'rch', 'RcHm_v2.0_Chr3g0485571' => 'rch', 'RcHm_v2.0_Chr4g0416551' => 'rch', 'RcHm_v2.0_Chr5g0065831' => 'rch', 'Rhsim01G0230500' => 'rsi', 'Rhsim05G0194000' => 'rsi', 'Rhsim08G0250400' => 'rsi', 'Sabra02G0131000' => 'sbr', 'Sabra06G0066300' => 'sbr', 'Sabra08G0115500' => 'sbr', 'Sabra09G0023900' => 'sbr', 'Sabra10G0054000' => 'sbr', 'Sabra14G0081500' => 'sbr', 'Sabra16G0147100' => 'sbr', 'SalBow2G2957' => 'sbo', 'SalBow4G3320' => 'sbo', 'SalBow8G1894' => 'sbo', 'Sc07g0007950' => 'sci', 'Sc12g0001360' => 'sci', 'Sc13g0004330' => 'sci', 'Sc20g0005010' => 'sci', 'Sed0000361' => 'sed', 'Sed0001706' => 'sed', 'Sed0002422' => 'sed', 'Sed0004029' => 'sed', 'Sed0004602' => 'sed', 'Sed0004943' => 'sed', 'Sed0008646' => 'sed', 'Sed0023313' => 'sed', 'Sed0024843' => 'sed', 'SEGI_00081' => 'sgi', 'SEGI_00947' => 'sgi', 'SEGI_04046' => 'sgi', 'SEGI_06880' => 'sgi', 'SEGI_09736' => 'sgi', 'SEGI_12741' => 'sgi', 'SEGI_14530' => 'sgi', 'SEGI_20705' => 'sgi', 'SEGI_26088' => 'sgi', 'SEGI_28323' => 'sgi', 'SEGI_33343' => 'sgi', 'SGA_v2.0_scaffold126G33775' => 'sas', 'SGA_v2.0_scaffold2G01337' => 'sas', 'SGA_v2.0_scaffold38G15006' => 'sas', 'SGA_v2.0_scaffold39G15264' => 'sas', 'SGA_v2.0_scaffold453G51880' => 'sas', 'SHI12696' => 'shi', 'SMO367G1096' => 'smo', 'Solyc01g068630.3' => 'sly', 'Solyc05g011880.3' => 'sly', 'Solyc06g076300.3' => 'sly', 'Solyc09g010940.4' => 'sly', 'Solyc09g075890.3' => 'sly', 'Sopen01g030560' => 'spe', 'Sopen05g006630' => 'spe', 'Sopen06g032720' => 'spe', 'Sopen09g005660' => 'spe', 'Sopen09g030690' => 'spe', 'Sp4g14540' => 'spa', 'Sp4g20030' => 'spa', 'Sp5g01320' => 'spa', 'Sp6g21170' => 'spa', 'Sp6g21180' => 'spa', 'Sp6g21190' => 'spa', 'Sp6g40220' => 'spa', 'TAR362G0122' => 'tar', 'TAR362G1338' => 'tar', 'TAR369G0590' => 'tar', 'TAR371G0824' => 'tar', 'TAR622G1429' => 'tar', 'TAR623G0734' => 'tar', 'TAR625G0441' => 'tar', 'TAR629G0976' => 'tar', 'TAR633G1195' => 'tar', 'TAR636G2660' => 'tar', 'THA.LOC104799440' => 'tha', 'THA.LOC104800966' => 'tha', 'THA.LOC104806559' => 'tha', 'THA.LOC104810765' => 'tha', 'THA.LOC104816266' => 'tha', 'THA.LOC104817419' => 'tha', 'THA.LOC104827021' => 'tha', 'Thecc.01G327400' => 'tca', 'Thecc.04G229200' => 'tca', 'Thecc.05G037400' => 'tca', 'Thecc.09G318600' => 'tca', 'Thecc.09G318700' => 'tca', 'Thhalv10006238m.g' => 'esa', 'Thhalv10014321m.g' => 'esa', 'Thhalv10014335m.g' => 'esa', 'Thhalv10015826m.g' => 'esa', 'Thhalv10017107m.g' => 'esa', 'Thhalv10017180m.g' => 'esa', 'Thhalv10029339m.g' => 'esa', 'TPR.G1699' => 'tpr', 'TPR.G23609' => 'tpr', 'TPR.G3081' => 'tpr', 'TPR.G40397' => 'tpr', 'TPR.G5522' => 'tpr', 'TPR.G5618' => 'tpr', 'TPR.G5626' => 'tpr', 'TWI09G1632' => 'twi', 'TWI23G1230' => 'twi', 'TWI53G1064' => 'twi', 'TWI59G0751' => 'twi', 'TWI74G0947' => 'twi', 'TWI77G0337' => 'twi', 'TWI79G1254' => 'twi', 'unitig_0.g2341' => 'ugi', 'unitig_26.g10006' => 'ugi', 'unitig_26.g10008' => 'ugi', 'unitig_26.g9192' => 'ugi', 'vmacro14547' => 'vma', 'vmacro15333' => 'vma', 'vmacro18743' => 'vma', 'vmacro20166' => 'vma', 'VMungo0331G0523' => 'vmu', 'VMungo0331G1202' => 'vmu', 'VMungo0720G1228' => 'vmu', 'VMungo0720G1514' => 'vmu', 'VMungo1080G0169' => 'vmu', 'VMungo1127G1475' => 'vmu', 'VMungo1383G1208' => 'vmu', 'VMungo1383G1698' => 'vmu', 'Zm00001eb012270' => 'zma', 'Zm00001eb054100' => 'zma', 'Zm00001eb063350' => 'zma', 'Zm00001eb328560' => 'zma', 'Zm00001eb342820' => 'zma', 'Zm00001eb362210' => 'zma', 'Zm00001eb397730' => 'zma', 'Zm00001eb399750' => 'zma' ), 'gf_id' => 'HOM05D000959', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000959' ), 'data_identifier' => 'HOM05D000959', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000959', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '622', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p07100' => 'bna', 'A03p11720' => 'bna', 'A05p08300' => 'bna', 'A05p13380' => 'bna', 'A09p54130' => 'bna', 'A10p16690' => 'bna', 'A10p16700' => 'bna', 'A10p33390' => 'bna', 'Aa31LG10G16020' => 'aar', 'Aa31LG1G11810' => 'aar', 'Aa31LG1G11830' => 'aar', 'Aa31LG1G22510' => 'aar', 'Aa31LG5G4890' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5793' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2310' => 'aag', 'Actinidia08499' => 'ach', 'Actinidia11262' => 'ach', 'Actinidia23926' => 'ach', 'Actinidia34420' => 'ach', 'Actinidia36970' => 'ach', 'Ah.02g111220' => 'amhyb', 'Ah.15g097750' => 'amhyb', 'AL4G27500' => 'aly', 'AL6G11470' => 'aly', 'AL8G35950' => 'aly', 'AL8G35960' => 'aly', 'AL8G35970' => 'aly', 'Aqoxy1G00912' => 'aox', 'Aqoxy2G02253' => 'aox', 'Aqoxy2G02411' => 'aox', 'Aqoxy5G00485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BZ66YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K8ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM4FUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6BF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HFV7XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25JBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0YNNV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MAKK6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P70IT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP2Z6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V61LZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YWP64R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3S9AI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7PGHH' => 'arhy', 'AT2G32150' => 'ath', 'AT3G62040' => 'ath', 'AT5G02230' => 'ath', 'AT5G59480' => 'ath', 'AT5G59490' => 'ath', 'ATR0332G060' => 'atr', 'ATR0559G190' => 'atr', 'ATR0693G294' => 'atr', 'Atru.chr3.3975' => 'acertr', 'Atru.chr3.3976' => 'acertr', 'Atru.chr3.3977' => 'acertr', 'Atru.chr4.2498' => 'acertr', 'Atru.chr5.838' => 'acertr', 'Atru.chr8.1990' => 'acertr', 'Atru.chr8.1991' => 'acertr', 'Atru.chr8.1992' => 'acertr', 'AUR62001759' => 'cqu', 'AUR62009545' => 'cqu', 'AUR62010474' => 'cqu', 'AUR62025820' => 'cqu', 'AUR62030422' => 'cqu', 'AUR62033605' => 'cqu', 'AUR62038615' => 'cqu', 'AUR62041347' => 'cqu', 'BcaB01g04574' => 'bca', 'BcaB02g09263' => 'bca', 'BcaB02g10453' => 'bca', 'BcaB05g22513' => 'bca', 'BcaB08g36253' => 'bca', 'BcaB08g36254' => 'bca', 'BcaC01g06519' => 'bca', 'BcaC02g11889' => 'bca', 'BcaC03g14010' => 'bca', 'BcaC03g18439' => 'bca', 'BcaC04g19765' => 'bca', 'BcaC09g48432' => 'bca', 'BcaNung07302' => 'bca', 'BolC2t06040H' => 'bol', 'BolC2t07346H' => 'bol', 'BolC3t13817H' => 'bol', 'BolC4t22625H' => 'bol', 'BolC4t23297H' => 'bol', 'BolC8t51278H' => 'bol', 'BolC9t58050H' => 'bol', 'BolC9t58051H' => 'bol', 'BolC9t60163H' => 'bol', 'BraA02t04712Z' => 'bra', 'BraA02t05791Z' => 'bra', 'BraA03t10483Z' => 'bra', 'BraA05t19795Z' => 'bra', 'BraA05t20276Z' => 'bra', 'BraA09t40827Z' => 'bra', 'BraA10t43750Z' => 'bra', 'BraA10t43751Z' => 'bra', 'BraA10t45370Z' => 'bra', 'C02p00400' => 'bna', 'C02p12460' => 'bna', 'C03p13680' => 'bna', 'C04p10270' => 'bna', 'C04p17500' => 'bna', 'C08p37010' => 'bna', 'C09p51880' => 'bna', 'C09p51890' => 'bna', 'C09p74300' => 'bna', 'CAN.G179.26' => 'can', 'CAN.G3384.1' => 'can', 'CAN.G394.68' => 'can', 'CAN.G907.13' => 'can', 'CANSAT11G0012' => 'cansat', 'CANSAT25G1586' => 'cansat', 'CANSAT35G0735' => 'cansat', 'CANSAT54G0556' => 'cansat', 'CANSAT64G0356' => 'cansat', 'CANSAT78G2042' => 'cansat', 'CARHR125920' => 'chi', 'CARHR131910' => 'chi', 'CARHR172390' => 'chi', 'CARHR211140' => 'chi', 'CARHR285850' => 'chi', 'CARHR285860' => 'chi', 'Carub.0004s1347' => 'cru', 'Carub.0004s1960' => 'cru', 'Carub.0005s2880' => 'cru', 'Carub.0006s0107' => 'cru', 'Carub.0008s2015' => 'cru', 'Carub.0008s2016' => 'cru', 'Carub.0008s2017' => 'cru', 'Ca_01315_v3' => 'car', 'Ca_05063_v3' => 'car', 'Ca_10231_v3' => 'car', 'Ca_10913_v3' => 'car', 'Ca_19156_v3' => 'car', 'Ca_23644_v3' => 'car', 'Ca_26735_v3' => 'car', 'Cc01_g13130' => 'ccan', 'Cc02_g21690' => 'ccan', 'Cc03_g03600' => 'ccan', 'Cc06_g02510' => 'ccan', 'CDE02G1265' => 'cde', 'CDE05G0415' => 'cde', 'CDE08G1082' => 'cde', 'Cfa005780' => 'cfa', 'Cfa011522' => 'cfa', 'Cfa011523' => 'cfa', 'Cfa015627' => 'cfa', 'Cfa017359' => 'cfa', 'Ciclev10005687m.g' => 'ccl', 'Ciclev10012173m.g' => 'ccl', 'Ciclev10021621m.g' => 'ccl', 'Ciclev10028968m.g' => 'ccl', 'Ciclev10029907m.g' => 'ccl', 'CiPaw.01G164800' => 'cil', 'CiPaw.07G083700' => 'cil', 'CiPaw.07G127000' => 'cil', 'CiPaw.07G136900' => 'cil', 'CiPaw.08G081700' => 'cil', 'CiPaw.09G194600' => 'cil', 'CiPaw.10G146500' => 'cil', 'CiPaw.13G091500' => 'cil', 'CiPaw.13G091600' => 'cil', 'ClCG00G003390' => 'cla', 'ClCG01G007220' => 'cla', 'ClCG03G001370' => 'cla', 'ClCG04G008100' => 'cla', 'ClCG06G006110' => 'cla', 'ClCG06G006130' => 'cla', 'ClCG10G021210' => 'cla', 'COL.COLO4_07648' => 'col', 'COL.COLO4_07650' => 'col', 'COL.COLO4_07651' => 'col', 'COL.COLO4_14780' => 'col', 'COL.COLO4_18546' => 'col', 'COL.COLO4_18547' => 'col', 'COL.COLO4_23103' => 'col', 'COL.COLO4_30419' => 'col', 'COL.COLO4_34232' => 'col', 'Cpa.g.sc169.20' => 'cpa', 'Cpa.g.sc57.45' => 'cpa', 'Cpa.g.sc58.124' => 'cpa', 'Cpa.g.sc58.125' => 'cpa', 'Cpa.g.sc81.118' => 'cpa', 'Cpa.g.sc81.119' => 'cpa', 'Cre12.g524700' => 'cre', 'CsaV3_1G034430' => 'csa', 'CsaV3_1G034440' => 'csa', 'CsaV3_1G034450' => 'csa', 'CsaV3_3G034830' => 'csa', 'CsaV3_4G025090' => 'csa', 'CsaV3_5G018660' => 'csa', 'CsaV3_6G038160' => 'csa', 'CSS0003447' => 'camsi', 'CSS0017840' => 'camsi', 'CSS0019260' => 'camsi', 'CSS0040375' => 'camsi', 'CSS0042533' => 'camsi', 'DCAR_005960' => 'dca', 'DCAR_012104' => 'dca', 'DCAR_012105' => 'dca', 'DCAR_012293' => 'dca', 'DCAR_015632' => 'dca', 'DCAR_024602' => 'dca', 'DCAR_028752' => 'dca', 'Dinv06261' => 'din', 'Dinv13982' => 'din', 'Dinv17029' => 'din', 'Dinv18463' => 'din', 'Dinv33181' => 'din', 'Dinv35585' => 'din', 'Dinv37161' => 'din', 'Dinv42977' => 'din', 'Dinv43122' => 'din', 'Dinv44517' => 'din', 'Duzib093G0256' => 'dzi', 'Duzib106G1254' => 'dzi', 'Duzib128G1789' => 'dzi', 'Duzib133G0633' => 'dzi', 'Duzib138G0510' => 'dzi', 'Duzib150G1084' => 'dzi', 'Duzib168G0488' => 'dzi', 'Duzib168G1523' => 'dzi', 'Duzib170G0133' => 'dzi', 'ECA234G1433' => 'eca', 'ECA236G1432' => 'eca', 'ECA236G2256' => 'eca', 'ECA236G2365' => 'eca', 'ECA236G4830' => 'eca', 'ECA248G1505' => 'eca', 'EL10Ac3g06431' => 'bvu', 'EL10Ac5g12577' => 'bvu', 'EL10Ac6g13533' => 'bvu', 'EL10Ac7g16045' => 'bvu', 'Eucgr.A01281' => 'egr', 'Eucgr.B02326' => 'egr', 'Eucgr.H03532' => 'egr', 'Eucgr.K00553' => 'egr', 'Eucgr.K03116' => 'egr', 'FAN02G3963' => 'fan', 'FAN05G0438' => 'fan', 'FAN09G2434' => 'fan', 'FAN12G3984' => 'fan', 'FAN14G0798' => 'fan', 'FAN17G0652' => 'fan', 'FAN19G1988' => 'fan', 'FAN22G0632' => 'fan', 'FAN23G0387' => 'fan', 'FAN26G1323' => 'fan', 'FAN28G0666' => 'fan', 'FvH4_1g26080' => 'fve', 'FvH4_3g36780' => 'fve', 'FvH4_4g15270' => 'fve', 'FvH4_6g13490' => 'fve', 'Glyma.01G098700' => 'gma', 'Glyma.03G065900' => 'gma', 'Glyma.03G073754' => 'gma', 'Glyma.03G073758' => 'gma', 'Glyma.03G083200' => 'gma', 'Glyma.03G225500' => 'gma', 'Glyma.05G037766' => 'gma', 'Glyma.07G133500' => 'gma', 'Glyma.10G139400' => 'gma', 'Glyma.10G248900' => 'gma', 'Glyma.11G137800' => 'gma', 'Glyma.12G061300' => 'gma', 'Glyma.13G337900' => 'gma', 'Glyma.15G036600' => 'gma', 'Glyma.18G182800' => 'gma', 'Glyma.19G222500' => 'gma', 'Glyma.20G144800' => 'gma', 'Gohir.A01G222000' => 'ghi', 'Gohir.A03G044000' => 'ghi', 'Gohir.A03G044100' => 'ghi', 'Gohir.A04G083100' => 'ghi', 'Gohir.A07G127200' => 'ghi', 'Gohir.A07G132400' => 'ghi', 'Gohir.A08G000700' => 'ghi', 'Gohir.A11G327300' => 'ghi', 'Gohir.D01G211500' => 'ghi', 'Gohir.D03G123400' => 'ghi', 'Gohir.D03G123500' => 'ghi', 'Gohir.D04G121800' => 'ghi', 'Gohir.D07G131500' => 'ghi', 'Gohir.D07G136600' => 'ghi', 'Gohir.D08G011600' => 'ghi', 'Gohir.D11G346200' => 'ghi', 'Gorai.001G142800' => 'gra', 'Gorai.001G148700' => 'gra', 'Gorai.002G257300' => 'gra', 'Gorai.003G130000' => 'gra', 'Gorai.003G130100' => 'gra', 'Gorai.004G005300' => 'gra', 'Gorai.007G376500' => 'gra', 'Gorai.012G104700' => 'gra', 'GSVIVG01017946001' => 'vvi', 'GSVIVG01024928001' => 'vvi', 'GSVIVG01028227001' => 'vvi', 'GSVIVG01034151001' => 'vvi', 'HanXRQChr05g0135031' => 'han', 'HanXRQChr05g0135041' => 'han', 'HanXRQChr05g0140021' => 'han', 'HanXRQChr06g0178981' => 'han', 'HanXRQChr07g0188251' => 'han', 'HanXRQChr08g0235311' => 'han', 'HanXRQChr09g0271011' => 'han', 'HanXRQChr10g0293321' => 'han', 'HanXRQChr13g0388171' => 'han', 'Haze_00916' => 'cav', 'Haze_05063' => 'cav', 'Haze_20814' => 'cav', 'Haze_24128' => 'cav', 'Hma1.2p1_0745F.1_g212010' => 'hma', 'Hma1.2p1_0757F.1_g213260' => 'hma', 'Hma1.2p1_0936F.1_g238840' => 'hma', 'Hma1.2p1_1735F.1_g299890' => 'hma', 'Hma1.2p1_1861F.1_g305685' => 'hma', 'HPP92_003397' => 'vpl', 'HPP92_012597' => 'vpl', 'HPP92_015520' => 'vpl', 'HPP92_015539' => 'vpl', 'HPP92_020373' => 'vpl', 'Hund04938' => 'sun', 'Hund10677' => 'sun', 'Hund11033' => 'sun', 'Hund12155' => 'sun', 'Lalb_Chr01g0022551' => 'lal', 'Lalb_Chr03g0042341' => 'lal', 'Lalb_Chr07g0192931' => 'lal', 'Lalb_Chr12g0209551' => 'lal', 'Lalb_Chr19g0125251' => 'lal', 'Lalb_Chr19g0137891' => 'lal', 'Lalb_Chr21g0304641' => 'lal', 'Lalb_Chr21g0309881' => 'lal', 'Lj1A5T12' => 'lonja', 'Lj1C148G10' => 'lonja', 'Lj2A93T83' => 'lonja', 'Lj3A738G68' => 'lonja', 'Lj3C966T1' => 'lonja', 'Lj3g0018958' => 'lja', 'Lj3g0021831' => 'lja', 'Lj3g0025443' => 'lja', 'Lj4g0026809' => 'lja', 'Lj5g0012558' => 'lja', 'Lj5g0021586' => 'lja', 'Lsat_1_v5_gn_5_156840' => 'lsa', 'Lsat_1_v5_gn_8_73460' => 'lsa', 'Lsat_1_v5_gn_8_73481' => 'lsa', 'Lsat_1_v5_gn_9_31601' => 'lsa', 'Lsat_1_v5_gn_9_77320' => 'lsa', 'Manes.01G171300' => 'mes', 'Manes.01G171400' => 'mes', 'Manes.01G236100' => 'mes', 'Manes.02G130500' => 'mes', 'Manes.02G130600' => 'mes', 'Manes.03G180200' => 'mes', 'Manes.05G007000' => 'mes', 'Manes.08G084400' => 'mes', 'Manes.09G092600' => 'mes', 'Manes.15G027900' => 'mes', 'MBI04_g40948_MAGBIO' => 'mbi', 'MBI14_g12123_MAGBIO' => 'mbi', 'MBI18_g28915_MAGBIO' => 'mbi', 'MCO09G053' => 'mco', 'MCO11G782' => 'mco', 'MCO15G215' => 'mco', 'MD03G1088500' => 'mdo', 'MD03G1088600' => 'mdo', 'MD04G1130800' => 'mdo', 'MD09G1291700' => 'mdo', 'MD11G1097500' => 'mdo', 'MD11G1097600' => 'mdo', 'MD12G1143900' => 'mdo', 'MD13G1191400' => 'mdo', 'MD16G1191500' => 'mdo', 'Medtr1g085570' => 'mtr', 'Medtr1g104610' => 'mtr', 'Medtr2g097520' => 'mtr', 'Medtr4g021800' => 'mtr', 'Medtr4g021825' => 'mtr', 'Medtr4g064270' => 'mtr', 'Medtr4g064380' => 'mtr', 'Medtr7g062150' => 'mtr', 'MELO3C003138.2' => 'cme', 'MELO3C005187.2' => 'cme', 'MELO3C009252.2' => 'cme', 'MELO3C014481.2' => 'cme', 'MELO3C020616.2' => 'cme', 'MELO3C020617.2' => 'cme', 'MELO3C020618.2' => 'cme', 'Migut.G00328' => 'egut', 'Migut.J00320' => 'egut', 'Migut.L01000' => 'egut', 'Migut.L01953' => 'egut', 'MSTRG.10253' => 'ama', 'MSTRG.19077' => 'ama', 'MSTRG.26780' => 'ama', 'MSTRG.4023' => 'ama', 'MSTRG.5655' => 'ama', 'MSTRG.9992' => 'ama', 'Nitab4.5_0000043g0310' => 'nta', 'Nitab4.5_0000463g0080' => 'nta', 'Nitab4.5_0000705g0170' => 'nta', 'Nitab4.5_0001326g0060' => 'nta', 'Nitab4.5_0001628g0030' => 'nta', 'Nitab4.5_0002103g0110' => 'nta', 'Nitab4.5_0002946g0030' => 'nta', 'Nitab4.5_0004639g0030' => 'nta', 'Nn2g11149' => 'nnu', 'Nn2g13389' => 'nnu', 'Nn4g25326' => 'nnu', 'Nn4g26290' => 'nnu', 'Nn5g29865' => 'nnu', 'Oeu004163.1' => 'oeu', 'Oeu006901.1' => 'oeu', 'Oeu010096.1' => 'oeu', 'Oeu024340.1' => 'oeu', 'Oeu048369.1' => 'oeu', 'Os01g0973000' => 'osa', 'Os03g0273800' => 'osa', 'Os03g0701200' => 'osa', 'Os03g0834050' => 'osa', 'Os07g0634400' => 'osa', 'Peaxi162Scf00092g01414' => 'pax', 'Peaxi162Scf00165g00818' => 'pax', 'Peaxi162Scf00309g00516' => 'pax', 'Peaxi162Scf00774g00218' => 'pax', 'PGR004G1824' => 'pgr', 'PGR004G2606' => 'pgr', 'PGR031G2716' => 'pgr', 'PGR102G2460' => 'pgr', 'PGR142G2599' => 'pgr', 'PGSC0003DMG400000843' => 'stu', 'PGSC0003DMG400008829' => 'stu', 'PGSC0003DMG400030418' => 'stu', 'PGSC0003DMG400031834' => 'stu', 'PGSC0003DMG401028300' => 'stu', 'PGSC0003DMG402028300' => 'stu', 'Phvul.001G219300' => 'pvu', 'Phvul.007G056000' => 'pvu', 'Phvul.007G208000' => 'pvu', 'Phvul.008G119500' => 'pvu', 'Phvul.010G011200' => 'pvu', 'Phvul.010G014800' => 'pvu', 'Phvul.011G062900' => 'pvu', 'Phvul.L007043' => 'pvu', 'Potri.001G242300' => 'ptr', 'Potri.002G185300' => 'ptr', 'Potri.006G086900' => 'ptr', 'Potri.008G151700' => 'ptr', 'Potri.009G033500' => 'ptr', 'Potri.010G089300' => 'ptr', 'Potri.014G110800' => 'ptr', 'Pp3c27_8130' => 'ppa', 'Pp3c6_27410' => 'ppa', 'PRCOL_00001659' => 'pco', 'PRCOL_00001927' => 'pco', 'PRCOL_00003649' => 'pco', 'Prupe.1G011600' => 'ppe', 'Prupe.3G000800' => 'ppe', 'Prupe.3G001100' => 'ppe', 'Prupe.6G072700' => 'ppe', 'Prupe.6G072800' => 'ppe', 'Prupe.6G257300' => 'ppe', 'Prupe.8G033000' => 'ppe', 'Psat0s2633g0080' => 'psa', 'Psat0s3396g0080' => 'psa', 'Psat0s3396g0200' => 'psa', 'Psat3g139080' => 'psa', 'Psat5g285080' => 'psa', 'Psat6g157760' => 'psa', 'Psat6g208440' => 'psa', 'Psat7g215320' => 'psa', 'Psat7g215400' => 'psa', 'Psat7g235600' => 'psa', 'Psat7g235760' => 'psa', 'PSO063G4603' => 'pso', 'PSO210G0182' => 'pso', 'PSO210G0196' => 'pso', 'PSO339G0394' => 'pso', 'PSO339G4127' => 'pso', 'PSO513G0064' => 'pso', 'PSO761G0079' => 'pso', 'QL01p031003' => 'qlo', 'QL01p031078' => 'qlo', 'QL06p003004' => 'qlo', 'QL07p048731' => 'qlo', 'QL09p037427' => 'qlo', 'RcHm_v2.0_Chr3g0466361' => 'rch', 'RcHm_v2.0_Chr3g0485571' => 'rch', 'RcHm_v2.0_Chr4g0416551' => 'rch', 'RcHm_v2.0_Chr5g0065831' => 'rch', 'Rhsim01G0230500' => 'rsi', 'Rhsim05G0194000' => 'rsi', 'Rhsim08G0250400' => 'rsi', 'Sabra02G0131000' => 'sbr', 'Sabra06G0066300' => 'sbr', 'Sabra08G0115500' => 'sbr', 'Sabra09G0023900' => 'sbr', 'Sabra10G0054000' => 'sbr', 'Sabra14G0081500' => 'sbr', 'Sabra16G0147100' => 'sbr', 'SalBow2G2957' => 'sbo', 'SalBow4G3320' => 'sbo', 'SalBow8G1894' => 'sbo', 'Sc07g0007950' => 'sci', 'Sc12g0001360' => 'sci', 'Sc13g0004330' => 'sci', 'Sc20g0005010' => 'sci', 'Sed0000361' => 'sed', 'Sed0001706' => 'sed', 'Sed0002422' => 'sed', 'Sed0004029' => 'sed', 'Sed0004602' => 'sed', 'Sed0004943' => 'sed', 'Sed0008646' => 'sed', 'Sed0023313' => 'sed', 'Sed0024843' => 'sed', 'SEGI_00081' => 'sgi', 'SEGI_00947' => 'sgi', 'SEGI_04046' => 'sgi', 'SEGI_06880' => 'sgi', 'SEGI_09736' => 'sgi', 'SEGI_12741' => 'sgi', 'SEGI_14530' => 'sgi', 'SEGI_20705' => 'sgi', 'SEGI_26088' => 'sgi', 'SEGI_28323' => 'sgi', 'SEGI_33343' => 'sgi', 'SGA_v2.0_scaffold126G33775' => 'sas', 'SGA_v2.0_scaffold2G01337' => 'sas', 'SGA_v2.0_scaffold38G15006' => 'sas', 'SGA_v2.0_scaffold39G15264' => 'sas', 'SGA_v2.0_scaffold453G51880' => 'sas', 'SHI12696' => 'shi', 'SMO367G1096' => 'smo', 'Solyc01g068630.3' => 'sly', 'Solyc05g011880.3' => 'sly', 'Solyc06g076300.3' => 'sly', 'Solyc09g010940.4' => 'sly', 'Solyc09g075890.3' => 'sly', 'Sopen01g030560' => 'spe', 'Sopen05g006630' => 'spe', 'Sopen06g032720' => 'spe', 'Sopen09g005660' => 'spe', 'Sopen09g030690' => 'spe', 'Sp4g14540' => 'spa', 'Sp4g20030' => 'spa', 'Sp5g01320' => 'spa', 'Sp6g21170' => 'spa', 'Sp6g21180' => 'spa', 'Sp6g21190' => 'spa', 'Sp6g40220' => 'spa', 'TAR362G0122' => 'tar', 'TAR362G1338' => 'tar', 'TAR369G0590' => 'tar', 'TAR371G0824' => 'tar', 'TAR622G1429' => 'tar', 'TAR623G0734' => 'tar', 'TAR625G0441' => 'tar', 'TAR629G0976' => 'tar', 'TAR633G1195' => 'tar', 'TAR636G2660' => 'tar', 'THA.LOC104799440' => 'tha', 'THA.LOC104800966' => 'tha', 'THA.LOC104806559' => 'tha', 'THA.LOC104810765' => 'tha', 'THA.LOC104816266' => 'tha', 'THA.LOC104817419' => 'tha', 'THA.LOC104827021' => 'tha', 'Thecc.01G327400' => 'tca', 'Thecc.04G229200' => 'tca', 'Thecc.05G037400' => 'tca', 'Thecc.09G318600' => 'tca', 'Thecc.09G318700' => 'tca', 'Thhalv10006238m.g' => 'esa', 'Thhalv10014321m.g' => 'esa', 'Thhalv10014335m.g' => 'esa', 'Thhalv10015826m.g' => 'esa', 'Thhalv10017107m.g' => 'esa', 'Thhalv10017180m.g' => 'esa', 'Thhalv10029339m.g' => 'esa', 'TPR.G1699' => 'tpr', 'TPR.G23609' => 'tpr', 'TPR.G3081' => 'tpr', 'TPR.G40397' => 'tpr', 'TPR.G5522' => 'tpr', 'TPR.G5618' => 'tpr', 'TPR.G5626' => 'tpr', 'TWI09G1632' => 'twi', 'TWI23G1230' => 'twi', 'TWI53G1064' => 'twi', 'TWI59G0751' => 'twi', 'TWI74G0947' => 'twi', 'TWI77G0337' => 'twi', 'TWI79G1254' => 'twi', 'unitig_0.g2341' => 'ugi', 'unitig_26.g10006' => 'ugi', 'unitig_26.g10008' => 'ugi', 'unitig_26.g9192' => 'ugi', 'vmacro14547' => 'vma', 'vmacro15333' => 'vma', 'vmacro18743' => 'vma', 'vmacro20166' => 'vma', 'VMungo0331G0523' => 'vmu', 'VMungo0331G1202' => 'vmu', 'VMungo0720G1228' => 'vmu', 'VMungo0720G1514' => 'vmu', 'VMungo1080G0169' => 'vmu', 'VMungo1127G1475' => 'vmu', 'VMungo1383G1208' => 'vmu', 'VMungo1383G1698' => 'vmu', 'Zm00001eb012270' => 'zma', 'Zm00001eb054100' => 'zma', 'Zm00001eb063350' => 'zma', 'Zm00001eb328560' => 'zma', 'Zm00001eb342820' => 'zma', 'Zm00001eb362210' => 'zma', 'Zm00001eb397730' => 'zma', 'Zm00001eb399750' => 'zma' ) $gf_id = 'HOM05D000959' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000959' ) $data_identifier = 'HOM05D000959' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 5, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 5, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 10, 'mbi' => (int) 3, 'mco' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 2, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 3, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 11, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399750' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000959', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '622', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p07100' => 'bna', 'A03p11720' => 'bna', 'A05p08300' => 'bna', 'A05p13380' => 'bna', 'A09p54130' => 'bna', 'A10p16690' => 'bna', 'A10p16700' => 'bna', 'A10p33390' => 'bna', 'Aa31LG10G16020' => 'aar', 'Aa31LG1G11810' => 'aar', 'Aa31LG1G11830' => 'aar', 'Aa31LG1G22510' => 'aar', 'Aa31LG5G4890' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5793' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2310' => 'aag', 'Actinidia08499' => 'ach', 'Actinidia11262' => 'ach', 'Actinidia23926' => 'ach', 'Actinidia34420' => 'ach', 'Actinidia36970' => 'ach', 'Ah.02g111220' => 'amhyb', 'Ah.15g097750' => 'amhyb', 'AL4G27500' => 'aly', 'AL6G11470' => 'aly', 'AL8G35950' => 'aly', 'AL8G35960' => 'aly', 'AL8G35970' => 'aly', 'Aqoxy1G00912' => 'aox', 'Aqoxy2G02253' => 'aox', 'Aqoxy2G02411' => 'aox', 'Aqoxy5G00485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BZ66YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K8ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM4FUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6BF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HFV7XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25JBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0YNNV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MAKK6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P70IT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP2Z6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V61LZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YWP64R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3S9AI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7PGHH' => 'arhy', 'AT2G32150' => 'ath', 'AT3G62040' => 'ath', 'AT5G02230' => 'ath', 'AT5G59480' => 'ath', 'AT5G59490' => 'ath', 'ATR0332G060' => 'atr', 'ATR0559G190' => 'atr', 'ATR0693G294' => 'atr', 'Atru.chr3.3975' => 'acertr', 'Atru.chr3.3976' => 'acertr', 'Atru.chr3.3977' => 'acertr', 'Atru.chr4.2498' => 'acertr', 'Atru.chr5.838' => 'acertr', 'Atru.chr8.1990' => 'acertr', 'Atru.chr8.1991' => 'acertr', 'Atru.chr8.1992' => 'acertr', 'AUR62001759' => 'cqu', 'AUR62009545' => 'cqu', 'AUR62010474' => 'cqu', 'AUR62025820' => 'cqu', 'AUR62030422' => 'cqu', 'AUR62033605' => 'cqu', 'AUR62038615' => 'cqu', 'AUR62041347' => 'cqu', 'BcaB01g04574' => 'bca', 'BcaB02g09263' => 'bca', 'BcaB02g10453' => 'bca', 'BcaB05g22513' => 'bca', 'BcaB08g36253' => 'bca', 'BcaB08g36254' => 'bca', 'BcaC01g06519' => 'bca', 'BcaC02g11889' => 'bca', 'BcaC03g14010' => 'bca', 'BcaC03g18439' => 'bca', 'BcaC04g19765' => 'bca', 'BcaC09g48432' => 'bca', 'BcaNung07302' => 'bca', 'BolC2t06040H' => 'bol', 'BolC2t07346H' => 'bol', 'BolC3t13817H' => 'bol', 'BolC4t22625H' => 'bol', 'BolC4t23297H' => 'bol', 'BolC8t51278H' => 'bol', 'BolC9t58050H' => 'bol', 'BolC9t58051H' => 'bol', 'BolC9t60163H' => 'bol', 'BraA02t04712Z' => 'bra', 'BraA02t05791Z' => 'bra', 'BraA03t10483Z' => 'bra', 'BraA05t19795Z' => 'bra', 'BraA05t20276Z' => 'bra', 'BraA09t40827Z' => 'bra', 'BraA10t43750Z' => 'bra', 'BraA10t43751Z' => 'bra', 'BraA10t45370Z' => 'bra', 'C02p00400' => 'bna', 'C02p12460' => 'bna', 'C03p13680' => 'bna', 'C04p10270' => 'bna', 'C04p17500' => 'bna', 'C08p37010' => 'bna', 'C09p51880' => 'bna', 'C09p51890' => 'bna', 'C09p74300' => 'bna', 'CAN.G179.26' => 'can', 'CAN.G3384.1' => 'can', 'CAN.G394.68' => 'can', 'CAN.G907.13' => 'can', 'CANSAT11G0012' => 'cansat', 'CANSAT25G1586' => 'cansat', 'CANSAT35G0735' => 'cansat', 'CANSAT54G0556' => 'cansat', 'CANSAT64G0356' => 'cansat', 'CANSAT78G2042' => 'cansat', 'CARHR125920' => 'chi', 'CARHR131910' => 'chi', 'CARHR172390' => 'chi', 'CARHR211140' => 'chi', 'CARHR285850' => 'chi', 'CARHR285860' => 'chi', 'Carub.0004s1347' => 'cru', 'Carub.0004s1960' => 'cru', 'Carub.0005s2880' => 'cru', 'Carub.0006s0107' => 'cru', 'Carub.0008s2015' => 'cru', 'Carub.0008s2016' => 'cru', 'Carub.0008s2017' => 'cru', 'Ca_01315_v3' => 'car', 'Ca_05063_v3' => 'car', 'Ca_10231_v3' => 'car', 'Ca_10913_v3' => 'car', 'Ca_19156_v3' => 'car', 'Ca_23644_v3' => 'car', 'Ca_26735_v3' => 'car', 'Cc01_g13130' => 'ccan', 'Cc02_g21690' => 'ccan', 'Cc03_g03600' => 'ccan', 'Cc06_g02510' => 'ccan', 'CDE02G1265' => 'cde', 'CDE05G0415' => 'cde', 'CDE08G1082' => 'cde', 'Cfa005780' => 'cfa', 'Cfa011522' => 'cfa', 'Cfa011523' => 'cfa', 'Cfa015627' => 'cfa', 'Cfa017359' => 'cfa', 'Ciclev10005687m.g' => 'ccl', 'Ciclev10012173m.g' => 'ccl', 'Ciclev10021621m.g' => 'ccl', 'Ciclev10028968m.g' => 'ccl', 'Ciclev10029907m.g' => 'ccl', 'CiPaw.01G164800' => 'cil', 'CiPaw.07G083700' => 'cil', 'CiPaw.07G127000' => 'cil', 'CiPaw.07G136900' => 'cil', 'CiPaw.08G081700' => 'cil', 'CiPaw.09G194600' => 'cil', 'CiPaw.10G146500' => 'cil', 'CiPaw.13G091500' => 'cil', 'CiPaw.13G091600' => 'cil', 'ClCG00G003390' => 'cla', 'ClCG01G007220' => 'cla', 'ClCG03G001370' => 'cla', 'ClCG04G008100' => 'cla', 'ClCG06G006110' => 'cla', 'ClCG06G006130' => 'cla', 'ClCG10G021210' => 'cla', 'COL.COLO4_07648' => 'col', 'COL.COLO4_07650' => 'col', 'COL.COLO4_07651' => 'col', 'COL.COLO4_14780' => 'col', 'COL.COLO4_18546' => 'col', 'COL.COLO4_18547' => 'col', 'COL.COLO4_23103' => 'col', 'COL.COLO4_30419' => 'col', 'COL.COLO4_34232' => 'col', 'Cpa.g.sc169.20' => 'cpa', 'Cpa.g.sc57.45' => 'cpa', 'Cpa.g.sc58.124' => 'cpa', 'Cpa.g.sc58.125' => 'cpa', 'Cpa.g.sc81.118' => 'cpa', 'Cpa.g.sc81.119' => 'cpa', 'Cre12.g524700' => 'cre', 'CsaV3_1G034430' => 'csa', 'CsaV3_1G034440' => 'csa', 'CsaV3_1G034450' => 'csa', 'CsaV3_3G034830' => 'csa', 'CsaV3_4G025090' => 'csa', 'CsaV3_5G018660' => 'csa', 'CsaV3_6G038160' => 'csa', 'CSS0003447' => 'camsi', 'CSS0017840' => 'camsi', 'CSS0019260' => 'camsi', 'CSS0040375' => 'camsi', 'CSS0042533' => 'camsi', 'DCAR_005960' => 'dca', 'DCAR_012104' => 'dca', 'DCAR_012105' => 'dca', 'DCAR_012293' => 'dca', 'DCAR_015632' => 'dca', 'DCAR_024602' => 'dca', 'DCAR_028752' => 'dca', 'Dinv06261' => 'din', 'Dinv13982' => 'din', 'Dinv17029' => 'din', 'Dinv18463' => 'din', 'Dinv33181' => 'din', 'Dinv35585' => 'din', 'Dinv37161' => 'din', 'Dinv42977' => 'din', 'Dinv43122' => 'din', 'Dinv44517' => 'din', 'Duzib093G0256' => 'dzi', 'Duzib106G1254' => 'dzi', 'Duzib128G1789' => 'dzi', 'Duzib133G0633' => 'dzi', 'Duzib138G0510' => 'dzi', 'Duzib150G1084' => 'dzi', 'Duzib168G0488' => 'dzi', 'Duzib168G1523' => 'dzi', 'Duzib170G0133' => 'dzi', 'ECA234G1433' => 'eca', 'ECA236G1432' => 'eca', 'ECA236G2256' => 'eca', 'ECA236G2365' => 'eca', 'ECA236G4830' => 'eca', 'ECA248G1505' => 'eca', 'EL10Ac3g06431' => 'bvu', 'EL10Ac5g12577' => 'bvu', 'EL10Ac6g13533' => 'bvu', 'EL10Ac7g16045' => 'bvu', 'Eucgr.A01281' => 'egr', 'Eucgr.B02326' => 'egr', 'Eucgr.H03532' => 'egr', 'Eucgr.K00553' => 'egr', 'Eucgr.K03116' => 'egr', 'FAN02G3963' => 'fan', 'FAN05G0438' => 'fan', 'FAN09G2434' => 'fan', 'FAN12G3984' => 'fan', 'FAN14G0798' => 'fan', 'FAN17G0652' => 'fan', 'FAN19G1988' => 'fan', 'FAN22G0632' => 'fan', 'FAN23G0387' => 'fan', 'FAN26G1323' => 'fan', 'FAN28G0666' => 'fan', 'FvH4_1g26080' => 'fve', 'FvH4_3g36780' => 'fve', 'FvH4_4g15270' => 'fve', 'FvH4_6g13490' => 'fve', 'Glyma.01G098700' => 'gma', 'Glyma.03G065900' => 'gma', 'Glyma.03G073754' => 'gma', 'Glyma.03G073758' => 'gma', 'Glyma.03G083200' => 'gma', 'Glyma.03G225500' => 'gma', 'Glyma.05G037766' => 'gma', 'Glyma.07G133500' => 'gma', 'Glyma.10G139400' => 'gma', 'Glyma.10G248900' => 'gma', 'Glyma.11G137800' => 'gma', 'Glyma.12G061300' => 'gma', 'Glyma.13G337900' => 'gma', 'Glyma.15G036600' => 'gma', 'Glyma.18G182800' => 'gma', 'Glyma.19G222500' => 'gma', 'Glyma.20G144800' => 'gma', 'Gohir.A01G222000' => 'ghi', 'Gohir.A03G044000' => 'ghi', 'Gohir.A03G044100' => 'ghi', 'Gohir.A04G083100' => 'ghi', 'Gohir.A07G127200' => 'ghi', 'Gohir.A07G132400' => 'ghi', 'Gohir.A08G000700' => 'ghi', 'Gohir.A11G327300' => 'ghi', 'Gohir.D01G211500' => 'ghi', 'Gohir.D03G123400' => 'ghi', 'Gohir.D03G123500' => 'ghi', 'Gohir.D04G121800' => 'ghi', 'Gohir.D07G131500' => 'ghi', 'Gohir.D07G136600' => 'ghi', 'Gohir.D08G011600' => 'ghi', 'Gohir.D11G346200' => 'ghi', 'Gorai.001G142800' => 'gra', 'Gorai.001G148700' => 'gra', 'Gorai.002G257300' => 'gra', 'Gorai.003G130000' => 'gra', 'Gorai.003G130100' => 'gra', 'Gorai.004G005300' => 'gra', 'Gorai.007G376500' => 'gra', 'Gorai.012G104700' => 'gra', 'GSVIVG01017946001' => 'vvi', 'GSVIVG01024928001' => 'vvi', 'GSVIVG01028227001' => 'vvi', 'GSVIVG01034151001' => 'vvi', 'HanXRQChr05g0135031' => 'han', 'HanXRQChr05g0135041' => 'han', 'HanXRQChr05g0140021' => 'han', 'HanXRQChr06g0178981' => 'han', 'HanXRQChr07g0188251' => 'han', 'HanXRQChr08g0235311' => 'han', 'HanXRQChr09g0271011' => 'han', 'HanXRQChr10g0293321' => 'han', 'HanXRQChr13g0388171' => 'han', 'Haze_00916' => 'cav', 'Haze_05063' => 'cav', 'Haze_20814' => 'cav', 'Haze_24128' => 'cav', 'Hma1.2p1_0745F.1_g212010' => 'hma', 'Hma1.2p1_0757F.1_g213260' => 'hma', 'Hma1.2p1_0936F.1_g238840' => 'hma', 'Hma1.2p1_1735F.1_g299890' => 'hma', 'Hma1.2p1_1861F.1_g305685' => 'hma', 'HPP92_003397' => 'vpl', 'HPP92_012597' => 'vpl', 'HPP92_015520' => 'vpl', 'HPP92_015539' => 'vpl', 'HPP92_020373' => 'vpl', 'Hund04938' => 'sun', 'Hund10677' => 'sun', 'Hund11033' => 'sun', 'Hund12155' => 'sun', 'Lalb_Chr01g0022551' => 'lal', 'Lalb_Chr03g0042341' => 'lal', 'Lalb_Chr07g0192931' => 'lal', 'Lalb_Chr12g0209551' => 'lal', 'Lalb_Chr19g0125251' => 'lal', 'Lalb_Chr19g0137891' => 'lal', 'Lalb_Chr21g0304641' => 'lal', 'Lalb_Chr21g0309881' => 'lal', 'Lj1A5T12' => 'lonja', 'Lj1C148G10' => 'lonja', 'Lj2A93T83' => 'lonja', 'Lj3A738G68' => 'lonja', 'Lj3C966T1' => 'lonja', 'Lj3g0018958' => 'lja', 'Lj3g0021831' => 'lja', 'Lj3g0025443' => 'lja', 'Lj4g0026809' => 'lja', 'Lj5g0012558' => 'lja', 'Lj5g0021586' => 'lja', 'Lsat_1_v5_gn_5_156840' => 'lsa', 'Lsat_1_v5_gn_8_73460' => 'lsa', 'Lsat_1_v5_gn_8_73481' => 'lsa', 'Lsat_1_v5_gn_9_31601' => 'lsa', 'Lsat_1_v5_gn_9_77320' => 'lsa', 'Manes.01G171300' => 'mes', 'Manes.01G171400' => 'mes', 'Manes.01G236100' => 'mes', 'Manes.02G130500' => 'mes', 'Manes.02G130600' => 'mes', 'Manes.03G180200' => 'mes', 'Manes.05G007000' => 'mes', 'Manes.08G084400' => 'mes', 'Manes.09G092600' => 'mes', 'Manes.15G027900' => 'mes', 'MBI04_g40948_MAGBIO' => 'mbi', 'MBI14_g12123_MAGBIO' => 'mbi', 'MBI18_g28915_MAGBIO' => 'mbi', 'MCO09G053' => 'mco', 'MCO11G782' => 'mco', 'MCO15G215' => 'mco', 'MD03G1088500' => 'mdo', 'MD03G1088600' => 'mdo', 'MD04G1130800' => 'mdo', 'MD09G1291700' => 'mdo', 'MD11G1097500' => 'mdo', 'MD11G1097600' => 'mdo', 'MD12G1143900' => 'mdo', 'MD13G1191400' => 'mdo', 'MD16G1191500' => 'mdo', 'Medtr1g085570' => 'mtr', 'Medtr1g104610' => 'mtr', 'Medtr2g097520' => 'mtr', 'Medtr4g021800' => 'mtr', 'Medtr4g021825' => 'mtr', 'Medtr4g064270' => 'mtr', 'Medtr4g064380' => 'mtr', 'Medtr7g062150' => 'mtr', 'MELO3C003138.2' => 'cme', 'MELO3C005187.2' => 'cme', 'MELO3C009252.2' => 'cme', 'MELO3C014481.2' => 'cme', 'MELO3C020616.2' => 'cme', 'MELO3C020617.2' => 'cme', 'MELO3C020618.2' => 'cme', 'Migut.G00328' => 'egut', 'Migut.J00320' => 'egut', 'Migut.L01000' => 'egut', 'Migut.L01953' => 'egut', 'MSTRG.10253' => 'ama', 'MSTRG.19077' => 'ama', 'MSTRG.26780' => 'ama', 'MSTRG.4023' => 'ama', 'MSTRG.5655' => 'ama', 'MSTRG.9992' => 'ama', 'Nitab4.5_0000043g0310' => 'nta', 'Nitab4.5_0000463g0080' => 'nta', 'Nitab4.5_0000705g0170' => 'nta', 'Nitab4.5_0001326g0060' => 'nta', 'Nitab4.5_0001628g0030' => 'nta', 'Nitab4.5_0002103g0110' => 'nta', 'Nitab4.5_0002946g0030' => 'nta', 'Nitab4.5_0004639g0030' => 'nta', 'Nn2g11149' => 'nnu', 'Nn2g13389' => 'nnu', 'Nn4g25326' => 'nnu', 'Nn4g26290' => 'nnu', 'Nn5g29865' => 'nnu', 'Oeu004163.1' => 'oeu', 'Oeu006901.1' => 'oeu', 'Oeu010096.1' => 'oeu', 'Oeu024340.1' => 'oeu', 'Oeu048369.1' => 'oeu', 'Os01g0973000' => 'osa', 'Os03g0273800' => 'osa', 'Os03g0701200' => 'osa', 'Os03g0834050' => 'osa', 'Os07g0634400' => 'osa', 'Peaxi162Scf00092g01414' => 'pax', 'Peaxi162Scf00165g00818' => 'pax', 'Peaxi162Scf00309g00516' => 'pax', 'Peaxi162Scf00774g00218' => 'pax', 'PGR004G1824' => 'pgr', 'PGR004G2606' => 'pgr', 'PGR031G2716' => 'pgr', 'PGR102G2460' => 'pgr', 'PGR142G2599' => 'pgr', 'PGSC0003DMG400000843' => 'stu', 'PGSC0003DMG400008829' => 'stu', 'PGSC0003DMG400030418' => 'stu', 'PGSC0003DMG400031834' => 'stu', 'PGSC0003DMG401028300' => 'stu', 'PGSC0003DMG402028300' => 'stu', 'Phvul.001G219300' => 'pvu', 'Phvul.007G056000' => 'pvu', 'Phvul.007G208000' => 'pvu', 'Phvul.008G119500' => 'pvu', 'Phvul.010G011200' => 'pvu', 'Phvul.010G014800' => 'pvu', 'Phvul.011G062900' => 'pvu', 'Phvul.L007043' => 'pvu', 'Potri.001G242300' => 'ptr', 'Potri.002G185300' => 'ptr', 'Potri.006G086900' => 'ptr', 'Potri.008G151700' => 'ptr', 'Potri.009G033500' => 'ptr', 'Potri.010G089300' => 'ptr', 'Potri.014G110800' => 'ptr', 'Pp3c27_8130' => 'ppa', 'Pp3c6_27410' => 'ppa', 'PRCOL_00001659' => 'pco', 'PRCOL_00001927' => 'pco', 'PRCOL_00003649' => 'pco', 'Prupe.1G011600' => 'ppe', 'Prupe.3G000800' => 'ppe', 'Prupe.3G001100' => 'ppe', 'Prupe.6G072700' => 'ppe', 'Prupe.6G072800' => 'ppe', 'Prupe.6G257300' => 'ppe', 'Prupe.8G033000' => 'ppe', 'Psat0s2633g0080' => 'psa', 'Psat0s3396g0080' => 'psa', 'Psat0s3396g0200' => 'psa', 'Psat3g139080' => 'psa', 'Psat5g285080' => 'psa', 'Psat6g157760' => 'psa', 'Psat6g208440' => 'psa', 'Psat7g215320' => 'psa', 'Psat7g215400' => 'psa', 'Psat7g235600' => 'psa', 'Psat7g235760' => 'psa', 'PSO063G4603' => 'pso', 'PSO210G0182' => 'pso', 'PSO210G0196' => 'pso', 'PSO339G0394' => 'pso', 'PSO339G4127' => 'pso', 'PSO513G0064' => 'pso', 'PSO761G0079' => 'pso', 'QL01p031003' => 'qlo', 'QL01p031078' => 'qlo', 'QL06p003004' => 'qlo', 'QL07p048731' => 'qlo', 'QL09p037427' => 'qlo', 'RcHm_v2.0_Chr3g0466361' => 'rch', 'RcHm_v2.0_Chr3g0485571' => 'rch', 'RcHm_v2.0_Chr4g0416551' => 'rch', 'RcHm_v2.0_Chr5g0065831' => 'rch', 'Rhsim01G0230500' => 'rsi', 'Rhsim05G0194000' => 'rsi', 'Rhsim08G0250400' => 'rsi', 'Sabra02G0131000' => 'sbr', 'Sabra06G0066300' => 'sbr', 'Sabra08G0115500' => 'sbr', 'Sabra09G0023900' => 'sbr', 'Sabra10G0054000' => 'sbr', 'Sabra14G0081500' => 'sbr', 'Sabra16G0147100' => 'sbr', 'SalBow2G2957' => 'sbo', 'SalBow4G3320' => 'sbo', 'SalBow8G1894' => 'sbo', 'Sc07g0007950' => 'sci', 'Sc12g0001360' => 'sci', 'Sc13g0004330' => 'sci', 'Sc20g0005010' => 'sci', 'Sed0000361' => 'sed', 'Sed0001706' => 'sed', 'Sed0002422' => 'sed', 'Sed0004029' => 'sed', 'Sed0004602' => 'sed', 'Sed0004943' => 'sed', 'Sed0008646' => 'sed', 'Sed0023313' => 'sed', 'Sed0024843' => 'sed', 'SEGI_00081' => 'sgi', 'SEGI_00947' => 'sgi', 'SEGI_04046' => 'sgi', 'SEGI_06880' => 'sgi', 'SEGI_09736' => 'sgi', 'SEGI_12741' => 'sgi', 'SEGI_14530' => 'sgi', 'SEGI_20705' => 'sgi', 'SEGI_26088' => 'sgi', 'SEGI_28323' => 'sgi', 'SEGI_33343' => 'sgi', 'SGA_v2.0_scaffold126G33775' => 'sas', 'SGA_v2.0_scaffold2G01337' => 'sas', 'SGA_v2.0_scaffold38G15006' => 'sas', 'SGA_v2.0_scaffold39G15264' => 'sas', 'SGA_v2.0_scaffold453G51880' => 'sas', 'SHI12696' => 'shi', 'SMO367G1096' => 'smo', 'Solyc01g068630.3' => 'sly', 'Solyc05g011880.3' => 'sly', 'Solyc06g076300.3' => 'sly', 'Solyc09g010940.4' => 'sly', 'Solyc09g075890.3' => 'sly', 'Sopen01g030560' => 'spe', 'Sopen05g006630' => 'spe', 'Sopen06g032720' => 'spe', 'Sopen09g005660' => 'spe', 'Sopen09g030690' => 'spe', 'Sp4g14540' => 'spa', 'Sp4g20030' => 'spa', 'Sp5g01320' => 'spa', 'Sp6g21170' => 'spa', 'Sp6g21180' => 'spa', 'Sp6g21190' => 'spa', 'Sp6g40220' => 'spa', 'TAR362G0122' => 'tar', 'TAR362G1338' => 'tar', 'TAR369G0590' => 'tar', 'TAR371G0824' => 'tar', 'TAR622G1429' => 'tar', 'TAR623G0734' => 'tar', 'TAR625G0441' => 'tar', 'TAR629G0976' => 'tar', 'TAR633G1195' => 'tar', 'TAR636G2660' => 'tar', 'THA.LOC104799440' => 'tha', 'THA.LOC104800966' => 'tha', 'THA.LOC104806559' => 'tha', 'THA.LOC104810765' => 'tha', 'THA.LOC104816266' => 'tha', 'THA.LOC104817419' => 'tha', 'THA.LOC104827021' => 'tha', 'Thecc.01G327400' => 'tca', 'Thecc.04G229200' => 'tca', 'Thecc.05G037400' => 'tca', 'Thecc.09G318600' => 'tca', 'Thecc.09G318700' => 'tca', 'Thhalv10006238m.g' => 'esa', 'Thhalv10014321m.g' => 'esa', 'Thhalv10014335m.g' => 'esa', 'Thhalv10015826m.g' => 'esa', 'Thhalv10017107m.g' => 'esa', 'Thhalv10017180m.g' => 'esa', 'Thhalv10029339m.g' => 'esa', 'TPR.G1699' => 'tpr', 'TPR.G23609' => 'tpr', 'TPR.G3081' => 'tpr', 'TPR.G40397' => 'tpr', 'TPR.G5522' => 'tpr', 'TPR.G5618' => 'tpr', 'TPR.G5626' => 'tpr', 'TWI09G1632' => 'twi', 'TWI23G1230' => 'twi', 'TWI53G1064' => 'twi', 'TWI59G0751' => 'twi', 'TWI74G0947' => 'twi', 'TWI77G0337' => 'twi', 'TWI79G1254' => 'twi', 'unitig_0.g2341' => 'ugi', 'unitig_26.g10006' => 'ugi', 'unitig_26.g10008' => 'ugi', 'unitig_26.g9192' => 'ugi', 'vmacro14547' => 'vma', 'vmacro15333' => 'vma', 'vmacro18743' => 'vma', 'vmacro20166' => 'vma', 'VMungo0331G0523' => 'vmu', 'VMungo0331G1202' => 'vmu', 'VMungo0720G1228' => 'vmu', 'VMungo0720G1514' => 'vmu', 'VMungo1080G0169' => 'vmu', 'VMungo1127G1475' => 'vmu', 'VMungo1383G1208' => 'vmu', 'VMungo1383G1698' => 'vmu', 'Zm00001eb012270' => 'zma', 'Zm00001eb054100' => 'zma', 'Zm00001eb063350' => 'zma', 'Zm00001eb328560' => 'zma', 'Zm00001eb342820' => 'zma', 'Zm00001eb362210' => 'zma', 'Zm00001eb397730' => 'zma', 'Zm00001eb399750' => 'zma' ), 'gf_id' => 'HOM05D000959', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000959' ), 'data_identifier' => 'HOM05D000959', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000959', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '622', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p07100' => 'bna', 'A03p11720' => 'bna', 'A05p08300' => 'bna', 'A05p13380' => 'bna', 'A09p54130' => 'bna', 'A10p16690' => 'bna', 'A10p16700' => 'bna', 'A10p33390' => 'bna', 'Aa31LG10G16020' => 'aar', 'Aa31LG1G11810' => 'aar', 'Aa31LG1G11830' => 'aar', 'Aa31LG1G22510' => 'aar', 'Aa31LG5G4890' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5793' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2310' => 'aag', 'Actinidia08499' => 'ach', 'Actinidia11262' => 'ach', 'Actinidia23926' => 'ach', 'Actinidia34420' => 'ach', 'Actinidia36970' => 'ach', 'Ah.02g111220' => 'amhyb', 'Ah.15g097750' => 'amhyb', 'AL4G27500' => 'aly', 'AL6G11470' => 'aly', 'AL8G35950' => 'aly', 'AL8G35960' => 'aly', 'AL8G35970' => 'aly', 'Aqoxy1G00912' => 'aox', 'Aqoxy2G02253' => 'aox', 'Aqoxy2G02411' => 'aox', 'Aqoxy5G00485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BZ66YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K8ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM4FUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6BF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HFV7XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25JBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0YNNV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MAKK6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P70IT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP2Z6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V61LZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YWP64R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3S9AI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7PGHH' => 'arhy', 'AT2G32150' => 'ath', 'AT3G62040' => 'ath', 'AT5G02230' => 'ath', 'AT5G59480' => 'ath', 'AT5G59490' => 'ath', 'ATR0332G060' => 'atr', 'ATR0559G190' => 'atr', 'ATR0693G294' => 'atr', 'Atru.chr3.3975' => 'acertr', 'Atru.chr3.3976' => 'acertr', 'Atru.chr3.3977' => 'acertr', 'Atru.chr4.2498' => 'acertr', 'Atru.chr5.838' => 'acertr', 'Atru.chr8.1990' => 'acertr', 'Atru.chr8.1991' => 'acertr', 'Atru.chr8.1992' => 'acertr', 'AUR62001759' => 'cqu', 'AUR62009545' => 'cqu', 'AUR62010474' => 'cqu', 'AUR62025820' => 'cqu', 'AUR62030422' => 'cqu', 'AUR62033605' => 'cqu', 'AUR62038615' => 'cqu', 'AUR62041347' => 'cqu', 'BcaB01g04574' => 'bca', 'BcaB02g09263' => 'bca', 'BcaB02g10453' => 'bca', 'BcaB05g22513' => 'bca', 'BcaB08g36253' => 'bca', 'BcaB08g36254' => 'bca', 'BcaC01g06519' => 'bca', 'BcaC02g11889' => 'bca', 'BcaC03g14010' => 'bca', 'BcaC03g18439' => 'bca', 'BcaC04g19765' => 'bca', 'BcaC09g48432' => 'bca', 'BcaNung07302' => 'bca', 'BolC2t06040H' => 'bol', 'BolC2t07346H' => 'bol', 'BolC3t13817H' => 'bol', 'BolC4t22625H' => 'bol', 'BolC4t23297H' => 'bol', 'BolC8t51278H' => 'bol', 'BolC9t58050H' => 'bol', 'BolC9t58051H' => 'bol', 'BolC9t60163H' => 'bol', 'BraA02t04712Z' => 'bra', 'BraA02t05791Z' => 'bra', 'BraA03t10483Z' => 'bra', 'BraA05t19795Z' => 'bra', 'BraA05t20276Z' => 'bra', 'BraA09t40827Z' => 'bra', 'BraA10t43750Z' => 'bra', 'BraA10t43751Z' => 'bra', 'BraA10t45370Z' => 'bra', 'C02p00400' => 'bna', 'C02p12460' => 'bna', 'C03p13680' => 'bna', 'C04p10270' => 'bna', 'C04p17500' => 'bna', 'C08p37010' => 'bna', 'C09p51880' => 'bna', 'C09p51890' => 'bna', 'C09p74300' => 'bna', 'CAN.G179.26' => 'can', 'CAN.G3384.1' => 'can', 'CAN.G394.68' => 'can', 'CAN.G907.13' => 'can', 'CANSAT11G0012' => 'cansat', 'CANSAT25G1586' => 'cansat', 'CANSAT35G0735' => 'cansat', 'CANSAT54G0556' => 'cansat', 'CANSAT64G0356' => 'cansat', 'CANSAT78G2042' => 'cansat', 'CARHR125920' => 'chi', 'CARHR131910' => 'chi', 'CARHR172390' => 'chi', 'CARHR211140' => 'chi', 'CARHR285850' => 'chi', 'CARHR285860' => 'chi', 'Carub.0004s1347' => 'cru', 'Carub.0004s1960' => 'cru', 'Carub.0005s2880' => 'cru', 'Carub.0006s0107' => 'cru', 'Carub.0008s2015' => 'cru', 'Carub.0008s2016' => 'cru', 'Carub.0008s2017' => 'cru', 'Ca_01315_v3' => 'car', 'Ca_05063_v3' => 'car', 'Ca_10231_v3' => 'car', 'Ca_10913_v3' => 'car', 'Ca_19156_v3' => 'car', 'Ca_23644_v3' => 'car', 'Ca_26735_v3' => 'car', 'Cc01_g13130' => 'ccan', 'Cc02_g21690' => 'ccan', 'Cc03_g03600' => 'ccan', 'Cc06_g02510' => 'ccan', 'CDE02G1265' => 'cde', 'CDE05G0415' => 'cde', 'CDE08G1082' => 'cde', 'Cfa005780' => 'cfa', 'Cfa011522' => 'cfa', 'Cfa011523' => 'cfa', 'Cfa015627' => 'cfa', 'Cfa017359' => 'cfa', 'Ciclev10005687m.g' => 'ccl', 'Ciclev10012173m.g' => 'ccl', 'Ciclev10021621m.g' => 'ccl', 'Ciclev10028968m.g' => 'ccl', 'Ciclev10029907m.g' => 'ccl', 'CiPaw.01G164800' => 'cil', 'CiPaw.07G083700' => 'cil', 'CiPaw.07G127000' => 'cil', 'CiPaw.07G136900' => 'cil', 'CiPaw.08G081700' => 'cil', 'CiPaw.09G194600' => 'cil', 'CiPaw.10G146500' => 'cil', 'CiPaw.13G091500' => 'cil', 'CiPaw.13G091600' => 'cil', 'ClCG00G003390' => 'cla', 'ClCG01G007220' => 'cla', 'ClCG03G001370' => 'cla', 'ClCG04G008100' => 'cla', 'ClCG06G006110' => 'cla', 'ClCG06G006130' => 'cla', 'ClCG10G021210' => 'cla', 'COL.COLO4_07648' => 'col', 'COL.COLO4_07650' => 'col', 'COL.COLO4_07651' => 'col', 'COL.COLO4_14780' => 'col', 'COL.COLO4_18546' => 'col', 'COL.COLO4_18547' => 'col', 'COL.COLO4_23103' => 'col', 'COL.COLO4_30419' => 'col', 'COL.COLO4_34232' => 'col', 'Cpa.g.sc169.20' => 'cpa', 'Cpa.g.sc57.45' => 'cpa', 'Cpa.g.sc58.124' => 'cpa', 'Cpa.g.sc58.125' => 'cpa', 'Cpa.g.sc81.118' => 'cpa', 'Cpa.g.sc81.119' => 'cpa', 'Cre12.g524700' => 'cre', 'CsaV3_1G034430' => 'csa', 'CsaV3_1G034440' => 'csa', 'CsaV3_1G034450' => 'csa', 'CsaV3_3G034830' => 'csa', 'CsaV3_4G025090' => 'csa', 'CsaV3_5G018660' => 'csa', 'CsaV3_6G038160' => 'csa', 'CSS0003447' => 'camsi', 'CSS0017840' => 'camsi', 'CSS0019260' => 'camsi', 'CSS0040375' => 'camsi', 'CSS0042533' => 'camsi', 'DCAR_005960' => 'dca', 'DCAR_012104' => 'dca', 'DCAR_012105' => 'dca', 'DCAR_012293' => 'dca', 'DCAR_015632' => 'dca', 'DCAR_024602' => 'dca', 'DCAR_028752' => 'dca', 'Dinv06261' => 'din', 'Dinv13982' => 'din', 'Dinv17029' => 'din', 'Dinv18463' => 'din', 'Dinv33181' => 'din', 'Dinv35585' => 'din', 'Dinv37161' => 'din', 'Dinv42977' => 'din', 'Dinv43122' => 'din', 'Dinv44517' => 'din', 'Duzib093G0256' => 'dzi', 'Duzib106G1254' => 'dzi', 'Duzib128G1789' => 'dzi', 'Duzib133G0633' => 'dzi', 'Duzib138G0510' => 'dzi', 'Duzib150G1084' => 'dzi', 'Duzib168G0488' => 'dzi', 'Duzib168G1523' => 'dzi', 'Duzib170G0133' => 'dzi', 'ECA234G1433' => 'eca', 'ECA236G1432' => 'eca', 'ECA236G2256' => 'eca', 'ECA236G2365' => 'eca', 'ECA236G4830' => 'eca', 'ECA248G1505' => 'eca', 'EL10Ac3g06431' => 'bvu', 'EL10Ac5g12577' => 'bvu', 'EL10Ac6g13533' => 'bvu', 'EL10Ac7g16045' => 'bvu', 'Eucgr.A01281' => 'egr', 'Eucgr.B02326' => 'egr', 'Eucgr.H03532' => 'egr', 'Eucgr.K00553' => 'egr', 'Eucgr.K03116' => 'egr', 'FAN02G3963' => 'fan', 'FAN05G0438' => 'fan', 'FAN09G2434' => 'fan', 'FAN12G3984' => 'fan', 'FAN14G0798' => 'fan', 'FAN17G0652' => 'fan', 'FAN19G1988' => 'fan', 'FAN22G0632' => 'fan', 'FAN23G0387' => 'fan', 'FAN26G1323' => 'fan', 'FAN28G0666' => 'fan', 'FvH4_1g26080' => 'fve', 'FvH4_3g36780' => 'fve', 'FvH4_4g15270' => 'fve', 'FvH4_6g13490' => 'fve', 'Glyma.01G098700' => 'gma', 'Glyma.03G065900' => 'gma', 'Glyma.03G073754' => 'gma', 'Glyma.03G073758' => 'gma', 'Glyma.03G083200' => 'gma', 'Glyma.03G225500' => 'gma', 'Glyma.05G037766' => 'gma', 'Glyma.07G133500' => 'gma', 'Glyma.10G139400' => 'gma', 'Glyma.10G248900' => 'gma', 'Glyma.11G137800' => 'gma', 'Glyma.12G061300' => 'gma', 'Glyma.13G337900' => 'gma', 'Glyma.15G036600' => 'gma', 'Glyma.18G182800' => 'gma', 'Glyma.19G222500' => 'gma', 'Glyma.20G144800' => 'gma', 'Gohir.A01G222000' => 'ghi', 'Gohir.A03G044000' => 'ghi', 'Gohir.A03G044100' => 'ghi', 'Gohir.A04G083100' => 'ghi', 'Gohir.A07G127200' => 'ghi', 'Gohir.A07G132400' => 'ghi', 'Gohir.A08G000700' => 'ghi', 'Gohir.A11G327300' => 'ghi', 'Gohir.D01G211500' => 'ghi', 'Gohir.D03G123400' => 'ghi', 'Gohir.D03G123500' => 'ghi', 'Gohir.D04G121800' => 'ghi', 'Gohir.D07G131500' => 'ghi', 'Gohir.D07G136600' => 'ghi', 'Gohir.D08G011600' => 'ghi', 'Gohir.D11G346200' => 'ghi', 'Gorai.001G142800' => 'gra', 'Gorai.001G148700' => 'gra', 'Gorai.002G257300' => 'gra', 'Gorai.003G130000' => 'gra', 'Gorai.003G130100' => 'gra', 'Gorai.004G005300' => 'gra', 'Gorai.007G376500' => 'gra', 'Gorai.012G104700' => 'gra', 'GSVIVG01017946001' => 'vvi', 'GSVIVG01024928001' => 'vvi', 'GSVIVG01028227001' => 'vvi', 'GSVIVG01034151001' => 'vvi', 'HanXRQChr05g0135031' => 'han', 'HanXRQChr05g0135041' => 'han', 'HanXRQChr05g0140021' => 'han', 'HanXRQChr06g0178981' => 'han', 'HanXRQChr07g0188251' => 'han', 'HanXRQChr08g0235311' => 'han', 'HanXRQChr09g0271011' => 'han', 'HanXRQChr10g0293321' => 'han', 'HanXRQChr13g0388171' => 'han', 'Haze_00916' => 'cav', 'Haze_05063' => 'cav', 'Haze_20814' => 'cav', 'Haze_24128' => 'cav', 'Hma1.2p1_0745F.1_g212010' => 'hma', 'Hma1.2p1_0757F.1_g213260' => 'hma', 'Hma1.2p1_0936F.1_g238840' => 'hma', 'Hma1.2p1_1735F.1_g299890' => 'hma', 'Hma1.2p1_1861F.1_g305685' => 'hma', 'HPP92_003397' => 'vpl', 'HPP92_012597' => 'vpl', 'HPP92_015520' => 'vpl', 'HPP92_015539' => 'vpl', 'HPP92_020373' => 'vpl', 'Hund04938' => 'sun', 'Hund10677' => 'sun', 'Hund11033' => 'sun', 'Hund12155' => 'sun', 'Lalb_Chr01g0022551' => 'lal', 'Lalb_Chr03g0042341' => 'lal', 'Lalb_Chr07g0192931' => 'lal', 'Lalb_Chr12g0209551' => 'lal', 'Lalb_Chr19g0125251' => 'lal', 'Lalb_Chr19g0137891' => 'lal', 'Lalb_Chr21g0304641' => 'lal', 'Lalb_Chr21g0309881' => 'lal', 'Lj1A5T12' => 'lonja', 'Lj1C148G10' => 'lonja', 'Lj2A93T83' => 'lonja', 'Lj3A738G68' => 'lonja', 'Lj3C966T1' => 'lonja', 'Lj3g0018958' => 'lja', 'Lj3g0021831' => 'lja', 'Lj3g0025443' => 'lja', 'Lj4g0026809' => 'lja', 'Lj5g0012558' => 'lja', 'Lj5g0021586' => 'lja', 'Lsat_1_v5_gn_5_156840' => 'lsa', 'Lsat_1_v5_gn_8_73460' => 'lsa', 'Lsat_1_v5_gn_8_73481' => 'lsa', 'Lsat_1_v5_gn_9_31601' => 'lsa', 'Lsat_1_v5_gn_9_77320' => 'lsa', 'Manes.01G171300' => 'mes', 'Manes.01G171400' => 'mes', 'Manes.01G236100' => 'mes', 'Manes.02G130500' => 'mes', 'Manes.02G130600' => 'mes', 'Manes.03G180200' => 'mes', 'Manes.05G007000' => 'mes', 'Manes.08G084400' => 'mes', 'Manes.09G092600' => 'mes', 'Manes.15G027900' => 'mes', 'MBI04_g40948_MAGBIO' => 'mbi', 'MBI14_g12123_MAGBIO' => 'mbi', 'MBI18_g28915_MAGBIO' => 'mbi', 'MCO09G053' => 'mco', 'MCO11G782' => 'mco', 'MCO15G215' => 'mco', 'MD03G1088500' => 'mdo', 'MD03G1088600' => 'mdo', 'MD04G1130800' => 'mdo', 'MD09G1291700' => 'mdo', 'MD11G1097500' => 'mdo', 'MD11G1097600' => 'mdo', 'MD12G1143900' => 'mdo', 'MD13G1191400' => 'mdo', 'MD16G1191500' => 'mdo', 'Medtr1g085570' => 'mtr', 'Medtr1g104610' => 'mtr', 'Medtr2g097520' => 'mtr', 'Medtr4g021800' => 'mtr', 'Medtr4g021825' => 'mtr', 'Medtr4g064270' => 'mtr', 'Medtr4g064380' => 'mtr', 'Medtr7g062150' => 'mtr', 'MELO3C003138.2' => 'cme', 'MELO3C005187.2' => 'cme', 'MELO3C009252.2' => 'cme', 'MELO3C014481.2' => 'cme', 'MELO3C020616.2' => 'cme', 'MELO3C020617.2' => 'cme', 'MELO3C020618.2' => 'cme', 'Migut.G00328' => 'egut', 'Migut.J00320' => 'egut', 'Migut.L01000' => 'egut', 'Migut.L01953' => 'egut', 'MSTRG.10253' => 'ama', 'MSTRG.19077' => 'ama', 'MSTRG.26780' => 'ama', 'MSTRG.4023' => 'ama', 'MSTRG.5655' => 'ama', 'MSTRG.9992' => 'ama', 'Nitab4.5_0000043g0310' => 'nta', 'Nitab4.5_0000463g0080' => 'nta', 'Nitab4.5_0000705g0170' => 'nta', 'Nitab4.5_0001326g0060' => 'nta', 'Nitab4.5_0001628g0030' => 'nta', 'Nitab4.5_0002103g0110' => 'nta', 'Nitab4.5_0002946g0030' => 'nta', 'Nitab4.5_0004639g0030' => 'nta', 'Nn2g11149' => 'nnu', 'Nn2g13389' => 'nnu', 'Nn4g25326' => 'nnu', 'Nn4g26290' => 'nnu', 'Nn5g29865' => 'nnu', 'Oeu004163.1' => 'oeu', 'Oeu006901.1' => 'oeu', 'Oeu010096.1' => 'oeu', 'Oeu024340.1' => 'oeu', 'Oeu048369.1' => 'oeu', 'Os01g0973000' => 'osa', 'Os03g0273800' => 'osa', 'Os03g0701200' => 'osa', 'Os03g0834050' => 'osa', 'Os07g0634400' => 'osa', 'Peaxi162Scf00092g01414' => 'pax', 'Peaxi162Scf00165g00818' => 'pax', 'Peaxi162Scf00309g00516' => 'pax', 'Peaxi162Scf00774g00218' => 'pax', 'PGR004G1824' => 'pgr', 'PGR004G2606' => 'pgr', 'PGR031G2716' => 'pgr', 'PGR102G2460' => 'pgr', 'PGR142G2599' => 'pgr', 'PGSC0003DMG400000843' => 'stu', 'PGSC0003DMG400008829' => 'stu', 'PGSC0003DMG400030418' => 'stu', 'PGSC0003DMG400031834' => 'stu', 'PGSC0003DMG401028300' => 'stu', 'PGSC0003DMG402028300' => 'stu', 'Phvul.001G219300' => 'pvu', 'Phvul.007G056000' => 'pvu', 'Phvul.007G208000' => 'pvu', 'Phvul.008G119500' => 'pvu', 'Phvul.010G011200' => 'pvu', 'Phvul.010G014800' => 'pvu', 'Phvul.011G062900' => 'pvu', 'Phvul.L007043' => 'pvu', 'Potri.001G242300' => 'ptr', 'Potri.002G185300' => 'ptr', 'Potri.006G086900' => 'ptr', 'Potri.008G151700' => 'ptr', 'Potri.009G033500' => 'ptr', 'Potri.010G089300' => 'ptr', 'Potri.014G110800' => 'ptr', 'Pp3c27_8130' => 'ppa', 'Pp3c6_27410' => 'ppa', 'PRCOL_00001659' => 'pco', 'PRCOL_00001927' => 'pco', 'PRCOL_00003649' => 'pco', 'Prupe.1G011600' => 'ppe', 'Prupe.3G000800' => 'ppe', 'Prupe.3G001100' => 'ppe', 'Prupe.6G072700' => 'ppe', 'Prupe.6G072800' => 'ppe', 'Prupe.6G257300' => 'ppe', 'Prupe.8G033000' => 'ppe', 'Psat0s2633g0080' => 'psa', 'Psat0s3396g0080' => 'psa', 'Psat0s3396g0200' => 'psa', 'Psat3g139080' => 'psa', 'Psat5g285080' => 'psa', 'Psat6g157760' => 'psa', 'Psat6g208440' => 'psa', 'Psat7g215320' => 'psa', 'Psat7g215400' => 'psa', 'Psat7g235600' => 'psa', 'Psat7g235760' => 'psa', 'PSO063G4603' => 'pso', 'PSO210G0182' => 'pso', 'PSO210G0196' => 'pso', 'PSO339G0394' => 'pso', 'PSO339G4127' => 'pso', 'PSO513G0064' => 'pso', 'PSO761G0079' => 'pso', 'QL01p031003' => 'qlo', 'QL01p031078' => 'qlo', 'QL06p003004' => 'qlo', 'QL07p048731' => 'qlo', 'QL09p037427' => 'qlo', 'RcHm_v2.0_Chr3g0466361' => 'rch', 'RcHm_v2.0_Chr3g0485571' => 'rch', 'RcHm_v2.0_Chr4g0416551' => 'rch', 'RcHm_v2.0_Chr5g0065831' => 'rch', 'Rhsim01G0230500' => 'rsi', 'Rhsim05G0194000' => 'rsi', 'Rhsim08G0250400' => 'rsi', 'Sabra02G0131000' => 'sbr', 'Sabra06G0066300' => 'sbr', 'Sabra08G0115500' => 'sbr', 'Sabra09G0023900' => 'sbr', 'Sabra10G0054000' => 'sbr', 'Sabra14G0081500' => 'sbr', 'Sabra16G0147100' => 'sbr', 'SalBow2G2957' => 'sbo', 'SalBow4G3320' => 'sbo', 'SalBow8G1894' => 'sbo', 'Sc07g0007950' => 'sci', 'Sc12g0001360' => 'sci', 'Sc13g0004330' => 'sci', 'Sc20g0005010' => 'sci', 'Sed0000361' => 'sed', 'Sed0001706' => 'sed', 'Sed0002422' => 'sed', 'Sed0004029' => 'sed', 'Sed0004602' => 'sed', 'Sed0004943' => 'sed', 'Sed0008646' => 'sed', 'Sed0023313' => 'sed', 'Sed0024843' => 'sed', 'SEGI_00081' => 'sgi', 'SEGI_00947' => 'sgi', 'SEGI_04046' => 'sgi', 'SEGI_06880' => 'sgi', 'SEGI_09736' => 'sgi', 'SEGI_12741' => 'sgi', 'SEGI_14530' => 'sgi', 'SEGI_20705' => 'sgi', 'SEGI_26088' => 'sgi', 'SEGI_28323' => 'sgi', 'SEGI_33343' => 'sgi', 'SGA_v2.0_scaffold126G33775' => 'sas', 'SGA_v2.0_scaffold2G01337' => 'sas', 'SGA_v2.0_scaffold38G15006' => 'sas', 'SGA_v2.0_scaffold39G15264' => 'sas', 'SGA_v2.0_scaffold453G51880' => 'sas', 'SHI12696' => 'shi', 'SMO367G1096' => 'smo', 'Solyc01g068630.3' => 'sly', 'Solyc05g011880.3' => 'sly', 'Solyc06g076300.3' => 'sly', 'Solyc09g010940.4' => 'sly', 'Solyc09g075890.3' => 'sly', 'Sopen01g030560' => 'spe', 'Sopen05g006630' => 'spe', 'Sopen06g032720' => 'spe', 'Sopen09g005660' => 'spe', 'Sopen09g030690' => 'spe', 'Sp4g14540' => 'spa', 'Sp4g20030' => 'spa', 'Sp5g01320' => 'spa', 'Sp6g21170' => 'spa', 'Sp6g21180' => 'spa', 'Sp6g21190' => 'spa', 'Sp6g40220' => 'spa', 'TAR362G0122' => 'tar', 'TAR362G1338' => 'tar', 'TAR369G0590' => 'tar', 'TAR371G0824' => 'tar', 'TAR622G1429' => 'tar', 'TAR623G0734' => 'tar', 'TAR625G0441' => 'tar', 'TAR629G0976' => 'tar', 'TAR633G1195' => 'tar', 'TAR636G2660' => 'tar', 'THA.LOC104799440' => 'tha', 'THA.LOC104800966' => 'tha', 'THA.LOC104806559' => 'tha', 'THA.LOC104810765' => 'tha', 'THA.LOC104816266' => 'tha', 'THA.LOC104817419' => 'tha', 'THA.LOC104827021' => 'tha', 'Thecc.01G327400' => 'tca', 'Thecc.04G229200' => 'tca', 'Thecc.05G037400' => 'tca', 'Thecc.09G318600' => 'tca', 'Thecc.09G318700' => 'tca', 'Thhalv10006238m.g' => 'esa', 'Thhalv10014321m.g' => 'esa', 'Thhalv10014335m.g' => 'esa', 'Thhalv10015826m.g' => 'esa', 'Thhalv10017107m.g' => 'esa', 'Thhalv10017180m.g' => 'esa', 'Thhalv10029339m.g' => 'esa', 'TPR.G1699' => 'tpr', 'TPR.G23609' => 'tpr', 'TPR.G3081' => 'tpr', 'TPR.G40397' => 'tpr', 'TPR.G5522' => 'tpr', 'TPR.G5618' => 'tpr', 'TPR.G5626' => 'tpr', 'TWI09G1632' => 'twi', 'TWI23G1230' => 'twi', 'TWI53G1064' => 'twi', 'TWI59G0751' => 'twi', 'TWI74G0947' => 'twi', 'TWI77G0337' => 'twi', 'TWI79G1254' => 'twi', 'unitig_0.g2341' => 'ugi', 'unitig_26.g10006' => 'ugi', 'unitig_26.g10008' => 'ugi', 'unitig_26.g9192' => 'ugi', 'vmacro14547' => 'vma', 'vmacro15333' => 'vma', 'vmacro18743' => 'vma', 'vmacro20166' => 'vma', 'VMungo0331G0523' => 'vmu', 'VMungo0331G1202' => 'vmu', 'VMungo0720G1228' => 'vmu', 'VMungo0720G1514' => 'vmu', 'VMungo1080G0169' => 'vmu', 'VMungo1127G1475' => 'vmu', 'VMungo1383G1208' => 'vmu', 'VMungo1383G1698' => 'vmu', 'Zm00001eb012270' => 'zma', 'Zm00001eb054100' => 'zma', 'Zm00001eb063350' => 'zma', 'Zm00001eb328560' => 'zma', 'Zm00001eb342820' => 'zma', 'Zm00001eb362210' => 'zma', 'Zm00001eb397730' => 'zma', 'Zm00001eb399750' => 'zma' ) $gf_id = 'HOM05D000959' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000959' ) $data_identifier = 'HOM05D000959' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 5, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 5, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 10, 'mbi' => (int) 3, 'mco' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 2, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 3, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 11, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399750' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000959', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '622', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p07100' => 'bna', 'A03p11720' => 'bna', 'A05p08300' => 'bna', 'A05p13380' => 'bna', 'A09p54130' => 'bna', 'A10p16690' => 'bna', 'A10p16700' => 'bna', 'A10p33390' => 'bna', 'Aa31LG10G16020' => 'aar', 'Aa31LG1G11810' => 'aar', 'Aa31LG1G11830' => 'aar', 'Aa31LG1G22510' => 'aar', 'Aa31LG5G4890' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5793' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2310' => 'aag', 'Actinidia08499' => 'ach', 'Actinidia11262' => 'ach', 'Actinidia23926' => 'ach', 'Actinidia34420' => 'ach', 'Actinidia36970' => 'ach', 'Ah.02g111220' => 'amhyb', 'Ah.15g097750' => 'amhyb', 'AL4G27500' => 'aly', 'AL6G11470' => 'aly', 'AL8G35950' => 'aly', 'AL8G35960' => 'aly', 'AL8G35970' => 'aly', 'Aqoxy1G00912' => 'aox', 'Aqoxy2G02253' => 'aox', 'Aqoxy2G02411' => 'aox', 'Aqoxy5G00485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BZ66YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K8ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM4FUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6BF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HFV7XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25JBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0YNNV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MAKK6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P70IT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP2Z6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V61LZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YWP64R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3S9AI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7PGHH' => 'arhy', 'AT2G32150' => 'ath', 'AT3G62040' => 'ath', 'AT5G02230' => 'ath', 'AT5G59480' => 'ath', 'AT5G59490' => 'ath', 'ATR0332G060' => 'atr', 'ATR0559G190' => 'atr', 'ATR0693G294' => 'atr', 'Atru.chr3.3975' => 'acertr', 'Atru.chr3.3976' => 'acertr', 'Atru.chr3.3977' => 'acertr', 'Atru.chr4.2498' => 'acertr', 'Atru.chr5.838' => 'acertr', 'Atru.chr8.1990' => 'acertr', 'Atru.chr8.1991' => 'acertr', 'Atru.chr8.1992' => 'acertr', 'AUR62001759' => 'cqu', 'AUR62009545' => 'cqu', 'AUR62010474' => 'cqu', 'AUR62025820' => 'cqu', 'AUR62030422' => 'cqu', 'AUR62033605' => 'cqu', 'AUR62038615' => 'cqu', 'AUR62041347' => 'cqu', 'BcaB01g04574' => 'bca', 'BcaB02g09263' => 'bca', 'BcaB02g10453' => 'bca', 'BcaB05g22513' => 'bca', 'BcaB08g36253' => 'bca', 'BcaB08g36254' => 'bca', 'BcaC01g06519' => 'bca', 'BcaC02g11889' => 'bca', 'BcaC03g14010' => 'bca', 'BcaC03g18439' => 'bca', 'BcaC04g19765' => 'bca', 'BcaC09g48432' => 'bca', 'BcaNung07302' => 'bca', 'BolC2t06040H' => 'bol', 'BolC2t07346H' => 'bol', 'BolC3t13817H' => 'bol', 'BolC4t22625H' => 'bol', 'BolC4t23297H' => 'bol', 'BolC8t51278H' => 'bol', 'BolC9t58050H' => 'bol', 'BolC9t58051H' => 'bol', 'BolC9t60163H' => 'bol', 'BraA02t04712Z' => 'bra', 'BraA02t05791Z' => 'bra', 'BraA03t10483Z' => 'bra', 'BraA05t19795Z' => 'bra', 'BraA05t20276Z' => 'bra', 'BraA09t40827Z' => 'bra', 'BraA10t43750Z' => 'bra', 'BraA10t43751Z' => 'bra', 'BraA10t45370Z' => 'bra', 'C02p00400' => 'bna', 'C02p12460' => 'bna', 'C03p13680' => 'bna', 'C04p10270' => 'bna', 'C04p17500' => 'bna', 'C08p37010' => 'bna', 'C09p51880' => 'bna', 'C09p51890' => 'bna', 'C09p74300' => 'bna', 'CAN.G179.26' => 'can', 'CAN.G3384.1' => 'can', 'CAN.G394.68' => 'can', 'CAN.G907.13' => 'can', 'CANSAT11G0012' => 'cansat', 'CANSAT25G1586' => 'cansat', 'CANSAT35G0735' => 'cansat', 'CANSAT54G0556' => 'cansat', 'CANSAT64G0356' => 'cansat', 'CANSAT78G2042' => 'cansat', 'CARHR125920' => 'chi', 'CARHR131910' => 'chi', 'CARHR172390' => 'chi', 'CARHR211140' => 'chi', 'CARHR285850' => 'chi', 'CARHR285860' => 'chi', 'Carub.0004s1347' => 'cru', 'Carub.0004s1960' => 'cru', 'Carub.0005s2880' => 'cru', 'Carub.0006s0107' => 'cru', 'Carub.0008s2015' => 'cru', 'Carub.0008s2016' => 'cru', 'Carub.0008s2017' => 'cru', 'Ca_01315_v3' => 'car', 'Ca_05063_v3' => 'car', 'Ca_10231_v3' => 'car', 'Ca_10913_v3' => 'car', 'Ca_19156_v3' => 'car', 'Ca_23644_v3' => 'car', 'Ca_26735_v3' => 'car', 'Cc01_g13130' => 'ccan', 'Cc02_g21690' => 'ccan', 'Cc03_g03600' => 'ccan', 'Cc06_g02510' => 'ccan', 'CDE02G1265' => 'cde', 'CDE05G0415' => 'cde', 'CDE08G1082' => 'cde', 'Cfa005780' => 'cfa', 'Cfa011522' => 'cfa', 'Cfa011523' => 'cfa', 'Cfa015627' => 'cfa', 'Cfa017359' => 'cfa', 'Ciclev10005687m.g' => 'ccl', 'Ciclev10012173m.g' => 'ccl', 'Ciclev10021621m.g' => 'ccl', 'Ciclev10028968m.g' => 'ccl', 'Ciclev10029907m.g' => 'ccl', 'CiPaw.01G164800' => 'cil', 'CiPaw.07G083700' => 'cil', 'CiPaw.07G127000' => 'cil', 'CiPaw.07G136900' => 'cil', 'CiPaw.08G081700' => 'cil', 'CiPaw.09G194600' => 'cil', 'CiPaw.10G146500' => 'cil', 'CiPaw.13G091500' => 'cil', 'CiPaw.13G091600' => 'cil', 'ClCG00G003390' => 'cla', 'ClCG01G007220' => 'cla', 'ClCG03G001370' => 'cla', 'ClCG04G008100' => 'cla', 'ClCG06G006110' => 'cla', 'ClCG06G006130' => 'cla', 'ClCG10G021210' => 'cla', 'COL.COLO4_07648' => 'col', 'COL.COLO4_07650' => 'col', 'COL.COLO4_07651' => 'col', 'COL.COLO4_14780' => 'col', 'COL.COLO4_18546' => 'col', 'COL.COLO4_18547' => 'col', 'COL.COLO4_23103' => 'col', 'COL.COLO4_30419' => 'col', 'COL.COLO4_34232' => 'col', 'Cpa.g.sc169.20' => 'cpa', 'Cpa.g.sc57.45' => 'cpa', 'Cpa.g.sc58.124' => 'cpa', 'Cpa.g.sc58.125' => 'cpa', 'Cpa.g.sc81.118' => 'cpa', 'Cpa.g.sc81.119' => 'cpa', 'Cre12.g524700' => 'cre', 'CsaV3_1G034430' => 'csa', 'CsaV3_1G034440' => 'csa', 'CsaV3_1G034450' => 'csa', 'CsaV3_3G034830' => 'csa', 'CsaV3_4G025090' => 'csa', 'CsaV3_5G018660' => 'csa', 'CsaV3_6G038160' => 'csa', 'CSS0003447' => 'camsi', 'CSS0017840' => 'camsi', 'CSS0019260' => 'camsi', 'CSS0040375' => 'camsi', 'CSS0042533' => 'camsi', 'DCAR_005960' => 'dca', 'DCAR_012104' => 'dca', 'DCAR_012105' => 'dca', 'DCAR_012293' => 'dca', 'DCAR_015632' => 'dca', 'DCAR_024602' => 'dca', 'DCAR_028752' => 'dca', 'Dinv06261' => 'din', 'Dinv13982' => 'din', 'Dinv17029' => 'din', 'Dinv18463' => 'din', 'Dinv33181' => 'din', 'Dinv35585' => 'din', 'Dinv37161' => 'din', 'Dinv42977' => 'din', 'Dinv43122' => 'din', 'Dinv44517' => 'din', 'Duzib093G0256' => 'dzi', 'Duzib106G1254' => 'dzi', 'Duzib128G1789' => 'dzi', 'Duzib133G0633' => 'dzi', 'Duzib138G0510' => 'dzi', 'Duzib150G1084' => 'dzi', 'Duzib168G0488' => 'dzi', 'Duzib168G1523' => 'dzi', 'Duzib170G0133' => 'dzi', 'ECA234G1433' => 'eca', 'ECA236G1432' => 'eca', 'ECA236G2256' => 'eca', 'ECA236G2365' => 'eca', 'ECA236G4830' => 'eca', 'ECA248G1505' => 'eca', 'EL10Ac3g06431' => 'bvu', 'EL10Ac5g12577' => 'bvu', 'EL10Ac6g13533' => 'bvu', 'EL10Ac7g16045' => 'bvu', 'Eucgr.A01281' => 'egr', 'Eucgr.B02326' => 'egr', 'Eucgr.H03532' => 'egr', 'Eucgr.K00553' => 'egr', 'Eucgr.K03116' => 'egr', 'FAN02G3963' => 'fan', 'FAN05G0438' => 'fan', 'FAN09G2434' => 'fan', 'FAN12G3984' => 'fan', 'FAN14G0798' => 'fan', 'FAN17G0652' => 'fan', 'FAN19G1988' => 'fan', 'FAN22G0632' => 'fan', 'FAN23G0387' => 'fan', 'FAN26G1323' => 'fan', 'FAN28G0666' => 'fan', 'FvH4_1g26080' => 'fve', 'FvH4_3g36780' => 'fve', 'FvH4_4g15270' => 'fve', 'FvH4_6g13490' => 'fve', 'Glyma.01G098700' => 'gma', 'Glyma.03G065900' => 'gma', 'Glyma.03G073754' => 'gma', 'Glyma.03G073758' => 'gma', 'Glyma.03G083200' => 'gma', 'Glyma.03G225500' => 'gma', 'Glyma.05G037766' => 'gma', 'Glyma.07G133500' => 'gma', 'Glyma.10G139400' => 'gma', 'Glyma.10G248900' => 'gma', 'Glyma.11G137800' => 'gma', 'Glyma.12G061300' => 'gma', 'Glyma.13G337900' => 'gma', 'Glyma.15G036600' => 'gma', 'Glyma.18G182800' => 'gma', 'Glyma.19G222500' => 'gma', 'Glyma.20G144800' => 'gma', 'Gohir.A01G222000' => 'ghi', 'Gohir.A03G044000' => 'ghi', 'Gohir.A03G044100' => 'ghi', 'Gohir.A04G083100' => 'ghi', 'Gohir.A07G127200' => 'ghi', 'Gohir.A07G132400' => 'ghi', 'Gohir.A08G000700' => 'ghi', 'Gohir.A11G327300' => 'ghi', 'Gohir.D01G211500' => 'ghi', 'Gohir.D03G123400' => 'ghi', 'Gohir.D03G123500' => 'ghi', 'Gohir.D04G121800' => 'ghi', 'Gohir.D07G131500' => 'ghi', 'Gohir.D07G136600' => 'ghi', 'Gohir.D08G011600' => 'ghi', 'Gohir.D11G346200' => 'ghi', 'Gorai.001G142800' => 'gra', 'Gorai.001G148700' => 'gra', 'Gorai.002G257300' => 'gra', 'Gorai.003G130000' => 'gra', 'Gorai.003G130100' => 'gra', 'Gorai.004G005300' => 'gra', 'Gorai.007G376500' => 'gra', 'Gorai.012G104700' => 'gra', 'GSVIVG01017946001' => 'vvi', 'GSVIVG01024928001' => 'vvi', 'GSVIVG01028227001' => 'vvi', 'GSVIVG01034151001' => 'vvi', 'HanXRQChr05g0135031' => 'han', 'HanXRQChr05g0135041' => 'han', 'HanXRQChr05g0140021' => 'han', 'HanXRQChr06g0178981' => 'han', 'HanXRQChr07g0188251' => 'han', 'HanXRQChr08g0235311' => 'han', 'HanXRQChr09g0271011' => 'han', 'HanXRQChr10g0293321' => 'han', 'HanXRQChr13g0388171' => 'han', 'Haze_00916' => 'cav', 'Haze_05063' => 'cav', 'Haze_20814' => 'cav', 'Haze_24128' => 'cav', 'Hma1.2p1_0745F.1_g212010' => 'hma', 'Hma1.2p1_0757F.1_g213260' => 'hma', 'Hma1.2p1_0936F.1_g238840' => 'hma', 'Hma1.2p1_1735F.1_g299890' => 'hma', 'Hma1.2p1_1861F.1_g305685' => 'hma', 'HPP92_003397' => 'vpl', 'HPP92_012597' => 'vpl', 'HPP92_015520' => 'vpl', 'HPP92_015539' => 'vpl', 'HPP92_020373' => 'vpl', 'Hund04938' => 'sun', 'Hund10677' => 'sun', 'Hund11033' => 'sun', 'Hund12155' => 'sun', 'Lalb_Chr01g0022551' => 'lal', 'Lalb_Chr03g0042341' => 'lal', 'Lalb_Chr07g0192931' => 'lal', 'Lalb_Chr12g0209551' => 'lal', 'Lalb_Chr19g0125251' => 'lal', 'Lalb_Chr19g0137891' => 'lal', 'Lalb_Chr21g0304641' => 'lal', 'Lalb_Chr21g0309881' => 'lal', 'Lj1A5T12' => 'lonja', 'Lj1C148G10' => 'lonja', 'Lj2A93T83' => 'lonja', 'Lj3A738G68' => 'lonja', 'Lj3C966T1' => 'lonja', 'Lj3g0018958' => 'lja', 'Lj3g0021831' => 'lja', 'Lj3g0025443' => 'lja', 'Lj4g0026809' => 'lja', 'Lj5g0012558' => 'lja', 'Lj5g0021586' => 'lja', 'Lsat_1_v5_gn_5_156840' => 'lsa', 'Lsat_1_v5_gn_8_73460' => 'lsa', 'Lsat_1_v5_gn_8_73481' => 'lsa', 'Lsat_1_v5_gn_9_31601' => 'lsa', 'Lsat_1_v5_gn_9_77320' => 'lsa', 'Manes.01G171300' => 'mes', 'Manes.01G171400' => 'mes', 'Manes.01G236100' => 'mes', 'Manes.02G130500' => 'mes', 'Manes.02G130600' => 'mes', 'Manes.03G180200' => 'mes', 'Manes.05G007000' => 'mes', 'Manes.08G084400' => 'mes', 'Manes.09G092600' => 'mes', 'Manes.15G027900' => 'mes', 'MBI04_g40948_MAGBIO' => 'mbi', 'MBI14_g12123_MAGBIO' => 'mbi', 'MBI18_g28915_MAGBIO' => 'mbi', 'MCO09G053' => 'mco', 'MCO11G782' => 'mco', 'MCO15G215' => 'mco', 'MD03G1088500' => 'mdo', 'MD03G1088600' => 'mdo', 'MD04G1130800' => 'mdo', 'MD09G1291700' => 'mdo', 'MD11G1097500' => 'mdo', 'MD11G1097600' => 'mdo', 'MD12G1143900' => 'mdo', 'MD13G1191400' => 'mdo', 'MD16G1191500' => 'mdo', 'Medtr1g085570' => 'mtr', 'Medtr1g104610' => 'mtr', 'Medtr2g097520' => 'mtr', 'Medtr4g021800' => 'mtr', 'Medtr4g021825' => 'mtr', 'Medtr4g064270' => 'mtr', 'Medtr4g064380' => 'mtr', 'Medtr7g062150' => 'mtr', 'MELO3C003138.2' => 'cme', 'MELO3C005187.2' => 'cme', 'MELO3C009252.2' => 'cme', 'MELO3C014481.2' => 'cme', 'MELO3C020616.2' => 'cme', 'MELO3C020617.2' => 'cme', 'MELO3C020618.2' => 'cme', 'Migut.G00328' => 'egut', 'Migut.J00320' => 'egut', 'Migut.L01000' => 'egut', 'Migut.L01953' => 'egut', 'MSTRG.10253' => 'ama', 'MSTRG.19077' => 'ama', 'MSTRG.26780' => 'ama', 'MSTRG.4023' => 'ama', 'MSTRG.5655' => 'ama', 'MSTRG.9992' => 'ama', 'Nitab4.5_0000043g0310' => 'nta', 'Nitab4.5_0000463g0080' => 'nta', 'Nitab4.5_0000705g0170' => 'nta', 'Nitab4.5_0001326g0060' => 'nta', 'Nitab4.5_0001628g0030' => 'nta', 'Nitab4.5_0002103g0110' => 'nta', 'Nitab4.5_0002946g0030' => 'nta', 'Nitab4.5_0004639g0030' => 'nta', 'Nn2g11149' => 'nnu', 'Nn2g13389' => 'nnu', 'Nn4g25326' => 'nnu', 'Nn4g26290' => 'nnu', 'Nn5g29865' => 'nnu', 'Oeu004163.1' => 'oeu', 'Oeu006901.1' => 'oeu', 'Oeu010096.1' => 'oeu', 'Oeu024340.1' => 'oeu', 'Oeu048369.1' => 'oeu', 'Os01g0973000' => 'osa', 'Os03g0273800' => 'osa', 'Os03g0701200' => 'osa', 'Os03g0834050' => 'osa', 'Os07g0634400' => 'osa', 'Peaxi162Scf00092g01414' => 'pax', 'Peaxi162Scf00165g00818' => 'pax', 'Peaxi162Scf00309g00516' => 'pax', 'Peaxi162Scf00774g00218' => 'pax', 'PGR004G1824' => 'pgr', 'PGR004G2606' => 'pgr', 'PGR031G2716' => 'pgr', 'PGR102G2460' => 'pgr', 'PGR142G2599' => 'pgr', 'PGSC0003DMG400000843' => 'stu', 'PGSC0003DMG400008829' => 'stu', 'PGSC0003DMG400030418' => 'stu', 'PGSC0003DMG400031834' => 'stu', 'PGSC0003DMG401028300' => 'stu', 'PGSC0003DMG402028300' => 'stu', 'Phvul.001G219300' => 'pvu', 'Phvul.007G056000' => 'pvu', 'Phvul.007G208000' => 'pvu', 'Phvul.008G119500' => 'pvu', 'Phvul.010G011200' => 'pvu', 'Phvul.010G014800' => 'pvu', 'Phvul.011G062900' => 'pvu', 'Phvul.L007043' => 'pvu', 'Potri.001G242300' => 'ptr', 'Potri.002G185300' => 'ptr', 'Potri.006G086900' => 'ptr', 'Potri.008G151700' => 'ptr', 'Potri.009G033500' => 'ptr', 'Potri.010G089300' => 'ptr', 'Potri.014G110800' => 'ptr', 'Pp3c27_8130' => 'ppa', 'Pp3c6_27410' => 'ppa', 'PRCOL_00001659' => 'pco', 'PRCOL_00001927' => 'pco', 'PRCOL_00003649' => 'pco', 'Prupe.1G011600' => 'ppe', 'Prupe.3G000800' => 'ppe', 'Prupe.3G001100' => 'ppe', 'Prupe.6G072700' => 'ppe', 'Prupe.6G072800' => 'ppe', 'Prupe.6G257300' => 'ppe', 'Prupe.8G033000' => 'ppe', 'Psat0s2633g0080' => 'psa', 'Psat0s3396g0080' => 'psa', 'Psat0s3396g0200' => 'psa', 'Psat3g139080' => 'psa', 'Psat5g285080' => 'psa', 'Psat6g157760' => 'psa', 'Psat6g208440' => 'psa', 'Psat7g215320' => 'psa', 'Psat7g215400' => 'psa', 'Psat7g235600' => 'psa', 'Psat7g235760' => 'psa', 'PSO063G4603' => 'pso', 'PSO210G0182' => 'pso', 'PSO210G0196' => 'pso', 'PSO339G0394' => 'pso', 'PSO339G4127' => 'pso', 'PSO513G0064' => 'pso', 'PSO761G0079' => 'pso', 'QL01p031003' => 'qlo', 'QL01p031078' => 'qlo', 'QL06p003004' => 'qlo', 'QL07p048731' => 'qlo', 'QL09p037427' => 'qlo', 'RcHm_v2.0_Chr3g0466361' => 'rch', 'RcHm_v2.0_Chr3g0485571' => 'rch', 'RcHm_v2.0_Chr4g0416551' => 'rch', 'RcHm_v2.0_Chr5g0065831' => 'rch', 'Rhsim01G0230500' => 'rsi', 'Rhsim05G0194000' => 'rsi', 'Rhsim08G0250400' => 'rsi', 'Sabra02G0131000' => 'sbr', 'Sabra06G0066300' => 'sbr', 'Sabra08G0115500' => 'sbr', 'Sabra09G0023900' => 'sbr', 'Sabra10G0054000' => 'sbr', 'Sabra14G0081500' => 'sbr', 'Sabra16G0147100' => 'sbr', 'SalBow2G2957' => 'sbo', 'SalBow4G3320' => 'sbo', 'SalBow8G1894' => 'sbo', 'Sc07g0007950' => 'sci', 'Sc12g0001360' => 'sci', 'Sc13g0004330' => 'sci', 'Sc20g0005010' => 'sci', 'Sed0000361' => 'sed', 'Sed0001706' => 'sed', 'Sed0002422' => 'sed', 'Sed0004029' => 'sed', 'Sed0004602' => 'sed', 'Sed0004943' => 'sed', 'Sed0008646' => 'sed', 'Sed0023313' => 'sed', 'Sed0024843' => 'sed', 'SEGI_00081' => 'sgi', 'SEGI_00947' => 'sgi', 'SEGI_04046' => 'sgi', 'SEGI_06880' => 'sgi', 'SEGI_09736' => 'sgi', 'SEGI_12741' => 'sgi', 'SEGI_14530' => 'sgi', 'SEGI_20705' => 'sgi', 'SEGI_26088' => 'sgi', 'SEGI_28323' => 'sgi', 'SEGI_33343' => 'sgi', 'SGA_v2.0_scaffold126G33775' => 'sas', 'SGA_v2.0_scaffold2G01337' => 'sas', 'SGA_v2.0_scaffold38G15006' => 'sas', 'SGA_v2.0_scaffold39G15264' => 'sas', 'SGA_v2.0_scaffold453G51880' => 'sas', 'SHI12696' => 'shi', 'SMO367G1096' => 'smo', 'Solyc01g068630.3' => 'sly', 'Solyc05g011880.3' => 'sly', 'Solyc06g076300.3' => 'sly', 'Solyc09g010940.4' => 'sly', 'Solyc09g075890.3' => 'sly', 'Sopen01g030560' => 'spe', 'Sopen05g006630' => 'spe', 'Sopen06g032720' => 'spe', 'Sopen09g005660' => 'spe', 'Sopen09g030690' => 'spe', 'Sp4g14540' => 'spa', 'Sp4g20030' => 'spa', 'Sp5g01320' => 'spa', 'Sp6g21170' => 'spa', 'Sp6g21180' => 'spa', 'Sp6g21190' => 'spa', 'Sp6g40220' => 'spa', 'TAR362G0122' => 'tar', 'TAR362G1338' => 'tar', 'TAR369G0590' => 'tar', 'TAR371G0824' => 'tar', 'TAR622G1429' => 'tar', 'TAR623G0734' => 'tar', 'TAR625G0441' => 'tar', 'TAR629G0976' => 'tar', 'TAR633G1195' => 'tar', 'TAR636G2660' => 'tar', 'THA.LOC104799440' => 'tha', 'THA.LOC104800966' => 'tha', 'THA.LOC104806559' => 'tha', 'THA.LOC104810765' => 'tha', 'THA.LOC104816266' => 'tha', 'THA.LOC104817419' => 'tha', 'THA.LOC104827021' => 'tha', 'Thecc.01G327400' => 'tca', 'Thecc.04G229200' => 'tca', 'Thecc.05G037400' => 'tca', 'Thecc.09G318600' => 'tca', 'Thecc.09G318700' => 'tca', 'Thhalv10006238m.g' => 'esa', 'Thhalv10014321m.g' => 'esa', 'Thhalv10014335m.g' => 'esa', 'Thhalv10015826m.g' => 'esa', 'Thhalv10017107m.g' => 'esa', 'Thhalv10017180m.g' => 'esa', 'Thhalv10029339m.g' => 'esa', 'TPR.G1699' => 'tpr', 'TPR.G23609' => 'tpr', 'TPR.G3081' => 'tpr', 'TPR.G40397' => 'tpr', 'TPR.G5522' => 'tpr', 'TPR.G5618' => 'tpr', 'TPR.G5626' => 'tpr', 'TWI09G1632' => 'twi', 'TWI23G1230' => 'twi', 'TWI53G1064' => 'twi', 'TWI59G0751' => 'twi', 'TWI74G0947' => 'twi', 'TWI77G0337' => 'twi', 'TWI79G1254' => 'twi', 'unitig_0.g2341' => 'ugi', 'unitig_26.g10006' => 'ugi', 'unitig_26.g10008' => 'ugi', 'unitig_26.g9192' => 'ugi', 'vmacro14547' => 'vma', 'vmacro15333' => 'vma', 'vmacro18743' => 'vma', 'vmacro20166' => 'vma', 'VMungo0331G0523' => 'vmu', 'VMungo0331G1202' => 'vmu', 'VMungo0720G1228' => 'vmu', 'VMungo0720G1514' => 'vmu', 'VMungo1080G0169' => 'vmu', 'VMungo1127G1475' => 'vmu', 'VMungo1383G1208' => 'vmu', 'VMungo1383G1698' => 'vmu', 'Zm00001eb012270' => 'zma', 'Zm00001eb054100' => 'zma', 'Zm00001eb063350' => 'zma', 'Zm00001eb328560' => 'zma', 'Zm00001eb342820' => 'zma', 'Zm00001eb362210' => 'zma', 'Zm00001eb397730' => 'zma', 'Zm00001eb399750' => 'zma' ), 'gf_id' => 'HOM05D000959', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000959' ), 'data_identifier' => 'HOM05D000959', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000959', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '622', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p07100' => 'bna', 'A03p11720' => 'bna', 'A05p08300' => 'bna', 'A05p13380' => 'bna', 'A09p54130' => 'bna', 'A10p16690' => 'bna', 'A10p16700' => 'bna', 'A10p33390' => 'bna', 'Aa31LG10G16020' => 'aar', 'Aa31LG1G11810' => 'aar', 'Aa31LG1G11830' => 'aar', 'Aa31LG1G22510' => 'aar', 'Aa31LG5G4890' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5793' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2310' => 'aag', 'Actinidia08499' => 'ach', 'Actinidia11262' => 'ach', 'Actinidia23926' => 'ach', 'Actinidia34420' => 'ach', 'Actinidia36970' => 'ach', 'Ah.02g111220' => 'amhyb', 'Ah.15g097750' => 'amhyb', 'AL4G27500' => 'aly', 'AL6G11470' => 'aly', 'AL8G35950' => 'aly', 'AL8G35960' => 'aly', 'AL8G35970' => 'aly', 'Aqoxy1G00912' => 'aox', 'Aqoxy2G02253' => 'aox', 'Aqoxy2G02411' => 'aox', 'Aqoxy5G00485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BZ66YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K8ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM4FUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6BF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HFV7XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25JBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0YNNV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MAKK6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P70IT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP2Z6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V61LZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YWP64R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3S9AI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7PGHH' => 'arhy', 'AT2G32150' => 'ath', 'AT3G62040' => 'ath', 'AT5G02230' => 'ath', 'AT5G59480' => 'ath', 'AT5G59490' => 'ath', 'ATR0332G060' => 'atr', 'ATR0559G190' => 'atr', 'ATR0693G294' => 'atr', 'Atru.chr3.3975' => 'acertr', 'Atru.chr3.3976' => 'acertr', 'Atru.chr3.3977' => 'acertr', 'Atru.chr4.2498' => 'acertr', 'Atru.chr5.838' => 'acertr', 'Atru.chr8.1990' => 'acertr', 'Atru.chr8.1991' => 'acertr', 'Atru.chr8.1992' => 'acertr', 'AUR62001759' => 'cqu', 'AUR62009545' => 'cqu', 'AUR62010474' => 'cqu', 'AUR62025820' => 'cqu', 'AUR62030422' => 'cqu', 'AUR62033605' => 'cqu', 'AUR62038615' => 'cqu', 'AUR62041347' => 'cqu', 'BcaB01g04574' => 'bca', 'BcaB02g09263' => 'bca', 'BcaB02g10453' => 'bca', 'BcaB05g22513' => 'bca', 'BcaB08g36253' => 'bca', 'BcaB08g36254' => 'bca', 'BcaC01g06519' => 'bca', 'BcaC02g11889' => 'bca', 'BcaC03g14010' => 'bca', 'BcaC03g18439' => 'bca', 'BcaC04g19765' => 'bca', 'BcaC09g48432' => 'bca', 'BcaNung07302' => 'bca', 'BolC2t06040H' => 'bol', 'BolC2t07346H' => 'bol', 'BolC3t13817H' => 'bol', 'BolC4t22625H' => 'bol', 'BolC4t23297H' => 'bol', 'BolC8t51278H' => 'bol', 'BolC9t58050H' => 'bol', 'BolC9t58051H' => 'bol', 'BolC9t60163H' => 'bol', 'BraA02t04712Z' => 'bra', 'BraA02t05791Z' => 'bra', 'BraA03t10483Z' => 'bra', 'BraA05t19795Z' => 'bra', 'BraA05t20276Z' => 'bra', 'BraA09t40827Z' => 'bra', 'BraA10t43750Z' => 'bra', 'BraA10t43751Z' => 'bra', 'BraA10t45370Z' => 'bra', 'C02p00400' => 'bna', 'C02p12460' => 'bna', 'C03p13680' => 'bna', 'C04p10270' => 'bna', 'C04p17500' => 'bna', 'C08p37010' => 'bna', 'C09p51880' => 'bna', 'C09p51890' => 'bna', 'C09p74300' => 'bna', 'CAN.G179.26' => 'can', 'CAN.G3384.1' => 'can', 'CAN.G394.68' => 'can', 'CAN.G907.13' => 'can', 'CANSAT11G0012' => 'cansat', 'CANSAT25G1586' => 'cansat', 'CANSAT35G0735' => 'cansat', 'CANSAT54G0556' => 'cansat', 'CANSAT64G0356' => 'cansat', 'CANSAT78G2042' => 'cansat', 'CARHR125920' => 'chi', 'CARHR131910' => 'chi', 'CARHR172390' => 'chi', 'CARHR211140' => 'chi', 'CARHR285850' => 'chi', 'CARHR285860' => 'chi', 'Carub.0004s1347' => 'cru', 'Carub.0004s1960' => 'cru', 'Carub.0005s2880' => 'cru', 'Carub.0006s0107' => 'cru', 'Carub.0008s2015' => 'cru', 'Carub.0008s2016' => 'cru', 'Carub.0008s2017' => 'cru', 'Ca_01315_v3' => 'car', 'Ca_05063_v3' => 'car', 'Ca_10231_v3' => 'car', 'Ca_10913_v3' => 'car', 'Ca_19156_v3' => 'car', 'Ca_23644_v3' => 'car', 'Ca_26735_v3' => 'car', 'Cc01_g13130' => 'ccan', 'Cc02_g21690' => 'ccan', 'Cc03_g03600' => 'ccan', 'Cc06_g02510' => 'ccan', 'CDE02G1265' => 'cde', 'CDE05G0415' => 'cde', 'CDE08G1082' => 'cde', 'Cfa005780' => 'cfa', 'Cfa011522' => 'cfa', 'Cfa011523' => 'cfa', 'Cfa015627' => 'cfa', 'Cfa017359' => 'cfa', 'Ciclev10005687m.g' => 'ccl', 'Ciclev10012173m.g' => 'ccl', 'Ciclev10021621m.g' => 'ccl', 'Ciclev10028968m.g' => 'ccl', 'Ciclev10029907m.g' => 'ccl', 'CiPaw.01G164800' => 'cil', 'CiPaw.07G083700' => 'cil', 'CiPaw.07G127000' => 'cil', 'CiPaw.07G136900' => 'cil', 'CiPaw.08G081700' => 'cil', 'CiPaw.09G194600' => 'cil', 'CiPaw.10G146500' => 'cil', 'CiPaw.13G091500' => 'cil', 'CiPaw.13G091600' => 'cil', 'ClCG00G003390' => 'cla', 'ClCG01G007220' => 'cla', 'ClCG03G001370' => 'cla', 'ClCG04G008100' => 'cla', 'ClCG06G006110' => 'cla', 'ClCG06G006130' => 'cla', 'ClCG10G021210' => 'cla', 'COL.COLO4_07648' => 'col', 'COL.COLO4_07650' => 'col', 'COL.COLO4_07651' => 'col', 'COL.COLO4_14780' => 'col', 'COL.COLO4_18546' => 'col', 'COL.COLO4_18547' => 'col', 'COL.COLO4_23103' => 'col', 'COL.COLO4_30419' => 'col', 'COL.COLO4_34232' => 'col', 'Cpa.g.sc169.20' => 'cpa', 'Cpa.g.sc57.45' => 'cpa', 'Cpa.g.sc58.124' => 'cpa', 'Cpa.g.sc58.125' => 'cpa', 'Cpa.g.sc81.118' => 'cpa', 'Cpa.g.sc81.119' => 'cpa', 'Cre12.g524700' => 'cre', 'CsaV3_1G034430' => 'csa', 'CsaV3_1G034440' => 'csa', 'CsaV3_1G034450' => 'csa', 'CsaV3_3G034830' => 'csa', 'CsaV3_4G025090' => 'csa', 'CsaV3_5G018660' => 'csa', 'CsaV3_6G038160' => 'csa', 'CSS0003447' => 'camsi', 'CSS0017840' => 'camsi', 'CSS0019260' => 'camsi', 'CSS0040375' => 'camsi', 'CSS0042533' => 'camsi', 'DCAR_005960' => 'dca', 'DCAR_012104' => 'dca', 'DCAR_012105' => 'dca', 'DCAR_012293' => 'dca', 'DCAR_015632' => 'dca', 'DCAR_024602' => 'dca', 'DCAR_028752' => 'dca', 'Dinv06261' => 'din', 'Dinv13982' => 'din', 'Dinv17029' => 'din', 'Dinv18463' => 'din', 'Dinv33181' => 'din', 'Dinv35585' => 'din', 'Dinv37161' => 'din', 'Dinv42977' => 'din', 'Dinv43122' => 'din', 'Dinv44517' => 'din', 'Duzib093G0256' => 'dzi', 'Duzib106G1254' => 'dzi', 'Duzib128G1789' => 'dzi', 'Duzib133G0633' => 'dzi', 'Duzib138G0510' => 'dzi', 'Duzib150G1084' => 'dzi', 'Duzib168G0488' => 'dzi', 'Duzib168G1523' => 'dzi', 'Duzib170G0133' => 'dzi', 'ECA234G1433' => 'eca', 'ECA236G1432' => 'eca', 'ECA236G2256' => 'eca', 'ECA236G2365' => 'eca', 'ECA236G4830' => 'eca', 'ECA248G1505' => 'eca', 'EL10Ac3g06431' => 'bvu', 'EL10Ac5g12577' => 'bvu', 'EL10Ac6g13533' => 'bvu', 'EL10Ac7g16045' => 'bvu', 'Eucgr.A01281' => 'egr', 'Eucgr.B02326' => 'egr', 'Eucgr.H03532' => 'egr', 'Eucgr.K00553' => 'egr', 'Eucgr.K03116' => 'egr', 'FAN02G3963' => 'fan', 'FAN05G0438' => 'fan', 'FAN09G2434' => 'fan', 'FAN12G3984' => 'fan', 'FAN14G0798' => 'fan', 'FAN17G0652' => 'fan', 'FAN19G1988' => 'fan', 'FAN22G0632' => 'fan', 'FAN23G0387' => 'fan', 'FAN26G1323' => 'fan', 'FAN28G0666' => 'fan', 'FvH4_1g26080' => 'fve', 'FvH4_3g36780' => 'fve', 'FvH4_4g15270' => 'fve', 'FvH4_6g13490' => 'fve', 'Glyma.01G098700' => 'gma', 'Glyma.03G065900' => 'gma', 'Glyma.03G073754' => 'gma', 'Glyma.03G073758' => 'gma', 'Glyma.03G083200' => 'gma', 'Glyma.03G225500' => 'gma', 'Glyma.05G037766' => 'gma', 'Glyma.07G133500' => 'gma', 'Glyma.10G139400' => 'gma', 'Glyma.10G248900' => 'gma', 'Glyma.11G137800' => 'gma', 'Glyma.12G061300' => 'gma', 'Glyma.13G337900' => 'gma', 'Glyma.15G036600' => 'gma', 'Glyma.18G182800' => 'gma', 'Glyma.19G222500' => 'gma', 'Glyma.20G144800' => 'gma', 'Gohir.A01G222000' => 'ghi', 'Gohir.A03G044000' => 'ghi', 'Gohir.A03G044100' => 'ghi', 'Gohir.A04G083100' => 'ghi', 'Gohir.A07G127200' => 'ghi', 'Gohir.A07G132400' => 'ghi', 'Gohir.A08G000700' => 'ghi', 'Gohir.A11G327300' => 'ghi', 'Gohir.D01G211500' => 'ghi', 'Gohir.D03G123400' => 'ghi', 'Gohir.D03G123500' => 'ghi', 'Gohir.D04G121800' => 'ghi', 'Gohir.D07G131500' => 'ghi', 'Gohir.D07G136600' => 'ghi', 'Gohir.D08G011600' => 'ghi', 'Gohir.D11G346200' => 'ghi', 'Gorai.001G142800' => 'gra', 'Gorai.001G148700' => 'gra', 'Gorai.002G257300' => 'gra', 'Gorai.003G130000' => 'gra', 'Gorai.003G130100' => 'gra', 'Gorai.004G005300' => 'gra', 'Gorai.007G376500' => 'gra', 'Gorai.012G104700' => 'gra', 'GSVIVG01017946001' => 'vvi', 'GSVIVG01024928001' => 'vvi', 'GSVIVG01028227001' => 'vvi', 'GSVIVG01034151001' => 'vvi', 'HanXRQChr05g0135031' => 'han', 'HanXRQChr05g0135041' => 'han', 'HanXRQChr05g0140021' => 'han', 'HanXRQChr06g0178981' => 'han', 'HanXRQChr07g0188251' => 'han', 'HanXRQChr08g0235311' => 'han', 'HanXRQChr09g0271011' => 'han', 'HanXRQChr10g0293321' => 'han', 'HanXRQChr13g0388171' => 'han', 'Haze_00916' => 'cav', 'Haze_05063' => 'cav', 'Haze_20814' => 'cav', 'Haze_24128' => 'cav', 'Hma1.2p1_0745F.1_g212010' => 'hma', 'Hma1.2p1_0757F.1_g213260' => 'hma', 'Hma1.2p1_0936F.1_g238840' => 'hma', 'Hma1.2p1_1735F.1_g299890' => 'hma', 'Hma1.2p1_1861F.1_g305685' => 'hma', 'HPP92_003397' => 'vpl', 'HPP92_012597' => 'vpl', 'HPP92_015520' => 'vpl', 'HPP92_015539' => 'vpl', 'HPP92_020373' => 'vpl', 'Hund04938' => 'sun', 'Hund10677' => 'sun', 'Hund11033' => 'sun', 'Hund12155' => 'sun', 'Lalb_Chr01g0022551' => 'lal', 'Lalb_Chr03g0042341' => 'lal', 'Lalb_Chr07g0192931' => 'lal', 'Lalb_Chr12g0209551' => 'lal', 'Lalb_Chr19g0125251' => 'lal', 'Lalb_Chr19g0137891' => 'lal', 'Lalb_Chr21g0304641' => 'lal', 'Lalb_Chr21g0309881' => 'lal', 'Lj1A5T12' => 'lonja', 'Lj1C148G10' => 'lonja', 'Lj2A93T83' => 'lonja', 'Lj3A738G68' => 'lonja', 'Lj3C966T1' => 'lonja', 'Lj3g0018958' => 'lja', 'Lj3g0021831' => 'lja', 'Lj3g0025443' => 'lja', 'Lj4g0026809' => 'lja', 'Lj5g0012558' => 'lja', 'Lj5g0021586' => 'lja', 'Lsat_1_v5_gn_5_156840' => 'lsa', 'Lsat_1_v5_gn_8_73460' => 'lsa', 'Lsat_1_v5_gn_8_73481' => 'lsa', 'Lsat_1_v5_gn_9_31601' => 'lsa', 'Lsat_1_v5_gn_9_77320' => 'lsa', 'Manes.01G171300' => 'mes', 'Manes.01G171400' => 'mes', 'Manes.01G236100' => 'mes', 'Manes.02G130500' => 'mes', 'Manes.02G130600' => 'mes', 'Manes.03G180200' => 'mes', 'Manes.05G007000' => 'mes', 'Manes.08G084400' => 'mes', 'Manes.09G092600' => 'mes', 'Manes.15G027900' => 'mes', 'MBI04_g40948_MAGBIO' => 'mbi', 'MBI14_g12123_MAGBIO' => 'mbi', 'MBI18_g28915_MAGBIO' => 'mbi', 'MCO09G053' => 'mco', 'MCO11G782' => 'mco', 'MCO15G215' => 'mco', 'MD03G1088500' => 'mdo', 'MD03G1088600' => 'mdo', 'MD04G1130800' => 'mdo', 'MD09G1291700' => 'mdo', 'MD11G1097500' => 'mdo', 'MD11G1097600' => 'mdo', 'MD12G1143900' => 'mdo', 'MD13G1191400' => 'mdo', 'MD16G1191500' => 'mdo', 'Medtr1g085570' => 'mtr', 'Medtr1g104610' => 'mtr', 'Medtr2g097520' => 'mtr', 'Medtr4g021800' => 'mtr', 'Medtr4g021825' => 'mtr', 'Medtr4g064270' => 'mtr', 'Medtr4g064380' => 'mtr', 'Medtr7g062150' => 'mtr', 'MELO3C003138.2' => 'cme', 'MELO3C005187.2' => 'cme', 'MELO3C009252.2' => 'cme', 'MELO3C014481.2' => 'cme', 'MELO3C020616.2' => 'cme', 'MELO3C020617.2' => 'cme', 'MELO3C020618.2' => 'cme', 'Migut.G00328' => 'egut', 'Migut.J00320' => 'egut', 'Migut.L01000' => 'egut', 'Migut.L01953' => 'egut', 'MSTRG.10253' => 'ama', 'MSTRG.19077' => 'ama', 'MSTRG.26780' => 'ama', 'MSTRG.4023' => 'ama', 'MSTRG.5655' => 'ama', 'MSTRG.9992' => 'ama', 'Nitab4.5_0000043g0310' => 'nta', 'Nitab4.5_0000463g0080' => 'nta', 'Nitab4.5_0000705g0170' => 'nta', 'Nitab4.5_0001326g0060' => 'nta', 'Nitab4.5_0001628g0030' => 'nta', 'Nitab4.5_0002103g0110' => 'nta', 'Nitab4.5_0002946g0030' => 'nta', 'Nitab4.5_0004639g0030' => 'nta', 'Nn2g11149' => 'nnu', 'Nn2g13389' => 'nnu', 'Nn4g25326' => 'nnu', 'Nn4g26290' => 'nnu', 'Nn5g29865' => 'nnu', 'Oeu004163.1' => 'oeu', 'Oeu006901.1' => 'oeu', 'Oeu010096.1' => 'oeu', 'Oeu024340.1' => 'oeu', 'Oeu048369.1' => 'oeu', 'Os01g0973000' => 'osa', 'Os03g0273800' => 'osa', 'Os03g0701200' => 'osa', 'Os03g0834050' => 'osa', 'Os07g0634400' => 'osa', 'Peaxi162Scf00092g01414' => 'pax', 'Peaxi162Scf00165g00818' => 'pax', 'Peaxi162Scf00309g00516' => 'pax', 'Peaxi162Scf00774g00218' => 'pax', 'PGR004G1824' => 'pgr', 'PGR004G2606' => 'pgr', 'PGR031G2716' => 'pgr', 'PGR102G2460' => 'pgr', 'PGR142G2599' => 'pgr', 'PGSC0003DMG400000843' => 'stu', 'PGSC0003DMG400008829' => 'stu', 'PGSC0003DMG400030418' => 'stu', 'PGSC0003DMG400031834' => 'stu', 'PGSC0003DMG401028300' => 'stu', 'PGSC0003DMG402028300' => 'stu', 'Phvul.001G219300' => 'pvu', 'Phvul.007G056000' => 'pvu', 'Phvul.007G208000' => 'pvu', 'Phvul.008G119500' => 'pvu', 'Phvul.010G011200' => 'pvu', 'Phvul.010G014800' => 'pvu', 'Phvul.011G062900' => 'pvu', 'Phvul.L007043' => 'pvu', 'Potri.001G242300' => 'ptr', 'Potri.002G185300' => 'ptr', 'Potri.006G086900' => 'ptr', 'Potri.008G151700' => 'ptr', 'Potri.009G033500' => 'ptr', 'Potri.010G089300' => 'ptr', 'Potri.014G110800' => 'ptr', 'Pp3c27_8130' => 'ppa', 'Pp3c6_27410' => 'ppa', 'PRCOL_00001659' => 'pco', 'PRCOL_00001927' => 'pco', 'PRCOL_00003649' => 'pco', 'Prupe.1G011600' => 'ppe', 'Prupe.3G000800' => 'ppe', 'Prupe.3G001100' => 'ppe', 'Prupe.6G072700' => 'ppe', 'Prupe.6G072800' => 'ppe', 'Prupe.6G257300' => 'ppe', 'Prupe.8G033000' => 'ppe', 'Psat0s2633g0080' => 'psa', 'Psat0s3396g0080' => 'psa', 'Psat0s3396g0200' => 'psa', 'Psat3g139080' => 'psa', 'Psat5g285080' => 'psa', 'Psat6g157760' => 'psa', 'Psat6g208440' => 'psa', 'Psat7g215320' => 'psa', 'Psat7g215400' => 'psa', 'Psat7g235600' => 'psa', 'Psat7g235760' => 'psa', 'PSO063G4603' => 'pso', 'PSO210G0182' => 'pso', 'PSO210G0196' => 'pso', 'PSO339G0394' => 'pso', 'PSO339G4127' => 'pso', 'PSO513G0064' => 'pso', 'PSO761G0079' => 'pso', 'QL01p031003' => 'qlo', 'QL01p031078' => 'qlo', 'QL06p003004' => 'qlo', 'QL07p048731' => 'qlo', 'QL09p037427' => 'qlo', 'RcHm_v2.0_Chr3g0466361' => 'rch', 'RcHm_v2.0_Chr3g0485571' => 'rch', 'RcHm_v2.0_Chr4g0416551' => 'rch', 'RcHm_v2.0_Chr5g0065831' => 'rch', 'Rhsim01G0230500' => 'rsi', 'Rhsim05G0194000' => 'rsi', 'Rhsim08G0250400' => 'rsi', 'Sabra02G0131000' => 'sbr', 'Sabra06G0066300' => 'sbr', 'Sabra08G0115500' => 'sbr', 'Sabra09G0023900' => 'sbr', 'Sabra10G0054000' => 'sbr', 'Sabra14G0081500' => 'sbr', 'Sabra16G0147100' => 'sbr', 'SalBow2G2957' => 'sbo', 'SalBow4G3320' => 'sbo', 'SalBow8G1894' => 'sbo', 'Sc07g0007950' => 'sci', 'Sc12g0001360' => 'sci', 'Sc13g0004330' => 'sci', 'Sc20g0005010' => 'sci', 'Sed0000361' => 'sed', 'Sed0001706' => 'sed', 'Sed0002422' => 'sed', 'Sed0004029' => 'sed', 'Sed0004602' => 'sed', 'Sed0004943' => 'sed', 'Sed0008646' => 'sed', 'Sed0023313' => 'sed', 'Sed0024843' => 'sed', 'SEGI_00081' => 'sgi', 'SEGI_00947' => 'sgi', 'SEGI_04046' => 'sgi', 'SEGI_06880' => 'sgi', 'SEGI_09736' => 'sgi', 'SEGI_12741' => 'sgi', 'SEGI_14530' => 'sgi', 'SEGI_20705' => 'sgi', 'SEGI_26088' => 'sgi', 'SEGI_28323' => 'sgi', 'SEGI_33343' => 'sgi', 'SGA_v2.0_scaffold126G33775' => 'sas', 'SGA_v2.0_scaffold2G01337' => 'sas', 'SGA_v2.0_scaffold38G15006' => 'sas', 'SGA_v2.0_scaffold39G15264' => 'sas', 'SGA_v2.0_scaffold453G51880' => 'sas', 'SHI12696' => 'shi', 'SMO367G1096' => 'smo', 'Solyc01g068630.3' => 'sly', 'Solyc05g011880.3' => 'sly', 'Solyc06g076300.3' => 'sly', 'Solyc09g010940.4' => 'sly', 'Solyc09g075890.3' => 'sly', 'Sopen01g030560' => 'spe', 'Sopen05g006630' => 'spe', 'Sopen06g032720' => 'spe', 'Sopen09g005660' => 'spe', 'Sopen09g030690' => 'spe', 'Sp4g14540' => 'spa', 'Sp4g20030' => 'spa', 'Sp5g01320' => 'spa', 'Sp6g21170' => 'spa', 'Sp6g21180' => 'spa', 'Sp6g21190' => 'spa', 'Sp6g40220' => 'spa', 'TAR362G0122' => 'tar', 'TAR362G1338' => 'tar', 'TAR369G0590' => 'tar', 'TAR371G0824' => 'tar', 'TAR622G1429' => 'tar', 'TAR623G0734' => 'tar', 'TAR625G0441' => 'tar', 'TAR629G0976' => 'tar', 'TAR633G1195' => 'tar', 'TAR636G2660' => 'tar', 'THA.LOC104799440' => 'tha', 'THA.LOC104800966' => 'tha', 'THA.LOC104806559' => 'tha', 'THA.LOC104810765' => 'tha', 'THA.LOC104816266' => 'tha', 'THA.LOC104817419' => 'tha', 'THA.LOC104827021' => 'tha', 'Thecc.01G327400' => 'tca', 'Thecc.04G229200' => 'tca', 'Thecc.05G037400' => 'tca', 'Thecc.09G318600' => 'tca', 'Thecc.09G318700' => 'tca', 'Thhalv10006238m.g' => 'esa', 'Thhalv10014321m.g' => 'esa', 'Thhalv10014335m.g' => 'esa', 'Thhalv10015826m.g' => 'esa', 'Thhalv10017107m.g' => 'esa', 'Thhalv10017180m.g' => 'esa', 'Thhalv10029339m.g' => 'esa', 'TPR.G1699' => 'tpr', 'TPR.G23609' => 'tpr', 'TPR.G3081' => 'tpr', 'TPR.G40397' => 'tpr', 'TPR.G5522' => 'tpr', 'TPR.G5618' => 'tpr', 'TPR.G5626' => 'tpr', 'TWI09G1632' => 'twi', 'TWI23G1230' => 'twi', 'TWI53G1064' => 'twi', 'TWI59G0751' => 'twi', 'TWI74G0947' => 'twi', 'TWI77G0337' => 'twi', 'TWI79G1254' => 'twi', 'unitig_0.g2341' => 'ugi', 'unitig_26.g10006' => 'ugi', 'unitig_26.g10008' => 'ugi', 'unitig_26.g9192' => 'ugi', 'vmacro14547' => 'vma', 'vmacro15333' => 'vma', 'vmacro18743' => 'vma', 'vmacro20166' => 'vma', 'VMungo0331G0523' => 'vmu', 'VMungo0331G1202' => 'vmu', 'VMungo0720G1228' => 'vmu', 'VMungo0720G1514' => 'vmu', 'VMungo1080G0169' => 'vmu', 'VMungo1127G1475' => 'vmu', 'VMungo1383G1208' => 'vmu', 'VMungo1383G1698' => 'vmu', 'Zm00001eb012270' => 'zma', 'Zm00001eb054100' => 'zma', 'Zm00001eb063350' => 'zma', 'Zm00001eb328560' => 'zma', 'Zm00001eb342820' => 'zma', 'Zm00001eb362210' => 'zma', 'Zm00001eb397730' => 'zma', 'Zm00001eb399750' => 'zma' ) $gf_id = 'HOM05D000959' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000959' ) $data_identifier = 'HOM05D000959' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 5, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 5, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 10, 'mbi' => (int) 3, 'mco' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 2, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 3, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 11, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399750' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000959', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '622', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p07100' => 'bna', 'A03p11720' => 'bna', 'A05p08300' => 'bna', 'A05p13380' => 'bna', 'A09p54130' => 'bna', 'A10p16690' => 'bna', 'A10p16700' => 'bna', 'A10p33390' => 'bna', 'Aa31LG10G16020' => 'aar', 'Aa31LG1G11810' => 'aar', 'Aa31LG1G11830' => 'aar', 'Aa31LG1G22510' => 'aar', 'Aa31LG5G4890' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5793' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2310' => 'aag', 'Actinidia08499' => 'ach', 'Actinidia11262' => 'ach', 'Actinidia23926' => 'ach', 'Actinidia34420' => 'ach', 'Actinidia36970' => 'ach', 'Ah.02g111220' => 'amhyb', 'Ah.15g097750' => 'amhyb', 'AL4G27500' => 'aly', 'AL6G11470' => 'aly', 'AL8G35950' => 'aly', 'AL8G35960' => 'aly', 'AL8G35970' => 'aly', 'Aqoxy1G00912' => 'aox', 'Aqoxy2G02253' => 'aox', 'Aqoxy2G02411' => 'aox', 'Aqoxy5G00485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BZ66YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K8ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM4FUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6BF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HFV7XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25JBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0YNNV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MAKK6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P70IT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP2Z6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V61LZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YWP64R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3S9AI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7PGHH' => 'arhy', 'AT2G32150' => 'ath', 'AT3G62040' => 'ath', 'AT5G02230' => 'ath', 'AT5G59480' => 'ath', 'AT5G59490' => 'ath', 'ATR0332G060' => 'atr', 'ATR0559G190' => 'atr', 'ATR0693G294' => 'atr', 'Atru.chr3.3975' => 'acertr', 'Atru.chr3.3976' => 'acertr', 'Atru.chr3.3977' => 'acertr', 'Atru.chr4.2498' => 'acertr', 'Atru.chr5.838' => 'acertr', 'Atru.chr8.1990' => 'acertr', 'Atru.chr8.1991' => 'acertr', 'Atru.chr8.1992' => 'acertr', 'AUR62001759' => 'cqu', 'AUR62009545' => 'cqu', 'AUR62010474' => 'cqu', 'AUR62025820' => 'cqu', 'AUR62030422' => 'cqu', 'AUR62033605' => 'cqu', 'AUR62038615' => 'cqu', 'AUR62041347' => 'cqu', 'BcaB01g04574' => 'bca', 'BcaB02g09263' => 'bca', 'BcaB02g10453' => 'bca', 'BcaB05g22513' => 'bca', 'BcaB08g36253' => 'bca', 'BcaB08g36254' => 'bca', 'BcaC01g06519' => 'bca', 'BcaC02g11889' => 'bca', 'BcaC03g14010' => 'bca', 'BcaC03g18439' => 'bca', 'BcaC04g19765' => 'bca', 'BcaC09g48432' => 'bca', 'BcaNung07302' => 'bca', 'BolC2t06040H' => 'bol', 'BolC2t07346H' => 'bol', 'BolC3t13817H' => 'bol', 'BolC4t22625H' => 'bol', 'BolC4t23297H' => 'bol', 'BolC8t51278H' => 'bol', 'BolC9t58050H' => 'bol', 'BolC9t58051H' => 'bol', 'BolC9t60163H' => 'bol', 'BraA02t04712Z' => 'bra', 'BraA02t05791Z' => 'bra', 'BraA03t10483Z' => 'bra', 'BraA05t19795Z' => 'bra', 'BraA05t20276Z' => 'bra', 'BraA09t40827Z' => 'bra', 'BraA10t43750Z' => 'bra', 'BraA10t43751Z' => 'bra', 'BraA10t45370Z' => 'bra', 'C02p00400' => 'bna', 'C02p12460' => 'bna', 'C03p13680' => 'bna', 'C04p10270' => 'bna', 'C04p17500' => 'bna', 'C08p37010' => 'bna', 'C09p51880' => 'bna', 'C09p51890' => 'bna', 'C09p74300' => 'bna', 'CAN.G179.26' => 'can', 'CAN.G3384.1' => 'can', 'CAN.G394.68' => 'can', 'CAN.G907.13' => 'can', 'CANSAT11G0012' => 'cansat', 'CANSAT25G1586' => 'cansat', 'CANSAT35G0735' => 'cansat', 'CANSAT54G0556' => 'cansat', 'CANSAT64G0356' => 'cansat', 'CANSAT78G2042' => 'cansat', 'CARHR125920' => 'chi', 'CARHR131910' => 'chi', 'CARHR172390' => 'chi', 'CARHR211140' => 'chi', 'CARHR285850' => 'chi', 'CARHR285860' => 'chi', 'Carub.0004s1347' => 'cru', 'Carub.0004s1960' => 'cru', 'Carub.0005s2880' => 'cru', 'Carub.0006s0107' => 'cru', 'Carub.0008s2015' => 'cru', 'Carub.0008s2016' => 'cru', 'Carub.0008s2017' => 'cru', 'Ca_01315_v3' => 'car', 'Ca_05063_v3' => 'car', 'Ca_10231_v3' => 'car', 'Ca_10913_v3' => 'car', 'Ca_19156_v3' => 'car', 'Ca_23644_v3' => 'car', 'Ca_26735_v3' => 'car', 'Cc01_g13130' => 'ccan', 'Cc02_g21690' => 'ccan', 'Cc03_g03600' => 'ccan', 'Cc06_g02510' => 'ccan', 'CDE02G1265' => 'cde', 'CDE05G0415' => 'cde', 'CDE08G1082' => 'cde', 'Cfa005780' => 'cfa', 'Cfa011522' => 'cfa', 'Cfa011523' => 'cfa', 'Cfa015627' => 'cfa', 'Cfa017359' => 'cfa', 'Ciclev10005687m.g' => 'ccl', 'Ciclev10012173m.g' => 'ccl', 'Ciclev10021621m.g' => 'ccl', 'Ciclev10028968m.g' => 'ccl', 'Ciclev10029907m.g' => 'ccl', 'CiPaw.01G164800' => 'cil', 'CiPaw.07G083700' => 'cil', 'CiPaw.07G127000' => 'cil', 'CiPaw.07G136900' => 'cil', 'CiPaw.08G081700' => 'cil', 'CiPaw.09G194600' => 'cil', 'CiPaw.10G146500' => 'cil', 'CiPaw.13G091500' => 'cil', 'CiPaw.13G091600' => 'cil', 'ClCG00G003390' => 'cla', 'ClCG01G007220' => 'cla', 'ClCG03G001370' => 'cla', 'ClCG04G008100' => 'cla', 'ClCG06G006110' => 'cla', 'ClCG06G006130' => 'cla', 'ClCG10G021210' => 'cla', 'COL.COLO4_07648' => 'col', 'COL.COLO4_07650' => 'col', 'COL.COLO4_07651' => 'col', 'COL.COLO4_14780' => 'col', 'COL.COLO4_18546' => 'col', 'COL.COLO4_18547' => 'col', 'COL.COLO4_23103' => 'col', 'COL.COLO4_30419' => 'col', 'COL.COLO4_34232' => 'col', 'Cpa.g.sc169.20' => 'cpa', 'Cpa.g.sc57.45' => 'cpa', 'Cpa.g.sc58.124' => 'cpa', 'Cpa.g.sc58.125' => 'cpa', 'Cpa.g.sc81.118' => 'cpa', 'Cpa.g.sc81.119' => 'cpa', 'Cre12.g524700' => 'cre', 'CsaV3_1G034430' => 'csa', 'CsaV3_1G034440' => 'csa', 'CsaV3_1G034450' => 'csa', 'CsaV3_3G034830' => 'csa', 'CsaV3_4G025090' => 'csa', 'CsaV3_5G018660' => 'csa', 'CsaV3_6G038160' => 'csa', 'CSS0003447' => 'camsi', 'CSS0017840' => 'camsi', 'CSS0019260' => 'camsi', 'CSS0040375' => 'camsi', 'CSS0042533' => 'camsi', 'DCAR_005960' => 'dca', 'DCAR_012104' => 'dca', 'DCAR_012105' => 'dca', 'DCAR_012293' => 'dca', 'DCAR_015632' => 'dca', 'DCAR_024602' => 'dca', 'DCAR_028752' => 'dca', 'Dinv06261' => 'din', 'Dinv13982' => 'din', 'Dinv17029' => 'din', 'Dinv18463' => 'din', 'Dinv33181' => 'din', 'Dinv35585' => 'din', 'Dinv37161' => 'din', 'Dinv42977' => 'din', 'Dinv43122' => 'din', 'Dinv44517' => 'din', 'Duzib093G0256' => 'dzi', 'Duzib106G1254' => 'dzi', 'Duzib128G1789' => 'dzi', 'Duzib133G0633' => 'dzi', 'Duzib138G0510' => 'dzi', 'Duzib150G1084' => 'dzi', 'Duzib168G0488' => 'dzi', 'Duzib168G1523' => 'dzi', 'Duzib170G0133' => 'dzi', 'ECA234G1433' => 'eca', 'ECA236G1432' => 'eca', 'ECA236G2256' => 'eca', 'ECA236G2365' => 'eca', 'ECA236G4830' => 'eca', 'ECA248G1505' => 'eca', 'EL10Ac3g06431' => 'bvu', 'EL10Ac5g12577' => 'bvu', 'EL10Ac6g13533' => 'bvu', 'EL10Ac7g16045' => 'bvu', 'Eucgr.A01281' => 'egr', 'Eucgr.B02326' => 'egr', 'Eucgr.H03532' => 'egr', 'Eucgr.K00553' => 'egr', 'Eucgr.K03116' => 'egr', 'FAN02G3963' => 'fan', 'FAN05G0438' => 'fan', 'FAN09G2434' => 'fan', 'FAN12G3984' => 'fan', 'FAN14G0798' => 'fan', 'FAN17G0652' => 'fan', 'FAN19G1988' => 'fan', 'FAN22G0632' => 'fan', 'FAN23G0387' => 'fan', 'FAN26G1323' => 'fan', 'FAN28G0666' => 'fan', 'FvH4_1g26080' => 'fve', 'FvH4_3g36780' => 'fve', 'FvH4_4g15270' => 'fve', 'FvH4_6g13490' => 'fve', 'Glyma.01G098700' => 'gma', 'Glyma.03G065900' => 'gma', 'Glyma.03G073754' => 'gma', 'Glyma.03G073758' => 'gma', 'Glyma.03G083200' => 'gma', 'Glyma.03G225500' => 'gma', 'Glyma.05G037766' => 'gma', 'Glyma.07G133500' => 'gma', 'Glyma.10G139400' => 'gma', 'Glyma.10G248900' => 'gma', 'Glyma.11G137800' => 'gma', 'Glyma.12G061300' => 'gma', 'Glyma.13G337900' => 'gma', 'Glyma.15G036600' => 'gma', 'Glyma.18G182800' => 'gma', 'Glyma.19G222500' => 'gma', 'Glyma.20G144800' => 'gma', 'Gohir.A01G222000' => 'ghi', 'Gohir.A03G044000' => 'ghi', 'Gohir.A03G044100' => 'ghi', 'Gohir.A04G083100' => 'ghi', 'Gohir.A07G127200' => 'ghi', 'Gohir.A07G132400' => 'ghi', 'Gohir.A08G000700' => 'ghi', 'Gohir.A11G327300' => 'ghi', 'Gohir.D01G211500' => 'ghi', 'Gohir.D03G123400' => 'ghi', 'Gohir.D03G123500' => 'ghi', 'Gohir.D04G121800' => 'ghi', 'Gohir.D07G131500' => 'ghi', 'Gohir.D07G136600' => 'ghi', 'Gohir.D08G011600' => 'ghi', 'Gohir.D11G346200' => 'ghi', 'Gorai.001G142800' => 'gra', 'Gorai.001G148700' => 'gra', 'Gorai.002G257300' => 'gra', 'Gorai.003G130000' => 'gra', 'Gorai.003G130100' => 'gra', 'Gorai.004G005300' => 'gra', 'Gorai.007G376500' => 'gra', 'Gorai.012G104700' => 'gra', 'GSVIVG01017946001' => 'vvi', 'GSVIVG01024928001' => 'vvi', 'GSVIVG01028227001' => 'vvi', 'GSVIVG01034151001' => 'vvi', 'HanXRQChr05g0135031' => 'han', 'HanXRQChr05g0135041' => 'han', 'HanXRQChr05g0140021' => 'han', 'HanXRQChr06g0178981' => 'han', 'HanXRQChr07g0188251' => 'han', 'HanXRQChr08g0235311' => 'han', 'HanXRQChr09g0271011' => 'han', 'HanXRQChr10g0293321' => 'han', 'HanXRQChr13g0388171' => 'han', 'Haze_00916' => 'cav', 'Haze_05063' => 'cav', 'Haze_20814' => 'cav', 'Haze_24128' => 'cav', 'Hma1.2p1_0745F.1_g212010' => 'hma', 'Hma1.2p1_0757F.1_g213260' => 'hma', 'Hma1.2p1_0936F.1_g238840' => 'hma', 'Hma1.2p1_1735F.1_g299890' => 'hma', 'Hma1.2p1_1861F.1_g305685' => 'hma', 'HPP92_003397' => 'vpl', 'HPP92_012597' => 'vpl', 'HPP92_015520' => 'vpl', 'HPP92_015539' => 'vpl', 'HPP92_020373' => 'vpl', 'Hund04938' => 'sun', 'Hund10677' => 'sun', 'Hund11033' => 'sun', 'Hund12155' => 'sun', 'Lalb_Chr01g0022551' => 'lal', 'Lalb_Chr03g0042341' => 'lal', 'Lalb_Chr07g0192931' => 'lal', 'Lalb_Chr12g0209551' => 'lal', 'Lalb_Chr19g0125251' => 'lal', 'Lalb_Chr19g0137891' => 'lal', 'Lalb_Chr21g0304641' => 'lal', 'Lalb_Chr21g0309881' => 'lal', 'Lj1A5T12' => 'lonja', 'Lj1C148G10' => 'lonja', 'Lj2A93T83' => 'lonja', 'Lj3A738G68' => 'lonja', 'Lj3C966T1' => 'lonja', 'Lj3g0018958' => 'lja', 'Lj3g0021831' => 'lja', 'Lj3g0025443' => 'lja', 'Lj4g0026809' => 'lja', 'Lj5g0012558' => 'lja', 'Lj5g0021586' => 'lja', 'Lsat_1_v5_gn_5_156840' => 'lsa', 'Lsat_1_v5_gn_8_73460' => 'lsa', 'Lsat_1_v5_gn_8_73481' => 'lsa', 'Lsat_1_v5_gn_9_31601' => 'lsa', 'Lsat_1_v5_gn_9_77320' => 'lsa', 'Manes.01G171300' => 'mes', 'Manes.01G171400' => 'mes', 'Manes.01G236100' => 'mes', 'Manes.02G130500' => 'mes', 'Manes.02G130600' => 'mes', 'Manes.03G180200' => 'mes', 'Manes.05G007000' => 'mes', 'Manes.08G084400' => 'mes', 'Manes.09G092600' => 'mes', 'Manes.15G027900' => 'mes', 'MBI04_g40948_MAGBIO' => 'mbi', 'MBI14_g12123_MAGBIO' => 'mbi', 'MBI18_g28915_MAGBIO' => 'mbi', 'MCO09G053' => 'mco', 'MCO11G782' => 'mco', 'MCO15G215' => 'mco', 'MD03G1088500' => 'mdo', 'MD03G1088600' => 'mdo', 'MD04G1130800' => 'mdo', 'MD09G1291700' => 'mdo', 'MD11G1097500' => 'mdo', 'MD11G1097600' => 'mdo', 'MD12G1143900' => 'mdo', 'MD13G1191400' => 'mdo', 'MD16G1191500' => 'mdo', 'Medtr1g085570' => 'mtr', 'Medtr1g104610' => 'mtr', 'Medtr2g097520' => 'mtr', 'Medtr4g021800' => 'mtr', 'Medtr4g021825' => 'mtr', 'Medtr4g064270' => 'mtr', 'Medtr4g064380' => 'mtr', 'Medtr7g062150' => 'mtr', 'MELO3C003138.2' => 'cme', 'MELO3C005187.2' => 'cme', 'MELO3C009252.2' => 'cme', 'MELO3C014481.2' => 'cme', 'MELO3C020616.2' => 'cme', 'MELO3C020617.2' => 'cme', 'MELO3C020618.2' => 'cme', 'Migut.G00328' => 'egut', 'Migut.J00320' => 'egut', 'Migut.L01000' => 'egut', 'Migut.L01953' => 'egut', 'MSTRG.10253' => 'ama', 'MSTRG.19077' => 'ama', 'MSTRG.26780' => 'ama', 'MSTRG.4023' => 'ama', 'MSTRG.5655' => 'ama', 'MSTRG.9992' => 'ama', 'Nitab4.5_0000043g0310' => 'nta', 'Nitab4.5_0000463g0080' => 'nta', 'Nitab4.5_0000705g0170' => 'nta', 'Nitab4.5_0001326g0060' => 'nta', 'Nitab4.5_0001628g0030' => 'nta', 'Nitab4.5_0002103g0110' => 'nta', 'Nitab4.5_0002946g0030' => 'nta', 'Nitab4.5_0004639g0030' => 'nta', 'Nn2g11149' => 'nnu', 'Nn2g13389' => 'nnu', 'Nn4g25326' => 'nnu', 'Nn4g26290' => 'nnu', 'Nn5g29865' => 'nnu', 'Oeu004163.1' => 'oeu', 'Oeu006901.1' => 'oeu', 'Oeu010096.1' => 'oeu', 'Oeu024340.1' => 'oeu', 'Oeu048369.1' => 'oeu', 'Os01g0973000' => 'osa', 'Os03g0273800' => 'osa', 'Os03g0701200' => 'osa', 'Os03g0834050' => 'osa', 'Os07g0634400' => 'osa', 'Peaxi162Scf00092g01414' => 'pax', 'Peaxi162Scf00165g00818' => 'pax', 'Peaxi162Scf00309g00516' => 'pax', 'Peaxi162Scf00774g00218' => 'pax', 'PGR004G1824' => 'pgr', 'PGR004G2606' => 'pgr', 'PGR031G2716' => 'pgr', 'PGR102G2460' => 'pgr', 'PGR142G2599' => 'pgr', 'PGSC0003DMG400000843' => 'stu', 'PGSC0003DMG400008829' => 'stu', 'PGSC0003DMG400030418' => 'stu', 'PGSC0003DMG400031834' => 'stu', 'PGSC0003DMG401028300' => 'stu', 'PGSC0003DMG402028300' => 'stu', 'Phvul.001G219300' => 'pvu', 'Phvul.007G056000' => 'pvu', 'Phvul.007G208000' => 'pvu', 'Phvul.008G119500' => 'pvu', 'Phvul.010G011200' => 'pvu', 'Phvul.010G014800' => 'pvu', 'Phvul.011G062900' => 'pvu', 'Phvul.L007043' => 'pvu', 'Potri.001G242300' => 'ptr', 'Potri.002G185300' => 'ptr', 'Potri.006G086900' => 'ptr', 'Potri.008G151700' => 'ptr', 'Potri.009G033500' => 'ptr', 'Potri.010G089300' => 'ptr', 'Potri.014G110800' => 'ptr', 'Pp3c27_8130' => 'ppa', 'Pp3c6_27410' => 'ppa', 'PRCOL_00001659' => 'pco', 'PRCOL_00001927' => 'pco', 'PRCOL_00003649' => 'pco', 'Prupe.1G011600' => 'ppe', 'Prupe.3G000800' => 'ppe', 'Prupe.3G001100' => 'ppe', 'Prupe.6G072700' => 'ppe', 'Prupe.6G072800' => 'ppe', 'Prupe.6G257300' => 'ppe', 'Prupe.8G033000' => 'ppe', 'Psat0s2633g0080' => 'psa', 'Psat0s3396g0080' => 'psa', 'Psat0s3396g0200' => 'psa', 'Psat3g139080' => 'psa', 'Psat5g285080' => 'psa', 'Psat6g157760' => 'psa', 'Psat6g208440' => 'psa', 'Psat7g215320' => 'psa', 'Psat7g215400' => 'psa', 'Psat7g235600' => 'psa', 'Psat7g235760' => 'psa', 'PSO063G4603' => 'pso', 'PSO210G0182' => 'pso', 'PSO210G0196' => 'pso', 'PSO339G0394' => 'pso', 'PSO339G4127' => 'pso', 'PSO513G0064' => 'pso', 'PSO761G0079' => 'pso', 'QL01p031003' => 'qlo', 'QL01p031078' => 'qlo', 'QL06p003004' => 'qlo', 'QL07p048731' => 'qlo', 'QL09p037427' => 'qlo', 'RcHm_v2.0_Chr3g0466361' => 'rch', 'RcHm_v2.0_Chr3g0485571' => 'rch', 'RcHm_v2.0_Chr4g0416551' => 'rch', 'RcHm_v2.0_Chr5g0065831' => 'rch', 'Rhsim01G0230500' => 'rsi', 'Rhsim05G0194000' => 'rsi', 'Rhsim08G0250400' => 'rsi', 'Sabra02G0131000' => 'sbr', 'Sabra06G0066300' => 'sbr', 'Sabra08G0115500' => 'sbr', 'Sabra09G0023900' => 'sbr', 'Sabra10G0054000' => 'sbr', 'Sabra14G0081500' => 'sbr', 'Sabra16G0147100' => 'sbr', 'SalBow2G2957' => 'sbo', 'SalBow4G3320' => 'sbo', 'SalBow8G1894' => 'sbo', 'Sc07g0007950' => 'sci', 'Sc12g0001360' => 'sci', 'Sc13g0004330' => 'sci', 'Sc20g0005010' => 'sci', 'Sed0000361' => 'sed', 'Sed0001706' => 'sed', 'Sed0002422' => 'sed', 'Sed0004029' => 'sed', 'Sed0004602' => 'sed', 'Sed0004943' => 'sed', 'Sed0008646' => 'sed', 'Sed0023313' => 'sed', 'Sed0024843' => 'sed', 'SEGI_00081' => 'sgi', 'SEGI_00947' => 'sgi', 'SEGI_04046' => 'sgi', 'SEGI_06880' => 'sgi', 'SEGI_09736' => 'sgi', 'SEGI_12741' => 'sgi', 'SEGI_14530' => 'sgi', 'SEGI_20705' => 'sgi', 'SEGI_26088' => 'sgi', 'SEGI_28323' => 'sgi', 'SEGI_33343' => 'sgi', 'SGA_v2.0_scaffold126G33775' => 'sas', 'SGA_v2.0_scaffold2G01337' => 'sas', 'SGA_v2.0_scaffold38G15006' => 'sas', 'SGA_v2.0_scaffold39G15264' => 'sas', 'SGA_v2.0_scaffold453G51880' => 'sas', 'SHI12696' => 'shi', 'SMO367G1096' => 'smo', 'Solyc01g068630.3' => 'sly', 'Solyc05g011880.3' => 'sly', 'Solyc06g076300.3' => 'sly', 'Solyc09g010940.4' => 'sly', 'Solyc09g075890.3' => 'sly', 'Sopen01g030560' => 'spe', 'Sopen05g006630' => 'spe', 'Sopen06g032720' => 'spe', 'Sopen09g005660' => 'spe', 'Sopen09g030690' => 'spe', 'Sp4g14540' => 'spa', 'Sp4g20030' => 'spa', 'Sp5g01320' => 'spa', 'Sp6g21170' => 'spa', 'Sp6g21180' => 'spa', 'Sp6g21190' => 'spa', 'Sp6g40220' => 'spa', 'TAR362G0122' => 'tar', 'TAR362G1338' => 'tar', 'TAR369G0590' => 'tar', 'TAR371G0824' => 'tar', 'TAR622G1429' => 'tar', 'TAR623G0734' => 'tar', 'TAR625G0441' => 'tar', 'TAR629G0976' => 'tar', 'TAR633G1195' => 'tar', 'TAR636G2660' => 'tar', 'THA.LOC104799440' => 'tha', 'THA.LOC104800966' => 'tha', 'THA.LOC104806559' => 'tha', 'THA.LOC104810765' => 'tha', 'THA.LOC104816266' => 'tha', 'THA.LOC104817419' => 'tha', 'THA.LOC104827021' => 'tha', 'Thecc.01G327400' => 'tca', 'Thecc.04G229200' => 'tca', 'Thecc.05G037400' => 'tca', 'Thecc.09G318600' => 'tca', 'Thecc.09G318700' => 'tca', 'Thhalv10006238m.g' => 'esa', 'Thhalv10014321m.g' => 'esa', 'Thhalv10014335m.g' => 'esa', 'Thhalv10015826m.g' => 'esa', 'Thhalv10017107m.g' => 'esa', 'Thhalv10017180m.g' => 'esa', 'Thhalv10029339m.g' => 'esa', 'TPR.G1699' => 'tpr', 'TPR.G23609' => 'tpr', 'TPR.G3081' => 'tpr', 'TPR.G40397' => 'tpr', 'TPR.G5522' => 'tpr', 'TPR.G5618' => 'tpr', 'TPR.G5626' => 'tpr', 'TWI09G1632' => 'twi', 'TWI23G1230' => 'twi', 'TWI53G1064' => 'twi', 'TWI59G0751' => 'twi', 'TWI74G0947' => 'twi', 'TWI77G0337' => 'twi', 'TWI79G1254' => 'twi', 'unitig_0.g2341' => 'ugi', 'unitig_26.g10006' => 'ugi', 'unitig_26.g10008' => 'ugi', 'unitig_26.g9192' => 'ugi', 'vmacro14547' => 'vma', 'vmacro15333' => 'vma', 'vmacro18743' => 'vma', 'vmacro20166' => 'vma', 'VMungo0331G0523' => 'vmu', 'VMungo0331G1202' => 'vmu', 'VMungo0720G1228' => 'vmu', 'VMungo0720G1514' => 'vmu', 'VMungo1080G0169' => 'vmu', 'VMungo1127G1475' => 'vmu', 'VMungo1383G1208' => 'vmu', 'VMungo1383G1698' => 'vmu', 'Zm00001eb012270' => 'zma', 'Zm00001eb054100' => 'zma', 'Zm00001eb063350' => 'zma', 'Zm00001eb328560' => 'zma', 'Zm00001eb342820' => 'zma', 'Zm00001eb362210' => 'zma', 'Zm00001eb397730' => 'zma', 'Zm00001eb399750' => 'zma' ), 'gf_id' => 'HOM05D000959', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000959' ), 'data_identifier' => 'HOM05D000959', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000959', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '622', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p07100' => 'bna', 'A03p11720' => 'bna', 'A05p08300' => 'bna', 'A05p13380' => 'bna', 'A09p54130' => 'bna', 'A10p16690' => 'bna', 'A10p16700' => 'bna', 'A10p33390' => 'bna', 'Aa31LG10G16020' => 'aar', 'Aa31LG1G11810' => 'aar', 'Aa31LG1G11830' => 'aar', 'Aa31LG1G22510' => 'aar', 'Aa31LG5G4890' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5793' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2310' => 'aag', 'Actinidia08499' => 'ach', 'Actinidia11262' => 'ach', 'Actinidia23926' => 'ach', 'Actinidia34420' => 'ach', 'Actinidia36970' => 'ach', 'Ah.02g111220' => 'amhyb', 'Ah.15g097750' => 'amhyb', 'AL4G27500' => 'aly', 'AL6G11470' => 'aly', 'AL8G35950' => 'aly', 'AL8G35960' => 'aly', 'AL8G35970' => 'aly', 'Aqoxy1G00912' => 'aox', 'Aqoxy2G02253' => 'aox', 'Aqoxy2G02411' => 'aox', 'Aqoxy5G00485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BZ66YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K8ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM4FUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6BF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HFV7XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25JBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0YNNV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MAKK6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P70IT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP2Z6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V61LZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YWP64R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3S9AI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7PGHH' => 'arhy', 'AT2G32150' => 'ath', 'AT3G62040' => 'ath', 'AT5G02230' => 'ath', 'AT5G59480' => 'ath', 'AT5G59490' => 'ath', 'ATR0332G060' => 'atr', 'ATR0559G190' => 'atr', 'ATR0693G294' => 'atr', 'Atru.chr3.3975' => 'acertr', 'Atru.chr3.3976' => 'acertr', 'Atru.chr3.3977' => 'acertr', 'Atru.chr4.2498' => 'acertr', 'Atru.chr5.838' => 'acertr', 'Atru.chr8.1990' => 'acertr', 'Atru.chr8.1991' => 'acertr', 'Atru.chr8.1992' => 'acertr', 'AUR62001759' => 'cqu', 'AUR62009545' => 'cqu', 'AUR62010474' => 'cqu', 'AUR62025820' => 'cqu', 'AUR62030422' => 'cqu', 'AUR62033605' => 'cqu', 'AUR62038615' => 'cqu', 'AUR62041347' => 'cqu', 'BcaB01g04574' => 'bca', 'BcaB02g09263' => 'bca', 'BcaB02g10453' => 'bca', 'BcaB05g22513' => 'bca', 'BcaB08g36253' => 'bca', 'BcaB08g36254' => 'bca', 'BcaC01g06519' => 'bca', 'BcaC02g11889' => 'bca', 'BcaC03g14010' => 'bca', 'BcaC03g18439' => 'bca', 'BcaC04g19765' => 'bca', 'BcaC09g48432' => 'bca', 'BcaNung07302' => 'bca', 'BolC2t06040H' => 'bol', 'BolC2t07346H' => 'bol', 'BolC3t13817H' => 'bol', 'BolC4t22625H' => 'bol', 'BolC4t23297H' => 'bol', 'BolC8t51278H' => 'bol', 'BolC9t58050H' => 'bol', 'BolC9t58051H' => 'bol', 'BolC9t60163H' => 'bol', 'BraA02t04712Z' => 'bra', 'BraA02t05791Z' => 'bra', 'BraA03t10483Z' => 'bra', 'BraA05t19795Z' => 'bra', 'BraA05t20276Z' => 'bra', 'BraA09t40827Z' => 'bra', 'BraA10t43750Z' => 'bra', 'BraA10t43751Z' => 'bra', 'BraA10t45370Z' => 'bra', 'C02p00400' => 'bna', 'C02p12460' => 'bna', 'C03p13680' => 'bna', 'C04p10270' => 'bna', 'C04p17500' => 'bna', 'C08p37010' => 'bna', 'C09p51880' => 'bna', 'C09p51890' => 'bna', 'C09p74300' => 'bna', 'CAN.G179.26' => 'can', 'CAN.G3384.1' => 'can', 'CAN.G394.68' => 'can', 'CAN.G907.13' => 'can', 'CANSAT11G0012' => 'cansat', 'CANSAT25G1586' => 'cansat', 'CANSAT35G0735' => 'cansat', 'CANSAT54G0556' => 'cansat', 'CANSAT64G0356' => 'cansat', 'CANSAT78G2042' => 'cansat', 'CARHR125920' => 'chi', 'CARHR131910' => 'chi', 'CARHR172390' => 'chi', 'CARHR211140' => 'chi', 'CARHR285850' => 'chi', 'CARHR285860' => 'chi', 'Carub.0004s1347' => 'cru', 'Carub.0004s1960' => 'cru', 'Carub.0005s2880' => 'cru', 'Carub.0006s0107' => 'cru', 'Carub.0008s2015' => 'cru', 'Carub.0008s2016' => 'cru', 'Carub.0008s2017' => 'cru', 'Ca_01315_v3' => 'car', 'Ca_05063_v3' => 'car', 'Ca_10231_v3' => 'car', 'Ca_10913_v3' => 'car', 'Ca_19156_v3' => 'car', 'Ca_23644_v3' => 'car', 'Ca_26735_v3' => 'car', 'Cc01_g13130' => 'ccan', 'Cc02_g21690' => 'ccan', 'Cc03_g03600' => 'ccan', 'Cc06_g02510' => 'ccan', 'CDE02G1265' => 'cde', 'CDE05G0415' => 'cde', 'CDE08G1082' => 'cde', 'Cfa005780' => 'cfa', 'Cfa011522' => 'cfa', 'Cfa011523' => 'cfa', 'Cfa015627' => 'cfa', 'Cfa017359' => 'cfa', 'Ciclev10005687m.g' => 'ccl', 'Ciclev10012173m.g' => 'ccl', 'Ciclev10021621m.g' => 'ccl', 'Ciclev10028968m.g' => 'ccl', 'Ciclev10029907m.g' => 'ccl', 'CiPaw.01G164800' => 'cil', 'CiPaw.07G083700' => 'cil', 'CiPaw.07G127000' => 'cil', 'CiPaw.07G136900' => 'cil', 'CiPaw.08G081700' => 'cil', 'CiPaw.09G194600' => 'cil', 'CiPaw.10G146500' => 'cil', 'CiPaw.13G091500' => 'cil', 'CiPaw.13G091600' => 'cil', 'ClCG00G003390' => 'cla', 'ClCG01G007220' => 'cla', 'ClCG03G001370' => 'cla', 'ClCG04G008100' => 'cla', 'ClCG06G006110' => 'cla', 'ClCG06G006130' => 'cla', 'ClCG10G021210' => 'cla', 'COL.COLO4_07648' => 'col', 'COL.COLO4_07650' => 'col', 'COL.COLO4_07651' => 'col', 'COL.COLO4_14780' => 'col', 'COL.COLO4_18546' => 'col', 'COL.COLO4_18547' => 'col', 'COL.COLO4_23103' => 'col', 'COL.COLO4_30419' => 'col', 'COL.COLO4_34232' => 'col', 'Cpa.g.sc169.20' => 'cpa', 'Cpa.g.sc57.45' => 'cpa', 'Cpa.g.sc58.124' => 'cpa', 'Cpa.g.sc58.125' => 'cpa', 'Cpa.g.sc81.118' => 'cpa', 'Cpa.g.sc81.119' => 'cpa', 'Cre12.g524700' => 'cre', 'CsaV3_1G034430' => 'csa', 'CsaV3_1G034440' => 'csa', 'CsaV3_1G034450' => 'csa', 'CsaV3_3G034830' => 'csa', 'CsaV3_4G025090' => 'csa', 'CsaV3_5G018660' => 'csa', 'CsaV3_6G038160' => 'csa', 'CSS0003447' => 'camsi', 'CSS0017840' => 'camsi', 'CSS0019260' => 'camsi', 'CSS0040375' => 'camsi', 'CSS0042533' => 'camsi', 'DCAR_005960' => 'dca', 'DCAR_012104' => 'dca', 'DCAR_012105' => 'dca', 'DCAR_012293' => 'dca', 'DCAR_015632' => 'dca', 'DCAR_024602' => 'dca', 'DCAR_028752' => 'dca', 'Dinv06261' => 'din', 'Dinv13982' => 'din', 'Dinv17029' => 'din', 'Dinv18463' => 'din', 'Dinv33181' => 'din', 'Dinv35585' => 'din', 'Dinv37161' => 'din', 'Dinv42977' => 'din', 'Dinv43122' => 'din', 'Dinv44517' => 'din', 'Duzib093G0256' => 'dzi', 'Duzib106G1254' => 'dzi', 'Duzib128G1789' => 'dzi', 'Duzib133G0633' => 'dzi', 'Duzib138G0510' => 'dzi', 'Duzib150G1084' => 'dzi', 'Duzib168G0488' => 'dzi', 'Duzib168G1523' => 'dzi', 'Duzib170G0133' => 'dzi', 'ECA234G1433' => 'eca', 'ECA236G1432' => 'eca', 'ECA236G2256' => 'eca', 'ECA236G2365' => 'eca', 'ECA236G4830' => 'eca', 'ECA248G1505' => 'eca', 'EL10Ac3g06431' => 'bvu', 'EL10Ac5g12577' => 'bvu', 'EL10Ac6g13533' => 'bvu', 'EL10Ac7g16045' => 'bvu', 'Eucgr.A01281' => 'egr', 'Eucgr.B02326' => 'egr', 'Eucgr.H03532' => 'egr', 'Eucgr.K00553' => 'egr', 'Eucgr.K03116' => 'egr', 'FAN02G3963' => 'fan', 'FAN05G0438' => 'fan', 'FAN09G2434' => 'fan', 'FAN12G3984' => 'fan', 'FAN14G0798' => 'fan', 'FAN17G0652' => 'fan', 'FAN19G1988' => 'fan', 'FAN22G0632' => 'fan', 'FAN23G0387' => 'fan', 'FAN26G1323' => 'fan', 'FAN28G0666' => 'fan', 'FvH4_1g26080' => 'fve', 'FvH4_3g36780' => 'fve', 'FvH4_4g15270' => 'fve', 'FvH4_6g13490' => 'fve', 'Glyma.01G098700' => 'gma', 'Glyma.03G065900' => 'gma', 'Glyma.03G073754' => 'gma', 'Glyma.03G073758' => 'gma', 'Glyma.03G083200' => 'gma', 'Glyma.03G225500' => 'gma', 'Glyma.05G037766' => 'gma', 'Glyma.07G133500' => 'gma', 'Glyma.10G139400' => 'gma', 'Glyma.10G248900' => 'gma', 'Glyma.11G137800' => 'gma', 'Glyma.12G061300' => 'gma', 'Glyma.13G337900' => 'gma', 'Glyma.15G036600' => 'gma', 'Glyma.18G182800' => 'gma', 'Glyma.19G222500' => 'gma', 'Glyma.20G144800' => 'gma', 'Gohir.A01G222000' => 'ghi', 'Gohir.A03G044000' => 'ghi', 'Gohir.A03G044100' => 'ghi', 'Gohir.A04G083100' => 'ghi', 'Gohir.A07G127200' => 'ghi', 'Gohir.A07G132400' => 'ghi', 'Gohir.A08G000700' => 'ghi', 'Gohir.A11G327300' => 'ghi', 'Gohir.D01G211500' => 'ghi', 'Gohir.D03G123400' => 'ghi', 'Gohir.D03G123500' => 'ghi', 'Gohir.D04G121800' => 'ghi', 'Gohir.D07G131500' => 'ghi', 'Gohir.D07G136600' => 'ghi', 'Gohir.D08G011600' => 'ghi', 'Gohir.D11G346200' => 'ghi', 'Gorai.001G142800' => 'gra', 'Gorai.001G148700' => 'gra', 'Gorai.002G257300' => 'gra', 'Gorai.003G130000' => 'gra', 'Gorai.003G130100' => 'gra', 'Gorai.004G005300' => 'gra', 'Gorai.007G376500' => 'gra', 'Gorai.012G104700' => 'gra', 'GSVIVG01017946001' => 'vvi', 'GSVIVG01024928001' => 'vvi', 'GSVIVG01028227001' => 'vvi', 'GSVIVG01034151001' => 'vvi', 'HanXRQChr05g0135031' => 'han', 'HanXRQChr05g0135041' => 'han', 'HanXRQChr05g0140021' => 'han', 'HanXRQChr06g0178981' => 'han', 'HanXRQChr07g0188251' => 'han', 'HanXRQChr08g0235311' => 'han', 'HanXRQChr09g0271011' => 'han', 'HanXRQChr10g0293321' => 'han', 'HanXRQChr13g0388171' => 'han', 'Haze_00916' => 'cav', 'Haze_05063' => 'cav', 'Haze_20814' => 'cav', 'Haze_24128' => 'cav', 'Hma1.2p1_0745F.1_g212010' => 'hma', 'Hma1.2p1_0757F.1_g213260' => 'hma', 'Hma1.2p1_0936F.1_g238840' => 'hma', 'Hma1.2p1_1735F.1_g299890' => 'hma', 'Hma1.2p1_1861F.1_g305685' => 'hma', 'HPP92_003397' => 'vpl', 'HPP92_012597' => 'vpl', 'HPP92_015520' => 'vpl', 'HPP92_015539' => 'vpl', 'HPP92_020373' => 'vpl', 'Hund04938' => 'sun', 'Hund10677' => 'sun', 'Hund11033' => 'sun', 'Hund12155' => 'sun', 'Lalb_Chr01g0022551' => 'lal', 'Lalb_Chr03g0042341' => 'lal', 'Lalb_Chr07g0192931' => 'lal', 'Lalb_Chr12g0209551' => 'lal', 'Lalb_Chr19g0125251' => 'lal', 'Lalb_Chr19g0137891' => 'lal', 'Lalb_Chr21g0304641' => 'lal', 'Lalb_Chr21g0309881' => 'lal', 'Lj1A5T12' => 'lonja', 'Lj1C148G10' => 'lonja', 'Lj2A93T83' => 'lonja', 'Lj3A738G68' => 'lonja', 'Lj3C966T1' => 'lonja', 'Lj3g0018958' => 'lja', 'Lj3g0021831' => 'lja', 'Lj3g0025443' => 'lja', 'Lj4g0026809' => 'lja', 'Lj5g0012558' => 'lja', 'Lj5g0021586' => 'lja', 'Lsat_1_v5_gn_5_156840' => 'lsa', 'Lsat_1_v5_gn_8_73460' => 'lsa', 'Lsat_1_v5_gn_8_73481' => 'lsa', 'Lsat_1_v5_gn_9_31601' => 'lsa', 'Lsat_1_v5_gn_9_77320' => 'lsa', 'Manes.01G171300' => 'mes', 'Manes.01G171400' => 'mes', 'Manes.01G236100' => 'mes', 'Manes.02G130500' => 'mes', 'Manes.02G130600' => 'mes', 'Manes.03G180200' => 'mes', 'Manes.05G007000' => 'mes', 'Manes.08G084400' => 'mes', 'Manes.09G092600' => 'mes', 'Manes.15G027900' => 'mes', 'MBI04_g40948_MAGBIO' => 'mbi', 'MBI14_g12123_MAGBIO' => 'mbi', 'MBI18_g28915_MAGBIO' => 'mbi', 'MCO09G053' => 'mco', 'MCO11G782' => 'mco', 'MCO15G215' => 'mco', 'MD03G1088500' => 'mdo', 'MD03G1088600' => 'mdo', 'MD04G1130800' => 'mdo', 'MD09G1291700' => 'mdo', 'MD11G1097500' => 'mdo', 'MD11G1097600' => 'mdo', 'MD12G1143900' => 'mdo', 'MD13G1191400' => 'mdo', 'MD16G1191500' => 'mdo', 'Medtr1g085570' => 'mtr', 'Medtr1g104610' => 'mtr', 'Medtr2g097520' => 'mtr', 'Medtr4g021800' => 'mtr', 'Medtr4g021825' => 'mtr', 'Medtr4g064270' => 'mtr', 'Medtr4g064380' => 'mtr', 'Medtr7g062150' => 'mtr', 'MELO3C003138.2' => 'cme', 'MELO3C005187.2' => 'cme', 'MELO3C009252.2' => 'cme', 'MELO3C014481.2' => 'cme', 'MELO3C020616.2' => 'cme', 'MELO3C020617.2' => 'cme', 'MELO3C020618.2' => 'cme', 'Migut.G00328' => 'egut', 'Migut.J00320' => 'egut', 'Migut.L01000' => 'egut', 'Migut.L01953' => 'egut', 'MSTRG.10253' => 'ama', 'MSTRG.19077' => 'ama', 'MSTRG.26780' => 'ama', 'MSTRG.4023' => 'ama', 'MSTRG.5655' => 'ama', 'MSTRG.9992' => 'ama', 'Nitab4.5_0000043g0310' => 'nta', 'Nitab4.5_0000463g0080' => 'nta', 'Nitab4.5_0000705g0170' => 'nta', 'Nitab4.5_0001326g0060' => 'nta', 'Nitab4.5_0001628g0030' => 'nta', 'Nitab4.5_0002103g0110' => 'nta', 'Nitab4.5_0002946g0030' => 'nta', 'Nitab4.5_0004639g0030' => 'nta', 'Nn2g11149' => 'nnu', 'Nn2g13389' => 'nnu', 'Nn4g25326' => 'nnu', 'Nn4g26290' => 'nnu', 'Nn5g29865' => 'nnu', 'Oeu004163.1' => 'oeu', 'Oeu006901.1' => 'oeu', 'Oeu010096.1' => 'oeu', 'Oeu024340.1' => 'oeu', 'Oeu048369.1' => 'oeu', 'Os01g0973000' => 'osa', 'Os03g0273800' => 'osa', 'Os03g0701200' => 'osa', 'Os03g0834050' => 'osa', 'Os07g0634400' => 'osa', 'Peaxi162Scf00092g01414' => 'pax', 'Peaxi162Scf00165g00818' => 'pax', 'Peaxi162Scf00309g00516' => 'pax', 'Peaxi162Scf00774g00218' => 'pax', 'PGR004G1824' => 'pgr', 'PGR004G2606' => 'pgr', 'PGR031G2716' => 'pgr', 'PGR102G2460' => 'pgr', 'PGR142G2599' => 'pgr', 'PGSC0003DMG400000843' => 'stu', 'PGSC0003DMG400008829' => 'stu', 'PGSC0003DMG400030418' => 'stu', 'PGSC0003DMG400031834' => 'stu', 'PGSC0003DMG401028300' => 'stu', 'PGSC0003DMG402028300' => 'stu', 'Phvul.001G219300' => 'pvu', 'Phvul.007G056000' => 'pvu', 'Phvul.007G208000' => 'pvu', 'Phvul.008G119500' => 'pvu', 'Phvul.010G011200' => 'pvu', 'Phvul.010G014800' => 'pvu', 'Phvul.011G062900' => 'pvu', 'Phvul.L007043' => 'pvu', 'Potri.001G242300' => 'ptr', 'Potri.002G185300' => 'ptr', 'Potri.006G086900' => 'ptr', 'Potri.008G151700' => 'ptr', 'Potri.009G033500' => 'ptr', 'Potri.010G089300' => 'ptr', 'Potri.014G110800' => 'ptr', 'Pp3c27_8130' => 'ppa', 'Pp3c6_27410' => 'ppa', 'PRCOL_00001659' => 'pco', 'PRCOL_00001927' => 'pco', 'PRCOL_00003649' => 'pco', 'Prupe.1G011600' => 'ppe', 'Prupe.3G000800' => 'ppe', 'Prupe.3G001100' => 'ppe', 'Prupe.6G072700' => 'ppe', 'Prupe.6G072800' => 'ppe', 'Prupe.6G257300' => 'ppe', 'Prupe.8G033000' => 'ppe', 'Psat0s2633g0080' => 'psa', 'Psat0s3396g0080' => 'psa', 'Psat0s3396g0200' => 'psa', 'Psat3g139080' => 'psa', 'Psat5g285080' => 'psa', 'Psat6g157760' => 'psa', 'Psat6g208440' => 'psa', 'Psat7g215320' => 'psa', 'Psat7g215400' => 'psa', 'Psat7g235600' => 'psa', 'Psat7g235760' => 'psa', 'PSO063G4603' => 'pso', 'PSO210G0182' => 'pso', 'PSO210G0196' => 'pso', 'PSO339G0394' => 'pso', 'PSO339G4127' => 'pso', 'PSO513G0064' => 'pso', 'PSO761G0079' => 'pso', 'QL01p031003' => 'qlo', 'QL01p031078' => 'qlo', 'QL06p003004' => 'qlo', 'QL07p048731' => 'qlo', 'QL09p037427' => 'qlo', 'RcHm_v2.0_Chr3g0466361' => 'rch', 'RcHm_v2.0_Chr3g0485571' => 'rch', 'RcHm_v2.0_Chr4g0416551' => 'rch', 'RcHm_v2.0_Chr5g0065831' => 'rch', 'Rhsim01G0230500' => 'rsi', 'Rhsim05G0194000' => 'rsi', 'Rhsim08G0250400' => 'rsi', 'Sabra02G0131000' => 'sbr', 'Sabra06G0066300' => 'sbr', 'Sabra08G0115500' => 'sbr', 'Sabra09G0023900' => 'sbr', 'Sabra10G0054000' => 'sbr', 'Sabra14G0081500' => 'sbr', 'Sabra16G0147100' => 'sbr', 'SalBow2G2957' => 'sbo', 'SalBow4G3320' => 'sbo', 'SalBow8G1894' => 'sbo', 'Sc07g0007950' => 'sci', 'Sc12g0001360' => 'sci', 'Sc13g0004330' => 'sci', 'Sc20g0005010' => 'sci', 'Sed0000361' => 'sed', 'Sed0001706' => 'sed', 'Sed0002422' => 'sed', 'Sed0004029' => 'sed', 'Sed0004602' => 'sed', 'Sed0004943' => 'sed', 'Sed0008646' => 'sed', 'Sed0023313' => 'sed', 'Sed0024843' => 'sed', 'SEGI_00081' => 'sgi', 'SEGI_00947' => 'sgi', 'SEGI_04046' => 'sgi', 'SEGI_06880' => 'sgi', 'SEGI_09736' => 'sgi', 'SEGI_12741' => 'sgi', 'SEGI_14530' => 'sgi', 'SEGI_20705' => 'sgi', 'SEGI_26088' => 'sgi', 'SEGI_28323' => 'sgi', 'SEGI_33343' => 'sgi', 'SGA_v2.0_scaffold126G33775' => 'sas', 'SGA_v2.0_scaffold2G01337' => 'sas', 'SGA_v2.0_scaffold38G15006' => 'sas', 'SGA_v2.0_scaffold39G15264' => 'sas', 'SGA_v2.0_scaffold453G51880' => 'sas', 'SHI12696' => 'shi', 'SMO367G1096' => 'smo', 'Solyc01g068630.3' => 'sly', 'Solyc05g011880.3' => 'sly', 'Solyc06g076300.3' => 'sly', 'Solyc09g010940.4' => 'sly', 'Solyc09g075890.3' => 'sly', 'Sopen01g030560' => 'spe', 'Sopen05g006630' => 'spe', 'Sopen06g032720' => 'spe', 'Sopen09g005660' => 'spe', 'Sopen09g030690' => 'spe', 'Sp4g14540' => 'spa', 'Sp4g20030' => 'spa', 'Sp5g01320' => 'spa', 'Sp6g21170' => 'spa', 'Sp6g21180' => 'spa', 'Sp6g21190' => 'spa', 'Sp6g40220' => 'spa', 'TAR362G0122' => 'tar', 'TAR362G1338' => 'tar', 'TAR369G0590' => 'tar', 'TAR371G0824' => 'tar', 'TAR622G1429' => 'tar', 'TAR623G0734' => 'tar', 'TAR625G0441' => 'tar', 'TAR629G0976' => 'tar', 'TAR633G1195' => 'tar', 'TAR636G2660' => 'tar', 'THA.LOC104799440' => 'tha', 'THA.LOC104800966' => 'tha', 'THA.LOC104806559' => 'tha', 'THA.LOC104810765' => 'tha', 'THA.LOC104816266' => 'tha', 'THA.LOC104817419' => 'tha', 'THA.LOC104827021' => 'tha', 'Thecc.01G327400' => 'tca', 'Thecc.04G229200' => 'tca', 'Thecc.05G037400' => 'tca', 'Thecc.09G318600' => 'tca', 'Thecc.09G318700' => 'tca', 'Thhalv10006238m.g' => 'esa', 'Thhalv10014321m.g' => 'esa', 'Thhalv10014335m.g' => 'esa', 'Thhalv10015826m.g' => 'esa', 'Thhalv10017107m.g' => 'esa', 'Thhalv10017180m.g' => 'esa', 'Thhalv10029339m.g' => 'esa', 'TPR.G1699' => 'tpr', 'TPR.G23609' => 'tpr', 'TPR.G3081' => 'tpr', 'TPR.G40397' => 'tpr', 'TPR.G5522' => 'tpr', 'TPR.G5618' => 'tpr', 'TPR.G5626' => 'tpr', 'TWI09G1632' => 'twi', 'TWI23G1230' => 'twi', 'TWI53G1064' => 'twi', 'TWI59G0751' => 'twi', 'TWI74G0947' => 'twi', 'TWI77G0337' => 'twi', 'TWI79G1254' => 'twi', 'unitig_0.g2341' => 'ugi', 'unitig_26.g10006' => 'ugi', 'unitig_26.g10008' => 'ugi', 'unitig_26.g9192' => 'ugi', 'vmacro14547' => 'vma', 'vmacro15333' => 'vma', 'vmacro18743' => 'vma', 'vmacro20166' => 'vma', 'VMungo0331G0523' => 'vmu', 'VMungo0331G1202' => 'vmu', 'VMungo0720G1228' => 'vmu', 'VMungo0720G1514' => 'vmu', 'VMungo1080G0169' => 'vmu', 'VMungo1127G1475' => 'vmu', 'VMungo1383G1208' => 'vmu', 'VMungo1383G1698' => 'vmu', 'Zm00001eb012270' => 'zma', 'Zm00001eb054100' => 'zma', 'Zm00001eb063350' => 'zma', 'Zm00001eb328560' => 'zma', 'Zm00001eb342820' => 'zma', 'Zm00001eb362210' => 'zma', 'Zm00001eb397730' => 'zma', 'Zm00001eb399750' => 'zma' ) $gf_id = 'HOM05D000959' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000959' ) $data_identifier = 'HOM05D000959' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 5, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 5, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 10, 'mbi' => (int) 3, 'mco' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 2, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 3, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 11, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399750' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000959', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '622', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p07100' => 'bna', 'A03p11720' => 'bna', 'A05p08300' => 'bna', 'A05p13380' => 'bna', 'A09p54130' => 'bna', 'A10p16690' => 'bna', 'A10p16700' => 'bna', 'A10p33390' => 'bna', 'Aa31LG10G16020' => 'aar', 'Aa31LG1G11810' => 'aar', 'Aa31LG1G11830' => 'aar', 'Aa31LG1G22510' => 'aar', 'Aa31LG5G4890' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5793' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2310' => 'aag', 'Actinidia08499' => 'ach', 'Actinidia11262' => 'ach', 'Actinidia23926' => 'ach', 'Actinidia34420' => 'ach', 'Actinidia36970' => 'ach', 'Ah.02g111220' => 'amhyb', 'Ah.15g097750' => 'amhyb', 'AL4G27500' => 'aly', 'AL6G11470' => 'aly', 'AL8G35950' => 'aly', 'AL8G35960' => 'aly', 'AL8G35970' => 'aly', 'Aqoxy1G00912' => 'aox', 'Aqoxy2G02253' => 'aox', 'Aqoxy2G02411' => 'aox', 'Aqoxy5G00485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BZ66YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K8ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM4FUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6BF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HFV7XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25JBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0YNNV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MAKK6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P70IT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP2Z6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V61LZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YWP64R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3S9AI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7PGHH' => 'arhy', 'AT2G32150' => 'ath', 'AT3G62040' => 'ath', 'AT5G02230' => 'ath', 'AT5G59480' => 'ath', 'AT5G59490' => 'ath', 'ATR0332G060' => 'atr', 'ATR0559G190' => 'atr', 'ATR0693G294' => 'atr', 'Atru.chr3.3975' => 'acertr', 'Atru.chr3.3976' => 'acertr', 'Atru.chr3.3977' => 'acertr', 'Atru.chr4.2498' => 'acertr', 'Atru.chr5.838' => 'acertr', 'Atru.chr8.1990' => 'acertr', 'Atru.chr8.1991' => 'acertr', 'Atru.chr8.1992' => 'acertr', 'AUR62001759' => 'cqu', 'AUR62009545' => 'cqu', 'AUR62010474' => 'cqu', 'AUR62025820' => 'cqu', 'AUR62030422' => 'cqu', 'AUR62033605' => 'cqu', 'AUR62038615' => 'cqu', 'AUR62041347' => 'cqu', 'BcaB01g04574' => 'bca', 'BcaB02g09263' => 'bca', 'BcaB02g10453' => 'bca', 'BcaB05g22513' => 'bca', 'BcaB08g36253' => 'bca', 'BcaB08g36254' => 'bca', 'BcaC01g06519' => 'bca', 'BcaC02g11889' => 'bca', 'BcaC03g14010' => 'bca', 'BcaC03g18439' => 'bca', 'BcaC04g19765' => 'bca', 'BcaC09g48432' => 'bca', 'BcaNung07302' => 'bca', 'BolC2t06040H' => 'bol', 'BolC2t07346H' => 'bol', 'BolC3t13817H' => 'bol', 'BolC4t22625H' => 'bol', 'BolC4t23297H' => 'bol', 'BolC8t51278H' => 'bol', 'BolC9t58050H' => 'bol', 'BolC9t58051H' => 'bol', 'BolC9t60163H' => 'bol', 'BraA02t04712Z' => 'bra', 'BraA02t05791Z' => 'bra', 'BraA03t10483Z' => 'bra', 'BraA05t19795Z' => 'bra', 'BraA05t20276Z' => 'bra', 'BraA09t40827Z' => 'bra', 'BraA10t43750Z' => 'bra', 'BraA10t43751Z' => 'bra', 'BraA10t45370Z' => 'bra', 'C02p00400' => 'bna', 'C02p12460' => 'bna', 'C03p13680' => 'bna', 'C04p10270' => 'bna', 'C04p17500' => 'bna', 'C08p37010' => 'bna', 'C09p51880' => 'bna', 'C09p51890' => 'bna', 'C09p74300' => 'bna', 'CAN.G179.26' => 'can', 'CAN.G3384.1' => 'can', 'CAN.G394.68' => 'can', 'CAN.G907.13' => 'can', 'CANSAT11G0012' => 'cansat', 'CANSAT25G1586' => 'cansat', 'CANSAT35G0735' => 'cansat', 'CANSAT54G0556' => 'cansat', 'CANSAT64G0356' => 'cansat', 'CANSAT78G2042' => 'cansat', 'CARHR125920' => 'chi', 'CARHR131910' => 'chi', 'CARHR172390' => 'chi', 'CARHR211140' => 'chi', 'CARHR285850' => 'chi', 'CARHR285860' => 'chi', 'Carub.0004s1347' => 'cru', 'Carub.0004s1960' => 'cru', 'Carub.0005s2880' => 'cru', 'Carub.0006s0107' => 'cru', 'Carub.0008s2015' => 'cru', 'Carub.0008s2016' => 'cru', 'Carub.0008s2017' => 'cru', 'Ca_01315_v3' => 'car', 'Ca_05063_v3' => 'car', 'Ca_10231_v3' => 'car', 'Ca_10913_v3' => 'car', 'Ca_19156_v3' => 'car', 'Ca_23644_v3' => 'car', 'Ca_26735_v3' => 'car', 'Cc01_g13130' => 'ccan', 'Cc02_g21690' => 'ccan', 'Cc03_g03600' => 'ccan', 'Cc06_g02510' => 'ccan', 'CDE02G1265' => 'cde', 'CDE05G0415' => 'cde', 'CDE08G1082' => 'cde', 'Cfa005780' => 'cfa', 'Cfa011522' => 'cfa', 'Cfa011523' => 'cfa', 'Cfa015627' => 'cfa', 'Cfa017359' => 'cfa', 'Ciclev10005687m.g' => 'ccl', 'Ciclev10012173m.g' => 'ccl', 'Ciclev10021621m.g' => 'ccl', 'Ciclev10028968m.g' => 'ccl', 'Ciclev10029907m.g' => 'ccl', 'CiPaw.01G164800' => 'cil', 'CiPaw.07G083700' => 'cil', 'CiPaw.07G127000' => 'cil', 'CiPaw.07G136900' => 'cil', 'CiPaw.08G081700' => 'cil', 'CiPaw.09G194600' => 'cil', 'CiPaw.10G146500' => 'cil', 'CiPaw.13G091500' => 'cil', 'CiPaw.13G091600' => 'cil', 'ClCG00G003390' => 'cla', 'ClCG01G007220' => 'cla', 'ClCG03G001370' => 'cla', 'ClCG04G008100' => 'cla', 'ClCG06G006110' => 'cla', 'ClCG06G006130' => 'cla', 'ClCG10G021210' => 'cla', 'COL.COLO4_07648' => 'col', 'COL.COLO4_07650' => 'col', 'COL.COLO4_07651' => 'col', 'COL.COLO4_14780' => 'col', 'COL.COLO4_18546' => 'col', 'COL.COLO4_18547' => 'col', 'COL.COLO4_23103' => 'col', 'COL.COLO4_30419' => 'col', 'COL.COLO4_34232' => 'col', 'Cpa.g.sc169.20' => 'cpa', 'Cpa.g.sc57.45' => 'cpa', 'Cpa.g.sc58.124' => 'cpa', 'Cpa.g.sc58.125' => 'cpa', 'Cpa.g.sc81.118' => 'cpa', 'Cpa.g.sc81.119' => 'cpa', 'Cre12.g524700' => 'cre', 'CsaV3_1G034430' => 'csa', 'CsaV3_1G034440' => 'csa', 'CsaV3_1G034450' => 'csa', 'CsaV3_3G034830' => 'csa', 'CsaV3_4G025090' => 'csa', 'CsaV3_5G018660' => 'csa', 'CsaV3_6G038160' => 'csa', 'CSS0003447' => 'camsi', 'CSS0017840' => 'camsi', 'CSS0019260' => 'camsi', 'CSS0040375' => 'camsi', 'CSS0042533' => 'camsi', 'DCAR_005960' => 'dca', 'DCAR_012104' => 'dca', 'DCAR_012105' => 'dca', 'DCAR_012293' => 'dca', 'DCAR_015632' => 'dca', 'DCAR_024602' => 'dca', 'DCAR_028752' => 'dca', 'Dinv06261' => 'din', 'Dinv13982' => 'din', 'Dinv17029' => 'din', 'Dinv18463' => 'din', 'Dinv33181' => 'din', 'Dinv35585' => 'din', 'Dinv37161' => 'din', 'Dinv42977' => 'din', 'Dinv43122' => 'din', 'Dinv44517' => 'din', 'Duzib093G0256' => 'dzi', 'Duzib106G1254' => 'dzi', 'Duzib128G1789' => 'dzi', 'Duzib133G0633' => 'dzi', 'Duzib138G0510' => 'dzi', 'Duzib150G1084' => 'dzi', 'Duzib168G0488' => 'dzi', 'Duzib168G1523' => 'dzi', 'Duzib170G0133' => 'dzi', 'ECA234G1433' => 'eca', 'ECA236G1432' => 'eca', 'ECA236G2256' => 'eca', 'ECA236G2365' => 'eca', 'ECA236G4830' => 'eca', 'ECA248G1505' => 'eca', 'EL10Ac3g06431' => 'bvu', 'EL10Ac5g12577' => 'bvu', 'EL10Ac6g13533' => 'bvu', 'EL10Ac7g16045' => 'bvu', 'Eucgr.A01281' => 'egr', 'Eucgr.B02326' => 'egr', 'Eucgr.H03532' => 'egr', 'Eucgr.K00553' => 'egr', 'Eucgr.K03116' => 'egr', 'FAN02G3963' => 'fan', 'FAN05G0438' => 'fan', 'FAN09G2434' => 'fan', 'FAN12G3984' => 'fan', 'FAN14G0798' => 'fan', 'FAN17G0652' => 'fan', 'FAN19G1988' => 'fan', 'FAN22G0632' => 'fan', 'FAN23G0387' => 'fan', 'FAN26G1323' => 'fan', 'FAN28G0666' => 'fan', 'FvH4_1g26080' => 'fve', 'FvH4_3g36780' => 'fve', 'FvH4_4g15270' => 'fve', 'FvH4_6g13490' => 'fve', 'Glyma.01G098700' => 'gma', 'Glyma.03G065900' => 'gma', 'Glyma.03G073754' => 'gma', 'Glyma.03G073758' => 'gma', 'Glyma.03G083200' => 'gma', 'Glyma.03G225500' => 'gma', 'Glyma.05G037766' => 'gma', 'Glyma.07G133500' => 'gma', 'Glyma.10G139400' => 'gma', 'Glyma.10G248900' => 'gma', 'Glyma.11G137800' => 'gma', 'Glyma.12G061300' => 'gma', 'Glyma.13G337900' => 'gma', 'Glyma.15G036600' => 'gma', 'Glyma.18G182800' => 'gma', 'Glyma.19G222500' => 'gma', 'Glyma.20G144800' => 'gma', 'Gohir.A01G222000' => 'ghi', 'Gohir.A03G044000' => 'ghi', 'Gohir.A03G044100' => 'ghi', 'Gohir.A04G083100' => 'ghi', 'Gohir.A07G127200' => 'ghi', 'Gohir.A07G132400' => 'ghi', 'Gohir.A08G000700' => 'ghi', 'Gohir.A11G327300' => 'ghi', 'Gohir.D01G211500' => 'ghi', 'Gohir.D03G123400' => 'ghi', 'Gohir.D03G123500' => 'ghi', 'Gohir.D04G121800' => 'ghi', 'Gohir.D07G131500' => 'ghi', 'Gohir.D07G136600' => 'ghi', 'Gohir.D08G011600' => 'ghi', 'Gohir.D11G346200' => 'ghi', 'Gorai.001G142800' => 'gra', 'Gorai.001G148700' => 'gra', 'Gorai.002G257300' => 'gra', 'Gorai.003G130000' => 'gra', 'Gorai.003G130100' => 'gra', 'Gorai.004G005300' => 'gra', 'Gorai.007G376500' => 'gra', 'Gorai.012G104700' => 'gra', 'GSVIVG01017946001' => 'vvi', 'GSVIVG01024928001' => 'vvi', 'GSVIVG01028227001' => 'vvi', 'GSVIVG01034151001' => 'vvi', 'HanXRQChr05g0135031' => 'han', 'HanXRQChr05g0135041' => 'han', 'HanXRQChr05g0140021' => 'han', 'HanXRQChr06g0178981' => 'han', 'HanXRQChr07g0188251' => 'han', 'HanXRQChr08g0235311' => 'han', 'HanXRQChr09g0271011' => 'han', 'HanXRQChr10g0293321' => 'han', 'HanXRQChr13g0388171' => 'han', 'Haze_00916' => 'cav', 'Haze_05063' => 'cav', 'Haze_20814' => 'cav', 'Haze_24128' => 'cav', 'Hma1.2p1_0745F.1_g212010' => 'hma', 'Hma1.2p1_0757F.1_g213260' => 'hma', 'Hma1.2p1_0936F.1_g238840' => 'hma', 'Hma1.2p1_1735F.1_g299890' => 'hma', 'Hma1.2p1_1861F.1_g305685' => 'hma', 'HPP92_003397' => 'vpl', 'HPP92_012597' => 'vpl', 'HPP92_015520' => 'vpl', 'HPP92_015539' => 'vpl', 'HPP92_020373' => 'vpl', 'Hund04938' => 'sun', 'Hund10677' => 'sun', 'Hund11033' => 'sun', 'Hund12155' => 'sun', 'Lalb_Chr01g0022551' => 'lal', 'Lalb_Chr03g0042341' => 'lal', 'Lalb_Chr07g0192931' => 'lal', 'Lalb_Chr12g0209551' => 'lal', 'Lalb_Chr19g0125251' => 'lal', 'Lalb_Chr19g0137891' => 'lal', 'Lalb_Chr21g0304641' => 'lal', 'Lalb_Chr21g0309881' => 'lal', 'Lj1A5T12' => 'lonja', 'Lj1C148G10' => 'lonja', 'Lj2A93T83' => 'lonja', 'Lj3A738G68' => 'lonja', 'Lj3C966T1' => 'lonja', 'Lj3g0018958' => 'lja', 'Lj3g0021831' => 'lja', 'Lj3g0025443' => 'lja', 'Lj4g0026809' => 'lja', 'Lj5g0012558' => 'lja', 'Lj5g0021586' => 'lja', 'Lsat_1_v5_gn_5_156840' => 'lsa', 'Lsat_1_v5_gn_8_73460' => 'lsa', 'Lsat_1_v5_gn_8_73481' => 'lsa', 'Lsat_1_v5_gn_9_31601' => 'lsa', 'Lsat_1_v5_gn_9_77320' => 'lsa', 'Manes.01G171300' => 'mes', 'Manes.01G171400' => 'mes', 'Manes.01G236100' => 'mes', 'Manes.02G130500' => 'mes', 'Manes.02G130600' => 'mes', 'Manes.03G180200' => 'mes', 'Manes.05G007000' => 'mes', 'Manes.08G084400' => 'mes', 'Manes.09G092600' => 'mes', 'Manes.15G027900' => 'mes', 'MBI04_g40948_MAGBIO' => 'mbi', 'MBI14_g12123_MAGBIO' => 'mbi', 'MBI18_g28915_MAGBIO' => 'mbi', 'MCO09G053' => 'mco', 'MCO11G782' => 'mco', 'MCO15G215' => 'mco', 'MD03G1088500' => 'mdo', 'MD03G1088600' => 'mdo', 'MD04G1130800' => 'mdo', 'MD09G1291700' => 'mdo', 'MD11G1097500' => 'mdo', 'MD11G1097600' => 'mdo', 'MD12G1143900' => 'mdo', 'MD13G1191400' => 'mdo', 'MD16G1191500' => 'mdo', 'Medtr1g085570' => 'mtr', 'Medtr1g104610' => 'mtr', 'Medtr2g097520' => 'mtr', 'Medtr4g021800' => 'mtr', 'Medtr4g021825' => 'mtr', 'Medtr4g064270' => 'mtr', 'Medtr4g064380' => 'mtr', 'Medtr7g062150' => 'mtr', 'MELO3C003138.2' => 'cme', 'MELO3C005187.2' => 'cme', 'MELO3C009252.2' => 'cme', 'MELO3C014481.2' => 'cme', 'MELO3C020616.2' => 'cme', 'MELO3C020617.2' => 'cme', 'MELO3C020618.2' => 'cme', 'Migut.G00328' => 'egut', 'Migut.J00320' => 'egut', 'Migut.L01000' => 'egut', 'Migut.L01953' => 'egut', 'MSTRG.10253' => 'ama', 'MSTRG.19077' => 'ama', 'MSTRG.26780' => 'ama', 'MSTRG.4023' => 'ama', 'MSTRG.5655' => 'ama', 'MSTRG.9992' => 'ama', 'Nitab4.5_0000043g0310' => 'nta', 'Nitab4.5_0000463g0080' => 'nta', 'Nitab4.5_0000705g0170' => 'nta', 'Nitab4.5_0001326g0060' => 'nta', 'Nitab4.5_0001628g0030' => 'nta', 'Nitab4.5_0002103g0110' => 'nta', 'Nitab4.5_0002946g0030' => 'nta', 'Nitab4.5_0004639g0030' => 'nta', 'Nn2g11149' => 'nnu', 'Nn2g13389' => 'nnu', 'Nn4g25326' => 'nnu', 'Nn4g26290' => 'nnu', 'Nn5g29865' => 'nnu', 'Oeu004163.1' => 'oeu', 'Oeu006901.1' => 'oeu', 'Oeu010096.1' => 'oeu', 'Oeu024340.1' => 'oeu', 'Oeu048369.1' => 'oeu', 'Os01g0973000' => 'osa', 'Os03g0273800' => 'osa', 'Os03g0701200' => 'osa', 'Os03g0834050' => 'osa', 'Os07g0634400' => 'osa', 'Peaxi162Scf00092g01414' => 'pax', 'Peaxi162Scf00165g00818' => 'pax', 'Peaxi162Scf00309g00516' => 'pax', 'Peaxi162Scf00774g00218' => 'pax', 'PGR004G1824' => 'pgr', 'PGR004G2606' => 'pgr', 'PGR031G2716' => 'pgr', 'PGR102G2460' => 'pgr', 'PGR142G2599' => 'pgr', 'PGSC0003DMG400000843' => 'stu', 'PGSC0003DMG400008829' => 'stu', 'PGSC0003DMG400030418' => 'stu', 'PGSC0003DMG400031834' => 'stu', 'PGSC0003DMG401028300' => 'stu', 'PGSC0003DMG402028300' => 'stu', 'Phvul.001G219300' => 'pvu', 'Phvul.007G056000' => 'pvu', 'Phvul.007G208000' => 'pvu', 'Phvul.008G119500' => 'pvu', 'Phvul.010G011200' => 'pvu', 'Phvul.010G014800' => 'pvu', 'Phvul.011G062900' => 'pvu', 'Phvul.L007043' => 'pvu', 'Potri.001G242300' => 'ptr', 'Potri.002G185300' => 'ptr', 'Potri.006G086900' => 'ptr', 'Potri.008G151700' => 'ptr', 'Potri.009G033500' => 'ptr', 'Potri.010G089300' => 'ptr', 'Potri.014G110800' => 'ptr', 'Pp3c27_8130' => 'ppa', 'Pp3c6_27410' => 'ppa', 'PRCOL_00001659' => 'pco', 'PRCOL_00001927' => 'pco', 'PRCOL_00003649' => 'pco', 'Prupe.1G011600' => 'ppe', 'Prupe.3G000800' => 'ppe', 'Prupe.3G001100' => 'ppe', 'Prupe.6G072700' => 'ppe', 'Prupe.6G072800' => 'ppe', 'Prupe.6G257300' => 'ppe', 'Prupe.8G033000' => 'ppe', 'Psat0s2633g0080' => 'psa', 'Psat0s3396g0080' => 'psa', 'Psat0s3396g0200' => 'psa', 'Psat3g139080' => 'psa', 'Psat5g285080' => 'psa', 'Psat6g157760' => 'psa', 'Psat6g208440' => 'psa', 'Psat7g215320' => 'psa', 'Psat7g215400' => 'psa', 'Psat7g235600' => 'psa', 'Psat7g235760' => 'psa', 'PSO063G4603' => 'pso', 'PSO210G0182' => 'pso', 'PSO210G0196' => 'pso', 'PSO339G0394' => 'pso', 'PSO339G4127' => 'pso', 'PSO513G0064' => 'pso', 'PSO761G0079' => 'pso', 'QL01p031003' => 'qlo', 'QL01p031078' => 'qlo', 'QL06p003004' => 'qlo', 'QL07p048731' => 'qlo', 'QL09p037427' => 'qlo', 'RcHm_v2.0_Chr3g0466361' => 'rch', 'RcHm_v2.0_Chr3g0485571' => 'rch', 'RcHm_v2.0_Chr4g0416551' => 'rch', 'RcHm_v2.0_Chr5g0065831' => 'rch', 'Rhsim01G0230500' => 'rsi', 'Rhsim05G0194000' => 'rsi', 'Rhsim08G0250400' => 'rsi', 'Sabra02G0131000' => 'sbr', 'Sabra06G0066300' => 'sbr', 'Sabra08G0115500' => 'sbr', 'Sabra09G0023900' => 'sbr', 'Sabra10G0054000' => 'sbr', 'Sabra14G0081500' => 'sbr', 'Sabra16G0147100' => 'sbr', 'SalBow2G2957' => 'sbo', 'SalBow4G3320' => 'sbo', 'SalBow8G1894' => 'sbo', 'Sc07g0007950' => 'sci', 'Sc12g0001360' => 'sci', 'Sc13g0004330' => 'sci', 'Sc20g0005010' => 'sci', 'Sed0000361' => 'sed', 'Sed0001706' => 'sed', 'Sed0002422' => 'sed', 'Sed0004029' => 'sed', 'Sed0004602' => 'sed', 'Sed0004943' => 'sed', 'Sed0008646' => 'sed', 'Sed0023313' => 'sed', 'Sed0024843' => 'sed', 'SEGI_00081' => 'sgi', 'SEGI_00947' => 'sgi', 'SEGI_04046' => 'sgi', 'SEGI_06880' => 'sgi', 'SEGI_09736' => 'sgi', 'SEGI_12741' => 'sgi', 'SEGI_14530' => 'sgi', 'SEGI_20705' => 'sgi', 'SEGI_26088' => 'sgi', 'SEGI_28323' => 'sgi', 'SEGI_33343' => 'sgi', 'SGA_v2.0_scaffold126G33775' => 'sas', 'SGA_v2.0_scaffold2G01337' => 'sas', 'SGA_v2.0_scaffold38G15006' => 'sas', 'SGA_v2.0_scaffold39G15264' => 'sas', 'SGA_v2.0_scaffold453G51880' => 'sas', 'SHI12696' => 'shi', 'SMO367G1096' => 'smo', 'Solyc01g068630.3' => 'sly', 'Solyc05g011880.3' => 'sly', 'Solyc06g076300.3' => 'sly', 'Solyc09g010940.4' => 'sly', 'Solyc09g075890.3' => 'sly', 'Sopen01g030560' => 'spe', 'Sopen05g006630' => 'spe', 'Sopen06g032720' => 'spe', 'Sopen09g005660' => 'spe', 'Sopen09g030690' => 'spe', 'Sp4g14540' => 'spa', 'Sp4g20030' => 'spa', 'Sp5g01320' => 'spa', 'Sp6g21170' => 'spa', 'Sp6g21180' => 'spa', 'Sp6g21190' => 'spa', 'Sp6g40220' => 'spa', 'TAR362G0122' => 'tar', 'TAR362G1338' => 'tar', 'TAR369G0590' => 'tar', 'TAR371G0824' => 'tar', 'TAR622G1429' => 'tar', 'TAR623G0734' => 'tar', 'TAR625G0441' => 'tar', 'TAR629G0976' => 'tar', 'TAR633G1195' => 'tar', 'TAR636G2660' => 'tar', 'THA.LOC104799440' => 'tha', 'THA.LOC104800966' => 'tha', 'THA.LOC104806559' => 'tha', 'THA.LOC104810765' => 'tha', 'THA.LOC104816266' => 'tha', 'THA.LOC104817419' => 'tha', 'THA.LOC104827021' => 'tha', 'Thecc.01G327400' => 'tca', 'Thecc.04G229200' => 'tca', 'Thecc.05G037400' => 'tca', 'Thecc.09G318600' => 'tca', 'Thecc.09G318700' => 'tca', 'Thhalv10006238m.g' => 'esa', 'Thhalv10014321m.g' => 'esa', 'Thhalv10014335m.g' => 'esa', 'Thhalv10015826m.g' => 'esa', 'Thhalv10017107m.g' => 'esa', 'Thhalv10017180m.g' => 'esa', 'Thhalv10029339m.g' => 'esa', 'TPR.G1699' => 'tpr', 'TPR.G23609' => 'tpr', 'TPR.G3081' => 'tpr', 'TPR.G40397' => 'tpr', 'TPR.G5522' => 'tpr', 'TPR.G5618' => 'tpr', 'TPR.G5626' => 'tpr', 'TWI09G1632' => 'twi', 'TWI23G1230' => 'twi', 'TWI53G1064' => 'twi', 'TWI59G0751' => 'twi', 'TWI74G0947' => 'twi', 'TWI77G0337' => 'twi', 'TWI79G1254' => 'twi', 'unitig_0.g2341' => 'ugi', 'unitig_26.g10006' => 'ugi', 'unitig_26.g10008' => 'ugi', 'unitig_26.g9192' => 'ugi', 'vmacro14547' => 'vma', 'vmacro15333' => 'vma', 'vmacro18743' => 'vma', 'vmacro20166' => 'vma', 'VMungo0331G0523' => 'vmu', 'VMungo0331G1202' => 'vmu', 'VMungo0720G1228' => 'vmu', 'VMungo0720G1514' => 'vmu', 'VMungo1080G0169' => 'vmu', 'VMungo1127G1475' => 'vmu', 'VMungo1383G1208' => 'vmu', 'VMungo1383G1698' => 'vmu', 'Zm00001eb012270' => 'zma', 'Zm00001eb054100' => 'zma', 'Zm00001eb063350' => 'zma', 'Zm00001eb328560' => 'zma', 'Zm00001eb342820' => 'zma', 'Zm00001eb362210' => 'zma', 'Zm00001eb397730' => 'zma', 'Zm00001eb399750' => 'zma' ), 'gf_id' => 'HOM05D000959', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000959' ), 'data_identifier' => 'HOM05D000959', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000959', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '622', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p07100' => 'bna', 'A03p11720' => 'bna', 'A05p08300' => 'bna', 'A05p13380' => 'bna', 'A09p54130' => 'bna', 'A10p16690' => 'bna', 'A10p16700' => 'bna', 'A10p33390' => 'bna', 'Aa31LG10G16020' => 'aar', 'Aa31LG1G11810' => 'aar', 'Aa31LG1G11830' => 'aar', 'Aa31LG1G22510' => 'aar', 'Aa31LG5G4890' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5793' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2310' => 'aag', 'Actinidia08499' => 'ach', 'Actinidia11262' => 'ach', 'Actinidia23926' => 'ach', 'Actinidia34420' => 'ach', 'Actinidia36970' => 'ach', 'Ah.02g111220' => 'amhyb', 'Ah.15g097750' => 'amhyb', 'AL4G27500' => 'aly', 'AL6G11470' => 'aly', 'AL8G35950' => 'aly', 'AL8G35960' => 'aly', 'AL8G35970' => 'aly', 'Aqoxy1G00912' => 'aox', 'Aqoxy2G02253' => 'aox', 'Aqoxy2G02411' => 'aox', 'Aqoxy5G00485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BZ66YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K8ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM4FUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6BF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HFV7XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25JBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0YNNV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MAKK6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P70IT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP2Z6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V61LZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YWP64R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3S9AI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7PGHH' => 'arhy', 'AT2G32150' => 'ath', 'AT3G62040' => 'ath', 'AT5G02230' => 'ath', 'AT5G59480' => 'ath', 'AT5G59490' => 'ath', 'ATR0332G060' => 'atr', 'ATR0559G190' => 'atr', 'ATR0693G294' => 'atr', 'Atru.chr3.3975' => 'acertr', 'Atru.chr3.3976' => 'acertr', 'Atru.chr3.3977' => 'acertr', 'Atru.chr4.2498' => 'acertr', 'Atru.chr5.838' => 'acertr', 'Atru.chr8.1990' => 'acertr', 'Atru.chr8.1991' => 'acertr', 'Atru.chr8.1992' => 'acertr', 'AUR62001759' => 'cqu', 'AUR62009545' => 'cqu', 'AUR62010474' => 'cqu', 'AUR62025820' => 'cqu', 'AUR62030422' => 'cqu', 'AUR62033605' => 'cqu', 'AUR62038615' => 'cqu', 'AUR62041347' => 'cqu', 'BcaB01g04574' => 'bca', 'BcaB02g09263' => 'bca', 'BcaB02g10453' => 'bca', 'BcaB05g22513' => 'bca', 'BcaB08g36253' => 'bca', 'BcaB08g36254' => 'bca', 'BcaC01g06519' => 'bca', 'BcaC02g11889' => 'bca', 'BcaC03g14010' => 'bca', 'BcaC03g18439' => 'bca', 'BcaC04g19765' => 'bca', 'BcaC09g48432' => 'bca', 'BcaNung07302' => 'bca', 'BolC2t06040H' => 'bol', 'BolC2t07346H' => 'bol', 'BolC3t13817H' => 'bol', 'BolC4t22625H' => 'bol', 'BolC4t23297H' => 'bol', 'BolC8t51278H' => 'bol', 'BolC9t58050H' => 'bol', 'BolC9t58051H' => 'bol', 'BolC9t60163H' => 'bol', 'BraA02t04712Z' => 'bra', 'BraA02t05791Z' => 'bra', 'BraA03t10483Z' => 'bra', 'BraA05t19795Z' => 'bra', 'BraA05t20276Z' => 'bra', 'BraA09t40827Z' => 'bra', 'BraA10t43750Z' => 'bra', 'BraA10t43751Z' => 'bra', 'BraA10t45370Z' => 'bra', 'C02p00400' => 'bna', 'C02p12460' => 'bna', 'C03p13680' => 'bna', 'C04p10270' => 'bna', 'C04p17500' => 'bna', 'C08p37010' => 'bna', 'C09p51880' => 'bna', 'C09p51890' => 'bna', 'C09p74300' => 'bna', 'CAN.G179.26' => 'can', 'CAN.G3384.1' => 'can', 'CAN.G394.68' => 'can', 'CAN.G907.13' => 'can', 'CANSAT11G0012' => 'cansat', 'CANSAT25G1586' => 'cansat', 'CANSAT35G0735' => 'cansat', 'CANSAT54G0556' => 'cansat', 'CANSAT64G0356' => 'cansat', 'CANSAT78G2042' => 'cansat', 'CARHR125920' => 'chi', 'CARHR131910' => 'chi', 'CARHR172390' => 'chi', 'CARHR211140' => 'chi', 'CARHR285850' => 'chi', 'CARHR285860' => 'chi', 'Carub.0004s1347' => 'cru', 'Carub.0004s1960' => 'cru', 'Carub.0005s2880' => 'cru', 'Carub.0006s0107' => 'cru', 'Carub.0008s2015' => 'cru', 'Carub.0008s2016' => 'cru', 'Carub.0008s2017' => 'cru', 'Ca_01315_v3' => 'car', 'Ca_05063_v3' => 'car', 'Ca_10231_v3' => 'car', 'Ca_10913_v3' => 'car', 'Ca_19156_v3' => 'car', 'Ca_23644_v3' => 'car', 'Ca_26735_v3' => 'car', 'Cc01_g13130' => 'ccan', 'Cc02_g21690' => 'ccan', 'Cc03_g03600' => 'ccan', 'Cc06_g02510' => 'ccan', 'CDE02G1265' => 'cde', 'CDE05G0415' => 'cde', 'CDE08G1082' => 'cde', 'Cfa005780' => 'cfa', 'Cfa011522' => 'cfa', 'Cfa011523' => 'cfa', 'Cfa015627' => 'cfa', 'Cfa017359' => 'cfa', 'Ciclev10005687m.g' => 'ccl', 'Ciclev10012173m.g' => 'ccl', 'Ciclev10021621m.g' => 'ccl', 'Ciclev10028968m.g' => 'ccl', 'Ciclev10029907m.g' => 'ccl', 'CiPaw.01G164800' => 'cil', 'CiPaw.07G083700' => 'cil', 'CiPaw.07G127000' => 'cil', 'CiPaw.07G136900' => 'cil', 'CiPaw.08G081700' => 'cil', 'CiPaw.09G194600' => 'cil', 'CiPaw.10G146500' => 'cil', 'CiPaw.13G091500' => 'cil', 'CiPaw.13G091600' => 'cil', 'ClCG00G003390' => 'cla', 'ClCG01G007220' => 'cla', 'ClCG03G001370' => 'cla', 'ClCG04G008100' => 'cla', 'ClCG06G006110' => 'cla', 'ClCG06G006130' => 'cla', 'ClCG10G021210' => 'cla', 'COL.COLO4_07648' => 'col', 'COL.COLO4_07650' => 'col', 'COL.COLO4_07651' => 'col', 'COL.COLO4_14780' => 'col', 'COL.COLO4_18546' => 'col', 'COL.COLO4_18547' => 'col', 'COL.COLO4_23103' => 'col', 'COL.COLO4_30419' => 'col', 'COL.COLO4_34232' => 'col', 'Cpa.g.sc169.20' => 'cpa', 'Cpa.g.sc57.45' => 'cpa', 'Cpa.g.sc58.124' => 'cpa', 'Cpa.g.sc58.125' => 'cpa', 'Cpa.g.sc81.118' => 'cpa', 'Cpa.g.sc81.119' => 'cpa', 'Cre12.g524700' => 'cre', 'CsaV3_1G034430' => 'csa', 'CsaV3_1G034440' => 'csa', 'CsaV3_1G034450' => 'csa', 'CsaV3_3G034830' => 'csa', 'CsaV3_4G025090' => 'csa', 'CsaV3_5G018660' => 'csa', 'CsaV3_6G038160' => 'csa', 'CSS0003447' => 'camsi', 'CSS0017840' => 'camsi', 'CSS0019260' => 'camsi', 'CSS0040375' => 'camsi', 'CSS0042533' => 'camsi', 'DCAR_005960' => 'dca', 'DCAR_012104' => 'dca', 'DCAR_012105' => 'dca', 'DCAR_012293' => 'dca', 'DCAR_015632' => 'dca', 'DCAR_024602' => 'dca', 'DCAR_028752' => 'dca', 'Dinv06261' => 'din', 'Dinv13982' => 'din', 'Dinv17029' => 'din', 'Dinv18463' => 'din', 'Dinv33181' => 'din', 'Dinv35585' => 'din', 'Dinv37161' => 'din', 'Dinv42977' => 'din', 'Dinv43122' => 'din', 'Dinv44517' => 'din', 'Duzib093G0256' => 'dzi', 'Duzib106G1254' => 'dzi', 'Duzib128G1789' => 'dzi', 'Duzib133G0633' => 'dzi', 'Duzib138G0510' => 'dzi', 'Duzib150G1084' => 'dzi', 'Duzib168G0488' => 'dzi', 'Duzib168G1523' => 'dzi', 'Duzib170G0133' => 'dzi', 'ECA234G1433' => 'eca', 'ECA236G1432' => 'eca', 'ECA236G2256' => 'eca', 'ECA236G2365' => 'eca', 'ECA236G4830' => 'eca', 'ECA248G1505' => 'eca', 'EL10Ac3g06431' => 'bvu', 'EL10Ac5g12577' => 'bvu', 'EL10Ac6g13533' => 'bvu', 'EL10Ac7g16045' => 'bvu', 'Eucgr.A01281' => 'egr', 'Eucgr.B02326' => 'egr', 'Eucgr.H03532' => 'egr', 'Eucgr.K00553' => 'egr', 'Eucgr.K03116' => 'egr', 'FAN02G3963' => 'fan', 'FAN05G0438' => 'fan', 'FAN09G2434' => 'fan', 'FAN12G3984' => 'fan', 'FAN14G0798' => 'fan', 'FAN17G0652' => 'fan', 'FAN19G1988' => 'fan', 'FAN22G0632' => 'fan', 'FAN23G0387' => 'fan', 'FAN26G1323' => 'fan', 'FAN28G0666' => 'fan', 'FvH4_1g26080' => 'fve', 'FvH4_3g36780' => 'fve', 'FvH4_4g15270' => 'fve', 'FvH4_6g13490' => 'fve', 'Glyma.01G098700' => 'gma', 'Glyma.03G065900' => 'gma', 'Glyma.03G073754' => 'gma', 'Glyma.03G073758' => 'gma', 'Glyma.03G083200' => 'gma', 'Glyma.03G225500' => 'gma', 'Glyma.05G037766' => 'gma', 'Glyma.07G133500' => 'gma', 'Glyma.10G139400' => 'gma', 'Glyma.10G248900' => 'gma', 'Glyma.11G137800' => 'gma', 'Glyma.12G061300' => 'gma', 'Glyma.13G337900' => 'gma', 'Glyma.15G036600' => 'gma', 'Glyma.18G182800' => 'gma', 'Glyma.19G222500' => 'gma', 'Glyma.20G144800' => 'gma', 'Gohir.A01G222000' => 'ghi', 'Gohir.A03G044000' => 'ghi', 'Gohir.A03G044100' => 'ghi', 'Gohir.A04G083100' => 'ghi', 'Gohir.A07G127200' => 'ghi', 'Gohir.A07G132400' => 'ghi', 'Gohir.A08G000700' => 'ghi', 'Gohir.A11G327300' => 'ghi', 'Gohir.D01G211500' => 'ghi', 'Gohir.D03G123400' => 'ghi', 'Gohir.D03G123500' => 'ghi', 'Gohir.D04G121800' => 'ghi', 'Gohir.D07G131500' => 'ghi', 'Gohir.D07G136600' => 'ghi', 'Gohir.D08G011600' => 'ghi', 'Gohir.D11G346200' => 'ghi', 'Gorai.001G142800' => 'gra', 'Gorai.001G148700' => 'gra', 'Gorai.002G257300' => 'gra', 'Gorai.003G130000' => 'gra', 'Gorai.003G130100' => 'gra', 'Gorai.004G005300' => 'gra', 'Gorai.007G376500' => 'gra', 'Gorai.012G104700' => 'gra', 'GSVIVG01017946001' => 'vvi', 'GSVIVG01024928001' => 'vvi', 'GSVIVG01028227001' => 'vvi', 'GSVIVG01034151001' => 'vvi', 'HanXRQChr05g0135031' => 'han', 'HanXRQChr05g0135041' => 'han', 'HanXRQChr05g0140021' => 'han', 'HanXRQChr06g0178981' => 'han', 'HanXRQChr07g0188251' => 'han', 'HanXRQChr08g0235311' => 'han', 'HanXRQChr09g0271011' => 'han', 'HanXRQChr10g0293321' => 'han', 'HanXRQChr13g0388171' => 'han', 'Haze_00916' => 'cav', 'Haze_05063' => 'cav', 'Haze_20814' => 'cav', 'Haze_24128' => 'cav', 'Hma1.2p1_0745F.1_g212010' => 'hma', 'Hma1.2p1_0757F.1_g213260' => 'hma', 'Hma1.2p1_0936F.1_g238840' => 'hma', 'Hma1.2p1_1735F.1_g299890' => 'hma', 'Hma1.2p1_1861F.1_g305685' => 'hma', 'HPP92_003397' => 'vpl', 'HPP92_012597' => 'vpl', 'HPP92_015520' => 'vpl', 'HPP92_015539' => 'vpl', 'HPP92_020373' => 'vpl', 'Hund04938' => 'sun', 'Hund10677' => 'sun', 'Hund11033' => 'sun', 'Hund12155' => 'sun', 'Lalb_Chr01g0022551' => 'lal', 'Lalb_Chr03g0042341' => 'lal', 'Lalb_Chr07g0192931' => 'lal', 'Lalb_Chr12g0209551' => 'lal', 'Lalb_Chr19g0125251' => 'lal', 'Lalb_Chr19g0137891' => 'lal', 'Lalb_Chr21g0304641' => 'lal', 'Lalb_Chr21g0309881' => 'lal', 'Lj1A5T12' => 'lonja', 'Lj1C148G10' => 'lonja', 'Lj2A93T83' => 'lonja', 'Lj3A738G68' => 'lonja', 'Lj3C966T1' => 'lonja', 'Lj3g0018958' => 'lja', 'Lj3g0021831' => 'lja', 'Lj3g0025443' => 'lja', 'Lj4g0026809' => 'lja', 'Lj5g0012558' => 'lja', 'Lj5g0021586' => 'lja', 'Lsat_1_v5_gn_5_156840' => 'lsa', 'Lsat_1_v5_gn_8_73460' => 'lsa', 'Lsat_1_v5_gn_8_73481' => 'lsa', 'Lsat_1_v5_gn_9_31601' => 'lsa', 'Lsat_1_v5_gn_9_77320' => 'lsa', 'Manes.01G171300' => 'mes', 'Manes.01G171400' => 'mes', 'Manes.01G236100' => 'mes', 'Manes.02G130500' => 'mes', 'Manes.02G130600' => 'mes', 'Manes.03G180200' => 'mes', 'Manes.05G007000' => 'mes', 'Manes.08G084400' => 'mes', 'Manes.09G092600' => 'mes', 'Manes.15G027900' => 'mes', 'MBI04_g40948_MAGBIO' => 'mbi', 'MBI14_g12123_MAGBIO' => 'mbi', 'MBI18_g28915_MAGBIO' => 'mbi', 'MCO09G053' => 'mco', 'MCO11G782' => 'mco', 'MCO15G215' => 'mco', 'MD03G1088500' => 'mdo', 'MD03G1088600' => 'mdo', 'MD04G1130800' => 'mdo', 'MD09G1291700' => 'mdo', 'MD11G1097500' => 'mdo', 'MD11G1097600' => 'mdo', 'MD12G1143900' => 'mdo', 'MD13G1191400' => 'mdo', 'MD16G1191500' => 'mdo', 'Medtr1g085570' => 'mtr', 'Medtr1g104610' => 'mtr', 'Medtr2g097520' => 'mtr', 'Medtr4g021800' => 'mtr', 'Medtr4g021825' => 'mtr', 'Medtr4g064270' => 'mtr', 'Medtr4g064380' => 'mtr', 'Medtr7g062150' => 'mtr', 'MELO3C003138.2' => 'cme', 'MELO3C005187.2' => 'cme', 'MELO3C009252.2' => 'cme', 'MELO3C014481.2' => 'cme', 'MELO3C020616.2' => 'cme', 'MELO3C020617.2' => 'cme', 'MELO3C020618.2' => 'cme', 'Migut.G00328' => 'egut', 'Migut.J00320' => 'egut', 'Migut.L01000' => 'egut', 'Migut.L01953' => 'egut', 'MSTRG.10253' => 'ama', 'MSTRG.19077' => 'ama', 'MSTRG.26780' => 'ama', 'MSTRG.4023' => 'ama', 'MSTRG.5655' => 'ama', 'MSTRG.9992' => 'ama', 'Nitab4.5_0000043g0310' => 'nta', 'Nitab4.5_0000463g0080' => 'nta', 'Nitab4.5_0000705g0170' => 'nta', 'Nitab4.5_0001326g0060' => 'nta', 'Nitab4.5_0001628g0030' => 'nta', 'Nitab4.5_0002103g0110' => 'nta', 'Nitab4.5_0002946g0030' => 'nta', 'Nitab4.5_0004639g0030' => 'nta', 'Nn2g11149' => 'nnu', 'Nn2g13389' => 'nnu', 'Nn4g25326' => 'nnu', 'Nn4g26290' => 'nnu', 'Nn5g29865' => 'nnu', 'Oeu004163.1' => 'oeu', 'Oeu006901.1' => 'oeu', 'Oeu010096.1' => 'oeu', 'Oeu024340.1' => 'oeu', 'Oeu048369.1' => 'oeu', 'Os01g0973000' => 'osa', 'Os03g0273800' => 'osa', 'Os03g0701200' => 'osa', 'Os03g0834050' => 'osa', 'Os07g0634400' => 'osa', 'Peaxi162Scf00092g01414' => 'pax', 'Peaxi162Scf00165g00818' => 'pax', 'Peaxi162Scf00309g00516' => 'pax', 'Peaxi162Scf00774g00218' => 'pax', 'PGR004G1824' => 'pgr', 'PGR004G2606' => 'pgr', 'PGR031G2716' => 'pgr', 'PGR102G2460' => 'pgr', 'PGR142G2599' => 'pgr', 'PGSC0003DMG400000843' => 'stu', 'PGSC0003DMG400008829' => 'stu', 'PGSC0003DMG400030418' => 'stu', 'PGSC0003DMG400031834' => 'stu', 'PGSC0003DMG401028300' => 'stu', 'PGSC0003DMG402028300' => 'stu', 'Phvul.001G219300' => 'pvu', 'Phvul.007G056000' => 'pvu', 'Phvul.007G208000' => 'pvu', 'Phvul.008G119500' => 'pvu', 'Phvul.010G011200' => 'pvu', 'Phvul.010G014800' => 'pvu', 'Phvul.011G062900' => 'pvu', 'Phvul.L007043' => 'pvu', 'Potri.001G242300' => 'ptr', 'Potri.002G185300' => 'ptr', 'Potri.006G086900' => 'ptr', 'Potri.008G151700' => 'ptr', 'Potri.009G033500' => 'ptr', 'Potri.010G089300' => 'ptr', 'Potri.014G110800' => 'ptr', 'Pp3c27_8130' => 'ppa', 'Pp3c6_27410' => 'ppa', 'PRCOL_00001659' => 'pco', 'PRCOL_00001927' => 'pco', 'PRCOL_00003649' => 'pco', 'Prupe.1G011600' => 'ppe', 'Prupe.3G000800' => 'ppe', 'Prupe.3G001100' => 'ppe', 'Prupe.6G072700' => 'ppe', 'Prupe.6G072800' => 'ppe', 'Prupe.6G257300' => 'ppe', 'Prupe.8G033000' => 'ppe', 'Psat0s2633g0080' => 'psa', 'Psat0s3396g0080' => 'psa', 'Psat0s3396g0200' => 'psa', 'Psat3g139080' => 'psa', 'Psat5g285080' => 'psa', 'Psat6g157760' => 'psa', 'Psat6g208440' => 'psa', 'Psat7g215320' => 'psa', 'Psat7g215400' => 'psa', 'Psat7g235600' => 'psa', 'Psat7g235760' => 'psa', 'PSO063G4603' => 'pso', 'PSO210G0182' => 'pso', 'PSO210G0196' => 'pso', 'PSO339G0394' => 'pso', 'PSO339G4127' => 'pso', 'PSO513G0064' => 'pso', 'PSO761G0079' => 'pso', 'QL01p031003' => 'qlo', 'QL01p031078' => 'qlo', 'QL06p003004' => 'qlo', 'QL07p048731' => 'qlo', 'QL09p037427' => 'qlo', 'RcHm_v2.0_Chr3g0466361' => 'rch', 'RcHm_v2.0_Chr3g0485571' => 'rch', 'RcHm_v2.0_Chr4g0416551' => 'rch', 'RcHm_v2.0_Chr5g0065831' => 'rch', 'Rhsim01G0230500' => 'rsi', 'Rhsim05G0194000' => 'rsi', 'Rhsim08G0250400' => 'rsi', 'Sabra02G0131000' => 'sbr', 'Sabra06G0066300' => 'sbr', 'Sabra08G0115500' => 'sbr', 'Sabra09G0023900' => 'sbr', 'Sabra10G0054000' => 'sbr', 'Sabra14G0081500' => 'sbr', 'Sabra16G0147100' => 'sbr', 'SalBow2G2957' => 'sbo', 'SalBow4G3320' => 'sbo', 'SalBow8G1894' => 'sbo', 'Sc07g0007950' => 'sci', 'Sc12g0001360' => 'sci', 'Sc13g0004330' => 'sci', 'Sc20g0005010' => 'sci', 'Sed0000361' => 'sed', 'Sed0001706' => 'sed', 'Sed0002422' => 'sed', 'Sed0004029' => 'sed', 'Sed0004602' => 'sed', 'Sed0004943' => 'sed', 'Sed0008646' => 'sed', 'Sed0023313' => 'sed', 'Sed0024843' => 'sed', 'SEGI_00081' => 'sgi', 'SEGI_00947' => 'sgi', 'SEGI_04046' => 'sgi', 'SEGI_06880' => 'sgi', 'SEGI_09736' => 'sgi', 'SEGI_12741' => 'sgi', 'SEGI_14530' => 'sgi', 'SEGI_20705' => 'sgi', 'SEGI_26088' => 'sgi', 'SEGI_28323' => 'sgi', 'SEGI_33343' => 'sgi', 'SGA_v2.0_scaffold126G33775' => 'sas', 'SGA_v2.0_scaffold2G01337' => 'sas', 'SGA_v2.0_scaffold38G15006' => 'sas', 'SGA_v2.0_scaffold39G15264' => 'sas', 'SGA_v2.0_scaffold453G51880' => 'sas', 'SHI12696' => 'shi', 'SMO367G1096' => 'smo', 'Solyc01g068630.3' => 'sly', 'Solyc05g011880.3' => 'sly', 'Solyc06g076300.3' => 'sly', 'Solyc09g010940.4' => 'sly', 'Solyc09g075890.3' => 'sly', 'Sopen01g030560' => 'spe', 'Sopen05g006630' => 'spe', 'Sopen06g032720' => 'spe', 'Sopen09g005660' => 'spe', 'Sopen09g030690' => 'spe', 'Sp4g14540' => 'spa', 'Sp4g20030' => 'spa', 'Sp5g01320' => 'spa', 'Sp6g21170' => 'spa', 'Sp6g21180' => 'spa', 'Sp6g21190' => 'spa', 'Sp6g40220' => 'spa', 'TAR362G0122' => 'tar', 'TAR362G1338' => 'tar', 'TAR369G0590' => 'tar', 'TAR371G0824' => 'tar', 'TAR622G1429' => 'tar', 'TAR623G0734' => 'tar', 'TAR625G0441' => 'tar', 'TAR629G0976' => 'tar', 'TAR633G1195' => 'tar', 'TAR636G2660' => 'tar', 'THA.LOC104799440' => 'tha', 'THA.LOC104800966' => 'tha', 'THA.LOC104806559' => 'tha', 'THA.LOC104810765' => 'tha', 'THA.LOC104816266' => 'tha', 'THA.LOC104817419' => 'tha', 'THA.LOC104827021' => 'tha', 'Thecc.01G327400' => 'tca', 'Thecc.04G229200' => 'tca', 'Thecc.05G037400' => 'tca', 'Thecc.09G318600' => 'tca', 'Thecc.09G318700' => 'tca', 'Thhalv10006238m.g' => 'esa', 'Thhalv10014321m.g' => 'esa', 'Thhalv10014335m.g' => 'esa', 'Thhalv10015826m.g' => 'esa', 'Thhalv10017107m.g' => 'esa', 'Thhalv10017180m.g' => 'esa', 'Thhalv10029339m.g' => 'esa', 'TPR.G1699' => 'tpr', 'TPR.G23609' => 'tpr', 'TPR.G3081' => 'tpr', 'TPR.G40397' => 'tpr', 'TPR.G5522' => 'tpr', 'TPR.G5618' => 'tpr', 'TPR.G5626' => 'tpr', 'TWI09G1632' => 'twi', 'TWI23G1230' => 'twi', 'TWI53G1064' => 'twi', 'TWI59G0751' => 'twi', 'TWI74G0947' => 'twi', 'TWI77G0337' => 'twi', 'TWI79G1254' => 'twi', 'unitig_0.g2341' => 'ugi', 'unitig_26.g10006' => 'ugi', 'unitig_26.g10008' => 'ugi', 'unitig_26.g9192' => 'ugi', 'vmacro14547' => 'vma', 'vmacro15333' => 'vma', 'vmacro18743' => 'vma', 'vmacro20166' => 'vma', 'VMungo0331G0523' => 'vmu', 'VMungo0331G1202' => 'vmu', 'VMungo0720G1228' => 'vmu', 'VMungo0720G1514' => 'vmu', 'VMungo1080G0169' => 'vmu', 'VMungo1127G1475' => 'vmu', 'VMungo1383G1208' => 'vmu', 'VMungo1383G1698' => 'vmu', 'Zm00001eb012270' => 'zma', 'Zm00001eb054100' => 'zma', 'Zm00001eb063350' => 'zma', 'Zm00001eb328560' => 'zma', 'Zm00001eb342820' => 'zma', 'Zm00001eb362210' => 'zma', 'Zm00001eb397730' => 'zma', 'Zm00001eb399750' => 'zma' ) $gf_id = 'HOM05D000959' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000959' ) $data_identifier = 'HOM05D000959' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 5, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 5, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 10, 'mbi' => (int) 3, 'mco' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 2, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 3, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 11, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399750' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000959', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '622', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p07100' => 'bna', 'A03p11720' => 'bna', 'A05p08300' => 'bna', 'A05p13380' => 'bna', 'A09p54130' => 'bna', 'A10p16690' => 'bna', 'A10p16700' => 'bna', 'A10p33390' => 'bna', 'Aa31LG10G16020' => 'aar', 'Aa31LG1G11810' => 'aar', 'Aa31LG1G11830' => 'aar', 'Aa31LG1G22510' => 'aar', 'Aa31LG5G4890' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5793' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2310' => 'aag', 'Actinidia08499' => 'ach', 'Actinidia11262' => 'ach', 'Actinidia23926' => 'ach', 'Actinidia34420' => 'ach', 'Actinidia36970' => 'ach', 'Ah.02g111220' => 'amhyb', 'Ah.15g097750' => 'amhyb', 'AL4G27500' => 'aly', 'AL6G11470' => 'aly', 'AL8G35950' => 'aly', 'AL8G35960' => 'aly', 'AL8G35970' => 'aly', 'Aqoxy1G00912' => 'aox', 'Aqoxy2G02253' => 'aox', 'Aqoxy2G02411' => 'aox', 'Aqoxy5G00485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BZ66YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K8ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM4FUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6BF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HFV7XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25JBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0YNNV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MAKK6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P70IT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP2Z6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V61LZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YWP64R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3S9AI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7PGHH' => 'arhy', 'AT2G32150' => 'ath', 'AT3G62040' => 'ath', 'AT5G02230' => 'ath', 'AT5G59480' => 'ath', 'AT5G59490' => 'ath', 'ATR0332G060' => 'atr', 'ATR0559G190' => 'atr', 'ATR0693G294' => 'atr', 'Atru.chr3.3975' => 'acertr', 'Atru.chr3.3976' => 'acertr', 'Atru.chr3.3977' => 'acertr', 'Atru.chr4.2498' => 'acertr', 'Atru.chr5.838' => 'acertr', 'Atru.chr8.1990' => 'acertr', 'Atru.chr8.1991' => 'acertr', 'Atru.chr8.1992' => 'acertr', 'AUR62001759' => 'cqu', 'AUR62009545' => 'cqu', 'AUR62010474' => 'cqu', 'AUR62025820' => 'cqu', 'AUR62030422' => 'cqu', 'AUR62033605' => 'cqu', 'AUR62038615' => 'cqu', 'AUR62041347' => 'cqu', 'BcaB01g04574' => 'bca', 'BcaB02g09263' => 'bca', 'BcaB02g10453' => 'bca', 'BcaB05g22513' => 'bca', 'BcaB08g36253' => 'bca', 'BcaB08g36254' => 'bca', 'BcaC01g06519' => 'bca', 'BcaC02g11889' => 'bca', 'BcaC03g14010' => 'bca', 'BcaC03g18439' => 'bca', 'BcaC04g19765' => 'bca', 'BcaC09g48432' => 'bca', 'BcaNung07302' => 'bca', 'BolC2t06040H' => 'bol', 'BolC2t07346H' => 'bol', 'BolC3t13817H' => 'bol', 'BolC4t22625H' => 'bol', 'BolC4t23297H' => 'bol', 'BolC8t51278H' => 'bol', 'BolC9t58050H' => 'bol', 'BolC9t58051H' => 'bol', 'BolC9t60163H' => 'bol', 'BraA02t04712Z' => 'bra', 'BraA02t05791Z' => 'bra', 'BraA03t10483Z' => 'bra', 'BraA05t19795Z' => 'bra', 'BraA05t20276Z' => 'bra', 'BraA09t40827Z' => 'bra', 'BraA10t43750Z' => 'bra', 'BraA10t43751Z' => 'bra', 'BraA10t45370Z' => 'bra', 'C02p00400' => 'bna', 'C02p12460' => 'bna', 'C03p13680' => 'bna', 'C04p10270' => 'bna', 'C04p17500' => 'bna', 'C08p37010' => 'bna', 'C09p51880' => 'bna', 'C09p51890' => 'bna', 'C09p74300' => 'bna', 'CAN.G179.26' => 'can', 'CAN.G3384.1' => 'can', 'CAN.G394.68' => 'can', 'CAN.G907.13' => 'can', 'CANSAT11G0012' => 'cansat', 'CANSAT25G1586' => 'cansat', 'CANSAT35G0735' => 'cansat', 'CANSAT54G0556' => 'cansat', 'CANSAT64G0356' => 'cansat', 'CANSAT78G2042' => 'cansat', 'CARHR125920' => 'chi', 'CARHR131910' => 'chi', 'CARHR172390' => 'chi', 'CARHR211140' => 'chi', 'CARHR285850' => 'chi', 'CARHR285860' => 'chi', 'Carub.0004s1347' => 'cru', 'Carub.0004s1960' => 'cru', 'Carub.0005s2880' => 'cru', 'Carub.0006s0107' => 'cru', 'Carub.0008s2015' => 'cru', 'Carub.0008s2016' => 'cru', 'Carub.0008s2017' => 'cru', 'Ca_01315_v3' => 'car', 'Ca_05063_v3' => 'car', 'Ca_10231_v3' => 'car', 'Ca_10913_v3' => 'car', 'Ca_19156_v3' => 'car', 'Ca_23644_v3' => 'car', 'Ca_26735_v3' => 'car', 'Cc01_g13130' => 'ccan', 'Cc02_g21690' => 'ccan', 'Cc03_g03600' => 'ccan', 'Cc06_g02510' => 'ccan', 'CDE02G1265' => 'cde', 'CDE05G0415' => 'cde', 'CDE08G1082' => 'cde', 'Cfa005780' => 'cfa', 'Cfa011522' => 'cfa', 'Cfa011523' => 'cfa', 'Cfa015627' => 'cfa', 'Cfa017359' => 'cfa', 'Ciclev10005687m.g' => 'ccl', 'Ciclev10012173m.g' => 'ccl', 'Ciclev10021621m.g' => 'ccl', 'Ciclev10028968m.g' => 'ccl', 'Ciclev10029907m.g' => 'ccl', 'CiPaw.01G164800' => 'cil', 'CiPaw.07G083700' => 'cil', 'CiPaw.07G127000' => 'cil', 'CiPaw.07G136900' => 'cil', 'CiPaw.08G081700' => 'cil', 'CiPaw.09G194600' => 'cil', 'CiPaw.10G146500' => 'cil', 'CiPaw.13G091500' => 'cil', 'CiPaw.13G091600' => 'cil', 'ClCG00G003390' => 'cla', 'ClCG01G007220' => 'cla', 'ClCG03G001370' => 'cla', 'ClCG04G008100' => 'cla', 'ClCG06G006110' => 'cla', 'ClCG06G006130' => 'cla', 'ClCG10G021210' => 'cla', 'COL.COLO4_07648' => 'col', 'COL.COLO4_07650' => 'col', 'COL.COLO4_07651' => 'col', 'COL.COLO4_14780' => 'col', 'COL.COLO4_18546' => 'col', 'COL.COLO4_18547' => 'col', 'COL.COLO4_23103' => 'col', 'COL.COLO4_30419' => 'col', 'COL.COLO4_34232' => 'col', 'Cpa.g.sc169.20' => 'cpa', 'Cpa.g.sc57.45' => 'cpa', 'Cpa.g.sc58.124' => 'cpa', 'Cpa.g.sc58.125' => 'cpa', 'Cpa.g.sc81.118' => 'cpa', 'Cpa.g.sc81.119' => 'cpa', 'Cre12.g524700' => 'cre', 'CsaV3_1G034430' => 'csa', 'CsaV3_1G034440' => 'csa', 'CsaV3_1G034450' => 'csa', 'CsaV3_3G034830' => 'csa', 'CsaV3_4G025090' => 'csa', 'CsaV3_5G018660' => 'csa', 'CsaV3_6G038160' => 'csa', 'CSS0003447' => 'camsi', 'CSS0017840' => 'camsi', 'CSS0019260' => 'camsi', 'CSS0040375' => 'camsi', 'CSS0042533' => 'camsi', 'DCAR_005960' => 'dca', 'DCAR_012104' => 'dca', 'DCAR_012105' => 'dca', 'DCAR_012293' => 'dca', 'DCAR_015632' => 'dca', 'DCAR_024602' => 'dca', 'DCAR_028752' => 'dca', 'Dinv06261' => 'din', 'Dinv13982' => 'din', 'Dinv17029' => 'din', 'Dinv18463' => 'din', 'Dinv33181' => 'din', 'Dinv35585' => 'din', 'Dinv37161' => 'din', 'Dinv42977' => 'din', 'Dinv43122' => 'din', 'Dinv44517' => 'din', 'Duzib093G0256' => 'dzi', 'Duzib106G1254' => 'dzi', 'Duzib128G1789' => 'dzi', 'Duzib133G0633' => 'dzi', 'Duzib138G0510' => 'dzi', 'Duzib150G1084' => 'dzi', 'Duzib168G0488' => 'dzi', 'Duzib168G1523' => 'dzi', 'Duzib170G0133' => 'dzi', 'ECA234G1433' => 'eca', 'ECA236G1432' => 'eca', 'ECA236G2256' => 'eca', 'ECA236G2365' => 'eca', 'ECA236G4830' => 'eca', 'ECA248G1505' => 'eca', 'EL10Ac3g06431' => 'bvu', 'EL10Ac5g12577' => 'bvu', 'EL10Ac6g13533' => 'bvu', 'EL10Ac7g16045' => 'bvu', 'Eucgr.A01281' => 'egr', 'Eucgr.B02326' => 'egr', 'Eucgr.H03532' => 'egr', 'Eucgr.K00553' => 'egr', 'Eucgr.K03116' => 'egr', 'FAN02G3963' => 'fan', 'FAN05G0438' => 'fan', 'FAN09G2434' => 'fan', 'FAN12G3984' => 'fan', 'FAN14G0798' => 'fan', 'FAN17G0652' => 'fan', 'FAN19G1988' => 'fan', 'FAN22G0632' => 'fan', 'FAN23G0387' => 'fan', 'FAN26G1323' => 'fan', 'FAN28G0666' => 'fan', 'FvH4_1g26080' => 'fve', 'FvH4_3g36780' => 'fve', 'FvH4_4g15270' => 'fve', 'FvH4_6g13490' => 'fve', 'Glyma.01G098700' => 'gma', 'Glyma.03G065900' => 'gma', 'Glyma.03G073754' => 'gma', 'Glyma.03G073758' => 'gma', 'Glyma.03G083200' => 'gma', 'Glyma.03G225500' => 'gma', 'Glyma.05G037766' => 'gma', 'Glyma.07G133500' => 'gma', 'Glyma.10G139400' => 'gma', 'Glyma.10G248900' => 'gma', 'Glyma.11G137800' => 'gma', 'Glyma.12G061300' => 'gma', 'Glyma.13G337900' => 'gma', 'Glyma.15G036600' => 'gma', 'Glyma.18G182800' => 'gma', 'Glyma.19G222500' => 'gma', 'Glyma.20G144800' => 'gma', 'Gohir.A01G222000' => 'ghi', 'Gohir.A03G044000' => 'ghi', 'Gohir.A03G044100' => 'ghi', 'Gohir.A04G083100' => 'ghi', 'Gohir.A07G127200' => 'ghi', 'Gohir.A07G132400' => 'ghi', 'Gohir.A08G000700' => 'ghi', 'Gohir.A11G327300' => 'ghi', 'Gohir.D01G211500' => 'ghi', 'Gohir.D03G123400' => 'ghi', 'Gohir.D03G123500' => 'ghi', 'Gohir.D04G121800' => 'ghi', 'Gohir.D07G131500' => 'ghi', 'Gohir.D07G136600' => 'ghi', 'Gohir.D08G011600' => 'ghi', 'Gohir.D11G346200' => 'ghi', 'Gorai.001G142800' => 'gra', 'Gorai.001G148700' => 'gra', 'Gorai.002G257300' => 'gra', 'Gorai.003G130000' => 'gra', 'Gorai.003G130100' => 'gra', 'Gorai.004G005300' => 'gra', 'Gorai.007G376500' => 'gra', 'Gorai.012G104700' => 'gra', 'GSVIVG01017946001' => 'vvi', 'GSVIVG01024928001' => 'vvi', 'GSVIVG01028227001' => 'vvi', 'GSVIVG01034151001' => 'vvi', 'HanXRQChr05g0135031' => 'han', 'HanXRQChr05g0135041' => 'han', 'HanXRQChr05g0140021' => 'han', 'HanXRQChr06g0178981' => 'han', 'HanXRQChr07g0188251' => 'han', 'HanXRQChr08g0235311' => 'han', 'HanXRQChr09g0271011' => 'han', 'HanXRQChr10g0293321' => 'han', 'HanXRQChr13g0388171' => 'han', 'Haze_00916' => 'cav', 'Haze_05063' => 'cav', 'Haze_20814' => 'cav', 'Haze_24128' => 'cav', 'Hma1.2p1_0745F.1_g212010' => 'hma', 'Hma1.2p1_0757F.1_g213260' => 'hma', 'Hma1.2p1_0936F.1_g238840' => 'hma', 'Hma1.2p1_1735F.1_g299890' => 'hma', 'Hma1.2p1_1861F.1_g305685' => 'hma', 'HPP92_003397' => 'vpl', 'HPP92_012597' => 'vpl', 'HPP92_015520' => 'vpl', 'HPP92_015539' => 'vpl', 'HPP92_020373' => 'vpl', 'Hund04938' => 'sun', 'Hund10677' => 'sun', 'Hund11033' => 'sun', 'Hund12155' => 'sun', 'Lalb_Chr01g0022551' => 'lal', 'Lalb_Chr03g0042341' => 'lal', 'Lalb_Chr07g0192931' => 'lal', 'Lalb_Chr12g0209551' => 'lal', 'Lalb_Chr19g0125251' => 'lal', 'Lalb_Chr19g0137891' => 'lal', 'Lalb_Chr21g0304641' => 'lal', 'Lalb_Chr21g0309881' => 'lal', 'Lj1A5T12' => 'lonja', 'Lj1C148G10' => 'lonja', 'Lj2A93T83' => 'lonja', 'Lj3A738G68' => 'lonja', 'Lj3C966T1' => 'lonja', 'Lj3g0018958' => 'lja', 'Lj3g0021831' => 'lja', 'Lj3g0025443' => 'lja', 'Lj4g0026809' => 'lja', 'Lj5g0012558' => 'lja', 'Lj5g0021586' => 'lja', 'Lsat_1_v5_gn_5_156840' => 'lsa', 'Lsat_1_v5_gn_8_73460' => 'lsa', 'Lsat_1_v5_gn_8_73481' => 'lsa', 'Lsat_1_v5_gn_9_31601' => 'lsa', 'Lsat_1_v5_gn_9_77320' => 'lsa', 'Manes.01G171300' => 'mes', 'Manes.01G171400' => 'mes', 'Manes.01G236100' => 'mes', 'Manes.02G130500' => 'mes', 'Manes.02G130600' => 'mes', 'Manes.03G180200' => 'mes', 'Manes.05G007000' => 'mes', 'Manes.08G084400' => 'mes', 'Manes.09G092600' => 'mes', 'Manes.15G027900' => 'mes', 'MBI04_g40948_MAGBIO' => 'mbi', 'MBI14_g12123_MAGBIO' => 'mbi', 'MBI18_g28915_MAGBIO' => 'mbi', 'MCO09G053' => 'mco', 'MCO11G782' => 'mco', 'MCO15G215' => 'mco', 'MD03G1088500' => 'mdo', 'MD03G1088600' => 'mdo', 'MD04G1130800' => 'mdo', 'MD09G1291700' => 'mdo', 'MD11G1097500' => 'mdo', 'MD11G1097600' => 'mdo', 'MD12G1143900' => 'mdo', 'MD13G1191400' => 'mdo', 'MD16G1191500' => 'mdo', 'Medtr1g085570' => 'mtr', 'Medtr1g104610' => 'mtr', 'Medtr2g097520' => 'mtr', 'Medtr4g021800' => 'mtr', 'Medtr4g021825' => 'mtr', 'Medtr4g064270' => 'mtr', 'Medtr4g064380' => 'mtr', 'Medtr7g062150' => 'mtr', 'MELO3C003138.2' => 'cme', 'MELO3C005187.2' => 'cme', 'MELO3C009252.2' => 'cme', 'MELO3C014481.2' => 'cme', 'MELO3C020616.2' => 'cme', 'MELO3C020617.2' => 'cme', 'MELO3C020618.2' => 'cme', 'Migut.G00328' => 'egut', 'Migut.J00320' => 'egut', 'Migut.L01000' => 'egut', 'Migut.L01953' => 'egut', 'MSTRG.10253' => 'ama', 'MSTRG.19077' => 'ama', 'MSTRG.26780' => 'ama', 'MSTRG.4023' => 'ama', 'MSTRG.5655' => 'ama', 'MSTRG.9992' => 'ama', 'Nitab4.5_0000043g0310' => 'nta', 'Nitab4.5_0000463g0080' => 'nta', 'Nitab4.5_0000705g0170' => 'nta', 'Nitab4.5_0001326g0060' => 'nta', 'Nitab4.5_0001628g0030' => 'nta', 'Nitab4.5_0002103g0110' => 'nta', 'Nitab4.5_0002946g0030' => 'nta', 'Nitab4.5_0004639g0030' => 'nta', 'Nn2g11149' => 'nnu', 'Nn2g13389' => 'nnu', 'Nn4g25326' => 'nnu', 'Nn4g26290' => 'nnu', 'Nn5g29865' => 'nnu', 'Oeu004163.1' => 'oeu', 'Oeu006901.1' => 'oeu', 'Oeu010096.1' => 'oeu', 'Oeu024340.1' => 'oeu', 'Oeu048369.1' => 'oeu', 'Os01g0973000' => 'osa', 'Os03g0273800' => 'osa', 'Os03g0701200' => 'osa', 'Os03g0834050' => 'osa', 'Os07g0634400' => 'osa', 'Peaxi162Scf00092g01414' => 'pax', 'Peaxi162Scf00165g00818' => 'pax', 'Peaxi162Scf00309g00516' => 'pax', 'Peaxi162Scf00774g00218' => 'pax', 'PGR004G1824' => 'pgr', 'PGR004G2606' => 'pgr', 'PGR031G2716' => 'pgr', 'PGR102G2460' => 'pgr', 'PGR142G2599' => 'pgr', 'PGSC0003DMG400000843' => 'stu', 'PGSC0003DMG400008829' => 'stu', 'PGSC0003DMG400030418' => 'stu', 'PGSC0003DMG400031834' => 'stu', 'PGSC0003DMG401028300' => 'stu', 'PGSC0003DMG402028300' => 'stu', 'Phvul.001G219300' => 'pvu', 'Phvul.007G056000' => 'pvu', 'Phvul.007G208000' => 'pvu', 'Phvul.008G119500' => 'pvu', 'Phvul.010G011200' => 'pvu', 'Phvul.010G014800' => 'pvu', 'Phvul.011G062900' => 'pvu', 'Phvul.L007043' => 'pvu', 'Potri.001G242300' => 'ptr', 'Potri.002G185300' => 'ptr', 'Potri.006G086900' => 'ptr', 'Potri.008G151700' => 'ptr', 'Potri.009G033500' => 'ptr', 'Potri.010G089300' => 'ptr', 'Potri.014G110800' => 'ptr', 'Pp3c27_8130' => 'ppa', 'Pp3c6_27410' => 'ppa', 'PRCOL_00001659' => 'pco', 'PRCOL_00001927' => 'pco', 'PRCOL_00003649' => 'pco', 'Prupe.1G011600' => 'ppe', 'Prupe.3G000800' => 'ppe', 'Prupe.3G001100' => 'ppe', 'Prupe.6G072700' => 'ppe', 'Prupe.6G072800' => 'ppe', 'Prupe.6G257300' => 'ppe', 'Prupe.8G033000' => 'ppe', 'Psat0s2633g0080' => 'psa', 'Psat0s3396g0080' => 'psa', 'Psat0s3396g0200' => 'psa', 'Psat3g139080' => 'psa', 'Psat5g285080' => 'psa', 'Psat6g157760' => 'psa', 'Psat6g208440' => 'psa', 'Psat7g215320' => 'psa', 'Psat7g215400' => 'psa', 'Psat7g235600' => 'psa', 'Psat7g235760' => 'psa', 'PSO063G4603' => 'pso', 'PSO210G0182' => 'pso', 'PSO210G0196' => 'pso', 'PSO339G0394' => 'pso', 'PSO339G4127' => 'pso', 'PSO513G0064' => 'pso', 'PSO761G0079' => 'pso', 'QL01p031003' => 'qlo', 'QL01p031078' => 'qlo', 'QL06p003004' => 'qlo', 'QL07p048731' => 'qlo', 'QL09p037427' => 'qlo', 'RcHm_v2.0_Chr3g0466361' => 'rch', 'RcHm_v2.0_Chr3g0485571' => 'rch', 'RcHm_v2.0_Chr4g0416551' => 'rch', 'RcHm_v2.0_Chr5g0065831' => 'rch', 'Rhsim01G0230500' => 'rsi', 'Rhsim05G0194000' => 'rsi', 'Rhsim08G0250400' => 'rsi', 'Sabra02G0131000' => 'sbr', 'Sabra06G0066300' => 'sbr', 'Sabra08G0115500' => 'sbr', 'Sabra09G0023900' => 'sbr', 'Sabra10G0054000' => 'sbr', 'Sabra14G0081500' => 'sbr', 'Sabra16G0147100' => 'sbr', 'SalBow2G2957' => 'sbo', 'SalBow4G3320' => 'sbo', 'SalBow8G1894' => 'sbo', 'Sc07g0007950' => 'sci', 'Sc12g0001360' => 'sci', 'Sc13g0004330' => 'sci', 'Sc20g0005010' => 'sci', 'Sed0000361' => 'sed', 'Sed0001706' => 'sed', 'Sed0002422' => 'sed', 'Sed0004029' => 'sed', 'Sed0004602' => 'sed', 'Sed0004943' => 'sed', 'Sed0008646' => 'sed', 'Sed0023313' => 'sed', 'Sed0024843' => 'sed', 'SEGI_00081' => 'sgi', 'SEGI_00947' => 'sgi', 'SEGI_04046' => 'sgi', 'SEGI_06880' => 'sgi', 'SEGI_09736' => 'sgi', 'SEGI_12741' => 'sgi', 'SEGI_14530' => 'sgi', 'SEGI_20705' => 'sgi', 'SEGI_26088' => 'sgi', 'SEGI_28323' => 'sgi', 'SEGI_33343' => 'sgi', 'SGA_v2.0_scaffold126G33775' => 'sas', 'SGA_v2.0_scaffold2G01337' => 'sas', 'SGA_v2.0_scaffold38G15006' => 'sas', 'SGA_v2.0_scaffold39G15264' => 'sas', 'SGA_v2.0_scaffold453G51880' => 'sas', 'SHI12696' => 'shi', 'SMO367G1096' => 'smo', 'Solyc01g068630.3' => 'sly', 'Solyc05g011880.3' => 'sly', 'Solyc06g076300.3' => 'sly', 'Solyc09g010940.4' => 'sly', 'Solyc09g075890.3' => 'sly', 'Sopen01g030560' => 'spe', 'Sopen05g006630' => 'spe', 'Sopen06g032720' => 'spe', 'Sopen09g005660' => 'spe', 'Sopen09g030690' => 'spe', 'Sp4g14540' => 'spa', 'Sp4g20030' => 'spa', 'Sp5g01320' => 'spa', 'Sp6g21170' => 'spa', 'Sp6g21180' => 'spa', 'Sp6g21190' => 'spa', 'Sp6g40220' => 'spa', 'TAR362G0122' => 'tar', 'TAR362G1338' => 'tar', 'TAR369G0590' => 'tar', 'TAR371G0824' => 'tar', 'TAR622G1429' => 'tar', 'TAR623G0734' => 'tar', 'TAR625G0441' => 'tar', 'TAR629G0976' => 'tar', 'TAR633G1195' => 'tar', 'TAR636G2660' => 'tar', 'THA.LOC104799440' => 'tha', 'THA.LOC104800966' => 'tha', 'THA.LOC104806559' => 'tha', 'THA.LOC104810765' => 'tha', 'THA.LOC104816266' => 'tha', 'THA.LOC104817419' => 'tha', 'THA.LOC104827021' => 'tha', 'Thecc.01G327400' => 'tca', 'Thecc.04G229200' => 'tca', 'Thecc.05G037400' => 'tca', 'Thecc.09G318600' => 'tca', 'Thecc.09G318700' => 'tca', 'Thhalv10006238m.g' => 'esa', 'Thhalv10014321m.g' => 'esa', 'Thhalv10014335m.g' => 'esa', 'Thhalv10015826m.g' => 'esa', 'Thhalv10017107m.g' => 'esa', 'Thhalv10017180m.g' => 'esa', 'Thhalv10029339m.g' => 'esa', 'TPR.G1699' => 'tpr', 'TPR.G23609' => 'tpr', 'TPR.G3081' => 'tpr', 'TPR.G40397' => 'tpr', 'TPR.G5522' => 'tpr', 'TPR.G5618' => 'tpr', 'TPR.G5626' => 'tpr', 'TWI09G1632' => 'twi', 'TWI23G1230' => 'twi', 'TWI53G1064' => 'twi', 'TWI59G0751' => 'twi', 'TWI74G0947' => 'twi', 'TWI77G0337' => 'twi', 'TWI79G1254' => 'twi', 'unitig_0.g2341' => 'ugi', 'unitig_26.g10006' => 'ugi', 'unitig_26.g10008' => 'ugi', 'unitig_26.g9192' => 'ugi', 'vmacro14547' => 'vma', 'vmacro15333' => 'vma', 'vmacro18743' => 'vma', 'vmacro20166' => 'vma', 'VMungo0331G0523' => 'vmu', 'VMungo0331G1202' => 'vmu', 'VMungo0720G1228' => 'vmu', 'VMungo0720G1514' => 'vmu', 'VMungo1080G0169' => 'vmu', 'VMungo1127G1475' => 'vmu', 'VMungo1383G1208' => 'vmu', 'VMungo1383G1698' => 'vmu', 'Zm00001eb012270' => 'zma', 'Zm00001eb054100' => 'zma', 'Zm00001eb063350' => 'zma', 'Zm00001eb328560' => 'zma', 'Zm00001eb342820' => 'zma', 'Zm00001eb362210' => 'zma', 'Zm00001eb397730' => 'zma', 'Zm00001eb399750' => 'zma' ), 'gf_id' => 'HOM05D000959', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000959' ), 'data_identifier' => 'HOM05D000959', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000959', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '622', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p07100' => 'bna', 'A03p11720' => 'bna', 'A05p08300' => 'bna', 'A05p13380' => 'bna', 'A09p54130' => 'bna', 'A10p16690' => 'bna', 'A10p16700' => 'bna', 'A10p33390' => 'bna', 'Aa31LG10G16020' => 'aar', 'Aa31LG1G11810' => 'aar', 'Aa31LG1G11830' => 'aar', 'Aa31LG1G22510' => 'aar', 'Aa31LG5G4890' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5793' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2310' => 'aag', 'Actinidia08499' => 'ach', 'Actinidia11262' => 'ach', 'Actinidia23926' => 'ach', 'Actinidia34420' => 'ach', 'Actinidia36970' => 'ach', 'Ah.02g111220' => 'amhyb', 'Ah.15g097750' => 'amhyb', 'AL4G27500' => 'aly', 'AL6G11470' => 'aly', 'AL8G35950' => 'aly', 'AL8G35960' => 'aly', 'AL8G35970' => 'aly', 'Aqoxy1G00912' => 'aox', 'Aqoxy2G02253' => 'aox', 'Aqoxy2G02411' => 'aox', 'Aqoxy5G00485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BZ66YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K8ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM4FUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6BF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HFV7XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25JBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0YNNV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MAKK6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P70IT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP2Z6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V61LZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YWP64R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3S9AI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7PGHH' => 'arhy', 'AT2G32150' => 'ath', 'AT3G62040' => 'ath', 'AT5G02230' => 'ath', 'AT5G59480' => 'ath', 'AT5G59490' => 'ath', 'ATR0332G060' => 'atr', 'ATR0559G190' => 'atr', 'ATR0693G294' => 'atr', 'Atru.chr3.3975' => 'acertr', 'Atru.chr3.3976' => 'acertr', 'Atru.chr3.3977' => 'acertr', 'Atru.chr4.2498' => 'acertr', 'Atru.chr5.838' => 'acertr', 'Atru.chr8.1990' => 'acertr', 'Atru.chr8.1991' => 'acertr', 'Atru.chr8.1992' => 'acertr', 'AUR62001759' => 'cqu', 'AUR62009545' => 'cqu', 'AUR62010474' => 'cqu', 'AUR62025820' => 'cqu', 'AUR62030422' => 'cqu', 'AUR62033605' => 'cqu', 'AUR62038615' => 'cqu', 'AUR62041347' => 'cqu', 'BcaB01g04574' => 'bca', 'BcaB02g09263' => 'bca', 'BcaB02g10453' => 'bca', 'BcaB05g22513' => 'bca', 'BcaB08g36253' => 'bca', 'BcaB08g36254' => 'bca', 'BcaC01g06519' => 'bca', 'BcaC02g11889' => 'bca', 'BcaC03g14010' => 'bca', 'BcaC03g18439' => 'bca', 'BcaC04g19765' => 'bca', 'BcaC09g48432' => 'bca', 'BcaNung07302' => 'bca', 'BolC2t06040H' => 'bol', 'BolC2t07346H' => 'bol', 'BolC3t13817H' => 'bol', 'BolC4t22625H' => 'bol', 'BolC4t23297H' => 'bol', 'BolC8t51278H' => 'bol', 'BolC9t58050H' => 'bol', 'BolC9t58051H' => 'bol', 'BolC9t60163H' => 'bol', 'BraA02t04712Z' => 'bra', 'BraA02t05791Z' => 'bra', 'BraA03t10483Z' => 'bra', 'BraA05t19795Z' => 'bra', 'BraA05t20276Z' => 'bra', 'BraA09t40827Z' => 'bra', 'BraA10t43750Z' => 'bra', 'BraA10t43751Z' => 'bra', 'BraA10t45370Z' => 'bra', 'C02p00400' => 'bna', 'C02p12460' => 'bna', 'C03p13680' => 'bna', 'C04p10270' => 'bna', 'C04p17500' => 'bna', 'C08p37010' => 'bna', 'C09p51880' => 'bna', 'C09p51890' => 'bna', 'C09p74300' => 'bna', 'CAN.G179.26' => 'can', 'CAN.G3384.1' => 'can', 'CAN.G394.68' => 'can', 'CAN.G907.13' => 'can', 'CANSAT11G0012' => 'cansat', 'CANSAT25G1586' => 'cansat', 'CANSAT35G0735' => 'cansat', 'CANSAT54G0556' => 'cansat', 'CANSAT64G0356' => 'cansat', 'CANSAT78G2042' => 'cansat', 'CARHR125920' => 'chi', 'CARHR131910' => 'chi', 'CARHR172390' => 'chi', 'CARHR211140' => 'chi', 'CARHR285850' => 'chi', 'CARHR285860' => 'chi', 'Carub.0004s1347' => 'cru', 'Carub.0004s1960' => 'cru', 'Carub.0005s2880' => 'cru', 'Carub.0006s0107' => 'cru', 'Carub.0008s2015' => 'cru', 'Carub.0008s2016' => 'cru', 'Carub.0008s2017' => 'cru', 'Ca_01315_v3' => 'car', 'Ca_05063_v3' => 'car', 'Ca_10231_v3' => 'car', 'Ca_10913_v3' => 'car', 'Ca_19156_v3' => 'car', 'Ca_23644_v3' => 'car', 'Ca_26735_v3' => 'car', 'Cc01_g13130' => 'ccan', 'Cc02_g21690' => 'ccan', 'Cc03_g03600' => 'ccan', 'Cc06_g02510' => 'ccan', 'CDE02G1265' => 'cde', 'CDE05G0415' => 'cde', 'CDE08G1082' => 'cde', 'Cfa005780' => 'cfa', 'Cfa011522' => 'cfa', 'Cfa011523' => 'cfa', 'Cfa015627' => 'cfa', 'Cfa017359' => 'cfa', 'Ciclev10005687m.g' => 'ccl', 'Ciclev10012173m.g' => 'ccl', 'Ciclev10021621m.g' => 'ccl', 'Ciclev10028968m.g' => 'ccl', 'Ciclev10029907m.g' => 'ccl', 'CiPaw.01G164800' => 'cil', 'CiPaw.07G083700' => 'cil', 'CiPaw.07G127000' => 'cil', 'CiPaw.07G136900' => 'cil', 'CiPaw.08G081700' => 'cil', 'CiPaw.09G194600' => 'cil', 'CiPaw.10G146500' => 'cil', 'CiPaw.13G091500' => 'cil', 'CiPaw.13G091600' => 'cil', 'ClCG00G003390' => 'cla', 'ClCG01G007220' => 'cla', 'ClCG03G001370' => 'cla', 'ClCG04G008100' => 'cla', 'ClCG06G006110' => 'cla', 'ClCG06G006130' => 'cla', 'ClCG10G021210' => 'cla', 'COL.COLO4_07648' => 'col', 'COL.COLO4_07650' => 'col', 'COL.COLO4_07651' => 'col', 'COL.COLO4_14780' => 'col', 'COL.COLO4_18546' => 'col', 'COL.COLO4_18547' => 'col', 'COL.COLO4_23103' => 'col', 'COL.COLO4_30419' => 'col', 'COL.COLO4_34232' => 'col', 'Cpa.g.sc169.20' => 'cpa', 'Cpa.g.sc57.45' => 'cpa', 'Cpa.g.sc58.124' => 'cpa', 'Cpa.g.sc58.125' => 'cpa', 'Cpa.g.sc81.118' => 'cpa', 'Cpa.g.sc81.119' => 'cpa', 'Cre12.g524700' => 'cre', 'CsaV3_1G034430' => 'csa', 'CsaV3_1G034440' => 'csa', 'CsaV3_1G034450' => 'csa', 'CsaV3_3G034830' => 'csa', 'CsaV3_4G025090' => 'csa', 'CsaV3_5G018660' => 'csa', 'CsaV3_6G038160' => 'csa', 'CSS0003447' => 'camsi', 'CSS0017840' => 'camsi', 'CSS0019260' => 'camsi', 'CSS0040375' => 'camsi', 'CSS0042533' => 'camsi', 'DCAR_005960' => 'dca', 'DCAR_012104' => 'dca', 'DCAR_012105' => 'dca', 'DCAR_012293' => 'dca', 'DCAR_015632' => 'dca', 'DCAR_024602' => 'dca', 'DCAR_028752' => 'dca', 'Dinv06261' => 'din', 'Dinv13982' => 'din', 'Dinv17029' => 'din', 'Dinv18463' => 'din', 'Dinv33181' => 'din', 'Dinv35585' => 'din', 'Dinv37161' => 'din', 'Dinv42977' => 'din', 'Dinv43122' => 'din', 'Dinv44517' => 'din', 'Duzib093G0256' => 'dzi', 'Duzib106G1254' => 'dzi', 'Duzib128G1789' => 'dzi', 'Duzib133G0633' => 'dzi', 'Duzib138G0510' => 'dzi', 'Duzib150G1084' => 'dzi', 'Duzib168G0488' => 'dzi', 'Duzib168G1523' => 'dzi', 'Duzib170G0133' => 'dzi', 'ECA234G1433' => 'eca', 'ECA236G1432' => 'eca', 'ECA236G2256' => 'eca', 'ECA236G2365' => 'eca', 'ECA236G4830' => 'eca', 'ECA248G1505' => 'eca', 'EL10Ac3g06431' => 'bvu', 'EL10Ac5g12577' => 'bvu', 'EL10Ac6g13533' => 'bvu', 'EL10Ac7g16045' => 'bvu', 'Eucgr.A01281' => 'egr', 'Eucgr.B02326' => 'egr', 'Eucgr.H03532' => 'egr', 'Eucgr.K00553' => 'egr', 'Eucgr.K03116' => 'egr', 'FAN02G3963' => 'fan', 'FAN05G0438' => 'fan', 'FAN09G2434' => 'fan', 'FAN12G3984' => 'fan', 'FAN14G0798' => 'fan', 'FAN17G0652' => 'fan', 'FAN19G1988' => 'fan', 'FAN22G0632' => 'fan', 'FAN23G0387' => 'fan', 'FAN26G1323' => 'fan', 'FAN28G0666' => 'fan', 'FvH4_1g26080' => 'fve', 'FvH4_3g36780' => 'fve', 'FvH4_4g15270' => 'fve', 'FvH4_6g13490' => 'fve', 'Glyma.01G098700' => 'gma', 'Glyma.03G065900' => 'gma', 'Glyma.03G073754' => 'gma', 'Glyma.03G073758' => 'gma', 'Glyma.03G083200' => 'gma', 'Glyma.03G225500' => 'gma', 'Glyma.05G037766' => 'gma', 'Glyma.07G133500' => 'gma', 'Glyma.10G139400' => 'gma', 'Glyma.10G248900' => 'gma', 'Glyma.11G137800' => 'gma', 'Glyma.12G061300' => 'gma', 'Glyma.13G337900' => 'gma', 'Glyma.15G036600' => 'gma', 'Glyma.18G182800' => 'gma', 'Glyma.19G222500' => 'gma', 'Glyma.20G144800' => 'gma', 'Gohir.A01G222000' => 'ghi', 'Gohir.A03G044000' => 'ghi', 'Gohir.A03G044100' => 'ghi', 'Gohir.A04G083100' => 'ghi', 'Gohir.A07G127200' => 'ghi', 'Gohir.A07G132400' => 'ghi', 'Gohir.A08G000700' => 'ghi', 'Gohir.A11G327300' => 'ghi', 'Gohir.D01G211500' => 'ghi', 'Gohir.D03G123400' => 'ghi', 'Gohir.D03G123500' => 'ghi', 'Gohir.D04G121800' => 'ghi', 'Gohir.D07G131500' => 'ghi', 'Gohir.D07G136600' => 'ghi', 'Gohir.D08G011600' => 'ghi', 'Gohir.D11G346200' => 'ghi', 'Gorai.001G142800' => 'gra', 'Gorai.001G148700' => 'gra', 'Gorai.002G257300' => 'gra', 'Gorai.003G130000' => 'gra', 'Gorai.003G130100' => 'gra', 'Gorai.004G005300' => 'gra', 'Gorai.007G376500' => 'gra', 'Gorai.012G104700' => 'gra', 'GSVIVG01017946001' => 'vvi', 'GSVIVG01024928001' => 'vvi', 'GSVIVG01028227001' => 'vvi', 'GSVIVG01034151001' => 'vvi', 'HanXRQChr05g0135031' => 'han', 'HanXRQChr05g0135041' => 'han', 'HanXRQChr05g0140021' => 'han', 'HanXRQChr06g0178981' => 'han', 'HanXRQChr07g0188251' => 'han', 'HanXRQChr08g0235311' => 'han', 'HanXRQChr09g0271011' => 'han', 'HanXRQChr10g0293321' => 'han', 'HanXRQChr13g0388171' => 'han', 'Haze_00916' => 'cav', 'Haze_05063' => 'cav', 'Haze_20814' => 'cav', 'Haze_24128' => 'cav', 'Hma1.2p1_0745F.1_g212010' => 'hma', 'Hma1.2p1_0757F.1_g213260' => 'hma', 'Hma1.2p1_0936F.1_g238840' => 'hma', 'Hma1.2p1_1735F.1_g299890' => 'hma', 'Hma1.2p1_1861F.1_g305685' => 'hma', 'HPP92_003397' => 'vpl', 'HPP92_012597' => 'vpl', 'HPP92_015520' => 'vpl', 'HPP92_015539' => 'vpl', 'HPP92_020373' => 'vpl', 'Hund04938' => 'sun', 'Hund10677' => 'sun', 'Hund11033' => 'sun', 'Hund12155' => 'sun', 'Lalb_Chr01g0022551' => 'lal', 'Lalb_Chr03g0042341' => 'lal', 'Lalb_Chr07g0192931' => 'lal', 'Lalb_Chr12g0209551' => 'lal', 'Lalb_Chr19g0125251' => 'lal', 'Lalb_Chr19g0137891' => 'lal', 'Lalb_Chr21g0304641' => 'lal', 'Lalb_Chr21g0309881' => 'lal', 'Lj1A5T12' => 'lonja', 'Lj1C148G10' => 'lonja', 'Lj2A93T83' => 'lonja', 'Lj3A738G68' => 'lonja', 'Lj3C966T1' => 'lonja', 'Lj3g0018958' => 'lja', 'Lj3g0021831' => 'lja', 'Lj3g0025443' => 'lja', 'Lj4g0026809' => 'lja', 'Lj5g0012558' => 'lja', 'Lj5g0021586' => 'lja', 'Lsat_1_v5_gn_5_156840' => 'lsa', 'Lsat_1_v5_gn_8_73460' => 'lsa', 'Lsat_1_v5_gn_8_73481' => 'lsa', 'Lsat_1_v5_gn_9_31601' => 'lsa', 'Lsat_1_v5_gn_9_77320' => 'lsa', 'Manes.01G171300' => 'mes', 'Manes.01G171400' => 'mes', 'Manes.01G236100' => 'mes', 'Manes.02G130500' => 'mes', 'Manes.02G130600' => 'mes', 'Manes.03G180200' => 'mes', 'Manes.05G007000' => 'mes', 'Manes.08G084400' => 'mes', 'Manes.09G092600' => 'mes', 'Manes.15G027900' => 'mes', 'MBI04_g40948_MAGBIO' => 'mbi', 'MBI14_g12123_MAGBIO' => 'mbi', 'MBI18_g28915_MAGBIO' => 'mbi', 'MCO09G053' => 'mco', 'MCO11G782' => 'mco', 'MCO15G215' => 'mco', 'MD03G1088500' => 'mdo', 'MD03G1088600' => 'mdo', 'MD04G1130800' => 'mdo', 'MD09G1291700' => 'mdo', 'MD11G1097500' => 'mdo', 'MD11G1097600' => 'mdo', 'MD12G1143900' => 'mdo', 'MD13G1191400' => 'mdo', 'MD16G1191500' => 'mdo', 'Medtr1g085570' => 'mtr', 'Medtr1g104610' => 'mtr', 'Medtr2g097520' => 'mtr', 'Medtr4g021800' => 'mtr', 'Medtr4g021825' => 'mtr', 'Medtr4g064270' => 'mtr', 'Medtr4g064380' => 'mtr', 'Medtr7g062150' => 'mtr', 'MELO3C003138.2' => 'cme', 'MELO3C005187.2' => 'cme', 'MELO3C009252.2' => 'cme', 'MELO3C014481.2' => 'cme', 'MELO3C020616.2' => 'cme', 'MELO3C020617.2' => 'cme', 'MELO3C020618.2' => 'cme', 'Migut.G00328' => 'egut', 'Migut.J00320' => 'egut', 'Migut.L01000' => 'egut', 'Migut.L01953' => 'egut', 'MSTRG.10253' => 'ama', 'MSTRG.19077' => 'ama', 'MSTRG.26780' => 'ama', 'MSTRG.4023' => 'ama', 'MSTRG.5655' => 'ama', 'MSTRG.9992' => 'ama', 'Nitab4.5_0000043g0310' => 'nta', 'Nitab4.5_0000463g0080' => 'nta', 'Nitab4.5_0000705g0170' => 'nta', 'Nitab4.5_0001326g0060' => 'nta', 'Nitab4.5_0001628g0030' => 'nta', 'Nitab4.5_0002103g0110' => 'nta', 'Nitab4.5_0002946g0030' => 'nta', 'Nitab4.5_0004639g0030' => 'nta', 'Nn2g11149' => 'nnu', 'Nn2g13389' => 'nnu', 'Nn4g25326' => 'nnu', 'Nn4g26290' => 'nnu', 'Nn5g29865' => 'nnu', 'Oeu004163.1' => 'oeu', 'Oeu006901.1' => 'oeu', 'Oeu010096.1' => 'oeu', 'Oeu024340.1' => 'oeu', 'Oeu048369.1' => 'oeu', 'Os01g0973000' => 'osa', 'Os03g0273800' => 'osa', 'Os03g0701200' => 'osa', 'Os03g0834050' => 'osa', 'Os07g0634400' => 'osa', 'Peaxi162Scf00092g01414' => 'pax', 'Peaxi162Scf00165g00818' => 'pax', 'Peaxi162Scf00309g00516' => 'pax', 'Peaxi162Scf00774g00218' => 'pax', 'PGR004G1824' => 'pgr', 'PGR004G2606' => 'pgr', 'PGR031G2716' => 'pgr', 'PGR102G2460' => 'pgr', 'PGR142G2599' => 'pgr', 'PGSC0003DMG400000843' => 'stu', 'PGSC0003DMG400008829' => 'stu', 'PGSC0003DMG400030418' => 'stu', 'PGSC0003DMG400031834' => 'stu', 'PGSC0003DMG401028300' => 'stu', 'PGSC0003DMG402028300' => 'stu', 'Phvul.001G219300' => 'pvu', 'Phvul.007G056000' => 'pvu', 'Phvul.007G208000' => 'pvu', 'Phvul.008G119500' => 'pvu', 'Phvul.010G011200' => 'pvu', 'Phvul.010G014800' => 'pvu', 'Phvul.011G062900' => 'pvu', 'Phvul.L007043' => 'pvu', 'Potri.001G242300' => 'ptr', 'Potri.002G185300' => 'ptr', 'Potri.006G086900' => 'ptr', 'Potri.008G151700' => 'ptr', 'Potri.009G033500' => 'ptr', 'Potri.010G089300' => 'ptr', 'Potri.014G110800' => 'ptr', 'Pp3c27_8130' => 'ppa', 'Pp3c6_27410' => 'ppa', 'PRCOL_00001659' => 'pco', 'PRCOL_00001927' => 'pco', 'PRCOL_00003649' => 'pco', 'Prupe.1G011600' => 'ppe', 'Prupe.3G000800' => 'ppe', 'Prupe.3G001100' => 'ppe', 'Prupe.6G072700' => 'ppe', 'Prupe.6G072800' => 'ppe', 'Prupe.6G257300' => 'ppe', 'Prupe.8G033000' => 'ppe', 'Psat0s2633g0080' => 'psa', 'Psat0s3396g0080' => 'psa', 'Psat0s3396g0200' => 'psa', 'Psat3g139080' => 'psa', 'Psat5g285080' => 'psa', 'Psat6g157760' => 'psa', 'Psat6g208440' => 'psa', 'Psat7g215320' => 'psa', 'Psat7g215400' => 'psa', 'Psat7g235600' => 'psa', 'Psat7g235760' => 'psa', 'PSO063G4603' => 'pso', 'PSO210G0182' => 'pso', 'PSO210G0196' => 'pso', 'PSO339G0394' => 'pso', 'PSO339G4127' => 'pso', 'PSO513G0064' => 'pso', 'PSO761G0079' => 'pso', 'QL01p031003' => 'qlo', 'QL01p031078' => 'qlo', 'QL06p003004' => 'qlo', 'QL07p048731' => 'qlo', 'QL09p037427' => 'qlo', 'RcHm_v2.0_Chr3g0466361' => 'rch', 'RcHm_v2.0_Chr3g0485571' => 'rch', 'RcHm_v2.0_Chr4g0416551' => 'rch', 'RcHm_v2.0_Chr5g0065831' => 'rch', 'Rhsim01G0230500' => 'rsi', 'Rhsim05G0194000' => 'rsi', 'Rhsim08G0250400' => 'rsi', 'Sabra02G0131000' => 'sbr', 'Sabra06G0066300' => 'sbr', 'Sabra08G0115500' => 'sbr', 'Sabra09G0023900' => 'sbr', 'Sabra10G0054000' => 'sbr', 'Sabra14G0081500' => 'sbr', 'Sabra16G0147100' => 'sbr', 'SalBow2G2957' => 'sbo', 'SalBow4G3320' => 'sbo', 'SalBow8G1894' => 'sbo', 'Sc07g0007950' => 'sci', 'Sc12g0001360' => 'sci', 'Sc13g0004330' => 'sci', 'Sc20g0005010' => 'sci', 'Sed0000361' => 'sed', 'Sed0001706' => 'sed', 'Sed0002422' => 'sed', 'Sed0004029' => 'sed', 'Sed0004602' => 'sed', 'Sed0004943' => 'sed', 'Sed0008646' => 'sed', 'Sed0023313' => 'sed', 'Sed0024843' => 'sed', 'SEGI_00081' => 'sgi', 'SEGI_00947' => 'sgi', 'SEGI_04046' => 'sgi', 'SEGI_06880' => 'sgi', 'SEGI_09736' => 'sgi', 'SEGI_12741' => 'sgi', 'SEGI_14530' => 'sgi', 'SEGI_20705' => 'sgi', 'SEGI_26088' => 'sgi', 'SEGI_28323' => 'sgi', 'SEGI_33343' => 'sgi', 'SGA_v2.0_scaffold126G33775' => 'sas', 'SGA_v2.0_scaffold2G01337' => 'sas', 'SGA_v2.0_scaffold38G15006' => 'sas', 'SGA_v2.0_scaffold39G15264' => 'sas', 'SGA_v2.0_scaffold453G51880' => 'sas', 'SHI12696' => 'shi', 'SMO367G1096' => 'smo', 'Solyc01g068630.3' => 'sly', 'Solyc05g011880.3' => 'sly', 'Solyc06g076300.3' => 'sly', 'Solyc09g010940.4' => 'sly', 'Solyc09g075890.3' => 'sly', 'Sopen01g030560' => 'spe', 'Sopen05g006630' => 'spe', 'Sopen06g032720' => 'spe', 'Sopen09g005660' => 'spe', 'Sopen09g030690' => 'spe', 'Sp4g14540' => 'spa', 'Sp4g20030' => 'spa', 'Sp5g01320' => 'spa', 'Sp6g21170' => 'spa', 'Sp6g21180' => 'spa', 'Sp6g21190' => 'spa', 'Sp6g40220' => 'spa', 'TAR362G0122' => 'tar', 'TAR362G1338' => 'tar', 'TAR369G0590' => 'tar', 'TAR371G0824' => 'tar', 'TAR622G1429' => 'tar', 'TAR623G0734' => 'tar', 'TAR625G0441' => 'tar', 'TAR629G0976' => 'tar', 'TAR633G1195' => 'tar', 'TAR636G2660' => 'tar', 'THA.LOC104799440' => 'tha', 'THA.LOC104800966' => 'tha', 'THA.LOC104806559' => 'tha', 'THA.LOC104810765' => 'tha', 'THA.LOC104816266' => 'tha', 'THA.LOC104817419' => 'tha', 'THA.LOC104827021' => 'tha', 'Thecc.01G327400' => 'tca', 'Thecc.04G229200' => 'tca', 'Thecc.05G037400' => 'tca', 'Thecc.09G318600' => 'tca', 'Thecc.09G318700' => 'tca', 'Thhalv10006238m.g' => 'esa', 'Thhalv10014321m.g' => 'esa', 'Thhalv10014335m.g' => 'esa', 'Thhalv10015826m.g' => 'esa', 'Thhalv10017107m.g' => 'esa', 'Thhalv10017180m.g' => 'esa', 'Thhalv10029339m.g' => 'esa', 'TPR.G1699' => 'tpr', 'TPR.G23609' => 'tpr', 'TPR.G3081' => 'tpr', 'TPR.G40397' => 'tpr', 'TPR.G5522' => 'tpr', 'TPR.G5618' => 'tpr', 'TPR.G5626' => 'tpr', 'TWI09G1632' => 'twi', 'TWI23G1230' => 'twi', 'TWI53G1064' => 'twi', 'TWI59G0751' => 'twi', 'TWI74G0947' => 'twi', 'TWI77G0337' => 'twi', 'TWI79G1254' => 'twi', 'unitig_0.g2341' => 'ugi', 'unitig_26.g10006' => 'ugi', 'unitig_26.g10008' => 'ugi', 'unitig_26.g9192' => 'ugi', 'vmacro14547' => 'vma', 'vmacro15333' => 'vma', 'vmacro18743' => 'vma', 'vmacro20166' => 'vma', 'VMungo0331G0523' => 'vmu', 'VMungo0331G1202' => 'vmu', 'VMungo0720G1228' => 'vmu', 'VMungo0720G1514' => 'vmu', 'VMungo1080G0169' => 'vmu', 'VMungo1127G1475' => 'vmu', 'VMungo1383G1208' => 'vmu', 'VMungo1383G1698' => 'vmu', 'Zm00001eb012270' => 'zma', 'Zm00001eb054100' => 'zma', 'Zm00001eb063350' => 'zma', 'Zm00001eb328560' => 'zma', 'Zm00001eb342820' => 'zma', 'Zm00001eb362210' => 'zma', 'Zm00001eb397730' => 'zma', 'Zm00001eb399750' => 'zma' ) $gf_id = 'HOM05D000959' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000959' ) $data_identifier = 'HOM05D000959' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 5, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 5, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 10, 'mbi' => (int) 3, 'mco' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 2, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 3, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 11, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399750' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000959', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '622', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p07100' => 'bna', 'A03p11720' => 'bna', 'A05p08300' => 'bna', 'A05p13380' => 'bna', 'A09p54130' => 'bna', 'A10p16690' => 'bna', 'A10p16700' => 'bna', 'A10p33390' => 'bna', 'Aa31LG10G16020' => 'aar', 'Aa31LG1G11810' => 'aar', 'Aa31LG1G11830' => 'aar', 'Aa31LG1G22510' => 'aar', 'Aa31LG5G4890' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5793' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2310' => 'aag', 'Actinidia08499' => 'ach', 'Actinidia11262' => 'ach', 'Actinidia23926' => 'ach', 'Actinidia34420' => 'ach', 'Actinidia36970' => 'ach', 'Ah.02g111220' => 'amhyb', 'Ah.15g097750' => 'amhyb', 'AL4G27500' => 'aly', 'AL6G11470' => 'aly', 'AL8G35950' => 'aly', 'AL8G35960' => 'aly', 'AL8G35970' => 'aly', 'Aqoxy1G00912' => 'aox', 'Aqoxy2G02253' => 'aox', 'Aqoxy2G02411' => 'aox', 'Aqoxy5G00485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BZ66YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K8ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM4FUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6BF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HFV7XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25JBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0YNNV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MAKK6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P70IT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP2Z6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V61LZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YWP64R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3S9AI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7PGHH' => 'arhy', 'AT2G32150' => 'ath', 'AT3G62040' => 'ath', 'AT5G02230' => 'ath', 'AT5G59480' => 'ath', 'AT5G59490' => 'ath', 'ATR0332G060' => 'atr', 'ATR0559G190' => 'atr', 'ATR0693G294' => 'atr', 'Atru.chr3.3975' => 'acertr', 'Atru.chr3.3976' => 'acertr', 'Atru.chr3.3977' => 'acertr', 'Atru.chr4.2498' => 'acertr', 'Atru.chr5.838' => 'acertr', 'Atru.chr8.1990' => 'acertr', 'Atru.chr8.1991' => 'acertr', 'Atru.chr8.1992' => 'acertr', 'AUR62001759' => 'cqu', 'AUR62009545' => 'cqu', 'AUR62010474' => 'cqu', 'AUR62025820' => 'cqu', 'AUR62030422' => 'cqu', 'AUR62033605' => 'cqu', 'AUR62038615' => 'cqu', 'AUR62041347' => 'cqu', 'BcaB01g04574' => 'bca', 'BcaB02g09263' => 'bca', 'BcaB02g10453' => 'bca', 'BcaB05g22513' => 'bca', 'BcaB08g36253' => 'bca', 'BcaB08g36254' => 'bca', 'BcaC01g06519' => 'bca', 'BcaC02g11889' => 'bca', 'BcaC03g14010' => 'bca', 'BcaC03g18439' => 'bca', 'BcaC04g19765' => 'bca', 'BcaC09g48432' => 'bca', 'BcaNung07302' => 'bca', 'BolC2t06040H' => 'bol', 'BolC2t07346H' => 'bol', 'BolC3t13817H' => 'bol', 'BolC4t22625H' => 'bol', 'BolC4t23297H' => 'bol', 'BolC8t51278H' => 'bol', 'BolC9t58050H' => 'bol', 'BolC9t58051H' => 'bol', 'BolC9t60163H' => 'bol', 'BraA02t04712Z' => 'bra', 'BraA02t05791Z' => 'bra', 'BraA03t10483Z' => 'bra', 'BraA05t19795Z' => 'bra', 'BraA05t20276Z' => 'bra', 'BraA09t40827Z' => 'bra', 'BraA10t43750Z' => 'bra', 'BraA10t43751Z' => 'bra', 'BraA10t45370Z' => 'bra', 'C02p00400' => 'bna', 'C02p12460' => 'bna', 'C03p13680' => 'bna', 'C04p10270' => 'bna', 'C04p17500' => 'bna', 'C08p37010' => 'bna', 'C09p51880' => 'bna', 'C09p51890' => 'bna', 'C09p74300' => 'bna', 'CAN.G179.26' => 'can', 'CAN.G3384.1' => 'can', 'CAN.G394.68' => 'can', 'CAN.G907.13' => 'can', 'CANSAT11G0012' => 'cansat', 'CANSAT25G1586' => 'cansat', 'CANSAT35G0735' => 'cansat', 'CANSAT54G0556' => 'cansat', 'CANSAT64G0356' => 'cansat', 'CANSAT78G2042' => 'cansat', 'CARHR125920' => 'chi', 'CARHR131910' => 'chi', 'CARHR172390' => 'chi', 'CARHR211140' => 'chi', 'CARHR285850' => 'chi', 'CARHR285860' => 'chi', 'Carub.0004s1347' => 'cru', 'Carub.0004s1960' => 'cru', 'Carub.0005s2880' => 'cru', 'Carub.0006s0107' => 'cru', 'Carub.0008s2015' => 'cru', 'Carub.0008s2016' => 'cru', 'Carub.0008s2017' => 'cru', 'Ca_01315_v3' => 'car', 'Ca_05063_v3' => 'car', 'Ca_10231_v3' => 'car', 'Ca_10913_v3' => 'car', 'Ca_19156_v3' => 'car', 'Ca_23644_v3' => 'car', 'Ca_26735_v3' => 'car', 'Cc01_g13130' => 'ccan', 'Cc02_g21690' => 'ccan', 'Cc03_g03600' => 'ccan', 'Cc06_g02510' => 'ccan', 'CDE02G1265' => 'cde', 'CDE05G0415' => 'cde', 'CDE08G1082' => 'cde', 'Cfa005780' => 'cfa', 'Cfa011522' => 'cfa', 'Cfa011523' => 'cfa', 'Cfa015627' => 'cfa', 'Cfa017359' => 'cfa', 'Ciclev10005687m.g' => 'ccl', 'Ciclev10012173m.g' => 'ccl', 'Ciclev10021621m.g' => 'ccl', 'Ciclev10028968m.g' => 'ccl', 'Ciclev10029907m.g' => 'ccl', 'CiPaw.01G164800' => 'cil', 'CiPaw.07G083700' => 'cil', 'CiPaw.07G127000' => 'cil', 'CiPaw.07G136900' => 'cil', 'CiPaw.08G081700' => 'cil', 'CiPaw.09G194600' => 'cil', 'CiPaw.10G146500' => 'cil', 'CiPaw.13G091500' => 'cil', 'CiPaw.13G091600' => 'cil', 'ClCG00G003390' => 'cla', 'ClCG01G007220' => 'cla', 'ClCG03G001370' => 'cla', 'ClCG04G008100' => 'cla', 'ClCG06G006110' => 'cla', 'ClCG06G006130' => 'cla', 'ClCG10G021210' => 'cla', 'COL.COLO4_07648' => 'col', 'COL.COLO4_07650' => 'col', 'COL.COLO4_07651' => 'col', 'COL.COLO4_14780' => 'col', 'COL.COLO4_18546' => 'col', 'COL.COLO4_18547' => 'col', 'COL.COLO4_23103' => 'col', 'COL.COLO4_30419' => 'col', 'COL.COLO4_34232' => 'col', 'Cpa.g.sc169.20' => 'cpa', 'Cpa.g.sc57.45' => 'cpa', 'Cpa.g.sc58.124' => 'cpa', 'Cpa.g.sc58.125' => 'cpa', 'Cpa.g.sc81.118' => 'cpa', 'Cpa.g.sc81.119' => 'cpa', 'Cre12.g524700' => 'cre', 'CsaV3_1G034430' => 'csa', 'CsaV3_1G034440' => 'csa', 'CsaV3_1G034450' => 'csa', 'CsaV3_3G034830' => 'csa', 'CsaV3_4G025090' => 'csa', 'CsaV3_5G018660' => 'csa', 'CsaV3_6G038160' => 'csa', 'CSS0003447' => 'camsi', 'CSS0017840' => 'camsi', 'CSS0019260' => 'camsi', 'CSS0040375' => 'camsi', 'CSS0042533' => 'camsi', 'DCAR_005960' => 'dca', 'DCAR_012104' => 'dca', 'DCAR_012105' => 'dca', 'DCAR_012293' => 'dca', 'DCAR_015632' => 'dca', 'DCAR_024602' => 'dca', 'DCAR_028752' => 'dca', 'Dinv06261' => 'din', 'Dinv13982' => 'din', 'Dinv17029' => 'din', 'Dinv18463' => 'din', 'Dinv33181' => 'din', 'Dinv35585' => 'din', 'Dinv37161' => 'din', 'Dinv42977' => 'din', 'Dinv43122' => 'din', 'Dinv44517' => 'din', 'Duzib093G0256' => 'dzi', 'Duzib106G1254' => 'dzi', 'Duzib128G1789' => 'dzi', 'Duzib133G0633' => 'dzi', 'Duzib138G0510' => 'dzi', 'Duzib150G1084' => 'dzi', 'Duzib168G0488' => 'dzi', 'Duzib168G1523' => 'dzi', 'Duzib170G0133' => 'dzi', 'ECA234G1433' => 'eca', 'ECA236G1432' => 'eca', 'ECA236G2256' => 'eca', 'ECA236G2365' => 'eca', 'ECA236G4830' => 'eca', 'ECA248G1505' => 'eca', 'EL10Ac3g06431' => 'bvu', 'EL10Ac5g12577' => 'bvu', 'EL10Ac6g13533' => 'bvu', 'EL10Ac7g16045' => 'bvu', 'Eucgr.A01281' => 'egr', 'Eucgr.B02326' => 'egr', 'Eucgr.H03532' => 'egr', 'Eucgr.K00553' => 'egr', 'Eucgr.K03116' => 'egr', 'FAN02G3963' => 'fan', 'FAN05G0438' => 'fan', 'FAN09G2434' => 'fan', 'FAN12G3984' => 'fan', 'FAN14G0798' => 'fan', 'FAN17G0652' => 'fan', 'FAN19G1988' => 'fan', 'FAN22G0632' => 'fan', 'FAN23G0387' => 'fan', 'FAN26G1323' => 'fan', 'FAN28G0666' => 'fan', 'FvH4_1g26080' => 'fve', 'FvH4_3g36780' => 'fve', 'FvH4_4g15270' => 'fve', 'FvH4_6g13490' => 'fve', 'Glyma.01G098700' => 'gma', 'Glyma.03G065900' => 'gma', 'Glyma.03G073754' => 'gma', 'Glyma.03G073758' => 'gma', 'Glyma.03G083200' => 'gma', 'Glyma.03G225500' => 'gma', 'Glyma.05G037766' => 'gma', 'Glyma.07G133500' => 'gma', 'Glyma.10G139400' => 'gma', 'Glyma.10G248900' => 'gma', 'Glyma.11G137800' => 'gma', 'Glyma.12G061300' => 'gma', 'Glyma.13G337900' => 'gma', 'Glyma.15G036600' => 'gma', 'Glyma.18G182800' => 'gma', 'Glyma.19G222500' => 'gma', 'Glyma.20G144800' => 'gma', 'Gohir.A01G222000' => 'ghi', 'Gohir.A03G044000' => 'ghi', 'Gohir.A03G044100' => 'ghi', 'Gohir.A04G083100' => 'ghi', 'Gohir.A07G127200' => 'ghi', 'Gohir.A07G132400' => 'ghi', 'Gohir.A08G000700' => 'ghi', 'Gohir.A11G327300' => 'ghi', 'Gohir.D01G211500' => 'ghi', 'Gohir.D03G123400' => 'ghi', 'Gohir.D03G123500' => 'ghi', 'Gohir.D04G121800' => 'ghi', 'Gohir.D07G131500' => 'ghi', 'Gohir.D07G136600' => 'ghi', 'Gohir.D08G011600' => 'ghi', 'Gohir.D11G346200' => 'ghi', 'Gorai.001G142800' => 'gra', 'Gorai.001G148700' => 'gra', 'Gorai.002G257300' => 'gra', 'Gorai.003G130000' => 'gra', 'Gorai.003G130100' => 'gra', 'Gorai.004G005300' => 'gra', 'Gorai.007G376500' => 'gra', 'Gorai.012G104700' => 'gra', 'GSVIVG01017946001' => 'vvi', 'GSVIVG01024928001' => 'vvi', 'GSVIVG01028227001' => 'vvi', 'GSVIVG01034151001' => 'vvi', 'HanXRQChr05g0135031' => 'han', 'HanXRQChr05g0135041' => 'han', 'HanXRQChr05g0140021' => 'han', 'HanXRQChr06g0178981' => 'han', 'HanXRQChr07g0188251' => 'han', 'HanXRQChr08g0235311' => 'han', 'HanXRQChr09g0271011' => 'han', 'HanXRQChr10g0293321' => 'han', 'HanXRQChr13g0388171' => 'han', 'Haze_00916' => 'cav', 'Haze_05063' => 'cav', 'Haze_20814' => 'cav', 'Haze_24128' => 'cav', 'Hma1.2p1_0745F.1_g212010' => 'hma', 'Hma1.2p1_0757F.1_g213260' => 'hma', 'Hma1.2p1_0936F.1_g238840' => 'hma', 'Hma1.2p1_1735F.1_g299890' => 'hma', 'Hma1.2p1_1861F.1_g305685' => 'hma', 'HPP92_003397' => 'vpl', 'HPP92_012597' => 'vpl', 'HPP92_015520' => 'vpl', 'HPP92_015539' => 'vpl', 'HPP92_020373' => 'vpl', 'Hund04938' => 'sun', 'Hund10677' => 'sun', 'Hund11033' => 'sun', 'Hund12155' => 'sun', 'Lalb_Chr01g0022551' => 'lal', 'Lalb_Chr03g0042341' => 'lal', 'Lalb_Chr07g0192931' => 'lal', 'Lalb_Chr12g0209551' => 'lal', 'Lalb_Chr19g0125251' => 'lal', 'Lalb_Chr19g0137891' => 'lal', 'Lalb_Chr21g0304641' => 'lal', 'Lalb_Chr21g0309881' => 'lal', 'Lj1A5T12' => 'lonja', 'Lj1C148G10' => 'lonja', 'Lj2A93T83' => 'lonja', 'Lj3A738G68' => 'lonja', 'Lj3C966T1' => 'lonja', 'Lj3g0018958' => 'lja', 'Lj3g0021831' => 'lja', 'Lj3g0025443' => 'lja', 'Lj4g0026809' => 'lja', 'Lj5g0012558' => 'lja', 'Lj5g0021586' => 'lja', 'Lsat_1_v5_gn_5_156840' => 'lsa', 'Lsat_1_v5_gn_8_73460' => 'lsa', 'Lsat_1_v5_gn_8_73481' => 'lsa', 'Lsat_1_v5_gn_9_31601' => 'lsa', 'Lsat_1_v5_gn_9_77320' => 'lsa', 'Manes.01G171300' => 'mes', 'Manes.01G171400' => 'mes', 'Manes.01G236100' => 'mes', 'Manes.02G130500' => 'mes', 'Manes.02G130600' => 'mes', 'Manes.03G180200' => 'mes', 'Manes.05G007000' => 'mes', 'Manes.08G084400' => 'mes', 'Manes.09G092600' => 'mes', 'Manes.15G027900' => 'mes', 'MBI04_g40948_MAGBIO' => 'mbi', 'MBI14_g12123_MAGBIO' => 'mbi', 'MBI18_g28915_MAGBIO' => 'mbi', 'MCO09G053' => 'mco', 'MCO11G782' => 'mco', 'MCO15G215' => 'mco', 'MD03G1088500' => 'mdo', 'MD03G1088600' => 'mdo', 'MD04G1130800' => 'mdo', 'MD09G1291700' => 'mdo', 'MD11G1097500' => 'mdo', 'MD11G1097600' => 'mdo', 'MD12G1143900' => 'mdo', 'MD13G1191400' => 'mdo', 'MD16G1191500' => 'mdo', 'Medtr1g085570' => 'mtr', 'Medtr1g104610' => 'mtr', 'Medtr2g097520' => 'mtr', 'Medtr4g021800' => 'mtr', 'Medtr4g021825' => 'mtr', 'Medtr4g064270' => 'mtr', 'Medtr4g064380' => 'mtr', 'Medtr7g062150' => 'mtr', 'MELO3C003138.2' => 'cme', 'MELO3C005187.2' => 'cme', 'MELO3C009252.2' => 'cme', 'MELO3C014481.2' => 'cme', 'MELO3C020616.2' => 'cme', 'MELO3C020617.2' => 'cme', 'MELO3C020618.2' => 'cme', 'Migut.G00328' => 'egut', 'Migut.J00320' => 'egut', 'Migut.L01000' => 'egut', 'Migut.L01953' => 'egut', 'MSTRG.10253' => 'ama', 'MSTRG.19077' => 'ama', 'MSTRG.26780' => 'ama', 'MSTRG.4023' => 'ama', 'MSTRG.5655' => 'ama', 'MSTRG.9992' => 'ama', 'Nitab4.5_0000043g0310' => 'nta', 'Nitab4.5_0000463g0080' => 'nta', 'Nitab4.5_0000705g0170' => 'nta', 'Nitab4.5_0001326g0060' => 'nta', 'Nitab4.5_0001628g0030' => 'nta', 'Nitab4.5_0002103g0110' => 'nta', 'Nitab4.5_0002946g0030' => 'nta', 'Nitab4.5_0004639g0030' => 'nta', 'Nn2g11149' => 'nnu', 'Nn2g13389' => 'nnu', 'Nn4g25326' => 'nnu', 'Nn4g26290' => 'nnu', 'Nn5g29865' => 'nnu', 'Oeu004163.1' => 'oeu', 'Oeu006901.1' => 'oeu', 'Oeu010096.1' => 'oeu', 'Oeu024340.1' => 'oeu', 'Oeu048369.1' => 'oeu', 'Os01g0973000' => 'osa', 'Os03g0273800' => 'osa', 'Os03g0701200' => 'osa', 'Os03g0834050' => 'osa', 'Os07g0634400' => 'osa', 'Peaxi162Scf00092g01414' => 'pax', 'Peaxi162Scf00165g00818' => 'pax', 'Peaxi162Scf00309g00516' => 'pax', 'Peaxi162Scf00774g00218' => 'pax', 'PGR004G1824' => 'pgr', 'PGR004G2606' => 'pgr', 'PGR031G2716' => 'pgr', 'PGR102G2460' => 'pgr', 'PGR142G2599' => 'pgr', 'PGSC0003DMG400000843' => 'stu', 'PGSC0003DMG400008829' => 'stu', 'PGSC0003DMG400030418' => 'stu', 'PGSC0003DMG400031834' => 'stu', 'PGSC0003DMG401028300' => 'stu', 'PGSC0003DMG402028300' => 'stu', 'Phvul.001G219300' => 'pvu', 'Phvul.007G056000' => 'pvu', 'Phvul.007G208000' => 'pvu', 'Phvul.008G119500' => 'pvu', 'Phvul.010G011200' => 'pvu', 'Phvul.010G014800' => 'pvu', 'Phvul.011G062900' => 'pvu', 'Phvul.L007043' => 'pvu', 'Potri.001G242300' => 'ptr', 'Potri.002G185300' => 'ptr', 'Potri.006G086900' => 'ptr', 'Potri.008G151700' => 'ptr', 'Potri.009G033500' => 'ptr', 'Potri.010G089300' => 'ptr', 'Potri.014G110800' => 'ptr', 'Pp3c27_8130' => 'ppa', 'Pp3c6_27410' => 'ppa', 'PRCOL_00001659' => 'pco', 'PRCOL_00001927' => 'pco', 'PRCOL_00003649' => 'pco', 'Prupe.1G011600' => 'ppe', 'Prupe.3G000800' => 'ppe', 'Prupe.3G001100' => 'ppe', 'Prupe.6G072700' => 'ppe', 'Prupe.6G072800' => 'ppe', 'Prupe.6G257300' => 'ppe', 'Prupe.8G033000' => 'ppe', 'Psat0s2633g0080' => 'psa', 'Psat0s3396g0080' => 'psa', 'Psat0s3396g0200' => 'psa', 'Psat3g139080' => 'psa', 'Psat5g285080' => 'psa', 'Psat6g157760' => 'psa', 'Psat6g208440' => 'psa', 'Psat7g215320' => 'psa', 'Psat7g215400' => 'psa', 'Psat7g235600' => 'psa', 'Psat7g235760' => 'psa', 'PSO063G4603' => 'pso', 'PSO210G0182' => 'pso', 'PSO210G0196' => 'pso', 'PSO339G0394' => 'pso', 'PSO339G4127' => 'pso', 'PSO513G0064' => 'pso', 'PSO761G0079' => 'pso', 'QL01p031003' => 'qlo', 'QL01p031078' => 'qlo', 'QL06p003004' => 'qlo', 'QL07p048731' => 'qlo', 'QL09p037427' => 'qlo', 'RcHm_v2.0_Chr3g0466361' => 'rch', 'RcHm_v2.0_Chr3g0485571' => 'rch', 'RcHm_v2.0_Chr4g0416551' => 'rch', 'RcHm_v2.0_Chr5g0065831' => 'rch', 'Rhsim01G0230500' => 'rsi', 'Rhsim05G0194000' => 'rsi', 'Rhsim08G0250400' => 'rsi', 'Sabra02G0131000' => 'sbr', 'Sabra06G0066300' => 'sbr', 'Sabra08G0115500' => 'sbr', 'Sabra09G0023900' => 'sbr', 'Sabra10G0054000' => 'sbr', 'Sabra14G0081500' => 'sbr', 'Sabra16G0147100' => 'sbr', 'SalBow2G2957' => 'sbo', 'SalBow4G3320' => 'sbo', 'SalBow8G1894' => 'sbo', 'Sc07g0007950' => 'sci', 'Sc12g0001360' => 'sci', 'Sc13g0004330' => 'sci', 'Sc20g0005010' => 'sci', 'Sed0000361' => 'sed', 'Sed0001706' => 'sed', 'Sed0002422' => 'sed', 'Sed0004029' => 'sed', 'Sed0004602' => 'sed', 'Sed0004943' => 'sed', 'Sed0008646' => 'sed', 'Sed0023313' => 'sed', 'Sed0024843' => 'sed', 'SEGI_00081' => 'sgi', 'SEGI_00947' => 'sgi', 'SEGI_04046' => 'sgi', 'SEGI_06880' => 'sgi', 'SEGI_09736' => 'sgi', 'SEGI_12741' => 'sgi', 'SEGI_14530' => 'sgi', 'SEGI_20705' => 'sgi', 'SEGI_26088' => 'sgi', 'SEGI_28323' => 'sgi', 'SEGI_33343' => 'sgi', 'SGA_v2.0_scaffold126G33775' => 'sas', 'SGA_v2.0_scaffold2G01337' => 'sas', 'SGA_v2.0_scaffold38G15006' => 'sas', 'SGA_v2.0_scaffold39G15264' => 'sas', 'SGA_v2.0_scaffold453G51880' => 'sas', 'SHI12696' => 'shi', 'SMO367G1096' => 'smo', 'Solyc01g068630.3' => 'sly', 'Solyc05g011880.3' => 'sly', 'Solyc06g076300.3' => 'sly', 'Solyc09g010940.4' => 'sly', 'Solyc09g075890.3' => 'sly', 'Sopen01g030560' => 'spe', 'Sopen05g006630' => 'spe', 'Sopen06g032720' => 'spe', 'Sopen09g005660' => 'spe', 'Sopen09g030690' => 'spe', 'Sp4g14540' => 'spa', 'Sp4g20030' => 'spa', 'Sp5g01320' => 'spa', 'Sp6g21170' => 'spa', 'Sp6g21180' => 'spa', 'Sp6g21190' => 'spa', 'Sp6g40220' => 'spa', 'TAR362G0122' => 'tar', 'TAR362G1338' => 'tar', 'TAR369G0590' => 'tar', 'TAR371G0824' => 'tar', 'TAR622G1429' => 'tar', 'TAR623G0734' => 'tar', 'TAR625G0441' => 'tar', 'TAR629G0976' => 'tar', 'TAR633G1195' => 'tar', 'TAR636G2660' => 'tar', 'THA.LOC104799440' => 'tha', 'THA.LOC104800966' => 'tha', 'THA.LOC104806559' => 'tha', 'THA.LOC104810765' => 'tha', 'THA.LOC104816266' => 'tha', 'THA.LOC104817419' => 'tha', 'THA.LOC104827021' => 'tha', 'Thecc.01G327400' => 'tca', 'Thecc.04G229200' => 'tca', 'Thecc.05G037400' => 'tca', 'Thecc.09G318600' => 'tca', 'Thecc.09G318700' => 'tca', 'Thhalv10006238m.g' => 'esa', 'Thhalv10014321m.g' => 'esa', 'Thhalv10014335m.g' => 'esa', 'Thhalv10015826m.g' => 'esa', 'Thhalv10017107m.g' => 'esa', 'Thhalv10017180m.g' => 'esa', 'Thhalv10029339m.g' => 'esa', 'TPR.G1699' => 'tpr', 'TPR.G23609' => 'tpr', 'TPR.G3081' => 'tpr', 'TPR.G40397' => 'tpr', 'TPR.G5522' => 'tpr', 'TPR.G5618' => 'tpr', 'TPR.G5626' => 'tpr', 'TWI09G1632' => 'twi', 'TWI23G1230' => 'twi', 'TWI53G1064' => 'twi', 'TWI59G0751' => 'twi', 'TWI74G0947' => 'twi', 'TWI77G0337' => 'twi', 'TWI79G1254' => 'twi', 'unitig_0.g2341' => 'ugi', 'unitig_26.g10006' => 'ugi', 'unitig_26.g10008' => 'ugi', 'unitig_26.g9192' => 'ugi', 'vmacro14547' => 'vma', 'vmacro15333' => 'vma', 'vmacro18743' => 'vma', 'vmacro20166' => 'vma', 'VMungo0331G0523' => 'vmu', 'VMungo0331G1202' => 'vmu', 'VMungo0720G1228' => 'vmu', 'VMungo0720G1514' => 'vmu', 'VMungo1080G0169' => 'vmu', 'VMungo1127G1475' => 'vmu', 'VMungo1383G1208' => 'vmu', 'VMungo1383G1698' => 'vmu', 'Zm00001eb012270' => 'zma', 'Zm00001eb054100' => 'zma', 'Zm00001eb063350' => 'zma', 'Zm00001eb328560' => 'zma', 'Zm00001eb342820' => 'zma', 'Zm00001eb362210' => 'zma', 'Zm00001eb397730' => 'zma', 'Zm00001eb399750' => 'zma' ), 'gf_id' => 'HOM05D000959', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000959' ), 'data_identifier' => 'HOM05D000959', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000959', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '622', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p07100' => 'bna', 'A03p11720' => 'bna', 'A05p08300' => 'bna', 'A05p13380' => 'bna', 'A09p54130' => 'bna', 'A10p16690' => 'bna', 'A10p16700' => 'bna', 'A10p33390' => 'bna', 'Aa31LG10G16020' => 'aar', 'Aa31LG1G11810' => 'aar', 'Aa31LG1G11830' => 'aar', 'Aa31LG1G22510' => 'aar', 'Aa31LG5G4890' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5793' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2310' => 'aag', 'Actinidia08499' => 'ach', 'Actinidia11262' => 'ach', 'Actinidia23926' => 'ach', 'Actinidia34420' => 'ach', 'Actinidia36970' => 'ach', 'Ah.02g111220' => 'amhyb', 'Ah.15g097750' => 'amhyb', 'AL4G27500' => 'aly', 'AL6G11470' => 'aly', 'AL8G35950' => 'aly', 'AL8G35960' => 'aly', 'AL8G35970' => 'aly', 'Aqoxy1G00912' => 'aox', 'Aqoxy2G02253' => 'aox', 'Aqoxy2G02411' => 'aox', 'Aqoxy5G00485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BZ66YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K8ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM4FUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6BF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HFV7XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25JBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0YNNV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MAKK6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P70IT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP2Z6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V61LZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YWP64R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3S9AI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7PGHH' => 'arhy', 'AT2G32150' => 'ath', 'AT3G62040' => 'ath', 'AT5G02230' => 'ath', 'AT5G59480' => 'ath', 'AT5G59490' => 'ath', 'ATR0332G060' => 'atr', 'ATR0559G190' => 'atr', 'ATR0693G294' => 'atr', 'Atru.chr3.3975' => 'acertr', 'Atru.chr3.3976' => 'acertr', 'Atru.chr3.3977' => 'acertr', 'Atru.chr4.2498' => 'acertr', 'Atru.chr5.838' => 'acertr', 'Atru.chr8.1990' => 'acertr', 'Atru.chr8.1991' => 'acertr', 'Atru.chr8.1992' => 'acertr', 'AUR62001759' => 'cqu', 'AUR62009545' => 'cqu', 'AUR62010474' => 'cqu', 'AUR62025820' => 'cqu', 'AUR62030422' => 'cqu', 'AUR62033605' => 'cqu', 'AUR62038615' => 'cqu', 'AUR62041347' => 'cqu', 'BcaB01g04574' => 'bca', 'BcaB02g09263' => 'bca', 'BcaB02g10453' => 'bca', 'BcaB05g22513' => 'bca', 'BcaB08g36253' => 'bca', 'BcaB08g36254' => 'bca', 'BcaC01g06519' => 'bca', 'BcaC02g11889' => 'bca', 'BcaC03g14010' => 'bca', 'BcaC03g18439' => 'bca', 'BcaC04g19765' => 'bca', 'BcaC09g48432' => 'bca', 'BcaNung07302' => 'bca', 'BolC2t06040H' => 'bol', 'BolC2t07346H' => 'bol', 'BolC3t13817H' => 'bol', 'BolC4t22625H' => 'bol', 'BolC4t23297H' => 'bol', 'BolC8t51278H' => 'bol', 'BolC9t58050H' => 'bol', 'BolC9t58051H' => 'bol', 'BolC9t60163H' => 'bol', 'BraA02t04712Z' => 'bra', 'BraA02t05791Z' => 'bra', 'BraA03t10483Z' => 'bra', 'BraA05t19795Z' => 'bra', 'BraA05t20276Z' => 'bra', 'BraA09t40827Z' => 'bra', 'BraA10t43750Z' => 'bra', 'BraA10t43751Z' => 'bra', 'BraA10t45370Z' => 'bra', 'C02p00400' => 'bna', 'C02p12460' => 'bna', 'C03p13680' => 'bna', 'C04p10270' => 'bna', 'C04p17500' => 'bna', 'C08p37010' => 'bna', 'C09p51880' => 'bna', 'C09p51890' => 'bna', 'C09p74300' => 'bna', 'CAN.G179.26' => 'can', 'CAN.G3384.1' => 'can', 'CAN.G394.68' => 'can', 'CAN.G907.13' => 'can', 'CANSAT11G0012' => 'cansat', 'CANSAT25G1586' => 'cansat', 'CANSAT35G0735' => 'cansat', 'CANSAT54G0556' => 'cansat', 'CANSAT64G0356' => 'cansat', 'CANSAT78G2042' => 'cansat', 'CARHR125920' => 'chi', 'CARHR131910' => 'chi', 'CARHR172390' => 'chi', 'CARHR211140' => 'chi', 'CARHR285850' => 'chi', 'CARHR285860' => 'chi', 'Carub.0004s1347' => 'cru', 'Carub.0004s1960' => 'cru', 'Carub.0005s2880' => 'cru', 'Carub.0006s0107' => 'cru', 'Carub.0008s2015' => 'cru', 'Carub.0008s2016' => 'cru', 'Carub.0008s2017' => 'cru', 'Ca_01315_v3' => 'car', 'Ca_05063_v3' => 'car', 'Ca_10231_v3' => 'car', 'Ca_10913_v3' => 'car', 'Ca_19156_v3' => 'car', 'Ca_23644_v3' => 'car', 'Ca_26735_v3' => 'car', 'Cc01_g13130' => 'ccan', 'Cc02_g21690' => 'ccan', 'Cc03_g03600' => 'ccan', 'Cc06_g02510' => 'ccan', 'CDE02G1265' => 'cde', 'CDE05G0415' => 'cde', 'CDE08G1082' => 'cde', 'Cfa005780' => 'cfa', 'Cfa011522' => 'cfa', 'Cfa011523' => 'cfa', 'Cfa015627' => 'cfa', 'Cfa017359' => 'cfa', 'Ciclev10005687m.g' => 'ccl', 'Ciclev10012173m.g' => 'ccl', 'Ciclev10021621m.g' => 'ccl', 'Ciclev10028968m.g' => 'ccl', 'Ciclev10029907m.g' => 'ccl', 'CiPaw.01G164800' => 'cil', 'CiPaw.07G083700' => 'cil', 'CiPaw.07G127000' => 'cil', 'CiPaw.07G136900' => 'cil', 'CiPaw.08G081700' => 'cil', 'CiPaw.09G194600' => 'cil', 'CiPaw.10G146500' => 'cil', 'CiPaw.13G091500' => 'cil', 'CiPaw.13G091600' => 'cil', 'ClCG00G003390' => 'cla', 'ClCG01G007220' => 'cla', 'ClCG03G001370' => 'cla', 'ClCG04G008100' => 'cla', 'ClCG06G006110' => 'cla', 'ClCG06G006130' => 'cla', 'ClCG10G021210' => 'cla', 'COL.COLO4_07648' => 'col', 'COL.COLO4_07650' => 'col', 'COL.COLO4_07651' => 'col', 'COL.COLO4_14780' => 'col', 'COL.COLO4_18546' => 'col', 'COL.COLO4_18547' => 'col', 'COL.COLO4_23103' => 'col', 'COL.COLO4_30419' => 'col', 'COL.COLO4_34232' => 'col', 'Cpa.g.sc169.20' => 'cpa', 'Cpa.g.sc57.45' => 'cpa', 'Cpa.g.sc58.124' => 'cpa', 'Cpa.g.sc58.125' => 'cpa', 'Cpa.g.sc81.118' => 'cpa', 'Cpa.g.sc81.119' => 'cpa', 'Cre12.g524700' => 'cre', 'CsaV3_1G034430' => 'csa', 'CsaV3_1G034440' => 'csa', 'CsaV3_1G034450' => 'csa', 'CsaV3_3G034830' => 'csa', 'CsaV3_4G025090' => 'csa', 'CsaV3_5G018660' => 'csa', 'CsaV3_6G038160' => 'csa', 'CSS0003447' => 'camsi', 'CSS0017840' => 'camsi', 'CSS0019260' => 'camsi', 'CSS0040375' => 'camsi', 'CSS0042533' => 'camsi', 'DCAR_005960' => 'dca', 'DCAR_012104' => 'dca', 'DCAR_012105' => 'dca', 'DCAR_012293' => 'dca', 'DCAR_015632' => 'dca', 'DCAR_024602' => 'dca', 'DCAR_028752' => 'dca', 'Dinv06261' => 'din', 'Dinv13982' => 'din', 'Dinv17029' => 'din', 'Dinv18463' => 'din', 'Dinv33181' => 'din', 'Dinv35585' => 'din', 'Dinv37161' => 'din', 'Dinv42977' => 'din', 'Dinv43122' => 'din', 'Dinv44517' => 'din', 'Duzib093G0256' => 'dzi', 'Duzib106G1254' => 'dzi', 'Duzib128G1789' => 'dzi', 'Duzib133G0633' => 'dzi', 'Duzib138G0510' => 'dzi', 'Duzib150G1084' => 'dzi', 'Duzib168G0488' => 'dzi', 'Duzib168G1523' => 'dzi', 'Duzib170G0133' => 'dzi', 'ECA234G1433' => 'eca', 'ECA236G1432' => 'eca', 'ECA236G2256' => 'eca', 'ECA236G2365' => 'eca', 'ECA236G4830' => 'eca', 'ECA248G1505' => 'eca', 'EL10Ac3g06431' => 'bvu', 'EL10Ac5g12577' => 'bvu', 'EL10Ac6g13533' => 'bvu', 'EL10Ac7g16045' => 'bvu', 'Eucgr.A01281' => 'egr', 'Eucgr.B02326' => 'egr', 'Eucgr.H03532' => 'egr', 'Eucgr.K00553' => 'egr', 'Eucgr.K03116' => 'egr', 'FAN02G3963' => 'fan', 'FAN05G0438' => 'fan', 'FAN09G2434' => 'fan', 'FAN12G3984' => 'fan', 'FAN14G0798' => 'fan', 'FAN17G0652' => 'fan', 'FAN19G1988' => 'fan', 'FAN22G0632' => 'fan', 'FAN23G0387' => 'fan', 'FAN26G1323' => 'fan', 'FAN28G0666' => 'fan', 'FvH4_1g26080' => 'fve', 'FvH4_3g36780' => 'fve', 'FvH4_4g15270' => 'fve', 'FvH4_6g13490' => 'fve', 'Glyma.01G098700' => 'gma', 'Glyma.03G065900' => 'gma', 'Glyma.03G073754' => 'gma', 'Glyma.03G073758' => 'gma', 'Glyma.03G083200' => 'gma', 'Glyma.03G225500' => 'gma', 'Glyma.05G037766' => 'gma', 'Glyma.07G133500' => 'gma', 'Glyma.10G139400' => 'gma', 'Glyma.10G248900' => 'gma', 'Glyma.11G137800' => 'gma', 'Glyma.12G061300' => 'gma', 'Glyma.13G337900' => 'gma', 'Glyma.15G036600' => 'gma', 'Glyma.18G182800' => 'gma', 'Glyma.19G222500' => 'gma', 'Glyma.20G144800' => 'gma', 'Gohir.A01G222000' => 'ghi', 'Gohir.A03G044000' => 'ghi', 'Gohir.A03G044100' => 'ghi', 'Gohir.A04G083100' => 'ghi', 'Gohir.A07G127200' => 'ghi', 'Gohir.A07G132400' => 'ghi', 'Gohir.A08G000700' => 'ghi', 'Gohir.A11G327300' => 'ghi', 'Gohir.D01G211500' => 'ghi', 'Gohir.D03G123400' => 'ghi', 'Gohir.D03G123500' => 'ghi', 'Gohir.D04G121800' => 'ghi', 'Gohir.D07G131500' => 'ghi', 'Gohir.D07G136600' => 'ghi', 'Gohir.D08G011600' => 'ghi', 'Gohir.D11G346200' => 'ghi', 'Gorai.001G142800' => 'gra', 'Gorai.001G148700' => 'gra', 'Gorai.002G257300' => 'gra', 'Gorai.003G130000' => 'gra', 'Gorai.003G130100' => 'gra', 'Gorai.004G005300' => 'gra', 'Gorai.007G376500' => 'gra', 'Gorai.012G104700' => 'gra', 'GSVIVG01017946001' => 'vvi', 'GSVIVG01024928001' => 'vvi', 'GSVIVG01028227001' => 'vvi', 'GSVIVG01034151001' => 'vvi', 'HanXRQChr05g0135031' => 'han', 'HanXRQChr05g0135041' => 'han', 'HanXRQChr05g0140021' => 'han', 'HanXRQChr06g0178981' => 'han', 'HanXRQChr07g0188251' => 'han', 'HanXRQChr08g0235311' => 'han', 'HanXRQChr09g0271011' => 'han', 'HanXRQChr10g0293321' => 'han', 'HanXRQChr13g0388171' => 'han', 'Haze_00916' => 'cav', 'Haze_05063' => 'cav', 'Haze_20814' => 'cav', 'Haze_24128' => 'cav', 'Hma1.2p1_0745F.1_g212010' => 'hma', 'Hma1.2p1_0757F.1_g213260' => 'hma', 'Hma1.2p1_0936F.1_g238840' => 'hma', 'Hma1.2p1_1735F.1_g299890' => 'hma', 'Hma1.2p1_1861F.1_g305685' => 'hma', 'HPP92_003397' => 'vpl', 'HPP92_012597' => 'vpl', 'HPP92_015520' => 'vpl', 'HPP92_015539' => 'vpl', 'HPP92_020373' => 'vpl', 'Hund04938' => 'sun', 'Hund10677' => 'sun', 'Hund11033' => 'sun', 'Hund12155' => 'sun', 'Lalb_Chr01g0022551' => 'lal', 'Lalb_Chr03g0042341' => 'lal', 'Lalb_Chr07g0192931' => 'lal', 'Lalb_Chr12g0209551' => 'lal', 'Lalb_Chr19g0125251' => 'lal', 'Lalb_Chr19g0137891' => 'lal', 'Lalb_Chr21g0304641' => 'lal', 'Lalb_Chr21g0309881' => 'lal', 'Lj1A5T12' => 'lonja', 'Lj1C148G10' => 'lonja', 'Lj2A93T83' => 'lonja', 'Lj3A738G68' => 'lonja', 'Lj3C966T1' => 'lonja', 'Lj3g0018958' => 'lja', 'Lj3g0021831' => 'lja', 'Lj3g0025443' => 'lja', 'Lj4g0026809' => 'lja', 'Lj5g0012558' => 'lja', 'Lj5g0021586' => 'lja', 'Lsat_1_v5_gn_5_156840' => 'lsa', 'Lsat_1_v5_gn_8_73460' => 'lsa', 'Lsat_1_v5_gn_8_73481' => 'lsa', 'Lsat_1_v5_gn_9_31601' => 'lsa', 'Lsat_1_v5_gn_9_77320' => 'lsa', 'Manes.01G171300' => 'mes', 'Manes.01G171400' => 'mes', 'Manes.01G236100' => 'mes', 'Manes.02G130500' => 'mes', 'Manes.02G130600' => 'mes', 'Manes.03G180200' => 'mes', 'Manes.05G007000' => 'mes', 'Manes.08G084400' => 'mes', 'Manes.09G092600' => 'mes', 'Manes.15G027900' => 'mes', 'MBI04_g40948_MAGBIO' => 'mbi', 'MBI14_g12123_MAGBIO' => 'mbi', 'MBI18_g28915_MAGBIO' => 'mbi', 'MCO09G053' => 'mco', 'MCO11G782' => 'mco', 'MCO15G215' => 'mco', 'MD03G1088500' => 'mdo', 'MD03G1088600' => 'mdo', 'MD04G1130800' => 'mdo', 'MD09G1291700' => 'mdo', 'MD11G1097500' => 'mdo', 'MD11G1097600' => 'mdo', 'MD12G1143900' => 'mdo', 'MD13G1191400' => 'mdo', 'MD16G1191500' => 'mdo', 'Medtr1g085570' => 'mtr', 'Medtr1g104610' => 'mtr', 'Medtr2g097520' => 'mtr', 'Medtr4g021800' => 'mtr', 'Medtr4g021825' => 'mtr', 'Medtr4g064270' => 'mtr', 'Medtr4g064380' => 'mtr', 'Medtr7g062150' => 'mtr', 'MELO3C003138.2' => 'cme', 'MELO3C005187.2' => 'cme', 'MELO3C009252.2' => 'cme', 'MELO3C014481.2' => 'cme', 'MELO3C020616.2' => 'cme', 'MELO3C020617.2' => 'cme', 'MELO3C020618.2' => 'cme', 'Migut.G00328' => 'egut', 'Migut.J00320' => 'egut', 'Migut.L01000' => 'egut', 'Migut.L01953' => 'egut', 'MSTRG.10253' => 'ama', 'MSTRG.19077' => 'ama', 'MSTRG.26780' => 'ama', 'MSTRG.4023' => 'ama', 'MSTRG.5655' => 'ama', 'MSTRG.9992' => 'ama', 'Nitab4.5_0000043g0310' => 'nta', 'Nitab4.5_0000463g0080' => 'nta', 'Nitab4.5_0000705g0170' => 'nta', 'Nitab4.5_0001326g0060' => 'nta', 'Nitab4.5_0001628g0030' => 'nta', 'Nitab4.5_0002103g0110' => 'nta', 'Nitab4.5_0002946g0030' => 'nta', 'Nitab4.5_0004639g0030' => 'nta', 'Nn2g11149' => 'nnu', 'Nn2g13389' => 'nnu', 'Nn4g25326' => 'nnu', 'Nn4g26290' => 'nnu', 'Nn5g29865' => 'nnu', 'Oeu004163.1' => 'oeu', 'Oeu006901.1' => 'oeu', 'Oeu010096.1' => 'oeu', 'Oeu024340.1' => 'oeu', 'Oeu048369.1' => 'oeu', 'Os01g0973000' => 'osa', 'Os03g0273800' => 'osa', 'Os03g0701200' => 'osa', 'Os03g0834050' => 'osa', 'Os07g0634400' => 'osa', 'Peaxi162Scf00092g01414' => 'pax', 'Peaxi162Scf00165g00818' => 'pax', 'Peaxi162Scf00309g00516' => 'pax', 'Peaxi162Scf00774g00218' => 'pax', 'PGR004G1824' => 'pgr', 'PGR004G2606' => 'pgr', 'PGR031G2716' => 'pgr', 'PGR102G2460' => 'pgr', 'PGR142G2599' => 'pgr', 'PGSC0003DMG400000843' => 'stu', 'PGSC0003DMG400008829' => 'stu', 'PGSC0003DMG400030418' => 'stu', 'PGSC0003DMG400031834' => 'stu', 'PGSC0003DMG401028300' => 'stu', 'PGSC0003DMG402028300' => 'stu', 'Phvul.001G219300' => 'pvu', 'Phvul.007G056000' => 'pvu', 'Phvul.007G208000' => 'pvu', 'Phvul.008G119500' => 'pvu', 'Phvul.010G011200' => 'pvu', 'Phvul.010G014800' => 'pvu', 'Phvul.011G062900' => 'pvu', 'Phvul.L007043' => 'pvu', 'Potri.001G242300' => 'ptr', 'Potri.002G185300' => 'ptr', 'Potri.006G086900' => 'ptr', 'Potri.008G151700' => 'ptr', 'Potri.009G033500' => 'ptr', 'Potri.010G089300' => 'ptr', 'Potri.014G110800' => 'ptr', 'Pp3c27_8130' => 'ppa', 'Pp3c6_27410' => 'ppa', 'PRCOL_00001659' => 'pco', 'PRCOL_00001927' => 'pco', 'PRCOL_00003649' => 'pco', 'Prupe.1G011600' => 'ppe', 'Prupe.3G000800' => 'ppe', 'Prupe.3G001100' => 'ppe', 'Prupe.6G072700' => 'ppe', 'Prupe.6G072800' => 'ppe', 'Prupe.6G257300' => 'ppe', 'Prupe.8G033000' => 'ppe', 'Psat0s2633g0080' => 'psa', 'Psat0s3396g0080' => 'psa', 'Psat0s3396g0200' => 'psa', 'Psat3g139080' => 'psa', 'Psat5g285080' => 'psa', 'Psat6g157760' => 'psa', 'Psat6g208440' => 'psa', 'Psat7g215320' => 'psa', 'Psat7g215400' => 'psa', 'Psat7g235600' => 'psa', 'Psat7g235760' => 'psa', 'PSO063G4603' => 'pso', 'PSO210G0182' => 'pso', 'PSO210G0196' => 'pso', 'PSO339G0394' => 'pso', 'PSO339G4127' => 'pso', 'PSO513G0064' => 'pso', 'PSO761G0079' => 'pso', 'QL01p031003' => 'qlo', 'QL01p031078' => 'qlo', 'QL06p003004' => 'qlo', 'QL07p048731' => 'qlo', 'QL09p037427' => 'qlo', 'RcHm_v2.0_Chr3g0466361' => 'rch', 'RcHm_v2.0_Chr3g0485571' => 'rch', 'RcHm_v2.0_Chr4g0416551' => 'rch', 'RcHm_v2.0_Chr5g0065831' => 'rch', 'Rhsim01G0230500' => 'rsi', 'Rhsim05G0194000' => 'rsi', 'Rhsim08G0250400' => 'rsi', 'Sabra02G0131000' => 'sbr', 'Sabra06G0066300' => 'sbr', 'Sabra08G0115500' => 'sbr', 'Sabra09G0023900' => 'sbr', 'Sabra10G0054000' => 'sbr', 'Sabra14G0081500' => 'sbr', 'Sabra16G0147100' => 'sbr', 'SalBow2G2957' => 'sbo', 'SalBow4G3320' => 'sbo', 'SalBow8G1894' => 'sbo', 'Sc07g0007950' => 'sci', 'Sc12g0001360' => 'sci', 'Sc13g0004330' => 'sci', 'Sc20g0005010' => 'sci', 'Sed0000361' => 'sed', 'Sed0001706' => 'sed', 'Sed0002422' => 'sed', 'Sed0004029' => 'sed', 'Sed0004602' => 'sed', 'Sed0004943' => 'sed', 'Sed0008646' => 'sed', 'Sed0023313' => 'sed', 'Sed0024843' => 'sed', 'SEGI_00081' => 'sgi', 'SEGI_00947' => 'sgi', 'SEGI_04046' => 'sgi', 'SEGI_06880' => 'sgi', 'SEGI_09736' => 'sgi', 'SEGI_12741' => 'sgi', 'SEGI_14530' => 'sgi', 'SEGI_20705' => 'sgi', 'SEGI_26088' => 'sgi', 'SEGI_28323' => 'sgi', 'SEGI_33343' => 'sgi', 'SGA_v2.0_scaffold126G33775' => 'sas', 'SGA_v2.0_scaffold2G01337' => 'sas', 'SGA_v2.0_scaffold38G15006' => 'sas', 'SGA_v2.0_scaffold39G15264' => 'sas', 'SGA_v2.0_scaffold453G51880' => 'sas', 'SHI12696' => 'shi', 'SMO367G1096' => 'smo', 'Solyc01g068630.3' => 'sly', 'Solyc05g011880.3' => 'sly', 'Solyc06g076300.3' => 'sly', 'Solyc09g010940.4' => 'sly', 'Solyc09g075890.3' => 'sly', 'Sopen01g030560' => 'spe', 'Sopen05g006630' => 'spe', 'Sopen06g032720' => 'spe', 'Sopen09g005660' => 'spe', 'Sopen09g030690' => 'spe', 'Sp4g14540' => 'spa', 'Sp4g20030' => 'spa', 'Sp5g01320' => 'spa', 'Sp6g21170' => 'spa', 'Sp6g21180' => 'spa', 'Sp6g21190' => 'spa', 'Sp6g40220' => 'spa', 'TAR362G0122' => 'tar', 'TAR362G1338' => 'tar', 'TAR369G0590' => 'tar', 'TAR371G0824' => 'tar', 'TAR622G1429' => 'tar', 'TAR623G0734' => 'tar', 'TAR625G0441' => 'tar', 'TAR629G0976' => 'tar', 'TAR633G1195' => 'tar', 'TAR636G2660' => 'tar', 'THA.LOC104799440' => 'tha', 'THA.LOC104800966' => 'tha', 'THA.LOC104806559' => 'tha', 'THA.LOC104810765' => 'tha', 'THA.LOC104816266' => 'tha', 'THA.LOC104817419' => 'tha', 'THA.LOC104827021' => 'tha', 'Thecc.01G327400' => 'tca', 'Thecc.04G229200' => 'tca', 'Thecc.05G037400' => 'tca', 'Thecc.09G318600' => 'tca', 'Thecc.09G318700' => 'tca', 'Thhalv10006238m.g' => 'esa', 'Thhalv10014321m.g' => 'esa', 'Thhalv10014335m.g' => 'esa', 'Thhalv10015826m.g' => 'esa', 'Thhalv10017107m.g' => 'esa', 'Thhalv10017180m.g' => 'esa', 'Thhalv10029339m.g' => 'esa', 'TPR.G1699' => 'tpr', 'TPR.G23609' => 'tpr', 'TPR.G3081' => 'tpr', 'TPR.G40397' => 'tpr', 'TPR.G5522' => 'tpr', 'TPR.G5618' => 'tpr', 'TPR.G5626' => 'tpr', 'TWI09G1632' => 'twi', 'TWI23G1230' => 'twi', 'TWI53G1064' => 'twi', 'TWI59G0751' => 'twi', 'TWI74G0947' => 'twi', 'TWI77G0337' => 'twi', 'TWI79G1254' => 'twi', 'unitig_0.g2341' => 'ugi', 'unitig_26.g10006' => 'ugi', 'unitig_26.g10008' => 'ugi', 'unitig_26.g9192' => 'ugi', 'vmacro14547' => 'vma', 'vmacro15333' => 'vma', 'vmacro18743' => 'vma', 'vmacro20166' => 'vma', 'VMungo0331G0523' => 'vmu', 'VMungo0331G1202' => 'vmu', 'VMungo0720G1228' => 'vmu', 'VMungo0720G1514' => 'vmu', 'VMungo1080G0169' => 'vmu', 'VMungo1127G1475' => 'vmu', 'VMungo1383G1208' => 'vmu', 'VMungo1383G1698' => 'vmu', 'Zm00001eb012270' => 'zma', 'Zm00001eb054100' => 'zma', 'Zm00001eb063350' => 'zma', 'Zm00001eb328560' => 'zma', 'Zm00001eb342820' => 'zma', 'Zm00001eb362210' => 'zma', 'Zm00001eb397730' => 'zma', 'Zm00001eb399750' => 'zma' ) $gf_id = 'HOM05D000959' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000959' ) $data_identifier = 'HOM05D000959' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 5, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 5, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 10, 'mbi' => (int) 3, 'mco' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 2, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 3, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 11, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399750' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000959', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '622', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p07100' => 'bna', 'A03p11720' => 'bna', 'A05p08300' => 'bna', 'A05p13380' => 'bna', 'A09p54130' => 'bna', 'A10p16690' => 'bna', 'A10p16700' => 'bna', 'A10p33390' => 'bna', 'Aa31LG10G16020' => 'aar', 'Aa31LG1G11810' => 'aar', 'Aa31LG1G11830' => 'aar', 'Aa31LG1G22510' => 'aar', 'Aa31LG5G4890' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5793' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2310' => 'aag', 'Actinidia08499' => 'ach', 'Actinidia11262' => 'ach', 'Actinidia23926' => 'ach', 'Actinidia34420' => 'ach', 'Actinidia36970' => 'ach', 'Ah.02g111220' => 'amhyb', 'Ah.15g097750' => 'amhyb', 'AL4G27500' => 'aly', 'AL6G11470' => 'aly', 'AL8G35950' => 'aly', 'AL8G35960' => 'aly', 'AL8G35970' => 'aly', 'Aqoxy1G00912' => 'aox', 'Aqoxy2G02253' => 'aox', 'Aqoxy2G02411' => 'aox', 'Aqoxy5G00485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BZ66YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K8ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM4FUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6BF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HFV7XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25JBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0YNNV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MAKK6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P70IT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP2Z6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V61LZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YWP64R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3S9AI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7PGHH' => 'arhy', 'AT2G32150' => 'ath', 'AT3G62040' => 'ath', 'AT5G02230' => 'ath', 'AT5G59480' => 'ath', 'AT5G59490' => 'ath', 'ATR0332G060' => 'atr', 'ATR0559G190' => 'atr', 'ATR0693G294' => 'atr', 'Atru.chr3.3975' => 'acertr', 'Atru.chr3.3976' => 'acertr', 'Atru.chr3.3977' => 'acertr', 'Atru.chr4.2498' => 'acertr', 'Atru.chr5.838' => 'acertr', 'Atru.chr8.1990' => 'acertr', 'Atru.chr8.1991' => 'acertr', 'Atru.chr8.1992' => 'acertr', 'AUR62001759' => 'cqu', 'AUR62009545' => 'cqu', 'AUR62010474' => 'cqu', 'AUR62025820' => 'cqu', 'AUR62030422' => 'cqu', 'AUR62033605' => 'cqu', 'AUR62038615' => 'cqu', 'AUR62041347' => 'cqu', 'BcaB01g04574' => 'bca', 'BcaB02g09263' => 'bca', 'BcaB02g10453' => 'bca', 'BcaB05g22513' => 'bca', 'BcaB08g36253' => 'bca', 'BcaB08g36254' => 'bca', 'BcaC01g06519' => 'bca', 'BcaC02g11889' => 'bca', 'BcaC03g14010' => 'bca', 'BcaC03g18439' => 'bca', 'BcaC04g19765' => 'bca', 'BcaC09g48432' => 'bca', 'BcaNung07302' => 'bca', 'BolC2t06040H' => 'bol', 'BolC2t07346H' => 'bol', 'BolC3t13817H' => 'bol', 'BolC4t22625H' => 'bol', 'BolC4t23297H' => 'bol', 'BolC8t51278H' => 'bol', 'BolC9t58050H' => 'bol', 'BolC9t58051H' => 'bol', 'BolC9t60163H' => 'bol', 'BraA02t04712Z' => 'bra', 'BraA02t05791Z' => 'bra', 'BraA03t10483Z' => 'bra', 'BraA05t19795Z' => 'bra', 'BraA05t20276Z' => 'bra', 'BraA09t40827Z' => 'bra', 'BraA10t43750Z' => 'bra', 'BraA10t43751Z' => 'bra', 'BraA10t45370Z' => 'bra', 'C02p00400' => 'bna', 'C02p12460' => 'bna', 'C03p13680' => 'bna', 'C04p10270' => 'bna', 'C04p17500' => 'bna', 'C08p37010' => 'bna', 'C09p51880' => 'bna', 'C09p51890' => 'bna', 'C09p74300' => 'bna', 'CAN.G179.26' => 'can', 'CAN.G3384.1' => 'can', 'CAN.G394.68' => 'can', 'CAN.G907.13' => 'can', 'CANSAT11G0012' => 'cansat', 'CANSAT25G1586' => 'cansat', 'CANSAT35G0735' => 'cansat', 'CANSAT54G0556' => 'cansat', 'CANSAT64G0356' => 'cansat', 'CANSAT78G2042' => 'cansat', 'CARHR125920' => 'chi', 'CARHR131910' => 'chi', 'CARHR172390' => 'chi', 'CARHR211140' => 'chi', 'CARHR285850' => 'chi', 'CARHR285860' => 'chi', 'Carub.0004s1347' => 'cru', 'Carub.0004s1960' => 'cru', 'Carub.0005s2880' => 'cru', 'Carub.0006s0107' => 'cru', 'Carub.0008s2015' => 'cru', 'Carub.0008s2016' => 'cru', 'Carub.0008s2017' => 'cru', 'Ca_01315_v3' => 'car', 'Ca_05063_v3' => 'car', 'Ca_10231_v3' => 'car', 'Ca_10913_v3' => 'car', 'Ca_19156_v3' => 'car', 'Ca_23644_v3' => 'car', 'Ca_26735_v3' => 'car', 'Cc01_g13130' => 'ccan', 'Cc02_g21690' => 'ccan', 'Cc03_g03600' => 'ccan', 'Cc06_g02510' => 'ccan', 'CDE02G1265' => 'cde', 'CDE05G0415' => 'cde', 'CDE08G1082' => 'cde', 'Cfa005780' => 'cfa', 'Cfa011522' => 'cfa', 'Cfa011523' => 'cfa', 'Cfa015627' => 'cfa', 'Cfa017359' => 'cfa', 'Ciclev10005687m.g' => 'ccl', 'Ciclev10012173m.g' => 'ccl', 'Ciclev10021621m.g' => 'ccl', 'Ciclev10028968m.g' => 'ccl', 'Ciclev10029907m.g' => 'ccl', 'CiPaw.01G164800' => 'cil', 'CiPaw.07G083700' => 'cil', 'CiPaw.07G127000' => 'cil', 'CiPaw.07G136900' => 'cil', 'CiPaw.08G081700' => 'cil', 'CiPaw.09G194600' => 'cil', 'CiPaw.10G146500' => 'cil', 'CiPaw.13G091500' => 'cil', 'CiPaw.13G091600' => 'cil', 'ClCG00G003390' => 'cla', 'ClCG01G007220' => 'cla', 'ClCG03G001370' => 'cla', 'ClCG04G008100' => 'cla', 'ClCG06G006110' => 'cla', 'ClCG06G006130' => 'cla', 'ClCG10G021210' => 'cla', 'COL.COLO4_07648' => 'col', 'COL.COLO4_07650' => 'col', 'COL.COLO4_07651' => 'col', 'COL.COLO4_14780' => 'col', 'COL.COLO4_18546' => 'col', 'COL.COLO4_18547' => 'col', 'COL.COLO4_23103' => 'col', 'COL.COLO4_30419' => 'col', 'COL.COLO4_34232' => 'col', 'Cpa.g.sc169.20' => 'cpa', 'Cpa.g.sc57.45' => 'cpa', 'Cpa.g.sc58.124' => 'cpa', 'Cpa.g.sc58.125' => 'cpa', 'Cpa.g.sc81.118' => 'cpa', 'Cpa.g.sc81.119' => 'cpa', 'Cre12.g524700' => 'cre', 'CsaV3_1G034430' => 'csa', 'CsaV3_1G034440' => 'csa', 'CsaV3_1G034450' => 'csa', 'CsaV3_3G034830' => 'csa', 'CsaV3_4G025090' => 'csa', 'CsaV3_5G018660' => 'csa', 'CsaV3_6G038160' => 'csa', 'CSS0003447' => 'camsi', 'CSS0017840' => 'camsi', 'CSS0019260' => 'camsi', 'CSS0040375' => 'camsi', 'CSS0042533' => 'camsi', 'DCAR_005960' => 'dca', 'DCAR_012104' => 'dca', 'DCAR_012105' => 'dca', 'DCAR_012293' => 'dca', 'DCAR_015632' => 'dca', 'DCAR_024602' => 'dca', 'DCAR_028752' => 'dca', 'Dinv06261' => 'din', 'Dinv13982' => 'din', 'Dinv17029' => 'din', 'Dinv18463' => 'din', 'Dinv33181' => 'din', 'Dinv35585' => 'din', 'Dinv37161' => 'din', 'Dinv42977' => 'din', 'Dinv43122' => 'din', 'Dinv44517' => 'din', 'Duzib093G0256' => 'dzi', 'Duzib106G1254' => 'dzi', 'Duzib128G1789' => 'dzi', 'Duzib133G0633' => 'dzi', 'Duzib138G0510' => 'dzi', 'Duzib150G1084' => 'dzi', 'Duzib168G0488' => 'dzi', 'Duzib168G1523' => 'dzi', 'Duzib170G0133' => 'dzi', 'ECA234G1433' => 'eca', 'ECA236G1432' => 'eca', 'ECA236G2256' => 'eca', 'ECA236G2365' => 'eca', 'ECA236G4830' => 'eca', 'ECA248G1505' => 'eca', 'EL10Ac3g06431' => 'bvu', 'EL10Ac5g12577' => 'bvu', 'EL10Ac6g13533' => 'bvu', 'EL10Ac7g16045' => 'bvu', 'Eucgr.A01281' => 'egr', 'Eucgr.B02326' => 'egr', 'Eucgr.H03532' => 'egr', 'Eucgr.K00553' => 'egr', 'Eucgr.K03116' => 'egr', 'FAN02G3963' => 'fan', 'FAN05G0438' => 'fan', 'FAN09G2434' => 'fan', 'FAN12G3984' => 'fan', 'FAN14G0798' => 'fan', 'FAN17G0652' => 'fan', 'FAN19G1988' => 'fan', 'FAN22G0632' => 'fan', 'FAN23G0387' => 'fan', 'FAN26G1323' => 'fan', 'FAN28G0666' => 'fan', 'FvH4_1g26080' => 'fve', 'FvH4_3g36780' => 'fve', 'FvH4_4g15270' => 'fve', 'FvH4_6g13490' => 'fve', 'Glyma.01G098700' => 'gma', 'Glyma.03G065900' => 'gma', 'Glyma.03G073754' => 'gma', 'Glyma.03G073758' => 'gma', 'Glyma.03G083200' => 'gma', 'Glyma.03G225500' => 'gma', 'Glyma.05G037766' => 'gma', 'Glyma.07G133500' => 'gma', 'Glyma.10G139400' => 'gma', 'Glyma.10G248900' => 'gma', 'Glyma.11G137800' => 'gma', 'Glyma.12G061300' => 'gma', 'Glyma.13G337900' => 'gma', 'Glyma.15G036600' => 'gma', 'Glyma.18G182800' => 'gma', 'Glyma.19G222500' => 'gma', 'Glyma.20G144800' => 'gma', 'Gohir.A01G222000' => 'ghi', 'Gohir.A03G044000' => 'ghi', 'Gohir.A03G044100' => 'ghi', 'Gohir.A04G083100' => 'ghi', 'Gohir.A07G127200' => 'ghi', 'Gohir.A07G132400' => 'ghi', 'Gohir.A08G000700' => 'ghi', 'Gohir.A11G327300' => 'ghi', 'Gohir.D01G211500' => 'ghi', 'Gohir.D03G123400' => 'ghi', 'Gohir.D03G123500' => 'ghi', 'Gohir.D04G121800' => 'ghi', 'Gohir.D07G131500' => 'ghi', 'Gohir.D07G136600' => 'ghi', 'Gohir.D08G011600' => 'ghi', 'Gohir.D11G346200' => 'ghi', 'Gorai.001G142800' => 'gra', 'Gorai.001G148700' => 'gra', 'Gorai.002G257300' => 'gra', 'Gorai.003G130000' => 'gra', 'Gorai.003G130100' => 'gra', 'Gorai.004G005300' => 'gra', 'Gorai.007G376500' => 'gra', 'Gorai.012G104700' => 'gra', 'GSVIVG01017946001' => 'vvi', 'GSVIVG01024928001' => 'vvi', 'GSVIVG01028227001' => 'vvi', 'GSVIVG01034151001' => 'vvi', 'HanXRQChr05g0135031' => 'han', 'HanXRQChr05g0135041' => 'han', 'HanXRQChr05g0140021' => 'han', 'HanXRQChr06g0178981' => 'han', 'HanXRQChr07g0188251' => 'han', 'HanXRQChr08g0235311' => 'han', 'HanXRQChr09g0271011' => 'han', 'HanXRQChr10g0293321' => 'han', 'HanXRQChr13g0388171' => 'han', 'Haze_00916' => 'cav', 'Haze_05063' => 'cav', 'Haze_20814' => 'cav', 'Haze_24128' => 'cav', 'Hma1.2p1_0745F.1_g212010' => 'hma', 'Hma1.2p1_0757F.1_g213260' => 'hma', 'Hma1.2p1_0936F.1_g238840' => 'hma', 'Hma1.2p1_1735F.1_g299890' => 'hma', 'Hma1.2p1_1861F.1_g305685' => 'hma', 'HPP92_003397' => 'vpl', 'HPP92_012597' => 'vpl', 'HPP92_015520' => 'vpl', 'HPP92_015539' => 'vpl', 'HPP92_020373' => 'vpl', 'Hund04938' => 'sun', 'Hund10677' => 'sun', 'Hund11033' => 'sun', 'Hund12155' => 'sun', 'Lalb_Chr01g0022551' => 'lal', 'Lalb_Chr03g0042341' => 'lal', 'Lalb_Chr07g0192931' => 'lal', 'Lalb_Chr12g0209551' => 'lal', 'Lalb_Chr19g0125251' => 'lal', 'Lalb_Chr19g0137891' => 'lal', 'Lalb_Chr21g0304641' => 'lal', 'Lalb_Chr21g0309881' => 'lal', 'Lj1A5T12' => 'lonja', 'Lj1C148G10' => 'lonja', 'Lj2A93T83' => 'lonja', 'Lj3A738G68' => 'lonja', 'Lj3C966T1' => 'lonja', 'Lj3g0018958' => 'lja', 'Lj3g0021831' => 'lja', 'Lj3g0025443' => 'lja', 'Lj4g0026809' => 'lja', 'Lj5g0012558' => 'lja', 'Lj5g0021586' => 'lja', 'Lsat_1_v5_gn_5_156840' => 'lsa', 'Lsat_1_v5_gn_8_73460' => 'lsa', 'Lsat_1_v5_gn_8_73481' => 'lsa', 'Lsat_1_v5_gn_9_31601' => 'lsa', 'Lsat_1_v5_gn_9_77320' => 'lsa', 'Manes.01G171300' => 'mes', 'Manes.01G171400' => 'mes', 'Manes.01G236100' => 'mes', 'Manes.02G130500' => 'mes', 'Manes.02G130600' => 'mes', 'Manes.03G180200' => 'mes', 'Manes.05G007000' => 'mes', 'Manes.08G084400' => 'mes', 'Manes.09G092600' => 'mes', 'Manes.15G027900' => 'mes', 'MBI04_g40948_MAGBIO' => 'mbi', 'MBI14_g12123_MAGBIO' => 'mbi', 'MBI18_g28915_MAGBIO' => 'mbi', 'MCO09G053' => 'mco', 'MCO11G782' => 'mco', 'MCO15G215' => 'mco', 'MD03G1088500' => 'mdo', 'MD03G1088600' => 'mdo', 'MD04G1130800' => 'mdo', 'MD09G1291700' => 'mdo', 'MD11G1097500' => 'mdo', 'MD11G1097600' => 'mdo', 'MD12G1143900' => 'mdo', 'MD13G1191400' => 'mdo', 'MD16G1191500' => 'mdo', 'Medtr1g085570' => 'mtr', 'Medtr1g104610' => 'mtr', 'Medtr2g097520' => 'mtr', 'Medtr4g021800' => 'mtr', 'Medtr4g021825' => 'mtr', 'Medtr4g064270' => 'mtr', 'Medtr4g064380' => 'mtr', 'Medtr7g062150' => 'mtr', 'MELO3C003138.2' => 'cme', 'MELO3C005187.2' => 'cme', 'MELO3C009252.2' => 'cme', 'MELO3C014481.2' => 'cme', 'MELO3C020616.2' => 'cme', 'MELO3C020617.2' => 'cme', 'MELO3C020618.2' => 'cme', 'Migut.G00328' => 'egut', 'Migut.J00320' => 'egut', 'Migut.L01000' => 'egut', 'Migut.L01953' => 'egut', 'MSTRG.10253' => 'ama', 'MSTRG.19077' => 'ama', 'MSTRG.26780' => 'ama', 'MSTRG.4023' => 'ama', 'MSTRG.5655' => 'ama', 'MSTRG.9992' => 'ama', 'Nitab4.5_0000043g0310' => 'nta', 'Nitab4.5_0000463g0080' => 'nta', 'Nitab4.5_0000705g0170' => 'nta', 'Nitab4.5_0001326g0060' => 'nta', 'Nitab4.5_0001628g0030' => 'nta', 'Nitab4.5_0002103g0110' => 'nta', 'Nitab4.5_0002946g0030' => 'nta', 'Nitab4.5_0004639g0030' => 'nta', 'Nn2g11149' => 'nnu', 'Nn2g13389' => 'nnu', 'Nn4g25326' => 'nnu', 'Nn4g26290' => 'nnu', 'Nn5g29865' => 'nnu', 'Oeu004163.1' => 'oeu', 'Oeu006901.1' => 'oeu', 'Oeu010096.1' => 'oeu', 'Oeu024340.1' => 'oeu', 'Oeu048369.1' => 'oeu', 'Os01g0973000' => 'osa', 'Os03g0273800' => 'osa', 'Os03g0701200' => 'osa', 'Os03g0834050' => 'osa', 'Os07g0634400' => 'osa', 'Peaxi162Scf00092g01414' => 'pax', 'Peaxi162Scf00165g00818' => 'pax', 'Peaxi162Scf00309g00516' => 'pax', 'Peaxi162Scf00774g00218' => 'pax', 'PGR004G1824' => 'pgr', 'PGR004G2606' => 'pgr', 'PGR031G2716' => 'pgr', 'PGR102G2460' => 'pgr', 'PGR142G2599' => 'pgr', 'PGSC0003DMG400000843' => 'stu', 'PGSC0003DMG400008829' => 'stu', 'PGSC0003DMG400030418' => 'stu', 'PGSC0003DMG400031834' => 'stu', 'PGSC0003DMG401028300' => 'stu', 'PGSC0003DMG402028300' => 'stu', 'Phvul.001G219300' => 'pvu', 'Phvul.007G056000' => 'pvu', 'Phvul.007G208000' => 'pvu', 'Phvul.008G119500' => 'pvu', 'Phvul.010G011200' => 'pvu', 'Phvul.010G014800' => 'pvu', 'Phvul.011G062900' => 'pvu', 'Phvul.L007043' => 'pvu', 'Potri.001G242300' => 'ptr', 'Potri.002G185300' => 'ptr', 'Potri.006G086900' => 'ptr', 'Potri.008G151700' => 'ptr', 'Potri.009G033500' => 'ptr', 'Potri.010G089300' => 'ptr', 'Potri.014G110800' => 'ptr', 'Pp3c27_8130' => 'ppa', 'Pp3c6_27410' => 'ppa', 'PRCOL_00001659' => 'pco', 'PRCOL_00001927' => 'pco', 'PRCOL_00003649' => 'pco', 'Prupe.1G011600' => 'ppe', 'Prupe.3G000800' => 'ppe', 'Prupe.3G001100' => 'ppe', 'Prupe.6G072700' => 'ppe', 'Prupe.6G072800' => 'ppe', 'Prupe.6G257300' => 'ppe', 'Prupe.8G033000' => 'ppe', 'Psat0s2633g0080' => 'psa', 'Psat0s3396g0080' => 'psa', 'Psat0s3396g0200' => 'psa', 'Psat3g139080' => 'psa', 'Psat5g285080' => 'psa', 'Psat6g157760' => 'psa', 'Psat6g208440' => 'psa', 'Psat7g215320' => 'psa', 'Psat7g215400' => 'psa', 'Psat7g235600' => 'psa', 'Psat7g235760' => 'psa', 'PSO063G4603' => 'pso', 'PSO210G0182' => 'pso', 'PSO210G0196' => 'pso', 'PSO339G0394' => 'pso', 'PSO339G4127' => 'pso', 'PSO513G0064' => 'pso', 'PSO761G0079' => 'pso', 'QL01p031003' => 'qlo', 'QL01p031078' => 'qlo', 'QL06p003004' => 'qlo', 'QL07p048731' => 'qlo', 'QL09p037427' => 'qlo', 'RcHm_v2.0_Chr3g0466361' => 'rch', 'RcHm_v2.0_Chr3g0485571' => 'rch', 'RcHm_v2.0_Chr4g0416551' => 'rch', 'RcHm_v2.0_Chr5g0065831' => 'rch', 'Rhsim01G0230500' => 'rsi', 'Rhsim05G0194000' => 'rsi', 'Rhsim08G0250400' => 'rsi', 'Sabra02G0131000' => 'sbr', 'Sabra06G0066300' => 'sbr', 'Sabra08G0115500' => 'sbr', 'Sabra09G0023900' => 'sbr', 'Sabra10G0054000' => 'sbr', 'Sabra14G0081500' => 'sbr', 'Sabra16G0147100' => 'sbr', 'SalBow2G2957' => 'sbo', 'SalBow4G3320' => 'sbo', 'SalBow8G1894' => 'sbo', 'Sc07g0007950' => 'sci', 'Sc12g0001360' => 'sci', 'Sc13g0004330' => 'sci', 'Sc20g0005010' => 'sci', 'Sed0000361' => 'sed', 'Sed0001706' => 'sed', 'Sed0002422' => 'sed', 'Sed0004029' => 'sed', 'Sed0004602' => 'sed', 'Sed0004943' => 'sed', 'Sed0008646' => 'sed', 'Sed0023313' => 'sed', 'Sed0024843' => 'sed', 'SEGI_00081' => 'sgi', 'SEGI_00947' => 'sgi', 'SEGI_04046' => 'sgi', 'SEGI_06880' => 'sgi', 'SEGI_09736' => 'sgi', 'SEGI_12741' => 'sgi', 'SEGI_14530' => 'sgi', 'SEGI_20705' => 'sgi', 'SEGI_26088' => 'sgi', 'SEGI_28323' => 'sgi', 'SEGI_33343' => 'sgi', 'SGA_v2.0_scaffold126G33775' => 'sas', 'SGA_v2.0_scaffold2G01337' => 'sas', 'SGA_v2.0_scaffold38G15006' => 'sas', 'SGA_v2.0_scaffold39G15264' => 'sas', 'SGA_v2.0_scaffold453G51880' => 'sas', 'SHI12696' => 'shi', 'SMO367G1096' => 'smo', 'Solyc01g068630.3' => 'sly', 'Solyc05g011880.3' => 'sly', 'Solyc06g076300.3' => 'sly', 'Solyc09g010940.4' => 'sly', 'Solyc09g075890.3' => 'sly', 'Sopen01g030560' => 'spe', 'Sopen05g006630' => 'spe', 'Sopen06g032720' => 'spe', 'Sopen09g005660' => 'spe', 'Sopen09g030690' => 'spe', 'Sp4g14540' => 'spa', 'Sp4g20030' => 'spa', 'Sp5g01320' => 'spa', 'Sp6g21170' => 'spa', 'Sp6g21180' => 'spa', 'Sp6g21190' => 'spa', 'Sp6g40220' => 'spa', 'TAR362G0122' => 'tar', 'TAR362G1338' => 'tar', 'TAR369G0590' => 'tar', 'TAR371G0824' => 'tar', 'TAR622G1429' => 'tar', 'TAR623G0734' => 'tar', 'TAR625G0441' => 'tar', 'TAR629G0976' => 'tar', 'TAR633G1195' => 'tar', 'TAR636G2660' => 'tar', 'THA.LOC104799440' => 'tha', 'THA.LOC104800966' => 'tha', 'THA.LOC104806559' => 'tha', 'THA.LOC104810765' => 'tha', 'THA.LOC104816266' => 'tha', 'THA.LOC104817419' => 'tha', 'THA.LOC104827021' => 'tha', 'Thecc.01G327400' => 'tca', 'Thecc.04G229200' => 'tca', 'Thecc.05G037400' => 'tca', 'Thecc.09G318600' => 'tca', 'Thecc.09G318700' => 'tca', 'Thhalv10006238m.g' => 'esa', 'Thhalv10014321m.g' => 'esa', 'Thhalv10014335m.g' => 'esa', 'Thhalv10015826m.g' => 'esa', 'Thhalv10017107m.g' => 'esa', 'Thhalv10017180m.g' => 'esa', 'Thhalv10029339m.g' => 'esa', 'TPR.G1699' => 'tpr', 'TPR.G23609' => 'tpr', 'TPR.G3081' => 'tpr', 'TPR.G40397' => 'tpr', 'TPR.G5522' => 'tpr', 'TPR.G5618' => 'tpr', 'TPR.G5626' => 'tpr', 'TWI09G1632' => 'twi', 'TWI23G1230' => 'twi', 'TWI53G1064' => 'twi', 'TWI59G0751' => 'twi', 'TWI74G0947' => 'twi', 'TWI77G0337' => 'twi', 'TWI79G1254' => 'twi', 'unitig_0.g2341' => 'ugi', 'unitig_26.g10006' => 'ugi', 'unitig_26.g10008' => 'ugi', 'unitig_26.g9192' => 'ugi', 'vmacro14547' => 'vma', 'vmacro15333' => 'vma', 'vmacro18743' => 'vma', 'vmacro20166' => 'vma', 'VMungo0331G0523' => 'vmu', 'VMungo0331G1202' => 'vmu', 'VMungo0720G1228' => 'vmu', 'VMungo0720G1514' => 'vmu', 'VMungo1080G0169' => 'vmu', 'VMungo1127G1475' => 'vmu', 'VMungo1383G1208' => 'vmu', 'VMungo1383G1698' => 'vmu', 'Zm00001eb012270' => 'zma', 'Zm00001eb054100' => 'zma', 'Zm00001eb063350' => 'zma', 'Zm00001eb328560' => 'zma', 'Zm00001eb342820' => 'zma', 'Zm00001eb362210' => 'zma', 'Zm00001eb397730' => 'zma', 'Zm00001eb399750' => 'zma' ), 'gf_id' => 'HOM05D000959', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000959' ), 'data_identifier' => 'HOM05D000959', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000959', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '622', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p07100' => 'bna', 'A03p11720' => 'bna', 'A05p08300' => 'bna', 'A05p13380' => 'bna', 'A09p54130' => 'bna', 'A10p16690' => 'bna', 'A10p16700' => 'bna', 'A10p33390' => 'bna', 'Aa31LG10G16020' => 'aar', 'Aa31LG1G11810' => 'aar', 'Aa31LG1G11830' => 'aar', 'Aa31LG1G22510' => 'aar', 'Aa31LG5G4890' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5793' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2310' => 'aag', 'Actinidia08499' => 'ach', 'Actinidia11262' => 'ach', 'Actinidia23926' => 'ach', 'Actinidia34420' => 'ach', 'Actinidia36970' => 'ach', 'Ah.02g111220' => 'amhyb', 'Ah.15g097750' => 'amhyb', 'AL4G27500' => 'aly', 'AL6G11470' => 'aly', 'AL8G35950' => 'aly', 'AL8G35960' => 'aly', 'AL8G35970' => 'aly', 'Aqoxy1G00912' => 'aox', 'Aqoxy2G02253' => 'aox', 'Aqoxy2G02411' => 'aox', 'Aqoxy5G00485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BZ66YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K8ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM4FUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6BF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HFV7XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25JBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0YNNV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MAKK6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P70IT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP2Z6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V61LZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YWP64R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3S9AI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7PGHH' => 'arhy', 'AT2G32150' => 'ath', 'AT3G62040' => 'ath', 'AT5G02230' => 'ath', 'AT5G59480' => 'ath', 'AT5G59490' => 'ath', 'ATR0332G060' => 'atr', 'ATR0559G190' => 'atr', 'ATR0693G294' => 'atr', 'Atru.chr3.3975' => 'acertr', 'Atru.chr3.3976' => 'acertr', 'Atru.chr3.3977' => 'acertr', 'Atru.chr4.2498' => 'acertr', 'Atru.chr5.838' => 'acertr', 'Atru.chr8.1990' => 'acertr', 'Atru.chr8.1991' => 'acertr', 'Atru.chr8.1992' => 'acertr', 'AUR62001759' => 'cqu', 'AUR62009545' => 'cqu', 'AUR62010474' => 'cqu', 'AUR62025820' => 'cqu', 'AUR62030422' => 'cqu', 'AUR62033605' => 'cqu', 'AUR62038615' => 'cqu', 'AUR62041347' => 'cqu', 'BcaB01g04574' => 'bca', 'BcaB02g09263' => 'bca', 'BcaB02g10453' => 'bca', 'BcaB05g22513' => 'bca', 'BcaB08g36253' => 'bca', 'BcaB08g36254' => 'bca', 'BcaC01g06519' => 'bca', 'BcaC02g11889' => 'bca', 'BcaC03g14010' => 'bca', 'BcaC03g18439' => 'bca', 'BcaC04g19765' => 'bca', 'BcaC09g48432' => 'bca', 'BcaNung07302' => 'bca', 'BolC2t06040H' => 'bol', 'BolC2t07346H' => 'bol', 'BolC3t13817H' => 'bol', 'BolC4t22625H' => 'bol', 'BolC4t23297H' => 'bol', 'BolC8t51278H' => 'bol', 'BolC9t58050H' => 'bol', 'BolC9t58051H' => 'bol', 'BolC9t60163H' => 'bol', 'BraA02t04712Z' => 'bra', 'BraA02t05791Z' => 'bra', 'BraA03t10483Z' => 'bra', 'BraA05t19795Z' => 'bra', 'BraA05t20276Z' => 'bra', 'BraA09t40827Z' => 'bra', 'BraA10t43750Z' => 'bra', 'BraA10t43751Z' => 'bra', 'BraA10t45370Z' => 'bra', 'C02p00400' => 'bna', 'C02p12460' => 'bna', 'C03p13680' => 'bna', 'C04p10270' => 'bna', 'C04p17500' => 'bna', 'C08p37010' => 'bna', 'C09p51880' => 'bna', 'C09p51890' => 'bna', 'C09p74300' => 'bna', 'CAN.G179.26' => 'can', 'CAN.G3384.1' => 'can', 'CAN.G394.68' => 'can', 'CAN.G907.13' => 'can', 'CANSAT11G0012' => 'cansat', 'CANSAT25G1586' => 'cansat', 'CANSAT35G0735' => 'cansat', 'CANSAT54G0556' => 'cansat', 'CANSAT64G0356' => 'cansat', 'CANSAT78G2042' => 'cansat', 'CARHR125920' => 'chi', 'CARHR131910' => 'chi', 'CARHR172390' => 'chi', 'CARHR211140' => 'chi', 'CARHR285850' => 'chi', 'CARHR285860' => 'chi', 'Carub.0004s1347' => 'cru', 'Carub.0004s1960' => 'cru', 'Carub.0005s2880' => 'cru', 'Carub.0006s0107' => 'cru', 'Carub.0008s2015' => 'cru', 'Carub.0008s2016' => 'cru', 'Carub.0008s2017' => 'cru', 'Ca_01315_v3' => 'car', 'Ca_05063_v3' => 'car', 'Ca_10231_v3' => 'car', 'Ca_10913_v3' => 'car', 'Ca_19156_v3' => 'car', 'Ca_23644_v3' => 'car', 'Ca_26735_v3' => 'car', 'Cc01_g13130' => 'ccan', 'Cc02_g21690' => 'ccan', 'Cc03_g03600' => 'ccan', 'Cc06_g02510' => 'ccan', 'CDE02G1265' => 'cde', 'CDE05G0415' => 'cde', 'CDE08G1082' => 'cde', 'Cfa005780' => 'cfa', 'Cfa011522' => 'cfa', 'Cfa011523' => 'cfa', 'Cfa015627' => 'cfa', 'Cfa017359' => 'cfa', 'Ciclev10005687m.g' => 'ccl', 'Ciclev10012173m.g' => 'ccl', 'Ciclev10021621m.g' => 'ccl', 'Ciclev10028968m.g' => 'ccl', 'Ciclev10029907m.g' => 'ccl', 'CiPaw.01G164800' => 'cil', 'CiPaw.07G083700' => 'cil', 'CiPaw.07G127000' => 'cil', 'CiPaw.07G136900' => 'cil', 'CiPaw.08G081700' => 'cil', 'CiPaw.09G194600' => 'cil', 'CiPaw.10G146500' => 'cil', 'CiPaw.13G091500' => 'cil', 'CiPaw.13G091600' => 'cil', 'ClCG00G003390' => 'cla', 'ClCG01G007220' => 'cla', 'ClCG03G001370' => 'cla', 'ClCG04G008100' => 'cla', 'ClCG06G006110' => 'cla', 'ClCG06G006130' => 'cla', 'ClCG10G021210' => 'cla', 'COL.COLO4_07648' => 'col', 'COL.COLO4_07650' => 'col', 'COL.COLO4_07651' => 'col', 'COL.COLO4_14780' => 'col', 'COL.COLO4_18546' => 'col', 'COL.COLO4_18547' => 'col', 'COL.COLO4_23103' => 'col', 'COL.COLO4_30419' => 'col', 'COL.COLO4_34232' => 'col', 'Cpa.g.sc169.20' => 'cpa', 'Cpa.g.sc57.45' => 'cpa', 'Cpa.g.sc58.124' => 'cpa', 'Cpa.g.sc58.125' => 'cpa', 'Cpa.g.sc81.118' => 'cpa', 'Cpa.g.sc81.119' => 'cpa', 'Cre12.g524700' => 'cre', 'CsaV3_1G034430' => 'csa', 'CsaV3_1G034440' => 'csa', 'CsaV3_1G034450' => 'csa', 'CsaV3_3G034830' => 'csa', 'CsaV3_4G025090' => 'csa', 'CsaV3_5G018660' => 'csa', 'CsaV3_6G038160' => 'csa', 'CSS0003447' => 'camsi', 'CSS0017840' => 'camsi', 'CSS0019260' => 'camsi', 'CSS0040375' => 'camsi', 'CSS0042533' => 'camsi', 'DCAR_005960' => 'dca', 'DCAR_012104' => 'dca', 'DCAR_012105' => 'dca', 'DCAR_012293' => 'dca', 'DCAR_015632' => 'dca', 'DCAR_024602' => 'dca', 'DCAR_028752' => 'dca', 'Dinv06261' => 'din', 'Dinv13982' => 'din', 'Dinv17029' => 'din', 'Dinv18463' => 'din', 'Dinv33181' => 'din', 'Dinv35585' => 'din', 'Dinv37161' => 'din', 'Dinv42977' => 'din', 'Dinv43122' => 'din', 'Dinv44517' => 'din', 'Duzib093G0256' => 'dzi', 'Duzib106G1254' => 'dzi', 'Duzib128G1789' => 'dzi', 'Duzib133G0633' => 'dzi', 'Duzib138G0510' => 'dzi', 'Duzib150G1084' => 'dzi', 'Duzib168G0488' => 'dzi', 'Duzib168G1523' => 'dzi', 'Duzib170G0133' => 'dzi', 'ECA234G1433' => 'eca', 'ECA236G1432' => 'eca', 'ECA236G2256' => 'eca', 'ECA236G2365' => 'eca', 'ECA236G4830' => 'eca', 'ECA248G1505' => 'eca', 'EL10Ac3g06431' => 'bvu', 'EL10Ac5g12577' => 'bvu', 'EL10Ac6g13533' => 'bvu', 'EL10Ac7g16045' => 'bvu', 'Eucgr.A01281' => 'egr', 'Eucgr.B02326' => 'egr', 'Eucgr.H03532' => 'egr', 'Eucgr.K00553' => 'egr', 'Eucgr.K03116' => 'egr', 'FAN02G3963' => 'fan', 'FAN05G0438' => 'fan', 'FAN09G2434' => 'fan', 'FAN12G3984' => 'fan', 'FAN14G0798' => 'fan', 'FAN17G0652' => 'fan', 'FAN19G1988' => 'fan', 'FAN22G0632' => 'fan', 'FAN23G0387' => 'fan', 'FAN26G1323' => 'fan', 'FAN28G0666' => 'fan', 'FvH4_1g26080' => 'fve', 'FvH4_3g36780' => 'fve', 'FvH4_4g15270' => 'fve', 'FvH4_6g13490' => 'fve', 'Glyma.01G098700' => 'gma', 'Glyma.03G065900' => 'gma', 'Glyma.03G073754' => 'gma', 'Glyma.03G073758' => 'gma', 'Glyma.03G083200' => 'gma', 'Glyma.03G225500' => 'gma', 'Glyma.05G037766' => 'gma', 'Glyma.07G133500' => 'gma', 'Glyma.10G139400' => 'gma', 'Glyma.10G248900' => 'gma', 'Glyma.11G137800' => 'gma', 'Glyma.12G061300' => 'gma', 'Glyma.13G337900' => 'gma', 'Glyma.15G036600' => 'gma', 'Glyma.18G182800' => 'gma', 'Glyma.19G222500' => 'gma', 'Glyma.20G144800' => 'gma', 'Gohir.A01G222000' => 'ghi', 'Gohir.A03G044000' => 'ghi', 'Gohir.A03G044100' => 'ghi', 'Gohir.A04G083100' => 'ghi', 'Gohir.A07G127200' => 'ghi', 'Gohir.A07G132400' => 'ghi', 'Gohir.A08G000700' => 'ghi', 'Gohir.A11G327300' => 'ghi', 'Gohir.D01G211500' => 'ghi', 'Gohir.D03G123400' => 'ghi', 'Gohir.D03G123500' => 'ghi', 'Gohir.D04G121800' => 'ghi', 'Gohir.D07G131500' => 'ghi', 'Gohir.D07G136600' => 'ghi', 'Gohir.D08G011600' => 'ghi', 'Gohir.D11G346200' => 'ghi', 'Gorai.001G142800' => 'gra', 'Gorai.001G148700' => 'gra', 'Gorai.002G257300' => 'gra', 'Gorai.003G130000' => 'gra', 'Gorai.003G130100' => 'gra', 'Gorai.004G005300' => 'gra', 'Gorai.007G376500' => 'gra', 'Gorai.012G104700' => 'gra', 'GSVIVG01017946001' => 'vvi', 'GSVIVG01024928001' => 'vvi', 'GSVIVG01028227001' => 'vvi', 'GSVIVG01034151001' => 'vvi', 'HanXRQChr05g0135031' => 'han', 'HanXRQChr05g0135041' => 'han', 'HanXRQChr05g0140021' => 'han', 'HanXRQChr06g0178981' => 'han', 'HanXRQChr07g0188251' => 'han', 'HanXRQChr08g0235311' => 'han', 'HanXRQChr09g0271011' => 'han', 'HanXRQChr10g0293321' => 'han', 'HanXRQChr13g0388171' => 'han', 'Haze_00916' => 'cav', 'Haze_05063' => 'cav', 'Haze_20814' => 'cav', 'Haze_24128' => 'cav', 'Hma1.2p1_0745F.1_g212010' => 'hma', 'Hma1.2p1_0757F.1_g213260' => 'hma', 'Hma1.2p1_0936F.1_g238840' => 'hma', 'Hma1.2p1_1735F.1_g299890' => 'hma', 'Hma1.2p1_1861F.1_g305685' => 'hma', 'HPP92_003397' => 'vpl', 'HPP92_012597' => 'vpl', 'HPP92_015520' => 'vpl', 'HPP92_015539' => 'vpl', 'HPP92_020373' => 'vpl', 'Hund04938' => 'sun', 'Hund10677' => 'sun', 'Hund11033' => 'sun', 'Hund12155' => 'sun', 'Lalb_Chr01g0022551' => 'lal', 'Lalb_Chr03g0042341' => 'lal', 'Lalb_Chr07g0192931' => 'lal', 'Lalb_Chr12g0209551' => 'lal', 'Lalb_Chr19g0125251' => 'lal', 'Lalb_Chr19g0137891' => 'lal', 'Lalb_Chr21g0304641' => 'lal', 'Lalb_Chr21g0309881' => 'lal', 'Lj1A5T12' => 'lonja', 'Lj1C148G10' => 'lonja', 'Lj2A93T83' => 'lonja', 'Lj3A738G68' => 'lonja', 'Lj3C966T1' => 'lonja', 'Lj3g0018958' => 'lja', 'Lj3g0021831' => 'lja', 'Lj3g0025443' => 'lja', 'Lj4g0026809' => 'lja', 'Lj5g0012558' => 'lja', 'Lj5g0021586' => 'lja', 'Lsat_1_v5_gn_5_156840' => 'lsa', 'Lsat_1_v5_gn_8_73460' => 'lsa', 'Lsat_1_v5_gn_8_73481' => 'lsa', 'Lsat_1_v5_gn_9_31601' => 'lsa', 'Lsat_1_v5_gn_9_77320' => 'lsa', 'Manes.01G171300' => 'mes', 'Manes.01G171400' => 'mes', 'Manes.01G236100' => 'mes', 'Manes.02G130500' => 'mes', 'Manes.02G130600' => 'mes', 'Manes.03G180200' => 'mes', 'Manes.05G007000' => 'mes', 'Manes.08G084400' => 'mes', 'Manes.09G092600' => 'mes', 'Manes.15G027900' => 'mes', 'MBI04_g40948_MAGBIO' => 'mbi', 'MBI14_g12123_MAGBIO' => 'mbi', 'MBI18_g28915_MAGBIO' => 'mbi', 'MCO09G053' => 'mco', 'MCO11G782' => 'mco', 'MCO15G215' => 'mco', 'MD03G1088500' => 'mdo', 'MD03G1088600' => 'mdo', 'MD04G1130800' => 'mdo', 'MD09G1291700' => 'mdo', 'MD11G1097500' => 'mdo', 'MD11G1097600' => 'mdo', 'MD12G1143900' => 'mdo', 'MD13G1191400' => 'mdo', 'MD16G1191500' => 'mdo', 'Medtr1g085570' => 'mtr', 'Medtr1g104610' => 'mtr', 'Medtr2g097520' => 'mtr', 'Medtr4g021800' => 'mtr', 'Medtr4g021825' => 'mtr', 'Medtr4g064270' => 'mtr', 'Medtr4g064380' => 'mtr', 'Medtr7g062150' => 'mtr', 'MELO3C003138.2' => 'cme', 'MELO3C005187.2' => 'cme', 'MELO3C009252.2' => 'cme', 'MELO3C014481.2' => 'cme', 'MELO3C020616.2' => 'cme', 'MELO3C020617.2' => 'cme', 'MELO3C020618.2' => 'cme', 'Migut.G00328' => 'egut', 'Migut.J00320' => 'egut', 'Migut.L01000' => 'egut', 'Migut.L01953' => 'egut', 'MSTRG.10253' => 'ama', 'MSTRG.19077' => 'ama', 'MSTRG.26780' => 'ama', 'MSTRG.4023' => 'ama', 'MSTRG.5655' => 'ama', 'MSTRG.9992' => 'ama', 'Nitab4.5_0000043g0310' => 'nta', 'Nitab4.5_0000463g0080' => 'nta', 'Nitab4.5_0000705g0170' => 'nta', 'Nitab4.5_0001326g0060' => 'nta', 'Nitab4.5_0001628g0030' => 'nta', 'Nitab4.5_0002103g0110' => 'nta', 'Nitab4.5_0002946g0030' => 'nta', 'Nitab4.5_0004639g0030' => 'nta', 'Nn2g11149' => 'nnu', 'Nn2g13389' => 'nnu', 'Nn4g25326' => 'nnu', 'Nn4g26290' => 'nnu', 'Nn5g29865' => 'nnu', 'Oeu004163.1' => 'oeu', 'Oeu006901.1' => 'oeu', 'Oeu010096.1' => 'oeu', 'Oeu024340.1' => 'oeu', 'Oeu048369.1' => 'oeu', 'Os01g0973000' => 'osa', 'Os03g0273800' => 'osa', 'Os03g0701200' => 'osa', 'Os03g0834050' => 'osa', 'Os07g0634400' => 'osa', 'Peaxi162Scf00092g01414' => 'pax', 'Peaxi162Scf00165g00818' => 'pax', 'Peaxi162Scf00309g00516' => 'pax', 'Peaxi162Scf00774g00218' => 'pax', 'PGR004G1824' => 'pgr', 'PGR004G2606' => 'pgr', 'PGR031G2716' => 'pgr', 'PGR102G2460' => 'pgr', 'PGR142G2599' => 'pgr', 'PGSC0003DMG400000843' => 'stu', 'PGSC0003DMG400008829' => 'stu', 'PGSC0003DMG400030418' => 'stu', 'PGSC0003DMG400031834' => 'stu', 'PGSC0003DMG401028300' => 'stu', 'PGSC0003DMG402028300' => 'stu', 'Phvul.001G219300' => 'pvu', 'Phvul.007G056000' => 'pvu', 'Phvul.007G208000' => 'pvu', 'Phvul.008G119500' => 'pvu', 'Phvul.010G011200' => 'pvu', 'Phvul.010G014800' => 'pvu', 'Phvul.011G062900' => 'pvu', 'Phvul.L007043' => 'pvu', 'Potri.001G242300' => 'ptr', 'Potri.002G185300' => 'ptr', 'Potri.006G086900' => 'ptr', 'Potri.008G151700' => 'ptr', 'Potri.009G033500' => 'ptr', 'Potri.010G089300' => 'ptr', 'Potri.014G110800' => 'ptr', 'Pp3c27_8130' => 'ppa', 'Pp3c6_27410' => 'ppa', 'PRCOL_00001659' => 'pco', 'PRCOL_00001927' => 'pco', 'PRCOL_00003649' => 'pco', 'Prupe.1G011600' => 'ppe', 'Prupe.3G000800' => 'ppe', 'Prupe.3G001100' => 'ppe', 'Prupe.6G072700' => 'ppe', 'Prupe.6G072800' => 'ppe', 'Prupe.6G257300' => 'ppe', 'Prupe.8G033000' => 'ppe', 'Psat0s2633g0080' => 'psa', 'Psat0s3396g0080' => 'psa', 'Psat0s3396g0200' => 'psa', 'Psat3g139080' => 'psa', 'Psat5g285080' => 'psa', 'Psat6g157760' => 'psa', 'Psat6g208440' => 'psa', 'Psat7g215320' => 'psa', 'Psat7g215400' => 'psa', 'Psat7g235600' => 'psa', 'Psat7g235760' => 'psa', 'PSO063G4603' => 'pso', 'PSO210G0182' => 'pso', 'PSO210G0196' => 'pso', 'PSO339G0394' => 'pso', 'PSO339G4127' => 'pso', 'PSO513G0064' => 'pso', 'PSO761G0079' => 'pso', 'QL01p031003' => 'qlo', 'QL01p031078' => 'qlo', 'QL06p003004' => 'qlo', 'QL07p048731' => 'qlo', 'QL09p037427' => 'qlo', 'RcHm_v2.0_Chr3g0466361' => 'rch', 'RcHm_v2.0_Chr3g0485571' => 'rch', 'RcHm_v2.0_Chr4g0416551' => 'rch', 'RcHm_v2.0_Chr5g0065831' => 'rch', 'Rhsim01G0230500' => 'rsi', 'Rhsim05G0194000' => 'rsi', 'Rhsim08G0250400' => 'rsi', 'Sabra02G0131000' => 'sbr', 'Sabra06G0066300' => 'sbr', 'Sabra08G0115500' => 'sbr', 'Sabra09G0023900' => 'sbr', 'Sabra10G0054000' => 'sbr', 'Sabra14G0081500' => 'sbr', 'Sabra16G0147100' => 'sbr', 'SalBow2G2957' => 'sbo', 'SalBow4G3320' => 'sbo', 'SalBow8G1894' => 'sbo', 'Sc07g0007950' => 'sci', 'Sc12g0001360' => 'sci', 'Sc13g0004330' => 'sci', 'Sc20g0005010' => 'sci', 'Sed0000361' => 'sed', 'Sed0001706' => 'sed', 'Sed0002422' => 'sed', 'Sed0004029' => 'sed', 'Sed0004602' => 'sed', 'Sed0004943' => 'sed', 'Sed0008646' => 'sed', 'Sed0023313' => 'sed', 'Sed0024843' => 'sed', 'SEGI_00081' => 'sgi', 'SEGI_00947' => 'sgi', 'SEGI_04046' => 'sgi', 'SEGI_06880' => 'sgi', 'SEGI_09736' => 'sgi', 'SEGI_12741' => 'sgi', 'SEGI_14530' => 'sgi', 'SEGI_20705' => 'sgi', 'SEGI_26088' => 'sgi', 'SEGI_28323' => 'sgi', 'SEGI_33343' => 'sgi', 'SGA_v2.0_scaffold126G33775' => 'sas', 'SGA_v2.0_scaffold2G01337' => 'sas', 'SGA_v2.0_scaffold38G15006' => 'sas', 'SGA_v2.0_scaffold39G15264' => 'sas', 'SGA_v2.0_scaffold453G51880' => 'sas', 'SHI12696' => 'shi', 'SMO367G1096' => 'smo', 'Solyc01g068630.3' => 'sly', 'Solyc05g011880.3' => 'sly', 'Solyc06g076300.3' => 'sly', 'Solyc09g010940.4' => 'sly', 'Solyc09g075890.3' => 'sly', 'Sopen01g030560' => 'spe', 'Sopen05g006630' => 'spe', 'Sopen06g032720' => 'spe', 'Sopen09g005660' => 'spe', 'Sopen09g030690' => 'spe', 'Sp4g14540' => 'spa', 'Sp4g20030' => 'spa', 'Sp5g01320' => 'spa', 'Sp6g21170' => 'spa', 'Sp6g21180' => 'spa', 'Sp6g21190' => 'spa', 'Sp6g40220' => 'spa', 'TAR362G0122' => 'tar', 'TAR362G1338' => 'tar', 'TAR369G0590' => 'tar', 'TAR371G0824' => 'tar', 'TAR622G1429' => 'tar', 'TAR623G0734' => 'tar', 'TAR625G0441' => 'tar', 'TAR629G0976' => 'tar', 'TAR633G1195' => 'tar', 'TAR636G2660' => 'tar', 'THA.LOC104799440' => 'tha', 'THA.LOC104800966' => 'tha', 'THA.LOC104806559' => 'tha', 'THA.LOC104810765' => 'tha', 'THA.LOC104816266' => 'tha', 'THA.LOC104817419' => 'tha', 'THA.LOC104827021' => 'tha', 'Thecc.01G327400' => 'tca', 'Thecc.04G229200' => 'tca', 'Thecc.05G037400' => 'tca', 'Thecc.09G318600' => 'tca', 'Thecc.09G318700' => 'tca', 'Thhalv10006238m.g' => 'esa', 'Thhalv10014321m.g' => 'esa', 'Thhalv10014335m.g' => 'esa', 'Thhalv10015826m.g' => 'esa', 'Thhalv10017107m.g' => 'esa', 'Thhalv10017180m.g' => 'esa', 'Thhalv10029339m.g' => 'esa', 'TPR.G1699' => 'tpr', 'TPR.G23609' => 'tpr', 'TPR.G3081' => 'tpr', 'TPR.G40397' => 'tpr', 'TPR.G5522' => 'tpr', 'TPR.G5618' => 'tpr', 'TPR.G5626' => 'tpr', 'TWI09G1632' => 'twi', 'TWI23G1230' => 'twi', 'TWI53G1064' => 'twi', 'TWI59G0751' => 'twi', 'TWI74G0947' => 'twi', 'TWI77G0337' => 'twi', 'TWI79G1254' => 'twi', 'unitig_0.g2341' => 'ugi', 'unitig_26.g10006' => 'ugi', 'unitig_26.g10008' => 'ugi', 'unitig_26.g9192' => 'ugi', 'vmacro14547' => 'vma', 'vmacro15333' => 'vma', 'vmacro18743' => 'vma', 'vmacro20166' => 'vma', 'VMungo0331G0523' => 'vmu', 'VMungo0331G1202' => 'vmu', 'VMungo0720G1228' => 'vmu', 'VMungo0720G1514' => 'vmu', 'VMungo1080G0169' => 'vmu', 'VMungo1127G1475' => 'vmu', 'VMungo1383G1208' => 'vmu', 'VMungo1383G1698' => 'vmu', 'Zm00001eb012270' => 'zma', 'Zm00001eb054100' => 'zma', 'Zm00001eb063350' => 'zma', 'Zm00001eb328560' => 'zma', 'Zm00001eb342820' => 'zma', 'Zm00001eb362210' => 'zma', 'Zm00001eb397730' => 'zma', 'Zm00001eb399750' => 'zma' ) $gf_id = 'HOM05D000959' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000959' ) $data_identifier = 'HOM05D000959' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 5, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 5, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 10, 'mbi' => (int) 3, 'mco' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 2, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 3, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 11, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399750' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000959', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '622', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p07100' => 'bna', 'A03p11720' => 'bna', 'A05p08300' => 'bna', 'A05p13380' => 'bna', 'A09p54130' => 'bna', 'A10p16690' => 'bna', 'A10p16700' => 'bna', 'A10p33390' => 'bna', 'Aa31LG10G16020' => 'aar', 'Aa31LG1G11810' => 'aar', 'Aa31LG1G11830' => 'aar', 'Aa31LG1G22510' => 'aar', 'Aa31LG5G4890' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5793' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2310' => 'aag', 'Actinidia08499' => 'ach', 'Actinidia11262' => 'ach', 'Actinidia23926' => 'ach', 'Actinidia34420' => 'ach', 'Actinidia36970' => 'ach', 'Ah.02g111220' => 'amhyb', 'Ah.15g097750' => 'amhyb', 'AL4G27500' => 'aly', 'AL6G11470' => 'aly', 'AL8G35950' => 'aly', 'AL8G35960' => 'aly', 'AL8G35970' => 'aly', 'Aqoxy1G00912' => 'aox', 'Aqoxy2G02253' => 'aox', 'Aqoxy2G02411' => 'aox', 'Aqoxy5G00485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BZ66YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K8ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM4FUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6BF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HFV7XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25JBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0YNNV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MAKK6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P70IT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP2Z6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V61LZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YWP64R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3S9AI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7PGHH' => 'arhy', 'AT2G32150' => 'ath', 'AT3G62040' => 'ath', 'AT5G02230' => 'ath', 'AT5G59480' => 'ath', 'AT5G59490' => 'ath', 'ATR0332G060' => 'atr', 'ATR0559G190' => 'atr', 'ATR0693G294' => 'atr', 'Atru.chr3.3975' => 'acertr', 'Atru.chr3.3976' => 'acertr', 'Atru.chr3.3977' => 'acertr', 'Atru.chr4.2498' => 'acertr', 'Atru.chr5.838' => 'acertr', 'Atru.chr8.1990' => 'acertr', 'Atru.chr8.1991' => 'acertr', 'Atru.chr8.1992' => 'acertr', 'AUR62001759' => 'cqu', 'AUR62009545' => 'cqu', 'AUR62010474' => 'cqu', 'AUR62025820' => 'cqu', 'AUR62030422' => 'cqu', 'AUR62033605' => 'cqu', 'AUR62038615' => 'cqu', 'AUR62041347' => 'cqu', 'BcaB01g04574' => 'bca', 'BcaB02g09263' => 'bca', 'BcaB02g10453' => 'bca', 'BcaB05g22513' => 'bca', 'BcaB08g36253' => 'bca', 'BcaB08g36254' => 'bca', 'BcaC01g06519' => 'bca', 'BcaC02g11889' => 'bca', 'BcaC03g14010' => 'bca', 'BcaC03g18439' => 'bca', 'BcaC04g19765' => 'bca', 'BcaC09g48432' => 'bca', 'BcaNung07302' => 'bca', 'BolC2t06040H' => 'bol', 'BolC2t07346H' => 'bol', 'BolC3t13817H' => 'bol', 'BolC4t22625H' => 'bol', 'BolC4t23297H' => 'bol', 'BolC8t51278H' => 'bol', 'BolC9t58050H' => 'bol', 'BolC9t58051H' => 'bol', 'BolC9t60163H' => 'bol', 'BraA02t04712Z' => 'bra', 'BraA02t05791Z' => 'bra', 'BraA03t10483Z' => 'bra', 'BraA05t19795Z' => 'bra', 'BraA05t20276Z' => 'bra', 'BraA09t40827Z' => 'bra', 'BraA10t43750Z' => 'bra', 'BraA10t43751Z' => 'bra', 'BraA10t45370Z' => 'bra', 'C02p00400' => 'bna', 'C02p12460' => 'bna', 'C03p13680' => 'bna', 'C04p10270' => 'bna', 'C04p17500' => 'bna', 'C08p37010' => 'bna', 'C09p51880' => 'bna', 'C09p51890' => 'bna', 'C09p74300' => 'bna', 'CAN.G179.26' => 'can', 'CAN.G3384.1' => 'can', 'CAN.G394.68' => 'can', 'CAN.G907.13' => 'can', 'CANSAT11G0012' => 'cansat', 'CANSAT25G1586' => 'cansat', 'CANSAT35G0735' => 'cansat', 'CANSAT54G0556' => 'cansat', 'CANSAT64G0356' => 'cansat', 'CANSAT78G2042' => 'cansat', 'CARHR125920' => 'chi', 'CARHR131910' => 'chi', 'CARHR172390' => 'chi', 'CARHR211140' => 'chi', 'CARHR285850' => 'chi', 'CARHR285860' => 'chi', 'Carub.0004s1347' => 'cru', 'Carub.0004s1960' => 'cru', 'Carub.0005s2880' => 'cru', 'Carub.0006s0107' => 'cru', 'Carub.0008s2015' => 'cru', 'Carub.0008s2016' => 'cru', 'Carub.0008s2017' => 'cru', 'Ca_01315_v3' => 'car', 'Ca_05063_v3' => 'car', 'Ca_10231_v3' => 'car', 'Ca_10913_v3' => 'car', 'Ca_19156_v3' => 'car', 'Ca_23644_v3' => 'car', 'Ca_26735_v3' => 'car', 'Cc01_g13130' => 'ccan', 'Cc02_g21690' => 'ccan', 'Cc03_g03600' => 'ccan', 'Cc06_g02510' => 'ccan', 'CDE02G1265' => 'cde', 'CDE05G0415' => 'cde', 'CDE08G1082' => 'cde', 'Cfa005780' => 'cfa', 'Cfa011522' => 'cfa', 'Cfa011523' => 'cfa', 'Cfa015627' => 'cfa', 'Cfa017359' => 'cfa', 'Ciclev10005687m.g' => 'ccl', 'Ciclev10012173m.g' => 'ccl', 'Ciclev10021621m.g' => 'ccl', 'Ciclev10028968m.g' => 'ccl', 'Ciclev10029907m.g' => 'ccl', 'CiPaw.01G164800' => 'cil', 'CiPaw.07G083700' => 'cil', 'CiPaw.07G127000' => 'cil', 'CiPaw.07G136900' => 'cil', 'CiPaw.08G081700' => 'cil', 'CiPaw.09G194600' => 'cil', 'CiPaw.10G146500' => 'cil', 'CiPaw.13G091500' => 'cil', 'CiPaw.13G091600' => 'cil', 'ClCG00G003390' => 'cla', 'ClCG01G007220' => 'cla', 'ClCG03G001370' => 'cla', 'ClCG04G008100' => 'cla', 'ClCG06G006110' => 'cla', 'ClCG06G006130' => 'cla', 'ClCG10G021210' => 'cla', 'COL.COLO4_07648' => 'col', 'COL.COLO4_07650' => 'col', 'COL.COLO4_07651' => 'col', 'COL.COLO4_14780' => 'col', 'COL.COLO4_18546' => 'col', 'COL.COLO4_18547' => 'col', 'COL.COLO4_23103' => 'col', 'COL.COLO4_30419' => 'col', 'COL.COLO4_34232' => 'col', 'Cpa.g.sc169.20' => 'cpa', 'Cpa.g.sc57.45' => 'cpa', 'Cpa.g.sc58.124' => 'cpa', 'Cpa.g.sc58.125' => 'cpa', 'Cpa.g.sc81.118' => 'cpa', 'Cpa.g.sc81.119' => 'cpa', 'Cre12.g524700' => 'cre', 'CsaV3_1G034430' => 'csa', 'CsaV3_1G034440' => 'csa', 'CsaV3_1G034450' => 'csa', 'CsaV3_3G034830' => 'csa', 'CsaV3_4G025090' => 'csa', 'CsaV3_5G018660' => 'csa', 'CsaV3_6G038160' => 'csa', 'CSS0003447' => 'camsi', 'CSS0017840' => 'camsi', 'CSS0019260' => 'camsi', 'CSS0040375' => 'camsi', 'CSS0042533' => 'camsi', 'DCAR_005960' => 'dca', 'DCAR_012104' => 'dca', 'DCAR_012105' => 'dca', 'DCAR_012293' => 'dca', 'DCAR_015632' => 'dca', 'DCAR_024602' => 'dca', 'DCAR_028752' => 'dca', 'Dinv06261' => 'din', 'Dinv13982' => 'din', 'Dinv17029' => 'din', 'Dinv18463' => 'din', 'Dinv33181' => 'din', 'Dinv35585' => 'din', 'Dinv37161' => 'din', 'Dinv42977' => 'din', 'Dinv43122' => 'din', 'Dinv44517' => 'din', 'Duzib093G0256' => 'dzi', 'Duzib106G1254' => 'dzi', 'Duzib128G1789' => 'dzi', 'Duzib133G0633' => 'dzi', 'Duzib138G0510' => 'dzi', 'Duzib150G1084' => 'dzi', 'Duzib168G0488' => 'dzi', 'Duzib168G1523' => 'dzi', 'Duzib170G0133' => 'dzi', 'ECA234G1433' => 'eca', 'ECA236G1432' => 'eca', 'ECA236G2256' => 'eca', 'ECA236G2365' => 'eca', 'ECA236G4830' => 'eca', 'ECA248G1505' => 'eca', 'EL10Ac3g06431' => 'bvu', 'EL10Ac5g12577' => 'bvu', 'EL10Ac6g13533' => 'bvu', 'EL10Ac7g16045' => 'bvu', 'Eucgr.A01281' => 'egr', 'Eucgr.B02326' => 'egr', 'Eucgr.H03532' => 'egr', 'Eucgr.K00553' => 'egr', 'Eucgr.K03116' => 'egr', 'FAN02G3963' => 'fan', 'FAN05G0438' => 'fan', 'FAN09G2434' => 'fan', 'FAN12G3984' => 'fan', 'FAN14G0798' => 'fan', 'FAN17G0652' => 'fan', 'FAN19G1988' => 'fan', 'FAN22G0632' => 'fan', 'FAN23G0387' => 'fan', 'FAN26G1323' => 'fan', 'FAN28G0666' => 'fan', 'FvH4_1g26080' => 'fve', 'FvH4_3g36780' => 'fve', 'FvH4_4g15270' => 'fve', 'FvH4_6g13490' => 'fve', 'Glyma.01G098700' => 'gma', 'Glyma.03G065900' => 'gma', 'Glyma.03G073754' => 'gma', 'Glyma.03G073758' => 'gma', 'Glyma.03G083200' => 'gma', 'Glyma.03G225500' => 'gma', 'Glyma.05G037766' => 'gma', 'Glyma.07G133500' => 'gma', 'Glyma.10G139400' => 'gma', 'Glyma.10G248900' => 'gma', 'Glyma.11G137800' => 'gma', 'Glyma.12G061300' => 'gma', 'Glyma.13G337900' => 'gma', 'Glyma.15G036600' => 'gma', 'Glyma.18G182800' => 'gma', 'Glyma.19G222500' => 'gma', 'Glyma.20G144800' => 'gma', 'Gohir.A01G222000' => 'ghi', 'Gohir.A03G044000' => 'ghi', 'Gohir.A03G044100' => 'ghi', 'Gohir.A04G083100' => 'ghi', 'Gohir.A07G127200' => 'ghi', 'Gohir.A07G132400' => 'ghi', 'Gohir.A08G000700' => 'ghi', 'Gohir.A11G327300' => 'ghi', 'Gohir.D01G211500' => 'ghi', 'Gohir.D03G123400' => 'ghi', 'Gohir.D03G123500' => 'ghi', 'Gohir.D04G121800' => 'ghi', 'Gohir.D07G131500' => 'ghi', 'Gohir.D07G136600' => 'ghi', 'Gohir.D08G011600' => 'ghi', 'Gohir.D11G346200' => 'ghi', 'Gorai.001G142800' => 'gra', 'Gorai.001G148700' => 'gra', 'Gorai.002G257300' => 'gra', 'Gorai.003G130000' => 'gra', 'Gorai.003G130100' => 'gra', 'Gorai.004G005300' => 'gra', 'Gorai.007G376500' => 'gra', 'Gorai.012G104700' => 'gra', 'GSVIVG01017946001' => 'vvi', 'GSVIVG01024928001' => 'vvi', 'GSVIVG01028227001' => 'vvi', 'GSVIVG01034151001' => 'vvi', 'HanXRQChr05g0135031' => 'han', 'HanXRQChr05g0135041' => 'han', 'HanXRQChr05g0140021' => 'han', 'HanXRQChr06g0178981' => 'han', 'HanXRQChr07g0188251' => 'han', 'HanXRQChr08g0235311' => 'han', 'HanXRQChr09g0271011' => 'han', 'HanXRQChr10g0293321' => 'han', 'HanXRQChr13g0388171' => 'han', 'Haze_00916' => 'cav', 'Haze_05063' => 'cav', 'Haze_20814' => 'cav', 'Haze_24128' => 'cav', 'Hma1.2p1_0745F.1_g212010' => 'hma', 'Hma1.2p1_0757F.1_g213260' => 'hma', 'Hma1.2p1_0936F.1_g238840' => 'hma', 'Hma1.2p1_1735F.1_g299890' => 'hma', 'Hma1.2p1_1861F.1_g305685' => 'hma', 'HPP92_003397' => 'vpl', 'HPP92_012597' => 'vpl', 'HPP92_015520' => 'vpl', 'HPP92_015539' => 'vpl', 'HPP92_020373' => 'vpl', 'Hund04938' => 'sun', 'Hund10677' => 'sun', 'Hund11033' => 'sun', 'Hund12155' => 'sun', 'Lalb_Chr01g0022551' => 'lal', 'Lalb_Chr03g0042341' => 'lal', 'Lalb_Chr07g0192931' => 'lal', 'Lalb_Chr12g0209551' => 'lal', 'Lalb_Chr19g0125251' => 'lal', 'Lalb_Chr19g0137891' => 'lal', 'Lalb_Chr21g0304641' => 'lal', 'Lalb_Chr21g0309881' => 'lal', 'Lj1A5T12' => 'lonja', 'Lj1C148G10' => 'lonja', 'Lj2A93T83' => 'lonja', 'Lj3A738G68' => 'lonja', 'Lj3C966T1' => 'lonja', 'Lj3g0018958' => 'lja', 'Lj3g0021831' => 'lja', 'Lj3g0025443' => 'lja', 'Lj4g0026809' => 'lja', 'Lj5g0012558' => 'lja', 'Lj5g0021586' => 'lja', 'Lsat_1_v5_gn_5_156840' => 'lsa', 'Lsat_1_v5_gn_8_73460' => 'lsa', 'Lsat_1_v5_gn_8_73481' => 'lsa', 'Lsat_1_v5_gn_9_31601' => 'lsa', 'Lsat_1_v5_gn_9_77320' => 'lsa', 'Manes.01G171300' => 'mes', 'Manes.01G171400' => 'mes', 'Manes.01G236100' => 'mes', 'Manes.02G130500' => 'mes', 'Manes.02G130600' => 'mes', 'Manes.03G180200' => 'mes', 'Manes.05G007000' => 'mes', 'Manes.08G084400' => 'mes', 'Manes.09G092600' => 'mes', 'Manes.15G027900' => 'mes', 'MBI04_g40948_MAGBIO' => 'mbi', 'MBI14_g12123_MAGBIO' => 'mbi', 'MBI18_g28915_MAGBIO' => 'mbi', 'MCO09G053' => 'mco', 'MCO11G782' => 'mco', 'MCO15G215' => 'mco', 'MD03G1088500' => 'mdo', 'MD03G1088600' => 'mdo', 'MD04G1130800' => 'mdo', 'MD09G1291700' => 'mdo', 'MD11G1097500' => 'mdo', 'MD11G1097600' => 'mdo', 'MD12G1143900' => 'mdo', 'MD13G1191400' => 'mdo', 'MD16G1191500' => 'mdo', 'Medtr1g085570' => 'mtr', 'Medtr1g104610' => 'mtr', 'Medtr2g097520' => 'mtr', 'Medtr4g021800' => 'mtr', 'Medtr4g021825' => 'mtr', 'Medtr4g064270' => 'mtr', 'Medtr4g064380' => 'mtr', 'Medtr7g062150' => 'mtr', 'MELO3C003138.2' => 'cme', 'MELO3C005187.2' => 'cme', 'MELO3C009252.2' => 'cme', 'MELO3C014481.2' => 'cme', 'MELO3C020616.2' => 'cme', 'MELO3C020617.2' => 'cme', 'MELO3C020618.2' => 'cme', 'Migut.G00328' => 'egut', 'Migut.J00320' => 'egut', 'Migut.L01000' => 'egut', 'Migut.L01953' => 'egut', 'MSTRG.10253' => 'ama', 'MSTRG.19077' => 'ama', 'MSTRG.26780' => 'ama', 'MSTRG.4023' => 'ama', 'MSTRG.5655' => 'ama', 'MSTRG.9992' => 'ama', 'Nitab4.5_0000043g0310' => 'nta', 'Nitab4.5_0000463g0080' => 'nta', 'Nitab4.5_0000705g0170' => 'nta', 'Nitab4.5_0001326g0060' => 'nta', 'Nitab4.5_0001628g0030' => 'nta', 'Nitab4.5_0002103g0110' => 'nta', 'Nitab4.5_0002946g0030' => 'nta', 'Nitab4.5_0004639g0030' => 'nta', 'Nn2g11149' => 'nnu', 'Nn2g13389' => 'nnu', 'Nn4g25326' => 'nnu', 'Nn4g26290' => 'nnu', 'Nn5g29865' => 'nnu', 'Oeu004163.1' => 'oeu', 'Oeu006901.1' => 'oeu', 'Oeu010096.1' => 'oeu', 'Oeu024340.1' => 'oeu', 'Oeu048369.1' => 'oeu', 'Os01g0973000' => 'osa', 'Os03g0273800' => 'osa', 'Os03g0701200' => 'osa', 'Os03g0834050' => 'osa', 'Os07g0634400' => 'osa', 'Peaxi162Scf00092g01414' => 'pax', 'Peaxi162Scf00165g00818' => 'pax', 'Peaxi162Scf00309g00516' => 'pax', 'Peaxi162Scf00774g00218' => 'pax', 'PGR004G1824' => 'pgr', 'PGR004G2606' => 'pgr', 'PGR031G2716' => 'pgr', 'PGR102G2460' => 'pgr', 'PGR142G2599' => 'pgr', 'PGSC0003DMG400000843' => 'stu', 'PGSC0003DMG400008829' => 'stu', 'PGSC0003DMG400030418' => 'stu', 'PGSC0003DMG400031834' => 'stu', 'PGSC0003DMG401028300' => 'stu', 'PGSC0003DMG402028300' => 'stu', 'Phvul.001G219300' => 'pvu', 'Phvul.007G056000' => 'pvu', 'Phvul.007G208000' => 'pvu', 'Phvul.008G119500' => 'pvu', 'Phvul.010G011200' => 'pvu', 'Phvul.010G014800' => 'pvu', 'Phvul.011G062900' => 'pvu', 'Phvul.L007043' => 'pvu', 'Potri.001G242300' => 'ptr', 'Potri.002G185300' => 'ptr', 'Potri.006G086900' => 'ptr', 'Potri.008G151700' => 'ptr', 'Potri.009G033500' => 'ptr', 'Potri.010G089300' => 'ptr', 'Potri.014G110800' => 'ptr', 'Pp3c27_8130' => 'ppa', 'Pp3c6_27410' => 'ppa', 'PRCOL_00001659' => 'pco', 'PRCOL_00001927' => 'pco', 'PRCOL_00003649' => 'pco', 'Prupe.1G011600' => 'ppe', 'Prupe.3G000800' => 'ppe', 'Prupe.3G001100' => 'ppe', 'Prupe.6G072700' => 'ppe', 'Prupe.6G072800' => 'ppe', 'Prupe.6G257300' => 'ppe', 'Prupe.8G033000' => 'ppe', 'Psat0s2633g0080' => 'psa', 'Psat0s3396g0080' => 'psa', 'Psat0s3396g0200' => 'psa', 'Psat3g139080' => 'psa', 'Psat5g285080' => 'psa', 'Psat6g157760' => 'psa', 'Psat6g208440' => 'psa', 'Psat7g215320' => 'psa', 'Psat7g215400' => 'psa', 'Psat7g235600' => 'psa', 'Psat7g235760' => 'psa', 'PSO063G4603' => 'pso', 'PSO210G0182' => 'pso', 'PSO210G0196' => 'pso', 'PSO339G0394' => 'pso', 'PSO339G4127' => 'pso', 'PSO513G0064' => 'pso', 'PSO761G0079' => 'pso', 'QL01p031003' => 'qlo', 'QL01p031078' => 'qlo', 'QL06p003004' => 'qlo', 'QL07p048731' => 'qlo', 'QL09p037427' => 'qlo', 'RcHm_v2.0_Chr3g0466361' => 'rch', 'RcHm_v2.0_Chr3g0485571' => 'rch', 'RcHm_v2.0_Chr4g0416551' => 'rch', 'RcHm_v2.0_Chr5g0065831' => 'rch', 'Rhsim01G0230500' => 'rsi', 'Rhsim05G0194000' => 'rsi', 'Rhsim08G0250400' => 'rsi', 'Sabra02G0131000' => 'sbr', 'Sabra06G0066300' => 'sbr', 'Sabra08G0115500' => 'sbr', 'Sabra09G0023900' => 'sbr', 'Sabra10G0054000' => 'sbr', 'Sabra14G0081500' => 'sbr', 'Sabra16G0147100' => 'sbr', 'SalBow2G2957' => 'sbo', 'SalBow4G3320' => 'sbo', 'SalBow8G1894' => 'sbo', 'Sc07g0007950' => 'sci', 'Sc12g0001360' => 'sci', 'Sc13g0004330' => 'sci', 'Sc20g0005010' => 'sci', 'Sed0000361' => 'sed', 'Sed0001706' => 'sed', 'Sed0002422' => 'sed', 'Sed0004029' => 'sed', 'Sed0004602' => 'sed', 'Sed0004943' => 'sed', 'Sed0008646' => 'sed', 'Sed0023313' => 'sed', 'Sed0024843' => 'sed', 'SEGI_00081' => 'sgi', 'SEGI_00947' => 'sgi', 'SEGI_04046' => 'sgi', 'SEGI_06880' => 'sgi', 'SEGI_09736' => 'sgi', 'SEGI_12741' => 'sgi', 'SEGI_14530' => 'sgi', 'SEGI_20705' => 'sgi', 'SEGI_26088' => 'sgi', 'SEGI_28323' => 'sgi', 'SEGI_33343' => 'sgi', 'SGA_v2.0_scaffold126G33775' => 'sas', 'SGA_v2.0_scaffold2G01337' => 'sas', 'SGA_v2.0_scaffold38G15006' => 'sas', 'SGA_v2.0_scaffold39G15264' => 'sas', 'SGA_v2.0_scaffold453G51880' => 'sas', 'SHI12696' => 'shi', 'SMO367G1096' => 'smo', 'Solyc01g068630.3' => 'sly', 'Solyc05g011880.3' => 'sly', 'Solyc06g076300.3' => 'sly', 'Solyc09g010940.4' => 'sly', 'Solyc09g075890.3' => 'sly', 'Sopen01g030560' => 'spe', 'Sopen05g006630' => 'spe', 'Sopen06g032720' => 'spe', 'Sopen09g005660' => 'spe', 'Sopen09g030690' => 'spe', 'Sp4g14540' => 'spa', 'Sp4g20030' => 'spa', 'Sp5g01320' => 'spa', 'Sp6g21170' => 'spa', 'Sp6g21180' => 'spa', 'Sp6g21190' => 'spa', 'Sp6g40220' => 'spa', 'TAR362G0122' => 'tar', 'TAR362G1338' => 'tar', 'TAR369G0590' => 'tar', 'TAR371G0824' => 'tar', 'TAR622G1429' => 'tar', 'TAR623G0734' => 'tar', 'TAR625G0441' => 'tar', 'TAR629G0976' => 'tar', 'TAR633G1195' => 'tar', 'TAR636G2660' => 'tar', 'THA.LOC104799440' => 'tha', 'THA.LOC104800966' => 'tha', 'THA.LOC104806559' => 'tha', 'THA.LOC104810765' => 'tha', 'THA.LOC104816266' => 'tha', 'THA.LOC104817419' => 'tha', 'THA.LOC104827021' => 'tha', 'Thecc.01G327400' => 'tca', 'Thecc.04G229200' => 'tca', 'Thecc.05G037400' => 'tca', 'Thecc.09G318600' => 'tca', 'Thecc.09G318700' => 'tca', 'Thhalv10006238m.g' => 'esa', 'Thhalv10014321m.g' => 'esa', 'Thhalv10014335m.g' => 'esa', 'Thhalv10015826m.g' => 'esa', 'Thhalv10017107m.g' => 'esa', 'Thhalv10017180m.g' => 'esa', 'Thhalv10029339m.g' => 'esa', 'TPR.G1699' => 'tpr', 'TPR.G23609' => 'tpr', 'TPR.G3081' => 'tpr', 'TPR.G40397' => 'tpr', 'TPR.G5522' => 'tpr', 'TPR.G5618' => 'tpr', 'TPR.G5626' => 'tpr', 'TWI09G1632' => 'twi', 'TWI23G1230' => 'twi', 'TWI53G1064' => 'twi', 'TWI59G0751' => 'twi', 'TWI74G0947' => 'twi', 'TWI77G0337' => 'twi', 'TWI79G1254' => 'twi', 'unitig_0.g2341' => 'ugi', 'unitig_26.g10006' => 'ugi', 'unitig_26.g10008' => 'ugi', 'unitig_26.g9192' => 'ugi', 'vmacro14547' => 'vma', 'vmacro15333' => 'vma', 'vmacro18743' => 'vma', 'vmacro20166' => 'vma', 'VMungo0331G0523' => 'vmu', 'VMungo0331G1202' => 'vmu', 'VMungo0720G1228' => 'vmu', 'VMungo0720G1514' => 'vmu', 'VMungo1080G0169' => 'vmu', 'VMungo1127G1475' => 'vmu', 'VMungo1383G1208' => 'vmu', 'VMungo1383G1698' => 'vmu', 'Zm00001eb012270' => 'zma', 'Zm00001eb054100' => 'zma', 'Zm00001eb063350' => 'zma', 'Zm00001eb328560' => 'zma', 'Zm00001eb342820' => 'zma', 'Zm00001eb362210' => 'zma', 'Zm00001eb397730' => 'zma', 'Zm00001eb399750' => 'zma' ), 'gf_id' => 'HOM05D000959', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000959' ), 'data_identifier' => 'HOM05D000959', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000959', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '622', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p07100' => 'bna', 'A03p11720' => 'bna', 'A05p08300' => 'bna', 'A05p13380' => 'bna', 'A09p54130' => 'bna', 'A10p16690' => 'bna', 'A10p16700' => 'bna', 'A10p33390' => 'bna', 'Aa31LG10G16020' => 'aar', 'Aa31LG1G11810' => 'aar', 'Aa31LG1G11830' => 'aar', 'Aa31LG1G22510' => 'aar', 'Aa31LG5G4890' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5793' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2310' => 'aag', 'Actinidia08499' => 'ach', 'Actinidia11262' => 'ach', 'Actinidia23926' => 'ach', 'Actinidia34420' => 'ach', 'Actinidia36970' => 'ach', 'Ah.02g111220' => 'amhyb', 'Ah.15g097750' => 'amhyb', 'AL4G27500' => 'aly', 'AL6G11470' => 'aly', 'AL8G35950' => 'aly', 'AL8G35960' => 'aly', 'AL8G35970' => 'aly', 'Aqoxy1G00912' => 'aox', 'Aqoxy2G02253' => 'aox', 'Aqoxy2G02411' => 'aox', 'Aqoxy5G00485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BZ66YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K8ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM4FUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6BF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HFV7XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25JBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0YNNV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MAKK6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P70IT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP2Z6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V61LZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YWP64R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3S9AI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7PGHH' => 'arhy', 'AT2G32150' => 'ath', 'AT3G62040' => 'ath', 'AT5G02230' => 'ath', 'AT5G59480' => 'ath', 'AT5G59490' => 'ath', 'ATR0332G060' => 'atr', 'ATR0559G190' => 'atr', 'ATR0693G294' => 'atr', 'Atru.chr3.3975' => 'acertr', 'Atru.chr3.3976' => 'acertr', 'Atru.chr3.3977' => 'acertr', 'Atru.chr4.2498' => 'acertr', 'Atru.chr5.838' => 'acertr', 'Atru.chr8.1990' => 'acertr', 'Atru.chr8.1991' => 'acertr', 'Atru.chr8.1992' => 'acertr', 'AUR62001759' => 'cqu', 'AUR62009545' => 'cqu', 'AUR62010474' => 'cqu', 'AUR62025820' => 'cqu', 'AUR62030422' => 'cqu', 'AUR62033605' => 'cqu', 'AUR62038615' => 'cqu', 'AUR62041347' => 'cqu', 'BcaB01g04574' => 'bca', 'BcaB02g09263' => 'bca', 'BcaB02g10453' => 'bca', 'BcaB05g22513' => 'bca', 'BcaB08g36253' => 'bca', 'BcaB08g36254' => 'bca', 'BcaC01g06519' => 'bca', 'BcaC02g11889' => 'bca', 'BcaC03g14010' => 'bca', 'BcaC03g18439' => 'bca', 'BcaC04g19765' => 'bca', 'BcaC09g48432' => 'bca', 'BcaNung07302' => 'bca', 'BolC2t06040H' => 'bol', 'BolC2t07346H' => 'bol', 'BolC3t13817H' => 'bol', 'BolC4t22625H' => 'bol', 'BolC4t23297H' => 'bol', 'BolC8t51278H' => 'bol', 'BolC9t58050H' => 'bol', 'BolC9t58051H' => 'bol', 'BolC9t60163H' => 'bol', 'BraA02t04712Z' => 'bra', 'BraA02t05791Z' => 'bra', 'BraA03t10483Z' => 'bra', 'BraA05t19795Z' => 'bra', 'BraA05t20276Z' => 'bra', 'BraA09t40827Z' => 'bra', 'BraA10t43750Z' => 'bra', 'BraA10t43751Z' => 'bra', 'BraA10t45370Z' => 'bra', 'C02p00400' => 'bna', 'C02p12460' => 'bna', 'C03p13680' => 'bna', 'C04p10270' => 'bna', 'C04p17500' => 'bna', 'C08p37010' => 'bna', 'C09p51880' => 'bna', 'C09p51890' => 'bna', 'C09p74300' => 'bna', 'CAN.G179.26' => 'can', 'CAN.G3384.1' => 'can', 'CAN.G394.68' => 'can', 'CAN.G907.13' => 'can', 'CANSAT11G0012' => 'cansat', 'CANSAT25G1586' => 'cansat', 'CANSAT35G0735' => 'cansat', 'CANSAT54G0556' => 'cansat', 'CANSAT64G0356' => 'cansat', 'CANSAT78G2042' => 'cansat', 'CARHR125920' => 'chi', 'CARHR131910' => 'chi', 'CARHR172390' => 'chi', 'CARHR211140' => 'chi', 'CARHR285850' => 'chi', 'CARHR285860' => 'chi', 'Carub.0004s1347' => 'cru', 'Carub.0004s1960' => 'cru', 'Carub.0005s2880' => 'cru', 'Carub.0006s0107' => 'cru', 'Carub.0008s2015' => 'cru', 'Carub.0008s2016' => 'cru', 'Carub.0008s2017' => 'cru', 'Ca_01315_v3' => 'car', 'Ca_05063_v3' => 'car', 'Ca_10231_v3' => 'car', 'Ca_10913_v3' => 'car', 'Ca_19156_v3' => 'car', 'Ca_23644_v3' => 'car', 'Ca_26735_v3' => 'car', 'Cc01_g13130' => 'ccan', 'Cc02_g21690' => 'ccan', 'Cc03_g03600' => 'ccan', 'Cc06_g02510' => 'ccan', 'CDE02G1265' => 'cde', 'CDE05G0415' => 'cde', 'CDE08G1082' => 'cde', 'Cfa005780' => 'cfa', 'Cfa011522' => 'cfa', 'Cfa011523' => 'cfa', 'Cfa015627' => 'cfa', 'Cfa017359' => 'cfa', 'Ciclev10005687m.g' => 'ccl', 'Ciclev10012173m.g' => 'ccl', 'Ciclev10021621m.g' => 'ccl', 'Ciclev10028968m.g' => 'ccl', 'Ciclev10029907m.g' => 'ccl', 'CiPaw.01G164800' => 'cil', 'CiPaw.07G083700' => 'cil', 'CiPaw.07G127000' => 'cil', 'CiPaw.07G136900' => 'cil', 'CiPaw.08G081700' => 'cil', 'CiPaw.09G194600' => 'cil', 'CiPaw.10G146500' => 'cil', 'CiPaw.13G091500' => 'cil', 'CiPaw.13G091600' => 'cil', 'ClCG00G003390' => 'cla', 'ClCG01G007220' => 'cla', 'ClCG03G001370' => 'cla', 'ClCG04G008100' => 'cla', 'ClCG06G006110' => 'cla', 'ClCG06G006130' => 'cla', 'ClCG10G021210' => 'cla', 'COL.COLO4_07648' => 'col', 'COL.COLO4_07650' => 'col', 'COL.COLO4_07651' => 'col', 'COL.COLO4_14780' => 'col', 'COL.COLO4_18546' => 'col', 'COL.COLO4_18547' => 'col', 'COL.COLO4_23103' => 'col', 'COL.COLO4_30419' => 'col', 'COL.COLO4_34232' => 'col', 'Cpa.g.sc169.20' => 'cpa', 'Cpa.g.sc57.45' => 'cpa', 'Cpa.g.sc58.124' => 'cpa', 'Cpa.g.sc58.125' => 'cpa', 'Cpa.g.sc81.118' => 'cpa', 'Cpa.g.sc81.119' => 'cpa', 'Cre12.g524700' => 'cre', 'CsaV3_1G034430' => 'csa', 'CsaV3_1G034440' => 'csa', 'CsaV3_1G034450' => 'csa', 'CsaV3_3G034830' => 'csa', 'CsaV3_4G025090' => 'csa', 'CsaV3_5G018660' => 'csa', 'CsaV3_6G038160' => 'csa', 'CSS0003447' => 'camsi', 'CSS0017840' => 'camsi', 'CSS0019260' => 'camsi', 'CSS0040375' => 'camsi', 'CSS0042533' => 'camsi', 'DCAR_005960' => 'dca', 'DCAR_012104' => 'dca', 'DCAR_012105' => 'dca', 'DCAR_012293' => 'dca', 'DCAR_015632' => 'dca', 'DCAR_024602' => 'dca', 'DCAR_028752' => 'dca', 'Dinv06261' => 'din', 'Dinv13982' => 'din', 'Dinv17029' => 'din', 'Dinv18463' => 'din', 'Dinv33181' => 'din', 'Dinv35585' => 'din', 'Dinv37161' => 'din', 'Dinv42977' => 'din', 'Dinv43122' => 'din', 'Dinv44517' => 'din', 'Duzib093G0256' => 'dzi', 'Duzib106G1254' => 'dzi', 'Duzib128G1789' => 'dzi', 'Duzib133G0633' => 'dzi', 'Duzib138G0510' => 'dzi', 'Duzib150G1084' => 'dzi', 'Duzib168G0488' => 'dzi', 'Duzib168G1523' => 'dzi', 'Duzib170G0133' => 'dzi', 'ECA234G1433' => 'eca', 'ECA236G1432' => 'eca', 'ECA236G2256' => 'eca', 'ECA236G2365' => 'eca', 'ECA236G4830' => 'eca', 'ECA248G1505' => 'eca', 'EL10Ac3g06431' => 'bvu', 'EL10Ac5g12577' => 'bvu', 'EL10Ac6g13533' => 'bvu', 'EL10Ac7g16045' => 'bvu', 'Eucgr.A01281' => 'egr', 'Eucgr.B02326' => 'egr', 'Eucgr.H03532' => 'egr', 'Eucgr.K00553' => 'egr', 'Eucgr.K03116' => 'egr', 'FAN02G3963' => 'fan', 'FAN05G0438' => 'fan', 'FAN09G2434' => 'fan', 'FAN12G3984' => 'fan', 'FAN14G0798' => 'fan', 'FAN17G0652' => 'fan', 'FAN19G1988' => 'fan', 'FAN22G0632' => 'fan', 'FAN23G0387' => 'fan', 'FAN26G1323' => 'fan', 'FAN28G0666' => 'fan', 'FvH4_1g26080' => 'fve', 'FvH4_3g36780' => 'fve', 'FvH4_4g15270' => 'fve', 'FvH4_6g13490' => 'fve', 'Glyma.01G098700' => 'gma', 'Glyma.03G065900' => 'gma', 'Glyma.03G073754' => 'gma', 'Glyma.03G073758' => 'gma', 'Glyma.03G083200' => 'gma', 'Glyma.03G225500' => 'gma', 'Glyma.05G037766' => 'gma', 'Glyma.07G133500' => 'gma', 'Glyma.10G139400' => 'gma', 'Glyma.10G248900' => 'gma', 'Glyma.11G137800' => 'gma', 'Glyma.12G061300' => 'gma', 'Glyma.13G337900' => 'gma', 'Glyma.15G036600' => 'gma', 'Glyma.18G182800' => 'gma', 'Glyma.19G222500' => 'gma', 'Glyma.20G144800' => 'gma', 'Gohir.A01G222000' => 'ghi', 'Gohir.A03G044000' => 'ghi', 'Gohir.A03G044100' => 'ghi', 'Gohir.A04G083100' => 'ghi', 'Gohir.A07G127200' => 'ghi', 'Gohir.A07G132400' => 'ghi', 'Gohir.A08G000700' => 'ghi', 'Gohir.A11G327300' => 'ghi', 'Gohir.D01G211500' => 'ghi', 'Gohir.D03G123400' => 'ghi', 'Gohir.D03G123500' => 'ghi', 'Gohir.D04G121800' => 'ghi', 'Gohir.D07G131500' => 'ghi', 'Gohir.D07G136600' => 'ghi', 'Gohir.D08G011600' => 'ghi', 'Gohir.D11G346200' => 'ghi', 'Gorai.001G142800' => 'gra', 'Gorai.001G148700' => 'gra', 'Gorai.002G257300' => 'gra', 'Gorai.003G130000' => 'gra', 'Gorai.003G130100' => 'gra', 'Gorai.004G005300' => 'gra', 'Gorai.007G376500' => 'gra', 'Gorai.012G104700' => 'gra', 'GSVIVG01017946001' => 'vvi', 'GSVIVG01024928001' => 'vvi', 'GSVIVG01028227001' => 'vvi', 'GSVIVG01034151001' => 'vvi', 'HanXRQChr05g0135031' => 'han', 'HanXRQChr05g0135041' => 'han', 'HanXRQChr05g0140021' => 'han', 'HanXRQChr06g0178981' => 'han', 'HanXRQChr07g0188251' => 'han', 'HanXRQChr08g0235311' => 'han', 'HanXRQChr09g0271011' => 'han', 'HanXRQChr10g0293321' => 'han', 'HanXRQChr13g0388171' => 'han', 'Haze_00916' => 'cav', 'Haze_05063' => 'cav', 'Haze_20814' => 'cav', 'Haze_24128' => 'cav', 'Hma1.2p1_0745F.1_g212010' => 'hma', 'Hma1.2p1_0757F.1_g213260' => 'hma', 'Hma1.2p1_0936F.1_g238840' => 'hma', 'Hma1.2p1_1735F.1_g299890' => 'hma', 'Hma1.2p1_1861F.1_g305685' => 'hma', 'HPP92_003397' => 'vpl', 'HPP92_012597' => 'vpl', 'HPP92_015520' => 'vpl', 'HPP92_015539' => 'vpl', 'HPP92_020373' => 'vpl', 'Hund04938' => 'sun', 'Hund10677' => 'sun', 'Hund11033' => 'sun', 'Hund12155' => 'sun', 'Lalb_Chr01g0022551' => 'lal', 'Lalb_Chr03g0042341' => 'lal', 'Lalb_Chr07g0192931' => 'lal', 'Lalb_Chr12g0209551' => 'lal', 'Lalb_Chr19g0125251' => 'lal', 'Lalb_Chr19g0137891' => 'lal', 'Lalb_Chr21g0304641' => 'lal', 'Lalb_Chr21g0309881' => 'lal', 'Lj1A5T12' => 'lonja', 'Lj1C148G10' => 'lonja', 'Lj2A93T83' => 'lonja', 'Lj3A738G68' => 'lonja', 'Lj3C966T1' => 'lonja', 'Lj3g0018958' => 'lja', 'Lj3g0021831' => 'lja', 'Lj3g0025443' => 'lja', 'Lj4g0026809' => 'lja', 'Lj5g0012558' => 'lja', 'Lj5g0021586' => 'lja', 'Lsat_1_v5_gn_5_156840' => 'lsa', 'Lsat_1_v5_gn_8_73460' => 'lsa', 'Lsat_1_v5_gn_8_73481' => 'lsa', 'Lsat_1_v5_gn_9_31601' => 'lsa', 'Lsat_1_v5_gn_9_77320' => 'lsa', 'Manes.01G171300' => 'mes', 'Manes.01G171400' => 'mes', 'Manes.01G236100' => 'mes', 'Manes.02G130500' => 'mes', 'Manes.02G130600' => 'mes', 'Manes.03G180200' => 'mes', 'Manes.05G007000' => 'mes', 'Manes.08G084400' => 'mes', 'Manes.09G092600' => 'mes', 'Manes.15G027900' => 'mes', 'MBI04_g40948_MAGBIO' => 'mbi', 'MBI14_g12123_MAGBIO' => 'mbi', 'MBI18_g28915_MAGBIO' => 'mbi', 'MCO09G053' => 'mco', 'MCO11G782' => 'mco', 'MCO15G215' => 'mco', 'MD03G1088500' => 'mdo', 'MD03G1088600' => 'mdo', 'MD04G1130800' => 'mdo', 'MD09G1291700' => 'mdo', 'MD11G1097500' => 'mdo', 'MD11G1097600' => 'mdo', 'MD12G1143900' => 'mdo', 'MD13G1191400' => 'mdo', 'MD16G1191500' => 'mdo', 'Medtr1g085570' => 'mtr', 'Medtr1g104610' => 'mtr', 'Medtr2g097520' => 'mtr', 'Medtr4g021800' => 'mtr', 'Medtr4g021825' => 'mtr', 'Medtr4g064270' => 'mtr', 'Medtr4g064380' => 'mtr', 'Medtr7g062150' => 'mtr', 'MELO3C003138.2' => 'cme', 'MELO3C005187.2' => 'cme', 'MELO3C009252.2' => 'cme', 'MELO3C014481.2' => 'cme', 'MELO3C020616.2' => 'cme', 'MELO3C020617.2' => 'cme', 'MELO3C020618.2' => 'cme', 'Migut.G00328' => 'egut', 'Migut.J00320' => 'egut', 'Migut.L01000' => 'egut', 'Migut.L01953' => 'egut', 'MSTRG.10253' => 'ama', 'MSTRG.19077' => 'ama', 'MSTRG.26780' => 'ama', 'MSTRG.4023' => 'ama', 'MSTRG.5655' => 'ama', 'MSTRG.9992' => 'ama', 'Nitab4.5_0000043g0310' => 'nta', 'Nitab4.5_0000463g0080' => 'nta', 'Nitab4.5_0000705g0170' => 'nta', 'Nitab4.5_0001326g0060' => 'nta', 'Nitab4.5_0001628g0030' => 'nta', 'Nitab4.5_0002103g0110' => 'nta', 'Nitab4.5_0002946g0030' => 'nta', 'Nitab4.5_0004639g0030' => 'nta', 'Nn2g11149' => 'nnu', 'Nn2g13389' => 'nnu', 'Nn4g25326' => 'nnu', 'Nn4g26290' => 'nnu', 'Nn5g29865' => 'nnu', 'Oeu004163.1' => 'oeu', 'Oeu006901.1' => 'oeu', 'Oeu010096.1' => 'oeu', 'Oeu024340.1' => 'oeu', 'Oeu048369.1' => 'oeu', 'Os01g0973000' => 'osa', 'Os03g0273800' => 'osa', 'Os03g0701200' => 'osa', 'Os03g0834050' => 'osa', 'Os07g0634400' => 'osa', 'Peaxi162Scf00092g01414' => 'pax', 'Peaxi162Scf00165g00818' => 'pax', 'Peaxi162Scf00309g00516' => 'pax', 'Peaxi162Scf00774g00218' => 'pax', 'PGR004G1824' => 'pgr', 'PGR004G2606' => 'pgr', 'PGR031G2716' => 'pgr', 'PGR102G2460' => 'pgr', 'PGR142G2599' => 'pgr', 'PGSC0003DMG400000843' => 'stu', 'PGSC0003DMG400008829' => 'stu', 'PGSC0003DMG400030418' => 'stu', 'PGSC0003DMG400031834' => 'stu', 'PGSC0003DMG401028300' => 'stu', 'PGSC0003DMG402028300' => 'stu', 'Phvul.001G219300' => 'pvu', 'Phvul.007G056000' => 'pvu', 'Phvul.007G208000' => 'pvu', 'Phvul.008G119500' => 'pvu', 'Phvul.010G011200' => 'pvu', 'Phvul.010G014800' => 'pvu', 'Phvul.011G062900' => 'pvu', 'Phvul.L007043' => 'pvu', 'Potri.001G242300' => 'ptr', 'Potri.002G185300' => 'ptr', 'Potri.006G086900' => 'ptr', 'Potri.008G151700' => 'ptr', 'Potri.009G033500' => 'ptr', 'Potri.010G089300' => 'ptr', 'Potri.014G110800' => 'ptr', 'Pp3c27_8130' => 'ppa', 'Pp3c6_27410' => 'ppa', 'PRCOL_00001659' => 'pco', 'PRCOL_00001927' => 'pco', 'PRCOL_00003649' => 'pco', 'Prupe.1G011600' => 'ppe', 'Prupe.3G000800' => 'ppe', 'Prupe.3G001100' => 'ppe', 'Prupe.6G072700' => 'ppe', 'Prupe.6G072800' => 'ppe', 'Prupe.6G257300' => 'ppe', 'Prupe.8G033000' => 'ppe', 'Psat0s2633g0080' => 'psa', 'Psat0s3396g0080' => 'psa', 'Psat0s3396g0200' => 'psa', 'Psat3g139080' => 'psa', 'Psat5g285080' => 'psa', 'Psat6g157760' => 'psa', 'Psat6g208440' => 'psa', 'Psat7g215320' => 'psa', 'Psat7g215400' => 'psa', 'Psat7g235600' => 'psa', 'Psat7g235760' => 'psa', 'PSO063G4603' => 'pso', 'PSO210G0182' => 'pso', 'PSO210G0196' => 'pso', 'PSO339G0394' => 'pso', 'PSO339G4127' => 'pso', 'PSO513G0064' => 'pso', 'PSO761G0079' => 'pso', 'QL01p031003' => 'qlo', 'QL01p031078' => 'qlo', 'QL06p003004' => 'qlo', 'QL07p048731' => 'qlo', 'QL09p037427' => 'qlo', 'RcHm_v2.0_Chr3g0466361' => 'rch', 'RcHm_v2.0_Chr3g0485571' => 'rch', 'RcHm_v2.0_Chr4g0416551' => 'rch', 'RcHm_v2.0_Chr5g0065831' => 'rch', 'Rhsim01G0230500' => 'rsi', 'Rhsim05G0194000' => 'rsi', 'Rhsim08G0250400' => 'rsi', 'Sabra02G0131000' => 'sbr', 'Sabra06G0066300' => 'sbr', 'Sabra08G0115500' => 'sbr', 'Sabra09G0023900' => 'sbr', 'Sabra10G0054000' => 'sbr', 'Sabra14G0081500' => 'sbr', 'Sabra16G0147100' => 'sbr', 'SalBow2G2957' => 'sbo', 'SalBow4G3320' => 'sbo', 'SalBow8G1894' => 'sbo', 'Sc07g0007950' => 'sci', 'Sc12g0001360' => 'sci', 'Sc13g0004330' => 'sci', 'Sc20g0005010' => 'sci', 'Sed0000361' => 'sed', 'Sed0001706' => 'sed', 'Sed0002422' => 'sed', 'Sed0004029' => 'sed', 'Sed0004602' => 'sed', 'Sed0004943' => 'sed', 'Sed0008646' => 'sed', 'Sed0023313' => 'sed', 'Sed0024843' => 'sed', 'SEGI_00081' => 'sgi', 'SEGI_00947' => 'sgi', 'SEGI_04046' => 'sgi', 'SEGI_06880' => 'sgi', 'SEGI_09736' => 'sgi', 'SEGI_12741' => 'sgi', 'SEGI_14530' => 'sgi', 'SEGI_20705' => 'sgi', 'SEGI_26088' => 'sgi', 'SEGI_28323' => 'sgi', 'SEGI_33343' => 'sgi', 'SGA_v2.0_scaffold126G33775' => 'sas', 'SGA_v2.0_scaffold2G01337' => 'sas', 'SGA_v2.0_scaffold38G15006' => 'sas', 'SGA_v2.0_scaffold39G15264' => 'sas', 'SGA_v2.0_scaffold453G51880' => 'sas', 'SHI12696' => 'shi', 'SMO367G1096' => 'smo', 'Solyc01g068630.3' => 'sly', 'Solyc05g011880.3' => 'sly', 'Solyc06g076300.3' => 'sly', 'Solyc09g010940.4' => 'sly', 'Solyc09g075890.3' => 'sly', 'Sopen01g030560' => 'spe', 'Sopen05g006630' => 'spe', 'Sopen06g032720' => 'spe', 'Sopen09g005660' => 'spe', 'Sopen09g030690' => 'spe', 'Sp4g14540' => 'spa', 'Sp4g20030' => 'spa', 'Sp5g01320' => 'spa', 'Sp6g21170' => 'spa', 'Sp6g21180' => 'spa', 'Sp6g21190' => 'spa', 'Sp6g40220' => 'spa', 'TAR362G0122' => 'tar', 'TAR362G1338' => 'tar', 'TAR369G0590' => 'tar', 'TAR371G0824' => 'tar', 'TAR622G1429' => 'tar', 'TAR623G0734' => 'tar', 'TAR625G0441' => 'tar', 'TAR629G0976' => 'tar', 'TAR633G1195' => 'tar', 'TAR636G2660' => 'tar', 'THA.LOC104799440' => 'tha', 'THA.LOC104800966' => 'tha', 'THA.LOC104806559' => 'tha', 'THA.LOC104810765' => 'tha', 'THA.LOC104816266' => 'tha', 'THA.LOC104817419' => 'tha', 'THA.LOC104827021' => 'tha', 'Thecc.01G327400' => 'tca', 'Thecc.04G229200' => 'tca', 'Thecc.05G037400' => 'tca', 'Thecc.09G318600' => 'tca', 'Thecc.09G318700' => 'tca', 'Thhalv10006238m.g' => 'esa', 'Thhalv10014321m.g' => 'esa', 'Thhalv10014335m.g' => 'esa', 'Thhalv10015826m.g' => 'esa', 'Thhalv10017107m.g' => 'esa', 'Thhalv10017180m.g' => 'esa', 'Thhalv10029339m.g' => 'esa', 'TPR.G1699' => 'tpr', 'TPR.G23609' => 'tpr', 'TPR.G3081' => 'tpr', 'TPR.G40397' => 'tpr', 'TPR.G5522' => 'tpr', 'TPR.G5618' => 'tpr', 'TPR.G5626' => 'tpr', 'TWI09G1632' => 'twi', 'TWI23G1230' => 'twi', 'TWI53G1064' => 'twi', 'TWI59G0751' => 'twi', 'TWI74G0947' => 'twi', 'TWI77G0337' => 'twi', 'TWI79G1254' => 'twi', 'unitig_0.g2341' => 'ugi', 'unitig_26.g10006' => 'ugi', 'unitig_26.g10008' => 'ugi', 'unitig_26.g9192' => 'ugi', 'vmacro14547' => 'vma', 'vmacro15333' => 'vma', 'vmacro18743' => 'vma', 'vmacro20166' => 'vma', 'VMungo0331G0523' => 'vmu', 'VMungo0331G1202' => 'vmu', 'VMungo0720G1228' => 'vmu', 'VMungo0720G1514' => 'vmu', 'VMungo1080G0169' => 'vmu', 'VMungo1127G1475' => 'vmu', 'VMungo1383G1208' => 'vmu', 'VMungo1383G1698' => 'vmu', 'Zm00001eb012270' => 'zma', 'Zm00001eb054100' => 'zma', 'Zm00001eb063350' => 'zma', 'Zm00001eb328560' => 'zma', 'Zm00001eb342820' => 'zma', 'Zm00001eb362210' => 'zma', 'Zm00001eb397730' => 'zma', 'Zm00001eb399750' => 'zma' ) $gf_id = 'HOM05D000959' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000959' ) $data_identifier = 'HOM05D000959' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 5, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 5, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 10, 'mbi' => (int) 3, 'mco' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 2, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 3, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 11, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399750' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000959', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '622', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p07100' => 'bna', 'A03p11720' => 'bna', 'A05p08300' => 'bna', 'A05p13380' => 'bna', 'A09p54130' => 'bna', 'A10p16690' => 'bna', 'A10p16700' => 'bna', 'A10p33390' => 'bna', 'Aa31LG10G16020' => 'aar', 'Aa31LG1G11810' => 'aar', 'Aa31LG1G11830' => 'aar', 'Aa31LG1G22510' => 'aar', 'Aa31LG5G4890' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5793' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2310' => 'aag', 'Actinidia08499' => 'ach', 'Actinidia11262' => 'ach', 'Actinidia23926' => 'ach', 'Actinidia34420' => 'ach', 'Actinidia36970' => 'ach', 'Ah.02g111220' => 'amhyb', 'Ah.15g097750' => 'amhyb', 'AL4G27500' => 'aly', 'AL6G11470' => 'aly', 'AL8G35950' => 'aly', 'AL8G35960' => 'aly', 'AL8G35970' => 'aly', 'Aqoxy1G00912' => 'aox', 'Aqoxy2G02253' => 'aox', 'Aqoxy2G02411' => 'aox', 'Aqoxy5G00485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BZ66YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K8ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM4FUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6BF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HFV7XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25JBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0YNNV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MAKK6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P70IT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP2Z6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V61LZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YWP64R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3S9AI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7PGHH' => 'arhy', 'AT2G32150' => 'ath', 'AT3G62040' => 'ath', 'AT5G02230' => 'ath', 'AT5G59480' => 'ath', 'AT5G59490' => 'ath', 'ATR0332G060' => 'atr', 'ATR0559G190' => 'atr', 'ATR0693G294' => 'atr', 'Atru.chr3.3975' => 'acertr', 'Atru.chr3.3976' => 'acertr', 'Atru.chr3.3977' => 'acertr', 'Atru.chr4.2498' => 'acertr', 'Atru.chr5.838' => 'acertr', 'Atru.chr8.1990' => 'acertr', 'Atru.chr8.1991' => 'acertr', 'Atru.chr8.1992' => 'acertr', 'AUR62001759' => 'cqu', 'AUR62009545' => 'cqu', 'AUR62010474' => 'cqu', 'AUR62025820' => 'cqu', 'AUR62030422' => 'cqu', 'AUR62033605' => 'cqu', 'AUR62038615' => 'cqu', 'AUR62041347' => 'cqu', 'BcaB01g04574' => 'bca', 'BcaB02g09263' => 'bca', 'BcaB02g10453' => 'bca', 'BcaB05g22513' => 'bca', 'BcaB08g36253' => 'bca', 'BcaB08g36254' => 'bca', 'BcaC01g06519' => 'bca', 'BcaC02g11889' => 'bca', 'BcaC03g14010' => 'bca', 'BcaC03g18439' => 'bca', 'BcaC04g19765' => 'bca', 'BcaC09g48432' => 'bca', 'BcaNung07302' => 'bca', 'BolC2t06040H' => 'bol', 'BolC2t07346H' => 'bol', 'BolC3t13817H' => 'bol', 'BolC4t22625H' => 'bol', 'BolC4t23297H' => 'bol', 'BolC8t51278H' => 'bol', 'BolC9t58050H' => 'bol', 'BolC9t58051H' => 'bol', 'BolC9t60163H' => 'bol', 'BraA02t04712Z' => 'bra', 'BraA02t05791Z' => 'bra', 'BraA03t10483Z' => 'bra', 'BraA05t19795Z' => 'bra', 'BraA05t20276Z' => 'bra', 'BraA09t40827Z' => 'bra', 'BraA10t43750Z' => 'bra', 'BraA10t43751Z' => 'bra', 'BraA10t45370Z' => 'bra', 'C02p00400' => 'bna', 'C02p12460' => 'bna', 'C03p13680' => 'bna', 'C04p10270' => 'bna', 'C04p17500' => 'bna', 'C08p37010' => 'bna', 'C09p51880' => 'bna', 'C09p51890' => 'bna', 'C09p74300' => 'bna', 'CAN.G179.26' => 'can', 'CAN.G3384.1' => 'can', 'CAN.G394.68' => 'can', 'CAN.G907.13' => 'can', 'CANSAT11G0012' => 'cansat', 'CANSAT25G1586' => 'cansat', 'CANSAT35G0735' => 'cansat', 'CANSAT54G0556' => 'cansat', 'CANSAT64G0356' => 'cansat', 'CANSAT78G2042' => 'cansat', 'CARHR125920' => 'chi', 'CARHR131910' => 'chi', 'CARHR172390' => 'chi', 'CARHR211140' => 'chi', 'CARHR285850' => 'chi', 'CARHR285860' => 'chi', 'Carub.0004s1347' => 'cru', 'Carub.0004s1960' => 'cru', 'Carub.0005s2880' => 'cru', 'Carub.0006s0107' => 'cru', 'Carub.0008s2015' => 'cru', 'Carub.0008s2016' => 'cru', 'Carub.0008s2017' => 'cru', 'Ca_01315_v3' => 'car', 'Ca_05063_v3' => 'car', 'Ca_10231_v3' => 'car', 'Ca_10913_v3' => 'car', 'Ca_19156_v3' => 'car', 'Ca_23644_v3' => 'car', 'Ca_26735_v3' => 'car', 'Cc01_g13130' => 'ccan', 'Cc02_g21690' => 'ccan', 'Cc03_g03600' => 'ccan', 'Cc06_g02510' => 'ccan', 'CDE02G1265' => 'cde', 'CDE05G0415' => 'cde', 'CDE08G1082' => 'cde', 'Cfa005780' => 'cfa', 'Cfa011522' => 'cfa', 'Cfa011523' => 'cfa', 'Cfa015627' => 'cfa', 'Cfa017359' => 'cfa', 'Ciclev10005687m.g' => 'ccl', 'Ciclev10012173m.g' => 'ccl', 'Ciclev10021621m.g' => 'ccl', 'Ciclev10028968m.g' => 'ccl', 'Ciclev10029907m.g' => 'ccl', 'CiPaw.01G164800' => 'cil', 'CiPaw.07G083700' => 'cil', 'CiPaw.07G127000' => 'cil', 'CiPaw.07G136900' => 'cil', 'CiPaw.08G081700' => 'cil', 'CiPaw.09G194600' => 'cil', 'CiPaw.10G146500' => 'cil', 'CiPaw.13G091500' => 'cil', 'CiPaw.13G091600' => 'cil', 'ClCG00G003390' => 'cla', 'ClCG01G007220' => 'cla', 'ClCG03G001370' => 'cla', 'ClCG04G008100' => 'cla', 'ClCG06G006110' => 'cla', 'ClCG06G006130' => 'cla', 'ClCG10G021210' => 'cla', 'COL.COLO4_07648' => 'col', 'COL.COLO4_07650' => 'col', 'COL.COLO4_07651' => 'col', 'COL.COLO4_14780' => 'col', 'COL.COLO4_18546' => 'col', 'COL.COLO4_18547' => 'col', 'COL.COLO4_23103' => 'col', 'COL.COLO4_30419' => 'col', 'COL.COLO4_34232' => 'col', 'Cpa.g.sc169.20' => 'cpa', 'Cpa.g.sc57.45' => 'cpa', 'Cpa.g.sc58.124' => 'cpa', 'Cpa.g.sc58.125' => 'cpa', 'Cpa.g.sc81.118' => 'cpa', 'Cpa.g.sc81.119' => 'cpa', 'Cre12.g524700' => 'cre', 'CsaV3_1G034430' => 'csa', 'CsaV3_1G034440' => 'csa', 'CsaV3_1G034450' => 'csa', 'CsaV3_3G034830' => 'csa', 'CsaV3_4G025090' => 'csa', 'CsaV3_5G018660' => 'csa', 'CsaV3_6G038160' => 'csa', 'CSS0003447' => 'camsi', 'CSS0017840' => 'camsi', 'CSS0019260' => 'camsi', 'CSS0040375' => 'camsi', 'CSS0042533' => 'camsi', 'DCAR_005960' => 'dca', 'DCAR_012104' => 'dca', 'DCAR_012105' => 'dca', 'DCAR_012293' => 'dca', 'DCAR_015632' => 'dca', 'DCAR_024602' => 'dca', 'DCAR_028752' => 'dca', 'Dinv06261' => 'din', 'Dinv13982' => 'din', 'Dinv17029' => 'din', 'Dinv18463' => 'din', 'Dinv33181' => 'din', 'Dinv35585' => 'din', 'Dinv37161' => 'din', 'Dinv42977' => 'din', 'Dinv43122' => 'din', 'Dinv44517' => 'din', 'Duzib093G0256' => 'dzi', 'Duzib106G1254' => 'dzi', 'Duzib128G1789' => 'dzi', 'Duzib133G0633' => 'dzi', 'Duzib138G0510' => 'dzi', 'Duzib150G1084' => 'dzi', 'Duzib168G0488' => 'dzi', 'Duzib168G1523' => 'dzi', 'Duzib170G0133' => 'dzi', 'ECA234G1433' => 'eca', 'ECA236G1432' => 'eca', 'ECA236G2256' => 'eca', 'ECA236G2365' => 'eca', 'ECA236G4830' => 'eca', 'ECA248G1505' => 'eca', 'EL10Ac3g06431' => 'bvu', 'EL10Ac5g12577' => 'bvu', 'EL10Ac6g13533' => 'bvu', 'EL10Ac7g16045' => 'bvu', 'Eucgr.A01281' => 'egr', 'Eucgr.B02326' => 'egr', 'Eucgr.H03532' => 'egr', 'Eucgr.K00553' => 'egr', 'Eucgr.K03116' => 'egr', 'FAN02G3963' => 'fan', 'FAN05G0438' => 'fan', 'FAN09G2434' => 'fan', 'FAN12G3984' => 'fan', 'FAN14G0798' => 'fan', 'FAN17G0652' => 'fan', 'FAN19G1988' => 'fan', 'FAN22G0632' => 'fan', 'FAN23G0387' => 'fan', 'FAN26G1323' => 'fan', 'FAN28G0666' => 'fan', 'FvH4_1g26080' => 'fve', 'FvH4_3g36780' => 'fve', 'FvH4_4g15270' => 'fve', 'FvH4_6g13490' => 'fve', 'Glyma.01G098700' => 'gma', 'Glyma.03G065900' => 'gma', 'Glyma.03G073754' => 'gma', 'Glyma.03G073758' => 'gma', 'Glyma.03G083200' => 'gma', 'Glyma.03G225500' => 'gma', 'Glyma.05G037766' => 'gma', 'Glyma.07G133500' => 'gma', 'Glyma.10G139400' => 'gma', 'Glyma.10G248900' => 'gma', 'Glyma.11G137800' => 'gma', 'Glyma.12G061300' => 'gma', 'Glyma.13G337900' => 'gma', 'Glyma.15G036600' => 'gma', 'Glyma.18G182800' => 'gma', 'Glyma.19G222500' => 'gma', 'Glyma.20G144800' => 'gma', 'Gohir.A01G222000' => 'ghi', 'Gohir.A03G044000' => 'ghi', 'Gohir.A03G044100' => 'ghi', 'Gohir.A04G083100' => 'ghi', 'Gohir.A07G127200' => 'ghi', 'Gohir.A07G132400' => 'ghi', 'Gohir.A08G000700' => 'ghi', 'Gohir.A11G327300' => 'ghi', 'Gohir.D01G211500' => 'ghi', 'Gohir.D03G123400' => 'ghi', 'Gohir.D03G123500' => 'ghi', 'Gohir.D04G121800' => 'ghi', 'Gohir.D07G131500' => 'ghi', 'Gohir.D07G136600' => 'ghi', 'Gohir.D08G011600' => 'ghi', 'Gohir.D11G346200' => 'ghi', 'Gorai.001G142800' => 'gra', 'Gorai.001G148700' => 'gra', 'Gorai.002G257300' => 'gra', 'Gorai.003G130000' => 'gra', 'Gorai.003G130100' => 'gra', 'Gorai.004G005300' => 'gra', 'Gorai.007G376500' => 'gra', 'Gorai.012G104700' => 'gra', 'GSVIVG01017946001' => 'vvi', 'GSVIVG01024928001' => 'vvi', 'GSVIVG01028227001' => 'vvi', 'GSVIVG01034151001' => 'vvi', 'HanXRQChr05g0135031' => 'han', 'HanXRQChr05g0135041' => 'han', 'HanXRQChr05g0140021' => 'han', 'HanXRQChr06g0178981' => 'han', 'HanXRQChr07g0188251' => 'han', 'HanXRQChr08g0235311' => 'han', 'HanXRQChr09g0271011' => 'han', 'HanXRQChr10g0293321' => 'han', 'HanXRQChr13g0388171' => 'han', 'Haze_00916' => 'cav', 'Haze_05063' => 'cav', 'Haze_20814' => 'cav', 'Haze_24128' => 'cav', 'Hma1.2p1_0745F.1_g212010' => 'hma', 'Hma1.2p1_0757F.1_g213260' => 'hma', 'Hma1.2p1_0936F.1_g238840' => 'hma', 'Hma1.2p1_1735F.1_g299890' => 'hma', 'Hma1.2p1_1861F.1_g305685' => 'hma', 'HPP92_003397' => 'vpl', 'HPP92_012597' => 'vpl', 'HPP92_015520' => 'vpl', 'HPP92_015539' => 'vpl', 'HPP92_020373' => 'vpl', 'Hund04938' => 'sun', 'Hund10677' => 'sun', 'Hund11033' => 'sun', 'Hund12155' => 'sun', 'Lalb_Chr01g0022551' => 'lal', 'Lalb_Chr03g0042341' => 'lal', 'Lalb_Chr07g0192931' => 'lal', 'Lalb_Chr12g0209551' => 'lal', 'Lalb_Chr19g0125251' => 'lal', 'Lalb_Chr19g0137891' => 'lal', 'Lalb_Chr21g0304641' => 'lal', 'Lalb_Chr21g0309881' => 'lal', 'Lj1A5T12' => 'lonja', 'Lj1C148G10' => 'lonja', 'Lj2A93T83' => 'lonja', 'Lj3A738G68' => 'lonja', 'Lj3C966T1' => 'lonja', 'Lj3g0018958' => 'lja', 'Lj3g0021831' => 'lja', 'Lj3g0025443' => 'lja', 'Lj4g0026809' => 'lja', 'Lj5g0012558' => 'lja', 'Lj5g0021586' => 'lja', 'Lsat_1_v5_gn_5_156840' => 'lsa', 'Lsat_1_v5_gn_8_73460' => 'lsa', 'Lsat_1_v5_gn_8_73481' => 'lsa', 'Lsat_1_v5_gn_9_31601' => 'lsa', 'Lsat_1_v5_gn_9_77320' => 'lsa', 'Manes.01G171300' => 'mes', 'Manes.01G171400' => 'mes', 'Manes.01G236100' => 'mes', 'Manes.02G130500' => 'mes', 'Manes.02G130600' => 'mes', 'Manes.03G180200' => 'mes', 'Manes.05G007000' => 'mes', 'Manes.08G084400' => 'mes', 'Manes.09G092600' => 'mes', 'Manes.15G027900' => 'mes', 'MBI04_g40948_MAGBIO' => 'mbi', 'MBI14_g12123_MAGBIO' => 'mbi', 'MBI18_g28915_MAGBIO' => 'mbi', 'MCO09G053' => 'mco', 'MCO11G782' => 'mco', 'MCO15G215' => 'mco', 'MD03G1088500' => 'mdo', 'MD03G1088600' => 'mdo', 'MD04G1130800' => 'mdo', 'MD09G1291700' => 'mdo', 'MD11G1097500' => 'mdo', 'MD11G1097600' => 'mdo', 'MD12G1143900' => 'mdo', 'MD13G1191400' => 'mdo', 'MD16G1191500' => 'mdo', 'Medtr1g085570' => 'mtr', 'Medtr1g104610' => 'mtr', 'Medtr2g097520' => 'mtr', 'Medtr4g021800' => 'mtr', 'Medtr4g021825' => 'mtr', 'Medtr4g064270' => 'mtr', 'Medtr4g064380' => 'mtr', 'Medtr7g062150' => 'mtr', 'MELO3C003138.2' => 'cme', 'MELO3C005187.2' => 'cme', 'MELO3C009252.2' => 'cme', 'MELO3C014481.2' => 'cme', 'MELO3C020616.2' => 'cme', 'MELO3C020617.2' => 'cme', 'MELO3C020618.2' => 'cme', 'Migut.G00328' => 'egut', 'Migut.J00320' => 'egut', 'Migut.L01000' => 'egut', 'Migut.L01953' => 'egut', 'MSTRG.10253' => 'ama', 'MSTRG.19077' => 'ama', 'MSTRG.26780' => 'ama', 'MSTRG.4023' => 'ama', 'MSTRG.5655' => 'ama', 'MSTRG.9992' => 'ama', 'Nitab4.5_0000043g0310' => 'nta', 'Nitab4.5_0000463g0080' => 'nta', 'Nitab4.5_0000705g0170' => 'nta', 'Nitab4.5_0001326g0060' => 'nta', 'Nitab4.5_0001628g0030' => 'nta', 'Nitab4.5_0002103g0110' => 'nta', 'Nitab4.5_0002946g0030' => 'nta', 'Nitab4.5_0004639g0030' => 'nta', 'Nn2g11149' => 'nnu', 'Nn2g13389' => 'nnu', 'Nn4g25326' => 'nnu', 'Nn4g26290' => 'nnu', 'Nn5g29865' => 'nnu', 'Oeu004163.1' => 'oeu', 'Oeu006901.1' => 'oeu', 'Oeu010096.1' => 'oeu', 'Oeu024340.1' => 'oeu', 'Oeu048369.1' => 'oeu', 'Os01g0973000' => 'osa', 'Os03g0273800' => 'osa', 'Os03g0701200' => 'osa', 'Os03g0834050' => 'osa', 'Os07g0634400' => 'osa', 'Peaxi162Scf00092g01414' => 'pax', 'Peaxi162Scf00165g00818' => 'pax', 'Peaxi162Scf00309g00516' => 'pax', 'Peaxi162Scf00774g00218' => 'pax', 'PGR004G1824' => 'pgr', 'PGR004G2606' => 'pgr', 'PGR031G2716' => 'pgr', 'PGR102G2460' => 'pgr', 'PGR142G2599' => 'pgr', 'PGSC0003DMG400000843' => 'stu', 'PGSC0003DMG400008829' => 'stu', 'PGSC0003DMG400030418' => 'stu', 'PGSC0003DMG400031834' => 'stu', 'PGSC0003DMG401028300' => 'stu', 'PGSC0003DMG402028300' => 'stu', 'Phvul.001G219300' => 'pvu', 'Phvul.007G056000' => 'pvu', 'Phvul.007G208000' => 'pvu', 'Phvul.008G119500' => 'pvu', 'Phvul.010G011200' => 'pvu', 'Phvul.010G014800' => 'pvu', 'Phvul.011G062900' => 'pvu', 'Phvul.L007043' => 'pvu', 'Potri.001G242300' => 'ptr', 'Potri.002G185300' => 'ptr', 'Potri.006G086900' => 'ptr', 'Potri.008G151700' => 'ptr', 'Potri.009G033500' => 'ptr', 'Potri.010G089300' => 'ptr', 'Potri.014G110800' => 'ptr', 'Pp3c27_8130' => 'ppa', 'Pp3c6_27410' => 'ppa', 'PRCOL_00001659' => 'pco', 'PRCOL_00001927' => 'pco', 'PRCOL_00003649' => 'pco', 'Prupe.1G011600' => 'ppe', 'Prupe.3G000800' => 'ppe', 'Prupe.3G001100' => 'ppe', 'Prupe.6G072700' => 'ppe', 'Prupe.6G072800' => 'ppe', 'Prupe.6G257300' => 'ppe', 'Prupe.8G033000' => 'ppe', 'Psat0s2633g0080' => 'psa', 'Psat0s3396g0080' => 'psa', 'Psat0s3396g0200' => 'psa', 'Psat3g139080' => 'psa', 'Psat5g285080' => 'psa', 'Psat6g157760' => 'psa', 'Psat6g208440' => 'psa', 'Psat7g215320' => 'psa', 'Psat7g215400' => 'psa', 'Psat7g235600' => 'psa', 'Psat7g235760' => 'psa', 'PSO063G4603' => 'pso', 'PSO210G0182' => 'pso', 'PSO210G0196' => 'pso', 'PSO339G0394' => 'pso', 'PSO339G4127' => 'pso', 'PSO513G0064' => 'pso', 'PSO761G0079' => 'pso', 'QL01p031003' => 'qlo', 'QL01p031078' => 'qlo', 'QL06p003004' => 'qlo', 'QL07p048731' => 'qlo', 'QL09p037427' => 'qlo', 'RcHm_v2.0_Chr3g0466361' => 'rch', 'RcHm_v2.0_Chr3g0485571' => 'rch', 'RcHm_v2.0_Chr4g0416551' => 'rch', 'RcHm_v2.0_Chr5g0065831' => 'rch', 'Rhsim01G0230500' => 'rsi', 'Rhsim05G0194000' => 'rsi', 'Rhsim08G0250400' => 'rsi', 'Sabra02G0131000' => 'sbr', 'Sabra06G0066300' => 'sbr', 'Sabra08G0115500' => 'sbr', 'Sabra09G0023900' => 'sbr', 'Sabra10G0054000' => 'sbr', 'Sabra14G0081500' => 'sbr', 'Sabra16G0147100' => 'sbr', 'SalBow2G2957' => 'sbo', 'SalBow4G3320' => 'sbo', 'SalBow8G1894' => 'sbo', 'Sc07g0007950' => 'sci', 'Sc12g0001360' => 'sci', 'Sc13g0004330' => 'sci', 'Sc20g0005010' => 'sci', 'Sed0000361' => 'sed', 'Sed0001706' => 'sed', 'Sed0002422' => 'sed', 'Sed0004029' => 'sed', 'Sed0004602' => 'sed', 'Sed0004943' => 'sed', 'Sed0008646' => 'sed', 'Sed0023313' => 'sed', 'Sed0024843' => 'sed', 'SEGI_00081' => 'sgi', 'SEGI_00947' => 'sgi', 'SEGI_04046' => 'sgi', 'SEGI_06880' => 'sgi', 'SEGI_09736' => 'sgi', 'SEGI_12741' => 'sgi', 'SEGI_14530' => 'sgi', 'SEGI_20705' => 'sgi', 'SEGI_26088' => 'sgi', 'SEGI_28323' => 'sgi', 'SEGI_33343' => 'sgi', 'SGA_v2.0_scaffold126G33775' => 'sas', 'SGA_v2.0_scaffold2G01337' => 'sas', 'SGA_v2.0_scaffold38G15006' => 'sas', 'SGA_v2.0_scaffold39G15264' => 'sas', 'SGA_v2.0_scaffold453G51880' => 'sas', 'SHI12696' => 'shi', 'SMO367G1096' => 'smo', 'Solyc01g068630.3' => 'sly', 'Solyc05g011880.3' => 'sly', 'Solyc06g076300.3' => 'sly', 'Solyc09g010940.4' => 'sly', 'Solyc09g075890.3' => 'sly', 'Sopen01g030560' => 'spe', 'Sopen05g006630' => 'spe', 'Sopen06g032720' => 'spe', 'Sopen09g005660' => 'spe', 'Sopen09g030690' => 'spe', 'Sp4g14540' => 'spa', 'Sp4g20030' => 'spa', 'Sp5g01320' => 'spa', 'Sp6g21170' => 'spa', 'Sp6g21180' => 'spa', 'Sp6g21190' => 'spa', 'Sp6g40220' => 'spa', 'TAR362G0122' => 'tar', 'TAR362G1338' => 'tar', 'TAR369G0590' => 'tar', 'TAR371G0824' => 'tar', 'TAR622G1429' => 'tar', 'TAR623G0734' => 'tar', 'TAR625G0441' => 'tar', 'TAR629G0976' => 'tar', 'TAR633G1195' => 'tar', 'TAR636G2660' => 'tar', 'THA.LOC104799440' => 'tha', 'THA.LOC104800966' => 'tha', 'THA.LOC104806559' => 'tha', 'THA.LOC104810765' => 'tha', 'THA.LOC104816266' => 'tha', 'THA.LOC104817419' => 'tha', 'THA.LOC104827021' => 'tha', 'Thecc.01G327400' => 'tca', 'Thecc.04G229200' => 'tca', 'Thecc.05G037400' => 'tca', 'Thecc.09G318600' => 'tca', 'Thecc.09G318700' => 'tca', 'Thhalv10006238m.g' => 'esa', 'Thhalv10014321m.g' => 'esa', 'Thhalv10014335m.g' => 'esa', 'Thhalv10015826m.g' => 'esa', 'Thhalv10017107m.g' => 'esa', 'Thhalv10017180m.g' => 'esa', 'Thhalv10029339m.g' => 'esa', 'TPR.G1699' => 'tpr', 'TPR.G23609' => 'tpr', 'TPR.G3081' => 'tpr', 'TPR.G40397' => 'tpr', 'TPR.G5522' => 'tpr', 'TPR.G5618' => 'tpr', 'TPR.G5626' => 'tpr', 'TWI09G1632' => 'twi', 'TWI23G1230' => 'twi', 'TWI53G1064' => 'twi', 'TWI59G0751' => 'twi', 'TWI74G0947' => 'twi', 'TWI77G0337' => 'twi', 'TWI79G1254' => 'twi', 'unitig_0.g2341' => 'ugi', 'unitig_26.g10006' => 'ugi', 'unitig_26.g10008' => 'ugi', 'unitig_26.g9192' => 'ugi', 'vmacro14547' => 'vma', 'vmacro15333' => 'vma', 'vmacro18743' => 'vma', 'vmacro20166' => 'vma', 'VMungo0331G0523' => 'vmu', 'VMungo0331G1202' => 'vmu', 'VMungo0720G1228' => 'vmu', 'VMungo0720G1514' => 'vmu', 'VMungo1080G0169' => 'vmu', 'VMungo1127G1475' => 'vmu', 'VMungo1383G1208' => 'vmu', 'VMungo1383G1698' => 'vmu', 'Zm00001eb012270' => 'zma', 'Zm00001eb054100' => 'zma', 'Zm00001eb063350' => 'zma', 'Zm00001eb328560' => 'zma', 'Zm00001eb342820' => 'zma', 'Zm00001eb362210' => 'zma', 'Zm00001eb397730' => 'zma', 'Zm00001eb399750' => 'zma' ), 'gf_id' => 'HOM05D000959', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000959' ), 'data_identifier' => 'HOM05D000959', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000959', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '622', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p07100' => 'bna', 'A03p11720' => 'bna', 'A05p08300' => 'bna', 'A05p13380' => 'bna', 'A09p54130' => 'bna', 'A10p16690' => 'bna', 'A10p16700' => 'bna', 'A10p33390' => 'bna', 'Aa31LG10G16020' => 'aar', 'Aa31LG1G11810' => 'aar', 'Aa31LG1G11830' => 'aar', 'Aa31LG1G22510' => 'aar', 'Aa31LG5G4890' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5793' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2310' => 'aag', 'Actinidia08499' => 'ach', 'Actinidia11262' => 'ach', 'Actinidia23926' => 'ach', 'Actinidia34420' => 'ach', 'Actinidia36970' => 'ach', 'Ah.02g111220' => 'amhyb', 'Ah.15g097750' => 'amhyb', 'AL4G27500' => 'aly', 'AL6G11470' => 'aly', 'AL8G35950' => 'aly', 'AL8G35960' => 'aly', 'AL8G35970' => 'aly', 'Aqoxy1G00912' => 'aox', 'Aqoxy2G02253' => 'aox', 'Aqoxy2G02411' => 'aox', 'Aqoxy5G00485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BZ66YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K8ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM4FUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6BF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HFV7XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25JBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0YNNV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MAKK6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P70IT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP2Z6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V61LZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YWP64R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3S9AI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7PGHH' => 'arhy', 'AT2G32150' => 'ath', 'AT3G62040' => 'ath', 'AT5G02230' => 'ath', 'AT5G59480' => 'ath', 'AT5G59490' => 'ath', 'ATR0332G060' => 'atr', 'ATR0559G190' => 'atr', 'ATR0693G294' => 'atr', 'Atru.chr3.3975' => 'acertr', 'Atru.chr3.3976' => 'acertr', 'Atru.chr3.3977' => 'acertr', 'Atru.chr4.2498' => 'acertr', 'Atru.chr5.838' => 'acertr', 'Atru.chr8.1990' => 'acertr', 'Atru.chr8.1991' => 'acertr', 'Atru.chr8.1992' => 'acertr', 'AUR62001759' => 'cqu', 'AUR62009545' => 'cqu', 'AUR62010474' => 'cqu', 'AUR62025820' => 'cqu', 'AUR62030422' => 'cqu', 'AUR62033605' => 'cqu', 'AUR62038615' => 'cqu', 'AUR62041347' => 'cqu', 'BcaB01g04574' => 'bca', 'BcaB02g09263' => 'bca', 'BcaB02g10453' => 'bca', 'BcaB05g22513' => 'bca', 'BcaB08g36253' => 'bca', 'BcaB08g36254' => 'bca', 'BcaC01g06519' => 'bca', 'BcaC02g11889' => 'bca', 'BcaC03g14010' => 'bca', 'BcaC03g18439' => 'bca', 'BcaC04g19765' => 'bca', 'BcaC09g48432' => 'bca', 'BcaNung07302' => 'bca', 'BolC2t06040H' => 'bol', 'BolC2t07346H' => 'bol', 'BolC3t13817H' => 'bol', 'BolC4t22625H' => 'bol', 'BolC4t23297H' => 'bol', 'BolC8t51278H' => 'bol', 'BolC9t58050H' => 'bol', 'BolC9t58051H' => 'bol', 'BolC9t60163H' => 'bol', 'BraA02t04712Z' => 'bra', 'BraA02t05791Z' => 'bra', 'BraA03t10483Z' => 'bra', 'BraA05t19795Z' => 'bra', 'BraA05t20276Z' => 'bra', 'BraA09t40827Z' => 'bra', 'BraA10t43750Z' => 'bra', 'BraA10t43751Z' => 'bra', 'BraA10t45370Z' => 'bra', 'C02p00400' => 'bna', 'C02p12460' => 'bna', 'C03p13680' => 'bna', 'C04p10270' => 'bna', 'C04p17500' => 'bna', 'C08p37010' => 'bna', 'C09p51880' => 'bna', 'C09p51890' => 'bna', 'C09p74300' => 'bna', 'CAN.G179.26' => 'can', 'CAN.G3384.1' => 'can', 'CAN.G394.68' => 'can', 'CAN.G907.13' => 'can', 'CANSAT11G0012' => 'cansat', 'CANSAT25G1586' => 'cansat', 'CANSAT35G0735' => 'cansat', 'CANSAT54G0556' => 'cansat', 'CANSAT64G0356' => 'cansat', 'CANSAT78G2042' => 'cansat', 'CARHR125920' => 'chi', 'CARHR131910' => 'chi', 'CARHR172390' => 'chi', 'CARHR211140' => 'chi', 'CARHR285850' => 'chi', 'CARHR285860' => 'chi', 'Carub.0004s1347' => 'cru', 'Carub.0004s1960' => 'cru', 'Carub.0005s2880' => 'cru', 'Carub.0006s0107' => 'cru', 'Carub.0008s2015' => 'cru', 'Carub.0008s2016' => 'cru', 'Carub.0008s2017' => 'cru', 'Ca_01315_v3' => 'car', 'Ca_05063_v3' => 'car', 'Ca_10231_v3' => 'car', 'Ca_10913_v3' => 'car', 'Ca_19156_v3' => 'car', 'Ca_23644_v3' => 'car', 'Ca_26735_v3' => 'car', 'Cc01_g13130' => 'ccan', 'Cc02_g21690' => 'ccan', 'Cc03_g03600' => 'ccan', 'Cc06_g02510' => 'ccan', 'CDE02G1265' => 'cde', 'CDE05G0415' => 'cde', 'CDE08G1082' => 'cde', 'Cfa005780' => 'cfa', 'Cfa011522' => 'cfa', 'Cfa011523' => 'cfa', 'Cfa015627' => 'cfa', 'Cfa017359' => 'cfa', 'Ciclev10005687m.g' => 'ccl', 'Ciclev10012173m.g' => 'ccl', 'Ciclev10021621m.g' => 'ccl', 'Ciclev10028968m.g' => 'ccl', 'Ciclev10029907m.g' => 'ccl', 'CiPaw.01G164800' => 'cil', 'CiPaw.07G083700' => 'cil', 'CiPaw.07G127000' => 'cil', 'CiPaw.07G136900' => 'cil', 'CiPaw.08G081700' => 'cil', 'CiPaw.09G194600' => 'cil', 'CiPaw.10G146500' => 'cil', 'CiPaw.13G091500' => 'cil', 'CiPaw.13G091600' => 'cil', 'ClCG00G003390' => 'cla', 'ClCG01G007220' => 'cla', 'ClCG03G001370' => 'cla', 'ClCG04G008100' => 'cla', 'ClCG06G006110' => 'cla', 'ClCG06G006130' => 'cla', 'ClCG10G021210' => 'cla', 'COL.COLO4_07648' => 'col', 'COL.COLO4_07650' => 'col', 'COL.COLO4_07651' => 'col', 'COL.COLO4_14780' => 'col', 'COL.COLO4_18546' => 'col', 'COL.COLO4_18547' => 'col', 'COL.COLO4_23103' => 'col', 'COL.COLO4_30419' => 'col', 'COL.COLO4_34232' => 'col', 'Cpa.g.sc169.20' => 'cpa', 'Cpa.g.sc57.45' => 'cpa', 'Cpa.g.sc58.124' => 'cpa', 'Cpa.g.sc58.125' => 'cpa', 'Cpa.g.sc81.118' => 'cpa', 'Cpa.g.sc81.119' => 'cpa', 'Cre12.g524700' => 'cre', 'CsaV3_1G034430' => 'csa', 'CsaV3_1G034440' => 'csa', 'CsaV3_1G034450' => 'csa', 'CsaV3_3G034830' => 'csa', 'CsaV3_4G025090' => 'csa', 'CsaV3_5G018660' => 'csa', 'CsaV3_6G038160' => 'csa', 'CSS0003447' => 'camsi', 'CSS0017840' => 'camsi', 'CSS0019260' => 'camsi', 'CSS0040375' => 'camsi', 'CSS0042533' => 'camsi', 'DCAR_005960' => 'dca', 'DCAR_012104' => 'dca', 'DCAR_012105' => 'dca', 'DCAR_012293' => 'dca', 'DCAR_015632' => 'dca', 'DCAR_024602' => 'dca', 'DCAR_028752' => 'dca', 'Dinv06261' => 'din', 'Dinv13982' => 'din', 'Dinv17029' => 'din', 'Dinv18463' => 'din', 'Dinv33181' => 'din', 'Dinv35585' => 'din', 'Dinv37161' => 'din', 'Dinv42977' => 'din', 'Dinv43122' => 'din', 'Dinv44517' => 'din', 'Duzib093G0256' => 'dzi', 'Duzib106G1254' => 'dzi', 'Duzib128G1789' => 'dzi', 'Duzib133G0633' => 'dzi', 'Duzib138G0510' => 'dzi', 'Duzib150G1084' => 'dzi', 'Duzib168G0488' => 'dzi', 'Duzib168G1523' => 'dzi', 'Duzib170G0133' => 'dzi', 'ECA234G1433' => 'eca', 'ECA236G1432' => 'eca', 'ECA236G2256' => 'eca', 'ECA236G2365' => 'eca', 'ECA236G4830' => 'eca', 'ECA248G1505' => 'eca', 'EL10Ac3g06431' => 'bvu', 'EL10Ac5g12577' => 'bvu', 'EL10Ac6g13533' => 'bvu', 'EL10Ac7g16045' => 'bvu', 'Eucgr.A01281' => 'egr', 'Eucgr.B02326' => 'egr', 'Eucgr.H03532' => 'egr', 'Eucgr.K00553' => 'egr', 'Eucgr.K03116' => 'egr', 'FAN02G3963' => 'fan', 'FAN05G0438' => 'fan', 'FAN09G2434' => 'fan', 'FAN12G3984' => 'fan', 'FAN14G0798' => 'fan', 'FAN17G0652' => 'fan', 'FAN19G1988' => 'fan', 'FAN22G0632' => 'fan', 'FAN23G0387' => 'fan', 'FAN26G1323' => 'fan', 'FAN28G0666' => 'fan', 'FvH4_1g26080' => 'fve', 'FvH4_3g36780' => 'fve', 'FvH4_4g15270' => 'fve', 'FvH4_6g13490' => 'fve', 'Glyma.01G098700' => 'gma', 'Glyma.03G065900' => 'gma', 'Glyma.03G073754' => 'gma', 'Glyma.03G073758' => 'gma', 'Glyma.03G083200' => 'gma', 'Glyma.03G225500' => 'gma', 'Glyma.05G037766' => 'gma', 'Glyma.07G133500' => 'gma', 'Glyma.10G139400' => 'gma', 'Glyma.10G248900' => 'gma', 'Glyma.11G137800' => 'gma', 'Glyma.12G061300' => 'gma', 'Glyma.13G337900' => 'gma', 'Glyma.15G036600' => 'gma', 'Glyma.18G182800' => 'gma', 'Glyma.19G222500' => 'gma', 'Glyma.20G144800' => 'gma', 'Gohir.A01G222000' => 'ghi', 'Gohir.A03G044000' => 'ghi', 'Gohir.A03G044100' => 'ghi', 'Gohir.A04G083100' => 'ghi', 'Gohir.A07G127200' => 'ghi', 'Gohir.A07G132400' => 'ghi', 'Gohir.A08G000700' => 'ghi', 'Gohir.A11G327300' => 'ghi', 'Gohir.D01G211500' => 'ghi', 'Gohir.D03G123400' => 'ghi', 'Gohir.D03G123500' => 'ghi', 'Gohir.D04G121800' => 'ghi', 'Gohir.D07G131500' => 'ghi', 'Gohir.D07G136600' => 'ghi', 'Gohir.D08G011600' => 'ghi', 'Gohir.D11G346200' => 'ghi', 'Gorai.001G142800' => 'gra', 'Gorai.001G148700' => 'gra', 'Gorai.002G257300' => 'gra', 'Gorai.003G130000' => 'gra', 'Gorai.003G130100' => 'gra', 'Gorai.004G005300' => 'gra', 'Gorai.007G376500' => 'gra', 'Gorai.012G104700' => 'gra', 'GSVIVG01017946001' => 'vvi', 'GSVIVG01024928001' => 'vvi', 'GSVIVG01028227001' => 'vvi', 'GSVIVG01034151001' => 'vvi', 'HanXRQChr05g0135031' => 'han', 'HanXRQChr05g0135041' => 'han', 'HanXRQChr05g0140021' => 'han', 'HanXRQChr06g0178981' => 'han', 'HanXRQChr07g0188251' => 'han', 'HanXRQChr08g0235311' => 'han', 'HanXRQChr09g0271011' => 'han', 'HanXRQChr10g0293321' => 'han', 'HanXRQChr13g0388171' => 'han', 'Haze_00916' => 'cav', 'Haze_05063' => 'cav', 'Haze_20814' => 'cav', 'Haze_24128' => 'cav', 'Hma1.2p1_0745F.1_g212010' => 'hma', 'Hma1.2p1_0757F.1_g213260' => 'hma', 'Hma1.2p1_0936F.1_g238840' => 'hma', 'Hma1.2p1_1735F.1_g299890' => 'hma', 'Hma1.2p1_1861F.1_g305685' => 'hma', 'HPP92_003397' => 'vpl', 'HPP92_012597' => 'vpl', 'HPP92_015520' => 'vpl', 'HPP92_015539' => 'vpl', 'HPP92_020373' => 'vpl', 'Hund04938' => 'sun', 'Hund10677' => 'sun', 'Hund11033' => 'sun', 'Hund12155' => 'sun', 'Lalb_Chr01g0022551' => 'lal', 'Lalb_Chr03g0042341' => 'lal', 'Lalb_Chr07g0192931' => 'lal', 'Lalb_Chr12g0209551' => 'lal', 'Lalb_Chr19g0125251' => 'lal', 'Lalb_Chr19g0137891' => 'lal', 'Lalb_Chr21g0304641' => 'lal', 'Lalb_Chr21g0309881' => 'lal', 'Lj1A5T12' => 'lonja', 'Lj1C148G10' => 'lonja', 'Lj2A93T83' => 'lonja', 'Lj3A738G68' => 'lonja', 'Lj3C966T1' => 'lonja', 'Lj3g0018958' => 'lja', 'Lj3g0021831' => 'lja', 'Lj3g0025443' => 'lja', 'Lj4g0026809' => 'lja', 'Lj5g0012558' => 'lja', 'Lj5g0021586' => 'lja', 'Lsat_1_v5_gn_5_156840' => 'lsa', 'Lsat_1_v5_gn_8_73460' => 'lsa', 'Lsat_1_v5_gn_8_73481' => 'lsa', 'Lsat_1_v5_gn_9_31601' => 'lsa', 'Lsat_1_v5_gn_9_77320' => 'lsa', 'Manes.01G171300' => 'mes', 'Manes.01G171400' => 'mes', 'Manes.01G236100' => 'mes', 'Manes.02G130500' => 'mes', 'Manes.02G130600' => 'mes', 'Manes.03G180200' => 'mes', 'Manes.05G007000' => 'mes', 'Manes.08G084400' => 'mes', 'Manes.09G092600' => 'mes', 'Manes.15G027900' => 'mes', 'MBI04_g40948_MAGBIO' => 'mbi', 'MBI14_g12123_MAGBIO' => 'mbi', 'MBI18_g28915_MAGBIO' => 'mbi', 'MCO09G053' => 'mco', 'MCO11G782' => 'mco', 'MCO15G215' => 'mco', 'MD03G1088500' => 'mdo', 'MD03G1088600' => 'mdo', 'MD04G1130800' => 'mdo', 'MD09G1291700' => 'mdo', 'MD11G1097500' => 'mdo', 'MD11G1097600' => 'mdo', 'MD12G1143900' => 'mdo', 'MD13G1191400' => 'mdo', 'MD16G1191500' => 'mdo', 'Medtr1g085570' => 'mtr', 'Medtr1g104610' => 'mtr', 'Medtr2g097520' => 'mtr', 'Medtr4g021800' => 'mtr', 'Medtr4g021825' => 'mtr', 'Medtr4g064270' => 'mtr', 'Medtr4g064380' => 'mtr', 'Medtr7g062150' => 'mtr', 'MELO3C003138.2' => 'cme', 'MELO3C005187.2' => 'cme', 'MELO3C009252.2' => 'cme', 'MELO3C014481.2' => 'cme', 'MELO3C020616.2' => 'cme', 'MELO3C020617.2' => 'cme', 'MELO3C020618.2' => 'cme', 'Migut.G00328' => 'egut', 'Migut.J00320' => 'egut', 'Migut.L01000' => 'egut', 'Migut.L01953' => 'egut', 'MSTRG.10253' => 'ama', 'MSTRG.19077' => 'ama', 'MSTRG.26780' => 'ama', 'MSTRG.4023' => 'ama', 'MSTRG.5655' => 'ama', 'MSTRG.9992' => 'ama', 'Nitab4.5_0000043g0310' => 'nta', 'Nitab4.5_0000463g0080' => 'nta', 'Nitab4.5_0000705g0170' => 'nta', 'Nitab4.5_0001326g0060' => 'nta', 'Nitab4.5_0001628g0030' => 'nta', 'Nitab4.5_0002103g0110' => 'nta', 'Nitab4.5_0002946g0030' => 'nta', 'Nitab4.5_0004639g0030' => 'nta', 'Nn2g11149' => 'nnu', 'Nn2g13389' => 'nnu', 'Nn4g25326' => 'nnu', 'Nn4g26290' => 'nnu', 'Nn5g29865' => 'nnu', 'Oeu004163.1' => 'oeu', 'Oeu006901.1' => 'oeu', 'Oeu010096.1' => 'oeu', 'Oeu024340.1' => 'oeu', 'Oeu048369.1' => 'oeu', 'Os01g0973000' => 'osa', 'Os03g0273800' => 'osa', 'Os03g0701200' => 'osa', 'Os03g0834050' => 'osa', 'Os07g0634400' => 'osa', 'Peaxi162Scf00092g01414' => 'pax', 'Peaxi162Scf00165g00818' => 'pax', 'Peaxi162Scf00309g00516' => 'pax', 'Peaxi162Scf00774g00218' => 'pax', 'PGR004G1824' => 'pgr', 'PGR004G2606' => 'pgr', 'PGR031G2716' => 'pgr', 'PGR102G2460' => 'pgr', 'PGR142G2599' => 'pgr', 'PGSC0003DMG400000843' => 'stu', 'PGSC0003DMG400008829' => 'stu', 'PGSC0003DMG400030418' => 'stu', 'PGSC0003DMG400031834' => 'stu', 'PGSC0003DMG401028300' => 'stu', 'PGSC0003DMG402028300' => 'stu', 'Phvul.001G219300' => 'pvu', 'Phvul.007G056000' => 'pvu', 'Phvul.007G208000' => 'pvu', 'Phvul.008G119500' => 'pvu', 'Phvul.010G011200' => 'pvu', 'Phvul.010G014800' => 'pvu', 'Phvul.011G062900' => 'pvu', 'Phvul.L007043' => 'pvu', 'Potri.001G242300' => 'ptr', 'Potri.002G185300' => 'ptr', 'Potri.006G086900' => 'ptr', 'Potri.008G151700' => 'ptr', 'Potri.009G033500' => 'ptr', 'Potri.010G089300' => 'ptr', 'Potri.014G110800' => 'ptr', 'Pp3c27_8130' => 'ppa', 'Pp3c6_27410' => 'ppa', 'PRCOL_00001659' => 'pco', 'PRCOL_00001927' => 'pco', 'PRCOL_00003649' => 'pco', 'Prupe.1G011600' => 'ppe', 'Prupe.3G000800' => 'ppe', 'Prupe.3G001100' => 'ppe', 'Prupe.6G072700' => 'ppe', 'Prupe.6G072800' => 'ppe', 'Prupe.6G257300' => 'ppe', 'Prupe.8G033000' => 'ppe', 'Psat0s2633g0080' => 'psa', 'Psat0s3396g0080' => 'psa', 'Psat0s3396g0200' => 'psa', 'Psat3g139080' => 'psa', 'Psat5g285080' => 'psa', 'Psat6g157760' => 'psa', 'Psat6g208440' => 'psa', 'Psat7g215320' => 'psa', 'Psat7g215400' => 'psa', 'Psat7g235600' => 'psa', 'Psat7g235760' => 'psa', 'PSO063G4603' => 'pso', 'PSO210G0182' => 'pso', 'PSO210G0196' => 'pso', 'PSO339G0394' => 'pso', 'PSO339G4127' => 'pso', 'PSO513G0064' => 'pso', 'PSO761G0079' => 'pso', 'QL01p031003' => 'qlo', 'QL01p031078' => 'qlo', 'QL06p003004' => 'qlo', 'QL07p048731' => 'qlo', 'QL09p037427' => 'qlo', 'RcHm_v2.0_Chr3g0466361' => 'rch', 'RcHm_v2.0_Chr3g0485571' => 'rch', 'RcHm_v2.0_Chr4g0416551' => 'rch', 'RcHm_v2.0_Chr5g0065831' => 'rch', 'Rhsim01G0230500' => 'rsi', 'Rhsim05G0194000' => 'rsi', 'Rhsim08G0250400' => 'rsi', 'Sabra02G0131000' => 'sbr', 'Sabra06G0066300' => 'sbr', 'Sabra08G0115500' => 'sbr', 'Sabra09G0023900' => 'sbr', 'Sabra10G0054000' => 'sbr', 'Sabra14G0081500' => 'sbr', 'Sabra16G0147100' => 'sbr', 'SalBow2G2957' => 'sbo', 'SalBow4G3320' => 'sbo', 'SalBow8G1894' => 'sbo', 'Sc07g0007950' => 'sci', 'Sc12g0001360' => 'sci', 'Sc13g0004330' => 'sci', 'Sc20g0005010' => 'sci', 'Sed0000361' => 'sed', 'Sed0001706' => 'sed', 'Sed0002422' => 'sed', 'Sed0004029' => 'sed', 'Sed0004602' => 'sed', 'Sed0004943' => 'sed', 'Sed0008646' => 'sed', 'Sed0023313' => 'sed', 'Sed0024843' => 'sed', 'SEGI_00081' => 'sgi', 'SEGI_00947' => 'sgi', 'SEGI_04046' => 'sgi', 'SEGI_06880' => 'sgi', 'SEGI_09736' => 'sgi', 'SEGI_12741' => 'sgi', 'SEGI_14530' => 'sgi', 'SEGI_20705' => 'sgi', 'SEGI_26088' => 'sgi', 'SEGI_28323' => 'sgi', 'SEGI_33343' => 'sgi', 'SGA_v2.0_scaffold126G33775' => 'sas', 'SGA_v2.0_scaffold2G01337' => 'sas', 'SGA_v2.0_scaffold38G15006' => 'sas', 'SGA_v2.0_scaffold39G15264' => 'sas', 'SGA_v2.0_scaffold453G51880' => 'sas', 'SHI12696' => 'shi', 'SMO367G1096' => 'smo', 'Solyc01g068630.3' => 'sly', 'Solyc05g011880.3' => 'sly', 'Solyc06g076300.3' => 'sly', 'Solyc09g010940.4' => 'sly', 'Solyc09g075890.3' => 'sly', 'Sopen01g030560' => 'spe', 'Sopen05g006630' => 'spe', 'Sopen06g032720' => 'spe', 'Sopen09g005660' => 'spe', 'Sopen09g030690' => 'spe', 'Sp4g14540' => 'spa', 'Sp4g20030' => 'spa', 'Sp5g01320' => 'spa', 'Sp6g21170' => 'spa', 'Sp6g21180' => 'spa', 'Sp6g21190' => 'spa', 'Sp6g40220' => 'spa', 'TAR362G0122' => 'tar', 'TAR362G1338' => 'tar', 'TAR369G0590' => 'tar', 'TAR371G0824' => 'tar', 'TAR622G1429' => 'tar', 'TAR623G0734' => 'tar', 'TAR625G0441' => 'tar', 'TAR629G0976' => 'tar', 'TAR633G1195' => 'tar', 'TAR636G2660' => 'tar', 'THA.LOC104799440' => 'tha', 'THA.LOC104800966' => 'tha', 'THA.LOC104806559' => 'tha', 'THA.LOC104810765' => 'tha', 'THA.LOC104816266' => 'tha', 'THA.LOC104817419' => 'tha', 'THA.LOC104827021' => 'tha', 'Thecc.01G327400' => 'tca', 'Thecc.04G229200' => 'tca', 'Thecc.05G037400' => 'tca', 'Thecc.09G318600' => 'tca', 'Thecc.09G318700' => 'tca', 'Thhalv10006238m.g' => 'esa', 'Thhalv10014321m.g' => 'esa', 'Thhalv10014335m.g' => 'esa', 'Thhalv10015826m.g' => 'esa', 'Thhalv10017107m.g' => 'esa', 'Thhalv10017180m.g' => 'esa', 'Thhalv10029339m.g' => 'esa', 'TPR.G1699' => 'tpr', 'TPR.G23609' => 'tpr', 'TPR.G3081' => 'tpr', 'TPR.G40397' => 'tpr', 'TPR.G5522' => 'tpr', 'TPR.G5618' => 'tpr', 'TPR.G5626' => 'tpr', 'TWI09G1632' => 'twi', 'TWI23G1230' => 'twi', 'TWI53G1064' => 'twi', 'TWI59G0751' => 'twi', 'TWI74G0947' => 'twi', 'TWI77G0337' => 'twi', 'TWI79G1254' => 'twi', 'unitig_0.g2341' => 'ugi', 'unitig_26.g10006' => 'ugi', 'unitig_26.g10008' => 'ugi', 'unitig_26.g9192' => 'ugi', 'vmacro14547' => 'vma', 'vmacro15333' => 'vma', 'vmacro18743' => 'vma', 'vmacro20166' => 'vma', 'VMungo0331G0523' => 'vmu', 'VMungo0331G1202' => 'vmu', 'VMungo0720G1228' => 'vmu', 'VMungo0720G1514' => 'vmu', 'VMungo1080G0169' => 'vmu', 'VMungo1127G1475' => 'vmu', 'VMungo1383G1208' => 'vmu', 'VMungo1383G1698' => 'vmu', 'Zm00001eb012270' => 'zma', 'Zm00001eb054100' => 'zma', 'Zm00001eb063350' => 'zma', 'Zm00001eb328560' => 'zma', 'Zm00001eb342820' => 'zma', 'Zm00001eb362210' => 'zma', 'Zm00001eb397730' => 'zma', 'Zm00001eb399750' => 'zma' ) $gf_id = 'HOM05D000959' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000959' ) $data_identifier = 'HOM05D000959' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 5, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 5, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 10, 'mbi' => (int) 3, 'mco' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 2, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 3, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 11, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399750' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000959', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '622', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p07100' => 'bna', 'A03p11720' => 'bna', 'A05p08300' => 'bna', 'A05p13380' => 'bna', 'A09p54130' => 'bna', 'A10p16690' => 'bna', 'A10p16700' => 'bna', 'A10p33390' => 'bna', 'Aa31LG10G16020' => 'aar', 'Aa31LG1G11810' => 'aar', 'Aa31LG1G11830' => 'aar', 'Aa31LG1G22510' => 'aar', 'Aa31LG5G4890' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5793' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2310' => 'aag', 'Actinidia08499' => 'ach', 'Actinidia11262' => 'ach', 'Actinidia23926' => 'ach', 'Actinidia34420' => 'ach', 'Actinidia36970' => 'ach', 'Ah.02g111220' => 'amhyb', 'Ah.15g097750' => 'amhyb', 'AL4G27500' => 'aly', 'AL6G11470' => 'aly', 'AL8G35950' => 'aly', 'AL8G35960' => 'aly', 'AL8G35970' => 'aly', 'Aqoxy1G00912' => 'aox', 'Aqoxy2G02253' => 'aox', 'Aqoxy2G02411' => 'aox', 'Aqoxy5G00485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BZ66YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K8ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM4FUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6BF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HFV7XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25JBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0YNNV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MAKK6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P70IT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP2Z6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V61LZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YWP64R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3S9AI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7PGHH' => 'arhy', 'AT2G32150' => 'ath', 'AT3G62040' => 'ath', 'AT5G02230' => 'ath', 'AT5G59480' => 'ath', 'AT5G59490' => 'ath', 'ATR0332G060' => 'atr', 'ATR0559G190' => 'atr', 'ATR0693G294' => 'atr', 'Atru.chr3.3975' => 'acertr', 'Atru.chr3.3976' => 'acertr', 'Atru.chr3.3977' => 'acertr', 'Atru.chr4.2498' => 'acertr', 'Atru.chr5.838' => 'acertr', 'Atru.chr8.1990' => 'acertr', 'Atru.chr8.1991' => 'acertr', 'Atru.chr8.1992' => 'acertr', 'AUR62001759' => 'cqu', 'AUR62009545' => 'cqu', 'AUR62010474' => 'cqu', 'AUR62025820' => 'cqu', 'AUR62030422' => 'cqu', 'AUR62033605' => 'cqu', 'AUR62038615' => 'cqu', 'AUR62041347' => 'cqu', 'BcaB01g04574' => 'bca', 'BcaB02g09263' => 'bca', 'BcaB02g10453' => 'bca', 'BcaB05g22513' => 'bca', 'BcaB08g36253' => 'bca', 'BcaB08g36254' => 'bca', 'BcaC01g06519' => 'bca', 'BcaC02g11889' => 'bca', 'BcaC03g14010' => 'bca', 'BcaC03g18439' => 'bca', 'BcaC04g19765' => 'bca', 'BcaC09g48432' => 'bca', 'BcaNung07302' => 'bca', 'BolC2t06040H' => 'bol', 'BolC2t07346H' => 'bol', 'BolC3t13817H' => 'bol', 'BolC4t22625H' => 'bol', 'BolC4t23297H' => 'bol', 'BolC8t51278H' => 'bol', 'BolC9t58050H' => 'bol', 'BolC9t58051H' => 'bol', 'BolC9t60163H' => 'bol', 'BraA02t04712Z' => 'bra', 'BraA02t05791Z' => 'bra', 'BraA03t10483Z' => 'bra', 'BraA05t19795Z' => 'bra', 'BraA05t20276Z' => 'bra', 'BraA09t40827Z' => 'bra', 'BraA10t43750Z' => 'bra', 'BraA10t43751Z' => 'bra', 'BraA10t45370Z' => 'bra', 'C02p00400' => 'bna', 'C02p12460' => 'bna', 'C03p13680' => 'bna', 'C04p10270' => 'bna', 'C04p17500' => 'bna', 'C08p37010' => 'bna', 'C09p51880' => 'bna', 'C09p51890' => 'bna', 'C09p74300' => 'bna', 'CAN.G179.26' => 'can', 'CAN.G3384.1' => 'can', 'CAN.G394.68' => 'can', 'CAN.G907.13' => 'can', 'CANSAT11G0012' => 'cansat', 'CANSAT25G1586' => 'cansat', 'CANSAT35G0735' => 'cansat', 'CANSAT54G0556' => 'cansat', 'CANSAT64G0356' => 'cansat', 'CANSAT78G2042' => 'cansat', 'CARHR125920' => 'chi', 'CARHR131910' => 'chi', 'CARHR172390' => 'chi', 'CARHR211140' => 'chi', 'CARHR285850' => 'chi', 'CARHR285860' => 'chi', 'Carub.0004s1347' => 'cru', 'Carub.0004s1960' => 'cru', 'Carub.0005s2880' => 'cru', 'Carub.0006s0107' => 'cru', 'Carub.0008s2015' => 'cru', 'Carub.0008s2016' => 'cru', 'Carub.0008s2017' => 'cru', 'Ca_01315_v3' => 'car', 'Ca_05063_v3' => 'car', 'Ca_10231_v3' => 'car', 'Ca_10913_v3' => 'car', 'Ca_19156_v3' => 'car', 'Ca_23644_v3' => 'car', 'Ca_26735_v3' => 'car', 'Cc01_g13130' => 'ccan', 'Cc02_g21690' => 'ccan', 'Cc03_g03600' => 'ccan', 'Cc06_g02510' => 'ccan', 'CDE02G1265' => 'cde', 'CDE05G0415' => 'cde', 'CDE08G1082' => 'cde', 'Cfa005780' => 'cfa', 'Cfa011522' => 'cfa', 'Cfa011523' => 'cfa', 'Cfa015627' => 'cfa', 'Cfa017359' => 'cfa', 'Ciclev10005687m.g' => 'ccl', 'Ciclev10012173m.g' => 'ccl', 'Ciclev10021621m.g' => 'ccl', 'Ciclev10028968m.g' => 'ccl', 'Ciclev10029907m.g' => 'ccl', 'CiPaw.01G164800' => 'cil', 'CiPaw.07G083700' => 'cil', 'CiPaw.07G127000' => 'cil', 'CiPaw.07G136900' => 'cil', 'CiPaw.08G081700' => 'cil', 'CiPaw.09G194600' => 'cil', 'CiPaw.10G146500' => 'cil', 'CiPaw.13G091500' => 'cil', 'CiPaw.13G091600' => 'cil', 'ClCG00G003390' => 'cla', 'ClCG01G007220' => 'cla', 'ClCG03G001370' => 'cla', 'ClCG04G008100' => 'cla', 'ClCG06G006110' => 'cla', 'ClCG06G006130' => 'cla', 'ClCG10G021210' => 'cla', 'COL.COLO4_07648' => 'col', 'COL.COLO4_07650' => 'col', 'COL.COLO4_07651' => 'col', 'COL.COLO4_14780' => 'col', 'COL.COLO4_18546' => 'col', 'COL.COLO4_18547' => 'col', 'COL.COLO4_23103' => 'col', 'COL.COLO4_30419' => 'col', 'COL.COLO4_34232' => 'col', 'Cpa.g.sc169.20' => 'cpa', 'Cpa.g.sc57.45' => 'cpa', 'Cpa.g.sc58.124' => 'cpa', 'Cpa.g.sc58.125' => 'cpa', 'Cpa.g.sc81.118' => 'cpa', 'Cpa.g.sc81.119' => 'cpa', 'Cre12.g524700' => 'cre', 'CsaV3_1G034430' => 'csa', 'CsaV3_1G034440' => 'csa', 'CsaV3_1G034450' => 'csa', 'CsaV3_3G034830' => 'csa', 'CsaV3_4G025090' => 'csa', 'CsaV3_5G018660' => 'csa', 'CsaV3_6G038160' => 'csa', 'CSS0003447' => 'camsi', 'CSS0017840' => 'camsi', 'CSS0019260' => 'camsi', 'CSS0040375' => 'camsi', 'CSS0042533' => 'camsi', 'DCAR_005960' => 'dca', 'DCAR_012104' => 'dca', 'DCAR_012105' => 'dca', 'DCAR_012293' => 'dca', 'DCAR_015632' => 'dca', 'DCAR_024602' => 'dca', 'DCAR_028752' => 'dca', 'Dinv06261' => 'din', 'Dinv13982' => 'din', 'Dinv17029' => 'din', 'Dinv18463' => 'din', 'Dinv33181' => 'din', 'Dinv35585' => 'din', 'Dinv37161' => 'din', 'Dinv42977' => 'din', 'Dinv43122' => 'din', 'Dinv44517' => 'din', 'Duzib093G0256' => 'dzi', 'Duzib106G1254' => 'dzi', 'Duzib128G1789' => 'dzi', 'Duzib133G0633' => 'dzi', 'Duzib138G0510' => 'dzi', 'Duzib150G1084' => 'dzi', 'Duzib168G0488' => 'dzi', 'Duzib168G1523' => 'dzi', 'Duzib170G0133' => 'dzi', 'ECA234G1433' => 'eca', 'ECA236G1432' => 'eca', 'ECA236G2256' => 'eca', 'ECA236G2365' => 'eca', 'ECA236G4830' => 'eca', 'ECA248G1505' => 'eca', 'EL10Ac3g06431' => 'bvu', 'EL10Ac5g12577' => 'bvu', 'EL10Ac6g13533' => 'bvu', 'EL10Ac7g16045' => 'bvu', 'Eucgr.A01281' => 'egr', 'Eucgr.B02326' => 'egr', 'Eucgr.H03532' => 'egr', 'Eucgr.K00553' => 'egr', 'Eucgr.K03116' => 'egr', 'FAN02G3963' => 'fan', 'FAN05G0438' => 'fan', 'FAN09G2434' => 'fan', 'FAN12G3984' => 'fan', 'FAN14G0798' => 'fan', 'FAN17G0652' => 'fan', 'FAN19G1988' => 'fan', 'FAN22G0632' => 'fan', 'FAN23G0387' => 'fan', 'FAN26G1323' => 'fan', 'FAN28G0666' => 'fan', 'FvH4_1g26080' => 'fve', 'FvH4_3g36780' => 'fve', 'FvH4_4g15270' => 'fve', 'FvH4_6g13490' => 'fve', 'Glyma.01G098700' => 'gma', 'Glyma.03G065900' => 'gma', 'Glyma.03G073754' => 'gma', 'Glyma.03G073758' => 'gma', 'Glyma.03G083200' => 'gma', 'Glyma.03G225500' => 'gma', 'Glyma.05G037766' => 'gma', 'Glyma.07G133500' => 'gma', 'Glyma.10G139400' => 'gma', 'Glyma.10G248900' => 'gma', 'Glyma.11G137800' => 'gma', 'Glyma.12G061300' => 'gma', 'Glyma.13G337900' => 'gma', 'Glyma.15G036600' => 'gma', 'Glyma.18G182800' => 'gma', 'Glyma.19G222500' => 'gma', 'Glyma.20G144800' => 'gma', 'Gohir.A01G222000' => 'ghi', 'Gohir.A03G044000' => 'ghi', 'Gohir.A03G044100' => 'ghi', 'Gohir.A04G083100' => 'ghi', 'Gohir.A07G127200' => 'ghi', 'Gohir.A07G132400' => 'ghi', 'Gohir.A08G000700' => 'ghi', 'Gohir.A11G327300' => 'ghi', 'Gohir.D01G211500' => 'ghi', 'Gohir.D03G123400' => 'ghi', 'Gohir.D03G123500' => 'ghi', 'Gohir.D04G121800' => 'ghi', 'Gohir.D07G131500' => 'ghi', 'Gohir.D07G136600' => 'ghi', 'Gohir.D08G011600' => 'ghi', 'Gohir.D11G346200' => 'ghi', 'Gorai.001G142800' => 'gra', 'Gorai.001G148700' => 'gra', 'Gorai.002G257300' => 'gra', 'Gorai.003G130000' => 'gra', 'Gorai.003G130100' => 'gra', 'Gorai.004G005300' => 'gra', 'Gorai.007G376500' => 'gra', 'Gorai.012G104700' => 'gra', 'GSVIVG01017946001' => 'vvi', 'GSVIVG01024928001' => 'vvi', 'GSVIVG01028227001' => 'vvi', 'GSVIVG01034151001' => 'vvi', 'HanXRQChr05g0135031' => 'han', 'HanXRQChr05g0135041' => 'han', 'HanXRQChr05g0140021' => 'han', 'HanXRQChr06g0178981' => 'han', 'HanXRQChr07g0188251' => 'han', 'HanXRQChr08g0235311' => 'han', 'HanXRQChr09g0271011' => 'han', 'HanXRQChr10g0293321' => 'han', 'HanXRQChr13g0388171' => 'han', 'Haze_00916' => 'cav', 'Haze_05063' => 'cav', 'Haze_20814' => 'cav', 'Haze_24128' => 'cav', 'Hma1.2p1_0745F.1_g212010' => 'hma', 'Hma1.2p1_0757F.1_g213260' => 'hma', 'Hma1.2p1_0936F.1_g238840' => 'hma', 'Hma1.2p1_1735F.1_g299890' => 'hma', 'Hma1.2p1_1861F.1_g305685' => 'hma', 'HPP92_003397' => 'vpl', 'HPP92_012597' => 'vpl', 'HPP92_015520' => 'vpl', 'HPP92_015539' => 'vpl', 'HPP92_020373' => 'vpl', 'Hund04938' => 'sun', 'Hund10677' => 'sun', 'Hund11033' => 'sun', 'Hund12155' => 'sun', 'Lalb_Chr01g0022551' => 'lal', 'Lalb_Chr03g0042341' => 'lal', 'Lalb_Chr07g0192931' => 'lal', 'Lalb_Chr12g0209551' => 'lal', 'Lalb_Chr19g0125251' => 'lal', 'Lalb_Chr19g0137891' => 'lal', 'Lalb_Chr21g0304641' => 'lal', 'Lalb_Chr21g0309881' => 'lal', 'Lj1A5T12' => 'lonja', 'Lj1C148G10' => 'lonja', 'Lj2A93T83' => 'lonja', 'Lj3A738G68' => 'lonja', 'Lj3C966T1' => 'lonja', 'Lj3g0018958' => 'lja', 'Lj3g0021831' => 'lja', 'Lj3g0025443' => 'lja', 'Lj4g0026809' => 'lja', 'Lj5g0012558' => 'lja', 'Lj5g0021586' => 'lja', 'Lsat_1_v5_gn_5_156840' => 'lsa', 'Lsat_1_v5_gn_8_73460' => 'lsa', 'Lsat_1_v5_gn_8_73481' => 'lsa', 'Lsat_1_v5_gn_9_31601' => 'lsa', 'Lsat_1_v5_gn_9_77320' => 'lsa', 'Manes.01G171300' => 'mes', 'Manes.01G171400' => 'mes', 'Manes.01G236100' => 'mes', 'Manes.02G130500' => 'mes', 'Manes.02G130600' => 'mes', 'Manes.03G180200' => 'mes', 'Manes.05G007000' => 'mes', 'Manes.08G084400' => 'mes', 'Manes.09G092600' => 'mes', 'Manes.15G027900' => 'mes', 'MBI04_g40948_MAGBIO' => 'mbi', 'MBI14_g12123_MAGBIO' => 'mbi', 'MBI18_g28915_MAGBIO' => 'mbi', 'MCO09G053' => 'mco', 'MCO11G782' => 'mco', 'MCO15G215' => 'mco', 'MD03G1088500' => 'mdo', 'MD03G1088600' => 'mdo', 'MD04G1130800' => 'mdo', 'MD09G1291700' => 'mdo', 'MD11G1097500' => 'mdo', 'MD11G1097600' => 'mdo', 'MD12G1143900' => 'mdo', 'MD13G1191400' => 'mdo', 'MD16G1191500' => 'mdo', 'Medtr1g085570' => 'mtr', 'Medtr1g104610' => 'mtr', 'Medtr2g097520' => 'mtr', 'Medtr4g021800' => 'mtr', 'Medtr4g021825' => 'mtr', 'Medtr4g064270' => 'mtr', 'Medtr4g064380' => 'mtr', 'Medtr7g062150' => 'mtr', 'MELO3C003138.2' => 'cme', 'MELO3C005187.2' => 'cme', 'MELO3C009252.2' => 'cme', 'MELO3C014481.2' => 'cme', 'MELO3C020616.2' => 'cme', 'MELO3C020617.2' => 'cme', 'MELO3C020618.2' => 'cme', 'Migut.G00328' => 'egut', 'Migut.J00320' => 'egut', 'Migut.L01000' => 'egut', 'Migut.L01953' => 'egut', 'MSTRG.10253' => 'ama', 'MSTRG.19077' => 'ama', 'MSTRG.26780' => 'ama', 'MSTRG.4023' => 'ama', 'MSTRG.5655' => 'ama', 'MSTRG.9992' => 'ama', 'Nitab4.5_0000043g0310' => 'nta', 'Nitab4.5_0000463g0080' => 'nta', 'Nitab4.5_0000705g0170' => 'nta', 'Nitab4.5_0001326g0060' => 'nta', 'Nitab4.5_0001628g0030' => 'nta', 'Nitab4.5_0002103g0110' => 'nta', 'Nitab4.5_0002946g0030' => 'nta', 'Nitab4.5_0004639g0030' => 'nta', 'Nn2g11149' => 'nnu', 'Nn2g13389' => 'nnu', 'Nn4g25326' => 'nnu', 'Nn4g26290' => 'nnu', 'Nn5g29865' => 'nnu', 'Oeu004163.1' => 'oeu', 'Oeu006901.1' => 'oeu', 'Oeu010096.1' => 'oeu', 'Oeu024340.1' => 'oeu', 'Oeu048369.1' => 'oeu', 'Os01g0973000' => 'osa', 'Os03g0273800' => 'osa', 'Os03g0701200' => 'osa', 'Os03g0834050' => 'osa', 'Os07g0634400' => 'osa', 'Peaxi162Scf00092g01414' => 'pax', 'Peaxi162Scf00165g00818' => 'pax', 'Peaxi162Scf00309g00516' => 'pax', 'Peaxi162Scf00774g00218' => 'pax', 'PGR004G1824' => 'pgr', 'PGR004G2606' => 'pgr', 'PGR031G2716' => 'pgr', 'PGR102G2460' => 'pgr', 'PGR142G2599' => 'pgr', 'PGSC0003DMG400000843' => 'stu', 'PGSC0003DMG400008829' => 'stu', 'PGSC0003DMG400030418' => 'stu', 'PGSC0003DMG400031834' => 'stu', 'PGSC0003DMG401028300' => 'stu', 'PGSC0003DMG402028300' => 'stu', 'Phvul.001G219300' => 'pvu', 'Phvul.007G056000' => 'pvu', 'Phvul.007G208000' => 'pvu', 'Phvul.008G119500' => 'pvu', 'Phvul.010G011200' => 'pvu', 'Phvul.010G014800' => 'pvu', 'Phvul.011G062900' => 'pvu', 'Phvul.L007043' => 'pvu', 'Potri.001G242300' => 'ptr', 'Potri.002G185300' => 'ptr', 'Potri.006G086900' => 'ptr', 'Potri.008G151700' => 'ptr', 'Potri.009G033500' => 'ptr', 'Potri.010G089300' => 'ptr', 'Potri.014G110800' => 'ptr', 'Pp3c27_8130' => 'ppa', 'Pp3c6_27410' => 'ppa', 'PRCOL_00001659' => 'pco', 'PRCOL_00001927' => 'pco', 'PRCOL_00003649' => 'pco', 'Prupe.1G011600' => 'ppe', 'Prupe.3G000800' => 'ppe', 'Prupe.3G001100' => 'ppe', 'Prupe.6G072700' => 'ppe', 'Prupe.6G072800' => 'ppe', 'Prupe.6G257300' => 'ppe', 'Prupe.8G033000' => 'ppe', 'Psat0s2633g0080' => 'psa', 'Psat0s3396g0080' => 'psa', 'Psat0s3396g0200' => 'psa', 'Psat3g139080' => 'psa', 'Psat5g285080' => 'psa', 'Psat6g157760' => 'psa', 'Psat6g208440' => 'psa', 'Psat7g215320' => 'psa', 'Psat7g215400' => 'psa', 'Psat7g235600' => 'psa', 'Psat7g235760' => 'psa', 'PSO063G4603' => 'pso', 'PSO210G0182' => 'pso', 'PSO210G0196' => 'pso', 'PSO339G0394' => 'pso', 'PSO339G4127' => 'pso', 'PSO513G0064' => 'pso', 'PSO761G0079' => 'pso', 'QL01p031003' => 'qlo', 'QL01p031078' => 'qlo', 'QL06p003004' => 'qlo', 'QL07p048731' => 'qlo', 'QL09p037427' => 'qlo', 'RcHm_v2.0_Chr3g0466361' => 'rch', 'RcHm_v2.0_Chr3g0485571' => 'rch', 'RcHm_v2.0_Chr4g0416551' => 'rch', 'RcHm_v2.0_Chr5g0065831' => 'rch', 'Rhsim01G0230500' => 'rsi', 'Rhsim05G0194000' => 'rsi', 'Rhsim08G0250400' => 'rsi', 'Sabra02G0131000' => 'sbr', 'Sabra06G0066300' => 'sbr', 'Sabra08G0115500' => 'sbr', 'Sabra09G0023900' => 'sbr', 'Sabra10G0054000' => 'sbr', 'Sabra14G0081500' => 'sbr', 'Sabra16G0147100' => 'sbr', 'SalBow2G2957' => 'sbo', 'SalBow4G3320' => 'sbo', 'SalBow8G1894' => 'sbo', 'Sc07g0007950' => 'sci', 'Sc12g0001360' => 'sci', 'Sc13g0004330' => 'sci', 'Sc20g0005010' => 'sci', 'Sed0000361' => 'sed', 'Sed0001706' => 'sed', 'Sed0002422' => 'sed', 'Sed0004029' => 'sed', 'Sed0004602' => 'sed', 'Sed0004943' => 'sed', 'Sed0008646' => 'sed', 'Sed0023313' => 'sed', 'Sed0024843' => 'sed', 'SEGI_00081' => 'sgi', 'SEGI_00947' => 'sgi', 'SEGI_04046' => 'sgi', 'SEGI_06880' => 'sgi', 'SEGI_09736' => 'sgi', 'SEGI_12741' => 'sgi', 'SEGI_14530' => 'sgi', 'SEGI_20705' => 'sgi', 'SEGI_26088' => 'sgi', 'SEGI_28323' => 'sgi', 'SEGI_33343' => 'sgi', 'SGA_v2.0_scaffold126G33775' => 'sas', 'SGA_v2.0_scaffold2G01337' => 'sas', 'SGA_v2.0_scaffold38G15006' => 'sas', 'SGA_v2.0_scaffold39G15264' => 'sas', 'SGA_v2.0_scaffold453G51880' => 'sas', 'SHI12696' => 'shi', 'SMO367G1096' => 'smo', 'Solyc01g068630.3' => 'sly', 'Solyc05g011880.3' => 'sly', 'Solyc06g076300.3' => 'sly', 'Solyc09g010940.4' => 'sly', 'Solyc09g075890.3' => 'sly', 'Sopen01g030560' => 'spe', 'Sopen05g006630' => 'spe', 'Sopen06g032720' => 'spe', 'Sopen09g005660' => 'spe', 'Sopen09g030690' => 'spe', 'Sp4g14540' => 'spa', 'Sp4g20030' => 'spa', 'Sp5g01320' => 'spa', 'Sp6g21170' => 'spa', 'Sp6g21180' => 'spa', 'Sp6g21190' => 'spa', 'Sp6g40220' => 'spa', 'TAR362G0122' => 'tar', 'TAR362G1338' => 'tar', 'TAR369G0590' => 'tar', 'TAR371G0824' => 'tar', 'TAR622G1429' => 'tar', 'TAR623G0734' => 'tar', 'TAR625G0441' => 'tar', 'TAR629G0976' => 'tar', 'TAR633G1195' => 'tar', 'TAR636G2660' => 'tar', 'THA.LOC104799440' => 'tha', 'THA.LOC104800966' => 'tha', 'THA.LOC104806559' => 'tha', 'THA.LOC104810765' => 'tha', 'THA.LOC104816266' => 'tha', 'THA.LOC104817419' => 'tha', 'THA.LOC104827021' => 'tha', 'Thecc.01G327400' => 'tca', 'Thecc.04G229200' => 'tca', 'Thecc.05G037400' => 'tca', 'Thecc.09G318600' => 'tca', 'Thecc.09G318700' => 'tca', 'Thhalv10006238m.g' => 'esa', 'Thhalv10014321m.g' => 'esa', 'Thhalv10014335m.g' => 'esa', 'Thhalv10015826m.g' => 'esa', 'Thhalv10017107m.g' => 'esa', 'Thhalv10017180m.g' => 'esa', 'Thhalv10029339m.g' => 'esa', 'TPR.G1699' => 'tpr', 'TPR.G23609' => 'tpr', 'TPR.G3081' => 'tpr', 'TPR.G40397' => 'tpr', 'TPR.G5522' => 'tpr', 'TPR.G5618' => 'tpr', 'TPR.G5626' => 'tpr', 'TWI09G1632' => 'twi', 'TWI23G1230' => 'twi', 'TWI53G1064' => 'twi', 'TWI59G0751' => 'twi', 'TWI74G0947' => 'twi', 'TWI77G0337' => 'twi', 'TWI79G1254' => 'twi', 'unitig_0.g2341' => 'ugi', 'unitig_26.g10006' => 'ugi', 'unitig_26.g10008' => 'ugi', 'unitig_26.g9192' => 'ugi', 'vmacro14547' => 'vma', 'vmacro15333' => 'vma', 'vmacro18743' => 'vma', 'vmacro20166' => 'vma', 'VMungo0331G0523' => 'vmu', 'VMungo0331G1202' => 'vmu', 'VMungo0720G1228' => 'vmu', 'VMungo0720G1514' => 'vmu', 'VMungo1080G0169' => 'vmu', 'VMungo1127G1475' => 'vmu', 'VMungo1383G1208' => 'vmu', 'VMungo1383G1698' => 'vmu', 'Zm00001eb012270' => 'zma', 'Zm00001eb054100' => 'zma', 'Zm00001eb063350' => 'zma', 'Zm00001eb328560' => 'zma', 'Zm00001eb342820' => 'zma', 'Zm00001eb362210' => 'zma', 'Zm00001eb397730' => 'zma', 'Zm00001eb399750' => 'zma' ), 'gf_id' => 'HOM05D000959', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000959' ), 'data_identifier' => 'HOM05D000959', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000959', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '622', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p07100' => 'bna', 'A03p11720' => 'bna', 'A05p08300' => 'bna', 'A05p13380' => 'bna', 'A09p54130' => 'bna', 'A10p16690' => 'bna', 'A10p16700' => 'bna', 'A10p33390' => 'bna', 'Aa31LG10G16020' => 'aar', 'Aa31LG1G11810' => 'aar', 'Aa31LG1G11830' => 'aar', 'Aa31LG1G22510' => 'aar', 'Aa31LG5G4890' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5793' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2310' => 'aag', 'Actinidia08499' => 'ach', 'Actinidia11262' => 'ach', 'Actinidia23926' => 'ach', 'Actinidia34420' => 'ach', 'Actinidia36970' => 'ach', 'Ah.02g111220' => 'amhyb', 'Ah.15g097750' => 'amhyb', 'AL4G27500' => 'aly', 'AL6G11470' => 'aly', 'AL8G35950' => 'aly', 'AL8G35960' => 'aly', 'AL8G35970' => 'aly', 'Aqoxy1G00912' => 'aox', 'Aqoxy2G02253' => 'aox', 'Aqoxy2G02411' => 'aox', 'Aqoxy5G00485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BZ66YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K8ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM4FUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6BF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HFV7XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25JBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0YNNV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MAKK6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P70IT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP2Z6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V61LZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YWP64R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3S9AI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7PGHH' => 'arhy', 'AT2G32150' => 'ath', 'AT3G62040' => 'ath', 'AT5G02230' => 'ath', 'AT5G59480' => 'ath', 'AT5G59490' => 'ath', 'ATR0332G060' => 'atr', 'ATR0559G190' => 'atr', 'ATR0693G294' => 'atr', 'Atru.chr3.3975' => 'acertr', 'Atru.chr3.3976' => 'acertr', 'Atru.chr3.3977' => 'acertr', 'Atru.chr4.2498' => 'acertr', 'Atru.chr5.838' => 'acertr', 'Atru.chr8.1990' => 'acertr', 'Atru.chr8.1991' => 'acertr', 'Atru.chr8.1992' => 'acertr', 'AUR62001759' => 'cqu', 'AUR62009545' => 'cqu', 'AUR62010474' => 'cqu', 'AUR62025820' => 'cqu', 'AUR62030422' => 'cqu', 'AUR62033605' => 'cqu', 'AUR62038615' => 'cqu', 'AUR62041347' => 'cqu', 'BcaB01g04574' => 'bca', 'BcaB02g09263' => 'bca', 'BcaB02g10453' => 'bca', 'BcaB05g22513' => 'bca', 'BcaB08g36253' => 'bca', 'BcaB08g36254' => 'bca', 'BcaC01g06519' => 'bca', 'BcaC02g11889' => 'bca', 'BcaC03g14010' => 'bca', 'BcaC03g18439' => 'bca', 'BcaC04g19765' => 'bca', 'BcaC09g48432' => 'bca', 'BcaNung07302' => 'bca', 'BolC2t06040H' => 'bol', 'BolC2t07346H' => 'bol', 'BolC3t13817H' => 'bol', 'BolC4t22625H' => 'bol', 'BolC4t23297H' => 'bol', 'BolC8t51278H' => 'bol', 'BolC9t58050H' => 'bol', 'BolC9t58051H' => 'bol', 'BolC9t60163H' => 'bol', 'BraA02t04712Z' => 'bra', 'BraA02t05791Z' => 'bra', 'BraA03t10483Z' => 'bra', 'BraA05t19795Z' => 'bra', 'BraA05t20276Z' => 'bra', 'BraA09t40827Z' => 'bra', 'BraA10t43750Z' => 'bra', 'BraA10t43751Z' => 'bra', 'BraA10t45370Z' => 'bra', 'C02p00400' => 'bna', 'C02p12460' => 'bna', 'C03p13680' => 'bna', 'C04p10270' => 'bna', 'C04p17500' => 'bna', 'C08p37010' => 'bna', 'C09p51880' => 'bna', 'C09p51890' => 'bna', 'C09p74300' => 'bna', 'CAN.G179.26' => 'can', 'CAN.G3384.1' => 'can', 'CAN.G394.68' => 'can', 'CAN.G907.13' => 'can', 'CANSAT11G0012' => 'cansat', 'CANSAT25G1586' => 'cansat', 'CANSAT35G0735' => 'cansat', 'CANSAT54G0556' => 'cansat', 'CANSAT64G0356' => 'cansat', 'CANSAT78G2042' => 'cansat', 'CARHR125920' => 'chi', 'CARHR131910' => 'chi', 'CARHR172390' => 'chi', 'CARHR211140' => 'chi', 'CARHR285850' => 'chi', 'CARHR285860' => 'chi', 'Carub.0004s1347' => 'cru', 'Carub.0004s1960' => 'cru', 'Carub.0005s2880' => 'cru', 'Carub.0006s0107' => 'cru', 'Carub.0008s2015' => 'cru', 'Carub.0008s2016' => 'cru', 'Carub.0008s2017' => 'cru', 'Ca_01315_v3' => 'car', 'Ca_05063_v3' => 'car', 'Ca_10231_v3' => 'car', 'Ca_10913_v3' => 'car', 'Ca_19156_v3' => 'car', 'Ca_23644_v3' => 'car', 'Ca_26735_v3' => 'car', 'Cc01_g13130' => 'ccan', 'Cc02_g21690' => 'ccan', 'Cc03_g03600' => 'ccan', 'Cc06_g02510' => 'ccan', 'CDE02G1265' => 'cde', 'CDE05G0415' => 'cde', 'CDE08G1082' => 'cde', 'Cfa005780' => 'cfa', 'Cfa011522' => 'cfa', 'Cfa011523' => 'cfa', 'Cfa015627' => 'cfa', 'Cfa017359' => 'cfa', 'Ciclev10005687m.g' => 'ccl', 'Ciclev10012173m.g' => 'ccl', 'Ciclev10021621m.g' => 'ccl', 'Ciclev10028968m.g' => 'ccl', 'Ciclev10029907m.g' => 'ccl', 'CiPaw.01G164800' => 'cil', 'CiPaw.07G083700' => 'cil', 'CiPaw.07G127000' => 'cil', 'CiPaw.07G136900' => 'cil', 'CiPaw.08G081700' => 'cil', 'CiPaw.09G194600' => 'cil', 'CiPaw.10G146500' => 'cil', 'CiPaw.13G091500' => 'cil', 'CiPaw.13G091600' => 'cil', 'ClCG00G003390' => 'cla', 'ClCG01G007220' => 'cla', 'ClCG03G001370' => 'cla', 'ClCG04G008100' => 'cla', 'ClCG06G006110' => 'cla', 'ClCG06G006130' => 'cla', 'ClCG10G021210' => 'cla', 'COL.COLO4_07648' => 'col', 'COL.COLO4_07650' => 'col', 'COL.COLO4_07651' => 'col', 'COL.COLO4_14780' => 'col', 'COL.COLO4_18546' => 'col', 'COL.COLO4_18547' => 'col', 'COL.COLO4_23103' => 'col', 'COL.COLO4_30419' => 'col', 'COL.COLO4_34232' => 'col', 'Cpa.g.sc169.20' => 'cpa', 'Cpa.g.sc57.45' => 'cpa', 'Cpa.g.sc58.124' => 'cpa', 'Cpa.g.sc58.125' => 'cpa', 'Cpa.g.sc81.118' => 'cpa', 'Cpa.g.sc81.119' => 'cpa', 'Cre12.g524700' => 'cre', 'CsaV3_1G034430' => 'csa', 'CsaV3_1G034440' => 'csa', 'CsaV3_1G034450' => 'csa', 'CsaV3_3G034830' => 'csa', 'CsaV3_4G025090' => 'csa', 'CsaV3_5G018660' => 'csa', 'CsaV3_6G038160' => 'csa', 'CSS0003447' => 'camsi', 'CSS0017840' => 'camsi', 'CSS0019260' => 'camsi', 'CSS0040375' => 'camsi', 'CSS0042533' => 'camsi', 'DCAR_005960' => 'dca', 'DCAR_012104' => 'dca', 'DCAR_012105' => 'dca', 'DCAR_012293' => 'dca', 'DCAR_015632' => 'dca', 'DCAR_024602' => 'dca', 'DCAR_028752' => 'dca', 'Dinv06261' => 'din', 'Dinv13982' => 'din', 'Dinv17029' => 'din', 'Dinv18463' => 'din', 'Dinv33181' => 'din', 'Dinv35585' => 'din', 'Dinv37161' => 'din', 'Dinv42977' => 'din', 'Dinv43122' => 'din', 'Dinv44517' => 'din', 'Duzib093G0256' => 'dzi', 'Duzib106G1254' => 'dzi', 'Duzib128G1789' => 'dzi', 'Duzib133G0633' => 'dzi', 'Duzib138G0510' => 'dzi', 'Duzib150G1084' => 'dzi', 'Duzib168G0488' => 'dzi', 'Duzib168G1523' => 'dzi', 'Duzib170G0133' => 'dzi', 'ECA234G1433' => 'eca', 'ECA236G1432' => 'eca', 'ECA236G2256' => 'eca', 'ECA236G2365' => 'eca', 'ECA236G4830' => 'eca', 'ECA248G1505' => 'eca', 'EL10Ac3g06431' => 'bvu', 'EL10Ac5g12577' => 'bvu', 'EL10Ac6g13533' => 'bvu', 'EL10Ac7g16045' => 'bvu', 'Eucgr.A01281' => 'egr', 'Eucgr.B02326' => 'egr', 'Eucgr.H03532' => 'egr', 'Eucgr.K00553' => 'egr', 'Eucgr.K03116' => 'egr', 'FAN02G3963' => 'fan', 'FAN05G0438' => 'fan', 'FAN09G2434' => 'fan', 'FAN12G3984' => 'fan', 'FAN14G0798' => 'fan', 'FAN17G0652' => 'fan', 'FAN19G1988' => 'fan', 'FAN22G0632' => 'fan', 'FAN23G0387' => 'fan', 'FAN26G1323' => 'fan', 'FAN28G0666' => 'fan', 'FvH4_1g26080' => 'fve', 'FvH4_3g36780' => 'fve', 'FvH4_4g15270' => 'fve', 'FvH4_6g13490' => 'fve', 'Glyma.01G098700' => 'gma', 'Glyma.03G065900' => 'gma', 'Glyma.03G073754' => 'gma', 'Glyma.03G073758' => 'gma', 'Glyma.03G083200' => 'gma', 'Glyma.03G225500' => 'gma', 'Glyma.05G037766' => 'gma', 'Glyma.07G133500' => 'gma', 'Glyma.10G139400' => 'gma', 'Glyma.10G248900' => 'gma', 'Glyma.11G137800' => 'gma', 'Glyma.12G061300' => 'gma', 'Glyma.13G337900' => 'gma', 'Glyma.15G036600' => 'gma', 'Glyma.18G182800' => 'gma', 'Glyma.19G222500' => 'gma', 'Glyma.20G144800' => 'gma', 'Gohir.A01G222000' => 'ghi', 'Gohir.A03G044000' => 'ghi', 'Gohir.A03G044100' => 'ghi', 'Gohir.A04G083100' => 'ghi', 'Gohir.A07G127200' => 'ghi', 'Gohir.A07G132400' => 'ghi', 'Gohir.A08G000700' => 'ghi', 'Gohir.A11G327300' => 'ghi', 'Gohir.D01G211500' => 'ghi', 'Gohir.D03G123400' => 'ghi', 'Gohir.D03G123500' => 'ghi', 'Gohir.D04G121800' => 'ghi', 'Gohir.D07G131500' => 'ghi', 'Gohir.D07G136600' => 'ghi', 'Gohir.D08G011600' => 'ghi', 'Gohir.D11G346200' => 'ghi', 'Gorai.001G142800' => 'gra', 'Gorai.001G148700' => 'gra', 'Gorai.002G257300' => 'gra', 'Gorai.003G130000' => 'gra', 'Gorai.003G130100' => 'gra', 'Gorai.004G005300' => 'gra', 'Gorai.007G376500' => 'gra', 'Gorai.012G104700' => 'gra', 'GSVIVG01017946001' => 'vvi', 'GSVIVG01024928001' => 'vvi', 'GSVIVG01028227001' => 'vvi', 'GSVIVG01034151001' => 'vvi', 'HanXRQChr05g0135031' => 'han', 'HanXRQChr05g0135041' => 'han', 'HanXRQChr05g0140021' => 'han', 'HanXRQChr06g0178981' => 'han', 'HanXRQChr07g0188251' => 'han', 'HanXRQChr08g0235311' => 'han', 'HanXRQChr09g0271011' => 'han', 'HanXRQChr10g0293321' => 'han', 'HanXRQChr13g0388171' => 'han', 'Haze_00916' => 'cav', 'Haze_05063' => 'cav', 'Haze_20814' => 'cav', 'Haze_24128' => 'cav', 'Hma1.2p1_0745F.1_g212010' => 'hma', 'Hma1.2p1_0757F.1_g213260' => 'hma', 'Hma1.2p1_0936F.1_g238840' => 'hma', 'Hma1.2p1_1735F.1_g299890' => 'hma', 'Hma1.2p1_1861F.1_g305685' => 'hma', 'HPP92_003397' => 'vpl', 'HPP92_012597' => 'vpl', 'HPP92_015520' => 'vpl', 'HPP92_015539' => 'vpl', 'HPP92_020373' => 'vpl', 'Hund04938' => 'sun', 'Hund10677' => 'sun', 'Hund11033' => 'sun', 'Hund12155' => 'sun', 'Lalb_Chr01g0022551' => 'lal', 'Lalb_Chr03g0042341' => 'lal', 'Lalb_Chr07g0192931' => 'lal', 'Lalb_Chr12g0209551' => 'lal', 'Lalb_Chr19g0125251' => 'lal', 'Lalb_Chr19g0137891' => 'lal', 'Lalb_Chr21g0304641' => 'lal', 'Lalb_Chr21g0309881' => 'lal', 'Lj1A5T12' => 'lonja', 'Lj1C148G10' => 'lonja', 'Lj2A93T83' => 'lonja', 'Lj3A738G68' => 'lonja', 'Lj3C966T1' => 'lonja', 'Lj3g0018958' => 'lja', 'Lj3g0021831' => 'lja', 'Lj3g0025443' => 'lja', 'Lj4g0026809' => 'lja', 'Lj5g0012558' => 'lja', 'Lj5g0021586' => 'lja', 'Lsat_1_v5_gn_5_156840' => 'lsa', 'Lsat_1_v5_gn_8_73460' => 'lsa', 'Lsat_1_v5_gn_8_73481' => 'lsa', 'Lsat_1_v5_gn_9_31601' => 'lsa', 'Lsat_1_v5_gn_9_77320' => 'lsa', 'Manes.01G171300' => 'mes', 'Manes.01G171400' => 'mes', 'Manes.01G236100' => 'mes', 'Manes.02G130500' => 'mes', 'Manes.02G130600' => 'mes', 'Manes.03G180200' => 'mes', 'Manes.05G007000' => 'mes', 'Manes.08G084400' => 'mes', 'Manes.09G092600' => 'mes', 'Manes.15G027900' => 'mes', 'MBI04_g40948_MAGBIO' => 'mbi', 'MBI14_g12123_MAGBIO' => 'mbi', 'MBI18_g28915_MAGBIO' => 'mbi', 'MCO09G053' => 'mco', 'MCO11G782' => 'mco', 'MCO15G215' => 'mco', 'MD03G1088500' => 'mdo', 'MD03G1088600' => 'mdo', 'MD04G1130800' => 'mdo', 'MD09G1291700' => 'mdo', 'MD11G1097500' => 'mdo', 'MD11G1097600' => 'mdo', 'MD12G1143900' => 'mdo', 'MD13G1191400' => 'mdo', 'MD16G1191500' => 'mdo', 'Medtr1g085570' => 'mtr', 'Medtr1g104610' => 'mtr', 'Medtr2g097520' => 'mtr', 'Medtr4g021800' => 'mtr', 'Medtr4g021825' => 'mtr', 'Medtr4g064270' => 'mtr', 'Medtr4g064380' => 'mtr', 'Medtr7g062150' => 'mtr', 'MELO3C003138.2' => 'cme', 'MELO3C005187.2' => 'cme', 'MELO3C009252.2' => 'cme', 'MELO3C014481.2' => 'cme', 'MELO3C020616.2' => 'cme', 'MELO3C020617.2' => 'cme', 'MELO3C020618.2' => 'cme', 'Migut.G00328' => 'egut', 'Migut.J00320' => 'egut', 'Migut.L01000' => 'egut', 'Migut.L01953' => 'egut', 'MSTRG.10253' => 'ama', 'MSTRG.19077' => 'ama', 'MSTRG.26780' => 'ama', 'MSTRG.4023' => 'ama', 'MSTRG.5655' => 'ama', 'MSTRG.9992' => 'ama', 'Nitab4.5_0000043g0310' => 'nta', 'Nitab4.5_0000463g0080' => 'nta', 'Nitab4.5_0000705g0170' => 'nta', 'Nitab4.5_0001326g0060' => 'nta', 'Nitab4.5_0001628g0030' => 'nta', 'Nitab4.5_0002103g0110' => 'nta', 'Nitab4.5_0002946g0030' => 'nta', 'Nitab4.5_0004639g0030' => 'nta', 'Nn2g11149' => 'nnu', 'Nn2g13389' => 'nnu', 'Nn4g25326' => 'nnu', 'Nn4g26290' => 'nnu', 'Nn5g29865' => 'nnu', 'Oeu004163.1' => 'oeu', 'Oeu006901.1' => 'oeu', 'Oeu010096.1' => 'oeu', 'Oeu024340.1' => 'oeu', 'Oeu048369.1' => 'oeu', 'Os01g0973000' => 'osa', 'Os03g0273800' => 'osa', 'Os03g0701200' => 'osa', 'Os03g0834050' => 'osa', 'Os07g0634400' => 'osa', 'Peaxi162Scf00092g01414' => 'pax', 'Peaxi162Scf00165g00818' => 'pax', 'Peaxi162Scf00309g00516' => 'pax', 'Peaxi162Scf00774g00218' => 'pax', 'PGR004G1824' => 'pgr', 'PGR004G2606' => 'pgr', 'PGR031G2716' => 'pgr', 'PGR102G2460' => 'pgr', 'PGR142G2599' => 'pgr', 'PGSC0003DMG400000843' => 'stu', 'PGSC0003DMG400008829' => 'stu', 'PGSC0003DMG400030418' => 'stu', 'PGSC0003DMG400031834' => 'stu', 'PGSC0003DMG401028300' => 'stu', 'PGSC0003DMG402028300' => 'stu', 'Phvul.001G219300' => 'pvu', 'Phvul.007G056000' => 'pvu', 'Phvul.007G208000' => 'pvu', 'Phvul.008G119500' => 'pvu', 'Phvul.010G011200' => 'pvu', 'Phvul.010G014800' => 'pvu', 'Phvul.011G062900' => 'pvu', 'Phvul.L007043' => 'pvu', 'Potri.001G242300' => 'ptr', 'Potri.002G185300' => 'ptr', 'Potri.006G086900' => 'ptr', 'Potri.008G151700' => 'ptr', 'Potri.009G033500' => 'ptr', 'Potri.010G089300' => 'ptr', 'Potri.014G110800' => 'ptr', 'Pp3c27_8130' => 'ppa', 'Pp3c6_27410' => 'ppa', 'PRCOL_00001659' => 'pco', 'PRCOL_00001927' => 'pco', 'PRCOL_00003649' => 'pco', 'Prupe.1G011600' => 'ppe', 'Prupe.3G000800' => 'ppe', 'Prupe.3G001100' => 'ppe', 'Prupe.6G072700' => 'ppe', 'Prupe.6G072800' => 'ppe', 'Prupe.6G257300' => 'ppe', 'Prupe.8G033000' => 'ppe', 'Psat0s2633g0080' => 'psa', 'Psat0s3396g0080' => 'psa', 'Psat0s3396g0200' => 'psa', 'Psat3g139080' => 'psa', 'Psat5g285080' => 'psa', 'Psat6g157760' => 'psa', 'Psat6g208440' => 'psa', 'Psat7g215320' => 'psa', 'Psat7g215400' => 'psa', 'Psat7g235600' => 'psa', 'Psat7g235760' => 'psa', 'PSO063G4603' => 'pso', 'PSO210G0182' => 'pso', 'PSO210G0196' => 'pso', 'PSO339G0394' => 'pso', 'PSO339G4127' => 'pso', 'PSO513G0064' => 'pso', 'PSO761G0079' => 'pso', 'QL01p031003' => 'qlo', 'QL01p031078' => 'qlo', 'QL06p003004' => 'qlo', 'QL07p048731' => 'qlo', 'QL09p037427' => 'qlo', 'RcHm_v2.0_Chr3g0466361' => 'rch', 'RcHm_v2.0_Chr3g0485571' => 'rch', 'RcHm_v2.0_Chr4g0416551' => 'rch', 'RcHm_v2.0_Chr5g0065831' => 'rch', 'Rhsim01G0230500' => 'rsi', 'Rhsim05G0194000' => 'rsi', 'Rhsim08G0250400' => 'rsi', 'Sabra02G0131000' => 'sbr', 'Sabra06G0066300' => 'sbr', 'Sabra08G0115500' => 'sbr', 'Sabra09G0023900' => 'sbr', 'Sabra10G0054000' => 'sbr', 'Sabra14G0081500' => 'sbr', 'Sabra16G0147100' => 'sbr', 'SalBow2G2957' => 'sbo', 'SalBow4G3320' => 'sbo', 'SalBow8G1894' => 'sbo', 'Sc07g0007950' => 'sci', 'Sc12g0001360' => 'sci', 'Sc13g0004330' => 'sci', 'Sc20g0005010' => 'sci', 'Sed0000361' => 'sed', 'Sed0001706' => 'sed', 'Sed0002422' => 'sed', 'Sed0004029' => 'sed', 'Sed0004602' => 'sed', 'Sed0004943' => 'sed', 'Sed0008646' => 'sed', 'Sed0023313' => 'sed', 'Sed0024843' => 'sed', 'SEGI_00081' => 'sgi', 'SEGI_00947' => 'sgi', 'SEGI_04046' => 'sgi', 'SEGI_06880' => 'sgi', 'SEGI_09736' => 'sgi', 'SEGI_12741' => 'sgi', 'SEGI_14530' => 'sgi', 'SEGI_20705' => 'sgi', 'SEGI_26088' => 'sgi', 'SEGI_28323' => 'sgi', 'SEGI_33343' => 'sgi', 'SGA_v2.0_scaffold126G33775' => 'sas', 'SGA_v2.0_scaffold2G01337' => 'sas', 'SGA_v2.0_scaffold38G15006' => 'sas', 'SGA_v2.0_scaffold39G15264' => 'sas', 'SGA_v2.0_scaffold453G51880' => 'sas', 'SHI12696' => 'shi', 'SMO367G1096' => 'smo', 'Solyc01g068630.3' => 'sly', 'Solyc05g011880.3' => 'sly', 'Solyc06g076300.3' => 'sly', 'Solyc09g010940.4' => 'sly', 'Solyc09g075890.3' => 'sly', 'Sopen01g030560' => 'spe', 'Sopen05g006630' => 'spe', 'Sopen06g032720' => 'spe', 'Sopen09g005660' => 'spe', 'Sopen09g030690' => 'spe', 'Sp4g14540' => 'spa', 'Sp4g20030' => 'spa', 'Sp5g01320' => 'spa', 'Sp6g21170' => 'spa', 'Sp6g21180' => 'spa', 'Sp6g21190' => 'spa', 'Sp6g40220' => 'spa', 'TAR362G0122' => 'tar', 'TAR362G1338' => 'tar', 'TAR369G0590' => 'tar', 'TAR371G0824' => 'tar', 'TAR622G1429' => 'tar', 'TAR623G0734' => 'tar', 'TAR625G0441' => 'tar', 'TAR629G0976' => 'tar', 'TAR633G1195' => 'tar', 'TAR636G2660' => 'tar', 'THA.LOC104799440' => 'tha', 'THA.LOC104800966' => 'tha', 'THA.LOC104806559' => 'tha', 'THA.LOC104810765' => 'tha', 'THA.LOC104816266' => 'tha', 'THA.LOC104817419' => 'tha', 'THA.LOC104827021' => 'tha', 'Thecc.01G327400' => 'tca', 'Thecc.04G229200' => 'tca', 'Thecc.05G037400' => 'tca', 'Thecc.09G318600' => 'tca', 'Thecc.09G318700' => 'tca', 'Thhalv10006238m.g' => 'esa', 'Thhalv10014321m.g' => 'esa', 'Thhalv10014335m.g' => 'esa', 'Thhalv10015826m.g' => 'esa', 'Thhalv10017107m.g' => 'esa', 'Thhalv10017180m.g' => 'esa', 'Thhalv10029339m.g' => 'esa', 'TPR.G1699' => 'tpr', 'TPR.G23609' => 'tpr', 'TPR.G3081' => 'tpr', 'TPR.G40397' => 'tpr', 'TPR.G5522' => 'tpr', 'TPR.G5618' => 'tpr', 'TPR.G5626' => 'tpr', 'TWI09G1632' => 'twi', 'TWI23G1230' => 'twi', 'TWI53G1064' => 'twi', 'TWI59G0751' => 'twi', 'TWI74G0947' => 'twi', 'TWI77G0337' => 'twi', 'TWI79G1254' => 'twi', 'unitig_0.g2341' => 'ugi', 'unitig_26.g10006' => 'ugi', 'unitig_26.g10008' => 'ugi', 'unitig_26.g9192' => 'ugi', 'vmacro14547' => 'vma', 'vmacro15333' => 'vma', 'vmacro18743' => 'vma', 'vmacro20166' => 'vma', 'VMungo0331G0523' => 'vmu', 'VMungo0331G1202' => 'vmu', 'VMungo0720G1228' => 'vmu', 'VMungo0720G1514' => 'vmu', 'VMungo1080G0169' => 'vmu', 'VMungo1127G1475' => 'vmu', 'VMungo1383G1208' => 'vmu', 'VMungo1383G1698' => 'vmu', 'Zm00001eb012270' => 'zma', 'Zm00001eb054100' => 'zma', 'Zm00001eb063350' => 'zma', 'Zm00001eb328560' => 'zma', 'Zm00001eb342820' => 'zma', 'Zm00001eb362210' => 'zma', 'Zm00001eb397730' => 'zma', 'Zm00001eb399750' => 'zma' ) $gf_id = 'HOM05D000959' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000959' ) $data_identifier = 'HOM05D000959' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 5, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 5, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 10, 'mbi' => (int) 3, 'mco' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 2, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 3, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 11, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399750' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000959', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '622', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p07100' => 'bna', 'A03p11720' => 'bna', 'A05p08300' => 'bna', 'A05p13380' => 'bna', 'A09p54130' => 'bna', 'A10p16690' => 'bna', 'A10p16700' => 'bna', 'A10p33390' => 'bna', 'Aa31LG10G16020' => 'aar', 'Aa31LG1G11810' => 'aar', 'Aa31LG1G11830' => 'aar', 'Aa31LG1G22510' => 'aar', 'Aa31LG5G4890' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5793' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2310' => 'aag', 'Actinidia08499' => 'ach', 'Actinidia11262' => 'ach', 'Actinidia23926' => 'ach', 'Actinidia34420' => 'ach', 'Actinidia36970' => 'ach', 'Ah.02g111220' => 'amhyb', 'Ah.15g097750' => 'amhyb', 'AL4G27500' => 'aly', 'AL6G11470' => 'aly', 'AL8G35950' => 'aly', 'AL8G35960' => 'aly', 'AL8G35970' => 'aly', 'Aqoxy1G00912' => 'aox', 'Aqoxy2G02253' => 'aox', 'Aqoxy2G02411' => 'aox', 'Aqoxy5G00485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BZ66YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K8ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM4FUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6BF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HFV7XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25JBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0YNNV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MAKK6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P70IT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP2Z6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V61LZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YWP64R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3S9AI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7PGHH' => 'arhy', 'AT2G32150' => 'ath', 'AT3G62040' => 'ath', 'AT5G02230' => 'ath', 'AT5G59480' => 'ath', 'AT5G59490' => 'ath', 'ATR0332G060' => 'atr', 'ATR0559G190' => 'atr', 'ATR0693G294' => 'atr', 'Atru.chr3.3975' => 'acertr', 'Atru.chr3.3976' => 'acertr', 'Atru.chr3.3977' => 'acertr', 'Atru.chr4.2498' => 'acertr', 'Atru.chr5.838' => 'acertr', 'Atru.chr8.1990' => 'acertr', 'Atru.chr8.1991' => 'acertr', 'Atru.chr8.1992' => 'acertr', 'AUR62001759' => 'cqu', 'AUR62009545' => 'cqu', 'AUR62010474' => 'cqu', 'AUR62025820' => 'cqu', 'AUR62030422' => 'cqu', 'AUR62033605' => 'cqu', 'AUR62038615' => 'cqu', 'AUR62041347' => 'cqu', 'BcaB01g04574' => 'bca', 'BcaB02g09263' => 'bca', 'BcaB02g10453' => 'bca', 'BcaB05g22513' => 'bca', 'BcaB08g36253' => 'bca', 'BcaB08g36254' => 'bca', 'BcaC01g06519' => 'bca', 'BcaC02g11889' => 'bca', 'BcaC03g14010' => 'bca', 'BcaC03g18439' => 'bca', 'BcaC04g19765' => 'bca', 'BcaC09g48432' => 'bca', 'BcaNung07302' => 'bca', 'BolC2t06040H' => 'bol', 'BolC2t07346H' => 'bol', 'BolC3t13817H' => 'bol', 'BolC4t22625H' => 'bol', 'BolC4t23297H' => 'bol', 'BolC8t51278H' => 'bol', 'BolC9t58050H' => 'bol', 'BolC9t58051H' => 'bol', 'BolC9t60163H' => 'bol', 'BraA02t04712Z' => 'bra', 'BraA02t05791Z' => 'bra', 'BraA03t10483Z' => 'bra', 'BraA05t19795Z' => 'bra', 'BraA05t20276Z' => 'bra', 'BraA09t40827Z' => 'bra', 'BraA10t43750Z' => 'bra', 'BraA10t43751Z' => 'bra', 'BraA10t45370Z' => 'bra', 'C02p00400' => 'bna', 'C02p12460' => 'bna', 'C03p13680' => 'bna', 'C04p10270' => 'bna', 'C04p17500' => 'bna', 'C08p37010' => 'bna', 'C09p51880' => 'bna', 'C09p51890' => 'bna', 'C09p74300' => 'bna', 'CAN.G179.26' => 'can', 'CAN.G3384.1' => 'can', 'CAN.G394.68' => 'can', 'CAN.G907.13' => 'can', 'CANSAT11G0012' => 'cansat', 'CANSAT25G1586' => 'cansat', 'CANSAT35G0735' => 'cansat', 'CANSAT54G0556' => 'cansat', 'CANSAT64G0356' => 'cansat', 'CANSAT78G2042' => 'cansat', 'CARHR125920' => 'chi', 'CARHR131910' => 'chi', 'CARHR172390' => 'chi', 'CARHR211140' => 'chi', 'CARHR285850' => 'chi', 'CARHR285860' => 'chi', 'Carub.0004s1347' => 'cru', 'Carub.0004s1960' => 'cru', 'Carub.0005s2880' => 'cru', 'Carub.0006s0107' => 'cru', 'Carub.0008s2015' => 'cru', 'Carub.0008s2016' => 'cru', 'Carub.0008s2017' => 'cru', 'Ca_01315_v3' => 'car', 'Ca_05063_v3' => 'car', 'Ca_10231_v3' => 'car', 'Ca_10913_v3' => 'car', 'Ca_19156_v3' => 'car', 'Ca_23644_v3' => 'car', 'Ca_26735_v3' => 'car', 'Cc01_g13130' => 'ccan', 'Cc02_g21690' => 'ccan', 'Cc03_g03600' => 'ccan', 'Cc06_g02510' => 'ccan', 'CDE02G1265' => 'cde', 'CDE05G0415' => 'cde', 'CDE08G1082' => 'cde', 'Cfa005780' => 'cfa', 'Cfa011522' => 'cfa', 'Cfa011523' => 'cfa', 'Cfa015627' => 'cfa', 'Cfa017359' => 'cfa', 'Ciclev10005687m.g' => 'ccl', 'Ciclev10012173m.g' => 'ccl', 'Ciclev10021621m.g' => 'ccl', 'Ciclev10028968m.g' => 'ccl', 'Ciclev10029907m.g' => 'ccl', 'CiPaw.01G164800' => 'cil', 'CiPaw.07G083700' => 'cil', 'CiPaw.07G127000' => 'cil', 'CiPaw.07G136900' => 'cil', 'CiPaw.08G081700' => 'cil', 'CiPaw.09G194600' => 'cil', 'CiPaw.10G146500' => 'cil', 'CiPaw.13G091500' => 'cil', 'CiPaw.13G091600' => 'cil', 'ClCG00G003390' => 'cla', 'ClCG01G007220' => 'cla', 'ClCG03G001370' => 'cla', 'ClCG04G008100' => 'cla', 'ClCG06G006110' => 'cla', 'ClCG06G006130' => 'cla', 'ClCG10G021210' => 'cla', 'COL.COLO4_07648' => 'col', 'COL.COLO4_07650' => 'col', 'COL.COLO4_07651' => 'col', 'COL.COLO4_14780' => 'col', 'COL.COLO4_18546' => 'col', 'COL.COLO4_18547' => 'col', 'COL.COLO4_23103' => 'col', 'COL.COLO4_30419' => 'col', 'COL.COLO4_34232' => 'col', 'Cpa.g.sc169.20' => 'cpa', 'Cpa.g.sc57.45' => 'cpa', 'Cpa.g.sc58.124' => 'cpa', 'Cpa.g.sc58.125' => 'cpa', 'Cpa.g.sc81.118' => 'cpa', 'Cpa.g.sc81.119' => 'cpa', 'Cre12.g524700' => 'cre', 'CsaV3_1G034430' => 'csa', 'CsaV3_1G034440' => 'csa', 'CsaV3_1G034450' => 'csa', 'CsaV3_3G034830' => 'csa', 'CsaV3_4G025090' => 'csa', 'CsaV3_5G018660' => 'csa', 'CsaV3_6G038160' => 'csa', 'CSS0003447' => 'camsi', 'CSS0017840' => 'camsi', 'CSS0019260' => 'camsi', 'CSS0040375' => 'camsi', 'CSS0042533' => 'camsi', 'DCAR_005960' => 'dca', 'DCAR_012104' => 'dca', 'DCAR_012105' => 'dca', 'DCAR_012293' => 'dca', 'DCAR_015632' => 'dca', 'DCAR_024602' => 'dca', 'DCAR_028752' => 'dca', 'Dinv06261' => 'din', 'Dinv13982' => 'din', 'Dinv17029' => 'din', 'Dinv18463' => 'din', 'Dinv33181' => 'din', 'Dinv35585' => 'din', 'Dinv37161' => 'din', 'Dinv42977' => 'din', 'Dinv43122' => 'din', 'Dinv44517' => 'din', 'Duzib093G0256' => 'dzi', 'Duzib106G1254' => 'dzi', 'Duzib128G1789' => 'dzi', 'Duzib133G0633' => 'dzi', 'Duzib138G0510' => 'dzi', 'Duzib150G1084' => 'dzi', 'Duzib168G0488' => 'dzi', 'Duzib168G1523' => 'dzi', 'Duzib170G0133' => 'dzi', 'ECA234G1433' => 'eca', 'ECA236G1432' => 'eca', 'ECA236G2256' => 'eca', 'ECA236G2365' => 'eca', 'ECA236G4830' => 'eca', 'ECA248G1505' => 'eca', 'EL10Ac3g06431' => 'bvu', 'EL10Ac5g12577' => 'bvu', 'EL10Ac6g13533' => 'bvu', 'EL10Ac7g16045' => 'bvu', 'Eucgr.A01281' => 'egr', 'Eucgr.B02326' => 'egr', 'Eucgr.H03532' => 'egr', 'Eucgr.K00553' => 'egr', 'Eucgr.K03116' => 'egr', 'FAN02G3963' => 'fan', 'FAN05G0438' => 'fan', 'FAN09G2434' => 'fan', 'FAN12G3984' => 'fan', 'FAN14G0798' => 'fan', 'FAN17G0652' => 'fan', 'FAN19G1988' => 'fan', 'FAN22G0632' => 'fan', 'FAN23G0387' => 'fan', 'FAN26G1323' => 'fan', 'FAN28G0666' => 'fan', 'FvH4_1g26080' => 'fve', 'FvH4_3g36780' => 'fve', 'FvH4_4g15270' => 'fve', 'FvH4_6g13490' => 'fve', 'Glyma.01G098700' => 'gma', 'Glyma.03G065900' => 'gma', 'Glyma.03G073754' => 'gma', 'Glyma.03G073758' => 'gma', 'Glyma.03G083200' => 'gma', 'Glyma.03G225500' => 'gma', 'Glyma.05G037766' => 'gma', 'Glyma.07G133500' => 'gma', 'Glyma.10G139400' => 'gma', 'Glyma.10G248900' => 'gma', 'Glyma.11G137800' => 'gma', 'Glyma.12G061300' => 'gma', 'Glyma.13G337900' => 'gma', 'Glyma.15G036600' => 'gma', 'Glyma.18G182800' => 'gma', 'Glyma.19G222500' => 'gma', 'Glyma.20G144800' => 'gma', 'Gohir.A01G222000' => 'ghi', 'Gohir.A03G044000' => 'ghi', 'Gohir.A03G044100' => 'ghi', 'Gohir.A04G083100' => 'ghi', 'Gohir.A07G127200' => 'ghi', 'Gohir.A07G132400' => 'ghi', 'Gohir.A08G000700' => 'ghi', 'Gohir.A11G327300' => 'ghi', 'Gohir.D01G211500' => 'ghi', 'Gohir.D03G123400' => 'ghi', 'Gohir.D03G123500' => 'ghi', 'Gohir.D04G121800' => 'ghi', 'Gohir.D07G131500' => 'ghi', 'Gohir.D07G136600' => 'ghi', 'Gohir.D08G011600' => 'ghi', 'Gohir.D11G346200' => 'ghi', 'Gorai.001G142800' => 'gra', 'Gorai.001G148700' => 'gra', 'Gorai.002G257300' => 'gra', 'Gorai.003G130000' => 'gra', 'Gorai.003G130100' => 'gra', 'Gorai.004G005300' => 'gra', 'Gorai.007G376500' => 'gra', 'Gorai.012G104700' => 'gra', 'GSVIVG01017946001' => 'vvi', 'GSVIVG01024928001' => 'vvi', 'GSVIVG01028227001' => 'vvi', 'GSVIVG01034151001' => 'vvi', 'HanXRQChr05g0135031' => 'han', 'HanXRQChr05g0135041' => 'han', 'HanXRQChr05g0140021' => 'han', 'HanXRQChr06g0178981' => 'han', 'HanXRQChr07g0188251' => 'han', 'HanXRQChr08g0235311' => 'han', 'HanXRQChr09g0271011' => 'han', 'HanXRQChr10g0293321' => 'han', 'HanXRQChr13g0388171' => 'han', 'Haze_00916' => 'cav', 'Haze_05063' => 'cav', 'Haze_20814' => 'cav', 'Haze_24128' => 'cav', 'Hma1.2p1_0745F.1_g212010' => 'hma', 'Hma1.2p1_0757F.1_g213260' => 'hma', 'Hma1.2p1_0936F.1_g238840' => 'hma', 'Hma1.2p1_1735F.1_g299890' => 'hma', 'Hma1.2p1_1861F.1_g305685' => 'hma', 'HPP92_003397' => 'vpl', 'HPP92_012597' => 'vpl', 'HPP92_015520' => 'vpl', 'HPP92_015539' => 'vpl', 'HPP92_020373' => 'vpl', 'Hund04938' => 'sun', 'Hund10677' => 'sun', 'Hund11033' => 'sun', 'Hund12155' => 'sun', 'Lalb_Chr01g0022551' => 'lal', 'Lalb_Chr03g0042341' => 'lal', 'Lalb_Chr07g0192931' => 'lal', 'Lalb_Chr12g0209551' => 'lal', 'Lalb_Chr19g0125251' => 'lal', 'Lalb_Chr19g0137891' => 'lal', 'Lalb_Chr21g0304641' => 'lal', 'Lalb_Chr21g0309881' => 'lal', 'Lj1A5T12' => 'lonja', 'Lj1C148G10' => 'lonja', 'Lj2A93T83' => 'lonja', 'Lj3A738G68' => 'lonja', 'Lj3C966T1' => 'lonja', 'Lj3g0018958' => 'lja', 'Lj3g0021831' => 'lja', 'Lj3g0025443' => 'lja', 'Lj4g0026809' => 'lja', 'Lj5g0012558' => 'lja', 'Lj5g0021586' => 'lja', 'Lsat_1_v5_gn_5_156840' => 'lsa', 'Lsat_1_v5_gn_8_73460' => 'lsa', 'Lsat_1_v5_gn_8_73481' => 'lsa', 'Lsat_1_v5_gn_9_31601' => 'lsa', 'Lsat_1_v5_gn_9_77320' => 'lsa', 'Manes.01G171300' => 'mes', 'Manes.01G171400' => 'mes', 'Manes.01G236100' => 'mes', 'Manes.02G130500' => 'mes', 'Manes.02G130600' => 'mes', 'Manes.03G180200' => 'mes', 'Manes.05G007000' => 'mes', 'Manes.08G084400' => 'mes', 'Manes.09G092600' => 'mes', 'Manes.15G027900' => 'mes', 'MBI04_g40948_MAGBIO' => 'mbi', 'MBI14_g12123_MAGBIO' => 'mbi', 'MBI18_g28915_MAGBIO' => 'mbi', 'MCO09G053' => 'mco', 'MCO11G782' => 'mco', 'MCO15G215' => 'mco', 'MD03G1088500' => 'mdo', 'MD03G1088600' => 'mdo', 'MD04G1130800' => 'mdo', 'MD09G1291700' => 'mdo', 'MD11G1097500' => 'mdo', 'MD11G1097600' => 'mdo', 'MD12G1143900' => 'mdo', 'MD13G1191400' => 'mdo', 'MD16G1191500' => 'mdo', 'Medtr1g085570' => 'mtr', 'Medtr1g104610' => 'mtr', 'Medtr2g097520' => 'mtr', 'Medtr4g021800' => 'mtr', 'Medtr4g021825' => 'mtr', 'Medtr4g064270' => 'mtr', 'Medtr4g064380' => 'mtr', 'Medtr7g062150' => 'mtr', 'MELO3C003138.2' => 'cme', 'MELO3C005187.2' => 'cme', 'MELO3C009252.2' => 'cme', 'MELO3C014481.2' => 'cme', 'MELO3C020616.2' => 'cme', 'MELO3C020617.2' => 'cme', 'MELO3C020618.2' => 'cme', 'Migut.G00328' => 'egut', 'Migut.J00320' => 'egut', 'Migut.L01000' => 'egut', 'Migut.L01953' => 'egut', 'MSTRG.10253' => 'ama', 'MSTRG.19077' => 'ama', 'MSTRG.26780' => 'ama', 'MSTRG.4023' => 'ama', 'MSTRG.5655' => 'ama', 'MSTRG.9992' => 'ama', 'Nitab4.5_0000043g0310' => 'nta', 'Nitab4.5_0000463g0080' => 'nta', 'Nitab4.5_0000705g0170' => 'nta', 'Nitab4.5_0001326g0060' => 'nta', 'Nitab4.5_0001628g0030' => 'nta', 'Nitab4.5_0002103g0110' => 'nta', 'Nitab4.5_0002946g0030' => 'nta', 'Nitab4.5_0004639g0030' => 'nta', 'Nn2g11149' => 'nnu', 'Nn2g13389' => 'nnu', 'Nn4g25326' => 'nnu', 'Nn4g26290' => 'nnu', 'Nn5g29865' => 'nnu', 'Oeu004163.1' => 'oeu', 'Oeu006901.1' => 'oeu', 'Oeu010096.1' => 'oeu', 'Oeu024340.1' => 'oeu', 'Oeu048369.1' => 'oeu', 'Os01g0973000' => 'osa', 'Os03g0273800' => 'osa', 'Os03g0701200' => 'osa', 'Os03g0834050' => 'osa', 'Os07g0634400' => 'osa', 'Peaxi162Scf00092g01414' => 'pax', 'Peaxi162Scf00165g00818' => 'pax', 'Peaxi162Scf00309g00516' => 'pax', 'Peaxi162Scf00774g00218' => 'pax', 'PGR004G1824' => 'pgr', 'PGR004G2606' => 'pgr', 'PGR031G2716' => 'pgr', 'PGR102G2460' => 'pgr', 'PGR142G2599' => 'pgr', 'PGSC0003DMG400000843' => 'stu', 'PGSC0003DMG400008829' => 'stu', 'PGSC0003DMG400030418' => 'stu', 'PGSC0003DMG400031834' => 'stu', 'PGSC0003DMG401028300' => 'stu', 'PGSC0003DMG402028300' => 'stu', 'Phvul.001G219300' => 'pvu', 'Phvul.007G056000' => 'pvu', 'Phvul.007G208000' => 'pvu', 'Phvul.008G119500' => 'pvu', 'Phvul.010G011200' => 'pvu', 'Phvul.010G014800' => 'pvu', 'Phvul.011G062900' => 'pvu', 'Phvul.L007043' => 'pvu', 'Potri.001G242300' => 'ptr', 'Potri.002G185300' => 'ptr', 'Potri.006G086900' => 'ptr', 'Potri.008G151700' => 'ptr', 'Potri.009G033500' => 'ptr', 'Potri.010G089300' => 'ptr', 'Potri.014G110800' => 'ptr', 'Pp3c27_8130' => 'ppa', 'Pp3c6_27410' => 'ppa', 'PRCOL_00001659' => 'pco', 'PRCOL_00001927' => 'pco', 'PRCOL_00003649' => 'pco', 'Prupe.1G011600' => 'ppe', 'Prupe.3G000800' => 'ppe', 'Prupe.3G001100' => 'ppe', 'Prupe.6G072700' => 'ppe', 'Prupe.6G072800' => 'ppe', 'Prupe.6G257300' => 'ppe', 'Prupe.8G033000' => 'ppe', 'Psat0s2633g0080' => 'psa', 'Psat0s3396g0080' => 'psa', 'Psat0s3396g0200' => 'psa', 'Psat3g139080' => 'psa', 'Psat5g285080' => 'psa', 'Psat6g157760' => 'psa', 'Psat6g208440' => 'psa', 'Psat7g215320' => 'psa', 'Psat7g215400' => 'psa', 'Psat7g235600' => 'psa', 'Psat7g235760' => 'psa', 'PSO063G4603' => 'pso', 'PSO210G0182' => 'pso', 'PSO210G0196' => 'pso', 'PSO339G0394' => 'pso', 'PSO339G4127' => 'pso', 'PSO513G0064' => 'pso', 'PSO761G0079' => 'pso', 'QL01p031003' => 'qlo', 'QL01p031078' => 'qlo', 'QL06p003004' => 'qlo', 'QL07p048731' => 'qlo', 'QL09p037427' => 'qlo', 'RcHm_v2.0_Chr3g0466361' => 'rch', 'RcHm_v2.0_Chr3g0485571' => 'rch', 'RcHm_v2.0_Chr4g0416551' => 'rch', 'RcHm_v2.0_Chr5g0065831' => 'rch', 'Rhsim01G0230500' => 'rsi', 'Rhsim05G0194000' => 'rsi', 'Rhsim08G0250400' => 'rsi', 'Sabra02G0131000' => 'sbr', 'Sabra06G0066300' => 'sbr', 'Sabra08G0115500' => 'sbr', 'Sabra09G0023900' => 'sbr', 'Sabra10G0054000' => 'sbr', 'Sabra14G0081500' => 'sbr', 'Sabra16G0147100' => 'sbr', 'SalBow2G2957' => 'sbo', 'SalBow4G3320' => 'sbo', 'SalBow8G1894' => 'sbo', 'Sc07g0007950' => 'sci', 'Sc12g0001360' => 'sci', 'Sc13g0004330' => 'sci', 'Sc20g0005010' => 'sci', 'Sed0000361' => 'sed', 'Sed0001706' => 'sed', 'Sed0002422' => 'sed', 'Sed0004029' => 'sed', 'Sed0004602' => 'sed', 'Sed0004943' => 'sed', 'Sed0008646' => 'sed', 'Sed0023313' => 'sed', 'Sed0024843' => 'sed', 'SEGI_00081' => 'sgi', 'SEGI_00947' => 'sgi', 'SEGI_04046' => 'sgi', 'SEGI_06880' => 'sgi', 'SEGI_09736' => 'sgi', 'SEGI_12741' => 'sgi', 'SEGI_14530' => 'sgi', 'SEGI_20705' => 'sgi', 'SEGI_26088' => 'sgi', 'SEGI_28323' => 'sgi', 'SEGI_33343' => 'sgi', 'SGA_v2.0_scaffold126G33775' => 'sas', 'SGA_v2.0_scaffold2G01337' => 'sas', 'SGA_v2.0_scaffold38G15006' => 'sas', 'SGA_v2.0_scaffold39G15264' => 'sas', 'SGA_v2.0_scaffold453G51880' => 'sas', 'SHI12696' => 'shi', 'SMO367G1096' => 'smo', 'Solyc01g068630.3' => 'sly', 'Solyc05g011880.3' => 'sly', 'Solyc06g076300.3' => 'sly', 'Solyc09g010940.4' => 'sly', 'Solyc09g075890.3' => 'sly', 'Sopen01g030560' => 'spe', 'Sopen05g006630' => 'spe', 'Sopen06g032720' => 'spe', 'Sopen09g005660' => 'spe', 'Sopen09g030690' => 'spe', 'Sp4g14540' => 'spa', 'Sp4g20030' => 'spa', 'Sp5g01320' => 'spa', 'Sp6g21170' => 'spa', 'Sp6g21180' => 'spa', 'Sp6g21190' => 'spa', 'Sp6g40220' => 'spa', 'TAR362G0122' => 'tar', 'TAR362G1338' => 'tar', 'TAR369G0590' => 'tar', 'TAR371G0824' => 'tar', 'TAR622G1429' => 'tar', 'TAR623G0734' => 'tar', 'TAR625G0441' => 'tar', 'TAR629G0976' => 'tar', 'TAR633G1195' => 'tar', 'TAR636G2660' => 'tar', 'THA.LOC104799440' => 'tha', 'THA.LOC104800966' => 'tha', 'THA.LOC104806559' => 'tha', 'THA.LOC104810765' => 'tha', 'THA.LOC104816266' => 'tha', 'THA.LOC104817419' => 'tha', 'THA.LOC104827021' => 'tha', 'Thecc.01G327400' => 'tca', 'Thecc.04G229200' => 'tca', 'Thecc.05G037400' => 'tca', 'Thecc.09G318600' => 'tca', 'Thecc.09G318700' => 'tca', 'Thhalv10006238m.g' => 'esa', 'Thhalv10014321m.g' => 'esa', 'Thhalv10014335m.g' => 'esa', 'Thhalv10015826m.g' => 'esa', 'Thhalv10017107m.g' => 'esa', 'Thhalv10017180m.g' => 'esa', 'Thhalv10029339m.g' => 'esa', 'TPR.G1699' => 'tpr', 'TPR.G23609' => 'tpr', 'TPR.G3081' => 'tpr', 'TPR.G40397' => 'tpr', 'TPR.G5522' => 'tpr', 'TPR.G5618' => 'tpr', 'TPR.G5626' => 'tpr', 'TWI09G1632' => 'twi', 'TWI23G1230' => 'twi', 'TWI53G1064' => 'twi', 'TWI59G0751' => 'twi', 'TWI74G0947' => 'twi', 'TWI77G0337' => 'twi', 'TWI79G1254' => 'twi', 'unitig_0.g2341' => 'ugi', 'unitig_26.g10006' => 'ugi', 'unitig_26.g10008' => 'ugi', 'unitig_26.g9192' => 'ugi', 'vmacro14547' => 'vma', 'vmacro15333' => 'vma', 'vmacro18743' => 'vma', 'vmacro20166' => 'vma', 'VMungo0331G0523' => 'vmu', 'VMungo0331G1202' => 'vmu', 'VMungo0720G1228' => 'vmu', 'VMungo0720G1514' => 'vmu', 'VMungo1080G0169' => 'vmu', 'VMungo1127G1475' => 'vmu', 'VMungo1383G1208' => 'vmu', 'VMungo1383G1698' => 'vmu', 'Zm00001eb012270' => 'zma', 'Zm00001eb054100' => 'zma', 'Zm00001eb063350' => 'zma', 'Zm00001eb328560' => 'zma', 'Zm00001eb342820' => 'zma', 'Zm00001eb362210' => 'zma', 'Zm00001eb397730' => 'zma', 'Zm00001eb399750' => 'zma' ), 'gf_id' => 'HOM05D000959', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000959' ), 'data_identifier' => 'HOM05D000959', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000959', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '622', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p07100' => 'bna', 'A03p11720' => 'bna', 'A05p08300' => 'bna', 'A05p13380' => 'bna', 'A09p54130' => 'bna', 'A10p16690' => 'bna', 'A10p16700' => 'bna', 'A10p33390' => 'bna', 'Aa31LG10G16020' => 'aar', 'Aa31LG1G11810' => 'aar', 'Aa31LG1G11830' => 'aar', 'Aa31LG1G22510' => 'aar', 'Aa31LG5G4890' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5793' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2310' => 'aag', 'Actinidia08499' => 'ach', 'Actinidia11262' => 'ach', 'Actinidia23926' => 'ach', 'Actinidia34420' => 'ach', 'Actinidia36970' => 'ach', 'Ah.02g111220' => 'amhyb', 'Ah.15g097750' => 'amhyb', 'AL4G27500' => 'aly', 'AL6G11470' => 'aly', 'AL8G35950' => 'aly', 'AL8G35960' => 'aly', 'AL8G35970' => 'aly', 'Aqoxy1G00912' => 'aox', 'Aqoxy2G02253' => 'aox', 'Aqoxy2G02411' => 'aox', 'Aqoxy5G00485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BZ66YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K8ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM4FUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6BF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HFV7XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25JBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0YNNV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MAKK6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P70IT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP2Z6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V61LZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YWP64R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3S9AI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7PGHH' => 'arhy', 'AT2G32150' => 'ath', 'AT3G62040' => 'ath', 'AT5G02230' => 'ath', 'AT5G59480' => 'ath', 'AT5G59490' => 'ath', 'ATR0332G060' => 'atr', 'ATR0559G190' => 'atr', 'ATR0693G294' => 'atr', 'Atru.chr3.3975' => 'acertr', 'Atru.chr3.3976' => 'acertr', 'Atru.chr3.3977' => 'acertr', 'Atru.chr4.2498' => 'acertr', 'Atru.chr5.838' => 'acertr', 'Atru.chr8.1990' => 'acertr', 'Atru.chr8.1991' => 'acertr', 'Atru.chr8.1992' => 'acertr', 'AUR62001759' => 'cqu', 'AUR62009545' => 'cqu', 'AUR62010474' => 'cqu', 'AUR62025820' => 'cqu', 'AUR62030422' => 'cqu', 'AUR62033605' => 'cqu', 'AUR62038615' => 'cqu', 'AUR62041347' => 'cqu', 'BcaB01g04574' => 'bca', 'BcaB02g09263' => 'bca', 'BcaB02g10453' => 'bca', 'BcaB05g22513' => 'bca', 'BcaB08g36253' => 'bca', 'BcaB08g36254' => 'bca', 'BcaC01g06519' => 'bca', 'BcaC02g11889' => 'bca', 'BcaC03g14010' => 'bca', 'BcaC03g18439' => 'bca', 'BcaC04g19765' => 'bca', 'BcaC09g48432' => 'bca', 'BcaNung07302' => 'bca', 'BolC2t06040H' => 'bol', 'BolC2t07346H' => 'bol', 'BolC3t13817H' => 'bol', 'BolC4t22625H' => 'bol', 'BolC4t23297H' => 'bol', 'BolC8t51278H' => 'bol', 'BolC9t58050H' => 'bol', 'BolC9t58051H' => 'bol', 'BolC9t60163H' => 'bol', 'BraA02t04712Z' => 'bra', 'BraA02t05791Z' => 'bra', 'BraA03t10483Z' => 'bra', 'BraA05t19795Z' => 'bra', 'BraA05t20276Z' => 'bra', 'BraA09t40827Z' => 'bra', 'BraA10t43750Z' => 'bra', 'BraA10t43751Z' => 'bra', 'BraA10t45370Z' => 'bra', 'C02p00400' => 'bna', 'C02p12460' => 'bna', 'C03p13680' => 'bna', 'C04p10270' => 'bna', 'C04p17500' => 'bna', 'C08p37010' => 'bna', 'C09p51880' => 'bna', 'C09p51890' => 'bna', 'C09p74300' => 'bna', 'CAN.G179.26' => 'can', 'CAN.G3384.1' => 'can', 'CAN.G394.68' => 'can', 'CAN.G907.13' => 'can', 'CANSAT11G0012' => 'cansat', 'CANSAT25G1586' => 'cansat', 'CANSAT35G0735' => 'cansat', 'CANSAT54G0556' => 'cansat', 'CANSAT64G0356' => 'cansat', 'CANSAT78G2042' => 'cansat', 'CARHR125920' => 'chi', 'CARHR131910' => 'chi', 'CARHR172390' => 'chi', 'CARHR211140' => 'chi', 'CARHR285850' => 'chi', 'CARHR285860' => 'chi', 'Carub.0004s1347' => 'cru', 'Carub.0004s1960' => 'cru', 'Carub.0005s2880' => 'cru', 'Carub.0006s0107' => 'cru', 'Carub.0008s2015' => 'cru', 'Carub.0008s2016' => 'cru', 'Carub.0008s2017' => 'cru', 'Ca_01315_v3' => 'car', 'Ca_05063_v3' => 'car', 'Ca_10231_v3' => 'car', 'Ca_10913_v3' => 'car', 'Ca_19156_v3' => 'car', 'Ca_23644_v3' => 'car', 'Ca_26735_v3' => 'car', 'Cc01_g13130' => 'ccan', 'Cc02_g21690' => 'ccan', 'Cc03_g03600' => 'ccan', 'Cc06_g02510' => 'ccan', 'CDE02G1265' => 'cde', 'CDE05G0415' => 'cde', 'CDE08G1082' => 'cde', 'Cfa005780' => 'cfa', 'Cfa011522' => 'cfa', 'Cfa011523' => 'cfa', 'Cfa015627' => 'cfa', 'Cfa017359' => 'cfa', 'Ciclev10005687m.g' => 'ccl', 'Ciclev10012173m.g' => 'ccl', 'Ciclev10021621m.g' => 'ccl', 'Ciclev10028968m.g' => 'ccl', 'Ciclev10029907m.g' => 'ccl', 'CiPaw.01G164800' => 'cil', 'CiPaw.07G083700' => 'cil', 'CiPaw.07G127000' => 'cil', 'CiPaw.07G136900' => 'cil', 'CiPaw.08G081700' => 'cil', 'CiPaw.09G194600' => 'cil', 'CiPaw.10G146500' => 'cil', 'CiPaw.13G091500' => 'cil', 'CiPaw.13G091600' => 'cil', 'ClCG00G003390' => 'cla', 'ClCG01G007220' => 'cla', 'ClCG03G001370' => 'cla', 'ClCG04G008100' => 'cla', 'ClCG06G006110' => 'cla', 'ClCG06G006130' => 'cla', 'ClCG10G021210' => 'cla', 'COL.COLO4_07648' => 'col', 'COL.COLO4_07650' => 'col', 'COL.COLO4_07651' => 'col', 'COL.COLO4_14780' => 'col', 'COL.COLO4_18546' => 'col', 'COL.COLO4_18547' => 'col', 'COL.COLO4_23103' => 'col', 'COL.COLO4_30419' => 'col', 'COL.COLO4_34232' => 'col', 'Cpa.g.sc169.20' => 'cpa', 'Cpa.g.sc57.45' => 'cpa', 'Cpa.g.sc58.124' => 'cpa', 'Cpa.g.sc58.125' => 'cpa', 'Cpa.g.sc81.118' => 'cpa', 'Cpa.g.sc81.119' => 'cpa', 'Cre12.g524700' => 'cre', 'CsaV3_1G034430' => 'csa', 'CsaV3_1G034440' => 'csa', 'CsaV3_1G034450' => 'csa', 'CsaV3_3G034830' => 'csa', 'CsaV3_4G025090' => 'csa', 'CsaV3_5G018660' => 'csa', 'CsaV3_6G038160' => 'csa', 'CSS0003447' => 'camsi', 'CSS0017840' => 'camsi', 'CSS0019260' => 'camsi', 'CSS0040375' => 'camsi', 'CSS0042533' => 'camsi', 'DCAR_005960' => 'dca', 'DCAR_012104' => 'dca', 'DCAR_012105' => 'dca', 'DCAR_012293' => 'dca', 'DCAR_015632' => 'dca', 'DCAR_024602' => 'dca', 'DCAR_028752' => 'dca', 'Dinv06261' => 'din', 'Dinv13982' => 'din', 'Dinv17029' => 'din', 'Dinv18463' => 'din', 'Dinv33181' => 'din', 'Dinv35585' => 'din', 'Dinv37161' => 'din', 'Dinv42977' => 'din', 'Dinv43122' => 'din', 'Dinv44517' => 'din', 'Duzib093G0256' => 'dzi', 'Duzib106G1254' => 'dzi', 'Duzib128G1789' => 'dzi', 'Duzib133G0633' => 'dzi', 'Duzib138G0510' => 'dzi', 'Duzib150G1084' => 'dzi', 'Duzib168G0488' => 'dzi', 'Duzib168G1523' => 'dzi', 'Duzib170G0133' => 'dzi', 'ECA234G1433' => 'eca', 'ECA236G1432' => 'eca', 'ECA236G2256' => 'eca', 'ECA236G2365' => 'eca', 'ECA236G4830' => 'eca', 'ECA248G1505' => 'eca', 'EL10Ac3g06431' => 'bvu', 'EL10Ac5g12577' => 'bvu', 'EL10Ac6g13533' => 'bvu', 'EL10Ac7g16045' => 'bvu', 'Eucgr.A01281' => 'egr', 'Eucgr.B02326' => 'egr', 'Eucgr.H03532' => 'egr', 'Eucgr.K00553' => 'egr', 'Eucgr.K03116' => 'egr', 'FAN02G3963' => 'fan', 'FAN05G0438' => 'fan', 'FAN09G2434' => 'fan', 'FAN12G3984' => 'fan', 'FAN14G0798' => 'fan', 'FAN17G0652' => 'fan', 'FAN19G1988' => 'fan', 'FAN22G0632' => 'fan', 'FAN23G0387' => 'fan', 'FAN26G1323' => 'fan', 'FAN28G0666' => 'fan', 'FvH4_1g26080' => 'fve', 'FvH4_3g36780' => 'fve', 'FvH4_4g15270' => 'fve', 'FvH4_6g13490' => 'fve', 'Glyma.01G098700' => 'gma', 'Glyma.03G065900' => 'gma', 'Glyma.03G073754' => 'gma', 'Glyma.03G073758' => 'gma', 'Glyma.03G083200' => 'gma', 'Glyma.03G225500' => 'gma', 'Glyma.05G037766' => 'gma', 'Glyma.07G133500' => 'gma', 'Glyma.10G139400' => 'gma', 'Glyma.10G248900' => 'gma', 'Glyma.11G137800' => 'gma', 'Glyma.12G061300' => 'gma', 'Glyma.13G337900' => 'gma', 'Glyma.15G036600' => 'gma', 'Glyma.18G182800' => 'gma', 'Glyma.19G222500' => 'gma', 'Glyma.20G144800' => 'gma', 'Gohir.A01G222000' => 'ghi', 'Gohir.A03G044000' => 'ghi', 'Gohir.A03G044100' => 'ghi', 'Gohir.A04G083100' => 'ghi', 'Gohir.A07G127200' => 'ghi', 'Gohir.A07G132400' => 'ghi', 'Gohir.A08G000700' => 'ghi', 'Gohir.A11G327300' => 'ghi', 'Gohir.D01G211500' => 'ghi', 'Gohir.D03G123400' => 'ghi', 'Gohir.D03G123500' => 'ghi', 'Gohir.D04G121800' => 'ghi', 'Gohir.D07G131500' => 'ghi', 'Gohir.D07G136600' => 'ghi', 'Gohir.D08G011600' => 'ghi', 'Gohir.D11G346200' => 'ghi', 'Gorai.001G142800' => 'gra', 'Gorai.001G148700' => 'gra', 'Gorai.002G257300' => 'gra', 'Gorai.003G130000' => 'gra', 'Gorai.003G130100' => 'gra', 'Gorai.004G005300' => 'gra', 'Gorai.007G376500' => 'gra', 'Gorai.012G104700' => 'gra', 'GSVIVG01017946001' => 'vvi', 'GSVIVG01024928001' => 'vvi', 'GSVIVG01028227001' => 'vvi', 'GSVIVG01034151001' => 'vvi', 'HanXRQChr05g0135031' => 'han', 'HanXRQChr05g0135041' => 'han', 'HanXRQChr05g0140021' => 'han', 'HanXRQChr06g0178981' => 'han', 'HanXRQChr07g0188251' => 'han', 'HanXRQChr08g0235311' => 'han', 'HanXRQChr09g0271011' => 'han', 'HanXRQChr10g0293321' => 'han', 'HanXRQChr13g0388171' => 'han', 'Haze_00916' => 'cav', 'Haze_05063' => 'cav', 'Haze_20814' => 'cav', 'Haze_24128' => 'cav', 'Hma1.2p1_0745F.1_g212010' => 'hma', 'Hma1.2p1_0757F.1_g213260' => 'hma', 'Hma1.2p1_0936F.1_g238840' => 'hma', 'Hma1.2p1_1735F.1_g299890' => 'hma', 'Hma1.2p1_1861F.1_g305685' => 'hma', 'HPP92_003397' => 'vpl', 'HPP92_012597' => 'vpl', 'HPP92_015520' => 'vpl', 'HPP92_015539' => 'vpl', 'HPP92_020373' => 'vpl', 'Hund04938' => 'sun', 'Hund10677' => 'sun', 'Hund11033' => 'sun', 'Hund12155' => 'sun', 'Lalb_Chr01g0022551' => 'lal', 'Lalb_Chr03g0042341' => 'lal', 'Lalb_Chr07g0192931' => 'lal', 'Lalb_Chr12g0209551' => 'lal', 'Lalb_Chr19g0125251' => 'lal', 'Lalb_Chr19g0137891' => 'lal', 'Lalb_Chr21g0304641' => 'lal', 'Lalb_Chr21g0309881' => 'lal', 'Lj1A5T12' => 'lonja', 'Lj1C148G10' => 'lonja', 'Lj2A93T83' => 'lonja', 'Lj3A738G68' => 'lonja', 'Lj3C966T1' => 'lonja', 'Lj3g0018958' => 'lja', 'Lj3g0021831' => 'lja', 'Lj3g0025443' => 'lja', 'Lj4g0026809' => 'lja', 'Lj5g0012558' => 'lja', 'Lj5g0021586' => 'lja', 'Lsat_1_v5_gn_5_156840' => 'lsa', 'Lsat_1_v5_gn_8_73460' => 'lsa', 'Lsat_1_v5_gn_8_73481' => 'lsa', 'Lsat_1_v5_gn_9_31601' => 'lsa', 'Lsat_1_v5_gn_9_77320' => 'lsa', 'Manes.01G171300' => 'mes', 'Manes.01G171400' => 'mes', 'Manes.01G236100' => 'mes', 'Manes.02G130500' => 'mes', 'Manes.02G130600' => 'mes', 'Manes.03G180200' => 'mes', 'Manes.05G007000' => 'mes', 'Manes.08G084400' => 'mes', 'Manes.09G092600' => 'mes', 'Manes.15G027900' => 'mes', 'MBI04_g40948_MAGBIO' => 'mbi', 'MBI14_g12123_MAGBIO' => 'mbi', 'MBI18_g28915_MAGBIO' => 'mbi', 'MCO09G053' => 'mco', 'MCO11G782' => 'mco', 'MCO15G215' => 'mco', 'MD03G1088500' => 'mdo', 'MD03G1088600' => 'mdo', 'MD04G1130800' => 'mdo', 'MD09G1291700' => 'mdo', 'MD11G1097500' => 'mdo', 'MD11G1097600' => 'mdo', 'MD12G1143900' => 'mdo', 'MD13G1191400' => 'mdo', 'MD16G1191500' => 'mdo', 'Medtr1g085570' => 'mtr', 'Medtr1g104610' => 'mtr', 'Medtr2g097520' => 'mtr', 'Medtr4g021800' => 'mtr', 'Medtr4g021825' => 'mtr', 'Medtr4g064270' => 'mtr', 'Medtr4g064380' => 'mtr', 'Medtr7g062150' => 'mtr', 'MELO3C003138.2' => 'cme', 'MELO3C005187.2' => 'cme', 'MELO3C009252.2' => 'cme', 'MELO3C014481.2' => 'cme', 'MELO3C020616.2' => 'cme', 'MELO3C020617.2' => 'cme', 'MELO3C020618.2' => 'cme', 'Migut.G00328' => 'egut', 'Migut.J00320' => 'egut', 'Migut.L01000' => 'egut', 'Migut.L01953' => 'egut', 'MSTRG.10253' => 'ama', 'MSTRG.19077' => 'ama', 'MSTRG.26780' => 'ama', 'MSTRG.4023' => 'ama', 'MSTRG.5655' => 'ama', 'MSTRG.9992' => 'ama', 'Nitab4.5_0000043g0310' => 'nta', 'Nitab4.5_0000463g0080' => 'nta', 'Nitab4.5_0000705g0170' => 'nta', 'Nitab4.5_0001326g0060' => 'nta', 'Nitab4.5_0001628g0030' => 'nta', 'Nitab4.5_0002103g0110' => 'nta', 'Nitab4.5_0002946g0030' => 'nta', 'Nitab4.5_0004639g0030' => 'nta', 'Nn2g11149' => 'nnu', 'Nn2g13389' => 'nnu', 'Nn4g25326' => 'nnu', 'Nn4g26290' => 'nnu', 'Nn5g29865' => 'nnu', 'Oeu004163.1' => 'oeu', 'Oeu006901.1' => 'oeu', 'Oeu010096.1' => 'oeu', 'Oeu024340.1' => 'oeu', 'Oeu048369.1' => 'oeu', 'Os01g0973000' => 'osa', 'Os03g0273800' => 'osa', 'Os03g0701200' => 'osa', 'Os03g0834050' => 'osa', 'Os07g0634400' => 'osa', 'Peaxi162Scf00092g01414' => 'pax', 'Peaxi162Scf00165g00818' => 'pax', 'Peaxi162Scf00309g00516' => 'pax', 'Peaxi162Scf00774g00218' => 'pax', 'PGR004G1824' => 'pgr', 'PGR004G2606' => 'pgr', 'PGR031G2716' => 'pgr', 'PGR102G2460' => 'pgr', 'PGR142G2599' => 'pgr', 'PGSC0003DMG400000843' => 'stu', 'PGSC0003DMG400008829' => 'stu', 'PGSC0003DMG400030418' => 'stu', 'PGSC0003DMG400031834' => 'stu', 'PGSC0003DMG401028300' => 'stu', 'PGSC0003DMG402028300' => 'stu', 'Phvul.001G219300' => 'pvu', 'Phvul.007G056000' => 'pvu', 'Phvul.007G208000' => 'pvu', 'Phvul.008G119500' => 'pvu', 'Phvul.010G011200' => 'pvu', 'Phvul.010G014800' => 'pvu', 'Phvul.011G062900' => 'pvu', 'Phvul.L007043' => 'pvu', 'Potri.001G242300' => 'ptr', 'Potri.002G185300' => 'ptr', 'Potri.006G086900' => 'ptr', 'Potri.008G151700' => 'ptr', 'Potri.009G033500' => 'ptr', 'Potri.010G089300' => 'ptr', 'Potri.014G110800' => 'ptr', 'Pp3c27_8130' => 'ppa', 'Pp3c6_27410' => 'ppa', 'PRCOL_00001659' => 'pco', 'PRCOL_00001927' => 'pco', 'PRCOL_00003649' => 'pco', 'Prupe.1G011600' => 'ppe', 'Prupe.3G000800' => 'ppe', 'Prupe.3G001100' => 'ppe', 'Prupe.6G072700' => 'ppe', 'Prupe.6G072800' => 'ppe', 'Prupe.6G257300' => 'ppe', 'Prupe.8G033000' => 'ppe', 'Psat0s2633g0080' => 'psa', 'Psat0s3396g0080' => 'psa', 'Psat0s3396g0200' => 'psa', 'Psat3g139080' => 'psa', 'Psat5g285080' => 'psa', 'Psat6g157760' => 'psa', 'Psat6g208440' => 'psa', 'Psat7g215320' => 'psa', 'Psat7g215400' => 'psa', 'Psat7g235600' => 'psa', 'Psat7g235760' => 'psa', 'PSO063G4603' => 'pso', 'PSO210G0182' => 'pso', 'PSO210G0196' => 'pso', 'PSO339G0394' => 'pso', 'PSO339G4127' => 'pso', 'PSO513G0064' => 'pso', 'PSO761G0079' => 'pso', 'QL01p031003' => 'qlo', 'QL01p031078' => 'qlo', 'QL06p003004' => 'qlo', 'QL07p048731' => 'qlo', 'QL09p037427' => 'qlo', 'RcHm_v2.0_Chr3g0466361' => 'rch', 'RcHm_v2.0_Chr3g0485571' => 'rch', 'RcHm_v2.0_Chr4g0416551' => 'rch', 'RcHm_v2.0_Chr5g0065831' => 'rch', 'Rhsim01G0230500' => 'rsi', 'Rhsim05G0194000' => 'rsi', 'Rhsim08G0250400' => 'rsi', 'Sabra02G0131000' => 'sbr', 'Sabra06G0066300' => 'sbr', 'Sabra08G0115500' => 'sbr', 'Sabra09G0023900' => 'sbr', 'Sabra10G0054000' => 'sbr', 'Sabra14G0081500' => 'sbr', 'Sabra16G0147100' => 'sbr', 'SalBow2G2957' => 'sbo', 'SalBow4G3320' => 'sbo', 'SalBow8G1894' => 'sbo', 'Sc07g0007950' => 'sci', 'Sc12g0001360' => 'sci', 'Sc13g0004330' => 'sci', 'Sc20g0005010' => 'sci', 'Sed0000361' => 'sed', 'Sed0001706' => 'sed', 'Sed0002422' => 'sed', 'Sed0004029' => 'sed', 'Sed0004602' => 'sed', 'Sed0004943' => 'sed', 'Sed0008646' => 'sed', 'Sed0023313' => 'sed', 'Sed0024843' => 'sed', 'SEGI_00081' => 'sgi', 'SEGI_00947' => 'sgi', 'SEGI_04046' => 'sgi', 'SEGI_06880' => 'sgi', 'SEGI_09736' => 'sgi', 'SEGI_12741' => 'sgi', 'SEGI_14530' => 'sgi', 'SEGI_20705' => 'sgi', 'SEGI_26088' => 'sgi', 'SEGI_28323' => 'sgi', 'SEGI_33343' => 'sgi', 'SGA_v2.0_scaffold126G33775' => 'sas', 'SGA_v2.0_scaffold2G01337' => 'sas', 'SGA_v2.0_scaffold38G15006' => 'sas', 'SGA_v2.0_scaffold39G15264' => 'sas', 'SGA_v2.0_scaffold453G51880' => 'sas', 'SHI12696' => 'shi', 'SMO367G1096' => 'smo', 'Solyc01g068630.3' => 'sly', 'Solyc05g011880.3' => 'sly', 'Solyc06g076300.3' => 'sly', 'Solyc09g010940.4' => 'sly', 'Solyc09g075890.3' => 'sly', 'Sopen01g030560' => 'spe', 'Sopen05g006630' => 'spe', 'Sopen06g032720' => 'spe', 'Sopen09g005660' => 'spe', 'Sopen09g030690' => 'spe', 'Sp4g14540' => 'spa', 'Sp4g20030' => 'spa', 'Sp5g01320' => 'spa', 'Sp6g21170' => 'spa', 'Sp6g21180' => 'spa', 'Sp6g21190' => 'spa', 'Sp6g40220' => 'spa', 'TAR362G0122' => 'tar', 'TAR362G1338' => 'tar', 'TAR369G0590' => 'tar', 'TAR371G0824' => 'tar', 'TAR622G1429' => 'tar', 'TAR623G0734' => 'tar', 'TAR625G0441' => 'tar', 'TAR629G0976' => 'tar', 'TAR633G1195' => 'tar', 'TAR636G2660' => 'tar', 'THA.LOC104799440' => 'tha', 'THA.LOC104800966' => 'tha', 'THA.LOC104806559' => 'tha', 'THA.LOC104810765' => 'tha', 'THA.LOC104816266' => 'tha', 'THA.LOC104817419' => 'tha', 'THA.LOC104827021' => 'tha', 'Thecc.01G327400' => 'tca', 'Thecc.04G229200' => 'tca', 'Thecc.05G037400' => 'tca', 'Thecc.09G318600' => 'tca', 'Thecc.09G318700' => 'tca', 'Thhalv10006238m.g' => 'esa', 'Thhalv10014321m.g' => 'esa', 'Thhalv10014335m.g' => 'esa', 'Thhalv10015826m.g' => 'esa', 'Thhalv10017107m.g' => 'esa', 'Thhalv10017180m.g' => 'esa', 'Thhalv10029339m.g' => 'esa', 'TPR.G1699' => 'tpr', 'TPR.G23609' => 'tpr', 'TPR.G3081' => 'tpr', 'TPR.G40397' => 'tpr', 'TPR.G5522' => 'tpr', 'TPR.G5618' => 'tpr', 'TPR.G5626' => 'tpr', 'TWI09G1632' => 'twi', 'TWI23G1230' => 'twi', 'TWI53G1064' => 'twi', 'TWI59G0751' => 'twi', 'TWI74G0947' => 'twi', 'TWI77G0337' => 'twi', 'TWI79G1254' => 'twi', 'unitig_0.g2341' => 'ugi', 'unitig_26.g10006' => 'ugi', 'unitig_26.g10008' => 'ugi', 'unitig_26.g9192' => 'ugi', 'vmacro14547' => 'vma', 'vmacro15333' => 'vma', 'vmacro18743' => 'vma', 'vmacro20166' => 'vma', 'VMungo0331G0523' => 'vmu', 'VMungo0331G1202' => 'vmu', 'VMungo0720G1228' => 'vmu', 'VMungo0720G1514' => 'vmu', 'VMungo1080G0169' => 'vmu', 'VMungo1127G1475' => 'vmu', 'VMungo1383G1208' => 'vmu', 'VMungo1383G1698' => 'vmu', 'Zm00001eb012270' => 'zma', 'Zm00001eb054100' => 'zma', 'Zm00001eb063350' => 'zma', 'Zm00001eb328560' => 'zma', 'Zm00001eb342820' => 'zma', 'Zm00001eb362210' => 'zma', 'Zm00001eb397730' => 'zma', 'Zm00001eb399750' => 'zma' ) $gf_id = 'HOM05D000959' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000959' ) $data_identifier = 'HOM05D000959' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 5, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 5, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 10, 'mbi' => (int) 3, 'mco' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 2, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 3, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 11, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399750' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000959', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '622', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p07100' => 'bna', 'A03p11720' => 'bna', 'A05p08300' => 'bna', 'A05p13380' => 'bna', 'A09p54130' => 'bna', 'A10p16690' => 'bna', 'A10p16700' => 'bna', 'A10p33390' => 'bna', 'Aa31LG10G16020' => 'aar', 'Aa31LG1G11810' => 'aar', 'Aa31LG1G11830' => 'aar', 'Aa31LG1G22510' => 'aar', 'Aa31LG5G4890' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5793' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2310' => 'aag', 'Actinidia08499' => 'ach', 'Actinidia11262' => 'ach', 'Actinidia23926' => 'ach', 'Actinidia34420' => 'ach', 'Actinidia36970' => 'ach', 'Ah.02g111220' => 'amhyb', 'Ah.15g097750' => 'amhyb', 'AL4G27500' => 'aly', 'AL6G11470' => 'aly', 'AL8G35950' => 'aly', 'AL8G35960' => 'aly', 'AL8G35970' => 'aly', 'Aqoxy1G00912' => 'aox', 'Aqoxy2G02253' => 'aox', 'Aqoxy2G02411' => 'aox', 'Aqoxy5G00485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BZ66YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K8ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM4FUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6BF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HFV7XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25JBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0YNNV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MAKK6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P70IT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP2Z6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V61LZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YWP64R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3S9AI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7PGHH' => 'arhy', 'AT2G32150' => 'ath', 'AT3G62040' => 'ath', 'AT5G02230' => 'ath', 'AT5G59480' => 'ath', 'AT5G59490' => 'ath', 'ATR0332G060' => 'atr', 'ATR0559G190' => 'atr', 'ATR0693G294' => 'atr', 'Atru.chr3.3975' => 'acertr', 'Atru.chr3.3976' => 'acertr', 'Atru.chr3.3977' => 'acertr', 'Atru.chr4.2498' => 'acertr', 'Atru.chr5.838' => 'acertr', 'Atru.chr8.1990' => 'acertr', 'Atru.chr8.1991' => 'acertr', 'Atru.chr8.1992' => 'acertr', 'AUR62001759' => 'cqu', 'AUR62009545' => 'cqu', 'AUR62010474' => 'cqu', 'AUR62025820' => 'cqu', 'AUR62030422' => 'cqu', 'AUR62033605' => 'cqu', 'AUR62038615' => 'cqu', 'AUR62041347' => 'cqu', 'BcaB01g04574' => 'bca', 'BcaB02g09263' => 'bca', 'BcaB02g10453' => 'bca', 'BcaB05g22513' => 'bca', 'BcaB08g36253' => 'bca', 'BcaB08g36254' => 'bca', 'BcaC01g06519' => 'bca', 'BcaC02g11889' => 'bca', 'BcaC03g14010' => 'bca', 'BcaC03g18439' => 'bca', 'BcaC04g19765' => 'bca', 'BcaC09g48432' => 'bca', 'BcaNung07302' => 'bca', 'BolC2t06040H' => 'bol', 'BolC2t07346H' => 'bol', 'BolC3t13817H' => 'bol', 'BolC4t22625H' => 'bol', 'BolC4t23297H' => 'bol', 'BolC8t51278H' => 'bol', 'BolC9t58050H' => 'bol', 'BolC9t58051H' => 'bol', 'BolC9t60163H' => 'bol', 'BraA02t04712Z' => 'bra', 'BraA02t05791Z' => 'bra', 'BraA03t10483Z' => 'bra', 'BraA05t19795Z' => 'bra', 'BraA05t20276Z' => 'bra', 'BraA09t40827Z' => 'bra', 'BraA10t43750Z' => 'bra', 'BraA10t43751Z' => 'bra', 'BraA10t45370Z' => 'bra', 'C02p00400' => 'bna', 'C02p12460' => 'bna', 'C03p13680' => 'bna', 'C04p10270' => 'bna', 'C04p17500' => 'bna', 'C08p37010' => 'bna', 'C09p51880' => 'bna', 'C09p51890' => 'bna', 'C09p74300' => 'bna', 'CAN.G179.26' => 'can', 'CAN.G3384.1' => 'can', 'CAN.G394.68' => 'can', 'CAN.G907.13' => 'can', 'CANSAT11G0012' => 'cansat', 'CANSAT25G1586' => 'cansat', 'CANSAT35G0735' => 'cansat', 'CANSAT54G0556' => 'cansat', 'CANSAT64G0356' => 'cansat', 'CANSAT78G2042' => 'cansat', 'CARHR125920' => 'chi', 'CARHR131910' => 'chi', 'CARHR172390' => 'chi', 'CARHR211140' => 'chi', 'CARHR285850' => 'chi', 'CARHR285860' => 'chi', 'Carub.0004s1347' => 'cru', 'Carub.0004s1960' => 'cru', 'Carub.0005s2880' => 'cru', 'Carub.0006s0107' => 'cru', 'Carub.0008s2015' => 'cru', 'Carub.0008s2016' => 'cru', 'Carub.0008s2017' => 'cru', 'Ca_01315_v3' => 'car', 'Ca_05063_v3' => 'car', 'Ca_10231_v3' => 'car', 'Ca_10913_v3' => 'car', 'Ca_19156_v3' => 'car', 'Ca_23644_v3' => 'car', 'Ca_26735_v3' => 'car', 'Cc01_g13130' => 'ccan', 'Cc02_g21690' => 'ccan', 'Cc03_g03600' => 'ccan', 'Cc06_g02510' => 'ccan', 'CDE02G1265' => 'cde', 'CDE05G0415' => 'cde', 'CDE08G1082' => 'cde', 'Cfa005780' => 'cfa', 'Cfa011522' => 'cfa', 'Cfa011523' => 'cfa', 'Cfa015627' => 'cfa', 'Cfa017359' => 'cfa', 'Ciclev10005687m.g' => 'ccl', 'Ciclev10012173m.g' => 'ccl', 'Ciclev10021621m.g' => 'ccl', 'Ciclev10028968m.g' => 'ccl', 'Ciclev10029907m.g' => 'ccl', 'CiPaw.01G164800' => 'cil', 'CiPaw.07G083700' => 'cil', 'CiPaw.07G127000' => 'cil', 'CiPaw.07G136900' => 'cil', 'CiPaw.08G081700' => 'cil', 'CiPaw.09G194600' => 'cil', 'CiPaw.10G146500' => 'cil', 'CiPaw.13G091500' => 'cil', 'CiPaw.13G091600' => 'cil', 'ClCG00G003390' => 'cla', 'ClCG01G007220' => 'cla', 'ClCG03G001370' => 'cla', 'ClCG04G008100' => 'cla', 'ClCG06G006110' => 'cla', 'ClCG06G006130' => 'cla', 'ClCG10G021210' => 'cla', 'COL.COLO4_07648' => 'col', 'COL.COLO4_07650' => 'col', 'COL.COLO4_07651' => 'col', 'COL.COLO4_14780' => 'col', 'COL.COLO4_18546' => 'col', 'COL.COLO4_18547' => 'col', 'COL.COLO4_23103' => 'col', 'COL.COLO4_30419' => 'col', 'COL.COLO4_34232' => 'col', 'Cpa.g.sc169.20' => 'cpa', 'Cpa.g.sc57.45' => 'cpa', 'Cpa.g.sc58.124' => 'cpa', 'Cpa.g.sc58.125' => 'cpa', 'Cpa.g.sc81.118' => 'cpa', 'Cpa.g.sc81.119' => 'cpa', 'Cre12.g524700' => 'cre', 'CsaV3_1G034430' => 'csa', 'CsaV3_1G034440' => 'csa', 'CsaV3_1G034450' => 'csa', 'CsaV3_3G034830' => 'csa', 'CsaV3_4G025090' => 'csa', 'CsaV3_5G018660' => 'csa', 'CsaV3_6G038160' => 'csa', 'CSS0003447' => 'camsi', 'CSS0017840' => 'camsi', 'CSS0019260' => 'camsi', 'CSS0040375' => 'camsi', 'CSS0042533' => 'camsi', 'DCAR_005960' => 'dca', 'DCAR_012104' => 'dca', 'DCAR_012105' => 'dca', 'DCAR_012293' => 'dca', 'DCAR_015632' => 'dca', 'DCAR_024602' => 'dca', 'DCAR_028752' => 'dca', 'Dinv06261' => 'din', 'Dinv13982' => 'din', 'Dinv17029' => 'din', 'Dinv18463' => 'din', 'Dinv33181' => 'din', 'Dinv35585' => 'din', 'Dinv37161' => 'din', 'Dinv42977' => 'din', 'Dinv43122' => 'din', 'Dinv44517' => 'din', 'Duzib093G0256' => 'dzi', 'Duzib106G1254' => 'dzi', 'Duzib128G1789' => 'dzi', 'Duzib133G0633' => 'dzi', 'Duzib138G0510' => 'dzi', 'Duzib150G1084' => 'dzi', 'Duzib168G0488' => 'dzi', 'Duzib168G1523' => 'dzi', 'Duzib170G0133' => 'dzi', 'ECA234G1433' => 'eca', 'ECA236G1432' => 'eca', 'ECA236G2256' => 'eca', 'ECA236G2365' => 'eca', 'ECA236G4830' => 'eca', 'ECA248G1505' => 'eca', 'EL10Ac3g06431' => 'bvu', 'EL10Ac5g12577' => 'bvu', 'EL10Ac6g13533' => 'bvu', 'EL10Ac7g16045' => 'bvu', 'Eucgr.A01281' => 'egr', 'Eucgr.B02326' => 'egr', 'Eucgr.H03532' => 'egr', 'Eucgr.K00553' => 'egr', 'Eucgr.K03116' => 'egr', 'FAN02G3963' => 'fan', 'FAN05G0438' => 'fan', 'FAN09G2434' => 'fan', 'FAN12G3984' => 'fan', 'FAN14G0798' => 'fan', 'FAN17G0652' => 'fan', 'FAN19G1988' => 'fan', 'FAN22G0632' => 'fan', 'FAN23G0387' => 'fan', 'FAN26G1323' => 'fan', 'FAN28G0666' => 'fan', 'FvH4_1g26080' => 'fve', 'FvH4_3g36780' => 'fve', 'FvH4_4g15270' => 'fve', 'FvH4_6g13490' => 'fve', 'Glyma.01G098700' => 'gma', 'Glyma.03G065900' => 'gma', 'Glyma.03G073754' => 'gma', 'Glyma.03G073758' => 'gma', 'Glyma.03G083200' => 'gma', 'Glyma.03G225500' => 'gma', 'Glyma.05G037766' => 'gma', 'Glyma.07G133500' => 'gma', 'Glyma.10G139400' => 'gma', 'Glyma.10G248900' => 'gma', 'Glyma.11G137800' => 'gma', 'Glyma.12G061300' => 'gma', 'Glyma.13G337900' => 'gma', 'Glyma.15G036600' => 'gma', 'Glyma.18G182800' => 'gma', 'Glyma.19G222500' => 'gma', 'Glyma.20G144800' => 'gma', 'Gohir.A01G222000' => 'ghi', 'Gohir.A03G044000' => 'ghi', 'Gohir.A03G044100' => 'ghi', 'Gohir.A04G083100' => 'ghi', 'Gohir.A07G127200' => 'ghi', 'Gohir.A07G132400' => 'ghi', 'Gohir.A08G000700' => 'ghi', 'Gohir.A11G327300' => 'ghi', 'Gohir.D01G211500' => 'ghi', 'Gohir.D03G123400' => 'ghi', 'Gohir.D03G123500' => 'ghi', 'Gohir.D04G121800' => 'ghi', 'Gohir.D07G131500' => 'ghi', 'Gohir.D07G136600' => 'ghi', 'Gohir.D08G011600' => 'ghi', 'Gohir.D11G346200' => 'ghi', 'Gorai.001G142800' => 'gra', 'Gorai.001G148700' => 'gra', 'Gorai.002G257300' => 'gra', 'Gorai.003G130000' => 'gra', 'Gorai.003G130100' => 'gra', 'Gorai.004G005300' => 'gra', 'Gorai.007G376500' => 'gra', 'Gorai.012G104700' => 'gra', 'GSVIVG01017946001' => 'vvi', 'GSVIVG01024928001' => 'vvi', 'GSVIVG01028227001' => 'vvi', 'GSVIVG01034151001' => 'vvi', 'HanXRQChr05g0135031' => 'han', 'HanXRQChr05g0135041' => 'han', 'HanXRQChr05g0140021' => 'han', 'HanXRQChr06g0178981' => 'han', 'HanXRQChr07g0188251' => 'han', 'HanXRQChr08g0235311' => 'han', 'HanXRQChr09g0271011' => 'han', 'HanXRQChr10g0293321' => 'han', 'HanXRQChr13g0388171' => 'han', 'Haze_00916' => 'cav', 'Haze_05063' => 'cav', 'Haze_20814' => 'cav', 'Haze_24128' => 'cav', 'Hma1.2p1_0745F.1_g212010' => 'hma', 'Hma1.2p1_0757F.1_g213260' => 'hma', 'Hma1.2p1_0936F.1_g238840' => 'hma', 'Hma1.2p1_1735F.1_g299890' => 'hma', 'Hma1.2p1_1861F.1_g305685' => 'hma', 'HPP92_003397' => 'vpl', 'HPP92_012597' => 'vpl', 'HPP92_015520' => 'vpl', 'HPP92_015539' => 'vpl', 'HPP92_020373' => 'vpl', 'Hund04938' => 'sun', 'Hund10677' => 'sun', 'Hund11033' => 'sun', 'Hund12155' => 'sun', 'Lalb_Chr01g0022551' => 'lal', 'Lalb_Chr03g0042341' => 'lal', 'Lalb_Chr07g0192931' => 'lal', 'Lalb_Chr12g0209551' => 'lal', 'Lalb_Chr19g0125251' => 'lal', 'Lalb_Chr19g0137891' => 'lal', 'Lalb_Chr21g0304641' => 'lal', 'Lalb_Chr21g0309881' => 'lal', 'Lj1A5T12' => 'lonja', 'Lj1C148G10' => 'lonja', 'Lj2A93T83' => 'lonja', 'Lj3A738G68' => 'lonja', 'Lj3C966T1' => 'lonja', 'Lj3g0018958' => 'lja', 'Lj3g0021831' => 'lja', 'Lj3g0025443' => 'lja', 'Lj4g0026809' => 'lja', 'Lj5g0012558' => 'lja', 'Lj5g0021586' => 'lja', 'Lsat_1_v5_gn_5_156840' => 'lsa', 'Lsat_1_v5_gn_8_73460' => 'lsa', 'Lsat_1_v5_gn_8_73481' => 'lsa', 'Lsat_1_v5_gn_9_31601' => 'lsa', 'Lsat_1_v5_gn_9_77320' => 'lsa', 'Manes.01G171300' => 'mes', 'Manes.01G171400' => 'mes', 'Manes.01G236100' => 'mes', 'Manes.02G130500' => 'mes', 'Manes.02G130600' => 'mes', 'Manes.03G180200' => 'mes', 'Manes.05G007000' => 'mes', 'Manes.08G084400' => 'mes', 'Manes.09G092600' => 'mes', 'Manes.15G027900' => 'mes', 'MBI04_g40948_MAGBIO' => 'mbi', 'MBI14_g12123_MAGBIO' => 'mbi', 'MBI18_g28915_MAGBIO' => 'mbi', 'MCO09G053' => 'mco', 'MCO11G782' => 'mco', 'MCO15G215' => 'mco', 'MD03G1088500' => 'mdo', 'MD03G1088600' => 'mdo', 'MD04G1130800' => 'mdo', 'MD09G1291700' => 'mdo', 'MD11G1097500' => 'mdo', 'MD11G1097600' => 'mdo', 'MD12G1143900' => 'mdo', 'MD13G1191400' => 'mdo', 'MD16G1191500' => 'mdo', 'Medtr1g085570' => 'mtr', 'Medtr1g104610' => 'mtr', 'Medtr2g097520' => 'mtr', 'Medtr4g021800' => 'mtr', 'Medtr4g021825' => 'mtr', 'Medtr4g064270' => 'mtr', 'Medtr4g064380' => 'mtr', 'Medtr7g062150' => 'mtr', 'MELO3C003138.2' => 'cme', 'MELO3C005187.2' => 'cme', 'MELO3C009252.2' => 'cme', 'MELO3C014481.2' => 'cme', 'MELO3C020616.2' => 'cme', 'MELO3C020617.2' => 'cme', 'MELO3C020618.2' => 'cme', 'Migut.G00328' => 'egut', 'Migut.J00320' => 'egut', 'Migut.L01000' => 'egut', 'Migut.L01953' => 'egut', 'MSTRG.10253' => 'ama', 'MSTRG.19077' => 'ama', 'MSTRG.26780' => 'ama', 'MSTRG.4023' => 'ama', 'MSTRG.5655' => 'ama', 'MSTRG.9992' => 'ama', 'Nitab4.5_0000043g0310' => 'nta', 'Nitab4.5_0000463g0080' => 'nta', 'Nitab4.5_0000705g0170' => 'nta', 'Nitab4.5_0001326g0060' => 'nta', 'Nitab4.5_0001628g0030' => 'nta', 'Nitab4.5_0002103g0110' => 'nta', 'Nitab4.5_0002946g0030' => 'nta', 'Nitab4.5_0004639g0030' => 'nta', 'Nn2g11149' => 'nnu', 'Nn2g13389' => 'nnu', 'Nn4g25326' => 'nnu', 'Nn4g26290' => 'nnu', 'Nn5g29865' => 'nnu', 'Oeu004163.1' => 'oeu', 'Oeu006901.1' => 'oeu', 'Oeu010096.1' => 'oeu', 'Oeu024340.1' => 'oeu', 'Oeu048369.1' => 'oeu', 'Os01g0973000' => 'osa', 'Os03g0273800' => 'osa', 'Os03g0701200' => 'osa', 'Os03g0834050' => 'osa', 'Os07g0634400' => 'osa', 'Peaxi162Scf00092g01414' => 'pax', 'Peaxi162Scf00165g00818' => 'pax', 'Peaxi162Scf00309g00516' => 'pax', 'Peaxi162Scf00774g00218' => 'pax', 'PGR004G1824' => 'pgr', 'PGR004G2606' => 'pgr', 'PGR031G2716' => 'pgr', 'PGR102G2460' => 'pgr', 'PGR142G2599' => 'pgr', 'PGSC0003DMG400000843' => 'stu', 'PGSC0003DMG400008829' => 'stu', 'PGSC0003DMG400030418' => 'stu', 'PGSC0003DMG400031834' => 'stu', 'PGSC0003DMG401028300' => 'stu', 'PGSC0003DMG402028300' => 'stu', 'Phvul.001G219300' => 'pvu', 'Phvul.007G056000' => 'pvu', 'Phvul.007G208000' => 'pvu', 'Phvul.008G119500' => 'pvu', 'Phvul.010G011200' => 'pvu', 'Phvul.010G014800' => 'pvu', 'Phvul.011G062900' => 'pvu', 'Phvul.L007043' => 'pvu', 'Potri.001G242300' => 'ptr', 'Potri.002G185300' => 'ptr', 'Potri.006G086900' => 'ptr', 'Potri.008G151700' => 'ptr', 'Potri.009G033500' => 'ptr', 'Potri.010G089300' => 'ptr', 'Potri.014G110800' => 'ptr', 'Pp3c27_8130' => 'ppa', 'Pp3c6_27410' => 'ppa', 'PRCOL_00001659' => 'pco', 'PRCOL_00001927' => 'pco', 'PRCOL_00003649' => 'pco', 'Prupe.1G011600' => 'ppe', 'Prupe.3G000800' => 'ppe', 'Prupe.3G001100' => 'ppe', 'Prupe.6G072700' => 'ppe', 'Prupe.6G072800' => 'ppe', 'Prupe.6G257300' => 'ppe', 'Prupe.8G033000' => 'ppe', 'Psat0s2633g0080' => 'psa', 'Psat0s3396g0080' => 'psa', 'Psat0s3396g0200' => 'psa', 'Psat3g139080' => 'psa', 'Psat5g285080' => 'psa', 'Psat6g157760' => 'psa', 'Psat6g208440' => 'psa', 'Psat7g215320' => 'psa', 'Psat7g215400' => 'psa', 'Psat7g235600' => 'psa', 'Psat7g235760' => 'psa', 'PSO063G4603' => 'pso', 'PSO210G0182' => 'pso', 'PSO210G0196' => 'pso', 'PSO339G0394' => 'pso', 'PSO339G4127' => 'pso', 'PSO513G0064' => 'pso', 'PSO761G0079' => 'pso', 'QL01p031003' => 'qlo', 'QL01p031078' => 'qlo', 'QL06p003004' => 'qlo', 'QL07p048731' => 'qlo', 'QL09p037427' => 'qlo', 'RcHm_v2.0_Chr3g0466361' => 'rch', 'RcHm_v2.0_Chr3g0485571' => 'rch', 'RcHm_v2.0_Chr4g0416551' => 'rch', 'RcHm_v2.0_Chr5g0065831' => 'rch', 'Rhsim01G0230500' => 'rsi', 'Rhsim05G0194000' => 'rsi', 'Rhsim08G0250400' => 'rsi', 'Sabra02G0131000' => 'sbr', 'Sabra06G0066300' => 'sbr', 'Sabra08G0115500' => 'sbr', 'Sabra09G0023900' => 'sbr', 'Sabra10G0054000' => 'sbr', 'Sabra14G0081500' => 'sbr', 'Sabra16G0147100' => 'sbr', 'SalBow2G2957' => 'sbo', 'SalBow4G3320' => 'sbo', 'SalBow8G1894' => 'sbo', 'Sc07g0007950' => 'sci', 'Sc12g0001360' => 'sci', 'Sc13g0004330' => 'sci', 'Sc20g0005010' => 'sci', 'Sed0000361' => 'sed', 'Sed0001706' => 'sed', 'Sed0002422' => 'sed', 'Sed0004029' => 'sed', 'Sed0004602' => 'sed', 'Sed0004943' => 'sed', 'Sed0008646' => 'sed', 'Sed0023313' => 'sed', 'Sed0024843' => 'sed', 'SEGI_00081' => 'sgi', 'SEGI_00947' => 'sgi', 'SEGI_04046' => 'sgi', 'SEGI_06880' => 'sgi', 'SEGI_09736' => 'sgi', 'SEGI_12741' => 'sgi', 'SEGI_14530' => 'sgi', 'SEGI_20705' => 'sgi', 'SEGI_26088' => 'sgi', 'SEGI_28323' => 'sgi', 'SEGI_33343' => 'sgi', 'SGA_v2.0_scaffold126G33775' => 'sas', 'SGA_v2.0_scaffold2G01337' => 'sas', 'SGA_v2.0_scaffold38G15006' => 'sas', 'SGA_v2.0_scaffold39G15264' => 'sas', 'SGA_v2.0_scaffold453G51880' => 'sas', 'SHI12696' => 'shi', 'SMO367G1096' => 'smo', 'Solyc01g068630.3' => 'sly', 'Solyc05g011880.3' => 'sly', 'Solyc06g076300.3' => 'sly', 'Solyc09g010940.4' => 'sly', 'Solyc09g075890.3' => 'sly', 'Sopen01g030560' => 'spe', 'Sopen05g006630' => 'spe', 'Sopen06g032720' => 'spe', 'Sopen09g005660' => 'spe', 'Sopen09g030690' => 'spe', 'Sp4g14540' => 'spa', 'Sp4g20030' => 'spa', 'Sp5g01320' => 'spa', 'Sp6g21170' => 'spa', 'Sp6g21180' => 'spa', 'Sp6g21190' => 'spa', 'Sp6g40220' => 'spa', 'TAR362G0122' => 'tar', 'TAR362G1338' => 'tar', 'TAR369G0590' => 'tar', 'TAR371G0824' => 'tar', 'TAR622G1429' => 'tar', 'TAR623G0734' => 'tar', 'TAR625G0441' => 'tar', 'TAR629G0976' => 'tar', 'TAR633G1195' => 'tar', 'TAR636G2660' => 'tar', 'THA.LOC104799440' => 'tha', 'THA.LOC104800966' => 'tha', 'THA.LOC104806559' => 'tha', 'THA.LOC104810765' => 'tha', 'THA.LOC104816266' => 'tha', 'THA.LOC104817419' => 'tha', 'THA.LOC104827021' => 'tha', 'Thecc.01G327400' => 'tca', 'Thecc.04G229200' => 'tca', 'Thecc.05G037400' => 'tca', 'Thecc.09G318600' => 'tca', 'Thecc.09G318700' => 'tca', 'Thhalv10006238m.g' => 'esa', 'Thhalv10014321m.g' => 'esa', 'Thhalv10014335m.g' => 'esa', 'Thhalv10015826m.g' => 'esa', 'Thhalv10017107m.g' => 'esa', 'Thhalv10017180m.g' => 'esa', 'Thhalv10029339m.g' => 'esa', 'TPR.G1699' => 'tpr', 'TPR.G23609' => 'tpr', 'TPR.G3081' => 'tpr', 'TPR.G40397' => 'tpr', 'TPR.G5522' => 'tpr', 'TPR.G5618' => 'tpr', 'TPR.G5626' => 'tpr', 'TWI09G1632' => 'twi', 'TWI23G1230' => 'twi', 'TWI53G1064' => 'twi', 'TWI59G0751' => 'twi', 'TWI74G0947' => 'twi', 'TWI77G0337' => 'twi', 'TWI79G1254' => 'twi', 'unitig_0.g2341' => 'ugi', 'unitig_26.g10006' => 'ugi', 'unitig_26.g10008' => 'ugi', 'unitig_26.g9192' => 'ugi', 'vmacro14547' => 'vma', 'vmacro15333' => 'vma', 'vmacro18743' => 'vma', 'vmacro20166' => 'vma', 'VMungo0331G0523' => 'vmu', 'VMungo0331G1202' => 'vmu', 'VMungo0720G1228' => 'vmu', 'VMungo0720G1514' => 'vmu', 'VMungo1080G0169' => 'vmu', 'VMungo1127G1475' => 'vmu', 'VMungo1383G1208' => 'vmu', 'VMungo1383G1698' => 'vmu', 'Zm00001eb012270' => 'zma', 'Zm00001eb054100' => 'zma', 'Zm00001eb063350' => 'zma', 'Zm00001eb328560' => 'zma', 'Zm00001eb342820' => 'zma', 'Zm00001eb362210' => 'zma', 'Zm00001eb397730' => 'zma', 'Zm00001eb399750' => 'zma' ), 'gf_id' => 'HOM05D000959', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000959' ), 'data_identifier' => 'HOM05D000959', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000959', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '622', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p07100' => 'bna', 'A03p11720' => 'bna', 'A05p08300' => 'bna', 'A05p13380' => 'bna', 'A09p54130' => 'bna', 'A10p16690' => 'bna', 'A10p16700' => 'bna', 'A10p33390' => 'bna', 'Aa31LG10G16020' => 'aar', 'Aa31LG1G11810' => 'aar', 'Aa31LG1G11830' => 'aar', 'Aa31LG1G22510' => 'aar', 'Aa31LG5G4890' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5793' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2310' => 'aag', 'Actinidia08499' => 'ach', 'Actinidia11262' => 'ach', 'Actinidia23926' => 'ach', 'Actinidia34420' => 'ach', 'Actinidia36970' => 'ach', 'Ah.02g111220' => 'amhyb', 'Ah.15g097750' => 'amhyb', 'AL4G27500' => 'aly', 'AL6G11470' => 'aly', 'AL8G35950' => 'aly', 'AL8G35960' => 'aly', 'AL8G35970' => 'aly', 'Aqoxy1G00912' => 'aox', 'Aqoxy2G02253' => 'aox', 'Aqoxy2G02411' => 'aox', 'Aqoxy5G00485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BZ66YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K8ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM4FUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6BF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HFV7XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25JBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0YNNV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MAKK6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P70IT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP2Z6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V61LZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YWP64R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3S9AI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7PGHH' => 'arhy', 'AT2G32150' => 'ath', 'AT3G62040' => 'ath', 'AT5G02230' => 'ath', 'AT5G59480' => 'ath', 'AT5G59490' => 'ath', 'ATR0332G060' => 'atr', 'ATR0559G190' => 'atr', 'ATR0693G294' => 'atr', 'Atru.chr3.3975' => 'acertr', 'Atru.chr3.3976' => 'acertr', 'Atru.chr3.3977' => 'acertr', 'Atru.chr4.2498' => 'acertr', 'Atru.chr5.838' => 'acertr', 'Atru.chr8.1990' => 'acertr', 'Atru.chr8.1991' => 'acertr', 'Atru.chr8.1992' => 'acertr', 'AUR62001759' => 'cqu', 'AUR62009545' => 'cqu', 'AUR62010474' => 'cqu', 'AUR62025820' => 'cqu', 'AUR62030422' => 'cqu', 'AUR62033605' => 'cqu', 'AUR62038615' => 'cqu', 'AUR62041347' => 'cqu', 'BcaB01g04574' => 'bca', 'BcaB02g09263' => 'bca', 'BcaB02g10453' => 'bca', 'BcaB05g22513' => 'bca', 'BcaB08g36253' => 'bca', 'BcaB08g36254' => 'bca', 'BcaC01g06519' => 'bca', 'BcaC02g11889' => 'bca', 'BcaC03g14010' => 'bca', 'BcaC03g18439' => 'bca', 'BcaC04g19765' => 'bca', 'BcaC09g48432' => 'bca', 'BcaNung07302' => 'bca', 'BolC2t06040H' => 'bol', 'BolC2t07346H' => 'bol', 'BolC3t13817H' => 'bol', 'BolC4t22625H' => 'bol', 'BolC4t23297H' => 'bol', 'BolC8t51278H' => 'bol', 'BolC9t58050H' => 'bol', 'BolC9t58051H' => 'bol', 'BolC9t60163H' => 'bol', 'BraA02t04712Z' => 'bra', 'BraA02t05791Z' => 'bra', 'BraA03t10483Z' => 'bra', 'BraA05t19795Z' => 'bra', 'BraA05t20276Z' => 'bra', 'BraA09t40827Z' => 'bra', 'BraA10t43750Z' => 'bra', 'BraA10t43751Z' => 'bra', 'BraA10t45370Z' => 'bra', 'C02p00400' => 'bna', 'C02p12460' => 'bna', 'C03p13680' => 'bna', 'C04p10270' => 'bna', 'C04p17500' => 'bna', 'C08p37010' => 'bna', 'C09p51880' => 'bna', 'C09p51890' => 'bna', 'C09p74300' => 'bna', 'CAN.G179.26' => 'can', 'CAN.G3384.1' => 'can', 'CAN.G394.68' => 'can', 'CAN.G907.13' => 'can', 'CANSAT11G0012' => 'cansat', 'CANSAT25G1586' => 'cansat', 'CANSAT35G0735' => 'cansat', 'CANSAT54G0556' => 'cansat', 'CANSAT64G0356' => 'cansat', 'CANSAT78G2042' => 'cansat', 'CARHR125920' => 'chi', 'CARHR131910' => 'chi', 'CARHR172390' => 'chi', 'CARHR211140' => 'chi', 'CARHR285850' => 'chi', 'CARHR285860' => 'chi', 'Carub.0004s1347' => 'cru', 'Carub.0004s1960' => 'cru', 'Carub.0005s2880' => 'cru', 'Carub.0006s0107' => 'cru', 'Carub.0008s2015' => 'cru', 'Carub.0008s2016' => 'cru', 'Carub.0008s2017' => 'cru', 'Ca_01315_v3' => 'car', 'Ca_05063_v3' => 'car', 'Ca_10231_v3' => 'car', 'Ca_10913_v3' => 'car', 'Ca_19156_v3' => 'car', 'Ca_23644_v3' => 'car', 'Ca_26735_v3' => 'car', 'Cc01_g13130' => 'ccan', 'Cc02_g21690' => 'ccan', 'Cc03_g03600' => 'ccan', 'Cc06_g02510' => 'ccan', 'CDE02G1265' => 'cde', 'CDE05G0415' => 'cde', 'CDE08G1082' => 'cde', 'Cfa005780' => 'cfa', 'Cfa011522' => 'cfa', 'Cfa011523' => 'cfa', 'Cfa015627' => 'cfa', 'Cfa017359' => 'cfa', 'Ciclev10005687m.g' => 'ccl', 'Ciclev10012173m.g' => 'ccl', 'Ciclev10021621m.g' => 'ccl', 'Ciclev10028968m.g' => 'ccl', 'Ciclev10029907m.g' => 'ccl', 'CiPaw.01G164800' => 'cil', 'CiPaw.07G083700' => 'cil', 'CiPaw.07G127000' => 'cil', 'CiPaw.07G136900' => 'cil', 'CiPaw.08G081700' => 'cil', 'CiPaw.09G194600' => 'cil', 'CiPaw.10G146500' => 'cil', 'CiPaw.13G091500' => 'cil', 'CiPaw.13G091600' => 'cil', 'ClCG00G003390' => 'cla', 'ClCG01G007220' => 'cla', 'ClCG03G001370' => 'cla', 'ClCG04G008100' => 'cla', 'ClCG06G006110' => 'cla', 'ClCG06G006130' => 'cla', 'ClCG10G021210' => 'cla', 'COL.COLO4_07648' => 'col', 'COL.COLO4_07650' => 'col', 'COL.COLO4_07651' => 'col', 'COL.COLO4_14780' => 'col', 'COL.COLO4_18546' => 'col', 'COL.COLO4_18547' => 'col', 'COL.COLO4_23103' => 'col', 'COL.COLO4_30419' => 'col', 'COL.COLO4_34232' => 'col', 'Cpa.g.sc169.20' => 'cpa', 'Cpa.g.sc57.45' => 'cpa', 'Cpa.g.sc58.124' => 'cpa', 'Cpa.g.sc58.125' => 'cpa', 'Cpa.g.sc81.118' => 'cpa', 'Cpa.g.sc81.119' => 'cpa', 'Cre12.g524700' => 'cre', 'CsaV3_1G034430' => 'csa', 'CsaV3_1G034440' => 'csa', 'CsaV3_1G034450' => 'csa', 'CsaV3_3G034830' => 'csa', 'CsaV3_4G025090' => 'csa', 'CsaV3_5G018660' => 'csa', 'CsaV3_6G038160' => 'csa', 'CSS0003447' => 'camsi', 'CSS0017840' => 'camsi', 'CSS0019260' => 'camsi', 'CSS0040375' => 'camsi', 'CSS0042533' => 'camsi', 'DCAR_005960' => 'dca', 'DCAR_012104' => 'dca', 'DCAR_012105' => 'dca', 'DCAR_012293' => 'dca', 'DCAR_015632' => 'dca', 'DCAR_024602' => 'dca', 'DCAR_028752' => 'dca', 'Dinv06261' => 'din', 'Dinv13982' => 'din', 'Dinv17029' => 'din', 'Dinv18463' => 'din', 'Dinv33181' => 'din', 'Dinv35585' => 'din', 'Dinv37161' => 'din', 'Dinv42977' => 'din', 'Dinv43122' => 'din', 'Dinv44517' => 'din', 'Duzib093G0256' => 'dzi', 'Duzib106G1254' => 'dzi', 'Duzib128G1789' => 'dzi', 'Duzib133G0633' => 'dzi', 'Duzib138G0510' => 'dzi', 'Duzib150G1084' => 'dzi', 'Duzib168G0488' => 'dzi', 'Duzib168G1523' => 'dzi', 'Duzib170G0133' => 'dzi', 'ECA234G1433' => 'eca', 'ECA236G1432' => 'eca', 'ECA236G2256' => 'eca', 'ECA236G2365' => 'eca', 'ECA236G4830' => 'eca', 'ECA248G1505' => 'eca', 'EL10Ac3g06431' => 'bvu', 'EL10Ac5g12577' => 'bvu', 'EL10Ac6g13533' => 'bvu', 'EL10Ac7g16045' => 'bvu', 'Eucgr.A01281' => 'egr', 'Eucgr.B02326' => 'egr', 'Eucgr.H03532' => 'egr', 'Eucgr.K00553' => 'egr', 'Eucgr.K03116' => 'egr', 'FAN02G3963' => 'fan', 'FAN05G0438' => 'fan', 'FAN09G2434' => 'fan', 'FAN12G3984' => 'fan', 'FAN14G0798' => 'fan', 'FAN17G0652' => 'fan', 'FAN19G1988' => 'fan', 'FAN22G0632' => 'fan', 'FAN23G0387' => 'fan', 'FAN26G1323' => 'fan', 'FAN28G0666' => 'fan', 'FvH4_1g26080' => 'fve', 'FvH4_3g36780' => 'fve', 'FvH4_4g15270' => 'fve', 'FvH4_6g13490' => 'fve', 'Glyma.01G098700' => 'gma', 'Glyma.03G065900' => 'gma', 'Glyma.03G073754' => 'gma', 'Glyma.03G073758' => 'gma', 'Glyma.03G083200' => 'gma', 'Glyma.03G225500' => 'gma', 'Glyma.05G037766' => 'gma', 'Glyma.07G133500' => 'gma', 'Glyma.10G139400' => 'gma', 'Glyma.10G248900' => 'gma', 'Glyma.11G137800' => 'gma', 'Glyma.12G061300' => 'gma', 'Glyma.13G337900' => 'gma', 'Glyma.15G036600' => 'gma', 'Glyma.18G182800' => 'gma', 'Glyma.19G222500' => 'gma', 'Glyma.20G144800' => 'gma', 'Gohir.A01G222000' => 'ghi', 'Gohir.A03G044000' => 'ghi', 'Gohir.A03G044100' => 'ghi', 'Gohir.A04G083100' => 'ghi', 'Gohir.A07G127200' => 'ghi', 'Gohir.A07G132400' => 'ghi', 'Gohir.A08G000700' => 'ghi', 'Gohir.A11G327300' => 'ghi', 'Gohir.D01G211500' => 'ghi', 'Gohir.D03G123400' => 'ghi', 'Gohir.D03G123500' => 'ghi', 'Gohir.D04G121800' => 'ghi', 'Gohir.D07G131500' => 'ghi', 'Gohir.D07G136600' => 'ghi', 'Gohir.D08G011600' => 'ghi', 'Gohir.D11G346200' => 'ghi', 'Gorai.001G142800' => 'gra', 'Gorai.001G148700' => 'gra', 'Gorai.002G257300' => 'gra', 'Gorai.003G130000' => 'gra', 'Gorai.003G130100' => 'gra', 'Gorai.004G005300' => 'gra', 'Gorai.007G376500' => 'gra', 'Gorai.012G104700' => 'gra', 'GSVIVG01017946001' => 'vvi', 'GSVIVG01024928001' => 'vvi', 'GSVIVG01028227001' => 'vvi', 'GSVIVG01034151001' => 'vvi', 'HanXRQChr05g0135031' => 'han', 'HanXRQChr05g0135041' => 'han', 'HanXRQChr05g0140021' => 'han', 'HanXRQChr06g0178981' => 'han', 'HanXRQChr07g0188251' => 'han', 'HanXRQChr08g0235311' => 'han', 'HanXRQChr09g0271011' => 'han', 'HanXRQChr10g0293321' => 'han', 'HanXRQChr13g0388171' => 'han', 'Haze_00916' => 'cav', 'Haze_05063' => 'cav', 'Haze_20814' => 'cav', 'Haze_24128' => 'cav', 'Hma1.2p1_0745F.1_g212010' => 'hma', 'Hma1.2p1_0757F.1_g213260' => 'hma', 'Hma1.2p1_0936F.1_g238840' => 'hma', 'Hma1.2p1_1735F.1_g299890' => 'hma', 'Hma1.2p1_1861F.1_g305685' => 'hma', 'HPP92_003397' => 'vpl', 'HPP92_012597' => 'vpl', 'HPP92_015520' => 'vpl', 'HPP92_015539' => 'vpl', 'HPP92_020373' => 'vpl', 'Hund04938' => 'sun', 'Hund10677' => 'sun', 'Hund11033' => 'sun', 'Hund12155' => 'sun', 'Lalb_Chr01g0022551' => 'lal', 'Lalb_Chr03g0042341' => 'lal', 'Lalb_Chr07g0192931' => 'lal', 'Lalb_Chr12g0209551' => 'lal', 'Lalb_Chr19g0125251' => 'lal', 'Lalb_Chr19g0137891' => 'lal', 'Lalb_Chr21g0304641' => 'lal', 'Lalb_Chr21g0309881' => 'lal', 'Lj1A5T12' => 'lonja', 'Lj1C148G10' => 'lonja', 'Lj2A93T83' => 'lonja', 'Lj3A738G68' => 'lonja', 'Lj3C966T1' => 'lonja', 'Lj3g0018958' => 'lja', 'Lj3g0021831' => 'lja', 'Lj3g0025443' => 'lja', 'Lj4g0026809' => 'lja', 'Lj5g0012558' => 'lja', 'Lj5g0021586' => 'lja', 'Lsat_1_v5_gn_5_156840' => 'lsa', 'Lsat_1_v5_gn_8_73460' => 'lsa', 'Lsat_1_v5_gn_8_73481' => 'lsa', 'Lsat_1_v5_gn_9_31601' => 'lsa', 'Lsat_1_v5_gn_9_77320' => 'lsa', 'Manes.01G171300' => 'mes', 'Manes.01G171400' => 'mes', 'Manes.01G236100' => 'mes', 'Manes.02G130500' => 'mes', 'Manes.02G130600' => 'mes', 'Manes.03G180200' => 'mes', 'Manes.05G007000' => 'mes', 'Manes.08G084400' => 'mes', 'Manes.09G092600' => 'mes', 'Manes.15G027900' => 'mes', 'MBI04_g40948_MAGBIO' => 'mbi', 'MBI14_g12123_MAGBIO' => 'mbi', 'MBI18_g28915_MAGBIO' => 'mbi', 'MCO09G053' => 'mco', 'MCO11G782' => 'mco', 'MCO15G215' => 'mco', 'MD03G1088500' => 'mdo', 'MD03G1088600' => 'mdo', 'MD04G1130800' => 'mdo', 'MD09G1291700' => 'mdo', 'MD11G1097500' => 'mdo', 'MD11G1097600' => 'mdo', 'MD12G1143900' => 'mdo', 'MD13G1191400' => 'mdo', 'MD16G1191500' => 'mdo', 'Medtr1g085570' => 'mtr', 'Medtr1g104610' => 'mtr', 'Medtr2g097520' => 'mtr', 'Medtr4g021800' => 'mtr', 'Medtr4g021825' => 'mtr', 'Medtr4g064270' => 'mtr', 'Medtr4g064380' => 'mtr', 'Medtr7g062150' => 'mtr', 'MELO3C003138.2' => 'cme', 'MELO3C005187.2' => 'cme', 'MELO3C009252.2' => 'cme', 'MELO3C014481.2' => 'cme', 'MELO3C020616.2' => 'cme', 'MELO3C020617.2' => 'cme', 'MELO3C020618.2' => 'cme', 'Migut.G00328' => 'egut', 'Migut.J00320' => 'egut', 'Migut.L01000' => 'egut', 'Migut.L01953' => 'egut', 'MSTRG.10253' => 'ama', 'MSTRG.19077' => 'ama', 'MSTRG.26780' => 'ama', 'MSTRG.4023' => 'ama', 'MSTRG.5655' => 'ama', 'MSTRG.9992' => 'ama', 'Nitab4.5_0000043g0310' => 'nta', 'Nitab4.5_0000463g0080' => 'nta', 'Nitab4.5_0000705g0170' => 'nta', 'Nitab4.5_0001326g0060' => 'nta', 'Nitab4.5_0001628g0030' => 'nta', 'Nitab4.5_0002103g0110' => 'nta', 'Nitab4.5_0002946g0030' => 'nta', 'Nitab4.5_0004639g0030' => 'nta', 'Nn2g11149' => 'nnu', 'Nn2g13389' => 'nnu', 'Nn4g25326' => 'nnu', 'Nn4g26290' => 'nnu', 'Nn5g29865' => 'nnu', 'Oeu004163.1' => 'oeu', 'Oeu006901.1' => 'oeu', 'Oeu010096.1' => 'oeu', 'Oeu024340.1' => 'oeu', 'Oeu048369.1' => 'oeu', 'Os01g0973000' => 'osa', 'Os03g0273800' => 'osa', 'Os03g0701200' => 'osa', 'Os03g0834050' => 'osa', 'Os07g0634400' => 'osa', 'Peaxi162Scf00092g01414' => 'pax', 'Peaxi162Scf00165g00818' => 'pax', 'Peaxi162Scf00309g00516' => 'pax', 'Peaxi162Scf00774g00218' => 'pax', 'PGR004G1824' => 'pgr', 'PGR004G2606' => 'pgr', 'PGR031G2716' => 'pgr', 'PGR102G2460' => 'pgr', 'PGR142G2599' => 'pgr', 'PGSC0003DMG400000843' => 'stu', 'PGSC0003DMG400008829' => 'stu', 'PGSC0003DMG400030418' => 'stu', 'PGSC0003DMG400031834' => 'stu', 'PGSC0003DMG401028300' => 'stu', 'PGSC0003DMG402028300' => 'stu', 'Phvul.001G219300' => 'pvu', 'Phvul.007G056000' => 'pvu', 'Phvul.007G208000' => 'pvu', 'Phvul.008G119500' => 'pvu', 'Phvul.010G011200' => 'pvu', 'Phvul.010G014800' => 'pvu', 'Phvul.011G062900' => 'pvu', 'Phvul.L007043' => 'pvu', 'Potri.001G242300' => 'ptr', 'Potri.002G185300' => 'ptr', 'Potri.006G086900' => 'ptr', 'Potri.008G151700' => 'ptr', 'Potri.009G033500' => 'ptr', 'Potri.010G089300' => 'ptr', 'Potri.014G110800' => 'ptr', 'Pp3c27_8130' => 'ppa', 'Pp3c6_27410' => 'ppa', 'PRCOL_00001659' => 'pco', 'PRCOL_00001927' => 'pco', 'PRCOL_00003649' => 'pco', 'Prupe.1G011600' => 'ppe', 'Prupe.3G000800' => 'ppe', 'Prupe.3G001100' => 'ppe', 'Prupe.6G072700' => 'ppe', 'Prupe.6G072800' => 'ppe', 'Prupe.6G257300' => 'ppe', 'Prupe.8G033000' => 'ppe', 'Psat0s2633g0080' => 'psa', 'Psat0s3396g0080' => 'psa', 'Psat0s3396g0200' => 'psa', 'Psat3g139080' => 'psa', 'Psat5g285080' => 'psa', 'Psat6g157760' => 'psa', 'Psat6g208440' => 'psa', 'Psat7g215320' => 'psa', 'Psat7g215400' => 'psa', 'Psat7g235600' => 'psa', 'Psat7g235760' => 'psa', 'PSO063G4603' => 'pso', 'PSO210G0182' => 'pso', 'PSO210G0196' => 'pso', 'PSO339G0394' => 'pso', 'PSO339G4127' => 'pso', 'PSO513G0064' => 'pso', 'PSO761G0079' => 'pso', 'QL01p031003' => 'qlo', 'QL01p031078' => 'qlo', 'QL06p003004' => 'qlo', 'QL07p048731' => 'qlo', 'QL09p037427' => 'qlo', 'RcHm_v2.0_Chr3g0466361' => 'rch', 'RcHm_v2.0_Chr3g0485571' => 'rch', 'RcHm_v2.0_Chr4g0416551' => 'rch', 'RcHm_v2.0_Chr5g0065831' => 'rch', 'Rhsim01G0230500' => 'rsi', 'Rhsim05G0194000' => 'rsi', 'Rhsim08G0250400' => 'rsi', 'Sabra02G0131000' => 'sbr', 'Sabra06G0066300' => 'sbr', 'Sabra08G0115500' => 'sbr', 'Sabra09G0023900' => 'sbr', 'Sabra10G0054000' => 'sbr', 'Sabra14G0081500' => 'sbr', 'Sabra16G0147100' => 'sbr', 'SalBow2G2957' => 'sbo', 'SalBow4G3320' => 'sbo', 'SalBow8G1894' => 'sbo', 'Sc07g0007950' => 'sci', 'Sc12g0001360' => 'sci', 'Sc13g0004330' => 'sci', 'Sc20g0005010' => 'sci', 'Sed0000361' => 'sed', 'Sed0001706' => 'sed', 'Sed0002422' => 'sed', 'Sed0004029' => 'sed', 'Sed0004602' => 'sed', 'Sed0004943' => 'sed', 'Sed0008646' => 'sed', 'Sed0023313' => 'sed', 'Sed0024843' => 'sed', 'SEGI_00081' => 'sgi', 'SEGI_00947' => 'sgi', 'SEGI_04046' => 'sgi', 'SEGI_06880' => 'sgi', 'SEGI_09736' => 'sgi', 'SEGI_12741' => 'sgi', 'SEGI_14530' => 'sgi', 'SEGI_20705' => 'sgi', 'SEGI_26088' => 'sgi', 'SEGI_28323' => 'sgi', 'SEGI_33343' => 'sgi', 'SGA_v2.0_scaffold126G33775' => 'sas', 'SGA_v2.0_scaffold2G01337' => 'sas', 'SGA_v2.0_scaffold38G15006' => 'sas', 'SGA_v2.0_scaffold39G15264' => 'sas', 'SGA_v2.0_scaffold453G51880' => 'sas', 'SHI12696' => 'shi', 'SMO367G1096' => 'smo', 'Solyc01g068630.3' => 'sly', 'Solyc05g011880.3' => 'sly', 'Solyc06g076300.3' => 'sly', 'Solyc09g010940.4' => 'sly', 'Solyc09g075890.3' => 'sly', 'Sopen01g030560' => 'spe', 'Sopen05g006630' => 'spe', 'Sopen06g032720' => 'spe', 'Sopen09g005660' => 'spe', 'Sopen09g030690' => 'spe', 'Sp4g14540' => 'spa', 'Sp4g20030' => 'spa', 'Sp5g01320' => 'spa', 'Sp6g21170' => 'spa', 'Sp6g21180' => 'spa', 'Sp6g21190' => 'spa', 'Sp6g40220' => 'spa', 'TAR362G0122' => 'tar', 'TAR362G1338' => 'tar', 'TAR369G0590' => 'tar', 'TAR371G0824' => 'tar', 'TAR622G1429' => 'tar', 'TAR623G0734' => 'tar', 'TAR625G0441' => 'tar', 'TAR629G0976' => 'tar', 'TAR633G1195' => 'tar', 'TAR636G2660' => 'tar', 'THA.LOC104799440' => 'tha', 'THA.LOC104800966' => 'tha', 'THA.LOC104806559' => 'tha', 'THA.LOC104810765' => 'tha', 'THA.LOC104816266' => 'tha', 'THA.LOC104817419' => 'tha', 'THA.LOC104827021' => 'tha', 'Thecc.01G327400' => 'tca', 'Thecc.04G229200' => 'tca', 'Thecc.05G037400' => 'tca', 'Thecc.09G318600' => 'tca', 'Thecc.09G318700' => 'tca', 'Thhalv10006238m.g' => 'esa', 'Thhalv10014321m.g' => 'esa', 'Thhalv10014335m.g' => 'esa', 'Thhalv10015826m.g' => 'esa', 'Thhalv10017107m.g' => 'esa', 'Thhalv10017180m.g' => 'esa', 'Thhalv10029339m.g' => 'esa', 'TPR.G1699' => 'tpr', 'TPR.G23609' => 'tpr', 'TPR.G3081' => 'tpr', 'TPR.G40397' => 'tpr', 'TPR.G5522' => 'tpr', 'TPR.G5618' => 'tpr', 'TPR.G5626' => 'tpr', 'TWI09G1632' => 'twi', 'TWI23G1230' => 'twi', 'TWI53G1064' => 'twi', 'TWI59G0751' => 'twi', 'TWI74G0947' => 'twi', 'TWI77G0337' => 'twi', 'TWI79G1254' => 'twi', 'unitig_0.g2341' => 'ugi', 'unitig_26.g10006' => 'ugi', 'unitig_26.g10008' => 'ugi', 'unitig_26.g9192' => 'ugi', 'vmacro14547' => 'vma', 'vmacro15333' => 'vma', 'vmacro18743' => 'vma', 'vmacro20166' => 'vma', 'VMungo0331G0523' => 'vmu', 'VMungo0331G1202' => 'vmu', 'VMungo0720G1228' => 'vmu', 'VMungo0720G1514' => 'vmu', 'VMungo1080G0169' => 'vmu', 'VMungo1127G1475' => 'vmu', 'VMungo1383G1208' => 'vmu', 'VMungo1383G1698' => 'vmu', 'Zm00001eb012270' => 'zma', 'Zm00001eb054100' => 'zma', 'Zm00001eb063350' => 'zma', 'Zm00001eb328560' => 'zma', 'Zm00001eb342820' => 'zma', 'Zm00001eb362210' => 'zma', 'Zm00001eb397730' => 'zma', 'Zm00001eb399750' => 'zma' ) $gf_id = 'HOM05D000959' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000959' ) $data_identifier = 'HOM05D000959' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 5, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 5, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 10, 'mbi' => (int) 3, 'mco' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 2, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 3, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 11, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399750' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000959', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '622', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p07100' => 'bna', 'A03p11720' => 'bna', 'A05p08300' => 'bna', 'A05p13380' => 'bna', 'A09p54130' => 'bna', 'A10p16690' => 'bna', 'A10p16700' => 'bna', 'A10p33390' => 'bna', 'Aa31LG10G16020' => 'aar', 'Aa31LG1G11810' => 'aar', 'Aa31LG1G11830' => 'aar', 'Aa31LG1G22510' => 'aar', 'Aa31LG5G4890' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5793' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2310' => 'aag', 'Actinidia08499' => 'ach', 'Actinidia11262' => 'ach', 'Actinidia23926' => 'ach', 'Actinidia34420' => 'ach', 'Actinidia36970' => 'ach', 'Ah.02g111220' => 'amhyb', 'Ah.15g097750' => 'amhyb', 'AL4G27500' => 'aly', 'AL6G11470' => 'aly', 'AL8G35950' => 'aly', 'AL8G35960' => 'aly', 'AL8G35970' => 'aly', 'Aqoxy1G00912' => 'aox', 'Aqoxy2G02253' => 'aox', 'Aqoxy2G02411' => 'aox', 'Aqoxy5G00485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BZ66YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K8ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM4FUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6BF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HFV7XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25JBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0YNNV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MAKK6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P70IT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP2Z6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V61LZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YWP64R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3S9AI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7PGHH' => 'arhy', 'AT2G32150' => 'ath', 'AT3G62040' => 'ath', 'AT5G02230' => 'ath', 'AT5G59480' => 'ath', 'AT5G59490' => 'ath', 'ATR0332G060' => 'atr', 'ATR0559G190' => 'atr', 'ATR0693G294' => 'atr', 'Atru.chr3.3975' => 'acertr', 'Atru.chr3.3976' => 'acertr', 'Atru.chr3.3977' => 'acertr', 'Atru.chr4.2498' => 'acertr', 'Atru.chr5.838' => 'acertr', 'Atru.chr8.1990' => 'acertr', 'Atru.chr8.1991' => 'acertr', 'Atru.chr8.1992' => 'acertr', 'AUR62001759' => 'cqu', 'AUR62009545' => 'cqu', 'AUR62010474' => 'cqu', 'AUR62025820' => 'cqu', 'AUR62030422' => 'cqu', 'AUR62033605' => 'cqu', 'AUR62038615' => 'cqu', 'AUR62041347' => 'cqu', 'BcaB01g04574' => 'bca', 'BcaB02g09263' => 'bca', 'BcaB02g10453' => 'bca', 'BcaB05g22513' => 'bca', 'BcaB08g36253' => 'bca', 'BcaB08g36254' => 'bca', 'BcaC01g06519' => 'bca', 'BcaC02g11889' => 'bca', 'BcaC03g14010' => 'bca', 'BcaC03g18439' => 'bca', 'BcaC04g19765' => 'bca', 'BcaC09g48432' => 'bca', 'BcaNung07302' => 'bca', 'BolC2t06040H' => 'bol', 'BolC2t07346H' => 'bol', 'BolC3t13817H' => 'bol', 'BolC4t22625H' => 'bol', 'BolC4t23297H' => 'bol', 'BolC8t51278H' => 'bol', 'BolC9t58050H' => 'bol', 'BolC9t58051H' => 'bol', 'BolC9t60163H' => 'bol', 'BraA02t04712Z' => 'bra', 'BraA02t05791Z' => 'bra', 'BraA03t10483Z' => 'bra', 'BraA05t19795Z' => 'bra', 'BraA05t20276Z' => 'bra', 'BraA09t40827Z' => 'bra', 'BraA10t43750Z' => 'bra', 'BraA10t43751Z' => 'bra', 'BraA10t45370Z' => 'bra', 'C02p00400' => 'bna', 'C02p12460' => 'bna', 'C03p13680' => 'bna', 'C04p10270' => 'bna', 'C04p17500' => 'bna', 'C08p37010' => 'bna', 'C09p51880' => 'bna', 'C09p51890' => 'bna', 'C09p74300' => 'bna', 'CAN.G179.26' => 'can', 'CAN.G3384.1' => 'can', 'CAN.G394.68' => 'can', 'CAN.G907.13' => 'can', 'CANSAT11G0012' => 'cansat', 'CANSAT25G1586' => 'cansat', 'CANSAT35G0735' => 'cansat', 'CANSAT54G0556' => 'cansat', 'CANSAT64G0356' => 'cansat', 'CANSAT78G2042' => 'cansat', 'CARHR125920' => 'chi', 'CARHR131910' => 'chi', 'CARHR172390' => 'chi', 'CARHR211140' => 'chi', 'CARHR285850' => 'chi', 'CARHR285860' => 'chi', 'Carub.0004s1347' => 'cru', 'Carub.0004s1960' => 'cru', 'Carub.0005s2880' => 'cru', 'Carub.0006s0107' => 'cru', 'Carub.0008s2015' => 'cru', 'Carub.0008s2016' => 'cru', 'Carub.0008s2017' => 'cru', 'Ca_01315_v3' => 'car', 'Ca_05063_v3' => 'car', 'Ca_10231_v3' => 'car', 'Ca_10913_v3' => 'car', 'Ca_19156_v3' => 'car', 'Ca_23644_v3' => 'car', 'Ca_26735_v3' => 'car', 'Cc01_g13130' => 'ccan', 'Cc02_g21690' => 'ccan', 'Cc03_g03600' => 'ccan', 'Cc06_g02510' => 'ccan', 'CDE02G1265' => 'cde', 'CDE05G0415' => 'cde', 'CDE08G1082' => 'cde', 'Cfa005780' => 'cfa', 'Cfa011522' => 'cfa', 'Cfa011523' => 'cfa', 'Cfa015627' => 'cfa', 'Cfa017359' => 'cfa', 'Ciclev10005687m.g' => 'ccl', 'Ciclev10012173m.g' => 'ccl', 'Ciclev10021621m.g' => 'ccl', 'Ciclev10028968m.g' => 'ccl', 'Ciclev10029907m.g' => 'ccl', 'CiPaw.01G164800' => 'cil', 'CiPaw.07G083700' => 'cil', 'CiPaw.07G127000' => 'cil', 'CiPaw.07G136900' => 'cil', 'CiPaw.08G081700' => 'cil', 'CiPaw.09G194600' => 'cil', 'CiPaw.10G146500' => 'cil', 'CiPaw.13G091500' => 'cil', 'CiPaw.13G091600' => 'cil', 'ClCG00G003390' => 'cla', 'ClCG01G007220' => 'cla', 'ClCG03G001370' => 'cla', 'ClCG04G008100' => 'cla', 'ClCG06G006110' => 'cla', 'ClCG06G006130' => 'cla', 'ClCG10G021210' => 'cla', 'COL.COLO4_07648' => 'col', 'COL.COLO4_07650' => 'col', 'COL.COLO4_07651' => 'col', 'COL.COLO4_14780' => 'col', 'COL.COLO4_18546' => 'col', 'COL.COLO4_18547' => 'col', 'COL.COLO4_23103' => 'col', 'COL.COLO4_30419' => 'col', 'COL.COLO4_34232' => 'col', 'Cpa.g.sc169.20' => 'cpa', 'Cpa.g.sc57.45' => 'cpa', 'Cpa.g.sc58.124' => 'cpa', 'Cpa.g.sc58.125' => 'cpa', 'Cpa.g.sc81.118' => 'cpa', 'Cpa.g.sc81.119' => 'cpa', 'Cre12.g524700' => 'cre', 'CsaV3_1G034430' => 'csa', 'CsaV3_1G034440' => 'csa', 'CsaV3_1G034450' => 'csa', 'CsaV3_3G034830' => 'csa', 'CsaV3_4G025090' => 'csa', 'CsaV3_5G018660' => 'csa', 'CsaV3_6G038160' => 'csa', 'CSS0003447' => 'camsi', 'CSS0017840' => 'camsi', 'CSS0019260' => 'camsi', 'CSS0040375' => 'camsi', 'CSS0042533' => 'camsi', 'DCAR_005960' => 'dca', 'DCAR_012104' => 'dca', 'DCAR_012105' => 'dca', 'DCAR_012293' => 'dca', 'DCAR_015632' => 'dca', 'DCAR_024602' => 'dca', 'DCAR_028752' => 'dca', 'Dinv06261' => 'din', 'Dinv13982' => 'din', 'Dinv17029' => 'din', 'Dinv18463' => 'din', 'Dinv33181' => 'din', 'Dinv35585' => 'din', 'Dinv37161' => 'din', 'Dinv42977' => 'din', 'Dinv43122' => 'din', 'Dinv44517' => 'din', 'Duzib093G0256' => 'dzi', 'Duzib106G1254' => 'dzi', 'Duzib128G1789' => 'dzi', 'Duzib133G0633' => 'dzi', 'Duzib138G0510' => 'dzi', 'Duzib150G1084' => 'dzi', 'Duzib168G0488' => 'dzi', 'Duzib168G1523' => 'dzi', 'Duzib170G0133' => 'dzi', 'ECA234G1433' => 'eca', 'ECA236G1432' => 'eca', 'ECA236G2256' => 'eca', 'ECA236G2365' => 'eca', 'ECA236G4830' => 'eca', 'ECA248G1505' => 'eca', 'EL10Ac3g06431' => 'bvu', 'EL10Ac5g12577' => 'bvu', 'EL10Ac6g13533' => 'bvu', 'EL10Ac7g16045' => 'bvu', 'Eucgr.A01281' => 'egr', 'Eucgr.B02326' => 'egr', 'Eucgr.H03532' => 'egr', 'Eucgr.K00553' => 'egr', 'Eucgr.K03116' => 'egr', 'FAN02G3963' => 'fan', 'FAN05G0438' => 'fan', 'FAN09G2434' => 'fan', 'FAN12G3984' => 'fan', 'FAN14G0798' => 'fan', 'FAN17G0652' => 'fan', 'FAN19G1988' => 'fan', 'FAN22G0632' => 'fan', 'FAN23G0387' => 'fan', 'FAN26G1323' => 'fan', 'FAN28G0666' => 'fan', 'FvH4_1g26080' => 'fve', 'FvH4_3g36780' => 'fve', 'FvH4_4g15270' => 'fve', 'FvH4_6g13490' => 'fve', 'Glyma.01G098700' => 'gma', 'Glyma.03G065900' => 'gma', 'Glyma.03G073754' => 'gma', 'Glyma.03G073758' => 'gma', 'Glyma.03G083200' => 'gma', 'Glyma.03G225500' => 'gma', 'Glyma.05G037766' => 'gma', 'Glyma.07G133500' => 'gma', 'Glyma.10G139400' => 'gma', 'Glyma.10G248900' => 'gma', 'Glyma.11G137800' => 'gma', 'Glyma.12G061300' => 'gma', 'Glyma.13G337900' => 'gma', 'Glyma.15G036600' => 'gma', 'Glyma.18G182800' => 'gma', 'Glyma.19G222500' => 'gma', 'Glyma.20G144800' => 'gma', 'Gohir.A01G222000' => 'ghi', 'Gohir.A03G044000' => 'ghi', 'Gohir.A03G044100' => 'ghi', 'Gohir.A04G083100' => 'ghi', 'Gohir.A07G127200' => 'ghi', 'Gohir.A07G132400' => 'ghi', 'Gohir.A08G000700' => 'ghi', 'Gohir.A11G327300' => 'ghi', 'Gohir.D01G211500' => 'ghi', 'Gohir.D03G123400' => 'ghi', 'Gohir.D03G123500' => 'ghi', 'Gohir.D04G121800' => 'ghi', 'Gohir.D07G131500' => 'ghi', 'Gohir.D07G136600' => 'ghi', 'Gohir.D08G011600' => 'ghi', 'Gohir.D11G346200' => 'ghi', 'Gorai.001G142800' => 'gra', 'Gorai.001G148700' => 'gra', 'Gorai.002G257300' => 'gra', 'Gorai.003G130000' => 'gra', 'Gorai.003G130100' => 'gra', 'Gorai.004G005300' => 'gra', 'Gorai.007G376500' => 'gra', 'Gorai.012G104700' => 'gra', 'GSVIVG01017946001' => 'vvi', 'GSVIVG01024928001' => 'vvi', 'GSVIVG01028227001' => 'vvi', 'GSVIVG01034151001' => 'vvi', 'HanXRQChr05g0135031' => 'han', 'HanXRQChr05g0135041' => 'han', 'HanXRQChr05g0140021' => 'han', 'HanXRQChr06g0178981' => 'han', 'HanXRQChr07g0188251' => 'han', 'HanXRQChr08g0235311' => 'han', 'HanXRQChr09g0271011' => 'han', 'HanXRQChr10g0293321' => 'han', 'HanXRQChr13g0388171' => 'han', 'Haze_00916' => 'cav', 'Haze_05063' => 'cav', 'Haze_20814' => 'cav', 'Haze_24128' => 'cav', 'Hma1.2p1_0745F.1_g212010' => 'hma', 'Hma1.2p1_0757F.1_g213260' => 'hma', 'Hma1.2p1_0936F.1_g238840' => 'hma', 'Hma1.2p1_1735F.1_g299890' => 'hma', 'Hma1.2p1_1861F.1_g305685' => 'hma', 'HPP92_003397' => 'vpl', 'HPP92_012597' => 'vpl', 'HPP92_015520' => 'vpl', 'HPP92_015539' => 'vpl', 'HPP92_020373' => 'vpl', 'Hund04938' => 'sun', 'Hund10677' => 'sun', 'Hund11033' => 'sun', 'Hund12155' => 'sun', 'Lalb_Chr01g0022551' => 'lal', 'Lalb_Chr03g0042341' => 'lal', 'Lalb_Chr07g0192931' => 'lal', 'Lalb_Chr12g0209551' => 'lal', 'Lalb_Chr19g0125251' => 'lal', 'Lalb_Chr19g0137891' => 'lal', 'Lalb_Chr21g0304641' => 'lal', 'Lalb_Chr21g0309881' => 'lal', 'Lj1A5T12' => 'lonja', 'Lj1C148G10' => 'lonja', 'Lj2A93T83' => 'lonja', 'Lj3A738G68' => 'lonja', 'Lj3C966T1' => 'lonja', 'Lj3g0018958' => 'lja', 'Lj3g0021831' => 'lja', 'Lj3g0025443' => 'lja', 'Lj4g0026809' => 'lja', 'Lj5g0012558' => 'lja', 'Lj5g0021586' => 'lja', 'Lsat_1_v5_gn_5_156840' => 'lsa', 'Lsat_1_v5_gn_8_73460' => 'lsa', 'Lsat_1_v5_gn_8_73481' => 'lsa', 'Lsat_1_v5_gn_9_31601' => 'lsa', 'Lsat_1_v5_gn_9_77320' => 'lsa', 'Manes.01G171300' => 'mes', 'Manes.01G171400' => 'mes', 'Manes.01G236100' => 'mes', 'Manes.02G130500' => 'mes', 'Manes.02G130600' => 'mes', 'Manes.03G180200' => 'mes', 'Manes.05G007000' => 'mes', 'Manes.08G084400' => 'mes', 'Manes.09G092600' => 'mes', 'Manes.15G027900' => 'mes', 'MBI04_g40948_MAGBIO' => 'mbi', 'MBI14_g12123_MAGBIO' => 'mbi', 'MBI18_g28915_MAGBIO' => 'mbi', 'MCO09G053' => 'mco', 'MCO11G782' => 'mco', 'MCO15G215' => 'mco', 'MD03G1088500' => 'mdo', 'MD03G1088600' => 'mdo', 'MD04G1130800' => 'mdo', 'MD09G1291700' => 'mdo', 'MD11G1097500' => 'mdo', 'MD11G1097600' => 'mdo', 'MD12G1143900' => 'mdo', 'MD13G1191400' => 'mdo', 'MD16G1191500' => 'mdo', 'Medtr1g085570' => 'mtr', 'Medtr1g104610' => 'mtr', 'Medtr2g097520' => 'mtr', 'Medtr4g021800' => 'mtr', 'Medtr4g021825' => 'mtr', 'Medtr4g064270' => 'mtr', 'Medtr4g064380' => 'mtr', 'Medtr7g062150' => 'mtr', 'MELO3C003138.2' => 'cme', 'MELO3C005187.2' => 'cme', 'MELO3C009252.2' => 'cme', 'MELO3C014481.2' => 'cme', 'MELO3C020616.2' => 'cme', 'MELO3C020617.2' => 'cme', 'MELO3C020618.2' => 'cme', 'Migut.G00328' => 'egut', 'Migut.J00320' => 'egut', 'Migut.L01000' => 'egut', 'Migut.L01953' => 'egut', 'MSTRG.10253' => 'ama', 'MSTRG.19077' => 'ama', 'MSTRG.26780' => 'ama', 'MSTRG.4023' => 'ama', 'MSTRG.5655' => 'ama', 'MSTRG.9992' => 'ama', 'Nitab4.5_0000043g0310' => 'nta', 'Nitab4.5_0000463g0080' => 'nta', 'Nitab4.5_0000705g0170' => 'nta', 'Nitab4.5_0001326g0060' => 'nta', 'Nitab4.5_0001628g0030' => 'nta', 'Nitab4.5_0002103g0110' => 'nta', 'Nitab4.5_0002946g0030' => 'nta', 'Nitab4.5_0004639g0030' => 'nta', 'Nn2g11149' => 'nnu', 'Nn2g13389' => 'nnu', 'Nn4g25326' => 'nnu', 'Nn4g26290' => 'nnu', 'Nn5g29865' => 'nnu', 'Oeu004163.1' => 'oeu', 'Oeu006901.1' => 'oeu', 'Oeu010096.1' => 'oeu', 'Oeu024340.1' => 'oeu', 'Oeu048369.1' => 'oeu', 'Os01g0973000' => 'osa', 'Os03g0273800' => 'osa', 'Os03g0701200' => 'osa', 'Os03g0834050' => 'osa', 'Os07g0634400' => 'osa', 'Peaxi162Scf00092g01414' => 'pax', 'Peaxi162Scf00165g00818' => 'pax', 'Peaxi162Scf00309g00516' => 'pax', 'Peaxi162Scf00774g00218' => 'pax', 'PGR004G1824' => 'pgr', 'PGR004G2606' => 'pgr', 'PGR031G2716' => 'pgr', 'PGR102G2460' => 'pgr', 'PGR142G2599' => 'pgr', 'PGSC0003DMG400000843' => 'stu', 'PGSC0003DMG400008829' => 'stu', 'PGSC0003DMG400030418' => 'stu', 'PGSC0003DMG400031834' => 'stu', 'PGSC0003DMG401028300' => 'stu', 'PGSC0003DMG402028300' => 'stu', 'Phvul.001G219300' => 'pvu', 'Phvul.007G056000' => 'pvu', 'Phvul.007G208000' => 'pvu', 'Phvul.008G119500' => 'pvu', 'Phvul.010G011200' => 'pvu', 'Phvul.010G014800' => 'pvu', 'Phvul.011G062900' => 'pvu', 'Phvul.L007043' => 'pvu', 'Potri.001G242300' => 'ptr', 'Potri.002G185300' => 'ptr', 'Potri.006G086900' => 'ptr', 'Potri.008G151700' => 'ptr', 'Potri.009G033500' => 'ptr', 'Potri.010G089300' => 'ptr', 'Potri.014G110800' => 'ptr', 'Pp3c27_8130' => 'ppa', 'Pp3c6_27410' => 'ppa', 'PRCOL_00001659' => 'pco', 'PRCOL_00001927' => 'pco', 'PRCOL_00003649' => 'pco', 'Prupe.1G011600' => 'ppe', 'Prupe.3G000800' => 'ppe', 'Prupe.3G001100' => 'ppe', 'Prupe.6G072700' => 'ppe', 'Prupe.6G072800' => 'ppe', 'Prupe.6G257300' => 'ppe', 'Prupe.8G033000' => 'ppe', 'Psat0s2633g0080' => 'psa', 'Psat0s3396g0080' => 'psa', 'Psat0s3396g0200' => 'psa', 'Psat3g139080' => 'psa', 'Psat5g285080' => 'psa', 'Psat6g157760' => 'psa', 'Psat6g208440' => 'psa', 'Psat7g215320' => 'psa', 'Psat7g215400' => 'psa', 'Psat7g235600' => 'psa', 'Psat7g235760' => 'psa', 'PSO063G4603' => 'pso', 'PSO210G0182' => 'pso', 'PSO210G0196' => 'pso', 'PSO339G0394' => 'pso', 'PSO339G4127' => 'pso', 'PSO513G0064' => 'pso', 'PSO761G0079' => 'pso', 'QL01p031003' => 'qlo', 'QL01p031078' => 'qlo', 'QL06p003004' => 'qlo', 'QL07p048731' => 'qlo', 'QL09p037427' => 'qlo', 'RcHm_v2.0_Chr3g0466361' => 'rch', 'RcHm_v2.0_Chr3g0485571' => 'rch', 'RcHm_v2.0_Chr4g0416551' => 'rch', 'RcHm_v2.0_Chr5g0065831' => 'rch', 'Rhsim01G0230500' => 'rsi', 'Rhsim05G0194000' => 'rsi', 'Rhsim08G0250400' => 'rsi', 'Sabra02G0131000' => 'sbr', 'Sabra06G0066300' => 'sbr', 'Sabra08G0115500' => 'sbr', 'Sabra09G0023900' => 'sbr', 'Sabra10G0054000' => 'sbr', 'Sabra14G0081500' => 'sbr', 'Sabra16G0147100' => 'sbr', 'SalBow2G2957' => 'sbo', 'SalBow4G3320' => 'sbo', 'SalBow8G1894' => 'sbo', 'Sc07g0007950' => 'sci', 'Sc12g0001360' => 'sci', 'Sc13g0004330' => 'sci', 'Sc20g0005010' => 'sci', 'Sed0000361' => 'sed', 'Sed0001706' => 'sed', 'Sed0002422' => 'sed', 'Sed0004029' => 'sed', 'Sed0004602' => 'sed', 'Sed0004943' => 'sed', 'Sed0008646' => 'sed', 'Sed0023313' => 'sed', 'Sed0024843' => 'sed', 'SEGI_00081' => 'sgi', 'SEGI_00947' => 'sgi', 'SEGI_04046' => 'sgi', 'SEGI_06880' => 'sgi', 'SEGI_09736' => 'sgi', 'SEGI_12741' => 'sgi', 'SEGI_14530' => 'sgi', 'SEGI_20705' => 'sgi', 'SEGI_26088' => 'sgi', 'SEGI_28323' => 'sgi', 'SEGI_33343' => 'sgi', 'SGA_v2.0_scaffold126G33775' => 'sas', 'SGA_v2.0_scaffold2G01337' => 'sas', 'SGA_v2.0_scaffold38G15006' => 'sas', 'SGA_v2.0_scaffold39G15264' => 'sas', 'SGA_v2.0_scaffold453G51880' => 'sas', 'SHI12696' => 'shi', 'SMO367G1096' => 'smo', 'Solyc01g068630.3' => 'sly', 'Solyc05g011880.3' => 'sly', 'Solyc06g076300.3' => 'sly', 'Solyc09g010940.4' => 'sly', 'Solyc09g075890.3' => 'sly', 'Sopen01g030560' => 'spe', 'Sopen05g006630' => 'spe', 'Sopen06g032720' => 'spe', 'Sopen09g005660' => 'spe', 'Sopen09g030690' => 'spe', 'Sp4g14540' => 'spa', 'Sp4g20030' => 'spa', 'Sp5g01320' => 'spa', 'Sp6g21170' => 'spa', 'Sp6g21180' => 'spa', 'Sp6g21190' => 'spa', 'Sp6g40220' => 'spa', 'TAR362G0122' => 'tar', 'TAR362G1338' => 'tar', 'TAR369G0590' => 'tar', 'TAR371G0824' => 'tar', 'TAR622G1429' => 'tar', 'TAR623G0734' => 'tar', 'TAR625G0441' => 'tar', 'TAR629G0976' => 'tar', 'TAR633G1195' => 'tar', 'TAR636G2660' => 'tar', 'THA.LOC104799440' => 'tha', 'THA.LOC104800966' => 'tha', 'THA.LOC104806559' => 'tha', 'THA.LOC104810765' => 'tha', 'THA.LOC104816266' => 'tha', 'THA.LOC104817419' => 'tha', 'THA.LOC104827021' => 'tha', 'Thecc.01G327400' => 'tca', 'Thecc.04G229200' => 'tca', 'Thecc.05G037400' => 'tca', 'Thecc.09G318600' => 'tca', 'Thecc.09G318700' => 'tca', 'Thhalv10006238m.g' => 'esa', 'Thhalv10014321m.g' => 'esa', 'Thhalv10014335m.g' => 'esa', 'Thhalv10015826m.g' => 'esa', 'Thhalv10017107m.g' => 'esa', 'Thhalv10017180m.g' => 'esa', 'Thhalv10029339m.g' => 'esa', 'TPR.G1699' => 'tpr', 'TPR.G23609' => 'tpr', 'TPR.G3081' => 'tpr', 'TPR.G40397' => 'tpr', 'TPR.G5522' => 'tpr', 'TPR.G5618' => 'tpr', 'TPR.G5626' => 'tpr', 'TWI09G1632' => 'twi', 'TWI23G1230' => 'twi', 'TWI53G1064' => 'twi', 'TWI59G0751' => 'twi', 'TWI74G0947' => 'twi', 'TWI77G0337' => 'twi', 'TWI79G1254' => 'twi', 'unitig_0.g2341' => 'ugi', 'unitig_26.g10006' => 'ugi', 'unitig_26.g10008' => 'ugi', 'unitig_26.g9192' => 'ugi', 'vmacro14547' => 'vma', 'vmacro15333' => 'vma', 'vmacro18743' => 'vma', 'vmacro20166' => 'vma', 'VMungo0331G0523' => 'vmu', 'VMungo0331G1202' => 'vmu', 'VMungo0720G1228' => 'vmu', 'VMungo0720G1514' => 'vmu', 'VMungo1080G0169' => 'vmu', 'VMungo1127G1475' => 'vmu', 'VMungo1383G1208' => 'vmu', 'VMungo1383G1698' => 'vmu', 'Zm00001eb012270' => 'zma', 'Zm00001eb054100' => 'zma', 'Zm00001eb063350' => 'zma', 'Zm00001eb328560' => 'zma', 'Zm00001eb342820' => 'zma', 'Zm00001eb362210' => 'zma', 'Zm00001eb397730' => 'zma', 'Zm00001eb399750' => 'zma' ), 'gf_id' => 'HOM05D000959', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000959' ), 'data_identifier' => 'HOM05D000959', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000959', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '622', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p07100' => 'bna', 'A03p11720' => 'bna', 'A05p08300' => 'bna', 'A05p13380' => 'bna', 'A09p54130' => 'bna', 'A10p16690' => 'bna', 'A10p16700' => 'bna', 'A10p33390' => 'bna', 'Aa31LG10G16020' => 'aar', 'Aa31LG1G11810' => 'aar', 'Aa31LG1G11830' => 'aar', 'Aa31LG1G22510' => 'aar', 'Aa31LG5G4890' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5793' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2310' => 'aag', 'Actinidia08499' => 'ach', 'Actinidia11262' => 'ach', 'Actinidia23926' => 'ach', 'Actinidia34420' => 'ach', 'Actinidia36970' => 'ach', 'Ah.02g111220' => 'amhyb', 'Ah.15g097750' => 'amhyb', 'AL4G27500' => 'aly', 'AL6G11470' => 'aly', 'AL8G35950' => 'aly', 'AL8G35960' => 'aly', 'AL8G35970' => 'aly', 'Aqoxy1G00912' => 'aox', 'Aqoxy2G02253' => 'aox', 'Aqoxy2G02411' => 'aox', 'Aqoxy5G00485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BZ66YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K8ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM4FUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6BF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HFV7XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25JBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0YNNV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MAKK6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P70IT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP2Z6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V61LZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YWP64R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3S9AI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7PGHH' => 'arhy', 'AT2G32150' => 'ath', 'AT3G62040' => 'ath', 'AT5G02230' => 'ath', 'AT5G59480' => 'ath', 'AT5G59490' => 'ath', 'ATR0332G060' => 'atr', 'ATR0559G190' => 'atr', 'ATR0693G294' => 'atr', 'Atru.chr3.3975' => 'acertr', 'Atru.chr3.3976' => 'acertr', 'Atru.chr3.3977' => 'acertr', 'Atru.chr4.2498' => 'acertr', 'Atru.chr5.838' => 'acertr', 'Atru.chr8.1990' => 'acertr', 'Atru.chr8.1991' => 'acertr', 'Atru.chr8.1992' => 'acertr', 'AUR62001759' => 'cqu', 'AUR62009545' => 'cqu', 'AUR62010474' => 'cqu', 'AUR62025820' => 'cqu', 'AUR62030422' => 'cqu', 'AUR62033605' => 'cqu', 'AUR62038615' => 'cqu', 'AUR62041347' => 'cqu', 'BcaB01g04574' => 'bca', 'BcaB02g09263' => 'bca', 'BcaB02g10453' => 'bca', 'BcaB05g22513' => 'bca', 'BcaB08g36253' => 'bca', 'BcaB08g36254' => 'bca', 'BcaC01g06519' => 'bca', 'BcaC02g11889' => 'bca', 'BcaC03g14010' => 'bca', 'BcaC03g18439' => 'bca', 'BcaC04g19765' => 'bca', 'BcaC09g48432' => 'bca', 'BcaNung07302' => 'bca', 'BolC2t06040H' => 'bol', 'BolC2t07346H' => 'bol', 'BolC3t13817H' => 'bol', 'BolC4t22625H' => 'bol', 'BolC4t23297H' => 'bol', 'BolC8t51278H' => 'bol', 'BolC9t58050H' => 'bol', 'BolC9t58051H' => 'bol', 'BolC9t60163H' => 'bol', 'BraA02t04712Z' => 'bra', 'BraA02t05791Z' => 'bra', 'BraA03t10483Z' => 'bra', 'BraA05t19795Z' => 'bra', 'BraA05t20276Z' => 'bra', 'BraA09t40827Z' => 'bra', 'BraA10t43750Z' => 'bra', 'BraA10t43751Z' => 'bra', 'BraA10t45370Z' => 'bra', 'C02p00400' => 'bna', 'C02p12460' => 'bna', 'C03p13680' => 'bna', 'C04p10270' => 'bna', 'C04p17500' => 'bna', 'C08p37010' => 'bna', 'C09p51880' => 'bna', 'C09p51890' => 'bna', 'C09p74300' => 'bna', 'CAN.G179.26' => 'can', 'CAN.G3384.1' => 'can', 'CAN.G394.68' => 'can', 'CAN.G907.13' => 'can', 'CANSAT11G0012' => 'cansat', 'CANSAT25G1586' => 'cansat', 'CANSAT35G0735' => 'cansat', 'CANSAT54G0556' => 'cansat', 'CANSAT64G0356' => 'cansat', 'CANSAT78G2042' => 'cansat', 'CARHR125920' => 'chi', 'CARHR131910' => 'chi', 'CARHR172390' => 'chi', 'CARHR211140' => 'chi', 'CARHR285850' => 'chi', 'CARHR285860' => 'chi', 'Carub.0004s1347' => 'cru', 'Carub.0004s1960' => 'cru', 'Carub.0005s2880' => 'cru', 'Carub.0006s0107' => 'cru', 'Carub.0008s2015' => 'cru', 'Carub.0008s2016' => 'cru', 'Carub.0008s2017' => 'cru', 'Ca_01315_v3' => 'car', 'Ca_05063_v3' => 'car', 'Ca_10231_v3' => 'car', 'Ca_10913_v3' => 'car', 'Ca_19156_v3' => 'car', 'Ca_23644_v3' => 'car', 'Ca_26735_v3' => 'car', 'Cc01_g13130' => 'ccan', 'Cc02_g21690' => 'ccan', 'Cc03_g03600' => 'ccan', 'Cc06_g02510' => 'ccan', 'CDE02G1265' => 'cde', 'CDE05G0415' => 'cde', 'CDE08G1082' => 'cde', 'Cfa005780' => 'cfa', 'Cfa011522' => 'cfa', 'Cfa011523' => 'cfa', 'Cfa015627' => 'cfa', 'Cfa017359' => 'cfa', 'Ciclev10005687m.g' => 'ccl', 'Ciclev10012173m.g' => 'ccl', 'Ciclev10021621m.g' => 'ccl', 'Ciclev10028968m.g' => 'ccl', 'Ciclev10029907m.g' => 'ccl', 'CiPaw.01G164800' => 'cil', 'CiPaw.07G083700' => 'cil', 'CiPaw.07G127000' => 'cil', 'CiPaw.07G136900' => 'cil', 'CiPaw.08G081700' => 'cil', 'CiPaw.09G194600' => 'cil', 'CiPaw.10G146500' => 'cil', 'CiPaw.13G091500' => 'cil', 'CiPaw.13G091600' => 'cil', 'ClCG00G003390' => 'cla', 'ClCG01G007220' => 'cla', 'ClCG03G001370' => 'cla', 'ClCG04G008100' => 'cla', 'ClCG06G006110' => 'cla', 'ClCG06G006130' => 'cla', 'ClCG10G021210' => 'cla', 'COL.COLO4_07648' => 'col', 'COL.COLO4_07650' => 'col', 'COL.COLO4_07651' => 'col', 'COL.COLO4_14780' => 'col', 'COL.COLO4_18546' => 'col', 'COL.COLO4_18547' => 'col', 'COL.COLO4_23103' => 'col', 'COL.COLO4_30419' => 'col', 'COL.COLO4_34232' => 'col', 'Cpa.g.sc169.20' => 'cpa', 'Cpa.g.sc57.45' => 'cpa', 'Cpa.g.sc58.124' => 'cpa', 'Cpa.g.sc58.125' => 'cpa', 'Cpa.g.sc81.118' => 'cpa', 'Cpa.g.sc81.119' => 'cpa', 'Cre12.g524700' => 'cre', 'CsaV3_1G034430' => 'csa', 'CsaV3_1G034440' => 'csa', 'CsaV3_1G034450' => 'csa', 'CsaV3_3G034830' => 'csa', 'CsaV3_4G025090' => 'csa', 'CsaV3_5G018660' => 'csa', 'CsaV3_6G038160' => 'csa', 'CSS0003447' => 'camsi', 'CSS0017840' => 'camsi', 'CSS0019260' => 'camsi', 'CSS0040375' => 'camsi', 'CSS0042533' => 'camsi', 'DCAR_005960' => 'dca', 'DCAR_012104' => 'dca', 'DCAR_012105' => 'dca', 'DCAR_012293' => 'dca', 'DCAR_015632' => 'dca', 'DCAR_024602' => 'dca', 'DCAR_028752' => 'dca', 'Dinv06261' => 'din', 'Dinv13982' => 'din', 'Dinv17029' => 'din', 'Dinv18463' => 'din', 'Dinv33181' => 'din', 'Dinv35585' => 'din', 'Dinv37161' => 'din', 'Dinv42977' => 'din', 'Dinv43122' => 'din', 'Dinv44517' => 'din', 'Duzib093G0256' => 'dzi', 'Duzib106G1254' => 'dzi', 'Duzib128G1789' => 'dzi', 'Duzib133G0633' => 'dzi', 'Duzib138G0510' => 'dzi', 'Duzib150G1084' => 'dzi', 'Duzib168G0488' => 'dzi', 'Duzib168G1523' => 'dzi', 'Duzib170G0133' => 'dzi', 'ECA234G1433' => 'eca', 'ECA236G1432' => 'eca', 'ECA236G2256' => 'eca', 'ECA236G2365' => 'eca', 'ECA236G4830' => 'eca', 'ECA248G1505' => 'eca', 'EL10Ac3g06431' => 'bvu', 'EL10Ac5g12577' => 'bvu', 'EL10Ac6g13533' => 'bvu', 'EL10Ac7g16045' => 'bvu', 'Eucgr.A01281' => 'egr', 'Eucgr.B02326' => 'egr', 'Eucgr.H03532' => 'egr', 'Eucgr.K00553' => 'egr', 'Eucgr.K03116' => 'egr', 'FAN02G3963' => 'fan', 'FAN05G0438' => 'fan', 'FAN09G2434' => 'fan', 'FAN12G3984' => 'fan', 'FAN14G0798' => 'fan', 'FAN17G0652' => 'fan', 'FAN19G1988' => 'fan', 'FAN22G0632' => 'fan', 'FAN23G0387' => 'fan', 'FAN26G1323' => 'fan', 'FAN28G0666' => 'fan', 'FvH4_1g26080' => 'fve', 'FvH4_3g36780' => 'fve', 'FvH4_4g15270' => 'fve', 'FvH4_6g13490' => 'fve', 'Glyma.01G098700' => 'gma', 'Glyma.03G065900' => 'gma', 'Glyma.03G073754' => 'gma', 'Glyma.03G073758' => 'gma', 'Glyma.03G083200' => 'gma', 'Glyma.03G225500' => 'gma', 'Glyma.05G037766' => 'gma', 'Glyma.07G133500' => 'gma', 'Glyma.10G139400' => 'gma', 'Glyma.10G248900' => 'gma', 'Glyma.11G137800' => 'gma', 'Glyma.12G061300' => 'gma', 'Glyma.13G337900' => 'gma', 'Glyma.15G036600' => 'gma', 'Glyma.18G182800' => 'gma', 'Glyma.19G222500' => 'gma', 'Glyma.20G144800' => 'gma', 'Gohir.A01G222000' => 'ghi', 'Gohir.A03G044000' => 'ghi', 'Gohir.A03G044100' => 'ghi', 'Gohir.A04G083100' => 'ghi', 'Gohir.A07G127200' => 'ghi', 'Gohir.A07G132400' => 'ghi', 'Gohir.A08G000700' => 'ghi', 'Gohir.A11G327300' => 'ghi', 'Gohir.D01G211500' => 'ghi', 'Gohir.D03G123400' => 'ghi', 'Gohir.D03G123500' => 'ghi', 'Gohir.D04G121800' => 'ghi', 'Gohir.D07G131500' => 'ghi', 'Gohir.D07G136600' => 'ghi', 'Gohir.D08G011600' => 'ghi', 'Gohir.D11G346200' => 'ghi', 'Gorai.001G142800' => 'gra', 'Gorai.001G148700' => 'gra', 'Gorai.002G257300' => 'gra', 'Gorai.003G130000' => 'gra', 'Gorai.003G130100' => 'gra', 'Gorai.004G005300' => 'gra', 'Gorai.007G376500' => 'gra', 'Gorai.012G104700' => 'gra', 'GSVIVG01017946001' => 'vvi', 'GSVIVG01024928001' => 'vvi', 'GSVIVG01028227001' => 'vvi', 'GSVIVG01034151001' => 'vvi', 'HanXRQChr05g0135031' => 'han', 'HanXRQChr05g0135041' => 'han', 'HanXRQChr05g0140021' => 'han', 'HanXRQChr06g0178981' => 'han', 'HanXRQChr07g0188251' => 'han', 'HanXRQChr08g0235311' => 'han', 'HanXRQChr09g0271011' => 'han', 'HanXRQChr10g0293321' => 'han', 'HanXRQChr13g0388171' => 'han', 'Haze_00916' => 'cav', 'Haze_05063' => 'cav', 'Haze_20814' => 'cav', 'Haze_24128' => 'cav', 'Hma1.2p1_0745F.1_g212010' => 'hma', 'Hma1.2p1_0757F.1_g213260' => 'hma', 'Hma1.2p1_0936F.1_g238840' => 'hma', 'Hma1.2p1_1735F.1_g299890' => 'hma', 'Hma1.2p1_1861F.1_g305685' => 'hma', 'HPP92_003397' => 'vpl', 'HPP92_012597' => 'vpl', 'HPP92_015520' => 'vpl', 'HPP92_015539' => 'vpl', 'HPP92_020373' => 'vpl', 'Hund04938' => 'sun', 'Hund10677' => 'sun', 'Hund11033' => 'sun', 'Hund12155' => 'sun', 'Lalb_Chr01g0022551' => 'lal', 'Lalb_Chr03g0042341' => 'lal', 'Lalb_Chr07g0192931' => 'lal', 'Lalb_Chr12g0209551' => 'lal', 'Lalb_Chr19g0125251' => 'lal', 'Lalb_Chr19g0137891' => 'lal', 'Lalb_Chr21g0304641' => 'lal', 'Lalb_Chr21g0309881' => 'lal', 'Lj1A5T12' => 'lonja', 'Lj1C148G10' => 'lonja', 'Lj2A93T83' => 'lonja', 'Lj3A738G68' => 'lonja', 'Lj3C966T1' => 'lonja', 'Lj3g0018958' => 'lja', 'Lj3g0021831' => 'lja', 'Lj3g0025443' => 'lja', 'Lj4g0026809' => 'lja', 'Lj5g0012558' => 'lja', 'Lj5g0021586' => 'lja', 'Lsat_1_v5_gn_5_156840' => 'lsa', 'Lsat_1_v5_gn_8_73460' => 'lsa', 'Lsat_1_v5_gn_8_73481' => 'lsa', 'Lsat_1_v5_gn_9_31601' => 'lsa', 'Lsat_1_v5_gn_9_77320' => 'lsa', 'Manes.01G171300' => 'mes', 'Manes.01G171400' => 'mes', 'Manes.01G236100' => 'mes', 'Manes.02G130500' => 'mes', 'Manes.02G130600' => 'mes', 'Manes.03G180200' => 'mes', 'Manes.05G007000' => 'mes', 'Manes.08G084400' => 'mes', 'Manes.09G092600' => 'mes', 'Manes.15G027900' => 'mes', 'MBI04_g40948_MAGBIO' => 'mbi', 'MBI14_g12123_MAGBIO' => 'mbi', 'MBI18_g28915_MAGBIO' => 'mbi', 'MCO09G053' => 'mco', 'MCO11G782' => 'mco', 'MCO15G215' => 'mco', 'MD03G1088500' => 'mdo', 'MD03G1088600' => 'mdo', 'MD04G1130800' => 'mdo', 'MD09G1291700' => 'mdo', 'MD11G1097500' => 'mdo', 'MD11G1097600' => 'mdo', 'MD12G1143900' => 'mdo', 'MD13G1191400' => 'mdo', 'MD16G1191500' => 'mdo', 'Medtr1g085570' => 'mtr', 'Medtr1g104610' => 'mtr', 'Medtr2g097520' => 'mtr', 'Medtr4g021800' => 'mtr', 'Medtr4g021825' => 'mtr', 'Medtr4g064270' => 'mtr', 'Medtr4g064380' => 'mtr', 'Medtr7g062150' => 'mtr', 'MELO3C003138.2' => 'cme', 'MELO3C005187.2' => 'cme', 'MELO3C009252.2' => 'cme', 'MELO3C014481.2' => 'cme', 'MELO3C020616.2' => 'cme', 'MELO3C020617.2' => 'cme', 'MELO3C020618.2' => 'cme', 'Migut.G00328' => 'egut', 'Migut.J00320' => 'egut', 'Migut.L01000' => 'egut', 'Migut.L01953' => 'egut', 'MSTRG.10253' => 'ama', 'MSTRG.19077' => 'ama', 'MSTRG.26780' => 'ama', 'MSTRG.4023' => 'ama', 'MSTRG.5655' => 'ama', 'MSTRG.9992' => 'ama', 'Nitab4.5_0000043g0310' => 'nta', 'Nitab4.5_0000463g0080' => 'nta', 'Nitab4.5_0000705g0170' => 'nta', 'Nitab4.5_0001326g0060' => 'nta', 'Nitab4.5_0001628g0030' => 'nta', 'Nitab4.5_0002103g0110' => 'nta', 'Nitab4.5_0002946g0030' => 'nta', 'Nitab4.5_0004639g0030' => 'nta', 'Nn2g11149' => 'nnu', 'Nn2g13389' => 'nnu', 'Nn4g25326' => 'nnu', 'Nn4g26290' => 'nnu', 'Nn5g29865' => 'nnu', 'Oeu004163.1' => 'oeu', 'Oeu006901.1' => 'oeu', 'Oeu010096.1' => 'oeu', 'Oeu024340.1' => 'oeu', 'Oeu048369.1' => 'oeu', 'Os01g0973000' => 'osa', 'Os03g0273800' => 'osa', 'Os03g0701200' => 'osa', 'Os03g0834050' => 'osa', 'Os07g0634400' => 'osa', 'Peaxi162Scf00092g01414' => 'pax', 'Peaxi162Scf00165g00818' => 'pax', 'Peaxi162Scf00309g00516' => 'pax', 'Peaxi162Scf00774g00218' => 'pax', 'PGR004G1824' => 'pgr', 'PGR004G2606' => 'pgr', 'PGR031G2716' => 'pgr', 'PGR102G2460' => 'pgr', 'PGR142G2599' => 'pgr', 'PGSC0003DMG400000843' => 'stu', 'PGSC0003DMG400008829' => 'stu', 'PGSC0003DMG400030418' => 'stu', 'PGSC0003DMG400031834' => 'stu', 'PGSC0003DMG401028300' => 'stu', 'PGSC0003DMG402028300' => 'stu', 'Phvul.001G219300' => 'pvu', 'Phvul.007G056000' => 'pvu', 'Phvul.007G208000' => 'pvu', 'Phvul.008G119500' => 'pvu', 'Phvul.010G011200' => 'pvu', 'Phvul.010G014800' => 'pvu', 'Phvul.011G062900' => 'pvu', 'Phvul.L007043' => 'pvu', 'Potri.001G242300' => 'ptr', 'Potri.002G185300' => 'ptr', 'Potri.006G086900' => 'ptr', 'Potri.008G151700' => 'ptr', 'Potri.009G033500' => 'ptr', 'Potri.010G089300' => 'ptr', 'Potri.014G110800' => 'ptr', 'Pp3c27_8130' => 'ppa', 'Pp3c6_27410' => 'ppa', 'PRCOL_00001659' => 'pco', 'PRCOL_00001927' => 'pco', 'PRCOL_00003649' => 'pco', 'Prupe.1G011600' => 'ppe', 'Prupe.3G000800' => 'ppe', 'Prupe.3G001100' => 'ppe', 'Prupe.6G072700' => 'ppe', 'Prupe.6G072800' => 'ppe', 'Prupe.6G257300' => 'ppe', 'Prupe.8G033000' => 'ppe', 'Psat0s2633g0080' => 'psa', 'Psat0s3396g0080' => 'psa', 'Psat0s3396g0200' => 'psa', 'Psat3g139080' => 'psa', 'Psat5g285080' => 'psa', 'Psat6g157760' => 'psa', 'Psat6g208440' => 'psa', 'Psat7g215320' => 'psa', 'Psat7g215400' => 'psa', 'Psat7g235600' => 'psa', 'Psat7g235760' => 'psa', 'PSO063G4603' => 'pso', 'PSO210G0182' => 'pso', 'PSO210G0196' => 'pso', 'PSO339G0394' => 'pso', 'PSO339G4127' => 'pso', 'PSO513G0064' => 'pso', 'PSO761G0079' => 'pso', 'QL01p031003' => 'qlo', 'QL01p031078' => 'qlo', 'QL06p003004' => 'qlo', 'QL07p048731' => 'qlo', 'QL09p037427' => 'qlo', 'RcHm_v2.0_Chr3g0466361' => 'rch', 'RcHm_v2.0_Chr3g0485571' => 'rch', 'RcHm_v2.0_Chr4g0416551' => 'rch', 'RcHm_v2.0_Chr5g0065831' => 'rch', 'Rhsim01G0230500' => 'rsi', 'Rhsim05G0194000' => 'rsi', 'Rhsim08G0250400' => 'rsi', 'Sabra02G0131000' => 'sbr', 'Sabra06G0066300' => 'sbr', 'Sabra08G0115500' => 'sbr', 'Sabra09G0023900' => 'sbr', 'Sabra10G0054000' => 'sbr', 'Sabra14G0081500' => 'sbr', 'Sabra16G0147100' => 'sbr', 'SalBow2G2957' => 'sbo', 'SalBow4G3320' => 'sbo', 'SalBow8G1894' => 'sbo', 'Sc07g0007950' => 'sci', 'Sc12g0001360' => 'sci', 'Sc13g0004330' => 'sci', 'Sc20g0005010' => 'sci', 'Sed0000361' => 'sed', 'Sed0001706' => 'sed', 'Sed0002422' => 'sed', 'Sed0004029' => 'sed', 'Sed0004602' => 'sed', 'Sed0004943' => 'sed', 'Sed0008646' => 'sed', 'Sed0023313' => 'sed', 'Sed0024843' => 'sed', 'SEGI_00081' => 'sgi', 'SEGI_00947' => 'sgi', 'SEGI_04046' => 'sgi', 'SEGI_06880' => 'sgi', 'SEGI_09736' => 'sgi', 'SEGI_12741' => 'sgi', 'SEGI_14530' => 'sgi', 'SEGI_20705' => 'sgi', 'SEGI_26088' => 'sgi', 'SEGI_28323' => 'sgi', 'SEGI_33343' => 'sgi', 'SGA_v2.0_scaffold126G33775' => 'sas', 'SGA_v2.0_scaffold2G01337' => 'sas', 'SGA_v2.0_scaffold38G15006' => 'sas', 'SGA_v2.0_scaffold39G15264' => 'sas', 'SGA_v2.0_scaffold453G51880' => 'sas', 'SHI12696' => 'shi', 'SMO367G1096' => 'smo', 'Solyc01g068630.3' => 'sly', 'Solyc05g011880.3' => 'sly', 'Solyc06g076300.3' => 'sly', 'Solyc09g010940.4' => 'sly', 'Solyc09g075890.3' => 'sly', 'Sopen01g030560' => 'spe', 'Sopen05g006630' => 'spe', 'Sopen06g032720' => 'spe', 'Sopen09g005660' => 'spe', 'Sopen09g030690' => 'spe', 'Sp4g14540' => 'spa', 'Sp4g20030' => 'spa', 'Sp5g01320' => 'spa', 'Sp6g21170' => 'spa', 'Sp6g21180' => 'spa', 'Sp6g21190' => 'spa', 'Sp6g40220' => 'spa', 'TAR362G0122' => 'tar', 'TAR362G1338' => 'tar', 'TAR369G0590' => 'tar', 'TAR371G0824' => 'tar', 'TAR622G1429' => 'tar', 'TAR623G0734' => 'tar', 'TAR625G0441' => 'tar', 'TAR629G0976' => 'tar', 'TAR633G1195' => 'tar', 'TAR636G2660' => 'tar', 'THA.LOC104799440' => 'tha', 'THA.LOC104800966' => 'tha', 'THA.LOC104806559' => 'tha', 'THA.LOC104810765' => 'tha', 'THA.LOC104816266' => 'tha', 'THA.LOC104817419' => 'tha', 'THA.LOC104827021' => 'tha', 'Thecc.01G327400' => 'tca', 'Thecc.04G229200' => 'tca', 'Thecc.05G037400' => 'tca', 'Thecc.09G318600' => 'tca', 'Thecc.09G318700' => 'tca', 'Thhalv10006238m.g' => 'esa', 'Thhalv10014321m.g' => 'esa', 'Thhalv10014335m.g' => 'esa', 'Thhalv10015826m.g' => 'esa', 'Thhalv10017107m.g' => 'esa', 'Thhalv10017180m.g' => 'esa', 'Thhalv10029339m.g' => 'esa', 'TPR.G1699' => 'tpr', 'TPR.G23609' => 'tpr', 'TPR.G3081' => 'tpr', 'TPR.G40397' => 'tpr', 'TPR.G5522' => 'tpr', 'TPR.G5618' => 'tpr', 'TPR.G5626' => 'tpr', 'TWI09G1632' => 'twi', 'TWI23G1230' => 'twi', 'TWI53G1064' => 'twi', 'TWI59G0751' => 'twi', 'TWI74G0947' => 'twi', 'TWI77G0337' => 'twi', 'TWI79G1254' => 'twi', 'unitig_0.g2341' => 'ugi', 'unitig_26.g10006' => 'ugi', 'unitig_26.g10008' => 'ugi', 'unitig_26.g9192' => 'ugi', 'vmacro14547' => 'vma', 'vmacro15333' => 'vma', 'vmacro18743' => 'vma', 'vmacro20166' => 'vma', 'VMungo0331G0523' => 'vmu', 'VMungo0331G1202' => 'vmu', 'VMungo0720G1228' => 'vmu', 'VMungo0720G1514' => 'vmu', 'VMungo1080G0169' => 'vmu', 'VMungo1127G1475' => 'vmu', 'VMungo1383G1208' => 'vmu', 'VMungo1383G1698' => 'vmu', 'Zm00001eb012270' => 'zma', 'Zm00001eb054100' => 'zma', 'Zm00001eb063350' => 'zma', 'Zm00001eb328560' => 'zma', 'Zm00001eb342820' => 'zma', 'Zm00001eb362210' => 'zma', 'Zm00001eb397730' => 'zma', 'Zm00001eb399750' => 'zma' ) $gf_id = 'HOM05D000959' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000959' ) $data_identifier = 'HOM05D000959' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 5, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 5, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 10, 'mbi' => (int) 3, 'mco' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 2, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 3, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 11, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399750' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000959', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '622', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p07100' => 'bna', 'A03p11720' => 'bna', 'A05p08300' => 'bna', 'A05p13380' => 'bna', 'A09p54130' => 'bna', 'A10p16690' => 'bna', 'A10p16700' => 'bna', 'A10p33390' => 'bna', 'Aa31LG10G16020' => 'aar', 'Aa31LG1G11810' => 'aar', 'Aa31LG1G11830' => 'aar', 'Aa31LG1G22510' => 'aar', 'Aa31LG5G4890' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5793' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2310' => 'aag', 'Actinidia08499' => 'ach', 'Actinidia11262' => 'ach', 'Actinidia23926' => 'ach', 'Actinidia34420' => 'ach', 'Actinidia36970' => 'ach', 'Ah.02g111220' => 'amhyb', 'Ah.15g097750' => 'amhyb', 'AL4G27500' => 'aly', 'AL6G11470' => 'aly', 'AL8G35950' => 'aly', 'AL8G35960' => 'aly', 'AL8G35970' => 'aly', 'Aqoxy1G00912' => 'aox', 'Aqoxy2G02253' => 'aox', 'Aqoxy2G02411' => 'aox', 'Aqoxy5G00485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BZ66YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K8ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM4FUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6BF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HFV7XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25JBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0YNNV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MAKK6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P70IT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP2Z6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V61LZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YWP64R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3S9AI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7PGHH' => 'arhy', 'AT2G32150' => 'ath', 'AT3G62040' => 'ath', 'AT5G02230' => 'ath', 'AT5G59480' => 'ath', 'AT5G59490' => 'ath', 'ATR0332G060' => 'atr', 'ATR0559G190' => 'atr', 'ATR0693G294' => 'atr', 'Atru.chr3.3975' => 'acertr', 'Atru.chr3.3976' => 'acertr', 'Atru.chr3.3977' => 'acertr', 'Atru.chr4.2498' => 'acertr', 'Atru.chr5.838' => 'acertr', 'Atru.chr8.1990' => 'acertr', 'Atru.chr8.1991' => 'acertr', 'Atru.chr8.1992' => 'acertr', 'AUR62001759' => 'cqu', 'AUR62009545' => 'cqu', 'AUR62010474' => 'cqu', 'AUR62025820' => 'cqu', 'AUR62030422' => 'cqu', 'AUR62033605' => 'cqu', 'AUR62038615' => 'cqu', 'AUR62041347' => 'cqu', 'BcaB01g04574' => 'bca', 'BcaB02g09263' => 'bca', 'BcaB02g10453' => 'bca', 'BcaB05g22513' => 'bca', 'BcaB08g36253' => 'bca', 'BcaB08g36254' => 'bca', 'BcaC01g06519' => 'bca', 'BcaC02g11889' => 'bca', 'BcaC03g14010' => 'bca', 'BcaC03g18439' => 'bca', 'BcaC04g19765' => 'bca', 'BcaC09g48432' => 'bca', 'BcaNung07302' => 'bca', 'BolC2t06040H' => 'bol', 'BolC2t07346H' => 'bol', 'BolC3t13817H' => 'bol', 'BolC4t22625H' => 'bol', 'BolC4t23297H' => 'bol', 'BolC8t51278H' => 'bol', 'BolC9t58050H' => 'bol', 'BolC9t58051H' => 'bol', 'BolC9t60163H' => 'bol', 'BraA02t04712Z' => 'bra', 'BraA02t05791Z' => 'bra', 'BraA03t10483Z' => 'bra', 'BraA05t19795Z' => 'bra', 'BraA05t20276Z' => 'bra', 'BraA09t40827Z' => 'bra', 'BraA10t43750Z' => 'bra', 'BraA10t43751Z' => 'bra', 'BraA10t45370Z' => 'bra', 'C02p00400' => 'bna', 'C02p12460' => 'bna', 'C03p13680' => 'bna', 'C04p10270' => 'bna', 'C04p17500' => 'bna', 'C08p37010' => 'bna', 'C09p51880' => 'bna', 'C09p51890' => 'bna', 'C09p74300' => 'bna', 'CAN.G179.26' => 'can', 'CAN.G3384.1' => 'can', 'CAN.G394.68' => 'can', 'CAN.G907.13' => 'can', 'CANSAT11G0012' => 'cansat', 'CANSAT25G1586' => 'cansat', 'CANSAT35G0735' => 'cansat', 'CANSAT54G0556' => 'cansat', 'CANSAT64G0356' => 'cansat', 'CANSAT78G2042' => 'cansat', 'CARHR125920' => 'chi', 'CARHR131910' => 'chi', 'CARHR172390' => 'chi', 'CARHR211140' => 'chi', 'CARHR285850' => 'chi', 'CARHR285860' => 'chi', 'Carub.0004s1347' => 'cru', 'Carub.0004s1960' => 'cru', 'Carub.0005s2880' => 'cru', 'Carub.0006s0107' => 'cru', 'Carub.0008s2015' => 'cru', 'Carub.0008s2016' => 'cru', 'Carub.0008s2017' => 'cru', 'Ca_01315_v3' => 'car', 'Ca_05063_v3' => 'car', 'Ca_10231_v3' => 'car', 'Ca_10913_v3' => 'car', 'Ca_19156_v3' => 'car', 'Ca_23644_v3' => 'car', 'Ca_26735_v3' => 'car', 'Cc01_g13130' => 'ccan', 'Cc02_g21690' => 'ccan', 'Cc03_g03600' => 'ccan', 'Cc06_g02510' => 'ccan', 'CDE02G1265' => 'cde', 'CDE05G0415' => 'cde', 'CDE08G1082' => 'cde', 'Cfa005780' => 'cfa', 'Cfa011522' => 'cfa', 'Cfa011523' => 'cfa', 'Cfa015627' => 'cfa', 'Cfa017359' => 'cfa', 'Ciclev10005687m.g' => 'ccl', 'Ciclev10012173m.g' => 'ccl', 'Ciclev10021621m.g' => 'ccl', 'Ciclev10028968m.g' => 'ccl', 'Ciclev10029907m.g' => 'ccl', 'CiPaw.01G164800' => 'cil', 'CiPaw.07G083700' => 'cil', 'CiPaw.07G127000' => 'cil', 'CiPaw.07G136900' => 'cil', 'CiPaw.08G081700' => 'cil', 'CiPaw.09G194600' => 'cil', 'CiPaw.10G146500' => 'cil', 'CiPaw.13G091500' => 'cil', 'CiPaw.13G091600' => 'cil', 'ClCG00G003390' => 'cla', 'ClCG01G007220' => 'cla', 'ClCG03G001370' => 'cla', 'ClCG04G008100' => 'cla', 'ClCG06G006110' => 'cla', 'ClCG06G006130' => 'cla', 'ClCG10G021210' => 'cla', 'COL.COLO4_07648' => 'col', 'COL.COLO4_07650' => 'col', 'COL.COLO4_07651' => 'col', 'COL.COLO4_14780' => 'col', 'COL.COLO4_18546' => 'col', 'COL.COLO4_18547' => 'col', 'COL.COLO4_23103' => 'col', 'COL.COLO4_30419' => 'col', 'COL.COLO4_34232' => 'col', 'Cpa.g.sc169.20' => 'cpa', 'Cpa.g.sc57.45' => 'cpa', 'Cpa.g.sc58.124' => 'cpa', 'Cpa.g.sc58.125' => 'cpa', 'Cpa.g.sc81.118' => 'cpa', 'Cpa.g.sc81.119' => 'cpa', 'Cre12.g524700' => 'cre', 'CsaV3_1G034430' => 'csa', 'CsaV3_1G034440' => 'csa', 'CsaV3_1G034450' => 'csa', 'CsaV3_3G034830' => 'csa', 'CsaV3_4G025090' => 'csa', 'CsaV3_5G018660' => 'csa', 'CsaV3_6G038160' => 'csa', 'CSS0003447' => 'camsi', 'CSS0017840' => 'camsi', 'CSS0019260' => 'camsi', 'CSS0040375' => 'camsi', 'CSS0042533' => 'camsi', 'DCAR_005960' => 'dca', 'DCAR_012104' => 'dca', 'DCAR_012105' => 'dca', 'DCAR_012293' => 'dca', 'DCAR_015632' => 'dca', 'DCAR_024602' => 'dca', 'DCAR_028752' => 'dca', 'Dinv06261' => 'din', 'Dinv13982' => 'din', 'Dinv17029' => 'din', 'Dinv18463' => 'din', 'Dinv33181' => 'din', 'Dinv35585' => 'din', 'Dinv37161' => 'din', 'Dinv42977' => 'din', 'Dinv43122' => 'din', 'Dinv44517' => 'din', 'Duzib093G0256' => 'dzi', 'Duzib106G1254' => 'dzi', 'Duzib128G1789' => 'dzi', 'Duzib133G0633' => 'dzi', 'Duzib138G0510' => 'dzi', 'Duzib150G1084' => 'dzi', 'Duzib168G0488' => 'dzi', 'Duzib168G1523' => 'dzi', 'Duzib170G0133' => 'dzi', 'ECA234G1433' => 'eca', 'ECA236G1432' => 'eca', 'ECA236G2256' => 'eca', 'ECA236G2365' => 'eca', 'ECA236G4830' => 'eca', 'ECA248G1505' => 'eca', 'EL10Ac3g06431' => 'bvu', 'EL10Ac5g12577' => 'bvu', 'EL10Ac6g13533' => 'bvu', 'EL10Ac7g16045' => 'bvu', 'Eucgr.A01281' => 'egr', 'Eucgr.B02326' => 'egr', 'Eucgr.H03532' => 'egr', 'Eucgr.K00553' => 'egr', 'Eucgr.K03116' => 'egr', 'FAN02G3963' => 'fan', 'FAN05G0438' => 'fan', 'FAN09G2434' => 'fan', 'FAN12G3984' => 'fan', 'FAN14G0798' => 'fan', 'FAN17G0652' => 'fan', 'FAN19G1988' => 'fan', 'FAN22G0632' => 'fan', 'FAN23G0387' => 'fan', 'FAN26G1323' => 'fan', 'FAN28G0666' => 'fan', 'FvH4_1g26080' => 'fve', 'FvH4_3g36780' => 'fve', 'FvH4_4g15270' => 'fve', 'FvH4_6g13490' => 'fve', 'Glyma.01G098700' => 'gma', 'Glyma.03G065900' => 'gma', 'Glyma.03G073754' => 'gma', 'Glyma.03G073758' => 'gma', 'Glyma.03G083200' => 'gma', 'Glyma.03G225500' => 'gma', 'Glyma.05G037766' => 'gma', 'Glyma.07G133500' => 'gma', 'Glyma.10G139400' => 'gma', 'Glyma.10G248900' => 'gma', 'Glyma.11G137800' => 'gma', 'Glyma.12G061300' => 'gma', 'Glyma.13G337900' => 'gma', 'Glyma.15G036600' => 'gma', 'Glyma.18G182800' => 'gma', 'Glyma.19G222500' => 'gma', 'Glyma.20G144800' => 'gma', 'Gohir.A01G222000' => 'ghi', 'Gohir.A03G044000' => 'ghi', 'Gohir.A03G044100' => 'ghi', 'Gohir.A04G083100' => 'ghi', 'Gohir.A07G127200' => 'ghi', 'Gohir.A07G132400' => 'ghi', 'Gohir.A08G000700' => 'ghi', 'Gohir.A11G327300' => 'ghi', 'Gohir.D01G211500' => 'ghi', 'Gohir.D03G123400' => 'ghi', 'Gohir.D03G123500' => 'ghi', 'Gohir.D04G121800' => 'ghi', 'Gohir.D07G131500' => 'ghi', 'Gohir.D07G136600' => 'ghi', 'Gohir.D08G011600' => 'ghi', 'Gohir.D11G346200' => 'ghi', 'Gorai.001G142800' => 'gra', 'Gorai.001G148700' => 'gra', 'Gorai.002G257300' => 'gra', 'Gorai.003G130000' => 'gra', 'Gorai.003G130100' => 'gra', 'Gorai.004G005300' => 'gra', 'Gorai.007G376500' => 'gra', 'Gorai.012G104700' => 'gra', 'GSVIVG01017946001' => 'vvi', 'GSVIVG01024928001' => 'vvi', 'GSVIVG01028227001' => 'vvi', 'GSVIVG01034151001' => 'vvi', 'HanXRQChr05g0135031' => 'han', 'HanXRQChr05g0135041' => 'han', 'HanXRQChr05g0140021' => 'han', 'HanXRQChr06g0178981' => 'han', 'HanXRQChr07g0188251' => 'han', 'HanXRQChr08g0235311' => 'han', 'HanXRQChr09g0271011' => 'han', 'HanXRQChr10g0293321' => 'han', 'HanXRQChr13g0388171' => 'han', 'Haze_00916' => 'cav', 'Haze_05063' => 'cav', 'Haze_20814' => 'cav', 'Haze_24128' => 'cav', 'Hma1.2p1_0745F.1_g212010' => 'hma', 'Hma1.2p1_0757F.1_g213260' => 'hma', 'Hma1.2p1_0936F.1_g238840' => 'hma', 'Hma1.2p1_1735F.1_g299890' => 'hma', 'Hma1.2p1_1861F.1_g305685' => 'hma', 'HPP92_003397' => 'vpl', 'HPP92_012597' => 'vpl', 'HPP92_015520' => 'vpl', 'HPP92_015539' => 'vpl', 'HPP92_020373' => 'vpl', 'Hund04938' => 'sun', 'Hund10677' => 'sun', 'Hund11033' => 'sun', 'Hund12155' => 'sun', 'Lalb_Chr01g0022551' => 'lal', 'Lalb_Chr03g0042341' => 'lal', 'Lalb_Chr07g0192931' => 'lal', 'Lalb_Chr12g0209551' => 'lal', 'Lalb_Chr19g0125251' => 'lal', 'Lalb_Chr19g0137891' => 'lal', 'Lalb_Chr21g0304641' => 'lal', 'Lalb_Chr21g0309881' => 'lal', 'Lj1A5T12' => 'lonja', 'Lj1C148G10' => 'lonja', 'Lj2A93T83' => 'lonja', 'Lj3A738G68' => 'lonja', 'Lj3C966T1' => 'lonja', 'Lj3g0018958' => 'lja', 'Lj3g0021831' => 'lja', 'Lj3g0025443' => 'lja', 'Lj4g0026809' => 'lja', 'Lj5g0012558' => 'lja', 'Lj5g0021586' => 'lja', 'Lsat_1_v5_gn_5_156840' => 'lsa', 'Lsat_1_v5_gn_8_73460' => 'lsa', 'Lsat_1_v5_gn_8_73481' => 'lsa', 'Lsat_1_v5_gn_9_31601' => 'lsa', 'Lsat_1_v5_gn_9_77320' => 'lsa', 'Manes.01G171300' => 'mes', 'Manes.01G171400' => 'mes', 'Manes.01G236100' => 'mes', 'Manes.02G130500' => 'mes', 'Manes.02G130600' => 'mes', 'Manes.03G180200' => 'mes', 'Manes.05G007000' => 'mes', 'Manes.08G084400' => 'mes', 'Manes.09G092600' => 'mes', 'Manes.15G027900' => 'mes', 'MBI04_g40948_MAGBIO' => 'mbi', 'MBI14_g12123_MAGBIO' => 'mbi', 'MBI18_g28915_MAGBIO' => 'mbi', 'MCO09G053' => 'mco', 'MCO11G782' => 'mco', 'MCO15G215' => 'mco', 'MD03G1088500' => 'mdo', 'MD03G1088600' => 'mdo', 'MD04G1130800' => 'mdo', 'MD09G1291700' => 'mdo', 'MD11G1097500' => 'mdo', 'MD11G1097600' => 'mdo', 'MD12G1143900' => 'mdo', 'MD13G1191400' => 'mdo', 'MD16G1191500' => 'mdo', 'Medtr1g085570' => 'mtr', 'Medtr1g104610' => 'mtr', 'Medtr2g097520' => 'mtr', 'Medtr4g021800' => 'mtr', 'Medtr4g021825' => 'mtr', 'Medtr4g064270' => 'mtr', 'Medtr4g064380' => 'mtr', 'Medtr7g062150' => 'mtr', 'MELO3C003138.2' => 'cme', 'MELO3C005187.2' => 'cme', 'MELO3C009252.2' => 'cme', 'MELO3C014481.2' => 'cme', 'MELO3C020616.2' => 'cme', 'MELO3C020617.2' => 'cme', 'MELO3C020618.2' => 'cme', 'Migut.G00328' => 'egut', 'Migut.J00320' => 'egut', 'Migut.L01000' => 'egut', 'Migut.L01953' => 'egut', 'MSTRG.10253' => 'ama', 'MSTRG.19077' => 'ama', 'MSTRG.26780' => 'ama', 'MSTRG.4023' => 'ama', 'MSTRG.5655' => 'ama', 'MSTRG.9992' => 'ama', 'Nitab4.5_0000043g0310' => 'nta', 'Nitab4.5_0000463g0080' => 'nta', 'Nitab4.5_0000705g0170' => 'nta', 'Nitab4.5_0001326g0060' => 'nta', 'Nitab4.5_0001628g0030' => 'nta', 'Nitab4.5_0002103g0110' => 'nta', 'Nitab4.5_0002946g0030' => 'nta', 'Nitab4.5_0004639g0030' => 'nta', 'Nn2g11149' => 'nnu', 'Nn2g13389' => 'nnu', 'Nn4g25326' => 'nnu', 'Nn4g26290' => 'nnu', 'Nn5g29865' => 'nnu', 'Oeu004163.1' => 'oeu', 'Oeu006901.1' => 'oeu', 'Oeu010096.1' => 'oeu', 'Oeu024340.1' => 'oeu', 'Oeu048369.1' => 'oeu', 'Os01g0973000' => 'osa', 'Os03g0273800' => 'osa', 'Os03g0701200' => 'osa', 'Os03g0834050' => 'osa', 'Os07g0634400' => 'osa', 'Peaxi162Scf00092g01414' => 'pax', 'Peaxi162Scf00165g00818' => 'pax', 'Peaxi162Scf00309g00516' => 'pax', 'Peaxi162Scf00774g00218' => 'pax', 'PGR004G1824' => 'pgr', 'PGR004G2606' => 'pgr', 'PGR031G2716' => 'pgr', 'PGR102G2460' => 'pgr', 'PGR142G2599' => 'pgr', 'PGSC0003DMG400000843' => 'stu', 'PGSC0003DMG400008829' => 'stu', 'PGSC0003DMG400030418' => 'stu', 'PGSC0003DMG400031834' => 'stu', 'PGSC0003DMG401028300' => 'stu', 'PGSC0003DMG402028300' => 'stu', 'Phvul.001G219300' => 'pvu', 'Phvul.007G056000' => 'pvu', 'Phvul.007G208000' => 'pvu', 'Phvul.008G119500' => 'pvu', 'Phvul.010G011200' => 'pvu', 'Phvul.010G014800' => 'pvu', 'Phvul.011G062900' => 'pvu', 'Phvul.L007043' => 'pvu', 'Potri.001G242300' => 'ptr', 'Potri.002G185300' => 'ptr', 'Potri.006G086900' => 'ptr', 'Potri.008G151700' => 'ptr', 'Potri.009G033500' => 'ptr', 'Potri.010G089300' => 'ptr', 'Potri.014G110800' => 'ptr', 'Pp3c27_8130' => 'ppa', 'Pp3c6_27410' => 'ppa', 'PRCOL_00001659' => 'pco', 'PRCOL_00001927' => 'pco', 'PRCOL_00003649' => 'pco', 'Prupe.1G011600' => 'ppe', 'Prupe.3G000800' => 'ppe', 'Prupe.3G001100' => 'ppe', 'Prupe.6G072700' => 'ppe', 'Prupe.6G072800' => 'ppe', 'Prupe.6G257300' => 'ppe', 'Prupe.8G033000' => 'ppe', 'Psat0s2633g0080' => 'psa', 'Psat0s3396g0080' => 'psa', 'Psat0s3396g0200' => 'psa', 'Psat3g139080' => 'psa', 'Psat5g285080' => 'psa', 'Psat6g157760' => 'psa', 'Psat6g208440' => 'psa', 'Psat7g215320' => 'psa', 'Psat7g215400' => 'psa', 'Psat7g235600' => 'psa', 'Psat7g235760' => 'psa', 'PSO063G4603' => 'pso', 'PSO210G0182' => 'pso', 'PSO210G0196' => 'pso', 'PSO339G0394' => 'pso', 'PSO339G4127' => 'pso', 'PSO513G0064' => 'pso', 'PSO761G0079' => 'pso', 'QL01p031003' => 'qlo', 'QL01p031078' => 'qlo', 'QL06p003004' => 'qlo', 'QL07p048731' => 'qlo', 'QL09p037427' => 'qlo', 'RcHm_v2.0_Chr3g0466361' => 'rch', 'RcHm_v2.0_Chr3g0485571' => 'rch', 'RcHm_v2.0_Chr4g0416551' => 'rch', 'RcHm_v2.0_Chr5g0065831' => 'rch', 'Rhsim01G0230500' => 'rsi', 'Rhsim05G0194000' => 'rsi', 'Rhsim08G0250400' => 'rsi', 'Sabra02G0131000' => 'sbr', 'Sabra06G0066300' => 'sbr', 'Sabra08G0115500' => 'sbr', 'Sabra09G0023900' => 'sbr', 'Sabra10G0054000' => 'sbr', 'Sabra14G0081500' => 'sbr', 'Sabra16G0147100' => 'sbr', 'SalBow2G2957' => 'sbo', 'SalBow4G3320' => 'sbo', 'SalBow8G1894' => 'sbo', 'Sc07g0007950' => 'sci', 'Sc12g0001360' => 'sci', 'Sc13g0004330' => 'sci', 'Sc20g0005010' => 'sci', 'Sed0000361' => 'sed', 'Sed0001706' => 'sed', 'Sed0002422' => 'sed', 'Sed0004029' => 'sed', 'Sed0004602' => 'sed', 'Sed0004943' => 'sed', 'Sed0008646' => 'sed', 'Sed0023313' => 'sed', 'Sed0024843' => 'sed', 'SEGI_00081' => 'sgi', 'SEGI_00947' => 'sgi', 'SEGI_04046' => 'sgi', 'SEGI_06880' => 'sgi', 'SEGI_09736' => 'sgi', 'SEGI_12741' => 'sgi', 'SEGI_14530' => 'sgi', 'SEGI_20705' => 'sgi', 'SEGI_26088' => 'sgi', 'SEGI_28323' => 'sgi', 'SEGI_33343' => 'sgi', 'SGA_v2.0_scaffold126G33775' => 'sas', 'SGA_v2.0_scaffold2G01337' => 'sas', 'SGA_v2.0_scaffold38G15006' => 'sas', 'SGA_v2.0_scaffold39G15264' => 'sas', 'SGA_v2.0_scaffold453G51880' => 'sas', 'SHI12696' => 'shi', 'SMO367G1096' => 'smo', 'Solyc01g068630.3' => 'sly', 'Solyc05g011880.3' => 'sly', 'Solyc06g076300.3' => 'sly', 'Solyc09g010940.4' => 'sly', 'Solyc09g075890.3' => 'sly', 'Sopen01g030560' => 'spe', 'Sopen05g006630' => 'spe', 'Sopen06g032720' => 'spe', 'Sopen09g005660' => 'spe', 'Sopen09g030690' => 'spe', 'Sp4g14540' => 'spa', 'Sp4g20030' => 'spa', 'Sp5g01320' => 'spa', 'Sp6g21170' => 'spa', 'Sp6g21180' => 'spa', 'Sp6g21190' => 'spa', 'Sp6g40220' => 'spa', 'TAR362G0122' => 'tar', 'TAR362G1338' => 'tar', 'TAR369G0590' => 'tar', 'TAR371G0824' => 'tar', 'TAR622G1429' => 'tar', 'TAR623G0734' => 'tar', 'TAR625G0441' => 'tar', 'TAR629G0976' => 'tar', 'TAR633G1195' => 'tar', 'TAR636G2660' => 'tar', 'THA.LOC104799440' => 'tha', 'THA.LOC104800966' => 'tha', 'THA.LOC104806559' => 'tha', 'THA.LOC104810765' => 'tha', 'THA.LOC104816266' => 'tha', 'THA.LOC104817419' => 'tha', 'THA.LOC104827021' => 'tha', 'Thecc.01G327400' => 'tca', 'Thecc.04G229200' => 'tca', 'Thecc.05G037400' => 'tca', 'Thecc.09G318600' => 'tca', 'Thecc.09G318700' => 'tca', 'Thhalv10006238m.g' => 'esa', 'Thhalv10014321m.g' => 'esa', 'Thhalv10014335m.g' => 'esa', 'Thhalv10015826m.g' => 'esa', 'Thhalv10017107m.g' => 'esa', 'Thhalv10017180m.g' => 'esa', 'Thhalv10029339m.g' => 'esa', 'TPR.G1699' => 'tpr', 'TPR.G23609' => 'tpr', 'TPR.G3081' => 'tpr', 'TPR.G40397' => 'tpr', 'TPR.G5522' => 'tpr', 'TPR.G5618' => 'tpr', 'TPR.G5626' => 'tpr', 'TWI09G1632' => 'twi', 'TWI23G1230' => 'twi', 'TWI53G1064' => 'twi', 'TWI59G0751' => 'twi', 'TWI74G0947' => 'twi', 'TWI77G0337' => 'twi', 'TWI79G1254' => 'twi', 'unitig_0.g2341' => 'ugi', 'unitig_26.g10006' => 'ugi', 'unitig_26.g10008' => 'ugi', 'unitig_26.g9192' => 'ugi', 'vmacro14547' => 'vma', 'vmacro15333' => 'vma', 'vmacro18743' => 'vma', 'vmacro20166' => 'vma', 'VMungo0331G0523' => 'vmu', 'VMungo0331G1202' => 'vmu', 'VMungo0720G1228' => 'vmu', 'VMungo0720G1514' => 'vmu', 'VMungo1080G0169' => 'vmu', 'VMungo1127G1475' => 'vmu', 'VMungo1383G1208' => 'vmu', 'VMungo1383G1698' => 'vmu', 'Zm00001eb012270' => 'zma', 'Zm00001eb054100' => 'zma', 'Zm00001eb063350' => 'zma', 'Zm00001eb328560' => 'zma', 'Zm00001eb342820' => 'zma', 'Zm00001eb362210' => 'zma', 'Zm00001eb397730' => 'zma', 'Zm00001eb399750' => 'zma' ), 'gf_id' => 'HOM05D000959', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000959' ), 'data_identifier' => 'HOM05D000959', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000959', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '622', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p07100' => 'bna', 'A03p11720' => 'bna', 'A05p08300' => 'bna', 'A05p13380' => 'bna', 'A09p54130' => 'bna', 'A10p16690' => 'bna', 'A10p16700' => 'bna', 'A10p33390' => 'bna', 'Aa31LG10G16020' => 'aar', 'Aa31LG1G11810' => 'aar', 'Aa31LG1G11830' => 'aar', 'Aa31LG1G22510' => 'aar', 'Aa31LG5G4890' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5793' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2310' => 'aag', 'Actinidia08499' => 'ach', 'Actinidia11262' => 'ach', 'Actinidia23926' => 'ach', 'Actinidia34420' => 'ach', 'Actinidia36970' => 'ach', 'Ah.02g111220' => 'amhyb', 'Ah.15g097750' => 'amhyb', 'AL4G27500' => 'aly', 'AL6G11470' => 'aly', 'AL8G35950' => 'aly', 'AL8G35960' => 'aly', 'AL8G35970' => 'aly', 'Aqoxy1G00912' => 'aox', 'Aqoxy2G02253' => 'aox', 'Aqoxy2G02411' => 'aox', 'Aqoxy5G00485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BZ66YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K8ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM4FUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6BF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HFV7XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25JBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0YNNV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MAKK6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P70IT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP2Z6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V61LZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YWP64R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3S9AI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7PGHH' => 'arhy', 'AT2G32150' => 'ath', 'AT3G62040' => 'ath', 'AT5G02230' => 'ath', 'AT5G59480' => 'ath', 'AT5G59490' => 'ath', 'ATR0332G060' => 'atr', 'ATR0559G190' => 'atr', 'ATR0693G294' => 'atr', 'Atru.chr3.3975' => 'acertr', 'Atru.chr3.3976' => 'acertr', 'Atru.chr3.3977' => 'acertr', 'Atru.chr4.2498' => 'acertr', 'Atru.chr5.838' => 'acertr', 'Atru.chr8.1990' => 'acertr', 'Atru.chr8.1991' => 'acertr', 'Atru.chr8.1992' => 'acertr', 'AUR62001759' => 'cqu', 'AUR62009545' => 'cqu', 'AUR62010474' => 'cqu', 'AUR62025820' => 'cqu', 'AUR62030422' => 'cqu', 'AUR62033605' => 'cqu', 'AUR62038615' => 'cqu', 'AUR62041347' => 'cqu', 'BcaB01g04574' => 'bca', 'BcaB02g09263' => 'bca', 'BcaB02g10453' => 'bca', 'BcaB05g22513' => 'bca', 'BcaB08g36253' => 'bca', 'BcaB08g36254' => 'bca', 'BcaC01g06519' => 'bca', 'BcaC02g11889' => 'bca', 'BcaC03g14010' => 'bca', 'BcaC03g18439' => 'bca', 'BcaC04g19765' => 'bca', 'BcaC09g48432' => 'bca', 'BcaNung07302' => 'bca', 'BolC2t06040H' => 'bol', 'BolC2t07346H' => 'bol', 'BolC3t13817H' => 'bol', 'BolC4t22625H' => 'bol', 'BolC4t23297H' => 'bol', 'BolC8t51278H' => 'bol', 'BolC9t58050H' => 'bol', 'BolC9t58051H' => 'bol', 'BolC9t60163H' => 'bol', 'BraA02t04712Z' => 'bra', 'BraA02t05791Z' => 'bra', 'BraA03t10483Z' => 'bra', 'BraA05t19795Z' => 'bra', 'BraA05t20276Z' => 'bra', 'BraA09t40827Z' => 'bra', 'BraA10t43750Z' => 'bra', 'BraA10t43751Z' => 'bra', 'BraA10t45370Z' => 'bra', 'C02p00400' => 'bna', 'C02p12460' => 'bna', 'C03p13680' => 'bna', 'C04p10270' => 'bna', 'C04p17500' => 'bna', 'C08p37010' => 'bna', 'C09p51880' => 'bna', 'C09p51890' => 'bna', 'C09p74300' => 'bna', 'CAN.G179.26' => 'can', 'CAN.G3384.1' => 'can', 'CAN.G394.68' => 'can', 'CAN.G907.13' => 'can', 'CANSAT11G0012' => 'cansat', 'CANSAT25G1586' => 'cansat', 'CANSAT35G0735' => 'cansat', 'CANSAT54G0556' => 'cansat', 'CANSAT64G0356' => 'cansat', 'CANSAT78G2042' => 'cansat', 'CARHR125920' => 'chi', 'CARHR131910' => 'chi', 'CARHR172390' => 'chi', 'CARHR211140' => 'chi', 'CARHR285850' => 'chi', 'CARHR285860' => 'chi', 'Carub.0004s1347' => 'cru', 'Carub.0004s1960' => 'cru', 'Carub.0005s2880' => 'cru', 'Carub.0006s0107' => 'cru', 'Carub.0008s2015' => 'cru', 'Carub.0008s2016' => 'cru', 'Carub.0008s2017' => 'cru', 'Ca_01315_v3' => 'car', 'Ca_05063_v3' => 'car', 'Ca_10231_v3' => 'car', 'Ca_10913_v3' => 'car', 'Ca_19156_v3' => 'car', 'Ca_23644_v3' => 'car', 'Ca_26735_v3' => 'car', 'Cc01_g13130' => 'ccan', 'Cc02_g21690' => 'ccan', 'Cc03_g03600' => 'ccan', 'Cc06_g02510' => 'ccan', 'CDE02G1265' => 'cde', 'CDE05G0415' => 'cde', 'CDE08G1082' => 'cde', 'Cfa005780' => 'cfa', 'Cfa011522' => 'cfa', 'Cfa011523' => 'cfa', 'Cfa015627' => 'cfa', 'Cfa017359' => 'cfa', 'Ciclev10005687m.g' => 'ccl', 'Ciclev10012173m.g' => 'ccl', 'Ciclev10021621m.g' => 'ccl', 'Ciclev10028968m.g' => 'ccl', 'Ciclev10029907m.g' => 'ccl', 'CiPaw.01G164800' => 'cil', 'CiPaw.07G083700' => 'cil', 'CiPaw.07G127000' => 'cil', 'CiPaw.07G136900' => 'cil', 'CiPaw.08G081700' => 'cil', 'CiPaw.09G194600' => 'cil', 'CiPaw.10G146500' => 'cil', 'CiPaw.13G091500' => 'cil', 'CiPaw.13G091600' => 'cil', 'ClCG00G003390' => 'cla', 'ClCG01G007220' => 'cla', 'ClCG03G001370' => 'cla', 'ClCG04G008100' => 'cla', 'ClCG06G006110' => 'cla', 'ClCG06G006130' => 'cla', 'ClCG10G021210' => 'cla', 'COL.COLO4_07648' => 'col', 'COL.COLO4_07650' => 'col', 'COL.COLO4_07651' => 'col', 'COL.COLO4_14780' => 'col', 'COL.COLO4_18546' => 'col', 'COL.COLO4_18547' => 'col', 'COL.COLO4_23103' => 'col', 'COL.COLO4_30419' => 'col', 'COL.COLO4_34232' => 'col', 'Cpa.g.sc169.20' => 'cpa', 'Cpa.g.sc57.45' => 'cpa', 'Cpa.g.sc58.124' => 'cpa', 'Cpa.g.sc58.125' => 'cpa', 'Cpa.g.sc81.118' => 'cpa', 'Cpa.g.sc81.119' => 'cpa', 'Cre12.g524700' => 'cre', 'CsaV3_1G034430' => 'csa', 'CsaV3_1G034440' => 'csa', 'CsaV3_1G034450' => 'csa', 'CsaV3_3G034830' => 'csa', 'CsaV3_4G025090' => 'csa', 'CsaV3_5G018660' => 'csa', 'CsaV3_6G038160' => 'csa', 'CSS0003447' => 'camsi', 'CSS0017840' => 'camsi', 'CSS0019260' => 'camsi', 'CSS0040375' => 'camsi', 'CSS0042533' => 'camsi', 'DCAR_005960' => 'dca', 'DCAR_012104' => 'dca', 'DCAR_012105' => 'dca', 'DCAR_012293' => 'dca', 'DCAR_015632' => 'dca', 'DCAR_024602' => 'dca', 'DCAR_028752' => 'dca', 'Dinv06261' => 'din', 'Dinv13982' => 'din', 'Dinv17029' => 'din', 'Dinv18463' => 'din', 'Dinv33181' => 'din', 'Dinv35585' => 'din', 'Dinv37161' => 'din', 'Dinv42977' => 'din', 'Dinv43122' => 'din', 'Dinv44517' => 'din', 'Duzib093G0256' => 'dzi', 'Duzib106G1254' => 'dzi', 'Duzib128G1789' => 'dzi', 'Duzib133G0633' => 'dzi', 'Duzib138G0510' => 'dzi', 'Duzib150G1084' => 'dzi', 'Duzib168G0488' => 'dzi', 'Duzib168G1523' => 'dzi', 'Duzib170G0133' => 'dzi', 'ECA234G1433' => 'eca', 'ECA236G1432' => 'eca', 'ECA236G2256' => 'eca', 'ECA236G2365' => 'eca', 'ECA236G4830' => 'eca', 'ECA248G1505' => 'eca', 'EL10Ac3g06431' => 'bvu', 'EL10Ac5g12577' => 'bvu', 'EL10Ac6g13533' => 'bvu', 'EL10Ac7g16045' => 'bvu', 'Eucgr.A01281' => 'egr', 'Eucgr.B02326' => 'egr', 'Eucgr.H03532' => 'egr', 'Eucgr.K00553' => 'egr', 'Eucgr.K03116' => 'egr', 'FAN02G3963' => 'fan', 'FAN05G0438' => 'fan', 'FAN09G2434' => 'fan', 'FAN12G3984' => 'fan', 'FAN14G0798' => 'fan', 'FAN17G0652' => 'fan', 'FAN19G1988' => 'fan', 'FAN22G0632' => 'fan', 'FAN23G0387' => 'fan', 'FAN26G1323' => 'fan', 'FAN28G0666' => 'fan', 'FvH4_1g26080' => 'fve', 'FvH4_3g36780' => 'fve', 'FvH4_4g15270' => 'fve', 'FvH4_6g13490' => 'fve', 'Glyma.01G098700' => 'gma', 'Glyma.03G065900' => 'gma', 'Glyma.03G073754' => 'gma', 'Glyma.03G073758' => 'gma', 'Glyma.03G083200' => 'gma', 'Glyma.03G225500' => 'gma', 'Glyma.05G037766' => 'gma', 'Glyma.07G133500' => 'gma', 'Glyma.10G139400' => 'gma', 'Glyma.10G248900' => 'gma', 'Glyma.11G137800' => 'gma', 'Glyma.12G061300' => 'gma', 'Glyma.13G337900' => 'gma', 'Glyma.15G036600' => 'gma', 'Glyma.18G182800' => 'gma', 'Glyma.19G222500' => 'gma', 'Glyma.20G144800' => 'gma', 'Gohir.A01G222000' => 'ghi', 'Gohir.A03G044000' => 'ghi', 'Gohir.A03G044100' => 'ghi', 'Gohir.A04G083100' => 'ghi', 'Gohir.A07G127200' => 'ghi', 'Gohir.A07G132400' => 'ghi', 'Gohir.A08G000700' => 'ghi', 'Gohir.A11G327300' => 'ghi', 'Gohir.D01G211500' => 'ghi', 'Gohir.D03G123400' => 'ghi', 'Gohir.D03G123500' => 'ghi', 'Gohir.D04G121800' => 'ghi', 'Gohir.D07G131500' => 'ghi', 'Gohir.D07G136600' => 'ghi', 'Gohir.D08G011600' => 'ghi', 'Gohir.D11G346200' => 'ghi', 'Gorai.001G142800' => 'gra', 'Gorai.001G148700' => 'gra', 'Gorai.002G257300' => 'gra', 'Gorai.003G130000' => 'gra', 'Gorai.003G130100' => 'gra', 'Gorai.004G005300' => 'gra', 'Gorai.007G376500' => 'gra', 'Gorai.012G104700' => 'gra', 'GSVIVG01017946001' => 'vvi', 'GSVIVG01024928001' => 'vvi', 'GSVIVG01028227001' => 'vvi', 'GSVIVG01034151001' => 'vvi', 'HanXRQChr05g0135031' => 'han', 'HanXRQChr05g0135041' => 'han', 'HanXRQChr05g0140021' => 'han', 'HanXRQChr06g0178981' => 'han', 'HanXRQChr07g0188251' => 'han', 'HanXRQChr08g0235311' => 'han', 'HanXRQChr09g0271011' => 'han', 'HanXRQChr10g0293321' => 'han', 'HanXRQChr13g0388171' => 'han', 'Haze_00916' => 'cav', 'Haze_05063' => 'cav', 'Haze_20814' => 'cav', 'Haze_24128' => 'cav', 'Hma1.2p1_0745F.1_g212010' => 'hma', 'Hma1.2p1_0757F.1_g213260' => 'hma', 'Hma1.2p1_0936F.1_g238840' => 'hma', 'Hma1.2p1_1735F.1_g299890' => 'hma', 'Hma1.2p1_1861F.1_g305685' => 'hma', 'HPP92_003397' => 'vpl', 'HPP92_012597' => 'vpl', 'HPP92_015520' => 'vpl', 'HPP92_015539' => 'vpl', 'HPP92_020373' => 'vpl', 'Hund04938' => 'sun', 'Hund10677' => 'sun', 'Hund11033' => 'sun', 'Hund12155' => 'sun', 'Lalb_Chr01g0022551' => 'lal', 'Lalb_Chr03g0042341' => 'lal', 'Lalb_Chr07g0192931' => 'lal', 'Lalb_Chr12g0209551' => 'lal', 'Lalb_Chr19g0125251' => 'lal', 'Lalb_Chr19g0137891' => 'lal', 'Lalb_Chr21g0304641' => 'lal', 'Lalb_Chr21g0309881' => 'lal', 'Lj1A5T12' => 'lonja', 'Lj1C148G10' => 'lonja', 'Lj2A93T83' => 'lonja', 'Lj3A738G68' => 'lonja', 'Lj3C966T1' => 'lonja', 'Lj3g0018958' => 'lja', 'Lj3g0021831' => 'lja', 'Lj3g0025443' => 'lja', 'Lj4g0026809' => 'lja', 'Lj5g0012558' => 'lja', 'Lj5g0021586' => 'lja', 'Lsat_1_v5_gn_5_156840' => 'lsa', 'Lsat_1_v5_gn_8_73460' => 'lsa', 'Lsat_1_v5_gn_8_73481' => 'lsa', 'Lsat_1_v5_gn_9_31601' => 'lsa', 'Lsat_1_v5_gn_9_77320' => 'lsa', 'Manes.01G171300' => 'mes', 'Manes.01G171400' => 'mes', 'Manes.01G236100' => 'mes', 'Manes.02G130500' => 'mes', 'Manes.02G130600' => 'mes', 'Manes.03G180200' => 'mes', 'Manes.05G007000' => 'mes', 'Manes.08G084400' => 'mes', 'Manes.09G092600' => 'mes', 'Manes.15G027900' => 'mes', 'MBI04_g40948_MAGBIO' => 'mbi', 'MBI14_g12123_MAGBIO' => 'mbi', 'MBI18_g28915_MAGBIO' => 'mbi', 'MCO09G053' => 'mco', 'MCO11G782' => 'mco', 'MCO15G215' => 'mco', 'MD03G1088500' => 'mdo', 'MD03G1088600' => 'mdo', 'MD04G1130800' => 'mdo', 'MD09G1291700' => 'mdo', 'MD11G1097500' => 'mdo', 'MD11G1097600' => 'mdo', 'MD12G1143900' => 'mdo', 'MD13G1191400' => 'mdo', 'MD16G1191500' => 'mdo', 'Medtr1g085570' => 'mtr', 'Medtr1g104610' => 'mtr', 'Medtr2g097520' => 'mtr', 'Medtr4g021800' => 'mtr', 'Medtr4g021825' => 'mtr', 'Medtr4g064270' => 'mtr', 'Medtr4g064380' => 'mtr', 'Medtr7g062150' => 'mtr', 'MELO3C003138.2' => 'cme', 'MELO3C005187.2' => 'cme', 'MELO3C009252.2' => 'cme', 'MELO3C014481.2' => 'cme', 'MELO3C020616.2' => 'cme', 'MELO3C020617.2' => 'cme', 'MELO3C020618.2' => 'cme', 'Migut.G00328' => 'egut', 'Migut.J00320' => 'egut', 'Migut.L01000' => 'egut', 'Migut.L01953' => 'egut', 'MSTRG.10253' => 'ama', 'MSTRG.19077' => 'ama', 'MSTRG.26780' => 'ama', 'MSTRG.4023' => 'ama', 'MSTRG.5655' => 'ama', 'MSTRG.9992' => 'ama', 'Nitab4.5_0000043g0310' => 'nta', 'Nitab4.5_0000463g0080' => 'nta', 'Nitab4.5_0000705g0170' => 'nta', 'Nitab4.5_0001326g0060' => 'nta', 'Nitab4.5_0001628g0030' => 'nta', 'Nitab4.5_0002103g0110' => 'nta', 'Nitab4.5_0002946g0030' => 'nta', 'Nitab4.5_0004639g0030' => 'nta', 'Nn2g11149' => 'nnu', 'Nn2g13389' => 'nnu', 'Nn4g25326' => 'nnu', 'Nn4g26290' => 'nnu', 'Nn5g29865' => 'nnu', 'Oeu004163.1' => 'oeu', 'Oeu006901.1' => 'oeu', 'Oeu010096.1' => 'oeu', 'Oeu024340.1' => 'oeu', 'Oeu048369.1' => 'oeu', 'Os01g0973000' => 'osa', 'Os03g0273800' => 'osa', 'Os03g0701200' => 'osa', 'Os03g0834050' => 'osa', 'Os07g0634400' => 'osa', 'Peaxi162Scf00092g01414' => 'pax', 'Peaxi162Scf00165g00818' => 'pax', 'Peaxi162Scf00309g00516' => 'pax', 'Peaxi162Scf00774g00218' => 'pax', 'PGR004G1824' => 'pgr', 'PGR004G2606' => 'pgr', 'PGR031G2716' => 'pgr', 'PGR102G2460' => 'pgr', 'PGR142G2599' => 'pgr', 'PGSC0003DMG400000843' => 'stu', 'PGSC0003DMG400008829' => 'stu', 'PGSC0003DMG400030418' => 'stu', 'PGSC0003DMG400031834' => 'stu', 'PGSC0003DMG401028300' => 'stu', 'PGSC0003DMG402028300' => 'stu', 'Phvul.001G219300' => 'pvu', 'Phvul.007G056000' => 'pvu', 'Phvul.007G208000' => 'pvu', 'Phvul.008G119500' => 'pvu', 'Phvul.010G011200' => 'pvu', 'Phvul.010G014800' => 'pvu', 'Phvul.011G062900' => 'pvu', 'Phvul.L007043' => 'pvu', 'Potri.001G242300' => 'ptr', 'Potri.002G185300' => 'ptr', 'Potri.006G086900' => 'ptr', 'Potri.008G151700' => 'ptr', 'Potri.009G033500' => 'ptr', 'Potri.010G089300' => 'ptr', 'Potri.014G110800' => 'ptr', 'Pp3c27_8130' => 'ppa', 'Pp3c6_27410' => 'ppa', 'PRCOL_00001659' => 'pco', 'PRCOL_00001927' => 'pco', 'PRCOL_00003649' => 'pco', 'Prupe.1G011600' => 'ppe', 'Prupe.3G000800' => 'ppe', 'Prupe.3G001100' => 'ppe', 'Prupe.6G072700' => 'ppe', 'Prupe.6G072800' => 'ppe', 'Prupe.6G257300' => 'ppe', 'Prupe.8G033000' => 'ppe', 'Psat0s2633g0080' => 'psa', 'Psat0s3396g0080' => 'psa', 'Psat0s3396g0200' => 'psa', 'Psat3g139080' => 'psa', 'Psat5g285080' => 'psa', 'Psat6g157760' => 'psa', 'Psat6g208440' => 'psa', 'Psat7g215320' => 'psa', 'Psat7g215400' => 'psa', 'Psat7g235600' => 'psa', 'Psat7g235760' => 'psa', 'PSO063G4603' => 'pso', 'PSO210G0182' => 'pso', 'PSO210G0196' => 'pso', 'PSO339G0394' => 'pso', 'PSO339G4127' => 'pso', 'PSO513G0064' => 'pso', 'PSO761G0079' => 'pso', 'QL01p031003' => 'qlo', 'QL01p031078' => 'qlo', 'QL06p003004' => 'qlo', 'QL07p048731' => 'qlo', 'QL09p037427' => 'qlo', 'RcHm_v2.0_Chr3g0466361' => 'rch', 'RcHm_v2.0_Chr3g0485571' => 'rch', 'RcHm_v2.0_Chr4g0416551' => 'rch', 'RcHm_v2.0_Chr5g0065831' => 'rch', 'Rhsim01G0230500' => 'rsi', 'Rhsim05G0194000' => 'rsi', 'Rhsim08G0250400' => 'rsi', 'Sabra02G0131000' => 'sbr', 'Sabra06G0066300' => 'sbr', 'Sabra08G0115500' => 'sbr', 'Sabra09G0023900' => 'sbr', 'Sabra10G0054000' => 'sbr', 'Sabra14G0081500' => 'sbr', 'Sabra16G0147100' => 'sbr', 'SalBow2G2957' => 'sbo', 'SalBow4G3320' => 'sbo', 'SalBow8G1894' => 'sbo', 'Sc07g0007950' => 'sci', 'Sc12g0001360' => 'sci', 'Sc13g0004330' => 'sci', 'Sc20g0005010' => 'sci', 'Sed0000361' => 'sed', 'Sed0001706' => 'sed', 'Sed0002422' => 'sed', 'Sed0004029' => 'sed', 'Sed0004602' => 'sed', 'Sed0004943' => 'sed', 'Sed0008646' => 'sed', 'Sed0023313' => 'sed', 'Sed0024843' => 'sed', 'SEGI_00081' => 'sgi', 'SEGI_00947' => 'sgi', 'SEGI_04046' => 'sgi', 'SEGI_06880' => 'sgi', 'SEGI_09736' => 'sgi', 'SEGI_12741' => 'sgi', 'SEGI_14530' => 'sgi', 'SEGI_20705' => 'sgi', 'SEGI_26088' => 'sgi', 'SEGI_28323' => 'sgi', 'SEGI_33343' => 'sgi', 'SGA_v2.0_scaffold126G33775' => 'sas', 'SGA_v2.0_scaffold2G01337' => 'sas', 'SGA_v2.0_scaffold38G15006' => 'sas', 'SGA_v2.0_scaffold39G15264' => 'sas', 'SGA_v2.0_scaffold453G51880' => 'sas', 'SHI12696' => 'shi', 'SMO367G1096' => 'smo', 'Solyc01g068630.3' => 'sly', 'Solyc05g011880.3' => 'sly', 'Solyc06g076300.3' => 'sly', 'Solyc09g010940.4' => 'sly', 'Solyc09g075890.3' => 'sly', 'Sopen01g030560' => 'spe', 'Sopen05g006630' => 'spe', 'Sopen06g032720' => 'spe', 'Sopen09g005660' => 'spe', 'Sopen09g030690' => 'spe', 'Sp4g14540' => 'spa', 'Sp4g20030' => 'spa', 'Sp5g01320' => 'spa', 'Sp6g21170' => 'spa', 'Sp6g21180' => 'spa', 'Sp6g21190' => 'spa', 'Sp6g40220' => 'spa', 'TAR362G0122' => 'tar', 'TAR362G1338' => 'tar', 'TAR369G0590' => 'tar', 'TAR371G0824' => 'tar', 'TAR622G1429' => 'tar', 'TAR623G0734' => 'tar', 'TAR625G0441' => 'tar', 'TAR629G0976' => 'tar', 'TAR633G1195' => 'tar', 'TAR636G2660' => 'tar', 'THA.LOC104799440' => 'tha', 'THA.LOC104800966' => 'tha', 'THA.LOC104806559' => 'tha', 'THA.LOC104810765' => 'tha', 'THA.LOC104816266' => 'tha', 'THA.LOC104817419' => 'tha', 'THA.LOC104827021' => 'tha', 'Thecc.01G327400' => 'tca', 'Thecc.04G229200' => 'tca', 'Thecc.05G037400' => 'tca', 'Thecc.09G318600' => 'tca', 'Thecc.09G318700' => 'tca', 'Thhalv10006238m.g' => 'esa', 'Thhalv10014321m.g' => 'esa', 'Thhalv10014335m.g' => 'esa', 'Thhalv10015826m.g' => 'esa', 'Thhalv10017107m.g' => 'esa', 'Thhalv10017180m.g' => 'esa', 'Thhalv10029339m.g' => 'esa', 'TPR.G1699' => 'tpr', 'TPR.G23609' => 'tpr', 'TPR.G3081' => 'tpr', 'TPR.G40397' => 'tpr', 'TPR.G5522' => 'tpr', 'TPR.G5618' => 'tpr', 'TPR.G5626' => 'tpr', 'TWI09G1632' => 'twi', 'TWI23G1230' => 'twi', 'TWI53G1064' => 'twi', 'TWI59G0751' => 'twi', 'TWI74G0947' => 'twi', 'TWI77G0337' => 'twi', 'TWI79G1254' => 'twi', 'unitig_0.g2341' => 'ugi', 'unitig_26.g10006' => 'ugi', 'unitig_26.g10008' => 'ugi', 'unitig_26.g9192' => 'ugi', 'vmacro14547' => 'vma', 'vmacro15333' => 'vma', 'vmacro18743' => 'vma', 'vmacro20166' => 'vma', 'VMungo0331G0523' => 'vmu', 'VMungo0331G1202' => 'vmu', 'VMungo0720G1228' => 'vmu', 'VMungo0720G1514' => 'vmu', 'VMungo1080G0169' => 'vmu', 'VMungo1127G1475' => 'vmu', 'VMungo1383G1208' => 'vmu', 'VMungo1383G1698' => 'vmu', 'Zm00001eb012270' => 'zma', 'Zm00001eb054100' => 'zma', 'Zm00001eb063350' => 'zma', 'Zm00001eb328560' => 'zma', 'Zm00001eb342820' => 'zma', 'Zm00001eb362210' => 'zma', 'Zm00001eb397730' => 'zma', 'Zm00001eb399750' => 'zma' ) $gf_id = 'HOM05D000959' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000959' ) $data_identifier = 'HOM05D000959' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 5, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 5, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 10, 'mbi' => (int) 3, 'mco' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 2, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 3, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 11, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399750' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000959', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '622', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p07100' => 'bna', 'A03p11720' => 'bna', 'A05p08300' => 'bna', 'A05p13380' => 'bna', 'A09p54130' => 'bna', 'A10p16690' => 'bna', 'A10p16700' => 'bna', 'A10p33390' => 'bna', 'Aa31LG10G16020' => 'aar', 'Aa31LG1G11810' => 'aar', 'Aa31LG1G11830' => 'aar', 'Aa31LG1G22510' => 'aar', 'Aa31LG5G4890' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5793' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2310' => 'aag', 'Actinidia08499' => 'ach', 'Actinidia11262' => 'ach', 'Actinidia23926' => 'ach', 'Actinidia34420' => 'ach', 'Actinidia36970' => 'ach', 'Ah.02g111220' => 'amhyb', 'Ah.15g097750' => 'amhyb', 'AL4G27500' => 'aly', 'AL6G11470' => 'aly', 'AL8G35950' => 'aly', 'AL8G35960' => 'aly', 'AL8G35970' => 'aly', 'Aqoxy1G00912' => 'aox', 'Aqoxy2G02253' => 'aox', 'Aqoxy2G02411' => 'aox', 'Aqoxy5G00485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BZ66YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K8ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM4FUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6BF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HFV7XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25JBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0YNNV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MAKK6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P70IT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP2Z6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V61LZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YWP64R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3S9AI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7PGHH' => 'arhy', 'AT2G32150' => 'ath', 'AT3G62040' => 'ath', 'AT5G02230' => 'ath', 'AT5G59480' => 'ath', 'AT5G59490' => 'ath', 'ATR0332G060' => 'atr', 'ATR0559G190' => 'atr', 'ATR0693G294' => 'atr', 'Atru.chr3.3975' => 'acertr', 'Atru.chr3.3976' => 'acertr', 'Atru.chr3.3977' => 'acertr', 'Atru.chr4.2498' => 'acertr', 'Atru.chr5.838' => 'acertr', 'Atru.chr8.1990' => 'acertr', 'Atru.chr8.1991' => 'acertr', 'Atru.chr8.1992' => 'acertr', 'AUR62001759' => 'cqu', 'AUR62009545' => 'cqu', 'AUR62010474' => 'cqu', 'AUR62025820' => 'cqu', 'AUR62030422' => 'cqu', 'AUR62033605' => 'cqu', 'AUR62038615' => 'cqu', 'AUR62041347' => 'cqu', 'BcaB01g04574' => 'bca', 'BcaB02g09263' => 'bca', 'BcaB02g10453' => 'bca', 'BcaB05g22513' => 'bca', 'BcaB08g36253' => 'bca', 'BcaB08g36254' => 'bca', 'BcaC01g06519' => 'bca', 'BcaC02g11889' => 'bca', 'BcaC03g14010' => 'bca', 'BcaC03g18439' => 'bca', 'BcaC04g19765' => 'bca', 'BcaC09g48432' => 'bca', 'BcaNung07302' => 'bca', 'BolC2t06040H' => 'bol', 'BolC2t07346H' => 'bol', 'BolC3t13817H' => 'bol', 'BolC4t22625H' => 'bol', 'BolC4t23297H' => 'bol', 'BolC8t51278H' => 'bol', 'BolC9t58050H' => 'bol', 'BolC9t58051H' => 'bol', 'BolC9t60163H' => 'bol', 'BraA02t04712Z' => 'bra', 'BraA02t05791Z' => 'bra', 'BraA03t10483Z' => 'bra', 'BraA05t19795Z' => 'bra', 'BraA05t20276Z' => 'bra', 'BraA09t40827Z' => 'bra', 'BraA10t43750Z' => 'bra', 'BraA10t43751Z' => 'bra', 'BraA10t45370Z' => 'bra', 'C02p00400' => 'bna', 'C02p12460' => 'bna', 'C03p13680' => 'bna', 'C04p10270' => 'bna', 'C04p17500' => 'bna', 'C08p37010' => 'bna', 'C09p51880' => 'bna', 'C09p51890' => 'bna', 'C09p74300' => 'bna', 'CAN.G179.26' => 'can', 'CAN.G3384.1' => 'can', 'CAN.G394.68' => 'can', 'CAN.G907.13' => 'can', 'CANSAT11G0012' => 'cansat', 'CANSAT25G1586' => 'cansat', 'CANSAT35G0735' => 'cansat', 'CANSAT54G0556' => 'cansat', 'CANSAT64G0356' => 'cansat', 'CANSAT78G2042' => 'cansat', 'CARHR125920' => 'chi', 'CARHR131910' => 'chi', 'CARHR172390' => 'chi', 'CARHR211140' => 'chi', 'CARHR285850' => 'chi', 'CARHR285860' => 'chi', 'Carub.0004s1347' => 'cru', 'Carub.0004s1960' => 'cru', 'Carub.0005s2880' => 'cru', 'Carub.0006s0107' => 'cru', 'Carub.0008s2015' => 'cru', 'Carub.0008s2016' => 'cru', 'Carub.0008s2017' => 'cru', 'Ca_01315_v3' => 'car', 'Ca_05063_v3' => 'car', 'Ca_10231_v3' => 'car', 'Ca_10913_v3' => 'car', 'Ca_19156_v3' => 'car', 'Ca_23644_v3' => 'car', 'Ca_26735_v3' => 'car', 'Cc01_g13130' => 'ccan', 'Cc02_g21690' => 'ccan', 'Cc03_g03600' => 'ccan', 'Cc06_g02510' => 'ccan', 'CDE02G1265' => 'cde', 'CDE05G0415' => 'cde', 'CDE08G1082' => 'cde', 'Cfa005780' => 'cfa', 'Cfa011522' => 'cfa', 'Cfa011523' => 'cfa', 'Cfa015627' => 'cfa', 'Cfa017359' => 'cfa', 'Ciclev10005687m.g' => 'ccl', 'Ciclev10012173m.g' => 'ccl', 'Ciclev10021621m.g' => 'ccl', 'Ciclev10028968m.g' => 'ccl', 'Ciclev10029907m.g' => 'ccl', 'CiPaw.01G164800' => 'cil', 'CiPaw.07G083700' => 'cil', 'CiPaw.07G127000' => 'cil', 'CiPaw.07G136900' => 'cil', 'CiPaw.08G081700' => 'cil', 'CiPaw.09G194600' => 'cil', 'CiPaw.10G146500' => 'cil', 'CiPaw.13G091500' => 'cil', 'CiPaw.13G091600' => 'cil', 'ClCG00G003390' => 'cla', 'ClCG01G007220' => 'cla', 'ClCG03G001370' => 'cla', 'ClCG04G008100' => 'cla', 'ClCG06G006110' => 'cla', 'ClCG06G006130' => 'cla', 'ClCG10G021210' => 'cla', 'COL.COLO4_07648' => 'col', 'COL.COLO4_07650' => 'col', 'COL.COLO4_07651' => 'col', 'COL.COLO4_14780' => 'col', 'COL.COLO4_18546' => 'col', 'COL.COLO4_18547' => 'col', 'COL.COLO4_23103' => 'col', 'COL.COLO4_30419' => 'col', 'COL.COLO4_34232' => 'col', 'Cpa.g.sc169.20' => 'cpa', 'Cpa.g.sc57.45' => 'cpa', 'Cpa.g.sc58.124' => 'cpa', 'Cpa.g.sc58.125' => 'cpa', 'Cpa.g.sc81.118' => 'cpa', 'Cpa.g.sc81.119' => 'cpa', 'Cre12.g524700' => 'cre', 'CsaV3_1G034430' => 'csa', 'CsaV3_1G034440' => 'csa', 'CsaV3_1G034450' => 'csa', 'CsaV3_3G034830' => 'csa', 'CsaV3_4G025090' => 'csa', 'CsaV3_5G018660' => 'csa', 'CsaV3_6G038160' => 'csa', 'CSS0003447' => 'camsi', 'CSS0017840' => 'camsi', 'CSS0019260' => 'camsi', 'CSS0040375' => 'camsi', 'CSS0042533' => 'camsi', 'DCAR_005960' => 'dca', 'DCAR_012104' => 'dca', 'DCAR_012105' => 'dca', 'DCAR_012293' => 'dca', 'DCAR_015632' => 'dca', 'DCAR_024602' => 'dca', 'DCAR_028752' => 'dca', 'Dinv06261' => 'din', 'Dinv13982' => 'din', 'Dinv17029' => 'din', 'Dinv18463' => 'din', 'Dinv33181' => 'din', 'Dinv35585' => 'din', 'Dinv37161' => 'din', 'Dinv42977' => 'din', 'Dinv43122' => 'din', 'Dinv44517' => 'din', 'Duzib093G0256' => 'dzi', 'Duzib106G1254' => 'dzi', 'Duzib128G1789' => 'dzi', 'Duzib133G0633' => 'dzi', 'Duzib138G0510' => 'dzi', 'Duzib150G1084' => 'dzi', 'Duzib168G0488' => 'dzi', 'Duzib168G1523' => 'dzi', 'Duzib170G0133' => 'dzi', 'ECA234G1433' => 'eca', 'ECA236G1432' => 'eca', 'ECA236G2256' => 'eca', 'ECA236G2365' => 'eca', 'ECA236G4830' => 'eca', 'ECA248G1505' => 'eca', 'EL10Ac3g06431' => 'bvu', 'EL10Ac5g12577' => 'bvu', 'EL10Ac6g13533' => 'bvu', 'EL10Ac7g16045' => 'bvu', 'Eucgr.A01281' => 'egr', 'Eucgr.B02326' => 'egr', 'Eucgr.H03532' => 'egr', 'Eucgr.K00553' => 'egr', 'Eucgr.K03116' => 'egr', 'FAN02G3963' => 'fan', 'FAN05G0438' => 'fan', 'FAN09G2434' => 'fan', 'FAN12G3984' => 'fan', 'FAN14G0798' => 'fan', 'FAN17G0652' => 'fan', 'FAN19G1988' => 'fan', 'FAN22G0632' => 'fan', 'FAN23G0387' => 'fan', 'FAN26G1323' => 'fan', 'FAN28G0666' => 'fan', 'FvH4_1g26080' => 'fve', 'FvH4_3g36780' => 'fve', 'FvH4_4g15270' => 'fve', 'FvH4_6g13490' => 'fve', 'Glyma.01G098700' => 'gma', 'Glyma.03G065900' => 'gma', 'Glyma.03G073754' => 'gma', 'Glyma.03G073758' => 'gma', 'Glyma.03G083200' => 'gma', 'Glyma.03G225500' => 'gma', 'Glyma.05G037766' => 'gma', 'Glyma.07G133500' => 'gma', 'Glyma.10G139400' => 'gma', 'Glyma.10G248900' => 'gma', 'Glyma.11G137800' => 'gma', 'Glyma.12G061300' => 'gma', 'Glyma.13G337900' => 'gma', 'Glyma.15G036600' => 'gma', 'Glyma.18G182800' => 'gma', 'Glyma.19G222500' => 'gma', 'Glyma.20G144800' => 'gma', 'Gohir.A01G222000' => 'ghi', 'Gohir.A03G044000' => 'ghi', 'Gohir.A03G044100' => 'ghi', 'Gohir.A04G083100' => 'ghi', 'Gohir.A07G127200' => 'ghi', 'Gohir.A07G132400' => 'ghi', 'Gohir.A08G000700' => 'ghi', 'Gohir.A11G327300' => 'ghi', 'Gohir.D01G211500' => 'ghi', 'Gohir.D03G123400' => 'ghi', 'Gohir.D03G123500' => 'ghi', 'Gohir.D04G121800' => 'ghi', 'Gohir.D07G131500' => 'ghi', 'Gohir.D07G136600' => 'ghi', 'Gohir.D08G011600' => 'ghi', 'Gohir.D11G346200' => 'ghi', 'Gorai.001G142800' => 'gra', 'Gorai.001G148700' => 'gra', 'Gorai.002G257300' => 'gra', 'Gorai.003G130000' => 'gra', 'Gorai.003G130100' => 'gra', 'Gorai.004G005300' => 'gra', 'Gorai.007G376500' => 'gra', 'Gorai.012G104700' => 'gra', 'GSVIVG01017946001' => 'vvi', 'GSVIVG01024928001' => 'vvi', 'GSVIVG01028227001' => 'vvi', 'GSVIVG01034151001' => 'vvi', 'HanXRQChr05g0135031' => 'han', 'HanXRQChr05g0135041' => 'han', 'HanXRQChr05g0140021' => 'han', 'HanXRQChr06g0178981' => 'han', 'HanXRQChr07g0188251' => 'han', 'HanXRQChr08g0235311' => 'han', 'HanXRQChr09g0271011' => 'han', 'HanXRQChr10g0293321' => 'han', 'HanXRQChr13g0388171' => 'han', 'Haze_00916' => 'cav', 'Haze_05063' => 'cav', 'Haze_20814' => 'cav', 'Haze_24128' => 'cav', 'Hma1.2p1_0745F.1_g212010' => 'hma', 'Hma1.2p1_0757F.1_g213260' => 'hma', 'Hma1.2p1_0936F.1_g238840' => 'hma', 'Hma1.2p1_1735F.1_g299890' => 'hma', 'Hma1.2p1_1861F.1_g305685' => 'hma', 'HPP92_003397' => 'vpl', 'HPP92_012597' => 'vpl', 'HPP92_015520' => 'vpl', 'HPP92_015539' => 'vpl', 'HPP92_020373' => 'vpl', 'Hund04938' => 'sun', 'Hund10677' => 'sun', 'Hund11033' => 'sun', 'Hund12155' => 'sun', 'Lalb_Chr01g0022551' => 'lal', 'Lalb_Chr03g0042341' => 'lal', 'Lalb_Chr07g0192931' => 'lal', 'Lalb_Chr12g0209551' => 'lal', 'Lalb_Chr19g0125251' => 'lal', 'Lalb_Chr19g0137891' => 'lal', 'Lalb_Chr21g0304641' => 'lal', 'Lalb_Chr21g0309881' => 'lal', 'Lj1A5T12' => 'lonja', 'Lj1C148G10' => 'lonja', 'Lj2A93T83' => 'lonja', 'Lj3A738G68' => 'lonja', 'Lj3C966T1' => 'lonja', 'Lj3g0018958' => 'lja', 'Lj3g0021831' => 'lja', 'Lj3g0025443' => 'lja', 'Lj4g0026809' => 'lja', 'Lj5g0012558' => 'lja', 'Lj5g0021586' => 'lja', 'Lsat_1_v5_gn_5_156840' => 'lsa', 'Lsat_1_v5_gn_8_73460' => 'lsa', 'Lsat_1_v5_gn_8_73481' => 'lsa', 'Lsat_1_v5_gn_9_31601' => 'lsa', 'Lsat_1_v5_gn_9_77320' => 'lsa', 'Manes.01G171300' => 'mes', 'Manes.01G171400' => 'mes', 'Manes.01G236100' => 'mes', 'Manes.02G130500' => 'mes', 'Manes.02G130600' => 'mes', 'Manes.03G180200' => 'mes', 'Manes.05G007000' => 'mes', 'Manes.08G084400' => 'mes', 'Manes.09G092600' => 'mes', 'Manes.15G027900' => 'mes', 'MBI04_g40948_MAGBIO' => 'mbi', 'MBI14_g12123_MAGBIO' => 'mbi', 'MBI18_g28915_MAGBIO' => 'mbi', 'MCO09G053' => 'mco', 'MCO11G782' => 'mco', 'MCO15G215' => 'mco', 'MD03G1088500' => 'mdo', 'MD03G1088600' => 'mdo', 'MD04G1130800' => 'mdo', 'MD09G1291700' => 'mdo', 'MD11G1097500' => 'mdo', 'MD11G1097600' => 'mdo', 'MD12G1143900' => 'mdo', 'MD13G1191400' => 'mdo', 'MD16G1191500' => 'mdo', 'Medtr1g085570' => 'mtr', 'Medtr1g104610' => 'mtr', 'Medtr2g097520' => 'mtr', 'Medtr4g021800' => 'mtr', 'Medtr4g021825' => 'mtr', 'Medtr4g064270' => 'mtr', 'Medtr4g064380' => 'mtr', 'Medtr7g062150' => 'mtr', 'MELO3C003138.2' => 'cme', 'MELO3C005187.2' => 'cme', 'MELO3C009252.2' => 'cme', 'MELO3C014481.2' => 'cme', 'MELO3C020616.2' => 'cme', 'MELO3C020617.2' => 'cme', 'MELO3C020618.2' => 'cme', 'Migut.G00328' => 'egut', 'Migut.J00320' => 'egut', 'Migut.L01000' => 'egut', 'Migut.L01953' => 'egut', 'MSTRG.10253' => 'ama', 'MSTRG.19077' => 'ama', 'MSTRG.26780' => 'ama', 'MSTRG.4023' => 'ama', 'MSTRG.5655' => 'ama', 'MSTRG.9992' => 'ama', 'Nitab4.5_0000043g0310' => 'nta', 'Nitab4.5_0000463g0080' => 'nta', 'Nitab4.5_0000705g0170' => 'nta', 'Nitab4.5_0001326g0060' => 'nta', 'Nitab4.5_0001628g0030' => 'nta', 'Nitab4.5_0002103g0110' => 'nta', 'Nitab4.5_0002946g0030' => 'nta', 'Nitab4.5_0004639g0030' => 'nta', 'Nn2g11149' => 'nnu', 'Nn2g13389' => 'nnu', 'Nn4g25326' => 'nnu', 'Nn4g26290' => 'nnu', 'Nn5g29865' => 'nnu', 'Oeu004163.1' => 'oeu', 'Oeu006901.1' => 'oeu', 'Oeu010096.1' => 'oeu', 'Oeu024340.1' => 'oeu', 'Oeu048369.1' => 'oeu', 'Os01g0973000' => 'osa', 'Os03g0273800' => 'osa', 'Os03g0701200' => 'osa', 'Os03g0834050' => 'osa', 'Os07g0634400' => 'osa', 'Peaxi162Scf00092g01414' => 'pax', 'Peaxi162Scf00165g00818' => 'pax', 'Peaxi162Scf00309g00516' => 'pax', 'Peaxi162Scf00774g00218' => 'pax', 'PGR004G1824' => 'pgr', 'PGR004G2606' => 'pgr', 'PGR031G2716' => 'pgr', 'PGR102G2460' => 'pgr', 'PGR142G2599' => 'pgr', 'PGSC0003DMG400000843' => 'stu', 'PGSC0003DMG400008829' => 'stu', 'PGSC0003DMG400030418' => 'stu', 'PGSC0003DMG400031834' => 'stu', 'PGSC0003DMG401028300' => 'stu', 'PGSC0003DMG402028300' => 'stu', 'Phvul.001G219300' => 'pvu', 'Phvul.007G056000' => 'pvu', 'Phvul.007G208000' => 'pvu', 'Phvul.008G119500' => 'pvu', 'Phvul.010G011200' => 'pvu', 'Phvul.010G014800' => 'pvu', 'Phvul.011G062900' => 'pvu', 'Phvul.L007043' => 'pvu', 'Potri.001G242300' => 'ptr', 'Potri.002G185300' => 'ptr', 'Potri.006G086900' => 'ptr', 'Potri.008G151700' => 'ptr', 'Potri.009G033500' => 'ptr', 'Potri.010G089300' => 'ptr', 'Potri.014G110800' => 'ptr', 'Pp3c27_8130' => 'ppa', 'Pp3c6_27410' => 'ppa', 'PRCOL_00001659' => 'pco', 'PRCOL_00001927' => 'pco', 'PRCOL_00003649' => 'pco', 'Prupe.1G011600' => 'ppe', 'Prupe.3G000800' => 'ppe', 'Prupe.3G001100' => 'ppe', 'Prupe.6G072700' => 'ppe', 'Prupe.6G072800' => 'ppe', 'Prupe.6G257300' => 'ppe', 'Prupe.8G033000' => 'ppe', 'Psat0s2633g0080' => 'psa', 'Psat0s3396g0080' => 'psa', 'Psat0s3396g0200' => 'psa', 'Psat3g139080' => 'psa', 'Psat5g285080' => 'psa', 'Psat6g157760' => 'psa', 'Psat6g208440' => 'psa', 'Psat7g215320' => 'psa', 'Psat7g215400' => 'psa', 'Psat7g235600' => 'psa', 'Psat7g235760' => 'psa', 'PSO063G4603' => 'pso', 'PSO210G0182' => 'pso', 'PSO210G0196' => 'pso', 'PSO339G0394' => 'pso', 'PSO339G4127' => 'pso', 'PSO513G0064' => 'pso', 'PSO761G0079' => 'pso', 'QL01p031003' => 'qlo', 'QL01p031078' => 'qlo', 'QL06p003004' => 'qlo', 'QL07p048731' => 'qlo', 'QL09p037427' => 'qlo', 'RcHm_v2.0_Chr3g0466361' => 'rch', 'RcHm_v2.0_Chr3g0485571' => 'rch', 'RcHm_v2.0_Chr4g0416551' => 'rch', 'RcHm_v2.0_Chr5g0065831' => 'rch', 'Rhsim01G0230500' => 'rsi', 'Rhsim05G0194000' => 'rsi', 'Rhsim08G0250400' => 'rsi', 'Sabra02G0131000' => 'sbr', 'Sabra06G0066300' => 'sbr', 'Sabra08G0115500' => 'sbr', 'Sabra09G0023900' => 'sbr', 'Sabra10G0054000' => 'sbr', 'Sabra14G0081500' => 'sbr', 'Sabra16G0147100' => 'sbr', 'SalBow2G2957' => 'sbo', 'SalBow4G3320' => 'sbo', 'SalBow8G1894' => 'sbo', 'Sc07g0007950' => 'sci', 'Sc12g0001360' => 'sci', 'Sc13g0004330' => 'sci', 'Sc20g0005010' => 'sci', 'Sed0000361' => 'sed', 'Sed0001706' => 'sed', 'Sed0002422' => 'sed', 'Sed0004029' => 'sed', 'Sed0004602' => 'sed', 'Sed0004943' => 'sed', 'Sed0008646' => 'sed', 'Sed0023313' => 'sed', 'Sed0024843' => 'sed', 'SEGI_00081' => 'sgi', 'SEGI_00947' => 'sgi', 'SEGI_04046' => 'sgi', 'SEGI_06880' => 'sgi', 'SEGI_09736' => 'sgi', 'SEGI_12741' => 'sgi', 'SEGI_14530' => 'sgi', 'SEGI_20705' => 'sgi', 'SEGI_26088' => 'sgi', 'SEGI_28323' => 'sgi', 'SEGI_33343' => 'sgi', 'SGA_v2.0_scaffold126G33775' => 'sas', 'SGA_v2.0_scaffold2G01337' => 'sas', 'SGA_v2.0_scaffold38G15006' => 'sas', 'SGA_v2.0_scaffold39G15264' => 'sas', 'SGA_v2.0_scaffold453G51880' => 'sas', 'SHI12696' => 'shi', 'SMO367G1096' => 'smo', 'Solyc01g068630.3' => 'sly', 'Solyc05g011880.3' => 'sly', 'Solyc06g076300.3' => 'sly', 'Solyc09g010940.4' => 'sly', 'Solyc09g075890.3' => 'sly', 'Sopen01g030560' => 'spe', 'Sopen05g006630' => 'spe', 'Sopen06g032720' => 'spe', 'Sopen09g005660' => 'spe', 'Sopen09g030690' => 'spe', 'Sp4g14540' => 'spa', 'Sp4g20030' => 'spa', 'Sp5g01320' => 'spa', 'Sp6g21170' => 'spa', 'Sp6g21180' => 'spa', 'Sp6g21190' => 'spa', 'Sp6g40220' => 'spa', 'TAR362G0122' => 'tar', 'TAR362G1338' => 'tar', 'TAR369G0590' => 'tar', 'TAR371G0824' => 'tar', 'TAR622G1429' => 'tar', 'TAR623G0734' => 'tar', 'TAR625G0441' => 'tar', 'TAR629G0976' => 'tar', 'TAR633G1195' => 'tar', 'TAR636G2660' => 'tar', 'THA.LOC104799440' => 'tha', 'THA.LOC104800966' => 'tha', 'THA.LOC104806559' => 'tha', 'THA.LOC104810765' => 'tha', 'THA.LOC104816266' => 'tha', 'THA.LOC104817419' => 'tha', 'THA.LOC104827021' => 'tha', 'Thecc.01G327400' => 'tca', 'Thecc.04G229200' => 'tca', 'Thecc.05G037400' => 'tca', 'Thecc.09G318600' => 'tca', 'Thecc.09G318700' => 'tca', 'Thhalv10006238m.g' => 'esa', 'Thhalv10014321m.g' => 'esa', 'Thhalv10014335m.g' => 'esa', 'Thhalv10015826m.g' => 'esa', 'Thhalv10017107m.g' => 'esa', 'Thhalv10017180m.g' => 'esa', 'Thhalv10029339m.g' => 'esa', 'TPR.G1699' => 'tpr', 'TPR.G23609' => 'tpr', 'TPR.G3081' => 'tpr', 'TPR.G40397' => 'tpr', 'TPR.G5522' => 'tpr', 'TPR.G5618' => 'tpr', 'TPR.G5626' => 'tpr', 'TWI09G1632' => 'twi', 'TWI23G1230' => 'twi', 'TWI53G1064' => 'twi', 'TWI59G0751' => 'twi', 'TWI74G0947' => 'twi', 'TWI77G0337' => 'twi', 'TWI79G1254' => 'twi', 'unitig_0.g2341' => 'ugi', 'unitig_26.g10006' => 'ugi', 'unitig_26.g10008' => 'ugi', 'unitig_26.g9192' => 'ugi', 'vmacro14547' => 'vma', 'vmacro15333' => 'vma', 'vmacro18743' => 'vma', 'vmacro20166' => 'vma', 'VMungo0331G0523' => 'vmu', 'VMungo0331G1202' => 'vmu', 'VMungo0720G1228' => 'vmu', 'VMungo0720G1514' => 'vmu', 'VMungo1080G0169' => 'vmu', 'VMungo1127G1475' => 'vmu', 'VMungo1383G1208' => 'vmu', 'VMungo1383G1698' => 'vmu', 'Zm00001eb012270' => 'zma', 'Zm00001eb054100' => 'zma', 'Zm00001eb063350' => 'zma', 'Zm00001eb328560' => 'zma', 'Zm00001eb342820' => 'zma', 'Zm00001eb362210' => 'zma', 'Zm00001eb397730' => 'zma', 'Zm00001eb399750' => 'zma' ), 'gf_id' => 'HOM05D000959', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000959' ), 'data_identifier' => 'HOM05D000959', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000959', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '622', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p07100' => 'bna', 'A03p11720' => 'bna', 'A05p08300' => 'bna', 'A05p13380' => 'bna', 'A09p54130' => 'bna', 'A10p16690' => 'bna', 'A10p16700' => 'bna', 'A10p33390' => 'bna', 'Aa31LG10G16020' => 'aar', 'Aa31LG1G11810' => 'aar', 'Aa31LG1G11830' => 'aar', 'Aa31LG1G22510' => 'aar', 'Aa31LG5G4890' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5793' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2310' => 'aag', 'Actinidia08499' => 'ach', 'Actinidia11262' => 'ach', 'Actinidia23926' => 'ach', 'Actinidia34420' => 'ach', 'Actinidia36970' => 'ach', 'Ah.02g111220' => 'amhyb', 'Ah.15g097750' => 'amhyb', 'AL4G27500' => 'aly', 'AL6G11470' => 'aly', 'AL8G35950' => 'aly', 'AL8G35960' => 'aly', 'AL8G35970' => 'aly', 'Aqoxy1G00912' => 'aox', 'Aqoxy2G02253' => 'aox', 'Aqoxy2G02411' => 'aox', 'Aqoxy5G00485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BZ66YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K8ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM4FUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6BF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HFV7XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25JBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0YNNV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MAKK6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P70IT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP2Z6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V61LZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YWP64R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3S9AI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7PGHH' => 'arhy', 'AT2G32150' => 'ath', 'AT3G62040' => 'ath', 'AT5G02230' => 'ath', 'AT5G59480' => 'ath', 'AT5G59490' => 'ath', 'ATR0332G060' => 'atr', 'ATR0559G190' => 'atr', 'ATR0693G294' => 'atr', 'Atru.chr3.3975' => 'acertr', 'Atru.chr3.3976' => 'acertr', 'Atru.chr3.3977' => 'acertr', 'Atru.chr4.2498' => 'acertr', 'Atru.chr5.838' => 'acertr', 'Atru.chr8.1990' => 'acertr', 'Atru.chr8.1991' => 'acertr', 'Atru.chr8.1992' => 'acertr', 'AUR62001759' => 'cqu', 'AUR62009545' => 'cqu', 'AUR62010474' => 'cqu', 'AUR62025820' => 'cqu', 'AUR62030422' => 'cqu', 'AUR62033605' => 'cqu', 'AUR62038615' => 'cqu', 'AUR62041347' => 'cqu', 'BcaB01g04574' => 'bca', 'BcaB02g09263' => 'bca', 'BcaB02g10453' => 'bca', 'BcaB05g22513' => 'bca', 'BcaB08g36253' => 'bca', 'BcaB08g36254' => 'bca', 'BcaC01g06519' => 'bca', 'BcaC02g11889' => 'bca', 'BcaC03g14010' => 'bca', 'BcaC03g18439' => 'bca', 'BcaC04g19765' => 'bca', 'BcaC09g48432' => 'bca', 'BcaNung07302' => 'bca', 'BolC2t06040H' => 'bol', 'BolC2t07346H' => 'bol', 'BolC3t13817H' => 'bol', 'BolC4t22625H' => 'bol', 'BolC4t23297H' => 'bol', 'BolC8t51278H' => 'bol', 'BolC9t58050H' => 'bol', 'BolC9t58051H' => 'bol', 'BolC9t60163H' => 'bol', 'BraA02t04712Z' => 'bra', 'BraA02t05791Z' => 'bra', 'BraA03t10483Z' => 'bra', 'BraA05t19795Z' => 'bra', 'BraA05t20276Z' => 'bra', 'BraA09t40827Z' => 'bra', 'BraA10t43750Z' => 'bra', 'BraA10t43751Z' => 'bra', 'BraA10t45370Z' => 'bra', 'C02p00400' => 'bna', 'C02p12460' => 'bna', 'C03p13680' => 'bna', 'C04p10270' => 'bna', 'C04p17500' => 'bna', 'C08p37010' => 'bna', 'C09p51880' => 'bna', 'C09p51890' => 'bna', 'C09p74300' => 'bna', 'CAN.G179.26' => 'can', 'CAN.G3384.1' => 'can', 'CAN.G394.68' => 'can', 'CAN.G907.13' => 'can', 'CANSAT11G0012' => 'cansat', 'CANSAT25G1586' => 'cansat', 'CANSAT35G0735' => 'cansat', 'CANSAT54G0556' => 'cansat', 'CANSAT64G0356' => 'cansat', 'CANSAT78G2042' => 'cansat', 'CARHR125920' => 'chi', 'CARHR131910' => 'chi', 'CARHR172390' => 'chi', 'CARHR211140' => 'chi', 'CARHR285850' => 'chi', 'CARHR285860' => 'chi', 'Carub.0004s1347' => 'cru', 'Carub.0004s1960' => 'cru', 'Carub.0005s2880' => 'cru', 'Carub.0006s0107' => 'cru', 'Carub.0008s2015' => 'cru', 'Carub.0008s2016' => 'cru', 'Carub.0008s2017' => 'cru', 'Ca_01315_v3' => 'car', 'Ca_05063_v3' => 'car', 'Ca_10231_v3' => 'car', 'Ca_10913_v3' => 'car', 'Ca_19156_v3' => 'car', 'Ca_23644_v3' => 'car', 'Ca_26735_v3' => 'car', 'Cc01_g13130' => 'ccan', 'Cc02_g21690' => 'ccan', 'Cc03_g03600' => 'ccan', 'Cc06_g02510' => 'ccan', 'CDE02G1265' => 'cde', 'CDE05G0415' => 'cde', 'CDE08G1082' => 'cde', 'Cfa005780' => 'cfa', 'Cfa011522' => 'cfa', 'Cfa011523' => 'cfa', 'Cfa015627' => 'cfa', 'Cfa017359' => 'cfa', 'Ciclev10005687m.g' => 'ccl', 'Ciclev10012173m.g' => 'ccl', 'Ciclev10021621m.g' => 'ccl', 'Ciclev10028968m.g' => 'ccl', 'Ciclev10029907m.g' => 'ccl', 'CiPaw.01G164800' => 'cil', 'CiPaw.07G083700' => 'cil', 'CiPaw.07G127000' => 'cil', 'CiPaw.07G136900' => 'cil', 'CiPaw.08G081700' => 'cil', 'CiPaw.09G194600' => 'cil', 'CiPaw.10G146500' => 'cil', 'CiPaw.13G091500' => 'cil', 'CiPaw.13G091600' => 'cil', 'ClCG00G003390' => 'cla', 'ClCG01G007220' => 'cla', 'ClCG03G001370' => 'cla', 'ClCG04G008100' => 'cla', 'ClCG06G006110' => 'cla', 'ClCG06G006130' => 'cla', 'ClCG10G021210' => 'cla', 'COL.COLO4_07648' => 'col', 'COL.COLO4_07650' => 'col', 'COL.COLO4_07651' => 'col', 'COL.COLO4_14780' => 'col', 'COL.COLO4_18546' => 'col', 'COL.COLO4_18547' => 'col', 'COL.COLO4_23103' => 'col', 'COL.COLO4_30419' => 'col', 'COL.COLO4_34232' => 'col', 'Cpa.g.sc169.20' => 'cpa', 'Cpa.g.sc57.45' => 'cpa', 'Cpa.g.sc58.124' => 'cpa', 'Cpa.g.sc58.125' => 'cpa', 'Cpa.g.sc81.118' => 'cpa', 'Cpa.g.sc81.119' => 'cpa', 'Cre12.g524700' => 'cre', 'CsaV3_1G034430' => 'csa', 'CsaV3_1G034440' => 'csa', 'CsaV3_1G034450' => 'csa', 'CsaV3_3G034830' => 'csa', 'CsaV3_4G025090' => 'csa', 'CsaV3_5G018660' => 'csa', 'CsaV3_6G038160' => 'csa', 'CSS0003447' => 'camsi', 'CSS0017840' => 'camsi', 'CSS0019260' => 'camsi', 'CSS0040375' => 'camsi', 'CSS0042533' => 'camsi', 'DCAR_005960' => 'dca', 'DCAR_012104' => 'dca', 'DCAR_012105' => 'dca', 'DCAR_012293' => 'dca', 'DCAR_015632' => 'dca', 'DCAR_024602' => 'dca', 'DCAR_028752' => 'dca', 'Dinv06261' => 'din', 'Dinv13982' => 'din', 'Dinv17029' => 'din', 'Dinv18463' => 'din', 'Dinv33181' => 'din', 'Dinv35585' => 'din', 'Dinv37161' => 'din', 'Dinv42977' => 'din', 'Dinv43122' => 'din', 'Dinv44517' => 'din', 'Duzib093G0256' => 'dzi', 'Duzib106G1254' => 'dzi', 'Duzib128G1789' => 'dzi', 'Duzib133G0633' => 'dzi', 'Duzib138G0510' => 'dzi', 'Duzib150G1084' => 'dzi', 'Duzib168G0488' => 'dzi', 'Duzib168G1523' => 'dzi', 'Duzib170G0133' => 'dzi', 'ECA234G1433' => 'eca', 'ECA236G1432' => 'eca', 'ECA236G2256' => 'eca', 'ECA236G2365' => 'eca', 'ECA236G4830' => 'eca', 'ECA248G1505' => 'eca', 'EL10Ac3g06431' => 'bvu', 'EL10Ac5g12577' => 'bvu', 'EL10Ac6g13533' => 'bvu', 'EL10Ac7g16045' => 'bvu', 'Eucgr.A01281' => 'egr', 'Eucgr.B02326' => 'egr', 'Eucgr.H03532' => 'egr', 'Eucgr.K00553' => 'egr', 'Eucgr.K03116' => 'egr', 'FAN02G3963' => 'fan', 'FAN05G0438' => 'fan', 'FAN09G2434' => 'fan', 'FAN12G3984' => 'fan', 'FAN14G0798' => 'fan', 'FAN17G0652' => 'fan', 'FAN19G1988' => 'fan', 'FAN22G0632' => 'fan', 'FAN23G0387' => 'fan', 'FAN26G1323' => 'fan', 'FAN28G0666' => 'fan', 'FvH4_1g26080' => 'fve', 'FvH4_3g36780' => 'fve', 'FvH4_4g15270' => 'fve', 'FvH4_6g13490' => 'fve', 'Glyma.01G098700' => 'gma', 'Glyma.03G065900' => 'gma', 'Glyma.03G073754' => 'gma', 'Glyma.03G073758' => 'gma', 'Glyma.03G083200' => 'gma', 'Glyma.03G225500' => 'gma', 'Glyma.05G037766' => 'gma', 'Glyma.07G133500' => 'gma', 'Glyma.10G139400' => 'gma', 'Glyma.10G248900' => 'gma', 'Glyma.11G137800' => 'gma', 'Glyma.12G061300' => 'gma', 'Glyma.13G337900' => 'gma', 'Glyma.15G036600' => 'gma', 'Glyma.18G182800' => 'gma', 'Glyma.19G222500' => 'gma', 'Glyma.20G144800' => 'gma', 'Gohir.A01G222000' => 'ghi', 'Gohir.A03G044000' => 'ghi', 'Gohir.A03G044100' => 'ghi', 'Gohir.A04G083100' => 'ghi', 'Gohir.A07G127200' => 'ghi', 'Gohir.A07G132400' => 'ghi', 'Gohir.A08G000700' => 'ghi', 'Gohir.A11G327300' => 'ghi', 'Gohir.D01G211500' => 'ghi', 'Gohir.D03G123400' => 'ghi', 'Gohir.D03G123500' => 'ghi', 'Gohir.D04G121800' => 'ghi', 'Gohir.D07G131500' => 'ghi', 'Gohir.D07G136600' => 'ghi', 'Gohir.D08G011600' => 'ghi', 'Gohir.D11G346200' => 'ghi', 'Gorai.001G142800' => 'gra', 'Gorai.001G148700' => 'gra', 'Gorai.002G257300' => 'gra', 'Gorai.003G130000' => 'gra', 'Gorai.003G130100' => 'gra', 'Gorai.004G005300' => 'gra', 'Gorai.007G376500' => 'gra', 'Gorai.012G104700' => 'gra', 'GSVIVG01017946001' => 'vvi', 'GSVIVG01024928001' => 'vvi', 'GSVIVG01028227001' => 'vvi', 'GSVIVG01034151001' => 'vvi', 'HanXRQChr05g0135031' => 'han', 'HanXRQChr05g0135041' => 'han', 'HanXRQChr05g0140021' => 'han', 'HanXRQChr06g0178981' => 'han', 'HanXRQChr07g0188251' => 'han', 'HanXRQChr08g0235311' => 'han', 'HanXRQChr09g0271011' => 'han', 'HanXRQChr10g0293321' => 'han', 'HanXRQChr13g0388171' => 'han', 'Haze_00916' => 'cav', 'Haze_05063' => 'cav', 'Haze_20814' => 'cav', 'Haze_24128' => 'cav', 'Hma1.2p1_0745F.1_g212010' => 'hma', 'Hma1.2p1_0757F.1_g213260' => 'hma', 'Hma1.2p1_0936F.1_g238840' => 'hma', 'Hma1.2p1_1735F.1_g299890' => 'hma', 'Hma1.2p1_1861F.1_g305685' => 'hma', 'HPP92_003397' => 'vpl', 'HPP92_012597' => 'vpl', 'HPP92_015520' => 'vpl', 'HPP92_015539' => 'vpl', 'HPP92_020373' => 'vpl', 'Hund04938' => 'sun', 'Hund10677' => 'sun', 'Hund11033' => 'sun', 'Hund12155' => 'sun', 'Lalb_Chr01g0022551' => 'lal', 'Lalb_Chr03g0042341' => 'lal', 'Lalb_Chr07g0192931' => 'lal', 'Lalb_Chr12g0209551' => 'lal', 'Lalb_Chr19g0125251' => 'lal', 'Lalb_Chr19g0137891' => 'lal', 'Lalb_Chr21g0304641' => 'lal', 'Lalb_Chr21g0309881' => 'lal', 'Lj1A5T12' => 'lonja', 'Lj1C148G10' => 'lonja', 'Lj2A93T83' => 'lonja', 'Lj3A738G68' => 'lonja', 'Lj3C966T1' => 'lonja', 'Lj3g0018958' => 'lja', 'Lj3g0021831' => 'lja', 'Lj3g0025443' => 'lja', 'Lj4g0026809' => 'lja', 'Lj5g0012558' => 'lja', 'Lj5g0021586' => 'lja', 'Lsat_1_v5_gn_5_156840' => 'lsa', 'Lsat_1_v5_gn_8_73460' => 'lsa', 'Lsat_1_v5_gn_8_73481' => 'lsa', 'Lsat_1_v5_gn_9_31601' => 'lsa', 'Lsat_1_v5_gn_9_77320' => 'lsa', 'Manes.01G171300' => 'mes', 'Manes.01G171400' => 'mes', 'Manes.01G236100' => 'mes', 'Manes.02G130500' => 'mes', 'Manes.02G130600' => 'mes', 'Manes.03G180200' => 'mes', 'Manes.05G007000' => 'mes', 'Manes.08G084400' => 'mes', 'Manes.09G092600' => 'mes', 'Manes.15G027900' => 'mes', 'MBI04_g40948_MAGBIO' => 'mbi', 'MBI14_g12123_MAGBIO' => 'mbi', 'MBI18_g28915_MAGBIO' => 'mbi', 'MCO09G053' => 'mco', 'MCO11G782' => 'mco', 'MCO15G215' => 'mco', 'MD03G1088500' => 'mdo', 'MD03G1088600' => 'mdo', 'MD04G1130800' => 'mdo', 'MD09G1291700' => 'mdo', 'MD11G1097500' => 'mdo', 'MD11G1097600' => 'mdo', 'MD12G1143900' => 'mdo', 'MD13G1191400' => 'mdo', 'MD16G1191500' => 'mdo', 'Medtr1g085570' => 'mtr', 'Medtr1g104610' => 'mtr', 'Medtr2g097520' => 'mtr', 'Medtr4g021800' => 'mtr', 'Medtr4g021825' => 'mtr', 'Medtr4g064270' => 'mtr', 'Medtr4g064380' => 'mtr', 'Medtr7g062150' => 'mtr', 'MELO3C003138.2' => 'cme', 'MELO3C005187.2' => 'cme', 'MELO3C009252.2' => 'cme', 'MELO3C014481.2' => 'cme', 'MELO3C020616.2' => 'cme', 'MELO3C020617.2' => 'cme', 'MELO3C020618.2' => 'cme', 'Migut.G00328' => 'egut', 'Migut.J00320' => 'egut', 'Migut.L01000' => 'egut', 'Migut.L01953' => 'egut', 'MSTRG.10253' => 'ama', 'MSTRG.19077' => 'ama', 'MSTRG.26780' => 'ama', 'MSTRG.4023' => 'ama', 'MSTRG.5655' => 'ama', 'MSTRG.9992' => 'ama', 'Nitab4.5_0000043g0310' => 'nta', 'Nitab4.5_0000463g0080' => 'nta', 'Nitab4.5_0000705g0170' => 'nta', 'Nitab4.5_0001326g0060' => 'nta', 'Nitab4.5_0001628g0030' => 'nta', 'Nitab4.5_0002103g0110' => 'nta', 'Nitab4.5_0002946g0030' => 'nta', 'Nitab4.5_0004639g0030' => 'nta', 'Nn2g11149' => 'nnu', 'Nn2g13389' => 'nnu', 'Nn4g25326' => 'nnu', 'Nn4g26290' => 'nnu', 'Nn5g29865' => 'nnu', 'Oeu004163.1' => 'oeu', 'Oeu006901.1' => 'oeu', 'Oeu010096.1' => 'oeu', 'Oeu024340.1' => 'oeu', 'Oeu048369.1' => 'oeu', 'Os01g0973000' => 'osa', 'Os03g0273800' => 'osa', 'Os03g0701200' => 'osa', 'Os03g0834050' => 'osa', 'Os07g0634400' => 'osa', 'Peaxi162Scf00092g01414' => 'pax', 'Peaxi162Scf00165g00818' => 'pax', 'Peaxi162Scf00309g00516' => 'pax', 'Peaxi162Scf00774g00218' => 'pax', 'PGR004G1824' => 'pgr', 'PGR004G2606' => 'pgr', 'PGR031G2716' => 'pgr', 'PGR102G2460' => 'pgr', 'PGR142G2599' => 'pgr', 'PGSC0003DMG400000843' => 'stu', 'PGSC0003DMG400008829' => 'stu', 'PGSC0003DMG400030418' => 'stu', 'PGSC0003DMG400031834' => 'stu', 'PGSC0003DMG401028300' => 'stu', 'PGSC0003DMG402028300' => 'stu', 'Phvul.001G219300' => 'pvu', 'Phvul.007G056000' => 'pvu', 'Phvul.007G208000' => 'pvu', 'Phvul.008G119500' => 'pvu', 'Phvul.010G011200' => 'pvu', 'Phvul.010G014800' => 'pvu', 'Phvul.011G062900' => 'pvu', 'Phvul.L007043' => 'pvu', 'Potri.001G242300' => 'ptr', 'Potri.002G185300' => 'ptr', 'Potri.006G086900' => 'ptr', 'Potri.008G151700' => 'ptr', 'Potri.009G033500' => 'ptr', 'Potri.010G089300' => 'ptr', 'Potri.014G110800' => 'ptr', 'Pp3c27_8130' => 'ppa', 'Pp3c6_27410' => 'ppa', 'PRCOL_00001659' => 'pco', 'PRCOL_00001927' => 'pco', 'PRCOL_00003649' => 'pco', 'Prupe.1G011600' => 'ppe', 'Prupe.3G000800' => 'ppe', 'Prupe.3G001100' => 'ppe', 'Prupe.6G072700' => 'ppe', 'Prupe.6G072800' => 'ppe', 'Prupe.6G257300' => 'ppe', 'Prupe.8G033000' => 'ppe', 'Psat0s2633g0080' => 'psa', 'Psat0s3396g0080' => 'psa', 'Psat0s3396g0200' => 'psa', 'Psat3g139080' => 'psa', 'Psat5g285080' => 'psa', 'Psat6g157760' => 'psa', 'Psat6g208440' => 'psa', 'Psat7g215320' => 'psa', 'Psat7g215400' => 'psa', 'Psat7g235600' => 'psa', 'Psat7g235760' => 'psa', 'PSO063G4603' => 'pso', 'PSO210G0182' => 'pso', 'PSO210G0196' => 'pso', 'PSO339G0394' => 'pso', 'PSO339G4127' => 'pso', 'PSO513G0064' => 'pso', 'PSO761G0079' => 'pso', 'QL01p031003' => 'qlo', 'QL01p031078' => 'qlo', 'QL06p003004' => 'qlo', 'QL07p048731' => 'qlo', 'QL09p037427' => 'qlo', 'RcHm_v2.0_Chr3g0466361' => 'rch', 'RcHm_v2.0_Chr3g0485571' => 'rch', 'RcHm_v2.0_Chr4g0416551' => 'rch', 'RcHm_v2.0_Chr5g0065831' => 'rch', 'Rhsim01G0230500' => 'rsi', 'Rhsim05G0194000' => 'rsi', 'Rhsim08G0250400' => 'rsi', 'Sabra02G0131000' => 'sbr', 'Sabra06G0066300' => 'sbr', 'Sabra08G0115500' => 'sbr', 'Sabra09G0023900' => 'sbr', 'Sabra10G0054000' => 'sbr', 'Sabra14G0081500' => 'sbr', 'Sabra16G0147100' => 'sbr', 'SalBow2G2957' => 'sbo', 'SalBow4G3320' => 'sbo', 'SalBow8G1894' => 'sbo', 'Sc07g0007950' => 'sci', 'Sc12g0001360' => 'sci', 'Sc13g0004330' => 'sci', 'Sc20g0005010' => 'sci', 'Sed0000361' => 'sed', 'Sed0001706' => 'sed', 'Sed0002422' => 'sed', 'Sed0004029' => 'sed', 'Sed0004602' => 'sed', 'Sed0004943' => 'sed', 'Sed0008646' => 'sed', 'Sed0023313' => 'sed', 'Sed0024843' => 'sed', 'SEGI_00081' => 'sgi', 'SEGI_00947' => 'sgi', 'SEGI_04046' => 'sgi', 'SEGI_06880' => 'sgi', 'SEGI_09736' => 'sgi', 'SEGI_12741' => 'sgi', 'SEGI_14530' => 'sgi', 'SEGI_20705' => 'sgi', 'SEGI_26088' => 'sgi', 'SEGI_28323' => 'sgi', 'SEGI_33343' => 'sgi', 'SGA_v2.0_scaffold126G33775' => 'sas', 'SGA_v2.0_scaffold2G01337' => 'sas', 'SGA_v2.0_scaffold38G15006' => 'sas', 'SGA_v2.0_scaffold39G15264' => 'sas', 'SGA_v2.0_scaffold453G51880' => 'sas', 'SHI12696' => 'shi', 'SMO367G1096' => 'smo', 'Solyc01g068630.3' => 'sly', 'Solyc05g011880.3' => 'sly', 'Solyc06g076300.3' => 'sly', 'Solyc09g010940.4' => 'sly', 'Solyc09g075890.3' => 'sly', 'Sopen01g030560' => 'spe', 'Sopen05g006630' => 'spe', 'Sopen06g032720' => 'spe', 'Sopen09g005660' => 'spe', 'Sopen09g030690' => 'spe', 'Sp4g14540' => 'spa', 'Sp4g20030' => 'spa', 'Sp5g01320' => 'spa', 'Sp6g21170' => 'spa', 'Sp6g21180' => 'spa', 'Sp6g21190' => 'spa', 'Sp6g40220' => 'spa', 'TAR362G0122' => 'tar', 'TAR362G1338' => 'tar', 'TAR369G0590' => 'tar', 'TAR371G0824' => 'tar', 'TAR622G1429' => 'tar', 'TAR623G0734' => 'tar', 'TAR625G0441' => 'tar', 'TAR629G0976' => 'tar', 'TAR633G1195' => 'tar', 'TAR636G2660' => 'tar', 'THA.LOC104799440' => 'tha', 'THA.LOC104800966' => 'tha', 'THA.LOC104806559' => 'tha', 'THA.LOC104810765' => 'tha', 'THA.LOC104816266' => 'tha', 'THA.LOC104817419' => 'tha', 'THA.LOC104827021' => 'tha', 'Thecc.01G327400' => 'tca', 'Thecc.04G229200' => 'tca', 'Thecc.05G037400' => 'tca', 'Thecc.09G318600' => 'tca', 'Thecc.09G318700' => 'tca', 'Thhalv10006238m.g' => 'esa', 'Thhalv10014321m.g' => 'esa', 'Thhalv10014335m.g' => 'esa', 'Thhalv10015826m.g' => 'esa', 'Thhalv10017107m.g' => 'esa', 'Thhalv10017180m.g' => 'esa', 'Thhalv10029339m.g' => 'esa', 'TPR.G1699' => 'tpr', 'TPR.G23609' => 'tpr', 'TPR.G3081' => 'tpr', 'TPR.G40397' => 'tpr', 'TPR.G5522' => 'tpr', 'TPR.G5618' => 'tpr', 'TPR.G5626' => 'tpr', 'TWI09G1632' => 'twi', 'TWI23G1230' => 'twi', 'TWI53G1064' => 'twi', 'TWI59G0751' => 'twi', 'TWI74G0947' => 'twi', 'TWI77G0337' => 'twi', 'TWI79G1254' => 'twi', 'unitig_0.g2341' => 'ugi', 'unitig_26.g10006' => 'ugi', 'unitig_26.g10008' => 'ugi', 'unitig_26.g9192' => 'ugi', 'vmacro14547' => 'vma', 'vmacro15333' => 'vma', 'vmacro18743' => 'vma', 'vmacro20166' => 'vma', 'VMungo0331G0523' => 'vmu', 'VMungo0331G1202' => 'vmu', 'VMungo0720G1228' => 'vmu', 'VMungo0720G1514' => 'vmu', 'VMungo1080G0169' => 'vmu', 'VMungo1127G1475' => 'vmu', 'VMungo1383G1208' => 'vmu', 'VMungo1383G1698' => 'vmu', 'Zm00001eb012270' => 'zma', 'Zm00001eb054100' => 'zma', 'Zm00001eb063350' => 'zma', 'Zm00001eb328560' => 'zma', 'Zm00001eb342820' => 'zma', 'Zm00001eb362210' => 'zma', 'Zm00001eb397730' => 'zma', 'Zm00001eb399750' => 'zma' ) $gf_id = 'HOM05D000959' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000959' ) $data_identifier = 'HOM05D000959' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 5, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 5, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 10, 'mbi' => (int) 3, 'mco' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 2, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 3, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 11, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399750' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000959', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '622', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p07100' => 'bna', 'A03p11720' => 'bna', 'A05p08300' => 'bna', 'A05p13380' => 'bna', 'A09p54130' => 'bna', 'A10p16690' => 'bna', 'A10p16700' => 'bna', 'A10p33390' => 'bna', 'Aa31LG10G16020' => 'aar', 'Aa31LG1G11810' => 'aar', 'Aa31LG1G11830' => 'aar', 'Aa31LG1G22510' => 'aar', 'Aa31LG5G4890' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5793' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2310' => 'aag', 'Actinidia08499' => 'ach', 'Actinidia11262' => 'ach', 'Actinidia23926' => 'ach', 'Actinidia34420' => 'ach', 'Actinidia36970' => 'ach', 'Ah.02g111220' => 'amhyb', 'Ah.15g097750' => 'amhyb', 'AL4G27500' => 'aly', 'AL6G11470' => 'aly', 'AL8G35950' => 'aly', 'AL8G35960' => 'aly', 'AL8G35970' => 'aly', 'Aqoxy1G00912' => 'aox', 'Aqoxy2G02253' => 'aox', 'Aqoxy2G02411' => 'aox', 'Aqoxy5G00485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BZ66YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K8ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM4FUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6BF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HFV7XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25JBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0YNNV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MAKK6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P70IT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP2Z6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V61LZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YWP64R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3S9AI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7PGHH' => 'arhy', 'AT2G32150' => 'ath', 'AT3G62040' => 'ath', 'AT5G02230' => 'ath', 'AT5G59480' => 'ath', 'AT5G59490' => 'ath', 'ATR0332G060' => 'atr', 'ATR0559G190' => 'atr', 'ATR0693G294' => 'atr', 'Atru.chr3.3975' => 'acertr', 'Atru.chr3.3976' => 'acertr', 'Atru.chr3.3977' => 'acertr', 'Atru.chr4.2498' => 'acertr', 'Atru.chr5.838' => 'acertr', 'Atru.chr8.1990' => 'acertr', 'Atru.chr8.1991' => 'acertr', 'Atru.chr8.1992' => 'acertr', 'AUR62001759' => 'cqu', 'AUR62009545' => 'cqu', 'AUR62010474' => 'cqu', 'AUR62025820' => 'cqu', 'AUR62030422' => 'cqu', 'AUR62033605' => 'cqu', 'AUR62038615' => 'cqu', 'AUR62041347' => 'cqu', 'BcaB01g04574' => 'bca', 'BcaB02g09263' => 'bca', 'BcaB02g10453' => 'bca', 'BcaB05g22513' => 'bca', 'BcaB08g36253' => 'bca', 'BcaB08g36254' => 'bca', 'BcaC01g06519' => 'bca', 'BcaC02g11889' => 'bca', 'BcaC03g14010' => 'bca', 'BcaC03g18439' => 'bca', 'BcaC04g19765' => 'bca', 'BcaC09g48432' => 'bca', 'BcaNung07302' => 'bca', 'BolC2t06040H' => 'bol', 'BolC2t07346H' => 'bol', 'BolC3t13817H' => 'bol', 'BolC4t22625H' => 'bol', 'BolC4t23297H' => 'bol', 'BolC8t51278H' => 'bol', 'BolC9t58050H' => 'bol', 'BolC9t58051H' => 'bol', 'BolC9t60163H' => 'bol', 'BraA02t04712Z' => 'bra', 'BraA02t05791Z' => 'bra', 'BraA03t10483Z' => 'bra', 'BraA05t19795Z' => 'bra', 'BraA05t20276Z' => 'bra', 'BraA09t40827Z' => 'bra', 'BraA10t43750Z' => 'bra', 'BraA10t43751Z' => 'bra', 'BraA10t45370Z' => 'bra', 'C02p00400' => 'bna', 'C02p12460' => 'bna', 'C03p13680' => 'bna', 'C04p10270' => 'bna', 'C04p17500' => 'bna', 'C08p37010' => 'bna', 'C09p51880' => 'bna', 'C09p51890' => 'bna', 'C09p74300' => 'bna', 'CAN.G179.26' => 'can', 'CAN.G3384.1' => 'can', 'CAN.G394.68' => 'can', 'CAN.G907.13' => 'can', 'CANSAT11G0012' => 'cansat', 'CANSAT25G1586' => 'cansat', 'CANSAT35G0735' => 'cansat', 'CANSAT54G0556' => 'cansat', 'CANSAT64G0356' => 'cansat', 'CANSAT78G2042' => 'cansat', 'CARHR125920' => 'chi', 'CARHR131910' => 'chi', 'CARHR172390' => 'chi', 'CARHR211140' => 'chi', 'CARHR285850' => 'chi', 'CARHR285860' => 'chi', 'Carub.0004s1347' => 'cru', 'Carub.0004s1960' => 'cru', 'Carub.0005s2880' => 'cru', 'Carub.0006s0107' => 'cru', 'Carub.0008s2015' => 'cru', 'Carub.0008s2016' => 'cru', 'Carub.0008s2017' => 'cru', 'Ca_01315_v3' => 'car', 'Ca_05063_v3' => 'car', 'Ca_10231_v3' => 'car', 'Ca_10913_v3' => 'car', 'Ca_19156_v3' => 'car', 'Ca_23644_v3' => 'car', 'Ca_26735_v3' => 'car', 'Cc01_g13130' => 'ccan', 'Cc02_g21690' => 'ccan', 'Cc03_g03600' => 'ccan', 'Cc06_g02510' => 'ccan', 'CDE02G1265' => 'cde', 'CDE05G0415' => 'cde', 'CDE08G1082' => 'cde', 'Cfa005780' => 'cfa', 'Cfa011522' => 'cfa', 'Cfa011523' => 'cfa', 'Cfa015627' => 'cfa', 'Cfa017359' => 'cfa', 'Ciclev10005687m.g' => 'ccl', 'Ciclev10012173m.g' => 'ccl', 'Ciclev10021621m.g' => 'ccl', 'Ciclev10028968m.g' => 'ccl', 'Ciclev10029907m.g' => 'ccl', 'CiPaw.01G164800' => 'cil', 'CiPaw.07G083700' => 'cil', 'CiPaw.07G127000' => 'cil', 'CiPaw.07G136900' => 'cil', 'CiPaw.08G081700' => 'cil', 'CiPaw.09G194600' => 'cil', 'CiPaw.10G146500' => 'cil', 'CiPaw.13G091500' => 'cil', 'CiPaw.13G091600' => 'cil', 'ClCG00G003390' => 'cla', 'ClCG01G007220' => 'cla', 'ClCG03G001370' => 'cla', 'ClCG04G008100' => 'cla', 'ClCG06G006110' => 'cla', 'ClCG06G006130' => 'cla', 'ClCG10G021210' => 'cla', 'COL.COLO4_07648' => 'col', 'COL.COLO4_07650' => 'col', 'COL.COLO4_07651' => 'col', 'COL.COLO4_14780' => 'col', 'COL.COLO4_18546' => 'col', 'COL.COLO4_18547' => 'col', 'COL.COLO4_23103' => 'col', 'COL.COLO4_30419' => 'col', 'COL.COLO4_34232' => 'col', 'Cpa.g.sc169.20' => 'cpa', 'Cpa.g.sc57.45' => 'cpa', 'Cpa.g.sc58.124' => 'cpa', 'Cpa.g.sc58.125' => 'cpa', 'Cpa.g.sc81.118' => 'cpa', 'Cpa.g.sc81.119' => 'cpa', 'Cre12.g524700' => 'cre', 'CsaV3_1G034430' => 'csa', 'CsaV3_1G034440' => 'csa', 'CsaV3_1G034450' => 'csa', 'CsaV3_3G034830' => 'csa', 'CsaV3_4G025090' => 'csa', 'CsaV3_5G018660' => 'csa', 'CsaV3_6G038160' => 'csa', 'CSS0003447' => 'camsi', 'CSS0017840' => 'camsi', 'CSS0019260' => 'camsi', 'CSS0040375' => 'camsi', 'CSS0042533' => 'camsi', 'DCAR_005960' => 'dca', 'DCAR_012104' => 'dca', 'DCAR_012105' => 'dca', 'DCAR_012293' => 'dca', 'DCAR_015632' => 'dca', 'DCAR_024602' => 'dca', 'DCAR_028752' => 'dca', 'Dinv06261' => 'din', 'Dinv13982' => 'din', 'Dinv17029' => 'din', 'Dinv18463' => 'din', 'Dinv33181' => 'din', 'Dinv35585' => 'din', 'Dinv37161' => 'din', 'Dinv42977' => 'din', 'Dinv43122' => 'din', 'Dinv44517' => 'din', 'Duzib093G0256' => 'dzi', 'Duzib106G1254' => 'dzi', 'Duzib128G1789' => 'dzi', 'Duzib133G0633' => 'dzi', 'Duzib138G0510' => 'dzi', 'Duzib150G1084' => 'dzi', 'Duzib168G0488' => 'dzi', 'Duzib168G1523' => 'dzi', 'Duzib170G0133' => 'dzi', 'ECA234G1433' => 'eca', 'ECA236G1432' => 'eca', 'ECA236G2256' => 'eca', 'ECA236G2365' => 'eca', 'ECA236G4830' => 'eca', 'ECA248G1505' => 'eca', 'EL10Ac3g06431' => 'bvu', 'EL10Ac5g12577' => 'bvu', 'EL10Ac6g13533' => 'bvu', 'EL10Ac7g16045' => 'bvu', 'Eucgr.A01281' => 'egr', 'Eucgr.B02326' => 'egr', 'Eucgr.H03532' => 'egr', 'Eucgr.K00553' => 'egr', 'Eucgr.K03116' => 'egr', 'FAN02G3963' => 'fan', 'FAN05G0438' => 'fan', 'FAN09G2434' => 'fan', 'FAN12G3984' => 'fan', 'FAN14G0798' => 'fan', 'FAN17G0652' => 'fan', 'FAN19G1988' => 'fan', 'FAN22G0632' => 'fan', 'FAN23G0387' => 'fan', 'FAN26G1323' => 'fan', 'FAN28G0666' => 'fan', 'FvH4_1g26080' => 'fve', 'FvH4_3g36780' => 'fve', 'FvH4_4g15270' => 'fve', 'FvH4_6g13490' => 'fve', 'Glyma.01G098700' => 'gma', 'Glyma.03G065900' => 'gma', 'Glyma.03G073754' => 'gma', 'Glyma.03G073758' => 'gma', 'Glyma.03G083200' => 'gma', 'Glyma.03G225500' => 'gma', 'Glyma.05G037766' => 'gma', 'Glyma.07G133500' => 'gma', 'Glyma.10G139400' => 'gma', 'Glyma.10G248900' => 'gma', 'Glyma.11G137800' => 'gma', 'Glyma.12G061300' => 'gma', 'Glyma.13G337900' => 'gma', 'Glyma.15G036600' => 'gma', 'Glyma.18G182800' => 'gma', 'Glyma.19G222500' => 'gma', 'Glyma.20G144800' => 'gma', 'Gohir.A01G222000' => 'ghi', 'Gohir.A03G044000' => 'ghi', 'Gohir.A03G044100' => 'ghi', 'Gohir.A04G083100' => 'ghi', 'Gohir.A07G127200' => 'ghi', 'Gohir.A07G132400' => 'ghi', 'Gohir.A08G000700' => 'ghi', 'Gohir.A11G327300' => 'ghi', 'Gohir.D01G211500' => 'ghi', 'Gohir.D03G123400' => 'ghi', 'Gohir.D03G123500' => 'ghi', 'Gohir.D04G121800' => 'ghi', 'Gohir.D07G131500' => 'ghi', 'Gohir.D07G136600' => 'ghi', 'Gohir.D08G011600' => 'ghi', 'Gohir.D11G346200' => 'ghi', 'Gorai.001G142800' => 'gra', 'Gorai.001G148700' => 'gra', 'Gorai.002G257300' => 'gra', 'Gorai.003G130000' => 'gra', 'Gorai.003G130100' => 'gra', 'Gorai.004G005300' => 'gra', 'Gorai.007G376500' => 'gra', 'Gorai.012G104700' => 'gra', 'GSVIVG01017946001' => 'vvi', 'GSVIVG01024928001' => 'vvi', 'GSVIVG01028227001' => 'vvi', 'GSVIVG01034151001' => 'vvi', 'HanXRQChr05g0135031' => 'han', 'HanXRQChr05g0135041' => 'han', 'HanXRQChr05g0140021' => 'han', 'HanXRQChr06g0178981' => 'han', 'HanXRQChr07g0188251' => 'han', 'HanXRQChr08g0235311' => 'han', 'HanXRQChr09g0271011' => 'han', 'HanXRQChr10g0293321' => 'han', 'HanXRQChr13g0388171' => 'han', 'Haze_00916' => 'cav', 'Haze_05063' => 'cav', 'Haze_20814' => 'cav', 'Haze_24128' => 'cav', 'Hma1.2p1_0745F.1_g212010' => 'hma', 'Hma1.2p1_0757F.1_g213260' => 'hma', 'Hma1.2p1_0936F.1_g238840' => 'hma', 'Hma1.2p1_1735F.1_g299890' => 'hma', 'Hma1.2p1_1861F.1_g305685' => 'hma', 'HPP92_003397' => 'vpl', 'HPP92_012597' => 'vpl', 'HPP92_015520' => 'vpl', 'HPP92_015539' => 'vpl', 'HPP92_020373' => 'vpl', 'Hund04938' => 'sun', 'Hund10677' => 'sun', 'Hund11033' => 'sun', 'Hund12155' => 'sun', 'Lalb_Chr01g0022551' => 'lal', 'Lalb_Chr03g0042341' => 'lal', 'Lalb_Chr07g0192931' => 'lal', 'Lalb_Chr12g0209551' => 'lal', 'Lalb_Chr19g0125251' => 'lal', 'Lalb_Chr19g0137891' => 'lal', 'Lalb_Chr21g0304641' => 'lal', 'Lalb_Chr21g0309881' => 'lal', 'Lj1A5T12' => 'lonja', 'Lj1C148G10' => 'lonja', 'Lj2A93T83' => 'lonja', 'Lj3A738G68' => 'lonja', 'Lj3C966T1' => 'lonja', 'Lj3g0018958' => 'lja', 'Lj3g0021831' => 'lja', 'Lj3g0025443' => 'lja', 'Lj4g0026809' => 'lja', 'Lj5g0012558' => 'lja', 'Lj5g0021586' => 'lja', 'Lsat_1_v5_gn_5_156840' => 'lsa', 'Lsat_1_v5_gn_8_73460' => 'lsa', 'Lsat_1_v5_gn_8_73481' => 'lsa', 'Lsat_1_v5_gn_9_31601' => 'lsa', 'Lsat_1_v5_gn_9_77320' => 'lsa', 'Manes.01G171300' => 'mes', 'Manes.01G171400' => 'mes', 'Manes.01G236100' => 'mes', 'Manes.02G130500' => 'mes', 'Manes.02G130600' => 'mes', 'Manes.03G180200' => 'mes', 'Manes.05G007000' => 'mes', 'Manes.08G084400' => 'mes', 'Manes.09G092600' => 'mes', 'Manes.15G027900' => 'mes', 'MBI04_g40948_MAGBIO' => 'mbi', 'MBI14_g12123_MAGBIO' => 'mbi', 'MBI18_g28915_MAGBIO' => 'mbi', 'MCO09G053' => 'mco', 'MCO11G782' => 'mco', 'MCO15G215' => 'mco', 'MD03G1088500' => 'mdo', 'MD03G1088600' => 'mdo', 'MD04G1130800' => 'mdo', 'MD09G1291700' => 'mdo', 'MD11G1097500' => 'mdo', 'MD11G1097600' => 'mdo', 'MD12G1143900' => 'mdo', 'MD13G1191400' => 'mdo', 'MD16G1191500' => 'mdo', 'Medtr1g085570' => 'mtr', 'Medtr1g104610' => 'mtr', 'Medtr2g097520' => 'mtr', 'Medtr4g021800' => 'mtr', 'Medtr4g021825' => 'mtr', 'Medtr4g064270' => 'mtr', 'Medtr4g064380' => 'mtr', 'Medtr7g062150' => 'mtr', 'MELO3C003138.2' => 'cme', 'MELO3C005187.2' => 'cme', 'MELO3C009252.2' => 'cme', 'MELO3C014481.2' => 'cme', 'MELO3C020616.2' => 'cme', 'MELO3C020617.2' => 'cme', 'MELO3C020618.2' => 'cme', 'Migut.G00328' => 'egut', 'Migut.J00320' => 'egut', 'Migut.L01000' => 'egut', 'Migut.L01953' => 'egut', 'MSTRG.10253' => 'ama', 'MSTRG.19077' => 'ama', 'MSTRG.26780' => 'ama', 'MSTRG.4023' => 'ama', 'MSTRG.5655' => 'ama', 'MSTRG.9992' => 'ama', 'Nitab4.5_0000043g0310' => 'nta', 'Nitab4.5_0000463g0080' => 'nta', 'Nitab4.5_0000705g0170' => 'nta', 'Nitab4.5_0001326g0060' => 'nta', 'Nitab4.5_0001628g0030' => 'nta', 'Nitab4.5_0002103g0110' => 'nta', 'Nitab4.5_0002946g0030' => 'nta', 'Nitab4.5_0004639g0030' => 'nta', 'Nn2g11149' => 'nnu', 'Nn2g13389' => 'nnu', 'Nn4g25326' => 'nnu', 'Nn4g26290' => 'nnu', 'Nn5g29865' => 'nnu', 'Oeu004163.1' => 'oeu', 'Oeu006901.1' => 'oeu', 'Oeu010096.1' => 'oeu', 'Oeu024340.1' => 'oeu', 'Oeu048369.1' => 'oeu', 'Os01g0973000' => 'osa', 'Os03g0273800' => 'osa', 'Os03g0701200' => 'osa', 'Os03g0834050' => 'osa', 'Os07g0634400' => 'osa', 'Peaxi162Scf00092g01414' => 'pax', 'Peaxi162Scf00165g00818' => 'pax', 'Peaxi162Scf00309g00516' => 'pax', 'Peaxi162Scf00774g00218' => 'pax', 'PGR004G1824' => 'pgr', 'PGR004G2606' => 'pgr', 'PGR031G2716' => 'pgr', 'PGR102G2460' => 'pgr', 'PGR142G2599' => 'pgr', 'PGSC0003DMG400000843' => 'stu', 'PGSC0003DMG400008829' => 'stu', 'PGSC0003DMG400030418' => 'stu', 'PGSC0003DMG400031834' => 'stu', 'PGSC0003DMG401028300' => 'stu', 'PGSC0003DMG402028300' => 'stu', 'Phvul.001G219300' => 'pvu', 'Phvul.007G056000' => 'pvu', 'Phvul.007G208000' => 'pvu', 'Phvul.008G119500' => 'pvu', 'Phvul.010G011200' => 'pvu', 'Phvul.010G014800' => 'pvu', 'Phvul.011G062900' => 'pvu', 'Phvul.L007043' => 'pvu', 'Potri.001G242300' => 'ptr', 'Potri.002G185300' => 'ptr', 'Potri.006G086900' => 'ptr', 'Potri.008G151700' => 'ptr', 'Potri.009G033500' => 'ptr', 'Potri.010G089300' => 'ptr', 'Potri.014G110800' => 'ptr', 'Pp3c27_8130' => 'ppa', 'Pp3c6_27410' => 'ppa', 'PRCOL_00001659' => 'pco', 'PRCOL_00001927' => 'pco', 'PRCOL_00003649' => 'pco', 'Prupe.1G011600' => 'ppe', 'Prupe.3G000800' => 'ppe', 'Prupe.3G001100' => 'ppe', 'Prupe.6G072700' => 'ppe', 'Prupe.6G072800' => 'ppe', 'Prupe.6G257300' => 'ppe', 'Prupe.8G033000' => 'ppe', 'Psat0s2633g0080' => 'psa', 'Psat0s3396g0080' => 'psa', 'Psat0s3396g0200' => 'psa', 'Psat3g139080' => 'psa', 'Psat5g285080' => 'psa', 'Psat6g157760' => 'psa', 'Psat6g208440' => 'psa', 'Psat7g215320' => 'psa', 'Psat7g215400' => 'psa', 'Psat7g235600' => 'psa', 'Psat7g235760' => 'psa', 'PSO063G4603' => 'pso', 'PSO210G0182' => 'pso', 'PSO210G0196' => 'pso', 'PSO339G0394' => 'pso', 'PSO339G4127' => 'pso', 'PSO513G0064' => 'pso', 'PSO761G0079' => 'pso', 'QL01p031003' => 'qlo', 'QL01p031078' => 'qlo', 'QL06p003004' => 'qlo', 'QL07p048731' => 'qlo', 'QL09p037427' => 'qlo', 'RcHm_v2.0_Chr3g0466361' => 'rch', 'RcHm_v2.0_Chr3g0485571' => 'rch', 'RcHm_v2.0_Chr4g0416551' => 'rch', 'RcHm_v2.0_Chr5g0065831' => 'rch', 'Rhsim01G0230500' => 'rsi', 'Rhsim05G0194000' => 'rsi', 'Rhsim08G0250400' => 'rsi', 'Sabra02G0131000' => 'sbr', 'Sabra06G0066300' => 'sbr', 'Sabra08G0115500' => 'sbr', 'Sabra09G0023900' => 'sbr', 'Sabra10G0054000' => 'sbr', 'Sabra14G0081500' => 'sbr', 'Sabra16G0147100' => 'sbr', 'SalBow2G2957' => 'sbo', 'SalBow4G3320' => 'sbo', 'SalBow8G1894' => 'sbo', 'Sc07g0007950' => 'sci', 'Sc12g0001360' => 'sci', 'Sc13g0004330' => 'sci', 'Sc20g0005010' => 'sci', 'Sed0000361' => 'sed', 'Sed0001706' => 'sed', 'Sed0002422' => 'sed', 'Sed0004029' => 'sed', 'Sed0004602' => 'sed', 'Sed0004943' => 'sed', 'Sed0008646' => 'sed', 'Sed0023313' => 'sed', 'Sed0024843' => 'sed', 'SEGI_00081' => 'sgi', 'SEGI_00947' => 'sgi', 'SEGI_04046' => 'sgi', 'SEGI_06880' => 'sgi', 'SEGI_09736' => 'sgi', 'SEGI_12741' => 'sgi', 'SEGI_14530' => 'sgi', 'SEGI_20705' => 'sgi', 'SEGI_26088' => 'sgi', 'SEGI_28323' => 'sgi', 'SEGI_33343' => 'sgi', 'SGA_v2.0_scaffold126G33775' => 'sas', 'SGA_v2.0_scaffold2G01337' => 'sas', 'SGA_v2.0_scaffold38G15006' => 'sas', 'SGA_v2.0_scaffold39G15264' => 'sas', 'SGA_v2.0_scaffold453G51880' => 'sas', 'SHI12696' => 'shi', 'SMO367G1096' => 'smo', 'Solyc01g068630.3' => 'sly', 'Solyc05g011880.3' => 'sly', 'Solyc06g076300.3' => 'sly', 'Solyc09g010940.4' => 'sly', 'Solyc09g075890.3' => 'sly', 'Sopen01g030560' => 'spe', 'Sopen05g006630' => 'spe', 'Sopen06g032720' => 'spe', 'Sopen09g005660' => 'spe', 'Sopen09g030690' => 'spe', 'Sp4g14540' => 'spa', 'Sp4g20030' => 'spa', 'Sp5g01320' => 'spa', 'Sp6g21170' => 'spa', 'Sp6g21180' => 'spa', 'Sp6g21190' => 'spa', 'Sp6g40220' => 'spa', 'TAR362G0122' => 'tar', 'TAR362G1338' => 'tar', 'TAR369G0590' => 'tar', 'TAR371G0824' => 'tar', 'TAR622G1429' => 'tar', 'TAR623G0734' => 'tar', 'TAR625G0441' => 'tar', 'TAR629G0976' => 'tar', 'TAR633G1195' => 'tar', 'TAR636G2660' => 'tar', 'THA.LOC104799440' => 'tha', 'THA.LOC104800966' => 'tha', 'THA.LOC104806559' => 'tha', 'THA.LOC104810765' => 'tha', 'THA.LOC104816266' => 'tha', 'THA.LOC104817419' => 'tha', 'THA.LOC104827021' => 'tha', 'Thecc.01G327400' => 'tca', 'Thecc.04G229200' => 'tca', 'Thecc.05G037400' => 'tca', 'Thecc.09G318600' => 'tca', 'Thecc.09G318700' => 'tca', 'Thhalv10006238m.g' => 'esa', 'Thhalv10014321m.g' => 'esa', 'Thhalv10014335m.g' => 'esa', 'Thhalv10015826m.g' => 'esa', 'Thhalv10017107m.g' => 'esa', 'Thhalv10017180m.g' => 'esa', 'Thhalv10029339m.g' => 'esa', 'TPR.G1699' => 'tpr', 'TPR.G23609' => 'tpr', 'TPR.G3081' => 'tpr', 'TPR.G40397' => 'tpr', 'TPR.G5522' => 'tpr', 'TPR.G5618' => 'tpr', 'TPR.G5626' => 'tpr', 'TWI09G1632' => 'twi', 'TWI23G1230' => 'twi', 'TWI53G1064' => 'twi', 'TWI59G0751' => 'twi', 'TWI74G0947' => 'twi', 'TWI77G0337' => 'twi', 'TWI79G1254' => 'twi', 'unitig_0.g2341' => 'ugi', 'unitig_26.g10006' => 'ugi', 'unitig_26.g10008' => 'ugi', 'unitig_26.g9192' => 'ugi', 'vmacro14547' => 'vma', 'vmacro15333' => 'vma', 'vmacro18743' => 'vma', 'vmacro20166' => 'vma', 'VMungo0331G0523' => 'vmu', 'VMungo0331G1202' => 'vmu', 'VMungo0720G1228' => 'vmu', 'VMungo0720G1514' => 'vmu', 'VMungo1080G0169' => 'vmu', 'VMungo1127G1475' => 'vmu', 'VMungo1383G1208' => 'vmu', 'VMungo1383G1698' => 'vmu', 'Zm00001eb012270' => 'zma', 'Zm00001eb054100' => 'zma', 'Zm00001eb063350' => 'zma', 'Zm00001eb328560' => 'zma', 'Zm00001eb342820' => 'zma', 'Zm00001eb362210' => 'zma', 'Zm00001eb397730' => 'zma', 'Zm00001eb399750' => 'zma' ), 'gf_id' => 'HOM05D000959', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000959' ), 'data_identifier' => 'HOM05D000959', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000959', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '622', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p07100' => 'bna', 'A03p11720' => 'bna', 'A05p08300' => 'bna', 'A05p13380' => 'bna', 'A09p54130' => 'bna', 'A10p16690' => 'bna', 'A10p16700' => 'bna', 'A10p33390' => 'bna', 'Aa31LG10G16020' => 'aar', 'Aa31LG1G11810' => 'aar', 'Aa31LG1G11830' => 'aar', 'Aa31LG1G22510' => 'aar', 'Aa31LG5G4890' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5793' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2310' => 'aag', 'Actinidia08499' => 'ach', 'Actinidia11262' => 'ach', 'Actinidia23926' => 'ach', 'Actinidia34420' => 'ach', 'Actinidia36970' => 'ach', 'Ah.02g111220' => 'amhyb', 'Ah.15g097750' => 'amhyb', 'AL4G27500' => 'aly', 'AL6G11470' => 'aly', 'AL8G35950' => 'aly', 'AL8G35960' => 'aly', 'AL8G35970' => 'aly', 'Aqoxy1G00912' => 'aox', 'Aqoxy2G02253' => 'aox', 'Aqoxy2G02411' => 'aox', 'Aqoxy5G00485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BZ66YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K8ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM4FUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6BF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HFV7XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25JBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0YNNV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MAKK6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P70IT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP2Z6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V61LZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YWP64R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3S9AI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7PGHH' => 'arhy', 'AT2G32150' => 'ath', 'AT3G62040' => 'ath', 'AT5G02230' => 'ath', 'AT5G59480' => 'ath', 'AT5G59490' => 'ath', 'ATR0332G060' => 'atr', 'ATR0559G190' => 'atr', 'ATR0693G294' => 'atr', 'Atru.chr3.3975' => 'acertr', 'Atru.chr3.3976' => 'acertr', 'Atru.chr3.3977' => 'acertr', 'Atru.chr4.2498' => 'acertr', 'Atru.chr5.838' => 'acertr', 'Atru.chr8.1990' => 'acertr', 'Atru.chr8.1991' => 'acertr', 'Atru.chr8.1992' => 'acertr', 'AUR62001759' => 'cqu', 'AUR62009545' => 'cqu', 'AUR62010474' => 'cqu', 'AUR62025820' => 'cqu', 'AUR62030422' => 'cqu', 'AUR62033605' => 'cqu', 'AUR62038615' => 'cqu', 'AUR62041347' => 'cqu', 'BcaB01g04574' => 'bca', 'BcaB02g09263' => 'bca', 'BcaB02g10453' => 'bca', 'BcaB05g22513' => 'bca', 'BcaB08g36253' => 'bca', 'BcaB08g36254' => 'bca', 'BcaC01g06519' => 'bca', 'BcaC02g11889' => 'bca', 'BcaC03g14010' => 'bca', 'BcaC03g18439' => 'bca', 'BcaC04g19765' => 'bca', 'BcaC09g48432' => 'bca', 'BcaNung07302' => 'bca', 'BolC2t06040H' => 'bol', 'BolC2t07346H' => 'bol', 'BolC3t13817H' => 'bol', 'BolC4t22625H' => 'bol', 'BolC4t23297H' => 'bol', 'BolC8t51278H' => 'bol', 'BolC9t58050H' => 'bol', 'BolC9t58051H' => 'bol', 'BolC9t60163H' => 'bol', 'BraA02t04712Z' => 'bra', 'BraA02t05791Z' => 'bra', 'BraA03t10483Z' => 'bra', 'BraA05t19795Z' => 'bra', 'BraA05t20276Z' => 'bra', 'BraA09t40827Z' => 'bra', 'BraA10t43750Z' => 'bra', 'BraA10t43751Z' => 'bra', 'BraA10t45370Z' => 'bra', 'C02p00400' => 'bna', 'C02p12460' => 'bna', 'C03p13680' => 'bna', 'C04p10270' => 'bna', 'C04p17500' => 'bna', 'C08p37010' => 'bna', 'C09p51880' => 'bna', 'C09p51890' => 'bna', 'C09p74300' => 'bna', 'CAN.G179.26' => 'can', 'CAN.G3384.1' => 'can', 'CAN.G394.68' => 'can', 'CAN.G907.13' => 'can', 'CANSAT11G0012' => 'cansat', 'CANSAT25G1586' => 'cansat', 'CANSAT35G0735' => 'cansat', 'CANSAT54G0556' => 'cansat', 'CANSAT64G0356' => 'cansat', 'CANSAT78G2042' => 'cansat', 'CARHR125920' => 'chi', 'CARHR131910' => 'chi', 'CARHR172390' => 'chi', 'CARHR211140' => 'chi', 'CARHR285850' => 'chi', 'CARHR285860' => 'chi', 'Carub.0004s1347' => 'cru', 'Carub.0004s1960' => 'cru', 'Carub.0005s2880' => 'cru', 'Carub.0006s0107' => 'cru', 'Carub.0008s2015' => 'cru', 'Carub.0008s2016' => 'cru', 'Carub.0008s2017' => 'cru', 'Ca_01315_v3' => 'car', 'Ca_05063_v3' => 'car', 'Ca_10231_v3' => 'car', 'Ca_10913_v3' => 'car', 'Ca_19156_v3' => 'car', 'Ca_23644_v3' => 'car', 'Ca_26735_v3' => 'car', 'Cc01_g13130' => 'ccan', 'Cc02_g21690' => 'ccan', 'Cc03_g03600' => 'ccan', 'Cc06_g02510' => 'ccan', 'CDE02G1265' => 'cde', 'CDE05G0415' => 'cde', 'CDE08G1082' => 'cde', 'Cfa005780' => 'cfa', 'Cfa011522' => 'cfa', 'Cfa011523' => 'cfa', 'Cfa015627' => 'cfa', 'Cfa017359' => 'cfa', 'Ciclev10005687m.g' => 'ccl', 'Ciclev10012173m.g' => 'ccl', 'Ciclev10021621m.g' => 'ccl', 'Ciclev10028968m.g' => 'ccl', 'Ciclev10029907m.g' => 'ccl', 'CiPaw.01G164800' => 'cil', 'CiPaw.07G083700' => 'cil', 'CiPaw.07G127000' => 'cil', 'CiPaw.07G136900' => 'cil', 'CiPaw.08G081700' => 'cil', 'CiPaw.09G194600' => 'cil', 'CiPaw.10G146500' => 'cil', 'CiPaw.13G091500' => 'cil', 'CiPaw.13G091600' => 'cil', 'ClCG00G003390' => 'cla', 'ClCG01G007220' => 'cla', 'ClCG03G001370' => 'cla', 'ClCG04G008100' => 'cla', 'ClCG06G006110' => 'cla', 'ClCG06G006130' => 'cla', 'ClCG10G021210' => 'cla', 'COL.COLO4_07648' => 'col', 'COL.COLO4_07650' => 'col', 'COL.COLO4_07651' => 'col', 'COL.COLO4_14780' => 'col', 'COL.COLO4_18546' => 'col', 'COL.COLO4_18547' => 'col', 'COL.COLO4_23103' => 'col', 'COL.COLO4_30419' => 'col', 'COL.COLO4_34232' => 'col', 'Cpa.g.sc169.20' => 'cpa', 'Cpa.g.sc57.45' => 'cpa', 'Cpa.g.sc58.124' => 'cpa', 'Cpa.g.sc58.125' => 'cpa', 'Cpa.g.sc81.118' => 'cpa', 'Cpa.g.sc81.119' => 'cpa', 'Cre12.g524700' => 'cre', 'CsaV3_1G034430' => 'csa', 'CsaV3_1G034440' => 'csa', 'CsaV3_1G034450' => 'csa', 'CsaV3_3G034830' => 'csa', 'CsaV3_4G025090' => 'csa', 'CsaV3_5G018660' => 'csa', 'CsaV3_6G038160' => 'csa', 'CSS0003447' => 'camsi', 'CSS0017840' => 'camsi', 'CSS0019260' => 'camsi', 'CSS0040375' => 'camsi', 'CSS0042533' => 'camsi', 'DCAR_005960' => 'dca', 'DCAR_012104' => 'dca', 'DCAR_012105' => 'dca', 'DCAR_012293' => 'dca', 'DCAR_015632' => 'dca', 'DCAR_024602' => 'dca', 'DCAR_028752' => 'dca', 'Dinv06261' => 'din', 'Dinv13982' => 'din', 'Dinv17029' => 'din', 'Dinv18463' => 'din', 'Dinv33181' => 'din', 'Dinv35585' => 'din', 'Dinv37161' => 'din', 'Dinv42977' => 'din', 'Dinv43122' => 'din', 'Dinv44517' => 'din', 'Duzib093G0256' => 'dzi', 'Duzib106G1254' => 'dzi', 'Duzib128G1789' => 'dzi', 'Duzib133G0633' => 'dzi', 'Duzib138G0510' => 'dzi', 'Duzib150G1084' => 'dzi', 'Duzib168G0488' => 'dzi', 'Duzib168G1523' => 'dzi', 'Duzib170G0133' => 'dzi', 'ECA234G1433' => 'eca', 'ECA236G1432' => 'eca', 'ECA236G2256' => 'eca', 'ECA236G2365' => 'eca', 'ECA236G4830' => 'eca', 'ECA248G1505' => 'eca', 'EL10Ac3g06431' => 'bvu', 'EL10Ac5g12577' => 'bvu', 'EL10Ac6g13533' => 'bvu', 'EL10Ac7g16045' => 'bvu', 'Eucgr.A01281' => 'egr', 'Eucgr.B02326' => 'egr', 'Eucgr.H03532' => 'egr', 'Eucgr.K00553' => 'egr', 'Eucgr.K03116' => 'egr', 'FAN02G3963' => 'fan', 'FAN05G0438' => 'fan', 'FAN09G2434' => 'fan', 'FAN12G3984' => 'fan', 'FAN14G0798' => 'fan', 'FAN17G0652' => 'fan', 'FAN19G1988' => 'fan', 'FAN22G0632' => 'fan', 'FAN23G0387' => 'fan', 'FAN26G1323' => 'fan', 'FAN28G0666' => 'fan', 'FvH4_1g26080' => 'fve', 'FvH4_3g36780' => 'fve', 'FvH4_4g15270' => 'fve', 'FvH4_6g13490' => 'fve', 'Glyma.01G098700' => 'gma', 'Glyma.03G065900' => 'gma', 'Glyma.03G073754' => 'gma', 'Glyma.03G073758' => 'gma', 'Glyma.03G083200' => 'gma', 'Glyma.03G225500' => 'gma', 'Glyma.05G037766' => 'gma', 'Glyma.07G133500' => 'gma', 'Glyma.10G139400' => 'gma', 'Glyma.10G248900' => 'gma', 'Glyma.11G137800' => 'gma', 'Glyma.12G061300' => 'gma', 'Glyma.13G337900' => 'gma', 'Glyma.15G036600' => 'gma', 'Glyma.18G182800' => 'gma', 'Glyma.19G222500' => 'gma', 'Glyma.20G144800' => 'gma', 'Gohir.A01G222000' => 'ghi', 'Gohir.A03G044000' => 'ghi', 'Gohir.A03G044100' => 'ghi', 'Gohir.A04G083100' => 'ghi', 'Gohir.A07G127200' => 'ghi', 'Gohir.A07G132400' => 'ghi', 'Gohir.A08G000700' => 'ghi', 'Gohir.A11G327300' => 'ghi', 'Gohir.D01G211500' => 'ghi', 'Gohir.D03G123400' => 'ghi', 'Gohir.D03G123500' => 'ghi', 'Gohir.D04G121800' => 'ghi', 'Gohir.D07G131500' => 'ghi', 'Gohir.D07G136600' => 'ghi', 'Gohir.D08G011600' => 'ghi', 'Gohir.D11G346200' => 'ghi', 'Gorai.001G142800' => 'gra', 'Gorai.001G148700' => 'gra', 'Gorai.002G257300' => 'gra', 'Gorai.003G130000' => 'gra', 'Gorai.003G130100' => 'gra', 'Gorai.004G005300' => 'gra', 'Gorai.007G376500' => 'gra', 'Gorai.012G104700' => 'gra', 'GSVIVG01017946001' => 'vvi', 'GSVIVG01024928001' => 'vvi', 'GSVIVG01028227001' => 'vvi', 'GSVIVG01034151001' => 'vvi', 'HanXRQChr05g0135031' => 'han', 'HanXRQChr05g0135041' => 'han', 'HanXRQChr05g0140021' => 'han', 'HanXRQChr06g0178981' => 'han', 'HanXRQChr07g0188251' => 'han', 'HanXRQChr08g0235311' => 'han', 'HanXRQChr09g0271011' => 'han', 'HanXRQChr10g0293321' => 'han', 'HanXRQChr13g0388171' => 'han', 'Haze_00916' => 'cav', 'Haze_05063' => 'cav', 'Haze_20814' => 'cav', 'Haze_24128' => 'cav', 'Hma1.2p1_0745F.1_g212010' => 'hma', 'Hma1.2p1_0757F.1_g213260' => 'hma', 'Hma1.2p1_0936F.1_g238840' => 'hma', 'Hma1.2p1_1735F.1_g299890' => 'hma', 'Hma1.2p1_1861F.1_g305685' => 'hma', 'HPP92_003397' => 'vpl', 'HPP92_012597' => 'vpl', 'HPP92_015520' => 'vpl', 'HPP92_015539' => 'vpl', 'HPP92_020373' => 'vpl', 'Hund04938' => 'sun', 'Hund10677' => 'sun', 'Hund11033' => 'sun', 'Hund12155' => 'sun', 'Lalb_Chr01g0022551' => 'lal', 'Lalb_Chr03g0042341' => 'lal', 'Lalb_Chr07g0192931' => 'lal', 'Lalb_Chr12g0209551' => 'lal', 'Lalb_Chr19g0125251' => 'lal', 'Lalb_Chr19g0137891' => 'lal', 'Lalb_Chr21g0304641' => 'lal', 'Lalb_Chr21g0309881' => 'lal', 'Lj1A5T12' => 'lonja', 'Lj1C148G10' => 'lonja', 'Lj2A93T83' => 'lonja', 'Lj3A738G68' => 'lonja', 'Lj3C966T1' => 'lonja', 'Lj3g0018958' => 'lja', 'Lj3g0021831' => 'lja', 'Lj3g0025443' => 'lja', 'Lj4g0026809' => 'lja', 'Lj5g0012558' => 'lja', 'Lj5g0021586' => 'lja', 'Lsat_1_v5_gn_5_156840' => 'lsa', 'Lsat_1_v5_gn_8_73460' => 'lsa', 'Lsat_1_v5_gn_8_73481' => 'lsa', 'Lsat_1_v5_gn_9_31601' => 'lsa', 'Lsat_1_v5_gn_9_77320' => 'lsa', 'Manes.01G171300' => 'mes', 'Manes.01G171400' => 'mes', 'Manes.01G236100' => 'mes', 'Manes.02G130500' => 'mes', 'Manes.02G130600' => 'mes', 'Manes.03G180200' => 'mes', 'Manes.05G007000' => 'mes', 'Manes.08G084400' => 'mes', 'Manes.09G092600' => 'mes', 'Manes.15G027900' => 'mes', 'MBI04_g40948_MAGBIO' => 'mbi', 'MBI14_g12123_MAGBIO' => 'mbi', 'MBI18_g28915_MAGBIO' => 'mbi', 'MCO09G053' => 'mco', 'MCO11G782' => 'mco', 'MCO15G215' => 'mco', 'MD03G1088500' => 'mdo', 'MD03G1088600' => 'mdo', 'MD04G1130800' => 'mdo', 'MD09G1291700' => 'mdo', 'MD11G1097500' => 'mdo', 'MD11G1097600' => 'mdo', 'MD12G1143900' => 'mdo', 'MD13G1191400' => 'mdo', 'MD16G1191500' => 'mdo', 'Medtr1g085570' => 'mtr', 'Medtr1g104610' => 'mtr', 'Medtr2g097520' => 'mtr', 'Medtr4g021800' => 'mtr', 'Medtr4g021825' => 'mtr', 'Medtr4g064270' => 'mtr', 'Medtr4g064380' => 'mtr', 'Medtr7g062150' => 'mtr', 'MELO3C003138.2' => 'cme', 'MELO3C005187.2' => 'cme', 'MELO3C009252.2' => 'cme', 'MELO3C014481.2' => 'cme', 'MELO3C020616.2' => 'cme', 'MELO3C020617.2' => 'cme', 'MELO3C020618.2' => 'cme', 'Migut.G00328' => 'egut', 'Migut.J00320' => 'egut', 'Migut.L01000' => 'egut', 'Migut.L01953' => 'egut', 'MSTRG.10253' => 'ama', 'MSTRG.19077' => 'ama', 'MSTRG.26780' => 'ama', 'MSTRG.4023' => 'ama', 'MSTRG.5655' => 'ama', 'MSTRG.9992' => 'ama', 'Nitab4.5_0000043g0310' => 'nta', 'Nitab4.5_0000463g0080' => 'nta', 'Nitab4.5_0000705g0170' => 'nta', 'Nitab4.5_0001326g0060' => 'nta', 'Nitab4.5_0001628g0030' => 'nta', 'Nitab4.5_0002103g0110' => 'nta', 'Nitab4.5_0002946g0030' => 'nta', 'Nitab4.5_0004639g0030' => 'nta', 'Nn2g11149' => 'nnu', 'Nn2g13389' => 'nnu', 'Nn4g25326' => 'nnu', 'Nn4g26290' => 'nnu', 'Nn5g29865' => 'nnu', 'Oeu004163.1' => 'oeu', 'Oeu006901.1' => 'oeu', 'Oeu010096.1' => 'oeu', 'Oeu024340.1' => 'oeu', 'Oeu048369.1' => 'oeu', 'Os01g0973000' => 'osa', 'Os03g0273800' => 'osa', 'Os03g0701200' => 'osa', 'Os03g0834050' => 'osa', 'Os07g0634400' => 'osa', 'Peaxi162Scf00092g01414' => 'pax', 'Peaxi162Scf00165g00818' => 'pax', 'Peaxi162Scf00309g00516' => 'pax', 'Peaxi162Scf00774g00218' => 'pax', 'PGR004G1824' => 'pgr', 'PGR004G2606' => 'pgr', 'PGR031G2716' => 'pgr', 'PGR102G2460' => 'pgr', 'PGR142G2599' => 'pgr', 'PGSC0003DMG400000843' => 'stu', 'PGSC0003DMG400008829' => 'stu', 'PGSC0003DMG400030418' => 'stu', 'PGSC0003DMG400031834' => 'stu', 'PGSC0003DMG401028300' => 'stu', 'PGSC0003DMG402028300' => 'stu', 'Phvul.001G219300' => 'pvu', 'Phvul.007G056000' => 'pvu', 'Phvul.007G208000' => 'pvu', 'Phvul.008G119500' => 'pvu', 'Phvul.010G011200' => 'pvu', 'Phvul.010G014800' => 'pvu', 'Phvul.011G062900' => 'pvu', 'Phvul.L007043' => 'pvu', 'Potri.001G242300' => 'ptr', 'Potri.002G185300' => 'ptr', 'Potri.006G086900' => 'ptr', 'Potri.008G151700' => 'ptr', 'Potri.009G033500' => 'ptr', 'Potri.010G089300' => 'ptr', 'Potri.014G110800' => 'ptr', 'Pp3c27_8130' => 'ppa', 'Pp3c6_27410' => 'ppa', 'PRCOL_00001659' => 'pco', 'PRCOL_00001927' => 'pco', 'PRCOL_00003649' => 'pco', 'Prupe.1G011600' => 'ppe', 'Prupe.3G000800' => 'ppe', 'Prupe.3G001100' => 'ppe', 'Prupe.6G072700' => 'ppe', 'Prupe.6G072800' => 'ppe', 'Prupe.6G257300' => 'ppe', 'Prupe.8G033000' => 'ppe', 'Psat0s2633g0080' => 'psa', 'Psat0s3396g0080' => 'psa', 'Psat0s3396g0200' => 'psa', 'Psat3g139080' => 'psa', 'Psat5g285080' => 'psa', 'Psat6g157760' => 'psa', 'Psat6g208440' => 'psa', 'Psat7g215320' => 'psa', 'Psat7g215400' => 'psa', 'Psat7g235600' => 'psa', 'Psat7g235760' => 'psa', 'PSO063G4603' => 'pso', 'PSO210G0182' => 'pso', 'PSO210G0196' => 'pso', 'PSO339G0394' => 'pso', 'PSO339G4127' => 'pso', 'PSO513G0064' => 'pso', 'PSO761G0079' => 'pso', 'QL01p031003' => 'qlo', 'QL01p031078' => 'qlo', 'QL06p003004' => 'qlo', 'QL07p048731' => 'qlo', 'QL09p037427' => 'qlo', 'RcHm_v2.0_Chr3g0466361' => 'rch', 'RcHm_v2.0_Chr3g0485571' => 'rch', 'RcHm_v2.0_Chr4g0416551' => 'rch', 'RcHm_v2.0_Chr5g0065831' => 'rch', 'Rhsim01G0230500' => 'rsi', 'Rhsim05G0194000' => 'rsi', 'Rhsim08G0250400' => 'rsi', 'Sabra02G0131000' => 'sbr', 'Sabra06G0066300' => 'sbr', 'Sabra08G0115500' => 'sbr', 'Sabra09G0023900' => 'sbr', 'Sabra10G0054000' => 'sbr', 'Sabra14G0081500' => 'sbr', 'Sabra16G0147100' => 'sbr', 'SalBow2G2957' => 'sbo', 'SalBow4G3320' => 'sbo', 'SalBow8G1894' => 'sbo', 'Sc07g0007950' => 'sci', 'Sc12g0001360' => 'sci', 'Sc13g0004330' => 'sci', 'Sc20g0005010' => 'sci', 'Sed0000361' => 'sed', 'Sed0001706' => 'sed', 'Sed0002422' => 'sed', 'Sed0004029' => 'sed', 'Sed0004602' => 'sed', 'Sed0004943' => 'sed', 'Sed0008646' => 'sed', 'Sed0023313' => 'sed', 'Sed0024843' => 'sed', 'SEGI_00081' => 'sgi', 'SEGI_00947' => 'sgi', 'SEGI_04046' => 'sgi', 'SEGI_06880' => 'sgi', 'SEGI_09736' => 'sgi', 'SEGI_12741' => 'sgi', 'SEGI_14530' => 'sgi', 'SEGI_20705' => 'sgi', 'SEGI_26088' => 'sgi', 'SEGI_28323' => 'sgi', 'SEGI_33343' => 'sgi', 'SGA_v2.0_scaffold126G33775' => 'sas', 'SGA_v2.0_scaffold2G01337' => 'sas', 'SGA_v2.0_scaffold38G15006' => 'sas', 'SGA_v2.0_scaffold39G15264' => 'sas', 'SGA_v2.0_scaffold453G51880' => 'sas', 'SHI12696' => 'shi', 'SMO367G1096' => 'smo', 'Solyc01g068630.3' => 'sly', 'Solyc05g011880.3' => 'sly', 'Solyc06g076300.3' => 'sly', 'Solyc09g010940.4' => 'sly', 'Solyc09g075890.3' => 'sly', 'Sopen01g030560' => 'spe', 'Sopen05g006630' => 'spe', 'Sopen06g032720' => 'spe', 'Sopen09g005660' => 'spe', 'Sopen09g030690' => 'spe', 'Sp4g14540' => 'spa', 'Sp4g20030' => 'spa', 'Sp5g01320' => 'spa', 'Sp6g21170' => 'spa', 'Sp6g21180' => 'spa', 'Sp6g21190' => 'spa', 'Sp6g40220' => 'spa', 'TAR362G0122' => 'tar', 'TAR362G1338' => 'tar', 'TAR369G0590' => 'tar', 'TAR371G0824' => 'tar', 'TAR622G1429' => 'tar', 'TAR623G0734' => 'tar', 'TAR625G0441' => 'tar', 'TAR629G0976' => 'tar', 'TAR633G1195' => 'tar', 'TAR636G2660' => 'tar', 'THA.LOC104799440' => 'tha', 'THA.LOC104800966' => 'tha', 'THA.LOC104806559' => 'tha', 'THA.LOC104810765' => 'tha', 'THA.LOC104816266' => 'tha', 'THA.LOC104817419' => 'tha', 'THA.LOC104827021' => 'tha', 'Thecc.01G327400' => 'tca', 'Thecc.04G229200' => 'tca', 'Thecc.05G037400' => 'tca', 'Thecc.09G318600' => 'tca', 'Thecc.09G318700' => 'tca', 'Thhalv10006238m.g' => 'esa', 'Thhalv10014321m.g' => 'esa', 'Thhalv10014335m.g' => 'esa', 'Thhalv10015826m.g' => 'esa', 'Thhalv10017107m.g' => 'esa', 'Thhalv10017180m.g' => 'esa', 'Thhalv10029339m.g' => 'esa', 'TPR.G1699' => 'tpr', 'TPR.G23609' => 'tpr', 'TPR.G3081' => 'tpr', 'TPR.G40397' => 'tpr', 'TPR.G5522' => 'tpr', 'TPR.G5618' => 'tpr', 'TPR.G5626' => 'tpr', 'TWI09G1632' => 'twi', 'TWI23G1230' => 'twi', 'TWI53G1064' => 'twi', 'TWI59G0751' => 'twi', 'TWI74G0947' => 'twi', 'TWI77G0337' => 'twi', 'TWI79G1254' => 'twi', 'unitig_0.g2341' => 'ugi', 'unitig_26.g10006' => 'ugi', 'unitig_26.g10008' => 'ugi', 'unitig_26.g9192' => 'ugi', 'vmacro14547' => 'vma', 'vmacro15333' => 'vma', 'vmacro18743' => 'vma', 'vmacro20166' => 'vma', 'VMungo0331G0523' => 'vmu', 'VMungo0331G1202' => 'vmu', 'VMungo0720G1228' => 'vmu', 'VMungo0720G1514' => 'vmu', 'VMungo1080G0169' => 'vmu', 'VMungo1127G1475' => 'vmu', 'VMungo1383G1208' => 'vmu', 'VMungo1383G1698' => 'vmu', 'Zm00001eb012270' => 'zma', 'Zm00001eb054100' => 'zma', 'Zm00001eb063350' => 'zma', 'Zm00001eb328560' => 'zma', 'Zm00001eb342820' => 'zma', 'Zm00001eb362210' => 'zma', 'Zm00001eb397730' => 'zma', 'Zm00001eb399750' => 'zma' ) $gf_id = 'HOM05D000959' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000959' ) $data_identifier = 'HOM05D000959' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 5, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 5, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 10, 'mbi' => (int) 3, 'mco' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 2, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 3, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 11, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399750' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000959', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '622', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p07100' => 'bna', 'A03p11720' => 'bna', 'A05p08300' => 'bna', 'A05p13380' => 'bna', 'A09p54130' => 'bna', 'A10p16690' => 'bna', 'A10p16700' => 'bna', 'A10p33390' => 'bna', 'Aa31LG10G16020' => 'aar', 'Aa31LG1G11810' => 'aar', 'Aa31LG1G11830' => 'aar', 'Aa31LG1G22510' => 'aar', 'Aa31LG5G4890' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5793' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2310' => 'aag', 'Actinidia08499' => 'ach', 'Actinidia11262' => 'ach', 'Actinidia23926' => 'ach', 'Actinidia34420' => 'ach', 'Actinidia36970' => 'ach', 'Ah.02g111220' => 'amhyb', 'Ah.15g097750' => 'amhyb', 'AL4G27500' => 'aly', 'AL6G11470' => 'aly', 'AL8G35950' => 'aly', 'AL8G35960' => 'aly', 'AL8G35970' => 'aly', 'Aqoxy1G00912' => 'aox', 'Aqoxy2G02253' => 'aox', 'Aqoxy2G02411' => 'aox', 'Aqoxy5G00485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BZ66YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K8ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM4FUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6BF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HFV7XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25JBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0YNNV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MAKK6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P70IT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP2Z6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V61LZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YWP64R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3S9AI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7PGHH' => 'arhy', 'AT2G32150' => 'ath', 'AT3G62040' => 'ath', 'AT5G02230' => 'ath', 'AT5G59480' => 'ath', 'AT5G59490' => 'ath', 'ATR0332G060' => 'atr', 'ATR0559G190' => 'atr', 'ATR0693G294' => 'atr', 'Atru.chr3.3975' => 'acertr', 'Atru.chr3.3976' => 'acertr', 'Atru.chr3.3977' => 'acertr', 'Atru.chr4.2498' => 'acertr', 'Atru.chr5.838' => 'acertr', 'Atru.chr8.1990' => 'acertr', 'Atru.chr8.1991' => 'acertr', 'Atru.chr8.1992' => 'acertr', 'AUR62001759' => 'cqu', 'AUR62009545' => 'cqu', 'AUR62010474' => 'cqu', 'AUR62025820' => 'cqu', 'AUR62030422' => 'cqu', 'AUR62033605' => 'cqu', 'AUR62038615' => 'cqu', 'AUR62041347' => 'cqu', 'BcaB01g04574' => 'bca', 'BcaB02g09263' => 'bca', 'BcaB02g10453' => 'bca', 'BcaB05g22513' => 'bca', 'BcaB08g36253' => 'bca', 'BcaB08g36254' => 'bca', 'BcaC01g06519' => 'bca', 'BcaC02g11889' => 'bca', 'BcaC03g14010' => 'bca', 'BcaC03g18439' => 'bca', 'BcaC04g19765' => 'bca', 'BcaC09g48432' => 'bca', 'BcaNung07302' => 'bca', 'BolC2t06040H' => 'bol', 'BolC2t07346H' => 'bol', 'BolC3t13817H' => 'bol', 'BolC4t22625H' => 'bol', 'BolC4t23297H' => 'bol', 'BolC8t51278H' => 'bol', 'BolC9t58050H' => 'bol', 'BolC9t58051H' => 'bol', 'BolC9t60163H' => 'bol', 'BraA02t04712Z' => 'bra', 'BraA02t05791Z' => 'bra', 'BraA03t10483Z' => 'bra', 'BraA05t19795Z' => 'bra', 'BraA05t20276Z' => 'bra', 'BraA09t40827Z' => 'bra', 'BraA10t43750Z' => 'bra', 'BraA10t43751Z' => 'bra', 'BraA10t45370Z' => 'bra', 'C02p00400' => 'bna', 'C02p12460' => 'bna', 'C03p13680' => 'bna', 'C04p10270' => 'bna', 'C04p17500' => 'bna', 'C08p37010' => 'bna', 'C09p51880' => 'bna', 'C09p51890' => 'bna', 'C09p74300' => 'bna', 'CAN.G179.26' => 'can', 'CAN.G3384.1' => 'can', 'CAN.G394.68' => 'can', 'CAN.G907.13' => 'can', 'CANSAT11G0012' => 'cansat', 'CANSAT25G1586' => 'cansat', 'CANSAT35G0735' => 'cansat', 'CANSAT54G0556' => 'cansat', 'CANSAT64G0356' => 'cansat', 'CANSAT78G2042' => 'cansat', 'CARHR125920' => 'chi', 'CARHR131910' => 'chi', 'CARHR172390' => 'chi', 'CARHR211140' => 'chi', 'CARHR285850' => 'chi', 'CARHR285860' => 'chi', 'Carub.0004s1347' => 'cru', 'Carub.0004s1960' => 'cru', 'Carub.0005s2880' => 'cru', 'Carub.0006s0107' => 'cru', 'Carub.0008s2015' => 'cru', 'Carub.0008s2016' => 'cru', 'Carub.0008s2017' => 'cru', 'Ca_01315_v3' => 'car', 'Ca_05063_v3' => 'car', 'Ca_10231_v3' => 'car', 'Ca_10913_v3' => 'car', 'Ca_19156_v3' => 'car', 'Ca_23644_v3' => 'car', 'Ca_26735_v3' => 'car', 'Cc01_g13130' => 'ccan', 'Cc02_g21690' => 'ccan', 'Cc03_g03600' => 'ccan', 'Cc06_g02510' => 'ccan', 'CDE02G1265' => 'cde', 'CDE05G0415' => 'cde', 'CDE08G1082' => 'cde', 'Cfa005780' => 'cfa', 'Cfa011522' => 'cfa', 'Cfa011523' => 'cfa', 'Cfa015627' => 'cfa', 'Cfa017359' => 'cfa', 'Ciclev10005687m.g' => 'ccl', 'Ciclev10012173m.g' => 'ccl', 'Ciclev10021621m.g' => 'ccl', 'Ciclev10028968m.g' => 'ccl', 'Ciclev10029907m.g' => 'ccl', 'CiPaw.01G164800' => 'cil', 'CiPaw.07G083700' => 'cil', 'CiPaw.07G127000' => 'cil', 'CiPaw.07G136900' => 'cil', 'CiPaw.08G081700' => 'cil', 'CiPaw.09G194600' => 'cil', 'CiPaw.10G146500' => 'cil', 'CiPaw.13G091500' => 'cil', 'CiPaw.13G091600' => 'cil', 'ClCG00G003390' => 'cla', 'ClCG01G007220' => 'cla', 'ClCG03G001370' => 'cla', 'ClCG04G008100' => 'cla', 'ClCG06G006110' => 'cla', 'ClCG06G006130' => 'cla', 'ClCG10G021210' => 'cla', 'COL.COLO4_07648' => 'col', 'COL.COLO4_07650' => 'col', 'COL.COLO4_07651' => 'col', 'COL.COLO4_14780' => 'col', 'COL.COLO4_18546' => 'col', 'COL.COLO4_18547' => 'col', 'COL.COLO4_23103' => 'col', 'COL.COLO4_30419' => 'col', 'COL.COLO4_34232' => 'col', 'Cpa.g.sc169.20' => 'cpa', 'Cpa.g.sc57.45' => 'cpa', 'Cpa.g.sc58.124' => 'cpa', 'Cpa.g.sc58.125' => 'cpa', 'Cpa.g.sc81.118' => 'cpa', 'Cpa.g.sc81.119' => 'cpa', 'Cre12.g524700' => 'cre', 'CsaV3_1G034430' => 'csa', 'CsaV3_1G034440' => 'csa', 'CsaV3_1G034450' => 'csa', 'CsaV3_3G034830' => 'csa', 'CsaV3_4G025090' => 'csa', 'CsaV3_5G018660' => 'csa', 'CsaV3_6G038160' => 'csa', 'CSS0003447' => 'camsi', 'CSS0017840' => 'camsi', 'CSS0019260' => 'camsi', 'CSS0040375' => 'camsi', 'CSS0042533' => 'camsi', 'DCAR_005960' => 'dca', 'DCAR_012104' => 'dca', 'DCAR_012105' => 'dca', 'DCAR_012293' => 'dca', 'DCAR_015632' => 'dca', 'DCAR_024602' => 'dca', 'DCAR_028752' => 'dca', 'Dinv06261' => 'din', 'Dinv13982' => 'din', 'Dinv17029' => 'din', 'Dinv18463' => 'din', 'Dinv33181' => 'din', 'Dinv35585' => 'din', 'Dinv37161' => 'din', 'Dinv42977' => 'din', 'Dinv43122' => 'din', 'Dinv44517' => 'din', 'Duzib093G0256' => 'dzi', 'Duzib106G1254' => 'dzi', 'Duzib128G1789' => 'dzi', 'Duzib133G0633' => 'dzi', 'Duzib138G0510' => 'dzi', 'Duzib150G1084' => 'dzi', 'Duzib168G0488' => 'dzi', 'Duzib168G1523' => 'dzi', 'Duzib170G0133' => 'dzi', 'ECA234G1433' => 'eca', 'ECA236G1432' => 'eca', 'ECA236G2256' => 'eca', 'ECA236G2365' => 'eca', 'ECA236G4830' => 'eca', 'ECA248G1505' => 'eca', 'EL10Ac3g06431' => 'bvu', 'EL10Ac5g12577' => 'bvu', 'EL10Ac6g13533' => 'bvu', 'EL10Ac7g16045' => 'bvu', 'Eucgr.A01281' => 'egr', 'Eucgr.B02326' => 'egr', 'Eucgr.H03532' => 'egr', 'Eucgr.K00553' => 'egr', 'Eucgr.K03116' => 'egr', 'FAN02G3963' => 'fan', 'FAN05G0438' => 'fan', 'FAN09G2434' => 'fan', 'FAN12G3984' => 'fan', 'FAN14G0798' => 'fan', 'FAN17G0652' => 'fan', 'FAN19G1988' => 'fan', 'FAN22G0632' => 'fan', 'FAN23G0387' => 'fan', 'FAN26G1323' => 'fan', 'FAN28G0666' => 'fan', 'FvH4_1g26080' => 'fve', 'FvH4_3g36780' => 'fve', 'FvH4_4g15270' => 'fve', 'FvH4_6g13490' => 'fve', 'Glyma.01G098700' => 'gma', 'Glyma.03G065900' => 'gma', 'Glyma.03G073754' => 'gma', 'Glyma.03G073758' => 'gma', 'Glyma.03G083200' => 'gma', 'Glyma.03G225500' => 'gma', 'Glyma.05G037766' => 'gma', 'Glyma.07G133500' => 'gma', 'Glyma.10G139400' => 'gma', 'Glyma.10G248900' => 'gma', 'Glyma.11G137800' => 'gma', 'Glyma.12G061300' => 'gma', 'Glyma.13G337900' => 'gma', 'Glyma.15G036600' => 'gma', 'Glyma.18G182800' => 'gma', 'Glyma.19G222500' => 'gma', 'Glyma.20G144800' => 'gma', 'Gohir.A01G222000' => 'ghi', 'Gohir.A03G044000' => 'ghi', 'Gohir.A03G044100' => 'ghi', 'Gohir.A04G083100' => 'ghi', 'Gohir.A07G127200' => 'ghi', 'Gohir.A07G132400' => 'ghi', 'Gohir.A08G000700' => 'ghi', 'Gohir.A11G327300' => 'ghi', 'Gohir.D01G211500' => 'ghi', 'Gohir.D03G123400' => 'ghi', 'Gohir.D03G123500' => 'ghi', 'Gohir.D04G121800' => 'ghi', 'Gohir.D07G131500' => 'ghi', 'Gohir.D07G136600' => 'ghi', 'Gohir.D08G011600' => 'ghi', 'Gohir.D11G346200' => 'ghi', 'Gorai.001G142800' => 'gra', 'Gorai.001G148700' => 'gra', 'Gorai.002G257300' => 'gra', 'Gorai.003G130000' => 'gra', 'Gorai.003G130100' => 'gra', 'Gorai.004G005300' => 'gra', 'Gorai.007G376500' => 'gra', 'Gorai.012G104700' => 'gra', 'GSVIVG01017946001' => 'vvi', 'GSVIVG01024928001' => 'vvi', 'GSVIVG01028227001' => 'vvi', 'GSVIVG01034151001' => 'vvi', 'HanXRQChr05g0135031' => 'han', 'HanXRQChr05g0135041' => 'han', 'HanXRQChr05g0140021' => 'han', 'HanXRQChr06g0178981' => 'han', 'HanXRQChr07g0188251' => 'han', 'HanXRQChr08g0235311' => 'han', 'HanXRQChr09g0271011' => 'han', 'HanXRQChr10g0293321' => 'han', 'HanXRQChr13g0388171' => 'han', 'Haze_00916' => 'cav', 'Haze_05063' => 'cav', 'Haze_20814' => 'cav', 'Haze_24128' => 'cav', 'Hma1.2p1_0745F.1_g212010' => 'hma', 'Hma1.2p1_0757F.1_g213260' => 'hma', 'Hma1.2p1_0936F.1_g238840' => 'hma', 'Hma1.2p1_1735F.1_g299890' => 'hma', 'Hma1.2p1_1861F.1_g305685' => 'hma', 'HPP92_003397' => 'vpl', 'HPP92_012597' => 'vpl', 'HPP92_015520' => 'vpl', 'HPP92_015539' => 'vpl', 'HPP92_020373' => 'vpl', 'Hund04938' => 'sun', 'Hund10677' => 'sun', 'Hund11033' => 'sun', 'Hund12155' => 'sun', 'Lalb_Chr01g0022551' => 'lal', 'Lalb_Chr03g0042341' => 'lal', 'Lalb_Chr07g0192931' => 'lal', 'Lalb_Chr12g0209551' => 'lal', 'Lalb_Chr19g0125251' => 'lal', 'Lalb_Chr19g0137891' => 'lal', 'Lalb_Chr21g0304641' => 'lal', 'Lalb_Chr21g0309881' => 'lal', 'Lj1A5T12' => 'lonja', 'Lj1C148G10' => 'lonja', 'Lj2A93T83' => 'lonja', 'Lj3A738G68' => 'lonja', 'Lj3C966T1' => 'lonja', 'Lj3g0018958' => 'lja', 'Lj3g0021831' => 'lja', 'Lj3g0025443' => 'lja', 'Lj4g0026809' => 'lja', 'Lj5g0012558' => 'lja', 'Lj5g0021586' => 'lja', 'Lsat_1_v5_gn_5_156840' => 'lsa', 'Lsat_1_v5_gn_8_73460' => 'lsa', 'Lsat_1_v5_gn_8_73481' => 'lsa', 'Lsat_1_v5_gn_9_31601' => 'lsa', 'Lsat_1_v5_gn_9_77320' => 'lsa', 'Manes.01G171300' => 'mes', 'Manes.01G171400' => 'mes', 'Manes.01G236100' => 'mes', 'Manes.02G130500' => 'mes', 'Manes.02G130600' => 'mes', 'Manes.03G180200' => 'mes', 'Manes.05G007000' => 'mes', 'Manes.08G084400' => 'mes', 'Manes.09G092600' => 'mes', 'Manes.15G027900' => 'mes', 'MBI04_g40948_MAGBIO' => 'mbi', 'MBI14_g12123_MAGBIO' => 'mbi', 'MBI18_g28915_MAGBIO' => 'mbi', 'MCO09G053' => 'mco', 'MCO11G782' => 'mco', 'MCO15G215' => 'mco', 'MD03G1088500' => 'mdo', 'MD03G1088600' => 'mdo', 'MD04G1130800' => 'mdo', 'MD09G1291700' => 'mdo', 'MD11G1097500' => 'mdo', 'MD11G1097600' => 'mdo', 'MD12G1143900' => 'mdo', 'MD13G1191400' => 'mdo', 'MD16G1191500' => 'mdo', 'Medtr1g085570' => 'mtr', 'Medtr1g104610' => 'mtr', 'Medtr2g097520' => 'mtr', 'Medtr4g021800' => 'mtr', 'Medtr4g021825' => 'mtr', 'Medtr4g064270' => 'mtr', 'Medtr4g064380' => 'mtr', 'Medtr7g062150' => 'mtr', 'MELO3C003138.2' => 'cme', 'MELO3C005187.2' => 'cme', 'MELO3C009252.2' => 'cme', 'MELO3C014481.2' => 'cme', 'MELO3C020616.2' => 'cme', 'MELO3C020617.2' => 'cme', 'MELO3C020618.2' => 'cme', 'Migut.G00328' => 'egut', 'Migut.J00320' => 'egut', 'Migut.L01000' => 'egut', 'Migut.L01953' => 'egut', 'MSTRG.10253' => 'ama', 'MSTRG.19077' => 'ama', 'MSTRG.26780' => 'ama', 'MSTRG.4023' => 'ama', 'MSTRG.5655' => 'ama', 'MSTRG.9992' => 'ama', 'Nitab4.5_0000043g0310' => 'nta', 'Nitab4.5_0000463g0080' => 'nta', 'Nitab4.5_0000705g0170' => 'nta', 'Nitab4.5_0001326g0060' => 'nta', 'Nitab4.5_0001628g0030' => 'nta', 'Nitab4.5_0002103g0110' => 'nta', 'Nitab4.5_0002946g0030' => 'nta', 'Nitab4.5_0004639g0030' => 'nta', 'Nn2g11149' => 'nnu', 'Nn2g13389' => 'nnu', 'Nn4g25326' => 'nnu', 'Nn4g26290' => 'nnu', 'Nn5g29865' => 'nnu', 'Oeu004163.1' => 'oeu', 'Oeu006901.1' => 'oeu', 'Oeu010096.1' => 'oeu', 'Oeu024340.1' => 'oeu', 'Oeu048369.1' => 'oeu', 'Os01g0973000' => 'osa', 'Os03g0273800' => 'osa', 'Os03g0701200' => 'osa', 'Os03g0834050' => 'osa', 'Os07g0634400' => 'osa', 'Peaxi162Scf00092g01414' => 'pax', 'Peaxi162Scf00165g00818' => 'pax', 'Peaxi162Scf00309g00516' => 'pax', 'Peaxi162Scf00774g00218' => 'pax', 'PGR004G1824' => 'pgr', 'PGR004G2606' => 'pgr', 'PGR031G2716' => 'pgr', 'PGR102G2460' => 'pgr', 'PGR142G2599' => 'pgr', 'PGSC0003DMG400000843' => 'stu', 'PGSC0003DMG400008829' => 'stu', 'PGSC0003DMG400030418' => 'stu', 'PGSC0003DMG400031834' => 'stu', 'PGSC0003DMG401028300' => 'stu', 'PGSC0003DMG402028300' => 'stu', 'Phvul.001G219300' => 'pvu', 'Phvul.007G056000' => 'pvu', 'Phvul.007G208000' => 'pvu', 'Phvul.008G119500' => 'pvu', 'Phvul.010G011200' => 'pvu', 'Phvul.010G014800' => 'pvu', 'Phvul.011G062900' => 'pvu', 'Phvul.L007043' => 'pvu', 'Potri.001G242300' => 'ptr', 'Potri.002G185300' => 'ptr', 'Potri.006G086900' => 'ptr', 'Potri.008G151700' => 'ptr', 'Potri.009G033500' => 'ptr', 'Potri.010G089300' => 'ptr', 'Potri.014G110800' => 'ptr', 'Pp3c27_8130' => 'ppa', 'Pp3c6_27410' => 'ppa', 'PRCOL_00001659' => 'pco', 'PRCOL_00001927' => 'pco', 'PRCOL_00003649' => 'pco', 'Prupe.1G011600' => 'ppe', 'Prupe.3G000800' => 'ppe', 'Prupe.3G001100' => 'ppe', 'Prupe.6G072700' => 'ppe', 'Prupe.6G072800' => 'ppe', 'Prupe.6G257300' => 'ppe', 'Prupe.8G033000' => 'ppe', 'Psat0s2633g0080' => 'psa', 'Psat0s3396g0080' => 'psa', 'Psat0s3396g0200' => 'psa', 'Psat3g139080' => 'psa', 'Psat5g285080' => 'psa', 'Psat6g157760' => 'psa', 'Psat6g208440' => 'psa', 'Psat7g215320' => 'psa', 'Psat7g215400' => 'psa', 'Psat7g235600' => 'psa', 'Psat7g235760' => 'psa', 'PSO063G4603' => 'pso', 'PSO210G0182' => 'pso', 'PSO210G0196' => 'pso', 'PSO339G0394' => 'pso', 'PSO339G4127' => 'pso', 'PSO513G0064' => 'pso', 'PSO761G0079' => 'pso', 'QL01p031003' => 'qlo', 'QL01p031078' => 'qlo', 'QL06p003004' => 'qlo', 'QL07p048731' => 'qlo', 'QL09p037427' => 'qlo', 'RcHm_v2.0_Chr3g0466361' => 'rch', 'RcHm_v2.0_Chr3g0485571' => 'rch', 'RcHm_v2.0_Chr4g0416551' => 'rch', 'RcHm_v2.0_Chr5g0065831' => 'rch', 'Rhsim01G0230500' => 'rsi', 'Rhsim05G0194000' => 'rsi', 'Rhsim08G0250400' => 'rsi', 'Sabra02G0131000' => 'sbr', 'Sabra06G0066300' => 'sbr', 'Sabra08G0115500' => 'sbr', 'Sabra09G0023900' => 'sbr', 'Sabra10G0054000' => 'sbr', 'Sabra14G0081500' => 'sbr', 'Sabra16G0147100' => 'sbr', 'SalBow2G2957' => 'sbo', 'SalBow4G3320' => 'sbo', 'SalBow8G1894' => 'sbo', 'Sc07g0007950' => 'sci', 'Sc12g0001360' => 'sci', 'Sc13g0004330' => 'sci', 'Sc20g0005010' => 'sci', 'Sed0000361' => 'sed', 'Sed0001706' => 'sed', 'Sed0002422' => 'sed', 'Sed0004029' => 'sed', 'Sed0004602' => 'sed', 'Sed0004943' => 'sed', 'Sed0008646' => 'sed', 'Sed0023313' => 'sed', 'Sed0024843' => 'sed', 'SEGI_00081' => 'sgi', 'SEGI_00947' => 'sgi', 'SEGI_04046' => 'sgi', 'SEGI_06880' => 'sgi', 'SEGI_09736' => 'sgi', 'SEGI_12741' => 'sgi', 'SEGI_14530' => 'sgi', 'SEGI_20705' => 'sgi', 'SEGI_26088' => 'sgi', 'SEGI_28323' => 'sgi', 'SEGI_33343' => 'sgi', 'SGA_v2.0_scaffold126G33775' => 'sas', 'SGA_v2.0_scaffold2G01337' => 'sas', 'SGA_v2.0_scaffold38G15006' => 'sas', 'SGA_v2.0_scaffold39G15264' => 'sas', 'SGA_v2.0_scaffold453G51880' => 'sas', 'SHI12696' => 'shi', 'SMO367G1096' => 'smo', 'Solyc01g068630.3' => 'sly', 'Solyc05g011880.3' => 'sly', 'Solyc06g076300.3' => 'sly', 'Solyc09g010940.4' => 'sly', 'Solyc09g075890.3' => 'sly', 'Sopen01g030560' => 'spe', 'Sopen05g006630' => 'spe', 'Sopen06g032720' => 'spe', 'Sopen09g005660' => 'spe', 'Sopen09g030690' => 'spe', 'Sp4g14540' => 'spa', 'Sp4g20030' => 'spa', 'Sp5g01320' => 'spa', 'Sp6g21170' => 'spa', 'Sp6g21180' => 'spa', 'Sp6g21190' => 'spa', 'Sp6g40220' => 'spa', 'TAR362G0122' => 'tar', 'TAR362G1338' => 'tar', 'TAR369G0590' => 'tar', 'TAR371G0824' => 'tar', 'TAR622G1429' => 'tar', 'TAR623G0734' => 'tar', 'TAR625G0441' => 'tar', 'TAR629G0976' => 'tar', 'TAR633G1195' => 'tar', 'TAR636G2660' => 'tar', 'THA.LOC104799440' => 'tha', 'THA.LOC104800966' => 'tha', 'THA.LOC104806559' => 'tha', 'THA.LOC104810765' => 'tha', 'THA.LOC104816266' => 'tha', 'THA.LOC104817419' => 'tha', 'THA.LOC104827021' => 'tha', 'Thecc.01G327400' => 'tca', 'Thecc.04G229200' => 'tca', 'Thecc.05G037400' => 'tca', 'Thecc.09G318600' => 'tca', 'Thecc.09G318700' => 'tca', 'Thhalv10006238m.g' => 'esa', 'Thhalv10014321m.g' => 'esa', 'Thhalv10014335m.g' => 'esa', 'Thhalv10015826m.g' => 'esa', 'Thhalv10017107m.g' => 'esa', 'Thhalv10017180m.g' => 'esa', 'Thhalv10029339m.g' => 'esa', 'TPR.G1699' => 'tpr', 'TPR.G23609' => 'tpr', 'TPR.G3081' => 'tpr', 'TPR.G40397' => 'tpr', 'TPR.G5522' => 'tpr', 'TPR.G5618' => 'tpr', 'TPR.G5626' => 'tpr', 'TWI09G1632' => 'twi', 'TWI23G1230' => 'twi', 'TWI53G1064' => 'twi', 'TWI59G0751' => 'twi', 'TWI74G0947' => 'twi', 'TWI77G0337' => 'twi', 'TWI79G1254' => 'twi', 'unitig_0.g2341' => 'ugi', 'unitig_26.g10006' => 'ugi', 'unitig_26.g10008' => 'ugi', 'unitig_26.g9192' => 'ugi', 'vmacro14547' => 'vma', 'vmacro15333' => 'vma', 'vmacro18743' => 'vma', 'vmacro20166' => 'vma', 'VMungo0331G0523' => 'vmu', 'VMungo0331G1202' => 'vmu', 'VMungo0720G1228' => 'vmu', 'VMungo0720G1514' => 'vmu', 'VMungo1080G0169' => 'vmu', 'VMungo1127G1475' => 'vmu', 'VMungo1383G1208' => 'vmu', 'VMungo1383G1698' => 'vmu', 'Zm00001eb012270' => 'zma', 'Zm00001eb054100' => 'zma', 'Zm00001eb063350' => 'zma', 'Zm00001eb328560' => 'zma', 'Zm00001eb342820' => 'zma', 'Zm00001eb362210' => 'zma', 'Zm00001eb397730' => 'zma', 'Zm00001eb399750' => 'zma' ), 'gf_id' => 'HOM05D000959', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000959' ), 'data_identifier' => 'HOM05D000959', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000959', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '622', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p07100' => 'bna', 'A03p11720' => 'bna', 'A05p08300' => 'bna', 'A05p13380' => 'bna', 'A09p54130' => 'bna', 'A10p16690' => 'bna', 'A10p16700' => 'bna', 'A10p33390' => 'bna', 'Aa31LG10G16020' => 'aar', 'Aa31LG1G11810' => 'aar', 'Aa31LG1G11830' => 'aar', 'Aa31LG1G22510' => 'aar', 'Aa31LG5G4890' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5793' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2310' => 'aag', 'Actinidia08499' => 'ach', 'Actinidia11262' => 'ach', 'Actinidia23926' => 'ach', 'Actinidia34420' => 'ach', 'Actinidia36970' => 'ach', 'Ah.02g111220' => 'amhyb', 'Ah.15g097750' => 'amhyb', 'AL4G27500' => 'aly', 'AL6G11470' => 'aly', 'AL8G35950' => 'aly', 'AL8G35960' => 'aly', 'AL8G35970' => 'aly', 'Aqoxy1G00912' => 'aox', 'Aqoxy2G02253' => 'aox', 'Aqoxy2G02411' => 'aox', 'Aqoxy5G00485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BZ66YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K8ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM4FUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6BF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HFV7XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25JBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0YNNV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MAKK6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P70IT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP2Z6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V61LZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YWP64R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3S9AI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7PGHH' => 'arhy', 'AT2G32150' => 'ath', 'AT3G62040' => 'ath', 'AT5G02230' => 'ath', 'AT5G59480' => 'ath', 'AT5G59490' => 'ath', 'ATR0332G060' => 'atr', 'ATR0559G190' => 'atr', 'ATR0693G294' => 'atr', 'Atru.chr3.3975' => 'acertr', 'Atru.chr3.3976' => 'acertr', 'Atru.chr3.3977' => 'acertr', 'Atru.chr4.2498' => 'acertr', 'Atru.chr5.838' => 'acertr', 'Atru.chr8.1990' => 'acertr', 'Atru.chr8.1991' => 'acertr', 'Atru.chr8.1992' => 'acertr', 'AUR62001759' => 'cqu', 'AUR62009545' => 'cqu', 'AUR62010474' => 'cqu', 'AUR62025820' => 'cqu', 'AUR62030422' => 'cqu', 'AUR62033605' => 'cqu', 'AUR62038615' => 'cqu', 'AUR62041347' => 'cqu', 'BcaB01g04574' => 'bca', 'BcaB02g09263' => 'bca', 'BcaB02g10453' => 'bca', 'BcaB05g22513' => 'bca', 'BcaB08g36253' => 'bca', 'BcaB08g36254' => 'bca', 'BcaC01g06519' => 'bca', 'BcaC02g11889' => 'bca', 'BcaC03g14010' => 'bca', 'BcaC03g18439' => 'bca', 'BcaC04g19765' => 'bca', 'BcaC09g48432' => 'bca', 'BcaNung07302' => 'bca', 'BolC2t06040H' => 'bol', 'BolC2t07346H' => 'bol', 'BolC3t13817H' => 'bol', 'BolC4t22625H' => 'bol', 'BolC4t23297H' => 'bol', 'BolC8t51278H' => 'bol', 'BolC9t58050H' => 'bol', 'BolC9t58051H' => 'bol', 'BolC9t60163H' => 'bol', 'BraA02t04712Z' => 'bra', 'BraA02t05791Z' => 'bra', 'BraA03t10483Z' => 'bra', 'BraA05t19795Z' => 'bra', 'BraA05t20276Z' => 'bra', 'BraA09t40827Z' => 'bra', 'BraA10t43750Z' => 'bra', 'BraA10t43751Z' => 'bra', 'BraA10t45370Z' => 'bra', 'C02p00400' => 'bna', 'C02p12460' => 'bna', 'C03p13680' => 'bna', 'C04p10270' => 'bna', 'C04p17500' => 'bna', 'C08p37010' => 'bna', 'C09p51880' => 'bna', 'C09p51890' => 'bna', 'C09p74300' => 'bna', 'CAN.G179.26' => 'can', 'CAN.G3384.1' => 'can', 'CAN.G394.68' => 'can', 'CAN.G907.13' => 'can', 'CANSAT11G0012' => 'cansat', 'CANSAT25G1586' => 'cansat', 'CANSAT35G0735' => 'cansat', 'CANSAT54G0556' => 'cansat', 'CANSAT64G0356' => 'cansat', 'CANSAT78G2042' => 'cansat', 'CARHR125920' => 'chi', 'CARHR131910' => 'chi', 'CARHR172390' => 'chi', 'CARHR211140' => 'chi', 'CARHR285850' => 'chi', 'CARHR285860' => 'chi', 'Carub.0004s1347' => 'cru', 'Carub.0004s1960' => 'cru', 'Carub.0005s2880' => 'cru', 'Carub.0006s0107' => 'cru', 'Carub.0008s2015' => 'cru', 'Carub.0008s2016' => 'cru', 'Carub.0008s2017' => 'cru', 'Ca_01315_v3' => 'car', 'Ca_05063_v3' => 'car', 'Ca_10231_v3' => 'car', 'Ca_10913_v3' => 'car', 'Ca_19156_v3' => 'car', 'Ca_23644_v3' => 'car', 'Ca_26735_v3' => 'car', 'Cc01_g13130' => 'ccan', 'Cc02_g21690' => 'ccan', 'Cc03_g03600' => 'ccan', 'Cc06_g02510' => 'ccan', 'CDE02G1265' => 'cde', 'CDE05G0415' => 'cde', 'CDE08G1082' => 'cde', 'Cfa005780' => 'cfa', 'Cfa011522' => 'cfa', 'Cfa011523' => 'cfa', 'Cfa015627' => 'cfa', 'Cfa017359' => 'cfa', 'Ciclev10005687m.g' => 'ccl', 'Ciclev10012173m.g' => 'ccl', 'Ciclev10021621m.g' => 'ccl', 'Ciclev10028968m.g' => 'ccl', 'Ciclev10029907m.g' => 'ccl', 'CiPaw.01G164800' => 'cil', 'CiPaw.07G083700' => 'cil', 'CiPaw.07G127000' => 'cil', 'CiPaw.07G136900' => 'cil', 'CiPaw.08G081700' => 'cil', 'CiPaw.09G194600' => 'cil', 'CiPaw.10G146500' => 'cil', 'CiPaw.13G091500' => 'cil', 'CiPaw.13G091600' => 'cil', 'ClCG00G003390' => 'cla', 'ClCG01G007220' => 'cla', 'ClCG03G001370' => 'cla', 'ClCG04G008100' => 'cla', 'ClCG06G006110' => 'cla', 'ClCG06G006130' => 'cla', 'ClCG10G021210' => 'cla', 'COL.COLO4_07648' => 'col', 'COL.COLO4_07650' => 'col', 'COL.COLO4_07651' => 'col', 'COL.COLO4_14780' => 'col', 'COL.COLO4_18546' => 'col', 'COL.COLO4_18547' => 'col', 'COL.COLO4_23103' => 'col', 'COL.COLO4_30419' => 'col', 'COL.COLO4_34232' => 'col', 'Cpa.g.sc169.20' => 'cpa', 'Cpa.g.sc57.45' => 'cpa', 'Cpa.g.sc58.124' => 'cpa', 'Cpa.g.sc58.125' => 'cpa', 'Cpa.g.sc81.118' => 'cpa', 'Cpa.g.sc81.119' => 'cpa', 'Cre12.g524700' => 'cre', 'CsaV3_1G034430' => 'csa', 'CsaV3_1G034440' => 'csa', 'CsaV3_1G034450' => 'csa', 'CsaV3_3G034830' => 'csa', 'CsaV3_4G025090' => 'csa', 'CsaV3_5G018660' => 'csa', 'CsaV3_6G038160' => 'csa', 'CSS0003447' => 'camsi', 'CSS0017840' => 'camsi', 'CSS0019260' => 'camsi', 'CSS0040375' => 'camsi', 'CSS0042533' => 'camsi', 'DCAR_005960' => 'dca', 'DCAR_012104' => 'dca', 'DCAR_012105' => 'dca', 'DCAR_012293' => 'dca', 'DCAR_015632' => 'dca', 'DCAR_024602' => 'dca', 'DCAR_028752' => 'dca', 'Dinv06261' => 'din', 'Dinv13982' => 'din', 'Dinv17029' => 'din', 'Dinv18463' => 'din', 'Dinv33181' => 'din', 'Dinv35585' => 'din', 'Dinv37161' => 'din', 'Dinv42977' => 'din', 'Dinv43122' => 'din', 'Dinv44517' => 'din', 'Duzib093G0256' => 'dzi', 'Duzib106G1254' => 'dzi', 'Duzib128G1789' => 'dzi', 'Duzib133G0633' => 'dzi', 'Duzib138G0510' => 'dzi', 'Duzib150G1084' => 'dzi', 'Duzib168G0488' => 'dzi', 'Duzib168G1523' => 'dzi', 'Duzib170G0133' => 'dzi', 'ECA234G1433' => 'eca', 'ECA236G1432' => 'eca', 'ECA236G2256' => 'eca', 'ECA236G2365' => 'eca', 'ECA236G4830' => 'eca', 'ECA248G1505' => 'eca', 'EL10Ac3g06431' => 'bvu', 'EL10Ac5g12577' => 'bvu', 'EL10Ac6g13533' => 'bvu', 'EL10Ac7g16045' => 'bvu', 'Eucgr.A01281' => 'egr', 'Eucgr.B02326' => 'egr', 'Eucgr.H03532' => 'egr', 'Eucgr.K00553' => 'egr', 'Eucgr.K03116' => 'egr', 'FAN02G3963' => 'fan', 'FAN05G0438' => 'fan', 'FAN09G2434' => 'fan', 'FAN12G3984' => 'fan', 'FAN14G0798' => 'fan', 'FAN17G0652' => 'fan', 'FAN19G1988' => 'fan', 'FAN22G0632' => 'fan', 'FAN23G0387' => 'fan', 'FAN26G1323' => 'fan', 'FAN28G0666' => 'fan', 'FvH4_1g26080' => 'fve', 'FvH4_3g36780' => 'fve', 'FvH4_4g15270' => 'fve', 'FvH4_6g13490' => 'fve', 'Glyma.01G098700' => 'gma', 'Glyma.03G065900' => 'gma', 'Glyma.03G073754' => 'gma', 'Glyma.03G073758' => 'gma', 'Glyma.03G083200' => 'gma', 'Glyma.03G225500' => 'gma', 'Glyma.05G037766' => 'gma', 'Glyma.07G133500' => 'gma', 'Glyma.10G139400' => 'gma', 'Glyma.10G248900' => 'gma', 'Glyma.11G137800' => 'gma', 'Glyma.12G061300' => 'gma', 'Glyma.13G337900' => 'gma', 'Glyma.15G036600' => 'gma', 'Glyma.18G182800' => 'gma', 'Glyma.19G222500' => 'gma', 'Glyma.20G144800' => 'gma', 'Gohir.A01G222000' => 'ghi', 'Gohir.A03G044000' => 'ghi', 'Gohir.A03G044100' => 'ghi', 'Gohir.A04G083100' => 'ghi', 'Gohir.A07G127200' => 'ghi', 'Gohir.A07G132400' => 'ghi', 'Gohir.A08G000700' => 'ghi', 'Gohir.A11G327300' => 'ghi', 'Gohir.D01G211500' => 'ghi', 'Gohir.D03G123400' => 'ghi', 'Gohir.D03G123500' => 'ghi', 'Gohir.D04G121800' => 'ghi', 'Gohir.D07G131500' => 'ghi', 'Gohir.D07G136600' => 'ghi', 'Gohir.D08G011600' => 'ghi', 'Gohir.D11G346200' => 'ghi', 'Gorai.001G142800' => 'gra', 'Gorai.001G148700' => 'gra', 'Gorai.002G257300' => 'gra', 'Gorai.003G130000' => 'gra', 'Gorai.003G130100' => 'gra', 'Gorai.004G005300' => 'gra', 'Gorai.007G376500' => 'gra', 'Gorai.012G104700' => 'gra', 'GSVIVG01017946001' => 'vvi', 'GSVIVG01024928001' => 'vvi', 'GSVIVG01028227001' => 'vvi', 'GSVIVG01034151001' => 'vvi', 'HanXRQChr05g0135031' => 'han', 'HanXRQChr05g0135041' => 'han', 'HanXRQChr05g0140021' => 'han', 'HanXRQChr06g0178981' => 'han', 'HanXRQChr07g0188251' => 'han', 'HanXRQChr08g0235311' => 'han', 'HanXRQChr09g0271011' => 'han', 'HanXRQChr10g0293321' => 'han', 'HanXRQChr13g0388171' => 'han', 'Haze_00916' => 'cav', 'Haze_05063' => 'cav', 'Haze_20814' => 'cav', 'Haze_24128' => 'cav', 'Hma1.2p1_0745F.1_g212010' => 'hma', 'Hma1.2p1_0757F.1_g213260' => 'hma', 'Hma1.2p1_0936F.1_g238840' => 'hma', 'Hma1.2p1_1735F.1_g299890' => 'hma', 'Hma1.2p1_1861F.1_g305685' => 'hma', 'HPP92_003397' => 'vpl', 'HPP92_012597' => 'vpl', 'HPP92_015520' => 'vpl', 'HPP92_015539' => 'vpl', 'HPP92_020373' => 'vpl', 'Hund04938' => 'sun', 'Hund10677' => 'sun', 'Hund11033' => 'sun', 'Hund12155' => 'sun', 'Lalb_Chr01g0022551' => 'lal', 'Lalb_Chr03g0042341' => 'lal', 'Lalb_Chr07g0192931' => 'lal', 'Lalb_Chr12g0209551' => 'lal', 'Lalb_Chr19g0125251' => 'lal', 'Lalb_Chr19g0137891' => 'lal', 'Lalb_Chr21g0304641' => 'lal', 'Lalb_Chr21g0309881' => 'lal', 'Lj1A5T12' => 'lonja', 'Lj1C148G10' => 'lonja', 'Lj2A93T83' => 'lonja', 'Lj3A738G68' => 'lonja', 'Lj3C966T1' => 'lonja', 'Lj3g0018958' => 'lja', 'Lj3g0021831' => 'lja', 'Lj3g0025443' => 'lja', 'Lj4g0026809' => 'lja', 'Lj5g0012558' => 'lja', 'Lj5g0021586' => 'lja', 'Lsat_1_v5_gn_5_156840' => 'lsa', 'Lsat_1_v5_gn_8_73460' => 'lsa', 'Lsat_1_v5_gn_8_73481' => 'lsa', 'Lsat_1_v5_gn_9_31601' => 'lsa', 'Lsat_1_v5_gn_9_77320' => 'lsa', 'Manes.01G171300' => 'mes', 'Manes.01G171400' => 'mes', 'Manes.01G236100' => 'mes', 'Manes.02G130500' => 'mes', 'Manes.02G130600' => 'mes', 'Manes.03G180200' => 'mes', 'Manes.05G007000' => 'mes', 'Manes.08G084400' => 'mes', 'Manes.09G092600' => 'mes', 'Manes.15G027900' => 'mes', 'MBI04_g40948_MAGBIO' => 'mbi', 'MBI14_g12123_MAGBIO' => 'mbi', 'MBI18_g28915_MAGBIO' => 'mbi', 'MCO09G053' => 'mco', 'MCO11G782' => 'mco', 'MCO15G215' => 'mco', 'MD03G1088500' => 'mdo', 'MD03G1088600' => 'mdo', 'MD04G1130800' => 'mdo', 'MD09G1291700' => 'mdo', 'MD11G1097500' => 'mdo', 'MD11G1097600' => 'mdo', 'MD12G1143900' => 'mdo', 'MD13G1191400' => 'mdo', 'MD16G1191500' => 'mdo', 'Medtr1g085570' => 'mtr', 'Medtr1g104610' => 'mtr', 'Medtr2g097520' => 'mtr', 'Medtr4g021800' => 'mtr', 'Medtr4g021825' => 'mtr', 'Medtr4g064270' => 'mtr', 'Medtr4g064380' => 'mtr', 'Medtr7g062150' => 'mtr', 'MELO3C003138.2' => 'cme', 'MELO3C005187.2' => 'cme', 'MELO3C009252.2' => 'cme', 'MELO3C014481.2' => 'cme', 'MELO3C020616.2' => 'cme', 'MELO3C020617.2' => 'cme', 'MELO3C020618.2' => 'cme', 'Migut.G00328' => 'egut', 'Migut.J00320' => 'egut', 'Migut.L01000' => 'egut', 'Migut.L01953' => 'egut', 'MSTRG.10253' => 'ama', 'MSTRG.19077' => 'ama', 'MSTRG.26780' => 'ama', 'MSTRG.4023' => 'ama', 'MSTRG.5655' => 'ama', 'MSTRG.9992' => 'ama', 'Nitab4.5_0000043g0310' => 'nta', 'Nitab4.5_0000463g0080' => 'nta', 'Nitab4.5_0000705g0170' => 'nta', 'Nitab4.5_0001326g0060' => 'nta', 'Nitab4.5_0001628g0030' => 'nta', 'Nitab4.5_0002103g0110' => 'nta', 'Nitab4.5_0002946g0030' => 'nta', 'Nitab4.5_0004639g0030' => 'nta', 'Nn2g11149' => 'nnu', 'Nn2g13389' => 'nnu', 'Nn4g25326' => 'nnu', 'Nn4g26290' => 'nnu', 'Nn5g29865' => 'nnu', 'Oeu004163.1' => 'oeu', 'Oeu006901.1' => 'oeu', 'Oeu010096.1' => 'oeu', 'Oeu024340.1' => 'oeu', 'Oeu048369.1' => 'oeu', 'Os01g0973000' => 'osa', 'Os03g0273800' => 'osa', 'Os03g0701200' => 'osa', 'Os03g0834050' => 'osa', 'Os07g0634400' => 'osa', 'Peaxi162Scf00092g01414' => 'pax', 'Peaxi162Scf00165g00818' => 'pax', 'Peaxi162Scf00309g00516' => 'pax', 'Peaxi162Scf00774g00218' => 'pax', 'PGR004G1824' => 'pgr', 'PGR004G2606' => 'pgr', 'PGR031G2716' => 'pgr', 'PGR102G2460' => 'pgr', 'PGR142G2599' => 'pgr', 'PGSC0003DMG400000843' => 'stu', 'PGSC0003DMG400008829' => 'stu', 'PGSC0003DMG400030418' => 'stu', 'PGSC0003DMG400031834' => 'stu', 'PGSC0003DMG401028300' => 'stu', 'PGSC0003DMG402028300' => 'stu', 'Phvul.001G219300' => 'pvu', 'Phvul.007G056000' => 'pvu', 'Phvul.007G208000' => 'pvu', 'Phvul.008G119500' => 'pvu', 'Phvul.010G011200' => 'pvu', 'Phvul.010G014800' => 'pvu', 'Phvul.011G062900' => 'pvu', 'Phvul.L007043' => 'pvu', 'Potri.001G242300' => 'ptr', 'Potri.002G185300' => 'ptr', 'Potri.006G086900' => 'ptr', 'Potri.008G151700' => 'ptr', 'Potri.009G033500' => 'ptr', 'Potri.010G089300' => 'ptr', 'Potri.014G110800' => 'ptr', 'Pp3c27_8130' => 'ppa', 'Pp3c6_27410' => 'ppa', 'PRCOL_00001659' => 'pco', 'PRCOL_00001927' => 'pco', 'PRCOL_00003649' => 'pco', 'Prupe.1G011600' => 'ppe', 'Prupe.3G000800' => 'ppe', 'Prupe.3G001100' => 'ppe', 'Prupe.6G072700' => 'ppe', 'Prupe.6G072800' => 'ppe', 'Prupe.6G257300' => 'ppe', 'Prupe.8G033000' => 'ppe', 'Psat0s2633g0080' => 'psa', 'Psat0s3396g0080' => 'psa', 'Psat0s3396g0200' => 'psa', 'Psat3g139080' => 'psa', 'Psat5g285080' => 'psa', 'Psat6g157760' => 'psa', 'Psat6g208440' => 'psa', 'Psat7g215320' => 'psa', 'Psat7g215400' => 'psa', 'Psat7g235600' => 'psa', 'Psat7g235760' => 'psa', 'PSO063G4603' => 'pso', 'PSO210G0182' => 'pso', 'PSO210G0196' => 'pso', 'PSO339G0394' => 'pso', 'PSO339G4127' => 'pso', 'PSO513G0064' => 'pso', 'PSO761G0079' => 'pso', 'QL01p031003' => 'qlo', 'QL01p031078' => 'qlo', 'QL06p003004' => 'qlo', 'QL07p048731' => 'qlo', 'QL09p037427' => 'qlo', 'RcHm_v2.0_Chr3g0466361' => 'rch', 'RcHm_v2.0_Chr3g0485571' => 'rch', 'RcHm_v2.0_Chr4g0416551' => 'rch', 'RcHm_v2.0_Chr5g0065831' => 'rch', 'Rhsim01G0230500' => 'rsi', 'Rhsim05G0194000' => 'rsi', 'Rhsim08G0250400' => 'rsi', 'Sabra02G0131000' => 'sbr', 'Sabra06G0066300' => 'sbr', 'Sabra08G0115500' => 'sbr', 'Sabra09G0023900' => 'sbr', 'Sabra10G0054000' => 'sbr', 'Sabra14G0081500' => 'sbr', 'Sabra16G0147100' => 'sbr', 'SalBow2G2957' => 'sbo', 'SalBow4G3320' => 'sbo', 'SalBow8G1894' => 'sbo', 'Sc07g0007950' => 'sci', 'Sc12g0001360' => 'sci', 'Sc13g0004330' => 'sci', 'Sc20g0005010' => 'sci', 'Sed0000361' => 'sed', 'Sed0001706' => 'sed', 'Sed0002422' => 'sed', 'Sed0004029' => 'sed', 'Sed0004602' => 'sed', 'Sed0004943' => 'sed', 'Sed0008646' => 'sed', 'Sed0023313' => 'sed', 'Sed0024843' => 'sed', 'SEGI_00081' => 'sgi', 'SEGI_00947' => 'sgi', 'SEGI_04046' => 'sgi', 'SEGI_06880' => 'sgi', 'SEGI_09736' => 'sgi', 'SEGI_12741' => 'sgi', 'SEGI_14530' => 'sgi', 'SEGI_20705' => 'sgi', 'SEGI_26088' => 'sgi', 'SEGI_28323' => 'sgi', 'SEGI_33343' => 'sgi', 'SGA_v2.0_scaffold126G33775' => 'sas', 'SGA_v2.0_scaffold2G01337' => 'sas', 'SGA_v2.0_scaffold38G15006' => 'sas', 'SGA_v2.0_scaffold39G15264' => 'sas', 'SGA_v2.0_scaffold453G51880' => 'sas', 'SHI12696' => 'shi', 'SMO367G1096' => 'smo', 'Solyc01g068630.3' => 'sly', 'Solyc05g011880.3' => 'sly', 'Solyc06g076300.3' => 'sly', 'Solyc09g010940.4' => 'sly', 'Solyc09g075890.3' => 'sly', 'Sopen01g030560' => 'spe', 'Sopen05g006630' => 'spe', 'Sopen06g032720' => 'spe', 'Sopen09g005660' => 'spe', 'Sopen09g030690' => 'spe', 'Sp4g14540' => 'spa', 'Sp4g20030' => 'spa', 'Sp5g01320' => 'spa', 'Sp6g21170' => 'spa', 'Sp6g21180' => 'spa', 'Sp6g21190' => 'spa', 'Sp6g40220' => 'spa', 'TAR362G0122' => 'tar', 'TAR362G1338' => 'tar', 'TAR369G0590' => 'tar', 'TAR371G0824' => 'tar', 'TAR622G1429' => 'tar', 'TAR623G0734' => 'tar', 'TAR625G0441' => 'tar', 'TAR629G0976' => 'tar', 'TAR633G1195' => 'tar', 'TAR636G2660' => 'tar', 'THA.LOC104799440' => 'tha', 'THA.LOC104800966' => 'tha', 'THA.LOC104806559' => 'tha', 'THA.LOC104810765' => 'tha', 'THA.LOC104816266' => 'tha', 'THA.LOC104817419' => 'tha', 'THA.LOC104827021' => 'tha', 'Thecc.01G327400' => 'tca', 'Thecc.04G229200' => 'tca', 'Thecc.05G037400' => 'tca', 'Thecc.09G318600' => 'tca', 'Thecc.09G318700' => 'tca', 'Thhalv10006238m.g' => 'esa', 'Thhalv10014321m.g' => 'esa', 'Thhalv10014335m.g' => 'esa', 'Thhalv10015826m.g' => 'esa', 'Thhalv10017107m.g' => 'esa', 'Thhalv10017180m.g' => 'esa', 'Thhalv10029339m.g' => 'esa', 'TPR.G1699' => 'tpr', 'TPR.G23609' => 'tpr', 'TPR.G3081' => 'tpr', 'TPR.G40397' => 'tpr', 'TPR.G5522' => 'tpr', 'TPR.G5618' => 'tpr', 'TPR.G5626' => 'tpr', 'TWI09G1632' => 'twi', 'TWI23G1230' => 'twi', 'TWI53G1064' => 'twi', 'TWI59G0751' => 'twi', 'TWI74G0947' => 'twi', 'TWI77G0337' => 'twi', 'TWI79G1254' => 'twi', 'unitig_0.g2341' => 'ugi', 'unitig_26.g10006' => 'ugi', 'unitig_26.g10008' => 'ugi', 'unitig_26.g9192' => 'ugi', 'vmacro14547' => 'vma', 'vmacro15333' => 'vma', 'vmacro18743' => 'vma', 'vmacro20166' => 'vma', 'VMungo0331G0523' => 'vmu', 'VMungo0331G1202' => 'vmu', 'VMungo0720G1228' => 'vmu', 'VMungo0720G1514' => 'vmu', 'VMungo1080G0169' => 'vmu', 'VMungo1127G1475' => 'vmu', 'VMungo1383G1208' => 'vmu', 'VMungo1383G1698' => 'vmu', 'Zm00001eb012270' => 'zma', 'Zm00001eb054100' => 'zma', 'Zm00001eb063350' => 'zma', 'Zm00001eb328560' => 'zma', 'Zm00001eb342820' => 'zma', 'Zm00001eb362210' => 'zma', 'Zm00001eb397730' => 'zma', 'Zm00001eb399750' => 'zma' ) $gf_id = 'HOM05D000959' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000959' ) $data_identifier = 'HOM05D000959' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 5, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 5, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 10, 'mbi' => (int) 3, 'mco' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 2, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 3, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 11, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399750' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000959', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '622', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p07100' => 'bna', 'A03p11720' => 'bna', 'A05p08300' => 'bna', 'A05p13380' => 'bna', 'A09p54130' => 'bna', 'A10p16690' => 'bna', 'A10p16700' => 'bna', 'A10p33390' => 'bna', 'Aa31LG10G16020' => 'aar', 'Aa31LG1G11810' => 'aar', 'Aa31LG1G11830' => 'aar', 'Aa31LG1G22510' => 'aar', 'Aa31LG5G4890' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5793' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2310' => 'aag', 'Actinidia08499' => 'ach', 'Actinidia11262' => 'ach', 'Actinidia23926' => 'ach', 'Actinidia34420' => 'ach', 'Actinidia36970' => 'ach', 'Ah.02g111220' => 'amhyb', 'Ah.15g097750' => 'amhyb', 'AL4G27500' => 'aly', 'AL6G11470' => 'aly', 'AL8G35950' => 'aly', 'AL8G35960' => 'aly', 'AL8G35970' => 'aly', 'Aqoxy1G00912' => 'aox', 'Aqoxy2G02253' => 'aox', 'Aqoxy2G02411' => 'aox', 'Aqoxy5G00485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BZ66YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K8ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM4FUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6BF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HFV7XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25JBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0YNNV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MAKK6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P70IT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP2Z6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V61LZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YWP64R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3S9AI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7PGHH' => 'arhy', 'AT2G32150' => 'ath', 'AT3G62040' => 'ath', 'AT5G02230' => 'ath', 'AT5G59480' => 'ath', 'AT5G59490' => 'ath', 'ATR0332G060' => 'atr', 'ATR0559G190' => 'atr', 'ATR0693G294' => 'atr', 'Atru.chr3.3975' => 'acertr', 'Atru.chr3.3976' => 'acertr', 'Atru.chr3.3977' => 'acertr', 'Atru.chr4.2498' => 'acertr', 'Atru.chr5.838' => 'acertr', 'Atru.chr8.1990' => 'acertr', 'Atru.chr8.1991' => 'acertr', 'Atru.chr8.1992' => 'acertr', 'AUR62001759' => 'cqu', 'AUR62009545' => 'cqu', 'AUR62010474' => 'cqu', 'AUR62025820' => 'cqu', 'AUR62030422' => 'cqu', 'AUR62033605' => 'cqu', 'AUR62038615' => 'cqu', 'AUR62041347' => 'cqu', 'BcaB01g04574' => 'bca', 'BcaB02g09263' => 'bca', 'BcaB02g10453' => 'bca', 'BcaB05g22513' => 'bca', 'BcaB08g36253' => 'bca', 'BcaB08g36254' => 'bca', 'BcaC01g06519' => 'bca', 'BcaC02g11889' => 'bca', 'BcaC03g14010' => 'bca', 'BcaC03g18439' => 'bca', 'BcaC04g19765' => 'bca', 'BcaC09g48432' => 'bca', 'BcaNung07302' => 'bca', 'BolC2t06040H' => 'bol', 'BolC2t07346H' => 'bol', 'BolC3t13817H' => 'bol', 'BolC4t22625H' => 'bol', 'BolC4t23297H' => 'bol', 'BolC8t51278H' => 'bol', 'BolC9t58050H' => 'bol', 'BolC9t58051H' => 'bol', 'BolC9t60163H' => 'bol', 'BraA02t04712Z' => 'bra', 'BraA02t05791Z' => 'bra', 'BraA03t10483Z' => 'bra', 'BraA05t19795Z' => 'bra', 'BraA05t20276Z' => 'bra', 'BraA09t40827Z' => 'bra', 'BraA10t43750Z' => 'bra', 'BraA10t43751Z' => 'bra', 'BraA10t45370Z' => 'bra', 'C02p00400' => 'bna', 'C02p12460' => 'bna', 'C03p13680' => 'bna', 'C04p10270' => 'bna', 'C04p17500' => 'bna', 'C08p37010' => 'bna', 'C09p51880' => 'bna', 'C09p51890' => 'bna', 'C09p74300' => 'bna', 'CAN.G179.26' => 'can', 'CAN.G3384.1' => 'can', 'CAN.G394.68' => 'can', 'CAN.G907.13' => 'can', 'CANSAT11G0012' => 'cansat', 'CANSAT25G1586' => 'cansat', 'CANSAT35G0735' => 'cansat', 'CANSAT54G0556' => 'cansat', 'CANSAT64G0356' => 'cansat', 'CANSAT78G2042' => 'cansat', 'CARHR125920' => 'chi', 'CARHR131910' => 'chi', 'CARHR172390' => 'chi', 'CARHR211140' => 'chi', 'CARHR285850' => 'chi', 'CARHR285860' => 'chi', 'Carub.0004s1347' => 'cru', 'Carub.0004s1960' => 'cru', 'Carub.0005s2880' => 'cru', 'Carub.0006s0107' => 'cru', 'Carub.0008s2015' => 'cru', 'Carub.0008s2016' => 'cru', 'Carub.0008s2017' => 'cru', 'Ca_01315_v3' => 'car', 'Ca_05063_v3' => 'car', 'Ca_10231_v3' => 'car', 'Ca_10913_v3' => 'car', 'Ca_19156_v3' => 'car', 'Ca_23644_v3' => 'car', 'Ca_26735_v3' => 'car', 'Cc01_g13130' => 'ccan', 'Cc02_g21690' => 'ccan', 'Cc03_g03600' => 'ccan', 'Cc06_g02510' => 'ccan', 'CDE02G1265' => 'cde', 'CDE05G0415' => 'cde', 'CDE08G1082' => 'cde', 'Cfa005780' => 'cfa', 'Cfa011522' => 'cfa', 'Cfa011523' => 'cfa', 'Cfa015627' => 'cfa', 'Cfa017359' => 'cfa', 'Ciclev10005687m.g' => 'ccl', 'Ciclev10012173m.g' => 'ccl', 'Ciclev10021621m.g' => 'ccl', 'Ciclev10028968m.g' => 'ccl', 'Ciclev10029907m.g' => 'ccl', 'CiPaw.01G164800' => 'cil', 'CiPaw.07G083700' => 'cil', 'CiPaw.07G127000' => 'cil', 'CiPaw.07G136900' => 'cil', 'CiPaw.08G081700' => 'cil', 'CiPaw.09G194600' => 'cil', 'CiPaw.10G146500' => 'cil', 'CiPaw.13G091500' => 'cil', 'CiPaw.13G091600' => 'cil', 'ClCG00G003390' => 'cla', 'ClCG01G007220' => 'cla', 'ClCG03G001370' => 'cla', 'ClCG04G008100' => 'cla', 'ClCG06G006110' => 'cla', 'ClCG06G006130' => 'cla', 'ClCG10G021210' => 'cla', 'COL.COLO4_07648' => 'col', 'COL.COLO4_07650' => 'col', 'COL.COLO4_07651' => 'col', 'COL.COLO4_14780' => 'col', 'COL.COLO4_18546' => 'col', 'COL.COLO4_18547' => 'col', 'COL.COLO4_23103' => 'col', 'COL.COLO4_30419' => 'col', 'COL.COLO4_34232' => 'col', 'Cpa.g.sc169.20' => 'cpa', 'Cpa.g.sc57.45' => 'cpa', 'Cpa.g.sc58.124' => 'cpa', 'Cpa.g.sc58.125' => 'cpa', 'Cpa.g.sc81.118' => 'cpa', 'Cpa.g.sc81.119' => 'cpa', 'Cre12.g524700' => 'cre', 'CsaV3_1G034430' => 'csa', 'CsaV3_1G034440' => 'csa', 'CsaV3_1G034450' => 'csa', 'CsaV3_3G034830' => 'csa', 'CsaV3_4G025090' => 'csa', 'CsaV3_5G018660' => 'csa', 'CsaV3_6G038160' => 'csa', 'CSS0003447' => 'camsi', 'CSS0017840' => 'camsi', 'CSS0019260' => 'camsi', 'CSS0040375' => 'camsi', 'CSS0042533' => 'camsi', 'DCAR_005960' => 'dca', 'DCAR_012104' => 'dca', 'DCAR_012105' => 'dca', 'DCAR_012293' => 'dca', 'DCAR_015632' => 'dca', 'DCAR_024602' => 'dca', 'DCAR_028752' => 'dca', 'Dinv06261' => 'din', 'Dinv13982' => 'din', 'Dinv17029' => 'din', 'Dinv18463' => 'din', 'Dinv33181' => 'din', 'Dinv35585' => 'din', 'Dinv37161' => 'din', 'Dinv42977' => 'din', 'Dinv43122' => 'din', 'Dinv44517' => 'din', 'Duzib093G0256' => 'dzi', 'Duzib106G1254' => 'dzi', 'Duzib128G1789' => 'dzi', 'Duzib133G0633' => 'dzi', 'Duzib138G0510' => 'dzi', 'Duzib150G1084' => 'dzi', 'Duzib168G0488' => 'dzi', 'Duzib168G1523' => 'dzi', 'Duzib170G0133' => 'dzi', 'ECA234G1433' => 'eca', 'ECA236G1432' => 'eca', 'ECA236G2256' => 'eca', 'ECA236G2365' => 'eca', 'ECA236G4830' => 'eca', 'ECA248G1505' => 'eca', 'EL10Ac3g06431' => 'bvu', 'EL10Ac5g12577' => 'bvu', 'EL10Ac6g13533' => 'bvu', 'EL10Ac7g16045' => 'bvu', 'Eucgr.A01281' => 'egr', 'Eucgr.B02326' => 'egr', 'Eucgr.H03532' => 'egr', 'Eucgr.K00553' => 'egr', 'Eucgr.K03116' => 'egr', 'FAN02G3963' => 'fan', 'FAN05G0438' => 'fan', 'FAN09G2434' => 'fan', 'FAN12G3984' => 'fan', 'FAN14G0798' => 'fan', 'FAN17G0652' => 'fan', 'FAN19G1988' => 'fan', 'FAN22G0632' => 'fan', 'FAN23G0387' => 'fan', 'FAN26G1323' => 'fan', 'FAN28G0666' => 'fan', 'FvH4_1g26080' => 'fve', 'FvH4_3g36780' => 'fve', 'FvH4_4g15270' => 'fve', 'FvH4_6g13490' => 'fve', 'Glyma.01G098700' => 'gma', 'Glyma.03G065900' => 'gma', 'Glyma.03G073754' => 'gma', 'Glyma.03G073758' => 'gma', 'Glyma.03G083200' => 'gma', 'Glyma.03G225500' => 'gma', 'Glyma.05G037766' => 'gma', 'Glyma.07G133500' => 'gma', 'Glyma.10G139400' => 'gma', 'Glyma.10G248900' => 'gma', 'Glyma.11G137800' => 'gma', 'Glyma.12G061300' => 'gma', 'Glyma.13G337900' => 'gma', 'Glyma.15G036600' => 'gma', 'Glyma.18G182800' => 'gma', 'Glyma.19G222500' => 'gma', 'Glyma.20G144800' => 'gma', 'Gohir.A01G222000' => 'ghi', 'Gohir.A03G044000' => 'ghi', 'Gohir.A03G044100' => 'ghi', 'Gohir.A04G083100' => 'ghi', 'Gohir.A07G127200' => 'ghi', 'Gohir.A07G132400' => 'ghi', 'Gohir.A08G000700' => 'ghi', 'Gohir.A11G327300' => 'ghi', 'Gohir.D01G211500' => 'ghi', 'Gohir.D03G123400' => 'ghi', 'Gohir.D03G123500' => 'ghi', 'Gohir.D04G121800' => 'ghi', 'Gohir.D07G131500' => 'ghi', 'Gohir.D07G136600' => 'ghi', 'Gohir.D08G011600' => 'ghi', 'Gohir.D11G346200' => 'ghi', 'Gorai.001G142800' => 'gra', 'Gorai.001G148700' => 'gra', 'Gorai.002G257300' => 'gra', 'Gorai.003G130000' => 'gra', 'Gorai.003G130100' => 'gra', 'Gorai.004G005300' => 'gra', 'Gorai.007G376500' => 'gra', 'Gorai.012G104700' => 'gra', 'GSVIVG01017946001' => 'vvi', 'GSVIVG01024928001' => 'vvi', 'GSVIVG01028227001' => 'vvi', 'GSVIVG01034151001' => 'vvi', 'HanXRQChr05g0135031' => 'han', 'HanXRQChr05g0135041' => 'han', 'HanXRQChr05g0140021' => 'han', 'HanXRQChr06g0178981' => 'han', 'HanXRQChr07g0188251' => 'han', 'HanXRQChr08g0235311' => 'han', 'HanXRQChr09g0271011' => 'han', 'HanXRQChr10g0293321' => 'han', 'HanXRQChr13g0388171' => 'han', 'Haze_00916' => 'cav', 'Haze_05063' => 'cav', 'Haze_20814' => 'cav', 'Haze_24128' => 'cav', 'Hma1.2p1_0745F.1_g212010' => 'hma', 'Hma1.2p1_0757F.1_g213260' => 'hma', 'Hma1.2p1_0936F.1_g238840' => 'hma', 'Hma1.2p1_1735F.1_g299890' => 'hma', 'Hma1.2p1_1861F.1_g305685' => 'hma', 'HPP92_003397' => 'vpl', 'HPP92_012597' => 'vpl', 'HPP92_015520' => 'vpl', 'HPP92_015539' => 'vpl', 'HPP92_020373' => 'vpl', 'Hund04938' => 'sun', 'Hund10677' => 'sun', 'Hund11033' => 'sun', 'Hund12155' => 'sun', 'Lalb_Chr01g0022551' => 'lal', 'Lalb_Chr03g0042341' => 'lal', 'Lalb_Chr07g0192931' => 'lal', 'Lalb_Chr12g0209551' => 'lal', 'Lalb_Chr19g0125251' => 'lal', 'Lalb_Chr19g0137891' => 'lal', 'Lalb_Chr21g0304641' => 'lal', 'Lalb_Chr21g0309881' => 'lal', 'Lj1A5T12' => 'lonja', 'Lj1C148G10' => 'lonja', 'Lj2A93T83' => 'lonja', 'Lj3A738G68' => 'lonja', 'Lj3C966T1' => 'lonja', 'Lj3g0018958' => 'lja', 'Lj3g0021831' => 'lja', 'Lj3g0025443' => 'lja', 'Lj4g0026809' => 'lja', 'Lj5g0012558' => 'lja', 'Lj5g0021586' => 'lja', 'Lsat_1_v5_gn_5_156840' => 'lsa', 'Lsat_1_v5_gn_8_73460' => 'lsa', 'Lsat_1_v5_gn_8_73481' => 'lsa', 'Lsat_1_v5_gn_9_31601' => 'lsa', 'Lsat_1_v5_gn_9_77320' => 'lsa', 'Manes.01G171300' => 'mes', 'Manes.01G171400' => 'mes', 'Manes.01G236100' => 'mes', 'Manes.02G130500' => 'mes', 'Manes.02G130600' => 'mes', 'Manes.03G180200' => 'mes', 'Manes.05G007000' => 'mes', 'Manes.08G084400' => 'mes', 'Manes.09G092600' => 'mes', 'Manes.15G027900' => 'mes', 'MBI04_g40948_MAGBIO' => 'mbi', 'MBI14_g12123_MAGBIO' => 'mbi', 'MBI18_g28915_MAGBIO' => 'mbi', 'MCO09G053' => 'mco', 'MCO11G782' => 'mco', 'MCO15G215' => 'mco', 'MD03G1088500' => 'mdo', 'MD03G1088600' => 'mdo', 'MD04G1130800' => 'mdo', 'MD09G1291700' => 'mdo', 'MD11G1097500' => 'mdo', 'MD11G1097600' => 'mdo', 'MD12G1143900' => 'mdo', 'MD13G1191400' => 'mdo', 'MD16G1191500' => 'mdo', 'Medtr1g085570' => 'mtr', 'Medtr1g104610' => 'mtr', 'Medtr2g097520' => 'mtr', 'Medtr4g021800' => 'mtr', 'Medtr4g021825' => 'mtr', 'Medtr4g064270' => 'mtr', 'Medtr4g064380' => 'mtr', 'Medtr7g062150' => 'mtr', 'MELO3C003138.2' => 'cme', 'MELO3C005187.2' => 'cme', 'MELO3C009252.2' => 'cme', 'MELO3C014481.2' => 'cme', 'MELO3C020616.2' => 'cme', 'MELO3C020617.2' => 'cme', 'MELO3C020618.2' => 'cme', 'Migut.G00328' => 'egut', 'Migut.J00320' => 'egut', 'Migut.L01000' => 'egut', 'Migut.L01953' => 'egut', 'MSTRG.10253' => 'ama', 'MSTRG.19077' => 'ama', 'MSTRG.26780' => 'ama', 'MSTRG.4023' => 'ama', 'MSTRG.5655' => 'ama', 'MSTRG.9992' => 'ama', 'Nitab4.5_0000043g0310' => 'nta', 'Nitab4.5_0000463g0080' => 'nta', 'Nitab4.5_0000705g0170' => 'nta', 'Nitab4.5_0001326g0060' => 'nta', 'Nitab4.5_0001628g0030' => 'nta', 'Nitab4.5_0002103g0110' => 'nta', 'Nitab4.5_0002946g0030' => 'nta', 'Nitab4.5_0004639g0030' => 'nta', 'Nn2g11149' => 'nnu', 'Nn2g13389' => 'nnu', 'Nn4g25326' => 'nnu', 'Nn4g26290' => 'nnu', 'Nn5g29865' => 'nnu', 'Oeu004163.1' => 'oeu', 'Oeu006901.1' => 'oeu', 'Oeu010096.1' => 'oeu', 'Oeu024340.1' => 'oeu', 'Oeu048369.1' => 'oeu', 'Os01g0973000' => 'osa', 'Os03g0273800' => 'osa', 'Os03g0701200' => 'osa', 'Os03g0834050' => 'osa', 'Os07g0634400' => 'osa', 'Peaxi162Scf00092g01414' => 'pax', 'Peaxi162Scf00165g00818' => 'pax', 'Peaxi162Scf00309g00516' => 'pax', 'Peaxi162Scf00774g00218' => 'pax', 'PGR004G1824' => 'pgr', 'PGR004G2606' => 'pgr', 'PGR031G2716' => 'pgr', 'PGR102G2460' => 'pgr', 'PGR142G2599' => 'pgr', 'PGSC0003DMG400000843' => 'stu', 'PGSC0003DMG400008829' => 'stu', 'PGSC0003DMG400030418' => 'stu', 'PGSC0003DMG400031834' => 'stu', 'PGSC0003DMG401028300' => 'stu', 'PGSC0003DMG402028300' => 'stu', 'Phvul.001G219300' => 'pvu', 'Phvul.007G056000' => 'pvu', 'Phvul.007G208000' => 'pvu', 'Phvul.008G119500' => 'pvu', 'Phvul.010G011200' => 'pvu', 'Phvul.010G014800' => 'pvu', 'Phvul.011G062900' => 'pvu', 'Phvul.L007043' => 'pvu', 'Potri.001G242300' => 'ptr', 'Potri.002G185300' => 'ptr', 'Potri.006G086900' => 'ptr', 'Potri.008G151700' => 'ptr', 'Potri.009G033500' => 'ptr', 'Potri.010G089300' => 'ptr', 'Potri.014G110800' => 'ptr', 'Pp3c27_8130' => 'ppa', 'Pp3c6_27410' => 'ppa', 'PRCOL_00001659' => 'pco', 'PRCOL_00001927' => 'pco', 'PRCOL_00003649' => 'pco', 'Prupe.1G011600' => 'ppe', 'Prupe.3G000800' => 'ppe', 'Prupe.3G001100' => 'ppe', 'Prupe.6G072700' => 'ppe', 'Prupe.6G072800' => 'ppe', 'Prupe.6G257300' => 'ppe', 'Prupe.8G033000' => 'ppe', 'Psat0s2633g0080' => 'psa', 'Psat0s3396g0080' => 'psa', 'Psat0s3396g0200' => 'psa', 'Psat3g139080' => 'psa', 'Psat5g285080' => 'psa', 'Psat6g157760' => 'psa', 'Psat6g208440' => 'psa', 'Psat7g215320' => 'psa', 'Psat7g215400' => 'psa', 'Psat7g235600' => 'psa', 'Psat7g235760' => 'psa', 'PSO063G4603' => 'pso', 'PSO210G0182' => 'pso', 'PSO210G0196' => 'pso', 'PSO339G0394' => 'pso', 'PSO339G4127' => 'pso', 'PSO513G0064' => 'pso', 'PSO761G0079' => 'pso', 'QL01p031003' => 'qlo', 'QL01p031078' => 'qlo', 'QL06p003004' => 'qlo', 'QL07p048731' => 'qlo', 'QL09p037427' => 'qlo', 'RcHm_v2.0_Chr3g0466361' => 'rch', 'RcHm_v2.0_Chr3g0485571' => 'rch', 'RcHm_v2.0_Chr4g0416551' => 'rch', 'RcHm_v2.0_Chr5g0065831' => 'rch', 'Rhsim01G0230500' => 'rsi', 'Rhsim05G0194000' => 'rsi', 'Rhsim08G0250400' => 'rsi', 'Sabra02G0131000' => 'sbr', 'Sabra06G0066300' => 'sbr', 'Sabra08G0115500' => 'sbr', 'Sabra09G0023900' => 'sbr', 'Sabra10G0054000' => 'sbr', 'Sabra14G0081500' => 'sbr', 'Sabra16G0147100' => 'sbr', 'SalBow2G2957' => 'sbo', 'SalBow4G3320' => 'sbo', 'SalBow8G1894' => 'sbo', 'Sc07g0007950' => 'sci', 'Sc12g0001360' => 'sci', 'Sc13g0004330' => 'sci', 'Sc20g0005010' => 'sci', 'Sed0000361' => 'sed', 'Sed0001706' => 'sed', 'Sed0002422' => 'sed', 'Sed0004029' => 'sed', 'Sed0004602' => 'sed', 'Sed0004943' => 'sed', 'Sed0008646' => 'sed', 'Sed0023313' => 'sed', 'Sed0024843' => 'sed', 'SEGI_00081' => 'sgi', 'SEGI_00947' => 'sgi', 'SEGI_04046' => 'sgi', 'SEGI_06880' => 'sgi', 'SEGI_09736' => 'sgi', 'SEGI_12741' => 'sgi', 'SEGI_14530' => 'sgi', 'SEGI_20705' => 'sgi', 'SEGI_26088' => 'sgi', 'SEGI_28323' => 'sgi', 'SEGI_33343' => 'sgi', 'SGA_v2.0_scaffold126G33775' => 'sas', 'SGA_v2.0_scaffold2G01337' => 'sas', 'SGA_v2.0_scaffold38G15006' => 'sas', 'SGA_v2.0_scaffold39G15264' => 'sas', 'SGA_v2.0_scaffold453G51880' => 'sas', 'SHI12696' => 'shi', 'SMO367G1096' => 'smo', 'Solyc01g068630.3' => 'sly', 'Solyc05g011880.3' => 'sly', 'Solyc06g076300.3' => 'sly', 'Solyc09g010940.4' => 'sly', 'Solyc09g075890.3' => 'sly', 'Sopen01g030560' => 'spe', 'Sopen05g006630' => 'spe', 'Sopen06g032720' => 'spe', 'Sopen09g005660' => 'spe', 'Sopen09g030690' => 'spe', 'Sp4g14540' => 'spa', 'Sp4g20030' => 'spa', 'Sp5g01320' => 'spa', 'Sp6g21170' => 'spa', 'Sp6g21180' => 'spa', 'Sp6g21190' => 'spa', 'Sp6g40220' => 'spa', 'TAR362G0122' => 'tar', 'TAR362G1338' => 'tar', 'TAR369G0590' => 'tar', 'TAR371G0824' => 'tar', 'TAR622G1429' => 'tar', 'TAR623G0734' => 'tar', 'TAR625G0441' => 'tar', 'TAR629G0976' => 'tar', 'TAR633G1195' => 'tar', 'TAR636G2660' => 'tar', 'THA.LOC104799440' => 'tha', 'THA.LOC104800966' => 'tha', 'THA.LOC104806559' => 'tha', 'THA.LOC104810765' => 'tha', 'THA.LOC104816266' => 'tha', 'THA.LOC104817419' => 'tha', 'THA.LOC104827021' => 'tha', 'Thecc.01G327400' => 'tca', 'Thecc.04G229200' => 'tca', 'Thecc.05G037400' => 'tca', 'Thecc.09G318600' => 'tca', 'Thecc.09G318700' => 'tca', 'Thhalv10006238m.g' => 'esa', 'Thhalv10014321m.g' => 'esa', 'Thhalv10014335m.g' => 'esa', 'Thhalv10015826m.g' => 'esa', 'Thhalv10017107m.g' => 'esa', 'Thhalv10017180m.g' => 'esa', 'Thhalv10029339m.g' => 'esa', 'TPR.G1699' => 'tpr', 'TPR.G23609' => 'tpr', 'TPR.G3081' => 'tpr', 'TPR.G40397' => 'tpr', 'TPR.G5522' => 'tpr', 'TPR.G5618' => 'tpr', 'TPR.G5626' => 'tpr', 'TWI09G1632' => 'twi', 'TWI23G1230' => 'twi', 'TWI53G1064' => 'twi', 'TWI59G0751' => 'twi', 'TWI74G0947' => 'twi', 'TWI77G0337' => 'twi', 'TWI79G1254' => 'twi', 'unitig_0.g2341' => 'ugi', 'unitig_26.g10006' => 'ugi', 'unitig_26.g10008' => 'ugi', 'unitig_26.g9192' => 'ugi', 'vmacro14547' => 'vma', 'vmacro15333' => 'vma', 'vmacro18743' => 'vma', 'vmacro20166' => 'vma', 'VMungo0331G0523' => 'vmu', 'VMungo0331G1202' => 'vmu', 'VMungo0720G1228' => 'vmu', 'VMungo0720G1514' => 'vmu', 'VMungo1080G0169' => 'vmu', 'VMungo1127G1475' => 'vmu', 'VMungo1383G1208' => 'vmu', 'VMungo1383G1698' => 'vmu', 'Zm00001eb012270' => 'zma', 'Zm00001eb054100' => 'zma', 'Zm00001eb063350' => 'zma', 'Zm00001eb328560' => 'zma', 'Zm00001eb342820' => 'zma', 'Zm00001eb362210' => 'zma', 'Zm00001eb397730' => 'zma', 'Zm00001eb399750' => 'zma' ), 'gf_id' => 'HOM05D000959', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000959' ), 'data_identifier' => 'HOM05D000959', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000959', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '622', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p07100' => 'bna', 'A03p11720' => 'bna', 'A05p08300' => 'bna', 'A05p13380' => 'bna', 'A09p54130' => 'bna', 'A10p16690' => 'bna', 'A10p16700' => 'bna', 'A10p33390' => 'bna', 'Aa31LG10G16020' => 'aar', 'Aa31LG1G11810' => 'aar', 'Aa31LG1G11830' => 'aar', 'Aa31LG1G22510' => 'aar', 'Aa31LG5G4890' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5793' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2310' => 'aag', 'Actinidia08499' => 'ach', 'Actinidia11262' => 'ach', 'Actinidia23926' => 'ach', 'Actinidia34420' => 'ach', 'Actinidia36970' => 'ach', 'Ah.02g111220' => 'amhyb', 'Ah.15g097750' => 'amhyb', 'AL4G27500' => 'aly', 'AL6G11470' => 'aly', 'AL8G35950' => 'aly', 'AL8G35960' => 'aly', 'AL8G35970' => 'aly', 'Aqoxy1G00912' => 'aox', 'Aqoxy2G02253' => 'aox', 'Aqoxy2G02411' => 'aox', 'Aqoxy5G00485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BZ66YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K8ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM4FUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6BF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HFV7XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25JBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0YNNV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MAKK6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P70IT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP2Z6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V61LZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YWP64R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3S9AI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7PGHH' => 'arhy', 'AT2G32150' => 'ath', 'AT3G62040' => 'ath', 'AT5G02230' => 'ath', 'AT5G59480' => 'ath', 'AT5G59490' => 'ath', 'ATR0332G060' => 'atr', 'ATR0559G190' => 'atr', 'ATR0693G294' => 'atr', 'Atru.chr3.3975' => 'acertr', 'Atru.chr3.3976' => 'acertr', 'Atru.chr3.3977' => 'acertr', 'Atru.chr4.2498' => 'acertr', 'Atru.chr5.838' => 'acertr', 'Atru.chr8.1990' => 'acertr', 'Atru.chr8.1991' => 'acertr', 'Atru.chr8.1992' => 'acertr', 'AUR62001759' => 'cqu', 'AUR62009545' => 'cqu', 'AUR62010474' => 'cqu', 'AUR62025820' => 'cqu', 'AUR62030422' => 'cqu', 'AUR62033605' => 'cqu', 'AUR62038615' => 'cqu', 'AUR62041347' => 'cqu', 'BcaB01g04574' => 'bca', 'BcaB02g09263' => 'bca', 'BcaB02g10453' => 'bca', 'BcaB05g22513' => 'bca', 'BcaB08g36253' => 'bca', 'BcaB08g36254' => 'bca', 'BcaC01g06519' => 'bca', 'BcaC02g11889' => 'bca', 'BcaC03g14010' => 'bca', 'BcaC03g18439' => 'bca', 'BcaC04g19765' => 'bca', 'BcaC09g48432' => 'bca', 'BcaNung07302' => 'bca', 'BolC2t06040H' => 'bol', 'BolC2t07346H' => 'bol', 'BolC3t13817H' => 'bol', 'BolC4t22625H' => 'bol', 'BolC4t23297H' => 'bol', 'BolC8t51278H' => 'bol', 'BolC9t58050H' => 'bol', 'BolC9t58051H' => 'bol', 'BolC9t60163H' => 'bol', 'BraA02t04712Z' => 'bra', 'BraA02t05791Z' => 'bra', 'BraA03t10483Z' => 'bra', 'BraA05t19795Z' => 'bra', 'BraA05t20276Z' => 'bra', 'BraA09t40827Z' => 'bra', 'BraA10t43750Z' => 'bra', 'BraA10t43751Z' => 'bra', 'BraA10t45370Z' => 'bra', 'C02p00400' => 'bna', 'C02p12460' => 'bna', 'C03p13680' => 'bna', 'C04p10270' => 'bna', 'C04p17500' => 'bna', 'C08p37010' => 'bna', 'C09p51880' => 'bna', 'C09p51890' => 'bna', 'C09p74300' => 'bna', 'CAN.G179.26' => 'can', 'CAN.G3384.1' => 'can', 'CAN.G394.68' => 'can', 'CAN.G907.13' => 'can', 'CANSAT11G0012' => 'cansat', 'CANSAT25G1586' => 'cansat', 'CANSAT35G0735' => 'cansat', 'CANSAT54G0556' => 'cansat', 'CANSAT64G0356' => 'cansat', 'CANSAT78G2042' => 'cansat', 'CARHR125920' => 'chi', 'CARHR131910' => 'chi', 'CARHR172390' => 'chi', 'CARHR211140' => 'chi', 'CARHR285850' => 'chi', 'CARHR285860' => 'chi', 'Carub.0004s1347' => 'cru', 'Carub.0004s1960' => 'cru', 'Carub.0005s2880' => 'cru', 'Carub.0006s0107' => 'cru', 'Carub.0008s2015' => 'cru', 'Carub.0008s2016' => 'cru', 'Carub.0008s2017' => 'cru', 'Ca_01315_v3' => 'car', 'Ca_05063_v3' => 'car', 'Ca_10231_v3' => 'car', 'Ca_10913_v3' => 'car', 'Ca_19156_v3' => 'car', 'Ca_23644_v3' => 'car', 'Ca_26735_v3' => 'car', 'Cc01_g13130' => 'ccan', 'Cc02_g21690' => 'ccan', 'Cc03_g03600' => 'ccan', 'Cc06_g02510' => 'ccan', 'CDE02G1265' => 'cde', 'CDE05G0415' => 'cde', 'CDE08G1082' => 'cde', 'Cfa005780' => 'cfa', 'Cfa011522' => 'cfa', 'Cfa011523' => 'cfa', 'Cfa015627' => 'cfa', 'Cfa017359' => 'cfa', 'Ciclev10005687m.g' => 'ccl', 'Ciclev10012173m.g' => 'ccl', 'Ciclev10021621m.g' => 'ccl', 'Ciclev10028968m.g' => 'ccl', 'Ciclev10029907m.g' => 'ccl', 'CiPaw.01G164800' => 'cil', 'CiPaw.07G083700' => 'cil', 'CiPaw.07G127000' => 'cil', 'CiPaw.07G136900' => 'cil', 'CiPaw.08G081700' => 'cil', 'CiPaw.09G194600' => 'cil', 'CiPaw.10G146500' => 'cil', 'CiPaw.13G091500' => 'cil', 'CiPaw.13G091600' => 'cil', 'ClCG00G003390' => 'cla', 'ClCG01G007220' => 'cla', 'ClCG03G001370' => 'cla', 'ClCG04G008100' => 'cla', 'ClCG06G006110' => 'cla', 'ClCG06G006130' => 'cla', 'ClCG10G021210' => 'cla', 'COL.COLO4_07648' => 'col', 'COL.COLO4_07650' => 'col', 'COL.COLO4_07651' => 'col', 'COL.COLO4_14780' => 'col', 'COL.COLO4_18546' => 'col', 'COL.COLO4_18547' => 'col', 'COL.COLO4_23103' => 'col', 'COL.COLO4_30419' => 'col', 'COL.COLO4_34232' => 'col', 'Cpa.g.sc169.20' => 'cpa', 'Cpa.g.sc57.45' => 'cpa', 'Cpa.g.sc58.124' => 'cpa', 'Cpa.g.sc58.125' => 'cpa', 'Cpa.g.sc81.118' => 'cpa', 'Cpa.g.sc81.119' => 'cpa', 'Cre12.g524700' => 'cre', 'CsaV3_1G034430' => 'csa', 'CsaV3_1G034440' => 'csa', 'CsaV3_1G034450' => 'csa', 'CsaV3_3G034830' => 'csa', 'CsaV3_4G025090' => 'csa', 'CsaV3_5G018660' => 'csa', 'CsaV3_6G038160' => 'csa', 'CSS0003447' => 'camsi', 'CSS0017840' => 'camsi', 'CSS0019260' => 'camsi', 'CSS0040375' => 'camsi', 'CSS0042533' => 'camsi', 'DCAR_005960' => 'dca', 'DCAR_012104' => 'dca', 'DCAR_012105' => 'dca', 'DCAR_012293' => 'dca', 'DCAR_015632' => 'dca', 'DCAR_024602' => 'dca', 'DCAR_028752' => 'dca', 'Dinv06261' => 'din', 'Dinv13982' => 'din', 'Dinv17029' => 'din', 'Dinv18463' => 'din', 'Dinv33181' => 'din', 'Dinv35585' => 'din', 'Dinv37161' => 'din', 'Dinv42977' => 'din', 'Dinv43122' => 'din', 'Dinv44517' => 'din', 'Duzib093G0256' => 'dzi', 'Duzib106G1254' => 'dzi', 'Duzib128G1789' => 'dzi', 'Duzib133G0633' => 'dzi', 'Duzib138G0510' => 'dzi', 'Duzib150G1084' => 'dzi', 'Duzib168G0488' => 'dzi', 'Duzib168G1523' => 'dzi', 'Duzib170G0133' => 'dzi', 'ECA234G1433' => 'eca', 'ECA236G1432' => 'eca', 'ECA236G2256' => 'eca', 'ECA236G2365' => 'eca', 'ECA236G4830' => 'eca', 'ECA248G1505' => 'eca', 'EL10Ac3g06431' => 'bvu', 'EL10Ac5g12577' => 'bvu', 'EL10Ac6g13533' => 'bvu', 'EL10Ac7g16045' => 'bvu', 'Eucgr.A01281' => 'egr', 'Eucgr.B02326' => 'egr', 'Eucgr.H03532' => 'egr', 'Eucgr.K00553' => 'egr', 'Eucgr.K03116' => 'egr', 'FAN02G3963' => 'fan', 'FAN05G0438' => 'fan', 'FAN09G2434' => 'fan', 'FAN12G3984' => 'fan', 'FAN14G0798' => 'fan', 'FAN17G0652' => 'fan', 'FAN19G1988' => 'fan', 'FAN22G0632' => 'fan', 'FAN23G0387' => 'fan', 'FAN26G1323' => 'fan', 'FAN28G0666' => 'fan', 'FvH4_1g26080' => 'fve', 'FvH4_3g36780' => 'fve', 'FvH4_4g15270' => 'fve', 'FvH4_6g13490' => 'fve', 'Glyma.01G098700' => 'gma', 'Glyma.03G065900' => 'gma', 'Glyma.03G073754' => 'gma', 'Glyma.03G073758' => 'gma', 'Glyma.03G083200' => 'gma', 'Glyma.03G225500' => 'gma', 'Glyma.05G037766' => 'gma', 'Glyma.07G133500' => 'gma', 'Glyma.10G139400' => 'gma', 'Glyma.10G248900' => 'gma', 'Glyma.11G137800' => 'gma', 'Glyma.12G061300' => 'gma', 'Glyma.13G337900' => 'gma', 'Glyma.15G036600' => 'gma', 'Glyma.18G182800' => 'gma', 'Glyma.19G222500' => 'gma', 'Glyma.20G144800' => 'gma', 'Gohir.A01G222000' => 'ghi', 'Gohir.A03G044000' => 'ghi', 'Gohir.A03G044100' => 'ghi', 'Gohir.A04G083100' => 'ghi', 'Gohir.A07G127200' => 'ghi', 'Gohir.A07G132400' => 'ghi', 'Gohir.A08G000700' => 'ghi', 'Gohir.A11G327300' => 'ghi', 'Gohir.D01G211500' => 'ghi', 'Gohir.D03G123400' => 'ghi', 'Gohir.D03G123500' => 'ghi', 'Gohir.D04G121800' => 'ghi', 'Gohir.D07G131500' => 'ghi', 'Gohir.D07G136600' => 'ghi', 'Gohir.D08G011600' => 'ghi', 'Gohir.D11G346200' => 'ghi', 'Gorai.001G142800' => 'gra', 'Gorai.001G148700' => 'gra', 'Gorai.002G257300' => 'gra', 'Gorai.003G130000' => 'gra', 'Gorai.003G130100' => 'gra', 'Gorai.004G005300' => 'gra', 'Gorai.007G376500' => 'gra', 'Gorai.012G104700' => 'gra', 'GSVIVG01017946001' => 'vvi', 'GSVIVG01024928001' => 'vvi', 'GSVIVG01028227001' => 'vvi', 'GSVIVG01034151001' => 'vvi', 'HanXRQChr05g0135031' => 'han', 'HanXRQChr05g0135041' => 'han', 'HanXRQChr05g0140021' => 'han', 'HanXRQChr06g0178981' => 'han', 'HanXRQChr07g0188251' => 'han', 'HanXRQChr08g0235311' => 'han', 'HanXRQChr09g0271011' => 'han', 'HanXRQChr10g0293321' => 'han', 'HanXRQChr13g0388171' => 'han', 'Haze_00916' => 'cav', 'Haze_05063' => 'cav', 'Haze_20814' => 'cav', 'Haze_24128' => 'cav', 'Hma1.2p1_0745F.1_g212010' => 'hma', 'Hma1.2p1_0757F.1_g213260' => 'hma', 'Hma1.2p1_0936F.1_g238840' => 'hma', 'Hma1.2p1_1735F.1_g299890' => 'hma', 'Hma1.2p1_1861F.1_g305685' => 'hma', 'HPP92_003397' => 'vpl', 'HPP92_012597' => 'vpl', 'HPP92_015520' => 'vpl', 'HPP92_015539' => 'vpl', 'HPP92_020373' => 'vpl', 'Hund04938' => 'sun', 'Hund10677' => 'sun', 'Hund11033' => 'sun', 'Hund12155' => 'sun', 'Lalb_Chr01g0022551' => 'lal', 'Lalb_Chr03g0042341' => 'lal', 'Lalb_Chr07g0192931' => 'lal', 'Lalb_Chr12g0209551' => 'lal', 'Lalb_Chr19g0125251' => 'lal', 'Lalb_Chr19g0137891' => 'lal', 'Lalb_Chr21g0304641' => 'lal', 'Lalb_Chr21g0309881' => 'lal', 'Lj1A5T12' => 'lonja', 'Lj1C148G10' => 'lonja', 'Lj2A93T83' => 'lonja', 'Lj3A738G68' => 'lonja', 'Lj3C966T1' => 'lonja', 'Lj3g0018958' => 'lja', 'Lj3g0021831' => 'lja', 'Lj3g0025443' => 'lja', 'Lj4g0026809' => 'lja', 'Lj5g0012558' => 'lja', 'Lj5g0021586' => 'lja', 'Lsat_1_v5_gn_5_156840' => 'lsa', 'Lsat_1_v5_gn_8_73460' => 'lsa', 'Lsat_1_v5_gn_8_73481' => 'lsa', 'Lsat_1_v5_gn_9_31601' => 'lsa', 'Lsat_1_v5_gn_9_77320' => 'lsa', 'Manes.01G171300' => 'mes', 'Manes.01G171400' => 'mes', 'Manes.01G236100' => 'mes', 'Manes.02G130500' => 'mes', 'Manes.02G130600' => 'mes', 'Manes.03G180200' => 'mes', 'Manes.05G007000' => 'mes', 'Manes.08G084400' => 'mes', 'Manes.09G092600' => 'mes', 'Manes.15G027900' => 'mes', 'MBI04_g40948_MAGBIO' => 'mbi', 'MBI14_g12123_MAGBIO' => 'mbi', 'MBI18_g28915_MAGBIO' => 'mbi', 'MCO09G053' => 'mco', 'MCO11G782' => 'mco', 'MCO15G215' => 'mco', 'MD03G1088500' => 'mdo', 'MD03G1088600' => 'mdo', 'MD04G1130800' => 'mdo', 'MD09G1291700' => 'mdo', 'MD11G1097500' => 'mdo', 'MD11G1097600' => 'mdo', 'MD12G1143900' => 'mdo', 'MD13G1191400' => 'mdo', 'MD16G1191500' => 'mdo', 'Medtr1g085570' => 'mtr', 'Medtr1g104610' => 'mtr', 'Medtr2g097520' => 'mtr', 'Medtr4g021800' => 'mtr', 'Medtr4g021825' => 'mtr', 'Medtr4g064270' => 'mtr', 'Medtr4g064380' => 'mtr', 'Medtr7g062150' => 'mtr', 'MELO3C003138.2' => 'cme', 'MELO3C005187.2' => 'cme', 'MELO3C009252.2' => 'cme', 'MELO3C014481.2' => 'cme', 'MELO3C020616.2' => 'cme', 'MELO3C020617.2' => 'cme', 'MELO3C020618.2' => 'cme', 'Migut.G00328' => 'egut', 'Migut.J00320' => 'egut', 'Migut.L01000' => 'egut', 'Migut.L01953' => 'egut', 'MSTRG.10253' => 'ama', 'MSTRG.19077' => 'ama', 'MSTRG.26780' => 'ama', 'MSTRG.4023' => 'ama', 'MSTRG.5655' => 'ama', 'MSTRG.9992' => 'ama', 'Nitab4.5_0000043g0310' => 'nta', 'Nitab4.5_0000463g0080' => 'nta', 'Nitab4.5_0000705g0170' => 'nta', 'Nitab4.5_0001326g0060' => 'nta', 'Nitab4.5_0001628g0030' => 'nta', 'Nitab4.5_0002103g0110' => 'nta', 'Nitab4.5_0002946g0030' => 'nta', 'Nitab4.5_0004639g0030' => 'nta', 'Nn2g11149' => 'nnu', 'Nn2g13389' => 'nnu', 'Nn4g25326' => 'nnu', 'Nn4g26290' => 'nnu', 'Nn5g29865' => 'nnu', 'Oeu004163.1' => 'oeu', 'Oeu006901.1' => 'oeu', 'Oeu010096.1' => 'oeu', 'Oeu024340.1' => 'oeu', 'Oeu048369.1' => 'oeu', 'Os01g0973000' => 'osa', 'Os03g0273800' => 'osa', 'Os03g0701200' => 'osa', 'Os03g0834050' => 'osa', 'Os07g0634400' => 'osa', 'Peaxi162Scf00092g01414' => 'pax', 'Peaxi162Scf00165g00818' => 'pax', 'Peaxi162Scf00309g00516' => 'pax', 'Peaxi162Scf00774g00218' => 'pax', 'PGR004G1824' => 'pgr', 'PGR004G2606' => 'pgr', 'PGR031G2716' => 'pgr', 'PGR102G2460' => 'pgr', 'PGR142G2599' => 'pgr', 'PGSC0003DMG400000843' => 'stu', 'PGSC0003DMG400008829' => 'stu', 'PGSC0003DMG400030418' => 'stu', 'PGSC0003DMG400031834' => 'stu', 'PGSC0003DMG401028300' => 'stu', 'PGSC0003DMG402028300' => 'stu', 'Phvul.001G219300' => 'pvu', 'Phvul.007G056000' => 'pvu', 'Phvul.007G208000' => 'pvu', 'Phvul.008G119500' => 'pvu', 'Phvul.010G011200' => 'pvu', 'Phvul.010G014800' => 'pvu', 'Phvul.011G062900' => 'pvu', 'Phvul.L007043' => 'pvu', 'Potri.001G242300' => 'ptr', 'Potri.002G185300' => 'ptr', 'Potri.006G086900' => 'ptr', 'Potri.008G151700' => 'ptr', 'Potri.009G033500' => 'ptr', 'Potri.010G089300' => 'ptr', 'Potri.014G110800' => 'ptr', 'Pp3c27_8130' => 'ppa', 'Pp3c6_27410' => 'ppa', 'PRCOL_00001659' => 'pco', 'PRCOL_00001927' => 'pco', 'PRCOL_00003649' => 'pco', 'Prupe.1G011600' => 'ppe', 'Prupe.3G000800' => 'ppe', 'Prupe.3G001100' => 'ppe', 'Prupe.6G072700' => 'ppe', 'Prupe.6G072800' => 'ppe', 'Prupe.6G257300' => 'ppe', 'Prupe.8G033000' => 'ppe', 'Psat0s2633g0080' => 'psa', 'Psat0s3396g0080' => 'psa', 'Psat0s3396g0200' => 'psa', 'Psat3g139080' => 'psa', 'Psat5g285080' => 'psa', 'Psat6g157760' => 'psa', 'Psat6g208440' => 'psa', 'Psat7g215320' => 'psa', 'Psat7g215400' => 'psa', 'Psat7g235600' => 'psa', 'Psat7g235760' => 'psa', 'PSO063G4603' => 'pso', 'PSO210G0182' => 'pso', 'PSO210G0196' => 'pso', 'PSO339G0394' => 'pso', 'PSO339G4127' => 'pso', 'PSO513G0064' => 'pso', 'PSO761G0079' => 'pso', 'QL01p031003' => 'qlo', 'QL01p031078' => 'qlo', 'QL06p003004' => 'qlo', 'QL07p048731' => 'qlo', 'QL09p037427' => 'qlo', 'RcHm_v2.0_Chr3g0466361' => 'rch', 'RcHm_v2.0_Chr3g0485571' => 'rch', 'RcHm_v2.0_Chr4g0416551' => 'rch', 'RcHm_v2.0_Chr5g0065831' => 'rch', 'Rhsim01G0230500' => 'rsi', 'Rhsim05G0194000' => 'rsi', 'Rhsim08G0250400' => 'rsi', 'Sabra02G0131000' => 'sbr', 'Sabra06G0066300' => 'sbr', 'Sabra08G0115500' => 'sbr', 'Sabra09G0023900' => 'sbr', 'Sabra10G0054000' => 'sbr', 'Sabra14G0081500' => 'sbr', 'Sabra16G0147100' => 'sbr', 'SalBow2G2957' => 'sbo', 'SalBow4G3320' => 'sbo', 'SalBow8G1894' => 'sbo', 'Sc07g0007950' => 'sci', 'Sc12g0001360' => 'sci', 'Sc13g0004330' => 'sci', 'Sc20g0005010' => 'sci', 'Sed0000361' => 'sed', 'Sed0001706' => 'sed', 'Sed0002422' => 'sed', 'Sed0004029' => 'sed', 'Sed0004602' => 'sed', 'Sed0004943' => 'sed', 'Sed0008646' => 'sed', 'Sed0023313' => 'sed', 'Sed0024843' => 'sed', 'SEGI_00081' => 'sgi', 'SEGI_00947' => 'sgi', 'SEGI_04046' => 'sgi', 'SEGI_06880' => 'sgi', 'SEGI_09736' => 'sgi', 'SEGI_12741' => 'sgi', 'SEGI_14530' => 'sgi', 'SEGI_20705' => 'sgi', 'SEGI_26088' => 'sgi', 'SEGI_28323' => 'sgi', 'SEGI_33343' => 'sgi', 'SGA_v2.0_scaffold126G33775' => 'sas', 'SGA_v2.0_scaffold2G01337' => 'sas', 'SGA_v2.0_scaffold38G15006' => 'sas', 'SGA_v2.0_scaffold39G15264' => 'sas', 'SGA_v2.0_scaffold453G51880' => 'sas', 'SHI12696' => 'shi', 'SMO367G1096' => 'smo', 'Solyc01g068630.3' => 'sly', 'Solyc05g011880.3' => 'sly', 'Solyc06g076300.3' => 'sly', 'Solyc09g010940.4' => 'sly', 'Solyc09g075890.3' => 'sly', 'Sopen01g030560' => 'spe', 'Sopen05g006630' => 'spe', 'Sopen06g032720' => 'spe', 'Sopen09g005660' => 'spe', 'Sopen09g030690' => 'spe', 'Sp4g14540' => 'spa', 'Sp4g20030' => 'spa', 'Sp5g01320' => 'spa', 'Sp6g21170' => 'spa', 'Sp6g21180' => 'spa', 'Sp6g21190' => 'spa', 'Sp6g40220' => 'spa', 'TAR362G0122' => 'tar', 'TAR362G1338' => 'tar', 'TAR369G0590' => 'tar', 'TAR371G0824' => 'tar', 'TAR622G1429' => 'tar', 'TAR623G0734' => 'tar', 'TAR625G0441' => 'tar', 'TAR629G0976' => 'tar', 'TAR633G1195' => 'tar', 'TAR636G2660' => 'tar', 'THA.LOC104799440' => 'tha', 'THA.LOC104800966' => 'tha', 'THA.LOC104806559' => 'tha', 'THA.LOC104810765' => 'tha', 'THA.LOC104816266' => 'tha', 'THA.LOC104817419' => 'tha', 'THA.LOC104827021' => 'tha', 'Thecc.01G327400' => 'tca', 'Thecc.04G229200' => 'tca', 'Thecc.05G037400' => 'tca', 'Thecc.09G318600' => 'tca', 'Thecc.09G318700' => 'tca', 'Thhalv10006238m.g' => 'esa', 'Thhalv10014321m.g' => 'esa', 'Thhalv10014335m.g' => 'esa', 'Thhalv10015826m.g' => 'esa', 'Thhalv10017107m.g' => 'esa', 'Thhalv10017180m.g' => 'esa', 'Thhalv10029339m.g' => 'esa', 'TPR.G1699' => 'tpr', 'TPR.G23609' => 'tpr', 'TPR.G3081' => 'tpr', 'TPR.G40397' => 'tpr', 'TPR.G5522' => 'tpr', 'TPR.G5618' => 'tpr', 'TPR.G5626' => 'tpr', 'TWI09G1632' => 'twi', 'TWI23G1230' => 'twi', 'TWI53G1064' => 'twi', 'TWI59G0751' => 'twi', 'TWI74G0947' => 'twi', 'TWI77G0337' => 'twi', 'TWI79G1254' => 'twi', 'unitig_0.g2341' => 'ugi', 'unitig_26.g10006' => 'ugi', 'unitig_26.g10008' => 'ugi', 'unitig_26.g9192' => 'ugi', 'vmacro14547' => 'vma', 'vmacro15333' => 'vma', 'vmacro18743' => 'vma', 'vmacro20166' => 'vma', 'VMungo0331G0523' => 'vmu', 'VMungo0331G1202' => 'vmu', 'VMungo0720G1228' => 'vmu', 'VMungo0720G1514' => 'vmu', 'VMungo1080G0169' => 'vmu', 'VMungo1127G1475' => 'vmu', 'VMungo1383G1208' => 'vmu', 'VMungo1383G1698' => 'vmu', 'Zm00001eb012270' => 'zma', 'Zm00001eb054100' => 'zma', 'Zm00001eb063350' => 'zma', 'Zm00001eb328560' => 'zma', 'Zm00001eb342820' => 'zma', 'Zm00001eb362210' => 'zma', 'Zm00001eb397730' => 'zma', 'Zm00001eb399750' => 'zma' ) $gf_id = 'HOM05D000959' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000959' ) $data_identifier = 'HOM05D000959' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 5, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 5, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 10, 'mbi' => (int) 3, 'mco' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 2, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 3, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 11, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399750' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000959', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '622', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p07100' => 'bna', 'A03p11720' => 'bna', 'A05p08300' => 'bna', 'A05p13380' => 'bna', 'A09p54130' => 'bna', 'A10p16690' => 'bna', 'A10p16700' => 'bna', 'A10p33390' => 'bna', 'Aa31LG10G16020' => 'aar', 'Aa31LG1G11810' => 'aar', 'Aa31LG1G11830' => 'aar', 'Aa31LG1G22510' => 'aar', 'Aa31LG5G4890' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5793' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2310' => 'aag', 'Actinidia08499' => 'ach', 'Actinidia11262' => 'ach', 'Actinidia23926' => 'ach', 'Actinidia34420' => 'ach', 'Actinidia36970' => 'ach', 'Ah.02g111220' => 'amhyb', 'Ah.15g097750' => 'amhyb', 'AL4G27500' => 'aly', 'AL6G11470' => 'aly', 'AL8G35950' => 'aly', 'AL8G35960' => 'aly', 'AL8G35970' => 'aly', 'Aqoxy1G00912' => 'aox', 'Aqoxy2G02253' => 'aox', 'Aqoxy2G02411' => 'aox', 'Aqoxy5G00485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BZ66YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K8ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM4FUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6BF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HFV7XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25JBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0YNNV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MAKK6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P70IT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP2Z6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V61LZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YWP64R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3S9AI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7PGHH' => 'arhy', 'AT2G32150' => 'ath', 'AT3G62040' => 'ath', 'AT5G02230' => 'ath', 'AT5G59480' => 'ath', 'AT5G59490' => 'ath', 'ATR0332G060' => 'atr', 'ATR0559G190' => 'atr', 'ATR0693G294' => 'atr', 'Atru.chr3.3975' => 'acertr', 'Atru.chr3.3976' => 'acertr', 'Atru.chr3.3977' => 'acertr', 'Atru.chr4.2498' => 'acertr', 'Atru.chr5.838' => 'acertr', 'Atru.chr8.1990' => 'acertr', 'Atru.chr8.1991' => 'acertr', 'Atru.chr8.1992' => 'acertr', 'AUR62001759' => 'cqu', 'AUR62009545' => 'cqu', 'AUR62010474' => 'cqu', 'AUR62025820' => 'cqu', 'AUR62030422' => 'cqu', 'AUR62033605' => 'cqu', 'AUR62038615' => 'cqu', 'AUR62041347' => 'cqu', 'BcaB01g04574' => 'bca', 'BcaB02g09263' => 'bca', 'BcaB02g10453' => 'bca', 'BcaB05g22513' => 'bca', 'BcaB08g36253' => 'bca', 'BcaB08g36254' => 'bca', 'BcaC01g06519' => 'bca', 'BcaC02g11889' => 'bca', 'BcaC03g14010' => 'bca', 'BcaC03g18439' => 'bca', 'BcaC04g19765' => 'bca', 'BcaC09g48432' => 'bca', 'BcaNung07302' => 'bca', 'BolC2t06040H' => 'bol', 'BolC2t07346H' => 'bol', 'BolC3t13817H' => 'bol', 'BolC4t22625H' => 'bol', 'BolC4t23297H' => 'bol', 'BolC8t51278H' => 'bol', 'BolC9t58050H' => 'bol', 'BolC9t58051H' => 'bol', 'BolC9t60163H' => 'bol', 'BraA02t04712Z' => 'bra', 'BraA02t05791Z' => 'bra', 'BraA03t10483Z' => 'bra', 'BraA05t19795Z' => 'bra', 'BraA05t20276Z' => 'bra', 'BraA09t40827Z' => 'bra', 'BraA10t43750Z' => 'bra', 'BraA10t43751Z' => 'bra', 'BraA10t45370Z' => 'bra', 'C02p00400' => 'bna', 'C02p12460' => 'bna', 'C03p13680' => 'bna', 'C04p10270' => 'bna', 'C04p17500' => 'bna', 'C08p37010' => 'bna', 'C09p51880' => 'bna', 'C09p51890' => 'bna', 'C09p74300' => 'bna', 'CAN.G179.26' => 'can', 'CAN.G3384.1' => 'can', 'CAN.G394.68' => 'can', 'CAN.G907.13' => 'can', 'CANSAT11G0012' => 'cansat', 'CANSAT25G1586' => 'cansat', 'CANSAT35G0735' => 'cansat', 'CANSAT54G0556' => 'cansat', 'CANSAT64G0356' => 'cansat', 'CANSAT78G2042' => 'cansat', 'CARHR125920' => 'chi', 'CARHR131910' => 'chi', 'CARHR172390' => 'chi', 'CARHR211140' => 'chi', 'CARHR285850' => 'chi', 'CARHR285860' => 'chi', 'Carub.0004s1347' => 'cru', 'Carub.0004s1960' => 'cru', 'Carub.0005s2880' => 'cru', 'Carub.0006s0107' => 'cru', 'Carub.0008s2015' => 'cru', 'Carub.0008s2016' => 'cru', 'Carub.0008s2017' => 'cru', 'Ca_01315_v3' => 'car', 'Ca_05063_v3' => 'car', 'Ca_10231_v3' => 'car', 'Ca_10913_v3' => 'car', 'Ca_19156_v3' => 'car', 'Ca_23644_v3' => 'car', 'Ca_26735_v3' => 'car', 'Cc01_g13130' => 'ccan', 'Cc02_g21690' => 'ccan', 'Cc03_g03600' => 'ccan', 'Cc06_g02510' => 'ccan', 'CDE02G1265' => 'cde', 'CDE05G0415' => 'cde', 'CDE08G1082' => 'cde', 'Cfa005780' => 'cfa', 'Cfa011522' => 'cfa', 'Cfa011523' => 'cfa', 'Cfa015627' => 'cfa', 'Cfa017359' => 'cfa', 'Ciclev10005687m.g' => 'ccl', 'Ciclev10012173m.g' => 'ccl', 'Ciclev10021621m.g' => 'ccl', 'Ciclev10028968m.g' => 'ccl', 'Ciclev10029907m.g' => 'ccl', 'CiPaw.01G164800' => 'cil', 'CiPaw.07G083700' => 'cil', 'CiPaw.07G127000' => 'cil', 'CiPaw.07G136900' => 'cil', 'CiPaw.08G081700' => 'cil', 'CiPaw.09G194600' => 'cil', 'CiPaw.10G146500' => 'cil', 'CiPaw.13G091500' => 'cil', 'CiPaw.13G091600' => 'cil', 'ClCG00G003390' => 'cla', 'ClCG01G007220' => 'cla', 'ClCG03G001370' => 'cla', 'ClCG04G008100' => 'cla', 'ClCG06G006110' => 'cla', 'ClCG06G006130' => 'cla', 'ClCG10G021210' => 'cla', 'COL.COLO4_07648' => 'col', 'COL.COLO4_07650' => 'col', 'COL.COLO4_07651' => 'col', 'COL.COLO4_14780' => 'col', 'COL.COLO4_18546' => 'col', 'COL.COLO4_18547' => 'col', 'COL.COLO4_23103' => 'col', 'COL.COLO4_30419' => 'col', 'COL.COLO4_34232' => 'col', 'Cpa.g.sc169.20' => 'cpa', 'Cpa.g.sc57.45' => 'cpa', 'Cpa.g.sc58.124' => 'cpa', 'Cpa.g.sc58.125' => 'cpa', 'Cpa.g.sc81.118' => 'cpa', 'Cpa.g.sc81.119' => 'cpa', 'Cre12.g524700' => 'cre', 'CsaV3_1G034430' => 'csa', 'CsaV3_1G034440' => 'csa', 'CsaV3_1G034450' => 'csa', 'CsaV3_3G034830' => 'csa', 'CsaV3_4G025090' => 'csa', 'CsaV3_5G018660' => 'csa', 'CsaV3_6G038160' => 'csa', 'CSS0003447' => 'camsi', 'CSS0017840' => 'camsi', 'CSS0019260' => 'camsi', 'CSS0040375' => 'camsi', 'CSS0042533' => 'camsi', 'DCAR_005960' => 'dca', 'DCAR_012104' => 'dca', 'DCAR_012105' => 'dca', 'DCAR_012293' => 'dca', 'DCAR_015632' => 'dca', 'DCAR_024602' => 'dca', 'DCAR_028752' => 'dca', 'Dinv06261' => 'din', 'Dinv13982' => 'din', 'Dinv17029' => 'din', 'Dinv18463' => 'din', 'Dinv33181' => 'din', 'Dinv35585' => 'din', 'Dinv37161' => 'din', 'Dinv42977' => 'din', 'Dinv43122' => 'din', 'Dinv44517' => 'din', 'Duzib093G0256' => 'dzi', 'Duzib106G1254' => 'dzi', 'Duzib128G1789' => 'dzi', 'Duzib133G0633' => 'dzi', 'Duzib138G0510' => 'dzi', 'Duzib150G1084' => 'dzi', 'Duzib168G0488' => 'dzi', 'Duzib168G1523' => 'dzi', 'Duzib170G0133' => 'dzi', 'ECA234G1433' => 'eca', 'ECA236G1432' => 'eca', 'ECA236G2256' => 'eca', 'ECA236G2365' => 'eca', 'ECA236G4830' => 'eca', 'ECA248G1505' => 'eca', 'EL10Ac3g06431' => 'bvu', 'EL10Ac5g12577' => 'bvu', 'EL10Ac6g13533' => 'bvu', 'EL10Ac7g16045' => 'bvu', 'Eucgr.A01281' => 'egr', 'Eucgr.B02326' => 'egr', 'Eucgr.H03532' => 'egr', 'Eucgr.K00553' => 'egr', 'Eucgr.K03116' => 'egr', 'FAN02G3963' => 'fan', 'FAN05G0438' => 'fan', 'FAN09G2434' => 'fan', 'FAN12G3984' => 'fan', 'FAN14G0798' => 'fan', 'FAN17G0652' => 'fan', 'FAN19G1988' => 'fan', 'FAN22G0632' => 'fan', 'FAN23G0387' => 'fan', 'FAN26G1323' => 'fan', 'FAN28G0666' => 'fan', 'FvH4_1g26080' => 'fve', 'FvH4_3g36780' => 'fve', 'FvH4_4g15270' => 'fve', 'FvH4_6g13490' => 'fve', 'Glyma.01G098700' => 'gma', 'Glyma.03G065900' => 'gma', 'Glyma.03G073754' => 'gma', 'Glyma.03G073758' => 'gma', 'Glyma.03G083200' => 'gma', 'Glyma.03G225500' => 'gma', 'Glyma.05G037766' => 'gma', 'Glyma.07G133500' => 'gma', 'Glyma.10G139400' => 'gma', 'Glyma.10G248900' => 'gma', 'Glyma.11G137800' => 'gma', 'Glyma.12G061300' => 'gma', 'Glyma.13G337900' => 'gma', 'Glyma.15G036600' => 'gma', 'Glyma.18G182800' => 'gma', 'Glyma.19G222500' => 'gma', 'Glyma.20G144800' => 'gma', 'Gohir.A01G222000' => 'ghi', 'Gohir.A03G044000' => 'ghi', 'Gohir.A03G044100' => 'ghi', 'Gohir.A04G083100' => 'ghi', 'Gohir.A07G127200' => 'ghi', 'Gohir.A07G132400' => 'ghi', 'Gohir.A08G000700' => 'ghi', 'Gohir.A11G327300' => 'ghi', 'Gohir.D01G211500' => 'ghi', 'Gohir.D03G123400' => 'ghi', 'Gohir.D03G123500' => 'ghi', 'Gohir.D04G121800' => 'ghi', 'Gohir.D07G131500' => 'ghi', 'Gohir.D07G136600' => 'ghi', 'Gohir.D08G011600' => 'ghi', 'Gohir.D11G346200' => 'ghi', 'Gorai.001G142800' => 'gra', 'Gorai.001G148700' => 'gra', 'Gorai.002G257300' => 'gra', 'Gorai.003G130000' => 'gra', 'Gorai.003G130100' => 'gra', 'Gorai.004G005300' => 'gra', 'Gorai.007G376500' => 'gra', 'Gorai.012G104700' => 'gra', 'GSVIVG01017946001' => 'vvi', 'GSVIVG01024928001' => 'vvi', 'GSVIVG01028227001' => 'vvi', 'GSVIVG01034151001' => 'vvi', 'HanXRQChr05g0135031' => 'han', 'HanXRQChr05g0135041' => 'han', 'HanXRQChr05g0140021' => 'han', 'HanXRQChr06g0178981' => 'han', 'HanXRQChr07g0188251' => 'han', 'HanXRQChr08g0235311' => 'han', 'HanXRQChr09g0271011' => 'han', 'HanXRQChr10g0293321' => 'han', 'HanXRQChr13g0388171' => 'han', 'Haze_00916' => 'cav', 'Haze_05063' => 'cav', 'Haze_20814' => 'cav', 'Haze_24128' => 'cav', 'Hma1.2p1_0745F.1_g212010' => 'hma', 'Hma1.2p1_0757F.1_g213260' => 'hma', 'Hma1.2p1_0936F.1_g238840' => 'hma', 'Hma1.2p1_1735F.1_g299890' => 'hma', 'Hma1.2p1_1861F.1_g305685' => 'hma', 'HPP92_003397' => 'vpl', 'HPP92_012597' => 'vpl', 'HPP92_015520' => 'vpl', 'HPP92_015539' => 'vpl', 'HPP92_020373' => 'vpl', 'Hund04938' => 'sun', 'Hund10677' => 'sun', 'Hund11033' => 'sun', 'Hund12155' => 'sun', 'Lalb_Chr01g0022551' => 'lal', 'Lalb_Chr03g0042341' => 'lal', 'Lalb_Chr07g0192931' => 'lal', 'Lalb_Chr12g0209551' => 'lal', 'Lalb_Chr19g0125251' => 'lal', 'Lalb_Chr19g0137891' => 'lal', 'Lalb_Chr21g0304641' => 'lal', 'Lalb_Chr21g0309881' => 'lal', 'Lj1A5T12' => 'lonja', 'Lj1C148G10' => 'lonja', 'Lj2A93T83' => 'lonja', 'Lj3A738G68' => 'lonja', 'Lj3C966T1' => 'lonja', 'Lj3g0018958' => 'lja', 'Lj3g0021831' => 'lja', 'Lj3g0025443' => 'lja', 'Lj4g0026809' => 'lja', 'Lj5g0012558' => 'lja', 'Lj5g0021586' => 'lja', 'Lsat_1_v5_gn_5_156840' => 'lsa', 'Lsat_1_v5_gn_8_73460' => 'lsa', 'Lsat_1_v5_gn_8_73481' => 'lsa', 'Lsat_1_v5_gn_9_31601' => 'lsa', 'Lsat_1_v5_gn_9_77320' => 'lsa', 'Manes.01G171300' => 'mes', 'Manes.01G171400' => 'mes', 'Manes.01G236100' => 'mes', 'Manes.02G130500' => 'mes', 'Manes.02G130600' => 'mes', 'Manes.03G180200' => 'mes', 'Manes.05G007000' => 'mes', 'Manes.08G084400' => 'mes', 'Manes.09G092600' => 'mes', 'Manes.15G027900' => 'mes', 'MBI04_g40948_MAGBIO' => 'mbi', 'MBI14_g12123_MAGBIO' => 'mbi', 'MBI18_g28915_MAGBIO' => 'mbi', 'MCO09G053' => 'mco', 'MCO11G782' => 'mco', 'MCO15G215' => 'mco', 'MD03G1088500' => 'mdo', 'MD03G1088600' => 'mdo', 'MD04G1130800' => 'mdo', 'MD09G1291700' => 'mdo', 'MD11G1097500' => 'mdo', 'MD11G1097600' => 'mdo', 'MD12G1143900' => 'mdo', 'MD13G1191400' => 'mdo', 'MD16G1191500' => 'mdo', 'Medtr1g085570' => 'mtr', 'Medtr1g104610' => 'mtr', 'Medtr2g097520' => 'mtr', 'Medtr4g021800' => 'mtr', 'Medtr4g021825' => 'mtr', 'Medtr4g064270' => 'mtr', 'Medtr4g064380' => 'mtr', 'Medtr7g062150' => 'mtr', 'MELO3C003138.2' => 'cme', 'MELO3C005187.2' => 'cme', 'MELO3C009252.2' => 'cme', 'MELO3C014481.2' => 'cme', 'MELO3C020616.2' => 'cme', 'MELO3C020617.2' => 'cme', 'MELO3C020618.2' => 'cme', 'Migut.G00328' => 'egut', 'Migut.J00320' => 'egut', 'Migut.L01000' => 'egut', 'Migut.L01953' => 'egut', 'MSTRG.10253' => 'ama', 'MSTRG.19077' => 'ama', 'MSTRG.26780' => 'ama', 'MSTRG.4023' => 'ama', 'MSTRG.5655' => 'ama', 'MSTRG.9992' => 'ama', 'Nitab4.5_0000043g0310' => 'nta', 'Nitab4.5_0000463g0080' => 'nta', 'Nitab4.5_0000705g0170' => 'nta', 'Nitab4.5_0001326g0060' => 'nta', 'Nitab4.5_0001628g0030' => 'nta', 'Nitab4.5_0002103g0110' => 'nta', 'Nitab4.5_0002946g0030' => 'nta', 'Nitab4.5_0004639g0030' => 'nta', 'Nn2g11149' => 'nnu', 'Nn2g13389' => 'nnu', 'Nn4g25326' => 'nnu', 'Nn4g26290' => 'nnu', 'Nn5g29865' => 'nnu', 'Oeu004163.1' => 'oeu', 'Oeu006901.1' => 'oeu', 'Oeu010096.1' => 'oeu', 'Oeu024340.1' => 'oeu', 'Oeu048369.1' => 'oeu', 'Os01g0973000' => 'osa', 'Os03g0273800' => 'osa', 'Os03g0701200' => 'osa', 'Os03g0834050' => 'osa', 'Os07g0634400' => 'osa', 'Peaxi162Scf00092g01414' => 'pax', 'Peaxi162Scf00165g00818' => 'pax', 'Peaxi162Scf00309g00516' => 'pax', 'Peaxi162Scf00774g00218' => 'pax', 'PGR004G1824' => 'pgr', 'PGR004G2606' => 'pgr', 'PGR031G2716' => 'pgr', 'PGR102G2460' => 'pgr', 'PGR142G2599' => 'pgr', 'PGSC0003DMG400000843' => 'stu', 'PGSC0003DMG400008829' => 'stu', 'PGSC0003DMG400030418' => 'stu', 'PGSC0003DMG400031834' => 'stu', 'PGSC0003DMG401028300' => 'stu', 'PGSC0003DMG402028300' => 'stu', 'Phvul.001G219300' => 'pvu', 'Phvul.007G056000' => 'pvu', 'Phvul.007G208000' => 'pvu', 'Phvul.008G119500' => 'pvu', 'Phvul.010G011200' => 'pvu', 'Phvul.010G014800' => 'pvu', 'Phvul.011G062900' => 'pvu', 'Phvul.L007043' => 'pvu', 'Potri.001G242300' => 'ptr', 'Potri.002G185300' => 'ptr', 'Potri.006G086900' => 'ptr', 'Potri.008G151700' => 'ptr', 'Potri.009G033500' => 'ptr', 'Potri.010G089300' => 'ptr', 'Potri.014G110800' => 'ptr', 'Pp3c27_8130' => 'ppa', 'Pp3c6_27410' => 'ppa', 'PRCOL_00001659' => 'pco', 'PRCOL_00001927' => 'pco', 'PRCOL_00003649' => 'pco', 'Prupe.1G011600' => 'ppe', 'Prupe.3G000800' => 'ppe', 'Prupe.3G001100' => 'ppe', 'Prupe.6G072700' => 'ppe', 'Prupe.6G072800' => 'ppe', 'Prupe.6G257300' => 'ppe', 'Prupe.8G033000' => 'ppe', 'Psat0s2633g0080' => 'psa', 'Psat0s3396g0080' => 'psa', 'Psat0s3396g0200' => 'psa', 'Psat3g139080' => 'psa', 'Psat5g285080' => 'psa', 'Psat6g157760' => 'psa', 'Psat6g208440' => 'psa', 'Psat7g215320' => 'psa', 'Psat7g215400' => 'psa', 'Psat7g235600' => 'psa', 'Psat7g235760' => 'psa', 'PSO063G4603' => 'pso', 'PSO210G0182' => 'pso', 'PSO210G0196' => 'pso', 'PSO339G0394' => 'pso', 'PSO339G4127' => 'pso', 'PSO513G0064' => 'pso', 'PSO761G0079' => 'pso', 'QL01p031003' => 'qlo', 'QL01p031078' => 'qlo', 'QL06p003004' => 'qlo', 'QL07p048731' => 'qlo', 'QL09p037427' => 'qlo', 'RcHm_v2.0_Chr3g0466361' => 'rch', 'RcHm_v2.0_Chr3g0485571' => 'rch', 'RcHm_v2.0_Chr4g0416551' => 'rch', 'RcHm_v2.0_Chr5g0065831' => 'rch', 'Rhsim01G0230500' => 'rsi', 'Rhsim05G0194000' => 'rsi', 'Rhsim08G0250400' => 'rsi', 'Sabra02G0131000' => 'sbr', 'Sabra06G0066300' => 'sbr', 'Sabra08G0115500' => 'sbr', 'Sabra09G0023900' => 'sbr', 'Sabra10G0054000' => 'sbr', 'Sabra14G0081500' => 'sbr', 'Sabra16G0147100' => 'sbr', 'SalBow2G2957' => 'sbo', 'SalBow4G3320' => 'sbo', 'SalBow8G1894' => 'sbo', 'Sc07g0007950' => 'sci', 'Sc12g0001360' => 'sci', 'Sc13g0004330' => 'sci', 'Sc20g0005010' => 'sci', 'Sed0000361' => 'sed', 'Sed0001706' => 'sed', 'Sed0002422' => 'sed', 'Sed0004029' => 'sed', 'Sed0004602' => 'sed', 'Sed0004943' => 'sed', 'Sed0008646' => 'sed', 'Sed0023313' => 'sed', 'Sed0024843' => 'sed', 'SEGI_00081' => 'sgi', 'SEGI_00947' => 'sgi', 'SEGI_04046' => 'sgi', 'SEGI_06880' => 'sgi', 'SEGI_09736' => 'sgi', 'SEGI_12741' => 'sgi', 'SEGI_14530' => 'sgi', 'SEGI_20705' => 'sgi', 'SEGI_26088' => 'sgi', 'SEGI_28323' => 'sgi', 'SEGI_33343' => 'sgi', 'SGA_v2.0_scaffold126G33775' => 'sas', 'SGA_v2.0_scaffold2G01337' => 'sas', 'SGA_v2.0_scaffold38G15006' => 'sas', 'SGA_v2.0_scaffold39G15264' => 'sas', 'SGA_v2.0_scaffold453G51880' => 'sas', 'SHI12696' => 'shi', 'SMO367G1096' => 'smo', 'Solyc01g068630.3' => 'sly', 'Solyc05g011880.3' => 'sly', 'Solyc06g076300.3' => 'sly', 'Solyc09g010940.4' => 'sly', 'Solyc09g075890.3' => 'sly', 'Sopen01g030560' => 'spe', 'Sopen05g006630' => 'spe', 'Sopen06g032720' => 'spe', 'Sopen09g005660' => 'spe', 'Sopen09g030690' => 'spe', 'Sp4g14540' => 'spa', 'Sp4g20030' => 'spa', 'Sp5g01320' => 'spa', 'Sp6g21170' => 'spa', 'Sp6g21180' => 'spa', 'Sp6g21190' => 'spa', 'Sp6g40220' => 'spa', 'TAR362G0122' => 'tar', 'TAR362G1338' => 'tar', 'TAR369G0590' => 'tar', 'TAR371G0824' => 'tar', 'TAR622G1429' => 'tar', 'TAR623G0734' => 'tar', 'TAR625G0441' => 'tar', 'TAR629G0976' => 'tar', 'TAR633G1195' => 'tar', 'TAR636G2660' => 'tar', 'THA.LOC104799440' => 'tha', 'THA.LOC104800966' => 'tha', 'THA.LOC104806559' => 'tha', 'THA.LOC104810765' => 'tha', 'THA.LOC104816266' => 'tha', 'THA.LOC104817419' => 'tha', 'THA.LOC104827021' => 'tha', 'Thecc.01G327400' => 'tca', 'Thecc.04G229200' => 'tca', 'Thecc.05G037400' => 'tca', 'Thecc.09G318600' => 'tca', 'Thecc.09G318700' => 'tca', 'Thhalv10006238m.g' => 'esa', 'Thhalv10014321m.g' => 'esa', 'Thhalv10014335m.g' => 'esa', 'Thhalv10015826m.g' => 'esa', 'Thhalv10017107m.g' => 'esa', 'Thhalv10017180m.g' => 'esa', 'Thhalv10029339m.g' => 'esa', 'TPR.G1699' => 'tpr', 'TPR.G23609' => 'tpr', 'TPR.G3081' => 'tpr', 'TPR.G40397' => 'tpr', 'TPR.G5522' => 'tpr', 'TPR.G5618' => 'tpr', 'TPR.G5626' => 'tpr', 'TWI09G1632' => 'twi', 'TWI23G1230' => 'twi', 'TWI53G1064' => 'twi', 'TWI59G0751' => 'twi', 'TWI74G0947' => 'twi', 'TWI77G0337' => 'twi', 'TWI79G1254' => 'twi', 'unitig_0.g2341' => 'ugi', 'unitig_26.g10006' => 'ugi', 'unitig_26.g10008' => 'ugi', 'unitig_26.g9192' => 'ugi', 'vmacro14547' => 'vma', 'vmacro15333' => 'vma', 'vmacro18743' => 'vma', 'vmacro20166' => 'vma', 'VMungo0331G0523' => 'vmu', 'VMungo0331G1202' => 'vmu', 'VMungo0720G1228' => 'vmu', 'VMungo0720G1514' => 'vmu', 'VMungo1080G0169' => 'vmu', 'VMungo1127G1475' => 'vmu', 'VMungo1383G1208' => 'vmu', 'VMungo1383G1698' => 'vmu', 'Zm00001eb012270' => 'zma', 'Zm00001eb054100' => 'zma', 'Zm00001eb063350' => 'zma', 'Zm00001eb328560' => 'zma', 'Zm00001eb342820' => 'zma', 'Zm00001eb362210' => 'zma', 'Zm00001eb397730' => 'zma', 'Zm00001eb399750' => 'zma' ), 'gf_id' => 'HOM05D000959', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000959' ), 'data_identifier' => 'HOM05D000959', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000959', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '622', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p07100' => 'bna', 'A03p11720' => 'bna', 'A05p08300' => 'bna', 'A05p13380' => 'bna', 'A09p54130' => 'bna', 'A10p16690' => 'bna', 'A10p16700' => 'bna', 'A10p33390' => 'bna', 'Aa31LG10G16020' => 'aar', 'Aa31LG1G11810' => 'aar', 'Aa31LG1G11830' => 'aar', 'Aa31LG1G22510' => 'aar', 'Aa31LG5G4890' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5793' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2310' => 'aag', 'Actinidia08499' => 'ach', 'Actinidia11262' => 'ach', 'Actinidia23926' => 'ach', 'Actinidia34420' => 'ach', 'Actinidia36970' => 'ach', 'Ah.02g111220' => 'amhyb', 'Ah.15g097750' => 'amhyb', 'AL4G27500' => 'aly', 'AL6G11470' => 'aly', 'AL8G35950' => 'aly', 'AL8G35960' => 'aly', 'AL8G35970' => 'aly', 'Aqoxy1G00912' => 'aox', 'Aqoxy2G02253' => 'aox', 'Aqoxy2G02411' => 'aox', 'Aqoxy5G00485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BZ66YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K8ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM4FUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6BF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HFV7XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25JBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0YNNV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MAKK6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P70IT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP2Z6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V61LZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YWP64R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3S9AI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7PGHH' => 'arhy', 'AT2G32150' => 'ath', 'AT3G62040' => 'ath', 'AT5G02230' => 'ath', 'AT5G59480' => 'ath', 'AT5G59490' => 'ath', 'ATR0332G060' => 'atr', 'ATR0559G190' => 'atr', 'ATR0693G294' => 'atr', 'Atru.chr3.3975' => 'acertr', 'Atru.chr3.3976' => 'acertr', 'Atru.chr3.3977' => 'acertr', 'Atru.chr4.2498' => 'acertr', 'Atru.chr5.838' => 'acertr', 'Atru.chr8.1990' => 'acertr', 'Atru.chr8.1991' => 'acertr', 'Atru.chr8.1992' => 'acertr', 'AUR62001759' => 'cqu', 'AUR62009545' => 'cqu', 'AUR62010474' => 'cqu', 'AUR62025820' => 'cqu', 'AUR62030422' => 'cqu', 'AUR62033605' => 'cqu', 'AUR62038615' => 'cqu', 'AUR62041347' => 'cqu', 'BcaB01g04574' => 'bca', 'BcaB02g09263' => 'bca', 'BcaB02g10453' => 'bca', 'BcaB05g22513' => 'bca', 'BcaB08g36253' => 'bca', 'BcaB08g36254' => 'bca', 'BcaC01g06519' => 'bca', 'BcaC02g11889' => 'bca', 'BcaC03g14010' => 'bca', 'BcaC03g18439' => 'bca', 'BcaC04g19765' => 'bca', 'BcaC09g48432' => 'bca', 'BcaNung07302' => 'bca', 'BolC2t06040H' => 'bol', 'BolC2t07346H' => 'bol', 'BolC3t13817H' => 'bol', 'BolC4t22625H' => 'bol', 'BolC4t23297H' => 'bol', 'BolC8t51278H' => 'bol', 'BolC9t58050H' => 'bol', 'BolC9t58051H' => 'bol', 'BolC9t60163H' => 'bol', 'BraA02t04712Z' => 'bra', 'BraA02t05791Z' => 'bra', 'BraA03t10483Z' => 'bra', 'BraA05t19795Z' => 'bra', 'BraA05t20276Z' => 'bra', 'BraA09t40827Z' => 'bra', 'BraA10t43750Z' => 'bra', 'BraA10t43751Z' => 'bra', 'BraA10t45370Z' => 'bra', 'C02p00400' => 'bna', 'C02p12460' => 'bna', 'C03p13680' => 'bna', 'C04p10270' => 'bna', 'C04p17500' => 'bna', 'C08p37010' => 'bna', 'C09p51880' => 'bna', 'C09p51890' => 'bna', 'C09p74300' => 'bna', 'CAN.G179.26' => 'can', 'CAN.G3384.1' => 'can', 'CAN.G394.68' => 'can', 'CAN.G907.13' => 'can', 'CANSAT11G0012' => 'cansat', 'CANSAT25G1586' => 'cansat', 'CANSAT35G0735' => 'cansat', 'CANSAT54G0556' => 'cansat', 'CANSAT64G0356' => 'cansat', 'CANSAT78G2042' => 'cansat', 'CARHR125920' => 'chi', 'CARHR131910' => 'chi', 'CARHR172390' => 'chi', 'CARHR211140' => 'chi', 'CARHR285850' => 'chi', 'CARHR285860' => 'chi', 'Carub.0004s1347' => 'cru', 'Carub.0004s1960' => 'cru', 'Carub.0005s2880' => 'cru', 'Carub.0006s0107' => 'cru', 'Carub.0008s2015' => 'cru', 'Carub.0008s2016' => 'cru', 'Carub.0008s2017' => 'cru', 'Ca_01315_v3' => 'car', 'Ca_05063_v3' => 'car', 'Ca_10231_v3' => 'car', 'Ca_10913_v3' => 'car', 'Ca_19156_v3' => 'car', 'Ca_23644_v3' => 'car', 'Ca_26735_v3' => 'car', 'Cc01_g13130' => 'ccan', 'Cc02_g21690' => 'ccan', 'Cc03_g03600' => 'ccan', 'Cc06_g02510' => 'ccan', 'CDE02G1265' => 'cde', 'CDE05G0415' => 'cde', 'CDE08G1082' => 'cde', 'Cfa005780' => 'cfa', 'Cfa011522' => 'cfa', 'Cfa011523' => 'cfa', 'Cfa015627' => 'cfa', 'Cfa017359' => 'cfa', 'Ciclev10005687m.g' => 'ccl', 'Ciclev10012173m.g' => 'ccl', 'Ciclev10021621m.g' => 'ccl', 'Ciclev10028968m.g' => 'ccl', 'Ciclev10029907m.g' => 'ccl', 'CiPaw.01G164800' => 'cil', 'CiPaw.07G083700' => 'cil', 'CiPaw.07G127000' => 'cil', 'CiPaw.07G136900' => 'cil', 'CiPaw.08G081700' => 'cil', 'CiPaw.09G194600' => 'cil', 'CiPaw.10G146500' => 'cil', 'CiPaw.13G091500' => 'cil', 'CiPaw.13G091600' => 'cil', 'ClCG00G003390' => 'cla', 'ClCG01G007220' => 'cla', 'ClCG03G001370' => 'cla', 'ClCG04G008100' => 'cla', 'ClCG06G006110' => 'cla', 'ClCG06G006130' => 'cla', 'ClCG10G021210' => 'cla', 'COL.COLO4_07648' => 'col', 'COL.COLO4_07650' => 'col', 'COL.COLO4_07651' => 'col', 'COL.COLO4_14780' => 'col', 'COL.COLO4_18546' => 'col', 'COL.COLO4_18547' => 'col', 'COL.COLO4_23103' => 'col', 'COL.COLO4_30419' => 'col', 'COL.COLO4_34232' => 'col', 'Cpa.g.sc169.20' => 'cpa', 'Cpa.g.sc57.45' => 'cpa', 'Cpa.g.sc58.124' => 'cpa', 'Cpa.g.sc58.125' => 'cpa', 'Cpa.g.sc81.118' => 'cpa', 'Cpa.g.sc81.119' => 'cpa', 'Cre12.g524700' => 'cre', 'CsaV3_1G034430' => 'csa', 'CsaV3_1G034440' => 'csa', 'CsaV3_1G034450' => 'csa', 'CsaV3_3G034830' => 'csa', 'CsaV3_4G025090' => 'csa', 'CsaV3_5G018660' => 'csa', 'CsaV3_6G038160' => 'csa', 'CSS0003447' => 'camsi', 'CSS0017840' => 'camsi', 'CSS0019260' => 'camsi', 'CSS0040375' => 'camsi', 'CSS0042533' => 'camsi', 'DCAR_005960' => 'dca', 'DCAR_012104' => 'dca', 'DCAR_012105' => 'dca', 'DCAR_012293' => 'dca', 'DCAR_015632' => 'dca', 'DCAR_024602' => 'dca', 'DCAR_028752' => 'dca', 'Dinv06261' => 'din', 'Dinv13982' => 'din', 'Dinv17029' => 'din', 'Dinv18463' => 'din', 'Dinv33181' => 'din', 'Dinv35585' => 'din', 'Dinv37161' => 'din', 'Dinv42977' => 'din', 'Dinv43122' => 'din', 'Dinv44517' => 'din', 'Duzib093G0256' => 'dzi', 'Duzib106G1254' => 'dzi', 'Duzib128G1789' => 'dzi', 'Duzib133G0633' => 'dzi', 'Duzib138G0510' => 'dzi', 'Duzib150G1084' => 'dzi', 'Duzib168G0488' => 'dzi', 'Duzib168G1523' => 'dzi', 'Duzib170G0133' => 'dzi', 'ECA234G1433' => 'eca', 'ECA236G1432' => 'eca', 'ECA236G2256' => 'eca', 'ECA236G2365' => 'eca', 'ECA236G4830' => 'eca', 'ECA248G1505' => 'eca', 'EL10Ac3g06431' => 'bvu', 'EL10Ac5g12577' => 'bvu', 'EL10Ac6g13533' => 'bvu', 'EL10Ac7g16045' => 'bvu', 'Eucgr.A01281' => 'egr', 'Eucgr.B02326' => 'egr', 'Eucgr.H03532' => 'egr', 'Eucgr.K00553' => 'egr', 'Eucgr.K03116' => 'egr', 'FAN02G3963' => 'fan', 'FAN05G0438' => 'fan', 'FAN09G2434' => 'fan', 'FAN12G3984' => 'fan', 'FAN14G0798' => 'fan', 'FAN17G0652' => 'fan', 'FAN19G1988' => 'fan', 'FAN22G0632' => 'fan', 'FAN23G0387' => 'fan', 'FAN26G1323' => 'fan', 'FAN28G0666' => 'fan', 'FvH4_1g26080' => 'fve', 'FvH4_3g36780' => 'fve', 'FvH4_4g15270' => 'fve', 'FvH4_6g13490' => 'fve', 'Glyma.01G098700' => 'gma', 'Glyma.03G065900' => 'gma', 'Glyma.03G073754' => 'gma', 'Glyma.03G073758' => 'gma', 'Glyma.03G083200' => 'gma', 'Glyma.03G225500' => 'gma', 'Glyma.05G037766' => 'gma', 'Glyma.07G133500' => 'gma', 'Glyma.10G139400' => 'gma', 'Glyma.10G248900' => 'gma', 'Glyma.11G137800' => 'gma', 'Glyma.12G061300' => 'gma', 'Glyma.13G337900' => 'gma', 'Glyma.15G036600' => 'gma', 'Glyma.18G182800' => 'gma', 'Glyma.19G222500' => 'gma', 'Glyma.20G144800' => 'gma', 'Gohir.A01G222000' => 'ghi', 'Gohir.A03G044000' => 'ghi', 'Gohir.A03G044100' => 'ghi', 'Gohir.A04G083100' => 'ghi', 'Gohir.A07G127200' => 'ghi', 'Gohir.A07G132400' => 'ghi', 'Gohir.A08G000700' => 'ghi', 'Gohir.A11G327300' => 'ghi', 'Gohir.D01G211500' => 'ghi', 'Gohir.D03G123400' => 'ghi', 'Gohir.D03G123500' => 'ghi', 'Gohir.D04G121800' => 'ghi', 'Gohir.D07G131500' => 'ghi', 'Gohir.D07G136600' => 'ghi', 'Gohir.D08G011600' => 'ghi', 'Gohir.D11G346200' => 'ghi', 'Gorai.001G142800' => 'gra', 'Gorai.001G148700' => 'gra', 'Gorai.002G257300' => 'gra', 'Gorai.003G130000' => 'gra', 'Gorai.003G130100' => 'gra', 'Gorai.004G005300' => 'gra', 'Gorai.007G376500' => 'gra', 'Gorai.012G104700' => 'gra', 'GSVIVG01017946001' => 'vvi', 'GSVIVG01024928001' => 'vvi', 'GSVIVG01028227001' => 'vvi', 'GSVIVG01034151001' => 'vvi', 'HanXRQChr05g0135031' => 'han', 'HanXRQChr05g0135041' => 'han', 'HanXRQChr05g0140021' => 'han', 'HanXRQChr06g0178981' => 'han', 'HanXRQChr07g0188251' => 'han', 'HanXRQChr08g0235311' => 'han', 'HanXRQChr09g0271011' => 'han', 'HanXRQChr10g0293321' => 'han', 'HanXRQChr13g0388171' => 'han', 'Haze_00916' => 'cav', 'Haze_05063' => 'cav', 'Haze_20814' => 'cav', 'Haze_24128' => 'cav', 'Hma1.2p1_0745F.1_g212010' => 'hma', 'Hma1.2p1_0757F.1_g213260' => 'hma', 'Hma1.2p1_0936F.1_g238840' => 'hma', 'Hma1.2p1_1735F.1_g299890' => 'hma', 'Hma1.2p1_1861F.1_g305685' => 'hma', 'HPP92_003397' => 'vpl', 'HPP92_012597' => 'vpl', 'HPP92_015520' => 'vpl', 'HPP92_015539' => 'vpl', 'HPP92_020373' => 'vpl', 'Hund04938' => 'sun', 'Hund10677' => 'sun', 'Hund11033' => 'sun', 'Hund12155' => 'sun', 'Lalb_Chr01g0022551' => 'lal', 'Lalb_Chr03g0042341' => 'lal', 'Lalb_Chr07g0192931' => 'lal', 'Lalb_Chr12g0209551' => 'lal', 'Lalb_Chr19g0125251' => 'lal', 'Lalb_Chr19g0137891' => 'lal', 'Lalb_Chr21g0304641' => 'lal', 'Lalb_Chr21g0309881' => 'lal', 'Lj1A5T12' => 'lonja', 'Lj1C148G10' => 'lonja', 'Lj2A93T83' => 'lonja', 'Lj3A738G68' => 'lonja', 'Lj3C966T1' => 'lonja', 'Lj3g0018958' => 'lja', 'Lj3g0021831' => 'lja', 'Lj3g0025443' => 'lja', 'Lj4g0026809' => 'lja', 'Lj5g0012558' => 'lja', 'Lj5g0021586' => 'lja', 'Lsat_1_v5_gn_5_156840' => 'lsa', 'Lsat_1_v5_gn_8_73460' => 'lsa', 'Lsat_1_v5_gn_8_73481' => 'lsa', 'Lsat_1_v5_gn_9_31601' => 'lsa', 'Lsat_1_v5_gn_9_77320' => 'lsa', 'Manes.01G171300' => 'mes', 'Manes.01G171400' => 'mes', 'Manes.01G236100' => 'mes', 'Manes.02G130500' => 'mes', 'Manes.02G130600' => 'mes', 'Manes.03G180200' => 'mes', 'Manes.05G007000' => 'mes', 'Manes.08G084400' => 'mes', 'Manes.09G092600' => 'mes', 'Manes.15G027900' => 'mes', 'MBI04_g40948_MAGBIO' => 'mbi', 'MBI14_g12123_MAGBIO' => 'mbi', 'MBI18_g28915_MAGBIO' => 'mbi', 'MCO09G053' => 'mco', 'MCO11G782' => 'mco', 'MCO15G215' => 'mco', 'MD03G1088500' => 'mdo', 'MD03G1088600' => 'mdo', 'MD04G1130800' => 'mdo', 'MD09G1291700' => 'mdo', 'MD11G1097500' => 'mdo', 'MD11G1097600' => 'mdo', 'MD12G1143900' => 'mdo', 'MD13G1191400' => 'mdo', 'MD16G1191500' => 'mdo', 'Medtr1g085570' => 'mtr', 'Medtr1g104610' => 'mtr', 'Medtr2g097520' => 'mtr', 'Medtr4g021800' => 'mtr', 'Medtr4g021825' => 'mtr', 'Medtr4g064270' => 'mtr', 'Medtr4g064380' => 'mtr', 'Medtr7g062150' => 'mtr', 'MELO3C003138.2' => 'cme', 'MELO3C005187.2' => 'cme', 'MELO3C009252.2' => 'cme', 'MELO3C014481.2' => 'cme', 'MELO3C020616.2' => 'cme', 'MELO3C020617.2' => 'cme', 'MELO3C020618.2' => 'cme', 'Migut.G00328' => 'egut', 'Migut.J00320' => 'egut', 'Migut.L01000' => 'egut', 'Migut.L01953' => 'egut', 'MSTRG.10253' => 'ama', 'MSTRG.19077' => 'ama', 'MSTRG.26780' => 'ama', 'MSTRG.4023' => 'ama', 'MSTRG.5655' => 'ama', 'MSTRG.9992' => 'ama', 'Nitab4.5_0000043g0310' => 'nta', 'Nitab4.5_0000463g0080' => 'nta', 'Nitab4.5_0000705g0170' => 'nta', 'Nitab4.5_0001326g0060' => 'nta', 'Nitab4.5_0001628g0030' => 'nta', 'Nitab4.5_0002103g0110' => 'nta', 'Nitab4.5_0002946g0030' => 'nta', 'Nitab4.5_0004639g0030' => 'nta', 'Nn2g11149' => 'nnu', 'Nn2g13389' => 'nnu', 'Nn4g25326' => 'nnu', 'Nn4g26290' => 'nnu', 'Nn5g29865' => 'nnu', 'Oeu004163.1' => 'oeu', 'Oeu006901.1' => 'oeu', 'Oeu010096.1' => 'oeu', 'Oeu024340.1' => 'oeu', 'Oeu048369.1' => 'oeu', 'Os01g0973000' => 'osa', 'Os03g0273800' => 'osa', 'Os03g0701200' => 'osa', 'Os03g0834050' => 'osa', 'Os07g0634400' => 'osa', 'Peaxi162Scf00092g01414' => 'pax', 'Peaxi162Scf00165g00818' => 'pax', 'Peaxi162Scf00309g00516' => 'pax', 'Peaxi162Scf00774g00218' => 'pax', 'PGR004G1824' => 'pgr', 'PGR004G2606' => 'pgr', 'PGR031G2716' => 'pgr', 'PGR102G2460' => 'pgr', 'PGR142G2599' => 'pgr', 'PGSC0003DMG400000843' => 'stu', 'PGSC0003DMG400008829' => 'stu', 'PGSC0003DMG400030418' => 'stu', 'PGSC0003DMG400031834' => 'stu', 'PGSC0003DMG401028300' => 'stu', 'PGSC0003DMG402028300' => 'stu', 'Phvul.001G219300' => 'pvu', 'Phvul.007G056000' => 'pvu', 'Phvul.007G208000' => 'pvu', 'Phvul.008G119500' => 'pvu', 'Phvul.010G011200' => 'pvu', 'Phvul.010G014800' => 'pvu', 'Phvul.011G062900' => 'pvu', 'Phvul.L007043' => 'pvu', 'Potri.001G242300' => 'ptr', 'Potri.002G185300' => 'ptr', 'Potri.006G086900' => 'ptr', 'Potri.008G151700' => 'ptr', 'Potri.009G033500' => 'ptr', 'Potri.010G089300' => 'ptr', 'Potri.014G110800' => 'ptr', 'Pp3c27_8130' => 'ppa', 'Pp3c6_27410' => 'ppa', 'PRCOL_00001659' => 'pco', 'PRCOL_00001927' => 'pco', 'PRCOL_00003649' => 'pco', 'Prupe.1G011600' => 'ppe', 'Prupe.3G000800' => 'ppe', 'Prupe.3G001100' => 'ppe', 'Prupe.6G072700' => 'ppe', 'Prupe.6G072800' => 'ppe', 'Prupe.6G257300' => 'ppe', 'Prupe.8G033000' => 'ppe', 'Psat0s2633g0080' => 'psa', 'Psat0s3396g0080' => 'psa', 'Psat0s3396g0200' => 'psa', 'Psat3g139080' => 'psa', 'Psat5g285080' => 'psa', 'Psat6g157760' => 'psa', 'Psat6g208440' => 'psa', 'Psat7g215320' => 'psa', 'Psat7g215400' => 'psa', 'Psat7g235600' => 'psa', 'Psat7g235760' => 'psa', 'PSO063G4603' => 'pso', 'PSO210G0182' => 'pso', 'PSO210G0196' => 'pso', 'PSO339G0394' => 'pso', 'PSO339G4127' => 'pso', 'PSO513G0064' => 'pso', 'PSO761G0079' => 'pso', 'QL01p031003' => 'qlo', 'QL01p031078' => 'qlo', 'QL06p003004' => 'qlo', 'QL07p048731' => 'qlo', 'QL09p037427' => 'qlo', 'RcHm_v2.0_Chr3g0466361' => 'rch', 'RcHm_v2.0_Chr3g0485571' => 'rch', 'RcHm_v2.0_Chr4g0416551' => 'rch', 'RcHm_v2.0_Chr5g0065831' => 'rch', 'Rhsim01G0230500' => 'rsi', 'Rhsim05G0194000' => 'rsi', 'Rhsim08G0250400' => 'rsi', 'Sabra02G0131000' => 'sbr', 'Sabra06G0066300' => 'sbr', 'Sabra08G0115500' => 'sbr', 'Sabra09G0023900' => 'sbr', 'Sabra10G0054000' => 'sbr', 'Sabra14G0081500' => 'sbr', 'Sabra16G0147100' => 'sbr', 'SalBow2G2957' => 'sbo', 'SalBow4G3320' => 'sbo', 'SalBow8G1894' => 'sbo', 'Sc07g0007950' => 'sci', 'Sc12g0001360' => 'sci', 'Sc13g0004330' => 'sci', 'Sc20g0005010' => 'sci', 'Sed0000361' => 'sed', 'Sed0001706' => 'sed', 'Sed0002422' => 'sed', 'Sed0004029' => 'sed', 'Sed0004602' => 'sed', 'Sed0004943' => 'sed', 'Sed0008646' => 'sed', 'Sed0023313' => 'sed', 'Sed0024843' => 'sed', 'SEGI_00081' => 'sgi', 'SEGI_00947' => 'sgi', 'SEGI_04046' => 'sgi', 'SEGI_06880' => 'sgi', 'SEGI_09736' => 'sgi', 'SEGI_12741' => 'sgi', 'SEGI_14530' => 'sgi', 'SEGI_20705' => 'sgi', 'SEGI_26088' => 'sgi', 'SEGI_28323' => 'sgi', 'SEGI_33343' => 'sgi', 'SGA_v2.0_scaffold126G33775' => 'sas', 'SGA_v2.0_scaffold2G01337' => 'sas', 'SGA_v2.0_scaffold38G15006' => 'sas', 'SGA_v2.0_scaffold39G15264' => 'sas', 'SGA_v2.0_scaffold453G51880' => 'sas', 'SHI12696' => 'shi', 'SMO367G1096' => 'smo', 'Solyc01g068630.3' => 'sly', 'Solyc05g011880.3' => 'sly', 'Solyc06g076300.3' => 'sly', 'Solyc09g010940.4' => 'sly', 'Solyc09g075890.3' => 'sly', 'Sopen01g030560' => 'spe', 'Sopen05g006630' => 'spe', 'Sopen06g032720' => 'spe', 'Sopen09g005660' => 'spe', 'Sopen09g030690' => 'spe', 'Sp4g14540' => 'spa', 'Sp4g20030' => 'spa', 'Sp5g01320' => 'spa', 'Sp6g21170' => 'spa', 'Sp6g21180' => 'spa', 'Sp6g21190' => 'spa', 'Sp6g40220' => 'spa', 'TAR362G0122' => 'tar', 'TAR362G1338' => 'tar', 'TAR369G0590' => 'tar', 'TAR371G0824' => 'tar', 'TAR622G1429' => 'tar', 'TAR623G0734' => 'tar', 'TAR625G0441' => 'tar', 'TAR629G0976' => 'tar', 'TAR633G1195' => 'tar', 'TAR636G2660' => 'tar', 'THA.LOC104799440' => 'tha', 'THA.LOC104800966' => 'tha', 'THA.LOC104806559' => 'tha', 'THA.LOC104810765' => 'tha', 'THA.LOC104816266' => 'tha', 'THA.LOC104817419' => 'tha', 'THA.LOC104827021' => 'tha', 'Thecc.01G327400' => 'tca', 'Thecc.04G229200' => 'tca', 'Thecc.05G037400' => 'tca', 'Thecc.09G318600' => 'tca', 'Thecc.09G318700' => 'tca', 'Thhalv10006238m.g' => 'esa', 'Thhalv10014321m.g' => 'esa', 'Thhalv10014335m.g' => 'esa', 'Thhalv10015826m.g' => 'esa', 'Thhalv10017107m.g' => 'esa', 'Thhalv10017180m.g' => 'esa', 'Thhalv10029339m.g' => 'esa', 'TPR.G1699' => 'tpr', 'TPR.G23609' => 'tpr', 'TPR.G3081' => 'tpr', 'TPR.G40397' => 'tpr', 'TPR.G5522' => 'tpr', 'TPR.G5618' => 'tpr', 'TPR.G5626' => 'tpr', 'TWI09G1632' => 'twi', 'TWI23G1230' => 'twi', 'TWI53G1064' => 'twi', 'TWI59G0751' => 'twi', 'TWI74G0947' => 'twi', 'TWI77G0337' => 'twi', 'TWI79G1254' => 'twi', 'unitig_0.g2341' => 'ugi', 'unitig_26.g10006' => 'ugi', 'unitig_26.g10008' => 'ugi', 'unitig_26.g9192' => 'ugi', 'vmacro14547' => 'vma', 'vmacro15333' => 'vma', 'vmacro18743' => 'vma', 'vmacro20166' => 'vma', 'VMungo0331G0523' => 'vmu', 'VMungo0331G1202' => 'vmu', 'VMungo0720G1228' => 'vmu', 'VMungo0720G1514' => 'vmu', 'VMungo1080G0169' => 'vmu', 'VMungo1127G1475' => 'vmu', 'VMungo1383G1208' => 'vmu', 'VMungo1383G1698' => 'vmu', 'Zm00001eb012270' => 'zma', 'Zm00001eb054100' => 'zma', 'Zm00001eb063350' => 'zma', 'Zm00001eb328560' => 'zma', 'Zm00001eb342820' => 'zma', 'Zm00001eb362210' => 'zma', 'Zm00001eb397730' => 'zma', 'Zm00001eb399750' => 'zma' ) $gf_id = 'HOM05D000959' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000959' ) $data_identifier = 'HOM05D000959' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 5, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 5, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 10, 'mbi' => (int) 3, 'mco' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 2, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 3, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 11, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399750' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000959', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '622', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p07100' => 'bna', 'A03p11720' => 'bna', 'A05p08300' => 'bna', 'A05p13380' => 'bna', 'A09p54130' => 'bna', 'A10p16690' => 'bna', 'A10p16700' => 'bna', 'A10p33390' => 'bna', 'Aa31LG10G16020' => 'aar', 'Aa31LG1G11810' => 'aar', 'Aa31LG1G11830' => 'aar', 'Aa31LG1G22510' => 'aar', 'Aa31LG5G4890' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5793' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2310' => 'aag', 'Actinidia08499' => 'ach', 'Actinidia11262' => 'ach', 'Actinidia23926' => 'ach', 'Actinidia34420' => 'ach', 'Actinidia36970' => 'ach', 'Ah.02g111220' => 'amhyb', 'Ah.15g097750' => 'amhyb', 'AL4G27500' => 'aly', 'AL6G11470' => 'aly', 'AL8G35950' => 'aly', 'AL8G35960' => 'aly', 'AL8G35970' => 'aly', 'Aqoxy1G00912' => 'aox', 'Aqoxy2G02253' => 'aox', 'Aqoxy2G02411' => 'aox', 'Aqoxy5G00485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BZ66YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K8ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM4FUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6BF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HFV7XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25JBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0YNNV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MAKK6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P70IT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP2Z6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V61LZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YWP64R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3S9AI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7PGHH' => 'arhy', 'AT2G32150' => 'ath', 'AT3G62040' => 'ath', 'AT5G02230' => 'ath', 'AT5G59480' => 'ath', 'AT5G59490' => 'ath', 'ATR0332G060' => 'atr', 'ATR0559G190' => 'atr', 'ATR0693G294' => 'atr', 'Atru.chr3.3975' => 'acertr', 'Atru.chr3.3976' => 'acertr', 'Atru.chr3.3977' => 'acertr', 'Atru.chr4.2498' => 'acertr', 'Atru.chr5.838' => 'acertr', 'Atru.chr8.1990' => 'acertr', 'Atru.chr8.1991' => 'acertr', 'Atru.chr8.1992' => 'acertr', 'AUR62001759' => 'cqu', 'AUR62009545' => 'cqu', 'AUR62010474' => 'cqu', 'AUR62025820' => 'cqu', 'AUR62030422' => 'cqu', 'AUR62033605' => 'cqu', 'AUR62038615' => 'cqu', 'AUR62041347' => 'cqu', 'BcaB01g04574' => 'bca', 'BcaB02g09263' => 'bca', 'BcaB02g10453' => 'bca', 'BcaB05g22513' => 'bca', 'BcaB08g36253' => 'bca', 'BcaB08g36254' => 'bca', 'BcaC01g06519' => 'bca', 'BcaC02g11889' => 'bca', 'BcaC03g14010' => 'bca', 'BcaC03g18439' => 'bca', 'BcaC04g19765' => 'bca', 'BcaC09g48432' => 'bca', 'BcaNung07302' => 'bca', 'BolC2t06040H' => 'bol', 'BolC2t07346H' => 'bol', 'BolC3t13817H' => 'bol', 'BolC4t22625H' => 'bol', 'BolC4t23297H' => 'bol', 'BolC8t51278H' => 'bol', 'BolC9t58050H' => 'bol', 'BolC9t58051H' => 'bol', 'BolC9t60163H' => 'bol', 'BraA02t04712Z' => 'bra', 'BraA02t05791Z' => 'bra', 'BraA03t10483Z' => 'bra', 'BraA05t19795Z' => 'bra', 'BraA05t20276Z' => 'bra', 'BraA09t40827Z' => 'bra', 'BraA10t43750Z' => 'bra', 'BraA10t43751Z' => 'bra', 'BraA10t45370Z' => 'bra', 'C02p00400' => 'bna', 'C02p12460' => 'bna', 'C03p13680' => 'bna', 'C04p10270' => 'bna', 'C04p17500' => 'bna', 'C08p37010' => 'bna', 'C09p51880' => 'bna', 'C09p51890' => 'bna', 'C09p74300' => 'bna', 'CAN.G179.26' => 'can', 'CAN.G3384.1' => 'can', 'CAN.G394.68' => 'can', 'CAN.G907.13' => 'can', 'CANSAT11G0012' => 'cansat', 'CANSAT25G1586' => 'cansat', 'CANSAT35G0735' => 'cansat', 'CANSAT54G0556' => 'cansat', 'CANSAT64G0356' => 'cansat', 'CANSAT78G2042' => 'cansat', 'CARHR125920' => 'chi', 'CARHR131910' => 'chi', 'CARHR172390' => 'chi', 'CARHR211140' => 'chi', 'CARHR285850' => 'chi', 'CARHR285860' => 'chi', 'Carub.0004s1347' => 'cru', 'Carub.0004s1960' => 'cru', 'Carub.0005s2880' => 'cru', 'Carub.0006s0107' => 'cru', 'Carub.0008s2015' => 'cru', 'Carub.0008s2016' => 'cru', 'Carub.0008s2017' => 'cru', 'Ca_01315_v3' => 'car', 'Ca_05063_v3' => 'car', 'Ca_10231_v3' => 'car', 'Ca_10913_v3' => 'car', 'Ca_19156_v3' => 'car', 'Ca_23644_v3' => 'car', 'Ca_26735_v3' => 'car', 'Cc01_g13130' => 'ccan', 'Cc02_g21690' => 'ccan', 'Cc03_g03600' => 'ccan', 'Cc06_g02510' => 'ccan', 'CDE02G1265' => 'cde', 'CDE05G0415' => 'cde', 'CDE08G1082' => 'cde', 'Cfa005780' => 'cfa', 'Cfa011522' => 'cfa', 'Cfa011523' => 'cfa', 'Cfa015627' => 'cfa', 'Cfa017359' => 'cfa', 'Ciclev10005687m.g' => 'ccl', 'Ciclev10012173m.g' => 'ccl', 'Ciclev10021621m.g' => 'ccl', 'Ciclev10028968m.g' => 'ccl', 'Ciclev10029907m.g' => 'ccl', 'CiPaw.01G164800' => 'cil', 'CiPaw.07G083700' => 'cil', 'CiPaw.07G127000' => 'cil', 'CiPaw.07G136900' => 'cil', 'CiPaw.08G081700' => 'cil', 'CiPaw.09G194600' => 'cil', 'CiPaw.10G146500' => 'cil', 'CiPaw.13G091500' => 'cil', 'CiPaw.13G091600' => 'cil', 'ClCG00G003390' => 'cla', 'ClCG01G007220' => 'cla', 'ClCG03G001370' => 'cla', 'ClCG04G008100' => 'cla', 'ClCG06G006110' => 'cla', 'ClCG06G006130' => 'cla', 'ClCG10G021210' => 'cla', 'COL.COLO4_07648' => 'col', 'COL.COLO4_07650' => 'col', 'COL.COLO4_07651' => 'col', 'COL.COLO4_14780' => 'col', 'COL.COLO4_18546' => 'col', 'COL.COLO4_18547' => 'col', 'COL.COLO4_23103' => 'col', 'COL.COLO4_30419' => 'col', 'COL.COLO4_34232' => 'col', 'Cpa.g.sc169.20' => 'cpa', 'Cpa.g.sc57.45' => 'cpa', 'Cpa.g.sc58.124' => 'cpa', 'Cpa.g.sc58.125' => 'cpa', 'Cpa.g.sc81.118' => 'cpa', 'Cpa.g.sc81.119' => 'cpa', 'Cre12.g524700' => 'cre', 'CsaV3_1G034430' => 'csa', 'CsaV3_1G034440' => 'csa', 'CsaV3_1G034450' => 'csa', 'CsaV3_3G034830' => 'csa', 'CsaV3_4G025090' => 'csa', 'CsaV3_5G018660' => 'csa', 'CsaV3_6G038160' => 'csa', 'CSS0003447' => 'camsi', 'CSS0017840' => 'camsi', 'CSS0019260' => 'camsi', 'CSS0040375' => 'camsi', 'CSS0042533' => 'camsi', 'DCAR_005960' => 'dca', 'DCAR_012104' => 'dca', 'DCAR_012105' => 'dca', 'DCAR_012293' => 'dca', 'DCAR_015632' => 'dca', 'DCAR_024602' => 'dca', 'DCAR_028752' => 'dca', 'Dinv06261' => 'din', 'Dinv13982' => 'din', 'Dinv17029' => 'din', 'Dinv18463' => 'din', 'Dinv33181' => 'din', 'Dinv35585' => 'din', 'Dinv37161' => 'din', 'Dinv42977' => 'din', 'Dinv43122' => 'din', 'Dinv44517' => 'din', 'Duzib093G0256' => 'dzi', 'Duzib106G1254' => 'dzi', 'Duzib128G1789' => 'dzi', 'Duzib133G0633' => 'dzi', 'Duzib138G0510' => 'dzi', 'Duzib150G1084' => 'dzi', 'Duzib168G0488' => 'dzi', 'Duzib168G1523' => 'dzi', 'Duzib170G0133' => 'dzi', 'ECA234G1433' => 'eca', 'ECA236G1432' => 'eca', 'ECA236G2256' => 'eca', 'ECA236G2365' => 'eca', 'ECA236G4830' => 'eca', 'ECA248G1505' => 'eca', 'EL10Ac3g06431' => 'bvu', 'EL10Ac5g12577' => 'bvu', 'EL10Ac6g13533' => 'bvu', 'EL10Ac7g16045' => 'bvu', 'Eucgr.A01281' => 'egr', 'Eucgr.B02326' => 'egr', 'Eucgr.H03532' => 'egr', 'Eucgr.K00553' => 'egr', 'Eucgr.K03116' => 'egr', 'FAN02G3963' => 'fan', 'FAN05G0438' => 'fan', 'FAN09G2434' => 'fan', 'FAN12G3984' => 'fan', 'FAN14G0798' => 'fan', 'FAN17G0652' => 'fan', 'FAN19G1988' => 'fan', 'FAN22G0632' => 'fan', 'FAN23G0387' => 'fan', 'FAN26G1323' => 'fan', 'FAN28G0666' => 'fan', 'FvH4_1g26080' => 'fve', 'FvH4_3g36780' => 'fve', 'FvH4_4g15270' => 'fve', 'FvH4_6g13490' => 'fve', 'Glyma.01G098700' => 'gma', 'Glyma.03G065900' => 'gma', 'Glyma.03G073754' => 'gma', 'Glyma.03G073758' => 'gma', 'Glyma.03G083200' => 'gma', 'Glyma.03G225500' => 'gma', 'Glyma.05G037766' => 'gma', 'Glyma.07G133500' => 'gma', 'Glyma.10G139400' => 'gma', 'Glyma.10G248900' => 'gma', 'Glyma.11G137800' => 'gma', 'Glyma.12G061300' => 'gma', 'Glyma.13G337900' => 'gma', 'Glyma.15G036600' => 'gma', 'Glyma.18G182800' => 'gma', 'Glyma.19G222500' => 'gma', 'Glyma.20G144800' => 'gma', 'Gohir.A01G222000' => 'ghi', 'Gohir.A03G044000' => 'ghi', 'Gohir.A03G044100' => 'ghi', 'Gohir.A04G083100' => 'ghi', 'Gohir.A07G127200' => 'ghi', 'Gohir.A07G132400' => 'ghi', 'Gohir.A08G000700' => 'ghi', 'Gohir.A11G327300' => 'ghi', 'Gohir.D01G211500' => 'ghi', 'Gohir.D03G123400' => 'ghi', 'Gohir.D03G123500' => 'ghi', 'Gohir.D04G121800' => 'ghi', 'Gohir.D07G131500' => 'ghi', 'Gohir.D07G136600' => 'ghi', 'Gohir.D08G011600' => 'ghi', 'Gohir.D11G346200' => 'ghi', 'Gorai.001G142800' => 'gra', 'Gorai.001G148700' => 'gra', 'Gorai.002G257300' => 'gra', 'Gorai.003G130000' => 'gra', 'Gorai.003G130100' => 'gra', 'Gorai.004G005300' => 'gra', 'Gorai.007G376500' => 'gra', 'Gorai.012G104700' => 'gra', 'GSVIVG01017946001' => 'vvi', 'GSVIVG01024928001' => 'vvi', 'GSVIVG01028227001' => 'vvi', 'GSVIVG01034151001' => 'vvi', 'HanXRQChr05g0135031' => 'han', 'HanXRQChr05g0135041' => 'han', 'HanXRQChr05g0140021' => 'han', 'HanXRQChr06g0178981' => 'han', 'HanXRQChr07g0188251' => 'han', 'HanXRQChr08g0235311' => 'han', 'HanXRQChr09g0271011' => 'han', 'HanXRQChr10g0293321' => 'han', 'HanXRQChr13g0388171' => 'han', 'Haze_00916' => 'cav', 'Haze_05063' => 'cav', 'Haze_20814' => 'cav', 'Haze_24128' => 'cav', 'Hma1.2p1_0745F.1_g212010' => 'hma', 'Hma1.2p1_0757F.1_g213260' => 'hma', 'Hma1.2p1_0936F.1_g238840' => 'hma', 'Hma1.2p1_1735F.1_g299890' => 'hma', 'Hma1.2p1_1861F.1_g305685' => 'hma', 'HPP92_003397' => 'vpl', 'HPP92_012597' => 'vpl', 'HPP92_015520' => 'vpl', 'HPP92_015539' => 'vpl', 'HPP92_020373' => 'vpl', 'Hund04938' => 'sun', 'Hund10677' => 'sun', 'Hund11033' => 'sun', 'Hund12155' => 'sun', 'Lalb_Chr01g0022551' => 'lal', 'Lalb_Chr03g0042341' => 'lal', 'Lalb_Chr07g0192931' => 'lal', 'Lalb_Chr12g0209551' => 'lal', 'Lalb_Chr19g0125251' => 'lal', 'Lalb_Chr19g0137891' => 'lal', 'Lalb_Chr21g0304641' => 'lal', 'Lalb_Chr21g0309881' => 'lal', 'Lj1A5T12' => 'lonja', 'Lj1C148G10' => 'lonja', 'Lj2A93T83' => 'lonja', 'Lj3A738G68' => 'lonja', 'Lj3C966T1' => 'lonja', 'Lj3g0018958' => 'lja', 'Lj3g0021831' => 'lja', 'Lj3g0025443' => 'lja', 'Lj4g0026809' => 'lja', 'Lj5g0012558' => 'lja', 'Lj5g0021586' => 'lja', 'Lsat_1_v5_gn_5_156840' => 'lsa', 'Lsat_1_v5_gn_8_73460' => 'lsa', 'Lsat_1_v5_gn_8_73481' => 'lsa', 'Lsat_1_v5_gn_9_31601' => 'lsa', 'Lsat_1_v5_gn_9_77320' => 'lsa', 'Manes.01G171300' => 'mes', 'Manes.01G171400' => 'mes', 'Manes.01G236100' => 'mes', 'Manes.02G130500' => 'mes', 'Manes.02G130600' => 'mes', 'Manes.03G180200' => 'mes', 'Manes.05G007000' => 'mes', 'Manes.08G084400' => 'mes', 'Manes.09G092600' => 'mes', 'Manes.15G027900' => 'mes', 'MBI04_g40948_MAGBIO' => 'mbi', 'MBI14_g12123_MAGBIO' => 'mbi', 'MBI18_g28915_MAGBIO' => 'mbi', 'MCO09G053' => 'mco', 'MCO11G782' => 'mco', 'MCO15G215' => 'mco', 'MD03G1088500' => 'mdo', 'MD03G1088600' => 'mdo', 'MD04G1130800' => 'mdo', 'MD09G1291700' => 'mdo', 'MD11G1097500' => 'mdo', 'MD11G1097600' => 'mdo', 'MD12G1143900' => 'mdo', 'MD13G1191400' => 'mdo', 'MD16G1191500' => 'mdo', 'Medtr1g085570' => 'mtr', 'Medtr1g104610' => 'mtr', 'Medtr2g097520' => 'mtr', 'Medtr4g021800' => 'mtr', 'Medtr4g021825' => 'mtr', 'Medtr4g064270' => 'mtr', 'Medtr4g064380' => 'mtr', 'Medtr7g062150' => 'mtr', 'MELO3C003138.2' => 'cme', 'MELO3C005187.2' => 'cme', 'MELO3C009252.2' => 'cme', 'MELO3C014481.2' => 'cme', 'MELO3C020616.2' => 'cme', 'MELO3C020617.2' => 'cme', 'MELO3C020618.2' => 'cme', 'Migut.G00328' => 'egut', 'Migut.J00320' => 'egut', 'Migut.L01000' => 'egut', 'Migut.L01953' => 'egut', 'MSTRG.10253' => 'ama', 'MSTRG.19077' => 'ama', 'MSTRG.26780' => 'ama', 'MSTRG.4023' => 'ama', 'MSTRG.5655' => 'ama', 'MSTRG.9992' => 'ama', 'Nitab4.5_0000043g0310' => 'nta', 'Nitab4.5_0000463g0080' => 'nta', 'Nitab4.5_0000705g0170' => 'nta', 'Nitab4.5_0001326g0060' => 'nta', 'Nitab4.5_0001628g0030' => 'nta', 'Nitab4.5_0002103g0110' => 'nta', 'Nitab4.5_0002946g0030' => 'nta', 'Nitab4.5_0004639g0030' => 'nta', 'Nn2g11149' => 'nnu', 'Nn2g13389' => 'nnu', 'Nn4g25326' => 'nnu', 'Nn4g26290' => 'nnu', 'Nn5g29865' => 'nnu', 'Oeu004163.1' => 'oeu', 'Oeu006901.1' => 'oeu', 'Oeu010096.1' => 'oeu', 'Oeu024340.1' => 'oeu', 'Oeu048369.1' => 'oeu', 'Os01g0973000' => 'osa', 'Os03g0273800' => 'osa', 'Os03g0701200' => 'osa', 'Os03g0834050' => 'osa', 'Os07g0634400' => 'osa', 'Peaxi162Scf00092g01414' => 'pax', 'Peaxi162Scf00165g00818' => 'pax', 'Peaxi162Scf00309g00516' => 'pax', 'Peaxi162Scf00774g00218' => 'pax', 'PGR004G1824' => 'pgr', 'PGR004G2606' => 'pgr', 'PGR031G2716' => 'pgr', 'PGR102G2460' => 'pgr', 'PGR142G2599' => 'pgr', 'PGSC0003DMG400000843' => 'stu', 'PGSC0003DMG400008829' => 'stu', 'PGSC0003DMG400030418' => 'stu', 'PGSC0003DMG400031834' => 'stu', 'PGSC0003DMG401028300' => 'stu', 'PGSC0003DMG402028300' => 'stu', 'Phvul.001G219300' => 'pvu', 'Phvul.007G056000' => 'pvu', 'Phvul.007G208000' => 'pvu', 'Phvul.008G119500' => 'pvu', 'Phvul.010G011200' => 'pvu', 'Phvul.010G014800' => 'pvu', 'Phvul.011G062900' => 'pvu', 'Phvul.L007043' => 'pvu', 'Potri.001G242300' => 'ptr', 'Potri.002G185300' => 'ptr', 'Potri.006G086900' => 'ptr', 'Potri.008G151700' => 'ptr', 'Potri.009G033500' => 'ptr', 'Potri.010G089300' => 'ptr', 'Potri.014G110800' => 'ptr', 'Pp3c27_8130' => 'ppa', 'Pp3c6_27410' => 'ppa', 'PRCOL_00001659' => 'pco', 'PRCOL_00001927' => 'pco', 'PRCOL_00003649' => 'pco', 'Prupe.1G011600' => 'ppe', 'Prupe.3G000800' => 'ppe', 'Prupe.3G001100' => 'ppe', 'Prupe.6G072700' => 'ppe', 'Prupe.6G072800' => 'ppe', 'Prupe.6G257300' => 'ppe', 'Prupe.8G033000' => 'ppe', 'Psat0s2633g0080' => 'psa', 'Psat0s3396g0080' => 'psa', 'Psat0s3396g0200' => 'psa', 'Psat3g139080' => 'psa', 'Psat5g285080' => 'psa', 'Psat6g157760' => 'psa', 'Psat6g208440' => 'psa', 'Psat7g215320' => 'psa', 'Psat7g215400' => 'psa', 'Psat7g235600' => 'psa', 'Psat7g235760' => 'psa', 'PSO063G4603' => 'pso', 'PSO210G0182' => 'pso', 'PSO210G0196' => 'pso', 'PSO339G0394' => 'pso', 'PSO339G4127' => 'pso', 'PSO513G0064' => 'pso', 'PSO761G0079' => 'pso', 'QL01p031003' => 'qlo', 'QL01p031078' => 'qlo', 'QL06p003004' => 'qlo', 'QL07p048731' => 'qlo', 'QL09p037427' => 'qlo', 'RcHm_v2.0_Chr3g0466361' => 'rch', 'RcHm_v2.0_Chr3g0485571' => 'rch', 'RcHm_v2.0_Chr4g0416551' => 'rch', 'RcHm_v2.0_Chr5g0065831' => 'rch', 'Rhsim01G0230500' => 'rsi', 'Rhsim05G0194000' => 'rsi', 'Rhsim08G0250400' => 'rsi', 'Sabra02G0131000' => 'sbr', 'Sabra06G0066300' => 'sbr', 'Sabra08G0115500' => 'sbr', 'Sabra09G0023900' => 'sbr', 'Sabra10G0054000' => 'sbr', 'Sabra14G0081500' => 'sbr', 'Sabra16G0147100' => 'sbr', 'SalBow2G2957' => 'sbo', 'SalBow4G3320' => 'sbo', 'SalBow8G1894' => 'sbo', 'Sc07g0007950' => 'sci', 'Sc12g0001360' => 'sci', 'Sc13g0004330' => 'sci', 'Sc20g0005010' => 'sci', 'Sed0000361' => 'sed', 'Sed0001706' => 'sed', 'Sed0002422' => 'sed', 'Sed0004029' => 'sed', 'Sed0004602' => 'sed', 'Sed0004943' => 'sed', 'Sed0008646' => 'sed', 'Sed0023313' => 'sed', 'Sed0024843' => 'sed', 'SEGI_00081' => 'sgi', 'SEGI_00947' => 'sgi', 'SEGI_04046' => 'sgi', 'SEGI_06880' => 'sgi', 'SEGI_09736' => 'sgi', 'SEGI_12741' => 'sgi', 'SEGI_14530' => 'sgi', 'SEGI_20705' => 'sgi', 'SEGI_26088' => 'sgi', 'SEGI_28323' => 'sgi', 'SEGI_33343' => 'sgi', 'SGA_v2.0_scaffold126G33775' => 'sas', 'SGA_v2.0_scaffold2G01337' => 'sas', 'SGA_v2.0_scaffold38G15006' => 'sas', 'SGA_v2.0_scaffold39G15264' => 'sas', 'SGA_v2.0_scaffold453G51880' => 'sas', 'SHI12696' => 'shi', 'SMO367G1096' => 'smo', 'Solyc01g068630.3' => 'sly', 'Solyc05g011880.3' => 'sly', 'Solyc06g076300.3' => 'sly', 'Solyc09g010940.4' => 'sly', 'Solyc09g075890.3' => 'sly', 'Sopen01g030560' => 'spe', 'Sopen05g006630' => 'spe', 'Sopen06g032720' => 'spe', 'Sopen09g005660' => 'spe', 'Sopen09g030690' => 'spe', 'Sp4g14540' => 'spa', 'Sp4g20030' => 'spa', 'Sp5g01320' => 'spa', 'Sp6g21170' => 'spa', 'Sp6g21180' => 'spa', 'Sp6g21190' => 'spa', 'Sp6g40220' => 'spa', 'TAR362G0122' => 'tar', 'TAR362G1338' => 'tar', 'TAR369G0590' => 'tar', 'TAR371G0824' => 'tar', 'TAR622G1429' => 'tar', 'TAR623G0734' => 'tar', 'TAR625G0441' => 'tar', 'TAR629G0976' => 'tar', 'TAR633G1195' => 'tar', 'TAR636G2660' => 'tar', 'THA.LOC104799440' => 'tha', 'THA.LOC104800966' => 'tha', 'THA.LOC104806559' => 'tha', 'THA.LOC104810765' => 'tha', 'THA.LOC104816266' => 'tha', 'THA.LOC104817419' => 'tha', 'THA.LOC104827021' => 'tha', 'Thecc.01G327400' => 'tca', 'Thecc.04G229200' => 'tca', 'Thecc.05G037400' => 'tca', 'Thecc.09G318600' => 'tca', 'Thecc.09G318700' => 'tca', 'Thhalv10006238m.g' => 'esa', 'Thhalv10014321m.g' => 'esa', 'Thhalv10014335m.g' => 'esa', 'Thhalv10015826m.g' => 'esa', 'Thhalv10017107m.g' => 'esa', 'Thhalv10017180m.g' => 'esa', 'Thhalv10029339m.g' => 'esa', 'TPR.G1699' => 'tpr', 'TPR.G23609' => 'tpr', 'TPR.G3081' => 'tpr', 'TPR.G40397' => 'tpr', 'TPR.G5522' => 'tpr', 'TPR.G5618' => 'tpr', 'TPR.G5626' => 'tpr', 'TWI09G1632' => 'twi', 'TWI23G1230' => 'twi', 'TWI53G1064' => 'twi', 'TWI59G0751' => 'twi', 'TWI74G0947' => 'twi', 'TWI77G0337' => 'twi', 'TWI79G1254' => 'twi', 'unitig_0.g2341' => 'ugi', 'unitig_26.g10006' => 'ugi', 'unitig_26.g10008' => 'ugi', 'unitig_26.g9192' => 'ugi', 'vmacro14547' => 'vma', 'vmacro15333' => 'vma', 'vmacro18743' => 'vma', 'vmacro20166' => 'vma', 'VMungo0331G0523' => 'vmu', 'VMungo0331G1202' => 'vmu', 'VMungo0720G1228' => 'vmu', 'VMungo0720G1514' => 'vmu', 'VMungo1080G0169' => 'vmu', 'VMungo1127G1475' => 'vmu', 'VMungo1383G1208' => 'vmu', 'VMungo1383G1698' => 'vmu', 'Zm00001eb012270' => 'zma', 'Zm00001eb054100' => 'zma', 'Zm00001eb063350' => 'zma', 'Zm00001eb328560' => 'zma', 'Zm00001eb342820' => 'zma', 'Zm00001eb362210' => 'zma', 'Zm00001eb397730' => 'zma', 'Zm00001eb399750' => 'zma' ), 'gf_id' => 'HOM05D000959', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000959' ), 'data_identifier' => 'HOM05D000959', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000959', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '622', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p07100' => 'bna', 'A03p11720' => 'bna', 'A05p08300' => 'bna', 'A05p13380' => 'bna', 'A09p54130' => 'bna', 'A10p16690' => 'bna', 'A10p16700' => 'bna', 'A10p33390' => 'bna', 'Aa31LG10G16020' => 'aar', 'Aa31LG1G11810' => 'aar', 'Aa31LG1G11830' => 'aar', 'Aa31LG1G22510' => 'aar', 'Aa31LG5G4890' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5793' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2310' => 'aag', 'Actinidia08499' => 'ach', 'Actinidia11262' => 'ach', 'Actinidia23926' => 'ach', 'Actinidia34420' => 'ach', 'Actinidia36970' => 'ach', 'Ah.02g111220' => 'amhyb', 'Ah.15g097750' => 'amhyb', 'AL4G27500' => 'aly', 'AL6G11470' => 'aly', 'AL8G35950' => 'aly', 'AL8G35960' => 'aly', 'AL8G35970' => 'aly', 'Aqoxy1G00912' => 'aox', 'Aqoxy2G02253' => 'aox', 'Aqoxy2G02411' => 'aox', 'Aqoxy5G00485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BZ66YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K8ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM4FUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6BF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HFV7XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25JBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0YNNV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MAKK6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P70IT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP2Z6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V61LZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YWP64R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3S9AI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7PGHH' => 'arhy', 'AT2G32150' => 'ath', 'AT3G62040' => 'ath', 'AT5G02230' => 'ath', 'AT5G59480' => 'ath', 'AT5G59490' => 'ath', 'ATR0332G060' => 'atr', 'ATR0559G190' => 'atr', 'ATR0693G294' => 'atr', 'Atru.chr3.3975' => 'acertr', 'Atru.chr3.3976' => 'acertr', 'Atru.chr3.3977' => 'acertr', 'Atru.chr4.2498' => 'acertr', 'Atru.chr5.838' => 'acertr', 'Atru.chr8.1990' => 'acertr', 'Atru.chr8.1991' => 'acertr', 'Atru.chr8.1992' => 'acertr', 'AUR62001759' => 'cqu', 'AUR62009545' => 'cqu', 'AUR62010474' => 'cqu', 'AUR62025820' => 'cqu', 'AUR62030422' => 'cqu', 'AUR62033605' => 'cqu', 'AUR62038615' => 'cqu', 'AUR62041347' => 'cqu', 'BcaB01g04574' => 'bca', 'BcaB02g09263' => 'bca', 'BcaB02g10453' => 'bca', 'BcaB05g22513' => 'bca', 'BcaB08g36253' => 'bca', 'BcaB08g36254' => 'bca', 'BcaC01g06519' => 'bca', 'BcaC02g11889' => 'bca', 'BcaC03g14010' => 'bca', 'BcaC03g18439' => 'bca', 'BcaC04g19765' => 'bca', 'BcaC09g48432' => 'bca', 'BcaNung07302' => 'bca', 'BolC2t06040H' => 'bol', 'BolC2t07346H' => 'bol', 'BolC3t13817H' => 'bol', 'BolC4t22625H' => 'bol', 'BolC4t23297H' => 'bol', 'BolC8t51278H' => 'bol', 'BolC9t58050H' => 'bol', 'BolC9t58051H' => 'bol', 'BolC9t60163H' => 'bol', 'BraA02t04712Z' => 'bra', 'BraA02t05791Z' => 'bra', 'BraA03t10483Z' => 'bra', 'BraA05t19795Z' => 'bra', 'BraA05t20276Z' => 'bra', 'BraA09t40827Z' => 'bra', 'BraA10t43750Z' => 'bra', 'BraA10t43751Z' => 'bra', 'BraA10t45370Z' => 'bra', 'C02p00400' => 'bna', 'C02p12460' => 'bna', 'C03p13680' => 'bna', 'C04p10270' => 'bna', 'C04p17500' => 'bna', 'C08p37010' => 'bna', 'C09p51880' => 'bna', 'C09p51890' => 'bna', 'C09p74300' => 'bna', 'CAN.G179.26' => 'can', 'CAN.G3384.1' => 'can', 'CAN.G394.68' => 'can', 'CAN.G907.13' => 'can', 'CANSAT11G0012' => 'cansat', 'CANSAT25G1586' => 'cansat', 'CANSAT35G0735' => 'cansat', 'CANSAT54G0556' => 'cansat', 'CANSAT64G0356' => 'cansat', 'CANSAT78G2042' => 'cansat', 'CARHR125920' => 'chi', 'CARHR131910' => 'chi', 'CARHR172390' => 'chi', 'CARHR211140' => 'chi', 'CARHR285850' => 'chi', 'CARHR285860' => 'chi', 'Carub.0004s1347' => 'cru', 'Carub.0004s1960' => 'cru', 'Carub.0005s2880' => 'cru', 'Carub.0006s0107' => 'cru', 'Carub.0008s2015' => 'cru', 'Carub.0008s2016' => 'cru', 'Carub.0008s2017' => 'cru', 'Ca_01315_v3' => 'car', 'Ca_05063_v3' => 'car', 'Ca_10231_v3' => 'car', 'Ca_10913_v3' => 'car', 'Ca_19156_v3' => 'car', 'Ca_23644_v3' => 'car', 'Ca_26735_v3' => 'car', 'Cc01_g13130' => 'ccan', 'Cc02_g21690' => 'ccan', 'Cc03_g03600' => 'ccan', 'Cc06_g02510' => 'ccan', 'CDE02G1265' => 'cde', 'CDE05G0415' => 'cde', 'CDE08G1082' => 'cde', 'Cfa005780' => 'cfa', 'Cfa011522' => 'cfa', 'Cfa011523' => 'cfa', 'Cfa015627' => 'cfa', 'Cfa017359' => 'cfa', 'Ciclev10005687m.g' => 'ccl', 'Ciclev10012173m.g' => 'ccl', 'Ciclev10021621m.g' => 'ccl', 'Ciclev10028968m.g' => 'ccl', 'Ciclev10029907m.g' => 'ccl', 'CiPaw.01G164800' => 'cil', 'CiPaw.07G083700' => 'cil', 'CiPaw.07G127000' => 'cil', 'CiPaw.07G136900' => 'cil', 'CiPaw.08G081700' => 'cil', 'CiPaw.09G194600' => 'cil', 'CiPaw.10G146500' => 'cil', 'CiPaw.13G091500' => 'cil', 'CiPaw.13G091600' => 'cil', 'ClCG00G003390' => 'cla', 'ClCG01G007220' => 'cla', 'ClCG03G001370' => 'cla', 'ClCG04G008100' => 'cla', 'ClCG06G006110' => 'cla', 'ClCG06G006130' => 'cla', 'ClCG10G021210' => 'cla', 'COL.COLO4_07648' => 'col', 'COL.COLO4_07650' => 'col', 'COL.COLO4_07651' => 'col', 'COL.COLO4_14780' => 'col', 'COL.COLO4_18546' => 'col', 'COL.COLO4_18547' => 'col', 'COL.COLO4_23103' => 'col', 'COL.COLO4_30419' => 'col', 'COL.COLO4_34232' => 'col', 'Cpa.g.sc169.20' => 'cpa', 'Cpa.g.sc57.45' => 'cpa', 'Cpa.g.sc58.124' => 'cpa', 'Cpa.g.sc58.125' => 'cpa', 'Cpa.g.sc81.118' => 'cpa', 'Cpa.g.sc81.119' => 'cpa', 'Cre12.g524700' => 'cre', 'CsaV3_1G034430' => 'csa', 'CsaV3_1G034440' => 'csa', 'CsaV3_1G034450' => 'csa', 'CsaV3_3G034830' => 'csa', 'CsaV3_4G025090' => 'csa', 'CsaV3_5G018660' => 'csa', 'CsaV3_6G038160' => 'csa', 'CSS0003447' => 'camsi', 'CSS0017840' => 'camsi', 'CSS0019260' => 'camsi', 'CSS0040375' => 'camsi', 'CSS0042533' => 'camsi', 'DCAR_005960' => 'dca', 'DCAR_012104' => 'dca', 'DCAR_012105' => 'dca', 'DCAR_012293' => 'dca', 'DCAR_015632' => 'dca', 'DCAR_024602' => 'dca', 'DCAR_028752' => 'dca', 'Dinv06261' => 'din', 'Dinv13982' => 'din', 'Dinv17029' => 'din', 'Dinv18463' => 'din', 'Dinv33181' => 'din', 'Dinv35585' => 'din', 'Dinv37161' => 'din', 'Dinv42977' => 'din', 'Dinv43122' => 'din', 'Dinv44517' => 'din', 'Duzib093G0256' => 'dzi', 'Duzib106G1254' => 'dzi', 'Duzib128G1789' => 'dzi', 'Duzib133G0633' => 'dzi', 'Duzib138G0510' => 'dzi', 'Duzib150G1084' => 'dzi', 'Duzib168G0488' => 'dzi', 'Duzib168G1523' => 'dzi', 'Duzib170G0133' => 'dzi', 'ECA234G1433' => 'eca', 'ECA236G1432' => 'eca', 'ECA236G2256' => 'eca', 'ECA236G2365' => 'eca', 'ECA236G4830' => 'eca', 'ECA248G1505' => 'eca', 'EL10Ac3g06431' => 'bvu', 'EL10Ac5g12577' => 'bvu', 'EL10Ac6g13533' => 'bvu', 'EL10Ac7g16045' => 'bvu', 'Eucgr.A01281' => 'egr', 'Eucgr.B02326' => 'egr', 'Eucgr.H03532' => 'egr', 'Eucgr.K00553' => 'egr', 'Eucgr.K03116' => 'egr', 'FAN02G3963' => 'fan', 'FAN05G0438' => 'fan', 'FAN09G2434' => 'fan', 'FAN12G3984' => 'fan', 'FAN14G0798' => 'fan', 'FAN17G0652' => 'fan', 'FAN19G1988' => 'fan', 'FAN22G0632' => 'fan', 'FAN23G0387' => 'fan', 'FAN26G1323' => 'fan', 'FAN28G0666' => 'fan', 'FvH4_1g26080' => 'fve', 'FvH4_3g36780' => 'fve', 'FvH4_4g15270' => 'fve', 'FvH4_6g13490' => 'fve', 'Glyma.01G098700' => 'gma', 'Glyma.03G065900' => 'gma', 'Glyma.03G073754' => 'gma', 'Glyma.03G073758' => 'gma', 'Glyma.03G083200' => 'gma', 'Glyma.03G225500' => 'gma', 'Glyma.05G037766' => 'gma', 'Glyma.07G133500' => 'gma', 'Glyma.10G139400' => 'gma', 'Glyma.10G248900' => 'gma', 'Glyma.11G137800' => 'gma', 'Glyma.12G061300' => 'gma', 'Glyma.13G337900' => 'gma', 'Glyma.15G036600' => 'gma', 'Glyma.18G182800' => 'gma', 'Glyma.19G222500' => 'gma', 'Glyma.20G144800' => 'gma', 'Gohir.A01G222000' => 'ghi', 'Gohir.A03G044000' => 'ghi', 'Gohir.A03G044100' => 'ghi', 'Gohir.A04G083100' => 'ghi', 'Gohir.A07G127200' => 'ghi', 'Gohir.A07G132400' => 'ghi', 'Gohir.A08G000700' => 'ghi', 'Gohir.A11G327300' => 'ghi', 'Gohir.D01G211500' => 'ghi', 'Gohir.D03G123400' => 'ghi', 'Gohir.D03G123500' => 'ghi', 'Gohir.D04G121800' => 'ghi', 'Gohir.D07G131500' => 'ghi', 'Gohir.D07G136600' => 'ghi', 'Gohir.D08G011600' => 'ghi', 'Gohir.D11G346200' => 'ghi', 'Gorai.001G142800' => 'gra', 'Gorai.001G148700' => 'gra', 'Gorai.002G257300' => 'gra', 'Gorai.003G130000' => 'gra', 'Gorai.003G130100' => 'gra', 'Gorai.004G005300' => 'gra', 'Gorai.007G376500' => 'gra', 'Gorai.012G104700' => 'gra', 'GSVIVG01017946001' => 'vvi', 'GSVIVG01024928001' => 'vvi', 'GSVIVG01028227001' => 'vvi', 'GSVIVG01034151001' => 'vvi', 'HanXRQChr05g0135031' => 'han', 'HanXRQChr05g0135041' => 'han', 'HanXRQChr05g0140021' => 'han', 'HanXRQChr06g0178981' => 'han', 'HanXRQChr07g0188251' => 'han', 'HanXRQChr08g0235311' => 'han', 'HanXRQChr09g0271011' => 'han', 'HanXRQChr10g0293321' => 'han', 'HanXRQChr13g0388171' => 'han', 'Haze_00916' => 'cav', 'Haze_05063' => 'cav', 'Haze_20814' => 'cav', 'Haze_24128' => 'cav', 'Hma1.2p1_0745F.1_g212010' => 'hma', 'Hma1.2p1_0757F.1_g213260' => 'hma', 'Hma1.2p1_0936F.1_g238840' => 'hma', 'Hma1.2p1_1735F.1_g299890' => 'hma', 'Hma1.2p1_1861F.1_g305685' => 'hma', 'HPP92_003397' => 'vpl', 'HPP92_012597' => 'vpl', 'HPP92_015520' => 'vpl', 'HPP92_015539' => 'vpl', 'HPP92_020373' => 'vpl', 'Hund04938' => 'sun', 'Hund10677' => 'sun', 'Hund11033' => 'sun', 'Hund12155' => 'sun', 'Lalb_Chr01g0022551' => 'lal', 'Lalb_Chr03g0042341' => 'lal', 'Lalb_Chr07g0192931' => 'lal', 'Lalb_Chr12g0209551' => 'lal', 'Lalb_Chr19g0125251' => 'lal', 'Lalb_Chr19g0137891' => 'lal', 'Lalb_Chr21g0304641' => 'lal', 'Lalb_Chr21g0309881' => 'lal', 'Lj1A5T12' => 'lonja', 'Lj1C148G10' => 'lonja', 'Lj2A93T83' => 'lonja', 'Lj3A738G68' => 'lonja', 'Lj3C966T1' => 'lonja', 'Lj3g0018958' => 'lja', 'Lj3g0021831' => 'lja', 'Lj3g0025443' => 'lja', 'Lj4g0026809' => 'lja', 'Lj5g0012558' => 'lja', 'Lj5g0021586' => 'lja', 'Lsat_1_v5_gn_5_156840' => 'lsa', 'Lsat_1_v5_gn_8_73460' => 'lsa', 'Lsat_1_v5_gn_8_73481' => 'lsa', 'Lsat_1_v5_gn_9_31601' => 'lsa', 'Lsat_1_v5_gn_9_77320' => 'lsa', 'Manes.01G171300' => 'mes', 'Manes.01G171400' => 'mes', 'Manes.01G236100' => 'mes', 'Manes.02G130500' => 'mes', 'Manes.02G130600' => 'mes', 'Manes.03G180200' => 'mes', 'Manes.05G007000' => 'mes', 'Manes.08G084400' => 'mes', 'Manes.09G092600' => 'mes', 'Manes.15G027900' => 'mes', 'MBI04_g40948_MAGBIO' => 'mbi', 'MBI14_g12123_MAGBIO' => 'mbi', 'MBI18_g28915_MAGBIO' => 'mbi', 'MCO09G053' => 'mco', 'MCO11G782' => 'mco', 'MCO15G215' => 'mco', 'MD03G1088500' => 'mdo', 'MD03G1088600' => 'mdo', 'MD04G1130800' => 'mdo', 'MD09G1291700' => 'mdo', 'MD11G1097500' => 'mdo', 'MD11G1097600' => 'mdo', 'MD12G1143900' => 'mdo', 'MD13G1191400' => 'mdo', 'MD16G1191500' => 'mdo', 'Medtr1g085570' => 'mtr', 'Medtr1g104610' => 'mtr', 'Medtr2g097520' => 'mtr', 'Medtr4g021800' => 'mtr', 'Medtr4g021825' => 'mtr', 'Medtr4g064270' => 'mtr', 'Medtr4g064380' => 'mtr', 'Medtr7g062150' => 'mtr', 'MELO3C003138.2' => 'cme', 'MELO3C005187.2' => 'cme', 'MELO3C009252.2' => 'cme', 'MELO3C014481.2' => 'cme', 'MELO3C020616.2' => 'cme', 'MELO3C020617.2' => 'cme', 'MELO3C020618.2' => 'cme', 'Migut.G00328' => 'egut', 'Migut.J00320' => 'egut', 'Migut.L01000' => 'egut', 'Migut.L01953' => 'egut', 'MSTRG.10253' => 'ama', 'MSTRG.19077' => 'ama', 'MSTRG.26780' => 'ama', 'MSTRG.4023' => 'ama', 'MSTRG.5655' => 'ama', 'MSTRG.9992' => 'ama', 'Nitab4.5_0000043g0310' => 'nta', 'Nitab4.5_0000463g0080' => 'nta', 'Nitab4.5_0000705g0170' => 'nta', 'Nitab4.5_0001326g0060' => 'nta', 'Nitab4.5_0001628g0030' => 'nta', 'Nitab4.5_0002103g0110' => 'nta', 'Nitab4.5_0002946g0030' => 'nta', 'Nitab4.5_0004639g0030' => 'nta', 'Nn2g11149' => 'nnu', 'Nn2g13389' => 'nnu', 'Nn4g25326' => 'nnu', 'Nn4g26290' => 'nnu', 'Nn5g29865' => 'nnu', 'Oeu004163.1' => 'oeu', 'Oeu006901.1' => 'oeu', 'Oeu010096.1' => 'oeu', 'Oeu024340.1' => 'oeu', 'Oeu048369.1' => 'oeu', 'Os01g0973000' => 'osa', 'Os03g0273800' => 'osa', 'Os03g0701200' => 'osa', 'Os03g0834050' => 'osa', 'Os07g0634400' => 'osa', 'Peaxi162Scf00092g01414' => 'pax', 'Peaxi162Scf00165g00818' => 'pax', 'Peaxi162Scf00309g00516' => 'pax', 'Peaxi162Scf00774g00218' => 'pax', 'PGR004G1824' => 'pgr', 'PGR004G2606' => 'pgr', 'PGR031G2716' => 'pgr', 'PGR102G2460' => 'pgr', 'PGR142G2599' => 'pgr', 'PGSC0003DMG400000843' => 'stu', 'PGSC0003DMG400008829' => 'stu', 'PGSC0003DMG400030418' => 'stu', 'PGSC0003DMG400031834' => 'stu', 'PGSC0003DMG401028300' => 'stu', 'PGSC0003DMG402028300' => 'stu', 'Phvul.001G219300' => 'pvu', 'Phvul.007G056000' => 'pvu', 'Phvul.007G208000' => 'pvu', 'Phvul.008G119500' => 'pvu', 'Phvul.010G011200' => 'pvu', 'Phvul.010G014800' => 'pvu', 'Phvul.011G062900' => 'pvu', 'Phvul.L007043' => 'pvu', 'Potri.001G242300' => 'ptr', 'Potri.002G185300' => 'ptr', 'Potri.006G086900' => 'ptr', 'Potri.008G151700' => 'ptr', 'Potri.009G033500' => 'ptr', 'Potri.010G089300' => 'ptr', 'Potri.014G110800' => 'ptr', 'Pp3c27_8130' => 'ppa', 'Pp3c6_27410' => 'ppa', 'PRCOL_00001659' => 'pco', 'PRCOL_00001927' => 'pco', 'PRCOL_00003649' => 'pco', 'Prupe.1G011600' => 'ppe', 'Prupe.3G000800' => 'ppe', 'Prupe.3G001100' => 'ppe', 'Prupe.6G072700' => 'ppe', 'Prupe.6G072800' => 'ppe', 'Prupe.6G257300' => 'ppe', 'Prupe.8G033000' => 'ppe', 'Psat0s2633g0080' => 'psa', 'Psat0s3396g0080' => 'psa', 'Psat0s3396g0200' => 'psa', 'Psat3g139080' => 'psa', 'Psat5g285080' => 'psa', 'Psat6g157760' => 'psa', 'Psat6g208440' => 'psa', 'Psat7g215320' => 'psa', 'Psat7g215400' => 'psa', 'Psat7g235600' => 'psa', 'Psat7g235760' => 'psa', 'PSO063G4603' => 'pso', 'PSO210G0182' => 'pso', 'PSO210G0196' => 'pso', 'PSO339G0394' => 'pso', 'PSO339G4127' => 'pso', 'PSO513G0064' => 'pso', 'PSO761G0079' => 'pso', 'QL01p031003' => 'qlo', 'QL01p031078' => 'qlo', 'QL06p003004' => 'qlo', 'QL07p048731' => 'qlo', 'QL09p037427' => 'qlo', 'RcHm_v2.0_Chr3g0466361' => 'rch', 'RcHm_v2.0_Chr3g0485571' => 'rch', 'RcHm_v2.0_Chr4g0416551' => 'rch', 'RcHm_v2.0_Chr5g0065831' => 'rch', 'Rhsim01G0230500' => 'rsi', 'Rhsim05G0194000' => 'rsi', 'Rhsim08G0250400' => 'rsi', 'Sabra02G0131000' => 'sbr', 'Sabra06G0066300' => 'sbr', 'Sabra08G0115500' => 'sbr', 'Sabra09G0023900' => 'sbr', 'Sabra10G0054000' => 'sbr', 'Sabra14G0081500' => 'sbr', 'Sabra16G0147100' => 'sbr', 'SalBow2G2957' => 'sbo', 'SalBow4G3320' => 'sbo', 'SalBow8G1894' => 'sbo', 'Sc07g0007950' => 'sci', 'Sc12g0001360' => 'sci', 'Sc13g0004330' => 'sci', 'Sc20g0005010' => 'sci', 'Sed0000361' => 'sed', 'Sed0001706' => 'sed', 'Sed0002422' => 'sed', 'Sed0004029' => 'sed', 'Sed0004602' => 'sed', 'Sed0004943' => 'sed', 'Sed0008646' => 'sed', 'Sed0023313' => 'sed', 'Sed0024843' => 'sed', 'SEGI_00081' => 'sgi', 'SEGI_00947' => 'sgi', 'SEGI_04046' => 'sgi', 'SEGI_06880' => 'sgi', 'SEGI_09736' => 'sgi', 'SEGI_12741' => 'sgi', 'SEGI_14530' => 'sgi', 'SEGI_20705' => 'sgi', 'SEGI_26088' => 'sgi', 'SEGI_28323' => 'sgi', 'SEGI_33343' => 'sgi', 'SGA_v2.0_scaffold126G33775' => 'sas', 'SGA_v2.0_scaffold2G01337' => 'sas', 'SGA_v2.0_scaffold38G15006' => 'sas', 'SGA_v2.0_scaffold39G15264' => 'sas', 'SGA_v2.0_scaffold453G51880' => 'sas', 'SHI12696' => 'shi', 'SMO367G1096' => 'smo', 'Solyc01g068630.3' => 'sly', 'Solyc05g011880.3' => 'sly', 'Solyc06g076300.3' => 'sly', 'Solyc09g010940.4' => 'sly', 'Solyc09g075890.3' => 'sly', 'Sopen01g030560' => 'spe', 'Sopen05g006630' => 'spe', 'Sopen06g032720' => 'spe', 'Sopen09g005660' => 'spe', 'Sopen09g030690' => 'spe', 'Sp4g14540' => 'spa', 'Sp4g20030' => 'spa', 'Sp5g01320' => 'spa', 'Sp6g21170' => 'spa', 'Sp6g21180' => 'spa', 'Sp6g21190' => 'spa', 'Sp6g40220' => 'spa', 'TAR362G0122' => 'tar', 'TAR362G1338' => 'tar', 'TAR369G0590' => 'tar', 'TAR371G0824' => 'tar', 'TAR622G1429' => 'tar', 'TAR623G0734' => 'tar', 'TAR625G0441' => 'tar', 'TAR629G0976' => 'tar', 'TAR633G1195' => 'tar', 'TAR636G2660' => 'tar', 'THA.LOC104799440' => 'tha', 'THA.LOC104800966' => 'tha', 'THA.LOC104806559' => 'tha', 'THA.LOC104810765' => 'tha', 'THA.LOC104816266' => 'tha', 'THA.LOC104817419' => 'tha', 'THA.LOC104827021' => 'tha', 'Thecc.01G327400' => 'tca', 'Thecc.04G229200' => 'tca', 'Thecc.05G037400' => 'tca', 'Thecc.09G318600' => 'tca', 'Thecc.09G318700' => 'tca', 'Thhalv10006238m.g' => 'esa', 'Thhalv10014321m.g' => 'esa', 'Thhalv10014335m.g' => 'esa', 'Thhalv10015826m.g' => 'esa', 'Thhalv10017107m.g' => 'esa', 'Thhalv10017180m.g' => 'esa', 'Thhalv10029339m.g' => 'esa', 'TPR.G1699' => 'tpr', 'TPR.G23609' => 'tpr', 'TPR.G3081' => 'tpr', 'TPR.G40397' => 'tpr', 'TPR.G5522' => 'tpr', 'TPR.G5618' => 'tpr', 'TPR.G5626' => 'tpr', 'TWI09G1632' => 'twi', 'TWI23G1230' => 'twi', 'TWI53G1064' => 'twi', 'TWI59G0751' => 'twi', 'TWI74G0947' => 'twi', 'TWI77G0337' => 'twi', 'TWI79G1254' => 'twi', 'unitig_0.g2341' => 'ugi', 'unitig_26.g10006' => 'ugi', 'unitig_26.g10008' => 'ugi', 'unitig_26.g9192' => 'ugi', 'vmacro14547' => 'vma', 'vmacro15333' => 'vma', 'vmacro18743' => 'vma', 'vmacro20166' => 'vma', 'VMungo0331G0523' => 'vmu', 'VMungo0331G1202' => 'vmu', 'VMungo0720G1228' => 'vmu', 'VMungo0720G1514' => 'vmu', 'VMungo1080G0169' => 'vmu', 'VMungo1127G1475' => 'vmu', 'VMungo1383G1208' => 'vmu', 'VMungo1383G1698' => 'vmu', 'Zm00001eb012270' => 'zma', 'Zm00001eb054100' => 'zma', 'Zm00001eb063350' => 'zma', 'Zm00001eb328560' => 'zma', 'Zm00001eb342820' => 'zma', 'Zm00001eb362210' => 'zma', 'Zm00001eb397730' => 'zma', 'Zm00001eb399750' => 'zma' ) $gf_id = 'HOM05D000959' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000959' ) $data_identifier = 'HOM05D000959' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 5, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 5, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 10, 'mbi' => (int) 3, 'mco' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 2, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 3, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 11, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399750' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000959', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '622', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p07100' => 'bna', 'A03p11720' => 'bna', 'A05p08300' => 'bna', 'A05p13380' => 'bna', 'A09p54130' => 'bna', 'A10p16690' => 'bna', 'A10p16700' => 'bna', 'A10p33390' => 'bna', 'Aa31LG10G16020' => 'aar', 'Aa31LG1G11810' => 'aar', 'Aa31LG1G11830' => 'aar', 'Aa31LG1G22510' => 'aar', 'Aa31LG5G4890' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5793' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2310' => 'aag', 'Actinidia08499' => 'ach', 'Actinidia11262' => 'ach', 'Actinidia23926' => 'ach', 'Actinidia34420' => 'ach', 'Actinidia36970' => 'ach', 'Ah.02g111220' => 'amhyb', 'Ah.15g097750' => 'amhyb', 'AL4G27500' => 'aly', 'AL6G11470' => 'aly', 'AL8G35950' => 'aly', 'AL8G35960' => 'aly', 'AL8G35970' => 'aly', 'Aqoxy1G00912' => 'aox', 'Aqoxy2G02253' => 'aox', 'Aqoxy2G02411' => 'aox', 'Aqoxy5G00485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BZ66YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K8ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM4FUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6BF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HFV7XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25JBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0YNNV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MAKK6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P70IT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP2Z6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V61LZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YWP64R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3S9AI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7PGHH' => 'arhy', 'AT2G32150' => 'ath', 'AT3G62040' => 'ath', 'AT5G02230' => 'ath', 'AT5G59480' => 'ath', 'AT5G59490' => 'ath', 'ATR0332G060' => 'atr', 'ATR0559G190' => 'atr', 'ATR0693G294' => 'atr', 'Atru.chr3.3975' => 'acertr', 'Atru.chr3.3976' => 'acertr', 'Atru.chr3.3977' => 'acertr', 'Atru.chr4.2498' => 'acertr', 'Atru.chr5.838' => 'acertr', 'Atru.chr8.1990' => 'acertr', 'Atru.chr8.1991' => 'acertr', 'Atru.chr8.1992' => 'acertr', 'AUR62001759' => 'cqu', 'AUR62009545' => 'cqu', 'AUR62010474' => 'cqu', 'AUR62025820' => 'cqu', 'AUR62030422' => 'cqu', 'AUR62033605' => 'cqu', 'AUR62038615' => 'cqu', 'AUR62041347' => 'cqu', 'BcaB01g04574' => 'bca', 'BcaB02g09263' => 'bca', 'BcaB02g10453' => 'bca', 'BcaB05g22513' => 'bca', 'BcaB08g36253' => 'bca', 'BcaB08g36254' => 'bca', 'BcaC01g06519' => 'bca', 'BcaC02g11889' => 'bca', 'BcaC03g14010' => 'bca', 'BcaC03g18439' => 'bca', 'BcaC04g19765' => 'bca', 'BcaC09g48432' => 'bca', 'BcaNung07302' => 'bca', 'BolC2t06040H' => 'bol', 'BolC2t07346H' => 'bol', 'BolC3t13817H' => 'bol', 'BolC4t22625H' => 'bol', 'BolC4t23297H' => 'bol', 'BolC8t51278H' => 'bol', 'BolC9t58050H' => 'bol', 'BolC9t58051H' => 'bol', 'BolC9t60163H' => 'bol', 'BraA02t04712Z' => 'bra', 'BraA02t05791Z' => 'bra', 'BraA03t10483Z' => 'bra', 'BraA05t19795Z' => 'bra', 'BraA05t20276Z' => 'bra', 'BraA09t40827Z' => 'bra', 'BraA10t43750Z' => 'bra', 'BraA10t43751Z' => 'bra', 'BraA10t45370Z' => 'bra', 'C02p00400' => 'bna', 'C02p12460' => 'bna', 'C03p13680' => 'bna', 'C04p10270' => 'bna', 'C04p17500' => 'bna', 'C08p37010' => 'bna', 'C09p51880' => 'bna', 'C09p51890' => 'bna', 'C09p74300' => 'bna', 'CAN.G179.26' => 'can', 'CAN.G3384.1' => 'can', 'CAN.G394.68' => 'can', 'CAN.G907.13' => 'can', 'CANSAT11G0012' => 'cansat', 'CANSAT25G1586' => 'cansat', 'CANSAT35G0735' => 'cansat', 'CANSAT54G0556' => 'cansat', 'CANSAT64G0356' => 'cansat', 'CANSAT78G2042' => 'cansat', 'CARHR125920' => 'chi', 'CARHR131910' => 'chi', 'CARHR172390' => 'chi', 'CARHR211140' => 'chi', 'CARHR285850' => 'chi', 'CARHR285860' => 'chi', 'Carub.0004s1347' => 'cru', 'Carub.0004s1960' => 'cru', 'Carub.0005s2880' => 'cru', 'Carub.0006s0107' => 'cru', 'Carub.0008s2015' => 'cru', 'Carub.0008s2016' => 'cru', 'Carub.0008s2017' => 'cru', 'Ca_01315_v3' => 'car', 'Ca_05063_v3' => 'car', 'Ca_10231_v3' => 'car', 'Ca_10913_v3' => 'car', 'Ca_19156_v3' => 'car', 'Ca_23644_v3' => 'car', 'Ca_26735_v3' => 'car', 'Cc01_g13130' => 'ccan', 'Cc02_g21690' => 'ccan', 'Cc03_g03600' => 'ccan', 'Cc06_g02510' => 'ccan', 'CDE02G1265' => 'cde', 'CDE05G0415' => 'cde', 'CDE08G1082' => 'cde', 'Cfa005780' => 'cfa', 'Cfa011522' => 'cfa', 'Cfa011523' => 'cfa', 'Cfa015627' => 'cfa', 'Cfa017359' => 'cfa', 'Ciclev10005687m.g' => 'ccl', 'Ciclev10012173m.g' => 'ccl', 'Ciclev10021621m.g' => 'ccl', 'Ciclev10028968m.g' => 'ccl', 'Ciclev10029907m.g' => 'ccl', 'CiPaw.01G164800' => 'cil', 'CiPaw.07G083700' => 'cil', 'CiPaw.07G127000' => 'cil', 'CiPaw.07G136900' => 'cil', 'CiPaw.08G081700' => 'cil', 'CiPaw.09G194600' => 'cil', 'CiPaw.10G146500' => 'cil', 'CiPaw.13G091500' => 'cil', 'CiPaw.13G091600' => 'cil', 'ClCG00G003390' => 'cla', 'ClCG01G007220' => 'cla', 'ClCG03G001370' => 'cla', 'ClCG04G008100' => 'cla', 'ClCG06G006110' => 'cla', 'ClCG06G006130' => 'cla', 'ClCG10G021210' => 'cla', 'COL.COLO4_07648' => 'col', 'COL.COLO4_07650' => 'col', 'COL.COLO4_07651' => 'col', 'COL.COLO4_14780' => 'col', 'COL.COLO4_18546' => 'col', 'COL.COLO4_18547' => 'col', 'COL.COLO4_23103' => 'col', 'COL.COLO4_30419' => 'col', 'COL.COLO4_34232' => 'col', 'Cpa.g.sc169.20' => 'cpa', 'Cpa.g.sc57.45' => 'cpa', 'Cpa.g.sc58.124' => 'cpa', 'Cpa.g.sc58.125' => 'cpa', 'Cpa.g.sc81.118' => 'cpa', 'Cpa.g.sc81.119' => 'cpa', 'Cre12.g524700' => 'cre', 'CsaV3_1G034430' => 'csa', 'CsaV3_1G034440' => 'csa', 'CsaV3_1G034450' => 'csa', 'CsaV3_3G034830' => 'csa', 'CsaV3_4G025090' => 'csa', 'CsaV3_5G018660' => 'csa', 'CsaV3_6G038160' => 'csa', 'CSS0003447' => 'camsi', 'CSS0017840' => 'camsi', 'CSS0019260' => 'camsi', 'CSS0040375' => 'camsi', 'CSS0042533' => 'camsi', 'DCAR_005960' => 'dca', 'DCAR_012104' => 'dca', 'DCAR_012105' => 'dca', 'DCAR_012293' => 'dca', 'DCAR_015632' => 'dca', 'DCAR_024602' => 'dca', 'DCAR_028752' => 'dca', 'Dinv06261' => 'din', 'Dinv13982' => 'din', 'Dinv17029' => 'din', 'Dinv18463' => 'din', 'Dinv33181' => 'din', 'Dinv35585' => 'din', 'Dinv37161' => 'din', 'Dinv42977' => 'din', 'Dinv43122' => 'din', 'Dinv44517' => 'din', 'Duzib093G0256' => 'dzi', 'Duzib106G1254' => 'dzi', 'Duzib128G1789' => 'dzi', 'Duzib133G0633' => 'dzi', 'Duzib138G0510' => 'dzi', 'Duzib150G1084' => 'dzi', 'Duzib168G0488' => 'dzi', 'Duzib168G1523' => 'dzi', 'Duzib170G0133' => 'dzi', 'ECA234G1433' => 'eca', 'ECA236G1432' => 'eca', 'ECA236G2256' => 'eca', 'ECA236G2365' => 'eca', 'ECA236G4830' => 'eca', 'ECA248G1505' => 'eca', 'EL10Ac3g06431' => 'bvu', 'EL10Ac5g12577' => 'bvu', 'EL10Ac6g13533' => 'bvu', 'EL10Ac7g16045' => 'bvu', 'Eucgr.A01281' => 'egr', 'Eucgr.B02326' => 'egr', 'Eucgr.H03532' => 'egr', 'Eucgr.K00553' => 'egr', 'Eucgr.K03116' => 'egr', 'FAN02G3963' => 'fan', 'FAN05G0438' => 'fan', 'FAN09G2434' => 'fan', 'FAN12G3984' => 'fan', 'FAN14G0798' => 'fan', 'FAN17G0652' => 'fan', 'FAN19G1988' => 'fan', 'FAN22G0632' => 'fan', 'FAN23G0387' => 'fan', 'FAN26G1323' => 'fan', 'FAN28G0666' => 'fan', 'FvH4_1g26080' => 'fve', 'FvH4_3g36780' => 'fve', 'FvH4_4g15270' => 'fve', 'FvH4_6g13490' => 'fve', 'Glyma.01G098700' => 'gma', 'Glyma.03G065900' => 'gma', 'Glyma.03G073754' => 'gma', 'Glyma.03G073758' => 'gma', 'Glyma.03G083200' => 'gma', 'Glyma.03G225500' => 'gma', 'Glyma.05G037766' => 'gma', 'Glyma.07G133500' => 'gma', 'Glyma.10G139400' => 'gma', 'Glyma.10G248900' => 'gma', 'Glyma.11G137800' => 'gma', 'Glyma.12G061300' => 'gma', 'Glyma.13G337900' => 'gma', 'Glyma.15G036600' => 'gma', 'Glyma.18G182800' => 'gma', 'Glyma.19G222500' => 'gma', 'Glyma.20G144800' => 'gma', 'Gohir.A01G222000' => 'ghi', 'Gohir.A03G044000' => 'ghi', 'Gohir.A03G044100' => 'ghi', 'Gohir.A04G083100' => 'ghi', 'Gohir.A07G127200' => 'ghi', 'Gohir.A07G132400' => 'ghi', 'Gohir.A08G000700' => 'ghi', 'Gohir.A11G327300' => 'ghi', 'Gohir.D01G211500' => 'ghi', 'Gohir.D03G123400' => 'ghi', 'Gohir.D03G123500' => 'ghi', 'Gohir.D04G121800' => 'ghi', 'Gohir.D07G131500' => 'ghi', 'Gohir.D07G136600' => 'ghi', 'Gohir.D08G011600' => 'ghi', 'Gohir.D11G346200' => 'ghi', 'Gorai.001G142800' => 'gra', 'Gorai.001G148700' => 'gra', 'Gorai.002G257300' => 'gra', 'Gorai.003G130000' => 'gra', 'Gorai.003G130100' => 'gra', 'Gorai.004G005300' => 'gra', 'Gorai.007G376500' => 'gra', 'Gorai.012G104700' => 'gra', 'GSVIVG01017946001' => 'vvi', 'GSVIVG01024928001' => 'vvi', 'GSVIVG01028227001' => 'vvi', 'GSVIVG01034151001' => 'vvi', 'HanXRQChr05g0135031' => 'han', 'HanXRQChr05g0135041' => 'han', 'HanXRQChr05g0140021' => 'han', 'HanXRQChr06g0178981' => 'han', 'HanXRQChr07g0188251' => 'han', 'HanXRQChr08g0235311' => 'han', 'HanXRQChr09g0271011' => 'han', 'HanXRQChr10g0293321' => 'han', 'HanXRQChr13g0388171' => 'han', 'Haze_00916' => 'cav', 'Haze_05063' => 'cav', 'Haze_20814' => 'cav', 'Haze_24128' => 'cav', 'Hma1.2p1_0745F.1_g212010' => 'hma', 'Hma1.2p1_0757F.1_g213260' => 'hma', 'Hma1.2p1_0936F.1_g238840' => 'hma', 'Hma1.2p1_1735F.1_g299890' => 'hma', 'Hma1.2p1_1861F.1_g305685' => 'hma', 'HPP92_003397' => 'vpl', 'HPP92_012597' => 'vpl', 'HPP92_015520' => 'vpl', 'HPP92_015539' => 'vpl', 'HPP92_020373' => 'vpl', 'Hund04938' => 'sun', 'Hund10677' => 'sun', 'Hund11033' => 'sun', 'Hund12155' => 'sun', 'Lalb_Chr01g0022551' => 'lal', 'Lalb_Chr03g0042341' => 'lal', 'Lalb_Chr07g0192931' => 'lal', 'Lalb_Chr12g0209551' => 'lal', 'Lalb_Chr19g0125251' => 'lal', 'Lalb_Chr19g0137891' => 'lal', 'Lalb_Chr21g0304641' => 'lal', 'Lalb_Chr21g0309881' => 'lal', 'Lj1A5T12' => 'lonja', 'Lj1C148G10' => 'lonja', 'Lj2A93T83' => 'lonja', 'Lj3A738G68' => 'lonja', 'Lj3C966T1' => 'lonja', 'Lj3g0018958' => 'lja', 'Lj3g0021831' => 'lja', 'Lj3g0025443' => 'lja', 'Lj4g0026809' => 'lja', 'Lj5g0012558' => 'lja', 'Lj5g0021586' => 'lja', 'Lsat_1_v5_gn_5_156840' => 'lsa', 'Lsat_1_v5_gn_8_73460' => 'lsa', 'Lsat_1_v5_gn_8_73481' => 'lsa', 'Lsat_1_v5_gn_9_31601' => 'lsa', 'Lsat_1_v5_gn_9_77320' => 'lsa', 'Manes.01G171300' => 'mes', 'Manes.01G171400' => 'mes', 'Manes.01G236100' => 'mes', 'Manes.02G130500' => 'mes', 'Manes.02G130600' => 'mes', 'Manes.03G180200' => 'mes', 'Manes.05G007000' => 'mes', 'Manes.08G084400' => 'mes', 'Manes.09G092600' => 'mes', 'Manes.15G027900' => 'mes', 'MBI04_g40948_MAGBIO' => 'mbi', 'MBI14_g12123_MAGBIO' => 'mbi', 'MBI18_g28915_MAGBIO' => 'mbi', 'MCO09G053' => 'mco', 'MCO11G782' => 'mco', 'MCO15G215' => 'mco', 'MD03G1088500' => 'mdo', 'MD03G1088600' => 'mdo', 'MD04G1130800' => 'mdo', 'MD09G1291700' => 'mdo', 'MD11G1097500' => 'mdo', 'MD11G1097600' => 'mdo', 'MD12G1143900' => 'mdo', 'MD13G1191400' => 'mdo', 'MD16G1191500' => 'mdo', 'Medtr1g085570' => 'mtr', 'Medtr1g104610' => 'mtr', 'Medtr2g097520' => 'mtr', 'Medtr4g021800' => 'mtr', 'Medtr4g021825' => 'mtr', 'Medtr4g064270' => 'mtr', 'Medtr4g064380' => 'mtr', 'Medtr7g062150' => 'mtr', 'MELO3C003138.2' => 'cme', 'MELO3C005187.2' => 'cme', 'MELO3C009252.2' => 'cme', 'MELO3C014481.2' => 'cme', 'MELO3C020616.2' => 'cme', 'MELO3C020617.2' => 'cme', 'MELO3C020618.2' => 'cme', 'Migut.G00328' => 'egut', 'Migut.J00320' => 'egut', 'Migut.L01000' => 'egut', 'Migut.L01953' => 'egut', 'MSTRG.10253' => 'ama', 'MSTRG.19077' => 'ama', 'MSTRG.26780' => 'ama', 'MSTRG.4023' => 'ama', 'MSTRG.5655' => 'ama', 'MSTRG.9992' => 'ama', 'Nitab4.5_0000043g0310' => 'nta', 'Nitab4.5_0000463g0080' => 'nta', 'Nitab4.5_0000705g0170' => 'nta', 'Nitab4.5_0001326g0060' => 'nta', 'Nitab4.5_0001628g0030' => 'nta', 'Nitab4.5_0002103g0110' => 'nta', 'Nitab4.5_0002946g0030' => 'nta', 'Nitab4.5_0004639g0030' => 'nta', 'Nn2g11149' => 'nnu', 'Nn2g13389' => 'nnu', 'Nn4g25326' => 'nnu', 'Nn4g26290' => 'nnu', 'Nn5g29865' => 'nnu', 'Oeu004163.1' => 'oeu', 'Oeu006901.1' => 'oeu', 'Oeu010096.1' => 'oeu', 'Oeu024340.1' => 'oeu', 'Oeu048369.1' => 'oeu', 'Os01g0973000' => 'osa', 'Os03g0273800' => 'osa', 'Os03g0701200' => 'osa', 'Os03g0834050' => 'osa', 'Os07g0634400' => 'osa', 'Peaxi162Scf00092g01414' => 'pax', 'Peaxi162Scf00165g00818' => 'pax', 'Peaxi162Scf00309g00516' => 'pax', 'Peaxi162Scf00774g00218' => 'pax', 'PGR004G1824' => 'pgr', 'PGR004G2606' => 'pgr', 'PGR031G2716' => 'pgr', 'PGR102G2460' => 'pgr', 'PGR142G2599' => 'pgr', 'PGSC0003DMG400000843' => 'stu', 'PGSC0003DMG400008829' => 'stu', 'PGSC0003DMG400030418' => 'stu', 'PGSC0003DMG400031834' => 'stu', 'PGSC0003DMG401028300' => 'stu', 'PGSC0003DMG402028300' => 'stu', 'Phvul.001G219300' => 'pvu', 'Phvul.007G056000' => 'pvu', 'Phvul.007G208000' => 'pvu', 'Phvul.008G119500' => 'pvu', 'Phvul.010G011200' => 'pvu', 'Phvul.010G014800' => 'pvu', 'Phvul.011G062900' => 'pvu', 'Phvul.L007043' => 'pvu', 'Potri.001G242300' => 'ptr', 'Potri.002G185300' => 'ptr', 'Potri.006G086900' => 'ptr', 'Potri.008G151700' => 'ptr', 'Potri.009G033500' => 'ptr', 'Potri.010G089300' => 'ptr', 'Potri.014G110800' => 'ptr', 'Pp3c27_8130' => 'ppa', 'Pp3c6_27410' => 'ppa', 'PRCOL_00001659' => 'pco', 'PRCOL_00001927' => 'pco', 'PRCOL_00003649' => 'pco', 'Prupe.1G011600' => 'ppe', 'Prupe.3G000800' => 'ppe', 'Prupe.3G001100' => 'ppe', 'Prupe.6G072700' => 'ppe', 'Prupe.6G072800' => 'ppe', 'Prupe.6G257300' => 'ppe', 'Prupe.8G033000' => 'ppe', 'Psat0s2633g0080' => 'psa', 'Psat0s3396g0080' => 'psa', 'Psat0s3396g0200' => 'psa', 'Psat3g139080' => 'psa', 'Psat5g285080' => 'psa', 'Psat6g157760' => 'psa', 'Psat6g208440' => 'psa', 'Psat7g215320' => 'psa', 'Psat7g215400' => 'psa', 'Psat7g235600' => 'psa', 'Psat7g235760' => 'psa', 'PSO063G4603' => 'pso', 'PSO210G0182' => 'pso', 'PSO210G0196' => 'pso', 'PSO339G0394' => 'pso', 'PSO339G4127' => 'pso', 'PSO513G0064' => 'pso', 'PSO761G0079' => 'pso', 'QL01p031003' => 'qlo', 'QL01p031078' => 'qlo', 'QL06p003004' => 'qlo', 'QL07p048731' => 'qlo', 'QL09p037427' => 'qlo', 'RcHm_v2.0_Chr3g0466361' => 'rch', 'RcHm_v2.0_Chr3g0485571' => 'rch', 'RcHm_v2.0_Chr4g0416551' => 'rch', 'RcHm_v2.0_Chr5g0065831' => 'rch', 'Rhsim01G0230500' => 'rsi', 'Rhsim05G0194000' => 'rsi', 'Rhsim08G0250400' => 'rsi', 'Sabra02G0131000' => 'sbr', 'Sabra06G0066300' => 'sbr', 'Sabra08G0115500' => 'sbr', 'Sabra09G0023900' => 'sbr', 'Sabra10G0054000' => 'sbr', 'Sabra14G0081500' => 'sbr', 'Sabra16G0147100' => 'sbr', 'SalBow2G2957' => 'sbo', 'SalBow4G3320' => 'sbo', 'SalBow8G1894' => 'sbo', 'Sc07g0007950' => 'sci', 'Sc12g0001360' => 'sci', 'Sc13g0004330' => 'sci', 'Sc20g0005010' => 'sci', 'Sed0000361' => 'sed', 'Sed0001706' => 'sed', 'Sed0002422' => 'sed', 'Sed0004029' => 'sed', 'Sed0004602' => 'sed', 'Sed0004943' => 'sed', 'Sed0008646' => 'sed', 'Sed0023313' => 'sed', 'Sed0024843' => 'sed', 'SEGI_00081' => 'sgi', 'SEGI_00947' => 'sgi', 'SEGI_04046' => 'sgi', 'SEGI_06880' => 'sgi', 'SEGI_09736' => 'sgi', 'SEGI_12741' => 'sgi', 'SEGI_14530' => 'sgi', 'SEGI_20705' => 'sgi', 'SEGI_26088' => 'sgi', 'SEGI_28323' => 'sgi', 'SEGI_33343' => 'sgi', 'SGA_v2.0_scaffold126G33775' => 'sas', 'SGA_v2.0_scaffold2G01337' => 'sas', 'SGA_v2.0_scaffold38G15006' => 'sas', 'SGA_v2.0_scaffold39G15264' => 'sas', 'SGA_v2.0_scaffold453G51880' => 'sas', 'SHI12696' => 'shi', 'SMO367G1096' => 'smo', 'Solyc01g068630.3' => 'sly', 'Solyc05g011880.3' => 'sly', 'Solyc06g076300.3' => 'sly', 'Solyc09g010940.4' => 'sly', 'Solyc09g075890.3' => 'sly', 'Sopen01g030560' => 'spe', 'Sopen05g006630' => 'spe', 'Sopen06g032720' => 'spe', 'Sopen09g005660' => 'spe', 'Sopen09g030690' => 'spe', 'Sp4g14540' => 'spa', 'Sp4g20030' => 'spa', 'Sp5g01320' => 'spa', 'Sp6g21170' => 'spa', 'Sp6g21180' => 'spa', 'Sp6g21190' => 'spa', 'Sp6g40220' => 'spa', 'TAR362G0122' => 'tar', 'TAR362G1338' => 'tar', 'TAR369G0590' => 'tar', 'TAR371G0824' => 'tar', 'TAR622G1429' => 'tar', 'TAR623G0734' => 'tar', 'TAR625G0441' => 'tar', 'TAR629G0976' => 'tar', 'TAR633G1195' => 'tar', 'TAR636G2660' => 'tar', 'THA.LOC104799440' => 'tha', 'THA.LOC104800966' => 'tha', 'THA.LOC104806559' => 'tha', 'THA.LOC104810765' => 'tha', 'THA.LOC104816266' => 'tha', 'THA.LOC104817419' => 'tha', 'THA.LOC104827021' => 'tha', 'Thecc.01G327400' => 'tca', 'Thecc.04G229200' => 'tca', 'Thecc.05G037400' => 'tca', 'Thecc.09G318600' => 'tca', 'Thecc.09G318700' => 'tca', 'Thhalv10006238m.g' => 'esa', 'Thhalv10014321m.g' => 'esa', 'Thhalv10014335m.g' => 'esa', 'Thhalv10015826m.g' => 'esa', 'Thhalv10017107m.g' => 'esa', 'Thhalv10017180m.g' => 'esa', 'Thhalv10029339m.g' => 'esa', 'TPR.G1699' => 'tpr', 'TPR.G23609' => 'tpr', 'TPR.G3081' => 'tpr', 'TPR.G40397' => 'tpr', 'TPR.G5522' => 'tpr', 'TPR.G5618' => 'tpr', 'TPR.G5626' => 'tpr', 'TWI09G1632' => 'twi', 'TWI23G1230' => 'twi', 'TWI53G1064' => 'twi', 'TWI59G0751' => 'twi', 'TWI74G0947' => 'twi', 'TWI77G0337' => 'twi', 'TWI79G1254' => 'twi', 'unitig_0.g2341' => 'ugi', 'unitig_26.g10006' => 'ugi', 'unitig_26.g10008' => 'ugi', 'unitig_26.g9192' => 'ugi', 'vmacro14547' => 'vma', 'vmacro15333' => 'vma', 'vmacro18743' => 'vma', 'vmacro20166' => 'vma', 'VMungo0331G0523' => 'vmu', 'VMungo0331G1202' => 'vmu', 'VMungo0720G1228' => 'vmu', 'VMungo0720G1514' => 'vmu', 'VMungo1080G0169' => 'vmu', 'VMungo1127G1475' => 'vmu', 'VMungo1383G1208' => 'vmu', 'VMungo1383G1698' => 'vmu', 'Zm00001eb012270' => 'zma', 'Zm00001eb054100' => 'zma', 'Zm00001eb063350' => 'zma', 'Zm00001eb328560' => 'zma', 'Zm00001eb342820' => 'zma', 'Zm00001eb362210' => 'zma', 'Zm00001eb397730' => 'zma', 'Zm00001eb399750' => 'zma' ), 'gf_id' => 'HOM05D000959', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000959' ), 'data_identifier' => 'HOM05D000959', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000959', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '622', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p07100' => 'bna', 'A03p11720' => 'bna', 'A05p08300' => 'bna', 'A05p13380' => 'bna', 'A09p54130' => 'bna', 'A10p16690' => 'bna', 'A10p16700' => 'bna', 'A10p33390' => 'bna', 'Aa31LG10G16020' => 'aar', 'Aa31LG1G11810' => 'aar', 'Aa31LG1G11830' => 'aar', 'Aa31LG1G22510' => 'aar', 'Aa31LG5G4890' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5793' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2310' => 'aag', 'Actinidia08499' => 'ach', 'Actinidia11262' => 'ach', 'Actinidia23926' => 'ach', 'Actinidia34420' => 'ach', 'Actinidia36970' => 'ach', 'Ah.02g111220' => 'amhyb', 'Ah.15g097750' => 'amhyb', 'AL4G27500' => 'aly', 'AL6G11470' => 'aly', 'AL8G35950' => 'aly', 'AL8G35960' => 'aly', 'AL8G35970' => 'aly', 'Aqoxy1G00912' => 'aox', 'Aqoxy2G02253' => 'aox', 'Aqoxy2G02411' => 'aox', 'Aqoxy5G00485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BZ66YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K8ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM4FUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6BF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HFV7XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25JBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0YNNV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MAKK6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P70IT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP2Z6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V61LZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YWP64R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3S9AI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7PGHH' => 'arhy', 'AT2G32150' => 'ath', 'AT3G62040' => 'ath', 'AT5G02230' => 'ath', 'AT5G59480' => 'ath', 'AT5G59490' => 'ath', 'ATR0332G060' => 'atr', 'ATR0559G190' => 'atr', 'ATR0693G294' => 'atr', 'Atru.chr3.3975' => 'acertr', 'Atru.chr3.3976' => 'acertr', 'Atru.chr3.3977' => 'acertr', 'Atru.chr4.2498' => 'acertr', 'Atru.chr5.838' => 'acertr', 'Atru.chr8.1990' => 'acertr', 'Atru.chr8.1991' => 'acertr', 'Atru.chr8.1992' => 'acertr', 'AUR62001759' => 'cqu', 'AUR62009545' => 'cqu', 'AUR62010474' => 'cqu', 'AUR62025820' => 'cqu', 'AUR62030422' => 'cqu', 'AUR62033605' => 'cqu', 'AUR62038615' => 'cqu', 'AUR62041347' => 'cqu', 'BcaB01g04574' => 'bca', 'BcaB02g09263' => 'bca', 'BcaB02g10453' => 'bca', 'BcaB05g22513' => 'bca', 'BcaB08g36253' => 'bca', 'BcaB08g36254' => 'bca', 'BcaC01g06519' => 'bca', 'BcaC02g11889' => 'bca', 'BcaC03g14010' => 'bca', 'BcaC03g18439' => 'bca', 'BcaC04g19765' => 'bca', 'BcaC09g48432' => 'bca', 'BcaNung07302' => 'bca', 'BolC2t06040H' => 'bol', 'BolC2t07346H' => 'bol', 'BolC3t13817H' => 'bol', 'BolC4t22625H' => 'bol', 'BolC4t23297H' => 'bol', 'BolC8t51278H' => 'bol', 'BolC9t58050H' => 'bol', 'BolC9t58051H' => 'bol', 'BolC9t60163H' => 'bol', 'BraA02t04712Z' => 'bra', 'BraA02t05791Z' => 'bra', 'BraA03t10483Z' => 'bra', 'BraA05t19795Z' => 'bra', 'BraA05t20276Z' => 'bra', 'BraA09t40827Z' => 'bra', 'BraA10t43750Z' => 'bra', 'BraA10t43751Z' => 'bra', 'BraA10t45370Z' => 'bra', 'C02p00400' => 'bna', 'C02p12460' => 'bna', 'C03p13680' => 'bna', 'C04p10270' => 'bna', 'C04p17500' => 'bna', 'C08p37010' => 'bna', 'C09p51880' => 'bna', 'C09p51890' => 'bna', 'C09p74300' => 'bna', 'CAN.G179.26' => 'can', 'CAN.G3384.1' => 'can', 'CAN.G394.68' => 'can', 'CAN.G907.13' => 'can', 'CANSAT11G0012' => 'cansat', 'CANSAT25G1586' => 'cansat', 'CANSAT35G0735' => 'cansat', 'CANSAT54G0556' => 'cansat', 'CANSAT64G0356' => 'cansat', 'CANSAT78G2042' => 'cansat', 'CARHR125920' => 'chi', 'CARHR131910' => 'chi', 'CARHR172390' => 'chi', 'CARHR211140' => 'chi', 'CARHR285850' => 'chi', 'CARHR285860' => 'chi', 'Carub.0004s1347' => 'cru', 'Carub.0004s1960' => 'cru', 'Carub.0005s2880' => 'cru', 'Carub.0006s0107' => 'cru', 'Carub.0008s2015' => 'cru', 'Carub.0008s2016' => 'cru', 'Carub.0008s2017' => 'cru', 'Ca_01315_v3' => 'car', 'Ca_05063_v3' => 'car', 'Ca_10231_v3' => 'car', 'Ca_10913_v3' => 'car', 'Ca_19156_v3' => 'car', 'Ca_23644_v3' => 'car', 'Ca_26735_v3' => 'car', 'Cc01_g13130' => 'ccan', 'Cc02_g21690' => 'ccan', 'Cc03_g03600' => 'ccan', 'Cc06_g02510' => 'ccan', 'CDE02G1265' => 'cde', 'CDE05G0415' => 'cde', 'CDE08G1082' => 'cde', 'Cfa005780' => 'cfa', 'Cfa011522' => 'cfa', 'Cfa011523' => 'cfa', 'Cfa015627' => 'cfa', 'Cfa017359' => 'cfa', 'Ciclev10005687m.g' => 'ccl', 'Ciclev10012173m.g' => 'ccl', 'Ciclev10021621m.g' => 'ccl', 'Ciclev10028968m.g' => 'ccl', 'Ciclev10029907m.g' => 'ccl', 'CiPaw.01G164800' => 'cil', 'CiPaw.07G083700' => 'cil', 'CiPaw.07G127000' => 'cil', 'CiPaw.07G136900' => 'cil', 'CiPaw.08G081700' => 'cil', 'CiPaw.09G194600' => 'cil', 'CiPaw.10G146500' => 'cil', 'CiPaw.13G091500' => 'cil', 'CiPaw.13G091600' => 'cil', 'ClCG00G003390' => 'cla', 'ClCG01G007220' => 'cla', 'ClCG03G001370' => 'cla', 'ClCG04G008100' => 'cla', 'ClCG06G006110' => 'cla', 'ClCG06G006130' => 'cla', 'ClCG10G021210' => 'cla', 'COL.COLO4_07648' => 'col', 'COL.COLO4_07650' => 'col', 'COL.COLO4_07651' => 'col', 'COL.COLO4_14780' => 'col', 'COL.COLO4_18546' => 'col', 'COL.COLO4_18547' => 'col', 'COL.COLO4_23103' => 'col', 'COL.COLO4_30419' => 'col', 'COL.COLO4_34232' => 'col', 'Cpa.g.sc169.20' => 'cpa', 'Cpa.g.sc57.45' => 'cpa', 'Cpa.g.sc58.124' => 'cpa', 'Cpa.g.sc58.125' => 'cpa', 'Cpa.g.sc81.118' => 'cpa', 'Cpa.g.sc81.119' => 'cpa', 'Cre12.g524700' => 'cre', 'CsaV3_1G034430' => 'csa', 'CsaV3_1G034440' => 'csa', 'CsaV3_1G034450' => 'csa', 'CsaV3_3G034830' => 'csa', 'CsaV3_4G025090' => 'csa', 'CsaV3_5G018660' => 'csa', 'CsaV3_6G038160' => 'csa', 'CSS0003447' => 'camsi', 'CSS0017840' => 'camsi', 'CSS0019260' => 'camsi', 'CSS0040375' => 'camsi', 'CSS0042533' => 'camsi', 'DCAR_005960' => 'dca', 'DCAR_012104' => 'dca', 'DCAR_012105' => 'dca', 'DCAR_012293' => 'dca', 'DCAR_015632' => 'dca', 'DCAR_024602' => 'dca', 'DCAR_028752' => 'dca', 'Dinv06261' => 'din', 'Dinv13982' => 'din', 'Dinv17029' => 'din', 'Dinv18463' => 'din', 'Dinv33181' => 'din', 'Dinv35585' => 'din', 'Dinv37161' => 'din', 'Dinv42977' => 'din', 'Dinv43122' => 'din', 'Dinv44517' => 'din', 'Duzib093G0256' => 'dzi', 'Duzib106G1254' => 'dzi', 'Duzib128G1789' => 'dzi', 'Duzib133G0633' => 'dzi', 'Duzib138G0510' => 'dzi', 'Duzib150G1084' => 'dzi', 'Duzib168G0488' => 'dzi', 'Duzib168G1523' => 'dzi', 'Duzib170G0133' => 'dzi', 'ECA234G1433' => 'eca', 'ECA236G1432' => 'eca', 'ECA236G2256' => 'eca', 'ECA236G2365' => 'eca', 'ECA236G4830' => 'eca', 'ECA248G1505' => 'eca', 'EL10Ac3g06431' => 'bvu', 'EL10Ac5g12577' => 'bvu', 'EL10Ac6g13533' => 'bvu', 'EL10Ac7g16045' => 'bvu', 'Eucgr.A01281' => 'egr', 'Eucgr.B02326' => 'egr', 'Eucgr.H03532' => 'egr', 'Eucgr.K00553' => 'egr', 'Eucgr.K03116' => 'egr', 'FAN02G3963' => 'fan', 'FAN05G0438' => 'fan', 'FAN09G2434' => 'fan', 'FAN12G3984' => 'fan', 'FAN14G0798' => 'fan', 'FAN17G0652' => 'fan', 'FAN19G1988' => 'fan', 'FAN22G0632' => 'fan', 'FAN23G0387' => 'fan', 'FAN26G1323' => 'fan', 'FAN28G0666' => 'fan', 'FvH4_1g26080' => 'fve', 'FvH4_3g36780' => 'fve', 'FvH4_4g15270' => 'fve', 'FvH4_6g13490' => 'fve', 'Glyma.01G098700' => 'gma', 'Glyma.03G065900' => 'gma', 'Glyma.03G073754' => 'gma', 'Glyma.03G073758' => 'gma', 'Glyma.03G083200' => 'gma', 'Glyma.03G225500' => 'gma', 'Glyma.05G037766' => 'gma', 'Glyma.07G133500' => 'gma', 'Glyma.10G139400' => 'gma', 'Glyma.10G248900' => 'gma', 'Glyma.11G137800' => 'gma', 'Glyma.12G061300' => 'gma', 'Glyma.13G337900' => 'gma', 'Glyma.15G036600' => 'gma', 'Glyma.18G182800' => 'gma', 'Glyma.19G222500' => 'gma', 'Glyma.20G144800' => 'gma', 'Gohir.A01G222000' => 'ghi', 'Gohir.A03G044000' => 'ghi', 'Gohir.A03G044100' => 'ghi', 'Gohir.A04G083100' => 'ghi', 'Gohir.A07G127200' => 'ghi', 'Gohir.A07G132400' => 'ghi', 'Gohir.A08G000700' => 'ghi', 'Gohir.A11G327300' => 'ghi', 'Gohir.D01G211500' => 'ghi', 'Gohir.D03G123400' => 'ghi', 'Gohir.D03G123500' => 'ghi', 'Gohir.D04G121800' => 'ghi', 'Gohir.D07G131500' => 'ghi', 'Gohir.D07G136600' => 'ghi', 'Gohir.D08G011600' => 'ghi', 'Gohir.D11G346200' => 'ghi', 'Gorai.001G142800' => 'gra', 'Gorai.001G148700' => 'gra', 'Gorai.002G257300' => 'gra', 'Gorai.003G130000' => 'gra', 'Gorai.003G130100' => 'gra', 'Gorai.004G005300' => 'gra', 'Gorai.007G376500' => 'gra', 'Gorai.012G104700' => 'gra', 'GSVIVG01017946001' => 'vvi', 'GSVIVG01024928001' => 'vvi', 'GSVIVG01028227001' => 'vvi', 'GSVIVG01034151001' => 'vvi', 'HanXRQChr05g0135031' => 'han', 'HanXRQChr05g0135041' => 'han', 'HanXRQChr05g0140021' => 'han', 'HanXRQChr06g0178981' => 'han', 'HanXRQChr07g0188251' => 'han', 'HanXRQChr08g0235311' => 'han', 'HanXRQChr09g0271011' => 'han', 'HanXRQChr10g0293321' => 'han', 'HanXRQChr13g0388171' => 'han', 'Haze_00916' => 'cav', 'Haze_05063' => 'cav', 'Haze_20814' => 'cav', 'Haze_24128' => 'cav', 'Hma1.2p1_0745F.1_g212010' => 'hma', 'Hma1.2p1_0757F.1_g213260' => 'hma', 'Hma1.2p1_0936F.1_g238840' => 'hma', 'Hma1.2p1_1735F.1_g299890' => 'hma', 'Hma1.2p1_1861F.1_g305685' => 'hma', 'HPP92_003397' => 'vpl', 'HPP92_012597' => 'vpl', 'HPP92_015520' => 'vpl', 'HPP92_015539' => 'vpl', 'HPP92_020373' => 'vpl', 'Hund04938' => 'sun', 'Hund10677' => 'sun', 'Hund11033' => 'sun', 'Hund12155' => 'sun', 'Lalb_Chr01g0022551' => 'lal', 'Lalb_Chr03g0042341' => 'lal', 'Lalb_Chr07g0192931' => 'lal', 'Lalb_Chr12g0209551' => 'lal', 'Lalb_Chr19g0125251' => 'lal', 'Lalb_Chr19g0137891' => 'lal', 'Lalb_Chr21g0304641' => 'lal', 'Lalb_Chr21g0309881' => 'lal', 'Lj1A5T12' => 'lonja', 'Lj1C148G10' => 'lonja', 'Lj2A93T83' => 'lonja', 'Lj3A738G68' => 'lonja', 'Lj3C966T1' => 'lonja', 'Lj3g0018958' => 'lja', 'Lj3g0021831' => 'lja', 'Lj3g0025443' => 'lja', 'Lj4g0026809' => 'lja', 'Lj5g0012558' => 'lja', 'Lj5g0021586' => 'lja', 'Lsat_1_v5_gn_5_156840' => 'lsa', 'Lsat_1_v5_gn_8_73460' => 'lsa', 'Lsat_1_v5_gn_8_73481' => 'lsa', 'Lsat_1_v5_gn_9_31601' => 'lsa', 'Lsat_1_v5_gn_9_77320' => 'lsa', 'Manes.01G171300' => 'mes', 'Manes.01G171400' => 'mes', 'Manes.01G236100' => 'mes', 'Manes.02G130500' => 'mes', 'Manes.02G130600' => 'mes', 'Manes.03G180200' => 'mes', 'Manes.05G007000' => 'mes', 'Manes.08G084400' => 'mes', 'Manes.09G092600' => 'mes', 'Manes.15G027900' => 'mes', 'MBI04_g40948_MAGBIO' => 'mbi', 'MBI14_g12123_MAGBIO' => 'mbi', 'MBI18_g28915_MAGBIO' => 'mbi', 'MCO09G053' => 'mco', 'MCO11G782' => 'mco', 'MCO15G215' => 'mco', 'MD03G1088500' => 'mdo', 'MD03G1088600' => 'mdo', 'MD04G1130800' => 'mdo', 'MD09G1291700' => 'mdo', 'MD11G1097500' => 'mdo', 'MD11G1097600' => 'mdo', 'MD12G1143900' => 'mdo', 'MD13G1191400' => 'mdo', 'MD16G1191500' => 'mdo', 'Medtr1g085570' => 'mtr', 'Medtr1g104610' => 'mtr', 'Medtr2g097520' => 'mtr', 'Medtr4g021800' => 'mtr', 'Medtr4g021825' => 'mtr', 'Medtr4g064270' => 'mtr', 'Medtr4g064380' => 'mtr', 'Medtr7g062150' => 'mtr', 'MELO3C003138.2' => 'cme', 'MELO3C005187.2' => 'cme', 'MELO3C009252.2' => 'cme', 'MELO3C014481.2' => 'cme', 'MELO3C020616.2' => 'cme', 'MELO3C020617.2' => 'cme', 'MELO3C020618.2' => 'cme', 'Migut.G00328' => 'egut', 'Migut.J00320' => 'egut', 'Migut.L01000' => 'egut', 'Migut.L01953' => 'egut', 'MSTRG.10253' => 'ama', 'MSTRG.19077' => 'ama', 'MSTRG.26780' => 'ama', 'MSTRG.4023' => 'ama', 'MSTRG.5655' => 'ama', 'MSTRG.9992' => 'ama', 'Nitab4.5_0000043g0310' => 'nta', 'Nitab4.5_0000463g0080' => 'nta', 'Nitab4.5_0000705g0170' => 'nta', 'Nitab4.5_0001326g0060' => 'nta', 'Nitab4.5_0001628g0030' => 'nta', 'Nitab4.5_0002103g0110' => 'nta', 'Nitab4.5_0002946g0030' => 'nta', 'Nitab4.5_0004639g0030' => 'nta', 'Nn2g11149' => 'nnu', 'Nn2g13389' => 'nnu', 'Nn4g25326' => 'nnu', 'Nn4g26290' => 'nnu', 'Nn5g29865' => 'nnu', 'Oeu004163.1' => 'oeu', 'Oeu006901.1' => 'oeu', 'Oeu010096.1' => 'oeu', 'Oeu024340.1' => 'oeu', 'Oeu048369.1' => 'oeu', 'Os01g0973000' => 'osa', 'Os03g0273800' => 'osa', 'Os03g0701200' => 'osa', 'Os03g0834050' => 'osa', 'Os07g0634400' => 'osa', 'Peaxi162Scf00092g01414' => 'pax', 'Peaxi162Scf00165g00818' => 'pax', 'Peaxi162Scf00309g00516' => 'pax', 'Peaxi162Scf00774g00218' => 'pax', 'PGR004G1824' => 'pgr', 'PGR004G2606' => 'pgr', 'PGR031G2716' => 'pgr', 'PGR102G2460' => 'pgr', 'PGR142G2599' => 'pgr', 'PGSC0003DMG400000843' => 'stu', 'PGSC0003DMG400008829' => 'stu', 'PGSC0003DMG400030418' => 'stu', 'PGSC0003DMG400031834' => 'stu', 'PGSC0003DMG401028300' => 'stu', 'PGSC0003DMG402028300' => 'stu', 'Phvul.001G219300' => 'pvu', 'Phvul.007G056000' => 'pvu', 'Phvul.007G208000' => 'pvu', 'Phvul.008G119500' => 'pvu', 'Phvul.010G011200' => 'pvu', 'Phvul.010G014800' => 'pvu', 'Phvul.011G062900' => 'pvu', 'Phvul.L007043' => 'pvu', 'Potri.001G242300' => 'ptr', 'Potri.002G185300' => 'ptr', 'Potri.006G086900' => 'ptr', 'Potri.008G151700' => 'ptr', 'Potri.009G033500' => 'ptr', 'Potri.010G089300' => 'ptr', 'Potri.014G110800' => 'ptr', 'Pp3c27_8130' => 'ppa', 'Pp3c6_27410' => 'ppa', 'PRCOL_00001659' => 'pco', 'PRCOL_00001927' => 'pco', 'PRCOL_00003649' => 'pco', 'Prupe.1G011600' => 'ppe', 'Prupe.3G000800' => 'ppe', 'Prupe.3G001100' => 'ppe', 'Prupe.6G072700' => 'ppe', 'Prupe.6G072800' => 'ppe', 'Prupe.6G257300' => 'ppe', 'Prupe.8G033000' => 'ppe', 'Psat0s2633g0080' => 'psa', 'Psat0s3396g0080' => 'psa', 'Psat0s3396g0200' => 'psa', 'Psat3g139080' => 'psa', 'Psat5g285080' => 'psa', 'Psat6g157760' => 'psa', 'Psat6g208440' => 'psa', 'Psat7g215320' => 'psa', 'Psat7g215400' => 'psa', 'Psat7g235600' => 'psa', 'Psat7g235760' => 'psa', 'PSO063G4603' => 'pso', 'PSO210G0182' => 'pso', 'PSO210G0196' => 'pso', 'PSO339G0394' => 'pso', 'PSO339G4127' => 'pso', 'PSO513G0064' => 'pso', 'PSO761G0079' => 'pso', 'QL01p031003' => 'qlo', 'QL01p031078' => 'qlo', 'QL06p003004' => 'qlo', 'QL07p048731' => 'qlo', 'QL09p037427' => 'qlo', 'RcHm_v2.0_Chr3g0466361' => 'rch', 'RcHm_v2.0_Chr3g0485571' => 'rch', 'RcHm_v2.0_Chr4g0416551' => 'rch', 'RcHm_v2.0_Chr5g0065831' => 'rch', 'Rhsim01G0230500' => 'rsi', 'Rhsim05G0194000' => 'rsi', 'Rhsim08G0250400' => 'rsi', 'Sabra02G0131000' => 'sbr', 'Sabra06G0066300' => 'sbr', 'Sabra08G0115500' => 'sbr', 'Sabra09G0023900' => 'sbr', 'Sabra10G0054000' => 'sbr', 'Sabra14G0081500' => 'sbr', 'Sabra16G0147100' => 'sbr', 'SalBow2G2957' => 'sbo', 'SalBow4G3320' => 'sbo', 'SalBow8G1894' => 'sbo', 'Sc07g0007950' => 'sci', 'Sc12g0001360' => 'sci', 'Sc13g0004330' => 'sci', 'Sc20g0005010' => 'sci', 'Sed0000361' => 'sed', 'Sed0001706' => 'sed', 'Sed0002422' => 'sed', 'Sed0004029' => 'sed', 'Sed0004602' => 'sed', 'Sed0004943' => 'sed', 'Sed0008646' => 'sed', 'Sed0023313' => 'sed', 'Sed0024843' => 'sed', 'SEGI_00081' => 'sgi', 'SEGI_00947' => 'sgi', 'SEGI_04046' => 'sgi', 'SEGI_06880' => 'sgi', 'SEGI_09736' => 'sgi', 'SEGI_12741' => 'sgi', 'SEGI_14530' => 'sgi', 'SEGI_20705' => 'sgi', 'SEGI_26088' => 'sgi', 'SEGI_28323' => 'sgi', 'SEGI_33343' => 'sgi', 'SGA_v2.0_scaffold126G33775' => 'sas', 'SGA_v2.0_scaffold2G01337' => 'sas', 'SGA_v2.0_scaffold38G15006' => 'sas', 'SGA_v2.0_scaffold39G15264' => 'sas', 'SGA_v2.0_scaffold453G51880' => 'sas', 'SHI12696' => 'shi', 'SMO367G1096' => 'smo', 'Solyc01g068630.3' => 'sly', 'Solyc05g011880.3' => 'sly', 'Solyc06g076300.3' => 'sly', 'Solyc09g010940.4' => 'sly', 'Solyc09g075890.3' => 'sly', 'Sopen01g030560' => 'spe', 'Sopen05g006630' => 'spe', 'Sopen06g032720' => 'spe', 'Sopen09g005660' => 'spe', 'Sopen09g030690' => 'spe', 'Sp4g14540' => 'spa', 'Sp4g20030' => 'spa', 'Sp5g01320' => 'spa', 'Sp6g21170' => 'spa', 'Sp6g21180' => 'spa', 'Sp6g21190' => 'spa', 'Sp6g40220' => 'spa', 'TAR362G0122' => 'tar', 'TAR362G1338' => 'tar', 'TAR369G0590' => 'tar', 'TAR371G0824' => 'tar', 'TAR622G1429' => 'tar', 'TAR623G0734' => 'tar', 'TAR625G0441' => 'tar', 'TAR629G0976' => 'tar', 'TAR633G1195' => 'tar', 'TAR636G2660' => 'tar', 'THA.LOC104799440' => 'tha', 'THA.LOC104800966' => 'tha', 'THA.LOC104806559' => 'tha', 'THA.LOC104810765' => 'tha', 'THA.LOC104816266' => 'tha', 'THA.LOC104817419' => 'tha', 'THA.LOC104827021' => 'tha', 'Thecc.01G327400' => 'tca', 'Thecc.04G229200' => 'tca', 'Thecc.05G037400' => 'tca', 'Thecc.09G318600' => 'tca', 'Thecc.09G318700' => 'tca', 'Thhalv10006238m.g' => 'esa', 'Thhalv10014321m.g' => 'esa', 'Thhalv10014335m.g' => 'esa', 'Thhalv10015826m.g' => 'esa', 'Thhalv10017107m.g' => 'esa', 'Thhalv10017180m.g' => 'esa', 'Thhalv10029339m.g' => 'esa', 'TPR.G1699' => 'tpr', 'TPR.G23609' => 'tpr', 'TPR.G3081' => 'tpr', 'TPR.G40397' => 'tpr', 'TPR.G5522' => 'tpr', 'TPR.G5618' => 'tpr', 'TPR.G5626' => 'tpr', 'TWI09G1632' => 'twi', 'TWI23G1230' => 'twi', 'TWI53G1064' => 'twi', 'TWI59G0751' => 'twi', 'TWI74G0947' => 'twi', 'TWI77G0337' => 'twi', 'TWI79G1254' => 'twi', 'unitig_0.g2341' => 'ugi', 'unitig_26.g10006' => 'ugi', 'unitig_26.g10008' => 'ugi', 'unitig_26.g9192' => 'ugi', 'vmacro14547' => 'vma', 'vmacro15333' => 'vma', 'vmacro18743' => 'vma', 'vmacro20166' => 'vma', 'VMungo0331G0523' => 'vmu', 'VMungo0331G1202' => 'vmu', 'VMungo0720G1228' => 'vmu', 'VMungo0720G1514' => 'vmu', 'VMungo1080G0169' => 'vmu', 'VMungo1127G1475' => 'vmu', 'VMungo1383G1208' => 'vmu', 'VMungo1383G1698' => 'vmu', 'Zm00001eb012270' => 'zma', 'Zm00001eb054100' => 'zma', 'Zm00001eb063350' => 'zma', 'Zm00001eb328560' => 'zma', 'Zm00001eb342820' => 'zma', 'Zm00001eb362210' => 'zma', 'Zm00001eb397730' => 'zma', 'Zm00001eb399750' => 'zma' ) $gf_id = 'HOM05D000959' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000959' ) $data_identifier = 'HOM05D000959' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 5, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 5, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 10, 'mbi' => (int) 3, 'mco' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 2, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 3, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 11, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399750' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000959', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '622', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p07100' => 'bna', 'A03p11720' => 'bna', 'A05p08300' => 'bna', 'A05p13380' => 'bna', 'A09p54130' => 'bna', 'A10p16690' => 'bna', 'A10p16700' => 'bna', 'A10p33390' => 'bna', 'Aa31LG10G16020' => 'aar', 'Aa31LG1G11810' => 'aar', 'Aa31LG1G11830' => 'aar', 'Aa31LG1G22510' => 'aar', 'Aa31LG5G4890' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5793' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2310' => 'aag', 'Actinidia08499' => 'ach', 'Actinidia11262' => 'ach', 'Actinidia23926' => 'ach', 'Actinidia34420' => 'ach', 'Actinidia36970' => 'ach', 'Ah.02g111220' => 'amhyb', 'Ah.15g097750' => 'amhyb', 'AL4G27500' => 'aly', 'AL6G11470' => 'aly', 'AL8G35950' => 'aly', 'AL8G35960' => 'aly', 'AL8G35970' => 'aly', 'Aqoxy1G00912' => 'aox', 'Aqoxy2G02253' => 'aox', 'Aqoxy2G02411' => 'aox', 'Aqoxy5G00485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BZ66YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K8ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM4FUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6BF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HFV7XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25JBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0YNNV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MAKK6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P70IT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP2Z6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V61LZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YWP64R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3S9AI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7PGHH' => 'arhy', 'AT2G32150' => 'ath', 'AT3G62040' => 'ath', 'AT5G02230' => 'ath', 'AT5G59480' => 'ath', 'AT5G59490' => 'ath', 'ATR0332G060' => 'atr', 'ATR0559G190' => 'atr', 'ATR0693G294' => 'atr', 'Atru.chr3.3975' => 'acertr', 'Atru.chr3.3976' => 'acertr', 'Atru.chr3.3977' => 'acertr', 'Atru.chr4.2498' => 'acertr', 'Atru.chr5.838' => 'acertr', 'Atru.chr8.1990' => 'acertr', 'Atru.chr8.1991' => 'acertr', 'Atru.chr8.1992' => 'acertr', 'AUR62001759' => 'cqu', 'AUR62009545' => 'cqu', 'AUR62010474' => 'cqu', 'AUR62025820' => 'cqu', 'AUR62030422' => 'cqu', 'AUR62033605' => 'cqu', 'AUR62038615' => 'cqu', 'AUR62041347' => 'cqu', 'BcaB01g04574' => 'bca', 'BcaB02g09263' => 'bca', 'BcaB02g10453' => 'bca', 'BcaB05g22513' => 'bca', 'BcaB08g36253' => 'bca', 'BcaB08g36254' => 'bca', 'BcaC01g06519' => 'bca', 'BcaC02g11889' => 'bca', 'BcaC03g14010' => 'bca', 'BcaC03g18439' => 'bca', 'BcaC04g19765' => 'bca', 'BcaC09g48432' => 'bca', 'BcaNung07302' => 'bca', 'BolC2t06040H' => 'bol', 'BolC2t07346H' => 'bol', 'BolC3t13817H' => 'bol', 'BolC4t22625H' => 'bol', 'BolC4t23297H' => 'bol', 'BolC8t51278H' => 'bol', 'BolC9t58050H' => 'bol', 'BolC9t58051H' => 'bol', 'BolC9t60163H' => 'bol', 'BraA02t04712Z' => 'bra', 'BraA02t05791Z' => 'bra', 'BraA03t10483Z' => 'bra', 'BraA05t19795Z' => 'bra', 'BraA05t20276Z' => 'bra', 'BraA09t40827Z' => 'bra', 'BraA10t43750Z' => 'bra', 'BraA10t43751Z' => 'bra', 'BraA10t45370Z' => 'bra', 'C02p00400' => 'bna', 'C02p12460' => 'bna', 'C03p13680' => 'bna', 'C04p10270' => 'bna', 'C04p17500' => 'bna', 'C08p37010' => 'bna', 'C09p51880' => 'bna', 'C09p51890' => 'bna', 'C09p74300' => 'bna', 'CAN.G179.26' => 'can', 'CAN.G3384.1' => 'can', 'CAN.G394.68' => 'can', 'CAN.G907.13' => 'can', 'CANSAT11G0012' => 'cansat', 'CANSAT25G1586' => 'cansat', 'CANSAT35G0735' => 'cansat', 'CANSAT54G0556' => 'cansat', 'CANSAT64G0356' => 'cansat', 'CANSAT78G2042' => 'cansat', 'CARHR125920' => 'chi', 'CARHR131910' => 'chi', 'CARHR172390' => 'chi', 'CARHR211140' => 'chi', 'CARHR285850' => 'chi', 'CARHR285860' => 'chi', 'Carub.0004s1347' => 'cru', 'Carub.0004s1960' => 'cru', 'Carub.0005s2880' => 'cru', 'Carub.0006s0107' => 'cru', 'Carub.0008s2015' => 'cru', 'Carub.0008s2016' => 'cru', 'Carub.0008s2017' => 'cru', 'Ca_01315_v3' => 'car', 'Ca_05063_v3' => 'car', 'Ca_10231_v3' => 'car', 'Ca_10913_v3' => 'car', 'Ca_19156_v3' => 'car', 'Ca_23644_v3' => 'car', 'Ca_26735_v3' => 'car', 'Cc01_g13130' => 'ccan', 'Cc02_g21690' => 'ccan', 'Cc03_g03600' => 'ccan', 'Cc06_g02510' => 'ccan', 'CDE02G1265' => 'cde', 'CDE05G0415' => 'cde', 'CDE08G1082' => 'cde', 'Cfa005780' => 'cfa', 'Cfa011522' => 'cfa', 'Cfa011523' => 'cfa', 'Cfa015627' => 'cfa', 'Cfa017359' => 'cfa', 'Ciclev10005687m.g' => 'ccl', 'Ciclev10012173m.g' => 'ccl', 'Ciclev10021621m.g' => 'ccl', 'Ciclev10028968m.g' => 'ccl', 'Ciclev10029907m.g' => 'ccl', 'CiPaw.01G164800' => 'cil', 'CiPaw.07G083700' => 'cil', 'CiPaw.07G127000' => 'cil', 'CiPaw.07G136900' => 'cil', 'CiPaw.08G081700' => 'cil', 'CiPaw.09G194600' => 'cil', 'CiPaw.10G146500' => 'cil', 'CiPaw.13G091500' => 'cil', 'CiPaw.13G091600' => 'cil', 'ClCG00G003390' => 'cla', 'ClCG01G007220' => 'cla', 'ClCG03G001370' => 'cla', 'ClCG04G008100' => 'cla', 'ClCG06G006110' => 'cla', 'ClCG06G006130' => 'cla', 'ClCG10G021210' => 'cla', 'COL.COLO4_07648' => 'col', 'COL.COLO4_07650' => 'col', 'COL.COLO4_07651' => 'col', 'COL.COLO4_14780' => 'col', 'COL.COLO4_18546' => 'col', 'COL.COLO4_18547' => 'col', 'COL.COLO4_23103' => 'col', 'COL.COLO4_30419' => 'col', 'COL.COLO4_34232' => 'col', 'Cpa.g.sc169.20' => 'cpa', 'Cpa.g.sc57.45' => 'cpa', 'Cpa.g.sc58.124' => 'cpa', 'Cpa.g.sc58.125' => 'cpa', 'Cpa.g.sc81.118' => 'cpa', 'Cpa.g.sc81.119' => 'cpa', 'Cre12.g524700' => 'cre', 'CsaV3_1G034430' => 'csa', 'CsaV3_1G034440' => 'csa', 'CsaV3_1G034450' => 'csa', 'CsaV3_3G034830' => 'csa', 'CsaV3_4G025090' => 'csa', 'CsaV3_5G018660' => 'csa', 'CsaV3_6G038160' => 'csa', 'CSS0003447' => 'camsi', 'CSS0017840' => 'camsi', 'CSS0019260' => 'camsi', 'CSS0040375' => 'camsi', 'CSS0042533' => 'camsi', 'DCAR_005960' => 'dca', 'DCAR_012104' => 'dca', 'DCAR_012105' => 'dca', 'DCAR_012293' => 'dca', 'DCAR_015632' => 'dca', 'DCAR_024602' => 'dca', 'DCAR_028752' => 'dca', 'Dinv06261' => 'din', 'Dinv13982' => 'din', 'Dinv17029' => 'din', 'Dinv18463' => 'din', 'Dinv33181' => 'din', 'Dinv35585' => 'din', 'Dinv37161' => 'din', 'Dinv42977' => 'din', 'Dinv43122' => 'din', 'Dinv44517' => 'din', 'Duzib093G0256' => 'dzi', 'Duzib106G1254' => 'dzi', 'Duzib128G1789' => 'dzi', 'Duzib133G0633' => 'dzi', 'Duzib138G0510' => 'dzi', 'Duzib150G1084' => 'dzi', 'Duzib168G0488' => 'dzi', 'Duzib168G1523' => 'dzi', 'Duzib170G0133' => 'dzi', 'ECA234G1433' => 'eca', 'ECA236G1432' => 'eca', 'ECA236G2256' => 'eca', 'ECA236G2365' => 'eca', 'ECA236G4830' => 'eca', 'ECA248G1505' => 'eca', 'EL10Ac3g06431' => 'bvu', 'EL10Ac5g12577' => 'bvu', 'EL10Ac6g13533' => 'bvu', 'EL10Ac7g16045' => 'bvu', 'Eucgr.A01281' => 'egr', 'Eucgr.B02326' => 'egr', 'Eucgr.H03532' => 'egr', 'Eucgr.K00553' => 'egr', 'Eucgr.K03116' => 'egr', 'FAN02G3963' => 'fan', 'FAN05G0438' => 'fan', 'FAN09G2434' => 'fan', 'FAN12G3984' => 'fan', 'FAN14G0798' => 'fan', 'FAN17G0652' => 'fan', 'FAN19G1988' => 'fan', 'FAN22G0632' => 'fan', 'FAN23G0387' => 'fan', 'FAN26G1323' => 'fan', 'FAN28G0666' => 'fan', 'FvH4_1g26080' => 'fve', 'FvH4_3g36780' => 'fve', 'FvH4_4g15270' => 'fve', 'FvH4_6g13490' => 'fve', 'Glyma.01G098700' => 'gma', 'Glyma.03G065900' => 'gma', 'Glyma.03G073754' => 'gma', 'Glyma.03G073758' => 'gma', 'Glyma.03G083200' => 'gma', 'Glyma.03G225500' => 'gma', 'Glyma.05G037766' => 'gma', 'Glyma.07G133500' => 'gma', 'Glyma.10G139400' => 'gma', 'Glyma.10G248900' => 'gma', 'Glyma.11G137800' => 'gma', 'Glyma.12G061300' => 'gma', 'Glyma.13G337900' => 'gma', 'Glyma.15G036600' => 'gma', 'Glyma.18G182800' => 'gma', 'Glyma.19G222500' => 'gma', 'Glyma.20G144800' => 'gma', 'Gohir.A01G222000' => 'ghi', 'Gohir.A03G044000' => 'ghi', 'Gohir.A03G044100' => 'ghi', 'Gohir.A04G083100' => 'ghi', 'Gohir.A07G127200' => 'ghi', 'Gohir.A07G132400' => 'ghi', 'Gohir.A08G000700' => 'ghi', 'Gohir.A11G327300' => 'ghi', 'Gohir.D01G211500' => 'ghi', 'Gohir.D03G123400' => 'ghi', 'Gohir.D03G123500' => 'ghi', 'Gohir.D04G121800' => 'ghi', 'Gohir.D07G131500' => 'ghi', 'Gohir.D07G136600' => 'ghi', 'Gohir.D08G011600' => 'ghi', 'Gohir.D11G346200' => 'ghi', 'Gorai.001G142800' => 'gra', 'Gorai.001G148700' => 'gra', 'Gorai.002G257300' => 'gra', 'Gorai.003G130000' => 'gra', 'Gorai.003G130100' => 'gra', 'Gorai.004G005300' => 'gra', 'Gorai.007G376500' => 'gra', 'Gorai.012G104700' => 'gra', 'GSVIVG01017946001' => 'vvi', 'GSVIVG01024928001' => 'vvi', 'GSVIVG01028227001' => 'vvi', 'GSVIVG01034151001' => 'vvi', 'HanXRQChr05g0135031' => 'han', 'HanXRQChr05g0135041' => 'han', 'HanXRQChr05g0140021' => 'han', 'HanXRQChr06g0178981' => 'han', 'HanXRQChr07g0188251' => 'han', 'HanXRQChr08g0235311' => 'han', 'HanXRQChr09g0271011' => 'han', 'HanXRQChr10g0293321' => 'han', 'HanXRQChr13g0388171' => 'han', 'Haze_00916' => 'cav', 'Haze_05063' => 'cav', 'Haze_20814' => 'cav', 'Haze_24128' => 'cav', 'Hma1.2p1_0745F.1_g212010' => 'hma', 'Hma1.2p1_0757F.1_g213260' => 'hma', 'Hma1.2p1_0936F.1_g238840' => 'hma', 'Hma1.2p1_1735F.1_g299890' => 'hma', 'Hma1.2p1_1861F.1_g305685' => 'hma', 'HPP92_003397' => 'vpl', 'HPP92_012597' => 'vpl', 'HPP92_015520' => 'vpl', 'HPP92_015539' => 'vpl', 'HPP92_020373' => 'vpl', 'Hund04938' => 'sun', 'Hund10677' => 'sun', 'Hund11033' => 'sun', 'Hund12155' => 'sun', 'Lalb_Chr01g0022551' => 'lal', 'Lalb_Chr03g0042341' => 'lal', 'Lalb_Chr07g0192931' => 'lal', 'Lalb_Chr12g0209551' => 'lal', 'Lalb_Chr19g0125251' => 'lal', 'Lalb_Chr19g0137891' => 'lal', 'Lalb_Chr21g0304641' => 'lal', 'Lalb_Chr21g0309881' => 'lal', 'Lj1A5T12' => 'lonja', 'Lj1C148G10' => 'lonja', 'Lj2A93T83' => 'lonja', 'Lj3A738G68' => 'lonja', 'Lj3C966T1' => 'lonja', 'Lj3g0018958' => 'lja', 'Lj3g0021831' => 'lja', 'Lj3g0025443' => 'lja', 'Lj4g0026809' => 'lja', 'Lj5g0012558' => 'lja', 'Lj5g0021586' => 'lja', 'Lsat_1_v5_gn_5_156840' => 'lsa', 'Lsat_1_v5_gn_8_73460' => 'lsa', 'Lsat_1_v5_gn_8_73481' => 'lsa', 'Lsat_1_v5_gn_9_31601' => 'lsa', 'Lsat_1_v5_gn_9_77320' => 'lsa', 'Manes.01G171300' => 'mes', 'Manes.01G171400' => 'mes', 'Manes.01G236100' => 'mes', 'Manes.02G130500' => 'mes', 'Manes.02G130600' => 'mes', 'Manes.03G180200' => 'mes', 'Manes.05G007000' => 'mes', 'Manes.08G084400' => 'mes', 'Manes.09G092600' => 'mes', 'Manes.15G027900' => 'mes', 'MBI04_g40948_MAGBIO' => 'mbi', 'MBI14_g12123_MAGBIO' => 'mbi', 'MBI18_g28915_MAGBIO' => 'mbi', 'MCO09G053' => 'mco', 'MCO11G782' => 'mco', 'MCO15G215' => 'mco', 'MD03G1088500' => 'mdo', 'MD03G1088600' => 'mdo', 'MD04G1130800' => 'mdo', 'MD09G1291700' => 'mdo', 'MD11G1097500' => 'mdo', 'MD11G1097600' => 'mdo', 'MD12G1143900' => 'mdo', 'MD13G1191400' => 'mdo', 'MD16G1191500' => 'mdo', 'Medtr1g085570' => 'mtr', 'Medtr1g104610' => 'mtr', 'Medtr2g097520' => 'mtr', 'Medtr4g021800' => 'mtr', 'Medtr4g021825' => 'mtr', 'Medtr4g064270' => 'mtr', 'Medtr4g064380' => 'mtr', 'Medtr7g062150' => 'mtr', 'MELO3C003138.2' => 'cme', 'MELO3C005187.2' => 'cme', 'MELO3C009252.2' => 'cme', 'MELO3C014481.2' => 'cme', 'MELO3C020616.2' => 'cme', 'MELO3C020617.2' => 'cme', 'MELO3C020618.2' => 'cme', 'Migut.G00328' => 'egut', 'Migut.J00320' => 'egut', 'Migut.L01000' => 'egut', 'Migut.L01953' => 'egut', 'MSTRG.10253' => 'ama', 'MSTRG.19077' => 'ama', 'MSTRG.26780' => 'ama', 'MSTRG.4023' => 'ama', 'MSTRG.5655' => 'ama', 'MSTRG.9992' => 'ama', 'Nitab4.5_0000043g0310' => 'nta', 'Nitab4.5_0000463g0080' => 'nta', 'Nitab4.5_0000705g0170' => 'nta', 'Nitab4.5_0001326g0060' => 'nta', 'Nitab4.5_0001628g0030' => 'nta', 'Nitab4.5_0002103g0110' => 'nta', 'Nitab4.5_0002946g0030' => 'nta', 'Nitab4.5_0004639g0030' => 'nta', 'Nn2g11149' => 'nnu', 'Nn2g13389' => 'nnu', 'Nn4g25326' => 'nnu', 'Nn4g26290' => 'nnu', 'Nn5g29865' => 'nnu', 'Oeu004163.1' => 'oeu', 'Oeu006901.1' => 'oeu', 'Oeu010096.1' => 'oeu', 'Oeu024340.1' => 'oeu', 'Oeu048369.1' => 'oeu', 'Os01g0973000' => 'osa', 'Os03g0273800' => 'osa', 'Os03g0701200' => 'osa', 'Os03g0834050' => 'osa', 'Os07g0634400' => 'osa', 'Peaxi162Scf00092g01414' => 'pax', 'Peaxi162Scf00165g00818' => 'pax', 'Peaxi162Scf00309g00516' => 'pax', 'Peaxi162Scf00774g00218' => 'pax', 'PGR004G1824' => 'pgr', 'PGR004G2606' => 'pgr', 'PGR031G2716' => 'pgr', 'PGR102G2460' => 'pgr', 'PGR142G2599' => 'pgr', 'PGSC0003DMG400000843' => 'stu', 'PGSC0003DMG400008829' => 'stu', 'PGSC0003DMG400030418' => 'stu', 'PGSC0003DMG400031834' => 'stu', 'PGSC0003DMG401028300' => 'stu', 'PGSC0003DMG402028300' => 'stu', 'Phvul.001G219300' => 'pvu', 'Phvul.007G056000' => 'pvu', 'Phvul.007G208000' => 'pvu', 'Phvul.008G119500' => 'pvu', 'Phvul.010G011200' => 'pvu', 'Phvul.010G014800' => 'pvu', 'Phvul.011G062900' => 'pvu', 'Phvul.L007043' => 'pvu', 'Potri.001G242300' => 'ptr', 'Potri.002G185300' => 'ptr', 'Potri.006G086900' => 'ptr', 'Potri.008G151700' => 'ptr', 'Potri.009G033500' => 'ptr', 'Potri.010G089300' => 'ptr', 'Potri.014G110800' => 'ptr', 'Pp3c27_8130' => 'ppa', 'Pp3c6_27410' => 'ppa', 'PRCOL_00001659' => 'pco', 'PRCOL_00001927' => 'pco', 'PRCOL_00003649' => 'pco', 'Prupe.1G011600' => 'ppe', 'Prupe.3G000800' => 'ppe', 'Prupe.3G001100' => 'ppe', 'Prupe.6G072700' => 'ppe', 'Prupe.6G072800' => 'ppe', 'Prupe.6G257300' => 'ppe', 'Prupe.8G033000' => 'ppe', 'Psat0s2633g0080' => 'psa', 'Psat0s3396g0080' => 'psa', 'Psat0s3396g0200' => 'psa', 'Psat3g139080' => 'psa', 'Psat5g285080' => 'psa', 'Psat6g157760' => 'psa', 'Psat6g208440' => 'psa', 'Psat7g215320' => 'psa', 'Psat7g215400' => 'psa', 'Psat7g235600' => 'psa', 'Psat7g235760' => 'psa', 'PSO063G4603' => 'pso', 'PSO210G0182' => 'pso', 'PSO210G0196' => 'pso', 'PSO339G0394' => 'pso', 'PSO339G4127' => 'pso', 'PSO513G0064' => 'pso', 'PSO761G0079' => 'pso', 'QL01p031003' => 'qlo', 'QL01p031078' => 'qlo', 'QL06p003004' => 'qlo', 'QL07p048731' => 'qlo', 'QL09p037427' => 'qlo', 'RcHm_v2.0_Chr3g0466361' => 'rch', 'RcHm_v2.0_Chr3g0485571' => 'rch', 'RcHm_v2.0_Chr4g0416551' => 'rch', 'RcHm_v2.0_Chr5g0065831' => 'rch', 'Rhsim01G0230500' => 'rsi', 'Rhsim05G0194000' => 'rsi', 'Rhsim08G0250400' => 'rsi', 'Sabra02G0131000' => 'sbr', 'Sabra06G0066300' => 'sbr', 'Sabra08G0115500' => 'sbr', 'Sabra09G0023900' => 'sbr', 'Sabra10G0054000' => 'sbr', 'Sabra14G0081500' => 'sbr', 'Sabra16G0147100' => 'sbr', 'SalBow2G2957' => 'sbo', 'SalBow4G3320' => 'sbo', 'SalBow8G1894' => 'sbo', 'Sc07g0007950' => 'sci', 'Sc12g0001360' => 'sci', 'Sc13g0004330' => 'sci', 'Sc20g0005010' => 'sci', 'Sed0000361' => 'sed', 'Sed0001706' => 'sed', 'Sed0002422' => 'sed', 'Sed0004029' => 'sed', 'Sed0004602' => 'sed', 'Sed0004943' => 'sed', 'Sed0008646' => 'sed', 'Sed0023313' => 'sed', 'Sed0024843' => 'sed', 'SEGI_00081' => 'sgi', 'SEGI_00947' => 'sgi', 'SEGI_04046' => 'sgi', 'SEGI_06880' => 'sgi', 'SEGI_09736' => 'sgi', 'SEGI_12741' => 'sgi', 'SEGI_14530' => 'sgi', 'SEGI_20705' => 'sgi', 'SEGI_26088' => 'sgi', 'SEGI_28323' => 'sgi', 'SEGI_33343' => 'sgi', 'SGA_v2.0_scaffold126G33775' => 'sas', 'SGA_v2.0_scaffold2G01337' => 'sas', 'SGA_v2.0_scaffold38G15006' => 'sas', 'SGA_v2.0_scaffold39G15264' => 'sas', 'SGA_v2.0_scaffold453G51880' => 'sas', 'SHI12696' => 'shi', 'SMO367G1096' => 'smo', 'Solyc01g068630.3' => 'sly', 'Solyc05g011880.3' => 'sly', 'Solyc06g076300.3' => 'sly', 'Solyc09g010940.4' => 'sly', 'Solyc09g075890.3' => 'sly', 'Sopen01g030560' => 'spe', 'Sopen05g006630' => 'spe', 'Sopen06g032720' => 'spe', 'Sopen09g005660' => 'spe', 'Sopen09g030690' => 'spe', 'Sp4g14540' => 'spa', 'Sp4g20030' => 'spa', 'Sp5g01320' => 'spa', 'Sp6g21170' => 'spa', 'Sp6g21180' => 'spa', 'Sp6g21190' => 'spa', 'Sp6g40220' => 'spa', 'TAR362G0122' => 'tar', 'TAR362G1338' => 'tar', 'TAR369G0590' => 'tar', 'TAR371G0824' => 'tar', 'TAR622G1429' => 'tar', 'TAR623G0734' => 'tar', 'TAR625G0441' => 'tar', 'TAR629G0976' => 'tar', 'TAR633G1195' => 'tar', 'TAR636G2660' => 'tar', 'THA.LOC104799440' => 'tha', 'THA.LOC104800966' => 'tha', 'THA.LOC104806559' => 'tha', 'THA.LOC104810765' => 'tha', 'THA.LOC104816266' => 'tha', 'THA.LOC104817419' => 'tha', 'THA.LOC104827021' => 'tha', 'Thecc.01G327400' => 'tca', 'Thecc.04G229200' => 'tca', 'Thecc.05G037400' => 'tca', 'Thecc.09G318600' => 'tca', 'Thecc.09G318700' => 'tca', 'Thhalv10006238m.g' => 'esa', 'Thhalv10014321m.g' => 'esa', 'Thhalv10014335m.g' => 'esa', 'Thhalv10015826m.g' => 'esa', 'Thhalv10017107m.g' => 'esa', 'Thhalv10017180m.g' => 'esa', 'Thhalv10029339m.g' => 'esa', 'TPR.G1699' => 'tpr', 'TPR.G23609' => 'tpr', 'TPR.G3081' => 'tpr', 'TPR.G40397' => 'tpr', 'TPR.G5522' => 'tpr', 'TPR.G5618' => 'tpr', 'TPR.G5626' => 'tpr', 'TWI09G1632' => 'twi', 'TWI23G1230' => 'twi', 'TWI53G1064' => 'twi', 'TWI59G0751' => 'twi', 'TWI74G0947' => 'twi', 'TWI77G0337' => 'twi', 'TWI79G1254' => 'twi', 'unitig_0.g2341' => 'ugi', 'unitig_26.g10006' => 'ugi', 'unitig_26.g10008' => 'ugi', 'unitig_26.g9192' => 'ugi', 'vmacro14547' => 'vma', 'vmacro15333' => 'vma', 'vmacro18743' => 'vma', 'vmacro20166' => 'vma', 'VMungo0331G0523' => 'vmu', 'VMungo0331G1202' => 'vmu', 'VMungo0720G1228' => 'vmu', 'VMungo0720G1514' => 'vmu', 'VMungo1080G0169' => 'vmu', 'VMungo1127G1475' => 'vmu', 'VMungo1383G1208' => 'vmu', 'VMungo1383G1698' => 'vmu', 'Zm00001eb012270' => 'zma', 'Zm00001eb054100' => 'zma', 'Zm00001eb063350' => 'zma', 'Zm00001eb328560' => 'zma', 'Zm00001eb342820' => 'zma', 'Zm00001eb362210' => 'zma', 'Zm00001eb397730' => 'zma', 'Zm00001eb399750' => 'zma' ), 'gf_id' => 'HOM05D000959', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000959' ), 'data_identifier' => 'HOM05D000959', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000959', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '622', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p07100' => 'bna', 'A03p11720' => 'bna', 'A05p08300' => 'bna', 'A05p13380' => 'bna', 'A09p54130' => 'bna', 'A10p16690' => 'bna', 'A10p16700' => 'bna', 'A10p33390' => 'bna', 'Aa31LG10G16020' => 'aar', 'Aa31LG1G11810' => 'aar', 'Aa31LG1G11830' => 'aar', 'Aa31LG1G22510' => 'aar', 'Aa31LG5G4890' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5793' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2310' => 'aag', 'Actinidia08499' => 'ach', 'Actinidia11262' => 'ach', 'Actinidia23926' => 'ach', 'Actinidia34420' => 'ach', 'Actinidia36970' => 'ach', 'Ah.02g111220' => 'amhyb', 'Ah.15g097750' => 'amhyb', 'AL4G27500' => 'aly', 'AL6G11470' => 'aly', 'AL8G35950' => 'aly', 'AL8G35960' => 'aly', 'AL8G35970' => 'aly', 'Aqoxy1G00912' => 'aox', 'Aqoxy2G02253' => 'aox', 'Aqoxy2G02411' => 'aox', 'Aqoxy5G00485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BZ66YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K8ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM4FUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6BF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HFV7XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25JBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0YNNV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MAKK6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P70IT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP2Z6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V61LZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YWP64R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3S9AI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7PGHH' => 'arhy', 'AT2G32150' => 'ath', 'AT3G62040' => 'ath', 'AT5G02230' => 'ath', 'AT5G59480' => 'ath', 'AT5G59490' => 'ath', 'ATR0332G060' => 'atr', 'ATR0559G190' => 'atr', 'ATR0693G294' => 'atr', 'Atru.chr3.3975' => 'acertr', 'Atru.chr3.3976' => 'acertr', 'Atru.chr3.3977' => 'acertr', 'Atru.chr4.2498' => 'acertr', 'Atru.chr5.838' => 'acertr', 'Atru.chr8.1990' => 'acertr', 'Atru.chr8.1991' => 'acertr', 'Atru.chr8.1992' => 'acertr', 'AUR62001759' => 'cqu', 'AUR62009545' => 'cqu', 'AUR62010474' => 'cqu', 'AUR62025820' => 'cqu', 'AUR62030422' => 'cqu', 'AUR62033605' => 'cqu', 'AUR62038615' => 'cqu', 'AUR62041347' => 'cqu', 'BcaB01g04574' => 'bca', 'BcaB02g09263' => 'bca', 'BcaB02g10453' => 'bca', 'BcaB05g22513' => 'bca', 'BcaB08g36253' => 'bca', 'BcaB08g36254' => 'bca', 'BcaC01g06519' => 'bca', 'BcaC02g11889' => 'bca', 'BcaC03g14010' => 'bca', 'BcaC03g18439' => 'bca', 'BcaC04g19765' => 'bca', 'BcaC09g48432' => 'bca', 'BcaNung07302' => 'bca', 'BolC2t06040H' => 'bol', 'BolC2t07346H' => 'bol', 'BolC3t13817H' => 'bol', 'BolC4t22625H' => 'bol', 'BolC4t23297H' => 'bol', 'BolC8t51278H' => 'bol', 'BolC9t58050H' => 'bol', 'BolC9t58051H' => 'bol', 'BolC9t60163H' => 'bol', 'BraA02t04712Z' => 'bra', 'BraA02t05791Z' => 'bra', 'BraA03t10483Z' => 'bra', 'BraA05t19795Z' => 'bra', 'BraA05t20276Z' => 'bra', 'BraA09t40827Z' => 'bra', 'BraA10t43750Z' => 'bra', 'BraA10t43751Z' => 'bra', 'BraA10t45370Z' => 'bra', 'C02p00400' => 'bna', 'C02p12460' => 'bna', 'C03p13680' => 'bna', 'C04p10270' => 'bna', 'C04p17500' => 'bna', 'C08p37010' => 'bna', 'C09p51880' => 'bna', 'C09p51890' => 'bna', 'C09p74300' => 'bna', 'CAN.G179.26' => 'can', 'CAN.G3384.1' => 'can', 'CAN.G394.68' => 'can', 'CAN.G907.13' => 'can', 'CANSAT11G0012' => 'cansat', 'CANSAT25G1586' => 'cansat', 'CANSAT35G0735' => 'cansat', 'CANSAT54G0556' => 'cansat', 'CANSAT64G0356' => 'cansat', 'CANSAT78G2042' => 'cansat', 'CARHR125920' => 'chi', 'CARHR131910' => 'chi', 'CARHR172390' => 'chi', 'CARHR211140' => 'chi', 'CARHR285850' => 'chi', 'CARHR285860' => 'chi', 'Carub.0004s1347' => 'cru', 'Carub.0004s1960' => 'cru', 'Carub.0005s2880' => 'cru', 'Carub.0006s0107' => 'cru', 'Carub.0008s2015' => 'cru', 'Carub.0008s2016' => 'cru', 'Carub.0008s2017' => 'cru', 'Ca_01315_v3' => 'car', 'Ca_05063_v3' => 'car', 'Ca_10231_v3' => 'car', 'Ca_10913_v3' => 'car', 'Ca_19156_v3' => 'car', 'Ca_23644_v3' => 'car', 'Ca_26735_v3' => 'car', 'Cc01_g13130' => 'ccan', 'Cc02_g21690' => 'ccan', 'Cc03_g03600' => 'ccan', 'Cc06_g02510' => 'ccan', 'CDE02G1265' => 'cde', 'CDE05G0415' => 'cde', 'CDE08G1082' => 'cde', 'Cfa005780' => 'cfa', 'Cfa011522' => 'cfa', 'Cfa011523' => 'cfa', 'Cfa015627' => 'cfa', 'Cfa017359' => 'cfa', 'Ciclev10005687m.g' => 'ccl', 'Ciclev10012173m.g' => 'ccl', 'Ciclev10021621m.g' => 'ccl', 'Ciclev10028968m.g' => 'ccl', 'Ciclev10029907m.g' => 'ccl', 'CiPaw.01G164800' => 'cil', 'CiPaw.07G083700' => 'cil', 'CiPaw.07G127000' => 'cil', 'CiPaw.07G136900' => 'cil', 'CiPaw.08G081700' => 'cil', 'CiPaw.09G194600' => 'cil', 'CiPaw.10G146500' => 'cil', 'CiPaw.13G091500' => 'cil', 'CiPaw.13G091600' => 'cil', 'ClCG00G003390' => 'cla', 'ClCG01G007220' => 'cla', 'ClCG03G001370' => 'cla', 'ClCG04G008100' => 'cla', 'ClCG06G006110' => 'cla', 'ClCG06G006130' => 'cla', 'ClCG10G021210' => 'cla', 'COL.COLO4_07648' => 'col', 'COL.COLO4_07650' => 'col', 'COL.COLO4_07651' => 'col', 'COL.COLO4_14780' => 'col', 'COL.COLO4_18546' => 'col', 'COL.COLO4_18547' => 'col', 'COL.COLO4_23103' => 'col', 'COL.COLO4_30419' => 'col', 'COL.COLO4_34232' => 'col', 'Cpa.g.sc169.20' => 'cpa', 'Cpa.g.sc57.45' => 'cpa', 'Cpa.g.sc58.124' => 'cpa', 'Cpa.g.sc58.125' => 'cpa', 'Cpa.g.sc81.118' => 'cpa', 'Cpa.g.sc81.119' => 'cpa', 'Cre12.g524700' => 'cre', 'CsaV3_1G034430' => 'csa', 'CsaV3_1G034440' => 'csa', 'CsaV3_1G034450' => 'csa', 'CsaV3_3G034830' => 'csa', 'CsaV3_4G025090' => 'csa', 'CsaV3_5G018660' => 'csa', 'CsaV3_6G038160' => 'csa', 'CSS0003447' => 'camsi', 'CSS0017840' => 'camsi', 'CSS0019260' => 'camsi', 'CSS0040375' => 'camsi', 'CSS0042533' => 'camsi', 'DCAR_005960' => 'dca', 'DCAR_012104' => 'dca', 'DCAR_012105' => 'dca', 'DCAR_012293' => 'dca', 'DCAR_015632' => 'dca', 'DCAR_024602' => 'dca', 'DCAR_028752' => 'dca', 'Dinv06261' => 'din', 'Dinv13982' => 'din', 'Dinv17029' => 'din', 'Dinv18463' => 'din', 'Dinv33181' => 'din', 'Dinv35585' => 'din', 'Dinv37161' => 'din', 'Dinv42977' => 'din', 'Dinv43122' => 'din', 'Dinv44517' => 'din', 'Duzib093G0256' => 'dzi', 'Duzib106G1254' => 'dzi', 'Duzib128G1789' => 'dzi', 'Duzib133G0633' => 'dzi', 'Duzib138G0510' => 'dzi', 'Duzib150G1084' => 'dzi', 'Duzib168G0488' => 'dzi', 'Duzib168G1523' => 'dzi', 'Duzib170G0133' => 'dzi', 'ECA234G1433' => 'eca', 'ECA236G1432' => 'eca', 'ECA236G2256' => 'eca', 'ECA236G2365' => 'eca', 'ECA236G4830' => 'eca', 'ECA248G1505' => 'eca', 'EL10Ac3g06431' => 'bvu', 'EL10Ac5g12577' => 'bvu', 'EL10Ac6g13533' => 'bvu', 'EL10Ac7g16045' => 'bvu', 'Eucgr.A01281' => 'egr', 'Eucgr.B02326' => 'egr', 'Eucgr.H03532' => 'egr', 'Eucgr.K00553' => 'egr', 'Eucgr.K03116' => 'egr', 'FAN02G3963' => 'fan', 'FAN05G0438' => 'fan', 'FAN09G2434' => 'fan', 'FAN12G3984' => 'fan', 'FAN14G0798' => 'fan', 'FAN17G0652' => 'fan', 'FAN19G1988' => 'fan', 'FAN22G0632' => 'fan', 'FAN23G0387' => 'fan', 'FAN26G1323' => 'fan', 'FAN28G0666' => 'fan', 'FvH4_1g26080' => 'fve', 'FvH4_3g36780' => 'fve', 'FvH4_4g15270' => 'fve', 'FvH4_6g13490' => 'fve', 'Glyma.01G098700' => 'gma', 'Glyma.03G065900' => 'gma', 'Glyma.03G073754' => 'gma', 'Glyma.03G073758' => 'gma', 'Glyma.03G083200' => 'gma', 'Glyma.03G225500' => 'gma', 'Glyma.05G037766' => 'gma', 'Glyma.07G133500' => 'gma', 'Glyma.10G139400' => 'gma', 'Glyma.10G248900' => 'gma', 'Glyma.11G137800' => 'gma', 'Glyma.12G061300' => 'gma', 'Glyma.13G337900' => 'gma', 'Glyma.15G036600' => 'gma', 'Glyma.18G182800' => 'gma', 'Glyma.19G222500' => 'gma', 'Glyma.20G144800' => 'gma', 'Gohir.A01G222000' => 'ghi', 'Gohir.A03G044000' => 'ghi', 'Gohir.A03G044100' => 'ghi', 'Gohir.A04G083100' => 'ghi', 'Gohir.A07G127200' => 'ghi', 'Gohir.A07G132400' => 'ghi', 'Gohir.A08G000700' => 'ghi', 'Gohir.A11G327300' => 'ghi', 'Gohir.D01G211500' => 'ghi', 'Gohir.D03G123400' => 'ghi', 'Gohir.D03G123500' => 'ghi', 'Gohir.D04G121800' => 'ghi', 'Gohir.D07G131500' => 'ghi', 'Gohir.D07G136600' => 'ghi', 'Gohir.D08G011600' => 'ghi', 'Gohir.D11G346200' => 'ghi', 'Gorai.001G142800' => 'gra', 'Gorai.001G148700' => 'gra', 'Gorai.002G257300' => 'gra', 'Gorai.003G130000' => 'gra', 'Gorai.003G130100' => 'gra', 'Gorai.004G005300' => 'gra', 'Gorai.007G376500' => 'gra', 'Gorai.012G104700' => 'gra', 'GSVIVG01017946001' => 'vvi', 'GSVIVG01024928001' => 'vvi', 'GSVIVG01028227001' => 'vvi', 'GSVIVG01034151001' => 'vvi', 'HanXRQChr05g0135031' => 'han', 'HanXRQChr05g0135041' => 'han', 'HanXRQChr05g0140021' => 'han', 'HanXRQChr06g0178981' => 'han', 'HanXRQChr07g0188251' => 'han', 'HanXRQChr08g0235311' => 'han', 'HanXRQChr09g0271011' => 'han', 'HanXRQChr10g0293321' => 'han', 'HanXRQChr13g0388171' => 'han', 'Haze_00916' => 'cav', 'Haze_05063' => 'cav', 'Haze_20814' => 'cav', 'Haze_24128' => 'cav', 'Hma1.2p1_0745F.1_g212010' => 'hma', 'Hma1.2p1_0757F.1_g213260' => 'hma', 'Hma1.2p1_0936F.1_g238840' => 'hma', 'Hma1.2p1_1735F.1_g299890' => 'hma', 'Hma1.2p1_1861F.1_g305685' => 'hma', 'HPP92_003397' => 'vpl', 'HPP92_012597' => 'vpl', 'HPP92_015520' => 'vpl', 'HPP92_015539' => 'vpl', 'HPP92_020373' => 'vpl', 'Hund04938' => 'sun', 'Hund10677' => 'sun', 'Hund11033' => 'sun', 'Hund12155' => 'sun', 'Lalb_Chr01g0022551' => 'lal', 'Lalb_Chr03g0042341' => 'lal', 'Lalb_Chr07g0192931' => 'lal', 'Lalb_Chr12g0209551' => 'lal', 'Lalb_Chr19g0125251' => 'lal', 'Lalb_Chr19g0137891' => 'lal', 'Lalb_Chr21g0304641' => 'lal', 'Lalb_Chr21g0309881' => 'lal', 'Lj1A5T12' => 'lonja', 'Lj1C148G10' => 'lonja', 'Lj2A93T83' => 'lonja', 'Lj3A738G68' => 'lonja', 'Lj3C966T1' => 'lonja', 'Lj3g0018958' => 'lja', 'Lj3g0021831' => 'lja', 'Lj3g0025443' => 'lja', 'Lj4g0026809' => 'lja', 'Lj5g0012558' => 'lja', 'Lj5g0021586' => 'lja', 'Lsat_1_v5_gn_5_156840' => 'lsa', 'Lsat_1_v5_gn_8_73460' => 'lsa', 'Lsat_1_v5_gn_8_73481' => 'lsa', 'Lsat_1_v5_gn_9_31601' => 'lsa', 'Lsat_1_v5_gn_9_77320' => 'lsa', 'Manes.01G171300' => 'mes', 'Manes.01G171400' => 'mes', 'Manes.01G236100' => 'mes', 'Manes.02G130500' => 'mes', 'Manes.02G130600' => 'mes', 'Manes.03G180200' => 'mes', 'Manes.05G007000' => 'mes', 'Manes.08G084400' => 'mes', 'Manes.09G092600' => 'mes', 'Manes.15G027900' => 'mes', 'MBI04_g40948_MAGBIO' => 'mbi', 'MBI14_g12123_MAGBIO' => 'mbi', 'MBI18_g28915_MAGBIO' => 'mbi', 'MCO09G053' => 'mco', 'MCO11G782' => 'mco', 'MCO15G215' => 'mco', 'MD03G1088500' => 'mdo', 'MD03G1088600' => 'mdo', 'MD04G1130800' => 'mdo', 'MD09G1291700' => 'mdo', 'MD11G1097500' => 'mdo', 'MD11G1097600' => 'mdo', 'MD12G1143900' => 'mdo', 'MD13G1191400' => 'mdo', 'MD16G1191500' => 'mdo', 'Medtr1g085570' => 'mtr', 'Medtr1g104610' => 'mtr', 'Medtr2g097520' => 'mtr', 'Medtr4g021800' => 'mtr', 'Medtr4g021825' => 'mtr', 'Medtr4g064270' => 'mtr', 'Medtr4g064380' => 'mtr', 'Medtr7g062150' => 'mtr', 'MELO3C003138.2' => 'cme', 'MELO3C005187.2' => 'cme', 'MELO3C009252.2' => 'cme', 'MELO3C014481.2' => 'cme', 'MELO3C020616.2' => 'cme', 'MELO3C020617.2' => 'cme', 'MELO3C020618.2' => 'cme', 'Migut.G00328' => 'egut', 'Migut.J00320' => 'egut', 'Migut.L01000' => 'egut', 'Migut.L01953' => 'egut', 'MSTRG.10253' => 'ama', 'MSTRG.19077' => 'ama', 'MSTRG.26780' => 'ama', 'MSTRG.4023' => 'ama', 'MSTRG.5655' => 'ama', 'MSTRG.9992' => 'ama', 'Nitab4.5_0000043g0310' => 'nta', 'Nitab4.5_0000463g0080' => 'nta', 'Nitab4.5_0000705g0170' => 'nta', 'Nitab4.5_0001326g0060' => 'nta', 'Nitab4.5_0001628g0030' => 'nta', 'Nitab4.5_0002103g0110' => 'nta', 'Nitab4.5_0002946g0030' => 'nta', 'Nitab4.5_0004639g0030' => 'nta', 'Nn2g11149' => 'nnu', 'Nn2g13389' => 'nnu', 'Nn4g25326' => 'nnu', 'Nn4g26290' => 'nnu', 'Nn5g29865' => 'nnu', 'Oeu004163.1' => 'oeu', 'Oeu006901.1' => 'oeu', 'Oeu010096.1' => 'oeu', 'Oeu024340.1' => 'oeu', 'Oeu048369.1' => 'oeu', 'Os01g0973000' => 'osa', 'Os03g0273800' => 'osa', 'Os03g0701200' => 'osa', 'Os03g0834050' => 'osa', 'Os07g0634400' => 'osa', 'Peaxi162Scf00092g01414' => 'pax', 'Peaxi162Scf00165g00818' => 'pax', 'Peaxi162Scf00309g00516' => 'pax', 'Peaxi162Scf00774g00218' => 'pax', 'PGR004G1824' => 'pgr', 'PGR004G2606' => 'pgr', 'PGR031G2716' => 'pgr', 'PGR102G2460' => 'pgr', 'PGR142G2599' => 'pgr', 'PGSC0003DMG400000843' => 'stu', 'PGSC0003DMG400008829' => 'stu', 'PGSC0003DMG400030418' => 'stu', 'PGSC0003DMG400031834' => 'stu', 'PGSC0003DMG401028300' => 'stu', 'PGSC0003DMG402028300' => 'stu', 'Phvul.001G219300' => 'pvu', 'Phvul.007G056000' => 'pvu', 'Phvul.007G208000' => 'pvu', 'Phvul.008G119500' => 'pvu', 'Phvul.010G011200' => 'pvu', 'Phvul.010G014800' => 'pvu', 'Phvul.011G062900' => 'pvu', 'Phvul.L007043' => 'pvu', 'Potri.001G242300' => 'ptr', 'Potri.002G185300' => 'ptr', 'Potri.006G086900' => 'ptr', 'Potri.008G151700' => 'ptr', 'Potri.009G033500' => 'ptr', 'Potri.010G089300' => 'ptr', 'Potri.014G110800' => 'ptr', 'Pp3c27_8130' => 'ppa', 'Pp3c6_27410' => 'ppa', 'PRCOL_00001659' => 'pco', 'PRCOL_00001927' => 'pco', 'PRCOL_00003649' => 'pco', 'Prupe.1G011600' => 'ppe', 'Prupe.3G000800' => 'ppe', 'Prupe.3G001100' => 'ppe', 'Prupe.6G072700' => 'ppe', 'Prupe.6G072800' => 'ppe', 'Prupe.6G257300' => 'ppe', 'Prupe.8G033000' => 'ppe', 'Psat0s2633g0080' => 'psa', 'Psat0s3396g0080' => 'psa', 'Psat0s3396g0200' => 'psa', 'Psat3g139080' => 'psa', 'Psat5g285080' => 'psa', 'Psat6g157760' => 'psa', 'Psat6g208440' => 'psa', 'Psat7g215320' => 'psa', 'Psat7g215400' => 'psa', 'Psat7g235600' => 'psa', 'Psat7g235760' => 'psa', 'PSO063G4603' => 'pso', 'PSO210G0182' => 'pso', 'PSO210G0196' => 'pso', 'PSO339G0394' => 'pso', 'PSO339G4127' => 'pso', 'PSO513G0064' => 'pso', 'PSO761G0079' => 'pso', 'QL01p031003' => 'qlo', 'QL01p031078' => 'qlo', 'QL06p003004' => 'qlo', 'QL07p048731' => 'qlo', 'QL09p037427' => 'qlo', 'RcHm_v2.0_Chr3g0466361' => 'rch', 'RcHm_v2.0_Chr3g0485571' => 'rch', 'RcHm_v2.0_Chr4g0416551' => 'rch', 'RcHm_v2.0_Chr5g0065831' => 'rch', 'Rhsim01G0230500' => 'rsi', 'Rhsim05G0194000' => 'rsi', 'Rhsim08G0250400' => 'rsi', 'Sabra02G0131000' => 'sbr', 'Sabra06G0066300' => 'sbr', 'Sabra08G0115500' => 'sbr', 'Sabra09G0023900' => 'sbr', 'Sabra10G0054000' => 'sbr', 'Sabra14G0081500' => 'sbr', 'Sabra16G0147100' => 'sbr', 'SalBow2G2957' => 'sbo', 'SalBow4G3320' => 'sbo', 'SalBow8G1894' => 'sbo', 'Sc07g0007950' => 'sci', 'Sc12g0001360' => 'sci', 'Sc13g0004330' => 'sci', 'Sc20g0005010' => 'sci', 'Sed0000361' => 'sed', 'Sed0001706' => 'sed', 'Sed0002422' => 'sed', 'Sed0004029' => 'sed', 'Sed0004602' => 'sed', 'Sed0004943' => 'sed', 'Sed0008646' => 'sed', 'Sed0023313' => 'sed', 'Sed0024843' => 'sed', 'SEGI_00081' => 'sgi', 'SEGI_00947' => 'sgi', 'SEGI_04046' => 'sgi', 'SEGI_06880' => 'sgi', 'SEGI_09736' => 'sgi', 'SEGI_12741' => 'sgi', 'SEGI_14530' => 'sgi', 'SEGI_20705' => 'sgi', 'SEGI_26088' => 'sgi', 'SEGI_28323' => 'sgi', 'SEGI_33343' => 'sgi', 'SGA_v2.0_scaffold126G33775' => 'sas', 'SGA_v2.0_scaffold2G01337' => 'sas', 'SGA_v2.0_scaffold38G15006' => 'sas', 'SGA_v2.0_scaffold39G15264' => 'sas', 'SGA_v2.0_scaffold453G51880' => 'sas', 'SHI12696' => 'shi', 'SMO367G1096' => 'smo', 'Solyc01g068630.3' => 'sly', 'Solyc05g011880.3' => 'sly', 'Solyc06g076300.3' => 'sly', 'Solyc09g010940.4' => 'sly', 'Solyc09g075890.3' => 'sly', 'Sopen01g030560' => 'spe', 'Sopen05g006630' => 'spe', 'Sopen06g032720' => 'spe', 'Sopen09g005660' => 'spe', 'Sopen09g030690' => 'spe', 'Sp4g14540' => 'spa', 'Sp4g20030' => 'spa', 'Sp5g01320' => 'spa', 'Sp6g21170' => 'spa', 'Sp6g21180' => 'spa', 'Sp6g21190' => 'spa', 'Sp6g40220' => 'spa', 'TAR362G0122' => 'tar', 'TAR362G1338' => 'tar', 'TAR369G0590' => 'tar', 'TAR371G0824' => 'tar', 'TAR622G1429' => 'tar', 'TAR623G0734' => 'tar', 'TAR625G0441' => 'tar', 'TAR629G0976' => 'tar', 'TAR633G1195' => 'tar', 'TAR636G2660' => 'tar', 'THA.LOC104799440' => 'tha', 'THA.LOC104800966' => 'tha', 'THA.LOC104806559' => 'tha', 'THA.LOC104810765' => 'tha', 'THA.LOC104816266' => 'tha', 'THA.LOC104817419' => 'tha', 'THA.LOC104827021' => 'tha', 'Thecc.01G327400' => 'tca', 'Thecc.04G229200' => 'tca', 'Thecc.05G037400' => 'tca', 'Thecc.09G318600' => 'tca', 'Thecc.09G318700' => 'tca', 'Thhalv10006238m.g' => 'esa', 'Thhalv10014321m.g' => 'esa', 'Thhalv10014335m.g' => 'esa', 'Thhalv10015826m.g' => 'esa', 'Thhalv10017107m.g' => 'esa', 'Thhalv10017180m.g' => 'esa', 'Thhalv10029339m.g' => 'esa', 'TPR.G1699' => 'tpr', 'TPR.G23609' => 'tpr', 'TPR.G3081' => 'tpr', 'TPR.G40397' => 'tpr', 'TPR.G5522' => 'tpr', 'TPR.G5618' => 'tpr', 'TPR.G5626' => 'tpr', 'TWI09G1632' => 'twi', 'TWI23G1230' => 'twi', 'TWI53G1064' => 'twi', 'TWI59G0751' => 'twi', 'TWI74G0947' => 'twi', 'TWI77G0337' => 'twi', 'TWI79G1254' => 'twi', 'unitig_0.g2341' => 'ugi', 'unitig_26.g10006' => 'ugi', 'unitig_26.g10008' => 'ugi', 'unitig_26.g9192' => 'ugi', 'vmacro14547' => 'vma', 'vmacro15333' => 'vma', 'vmacro18743' => 'vma', 'vmacro20166' => 'vma', 'VMungo0331G0523' => 'vmu', 'VMungo0331G1202' => 'vmu', 'VMungo0720G1228' => 'vmu', 'VMungo0720G1514' => 'vmu', 'VMungo1080G0169' => 'vmu', 'VMungo1127G1475' => 'vmu', 'VMungo1383G1208' => 'vmu', 'VMungo1383G1698' => 'vmu', 'Zm00001eb012270' => 'zma', 'Zm00001eb054100' => 'zma', 'Zm00001eb063350' => 'zma', 'Zm00001eb328560' => 'zma', 'Zm00001eb342820' => 'zma', 'Zm00001eb362210' => 'zma', 'Zm00001eb397730' => 'zma', 'Zm00001eb399750' => 'zma' ) $gf_id = 'HOM05D000959' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000959' ) $data_identifier = 'HOM05D000959' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 5, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 5, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 10, 'mbi' => (int) 3, 'mco' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 2, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 3, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 11, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399750' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000959', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '622', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p07100' => 'bna', 'A03p11720' => 'bna', 'A05p08300' => 'bna', 'A05p13380' => 'bna', 'A09p54130' => 'bna', 'A10p16690' => 'bna', 'A10p16700' => 'bna', 'A10p33390' => 'bna', 'Aa31LG10G16020' => 'aar', 'Aa31LG1G11810' => 'aar', 'Aa31LG1G11830' => 'aar', 'Aa31LG1G22510' => 'aar', 'Aa31LG5G4890' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5793' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2310' => 'aag', 'Actinidia08499' => 'ach', 'Actinidia11262' => 'ach', 'Actinidia23926' => 'ach', 'Actinidia34420' => 'ach', 'Actinidia36970' => 'ach', 'Ah.02g111220' => 'amhyb', 'Ah.15g097750' => 'amhyb', 'AL4G27500' => 'aly', 'AL6G11470' => 'aly', 'AL8G35950' => 'aly', 'AL8G35960' => 'aly', 'AL8G35970' => 'aly', 'Aqoxy1G00912' => 'aox', 'Aqoxy2G02253' => 'aox', 'Aqoxy2G02411' => 'aox', 'Aqoxy5G00485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BZ66YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K8ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM4FUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6BF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HFV7XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25JBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0YNNV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MAKK6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P70IT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP2Z6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V61LZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YWP64R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3S9AI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7PGHH' => 'arhy', 'AT2G32150' => 'ath', 'AT3G62040' => 'ath', 'AT5G02230' => 'ath', 'AT5G59480' => 'ath', 'AT5G59490' => 'ath', 'ATR0332G060' => 'atr', 'ATR0559G190' => 'atr', 'ATR0693G294' => 'atr', 'Atru.chr3.3975' => 'acertr', 'Atru.chr3.3976' => 'acertr', 'Atru.chr3.3977' => 'acertr', 'Atru.chr4.2498' => 'acertr', 'Atru.chr5.838' => 'acertr', 'Atru.chr8.1990' => 'acertr', 'Atru.chr8.1991' => 'acertr', 'Atru.chr8.1992' => 'acertr', 'AUR62001759' => 'cqu', 'AUR62009545' => 'cqu', 'AUR62010474' => 'cqu', 'AUR62025820' => 'cqu', 'AUR62030422' => 'cqu', 'AUR62033605' => 'cqu', 'AUR62038615' => 'cqu', 'AUR62041347' => 'cqu', 'BcaB01g04574' => 'bca', 'BcaB02g09263' => 'bca', 'BcaB02g10453' => 'bca', 'BcaB05g22513' => 'bca', 'BcaB08g36253' => 'bca', 'BcaB08g36254' => 'bca', 'BcaC01g06519' => 'bca', 'BcaC02g11889' => 'bca', 'BcaC03g14010' => 'bca', 'BcaC03g18439' => 'bca', 'BcaC04g19765' => 'bca', 'BcaC09g48432' => 'bca', 'BcaNung07302' => 'bca', 'BolC2t06040H' => 'bol', 'BolC2t07346H' => 'bol', 'BolC3t13817H' => 'bol', 'BolC4t22625H' => 'bol', 'BolC4t23297H' => 'bol', 'BolC8t51278H' => 'bol', 'BolC9t58050H' => 'bol', 'BolC9t58051H' => 'bol', 'BolC9t60163H' => 'bol', 'BraA02t04712Z' => 'bra', 'BraA02t05791Z' => 'bra', 'BraA03t10483Z' => 'bra', 'BraA05t19795Z' => 'bra', 'BraA05t20276Z' => 'bra', 'BraA09t40827Z' => 'bra', 'BraA10t43750Z' => 'bra', 'BraA10t43751Z' => 'bra', 'BraA10t45370Z' => 'bra', 'C02p00400' => 'bna', 'C02p12460' => 'bna', 'C03p13680' => 'bna', 'C04p10270' => 'bna', 'C04p17500' => 'bna', 'C08p37010' => 'bna', 'C09p51880' => 'bna', 'C09p51890' => 'bna', 'C09p74300' => 'bna', 'CAN.G179.26' => 'can', 'CAN.G3384.1' => 'can', 'CAN.G394.68' => 'can', 'CAN.G907.13' => 'can', 'CANSAT11G0012' => 'cansat', 'CANSAT25G1586' => 'cansat', 'CANSAT35G0735' => 'cansat', 'CANSAT54G0556' => 'cansat', 'CANSAT64G0356' => 'cansat', 'CANSAT78G2042' => 'cansat', 'CARHR125920' => 'chi', 'CARHR131910' => 'chi', 'CARHR172390' => 'chi', 'CARHR211140' => 'chi', 'CARHR285850' => 'chi', 'CARHR285860' => 'chi', 'Carub.0004s1347' => 'cru', 'Carub.0004s1960' => 'cru', 'Carub.0005s2880' => 'cru', 'Carub.0006s0107' => 'cru', 'Carub.0008s2015' => 'cru', 'Carub.0008s2016' => 'cru', 'Carub.0008s2017' => 'cru', 'Ca_01315_v3' => 'car', 'Ca_05063_v3' => 'car', 'Ca_10231_v3' => 'car', 'Ca_10913_v3' => 'car', 'Ca_19156_v3' => 'car', 'Ca_23644_v3' => 'car', 'Ca_26735_v3' => 'car', 'Cc01_g13130' => 'ccan', 'Cc02_g21690' => 'ccan', 'Cc03_g03600' => 'ccan', 'Cc06_g02510' => 'ccan', 'CDE02G1265' => 'cde', 'CDE05G0415' => 'cde', 'CDE08G1082' => 'cde', 'Cfa005780' => 'cfa', 'Cfa011522' => 'cfa', 'Cfa011523' => 'cfa', 'Cfa015627' => 'cfa', 'Cfa017359' => 'cfa', 'Ciclev10005687m.g' => 'ccl', 'Ciclev10012173m.g' => 'ccl', 'Ciclev10021621m.g' => 'ccl', 'Ciclev10028968m.g' => 'ccl', 'Ciclev10029907m.g' => 'ccl', 'CiPaw.01G164800' => 'cil', 'CiPaw.07G083700' => 'cil', 'CiPaw.07G127000' => 'cil', 'CiPaw.07G136900' => 'cil', 'CiPaw.08G081700' => 'cil', 'CiPaw.09G194600' => 'cil', 'CiPaw.10G146500' => 'cil', 'CiPaw.13G091500' => 'cil', 'CiPaw.13G091600' => 'cil', 'ClCG00G003390' => 'cla', 'ClCG01G007220' => 'cla', 'ClCG03G001370' => 'cla', 'ClCG04G008100' => 'cla', 'ClCG06G006110' => 'cla', 'ClCG06G006130' => 'cla', 'ClCG10G021210' => 'cla', 'COL.COLO4_07648' => 'col', 'COL.COLO4_07650' => 'col', 'COL.COLO4_07651' => 'col', 'COL.COLO4_14780' => 'col', 'COL.COLO4_18546' => 'col', 'COL.COLO4_18547' => 'col', 'COL.COLO4_23103' => 'col', 'COL.COLO4_30419' => 'col', 'COL.COLO4_34232' => 'col', 'Cpa.g.sc169.20' => 'cpa', 'Cpa.g.sc57.45' => 'cpa', 'Cpa.g.sc58.124' => 'cpa', 'Cpa.g.sc58.125' => 'cpa', 'Cpa.g.sc81.118' => 'cpa', 'Cpa.g.sc81.119' => 'cpa', 'Cre12.g524700' => 'cre', 'CsaV3_1G034430' => 'csa', 'CsaV3_1G034440' => 'csa', 'CsaV3_1G034450' => 'csa', 'CsaV3_3G034830' => 'csa', 'CsaV3_4G025090' => 'csa', 'CsaV3_5G018660' => 'csa', 'CsaV3_6G038160' => 'csa', 'CSS0003447' => 'camsi', 'CSS0017840' => 'camsi', 'CSS0019260' => 'camsi', 'CSS0040375' => 'camsi', 'CSS0042533' => 'camsi', 'DCAR_005960' => 'dca', 'DCAR_012104' => 'dca', 'DCAR_012105' => 'dca', 'DCAR_012293' => 'dca', 'DCAR_015632' => 'dca', 'DCAR_024602' => 'dca', 'DCAR_028752' => 'dca', 'Dinv06261' => 'din', 'Dinv13982' => 'din', 'Dinv17029' => 'din', 'Dinv18463' => 'din', 'Dinv33181' => 'din', 'Dinv35585' => 'din', 'Dinv37161' => 'din', 'Dinv42977' => 'din', 'Dinv43122' => 'din', 'Dinv44517' => 'din', 'Duzib093G0256' => 'dzi', 'Duzib106G1254' => 'dzi', 'Duzib128G1789' => 'dzi', 'Duzib133G0633' => 'dzi', 'Duzib138G0510' => 'dzi', 'Duzib150G1084' => 'dzi', 'Duzib168G0488' => 'dzi', 'Duzib168G1523' => 'dzi', 'Duzib170G0133' => 'dzi', 'ECA234G1433' => 'eca', 'ECA236G1432' => 'eca', 'ECA236G2256' => 'eca', 'ECA236G2365' => 'eca', 'ECA236G4830' => 'eca', 'ECA248G1505' => 'eca', 'EL10Ac3g06431' => 'bvu', 'EL10Ac5g12577' => 'bvu', 'EL10Ac6g13533' => 'bvu', 'EL10Ac7g16045' => 'bvu', 'Eucgr.A01281' => 'egr', 'Eucgr.B02326' => 'egr', 'Eucgr.H03532' => 'egr', 'Eucgr.K00553' => 'egr', 'Eucgr.K03116' => 'egr', 'FAN02G3963' => 'fan', 'FAN05G0438' => 'fan', 'FAN09G2434' => 'fan', 'FAN12G3984' => 'fan', 'FAN14G0798' => 'fan', 'FAN17G0652' => 'fan', 'FAN19G1988' => 'fan', 'FAN22G0632' => 'fan', 'FAN23G0387' => 'fan', 'FAN26G1323' => 'fan', 'FAN28G0666' => 'fan', 'FvH4_1g26080' => 'fve', 'FvH4_3g36780' => 'fve', 'FvH4_4g15270' => 'fve', 'FvH4_6g13490' => 'fve', 'Glyma.01G098700' => 'gma', 'Glyma.03G065900' => 'gma', 'Glyma.03G073754' => 'gma', 'Glyma.03G073758' => 'gma', 'Glyma.03G083200' => 'gma', 'Glyma.03G225500' => 'gma', 'Glyma.05G037766' => 'gma', 'Glyma.07G133500' => 'gma', 'Glyma.10G139400' => 'gma', 'Glyma.10G248900' => 'gma', 'Glyma.11G137800' => 'gma', 'Glyma.12G061300' => 'gma', 'Glyma.13G337900' => 'gma', 'Glyma.15G036600' => 'gma', 'Glyma.18G182800' => 'gma', 'Glyma.19G222500' => 'gma', 'Glyma.20G144800' => 'gma', 'Gohir.A01G222000' => 'ghi', 'Gohir.A03G044000' => 'ghi', 'Gohir.A03G044100' => 'ghi', 'Gohir.A04G083100' => 'ghi', 'Gohir.A07G127200' => 'ghi', 'Gohir.A07G132400' => 'ghi', 'Gohir.A08G000700' => 'ghi', 'Gohir.A11G327300' => 'ghi', 'Gohir.D01G211500' => 'ghi', 'Gohir.D03G123400' => 'ghi', 'Gohir.D03G123500' => 'ghi', 'Gohir.D04G121800' => 'ghi', 'Gohir.D07G131500' => 'ghi', 'Gohir.D07G136600' => 'ghi', 'Gohir.D08G011600' => 'ghi', 'Gohir.D11G346200' => 'ghi', 'Gorai.001G142800' => 'gra', 'Gorai.001G148700' => 'gra', 'Gorai.002G257300' => 'gra', 'Gorai.003G130000' => 'gra', 'Gorai.003G130100' => 'gra', 'Gorai.004G005300' => 'gra', 'Gorai.007G376500' => 'gra', 'Gorai.012G104700' => 'gra', 'GSVIVG01017946001' => 'vvi', 'GSVIVG01024928001' => 'vvi', 'GSVIVG01028227001' => 'vvi', 'GSVIVG01034151001' => 'vvi', 'HanXRQChr05g0135031' => 'han', 'HanXRQChr05g0135041' => 'han', 'HanXRQChr05g0140021' => 'han', 'HanXRQChr06g0178981' => 'han', 'HanXRQChr07g0188251' => 'han', 'HanXRQChr08g0235311' => 'han', 'HanXRQChr09g0271011' => 'han', 'HanXRQChr10g0293321' => 'han', 'HanXRQChr13g0388171' => 'han', 'Haze_00916' => 'cav', 'Haze_05063' => 'cav', 'Haze_20814' => 'cav', 'Haze_24128' => 'cav', 'Hma1.2p1_0745F.1_g212010' => 'hma', 'Hma1.2p1_0757F.1_g213260' => 'hma', 'Hma1.2p1_0936F.1_g238840' => 'hma', 'Hma1.2p1_1735F.1_g299890' => 'hma', 'Hma1.2p1_1861F.1_g305685' => 'hma', 'HPP92_003397' => 'vpl', 'HPP92_012597' => 'vpl', 'HPP92_015520' => 'vpl', 'HPP92_015539' => 'vpl', 'HPP92_020373' => 'vpl', 'Hund04938' => 'sun', 'Hund10677' => 'sun', 'Hund11033' => 'sun', 'Hund12155' => 'sun', 'Lalb_Chr01g0022551' => 'lal', 'Lalb_Chr03g0042341' => 'lal', 'Lalb_Chr07g0192931' => 'lal', 'Lalb_Chr12g0209551' => 'lal', 'Lalb_Chr19g0125251' => 'lal', 'Lalb_Chr19g0137891' => 'lal', 'Lalb_Chr21g0304641' => 'lal', 'Lalb_Chr21g0309881' => 'lal', 'Lj1A5T12' => 'lonja', 'Lj1C148G10' => 'lonja', 'Lj2A93T83' => 'lonja', 'Lj3A738G68' => 'lonja', 'Lj3C966T1' => 'lonja', 'Lj3g0018958' => 'lja', 'Lj3g0021831' => 'lja', 'Lj3g0025443' => 'lja', 'Lj4g0026809' => 'lja', 'Lj5g0012558' => 'lja', 'Lj5g0021586' => 'lja', 'Lsat_1_v5_gn_5_156840' => 'lsa', 'Lsat_1_v5_gn_8_73460' => 'lsa', 'Lsat_1_v5_gn_8_73481' => 'lsa', 'Lsat_1_v5_gn_9_31601' => 'lsa', 'Lsat_1_v5_gn_9_77320' => 'lsa', 'Manes.01G171300' => 'mes', 'Manes.01G171400' => 'mes', 'Manes.01G236100' => 'mes', 'Manes.02G130500' => 'mes', 'Manes.02G130600' => 'mes', 'Manes.03G180200' => 'mes', 'Manes.05G007000' => 'mes', 'Manes.08G084400' => 'mes', 'Manes.09G092600' => 'mes', 'Manes.15G027900' => 'mes', 'MBI04_g40948_MAGBIO' => 'mbi', 'MBI14_g12123_MAGBIO' => 'mbi', 'MBI18_g28915_MAGBIO' => 'mbi', 'MCO09G053' => 'mco', 'MCO11G782' => 'mco', 'MCO15G215' => 'mco', 'MD03G1088500' => 'mdo', 'MD03G1088600' => 'mdo', 'MD04G1130800' => 'mdo', 'MD09G1291700' => 'mdo', 'MD11G1097500' => 'mdo', 'MD11G1097600' => 'mdo', 'MD12G1143900' => 'mdo', 'MD13G1191400' => 'mdo', 'MD16G1191500' => 'mdo', 'Medtr1g085570' => 'mtr', 'Medtr1g104610' => 'mtr', 'Medtr2g097520' => 'mtr', 'Medtr4g021800' => 'mtr', 'Medtr4g021825' => 'mtr', 'Medtr4g064270' => 'mtr', 'Medtr4g064380' => 'mtr', 'Medtr7g062150' => 'mtr', 'MELO3C003138.2' => 'cme', 'MELO3C005187.2' => 'cme', 'MELO3C009252.2' => 'cme', 'MELO3C014481.2' => 'cme', 'MELO3C020616.2' => 'cme', 'MELO3C020617.2' => 'cme', 'MELO3C020618.2' => 'cme', 'Migut.G00328' => 'egut', 'Migut.J00320' => 'egut', 'Migut.L01000' => 'egut', 'Migut.L01953' => 'egut', 'MSTRG.10253' => 'ama', 'MSTRG.19077' => 'ama', 'MSTRG.26780' => 'ama', 'MSTRG.4023' => 'ama', 'MSTRG.5655' => 'ama', 'MSTRG.9992' => 'ama', 'Nitab4.5_0000043g0310' => 'nta', 'Nitab4.5_0000463g0080' => 'nta', 'Nitab4.5_0000705g0170' => 'nta', 'Nitab4.5_0001326g0060' => 'nta', 'Nitab4.5_0001628g0030' => 'nta', 'Nitab4.5_0002103g0110' => 'nta', 'Nitab4.5_0002946g0030' => 'nta', 'Nitab4.5_0004639g0030' => 'nta', 'Nn2g11149' => 'nnu', 'Nn2g13389' => 'nnu', 'Nn4g25326' => 'nnu', 'Nn4g26290' => 'nnu', 'Nn5g29865' => 'nnu', 'Oeu004163.1' => 'oeu', 'Oeu006901.1' => 'oeu', 'Oeu010096.1' => 'oeu', 'Oeu024340.1' => 'oeu', 'Oeu048369.1' => 'oeu', 'Os01g0973000' => 'osa', 'Os03g0273800' => 'osa', 'Os03g0701200' => 'osa', 'Os03g0834050' => 'osa', 'Os07g0634400' => 'osa', 'Peaxi162Scf00092g01414' => 'pax', 'Peaxi162Scf00165g00818' => 'pax', 'Peaxi162Scf00309g00516' => 'pax', 'Peaxi162Scf00774g00218' => 'pax', 'PGR004G1824' => 'pgr', 'PGR004G2606' => 'pgr', 'PGR031G2716' => 'pgr', 'PGR102G2460' => 'pgr', 'PGR142G2599' => 'pgr', 'PGSC0003DMG400000843' => 'stu', 'PGSC0003DMG400008829' => 'stu', 'PGSC0003DMG400030418' => 'stu', 'PGSC0003DMG400031834' => 'stu', 'PGSC0003DMG401028300' => 'stu', 'PGSC0003DMG402028300' => 'stu', 'Phvul.001G219300' => 'pvu', 'Phvul.007G056000' => 'pvu', 'Phvul.007G208000' => 'pvu', 'Phvul.008G119500' => 'pvu', 'Phvul.010G011200' => 'pvu', 'Phvul.010G014800' => 'pvu', 'Phvul.011G062900' => 'pvu', 'Phvul.L007043' => 'pvu', 'Potri.001G242300' => 'ptr', 'Potri.002G185300' => 'ptr', 'Potri.006G086900' => 'ptr', 'Potri.008G151700' => 'ptr', 'Potri.009G033500' => 'ptr', 'Potri.010G089300' => 'ptr', 'Potri.014G110800' => 'ptr', 'Pp3c27_8130' => 'ppa', 'Pp3c6_27410' => 'ppa', 'PRCOL_00001659' => 'pco', 'PRCOL_00001927' => 'pco', 'PRCOL_00003649' => 'pco', 'Prupe.1G011600' => 'ppe', 'Prupe.3G000800' => 'ppe', 'Prupe.3G001100' => 'ppe', 'Prupe.6G072700' => 'ppe', 'Prupe.6G072800' => 'ppe', 'Prupe.6G257300' => 'ppe', 'Prupe.8G033000' => 'ppe', 'Psat0s2633g0080' => 'psa', 'Psat0s3396g0080' => 'psa', 'Psat0s3396g0200' => 'psa', 'Psat3g139080' => 'psa', 'Psat5g285080' => 'psa', 'Psat6g157760' => 'psa', 'Psat6g208440' => 'psa', 'Psat7g215320' => 'psa', 'Psat7g215400' => 'psa', 'Psat7g235600' => 'psa', 'Psat7g235760' => 'psa', 'PSO063G4603' => 'pso', 'PSO210G0182' => 'pso', 'PSO210G0196' => 'pso', 'PSO339G0394' => 'pso', 'PSO339G4127' => 'pso', 'PSO513G0064' => 'pso', 'PSO761G0079' => 'pso', 'QL01p031003' => 'qlo', 'QL01p031078' => 'qlo', 'QL06p003004' => 'qlo', 'QL07p048731' => 'qlo', 'QL09p037427' => 'qlo', 'RcHm_v2.0_Chr3g0466361' => 'rch', 'RcHm_v2.0_Chr3g0485571' => 'rch', 'RcHm_v2.0_Chr4g0416551' => 'rch', 'RcHm_v2.0_Chr5g0065831' => 'rch', 'Rhsim01G0230500' => 'rsi', 'Rhsim05G0194000' => 'rsi', 'Rhsim08G0250400' => 'rsi', 'Sabra02G0131000' => 'sbr', 'Sabra06G0066300' => 'sbr', 'Sabra08G0115500' => 'sbr', 'Sabra09G0023900' => 'sbr', 'Sabra10G0054000' => 'sbr', 'Sabra14G0081500' => 'sbr', 'Sabra16G0147100' => 'sbr', 'SalBow2G2957' => 'sbo', 'SalBow4G3320' => 'sbo', 'SalBow8G1894' => 'sbo', 'Sc07g0007950' => 'sci', 'Sc12g0001360' => 'sci', 'Sc13g0004330' => 'sci', 'Sc20g0005010' => 'sci', 'Sed0000361' => 'sed', 'Sed0001706' => 'sed', 'Sed0002422' => 'sed', 'Sed0004029' => 'sed', 'Sed0004602' => 'sed', 'Sed0004943' => 'sed', 'Sed0008646' => 'sed', 'Sed0023313' => 'sed', 'Sed0024843' => 'sed', 'SEGI_00081' => 'sgi', 'SEGI_00947' => 'sgi', 'SEGI_04046' => 'sgi', 'SEGI_06880' => 'sgi', 'SEGI_09736' => 'sgi', 'SEGI_12741' => 'sgi', 'SEGI_14530' => 'sgi', 'SEGI_20705' => 'sgi', 'SEGI_26088' => 'sgi', 'SEGI_28323' => 'sgi', 'SEGI_33343' => 'sgi', 'SGA_v2.0_scaffold126G33775' => 'sas', 'SGA_v2.0_scaffold2G01337' => 'sas', 'SGA_v2.0_scaffold38G15006' => 'sas', 'SGA_v2.0_scaffold39G15264' => 'sas', 'SGA_v2.0_scaffold453G51880' => 'sas', 'SHI12696' => 'shi', 'SMO367G1096' => 'smo', 'Solyc01g068630.3' => 'sly', 'Solyc05g011880.3' => 'sly', 'Solyc06g076300.3' => 'sly', 'Solyc09g010940.4' => 'sly', 'Solyc09g075890.3' => 'sly', 'Sopen01g030560' => 'spe', 'Sopen05g006630' => 'spe', 'Sopen06g032720' => 'spe', 'Sopen09g005660' => 'spe', 'Sopen09g030690' => 'spe', 'Sp4g14540' => 'spa', 'Sp4g20030' => 'spa', 'Sp5g01320' => 'spa', 'Sp6g21170' => 'spa', 'Sp6g21180' => 'spa', 'Sp6g21190' => 'spa', 'Sp6g40220' => 'spa', 'TAR362G0122' => 'tar', 'TAR362G1338' => 'tar', 'TAR369G0590' => 'tar', 'TAR371G0824' => 'tar', 'TAR622G1429' => 'tar', 'TAR623G0734' => 'tar', 'TAR625G0441' => 'tar', 'TAR629G0976' => 'tar', 'TAR633G1195' => 'tar', 'TAR636G2660' => 'tar', 'THA.LOC104799440' => 'tha', 'THA.LOC104800966' => 'tha', 'THA.LOC104806559' => 'tha', 'THA.LOC104810765' => 'tha', 'THA.LOC104816266' => 'tha', 'THA.LOC104817419' => 'tha', 'THA.LOC104827021' => 'tha', 'Thecc.01G327400' => 'tca', 'Thecc.04G229200' => 'tca', 'Thecc.05G037400' => 'tca', 'Thecc.09G318600' => 'tca', 'Thecc.09G318700' => 'tca', 'Thhalv10006238m.g' => 'esa', 'Thhalv10014321m.g' => 'esa', 'Thhalv10014335m.g' => 'esa', 'Thhalv10015826m.g' => 'esa', 'Thhalv10017107m.g' => 'esa', 'Thhalv10017180m.g' => 'esa', 'Thhalv10029339m.g' => 'esa', 'TPR.G1699' => 'tpr', 'TPR.G23609' => 'tpr', 'TPR.G3081' => 'tpr', 'TPR.G40397' => 'tpr', 'TPR.G5522' => 'tpr', 'TPR.G5618' => 'tpr', 'TPR.G5626' => 'tpr', 'TWI09G1632' => 'twi', 'TWI23G1230' => 'twi', 'TWI53G1064' => 'twi', 'TWI59G0751' => 'twi', 'TWI74G0947' => 'twi', 'TWI77G0337' => 'twi', 'TWI79G1254' => 'twi', 'unitig_0.g2341' => 'ugi', 'unitig_26.g10006' => 'ugi', 'unitig_26.g10008' => 'ugi', 'unitig_26.g9192' => 'ugi', 'vmacro14547' => 'vma', 'vmacro15333' => 'vma', 'vmacro18743' => 'vma', 'vmacro20166' => 'vma', 'VMungo0331G0523' => 'vmu', 'VMungo0331G1202' => 'vmu', 'VMungo0720G1228' => 'vmu', 'VMungo0720G1514' => 'vmu', 'VMungo1080G0169' => 'vmu', 'VMungo1127G1475' => 'vmu', 'VMungo1383G1208' => 'vmu', 'VMungo1383G1698' => 'vmu', 'Zm00001eb012270' => 'zma', 'Zm00001eb054100' => 'zma', 'Zm00001eb063350' => 'zma', 'Zm00001eb328560' => 'zma', 'Zm00001eb342820' => 'zma', 'Zm00001eb362210' => 'zma', 'Zm00001eb397730' => 'zma', 'Zm00001eb399750' => 'zma' ), 'gf_id' => 'HOM05D000959', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000959' ), 'data_identifier' => 'HOM05D000959', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000959', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '622', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p07100' => 'bna', 'A03p11720' => 'bna', 'A05p08300' => 'bna', 'A05p13380' => 'bna', 'A09p54130' => 'bna', 'A10p16690' => 'bna', 'A10p16700' => 'bna', 'A10p33390' => 'bna', 'Aa31LG10G16020' => 'aar', 'Aa31LG1G11810' => 'aar', 'Aa31LG1G11830' => 'aar', 'Aa31LG1G22510' => 'aar', 'Aa31LG5G4890' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5793' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2310' => 'aag', 'Actinidia08499' => 'ach', 'Actinidia11262' => 'ach', 'Actinidia23926' => 'ach', 'Actinidia34420' => 'ach', 'Actinidia36970' => 'ach', 'Ah.02g111220' => 'amhyb', 'Ah.15g097750' => 'amhyb', 'AL4G27500' => 'aly', 'AL6G11470' => 'aly', 'AL8G35950' => 'aly', 'AL8G35960' => 'aly', 'AL8G35970' => 'aly', 'Aqoxy1G00912' => 'aox', 'Aqoxy2G02253' => 'aox', 'Aqoxy2G02411' => 'aox', 'Aqoxy5G00485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BZ66YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K8ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM4FUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6BF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HFV7XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25JBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0YNNV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MAKK6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P70IT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP2Z6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V61LZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YWP64R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3S9AI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7PGHH' => 'arhy', 'AT2G32150' => 'ath', 'AT3G62040' => 'ath', 'AT5G02230' => 'ath', 'AT5G59480' => 'ath', 'AT5G59490' => 'ath', 'ATR0332G060' => 'atr', 'ATR0559G190' => 'atr', 'ATR0693G294' => 'atr', 'Atru.chr3.3975' => 'acertr', 'Atru.chr3.3976' => 'acertr', 'Atru.chr3.3977' => 'acertr', 'Atru.chr4.2498' => 'acertr', 'Atru.chr5.838' => 'acertr', 'Atru.chr8.1990' => 'acertr', 'Atru.chr8.1991' => 'acertr', 'Atru.chr8.1992' => 'acertr', 'AUR62001759' => 'cqu', 'AUR62009545' => 'cqu', 'AUR62010474' => 'cqu', 'AUR62025820' => 'cqu', 'AUR62030422' => 'cqu', 'AUR62033605' => 'cqu', 'AUR62038615' => 'cqu', 'AUR62041347' => 'cqu', 'BcaB01g04574' => 'bca', 'BcaB02g09263' => 'bca', 'BcaB02g10453' => 'bca', 'BcaB05g22513' => 'bca', 'BcaB08g36253' => 'bca', 'BcaB08g36254' => 'bca', 'BcaC01g06519' => 'bca', 'BcaC02g11889' => 'bca', 'BcaC03g14010' => 'bca', 'BcaC03g18439' => 'bca', 'BcaC04g19765' => 'bca', 'BcaC09g48432' => 'bca', 'BcaNung07302' => 'bca', 'BolC2t06040H' => 'bol', 'BolC2t07346H' => 'bol', 'BolC3t13817H' => 'bol', 'BolC4t22625H' => 'bol', 'BolC4t23297H' => 'bol', 'BolC8t51278H' => 'bol', 'BolC9t58050H' => 'bol', 'BolC9t58051H' => 'bol', 'BolC9t60163H' => 'bol', 'BraA02t04712Z' => 'bra', 'BraA02t05791Z' => 'bra', 'BraA03t10483Z' => 'bra', 'BraA05t19795Z' => 'bra', 'BraA05t20276Z' => 'bra', 'BraA09t40827Z' => 'bra', 'BraA10t43750Z' => 'bra', 'BraA10t43751Z' => 'bra', 'BraA10t45370Z' => 'bra', 'C02p00400' => 'bna', 'C02p12460' => 'bna', 'C03p13680' => 'bna', 'C04p10270' => 'bna', 'C04p17500' => 'bna', 'C08p37010' => 'bna', 'C09p51880' => 'bna', 'C09p51890' => 'bna', 'C09p74300' => 'bna', 'CAN.G179.26' => 'can', 'CAN.G3384.1' => 'can', 'CAN.G394.68' => 'can', 'CAN.G907.13' => 'can', 'CANSAT11G0012' => 'cansat', 'CANSAT25G1586' => 'cansat', 'CANSAT35G0735' => 'cansat', 'CANSAT54G0556' => 'cansat', 'CANSAT64G0356' => 'cansat', 'CANSAT78G2042' => 'cansat', 'CARHR125920' => 'chi', 'CARHR131910' => 'chi', 'CARHR172390' => 'chi', 'CARHR211140' => 'chi', 'CARHR285850' => 'chi', 'CARHR285860' => 'chi', 'Carub.0004s1347' => 'cru', 'Carub.0004s1960' => 'cru', 'Carub.0005s2880' => 'cru', 'Carub.0006s0107' => 'cru', 'Carub.0008s2015' => 'cru', 'Carub.0008s2016' => 'cru', 'Carub.0008s2017' => 'cru', 'Ca_01315_v3' => 'car', 'Ca_05063_v3' => 'car', 'Ca_10231_v3' => 'car', 'Ca_10913_v3' => 'car', 'Ca_19156_v3' => 'car', 'Ca_23644_v3' => 'car', 'Ca_26735_v3' => 'car', 'Cc01_g13130' => 'ccan', 'Cc02_g21690' => 'ccan', 'Cc03_g03600' => 'ccan', 'Cc06_g02510' => 'ccan', 'CDE02G1265' => 'cde', 'CDE05G0415' => 'cde', 'CDE08G1082' => 'cde', 'Cfa005780' => 'cfa', 'Cfa011522' => 'cfa', 'Cfa011523' => 'cfa', 'Cfa015627' => 'cfa', 'Cfa017359' => 'cfa', 'Ciclev10005687m.g' => 'ccl', 'Ciclev10012173m.g' => 'ccl', 'Ciclev10021621m.g' => 'ccl', 'Ciclev10028968m.g' => 'ccl', 'Ciclev10029907m.g' => 'ccl', 'CiPaw.01G164800' => 'cil', 'CiPaw.07G083700' => 'cil', 'CiPaw.07G127000' => 'cil', 'CiPaw.07G136900' => 'cil', 'CiPaw.08G081700' => 'cil', 'CiPaw.09G194600' => 'cil', 'CiPaw.10G146500' => 'cil', 'CiPaw.13G091500' => 'cil', 'CiPaw.13G091600' => 'cil', 'ClCG00G003390' => 'cla', 'ClCG01G007220' => 'cla', 'ClCG03G001370' => 'cla', 'ClCG04G008100' => 'cla', 'ClCG06G006110' => 'cla', 'ClCG06G006130' => 'cla', 'ClCG10G021210' => 'cla', 'COL.COLO4_07648' => 'col', 'COL.COLO4_07650' => 'col', 'COL.COLO4_07651' => 'col', 'COL.COLO4_14780' => 'col', 'COL.COLO4_18546' => 'col', 'COL.COLO4_18547' => 'col', 'COL.COLO4_23103' => 'col', 'COL.COLO4_30419' => 'col', 'COL.COLO4_34232' => 'col', 'Cpa.g.sc169.20' => 'cpa', 'Cpa.g.sc57.45' => 'cpa', 'Cpa.g.sc58.124' => 'cpa', 'Cpa.g.sc58.125' => 'cpa', 'Cpa.g.sc81.118' => 'cpa', 'Cpa.g.sc81.119' => 'cpa', 'Cre12.g524700' => 'cre', 'CsaV3_1G034430' => 'csa', 'CsaV3_1G034440' => 'csa', 'CsaV3_1G034450' => 'csa', 'CsaV3_3G034830' => 'csa', 'CsaV3_4G025090' => 'csa', 'CsaV3_5G018660' => 'csa', 'CsaV3_6G038160' => 'csa', 'CSS0003447' => 'camsi', 'CSS0017840' => 'camsi', 'CSS0019260' => 'camsi', 'CSS0040375' => 'camsi', 'CSS0042533' => 'camsi', 'DCAR_005960' => 'dca', 'DCAR_012104' => 'dca', 'DCAR_012105' => 'dca', 'DCAR_012293' => 'dca', 'DCAR_015632' => 'dca', 'DCAR_024602' => 'dca', 'DCAR_028752' => 'dca', 'Dinv06261' => 'din', 'Dinv13982' => 'din', 'Dinv17029' => 'din', 'Dinv18463' => 'din', 'Dinv33181' => 'din', 'Dinv35585' => 'din', 'Dinv37161' => 'din', 'Dinv42977' => 'din', 'Dinv43122' => 'din', 'Dinv44517' => 'din', 'Duzib093G0256' => 'dzi', 'Duzib106G1254' => 'dzi', 'Duzib128G1789' => 'dzi', 'Duzib133G0633' => 'dzi', 'Duzib138G0510' => 'dzi', 'Duzib150G1084' => 'dzi', 'Duzib168G0488' => 'dzi', 'Duzib168G1523' => 'dzi', 'Duzib170G0133' => 'dzi', 'ECA234G1433' => 'eca', 'ECA236G1432' => 'eca', 'ECA236G2256' => 'eca', 'ECA236G2365' => 'eca', 'ECA236G4830' => 'eca', 'ECA248G1505' => 'eca', 'EL10Ac3g06431' => 'bvu', 'EL10Ac5g12577' => 'bvu', 'EL10Ac6g13533' => 'bvu', 'EL10Ac7g16045' => 'bvu', 'Eucgr.A01281' => 'egr', 'Eucgr.B02326' => 'egr', 'Eucgr.H03532' => 'egr', 'Eucgr.K00553' => 'egr', 'Eucgr.K03116' => 'egr', 'FAN02G3963' => 'fan', 'FAN05G0438' => 'fan', 'FAN09G2434' => 'fan', 'FAN12G3984' => 'fan', 'FAN14G0798' => 'fan', 'FAN17G0652' => 'fan', 'FAN19G1988' => 'fan', 'FAN22G0632' => 'fan', 'FAN23G0387' => 'fan', 'FAN26G1323' => 'fan', 'FAN28G0666' => 'fan', 'FvH4_1g26080' => 'fve', 'FvH4_3g36780' => 'fve', 'FvH4_4g15270' => 'fve', 'FvH4_6g13490' => 'fve', 'Glyma.01G098700' => 'gma', 'Glyma.03G065900' => 'gma', 'Glyma.03G073754' => 'gma', 'Glyma.03G073758' => 'gma', 'Glyma.03G083200' => 'gma', 'Glyma.03G225500' => 'gma', 'Glyma.05G037766' => 'gma', 'Glyma.07G133500' => 'gma', 'Glyma.10G139400' => 'gma', 'Glyma.10G248900' => 'gma', 'Glyma.11G137800' => 'gma', 'Glyma.12G061300' => 'gma', 'Glyma.13G337900' => 'gma', 'Glyma.15G036600' => 'gma', 'Glyma.18G182800' => 'gma', 'Glyma.19G222500' => 'gma', 'Glyma.20G144800' => 'gma', 'Gohir.A01G222000' => 'ghi', 'Gohir.A03G044000' => 'ghi', 'Gohir.A03G044100' => 'ghi', 'Gohir.A04G083100' => 'ghi', 'Gohir.A07G127200' => 'ghi', 'Gohir.A07G132400' => 'ghi', 'Gohir.A08G000700' => 'ghi', 'Gohir.A11G327300' => 'ghi', 'Gohir.D01G211500' => 'ghi', 'Gohir.D03G123400' => 'ghi', 'Gohir.D03G123500' => 'ghi', 'Gohir.D04G121800' => 'ghi', 'Gohir.D07G131500' => 'ghi', 'Gohir.D07G136600' => 'ghi', 'Gohir.D08G011600' => 'ghi', 'Gohir.D11G346200' => 'ghi', 'Gorai.001G142800' => 'gra', 'Gorai.001G148700' => 'gra', 'Gorai.002G257300' => 'gra', 'Gorai.003G130000' => 'gra', 'Gorai.003G130100' => 'gra', 'Gorai.004G005300' => 'gra', 'Gorai.007G376500' => 'gra', 'Gorai.012G104700' => 'gra', 'GSVIVG01017946001' => 'vvi', 'GSVIVG01024928001' => 'vvi', 'GSVIVG01028227001' => 'vvi', 'GSVIVG01034151001' => 'vvi', 'HanXRQChr05g0135031' => 'han', 'HanXRQChr05g0135041' => 'han', 'HanXRQChr05g0140021' => 'han', 'HanXRQChr06g0178981' => 'han', 'HanXRQChr07g0188251' => 'han', 'HanXRQChr08g0235311' => 'han', 'HanXRQChr09g0271011' => 'han', 'HanXRQChr10g0293321' => 'han', 'HanXRQChr13g0388171' => 'han', 'Haze_00916' => 'cav', 'Haze_05063' => 'cav', 'Haze_20814' => 'cav', 'Haze_24128' => 'cav', 'Hma1.2p1_0745F.1_g212010' => 'hma', 'Hma1.2p1_0757F.1_g213260' => 'hma', 'Hma1.2p1_0936F.1_g238840' => 'hma', 'Hma1.2p1_1735F.1_g299890' => 'hma', 'Hma1.2p1_1861F.1_g305685' => 'hma', 'HPP92_003397' => 'vpl', 'HPP92_012597' => 'vpl', 'HPP92_015520' => 'vpl', 'HPP92_015539' => 'vpl', 'HPP92_020373' => 'vpl', 'Hund04938' => 'sun', 'Hund10677' => 'sun', 'Hund11033' => 'sun', 'Hund12155' => 'sun', 'Lalb_Chr01g0022551' => 'lal', 'Lalb_Chr03g0042341' => 'lal', 'Lalb_Chr07g0192931' => 'lal', 'Lalb_Chr12g0209551' => 'lal', 'Lalb_Chr19g0125251' => 'lal', 'Lalb_Chr19g0137891' => 'lal', 'Lalb_Chr21g0304641' => 'lal', 'Lalb_Chr21g0309881' => 'lal', 'Lj1A5T12' => 'lonja', 'Lj1C148G10' => 'lonja', 'Lj2A93T83' => 'lonja', 'Lj3A738G68' => 'lonja', 'Lj3C966T1' => 'lonja', 'Lj3g0018958' => 'lja', 'Lj3g0021831' => 'lja', 'Lj3g0025443' => 'lja', 'Lj4g0026809' => 'lja', 'Lj5g0012558' => 'lja', 'Lj5g0021586' => 'lja', 'Lsat_1_v5_gn_5_156840' => 'lsa', 'Lsat_1_v5_gn_8_73460' => 'lsa', 'Lsat_1_v5_gn_8_73481' => 'lsa', 'Lsat_1_v5_gn_9_31601' => 'lsa', 'Lsat_1_v5_gn_9_77320' => 'lsa', 'Manes.01G171300' => 'mes', 'Manes.01G171400' => 'mes', 'Manes.01G236100' => 'mes', 'Manes.02G130500' => 'mes', 'Manes.02G130600' => 'mes', 'Manes.03G180200' => 'mes', 'Manes.05G007000' => 'mes', 'Manes.08G084400' => 'mes', 'Manes.09G092600' => 'mes', 'Manes.15G027900' => 'mes', 'MBI04_g40948_MAGBIO' => 'mbi', 'MBI14_g12123_MAGBIO' => 'mbi', 'MBI18_g28915_MAGBIO' => 'mbi', 'MCO09G053' => 'mco', 'MCO11G782' => 'mco', 'MCO15G215' => 'mco', 'MD03G1088500' => 'mdo', 'MD03G1088600' => 'mdo', 'MD04G1130800' => 'mdo', 'MD09G1291700' => 'mdo', 'MD11G1097500' => 'mdo', 'MD11G1097600' => 'mdo', 'MD12G1143900' => 'mdo', 'MD13G1191400' => 'mdo', 'MD16G1191500' => 'mdo', 'Medtr1g085570' => 'mtr', 'Medtr1g104610' => 'mtr', 'Medtr2g097520' => 'mtr', 'Medtr4g021800' => 'mtr', 'Medtr4g021825' => 'mtr', 'Medtr4g064270' => 'mtr', 'Medtr4g064380' => 'mtr', 'Medtr7g062150' => 'mtr', 'MELO3C003138.2' => 'cme', 'MELO3C005187.2' => 'cme', 'MELO3C009252.2' => 'cme', 'MELO3C014481.2' => 'cme', 'MELO3C020616.2' => 'cme', 'MELO3C020617.2' => 'cme', 'MELO3C020618.2' => 'cme', 'Migut.G00328' => 'egut', 'Migut.J00320' => 'egut', 'Migut.L01000' => 'egut', 'Migut.L01953' => 'egut', 'MSTRG.10253' => 'ama', 'MSTRG.19077' => 'ama', 'MSTRG.26780' => 'ama', 'MSTRG.4023' => 'ama', 'MSTRG.5655' => 'ama', 'MSTRG.9992' => 'ama', 'Nitab4.5_0000043g0310' => 'nta', 'Nitab4.5_0000463g0080' => 'nta', 'Nitab4.5_0000705g0170' => 'nta', 'Nitab4.5_0001326g0060' => 'nta', 'Nitab4.5_0001628g0030' => 'nta', 'Nitab4.5_0002103g0110' => 'nta', 'Nitab4.5_0002946g0030' => 'nta', 'Nitab4.5_0004639g0030' => 'nta', 'Nn2g11149' => 'nnu', 'Nn2g13389' => 'nnu', 'Nn4g25326' => 'nnu', 'Nn4g26290' => 'nnu', 'Nn5g29865' => 'nnu', 'Oeu004163.1' => 'oeu', 'Oeu006901.1' => 'oeu', 'Oeu010096.1' => 'oeu', 'Oeu024340.1' => 'oeu', 'Oeu048369.1' => 'oeu', 'Os01g0973000' => 'osa', 'Os03g0273800' => 'osa', 'Os03g0701200' => 'osa', 'Os03g0834050' => 'osa', 'Os07g0634400' => 'osa', 'Peaxi162Scf00092g01414' => 'pax', 'Peaxi162Scf00165g00818' => 'pax', 'Peaxi162Scf00309g00516' => 'pax', 'Peaxi162Scf00774g00218' => 'pax', 'PGR004G1824' => 'pgr', 'PGR004G2606' => 'pgr', 'PGR031G2716' => 'pgr', 'PGR102G2460' => 'pgr', 'PGR142G2599' => 'pgr', 'PGSC0003DMG400000843' => 'stu', 'PGSC0003DMG400008829' => 'stu', 'PGSC0003DMG400030418' => 'stu', 'PGSC0003DMG400031834' => 'stu', 'PGSC0003DMG401028300' => 'stu', 'PGSC0003DMG402028300' => 'stu', 'Phvul.001G219300' => 'pvu', 'Phvul.007G056000' => 'pvu', 'Phvul.007G208000' => 'pvu', 'Phvul.008G119500' => 'pvu', 'Phvul.010G011200' => 'pvu', 'Phvul.010G014800' => 'pvu', 'Phvul.011G062900' => 'pvu', 'Phvul.L007043' => 'pvu', 'Potri.001G242300' => 'ptr', 'Potri.002G185300' => 'ptr', 'Potri.006G086900' => 'ptr', 'Potri.008G151700' => 'ptr', 'Potri.009G033500' => 'ptr', 'Potri.010G089300' => 'ptr', 'Potri.014G110800' => 'ptr', 'Pp3c27_8130' => 'ppa', 'Pp3c6_27410' => 'ppa', 'PRCOL_00001659' => 'pco', 'PRCOL_00001927' => 'pco', 'PRCOL_00003649' => 'pco', 'Prupe.1G011600' => 'ppe', 'Prupe.3G000800' => 'ppe', 'Prupe.3G001100' => 'ppe', 'Prupe.6G072700' => 'ppe', 'Prupe.6G072800' => 'ppe', 'Prupe.6G257300' => 'ppe', 'Prupe.8G033000' => 'ppe', 'Psat0s2633g0080' => 'psa', 'Psat0s3396g0080' => 'psa', 'Psat0s3396g0200' => 'psa', 'Psat3g139080' => 'psa', 'Psat5g285080' => 'psa', 'Psat6g157760' => 'psa', 'Psat6g208440' => 'psa', 'Psat7g215320' => 'psa', 'Psat7g215400' => 'psa', 'Psat7g235600' => 'psa', 'Psat7g235760' => 'psa', 'PSO063G4603' => 'pso', 'PSO210G0182' => 'pso', 'PSO210G0196' => 'pso', 'PSO339G0394' => 'pso', 'PSO339G4127' => 'pso', 'PSO513G0064' => 'pso', 'PSO761G0079' => 'pso', 'QL01p031003' => 'qlo', 'QL01p031078' => 'qlo', 'QL06p003004' => 'qlo', 'QL07p048731' => 'qlo', 'QL09p037427' => 'qlo', 'RcHm_v2.0_Chr3g0466361' => 'rch', 'RcHm_v2.0_Chr3g0485571' => 'rch', 'RcHm_v2.0_Chr4g0416551' => 'rch', 'RcHm_v2.0_Chr5g0065831' => 'rch', 'Rhsim01G0230500' => 'rsi', 'Rhsim05G0194000' => 'rsi', 'Rhsim08G0250400' => 'rsi', 'Sabra02G0131000' => 'sbr', 'Sabra06G0066300' => 'sbr', 'Sabra08G0115500' => 'sbr', 'Sabra09G0023900' => 'sbr', 'Sabra10G0054000' => 'sbr', 'Sabra14G0081500' => 'sbr', 'Sabra16G0147100' => 'sbr', 'SalBow2G2957' => 'sbo', 'SalBow4G3320' => 'sbo', 'SalBow8G1894' => 'sbo', 'Sc07g0007950' => 'sci', 'Sc12g0001360' => 'sci', 'Sc13g0004330' => 'sci', 'Sc20g0005010' => 'sci', 'Sed0000361' => 'sed', 'Sed0001706' => 'sed', 'Sed0002422' => 'sed', 'Sed0004029' => 'sed', 'Sed0004602' => 'sed', 'Sed0004943' => 'sed', 'Sed0008646' => 'sed', 'Sed0023313' => 'sed', 'Sed0024843' => 'sed', 'SEGI_00081' => 'sgi', 'SEGI_00947' => 'sgi', 'SEGI_04046' => 'sgi', 'SEGI_06880' => 'sgi', 'SEGI_09736' => 'sgi', 'SEGI_12741' => 'sgi', 'SEGI_14530' => 'sgi', 'SEGI_20705' => 'sgi', 'SEGI_26088' => 'sgi', 'SEGI_28323' => 'sgi', 'SEGI_33343' => 'sgi', 'SGA_v2.0_scaffold126G33775' => 'sas', 'SGA_v2.0_scaffold2G01337' => 'sas', 'SGA_v2.0_scaffold38G15006' => 'sas', 'SGA_v2.0_scaffold39G15264' => 'sas', 'SGA_v2.0_scaffold453G51880' => 'sas', 'SHI12696' => 'shi', 'SMO367G1096' => 'smo', 'Solyc01g068630.3' => 'sly', 'Solyc05g011880.3' => 'sly', 'Solyc06g076300.3' => 'sly', 'Solyc09g010940.4' => 'sly', 'Solyc09g075890.3' => 'sly', 'Sopen01g030560' => 'spe', 'Sopen05g006630' => 'spe', 'Sopen06g032720' => 'spe', 'Sopen09g005660' => 'spe', 'Sopen09g030690' => 'spe', 'Sp4g14540' => 'spa', 'Sp4g20030' => 'spa', 'Sp5g01320' => 'spa', 'Sp6g21170' => 'spa', 'Sp6g21180' => 'spa', 'Sp6g21190' => 'spa', 'Sp6g40220' => 'spa', 'TAR362G0122' => 'tar', 'TAR362G1338' => 'tar', 'TAR369G0590' => 'tar', 'TAR371G0824' => 'tar', 'TAR622G1429' => 'tar', 'TAR623G0734' => 'tar', 'TAR625G0441' => 'tar', 'TAR629G0976' => 'tar', 'TAR633G1195' => 'tar', 'TAR636G2660' => 'tar', 'THA.LOC104799440' => 'tha', 'THA.LOC104800966' => 'tha', 'THA.LOC104806559' => 'tha', 'THA.LOC104810765' => 'tha', 'THA.LOC104816266' => 'tha', 'THA.LOC104817419' => 'tha', 'THA.LOC104827021' => 'tha', 'Thecc.01G327400' => 'tca', 'Thecc.04G229200' => 'tca', 'Thecc.05G037400' => 'tca', 'Thecc.09G318600' => 'tca', 'Thecc.09G318700' => 'tca', 'Thhalv10006238m.g' => 'esa', 'Thhalv10014321m.g' => 'esa', 'Thhalv10014335m.g' => 'esa', 'Thhalv10015826m.g' => 'esa', 'Thhalv10017107m.g' => 'esa', 'Thhalv10017180m.g' => 'esa', 'Thhalv10029339m.g' => 'esa', 'TPR.G1699' => 'tpr', 'TPR.G23609' => 'tpr', 'TPR.G3081' => 'tpr', 'TPR.G40397' => 'tpr', 'TPR.G5522' => 'tpr', 'TPR.G5618' => 'tpr', 'TPR.G5626' => 'tpr', 'TWI09G1632' => 'twi', 'TWI23G1230' => 'twi', 'TWI53G1064' => 'twi', 'TWI59G0751' => 'twi', 'TWI74G0947' => 'twi', 'TWI77G0337' => 'twi', 'TWI79G1254' => 'twi', 'unitig_0.g2341' => 'ugi', 'unitig_26.g10006' => 'ugi', 'unitig_26.g10008' => 'ugi', 'unitig_26.g9192' => 'ugi', 'vmacro14547' => 'vma', 'vmacro15333' => 'vma', 'vmacro18743' => 'vma', 'vmacro20166' => 'vma', 'VMungo0331G0523' => 'vmu', 'VMungo0331G1202' => 'vmu', 'VMungo0720G1228' => 'vmu', 'VMungo0720G1514' => 'vmu', 'VMungo1080G0169' => 'vmu', 'VMungo1127G1475' => 'vmu', 'VMungo1383G1208' => 'vmu', 'VMungo1383G1698' => 'vmu', 'Zm00001eb012270' => 'zma', 'Zm00001eb054100' => 'zma', 'Zm00001eb063350' => 'zma', 'Zm00001eb328560' => 'zma', 'Zm00001eb342820' => 'zma', 'Zm00001eb362210' => 'zma', 'Zm00001eb397730' => 'zma', 'Zm00001eb399750' => 'zma' ) $gf_id = 'HOM05D000959' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000959' ) $data_identifier = 'HOM05D000959' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 5, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 5, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 10, 'mbi' => (int) 3, 'mco' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 2, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 3, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 11, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399750' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000959', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '622', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p07100' => 'bna', 'A03p11720' => 'bna', 'A05p08300' => 'bna', 'A05p13380' => 'bna', 'A09p54130' => 'bna', 'A10p16690' => 'bna', 'A10p16700' => 'bna', 'A10p33390' => 'bna', 'Aa31LG10G16020' => 'aar', 'Aa31LG1G11810' => 'aar', 'Aa31LG1G11830' => 'aar', 'Aa31LG1G22510' => 'aar', 'Aa31LG5G4890' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5793' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2310' => 'aag', 'Actinidia08499' => 'ach', 'Actinidia11262' => 'ach', 'Actinidia23926' => 'ach', 'Actinidia34420' => 'ach', 'Actinidia36970' => 'ach', 'Ah.02g111220' => 'amhyb', 'Ah.15g097750' => 'amhyb', 'AL4G27500' => 'aly', 'AL6G11470' => 'aly', 'AL8G35950' => 'aly', 'AL8G35960' => 'aly', 'AL8G35970' => 'aly', 'Aqoxy1G00912' => 'aox', 'Aqoxy2G02253' => 'aox', 'Aqoxy2G02411' => 'aox', 'Aqoxy5G00485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BZ66YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K8ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM4FUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6BF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HFV7XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25JBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0YNNV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MAKK6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P70IT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP2Z6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V61LZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YWP64R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3S9AI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7PGHH' => 'arhy', 'AT2G32150' => 'ath', 'AT3G62040' => 'ath', 'AT5G02230' => 'ath', 'AT5G59480' => 'ath', 'AT5G59490' => 'ath', 'ATR0332G060' => 'atr', 'ATR0559G190' => 'atr', 'ATR0693G294' => 'atr', 'Atru.chr3.3975' => 'acertr', 'Atru.chr3.3976' => 'acertr', 'Atru.chr3.3977' => 'acertr', 'Atru.chr4.2498' => 'acertr', 'Atru.chr5.838' => 'acertr', 'Atru.chr8.1990' => 'acertr', 'Atru.chr8.1991' => 'acertr', 'Atru.chr8.1992' => 'acertr', 'AUR62001759' => 'cqu', 'AUR62009545' => 'cqu', 'AUR62010474' => 'cqu', 'AUR62025820' => 'cqu', 'AUR62030422' => 'cqu', 'AUR62033605' => 'cqu', 'AUR62038615' => 'cqu', 'AUR62041347' => 'cqu', 'BcaB01g04574' => 'bca', 'BcaB02g09263' => 'bca', 'BcaB02g10453' => 'bca', 'BcaB05g22513' => 'bca', 'BcaB08g36253' => 'bca', 'BcaB08g36254' => 'bca', 'BcaC01g06519' => 'bca', 'BcaC02g11889' => 'bca', 'BcaC03g14010' => 'bca', 'BcaC03g18439' => 'bca', 'BcaC04g19765' => 'bca', 'BcaC09g48432' => 'bca', 'BcaNung07302' => 'bca', 'BolC2t06040H' => 'bol', 'BolC2t07346H' => 'bol', 'BolC3t13817H' => 'bol', 'BolC4t22625H' => 'bol', 'BolC4t23297H' => 'bol', 'BolC8t51278H' => 'bol', 'BolC9t58050H' => 'bol', 'BolC9t58051H' => 'bol', 'BolC9t60163H' => 'bol', 'BraA02t04712Z' => 'bra', 'BraA02t05791Z' => 'bra', 'BraA03t10483Z' => 'bra', 'BraA05t19795Z' => 'bra', 'BraA05t20276Z' => 'bra', 'BraA09t40827Z' => 'bra', 'BraA10t43750Z' => 'bra', 'BraA10t43751Z' => 'bra', 'BraA10t45370Z' => 'bra', 'C02p00400' => 'bna', 'C02p12460' => 'bna', 'C03p13680' => 'bna', 'C04p10270' => 'bna', 'C04p17500' => 'bna', 'C08p37010' => 'bna', 'C09p51880' => 'bna', 'C09p51890' => 'bna', 'C09p74300' => 'bna', 'CAN.G179.26' => 'can', 'CAN.G3384.1' => 'can', 'CAN.G394.68' => 'can', 'CAN.G907.13' => 'can', 'CANSAT11G0012' => 'cansat', 'CANSAT25G1586' => 'cansat', 'CANSAT35G0735' => 'cansat', 'CANSAT54G0556' => 'cansat', 'CANSAT64G0356' => 'cansat', 'CANSAT78G2042' => 'cansat', 'CARHR125920' => 'chi', 'CARHR131910' => 'chi', 'CARHR172390' => 'chi', 'CARHR211140' => 'chi', 'CARHR285850' => 'chi', 'CARHR285860' => 'chi', 'Carub.0004s1347' => 'cru', 'Carub.0004s1960' => 'cru', 'Carub.0005s2880' => 'cru', 'Carub.0006s0107' => 'cru', 'Carub.0008s2015' => 'cru', 'Carub.0008s2016' => 'cru', 'Carub.0008s2017' => 'cru', 'Ca_01315_v3' => 'car', 'Ca_05063_v3' => 'car', 'Ca_10231_v3' => 'car', 'Ca_10913_v3' => 'car', 'Ca_19156_v3' => 'car', 'Ca_23644_v3' => 'car', 'Ca_26735_v3' => 'car', 'Cc01_g13130' => 'ccan', 'Cc02_g21690' => 'ccan', 'Cc03_g03600' => 'ccan', 'Cc06_g02510' => 'ccan', 'CDE02G1265' => 'cde', 'CDE05G0415' => 'cde', 'CDE08G1082' => 'cde', 'Cfa005780' => 'cfa', 'Cfa011522' => 'cfa', 'Cfa011523' => 'cfa', 'Cfa015627' => 'cfa', 'Cfa017359' => 'cfa', 'Ciclev10005687m.g' => 'ccl', 'Ciclev10012173m.g' => 'ccl', 'Ciclev10021621m.g' => 'ccl', 'Ciclev10028968m.g' => 'ccl', 'Ciclev10029907m.g' => 'ccl', 'CiPaw.01G164800' => 'cil', 'CiPaw.07G083700' => 'cil', 'CiPaw.07G127000' => 'cil', 'CiPaw.07G136900' => 'cil', 'CiPaw.08G081700' => 'cil', 'CiPaw.09G194600' => 'cil', 'CiPaw.10G146500' => 'cil', 'CiPaw.13G091500' => 'cil', 'CiPaw.13G091600' => 'cil', 'ClCG00G003390' => 'cla', 'ClCG01G007220' => 'cla', 'ClCG03G001370' => 'cla', 'ClCG04G008100' => 'cla', 'ClCG06G006110' => 'cla', 'ClCG06G006130' => 'cla', 'ClCG10G021210' => 'cla', 'COL.COLO4_07648' => 'col', 'COL.COLO4_07650' => 'col', 'COL.COLO4_07651' => 'col', 'COL.COLO4_14780' => 'col', 'COL.COLO4_18546' => 'col', 'COL.COLO4_18547' => 'col', 'COL.COLO4_23103' => 'col', 'COL.COLO4_30419' => 'col', 'COL.COLO4_34232' => 'col', 'Cpa.g.sc169.20' => 'cpa', 'Cpa.g.sc57.45' => 'cpa', 'Cpa.g.sc58.124' => 'cpa', 'Cpa.g.sc58.125' => 'cpa', 'Cpa.g.sc81.118' => 'cpa', 'Cpa.g.sc81.119' => 'cpa', 'Cre12.g524700' => 'cre', 'CsaV3_1G034430' => 'csa', 'CsaV3_1G034440' => 'csa', 'CsaV3_1G034450' => 'csa', 'CsaV3_3G034830' => 'csa', 'CsaV3_4G025090' => 'csa', 'CsaV3_5G018660' => 'csa', 'CsaV3_6G038160' => 'csa', 'CSS0003447' => 'camsi', 'CSS0017840' => 'camsi', 'CSS0019260' => 'camsi', 'CSS0040375' => 'camsi', 'CSS0042533' => 'camsi', 'DCAR_005960' => 'dca', 'DCAR_012104' => 'dca', 'DCAR_012105' => 'dca', 'DCAR_012293' => 'dca', 'DCAR_015632' => 'dca', 'DCAR_024602' => 'dca', 'DCAR_028752' => 'dca', 'Dinv06261' => 'din', 'Dinv13982' => 'din', 'Dinv17029' => 'din', 'Dinv18463' => 'din', 'Dinv33181' => 'din', 'Dinv35585' => 'din', 'Dinv37161' => 'din', 'Dinv42977' => 'din', 'Dinv43122' => 'din', 'Dinv44517' => 'din', 'Duzib093G0256' => 'dzi', 'Duzib106G1254' => 'dzi', 'Duzib128G1789' => 'dzi', 'Duzib133G0633' => 'dzi', 'Duzib138G0510' => 'dzi', 'Duzib150G1084' => 'dzi', 'Duzib168G0488' => 'dzi', 'Duzib168G1523' => 'dzi', 'Duzib170G0133' => 'dzi', 'ECA234G1433' => 'eca', 'ECA236G1432' => 'eca', 'ECA236G2256' => 'eca', 'ECA236G2365' => 'eca', 'ECA236G4830' => 'eca', 'ECA248G1505' => 'eca', 'EL10Ac3g06431' => 'bvu', 'EL10Ac5g12577' => 'bvu', 'EL10Ac6g13533' => 'bvu', 'EL10Ac7g16045' => 'bvu', 'Eucgr.A01281' => 'egr', 'Eucgr.B02326' => 'egr', 'Eucgr.H03532' => 'egr', 'Eucgr.K00553' => 'egr', 'Eucgr.K03116' => 'egr', 'FAN02G3963' => 'fan', 'FAN05G0438' => 'fan', 'FAN09G2434' => 'fan', 'FAN12G3984' => 'fan', 'FAN14G0798' => 'fan', 'FAN17G0652' => 'fan', 'FAN19G1988' => 'fan', 'FAN22G0632' => 'fan', 'FAN23G0387' => 'fan', 'FAN26G1323' => 'fan', 'FAN28G0666' => 'fan', 'FvH4_1g26080' => 'fve', 'FvH4_3g36780' => 'fve', 'FvH4_4g15270' => 'fve', 'FvH4_6g13490' => 'fve', 'Glyma.01G098700' => 'gma', 'Glyma.03G065900' => 'gma', 'Glyma.03G073754' => 'gma', 'Glyma.03G073758' => 'gma', 'Glyma.03G083200' => 'gma', 'Glyma.03G225500' => 'gma', 'Glyma.05G037766' => 'gma', 'Glyma.07G133500' => 'gma', 'Glyma.10G139400' => 'gma', 'Glyma.10G248900' => 'gma', 'Glyma.11G137800' => 'gma', 'Glyma.12G061300' => 'gma', 'Glyma.13G337900' => 'gma', 'Glyma.15G036600' => 'gma', 'Glyma.18G182800' => 'gma', 'Glyma.19G222500' => 'gma', 'Glyma.20G144800' => 'gma', 'Gohir.A01G222000' => 'ghi', 'Gohir.A03G044000' => 'ghi', 'Gohir.A03G044100' => 'ghi', 'Gohir.A04G083100' => 'ghi', 'Gohir.A07G127200' => 'ghi', 'Gohir.A07G132400' => 'ghi', 'Gohir.A08G000700' => 'ghi', 'Gohir.A11G327300' => 'ghi', 'Gohir.D01G211500' => 'ghi', 'Gohir.D03G123400' => 'ghi', 'Gohir.D03G123500' => 'ghi', 'Gohir.D04G121800' => 'ghi', 'Gohir.D07G131500' => 'ghi', 'Gohir.D07G136600' => 'ghi', 'Gohir.D08G011600' => 'ghi', 'Gohir.D11G346200' => 'ghi', 'Gorai.001G142800' => 'gra', 'Gorai.001G148700' => 'gra', 'Gorai.002G257300' => 'gra', 'Gorai.003G130000' => 'gra', 'Gorai.003G130100' => 'gra', 'Gorai.004G005300' => 'gra', 'Gorai.007G376500' => 'gra', 'Gorai.012G104700' => 'gra', 'GSVIVG01017946001' => 'vvi', 'GSVIVG01024928001' => 'vvi', 'GSVIVG01028227001' => 'vvi', 'GSVIVG01034151001' => 'vvi', 'HanXRQChr05g0135031' => 'han', 'HanXRQChr05g0135041' => 'han', 'HanXRQChr05g0140021' => 'han', 'HanXRQChr06g0178981' => 'han', 'HanXRQChr07g0188251' => 'han', 'HanXRQChr08g0235311' => 'han', 'HanXRQChr09g0271011' => 'han', 'HanXRQChr10g0293321' => 'han', 'HanXRQChr13g0388171' => 'han', 'Haze_00916' => 'cav', 'Haze_05063' => 'cav', 'Haze_20814' => 'cav', 'Haze_24128' => 'cav', 'Hma1.2p1_0745F.1_g212010' => 'hma', 'Hma1.2p1_0757F.1_g213260' => 'hma', 'Hma1.2p1_0936F.1_g238840' => 'hma', 'Hma1.2p1_1735F.1_g299890' => 'hma', 'Hma1.2p1_1861F.1_g305685' => 'hma', 'HPP92_003397' => 'vpl', 'HPP92_012597' => 'vpl', 'HPP92_015520' => 'vpl', 'HPP92_015539' => 'vpl', 'HPP92_020373' => 'vpl', 'Hund04938' => 'sun', 'Hund10677' => 'sun', 'Hund11033' => 'sun', 'Hund12155' => 'sun', 'Lalb_Chr01g0022551' => 'lal', 'Lalb_Chr03g0042341' => 'lal', 'Lalb_Chr07g0192931' => 'lal', 'Lalb_Chr12g0209551' => 'lal', 'Lalb_Chr19g0125251' => 'lal', 'Lalb_Chr19g0137891' => 'lal', 'Lalb_Chr21g0304641' => 'lal', 'Lalb_Chr21g0309881' => 'lal', 'Lj1A5T12' => 'lonja', 'Lj1C148G10' => 'lonja', 'Lj2A93T83' => 'lonja', 'Lj3A738G68' => 'lonja', 'Lj3C966T1' => 'lonja', 'Lj3g0018958' => 'lja', 'Lj3g0021831' => 'lja', 'Lj3g0025443' => 'lja', 'Lj4g0026809' => 'lja', 'Lj5g0012558' => 'lja', 'Lj5g0021586' => 'lja', 'Lsat_1_v5_gn_5_156840' => 'lsa', 'Lsat_1_v5_gn_8_73460' => 'lsa', 'Lsat_1_v5_gn_8_73481' => 'lsa', 'Lsat_1_v5_gn_9_31601' => 'lsa', 'Lsat_1_v5_gn_9_77320' => 'lsa', 'Manes.01G171300' => 'mes', 'Manes.01G171400' => 'mes', 'Manes.01G236100' => 'mes', 'Manes.02G130500' => 'mes', 'Manes.02G130600' => 'mes', 'Manes.03G180200' => 'mes', 'Manes.05G007000' => 'mes', 'Manes.08G084400' => 'mes', 'Manes.09G092600' => 'mes', 'Manes.15G027900' => 'mes', 'MBI04_g40948_MAGBIO' => 'mbi', 'MBI14_g12123_MAGBIO' => 'mbi', 'MBI18_g28915_MAGBIO' => 'mbi', 'MCO09G053' => 'mco', 'MCO11G782' => 'mco', 'MCO15G215' => 'mco', 'MD03G1088500' => 'mdo', 'MD03G1088600' => 'mdo', 'MD04G1130800' => 'mdo', 'MD09G1291700' => 'mdo', 'MD11G1097500' => 'mdo', 'MD11G1097600' => 'mdo', 'MD12G1143900' => 'mdo', 'MD13G1191400' => 'mdo', 'MD16G1191500' => 'mdo', 'Medtr1g085570' => 'mtr', 'Medtr1g104610' => 'mtr', 'Medtr2g097520' => 'mtr', 'Medtr4g021800' => 'mtr', 'Medtr4g021825' => 'mtr', 'Medtr4g064270' => 'mtr', 'Medtr4g064380' => 'mtr', 'Medtr7g062150' => 'mtr', 'MELO3C003138.2' => 'cme', 'MELO3C005187.2' => 'cme', 'MELO3C009252.2' => 'cme', 'MELO3C014481.2' => 'cme', 'MELO3C020616.2' => 'cme', 'MELO3C020617.2' => 'cme', 'MELO3C020618.2' => 'cme', 'Migut.G00328' => 'egut', 'Migut.J00320' => 'egut', 'Migut.L01000' => 'egut', 'Migut.L01953' => 'egut', 'MSTRG.10253' => 'ama', 'MSTRG.19077' => 'ama', 'MSTRG.26780' => 'ama', 'MSTRG.4023' => 'ama', 'MSTRG.5655' => 'ama', 'MSTRG.9992' => 'ama', 'Nitab4.5_0000043g0310' => 'nta', 'Nitab4.5_0000463g0080' => 'nta', 'Nitab4.5_0000705g0170' => 'nta', 'Nitab4.5_0001326g0060' => 'nta', 'Nitab4.5_0001628g0030' => 'nta', 'Nitab4.5_0002103g0110' => 'nta', 'Nitab4.5_0002946g0030' => 'nta', 'Nitab4.5_0004639g0030' => 'nta', 'Nn2g11149' => 'nnu', 'Nn2g13389' => 'nnu', 'Nn4g25326' => 'nnu', 'Nn4g26290' => 'nnu', 'Nn5g29865' => 'nnu', 'Oeu004163.1' => 'oeu', 'Oeu006901.1' => 'oeu', 'Oeu010096.1' => 'oeu', 'Oeu024340.1' => 'oeu', 'Oeu048369.1' => 'oeu', 'Os01g0973000' => 'osa', 'Os03g0273800' => 'osa', 'Os03g0701200' => 'osa', 'Os03g0834050' => 'osa', 'Os07g0634400' => 'osa', 'Peaxi162Scf00092g01414' => 'pax', 'Peaxi162Scf00165g00818' => 'pax', 'Peaxi162Scf00309g00516' => 'pax', 'Peaxi162Scf00774g00218' => 'pax', 'PGR004G1824' => 'pgr', 'PGR004G2606' => 'pgr', 'PGR031G2716' => 'pgr', 'PGR102G2460' => 'pgr', 'PGR142G2599' => 'pgr', 'PGSC0003DMG400000843' => 'stu', 'PGSC0003DMG400008829' => 'stu', 'PGSC0003DMG400030418' => 'stu', 'PGSC0003DMG400031834' => 'stu', 'PGSC0003DMG401028300' => 'stu', 'PGSC0003DMG402028300' => 'stu', 'Phvul.001G219300' => 'pvu', 'Phvul.007G056000' => 'pvu', 'Phvul.007G208000' => 'pvu', 'Phvul.008G119500' => 'pvu', 'Phvul.010G011200' => 'pvu', 'Phvul.010G014800' => 'pvu', 'Phvul.011G062900' => 'pvu', 'Phvul.L007043' => 'pvu', 'Potri.001G242300' => 'ptr', 'Potri.002G185300' => 'ptr', 'Potri.006G086900' => 'ptr', 'Potri.008G151700' => 'ptr', 'Potri.009G033500' => 'ptr', 'Potri.010G089300' => 'ptr', 'Potri.014G110800' => 'ptr', 'Pp3c27_8130' => 'ppa', 'Pp3c6_27410' => 'ppa', 'PRCOL_00001659' => 'pco', 'PRCOL_00001927' => 'pco', 'PRCOL_00003649' => 'pco', 'Prupe.1G011600' => 'ppe', 'Prupe.3G000800' => 'ppe', 'Prupe.3G001100' => 'ppe', 'Prupe.6G072700' => 'ppe', 'Prupe.6G072800' => 'ppe', 'Prupe.6G257300' => 'ppe', 'Prupe.8G033000' => 'ppe', 'Psat0s2633g0080' => 'psa', 'Psat0s3396g0080' => 'psa', 'Psat0s3396g0200' => 'psa', 'Psat3g139080' => 'psa', 'Psat5g285080' => 'psa', 'Psat6g157760' => 'psa', 'Psat6g208440' => 'psa', 'Psat7g215320' => 'psa', 'Psat7g215400' => 'psa', 'Psat7g235600' => 'psa', 'Psat7g235760' => 'psa', 'PSO063G4603' => 'pso', 'PSO210G0182' => 'pso', 'PSO210G0196' => 'pso', 'PSO339G0394' => 'pso', 'PSO339G4127' => 'pso', 'PSO513G0064' => 'pso', 'PSO761G0079' => 'pso', 'QL01p031003' => 'qlo', 'QL01p031078' => 'qlo', 'QL06p003004' => 'qlo', 'QL07p048731' => 'qlo', 'QL09p037427' => 'qlo', 'RcHm_v2.0_Chr3g0466361' => 'rch', 'RcHm_v2.0_Chr3g0485571' => 'rch', 'RcHm_v2.0_Chr4g0416551' => 'rch', 'RcHm_v2.0_Chr5g0065831' => 'rch', 'Rhsim01G0230500' => 'rsi', 'Rhsim05G0194000' => 'rsi', 'Rhsim08G0250400' => 'rsi', 'Sabra02G0131000' => 'sbr', 'Sabra06G0066300' => 'sbr', 'Sabra08G0115500' => 'sbr', 'Sabra09G0023900' => 'sbr', 'Sabra10G0054000' => 'sbr', 'Sabra14G0081500' => 'sbr', 'Sabra16G0147100' => 'sbr', 'SalBow2G2957' => 'sbo', 'SalBow4G3320' => 'sbo', 'SalBow8G1894' => 'sbo', 'Sc07g0007950' => 'sci', 'Sc12g0001360' => 'sci', 'Sc13g0004330' => 'sci', 'Sc20g0005010' => 'sci', 'Sed0000361' => 'sed', 'Sed0001706' => 'sed', 'Sed0002422' => 'sed', 'Sed0004029' => 'sed', 'Sed0004602' => 'sed', 'Sed0004943' => 'sed', 'Sed0008646' => 'sed', 'Sed0023313' => 'sed', 'Sed0024843' => 'sed', 'SEGI_00081' => 'sgi', 'SEGI_00947' => 'sgi', 'SEGI_04046' => 'sgi', 'SEGI_06880' => 'sgi', 'SEGI_09736' => 'sgi', 'SEGI_12741' => 'sgi', 'SEGI_14530' => 'sgi', 'SEGI_20705' => 'sgi', 'SEGI_26088' => 'sgi', 'SEGI_28323' => 'sgi', 'SEGI_33343' => 'sgi', 'SGA_v2.0_scaffold126G33775' => 'sas', 'SGA_v2.0_scaffold2G01337' => 'sas', 'SGA_v2.0_scaffold38G15006' => 'sas', 'SGA_v2.0_scaffold39G15264' => 'sas', 'SGA_v2.0_scaffold453G51880' => 'sas', 'SHI12696' => 'shi', 'SMO367G1096' => 'smo', 'Solyc01g068630.3' => 'sly', 'Solyc05g011880.3' => 'sly', 'Solyc06g076300.3' => 'sly', 'Solyc09g010940.4' => 'sly', 'Solyc09g075890.3' => 'sly', 'Sopen01g030560' => 'spe', 'Sopen05g006630' => 'spe', 'Sopen06g032720' => 'spe', 'Sopen09g005660' => 'spe', 'Sopen09g030690' => 'spe', 'Sp4g14540' => 'spa', 'Sp4g20030' => 'spa', 'Sp5g01320' => 'spa', 'Sp6g21170' => 'spa', 'Sp6g21180' => 'spa', 'Sp6g21190' => 'spa', 'Sp6g40220' => 'spa', 'TAR362G0122' => 'tar', 'TAR362G1338' => 'tar', 'TAR369G0590' => 'tar', 'TAR371G0824' => 'tar', 'TAR622G1429' => 'tar', 'TAR623G0734' => 'tar', 'TAR625G0441' => 'tar', 'TAR629G0976' => 'tar', 'TAR633G1195' => 'tar', 'TAR636G2660' => 'tar', 'THA.LOC104799440' => 'tha', 'THA.LOC104800966' => 'tha', 'THA.LOC104806559' => 'tha', 'THA.LOC104810765' => 'tha', 'THA.LOC104816266' => 'tha', 'THA.LOC104817419' => 'tha', 'THA.LOC104827021' => 'tha', 'Thecc.01G327400' => 'tca', 'Thecc.04G229200' => 'tca', 'Thecc.05G037400' => 'tca', 'Thecc.09G318600' => 'tca', 'Thecc.09G318700' => 'tca', 'Thhalv10006238m.g' => 'esa', 'Thhalv10014321m.g' => 'esa', 'Thhalv10014335m.g' => 'esa', 'Thhalv10015826m.g' => 'esa', 'Thhalv10017107m.g' => 'esa', 'Thhalv10017180m.g' => 'esa', 'Thhalv10029339m.g' => 'esa', 'TPR.G1699' => 'tpr', 'TPR.G23609' => 'tpr', 'TPR.G3081' => 'tpr', 'TPR.G40397' => 'tpr', 'TPR.G5522' => 'tpr', 'TPR.G5618' => 'tpr', 'TPR.G5626' => 'tpr', 'TWI09G1632' => 'twi', 'TWI23G1230' => 'twi', 'TWI53G1064' => 'twi', 'TWI59G0751' => 'twi', 'TWI74G0947' => 'twi', 'TWI77G0337' => 'twi', 'TWI79G1254' => 'twi', 'unitig_0.g2341' => 'ugi', 'unitig_26.g10006' => 'ugi', 'unitig_26.g10008' => 'ugi', 'unitig_26.g9192' => 'ugi', 'vmacro14547' => 'vma', 'vmacro15333' => 'vma', 'vmacro18743' => 'vma', 'vmacro20166' => 'vma', 'VMungo0331G0523' => 'vmu', 'VMungo0331G1202' => 'vmu', 'VMungo0720G1228' => 'vmu', 'VMungo0720G1514' => 'vmu', 'VMungo1080G0169' => 'vmu', 'VMungo1127G1475' => 'vmu', 'VMungo1383G1208' => 'vmu', 'VMungo1383G1698' => 'vmu', 'Zm00001eb012270' => 'zma', 'Zm00001eb054100' => 'zma', 'Zm00001eb063350' => 'zma', 'Zm00001eb328560' => 'zma', 'Zm00001eb342820' => 'zma', 'Zm00001eb362210' => 'zma', 'Zm00001eb397730' => 'zma', 'Zm00001eb399750' => 'zma' ), 'gf_id' => 'HOM05D000959', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000959' ), 'data_identifier' => 'HOM05D000959', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000959', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '622', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p07100' => 'bna', 'A03p11720' => 'bna', 'A05p08300' => 'bna', 'A05p13380' => 'bna', 'A09p54130' => 'bna', 'A10p16690' => 'bna', 'A10p16700' => 'bna', 'A10p33390' => 'bna', 'Aa31LG10G16020' => 'aar', 'Aa31LG1G11810' => 'aar', 'Aa31LG1G11830' => 'aar', 'Aa31LG1G22510' => 'aar', 'Aa31LG5G4890' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5793' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2310' => 'aag', 'Actinidia08499' => 'ach', 'Actinidia11262' => 'ach', 'Actinidia23926' => 'ach', 'Actinidia34420' => 'ach', 'Actinidia36970' => 'ach', 'Ah.02g111220' => 'amhyb', 'Ah.15g097750' => 'amhyb', 'AL4G27500' => 'aly', 'AL6G11470' => 'aly', 'AL8G35950' => 'aly', 'AL8G35960' => 'aly', 'AL8G35970' => 'aly', 'Aqoxy1G00912' => 'aox', 'Aqoxy2G02253' => 'aox', 'Aqoxy2G02411' => 'aox', 'Aqoxy5G00485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BZ66YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K8ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM4FUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6BF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HFV7XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25JBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0YNNV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MAKK6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P70IT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP2Z6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V61LZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YWP64R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3S9AI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7PGHH' => 'arhy', 'AT2G32150' => 'ath', 'AT3G62040' => 'ath', 'AT5G02230' => 'ath', 'AT5G59480' => 'ath', 'AT5G59490' => 'ath', 'ATR0332G060' => 'atr', 'ATR0559G190' => 'atr', 'ATR0693G294' => 'atr', 'Atru.chr3.3975' => 'acertr', 'Atru.chr3.3976' => 'acertr', 'Atru.chr3.3977' => 'acertr', 'Atru.chr4.2498' => 'acertr', 'Atru.chr5.838' => 'acertr', 'Atru.chr8.1990' => 'acertr', 'Atru.chr8.1991' => 'acertr', 'Atru.chr8.1992' => 'acertr', 'AUR62001759' => 'cqu', 'AUR62009545' => 'cqu', 'AUR62010474' => 'cqu', 'AUR62025820' => 'cqu', 'AUR62030422' => 'cqu', 'AUR62033605' => 'cqu', 'AUR62038615' => 'cqu', 'AUR62041347' => 'cqu', 'BcaB01g04574' => 'bca', 'BcaB02g09263' => 'bca', 'BcaB02g10453' => 'bca', 'BcaB05g22513' => 'bca', 'BcaB08g36253' => 'bca', 'BcaB08g36254' => 'bca', 'BcaC01g06519' => 'bca', 'BcaC02g11889' => 'bca', 'BcaC03g14010' => 'bca', 'BcaC03g18439' => 'bca', 'BcaC04g19765' => 'bca', 'BcaC09g48432' => 'bca', 'BcaNung07302' => 'bca', 'BolC2t06040H' => 'bol', 'BolC2t07346H' => 'bol', 'BolC3t13817H' => 'bol', 'BolC4t22625H' => 'bol', 'BolC4t23297H' => 'bol', 'BolC8t51278H' => 'bol', 'BolC9t58050H' => 'bol', 'BolC9t58051H' => 'bol', 'BolC9t60163H' => 'bol', 'BraA02t04712Z' => 'bra', 'BraA02t05791Z' => 'bra', 'BraA03t10483Z' => 'bra', 'BraA05t19795Z' => 'bra', 'BraA05t20276Z' => 'bra', 'BraA09t40827Z' => 'bra', 'BraA10t43750Z' => 'bra', 'BraA10t43751Z' => 'bra', 'BraA10t45370Z' => 'bra', 'C02p00400' => 'bna', 'C02p12460' => 'bna', 'C03p13680' => 'bna', 'C04p10270' => 'bna', 'C04p17500' => 'bna', 'C08p37010' => 'bna', 'C09p51880' => 'bna', 'C09p51890' => 'bna', 'C09p74300' => 'bna', 'CAN.G179.26' => 'can', 'CAN.G3384.1' => 'can', 'CAN.G394.68' => 'can', 'CAN.G907.13' => 'can', 'CANSAT11G0012' => 'cansat', 'CANSAT25G1586' => 'cansat', 'CANSAT35G0735' => 'cansat', 'CANSAT54G0556' => 'cansat', 'CANSAT64G0356' => 'cansat', 'CANSAT78G2042' => 'cansat', 'CARHR125920' => 'chi', 'CARHR131910' => 'chi', 'CARHR172390' => 'chi', 'CARHR211140' => 'chi', 'CARHR285850' => 'chi', 'CARHR285860' => 'chi', 'Carub.0004s1347' => 'cru', 'Carub.0004s1960' => 'cru', 'Carub.0005s2880' => 'cru', 'Carub.0006s0107' => 'cru', 'Carub.0008s2015' => 'cru', 'Carub.0008s2016' => 'cru', 'Carub.0008s2017' => 'cru', 'Ca_01315_v3' => 'car', 'Ca_05063_v3' => 'car', 'Ca_10231_v3' => 'car', 'Ca_10913_v3' => 'car', 'Ca_19156_v3' => 'car', 'Ca_23644_v3' => 'car', 'Ca_26735_v3' => 'car', 'Cc01_g13130' => 'ccan', 'Cc02_g21690' => 'ccan', 'Cc03_g03600' => 'ccan', 'Cc06_g02510' => 'ccan', 'CDE02G1265' => 'cde', 'CDE05G0415' => 'cde', 'CDE08G1082' => 'cde', 'Cfa005780' => 'cfa', 'Cfa011522' => 'cfa', 'Cfa011523' => 'cfa', 'Cfa015627' => 'cfa', 'Cfa017359' => 'cfa', 'Ciclev10005687m.g' => 'ccl', 'Ciclev10012173m.g' => 'ccl', 'Ciclev10021621m.g' => 'ccl', 'Ciclev10028968m.g' => 'ccl', 'Ciclev10029907m.g' => 'ccl', 'CiPaw.01G164800' => 'cil', 'CiPaw.07G083700' => 'cil', 'CiPaw.07G127000' => 'cil', 'CiPaw.07G136900' => 'cil', 'CiPaw.08G081700' => 'cil', 'CiPaw.09G194600' => 'cil', 'CiPaw.10G146500' => 'cil', 'CiPaw.13G091500' => 'cil', 'CiPaw.13G091600' => 'cil', 'ClCG00G003390' => 'cla', 'ClCG01G007220' => 'cla', 'ClCG03G001370' => 'cla', 'ClCG04G008100' => 'cla', 'ClCG06G006110' => 'cla', 'ClCG06G006130' => 'cla', 'ClCG10G021210' => 'cla', 'COL.COLO4_07648' => 'col', 'COL.COLO4_07650' => 'col', 'COL.COLO4_07651' => 'col', 'COL.COLO4_14780' => 'col', 'COL.COLO4_18546' => 'col', 'COL.COLO4_18547' => 'col', 'COL.COLO4_23103' => 'col', 'COL.COLO4_30419' => 'col', 'COL.COLO4_34232' => 'col', 'Cpa.g.sc169.20' => 'cpa', 'Cpa.g.sc57.45' => 'cpa', 'Cpa.g.sc58.124' => 'cpa', 'Cpa.g.sc58.125' => 'cpa', 'Cpa.g.sc81.118' => 'cpa', 'Cpa.g.sc81.119' => 'cpa', 'Cre12.g524700' => 'cre', 'CsaV3_1G034430' => 'csa', 'CsaV3_1G034440' => 'csa', 'CsaV3_1G034450' => 'csa', 'CsaV3_3G034830' => 'csa', 'CsaV3_4G025090' => 'csa', 'CsaV3_5G018660' => 'csa', 'CsaV3_6G038160' => 'csa', 'CSS0003447' => 'camsi', 'CSS0017840' => 'camsi', 'CSS0019260' => 'camsi', 'CSS0040375' => 'camsi', 'CSS0042533' => 'camsi', 'DCAR_005960' => 'dca', 'DCAR_012104' => 'dca', 'DCAR_012105' => 'dca', 'DCAR_012293' => 'dca', 'DCAR_015632' => 'dca', 'DCAR_024602' => 'dca', 'DCAR_028752' => 'dca', 'Dinv06261' => 'din', 'Dinv13982' => 'din', 'Dinv17029' => 'din', 'Dinv18463' => 'din', 'Dinv33181' => 'din', 'Dinv35585' => 'din', 'Dinv37161' => 'din', 'Dinv42977' => 'din', 'Dinv43122' => 'din', 'Dinv44517' => 'din', 'Duzib093G0256' => 'dzi', 'Duzib106G1254' => 'dzi', 'Duzib128G1789' => 'dzi', 'Duzib133G0633' => 'dzi', 'Duzib138G0510' => 'dzi', 'Duzib150G1084' => 'dzi', 'Duzib168G0488' => 'dzi', 'Duzib168G1523' => 'dzi', 'Duzib170G0133' => 'dzi', 'ECA234G1433' => 'eca', 'ECA236G1432' => 'eca', 'ECA236G2256' => 'eca', 'ECA236G2365' => 'eca', 'ECA236G4830' => 'eca', 'ECA248G1505' => 'eca', 'EL10Ac3g06431' => 'bvu', 'EL10Ac5g12577' => 'bvu', 'EL10Ac6g13533' => 'bvu', 'EL10Ac7g16045' => 'bvu', 'Eucgr.A01281' => 'egr', 'Eucgr.B02326' => 'egr', 'Eucgr.H03532' => 'egr', 'Eucgr.K00553' => 'egr', 'Eucgr.K03116' => 'egr', 'FAN02G3963' => 'fan', 'FAN05G0438' => 'fan', 'FAN09G2434' => 'fan', 'FAN12G3984' => 'fan', 'FAN14G0798' => 'fan', 'FAN17G0652' => 'fan', 'FAN19G1988' => 'fan', 'FAN22G0632' => 'fan', 'FAN23G0387' => 'fan', 'FAN26G1323' => 'fan', 'FAN28G0666' => 'fan', 'FvH4_1g26080' => 'fve', 'FvH4_3g36780' => 'fve', 'FvH4_4g15270' => 'fve', 'FvH4_6g13490' => 'fve', 'Glyma.01G098700' => 'gma', 'Glyma.03G065900' => 'gma', 'Glyma.03G073754' => 'gma', 'Glyma.03G073758' => 'gma', 'Glyma.03G083200' => 'gma', 'Glyma.03G225500' => 'gma', 'Glyma.05G037766' => 'gma', 'Glyma.07G133500' => 'gma', 'Glyma.10G139400' => 'gma', 'Glyma.10G248900' => 'gma', 'Glyma.11G137800' => 'gma', 'Glyma.12G061300' => 'gma', 'Glyma.13G337900' => 'gma', 'Glyma.15G036600' => 'gma', 'Glyma.18G182800' => 'gma', 'Glyma.19G222500' => 'gma', 'Glyma.20G144800' => 'gma', 'Gohir.A01G222000' => 'ghi', 'Gohir.A03G044000' => 'ghi', 'Gohir.A03G044100' => 'ghi', 'Gohir.A04G083100' => 'ghi', 'Gohir.A07G127200' => 'ghi', 'Gohir.A07G132400' => 'ghi', 'Gohir.A08G000700' => 'ghi', 'Gohir.A11G327300' => 'ghi', 'Gohir.D01G211500' => 'ghi', 'Gohir.D03G123400' => 'ghi', 'Gohir.D03G123500' => 'ghi', 'Gohir.D04G121800' => 'ghi', 'Gohir.D07G131500' => 'ghi', 'Gohir.D07G136600' => 'ghi', 'Gohir.D08G011600' => 'ghi', 'Gohir.D11G346200' => 'ghi', 'Gorai.001G142800' => 'gra', 'Gorai.001G148700' => 'gra', 'Gorai.002G257300' => 'gra', 'Gorai.003G130000' => 'gra', 'Gorai.003G130100' => 'gra', 'Gorai.004G005300' => 'gra', 'Gorai.007G376500' => 'gra', 'Gorai.012G104700' => 'gra', 'GSVIVG01017946001' => 'vvi', 'GSVIVG01024928001' => 'vvi', 'GSVIVG01028227001' => 'vvi', 'GSVIVG01034151001' => 'vvi', 'HanXRQChr05g0135031' => 'han', 'HanXRQChr05g0135041' => 'han', 'HanXRQChr05g0140021' => 'han', 'HanXRQChr06g0178981' => 'han', 'HanXRQChr07g0188251' => 'han', 'HanXRQChr08g0235311' => 'han', 'HanXRQChr09g0271011' => 'han', 'HanXRQChr10g0293321' => 'han', 'HanXRQChr13g0388171' => 'han', 'Haze_00916' => 'cav', 'Haze_05063' => 'cav', 'Haze_20814' => 'cav', 'Haze_24128' => 'cav', 'Hma1.2p1_0745F.1_g212010' => 'hma', 'Hma1.2p1_0757F.1_g213260' => 'hma', 'Hma1.2p1_0936F.1_g238840' => 'hma', 'Hma1.2p1_1735F.1_g299890' => 'hma', 'Hma1.2p1_1861F.1_g305685' => 'hma', 'HPP92_003397' => 'vpl', 'HPP92_012597' => 'vpl', 'HPP92_015520' => 'vpl', 'HPP92_015539' => 'vpl', 'HPP92_020373' => 'vpl', 'Hund04938' => 'sun', 'Hund10677' => 'sun', 'Hund11033' => 'sun', 'Hund12155' => 'sun', 'Lalb_Chr01g0022551' => 'lal', 'Lalb_Chr03g0042341' => 'lal', 'Lalb_Chr07g0192931' => 'lal', 'Lalb_Chr12g0209551' => 'lal', 'Lalb_Chr19g0125251' => 'lal', 'Lalb_Chr19g0137891' => 'lal', 'Lalb_Chr21g0304641' => 'lal', 'Lalb_Chr21g0309881' => 'lal', 'Lj1A5T12' => 'lonja', 'Lj1C148G10' => 'lonja', 'Lj2A93T83' => 'lonja', 'Lj3A738G68' => 'lonja', 'Lj3C966T1' => 'lonja', 'Lj3g0018958' => 'lja', 'Lj3g0021831' => 'lja', 'Lj3g0025443' => 'lja', 'Lj4g0026809' => 'lja', 'Lj5g0012558' => 'lja', 'Lj5g0021586' => 'lja', 'Lsat_1_v5_gn_5_156840' => 'lsa', 'Lsat_1_v5_gn_8_73460' => 'lsa', 'Lsat_1_v5_gn_8_73481' => 'lsa', 'Lsat_1_v5_gn_9_31601' => 'lsa', 'Lsat_1_v5_gn_9_77320' => 'lsa', 'Manes.01G171300' => 'mes', 'Manes.01G171400' => 'mes', 'Manes.01G236100' => 'mes', 'Manes.02G130500' => 'mes', 'Manes.02G130600' => 'mes', 'Manes.03G180200' => 'mes', 'Manes.05G007000' => 'mes', 'Manes.08G084400' => 'mes', 'Manes.09G092600' => 'mes', 'Manes.15G027900' => 'mes', 'MBI04_g40948_MAGBIO' => 'mbi', 'MBI14_g12123_MAGBIO' => 'mbi', 'MBI18_g28915_MAGBIO' => 'mbi', 'MCO09G053' => 'mco', 'MCO11G782' => 'mco', 'MCO15G215' => 'mco', 'MD03G1088500' => 'mdo', 'MD03G1088600' => 'mdo', 'MD04G1130800' => 'mdo', 'MD09G1291700' => 'mdo', 'MD11G1097500' => 'mdo', 'MD11G1097600' => 'mdo', 'MD12G1143900' => 'mdo', 'MD13G1191400' => 'mdo', 'MD16G1191500' => 'mdo', 'Medtr1g085570' => 'mtr', 'Medtr1g104610' => 'mtr', 'Medtr2g097520' => 'mtr', 'Medtr4g021800' => 'mtr', 'Medtr4g021825' => 'mtr', 'Medtr4g064270' => 'mtr', 'Medtr4g064380' => 'mtr', 'Medtr7g062150' => 'mtr', 'MELO3C003138.2' => 'cme', 'MELO3C005187.2' => 'cme', 'MELO3C009252.2' => 'cme', 'MELO3C014481.2' => 'cme', 'MELO3C020616.2' => 'cme', 'MELO3C020617.2' => 'cme', 'MELO3C020618.2' => 'cme', 'Migut.G00328' => 'egut', 'Migut.J00320' => 'egut', 'Migut.L01000' => 'egut', 'Migut.L01953' => 'egut', 'MSTRG.10253' => 'ama', 'MSTRG.19077' => 'ama', 'MSTRG.26780' => 'ama', 'MSTRG.4023' => 'ama', 'MSTRG.5655' => 'ama', 'MSTRG.9992' => 'ama', 'Nitab4.5_0000043g0310' => 'nta', 'Nitab4.5_0000463g0080' => 'nta', 'Nitab4.5_0000705g0170' => 'nta', 'Nitab4.5_0001326g0060' => 'nta', 'Nitab4.5_0001628g0030' => 'nta', 'Nitab4.5_0002103g0110' => 'nta', 'Nitab4.5_0002946g0030' => 'nta', 'Nitab4.5_0004639g0030' => 'nta', 'Nn2g11149' => 'nnu', 'Nn2g13389' => 'nnu', 'Nn4g25326' => 'nnu', 'Nn4g26290' => 'nnu', 'Nn5g29865' => 'nnu', 'Oeu004163.1' => 'oeu', 'Oeu006901.1' => 'oeu', 'Oeu010096.1' => 'oeu', 'Oeu024340.1' => 'oeu', 'Oeu048369.1' => 'oeu', 'Os01g0973000' => 'osa', 'Os03g0273800' => 'osa', 'Os03g0701200' => 'osa', 'Os03g0834050' => 'osa', 'Os07g0634400' => 'osa', 'Peaxi162Scf00092g01414' => 'pax', 'Peaxi162Scf00165g00818' => 'pax', 'Peaxi162Scf00309g00516' => 'pax', 'Peaxi162Scf00774g00218' => 'pax', 'PGR004G1824' => 'pgr', 'PGR004G2606' => 'pgr', 'PGR031G2716' => 'pgr', 'PGR102G2460' => 'pgr', 'PGR142G2599' => 'pgr', 'PGSC0003DMG400000843' => 'stu', 'PGSC0003DMG400008829' => 'stu', 'PGSC0003DMG400030418' => 'stu', 'PGSC0003DMG400031834' => 'stu', 'PGSC0003DMG401028300' => 'stu', 'PGSC0003DMG402028300' => 'stu', 'Phvul.001G219300' => 'pvu', 'Phvul.007G056000' => 'pvu', 'Phvul.007G208000' => 'pvu', 'Phvul.008G119500' => 'pvu', 'Phvul.010G011200' => 'pvu', 'Phvul.010G014800' => 'pvu', 'Phvul.011G062900' => 'pvu', 'Phvul.L007043' => 'pvu', 'Potri.001G242300' => 'ptr', 'Potri.002G185300' => 'ptr', 'Potri.006G086900' => 'ptr', 'Potri.008G151700' => 'ptr', 'Potri.009G033500' => 'ptr', 'Potri.010G089300' => 'ptr', 'Potri.014G110800' => 'ptr', 'Pp3c27_8130' => 'ppa', 'Pp3c6_27410' => 'ppa', 'PRCOL_00001659' => 'pco', 'PRCOL_00001927' => 'pco', 'PRCOL_00003649' => 'pco', 'Prupe.1G011600' => 'ppe', 'Prupe.3G000800' => 'ppe', 'Prupe.3G001100' => 'ppe', 'Prupe.6G072700' => 'ppe', 'Prupe.6G072800' => 'ppe', 'Prupe.6G257300' => 'ppe', 'Prupe.8G033000' => 'ppe', 'Psat0s2633g0080' => 'psa', 'Psat0s3396g0080' => 'psa', 'Psat0s3396g0200' => 'psa', 'Psat3g139080' => 'psa', 'Psat5g285080' => 'psa', 'Psat6g157760' => 'psa', 'Psat6g208440' => 'psa', 'Psat7g215320' => 'psa', 'Psat7g215400' => 'psa', 'Psat7g235600' => 'psa', 'Psat7g235760' => 'psa', 'PSO063G4603' => 'pso', 'PSO210G0182' => 'pso', 'PSO210G0196' => 'pso', 'PSO339G0394' => 'pso', 'PSO339G4127' => 'pso', 'PSO513G0064' => 'pso', 'PSO761G0079' => 'pso', 'QL01p031003' => 'qlo', 'QL01p031078' => 'qlo', 'QL06p003004' => 'qlo', 'QL07p048731' => 'qlo', 'QL09p037427' => 'qlo', 'RcHm_v2.0_Chr3g0466361' => 'rch', 'RcHm_v2.0_Chr3g0485571' => 'rch', 'RcHm_v2.0_Chr4g0416551' => 'rch', 'RcHm_v2.0_Chr5g0065831' => 'rch', 'Rhsim01G0230500' => 'rsi', 'Rhsim05G0194000' => 'rsi', 'Rhsim08G0250400' => 'rsi', 'Sabra02G0131000' => 'sbr', 'Sabra06G0066300' => 'sbr', 'Sabra08G0115500' => 'sbr', 'Sabra09G0023900' => 'sbr', 'Sabra10G0054000' => 'sbr', 'Sabra14G0081500' => 'sbr', 'Sabra16G0147100' => 'sbr', 'SalBow2G2957' => 'sbo', 'SalBow4G3320' => 'sbo', 'SalBow8G1894' => 'sbo', 'Sc07g0007950' => 'sci', 'Sc12g0001360' => 'sci', 'Sc13g0004330' => 'sci', 'Sc20g0005010' => 'sci', 'Sed0000361' => 'sed', 'Sed0001706' => 'sed', 'Sed0002422' => 'sed', 'Sed0004029' => 'sed', 'Sed0004602' => 'sed', 'Sed0004943' => 'sed', 'Sed0008646' => 'sed', 'Sed0023313' => 'sed', 'Sed0024843' => 'sed', 'SEGI_00081' => 'sgi', 'SEGI_00947' => 'sgi', 'SEGI_04046' => 'sgi', 'SEGI_06880' => 'sgi', 'SEGI_09736' => 'sgi', 'SEGI_12741' => 'sgi', 'SEGI_14530' => 'sgi', 'SEGI_20705' => 'sgi', 'SEGI_26088' => 'sgi', 'SEGI_28323' => 'sgi', 'SEGI_33343' => 'sgi', 'SGA_v2.0_scaffold126G33775' => 'sas', 'SGA_v2.0_scaffold2G01337' => 'sas', 'SGA_v2.0_scaffold38G15006' => 'sas', 'SGA_v2.0_scaffold39G15264' => 'sas', 'SGA_v2.0_scaffold453G51880' => 'sas', 'SHI12696' => 'shi', 'SMO367G1096' => 'smo', 'Solyc01g068630.3' => 'sly', 'Solyc05g011880.3' => 'sly', 'Solyc06g076300.3' => 'sly', 'Solyc09g010940.4' => 'sly', 'Solyc09g075890.3' => 'sly', 'Sopen01g030560' => 'spe', 'Sopen05g006630' => 'spe', 'Sopen06g032720' => 'spe', 'Sopen09g005660' => 'spe', 'Sopen09g030690' => 'spe', 'Sp4g14540' => 'spa', 'Sp4g20030' => 'spa', 'Sp5g01320' => 'spa', 'Sp6g21170' => 'spa', 'Sp6g21180' => 'spa', 'Sp6g21190' => 'spa', 'Sp6g40220' => 'spa', 'TAR362G0122' => 'tar', 'TAR362G1338' => 'tar', 'TAR369G0590' => 'tar', 'TAR371G0824' => 'tar', 'TAR622G1429' => 'tar', 'TAR623G0734' => 'tar', 'TAR625G0441' => 'tar', 'TAR629G0976' => 'tar', 'TAR633G1195' => 'tar', 'TAR636G2660' => 'tar', 'THA.LOC104799440' => 'tha', 'THA.LOC104800966' => 'tha', 'THA.LOC104806559' => 'tha', 'THA.LOC104810765' => 'tha', 'THA.LOC104816266' => 'tha', 'THA.LOC104817419' => 'tha', 'THA.LOC104827021' => 'tha', 'Thecc.01G327400' => 'tca', 'Thecc.04G229200' => 'tca', 'Thecc.05G037400' => 'tca', 'Thecc.09G318600' => 'tca', 'Thecc.09G318700' => 'tca', 'Thhalv10006238m.g' => 'esa', 'Thhalv10014321m.g' => 'esa', 'Thhalv10014335m.g' => 'esa', 'Thhalv10015826m.g' => 'esa', 'Thhalv10017107m.g' => 'esa', 'Thhalv10017180m.g' => 'esa', 'Thhalv10029339m.g' => 'esa', 'TPR.G1699' => 'tpr', 'TPR.G23609' => 'tpr', 'TPR.G3081' => 'tpr', 'TPR.G40397' => 'tpr', 'TPR.G5522' => 'tpr', 'TPR.G5618' => 'tpr', 'TPR.G5626' => 'tpr', 'TWI09G1632' => 'twi', 'TWI23G1230' => 'twi', 'TWI53G1064' => 'twi', 'TWI59G0751' => 'twi', 'TWI74G0947' => 'twi', 'TWI77G0337' => 'twi', 'TWI79G1254' => 'twi', 'unitig_0.g2341' => 'ugi', 'unitig_26.g10006' => 'ugi', 'unitig_26.g10008' => 'ugi', 'unitig_26.g9192' => 'ugi', 'vmacro14547' => 'vma', 'vmacro15333' => 'vma', 'vmacro18743' => 'vma', 'vmacro20166' => 'vma', 'VMungo0331G0523' => 'vmu', 'VMungo0331G1202' => 'vmu', 'VMungo0720G1228' => 'vmu', 'VMungo0720G1514' => 'vmu', 'VMungo1080G0169' => 'vmu', 'VMungo1127G1475' => 'vmu', 'VMungo1383G1208' => 'vmu', 'VMungo1383G1698' => 'vmu', 'Zm00001eb012270' => 'zma', 'Zm00001eb054100' => 'zma', 'Zm00001eb063350' => 'zma', 'Zm00001eb328560' => 'zma', 'Zm00001eb342820' => 'zma', 'Zm00001eb362210' => 'zma', 'Zm00001eb397730' => 'zma', 'Zm00001eb399750' => 'zma' ) $gf_id = 'HOM05D000959' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000959' ) $data_identifier = 'HOM05D000959' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 5, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 5, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 10, 'mbi' => (int) 3, 'mco' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 2, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 3, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 11, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399750' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000959', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '622', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p07100' => 'bna', 'A03p11720' => 'bna', 'A05p08300' => 'bna', 'A05p13380' => 'bna', 'A09p54130' => 'bna', 'A10p16690' => 'bna', 'A10p16700' => 'bna', 'A10p33390' => 'bna', 'Aa31LG10G16020' => 'aar', 'Aa31LG1G11810' => 'aar', 'Aa31LG1G11830' => 'aar', 'Aa31LG1G22510' => 'aar', 'Aa31LG5G4890' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5793' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2310' => 'aag', 'Actinidia08499' => 'ach', 'Actinidia11262' => 'ach', 'Actinidia23926' => 'ach', 'Actinidia34420' => 'ach', 'Actinidia36970' => 'ach', 'Ah.02g111220' => 'amhyb', 'Ah.15g097750' => 'amhyb', 'AL4G27500' => 'aly', 'AL6G11470' => 'aly', 'AL8G35950' => 'aly', 'AL8G35960' => 'aly', 'AL8G35970' => 'aly', 'Aqoxy1G00912' => 'aox', 'Aqoxy2G02253' => 'aox', 'Aqoxy2G02411' => 'aox', 'Aqoxy5G00485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BZ66YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K8ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM4FUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6BF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HFV7XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25JBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0YNNV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MAKK6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P70IT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP2Z6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V61LZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YWP64R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3S9AI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7PGHH' => 'arhy', 'AT2G32150' => 'ath', 'AT3G62040' => 'ath', 'AT5G02230' => 'ath', 'AT5G59480' => 'ath', 'AT5G59490' => 'ath', 'ATR0332G060' => 'atr', 'ATR0559G190' => 'atr', 'ATR0693G294' => 'atr', 'Atru.chr3.3975' => 'acertr', 'Atru.chr3.3976' => 'acertr', 'Atru.chr3.3977' => 'acertr', 'Atru.chr4.2498' => 'acertr', 'Atru.chr5.838' => 'acertr', 'Atru.chr8.1990' => 'acertr', 'Atru.chr8.1991' => 'acertr', 'Atru.chr8.1992' => 'acertr', 'AUR62001759' => 'cqu', 'AUR62009545' => 'cqu', 'AUR62010474' => 'cqu', 'AUR62025820' => 'cqu', 'AUR62030422' => 'cqu', 'AUR62033605' => 'cqu', 'AUR62038615' => 'cqu', 'AUR62041347' => 'cqu', 'BcaB01g04574' => 'bca', 'BcaB02g09263' => 'bca', 'BcaB02g10453' => 'bca', 'BcaB05g22513' => 'bca', 'BcaB08g36253' => 'bca', 'BcaB08g36254' => 'bca', 'BcaC01g06519' => 'bca', 'BcaC02g11889' => 'bca', 'BcaC03g14010' => 'bca', 'BcaC03g18439' => 'bca', 'BcaC04g19765' => 'bca', 'BcaC09g48432' => 'bca', 'BcaNung07302' => 'bca', 'BolC2t06040H' => 'bol', 'BolC2t07346H' => 'bol', 'BolC3t13817H' => 'bol', 'BolC4t22625H' => 'bol', 'BolC4t23297H' => 'bol', 'BolC8t51278H' => 'bol', 'BolC9t58050H' => 'bol', 'BolC9t58051H' => 'bol', 'BolC9t60163H' => 'bol', 'BraA02t04712Z' => 'bra', 'BraA02t05791Z' => 'bra', 'BraA03t10483Z' => 'bra', 'BraA05t19795Z' => 'bra', 'BraA05t20276Z' => 'bra', 'BraA09t40827Z' => 'bra', 'BraA10t43750Z' => 'bra', 'BraA10t43751Z' => 'bra', 'BraA10t45370Z' => 'bra', 'C02p00400' => 'bna', 'C02p12460' => 'bna', 'C03p13680' => 'bna', 'C04p10270' => 'bna', 'C04p17500' => 'bna', 'C08p37010' => 'bna', 'C09p51880' => 'bna', 'C09p51890' => 'bna', 'C09p74300' => 'bna', 'CAN.G179.26' => 'can', 'CAN.G3384.1' => 'can', 'CAN.G394.68' => 'can', 'CAN.G907.13' => 'can', 'CANSAT11G0012' => 'cansat', 'CANSAT25G1586' => 'cansat', 'CANSAT35G0735' => 'cansat', 'CANSAT54G0556' => 'cansat', 'CANSAT64G0356' => 'cansat', 'CANSAT78G2042' => 'cansat', 'CARHR125920' => 'chi', 'CARHR131910' => 'chi', 'CARHR172390' => 'chi', 'CARHR211140' => 'chi', 'CARHR285850' => 'chi', 'CARHR285860' => 'chi', 'Carub.0004s1347' => 'cru', 'Carub.0004s1960' => 'cru', 'Carub.0005s2880' => 'cru', 'Carub.0006s0107' => 'cru', 'Carub.0008s2015' => 'cru', 'Carub.0008s2016' => 'cru', 'Carub.0008s2017' => 'cru', 'Ca_01315_v3' => 'car', 'Ca_05063_v3' => 'car', 'Ca_10231_v3' => 'car', 'Ca_10913_v3' => 'car', 'Ca_19156_v3' => 'car', 'Ca_23644_v3' => 'car', 'Ca_26735_v3' => 'car', 'Cc01_g13130' => 'ccan', 'Cc02_g21690' => 'ccan', 'Cc03_g03600' => 'ccan', 'Cc06_g02510' => 'ccan', 'CDE02G1265' => 'cde', 'CDE05G0415' => 'cde', 'CDE08G1082' => 'cde', 'Cfa005780' => 'cfa', 'Cfa011522' => 'cfa', 'Cfa011523' => 'cfa', 'Cfa015627' => 'cfa', 'Cfa017359' => 'cfa', 'Ciclev10005687m.g' => 'ccl', 'Ciclev10012173m.g' => 'ccl', 'Ciclev10021621m.g' => 'ccl', 'Ciclev10028968m.g' => 'ccl', 'Ciclev10029907m.g' => 'ccl', 'CiPaw.01G164800' => 'cil', 'CiPaw.07G083700' => 'cil', 'CiPaw.07G127000' => 'cil', 'CiPaw.07G136900' => 'cil', 'CiPaw.08G081700' => 'cil', 'CiPaw.09G194600' => 'cil', 'CiPaw.10G146500' => 'cil', 'CiPaw.13G091500' => 'cil', 'CiPaw.13G091600' => 'cil', 'ClCG00G003390' => 'cla', 'ClCG01G007220' => 'cla', 'ClCG03G001370' => 'cla', 'ClCG04G008100' => 'cla', 'ClCG06G006110' => 'cla', 'ClCG06G006130' => 'cla', 'ClCG10G021210' => 'cla', 'COL.COLO4_07648' => 'col', 'COL.COLO4_07650' => 'col', 'COL.COLO4_07651' => 'col', 'COL.COLO4_14780' => 'col', 'COL.COLO4_18546' => 'col', 'COL.COLO4_18547' => 'col', 'COL.COLO4_23103' => 'col', 'COL.COLO4_30419' => 'col', 'COL.COLO4_34232' => 'col', 'Cpa.g.sc169.20' => 'cpa', 'Cpa.g.sc57.45' => 'cpa', 'Cpa.g.sc58.124' => 'cpa', 'Cpa.g.sc58.125' => 'cpa', 'Cpa.g.sc81.118' => 'cpa', 'Cpa.g.sc81.119' => 'cpa', 'Cre12.g524700' => 'cre', 'CsaV3_1G034430' => 'csa', 'CsaV3_1G034440' => 'csa', 'CsaV3_1G034450' => 'csa', 'CsaV3_3G034830' => 'csa', 'CsaV3_4G025090' => 'csa', 'CsaV3_5G018660' => 'csa', 'CsaV3_6G038160' => 'csa', 'CSS0003447' => 'camsi', 'CSS0017840' => 'camsi', 'CSS0019260' => 'camsi', 'CSS0040375' => 'camsi', 'CSS0042533' => 'camsi', 'DCAR_005960' => 'dca', 'DCAR_012104' => 'dca', 'DCAR_012105' => 'dca', 'DCAR_012293' => 'dca', 'DCAR_015632' => 'dca', 'DCAR_024602' => 'dca', 'DCAR_028752' => 'dca', 'Dinv06261' => 'din', 'Dinv13982' => 'din', 'Dinv17029' => 'din', 'Dinv18463' => 'din', 'Dinv33181' => 'din', 'Dinv35585' => 'din', 'Dinv37161' => 'din', 'Dinv42977' => 'din', 'Dinv43122' => 'din', 'Dinv44517' => 'din', 'Duzib093G0256' => 'dzi', 'Duzib106G1254' => 'dzi', 'Duzib128G1789' => 'dzi', 'Duzib133G0633' => 'dzi', 'Duzib138G0510' => 'dzi', 'Duzib150G1084' => 'dzi', 'Duzib168G0488' => 'dzi', 'Duzib168G1523' => 'dzi', 'Duzib170G0133' => 'dzi', 'ECA234G1433' => 'eca', 'ECA236G1432' => 'eca', 'ECA236G2256' => 'eca', 'ECA236G2365' => 'eca', 'ECA236G4830' => 'eca', 'ECA248G1505' => 'eca', 'EL10Ac3g06431' => 'bvu', 'EL10Ac5g12577' => 'bvu', 'EL10Ac6g13533' => 'bvu', 'EL10Ac7g16045' => 'bvu', 'Eucgr.A01281' => 'egr', 'Eucgr.B02326' => 'egr', 'Eucgr.H03532' => 'egr', 'Eucgr.K00553' => 'egr', 'Eucgr.K03116' => 'egr', 'FAN02G3963' => 'fan', 'FAN05G0438' => 'fan', 'FAN09G2434' => 'fan', 'FAN12G3984' => 'fan', 'FAN14G0798' => 'fan', 'FAN17G0652' => 'fan', 'FAN19G1988' => 'fan', 'FAN22G0632' => 'fan', 'FAN23G0387' => 'fan', 'FAN26G1323' => 'fan', 'FAN28G0666' => 'fan', 'FvH4_1g26080' => 'fve', 'FvH4_3g36780' => 'fve', 'FvH4_4g15270' => 'fve', 'FvH4_6g13490' => 'fve', 'Glyma.01G098700' => 'gma', 'Glyma.03G065900' => 'gma', 'Glyma.03G073754' => 'gma', 'Glyma.03G073758' => 'gma', 'Glyma.03G083200' => 'gma', 'Glyma.03G225500' => 'gma', 'Glyma.05G037766' => 'gma', 'Glyma.07G133500' => 'gma', 'Glyma.10G139400' => 'gma', 'Glyma.10G248900' => 'gma', 'Glyma.11G137800' => 'gma', 'Glyma.12G061300' => 'gma', 'Glyma.13G337900' => 'gma', 'Glyma.15G036600' => 'gma', 'Glyma.18G182800' => 'gma', 'Glyma.19G222500' => 'gma', 'Glyma.20G144800' => 'gma', 'Gohir.A01G222000' => 'ghi', 'Gohir.A03G044000' => 'ghi', 'Gohir.A03G044100' => 'ghi', 'Gohir.A04G083100' => 'ghi', 'Gohir.A07G127200' => 'ghi', 'Gohir.A07G132400' => 'ghi', 'Gohir.A08G000700' => 'ghi', 'Gohir.A11G327300' => 'ghi', 'Gohir.D01G211500' => 'ghi', 'Gohir.D03G123400' => 'ghi', 'Gohir.D03G123500' => 'ghi', 'Gohir.D04G121800' => 'ghi', 'Gohir.D07G131500' => 'ghi', 'Gohir.D07G136600' => 'ghi', 'Gohir.D08G011600' => 'ghi', 'Gohir.D11G346200' => 'ghi', 'Gorai.001G142800' => 'gra', 'Gorai.001G148700' => 'gra', 'Gorai.002G257300' => 'gra', 'Gorai.003G130000' => 'gra', 'Gorai.003G130100' => 'gra', 'Gorai.004G005300' => 'gra', 'Gorai.007G376500' => 'gra', 'Gorai.012G104700' => 'gra', 'GSVIVG01017946001' => 'vvi', 'GSVIVG01024928001' => 'vvi', 'GSVIVG01028227001' => 'vvi', 'GSVIVG01034151001' => 'vvi', 'HanXRQChr05g0135031' => 'han', 'HanXRQChr05g0135041' => 'han', 'HanXRQChr05g0140021' => 'han', 'HanXRQChr06g0178981' => 'han', 'HanXRQChr07g0188251' => 'han', 'HanXRQChr08g0235311' => 'han', 'HanXRQChr09g0271011' => 'han', 'HanXRQChr10g0293321' => 'han', 'HanXRQChr13g0388171' => 'han', 'Haze_00916' => 'cav', 'Haze_05063' => 'cav', 'Haze_20814' => 'cav', 'Haze_24128' => 'cav', 'Hma1.2p1_0745F.1_g212010' => 'hma', 'Hma1.2p1_0757F.1_g213260' => 'hma', 'Hma1.2p1_0936F.1_g238840' => 'hma', 'Hma1.2p1_1735F.1_g299890' => 'hma', 'Hma1.2p1_1861F.1_g305685' => 'hma', 'HPP92_003397' => 'vpl', 'HPP92_012597' => 'vpl', 'HPP92_015520' => 'vpl', 'HPP92_015539' => 'vpl', 'HPP92_020373' => 'vpl', 'Hund04938' => 'sun', 'Hund10677' => 'sun', 'Hund11033' => 'sun', 'Hund12155' => 'sun', 'Lalb_Chr01g0022551' => 'lal', 'Lalb_Chr03g0042341' => 'lal', 'Lalb_Chr07g0192931' => 'lal', 'Lalb_Chr12g0209551' => 'lal', 'Lalb_Chr19g0125251' => 'lal', 'Lalb_Chr19g0137891' => 'lal', 'Lalb_Chr21g0304641' => 'lal', 'Lalb_Chr21g0309881' => 'lal', 'Lj1A5T12' => 'lonja', 'Lj1C148G10' => 'lonja', 'Lj2A93T83' => 'lonja', 'Lj3A738G68' => 'lonja', 'Lj3C966T1' => 'lonja', 'Lj3g0018958' => 'lja', 'Lj3g0021831' => 'lja', 'Lj3g0025443' => 'lja', 'Lj4g0026809' => 'lja', 'Lj5g0012558' => 'lja', 'Lj5g0021586' => 'lja', 'Lsat_1_v5_gn_5_156840' => 'lsa', 'Lsat_1_v5_gn_8_73460' => 'lsa', 'Lsat_1_v5_gn_8_73481' => 'lsa', 'Lsat_1_v5_gn_9_31601' => 'lsa', 'Lsat_1_v5_gn_9_77320' => 'lsa', 'Manes.01G171300' => 'mes', 'Manes.01G171400' => 'mes', 'Manes.01G236100' => 'mes', 'Manes.02G130500' => 'mes', 'Manes.02G130600' => 'mes', 'Manes.03G180200' => 'mes', 'Manes.05G007000' => 'mes', 'Manes.08G084400' => 'mes', 'Manes.09G092600' => 'mes', 'Manes.15G027900' => 'mes', 'MBI04_g40948_MAGBIO' => 'mbi', 'MBI14_g12123_MAGBIO' => 'mbi', 'MBI18_g28915_MAGBIO' => 'mbi', 'MCO09G053' => 'mco', 'MCO11G782' => 'mco', 'MCO15G215' => 'mco', 'MD03G1088500' => 'mdo', 'MD03G1088600' => 'mdo', 'MD04G1130800' => 'mdo', 'MD09G1291700' => 'mdo', 'MD11G1097500' => 'mdo', 'MD11G1097600' => 'mdo', 'MD12G1143900' => 'mdo', 'MD13G1191400' => 'mdo', 'MD16G1191500' => 'mdo', 'Medtr1g085570' => 'mtr', 'Medtr1g104610' => 'mtr', 'Medtr2g097520' => 'mtr', 'Medtr4g021800' => 'mtr', 'Medtr4g021825' => 'mtr', 'Medtr4g064270' => 'mtr', 'Medtr4g064380' => 'mtr', 'Medtr7g062150' => 'mtr', 'MELO3C003138.2' => 'cme', 'MELO3C005187.2' => 'cme', 'MELO3C009252.2' => 'cme', 'MELO3C014481.2' => 'cme', 'MELO3C020616.2' => 'cme', 'MELO3C020617.2' => 'cme', 'MELO3C020618.2' => 'cme', 'Migut.G00328' => 'egut', 'Migut.J00320' => 'egut', 'Migut.L01000' => 'egut', 'Migut.L01953' => 'egut', 'MSTRG.10253' => 'ama', 'MSTRG.19077' => 'ama', 'MSTRG.26780' => 'ama', 'MSTRG.4023' => 'ama', 'MSTRG.5655' => 'ama', 'MSTRG.9992' => 'ama', 'Nitab4.5_0000043g0310' => 'nta', 'Nitab4.5_0000463g0080' => 'nta', 'Nitab4.5_0000705g0170' => 'nta', 'Nitab4.5_0001326g0060' => 'nta', 'Nitab4.5_0001628g0030' => 'nta', 'Nitab4.5_0002103g0110' => 'nta', 'Nitab4.5_0002946g0030' => 'nta', 'Nitab4.5_0004639g0030' => 'nta', 'Nn2g11149' => 'nnu', 'Nn2g13389' => 'nnu', 'Nn4g25326' => 'nnu', 'Nn4g26290' => 'nnu', 'Nn5g29865' => 'nnu', 'Oeu004163.1' => 'oeu', 'Oeu006901.1' => 'oeu', 'Oeu010096.1' => 'oeu', 'Oeu024340.1' => 'oeu', 'Oeu048369.1' => 'oeu', 'Os01g0973000' => 'osa', 'Os03g0273800' => 'osa', 'Os03g0701200' => 'osa', 'Os03g0834050' => 'osa', 'Os07g0634400' => 'osa', 'Peaxi162Scf00092g01414' => 'pax', 'Peaxi162Scf00165g00818' => 'pax', 'Peaxi162Scf00309g00516' => 'pax', 'Peaxi162Scf00774g00218' => 'pax', 'PGR004G1824' => 'pgr', 'PGR004G2606' => 'pgr', 'PGR031G2716' => 'pgr', 'PGR102G2460' => 'pgr', 'PGR142G2599' => 'pgr', 'PGSC0003DMG400000843' => 'stu', 'PGSC0003DMG400008829' => 'stu', 'PGSC0003DMG400030418' => 'stu', 'PGSC0003DMG400031834' => 'stu', 'PGSC0003DMG401028300' => 'stu', 'PGSC0003DMG402028300' => 'stu', 'Phvul.001G219300' => 'pvu', 'Phvul.007G056000' => 'pvu', 'Phvul.007G208000' => 'pvu', 'Phvul.008G119500' => 'pvu', 'Phvul.010G011200' => 'pvu', 'Phvul.010G014800' => 'pvu', 'Phvul.011G062900' => 'pvu', 'Phvul.L007043' => 'pvu', 'Potri.001G242300' => 'ptr', 'Potri.002G185300' => 'ptr', 'Potri.006G086900' => 'ptr', 'Potri.008G151700' => 'ptr', 'Potri.009G033500' => 'ptr', 'Potri.010G089300' => 'ptr', 'Potri.014G110800' => 'ptr', 'Pp3c27_8130' => 'ppa', 'Pp3c6_27410' => 'ppa', 'PRCOL_00001659' => 'pco', 'PRCOL_00001927' => 'pco', 'PRCOL_00003649' => 'pco', 'Prupe.1G011600' => 'ppe', 'Prupe.3G000800' => 'ppe', 'Prupe.3G001100' => 'ppe', 'Prupe.6G072700' => 'ppe', 'Prupe.6G072800' => 'ppe', 'Prupe.6G257300' => 'ppe', 'Prupe.8G033000' => 'ppe', 'Psat0s2633g0080' => 'psa', 'Psat0s3396g0080' => 'psa', 'Psat0s3396g0200' => 'psa', 'Psat3g139080' => 'psa', 'Psat5g285080' => 'psa', 'Psat6g157760' => 'psa', 'Psat6g208440' => 'psa', 'Psat7g215320' => 'psa', 'Psat7g215400' => 'psa', 'Psat7g235600' => 'psa', 'Psat7g235760' => 'psa', 'PSO063G4603' => 'pso', 'PSO210G0182' => 'pso', 'PSO210G0196' => 'pso', 'PSO339G0394' => 'pso', 'PSO339G4127' => 'pso', 'PSO513G0064' => 'pso', 'PSO761G0079' => 'pso', 'QL01p031003' => 'qlo', 'QL01p031078' => 'qlo', 'QL06p003004' => 'qlo', 'QL07p048731' => 'qlo', 'QL09p037427' => 'qlo', 'RcHm_v2.0_Chr3g0466361' => 'rch', 'RcHm_v2.0_Chr3g0485571' => 'rch', 'RcHm_v2.0_Chr4g0416551' => 'rch', 'RcHm_v2.0_Chr5g0065831' => 'rch', 'Rhsim01G0230500' => 'rsi', 'Rhsim05G0194000' => 'rsi', 'Rhsim08G0250400' => 'rsi', 'Sabra02G0131000' => 'sbr', 'Sabra06G0066300' => 'sbr', 'Sabra08G0115500' => 'sbr', 'Sabra09G0023900' => 'sbr', 'Sabra10G0054000' => 'sbr', 'Sabra14G0081500' => 'sbr', 'Sabra16G0147100' => 'sbr', 'SalBow2G2957' => 'sbo', 'SalBow4G3320' => 'sbo', 'SalBow8G1894' => 'sbo', 'Sc07g0007950' => 'sci', 'Sc12g0001360' => 'sci', 'Sc13g0004330' => 'sci', 'Sc20g0005010' => 'sci', 'Sed0000361' => 'sed', 'Sed0001706' => 'sed', 'Sed0002422' => 'sed', 'Sed0004029' => 'sed', 'Sed0004602' => 'sed', 'Sed0004943' => 'sed', 'Sed0008646' => 'sed', 'Sed0023313' => 'sed', 'Sed0024843' => 'sed', 'SEGI_00081' => 'sgi', 'SEGI_00947' => 'sgi', 'SEGI_04046' => 'sgi', 'SEGI_06880' => 'sgi', 'SEGI_09736' => 'sgi', 'SEGI_12741' => 'sgi', 'SEGI_14530' => 'sgi', 'SEGI_20705' => 'sgi', 'SEGI_26088' => 'sgi', 'SEGI_28323' => 'sgi', 'SEGI_33343' => 'sgi', 'SGA_v2.0_scaffold126G33775' => 'sas', 'SGA_v2.0_scaffold2G01337' => 'sas', 'SGA_v2.0_scaffold38G15006' => 'sas', 'SGA_v2.0_scaffold39G15264' => 'sas', 'SGA_v2.0_scaffold453G51880' => 'sas', 'SHI12696' => 'shi', 'SMO367G1096' => 'smo', 'Solyc01g068630.3' => 'sly', 'Solyc05g011880.3' => 'sly', 'Solyc06g076300.3' => 'sly', 'Solyc09g010940.4' => 'sly', 'Solyc09g075890.3' => 'sly', 'Sopen01g030560' => 'spe', 'Sopen05g006630' => 'spe', 'Sopen06g032720' => 'spe', 'Sopen09g005660' => 'spe', 'Sopen09g030690' => 'spe', 'Sp4g14540' => 'spa', 'Sp4g20030' => 'spa', 'Sp5g01320' => 'spa', 'Sp6g21170' => 'spa', 'Sp6g21180' => 'spa', 'Sp6g21190' => 'spa', 'Sp6g40220' => 'spa', 'TAR362G0122' => 'tar', 'TAR362G1338' => 'tar', 'TAR369G0590' => 'tar', 'TAR371G0824' => 'tar', 'TAR622G1429' => 'tar', 'TAR623G0734' => 'tar', 'TAR625G0441' => 'tar', 'TAR629G0976' => 'tar', 'TAR633G1195' => 'tar', 'TAR636G2660' => 'tar', 'THA.LOC104799440' => 'tha', 'THA.LOC104800966' => 'tha', 'THA.LOC104806559' => 'tha', 'THA.LOC104810765' => 'tha', 'THA.LOC104816266' => 'tha', 'THA.LOC104817419' => 'tha', 'THA.LOC104827021' => 'tha', 'Thecc.01G327400' => 'tca', 'Thecc.04G229200' => 'tca', 'Thecc.05G037400' => 'tca', 'Thecc.09G318600' => 'tca', 'Thecc.09G318700' => 'tca', 'Thhalv10006238m.g' => 'esa', 'Thhalv10014321m.g' => 'esa', 'Thhalv10014335m.g' => 'esa', 'Thhalv10015826m.g' => 'esa', 'Thhalv10017107m.g' => 'esa', 'Thhalv10017180m.g' => 'esa', 'Thhalv10029339m.g' => 'esa', 'TPR.G1699' => 'tpr', 'TPR.G23609' => 'tpr', 'TPR.G3081' => 'tpr', 'TPR.G40397' => 'tpr', 'TPR.G5522' => 'tpr', 'TPR.G5618' => 'tpr', 'TPR.G5626' => 'tpr', 'TWI09G1632' => 'twi', 'TWI23G1230' => 'twi', 'TWI53G1064' => 'twi', 'TWI59G0751' => 'twi', 'TWI74G0947' => 'twi', 'TWI77G0337' => 'twi', 'TWI79G1254' => 'twi', 'unitig_0.g2341' => 'ugi', 'unitig_26.g10006' => 'ugi', 'unitig_26.g10008' => 'ugi', 'unitig_26.g9192' => 'ugi', 'vmacro14547' => 'vma', 'vmacro15333' => 'vma', 'vmacro18743' => 'vma', 'vmacro20166' => 'vma', 'VMungo0331G0523' => 'vmu', 'VMungo0331G1202' => 'vmu', 'VMungo0720G1228' => 'vmu', 'VMungo0720G1514' => 'vmu', 'VMungo1080G0169' => 'vmu', 'VMungo1127G1475' => 'vmu', 'VMungo1383G1208' => 'vmu', 'VMungo1383G1698' => 'vmu', 'Zm00001eb012270' => 'zma', 'Zm00001eb054100' => 'zma', 'Zm00001eb063350' => 'zma', 'Zm00001eb328560' => 'zma', 'Zm00001eb342820' => 'zma', 'Zm00001eb362210' => 'zma', 'Zm00001eb397730' => 'zma', 'Zm00001eb399750' => 'zma' ), 'gf_id' => 'HOM05D000959', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000959' ), 'data_identifier' => 'HOM05D000959', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000959', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '622', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p07100' => 'bna', 'A03p11720' => 'bna', 'A05p08300' => 'bna', 'A05p13380' => 'bna', 'A09p54130' => 'bna', 'A10p16690' => 'bna', 'A10p16700' => 'bna', 'A10p33390' => 'bna', 'Aa31LG10G16020' => 'aar', 'Aa31LG1G11810' => 'aar', 'Aa31LG1G11830' => 'aar', 'Aa31LG1G22510' => 'aar', 'Aa31LG5G4890' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5793' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2310' => 'aag', 'Actinidia08499' => 'ach', 'Actinidia11262' => 'ach', 'Actinidia23926' => 'ach', 'Actinidia34420' => 'ach', 'Actinidia36970' => 'ach', 'Ah.02g111220' => 'amhyb', 'Ah.15g097750' => 'amhyb', 'AL4G27500' => 'aly', 'AL6G11470' => 'aly', 'AL8G35950' => 'aly', 'AL8G35960' => 'aly', 'AL8G35970' => 'aly', 'Aqoxy1G00912' => 'aox', 'Aqoxy2G02253' => 'aox', 'Aqoxy2G02411' => 'aox', 'Aqoxy5G00485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BZ66YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K8ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM4FUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6BF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HFV7XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25JBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0YNNV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MAKK6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P70IT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP2Z6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V61LZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YWP64R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3S9AI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7PGHH' => 'arhy', 'AT2G32150' => 'ath', 'AT3G62040' => 'ath', 'AT5G02230' => 'ath', 'AT5G59480' => 'ath', 'AT5G59490' => 'ath', 'ATR0332G060' => 'atr', 'ATR0559G190' => 'atr', 'ATR0693G294' => 'atr', 'Atru.chr3.3975' => 'acertr', 'Atru.chr3.3976' => 'acertr', 'Atru.chr3.3977' => 'acertr', 'Atru.chr4.2498' => 'acertr', 'Atru.chr5.838' => 'acertr', 'Atru.chr8.1990' => 'acertr', 'Atru.chr8.1991' => 'acertr', 'Atru.chr8.1992' => 'acertr', 'AUR62001759' => 'cqu', 'AUR62009545' => 'cqu', 'AUR62010474' => 'cqu', 'AUR62025820' => 'cqu', 'AUR62030422' => 'cqu', 'AUR62033605' => 'cqu', 'AUR62038615' => 'cqu', 'AUR62041347' => 'cqu', 'BcaB01g04574' => 'bca', 'BcaB02g09263' => 'bca', 'BcaB02g10453' => 'bca', 'BcaB05g22513' => 'bca', 'BcaB08g36253' => 'bca', 'BcaB08g36254' => 'bca', 'BcaC01g06519' => 'bca', 'BcaC02g11889' => 'bca', 'BcaC03g14010' => 'bca', 'BcaC03g18439' => 'bca', 'BcaC04g19765' => 'bca', 'BcaC09g48432' => 'bca', 'BcaNung07302' => 'bca', 'BolC2t06040H' => 'bol', 'BolC2t07346H' => 'bol', 'BolC3t13817H' => 'bol', 'BolC4t22625H' => 'bol', 'BolC4t23297H' => 'bol', 'BolC8t51278H' => 'bol', 'BolC9t58050H' => 'bol', 'BolC9t58051H' => 'bol', 'BolC9t60163H' => 'bol', 'BraA02t04712Z' => 'bra', 'BraA02t05791Z' => 'bra', 'BraA03t10483Z' => 'bra', 'BraA05t19795Z' => 'bra', 'BraA05t20276Z' => 'bra', 'BraA09t40827Z' => 'bra', 'BraA10t43750Z' => 'bra', 'BraA10t43751Z' => 'bra', 'BraA10t45370Z' => 'bra', 'C02p00400' => 'bna', 'C02p12460' => 'bna', 'C03p13680' => 'bna', 'C04p10270' => 'bna', 'C04p17500' => 'bna', 'C08p37010' => 'bna', 'C09p51880' => 'bna', 'C09p51890' => 'bna', 'C09p74300' => 'bna', 'CAN.G179.26' => 'can', 'CAN.G3384.1' => 'can', 'CAN.G394.68' => 'can', 'CAN.G907.13' => 'can', 'CANSAT11G0012' => 'cansat', 'CANSAT25G1586' => 'cansat', 'CANSAT35G0735' => 'cansat', 'CANSAT54G0556' => 'cansat', 'CANSAT64G0356' => 'cansat', 'CANSAT78G2042' => 'cansat', 'CARHR125920' => 'chi', 'CARHR131910' => 'chi', 'CARHR172390' => 'chi', 'CARHR211140' => 'chi', 'CARHR285850' => 'chi', 'CARHR285860' => 'chi', 'Carub.0004s1347' => 'cru', 'Carub.0004s1960' => 'cru', 'Carub.0005s2880' => 'cru', 'Carub.0006s0107' => 'cru', 'Carub.0008s2015' => 'cru', 'Carub.0008s2016' => 'cru', 'Carub.0008s2017' => 'cru', 'Ca_01315_v3' => 'car', 'Ca_05063_v3' => 'car', 'Ca_10231_v3' => 'car', 'Ca_10913_v3' => 'car', 'Ca_19156_v3' => 'car', 'Ca_23644_v3' => 'car', 'Ca_26735_v3' => 'car', 'Cc01_g13130' => 'ccan', 'Cc02_g21690' => 'ccan', 'Cc03_g03600' => 'ccan', 'Cc06_g02510' => 'ccan', 'CDE02G1265' => 'cde', 'CDE05G0415' => 'cde', 'CDE08G1082' => 'cde', 'Cfa005780' => 'cfa', 'Cfa011522' => 'cfa', 'Cfa011523' => 'cfa', 'Cfa015627' => 'cfa', 'Cfa017359' => 'cfa', 'Ciclev10005687m.g' => 'ccl', 'Ciclev10012173m.g' => 'ccl', 'Ciclev10021621m.g' => 'ccl', 'Ciclev10028968m.g' => 'ccl', 'Ciclev10029907m.g' => 'ccl', 'CiPaw.01G164800' => 'cil', 'CiPaw.07G083700' => 'cil', 'CiPaw.07G127000' => 'cil', 'CiPaw.07G136900' => 'cil', 'CiPaw.08G081700' => 'cil', 'CiPaw.09G194600' => 'cil', 'CiPaw.10G146500' => 'cil', 'CiPaw.13G091500' => 'cil', 'CiPaw.13G091600' => 'cil', 'ClCG00G003390' => 'cla', 'ClCG01G007220' => 'cla', 'ClCG03G001370' => 'cla', 'ClCG04G008100' => 'cla', 'ClCG06G006110' => 'cla', 'ClCG06G006130' => 'cla', 'ClCG10G021210' => 'cla', 'COL.COLO4_07648' => 'col', 'COL.COLO4_07650' => 'col', 'COL.COLO4_07651' => 'col', 'COL.COLO4_14780' => 'col', 'COL.COLO4_18546' => 'col', 'COL.COLO4_18547' => 'col', 'COL.COLO4_23103' => 'col', 'COL.COLO4_30419' => 'col', 'COL.COLO4_34232' => 'col', 'Cpa.g.sc169.20' => 'cpa', 'Cpa.g.sc57.45' => 'cpa', 'Cpa.g.sc58.124' => 'cpa', 'Cpa.g.sc58.125' => 'cpa', 'Cpa.g.sc81.118' => 'cpa', 'Cpa.g.sc81.119' => 'cpa', 'Cre12.g524700' => 'cre', 'CsaV3_1G034430' => 'csa', 'CsaV3_1G034440' => 'csa', 'CsaV3_1G034450' => 'csa', 'CsaV3_3G034830' => 'csa', 'CsaV3_4G025090' => 'csa', 'CsaV3_5G018660' => 'csa', 'CsaV3_6G038160' => 'csa', 'CSS0003447' => 'camsi', 'CSS0017840' => 'camsi', 'CSS0019260' => 'camsi', 'CSS0040375' => 'camsi', 'CSS0042533' => 'camsi', 'DCAR_005960' => 'dca', 'DCAR_012104' => 'dca', 'DCAR_012105' => 'dca', 'DCAR_012293' => 'dca', 'DCAR_015632' => 'dca', 'DCAR_024602' => 'dca', 'DCAR_028752' => 'dca', 'Dinv06261' => 'din', 'Dinv13982' => 'din', 'Dinv17029' => 'din', 'Dinv18463' => 'din', 'Dinv33181' => 'din', 'Dinv35585' => 'din', 'Dinv37161' => 'din', 'Dinv42977' => 'din', 'Dinv43122' => 'din', 'Dinv44517' => 'din', 'Duzib093G0256' => 'dzi', 'Duzib106G1254' => 'dzi', 'Duzib128G1789' => 'dzi', 'Duzib133G0633' => 'dzi', 'Duzib138G0510' => 'dzi', 'Duzib150G1084' => 'dzi', 'Duzib168G0488' => 'dzi', 'Duzib168G1523' => 'dzi', 'Duzib170G0133' => 'dzi', 'ECA234G1433' => 'eca', 'ECA236G1432' => 'eca', 'ECA236G2256' => 'eca', 'ECA236G2365' => 'eca', 'ECA236G4830' => 'eca', 'ECA248G1505' => 'eca', 'EL10Ac3g06431' => 'bvu', 'EL10Ac5g12577' => 'bvu', 'EL10Ac6g13533' => 'bvu', 'EL10Ac7g16045' => 'bvu', 'Eucgr.A01281' => 'egr', 'Eucgr.B02326' => 'egr', 'Eucgr.H03532' => 'egr', 'Eucgr.K00553' => 'egr', 'Eucgr.K03116' => 'egr', 'FAN02G3963' => 'fan', 'FAN05G0438' => 'fan', 'FAN09G2434' => 'fan', 'FAN12G3984' => 'fan', 'FAN14G0798' => 'fan', 'FAN17G0652' => 'fan', 'FAN19G1988' => 'fan', 'FAN22G0632' => 'fan', 'FAN23G0387' => 'fan', 'FAN26G1323' => 'fan', 'FAN28G0666' => 'fan', 'FvH4_1g26080' => 'fve', 'FvH4_3g36780' => 'fve', 'FvH4_4g15270' => 'fve', 'FvH4_6g13490' => 'fve', 'Glyma.01G098700' => 'gma', 'Glyma.03G065900' => 'gma', 'Glyma.03G073754' => 'gma', 'Glyma.03G073758' => 'gma', 'Glyma.03G083200' => 'gma', 'Glyma.03G225500' => 'gma', 'Glyma.05G037766' => 'gma', 'Glyma.07G133500' => 'gma', 'Glyma.10G139400' => 'gma', 'Glyma.10G248900' => 'gma', 'Glyma.11G137800' => 'gma', 'Glyma.12G061300' => 'gma', 'Glyma.13G337900' => 'gma', 'Glyma.15G036600' => 'gma', 'Glyma.18G182800' => 'gma', 'Glyma.19G222500' => 'gma', 'Glyma.20G144800' => 'gma', 'Gohir.A01G222000' => 'ghi', 'Gohir.A03G044000' => 'ghi', 'Gohir.A03G044100' => 'ghi', 'Gohir.A04G083100' => 'ghi', 'Gohir.A07G127200' => 'ghi', 'Gohir.A07G132400' => 'ghi', 'Gohir.A08G000700' => 'ghi', 'Gohir.A11G327300' => 'ghi', 'Gohir.D01G211500' => 'ghi', 'Gohir.D03G123400' => 'ghi', 'Gohir.D03G123500' => 'ghi', 'Gohir.D04G121800' => 'ghi', 'Gohir.D07G131500' => 'ghi', 'Gohir.D07G136600' => 'ghi', 'Gohir.D08G011600' => 'ghi', 'Gohir.D11G346200' => 'ghi', 'Gorai.001G142800' => 'gra', 'Gorai.001G148700' => 'gra', 'Gorai.002G257300' => 'gra', 'Gorai.003G130000' => 'gra', 'Gorai.003G130100' => 'gra', 'Gorai.004G005300' => 'gra', 'Gorai.007G376500' => 'gra', 'Gorai.012G104700' => 'gra', 'GSVIVG01017946001' => 'vvi', 'GSVIVG01024928001' => 'vvi', 'GSVIVG01028227001' => 'vvi', 'GSVIVG01034151001' => 'vvi', 'HanXRQChr05g0135031' => 'han', 'HanXRQChr05g0135041' => 'han', 'HanXRQChr05g0140021' => 'han', 'HanXRQChr06g0178981' => 'han', 'HanXRQChr07g0188251' => 'han', 'HanXRQChr08g0235311' => 'han', 'HanXRQChr09g0271011' => 'han', 'HanXRQChr10g0293321' => 'han', 'HanXRQChr13g0388171' => 'han', 'Haze_00916' => 'cav', 'Haze_05063' => 'cav', 'Haze_20814' => 'cav', 'Haze_24128' => 'cav', 'Hma1.2p1_0745F.1_g212010' => 'hma', 'Hma1.2p1_0757F.1_g213260' => 'hma', 'Hma1.2p1_0936F.1_g238840' => 'hma', 'Hma1.2p1_1735F.1_g299890' => 'hma', 'Hma1.2p1_1861F.1_g305685' => 'hma', 'HPP92_003397' => 'vpl', 'HPP92_012597' => 'vpl', 'HPP92_015520' => 'vpl', 'HPP92_015539' => 'vpl', 'HPP92_020373' => 'vpl', 'Hund04938' => 'sun', 'Hund10677' => 'sun', 'Hund11033' => 'sun', 'Hund12155' => 'sun', 'Lalb_Chr01g0022551' => 'lal', 'Lalb_Chr03g0042341' => 'lal', 'Lalb_Chr07g0192931' => 'lal', 'Lalb_Chr12g0209551' => 'lal', 'Lalb_Chr19g0125251' => 'lal', 'Lalb_Chr19g0137891' => 'lal', 'Lalb_Chr21g0304641' => 'lal', 'Lalb_Chr21g0309881' => 'lal', 'Lj1A5T12' => 'lonja', 'Lj1C148G10' => 'lonja', 'Lj2A93T83' => 'lonja', 'Lj3A738G68' => 'lonja', 'Lj3C966T1' => 'lonja', 'Lj3g0018958' => 'lja', 'Lj3g0021831' => 'lja', 'Lj3g0025443' => 'lja', 'Lj4g0026809' => 'lja', 'Lj5g0012558' => 'lja', 'Lj5g0021586' => 'lja', 'Lsat_1_v5_gn_5_156840' => 'lsa', 'Lsat_1_v5_gn_8_73460' => 'lsa', 'Lsat_1_v5_gn_8_73481' => 'lsa', 'Lsat_1_v5_gn_9_31601' => 'lsa', 'Lsat_1_v5_gn_9_77320' => 'lsa', 'Manes.01G171300' => 'mes', 'Manes.01G171400' => 'mes', 'Manes.01G236100' => 'mes', 'Manes.02G130500' => 'mes', 'Manes.02G130600' => 'mes', 'Manes.03G180200' => 'mes', 'Manes.05G007000' => 'mes', 'Manes.08G084400' => 'mes', 'Manes.09G092600' => 'mes', 'Manes.15G027900' => 'mes', 'MBI04_g40948_MAGBIO' => 'mbi', 'MBI14_g12123_MAGBIO' => 'mbi', 'MBI18_g28915_MAGBIO' => 'mbi', 'MCO09G053' => 'mco', 'MCO11G782' => 'mco', 'MCO15G215' => 'mco', 'MD03G1088500' => 'mdo', 'MD03G1088600' => 'mdo', 'MD04G1130800' => 'mdo', 'MD09G1291700' => 'mdo', 'MD11G1097500' => 'mdo', 'MD11G1097600' => 'mdo', 'MD12G1143900' => 'mdo', 'MD13G1191400' => 'mdo', 'MD16G1191500' => 'mdo', 'Medtr1g085570' => 'mtr', 'Medtr1g104610' => 'mtr', 'Medtr2g097520' => 'mtr', 'Medtr4g021800' => 'mtr', 'Medtr4g021825' => 'mtr', 'Medtr4g064270' => 'mtr', 'Medtr4g064380' => 'mtr', 'Medtr7g062150' => 'mtr', 'MELO3C003138.2' => 'cme', 'MELO3C005187.2' => 'cme', 'MELO3C009252.2' => 'cme', 'MELO3C014481.2' => 'cme', 'MELO3C020616.2' => 'cme', 'MELO3C020617.2' => 'cme', 'MELO3C020618.2' => 'cme', 'Migut.G00328' => 'egut', 'Migut.J00320' => 'egut', 'Migut.L01000' => 'egut', 'Migut.L01953' => 'egut', 'MSTRG.10253' => 'ama', 'MSTRG.19077' => 'ama', 'MSTRG.26780' => 'ama', 'MSTRG.4023' => 'ama', 'MSTRG.5655' => 'ama', 'MSTRG.9992' => 'ama', 'Nitab4.5_0000043g0310' => 'nta', 'Nitab4.5_0000463g0080' => 'nta', 'Nitab4.5_0000705g0170' => 'nta', 'Nitab4.5_0001326g0060' => 'nta', 'Nitab4.5_0001628g0030' => 'nta', 'Nitab4.5_0002103g0110' => 'nta', 'Nitab4.5_0002946g0030' => 'nta', 'Nitab4.5_0004639g0030' => 'nta', 'Nn2g11149' => 'nnu', 'Nn2g13389' => 'nnu', 'Nn4g25326' => 'nnu', 'Nn4g26290' => 'nnu', 'Nn5g29865' => 'nnu', 'Oeu004163.1' => 'oeu', 'Oeu006901.1' => 'oeu', 'Oeu010096.1' => 'oeu', 'Oeu024340.1' => 'oeu', 'Oeu048369.1' => 'oeu', 'Os01g0973000' => 'osa', 'Os03g0273800' => 'osa', 'Os03g0701200' => 'osa', 'Os03g0834050' => 'osa', 'Os07g0634400' => 'osa', 'Peaxi162Scf00092g01414' => 'pax', 'Peaxi162Scf00165g00818' => 'pax', 'Peaxi162Scf00309g00516' => 'pax', 'Peaxi162Scf00774g00218' => 'pax', 'PGR004G1824' => 'pgr', 'PGR004G2606' => 'pgr', 'PGR031G2716' => 'pgr', 'PGR102G2460' => 'pgr', 'PGR142G2599' => 'pgr', 'PGSC0003DMG400000843' => 'stu', 'PGSC0003DMG400008829' => 'stu', 'PGSC0003DMG400030418' => 'stu', 'PGSC0003DMG400031834' => 'stu', 'PGSC0003DMG401028300' => 'stu', 'PGSC0003DMG402028300' => 'stu', 'Phvul.001G219300' => 'pvu', 'Phvul.007G056000' => 'pvu', 'Phvul.007G208000' => 'pvu', 'Phvul.008G119500' => 'pvu', 'Phvul.010G011200' => 'pvu', 'Phvul.010G014800' => 'pvu', 'Phvul.011G062900' => 'pvu', 'Phvul.L007043' => 'pvu', 'Potri.001G242300' => 'ptr', 'Potri.002G185300' => 'ptr', 'Potri.006G086900' => 'ptr', 'Potri.008G151700' => 'ptr', 'Potri.009G033500' => 'ptr', 'Potri.010G089300' => 'ptr', 'Potri.014G110800' => 'ptr', 'Pp3c27_8130' => 'ppa', 'Pp3c6_27410' => 'ppa', 'PRCOL_00001659' => 'pco', 'PRCOL_00001927' => 'pco', 'PRCOL_00003649' => 'pco', 'Prupe.1G011600' => 'ppe', 'Prupe.3G000800' => 'ppe', 'Prupe.3G001100' => 'ppe', 'Prupe.6G072700' => 'ppe', 'Prupe.6G072800' => 'ppe', 'Prupe.6G257300' => 'ppe', 'Prupe.8G033000' => 'ppe', 'Psat0s2633g0080' => 'psa', 'Psat0s3396g0080' => 'psa', 'Psat0s3396g0200' => 'psa', 'Psat3g139080' => 'psa', 'Psat5g285080' => 'psa', 'Psat6g157760' => 'psa', 'Psat6g208440' => 'psa', 'Psat7g215320' => 'psa', 'Psat7g215400' => 'psa', 'Psat7g235600' => 'psa', 'Psat7g235760' => 'psa', 'PSO063G4603' => 'pso', 'PSO210G0182' => 'pso', 'PSO210G0196' => 'pso', 'PSO339G0394' => 'pso', 'PSO339G4127' => 'pso', 'PSO513G0064' => 'pso', 'PSO761G0079' => 'pso', 'QL01p031003' => 'qlo', 'QL01p031078' => 'qlo', 'QL06p003004' => 'qlo', 'QL07p048731' => 'qlo', 'QL09p037427' => 'qlo', 'RcHm_v2.0_Chr3g0466361' => 'rch', 'RcHm_v2.0_Chr3g0485571' => 'rch', 'RcHm_v2.0_Chr4g0416551' => 'rch', 'RcHm_v2.0_Chr5g0065831' => 'rch', 'Rhsim01G0230500' => 'rsi', 'Rhsim05G0194000' => 'rsi', 'Rhsim08G0250400' => 'rsi', 'Sabra02G0131000' => 'sbr', 'Sabra06G0066300' => 'sbr', 'Sabra08G0115500' => 'sbr', 'Sabra09G0023900' => 'sbr', 'Sabra10G0054000' => 'sbr', 'Sabra14G0081500' => 'sbr', 'Sabra16G0147100' => 'sbr', 'SalBow2G2957' => 'sbo', 'SalBow4G3320' => 'sbo', 'SalBow8G1894' => 'sbo', 'Sc07g0007950' => 'sci', 'Sc12g0001360' => 'sci', 'Sc13g0004330' => 'sci', 'Sc20g0005010' => 'sci', 'Sed0000361' => 'sed', 'Sed0001706' => 'sed', 'Sed0002422' => 'sed', 'Sed0004029' => 'sed', 'Sed0004602' => 'sed', 'Sed0004943' => 'sed', 'Sed0008646' => 'sed', 'Sed0023313' => 'sed', 'Sed0024843' => 'sed', 'SEGI_00081' => 'sgi', 'SEGI_00947' => 'sgi', 'SEGI_04046' => 'sgi', 'SEGI_06880' => 'sgi', 'SEGI_09736' => 'sgi', 'SEGI_12741' => 'sgi', 'SEGI_14530' => 'sgi', 'SEGI_20705' => 'sgi', 'SEGI_26088' => 'sgi', 'SEGI_28323' => 'sgi', 'SEGI_33343' => 'sgi', 'SGA_v2.0_scaffold126G33775' => 'sas', 'SGA_v2.0_scaffold2G01337' => 'sas', 'SGA_v2.0_scaffold38G15006' => 'sas', 'SGA_v2.0_scaffold39G15264' => 'sas', 'SGA_v2.0_scaffold453G51880' => 'sas', 'SHI12696' => 'shi', 'SMO367G1096' => 'smo', 'Solyc01g068630.3' => 'sly', 'Solyc05g011880.3' => 'sly', 'Solyc06g076300.3' => 'sly', 'Solyc09g010940.4' => 'sly', 'Solyc09g075890.3' => 'sly', 'Sopen01g030560' => 'spe', 'Sopen05g006630' => 'spe', 'Sopen06g032720' => 'spe', 'Sopen09g005660' => 'spe', 'Sopen09g030690' => 'spe', 'Sp4g14540' => 'spa', 'Sp4g20030' => 'spa', 'Sp5g01320' => 'spa', 'Sp6g21170' => 'spa', 'Sp6g21180' => 'spa', 'Sp6g21190' => 'spa', 'Sp6g40220' => 'spa', 'TAR362G0122' => 'tar', 'TAR362G1338' => 'tar', 'TAR369G0590' => 'tar', 'TAR371G0824' => 'tar', 'TAR622G1429' => 'tar', 'TAR623G0734' => 'tar', 'TAR625G0441' => 'tar', 'TAR629G0976' => 'tar', 'TAR633G1195' => 'tar', 'TAR636G2660' => 'tar', 'THA.LOC104799440' => 'tha', 'THA.LOC104800966' => 'tha', 'THA.LOC104806559' => 'tha', 'THA.LOC104810765' => 'tha', 'THA.LOC104816266' => 'tha', 'THA.LOC104817419' => 'tha', 'THA.LOC104827021' => 'tha', 'Thecc.01G327400' => 'tca', 'Thecc.04G229200' => 'tca', 'Thecc.05G037400' => 'tca', 'Thecc.09G318600' => 'tca', 'Thecc.09G318700' => 'tca', 'Thhalv10006238m.g' => 'esa', 'Thhalv10014321m.g' => 'esa', 'Thhalv10014335m.g' => 'esa', 'Thhalv10015826m.g' => 'esa', 'Thhalv10017107m.g' => 'esa', 'Thhalv10017180m.g' => 'esa', 'Thhalv10029339m.g' => 'esa', 'TPR.G1699' => 'tpr', 'TPR.G23609' => 'tpr', 'TPR.G3081' => 'tpr', 'TPR.G40397' => 'tpr', 'TPR.G5522' => 'tpr', 'TPR.G5618' => 'tpr', 'TPR.G5626' => 'tpr', 'TWI09G1632' => 'twi', 'TWI23G1230' => 'twi', 'TWI53G1064' => 'twi', 'TWI59G0751' => 'twi', 'TWI74G0947' => 'twi', 'TWI77G0337' => 'twi', 'TWI79G1254' => 'twi', 'unitig_0.g2341' => 'ugi', 'unitig_26.g10006' => 'ugi', 'unitig_26.g10008' => 'ugi', 'unitig_26.g9192' => 'ugi', 'vmacro14547' => 'vma', 'vmacro15333' => 'vma', 'vmacro18743' => 'vma', 'vmacro20166' => 'vma', 'VMungo0331G0523' => 'vmu', 'VMungo0331G1202' => 'vmu', 'VMungo0720G1228' => 'vmu', 'VMungo0720G1514' => 'vmu', 'VMungo1080G0169' => 'vmu', 'VMungo1127G1475' => 'vmu', 'VMungo1383G1208' => 'vmu', 'VMungo1383G1698' => 'vmu', 'Zm00001eb012270' => 'zma', 'Zm00001eb054100' => 'zma', 'Zm00001eb063350' => 'zma', 'Zm00001eb328560' => 'zma', 'Zm00001eb342820' => 'zma', 'Zm00001eb362210' => 'zma', 'Zm00001eb397730' => 'zma', 'Zm00001eb399750' => 'zma' ) $gf_id = 'HOM05D000959' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000959' ) $data_identifier = 'HOM05D000959' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 5, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 5, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 10, 'mbi' => (int) 3, 'mco' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 2, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 3, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 11, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399750' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000959', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '622', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p07100' => 'bna', 'A03p11720' => 'bna', 'A05p08300' => 'bna', 'A05p13380' => 'bna', 'A09p54130' => 'bna', 'A10p16690' => 'bna', 'A10p16700' => 'bna', 'A10p33390' => 'bna', 'Aa31LG10G16020' => 'aar', 'Aa31LG1G11810' => 'aar', 'Aa31LG1G11830' => 'aar', 'Aa31LG1G22510' => 'aar', 'Aa31LG5G4890' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5793' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2310' => 'aag', 'Actinidia08499' => 'ach', 'Actinidia11262' => 'ach', 'Actinidia23926' => 'ach', 'Actinidia34420' => 'ach', 'Actinidia36970' => 'ach', 'Ah.02g111220' => 'amhyb', 'Ah.15g097750' => 'amhyb', 'AL4G27500' => 'aly', 'AL6G11470' => 'aly', 'AL8G35950' => 'aly', 'AL8G35960' => 'aly', 'AL8G35970' => 'aly', 'Aqoxy1G00912' => 'aox', 'Aqoxy2G02253' => 'aox', 'Aqoxy2G02411' => 'aox', 'Aqoxy5G00485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BZ66YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K8ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM4FUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6BF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HFV7XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25JBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0YNNV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MAKK6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P70IT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP2Z6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V61LZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YWP64R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3S9AI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7PGHH' => 'arhy', 'AT2G32150' => 'ath', 'AT3G62040' => 'ath', 'AT5G02230' => 'ath', 'AT5G59480' => 'ath', 'AT5G59490' => 'ath', 'ATR0332G060' => 'atr', 'ATR0559G190' => 'atr', 'ATR0693G294' => 'atr', 'Atru.chr3.3975' => 'acertr', 'Atru.chr3.3976' => 'acertr', 'Atru.chr3.3977' => 'acertr', 'Atru.chr4.2498' => 'acertr', 'Atru.chr5.838' => 'acertr', 'Atru.chr8.1990' => 'acertr', 'Atru.chr8.1991' => 'acertr', 'Atru.chr8.1992' => 'acertr', 'AUR62001759' => 'cqu', 'AUR62009545' => 'cqu', 'AUR62010474' => 'cqu', 'AUR62025820' => 'cqu', 'AUR62030422' => 'cqu', 'AUR62033605' => 'cqu', 'AUR62038615' => 'cqu', 'AUR62041347' => 'cqu', 'BcaB01g04574' => 'bca', 'BcaB02g09263' => 'bca', 'BcaB02g10453' => 'bca', 'BcaB05g22513' => 'bca', 'BcaB08g36253' => 'bca', 'BcaB08g36254' => 'bca', 'BcaC01g06519' => 'bca', 'BcaC02g11889' => 'bca', 'BcaC03g14010' => 'bca', 'BcaC03g18439' => 'bca', 'BcaC04g19765' => 'bca', 'BcaC09g48432' => 'bca', 'BcaNung07302' => 'bca', 'BolC2t06040H' => 'bol', 'BolC2t07346H' => 'bol', 'BolC3t13817H' => 'bol', 'BolC4t22625H' => 'bol', 'BolC4t23297H' => 'bol', 'BolC8t51278H' => 'bol', 'BolC9t58050H' => 'bol', 'BolC9t58051H' => 'bol', 'BolC9t60163H' => 'bol', 'BraA02t04712Z' => 'bra', 'BraA02t05791Z' => 'bra', 'BraA03t10483Z' => 'bra', 'BraA05t19795Z' => 'bra', 'BraA05t20276Z' => 'bra', 'BraA09t40827Z' => 'bra', 'BraA10t43750Z' => 'bra', 'BraA10t43751Z' => 'bra', 'BraA10t45370Z' => 'bra', 'C02p00400' => 'bna', 'C02p12460' => 'bna', 'C03p13680' => 'bna', 'C04p10270' => 'bna', 'C04p17500' => 'bna', 'C08p37010' => 'bna', 'C09p51880' => 'bna', 'C09p51890' => 'bna', 'C09p74300' => 'bna', 'CAN.G179.26' => 'can', 'CAN.G3384.1' => 'can', 'CAN.G394.68' => 'can', 'CAN.G907.13' => 'can', 'CANSAT11G0012' => 'cansat', 'CANSAT25G1586' => 'cansat', 'CANSAT35G0735' => 'cansat', 'CANSAT54G0556' => 'cansat', 'CANSAT64G0356' => 'cansat', 'CANSAT78G2042' => 'cansat', 'CARHR125920' => 'chi', 'CARHR131910' => 'chi', 'CARHR172390' => 'chi', 'CARHR211140' => 'chi', 'CARHR285850' => 'chi', 'CARHR285860' => 'chi', 'Carub.0004s1347' => 'cru', 'Carub.0004s1960' => 'cru', 'Carub.0005s2880' => 'cru', 'Carub.0006s0107' => 'cru', 'Carub.0008s2015' => 'cru', 'Carub.0008s2016' => 'cru', 'Carub.0008s2017' => 'cru', 'Ca_01315_v3' => 'car', 'Ca_05063_v3' => 'car', 'Ca_10231_v3' => 'car', 'Ca_10913_v3' => 'car', 'Ca_19156_v3' => 'car', 'Ca_23644_v3' => 'car', 'Ca_26735_v3' => 'car', 'Cc01_g13130' => 'ccan', 'Cc02_g21690' => 'ccan', 'Cc03_g03600' => 'ccan', 'Cc06_g02510' => 'ccan', 'CDE02G1265' => 'cde', 'CDE05G0415' => 'cde', 'CDE08G1082' => 'cde', 'Cfa005780' => 'cfa', 'Cfa011522' => 'cfa', 'Cfa011523' => 'cfa', 'Cfa015627' => 'cfa', 'Cfa017359' => 'cfa', 'Ciclev10005687m.g' => 'ccl', 'Ciclev10012173m.g' => 'ccl', 'Ciclev10021621m.g' => 'ccl', 'Ciclev10028968m.g' => 'ccl', 'Ciclev10029907m.g' => 'ccl', 'CiPaw.01G164800' => 'cil', 'CiPaw.07G083700' => 'cil', 'CiPaw.07G127000' => 'cil', 'CiPaw.07G136900' => 'cil', 'CiPaw.08G081700' => 'cil', 'CiPaw.09G194600' => 'cil', 'CiPaw.10G146500' => 'cil', 'CiPaw.13G091500' => 'cil', 'CiPaw.13G091600' => 'cil', 'ClCG00G003390' => 'cla', 'ClCG01G007220' => 'cla', 'ClCG03G001370' => 'cla', 'ClCG04G008100' => 'cla', 'ClCG06G006110' => 'cla', 'ClCG06G006130' => 'cla', 'ClCG10G021210' => 'cla', 'COL.COLO4_07648' => 'col', 'COL.COLO4_07650' => 'col', 'COL.COLO4_07651' => 'col', 'COL.COLO4_14780' => 'col', 'COL.COLO4_18546' => 'col', 'COL.COLO4_18547' => 'col', 'COL.COLO4_23103' => 'col', 'COL.COLO4_30419' => 'col', 'COL.COLO4_34232' => 'col', 'Cpa.g.sc169.20' => 'cpa', 'Cpa.g.sc57.45' => 'cpa', 'Cpa.g.sc58.124' => 'cpa', 'Cpa.g.sc58.125' => 'cpa', 'Cpa.g.sc81.118' => 'cpa', 'Cpa.g.sc81.119' => 'cpa', 'Cre12.g524700' => 'cre', 'CsaV3_1G034430' => 'csa', 'CsaV3_1G034440' => 'csa', 'CsaV3_1G034450' => 'csa', 'CsaV3_3G034830' => 'csa', 'CsaV3_4G025090' => 'csa', 'CsaV3_5G018660' => 'csa', 'CsaV3_6G038160' => 'csa', 'CSS0003447' => 'camsi', 'CSS0017840' => 'camsi', 'CSS0019260' => 'camsi', 'CSS0040375' => 'camsi', 'CSS0042533' => 'camsi', 'DCAR_005960' => 'dca', 'DCAR_012104' => 'dca', 'DCAR_012105' => 'dca', 'DCAR_012293' => 'dca', 'DCAR_015632' => 'dca', 'DCAR_024602' => 'dca', 'DCAR_028752' => 'dca', 'Dinv06261' => 'din', 'Dinv13982' => 'din', 'Dinv17029' => 'din', 'Dinv18463' => 'din', 'Dinv33181' => 'din', 'Dinv35585' => 'din', 'Dinv37161' => 'din', 'Dinv42977' => 'din', 'Dinv43122' => 'din', 'Dinv44517' => 'din', 'Duzib093G0256' => 'dzi', 'Duzib106G1254' => 'dzi', 'Duzib128G1789' => 'dzi', 'Duzib133G0633' => 'dzi', 'Duzib138G0510' => 'dzi', 'Duzib150G1084' => 'dzi', 'Duzib168G0488' => 'dzi', 'Duzib168G1523' => 'dzi', 'Duzib170G0133' => 'dzi', 'ECA234G1433' => 'eca', 'ECA236G1432' => 'eca', 'ECA236G2256' => 'eca', 'ECA236G2365' => 'eca', 'ECA236G4830' => 'eca', 'ECA248G1505' => 'eca', 'EL10Ac3g06431' => 'bvu', 'EL10Ac5g12577' => 'bvu', 'EL10Ac6g13533' => 'bvu', 'EL10Ac7g16045' => 'bvu', 'Eucgr.A01281' => 'egr', 'Eucgr.B02326' => 'egr', 'Eucgr.H03532' => 'egr', 'Eucgr.K00553' => 'egr', 'Eucgr.K03116' => 'egr', 'FAN02G3963' => 'fan', 'FAN05G0438' => 'fan', 'FAN09G2434' => 'fan', 'FAN12G3984' => 'fan', 'FAN14G0798' => 'fan', 'FAN17G0652' => 'fan', 'FAN19G1988' => 'fan', 'FAN22G0632' => 'fan', 'FAN23G0387' => 'fan', 'FAN26G1323' => 'fan', 'FAN28G0666' => 'fan', 'FvH4_1g26080' => 'fve', 'FvH4_3g36780' => 'fve', 'FvH4_4g15270' => 'fve', 'FvH4_6g13490' => 'fve', 'Glyma.01G098700' => 'gma', 'Glyma.03G065900' => 'gma', 'Glyma.03G073754' => 'gma', 'Glyma.03G073758' => 'gma', 'Glyma.03G083200' => 'gma', 'Glyma.03G225500' => 'gma', 'Glyma.05G037766' => 'gma', 'Glyma.07G133500' => 'gma', 'Glyma.10G139400' => 'gma', 'Glyma.10G248900' => 'gma', 'Glyma.11G137800' => 'gma', 'Glyma.12G061300' => 'gma', 'Glyma.13G337900' => 'gma', 'Glyma.15G036600' => 'gma', 'Glyma.18G182800' => 'gma', 'Glyma.19G222500' => 'gma', 'Glyma.20G144800' => 'gma', 'Gohir.A01G222000' => 'ghi', 'Gohir.A03G044000' => 'ghi', 'Gohir.A03G044100' => 'ghi', 'Gohir.A04G083100' => 'ghi', 'Gohir.A07G127200' => 'ghi', 'Gohir.A07G132400' => 'ghi', 'Gohir.A08G000700' => 'ghi', 'Gohir.A11G327300' => 'ghi', 'Gohir.D01G211500' => 'ghi', 'Gohir.D03G123400' => 'ghi', 'Gohir.D03G123500' => 'ghi', 'Gohir.D04G121800' => 'ghi', 'Gohir.D07G131500' => 'ghi', 'Gohir.D07G136600' => 'ghi', 'Gohir.D08G011600' => 'ghi', 'Gohir.D11G346200' => 'ghi', 'Gorai.001G142800' => 'gra', 'Gorai.001G148700' => 'gra', 'Gorai.002G257300' => 'gra', 'Gorai.003G130000' => 'gra', 'Gorai.003G130100' => 'gra', 'Gorai.004G005300' => 'gra', 'Gorai.007G376500' => 'gra', 'Gorai.012G104700' => 'gra', 'GSVIVG01017946001' => 'vvi', 'GSVIVG01024928001' => 'vvi', 'GSVIVG01028227001' => 'vvi', 'GSVIVG01034151001' => 'vvi', 'HanXRQChr05g0135031' => 'han', 'HanXRQChr05g0135041' => 'han', 'HanXRQChr05g0140021' => 'han', 'HanXRQChr06g0178981' => 'han', 'HanXRQChr07g0188251' => 'han', 'HanXRQChr08g0235311' => 'han', 'HanXRQChr09g0271011' => 'han', 'HanXRQChr10g0293321' => 'han', 'HanXRQChr13g0388171' => 'han', 'Haze_00916' => 'cav', 'Haze_05063' => 'cav', 'Haze_20814' => 'cav', 'Haze_24128' => 'cav', 'Hma1.2p1_0745F.1_g212010' => 'hma', 'Hma1.2p1_0757F.1_g213260' => 'hma', 'Hma1.2p1_0936F.1_g238840' => 'hma', 'Hma1.2p1_1735F.1_g299890' => 'hma', 'Hma1.2p1_1861F.1_g305685' => 'hma', 'HPP92_003397' => 'vpl', 'HPP92_012597' => 'vpl', 'HPP92_015520' => 'vpl', 'HPP92_015539' => 'vpl', 'HPP92_020373' => 'vpl', 'Hund04938' => 'sun', 'Hund10677' => 'sun', 'Hund11033' => 'sun', 'Hund12155' => 'sun', 'Lalb_Chr01g0022551' => 'lal', 'Lalb_Chr03g0042341' => 'lal', 'Lalb_Chr07g0192931' => 'lal', 'Lalb_Chr12g0209551' => 'lal', 'Lalb_Chr19g0125251' => 'lal', 'Lalb_Chr19g0137891' => 'lal', 'Lalb_Chr21g0304641' => 'lal', 'Lalb_Chr21g0309881' => 'lal', 'Lj1A5T12' => 'lonja', 'Lj1C148G10' => 'lonja', 'Lj2A93T83' => 'lonja', 'Lj3A738G68' => 'lonja', 'Lj3C966T1' => 'lonja', 'Lj3g0018958' => 'lja', 'Lj3g0021831' => 'lja', 'Lj3g0025443' => 'lja', 'Lj4g0026809' => 'lja', 'Lj5g0012558' => 'lja', 'Lj5g0021586' => 'lja', 'Lsat_1_v5_gn_5_156840' => 'lsa', 'Lsat_1_v5_gn_8_73460' => 'lsa', 'Lsat_1_v5_gn_8_73481' => 'lsa', 'Lsat_1_v5_gn_9_31601' => 'lsa', 'Lsat_1_v5_gn_9_77320' => 'lsa', 'Manes.01G171300' => 'mes', 'Manes.01G171400' => 'mes', 'Manes.01G236100' => 'mes', 'Manes.02G130500' => 'mes', 'Manes.02G130600' => 'mes', 'Manes.03G180200' => 'mes', 'Manes.05G007000' => 'mes', 'Manes.08G084400' => 'mes', 'Manes.09G092600' => 'mes', 'Manes.15G027900' => 'mes', 'MBI04_g40948_MAGBIO' => 'mbi', 'MBI14_g12123_MAGBIO' => 'mbi', 'MBI18_g28915_MAGBIO' => 'mbi', 'MCO09G053' => 'mco', 'MCO11G782' => 'mco', 'MCO15G215' => 'mco', 'MD03G1088500' => 'mdo', 'MD03G1088600' => 'mdo', 'MD04G1130800' => 'mdo', 'MD09G1291700' => 'mdo', 'MD11G1097500' => 'mdo', 'MD11G1097600' => 'mdo', 'MD12G1143900' => 'mdo', 'MD13G1191400' => 'mdo', 'MD16G1191500' => 'mdo', 'Medtr1g085570' => 'mtr', 'Medtr1g104610' => 'mtr', 'Medtr2g097520' => 'mtr', 'Medtr4g021800' => 'mtr', 'Medtr4g021825' => 'mtr', 'Medtr4g064270' => 'mtr', 'Medtr4g064380' => 'mtr', 'Medtr7g062150' => 'mtr', 'MELO3C003138.2' => 'cme', 'MELO3C005187.2' => 'cme', 'MELO3C009252.2' => 'cme', 'MELO3C014481.2' => 'cme', 'MELO3C020616.2' => 'cme', 'MELO3C020617.2' => 'cme', 'MELO3C020618.2' => 'cme', 'Migut.G00328' => 'egut', 'Migut.J00320' => 'egut', 'Migut.L01000' => 'egut', 'Migut.L01953' => 'egut', 'MSTRG.10253' => 'ama', 'MSTRG.19077' => 'ama', 'MSTRG.26780' => 'ama', 'MSTRG.4023' => 'ama', 'MSTRG.5655' => 'ama', 'MSTRG.9992' => 'ama', 'Nitab4.5_0000043g0310' => 'nta', 'Nitab4.5_0000463g0080' => 'nta', 'Nitab4.5_0000705g0170' => 'nta', 'Nitab4.5_0001326g0060' => 'nta', 'Nitab4.5_0001628g0030' => 'nta', 'Nitab4.5_0002103g0110' => 'nta', 'Nitab4.5_0002946g0030' => 'nta', 'Nitab4.5_0004639g0030' => 'nta', 'Nn2g11149' => 'nnu', 'Nn2g13389' => 'nnu', 'Nn4g25326' => 'nnu', 'Nn4g26290' => 'nnu', 'Nn5g29865' => 'nnu', 'Oeu004163.1' => 'oeu', 'Oeu006901.1' => 'oeu', 'Oeu010096.1' => 'oeu', 'Oeu024340.1' => 'oeu', 'Oeu048369.1' => 'oeu', 'Os01g0973000' => 'osa', 'Os03g0273800' => 'osa', 'Os03g0701200' => 'osa', 'Os03g0834050' => 'osa', 'Os07g0634400' => 'osa', 'Peaxi162Scf00092g01414' => 'pax', 'Peaxi162Scf00165g00818' => 'pax', 'Peaxi162Scf00309g00516' => 'pax', 'Peaxi162Scf00774g00218' => 'pax', 'PGR004G1824' => 'pgr', 'PGR004G2606' => 'pgr', 'PGR031G2716' => 'pgr', 'PGR102G2460' => 'pgr', 'PGR142G2599' => 'pgr', 'PGSC0003DMG400000843' => 'stu', 'PGSC0003DMG400008829' => 'stu', 'PGSC0003DMG400030418' => 'stu', 'PGSC0003DMG400031834' => 'stu', 'PGSC0003DMG401028300' => 'stu', 'PGSC0003DMG402028300' => 'stu', 'Phvul.001G219300' => 'pvu', 'Phvul.007G056000' => 'pvu', 'Phvul.007G208000' => 'pvu', 'Phvul.008G119500' => 'pvu', 'Phvul.010G011200' => 'pvu', 'Phvul.010G014800' => 'pvu', 'Phvul.011G062900' => 'pvu', 'Phvul.L007043' => 'pvu', 'Potri.001G242300' => 'ptr', 'Potri.002G185300' => 'ptr', 'Potri.006G086900' => 'ptr', 'Potri.008G151700' => 'ptr', 'Potri.009G033500' => 'ptr', 'Potri.010G089300' => 'ptr', 'Potri.014G110800' => 'ptr', 'Pp3c27_8130' => 'ppa', 'Pp3c6_27410' => 'ppa', 'PRCOL_00001659' => 'pco', 'PRCOL_00001927' => 'pco', 'PRCOL_00003649' => 'pco', 'Prupe.1G011600' => 'ppe', 'Prupe.3G000800' => 'ppe', 'Prupe.3G001100' => 'ppe', 'Prupe.6G072700' => 'ppe', 'Prupe.6G072800' => 'ppe', 'Prupe.6G257300' => 'ppe', 'Prupe.8G033000' => 'ppe', 'Psat0s2633g0080' => 'psa', 'Psat0s3396g0080' => 'psa', 'Psat0s3396g0200' => 'psa', 'Psat3g139080' => 'psa', 'Psat5g285080' => 'psa', 'Psat6g157760' => 'psa', 'Psat6g208440' => 'psa', 'Psat7g215320' => 'psa', 'Psat7g215400' => 'psa', 'Psat7g235600' => 'psa', 'Psat7g235760' => 'psa', 'PSO063G4603' => 'pso', 'PSO210G0182' => 'pso', 'PSO210G0196' => 'pso', 'PSO339G0394' => 'pso', 'PSO339G4127' => 'pso', 'PSO513G0064' => 'pso', 'PSO761G0079' => 'pso', 'QL01p031003' => 'qlo', 'QL01p031078' => 'qlo', 'QL06p003004' => 'qlo', 'QL07p048731' => 'qlo', 'QL09p037427' => 'qlo', 'RcHm_v2.0_Chr3g0466361' => 'rch', 'RcHm_v2.0_Chr3g0485571' => 'rch', 'RcHm_v2.0_Chr4g0416551' => 'rch', 'RcHm_v2.0_Chr5g0065831' => 'rch', 'Rhsim01G0230500' => 'rsi', 'Rhsim05G0194000' => 'rsi', 'Rhsim08G0250400' => 'rsi', 'Sabra02G0131000' => 'sbr', 'Sabra06G0066300' => 'sbr', 'Sabra08G0115500' => 'sbr', 'Sabra09G0023900' => 'sbr', 'Sabra10G0054000' => 'sbr', 'Sabra14G0081500' => 'sbr', 'Sabra16G0147100' => 'sbr', 'SalBow2G2957' => 'sbo', 'SalBow4G3320' => 'sbo', 'SalBow8G1894' => 'sbo', 'Sc07g0007950' => 'sci', 'Sc12g0001360' => 'sci', 'Sc13g0004330' => 'sci', 'Sc20g0005010' => 'sci', 'Sed0000361' => 'sed', 'Sed0001706' => 'sed', 'Sed0002422' => 'sed', 'Sed0004029' => 'sed', 'Sed0004602' => 'sed', 'Sed0004943' => 'sed', 'Sed0008646' => 'sed', 'Sed0023313' => 'sed', 'Sed0024843' => 'sed', 'SEGI_00081' => 'sgi', 'SEGI_00947' => 'sgi', 'SEGI_04046' => 'sgi', 'SEGI_06880' => 'sgi', 'SEGI_09736' => 'sgi', 'SEGI_12741' => 'sgi', 'SEGI_14530' => 'sgi', 'SEGI_20705' => 'sgi', 'SEGI_26088' => 'sgi', 'SEGI_28323' => 'sgi', 'SEGI_33343' => 'sgi', 'SGA_v2.0_scaffold126G33775' => 'sas', 'SGA_v2.0_scaffold2G01337' => 'sas', 'SGA_v2.0_scaffold38G15006' => 'sas', 'SGA_v2.0_scaffold39G15264' => 'sas', 'SGA_v2.0_scaffold453G51880' => 'sas', 'SHI12696' => 'shi', 'SMO367G1096' => 'smo', 'Solyc01g068630.3' => 'sly', 'Solyc05g011880.3' => 'sly', 'Solyc06g076300.3' => 'sly', 'Solyc09g010940.4' => 'sly', 'Solyc09g075890.3' => 'sly', 'Sopen01g030560' => 'spe', 'Sopen05g006630' => 'spe', 'Sopen06g032720' => 'spe', 'Sopen09g005660' => 'spe', 'Sopen09g030690' => 'spe', 'Sp4g14540' => 'spa', 'Sp4g20030' => 'spa', 'Sp5g01320' => 'spa', 'Sp6g21170' => 'spa', 'Sp6g21180' => 'spa', 'Sp6g21190' => 'spa', 'Sp6g40220' => 'spa', 'TAR362G0122' => 'tar', 'TAR362G1338' => 'tar', 'TAR369G0590' => 'tar', 'TAR371G0824' => 'tar', 'TAR622G1429' => 'tar', 'TAR623G0734' => 'tar', 'TAR625G0441' => 'tar', 'TAR629G0976' => 'tar', 'TAR633G1195' => 'tar', 'TAR636G2660' => 'tar', 'THA.LOC104799440' => 'tha', 'THA.LOC104800966' => 'tha', 'THA.LOC104806559' => 'tha', 'THA.LOC104810765' => 'tha', 'THA.LOC104816266' => 'tha', 'THA.LOC104817419' => 'tha', 'THA.LOC104827021' => 'tha', 'Thecc.01G327400' => 'tca', 'Thecc.04G229200' => 'tca', 'Thecc.05G037400' => 'tca', 'Thecc.09G318600' => 'tca', 'Thecc.09G318700' => 'tca', 'Thhalv10006238m.g' => 'esa', 'Thhalv10014321m.g' => 'esa', 'Thhalv10014335m.g' => 'esa', 'Thhalv10015826m.g' => 'esa', 'Thhalv10017107m.g' => 'esa', 'Thhalv10017180m.g' => 'esa', 'Thhalv10029339m.g' => 'esa', 'TPR.G1699' => 'tpr', 'TPR.G23609' => 'tpr', 'TPR.G3081' => 'tpr', 'TPR.G40397' => 'tpr', 'TPR.G5522' => 'tpr', 'TPR.G5618' => 'tpr', 'TPR.G5626' => 'tpr', 'TWI09G1632' => 'twi', 'TWI23G1230' => 'twi', 'TWI53G1064' => 'twi', 'TWI59G0751' => 'twi', 'TWI74G0947' => 'twi', 'TWI77G0337' => 'twi', 'TWI79G1254' => 'twi', 'unitig_0.g2341' => 'ugi', 'unitig_26.g10006' => 'ugi', 'unitig_26.g10008' => 'ugi', 'unitig_26.g9192' => 'ugi', 'vmacro14547' => 'vma', 'vmacro15333' => 'vma', 'vmacro18743' => 'vma', 'vmacro20166' => 'vma', 'VMungo0331G0523' => 'vmu', 'VMungo0331G1202' => 'vmu', 'VMungo0720G1228' => 'vmu', 'VMungo0720G1514' => 'vmu', 'VMungo1080G0169' => 'vmu', 'VMungo1127G1475' => 'vmu', 'VMungo1383G1208' => 'vmu', 'VMungo1383G1698' => 'vmu', 'Zm00001eb012270' => 'zma', 'Zm00001eb054100' => 'zma', 'Zm00001eb063350' => 'zma', 'Zm00001eb328560' => 'zma', 'Zm00001eb342820' => 'zma', 'Zm00001eb362210' => 'zma', 'Zm00001eb397730' => 'zma', 'Zm00001eb399750' => 'zma' ), 'gf_id' => 'HOM05D000959', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000959' ), 'data_identifier' => 'HOM05D000959', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000959', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '622', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p07100' => 'bna', 'A03p11720' => 'bna', 'A05p08300' => 'bna', 'A05p13380' => 'bna', 'A09p54130' => 'bna', 'A10p16690' => 'bna', 'A10p16700' => 'bna', 'A10p33390' => 'bna', 'Aa31LG10G16020' => 'aar', 'Aa31LG1G11810' => 'aar', 'Aa31LG1G11830' => 'aar', 'Aa31LG1G22510' => 'aar', 'Aa31LG5G4890' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5793' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2310' => 'aag', 'Actinidia08499' => 'ach', 'Actinidia11262' => 'ach', 'Actinidia23926' => 'ach', 'Actinidia34420' => 'ach', 'Actinidia36970' => 'ach', 'Ah.02g111220' => 'amhyb', 'Ah.15g097750' => 'amhyb', 'AL4G27500' => 'aly', 'AL6G11470' => 'aly', 'AL8G35950' => 'aly', 'AL8G35960' => 'aly', 'AL8G35970' => 'aly', 'Aqoxy1G00912' => 'aox', 'Aqoxy2G02253' => 'aox', 'Aqoxy2G02411' => 'aox', 'Aqoxy5G00485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BZ66YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K8ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM4FUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6BF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HFV7XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25JBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0YNNV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MAKK6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P70IT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP2Z6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V61LZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YWP64R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3S9AI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7PGHH' => 'arhy', 'AT2G32150' => 'ath', 'AT3G62040' => 'ath', 'AT5G02230' => 'ath', 'AT5G59480' => 'ath', 'AT5G59490' => 'ath', 'ATR0332G060' => 'atr', 'ATR0559G190' => 'atr', 'ATR0693G294' => 'atr', 'Atru.chr3.3975' => 'acertr', 'Atru.chr3.3976' => 'acertr', 'Atru.chr3.3977' => 'acertr', 'Atru.chr4.2498' => 'acertr', 'Atru.chr5.838' => 'acertr', 'Atru.chr8.1990' => 'acertr', 'Atru.chr8.1991' => 'acertr', 'Atru.chr8.1992' => 'acertr', 'AUR62001759' => 'cqu', 'AUR62009545' => 'cqu', 'AUR62010474' => 'cqu', 'AUR62025820' => 'cqu', 'AUR62030422' => 'cqu', 'AUR62033605' => 'cqu', 'AUR62038615' => 'cqu', 'AUR62041347' => 'cqu', 'BcaB01g04574' => 'bca', 'BcaB02g09263' => 'bca', 'BcaB02g10453' => 'bca', 'BcaB05g22513' => 'bca', 'BcaB08g36253' => 'bca', 'BcaB08g36254' => 'bca', 'BcaC01g06519' => 'bca', 'BcaC02g11889' => 'bca', 'BcaC03g14010' => 'bca', 'BcaC03g18439' => 'bca', 'BcaC04g19765' => 'bca', 'BcaC09g48432' => 'bca', 'BcaNung07302' => 'bca', 'BolC2t06040H' => 'bol', 'BolC2t07346H' => 'bol', 'BolC3t13817H' => 'bol', 'BolC4t22625H' => 'bol', 'BolC4t23297H' => 'bol', 'BolC8t51278H' => 'bol', 'BolC9t58050H' => 'bol', 'BolC9t58051H' => 'bol', 'BolC9t60163H' => 'bol', 'BraA02t04712Z' => 'bra', 'BraA02t05791Z' => 'bra', 'BraA03t10483Z' => 'bra', 'BraA05t19795Z' => 'bra', 'BraA05t20276Z' => 'bra', 'BraA09t40827Z' => 'bra', 'BraA10t43750Z' => 'bra', 'BraA10t43751Z' => 'bra', 'BraA10t45370Z' => 'bra', 'C02p00400' => 'bna', 'C02p12460' => 'bna', 'C03p13680' => 'bna', 'C04p10270' => 'bna', 'C04p17500' => 'bna', 'C08p37010' => 'bna', 'C09p51880' => 'bna', 'C09p51890' => 'bna', 'C09p74300' => 'bna', 'CAN.G179.26' => 'can', 'CAN.G3384.1' => 'can', 'CAN.G394.68' => 'can', 'CAN.G907.13' => 'can', 'CANSAT11G0012' => 'cansat', 'CANSAT25G1586' => 'cansat', 'CANSAT35G0735' => 'cansat', 'CANSAT54G0556' => 'cansat', 'CANSAT64G0356' => 'cansat', 'CANSAT78G2042' => 'cansat', 'CARHR125920' => 'chi', 'CARHR131910' => 'chi', 'CARHR172390' => 'chi', 'CARHR211140' => 'chi', 'CARHR285850' => 'chi', 'CARHR285860' => 'chi', 'Carub.0004s1347' => 'cru', 'Carub.0004s1960' => 'cru', 'Carub.0005s2880' => 'cru', 'Carub.0006s0107' => 'cru', 'Carub.0008s2015' => 'cru', 'Carub.0008s2016' => 'cru', 'Carub.0008s2017' => 'cru', 'Ca_01315_v3' => 'car', 'Ca_05063_v3' => 'car', 'Ca_10231_v3' => 'car', 'Ca_10913_v3' => 'car', 'Ca_19156_v3' => 'car', 'Ca_23644_v3' => 'car', 'Ca_26735_v3' => 'car', 'Cc01_g13130' => 'ccan', 'Cc02_g21690' => 'ccan', 'Cc03_g03600' => 'ccan', 'Cc06_g02510' => 'ccan', 'CDE02G1265' => 'cde', 'CDE05G0415' => 'cde', 'CDE08G1082' => 'cde', 'Cfa005780' => 'cfa', 'Cfa011522' => 'cfa', 'Cfa011523' => 'cfa', 'Cfa015627' => 'cfa', 'Cfa017359' => 'cfa', 'Ciclev10005687m.g' => 'ccl', 'Ciclev10012173m.g' => 'ccl', 'Ciclev10021621m.g' => 'ccl', 'Ciclev10028968m.g' => 'ccl', 'Ciclev10029907m.g' => 'ccl', 'CiPaw.01G164800' => 'cil', 'CiPaw.07G083700' => 'cil', 'CiPaw.07G127000' => 'cil', 'CiPaw.07G136900' => 'cil', 'CiPaw.08G081700' => 'cil', 'CiPaw.09G194600' => 'cil', 'CiPaw.10G146500' => 'cil', 'CiPaw.13G091500' => 'cil', 'CiPaw.13G091600' => 'cil', 'ClCG00G003390' => 'cla', 'ClCG01G007220' => 'cla', 'ClCG03G001370' => 'cla', 'ClCG04G008100' => 'cla', 'ClCG06G006110' => 'cla', 'ClCG06G006130' => 'cla', 'ClCG10G021210' => 'cla', 'COL.COLO4_07648' => 'col', 'COL.COLO4_07650' => 'col', 'COL.COLO4_07651' => 'col', 'COL.COLO4_14780' => 'col', 'COL.COLO4_18546' => 'col', 'COL.COLO4_18547' => 'col', 'COL.COLO4_23103' => 'col', 'COL.COLO4_30419' => 'col', 'COL.COLO4_34232' => 'col', 'Cpa.g.sc169.20' => 'cpa', 'Cpa.g.sc57.45' => 'cpa', 'Cpa.g.sc58.124' => 'cpa', 'Cpa.g.sc58.125' => 'cpa', 'Cpa.g.sc81.118' => 'cpa', 'Cpa.g.sc81.119' => 'cpa', 'Cre12.g524700' => 'cre', 'CsaV3_1G034430' => 'csa', 'CsaV3_1G034440' => 'csa', 'CsaV3_1G034450' => 'csa', 'CsaV3_3G034830' => 'csa', 'CsaV3_4G025090' => 'csa', 'CsaV3_5G018660' => 'csa', 'CsaV3_6G038160' => 'csa', 'CSS0003447' => 'camsi', 'CSS0017840' => 'camsi', 'CSS0019260' => 'camsi', 'CSS0040375' => 'camsi', 'CSS0042533' => 'camsi', 'DCAR_005960' => 'dca', 'DCAR_012104' => 'dca', 'DCAR_012105' => 'dca', 'DCAR_012293' => 'dca', 'DCAR_015632' => 'dca', 'DCAR_024602' => 'dca', 'DCAR_028752' => 'dca', 'Dinv06261' => 'din', 'Dinv13982' => 'din', 'Dinv17029' => 'din', 'Dinv18463' => 'din', 'Dinv33181' => 'din', 'Dinv35585' => 'din', 'Dinv37161' => 'din', 'Dinv42977' => 'din', 'Dinv43122' => 'din', 'Dinv44517' => 'din', 'Duzib093G0256' => 'dzi', 'Duzib106G1254' => 'dzi', 'Duzib128G1789' => 'dzi', 'Duzib133G0633' => 'dzi', 'Duzib138G0510' => 'dzi', 'Duzib150G1084' => 'dzi', 'Duzib168G0488' => 'dzi', 'Duzib168G1523' => 'dzi', 'Duzib170G0133' => 'dzi', 'ECA234G1433' => 'eca', 'ECA236G1432' => 'eca', 'ECA236G2256' => 'eca', 'ECA236G2365' => 'eca', 'ECA236G4830' => 'eca', 'ECA248G1505' => 'eca', 'EL10Ac3g06431' => 'bvu', 'EL10Ac5g12577' => 'bvu', 'EL10Ac6g13533' => 'bvu', 'EL10Ac7g16045' => 'bvu', 'Eucgr.A01281' => 'egr', 'Eucgr.B02326' => 'egr', 'Eucgr.H03532' => 'egr', 'Eucgr.K00553' => 'egr', 'Eucgr.K03116' => 'egr', 'FAN02G3963' => 'fan', 'FAN05G0438' => 'fan', 'FAN09G2434' => 'fan', 'FAN12G3984' => 'fan', 'FAN14G0798' => 'fan', 'FAN17G0652' => 'fan', 'FAN19G1988' => 'fan', 'FAN22G0632' => 'fan', 'FAN23G0387' => 'fan', 'FAN26G1323' => 'fan', 'FAN28G0666' => 'fan', 'FvH4_1g26080' => 'fve', 'FvH4_3g36780' => 'fve', 'FvH4_4g15270' => 'fve', 'FvH4_6g13490' => 'fve', 'Glyma.01G098700' => 'gma', 'Glyma.03G065900' => 'gma', 'Glyma.03G073754' => 'gma', 'Glyma.03G073758' => 'gma', 'Glyma.03G083200' => 'gma', 'Glyma.03G225500' => 'gma', 'Glyma.05G037766' => 'gma', 'Glyma.07G133500' => 'gma', 'Glyma.10G139400' => 'gma', 'Glyma.10G248900' => 'gma', 'Glyma.11G137800' => 'gma', 'Glyma.12G061300' => 'gma', 'Glyma.13G337900' => 'gma', 'Glyma.15G036600' => 'gma', 'Glyma.18G182800' => 'gma', 'Glyma.19G222500' => 'gma', 'Glyma.20G144800' => 'gma', 'Gohir.A01G222000' => 'ghi', 'Gohir.A03G044000' => 'ghi', 'Gohir.A03G044100' => 'ghi', 'Gohir.A04G083100' => 'ghi', 'Gohir.A07G127200' => 'ghi', 'Gohir.A07G132400' => 'ghi', 'Gohir.A08G000700' => 'ghi', 'Gohir.A11G327300' => 'ghi', 'Gohir.D01G211500' => 'ghi', 'Gohir.D03G123400' => 'ghi', 'Gohir.D03G123500' => 'ghi', 'Gohir.D04G121800' => 'ghi', 'Gohir.D07G131500' => 'ghi', 'Gohir.D07G136600' => 'ghi', 'Gohir.D08G011600' => 'ghi', 'Gohir.D11G346200' => 'ghi', 'Gorai.001G142800' => 'gra', 'Gorai.001G148700' => 'gra', 'Gorai.002G257300' => 'gra', 'Gorai.003G130000' => 'gra', 'Gorai.003G130100' => 'gra', 'Gorai.004G005300' => 'gra', 'Gorai.007G376500' => 'gra', 'Gorai.012G104700' => 'gra', 'GSVIVG01017946001' => 'vvi', 'GSVIVG01024928001' => 'vvi', 'GSVIVG01028227001' => 'vvi', 'GSVIVG01034151001' => 'vvi', 'HanXRQChr05g0135031' => 'han', 'HanXRQChr05g0135041' => 'han', 'HanXRQChr05g0140021' => 'han', 'HanXRQChr06g0178981' => 'han', 'HanXRQChr07g0188251' => 'han', 'HanXRQChr08g0235311' => 'han', 'HanXRQChr09g0271011' => 'han', 'HanXRQChr10g0293321' => 'han', 'HanXRQChr13g0388171' => 'han', 'Haze_00916' => 'cav', 'Haze_05063' => 'cav', 'Haze_20814' => 'cav', 'Haze_24128' => 'cav', 'Hma1.2p1_0745F.1_g212010' => 'hma', 'Hma1.2p1_0757F.1_g213260' => 'hma', 'Hma1.2p1_0936F.1_g238840' => 'hma', 'Hma1.2p1_1735F.1_g299890' => 'hma', 'Hma1.2p1_1861F.1_g305685' => 'hma', 'HPP92_003397' => 'vpl', 'HPP92_012597' => 'vpl', 'HPP92_015520' => 'vpl', 'HPP92_015539' => 'vpl', 'HPP92_020373' => 'vpl', 'Hund04938' => 'sun', 'Hund10677' => 'sun', 'Hund11033' => 'sun', 'Hund12155' => 'sun', 'Lalb_Chr01g0022551' => 'lal', 'Lalb_Chr03g0042341' => 'lal', 'Lalb_Chr07g0192931' => 'lal', 'Lalb_Chr12g0209551' => 'lal', 'Lalb_Chr19g0125251' => 'lal', 'Lalb_Chr19g0137891' => 'lal', 'Lalb_Chr21g0304641' => 'lal', 'Lalb_Chr21g0309881' => 'lal', 'Lj1A5T12' => 'lonja', 'Lj1C148G10' => 'lonja', 'Lj2A93T83' => 'lonja', 'Lj3A738G68' => 'lonja', 'Lj3C966T1' => 'lonja', 'Lj3g0018958' => 'lja', 'Lj3g0021831' => 'lja', 'Lj3g0025443' => 'lja', 'Lj4g0026809' => 'lja', 'Lj5g0012558' => 'lja', 'Lj5g0021586' => 'lja', 'Lsat_1_v5_gn_5_156840' => 'lsa', 'Lsat_1_v5_gn_8_73460' => 'lsa', 'Lsat_1_v5_gn_8_73481' => 'lsa', 'Lsat_1_v5_gn_9_31601' => 'lsa', 'Lsat_1_v5_gn_9_77320' => 'lsa', 'Manes.01G171300' => 'mes', 'Manes.01G171400' => 'mes', 'Manes.01G236100' => 'mes', 'Manes.02G130500' => 'mes', 'Manes.02G130600' => 'mes', 'Manes.03G180200' => 'mes', 'Manes.05G007000' => 'mes', 'Manes.08G084400' => 'mes', 'Manes.09G092600' => 'mes', 'Manes.15G027900' => 'mes', 'MBI04_g40948_MAGBIO' => 'mbi', 'MBI14_g12123_MAGBIO' => 'mbi', 'MBI18_g28915_MAGBIO' => 'mbi', 'MCO09G053' => 'mco', 'MCO11G782' => 'mco', 'MCO15G215' => 'mco', 'MD03G1088500' => 'mdo', 'MD03G1088600' => 'mdo', 'MD04G1130800' => 'mdo', 'MD09G1291700' => 'mdo', 'MD11G1097500' => 'mdo', 'MD11G1097600' => 'mdo', 'MD12G1143900' => 'mdo', 'MD13G1191400' => 'mdo', 'MD16G1191500' => 'mdo', 'Medtr1g085570' => 'mtr', 'Medtr1g104610' => 'mtr', 'Medtr2g097520' => 'mtr', 'Medtr4g021800' => 'mtr', 'Medtr4g021825' => 'mtr', 'Medtr4g064270' => 'mtr', 'Medtr4g064380' => 'mtr', 'Medtr7g062150' => 'mtr', 'MELO3C003138.2' => 'cme', 'MELO3C005187.2' => 'cme', 'MELO3C009252.2' => 'cme', 'MELO3C014481.2' => 'cme', 'MELO3C020616.2' => 'cme', 'MELO3C020617.2' => 'cme', 'MELO3C020618.2' => 'cme', 'Migut.G00328' => 'egut', 'Migut.J00320' => 'egut', 'Migut.L01000' => 'egut', 'Migut.L01953' => 'egut', 'MSTRG.10253' => 'ama', 'MSTRG.19077' => 'ama', 'MSTRG.26780' => 'ama', 'MSTRG.4023' => 'ama', 'MSTRG.5655' => 'ama', 'MSTRG.9992' => 'ama', 'Nitab4.5_0000043g0310' => 'nta', 'Nitab4.5_0000463g0080' => 'nta', 'Nitab4.5_0000705g0170' => 'nta', 'Nitab4.5_0001326g0060' => 'nta', 'Nitab4.5_0001628g0030' => 'nta', 'Nitab4.5_0002103g0110' => 'nta', 'Nitab4.5_0002946g0030' => 'nta', 'Nitab4.5_0004639g0030' => 'nta', 'Nn2g11149' => 'nnu', 'Nn2g13389' => 'nnu', 'Nn4g25326' => 'nnu', 'Nn4g26290' => 'nnu', 'Nn5g29865' => 'nnu', 'Oeu004163.1' => 'oeu', 'Oeu006901.1' => 'oeu', 'Oeu010096.1' => 'oeu', 'Oeu024340.1' => 'oeu', 'Oeu048369.1' => 'oeu', 'Os01g0973000' => 'osa', 'Os03g0273800' => 'osa', 'Os03g0701200' => 'osa', 'Os03g0834050' => 'osa', 'Os07g0634400' => 'osa', 'Peaxi162Scf00092g01414' => 'pax', 'Peaxi162Scf00165g00818' => 'pax', 'Peaxi162Scf00309g00516' => 'pax', 'Peaxi162Scf00774g00218' => 'pax', 'PGR004G1824' => 'pgr', 'PGR004G2606' => 'pgr', 'PGR031G2716' => 'pgr', 'PGR102G2460' => 'pgr', 'PGR142G2599' => 'pgr', 'PGSC0003DMG400000843' => 'stu', 'PGSC0003DMG400008829' => 'stu', 'PGSC0003DMG400030418' => 'stu', 'PGSC0003DMG400031834' => 'stu', 'PGSC0003DMG401028300' => 'stu', 'PGSC0003DMG402028300' => 'stu', 'Phvul.001G219300' => 'pvu', 'Phvul.007G056000' => 'pvu', 'Phvul.007G208000' => 'pvu', 'Phvul.008G119500' => 'pvu', 'Phvul.010G011200' => 'pvu', 'Phvul.010G014800' => 'pvu', 'Phvul.011G062900' => 'pvu', 'Phvul.L007043' => 'pvu', 'Potri.001G242300' => 'ptr', 'Potri.002G185300' => 'ptr', 'Potri.006G086900' => 'ptr', 'Potri.008G151700' => 'ptr', 'Potri.009G033500' => 'ptr', 'Potri.010G089300' => 'ptr', 'Potri.014G110800' => 'ptr', 'Pp3c27_8130' => 'ppa', 'Pp3c6_27410' => 'ppa', 'PRCOL_00001659' => 'pco', 'PRCOL_00001927' => 'pco', 'PRCOL_00003649' => 'pco', 'Prupe.1G011600' => 'ppe', 'Prupe.3G000800' => 'ppe', 'Prupe.3G001100' => 'ppe', 'Prupe.6G072700' => 'ppe', 'Prupe.6G072800' => 'ppe', 'Prupe.6G257300' => 'ppe', 'Prupe.8G033000' => 'ppe', 'Psat0s2633g0080' => 'psa', 'Psat0s3396g0080' => 'psa', 'Psat0s3396g0200' => 'psa', 'Psat3g139080' => 'psa', 'Psat5g285080' => 'psa', 'Psat6g157760' => 'psa', 'Psat6g208440' => 'psa', 'Psat7g215320' => 'psa', 'Psat7g215400' => 'psa', 'Psat7g235600' => 'psa', 'Psat7g235760' => 'psa', 'PSO063G4603' => 'pso', 'PSO210G0182' => 'pso', 'PSO210G0196' => 'pso', 'PSO339G0394' => 'pso', 'PSO339G4127' => 'pso', 'PSO513G0064' => 'pso', 'PSO761G0079' => 'pso', 'QL01p031003' => 'qlo', 'QL01p031078' => 'qlo', 'QL06p003004' => 'qlo', 'QL07p048731' => 'qlo', 'QL09p037427' => 'qlo', 'RcHm_v2.0_Chr3g0466361' => 'rch', 'RcHm_v2.0_Chr3g0485571' => 'rch', 'RcHm_v2.0_Chr4g0416551' => 'rch', 'RcHm_v2.0_Chr5g0065831' => 'rch', 'Rhsim01G0230500' => 'rsi', 'Rhsim05G0194000' => 'rsi', 'Rhsim08G0250400' => 'rsi', 'Sabra02G0131000' => 'sbr', 'Sabra06G0066300' => 'sbr', 'Sabra08G0115500' => 'sbr', 'Sabra09G0023900' => 'sbr', 'Sabra10G0054000' => 'sbr', 'Sabra14G0081500' => 'sbr', 'Sabra16G0147100' => 'sbr', 'SalBow2G2957' => 'sbo', 'SalBow4G3320' => 'sbo', 'SalBow8G1894' => 'sbo', 'Sc07g0007950' => 'sci', 'Sc12g0001360' => 'sci', 'Sc13g0004330' => 'sci', 'Sc20g0005010' => 'sci', 'Sed0000361' => 'sed', 'Sed0001706' => 'sed', 'Sed0002422' => 'sed', 'Sed0004029' => 'sed', 'Sed0004602' => 'sed', 'Sed0004943' => 'sed', 'Sed0008646' => 'sed', 'Sed0023313' => 'sed', 'Sed0024843' => 'sed', 'SEGI_00081' => 'sgi', 'SEGI_00947' => 'sgi', 'SEGI_04046' => 'sgi', 'SEGI_06880' => 'sgi', 'SEGI_09736' => 'sgi', 'SEGI_12741' => 'sgi', 'SEGI_14530' => 'sgi', 'SEGI_20705' => 'sgi', 'SEGI_26088' => 'sgi', 'SEGI_28323' => 'sgi', 'SEGI_33343' => 'sgi', 'SGA_v2.0_scaffold126G33775' => 'sas', 'SGA_v2.0_scaffold2G01337' => 'sas', 'SGA_v2.0_scaffold38G15006' => 'sas', 'SGA_v2.0_scaffold39G15264' => 'sas', 'SGA_v2.0_scaffold453G51880' => 'sas', 'SHI12696' => 'shi', 'SMO367G1096' => 'smo', 'Solyc01g068630.3' => 'sly', 'Solyc05g011880.3' => 'sly', 'Solyc06g076300.3' => 'sly', 'Solyc09g010940.4' => 'sly', 'Solyc09g075890.3' => 'sly', 'Sopen01g030560' => 'spe', 'Sopen05g006630' => 'spe', 'Sopen06g032720' => 'spe', 'Sopen09g005660' => 'spe', 'Sopen09g030690' => 'spe', 'Sp4g14540' => 'spa', 'Sp4g20030' => 'spa', 'Sp5g01320' => 'spa', 'Sp6g21170' => 'spa', 'Sp6g21180' => 'spa', 'Sp6g21190' => 'spa', 'Sp6g40220' => 'spa', 'TAR362G0122' => 'tar', 'TAR362G1338' => 'tar', 'TAR369G0590' => 'tar', 'TAR371G0824' => 'tar', 'TAR622G1429' => 'tar', 'TAR623G0734' => 'tar', 'TAR625G0441' => 'tar', 'TAR629G0976' => 'tar', 'TAR633G1195' => 'tar', 'TAR636G2660' => 'tar', 'THA.LOC104799440' => 'tha', 'THA.LOC104800966' => 'tha', 'THA.LOC104806559' => 'tha', 'THA.LOC104810765' => 'tha', 'THA.LOC104816266' => 'tha', 'THA.LOC104817419' => 'tha', 'THA.LOC104827021' => 'tha', 'Thecc.01G327400' => 'tca', 'Thecc.04G229200' => 'tca', 'Thecc.05G037400' => 'tca', 'Thecc.09G318600' => 'tca', 'Thecc.09G318700' => 'tca', 'Thhalv10006238m.g' => 'esa', 'Thhalv10014321m.g' => 'esa', 'Thhalv10014335m.g' => 'esa', 'Thhalv10015826m.g' => 'esa', 'Thhalv10017107m.g' => 'esa', 'Thhalv10017180m.g' => 'esa', 'Thhalv10029339m.g' => 'esa', 'TPR.G1699' => 'tpr', 'TPR.G23609' => 'tpr', 'TPR.G3081' => 'tpr', 'TPR.G40397' => 'tpr', 'TPR.G5522' => 'tpr', 'TPR.G5618' => 'tpr', 'TPR.G5626' => 'tpr', 'TWI09G1632' => 'twi', 'TWI23G1230' => 'twi', 'TWI53G1064' => 'twi', 'TWI59G0751' => 'twi', 'TWI74G0947' => 'twi', 'TWI77G0337' => 'twi', 'TWI79G1254' => 'twi', 'unitig_0.g2341' => 'ugi', 'unitig_26.g10006' => 'ugi', 'unitig_26.g10008' => 'ugi', 'unitig_26.g9192' => 'ugi', 'vmacro14547' => 'vma', 'vmacro15333' => 'vma', 'vmacro18743' => 'vma', 'vmacro20166' => 'vma', 'VMungo0331G0523' => 'vmu', 'VMungo0331G1202' => 'vmu', 'VMungo0720G1228' => 'vmu', 'VMungo0720G1514' => 'vmu', 'VMungo1080G0169' => 'vmu', 'VMungo1127G1475' => 'vmu', 'VMungo1383G1208' => 'vmu', 'VMungo1383G1698' => 'vmu', 'Zm00001eb012270' => 'zma', 'Zm00001eb054100' => 'zma', 'Zm00001eb063350' => 'zma', 'Zm00001eb328560' => 'zma', 'Zm00001eb342820' => 'zma', 'Zm00001eb362210' => 'zma', 'Zm00001eb397730' => 'zma', 'Zm00001eb399750' => 'zma' ) $gf_id = 'HOM05D000959' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000959' ) $data_identifier = 'HOM05D000959' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 5, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 5, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 10, 'mbi' => (int) 3, 'mco' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 2, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 3, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 11, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399750' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000959', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '622', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p07100' => 'bna', 'A03p11720' => 'bna', 'A05p08300' => 'bna', 'A05p13380' => 'bna', 'A09p54130' => 'bna', 'A10p16690' => 'bna', 'A10p16700' => 'bna', 'A10p33390' => 'bna', 'Aa31LG10G16020' => 'aar', 'Aa31LG1G11810' => 'aar', 'Aa31LG1G11830' => 'aar', 'Aa31LG1G22510' => 'aar', 'Aa31LG5G4890' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5793' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2310' => 'aag', 'Actinidia08499' => 'ach', 'Actinidia11262' => 'ach', 'Actinidia23926' => 'ach', 'Actinidia34420' => 'ach', 'Actinidia36970' => 'ach', 'Ah.02g111220' => 'amhyb', 'Ah.15g097750' => 'amhyb', 'AL4G27500' => 'aly', 'AL6G11470' => 'aly', 'AL8G35950' => 'aly', 'AL8G35960' => 'aly', 'AL8G35970' => 'aly', 'Aqoxy1G00912' => 'aox', 'Aqoxy2G02253' => 'aox', 'Aqoxy2G02411' => 'aox', 'Aqoxy5G00485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BZ66YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K8ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM4FUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6BF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HFV7XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25JBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0YNNV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MAKK6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P70IT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP2Z6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V61LZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YWP64R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3S9AI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7PGHH' => 'arhy', 'AT2G32150' => 'ath', 'AT3G62040' => 'ath', 'AT5G02230' => 'ath', 'AT5G59480' => 'ath', 'AT5G59490' => 'ath', 'ATR0332G060' => 'atr', 'ATR0559G190' => 'atr', 'ATR0693G294' => 'atr', 'Atru.chr3.3975' => 'acertr', 'Atru.chr3.3976' => 'acertr', 'Atru.chr3.3977' => 'acertr', 'Atru.chr4.2498' => 'acertr', 'Atru.chr5.838' => 'acertr', 'Atru.chr8.1990' => 'acertr', 'Atru.chr8.1991' => 'acertr', 'Atru.chr8.1992' => 'acertr', 'AUR62001759' => 'cqu', 'AUR62009545' => 'cqu', 'AUR62010474' => 'cqu', 'AUR62025820' => 'cqu', 'AUR62030422' => 'cqu', 'AUR62033605' => 'cqu', 'AUR62038615' => 'cqu', 'AUR62041347' => 'cqu', 'BcaB01g04574' => 'bca', 'BcaB02g09263' => 'bca', 'BcaB02g10453' => 'bca', 'BcaB05g22513' => 'bca', 'BcaB08g36253' => 'bca', 'BcaB08g36254' => 'bca', 'BcaC01g06519' => 'bca', 'BcaC02g11889' => 'bca', 'BcaC03g14010' => 'bca', 'BcaC03g18439' => 'bca', 'BcaC04g19765' => 'bca', 'BcaC09g48432' => 'bca', 'BcaNung07302' => 'bca', 'BolC2t06040H' => 'bol', 'BolC2t07346H' => 'bol', 'BolC3t13817H' => 'bol', 'BolC4t22625H' => 'bol', 'BolC4t23297H' => 'bol', 'BolC8t51278H' => 'bol', 'BolC9t58050H' => 'bol', 'BolC9t58051H' => 'bol', 'BolC9t60163H' => 'bol', 'BraA02t04712Z' => 'bra', 'BraA02t05791Z' => 'bra', 'BraA03t10483Z' => 'bra', 'BraA05t19795Z' => 'bra', 'BraA05t20276Z' => 'bra', 'BraA09t40827Z' => 'bra', 'BraA10t43750Z' => 'bra', 'BraA10t43751Z' => 'bra', 'BraA10t45370Z' => 'bra', 'C02p00400' => 'bna', 'C02p12460' => 'bna', 'C03p13680' => 'bna', 'C04p10270' => 'bna', 'C04p17500' => 'bna', 'C08p37010' => 'bna', 'C09p51880' => 'bna', 'C09p51890' => 'bna', 'C09p74300' => 'bna', 'CAN.G179.26' => 'can', 'CAN.G3384.1' => 'can', 'CAN.G394.68' => 'can', 'CAN.G907.13' => 'can', 'CANSAT11G0012' => 'cansat', 'CANSAT25G1586' => 'cansat', 'CANSAT35G0735' => 'cansat', 'CANSAT54G0556' => 'cansat', 'CANSAT64G0356' => 'cansat', 'CANSAT78G2042' => 'cansat', 'CARHR125920' => 'chi', 'CARHR131910' => 'chi', 'CARHR172390' => 'chi', 'CARHR211140' => 'chi', 'CARHR285850' => 'chi', 'CARHR285860' => 'chi', 'Carub.0004s1347' => 'cru', 'Carub.0004s1960' => 'cru', 'Carub.0005s2880' => 'cru', 'Carub.0006s0107' => 'cru', 'Carub.0008s2015' => 'cru', 'Carub.0008s2016' => 'cru', 'Carub.0008s2017' => 'cru', 'Ca_01315_v3' => 'car', 'Ca_05063_v3' => 'car', 'Ca_10231_v3' => 'car', 'Ca_10913_v3' => 'car', 'Ca_19156_v3' => 'car', 'Ca_23644_v3' => 'car', 'Ca_26735_v3' => 'car', 'Cc01_g13130' => 'ccan', 'Cc02_g21690' => 'ccan', 'Cc03_g03600' => 'ccan', 'Cc06_g02510' => 'ccan', 'CDE02G1265' => 'cde', 'CDE05G0415' => 'cde', 'CDE08G1082' => 'cde', 'Cfa005780' => 'cfa', 'Cfa011522' => 'cfa', 'Cfa011523' => 'cfa', 'Cfa015627' => 'cfa', 'Cfa017359' => 'cfa', 'Ciclev10005687m.g' => 'ccl', 'Ciclev10012173m.g' => 'ccl', 'Ciclev10021621m.g' => 'ccl', 'Ciclev10028968m.g' => 'ccl', 'Ciclev10029907m.g' => 'ccl', 'CiPaw.01G164800' => 'cil', 'CiPaw.07G083700' => 'cil', 'CiPaw.07G127000' => 'cil', 'CiPaw.07G136900' => 'cil', 'CiPaw.08G081700' => 'cil', 'CiPaw.09G194600' => 'cil', 'CiPaw.10G146500' => 'cil', 'CiPaw.13G091500' => 'cil', 'CiPaw.13G091600' => 'cil', 'ClCG00G003390' => 'cla', 'ClCG01G007220' => 'cla', 'ClCG03G001370' => 'cla', 'ClCG04G008100' => 'cla', 'ClCG06G006110' => 'cla', 'ClCG06G006130' => 'cla', 'ClCG10G021210' => 'cla', 'COL.COLO4_07648' => 'col', 'COL.COLO4_07650' => 'col', 'COL.COLO4_07651' => 'col', 'COL.COLO4_14780' => 'col', 'COL.COLO4_18546' => 'col', 'COL.COLO4_18547' => 'col', 'COL.COLO4_23103' => 'col', 'COL.COLO4_30419' => 'col', 'COL.COLO4_34232' => 'col', 'Cpa.g.sc169.20' => 'cpa', 'Cpa.g.sc57.45' => 'cpa', 'Cpa.g.sc58.124' => 'cpa', 'Cpa.g.sc58.125' => 'cpa', 'Cpa.g.sc81.118' => 'cpa', 'Cpa.g.sc81.119' => 'cpa', 'Cre12.g524700' => 'cre', 'CsaV3_1G034430' => 'csa', 'CsaV3_1G034440' => 'csa', 'CsaV3_1G034450' => 'csa', 'CsaV3_3G034830' => 'csa', 'CsaV3_4G025090' => 'csa', 'CsaV3_5G018660' => 'csa', 'CsaV3_6G038160' => 'csa', 'CSS0003447' => 'camsi', 'CSS0017840' => 'camsi', 'CSS0019260' => 'camsi', 'CSS0040375' => 'camsi', 'CSS0042533' => 'camsi', 'DCAR_005960' => 'dca', 'DCAR_012104' => 'dca', 'DCAR_012105' => 'dca', 'DCAR_012293' => 'dca', 'DCAR_015632' => 'dca', 'DCAR_024602' => 'dca', 'DCAR_028752' => 'dca', 'Dinv06261' => 'din', 'Dinv13982' => 'din', 'Dinv17029' => 'din', 'Dinv18463' => 'din', 'Dinv33181' => 'din', 'Dinv35585' => 'din', 'Dinv37161' => 'din', 'Dinv42977' => 'din', 'Dinv43122' => 'din', 'Dinv44517' => 'din', 'Duzib093G0256' => 'dzi', 'Duzib106G1254' => 'dzi', 'Duzib128G1789' => 'dzi', 'Duzib133G0633' => 'dzi', 'Duzib138G0510' => 'dzi', 'Duzib150G1084' => 'dzi', 'Duzib168G0488' => 'dzi', 'Duzib168G1523' => 'dzi', 'Duzib170G0133' => 'dzi', 'ECA234G1433' => 'eca', 'ECA236G1432' => 'eca', 'ECA236G2256' => 'eca', 'ECA236G2365' => 'eca', 'ECA236G4830' => 'eca', 'ECA248G1505' => 'eca', 'EL10Ac3g06431' => 'bvu', 'EL10Ac5g12577' => 'bvu', 'EL10Ac6g13533' => 'bvu', 'EL10Ac7g16045' => 'bvu', 'Eucgr.A01281' => 'egr', 'Eucgr.B02326' => 'egr', 'Eucgr.H03532' => 'egr', 'Eucgr.K00553' => 'egr', 'Eucgr.K03116' => 'egr', 'FAN02G3963' => 'fan', 'FAN05G0438' => 'fan', 'FAN09G2434' => 'fan', 'FAN12G3984' => 'fan', 'FAN14G0798' => 'fan', 'FAN17G0652' => 'fan', 'FAN19G1988' => 'fan', 'FAN22G0632' => 'fan', 'FAN23G0387' => 'fan', 'FAN26G1323' => 'fan', 'FAN28G0666' => 'fan', 'FvH4_1g26080' => 'fve', 'FvH4_3g36780' => 'fve', 'FvH4_4g15270' => 'fve', 'FvH4_6g13490' => 'fve', 'Glyma.01G098700' => 'gma', 'Glyma.03G065900' => 'gma', 'Glyma.03G073754' => 'gma', 'Glyma.03G073758' => 'gma', 'Glyma.03G083200' => 'gma', 'Glyma.03G225500' => 'gma', 'Glyma.05G037766' => 'gma', 'Glyma.07G133500' => 'gma', 'Glyma.10G139400' => 'gma', 'Glyma.10G248900' => 'gma', 'Glyma.11G137800' => 'gma', 'Glyma.12G061300' => 'gma', 'Glyma.13G337900' => 'gma', 'Glyma.15G036600' => 'gma', 'Glyma.18G182800' => 'gma', 'Glyma.19G222500' => 'gma', 'Glyma.20G144800' => 'gma', 'Gohir.A01G222000' => 'ghi', 'Gohir.A03G044000' => 'ghi', 'Gohir.A03G044100' => 'ghi', 'Gohir.A04G083100' => 'ghi', 'Gohir.A07G127200' => 'ghi', 'Gohir.A07G132400' => 'ghi', 'Gohir.A08G000700' => 'ghi', 'Gohir.A11G327300' => 'ghi', 'Gohir.D01G211500' => 'ghi', 'Gohir.D03G123400' => 'ghi', 'Gohir.D03G123500' => 'ghi', 'Gohir.D04G121800' => 'ghi', 'Gohir.D07G131500' => 'ghi', 'Gohir.D07G136600' => 'ghi', 'Gohir.D08G011600' => 'ghi', 'Gohir.D11G346200' => 'ghi', 'Gorai.001G142800' => 'gra', 'Gorai.001G148700' => 'gra', 'Gorai.002G257300' => 'gra', 'Gorai.003G130000' => 'gra', 'Gorai.003G130100' => 'gra', 'Gorai.004G005300' => 'gra', 'Gorai.007G376500' => 'gra', 'Gorai.012G104700' => 'gra', 'GSVIVG01017946001' => 'vvi', 'GSVIVG01024928001' => 'vvi', 'GSVIVG01028227001' => 'vvi', 'GSVIVG01034151001' => 'vvi', 'HanXRQChr05g0135031' => 'han', 'HanXRQChr05g0135041' => 'han', 'HanXRQChr05g0140021' => 'han', 'HanXRQChr06g0178981' => 'han', 'HanXRQChr07g0188251' => 'han', 'HanXRQChr08g0235311' => 'han', 'HanXRQChr09g0271011' => 'han', 'HanXRQChr10g0293321' => 'han', 'HanXRQChr13g0388171' => 'han', 'Haze_00916' => 'cav', 'Haze_05063' => 'cav', 'Haze_20814' => 'cav', 'Haze_24128' => 'cav', 'Hma1.2p1_0745F.1_g212010' => 'hma', 'Hma1.2p1_0757F.1_g213260' => 'hma', 'Hma1.2p1_0936F.1_g238840' => 'hma', 'Hma1.2p1_1735F.1_g299890' => 'hma', 'Hma1.2p1_1861F.1_g305685' => 'hma', 'HPP92_003397' => 'vpl', 'HPP92_012597' => 'vpl', 'HPP92_015520' => 'vpl', 'HPP92_015539' => 'vpl', 'HPP92_020373' => 'vpl', 'Hund04938' => 'sun', 'Hund10677' => 'sun', 'Hund11033' => 'sun', 'Hund12155' => 'sun', 'Lalb_Chr01g0022551' => 'lal', 'Lalb_Chr03g0042341' => 'lal', 'Lalb_Chr07g0192931' => 'lal', 'Lalb_Chr12g0209551' => 'lal', 'Lalb_Chr19g0125251' => 'lal', 'Lalb_Chr19g0137891' => 'lal', 'Lalb_Chr21g0304641' => 'lal', 'Lalb_Chr21g0309881' => 'lal', 'Lj1A5T12' => 'lonja', 'Lj1C148G10' => 'lonja', 'Lj2A93T83' => 'lonja', 'Lj3A738G68' => 'lonja', 'Lj3C966T1' => 'lonja', 'Lj3g0018958' => 'lja', 'Lj3g0021831' => 'lja', 'Lj3g0025443' => 'lja', 'Lj4g0026809' => 'lja', 'Lj5g0012558' => 'lja', 'Lj5g0021586' => 'lja', 'Lsat_1_v5_gn_5_156840' => 'lsa', 'Lsat_1_v5_gn_8_73460' => 'lsa', 'Lsat_1_v5_gn_8_73481' => 'lsa', 'Lsat_1_v5_gn_9_31601' => 'lsa', 'Lsat_1_v5_gn_9_77320' => 'lsa', 'Manes.01G171300' => 'mes', 'Manes.01G171400' => 'mes', 'Manes.01G236100' => 'mes', 'Manes.02G130500' => 'mes', 'Manes.02G130600' => 'mes', 'Manes.03G180200' => 'mes', 'Manes.05G007000' => 'mes', 'Manes.08G084400' => 'mes', 'Manes.09G092600' => 'mes', 'Manes.15G027900' => 'mes', 'MBI04_g40948_MAGBIO' => 'mbi', 'MBI14_g12123_MAGBIO' => 'mbi', 'MBI18_g28915_MAGBIO' => 'mbi', 'MCO09G053' => 'mco', 'MCO11G782' => 'mco', 'MCO15G215' => 'mco', 'MD03G1088500' => 'mdo', 'MD03G1088600' => 'mdo', 'MD04G1130800' => 'mdo', 'MD09G1291700' => 'mdo', 'MD11G1097500' => 'mdo', 'MD11G1097600' => 'mdo', 'MD12G1143900' => 'mdo', 'MD13G1191400' => 'mdo', 'MD16G1191500' => 'mdo', 'Medtr1g085570' => 'mtr', 'Medtr1g104610' => 'mtr', 'Medtr2g097520' => 'mtr', 'Medtr4g021800' => 'mtr', 'Medtr4g021825' => 'mtr', 'Medtr4g064270' => 'mtr', 'Medtr4g064380' => 'mtr', 'Medtr7g062150' => 'mtr', 'MELO3C003138.2' => 'cme', 'MELO3C005187.2' => 'cme', 'MELO3C009252.2' => 'cme', 'MELO3C014481.2' => 'cme', 'MELO3C020616.2' => 'cme', 'MELO3C020617.2' => 'cme', 'MELO3C020618.2' => 'cme', 'Migut.G00328' => 'egut', 'Migut.J00320' => 'egut', 'Migut.L01000' => 'egut', 'Migut.L01953' => 'egut', 'MSTRG.10253' => 'ama', 'MSTRG.19077' => 'ama', 'MSTRG.26780' => 'ama', 'MSTRG.4023' => 'ama', 'MSTRG.5655' => 'ama', 'MSTRG.9992' => 'ama', 'Nitab4.5_0000043g0310' => 'nta', 'Nitab4.5_0000463g0080' => 'nta', 'Nitab4.5_0000705g0170' => 'nta', 'Nitab4.5_0001326g0060' => 'nta', 'Nitab4.5_0001628g0030' => 'nta', 'Nitab4.5_0002103g0110' => 'nta', 'Nitab4.5_0002946g0030' => 'nta', 'Nitab4.5_0004639g0030' => 'nta', 'Nn2g11149' => 'nnu', 'Nn2g13389' => 'nnu', 'Nn4g25326' => 'nnu', 'Nn4g26290' => 'nnu', 'Nn5g29865' => 'nnu', 'Oeu004163.1' => 'oeu', 'Oeu006901.1' => 'oeu', 'Oeu010096.1' => 'oeu', 'Oeu024340.1' => 'oeu', 'Oeu048369.1' => 'oeu', 'Os01g0973000' => 'osa', 'Os03g0273800' => 'osa', 'Os03g0701200' => 'osa', 'Os03g0834050' => 'osa', 'Os07g0634400' => 'osa', 'Peaxi162Scf00092g01414' => 'pax', 'Peaxi162Scf00165g00818' => 'pax', 'Peaxi162Scf00309g00516' => 'pax', 'Peaxi162Scf00774g00218' => 'pax', 'PGR004G1824' => 'pgr', 'PGR004G2606' => 'pgr', 'PGR031G2716' => 'pgr', 'PGR102G2460' => 'pgr', 'PGR142G2599' => 'pgr', 'PGSC0003DMG400000843' => 'stu', 'PGSC0003DMG400008829' => 'stu', 'PGSC0003DMG400030418' => 'stu', 'PGSC0003DMG400031834' => 'stu', 'PGSC0003DMG401028300' => 'stu', 'PGSC0003DMG402028300' => 'stu', 'Phvul.001G219300' => 'pvu', 'Phvul.007G056000' => 'pvu', 'Phvul.007G208000' => 'pvu', 'Phvul.008G119500' => 'pvu', 'Phvul.010G011200' => 'pvu', 'Phvul.010G014800' => 'pvu', 'Phvul.011G062900' => 'pvu', 'Phvul.L007043' => 'pvu', 'Potri.001G242300' => 'ptr', 'Potri.002G185300' => 'ptr', 'Potri.006G086900' => 'ptr', 'Potri.008G151700' => 'ptr', 'Potri.009G033500' => 'ptr', 'Potri.010G089300' => 'ptr', 'Potri.014G110800' => 'ptr', 'Pp3c27_8130' => 'ppa', 'Pp3c6_27410' => 'ppa', 'PRCOL_00001659' => 'pco', 'PRCOL_00001927' => 'pco', 'PRCOL_00003649' => 'pco', 'Prupe.1G011600' => 'ppe', 'Prupe.3G000800' => 'ppe', 'Prupe.3G001100' => 'ppe', 'Prupe.6G072700' => 'ppe', 'Prupe.6G072800' => 'ppe', 'Prupe.6G257300' => 'ppe', 'Prupe.8G033000' => 'ppe', 'Psat0s2633g0080' => 'psa', 'Psat0s3396g0080' => 'psa', 'Psat0s3396g0200' => 'psa', 'Psat3g139080' => 'psa', 'Psat5g285080' => 'psa', 'Psat6g157760' => 'psa', 'Psat6g208440' => 'psa', 'Psat7g215320' => 'psa', 'Psat7g215400' => 'psa', 'Psat7g235600' => 'psa', 'Psat7g235760' => 'psa', 'PSO063G4603' => 'pso', 'PSO210G0182' => 'pso', 'PSO210G0196' => 'pso', 'PSO339G0394' => 'pso', 'PSO339G4127' => 'pso', 'PSO513G0064' => 'pso', 'PSO761G0079' => 'pso', 'QL01p031003' => 'qlo', 'QL01p031078' => 'qlo', 'QL06p003004' => 'qlo', 'QL07p048731' => 'qlo', 'QL09p037427' => 'qlo', 'RcHm_v2.0_Chr3g0466361' => 'rch', 'RcHm_v2.0_Chr3g0485571' => 'rch', 'RcHm_v2.0_Chr4g0416551' => 'rch', 'RcHm_v2.0_Chr5g0065831' => 'rch', 'Rhsim01G0230500' => 'rsi', 'Rhsim05G0194000' => 'rsi', 'Rhsim08G0250400' => 'rsi', 'Sabra02G0131000' => 'sbr', 'Sabra06G0066300' => 'sbr', 'Sabra08G0115500' => 'sbr', 'Sabra09G0023900' => 'sbr', 'Sabra10G0054000' => 'sbr', 'Sabra14G0081500' => 'sbr', 'Sabra16G0147100' => 'sbr', 'SalBow2G2957' => 'sbo', 'SalBow4G3320' => 'sbo', 'SalBow8G1894' => 'sbo', 'Sc07g0007950' => 'sci', 'Sc12g0001360' => 'sci', 'Sc13g0004330' => 'sci', 'Sc20g0005010' => 'sci', 'Sed0000361' => 'sed', 'Sed0001706' => 'sed', 'Sed0002422' => 'sed', 'Sed0004029' => 'sed', 'Sed0004602' => 'sed', 'Sed0004943' => 'sed', 'Sed0008646' => 'sed', 'Sed0023313' => 'sed', 'Sed0024843' => 'sed', 'SEGI_00081' => 'sgi', 'SEGI_00947' => 'sgi', 'SEGI_04046' => 'sgi', 'SEGI_06880' => 'sgi', 'SEGI_09736' => 'sgi', 'SEGI_12741' => 'sgi', 'SEGI_14530' => 'sgi', 'SEGI_20705' => 'sgi', 'SEGI_26088' => 'sgi', 'SEGI_28323' => 'sgi', 'SEGI_33343' => 'sgi', 'SGA_v2.0_scaffold126G33775' => 'sas', 'SGA_v2.0_scaffold2G01337' => 'sas', 'SGA_v2.0_scaffold38G15006' => 'sas', 'SGA_v2.0_scaffold39G15264' => 'sas', 'SGA_v2.0_scaffold453G51880' => 'sas', 'SHI12696' => 'shi', 'SMO367G1096' => 'smo', 'Solyc01g068630.3' => 'sly', 'Solyc05g011880.3' => 'sly', 'Solyc06g076300.3' => 'sly', 'Solyc09g010940.4' => 'sly', 'Solyc09g075890.3' => 'sly', 'Sopen01g030560' => 'spe', 'Sopen05g006630' => 'spe', 'Sopen06g032720' => 'spe', 'Sopen09g005660' => 'spe', 'Sopen09g030690' => 'spe', 'Sp4g14540' => 'spa', 'Sp4g20030' => 'spa', 'Sp5g01320' => 'spa', 'Sp6g21170' => 'spa', 'Sp6g21180' => 'spa', 'Sp6g21190' => 'spa', 'Sp6g40220' => 'spa', 'TAR362G0122' => 'tar', 'TAR362G1338' => 'tar', 'TAR369G0590' => 'tar', 'TAR371G0824' => 'tar', 'TAR622G1429' => 'tar', 'TAR623G0734' => 'tar', 'TAR625G0441' => 'tar', 'TAR629G0976' => 'tar', 'TAR633G1195' => 'tar', 'TAR636G2660' => 'tar', 'THA.LOC104799440' => 'tha', 'THA.LOC104800966' => 'tha', 'THA.LOC104806559' => 'tha', 'THA.LOC104810765' => 'tha', 'THA.LOC104816266' => 'tha', 'THA.LOC104817419' => 'tha', 'THA.LOC104827021' => 'tha', 'Thecc.01G327400' => 'tca', 'Thecc.04G229200' => 'tca', 'Thecc.05G037400' => 'tca', 'Thecc.09G318600' => 'tca', 'Thecc.09G318700' => 'tca', 'Thhalv10006238m.g' => 'esa', 'Thhalv10014321m.g' => 'esa', 'Thhalv10014335m.g' => 'esa', 'Thhalv10015826m.g' => 'esa', 'Thhalv10017107m.g' => 'esa', 'Thhalv10017180m.g' => 'esa', 'Thhalv10029339m.g' => 'esa', 'TPR.G1699' => 'tpr', 'TPR.G23609' => 'tpr', 'TPR.G3081' => 'tpr', 'TPR.G40397' => 'tpr', 'TPR.G5522' => 'tpr', 'TPR.G5618' => 'tpr', 'TPR.G5626' => 'tpr', 'TWI09G1632' => 'twi', 'TWI23G1230' => 'twi', 'TWI53G1064' => 'twi', 'TWI59G0751' => 'twi', 'TWI74G0947' => 'twi', 'TWI77G0337' => 'twi', 'TWI79G1254' => 'twi', 'unitig_0.g2341' => 'ugi', 'unitig_26.g10006' => 'ugi', 'unitig_26.g10008' => 'ugi', 'unitig_26.g9192' => 'ugi', 'vmacro14547' => 'vma', 'vmacro15333' => 'vma', 'vmacro18743' => 'vma', 'vmacro20166' => 'vma', 'VMungo0331G0523' => 'vmu', 'VMungo0331G1202' => 'vmu', 'VMungo0720G1228' => 'vmu', 'VMungo0720G1514' => 'vmu', 'VMungo1080G0169' => 'vmu', 'VMungo1127G1475' => 'vmu', 'VMungo1383G1208' => 'vmu', 'VMungo1383G1698' => 'vmu', 'Zm00001eb012270' => 'zma', 'Zm00001eb054100' => 'zma', 'Zm00001eb063350' => 'zma', 'Zm00001eb328560' => 'zma', 'Zm00001eb342820' => 'zma', 'Zm00001eb362210' => 'zma', 'Zm00001eb397730' => 'zma', 'Zm00001eb399750' => 'zma' ), 'gf_id' => 'HOM05D000959', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000959' ), 'data_identifier' => 'HOM05D000959', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000959', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '622', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p07100' => 'bna', 'A03p11720' => 'bna', 'A05p08300' => 'bna', 'A05p13380' => 'bna', 'A09p54130' => 'bna', 'A10p16690' => 'bna', 'A10p16700' => 'bna', 'A10p33390' => 'bna', 'Aa31LG10G16020' => 'aar', 'Aa31LG1G11810' => 'aar', 'Aa31LG1G11830' => 'aar', 'Aa31LG1G22510' => 'aar', 'Aa31LG5G4890' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5793' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2310' => 'aag', 'Actinidia08499' => 'ach', 'Actinidia11262' => 'ach', 'Actinidia23926' => 'ach', 'Actinidia34420' => 'ach', 'Actinidia36970' => 'ach', 'Ah.02g111220' => 'amhyb', 'Ah.15g097750' => 'amhyb', 'AL4G27500' => 'aly', 'AL6G11470' => 'aly', 'AL8G35950' => 'aly', 'AL8G35960' => 'aly', 'AL8G35970' => 'aly', 'Aqoxy1G00912' => 'aox', 'Aqoxy2G02253' => 'aox', 'Aqoxy2G02411' => 'aox', 'Aqoxy5G00485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BZ66YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K8ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM4FUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6BF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HFV7XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25JBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0YNNV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MAKK6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P70IT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP2Z6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V61LZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YWP64R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3S9AI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7PGHH' => 'arhy', 'AT2G32150' => 'ath', 'AT3G62040' => 'ath', 'AT5G02230' => 'ath', 'AT5G59480' => 'ath', 'AT5G59490' => 'ath', 'ATR0332G060' => 'atr', 'ATR0559G190' => 'atr', 'ATR0693G294' => 'atr', 'Atru.chr3.3975' => 'acertr', 'Atru.chr3.3976' => 'acertr', 'Atru.chr3.3977' => 'acertr', 'Atru.chr4.2498' => 'acertr', 'Atru.chr5.838' => 'acertr', 'Atru.chr8.1990' => 'acertr', 'Atru.chr8.1991' => 'acertr', 'Atru.chr8.1992' => 'acertr', 'AUR62001759' => 'cqu', 'AUR62009545' => 'cqu', 'AUR62010474' => 'cqu', 'AUR62025820' => 'cqu', 'AUR62030422' => 'cqu', 'AUR62033605' => 'cqu', 'AUR62038615' => 'cqu', 'AUR62041347' => 'cqu', 'BcaB01g04574' => 'bca', 'BcaB02g09263' => 'bca', 'BcaB02g10453' => 'bca', 'BcaB05g22513' => 'bca', 'BcaB08g36253' => 'bca', 'BcaB08g36254' => 'bca', 'BcaC01g06519' => 'bca', 'BcaC02g11889' => 'bca', 'BcaC03g14010' => 'bca', 'BcaC03g18439' => 'bca', 'BcaC04g19765' => 'bca', 'BcaC09g48432' => 'bca', 'BcaNung07302' => 'bca', 'BolC2t06040H' => 'bol', 'BolC2t07346H' => 'bol', 'BolC3t13817H' => 'bol', 'BolC4t22625H' => 'bol', 'BolC4t23297H' => 'bol', 'BolC8t51278H' => 'bol', 'BolC9t58050H' => 'bol', 'BolC9t58051H' => 'bol', 'BolC9t60163H' => 'bol', 'BraA02t04712Z' => 'bra', 'BraA02t05791Z' => 'bra', 'BraA03t10483Z' => 'bra', 'BraA05t19795Z' => 'bra', 'BraA05t20276Z' => 'bra', 'BraA09t40827Z' => 'bra', 'BraA10t43750Z' => 'bra', 'BraA10t43751Z' => 'bra', 'BraA10t45370Z' => 'bra', 'C02p00400' => 'bna', 'C02p12460' => 'bna', 'C03p13680' => 'bna', 'C04p10270' => 'bna', 'C04p17500' => 'bna', 'C08p37010' => 'bna', 'C09p51880' => 'bna', 'C09p51890' => 'bna', 'C09p74300' => 'bna', 'CAN.G179.26' => 'can', 'CAN.G3384.1' => 'can', 'CAN.G394.68' => 'can', 'CAN.G907.13' => 'can', 'CANSAT11G0012' => 'cansat', 'CANSAT25G1586' => 'cansat', 'CANSAT35G0735' => 'cansat', 'CANSAT54G0556' => 'cansat', 'CANSAT64G0356' => 'cansat', 'CANSAT78G2042' => 'cansat', 'CARHR125920' => 'chi', 'CARHR131910' => 'chi', 'CARHR172390' => 'chi', 'CARHR211140' => 'chi', 'CARHR285850' => 'chi', 'CARHR285860' => 'chi', 'Carub.0004s1347' => 'cru', 'Carub.0004s1960' => 'cru', 'Carub.0005s2880' => 'cru', 'Carub.0006s0107' => 'cru', 'Carub.0008s2015' => 'cru', 'Carub.0008s2016' => 'cru', 'Carub.0008s2017' => 'cru', 'Ca_01315_v3' => 'car', 'Ca_05063_v3' => 'car', 'Ca_10231_v3' => 'car', 'Ca_10913_v3' => 'car', 'Ca_19156_v3' => 'car', 'Ca_23644_v3' => 'car', 'Ca_26735_v3' => 'car', 'Cc01_g13130' => 'ccan', 'Cc02_g21690' => 'ccan', 'Cc03_g03600' => 'ccan', 'Cc06_g02510' => 'ccan', 'CDE02G1265' => 'cde', 'CDE05G0415' => 'cde', 'CDE08G1082' => 'cde', 'Cfa005780' => 'cfa', 'Cfa011522' => 'cfa', 'Cfa011523' => 'cfa', 'Cfa015627' => 'cfa', 'Cfa017359' => 'cfa', 'Ciclev10005687m.g' => 'ccl', 'Ciclev10012173m.g' => 'ccl', 'Ciclev10021621m.g' => 'ccl', 'Ciclev10028968m.g' => 'ccl', 'Ciclev10029907m.g' => 'ccl', 'CiPaw.01G164800' => 'cil', 'CiPaw.07G083700' => 'cil', 'CiPaw.07G127000' => 'cil', 'CiPaw.07G136900' => 'cil', 'CiPaw.08G081700' => 'cil', 'CiPaw.09G194600' => 'cil', 'CiPaw.10G146500' => 'cil', 'CiPaw.13G091500' => 'cil', 'CiPaw.13G091600' => 'cil', 'ClCG00G003390' => 'cla', 'ClCG01G007220' => 'cla', 'ClCG03G001370' => 'cla', 'ClCG04G008100' => 'cla', 'ClCG06G006110' => 'cla', 'ClCG06G006130' => 'cla', 'ClCG10G021210' => 'cla', 'COL.COLO4_07648' => 'col', 'COL.COLO4_07650' => 'col', 'COL.COLO4_07651' => 'col', 'COL.COLO4_14780' => 'col', 'COL.COLO4_18546' => 'col', 'COL.COLO4_18547' => 'col', 'COL.COLO4_23103' => 'col', 'COL.COLO4_30419' => 'col', 'COL.COLO4_34232' => 'col', 'Cpa.g.sc169.20' => 'cpa', 'Cpa.g.sc57.45' => 'cpa', 'Cpa.g.sc58.124' => 'cpa', 'Cpa.g.sc58.125' => 'cpa', 'Cpa.g.sc81.118' => 'cpa', 'Cpa.g.sc81.119' => 'cpa', 'Cre12.g524700' => 'cre', 'CsaV3_1G034430' => 'csa', 'CsaV3_1G034440' => 'csa', 'CsaV3_1G034450' => 'csa', 'CsaV3_3G034830' => 'csa', 'CsaV3_4G025090' => 'csa', 'CsaV3_5G018660' => 'csa', 'CsaV3_6G038160' => 'csa', 'CSS0003447' => 'camsi', 'CSS0017840' => 'camsi', 'CSS0019260' => 'camsi', 'CSS0040375' => 'camsi', 'CSS0042533' => 'camsi', 'DCAR_005960' => 'dca', 'DCAR_012104' => 'dca', 'DCAR_012105' => 'dca', 'DCAR_012293' => 'dca', 'DCAR_015632' => 'dca', 'DCAR_024602' => 'dca', 'DCAR_028752' => 'dca', 'Dinv06261' => 'din', 'Dinv13982' => 'din', 'Dinv17029' => 'din', 'Dinv18463' => 'din', 'Dinv33181' => 'din', 'Dinv35585' => 'din', 'Dinv37161' => 'din', 'Dinv42977' => 'din', 'Dinv43122' => 'din', 'Dinv44517' => 'din', 'Duzib093G0256' => 'dzi', 'Duzib106G1254' => 'dzi', 'Duzib128G1789' => 'dzi', 'Duzib133G0633' => 'dzi', 'Duzib138G0510' => 'dzi', 'Duzib150G1084' => 'dzi', 'Duzib168G0488' => 'dzi', 'Duzib168G1523' => 'dzi', 'Duzib170G0133' => 'dzi', 'ECA234G1433' => 'eca', 'ECA236G1432' => 'eca', 'ECA236G2256' => 'eca', 'ECA236G2365' => 'eca', 'ECA236G4830' => 'eca', 'ECA248G1505' => 'eca', 'EL10Ac3g06431' => 'bvu', 'EL10Ac5g12577' => 'bvu', 'EL10Ac6g13533' => 'bvu', 'EL10Ac7g16045' => 'bvu', 'Eucgr.A01281' => 'egr', 'Eucgr.B02326' => 'egr', 'Eucgr.H03532' => 'egr', 'Eucgr.K00553' => 'egr', 'Eucgr.K03116' => 'egr', 'FAN02G3963' => 'fan', 'FAN05G0438' => 'fan', 'FAN09G2434' => 'fan', 'FAN12G3984' => 'fan', 'FAN14G0798' => 'fan', 'FAN17G0652' => 'fan', 'FAN19G1988' => 'fan', 'FAN22G0632' => 'fan', 'FAN23G0387' => 'fan', 'FAN26G1323' => 'fan', 'FAN28G0666' => 'fan', 'FvH4_1g26080' => 'fve', 'FvH4_3g36780' => 'fve', 'FvH4_4g15270' => 'fve', 'FvH4_6g13490' => 'fve', 'Glyma.01G098700' => 'gma', 'Glyma.03G065900' => 'gma', 'Glyma.03G073754' => 'gma', 'Glyma.03G073758' => 'gma', 'Glyma.03G083200' => 'gma', 'Glyma.03G225500' => 'gma', 'Glyma.05G037766' => 'gma', 'Glyma.07G133500' => 'gma', 'Glyma.10G139400' => 'gma', 'Glyma.10G248900' => 'gma', 'Glyma.11G137800' => 'gma', 'Glyma.12G061300' => 'gma', 'Glyma.13G337900' => 'gma', 'Glyma.15G036600' => 'gma', 'Glyma.18G182800' => 'gma', 'Glyma.19G222500' => 'gma', 'Glyma.20G144800' => 'gma', 'Gohir.A01G222000' => 'ghi', 'Gohir.A03G044000' => 'ghi', 'Gohir.A03G044100' => 'ghi', 'Gohir.A04G083100' => 'ghi', 'Gohir.A07G127200' => 'ghi', 'Gohir.A07G132400' => 'ghi', 'Gohir.A08G000700' => 'ghi', 'Gohir.A11G327300' => 'ghi', 'Gohir.D01G211500' => 'ghi', 'Gohir.D03G123400' => 'ghi', 'Gohir.D03G123500' => 'ghi', 'Gohir.D04G121800' => 'ghi', 'Gohir.D07G131500' => 'ghi', 'Gohir.D07G136600' => 'ghi', 'Gohir.D08G011600' => 'ghi', 'Gohir.D11G346200' => 'ghi', 'Gorai.001G142800' => 'gra', 'Gorai.001G148700' => 'gra', 'Gorai.002G257300' => 'gra', 'Gorai.003G130000' => 'gra', 'Gorai.003G130100' => 'gra', 'Gorai.004G005300' => 'gra', 'Gorai.007G376500' => 'gra', 'Gorai.012G104700' => 'gra', 'GSVIVG01017946001' => 'vvi', 'GSVIVG01024928001' => 'vvi', 'GSVIVG01028227001' => 'vvi', 'GSVIVG01034151001' => 'vvi', 'HanXRQChr05g0135031' => 'han', 'HanXRQChr05g0135041' => 'han', 'HanXRQChr05g0140021' => 'han', 'HanXRQChr06g0178981' => 'han', 'HanXRQChr07g0188251' => 'han', 'HanXRQChr08g0235311' => 'han', 'HanXRQChr09g0271011' => 'han', 'HanXRQChr10g0293321' => 'han', 'HanXRQChr13g0388171' => 'han', 'Haze_00916' => 'cav', 'Haze_05063' => 'cav', 'Haze_20814' => 'cav', 'Haze_24128' => 'cav', 'Hma1.2p1_0745F.1_g212010' => 'hma', 'Hma1.2p1_0757F.1_g213260' => 'hma', 'Hma1.2p1_0936F.1_g238840' => 'hma', 'Hma1.2p1_1735F.1_g299890' => 'hma', 'Hma1.2p1_1861F.1_g305685' => 'hma', 'HPP92_003397' => 'vpl', 'HPP92_012597' => 'vpl', 'HPP92_015520' => 'vpl', 'HPP92_015539' => 'vpl', 'HPP92_020373' => 'vpl', 'Hund04938' => 'sun', 'Hund10677' => 'sun', 'Hund11033' => 'sun', 'Hund12155' => 'sun', 'Lalb_Chr01g0022551' => 'lal', 'Lalb_Chr03g0042341' => 'lal', 'Lalb_Chr07g0192931' => 'lal', 'Lalb_Chr12g0209551' => 'lal', 'Lalb_Chr19g0125251' => 'lal', 'Lalb_Chr19g0137891' => 'lal', 'Lalb_Chr21g0304641' => 'lal', 'Lalb_Chr21g0309881' => 'lal', 'Lj1A5T12' => 'lonja', 'Lj1C148G10' => 'lonja', 'Lj2A93T83' => 'lonja', 'Lj3A738G68' => 'lonja', 'Lj3C966T1' => 'lonja', 'Lj3g0018958' => 'lja', 'Lj3g0021831' => 'lja', 'Lj3g0025443' => 'lja', 'Lj4g0026809' => 'lja', 'Lj5g0012558' => 'lja', 'Lj5g0021586' => 'lja', 'Lsat_1_v5_gn_5_156840' => 'lsa', 'Lsat_1_v5_gn_8_73460' => 'lsa', 'Lsat_1_v5_gn_8_73481' => 'lsa', 'Lsat_1_v5_gn_9_31601' => 'lsa', 'Lsat_1_v5_gn_9_77320' => 'lsa', 'Manes.01G171300' => 'mes', 'Manes.01G171400' => 'mes', 'Manes.01G236100' => 'mes', 'Manes.02G130500' => 'mes', 'Manes.02G130600' => 'mes', 'Manes.03G180200' => 'mes', 'Manes.05G007000' => 'mes', 'Manes.08G084400' => 'mes', 'Manes.09G092600' => 'mes', 'Manes.15G027900' => 'mes', 'MBI04_g40948_MAGBIO' => 'mbi', 'MBI14_g12123_MAGBIO' => 'mbi', 'MBI18_g28915_MAGBIO' => 'mbi', 'MCO09G053' => 'mco', 'MCO11G782' => 'mco', 'MCO15G215' => 'mco', 'MD03G1088500' => 'mdo', 'MD03G1088600' => 'mdo', 'MD04G1130800' => 'mdo', 'MD09G1291700' => 'mdo', 'MD11G1097500' => 'mdo', 'MD11G1097600' => 'mdo', 'MD12G1143900' => 'mdo', 'MD13G1191400' => 'mdo', 'MD16G1191500' => 'mdo', 'Medtr1g085570' => 'mtr', 'Medtr1g104610' => 'mtr', 'Medtr2g097520' => 'mtr', 'Medtr4g021800' => 'mtr', 'Medtr4g021825' => 'mtr', 'Medtr4g064270' => 'mtr', 'Medtr4g064380' => 'mtr', 'Medtr7g062150' => 'mtr', 'MELO3C003138.2' => 'cme', 'MELO3C005187.2' => 'cme', 'MELO3C009252.2' => 'cme', 'MELO3C014481.2' => 'cme', 'MELO3C020616.2' => 'cme', 'MELO3C020617.2' => 'cme', 'MELO3C020618.2' => 'cme', 'Migut.G00328' => 'egut', 'Migut.J00320' => 'egut', 'Migut.L01000' => 'egut', 'Migut.L01953' => 'egut', 'MSTRG.10253' => 'ama', 'MSTRG.19077' => 'ama', 'MSTRG.26780' => 'ama', 'MSTRG.4023' => 'ama', 'MSTRG.5655' => 'ama', 'MSTRG.9992' => 'ama', 'Nitab4.5_0000043g0310' => 'nta', 'Nitab4.5_0000463g0080' => 'nta', 'Nitab4.5_0000705g0170' => 'nta', 'Nitab4.5_0001326g0060' => 'nta', 'Nitab4.5_0001628g0030' => 'nta', 'Nitab4.5_0002103g0110' => 'nta', 'Nitab4.5_0002946g0030' => 'nta', 'Nitab4.5_0004639g0030' => 'nta', 'Nn2g11149' => 'nnu', 'Nn2g13389' => 'nnu', 'Nn4g25326' => 'nnu', 'Nn4g26290' => 'nnu', 'Nn5g29865' => 'nnu', 'Oeu004163.1' => 'oeu', 'Oeu006901.1' => 'oeu', 'Oeu010096.1' => 'oeu', 'Oeu024340.1' => 'oeu', 'Oeu048369.1' => 'oeu', 'Os01g0973000' => 'osa', 'Os03g0273800' => 'osa', 'Os03g0701200' => 'osa', 'Os03g0834050' => 'osa', 'Os07g0634400' => 'osa', 'Peaxi162Scf00092g01414' => 'pax', 'Peaxi162Scf00165g00818' => 'pax', 'Peaxi162Scf00309g00516' => 'pax', 'Peaxi162Scf00774g00218' => 'pax', 'PGR004G1824' => 'pgr', 'PGR004G2606' => 'pgr', 'PGR031G2716' => 'pgr', 'PGR102G2460' => 'pgr', 'PGR142G2599' => 'pgr', 'PGSC0003DMG400000843' => 'stu', 'PGSC0003DMG400008829' => 'stu', 'PGSC0003DMG400030418' => 'stu', 'PGSC0003DMG400031834' => 'stu', 'PGSC0003DMG401028300' => 'stu', 'PGSC0003DMG402028300' => 'stu', 'Phvul.001G219300' => 'pvu', 'Phvul.007G056000' => 'pvu', 'Phvul.007G208000' => 'pvu', 'Phvul.008G119500' => 'pvu', 'Phvul.010G011200' => 'pvu', 'Phvul.010G014800' => 'pvu', 'Phvul.011G062900' => 'pvu', 'Phvul.L007043' => 'pvu', 'Potri.001G242300' => 'ptr', 'Potri.002G185300' => 'ptr', 'Potri.006G086900' => 'ptr', 'Potri.008G151700' => 'ptr', 'Potri.009G033500' => 'ptr', 'Potri.010G089300' => 'ptr', 'Potri.014G110800' => 'ptr', 'Pp3c27_8130' => 'ppa', 'Pp3c6_27410' => 'ppa', 'PRCOL_00001659' => 'pco', 'PRCOL_00001927' => 'pco', 'PRCOL_00003649' => 'pco', 'Prupe.1G011600' => 'ppe', 'Prupe.3G000800' => 'ppe', 'Prupe.3G001100' => 'ppe', 'Prupe.6G072700' => 'ppe', 'Prupe.6G072800' => 'ppe', 'Prupe.6G257300' => 'ppe', 'Prupe.8G033000' => 'ppe', 'Psat0s2633g0080' => 'psa', 'Psat0s3396g0080' => 'psa', 'Psat0s3396g0200' => 'psa', 'Psat3g139080' => 'psa', 'Psat5g285080' => 'psa', 'Psat6g157760' => 'psa', 'Psat6g208440' => 'psa', 'Psat7g215320' => 'psa', 'Psat7g215400' => 'psa', 'Psat7g235600' => 'psa', 'Psat7g235760' => 'psa', 'PSO063G4603' => 'pso', 'PSO210G0182' => 'pso', 'PSO210G0196' => 'pso', 'PSO339G0394' => 'pso', 'PSO339G4127' => 'pso', 'PSO513G0064' => 'pso', 'PSO761G0079' => 'pso', 'QL01p031003' => 'qlo', 'QL01p031078' => 'qlo', 'QL06p003004' => 'qlo', 'QL07p048731' => 'qlo', 'QL09p037427' => 'qlo', 'RcHm_v2.0_Chr3g0466361' => 'rch', 'RcHm_v2.0_Chr3g0485571' => 'rch', 'RcHm_v2.0_Chr4g0416551' => 'rch', 'RcHm_v2.0_Chr5g0065831' => 'rch', 'Rhsim01G0230500' => 'rsi', 'Rhsim05G0194000' => 'rsi', 'Rhsim08G0250400' => 'rsi', 'Sabra02G0131000' => 'sbr', 'Sabra06G0066300' => 'sbr', 'Sabra08G0115500' => 'sbr', 'Sabra09G0023900' => 'sbr', 'Sabra10G0054000' => 'sbr', 'Sabra14G0081500' => 'sbr', 'Sabra16G0147100' => 'sbr', 'SalBow2G2957' => 'sbo', 'SalBow4G3320' => 'sbo', 'SalBow8G1894' => 'sbo', 'Sc07g0007950' => 'sci', 'Sc12g0001360' => 'sci', 'Sc13g0004330' => 'sci', 'Sc20g0005010' => 'sci', 'Sed0000361' => 'sed', 'Sed0001706' => 'sed', 'Sed0002422' => 'sed', 'Sed0004029' => 'sed', 'Sed0004602' => 'sed', 'Sed0004943' => 'sed', 'Sed0008646' => 'sed', 'Sed0023313' => 'sed', 'Sed0024843' => 'sed', 'SEGI_00081' => 'sgi', 'SEGI_00947' => 'sgi', 'SEGI_04046' => 'sgi', 'SEGI_06880' => 'sgi', 'SEGI_09736' => 'sgi', 'SEGI_12741' => 'sgi', 'SEGI_14530' => 'sgi', 'SEGI_20705' => 'sgi', 'SEGI_26088' => 'sgi', 'SEGI_28323' => 'sgi', 'SEGI_33343' => 'sgi', 'SGA_v2.0_scaffold126G33775' => 'sas', 'SGA_v2.0_scaffold2G01337' => 'sas', 'SGA_v2.0_scaffold38G15006' => 'sas', 'SGA_v2.0_scaffold39G15264' => 'sas', 'SGA_v2.0_scaffold453G51880' => 'sas', 'SHI12696' => 'shi', 'SMO367G1096' => 'smo', 'Solyc01g068630.3' => 'sly', 'Solyc05g011880.3' => 'sly', 'Solyc06g076300.3' => 'sly', 'Solyc09g010940.4' => 'sly', 'Solyc09g075890.3' => 'sly', 'Sopen01g030560' => 'spe', 'Sopen05g006630' => 'spe', 'Sopen06g032720' => 'spe', 'Sopen09g005660' => 'spe', 'Sopen09g030690' => 'spe', 'Sp4g14540' => 'spa', 'Sp4g20030' => 'spa', 'Sp5g01320' => 'spa', 'Sp6g21170' => 'spa', 'Sp6g21180' => 'spa', 'Sp6g21190' => 'spa', 'Sp6g40220' => 'spa', 'TAR362G0122' => 'tar', 'TAR362G1338' => 'tar', 'TAR369G0590' => 'tar', 'TAR371G0824' => 'tar', 'TAR622G1429' => 'tar', 'TAR623G0734' => 'tar', 'TAR625G0441' => 'tar', 'TAR629G0976' => 'tar', 'TAR633G1195' => 'tar', 'TAR636G2660' => 'tar', 'THA.LOC104799440' => 'tha', 'THA.LOC104800966' => 'tha', 'THA.LOC104806559' => 'tha', 'THA.LOC104810765' => 'tha', 'THA.LOC104816266' => 'tha', 'THA.LOC104817419' => 'tha', 'THA.LOC104827021' => 'tha', 'Thecc.01G327400' => 'tca', 'Thecc.04G229200' => 'tca', 'Thecc.05G037400' => 'tca', 'Thecc.09G318600' => 'tca', 'Thecc.09G318700' => 'tca', 'Thhalv10006238m.g' => 'esa', 'Thhalv10014321m.g' => 'esa', 'Thhalv10014335m.g' => 'esa', 'Thhalv10015826m.g' => 'esa', 'Thhalv10017107m.g' => 'esa', 'Thhalv10017180m.g' => 'esa', 'Thhalv10029339m.g' => 'esa', 'TPR.G1699' => 'tpr', 'TPR.G23609' => 'tpr', 'TPR.G3081' => 'tpr', 'TPR.G40397' => 'tpr', 'TPR.G5522' => 'tpr', 'TPR.G5618' => 'tpr', 'TPR.G5626' => 'tpr', 'TWI09G1632' => 'twi', 'TWI23G1230' => 'twi', 'TWI53G1064' => 'twi', 'TWI59G0751' => 'twi', 'TWI74G0947' => 'twi', 'TWI77G0337' => 'twi', 'TWI79G1254' => 'twi', 'unitig_0.g2341' => 'ugi', 'unitig_26.g10006' => 'ugi', 'unitig_26.g10008' => 'ugi', 'unitig_26.g9192' => 'ugi', 'vmacro14547' => 'vma', 'vmacro15333' => 'vma', 'vmacro18743' => 'vma', 'vmacro20166' => 'vma', 'VMungo0331G0523' => 'vmu', 'VMungo0331G1202' => 'vmu', 'VMungo0720G1228' => 'vmu', 'VMungo0720G1514' => 'vmu', 'VMungo1080G0169' => 'vmu', 'VMungo1127G1475' => 'vmu', 'VMungo1383G1208' => 'vmu', 'VMungo1383G1698' => 'vmu', 'Zm00001eb012270' => 'zma', 'Zm00001eb054100' => 'zma', 'Zm00001eb063350' => 'zma', 'Zm00001eb328560' => 'zma', 'Zm00001eb342820' => 'zma', 'Zm00001eb362210' => 'zma', 'Zm00001eb397730' => 'zma', 'Zm00001eb399750' => 'zma' ) $gf_id = 'HOM05D000959' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000959' ) $data_identifier = 'HOM05D000959' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 5, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 5, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 10, 'mbi' => (int) 3, 'mco' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 2, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 3, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 11, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399750' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000959', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '622', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p07100' => 'bna', 'A03p11720' => 'bna', 'A05p08300' => 'bna', 'A05p13380' => 'bna', 'A09p54130' => 'bna', 'A10p16690' => 'bna', 'A10p16700' => 'bna', 'A10p33390' => 'bna', 'Aa31LG10G16020' => 'aar', 'Aa31LG1G11810' => 'aar', 'Aa31LG1G11830' => 'aar', 'Aa31LG1G22510' => 'aar', 'Aa31LG5G4890' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5793' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2310' => 'aag', 'Actinidia08499' => 'ach', 'Actinidia11262' => 'ach', 'Actinidia23926' => 'ach', 'Actinidia34420' => 'ach', 'Actinidia36970' => 'ach', 'Ah.02g111220' => 'amhyb', 'Ah.15g097750' => 'amhyb', 'AL4G27500' => 'aly', 'AL6G11470' => 'aly', 'AL8G35950' => 'aly', 'AL8G35960' => 'aly', 'AL8G35970' => 'aly', 'Aqoxy1G00912' => 'aox', 'Aqoxy2G02253' => 'aox', 'Aqoxy2G02411' => 'aox', 'Aqoxy5G00485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BZ66YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K8ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM4FUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6BF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HFV7XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25JBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0YNNV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MAKK6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P70IT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP2Z6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V61LZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YWP64R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3S9AI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7PGHH' => 'arhy', 'AT2G32150' => 'ath', 'AT3G62040' => 'ath', 'AT5G02230' => 'ath', 'AT5G59480' => 'ath', 'AT5G59490' => 'ath', 'ATR0332G060' => 'atr', 'ATR0559G190' => 'atr', 'ATR0693G294' => 'atr', 'Atru.chr3.3975' => 'acertr', 'Atru.chr3.3976' => 'acertr', 'Atru.chr3.3977' => 'acertr', 'Atru.chr4.2498' => 'acertr', 'Atru.chr5.838' => 'acertr', 'Atru.chr8.1990' => 'acertr', 'Atru.chr8.1991' => 'acertr', 'Atru.chr8.1992' => 'acertr', 'AUR62001759' => 'cqu', 'AUR62009545' => 'cqu', 'AUR62010474' => 'cqu', 'AUR62025820' => 'cqu', 'AUR62030422' => 'cqu', 'AUR62033605' => 'cqu', 'AUR62038615' => 'cqu', 'AUR62041347' => 'cqu', 'BcaB01g04574' => 'bca', 'BcaB02g09263' => 'bca', 'BcaB02g10453' => 'bca', 'BcaB05g22513' => 'bca', 'BcaB08g36253' => 'bca', 'BcaB08g36254' => 'bca', 'BcaC01g06519' => 'bca', 'BcaC02g11889' => 'bca', 'BcaC03g14010' => 'bca', 'BcaC03g18439' => 'bca', 'BcaC04g19765' => 'bca', 'BcaC09g48432' => 'bca', 'BcaNung07302' => 'bca', 'BolC2t06040H' => 'bol', 'BolC2t07346H' => 'bol', 'BolC3t13817H' => 'bol', 'BolC4t22625H' => 'bol', 'BolC4t23297H' => 'bol', 'BolC8t51278H' => 'bol', 'BolC9t58050H' => 'bol', 'BolC9t58051H' => 'bol', 'BolC9t60163H' => 'bol', 'BraA02t04712Z' => 'bra', 'BraA02t05791Z' => 'bra', 'BraA03t10483Z' => 'bra', 'BraA05t19795Z' => 'bra', 'BraA05t20276Z' => 'bra', 'BraA09t40827Z' => 'bra', 'BraA10t43750Z' => 'bra', 'BraA10t43751Z' => 'bra', 'BraA10t45370Z' => 'bra', 'C02p00400' => 'bna', 'C02p12460' => 'bna', 'C03p13680' => 'bna', 'C04p10270' => 'bna', 'C04p17500' => 'bna', 'C08p37010' => 'bna', 'C09p51880' => 'bna', 'C09p51890' => 'bna', 'C09p74300' => 'bna', 'CAN.G179.26' => 'can', 'CAN.G3384.1' => 'can', 'CAN.G394.68' => 'can', 'CAN.G907.13' => 'can', 'CANSAT11G0012' => 'cansat', 'CANSAT25G1586' => 'cansat', 'CANSAT35G0735' => 'cansat', 'CANSAT54G0556' => 'cansat', 'CANSAT64G0356' => 'cansat', 'CANSAT78G2042' => 'cansat', 'CARHR125920' => 'chi', 'CARHR131910' => 'chi', 'CARHR172390' => 'chi', 'CARHR211140' => 'chi', 'CARHR285850' => 'chi', 'CARHR285860' => 'chi', 'Carub.0004s1347' => 'cru', 'Carub.0004s1960' => 'cru', 'Carub.0005s2880' => 'cru', 'Carub.0006s0107' => 'cru', 'Carub.0008s2015' => 'cru', 'Carub.0008s2016' => 'cru', 'Carub.0008s2017' => 'cru', 'Ca_01315_v3' => 'car', 'Ca_05063_v3' => 'car', 'Ca_10231_v3' => 'car', 'Ca_10913_v3' => 'car', 'Ca_19156_v3' => 'car', 'Ca_23644_v3' => 'car', 'Ca_26735_v3' => 'car', 'Cc01_g13130' => 'ccan', 'Cc02_g21690' => 'ccan', 'Cc03_g03600' => 'ccan', 'Cc06_g02510' => 'ccan', 'CDE02G1265' => 'cde', 'CDE05G0415' => 'cde', 'CDE08G1082' => 'cde', 'Cfa005780' => 'cfa', 'Cfa011522' => 'cfa', 'Cfa011523' => 'cfa', 'Cfa015627' => 'cfa', 'Cfa017359' => 'cfa', 'Ciclev10005687m.g' => 'ccl', 'Ciclev10012173m.g' => 'ccl', 'Ciclev10021621m.g' => 'ccl', 'Ciclev10028968m.g' => 'ccl', 'Ciclev10029907m.g' => 'ccl', 'CiPaw.01G164800' => 'cil', 'CiPaw.07G083700' => 'cil', 'CiPaw.07G127000' => 'cil', 'CiPaw.07G136900' => 'cil', 'CiPaw.08G081700' => 'cil', 'CiPaw.09G194600' => 'cil', 'CiPaw.10G146500' => 'cil', 'CiPaw.13G091500' => 'cil', 'CiPaw.13G091600' => 'cil', 'ClCG00G003390' => 'cla', 'ClCG01G007220' => 'cla', 'ClCG03G001370' => 'cla', 'ClCG04G008100' => 'cla', 'ClCG06G006110' => 'cla', 'ClCG06G006130' => 'cla', 'ClCG10G021210' => 'cla', 'COL.COLO4_07648' => 'col', 'COL.COLO4_07650' => 'col', 'COL.COLO4_07651' => 'col', 'COL.COLO4_14780' => 'col', 'COL.COLO4_18546' => 'col', 'COL.COLO4_18547' => 'col', 'COL.COLO4_23103' => 'col', 'COL.COLO4_30419' => 'col', 'COL.COLO4_34232' => 'col', 'Cpa.g.sc169.20' => 'cpa', 'Cpa.g.sc57.45' => 'cpa', 'Cpa.g.sc58.124' => 'cpa', 'Cpa.g.sc58.125' => 'cpa', 'Cpa.g.sc81.118' => 'cpa', 'Cpa.g.sc81.119' => 'cpa', 'Cre12.g524700' => 'cre', 'CsaV3_1G034430' => 'csa', 'CsaV3_1G034440' => 'csa', 'CsaV3_1G034450' => 'csa', 'CsaV3_3G034830' => 'csa', 'CsaV3_4G025090' => 'csa', 'CsaV3_5G018660' => 'csa', 'CsaV3_6G038160' => 'csa', 'CSS0003447' => 'camsi', 'CSS0017840' => 'camsi', 'CSS0019260' => 'camsi', 'CSS0040375' => 'camsi', 'CSS0042533' => 'camsi', 'DCAR_005960' => 'dca', 'DCAR_012104' => 'dca', 'DCAR_012105' => 'dca', 'DCAR_012293' => 'dca', 'DCAR_015632' => 'dca', 'DCAR_024602' => 'dca', 'DCAR_028752' => 'dca', 'Dinv06261' => 'din', 'Dinv13982' => 'din', 'Dinv17029' => 'din', 'Dinv18463' => 'din', 'Dinv33181' => 'din', 'Dinv35585' => 'din', 'Dinv37161' => 'din', 'Dinv42977' => 'din', 'Dinv43122' => 'din', 'Dinv44517' => 'din', 'Duzib093G0256' => 'dzi', 'Duzib106G1254' => 'dzi', 'Duzib128G1789' => 'dzi', 'Duzib133G0633' => 'dzi', 'Duzib138G0510' => 'dzi', 'Duzib150G1084' => 'dzi', 'Duzib168G0488' => 'dzi', 'Duzib168G1523' => 'dzi', 'Duzib170G0133' => 'dzi', 'ECA234G1433' => 'eca', 'ECA236G1432' => 'eca', 'ECA236G2256' => 'eca', 'ECA236G2365' => 'eca', 'ECA236G4830' => 'eca', 'ECA248G1505' => 'eca', 'EL10Ac3g06431' => 'bvu', 'EL10Ac5g12577' => 'bvu', 'EL10Ac6g13533' => 'bvu', 'EL10Ac7g16045' => 'bvu', 'Eucgr.A01281' => 'egr', 'Eucgr.B02326' => 'egr', 'Eucgr.H03532' => 'egr', 'Eucgr.K00553' => 'egr', 'Eucgr.K03116' => 'egr', 'FAN02G3963' => 'fan', 'FAN05G0438' => 'fan', 'FAN09G2434' => 'fan', 'FAN12G3984' => 'fan', 'FAN14G0798' => 'fan', 'FAN17G0652' => 'fan', 'FAN19G1988' => 'fan', 'FAN22G0632' => 'fan', 'FAN23G0387' => 'fan', 'FAN26G1323' => 'fan', 'FAN28G0666' => 'fan', 'FvH4_1g26080' => 'fve', 'FvH4_3g36780' => 'fve', 'FvH4_4g15270' => 'fve', 'FvH4_6g13490' => 'fve', 'Glyma.01G098700' => 'gma', 'Glyma.03G065900' => 'gma', 'Glyma.03G073754' => 'gma', 'Glyma.03G073758' => 'gma', 'Glyma.03G083200' => 'gma', 'Glyma.03G225500' => 'gma', 'Glyma.05G037766' => 'gma', 'Glyma.07G133500' => 'gma', 'Glyma.10G139400' => 'gma', 'Glyma.10G248900' => 'gma', 'Glyma.11G137800' => 'gma', 'Glyma.12G061300' => 'gma', 'Glyma.13G337900' => 'gma', 'Glyma.15G036600' => 'gma', 'Glyma.18G182800' => 'gma', 'Glyma.19G222500' => 'gma', 'Glyma.20G144800' => 'gma', 'Gohir.A01G222000' => 'ghi', 'Gohir.A03G044000' => 'ghi', 'Gohir.A03G044100' => 'ghi', 'Gohir.A04G083100' => 'ghi', 'Gohir.A07G127200' => 'ghi', 'Gohir.A07G132400' => 'ghi', 'Gohir.A08G000700' => 'ghi', 'Gohir.A11G327300' => 'ghi', 'Gohir.D01G211500' => 'ghi', 'Gohir.D03G123400' => 'ghi', 'Gohir.D03G123500' => 'ghi', 'Gohir.D04G121800' => 'ghi', 'Gohir.D07G131500' => 'ghi', 'Gohir.D07G136600' => 'ghi', 'Gohir.D08G011600' => 'ghi', 'Gohir.D11G346200' => 'ghi', 'Gorai.001G142800' => 'gra', 'Gorai.001G148700' => 'gra', 'Gorai.002G257300' => 'gra', 'Gorai.003G130000' => 'gra', 'Gorai.003G130100' => 'gra', 'Gorai.004G005300' => 'gra', 'Gorai.007G376500' => 'gra', 'Gorai.012G104700' => 'gra', 'GSVIVG01017946001' => 'vvi', 'GSVIVG01024928001' => 'vvi', 'GSVIVG01028227001' => 'vvi', 'GSVIVG01034151001' => 'vvi', 'HanXRQChr05g0135031' => 'han', 'HanXRQChr05g0135041' => 'han', 'HanXRQChr05g0140021' => 'han', 'HanXRQChr06g0178981' => 'han', 'HanXRQChr07g0188251' => 'han', 'HanXRQChr08g0235311' => 'han', 'HanXRQChr09g0271011' => 'han', 'HanXRQChr10g0293321' => 'han', 'HanXRQChr13g0388171' => 'han', 'Haze_00916' => 'cav', 'Haze_05063' => 'cav', 'Haze_20814' => 'cav', 'Haze_24128' => 'cav', 'Hma1.2p1_0745F.1_g212010' => 'hma', 'Hma1.2p1_0757F.1_g213260' => 'hma', 'Hma1.2p1_0936F.1_g238840' => 'hma', 'Hma1.2p1_1735F.1_g299890' => 'hma', 'Hma1.2p1_1861F.1_g305685' => 'hma', 'HPP92_003397' => 'vpl', 'HPP92_012597' => 'vpl', 'HPP92_015520' => 'vpl', 'HPP92_015539' => 'vpl', 'HPP92_020373' => 'vpl', 'Hund04938' => 'sun', 'Hund10677' => 'sun', 'Hund11033' => 'sun', 'Hund12155' => 'sun', 'Lalb_Chr01g0022551' => 'lal', 'Lalb_Chr03g0042341' => 'lal', 'Lalb_Chr07g0192931' => 'lal', 'Lalb_Chr12g0209551' => 'lal', 'Lalb_Chr19g0125251' => 'lal', 'Lalb_Chr19g0137891' => 'lal', 'Lalb_Chr21g0304641' => 'lal', 'Lalb_Chr21g0309881' => 'lal', 'Lj1A5T12' => 'lonja', 'Lj1C148G10' => 'lonja', 'Lj2A93T83' => 'lonja', 'Lj3A738G68' => 'lonja', 'Lj3C966T1' => 'lonja', 'Lj3g0018958' => 'lja', 'Lj3g0021831' => 'lja', 'Lj3g0025443' => 'lja', 'Lj4g0026809' => 'lja', 'Lj5g0012558' => 'lja', 'Lj5g0021586' => 'lja', 'Lsat_1_v5_gn_5_156840' => 'lsa', 'Lsat_1_v5_gn_8_73460' => 'lsa', 'Lsat_1_v5_gn_8_73481' => 'lsa', 'Lsat_1_v5_gn_9_31601' => 'lsa', 'Lsat_1_v5_gn_9_77320' => 'lsa', 'Manes.01G171300' => 'mes', 'Manes.01G171400' => 'mes', 'Manes.01G236100' => 'mes', 'Manes.02G130500' => 'mes', 'Manes.02G130600' => 'mes', 'Manes.03G180200' => 'mes', 'Manes.05G007000' => 'mes', 'Manes.08G084400' => 'mes', 'Manes.09G092600' => 'mes', 'Manes.15G027900' => 'mes', 'MBI04_g40948_MAGBIO' => 'mbi', 'MBI14_g12123_MAGBIO' => 'mbi', 'MBI18_g28915_MAGBIO' => 'mbi', 'MCO09G053' => 'mco', 'MCO11G782' => 'mco', 'MCO15G215' => 'mco', 'MD03G1088500' => 'mdo', 'MD03G1088600' => 'mdo', 'MD04G1130800' => 'mdo', 'MD09G1291700' => 'mdo', 'MD11G1097500' => 'mdo', 'MD11G1097600' => 'mdo', 'MD12G1143900' => 'mdo', 'MD13G1191400' => 'mdo', 'MD16G1191500' => 'mdo', 'Medtr1g085570' => 'mtr', 'Medtr1g104610' => 'mtr', 'Medtr2g097520' => 'mtr', 'Medtr4g021800' => 'mtr', 'Medtr4g021825' => 'mtr', 'Medtr4g064270' => 'mtr', 'Medtr4g064380' => 'mtr', 'Medtr7g062150' => 'mtr', 'MELO3C003138.2' => 'cme', 'MELO3C005187.2' => 'cme', 'MELO3C009252.2' => 'cme', 'MELO3C014481.2' => 'cme', 'MELO3C020616.2' => 'cme', 'MELO3C020617.2' => 'cme', 'MELO3C020618.2' => 'cme', 'Migut.G00328' => 'egut', 'Migut.J00320' => 'egut', 'Migut.L01000' => 'egut', 'Migut.L01953' => 'egut', 'MSTRG.10253' => 'ama', 'MSTRG.19077' => 'ama', 'MSTRG.26780' => 'ama', 'MSTRG.4023' => 'ama', 'MSTRG.5655' => 'ama', 'MSTRG.9992' => 'ama', 'Nitab4.5_0000043g0310' => 'nta', 'Nitab4.5_0000463g0080' => 'nta', 'Nitab4.5_0000705g0170' => 'nta', 'Nitab4.5_0001326g0060' => 'nta', 'Nitab4.5_0001628g0030' => 'nta', 'Nitab4.5_0002103g0110' => 'nta', 'Nitab4.5_0002946g0030' => 'nta', 'Nitab4.5_0004639g0030' => 'nta', 'Nn2g11149' => 'nnu', 'Nn2g13389' => 'nnu', 'Nn4g25326' => 'nnu', 'Nn4g26290' => 'nnu', 'Nn5g29865' => 'nnu', 'Oeu004163.1' => 'oeu', 'Oeu006901.1' => 'oeu', 'Oeu010096.1' => 'oeu', 'Oeu024340.1' => 'oeu', 'Oeu048369.1' => 'oeu', 'Os01g0973000' => 'osa', 'Os03g0273800' => 'osa', 'Os03g0701200' => 'osa', 'Os03g0834050' => 'osa', 'Os07g0634400' => 'osa', 'Peaxi162Scf00092g01414' => 'pax', 'Peaxi162Scf00165g00818' => 'pax', 'Peaxi162Scf00309g00516' => 'pax', 'Peaxi162Scf00774g00218' => 'pax', 'PGR004G1824' => 'pgr', 'PGR004G2606' => 'pgr', 'PGR031G2716' => 'pgr', 'PGR102G2460' => 'pgr', 'PGR142G2599' => 'pgr', 'PGSC0003DMG400000843' => 'stu', 'PGSC0003DMG400008829' => 'stu', 'PGSC0003DMG400030418' => 'stu', 'PGSC0003DMG400031834' => 'stu', 'PGSC0003DMG401028300' => 'stu', 'PGSC0003DMG402028300' => 'stu', 'Phvul.001G219300' => 'pvu', 'Phvul.007G056000' => 'pvu', 'Phvul.007G208000' => 'pvu', 'Phvul.008G119500' => 'pvu', 'Phvul.010G011200' => 'pvu', 'Phvul.010G014800' => 'pvu', 'Phvul.011G062900' => 'pvu', 'Phvul.L007043' => 'pvu', 'Potri.001G242300' => 'ptr', 'Potri.002G185300' => 'ptr', 'Potri.006G086900' => 'ptr', 'Potri.008G151700' => 'ptr', 'Potri.009G033500' => 'ptr', 'Potri.010G089300' => 'ptr', 'Potri.014G110800' => 'ptr', 'Pp3c27_8130' => 'ppa', 'Pp3c6_27410' => 'ppa', 'PRCOL_00001659' => 'pco', 'PRCOL_00001927' => 'pco', 'PRCOL_00003649' => 'pco', 'Prupe.1G011600' => 'ppe', 'Prupe.3G000800' => 'ppe', 'Prupe.3G001100' => 'ppe', 'Prupe.6G072700' => 'ppe', 'Prupe.6G072800' => 'ppe', 'Prupe.6G257300' => 'ppe', 'Prupe.8G033000' => 'ppe', 'Psat0s2633g0080' => 'psa', 'Psat0s3396g0080' => 'psa', 'Psat0s3396g0200' => 'psa', 'Psat3g139080' => 'psa', 'Psat5g285080' => 'psa', 'Psat6g157760' => 'psa', 'Psat6g208440' => 'psa', 'Psat7g215320' => 'psa', 'Psat7g215400' => 'psa', 'Psat7g235600' => 'psa', 'Psat7g235760' => 'psa', 'PSO063G4603' => 'pso', 'PSO210G0182' => 'pso', 'PSO210G0196' => 'pso', 'PSO339G0394' => 'pso', 'PSO339G4127' => 'pso', 'PSO513G0064' => 'pso', 'PSO761G0079' => 'pso', 'QL01p031003' => 'qlo', 'QL01p031078' => 'qlo', 'QL06p003004' => 'qlo', 'QL07p048731' => 'qlo', 'QL09p037427' => 'qlo', 'RcHm_v2.0_Chr3g0466361' => 'rch', 'RcHm_v2.0_Chr3g0485571' => 'rch', 'RcHm_v2.0_Chr4g0416551' => 'rch', 'RcHm_v2.0_Chr5g0065831' => 'rch', 'Rhsim01G0230500' => 'rsi', 'Rhsim05G0194000' => 'rsi', 'Rhsim08G0250400' => 'rsi', 'Sabra02G0131000' => 'sbr', 'Sabra06G0066300' => 'sbr', 'Sabra08G0115500' => 'sbr', 'Sabra09G0023900' => 'sbr', 'Sabra10G0054000' => 'sbr', 'Sabra14G0081500' => 'sbr', 'Sabra16G0147100' => 'sbr', 'SalBow2G2957' => 'sbo', 'SalBow4G3320' => 'sbo', 'SalBow8G1894' => 'sbo', 'Sc07g0007950' => 'sci', 'Sc12g0001360' => 'sci', 'Sc13g0004330' => 'sci', 'Sc20g0005010' => 'sci', 'Sed0000361' => 'sed', 'Sed0001706' => 'sed', 'Sed0002422' => 'sed', 'Sed0004029' => 'sed', 'Sed0004602' => 'sed', 'Sed0004943' => 'sed', 'Sed0008646' => 'sed', 'Sed0023313' => 'sed', 'Sed0024843' => 'sed', 'SEGI_00081' => 'sgi', 'SEGI_00947' => 'sgi', 'SEGI_04046' => 'sgi', 'SEGI_06880' => 'sgi', 'SEGI_09736' => 'sgi', 'SEGI_12741' => 'sgi', 'SEGI_14530' => 'sgi', 'SEGI_20705' => 'sgi', 'SEGI_26088' => 'sgi', 'SEGI_28323' => 'sgi', 'SEGI_33343' => 'sgi', 'SGA_v2.0_scaffold126G33775' => 'sas', 'SGA_v2.0_scaffold2G01337' => 'sas', 'SGA_v2.0_scaffold38G15006' => 'sas', 'SGA_v2.0_scaffold39G15264' => 'sas', 'SGA_v2.0_scaffold453G51880' => 'sas', 'SHI12696' => 'shi', 'SMO367G1096' => 'smo', 'Solyc01g068630.3' => 'sly', 'Solyc05g011880.3' => 'sly', 'Solyc06g076300.3' => 'sly', 'Solyc09g010940.4' => 'sly', 'Solyc09g075890.3' => 'sly', 'Sopen01g030560' => 'spe', 'Sopen05g006630' => 'spe', 'Sopen06g032720' => 'spe', 'Sopen09g005660' => 'spe', 'Sopen09g030690' => 'spe', 'Sp4g14540' => 'spa', 'Sp4g20030' => 'spa', 'Sp5g01320' => 'spa', 'Sp6g21170' => 'spa', 'Sp6g21180' => 'spa', 'Sp6g21190' => 'spa', 'Sp6g40220' => 'spa', 'TAR362G0122' => 'tar', 'TAR362G1338' => 'tar', 'TAR369G0590' => 'tar', 'TAR371G0824' => 'tar', 'TAR622G1429' => 'tar', 'TAR623G0734' => 'tar', 'TAR625G0441' => 'tar', 'TAR629G0976' => 'tar', 'TAR633G1195' => 'tar', 'TAR636G2660' => 'tar', 'THA.LOC104799440' => 'tha', 'THA.LOC104800966' => 'tha', 'THA.LOC104806559' => 'tha', 'THA.LOC104810765' => 'tha', 'THA.LOC104816266' => 'tha', 'THA.LOC104817419' => 'tha', 'THA.LOC104827021' => 'tha', 'Thecc.01G327400' => 'tca', 'Thecc.04G229200' => 'tca', 'Thecc.05G037400' => 'tca', 'Thecc.09G318600' => 'tca', 'Thecc.09G318700' => 'tca', 'Thhalv10006238m.g' => 'esa', 'Thhalv10014321m.g' => 'esa', 'Thhalv10014335m.g' => 'esa', 'Thhalv10015826m.g' => 'esa', 'Thhalv10017107m.g' => 'esa', 'Thhalv10017180m.g' => 'esa', 'Thhalv10029339m.g' => 'esa', 'TPR.G1699' => 'tpr', 'TPR.G23609' => 'tpr', 'TPR.G3081' => 'tpr', 'TPR.G40397' => 'tpr', 'TPR.G5522' => 'tpr', 'TPR.G5618' => 'tpr', 'TPR.G5626' => 'tpr', 'TWI09G1632' => 'twi', 'TWI23G1230' => 'twi', 'TWI53G1064' => 'twi', 'TWI59G0751' => 'twi', 'TWI74G0947' => 'twi', 'TWI77G0337' => 'twi', 'TWI79G1254' => 'twi', 'unitig_0.g2341' => 'ugi', 'unitig_26.g10006' => 'ugi', 'unitig_26.g10008' => 'ugi', 'unitig_26.g9192' => 'ugi', 'vmacro14547' => 'vma', 'vmacro15333' => 'vma', 'vmacro18743' => 'vma', 'vmacro20166' => 'vma', 'VMungo0331G0523' => 'vmu', 'VMungo0331G1202' => 'vmu', 'VMungo0720G1228' => 'vmu', 'VMungo0720G1514' => 'vmu', 'VMungo1080G0169' => 'vmu', 'VMungo1127G1475' => 'vmu', 'VMungo1383G1208' => 'vmu', 'VMungo1383G1698' => 'vmu', 'Zm00001eb012270' => 'zma', 'Zm00001eb054100' => 'zma', 'Zm00001eb063350' => 'zma', 'Zm00001eb328560' => 'zma', 'Zm00001eb342820' => 'zma', 'Zm00001eb362210' => 'zma', 'Zm00001eb397730' => 'zma', 'Zm00001eb399750' => 'zma' ), 'gf_id' => 'HOM05D000959', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000959' ), 'data_identifier' => 'HOM05D000959', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000959', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '622', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p07100' => 'bna', 'A03p11720' => 'bna', 'A05p08300' => 'bna', 'A05p13380' => 'bna', 'A09p54130' => 'bna', 'A10p16690' => 'bna', 'A10p16700' => 'bna', 'A10p33390' => 'bna', 'Aa31LG10G16020' => 'aar', 'Aa31LG1G11810' => 'aar', 'Aa31LG1G11830' => 'aar', 'Aa31LG1G22510' => 'aar', 'Aa31LG5G4890' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5793' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2310' => 'aag', 'Actinidia08499' => 'ach', 'Actinidia11262' => 'ach', 'Actinidia23926' => 'ach', 'Actinidia34420' => 'ach', 'Actinidia36970' => 'ach', 'Ah.02g111220' => 'amhyb', 'Ah.15g097750' => 'amhyb', 'AL4G27500' => 'aly', 'AL6G11470' => 'aly', 'AL8G35950' => 'aly', 'AL8G35960' => 'aly', 'AL8G35970' => 'aly', 'Aqoxy1G00912' => 'aox', 'Aqoxy2G02253' => 'aox', 'Aqoxy2G02411' => 'aox', 'Aqoxy5G00485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BZ66YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K8ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM4FUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6BF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HFV7XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25JBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0YNNV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MAKK6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P70IT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP2Z6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V61LZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YWP64R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3S9AI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7PGHH' => 'arhy', 'AT2G32150' => 'ath', 'AT3G62040' => 'ath', 'AT5G02230' => 'ath', 'AT5G59480' => 'ath', 'AT5G59490' => 'ath', 'ATR0332G060' => 'atr', 'ATR0559G190' => 'atr', 'ATR0693G294' => 'atr', 'Atru.chr3.3975' => 'acertr', 'Atru.chr3.3976' => 'acertr', 'Atru.chr3.3977' => 'acertr', 'Atru.chr4.2498' => 'acertr', 'Atru.chr5.838' => 'acertr', 'Atru.chr8.1990' => 'acertr', 'Atru.chr8.1991' => 'acertr', 'Atru.chr8.1992' => 'acertr', 'AUR62001759' => 'cqu', 'AUR62009545' => 'cqu', 'AUR62010474' => 'cqu', 'AUR62025820' => 'cqu', 'AUR62030422' => 'cqu', 'AUR62033605' => 'cqu', 'AUR62038615' => 'cqu', 'AUR62041347' => 'cqu', 'BcaB01g04574' => 'bca', 'BcaB02g09263' => 'bca', 'BcaB02g10453' => 'bca', 'BcaB05g22513' => 'bca', 'BcaB08g36253' => 'bca', 'BcaB08g36254' => 'bca', 'BcaC01g06519' => 'bca', 'BcaC02g11889' => 'bca', 'BcaC03g14010' => 'bca', 'BcaC03g18439' => 'bca', 'BcaC04g19765' => 'bca', 'BcaC09g48432' => 'bca', 'BcaNung07302' => 'bca', 'BolC2t06040H' => 'bol', 'BolC2t07346H' => 'bol', 'BolC3t13817H' => 'bol', 'BolC4t22625H' => 'bol', 'BolC4t23297H' => 'bol', 'BolC8t51278H' => 'bol', 'BolC9t58050H' => 'bol', 'BolC9t58051H' => 'bol', 'BolC9t60163H' => 'bol', 'BraA02t04712Z' => 'bra', 'BraA02t05791Z' => 'bra', 'BraA03t10483Z' => 'bra', 'BraA05t19795Z' => 'bra', 'BraA05t20276Z' => 'bra', 'BraA09t40827Z' => 'bra', 'BraA10t43750Z' => 'bra', 'BraA10t43751Z' => 'bra', 'BraA10t45370Z' => 'bra', 'C02p00400' => 'bna', 'C02p12460' => 'bna', 'C03p13680' => 'bna', 'C04p10270' => 'bna', 'C04p17500' => 'bna', 'C08p37010' => 'bna', 'C09p51880' => 'bna', 'C09p51890' => 'bna', 'C09p74300' => 'bna', 'CAN.G179.26' => 'can', 'CAN.G3384.1' => 'can', 'CAN.G394.68' => 'can', 'CAN.G907.13' => 'can', 'CANSAT11G0012' => 'cansat', 'CANSAT25G1586' => 'cansat', 'CANSAT35G0735' => 'cansat', 'CANSAT54G0556' => 'cansat', 'CANSAT64G0356' => 'cansat', 'CANSAT78G2042' => 'cansat', 'CARHR125920' => 'chi', 'CARHR131910' => 'chi', 'CARHR172390' => 'chi', 'CARHR211140' => 'chi', 'CARHR285850' => 'chi', 'CARHR285860' => 'chi', 'Carub.0004s1347' => 'cru', 'Carub.0004s1960' => 'cru', 'Carub.0005s2880' => 'cru', 'Carub.0006s0107' => 'cru', 'Carub.0008s2015' => 'cru', 'Carub.0008s2016' => 'cru', 'Carub.0008s2017' => 'cru', 'Ca_01315_v3' => 'car', 'Ca_05063_v3' => 'car', 'Ca_10231_v3' => 'car', 'Ca_10913_v3' => 'car', 'Ca_19156_v3' => 'car', 'Ca_23644_v3' => 'car', 'Ca_26735_v3' => 'car', 'Cc01_g13130' => 'ccan', 'Cc02_g21690' => 'ccan', 'Cc03_g03600' => 'ccan', 'Cc06_g02510' => 'ccan', 'CDE02G1265' => 'cde', 'CDE05G0415' => 'cde', 'CDE08G1082' => 'cde', 'Cfa005780' => 'cfa', 'Cfa011522' => 'cfa', 'Cfa011523' => 'cfa', 'Cfa015627' => 'cfa', 'Cfa017359' => 'cfa', 'Ciclev10005687m.g' => 'ccl', 'Ciclev10012173m.g' => 'ccl', 'Ciclev10021621m.g' => 'ccl', 'Ciclev10028968m.g' => 'ccl', 'Ciclev10029907m.g' => 'ccl', 'CiPaw.01G164800' => 'cil', 'CiPaw.07G083700' => 'cil', 'CiPaw.07G127000' => 'cil', 'CiPaw.07G136900' => 'cil', 'CiPaw.08G081700' => 'cil', 'CiPaw.09G194600' => 'cil', 'CiPaw.10G146500' => 'cil', 'CiPaw.13G091500' => 'cil', 'CiPaw.13G091600' => 'cil', 'ClCG00G003390' => 'cla', 'ClCG01G007220' => 'cla', 'ClCG03G001370' => 'cla', 'ClCG04G008100' => 'cla', 'ClCG06G006110' => 'cla', 'ClCG06G006130' => 'cla', 'ClCG10G021210' => 'cla', 'COL.COLO4_07648' => 'col', 'COL.COLO4_07650' => 'col', 'COL.COLO4_07651' => 'col', 'COL.COLO4_14780' => 'col', 'COL.COLO4_18546' => 'col', 'COL.COLO4_18547' => 'col', 'COL.COLO4_23103' => 'col', 'COL.COLO4_30419' => 'col', 'COL.COLO4_34232' => 'col', 'Cpa.g.sc169.20' => 'cpa', 'Cpa.g.sc57.45' => 'cpa', 'Cpa.g.sc58.124' => 'cpa', 'Cpa.g.sc58.125' => 'cpa', 'Cpa.g.sc81.118' => 'cpa', 'Cpa.g.sc81.119' => 'cpa', 'Cre12.g524700' => 'cre', 'CsaV3_1G034430' => 'csa', 'CsaV3_1G034440' => 'csa', 'CsaV3_1G034450' => 'csa', 'CsaV3_3G034830' => 'csa', 'CsaV3_4G025090' => 'csa', 'CsaV3_5G018660' => 'csa', 'CsaV3_6G038160' => 'csa', 'CSS0003447' => 'camsi', 'CSS0017840' => 'camsi', 'CSS0019260' => 'camsi', 'CSS0040375' => 'camsi', 'CSS0042533' => 'camsi', 'DCAR_005960' => 'dca', 'DCAR_012104' => 'dca', 'DCAR_012105' => 'dca', 'DCAR_012293' => 'dca', 'DCAR_015632' => 'dca', 'DCAR_024602' => 'dca', 'DCAR_028752' => 'dca', 'Dinv06261' => 'din', 'Dinv13982' => 'din', 'Dinv17029' => 'din', 'Dinv18463' => 'din', 'Dinv33181' => 'din', 'Dinv35585' => 'din', 'Dinv37161' => 'din', 'Dinv42977' => 'din', 'Dinv43122' => 'din', 'Dinv44517' => 'din', 'Duzib093G0256' => 'dzi', 'Duzib106G1254' => 'dzi', 'Duzib128G1789' => 'dzi', 'Duzib133G0633' => 'dzi', 'Duzib138G0510' => 'dzi', 'Duzib150G1084' => 'dzi', 'Duzib168G0488' => 'dzi', 'Duzib168G1523' => 'dzi', 'Duzib170G0133' => 'dzi', 'ECA234G1433' => 'eca', 'ECA236G1432' => 'eca', 'ECA236G2256' => 'eca', 'ECA236G2365' => 'eca', 'ECA236G4830' => 'eca', 'ECA248G1505' => 'eca', 'EL10Ac3g06431' => 'bvu', 'EL10Ac5g12577' => 'bvu', 'EL10Ac6g13533' => 'bvu', 'EL10Ac7g16045' => 'bvu', 'Eucgr.A01281' => 'egr', 'Eucgr.B02326' => 'egr', 'Eucgr.H03532' => 'egr', 'Eucgr.K00553' => 'egr', 'Eucgr.K03116' => 'egr', 'FAN02G3963' => 'fan', 'FAN05G0438' => 'fan', 'FAN09G2434' => 'fan', 'FAN12G3984' => 'fan', 'FAN14G0798' => 'fan', 'FAN17G0652' => 'fan', 'FAN19G1988' => 'fan', 'FAN22G0632' => 'fan', 'FAN23G0387' => 'fan', 'FAN26G1323' => 'fan', 'FAN28G0666' => 'fan', 'FvH4_1g26080' => 'fve', 'FvH4_3g36780' => 'fve', 'FvH4_4g15270' => 'fve', 'FvH4_6g13490' => 'fve', 'Glyma.01G098700' => 'gma', 'Glyma.03G065900' => 'gma', 'Glyma.03G073754' => 'gma', 'Glyma.03G073758' => 'gma', 'Glyma.03G083200' => 'gma', 'Glyma.03G225500' => 'gma', 'Glyma.05G037766' => 'gma', 'Glyma.07G133500' => 'gma', 'Glyma.10G139400' => 'gma', 'Glyma.10G248900' => 'gma', 'Glyma.11G137800' => 'gma', 'Glyma.12G061300' => 'gma', 'Glyma.13G337900' => 'gma', 'Glyma.15G036600' => 'gma', 'Glyma.18G182800' => 'gma', 'Glyma.19G222500' => 'gma', 'Glyma.20G144800' => 'gma', 'Gohir.A01G222000' => 'ghi', 'Gohir.A03G044000' => 'ghi', 'Gohir.A03G044100' => 'ghi', 'Gohir.A04G083100' => 'ghi', 'Gohir.A07G127200' => 'ghi', 'Gohir.A07G132400' => 'ghi', 'Gohir.A08G000700' => 'ghi', 'Gohir.A11G327300' => 'ghi', 'Gohir.D01G211500' => 'ghi', 'Gohir.D03G123400' => 'ghi', 'Gohir.D03G123500' => 'ghi', 'Gohir.D04G121800' => 'ghi', 'Gohir.D07G131500' => 'ghi', 'Gohir.D07G136600' => 'ghi', 'Gohir.D08G011600' => 'ghi', 'Gohir.D11G346200' => 'ghi', 'Gorai.001G142800' => 'gra', 'Gorai.001G148700' => 'gra', 'Gorai.002G257300' => 'gra', 'Gorai.003G130000' => 'gra', 'Gorai.003G130100' => 'gra', 'Gorai.004G005300' => 'gra', 'Gorai.007G376500' => 'gra', 'Gorai.012G104700' => 'gra', 'GSVIVG01017946001' => 'vvi', 'GSVIVG01024928001' => 'vvi', 'GSVIVG01028227001' => 'vvi', 'GSVIVG01034151001' => 'vvi', 'HanXRQChr05g0135031' => 'han', 'HanXRQChr05g0135041' => 'han', 'HanXRQChr05g0140021' => 'han', 'HanXRQChr06g0178981' => 'han', 'HanXRQChr07g0188251' => 'han', 'HanXRQChr08g0235311' => 'han', 'HanXRQChr09g0271011' => 'han', 'HanXRQChr10g0293321' => 'han', 'HanXRQChr13g0388171' => 'han', 'Haze_00916' => 'cav', 'Haze_05063' => 'cav', 'Haze_20814' => 'cav', 'Haze_24128' => 'cav', 'Hma1.2p1_0745F.1_g212010' => 'hma', 'Hma1.2p1_0757F.1_g213260' => 'hma', 'Hma1.2p1_0936F.1_g238840' => 'hma', 'Hma1.2p1_1735F.1_g299890' => 'hma', 'Hma1.2p1_1861F.1_g305685' => 'hma', 'HPP92_003397' => 'vpl', 'HPP92_012597' => 'vpl', 'HPP92_015520' => 'vpl', 'HPP92_015539' => 'vpl', 'HPP92_020373' => 'vpl', 'Hund04938' => 'sun', 'Hund10677' => 'sun', 'Hund11033' => 'sun', 'Hund12155' => 'sun', 'Lalb_Chr01g0022551' => 'lal', 'Lalb_Chr03g0042341' => 'lal', 'Lalb_Chr07g0192931' => 'lal', 'Lalb_Chr12g0209551' => 'lal', 'Lalb_Chr19g0125251' => 'lal', 'Lalb_Chr19g0137891' => 'lal', 'Lalb_Chr21g0304641' => 'lal', 'Lalb_Chr21g0309881' => 'lal', 'Lj1A5T12' => 'lonja', 'Lj1C148G10' => 'lonja', 'Lj2A93T83' => 'lonja', 'Lj3A738G68' => 'lonja', 'Lj3C966T1' => 'lonja', 'Lj3g0018958' => 'lja', 'Lj3g0021831' => 'lja', 'Lj3g0025443' => 'lja', 'Lj4g0026809' => 'lja', 'Lj5g0012558' => 'lja', 'Lj5g0021586' => 'lja', 'Lsat_1_v5_gn_5_156840' => 'lsa', 'Lsat_1_v5_gn_8_73460' => 'lsa', 'Lsat_1_v5_gn_8_73481' => 'lsa', 'Lsat_1_v5_gn_9_31601' => 'lsa', 'Lsat_1_v5_gn_9_77320' => 'lsa', 'Manes.01G171300' => 'mes', 'Manes.01G171400' => 'mes', 'Manes.01G236100' => 'mes', 'Manes.02G130500' => 'mes', 'Manes.02G130600' => 'mes', 'Manes.03G180200' => 'mes', 'Manes.05G007000' => 'mes', 'Manes.08G084400' => 'mes', 'Manes.09G092600' => 'mes', 'Manes.15G027900' => 'mes', 'MBI04_g40948_MAGBIO' => 'mbi', 'MBI14_g12123_MAGBIO' => 'mbi', 'MBI18_g28915_MAGBIO' => 'mbi', 'MCO09G053' => 'mco', 'MCO11G782' => 'mco', 'MCO15G215' => 'mco', 'MD03G1088500' => 'mdo', 'MD03G1088600' => 'mdo', 'MD04G1130800' => 'mdo', 'MD09G1291700' => 'mdo', 'MD11G1097500' => 'mdo', 'MD11G1097600' => 'mdo', 'MD12G1143900' => 'mdo', 'MD13G1191400' => 'mdo', 'MD16G1191500' => 'mdo', 'Medtr1g085570' => 'mtr', 'Medtr1g104610' => 'mtr', 'Medtr2g097520' => 'mtr', 'Medtr4g021800' => 'mtr', 'Medtr4g021825' => 'mtr', 'Medtr4g064270' => 'mtr', 'Medtr4g064380' => 'mtr', 'Medtr7g062150' => 'mtr', 'MELO3C003138.2' => 'cme', 'MELO3C005187.2' => 'cme', 'MELO3C009252.2' => 'cme', 'MELO3C014481.2' => 'cme', 'MELO3C020616.2' => 'cme', 'MELO3C020617.2' => 'cme', 'MELO3C020618.2' => 'cme', 'Migut.G00328' => 'egut', 'Migut.J00320' => 'egut', 'Migut.L01000' => 'egut', 'Migut.L01953' => 'egut', 'MSTRG.10253' => 'ama', 'MSTRG.19077' => 'ama', 'MSTRG.26780' => 'ama', 'MSTRG.4023' => 'ama', 'MSTRG.5655' => 'ama', 'MSTRG.9992' => 'ama', 'Nitab4.5_0000043g0310' => 'nta', 'Nitab4.5_0000463g0080' => 'nta', 'Nitab4.5_0000705g0170' => 'nta', 'Nitab4.5_0001326g0060' => 'nta', 'Nitab4.5_0001628g0030' => 'nta', 'Nitab4.5_0002103g0110' => 'nta', 'Nitab4.5_0002946g0030' => 'nta', 'Nitab4.5_0004639g0030' => 'nta', 'Nn2g11149' => 'nnu', 'Nn2g13389' => 'nnu', 'Nn4g25326' => 'nnu', 'Nn4g26290' => 'nnu', 'Nn5g29865' => 'nnu', 'Oeu004163.1' => 'oeu', 'Oeu006901.1' => 'oeu', 'Oeu010096.1' => 'oeu', 'Oeu024340.1' => 'oeu', 'Oeu048369.1' => 'oeu', 'Os01g0973000' => 'osa', 'Os03g0273800' => 'osa', 'Os03g0701200' => 'osa', 'Os03g0834050' => 'osa', 'Os07g0634400' => 'osa', 'Peaxi162Scf00092g01414' => 'pax', 'Peaxi162Scf00165g00818' => 'pax', 'Peaxi162Scf00309g00516' => 'pax', 'Peaxi162Scf00774g00218' => 'pax', 'PGR004G1824' => 'pgr', 'PGR004G2606' => 'pgr', 'PGR031G2716' => 'pgr', 'PGR102G2460' => 'pgr', 'PGR142G2599' => 'pgr', 'PGSC0003DMG400000843' => 'stu', 'PGSC0003DMG400008829' => 'stu', 'PGSC0003DMG400030418' => 'stu', 'PGSC0003DMG400031834' => 'stu', 'PGSC0003DMG401028300' => 'stu', 'PGSC0003DMG402028300' => 'stu', 'Phvul.001G219300' => 'pvu', 'Phvul.007G056000' => 'pvu', 'Phvul.007G208000' => 'pvu', 'Phvul.008G119500' => 'pvu', 'Phvul.010G011200' => 'pvu', 'Phvul.010G014800' => 'pvu', 'Phvul.011G062900' => 'pvu', 'Phvul.L007043' => 'pvu', 'Potri.001G242300' => 'ptr', 'Potri.002G185300' => 'ptr', 'Potri.006G086900' => 'ptr', 'Potri.008G151700' => 'ptr', 'Potri.009G033500' => 'ptr', 'Potri.010G089300' => 'ptr', 'Potri.014G110800' => 'ptr', 'Pp3c27_8130' => 'ppa', 'Pp3c6_27410' => 'ppa', 'PRCOL_00001659' => 'pco', 'PRCOL_00001927' => 'pco', 'PRCOL_00003649' => 'pco', 'Prupe.1G011600' => 'ppe', 'Prupe.3G000800' => 'ppe', 'Prupe.3G001100' => 'ppe', 'Prupe.6G072700' => 'ppe', 'Prupe.6G072800' => 'ppe', 'Prupe.6G257300' => 'ppe', 'Prupe.8G033000' => 'ppe', 'Psat0s2633g0080' => 'psa', 'Psat0s3396g0080' => 'psa', 'Psat0s3396g0200' => 'psa', 'Psat3g139080' => 'psa', 'Psat5g285080' => 'psa', 'Psat6g157760' => 'psa', 'Psat6g208440' => 'psa', 'Psat7g215320' => 'psa', 'Psat7g215400' => 'psa', 'Psat7g235600' => 'psa', 'Psat7g235760' => 'psa', 'PSO063G4603' => 'pso', 'PSO210G0182' => 'pso', 'PSO210G0196' => 'pso', 'PSO339G0394' => 'pso', 'PSO339G4127' => 'pso', 'PSO513G0064' => 'pso', 'PSO761G0079' => 'pso', 'QL01p031003' => 'qlo', 'QL01p031078' => 'qlo', 'QL06p003004' => 'qlo', 'QL07p048731' => 'qlo', 'QL09p037427' => 'qlo', 'RcHm_v2.0_Chr3g0466361' => 'rch', 'RcHm_v2.0_Chr3g0485571' => 'rch', 'RcHm_v2.0_Chr4g0416551' => 'rch', 'RcHm_v2.0_Chr5g0065831' => 'rch', 'Rhsim01G0230500' => 'rsi', 'Rhsim05G0194000' => 'rsi', 'Rhsim08G0250400' => 'rsi', 'Sabra02G0131000' => 'sbr', 'Sabra06G0066300' => 'sbr', 'Sabra08G0115500' => 'sbr', 'Sabra09G0023900' => 'sbr', 'Sabra10G0054000' => 'sbr', 'Sabra14G0081500' => 'sbr', 'Sabra16G0147100' => 'sbr', 'SalBow2G2957' => 'sbo', 'SalBow4G3320' => 'sbo', 'SalBow8G1894' => 'sbo', 'Sc07g0007950' => 'sci', 'Sc12g0001360' => 'sci', 'Sc13g0004330' => 'sci', 'Sc20g0005010' => 'sci', 'Sed0000361' => 'sed', 'Sed0001706' => 'sed', 'Sed0002422' => 'sed', 'Sed0004029' => 'sed', 'Sed0004602' => 'sed', 'Sed0004943' => 'sed', 'Sed0008646' => 'sed', 'Sed0023313' => 'sed', 'Sed0024843' => 'sed', 'SEGI_00081' => 'sgi', 'SEGI_00947' => 'sgi', 'SEGI_04046' => 'sgi', 'SEGI_06880' => 'sgi', 'SEGI_09736' => 'sgi', 'SEGI_12741' => 'sgi', 'SEGI_14530' => 'sgi', 'SEGI_20705' => 'sgi', 'SEGI_26088' => 'sgi', 'SEGI_28323' => 'sgi', 'SEGI_33343' => 'sgi', 'SGA_v2.0_scaffold126G33775' => 'sas', 'SGA_v2.0_scaffold2G01337' => 'sas', 'SGA_v2.0_scaffold38G15006' => 'sas', 'SGA_v2.0_scaffold39G15264' => 'sas', 'SGA_v2.0_scaffold453G51880' => 'sas', 'SHI12696' => 'shi', 'SMO367G1096' => 'smo', 'Solyc01g068630.3' => 'sly', 'Solyc05g011880.3' => 'sly', 'Solyc06g076300.3' => 'sly', 'Solyc09g010940.4' => 'sly', 'Solyc09g075890.3' => 'sly', 'Sopen01g030560' => 'spe', 'Sopen05g006630' => 'spe', 'Sopen06g032720' => 'spe', 'Sopen09g005660' => 'spe', 'Sopen09g030690' => 'spe', 'Sp4g14540' => 'spa', 'Sp4g20030' => 'spa', 'Sp5g01320' => 'spa', 'Sp6g21170' => 'spa', 'Sp6g21180' => 'spa', 'Sp6g21190' => 'spa', 'Sp6g40220' => 'spa', 'TAR362G0122' => 'tar', 'TAR362G1338' => 'tar', 'TAR369G0590' => 'tar', 'TAR371G0824' => 'tar', 'TAR622G1429' => 'tar', 'TAR623G0734' => 'tar', 'TAR625G0441' => 'tar', 'TAR629G0976' => 'tar', 'TAR633G1195' => 'tar', 'TAR636G2660' => 'tar', 'THA.LOC104799440' => 'tha', 'THA.LOC104800966' => 'tha', 'THA.LOC104806559' => 'tha', 'THA.LOC104810765' => 'tha', 'THA.LOC104816266' => 'tha', 'THA.LOC104817419' => 'tha', 'THA.LOC104827021' => 'tha', 'Thecc.01G327400' => 'tca', 'Thecc.04G229200' => 'tca', 'Thecc.05G037400' => 'tca', 'Thecc.09G318600' => 'tca', 'Thecc.09G318700' => 'tca', 'Thhalv10006238m.g' => 'esa', 'Thhalv10014321m.g' => 'esa', 'Thhalv10014335m.g' => 'esa', 'Thhalv10015826m.g' => 'esa', 'Thhalv10017107m.g' => 'esa', 'Thhalv10017180m.g' => 'esa', 'Thhalv10029339m.g' => 'esa', 'TPR.G1699' => 'tpr', 'TPR.G23609' => 'tpr', 'TPR.G3081' => 'tpr', 'TPR.G40397' => 'tpr', 'TPR.G5522' => 'tpr', 'TPR.G5618' => 'tpr', 'TPR.G5626' => 'tpr', 'TWI09G1632' => 'twi', 'TWI23G1230' => 'twi', 'TWI53G1064' => 'twi', 'TWI59G0751' => 'twi', 'TWI74G0947' => 'twi', 'TWI77G0337' => 'twi', 'TWI79G1254' => 'twi', 'unitig_0.g2341' => 'ugi', 'unitig_26.g10006' => 'ugi', 'unitig_26.g10008' => 'ugi', 'unitig_26.g9192' => 'ugi', 'vmacro14547' => 'vma', 'vmacro15333' => 'vma', 'vmacro18743' => 'vma', 'vmacro20166' => 'vma', 'VMungo0331G0523' => 'vmu', 'VMungo0331G1202' => 'vmu', 'VMungo0720G1228' => 'vmu', 'VMungo0720G1514' => 'vmu', 'VMungo1080G0169' => 'vmu', 'VMungo1127G1475' => 'vmu', 'VMungo1383G1208' => 'vmu', 'VMungo1383G1698' => 'vmu', 'Zm00001eb012270' => 'zma', 'Zm00001eb054100' => 'zma', 'Zm00001eb063350' => 'zma', 'Zm00001eb328560' => 'zma', 'Zm00001eb342820' => 'zma', 'Zm00001eb362210' => 'zma', 'Zm00001eb397730' => 'zma', 'Zm00001eb399750' => 'zma' ) $gf_id = 'HOM05D000959' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000959' ) $data_identifier = 'HOM05D000959' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 5, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 5, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 10, 'mbi' => (int) 3, 'mco' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 2, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 3, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 11, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399750' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000959', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '622', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p07100' => 'bna', 'A03p11720' => 'bna', 'A05p08300' => 'bna', 'A05p13380' => 'bna', 'A09p54130' => 'bna', 'A10p16690' => 'bna', 'A10p16700' => 'bna', 'A10p33390' => 'bna', 'Aa31LG10G16020' => 'aar', 'Aa31LG1G11810' => 'aar', 'Aa31LG1G11830' => 'aar', 'Aa31LG1G22510' => 'aar', 'Aa31LG5G4890' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5793' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2310' => 'aag', 'Actinidia08499' => 'ach', 'Actinidia11262' => 'ach', 'Actinidia23926' => 'ach', 'Actinidia34420' => 'ach', 'Actinidia36970' => 'ach', 'Ah.02g111220' => 'amhyb', 'Ah.15g097750' => 'amhyb', 'AL4G27500' => 'aly', 'AL6G11470' => 'aly', 'AL8G35950' => 'aly', 'AL8G35960' => 'aly', 'AL8G35970' => 'aly', 'Aqoxy1G00912' => 'aox', 'Aqoxy2G02253' => 'aox', 'Aqoxy2G02411' => 'aox', 'Aqoxy5G00485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BZ66YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K8ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM4FUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6BF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HFV7XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25JBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0YNNV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MAKK6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P70IT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP2Z6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V61LZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YWP64R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3S9AI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7PGHH' => 'arhy', 'AT2G32150' => 'ath', 'AT3G62040' => 'ath', 'AT5G02230' => 'ath', 'AT5G59480' => 'ath', 'AT5G59490' => 'ath', 'ATR0332G060' => 'atr', 'ATR0559G190' => 'atr', 'ATR0693G294' => 'atr', 'Atru.chr3.3975' => 'acertr', 'Atru.chr3.3976' => 'acertr', 'Atru.chr3.3977' => 'acertr', 'Atru.chr4.2498' => 'acertr', 'Atru.chr5.838' => 'acertr', 'Atru.chr8.1990' => 'acertr', 'Atru.chr8.1991' => 'acertr', 'Atru.chr8.1992' => 'acertr', 'AUR62001759' => 'cqu', 'AUR62009545' => 'cqu', 'AUR62010474' => 'cqu', 'AUR62025820' => 'cqu', 'AUR62030422' => 'cqu', 'AUR62033605' => 'cqu', 'AUR62038615' => 'cqu', 'AUR62041347' => 'cqu', 'BcaB01g04574' => 'bca', 'BcaB02g09263' => 'bca', 'BcaB02g10453' => 'bca', 'BcaB05g22513' => 'bca', 'BcaB08g36253' => 'bca', 'BcaB08g36254' => 'bca', 'BcaC01g06519' => 'bca', 'BcaC02g11889' => 'bca', 'BcaC03g14010' => 'bca', 'BcaC03g18439' => 'bca', 'BcaC04g19765' => 'bca', 'BcaC09g48432' => 'bca', 'BcaNung07302' => 'bca', 'BolC2t06040H' => 'bol', 'BolC2t07346H' => 'bol', 'BolC3t13817H' => 'bol', 'BolC4t22625H' => 'bol', 'BolC4t23297H' => 'bol', 'BolC8t51278H' => 'bol', 'BolC9t58050H' => 'bol', 'BolC9t58051H' => 'bol', 'BolC9t60163H' => 'bol', 'BraA02t04712Z' => 'bra', 'BraA02t05791Z' => 'bra', 'BraA03t10483Z' => 'bra', 'BraA05t19795Z' => 'bra', 'BraA05t20276Z' => 'bra', 'BraA09t40827Z' => 'bra', 'BraA10t43750Z' => 'bra', 'BraA10t43751Z' => 'bra', 'BraA10t45370Z' => 'bra', 'C02p00400' => 'bna', 'C02p12460' => 'bna', 'C03p13680' => 'bna', 'C04p10270' => 'bna', 'C04p17500' => 'bna', 'C08p37010' => 'bna', 'C09p51880' => 'bna', 'C09p51890' => 'bna', 'C09p74300' => 'bna', 'CAN.G179.26' => 'can', 'CAN.G3384.1' => 'can', 'CAN.G394.68' => 'can', 'CAN.G907.13' => 'can', 'CANSAT11G0012' => 'cansat', 'CANSAT25G1586' => 'cansat', 'CANSAT35G0735' => 'cansat', 'CANSAT54G0556' => 'cansat', 'CANSAT64G0356' => 'cansat', 'CANSAT78G2042' => 'cansat', 'CARHR125920' => 'chi', 'CARHR131910' => 'chi', 'CARHR172390' => 'chi', 'CARHR211140' => 'chi', 'CARHR285850' => 'chi', 'CARHR285860' => 'chi', 'Carub.0004s1347' => 'cru', 'Carub.0004s1960' => 'cru', 'Carub.0005s2880' => 'cru', 'Carub.0006s0107' => 'cru', 'Carub.0008s2015' => 'cru', 'Carub.0008s2016' => 'cru', 'Carub.0008s2017' => 'cru', 'Ca_01315_v3' => 'car', 'Ca_05063_v3' => 'car', 'Ca_10231_v3' => 'car', 'Ca_10913_v3' => 'car', 'Ca_19156_v3' => 'car', 'Ca_23644_v3' => 'car', 'Ca_26735_v3' => 'car', 'Cc01_g13130' => 'ccan', 'Cc02_g21690' => 'ccan', 'Cc03_g03600' => 'ccan', 'Cc06_g02510' => 'ccan', 'CDE02G1265' => 'cde', 'CDE05G0415' => 'cde', 'CDE08G1082' => 'cde', 'Cfa005780' => 'cfa', 'Cfa011522' => 'cfa', 'Cfa011523' => 'cfa', 'Cfa015627' => 'cfa', 'Cfa017359' => 'cfa', 'Ciclev10005687m.g' => 'ccl', 'Ciclev10012173m.g' => 'ccl', 'Ciclev10021621m.g' => 'ccl', 'Ciclev10028968m.g' => 'ccl', 'Ciclev10029907m.g' => 'ccl', 'CiPaw.01G164800' => 'cil', 'CiPaw.07G083700' => 'cil', 'CiPaw.07G127000' => 'cil', 'CiPaw.07G136900' => 'cil', 'CiPaw.08G081700' => 'cil', 'CiPaw.09G194600' => 'cil', 'CiPaw.10G146500' => 'cil', 'CiPaw.13G091500' => 'cil', 'CiPaw.13G091600' => 'cil', 'ClCG00G003390' => 'cla', 'ClCG01G007220' => 'cla', 'ClCG03G001370' => 'cla', 'ClCG04G008100' => 'cla', 'ClCG06G006110' => 'cla', 'ClCG06G006130' => 'cla', 'ClCG10G021210' => 'cla', 'COL.COLO4_07648' => 'col', 'COL.COLO4_07650' => 'col', 'COL.COLO4_07651' => 'col', 'COL.COLO4_14780' => 'col', 'COL.COLO4_18546' => 'col', 'COL.COLO4_18547' => 'col', 'COL.COLO4_23103' => 'col', 'COL.COLO4_30419' => 'col', 'COL.COLO4_34232' => 'col', 'Cpa.g.sc169.20' => 'cpa', 'Cpa.g.sc57.45' => 'cpa', 'Cpa.g.sc58.124' => 'cpa', 'Cpa.g.sc58.125' => 'cpa', 'Cpa.g.sc81.118' => 'cpa', 'Cpa.g.sc81.119' => 'cpa', 'Cre12.g524700' => 'cre', 'CsaV3_1G034430' => 'csa', 'CsaV3_1G034440' => 'csa', 'CsaV3_1G034450' => 'csa', 'CsaV3_3G034830' => 'csa', 'CsaV3_4G025090' => 'csa', 'CsaV3_5G018660' => 'csa', 'CsaV3_6G038160' => 'csa', 'CSS0003447' => 'camsi', 'CSS0017840' => 'camsi', 'CSS0019260' => 'camsi', 'CSS0040375' => 'camsi', 'CSS0042533' => 'camsi', 'DCAR_005960' => 'dca', 'DCAR_012104' => 'dca', 'DCAR_012105' => 'dca', 'DCAR_012293' => 'dca', 'DCAR_015632' => 'dca', 'DCAR_024602' => 'dca', 'DCAR_028752' => 'dca', 'Dinv06261' => 'din', 'Dinv13982' => 'din', 'Dinv17029' => 'din', 'Dinv18463' => 'din', 'Dinv33181' => 'din', 'Dinv35585' => 'din', 'Dinv37161' => 'din', 'Dinv42977' => 'din', 'Dinv43122' => 'din', 'Dinv44517' => 'din', 'Duzib093G0256' => 'dzi', 'Duzib106G1254' => 'dzi', 'Duzib128G1789' => 'dzi', 'Duzib133G0633' => 'dzi', 'Duzib138G0510' => 'dzi', 'Duzib150G1084' => 'dzi', 'Duzib168G0488' => 'dzi', 'Duzib168G1523' => 'dzi', 'Duzib170G0133' => 'dzi', 'ECA234G1433' => 'eca', 'ECA236G1432' => 'eca', 'ECA236G2256' => 'eca', 'ECA236G2365' => 'eca', 'ECA236G4830' => 'eca', 'ECA248G1505' => 'eca', 'EL10Ac3g06431' => 'bvu', 'EL10Ac5g12577' => 'bvu', 'EL10Ac6g13533' => 'bvu', 'EL10Ac7g16045' => 'bvu', 'Eucgr.A01281' => 'egr', 'Eucgr.B02326' => 'egr', 'Eucgr.H03532' => 'egr', 'Eucgr.K00553' => 'egr', 'Eucgr.K03116' => 'egr', 'FAN02G3963' => 'fan', 'FAN05G0438' => 'fan', 'FAN09G2434' => 'fan', 'FAN12G3984' => 'fan', 'FAN14G0798' => 'fan', 'FAN17G0652' => 'fan', 'FAN19G1988' => 'fan', 'FAN22G0632' => 'fan', 'FAN23G0387' => 'fan', 'FAN26G1323' => 'fan', 'FAN28G0666' => 'fan', 'FvH4_1g26080' => 'fve', 'FvH4_3g36780' => 'fve', 'FvH4_4g15270' => 'fve', 'FvH4_6g13490' => 'fve', 'Glyma.01G098700' => 'gma', 'Glyma.03G065900' => 'gma', 'Glyma.03G073754' => 'gma', 'Glyma.03G073758' => 'gma', 'Glyma.03G083200' => 'gma', 'Glyma.03G225500' => 'gma', 'Glyma.05G037766' => 'gma', 'Glyma.07G133500' => 'gma', 'Glyma.10G139400' => 'gma', 'Glyma.10G248900' => 'gma', 'Glyma.11G137800' => 'gma', 'Glyma.12G061300' => 'gma', 'Glyma.13G337900' => 'gma', 'Glyma.15G036600' => 'gma', 'Glyma.18G182800' => 'gma', 'Glyma.19G222500' => 'gma', 'Glyma.20G144800' => 'gma', 'Gohir.A01G222000' => 'ghi', 'Gohir.A03G044000' => 'ghi', 'Gohir.A03G044100' => 'ghi', 'Gohir.A04G083100' => 'ghi', 'Gohir.A07G127200' => 'ghi', 'Gohir.A07G132400' => 'ghi', 'Gohir.A08G000700' => 'ghi', 'Gohir.A11G327300' => 'ghi', 'Gohir.D01G211500' => 'ghi', 'Gohir.D03G123400' => 'ghi', 'Gohir.D03G123500' => 'ghi', 'Gohir.D04G121800' => 'ghi', 'Gohir.D07G131500' => 'ghi', 'Gohir.D07G136600' => 'ghi', 'Gohir.D08G011600' => 'ghi', 'Gohir.D11G346200' => 'ghi', 'Gorai.001G142800' => 'gra', 'Gorai.001G148700' => 'gra', 'Gorai.002G257300' => 'gra', 'Gorai.003G130000' => 'gra', 'Gorai.003G130100' => 'gra', 'Gorai.004G005300' => 'gra', 'Gorai.007G376500' => 'gra', 'Gorai.012G104700' => 'gra', 'GSVIVG01017946001' => 'vvi', 'GSVIVG01024928001' => 'vvi', 'GSVIVG01028227001' => 'vvi', 'GSVIVG01034151001' => 'vvi', 'HanXRQChr05g0135031' => 'han', 'HanXRQChr05g0135041' => 'han', 'HanXRQChr05g0140021' => 'han', 'HanXRQChr06g0178981' => 'han', 'HanXRQChr07g0188251' => 'han', 'HanXRQChr08g0235311' => 'han', 'HanXRQChr09g0271011' => 'han', 'HanXRQChr10g0293321' => 'han', 'HanXRQChr13g0388171' => 'han', 'Haze_00916' => 'cav', 'Haze_05063' => 'cav', 'Haze_20814' => 'cav', 'Haze_24128' => 'cav', 'Hma1.2p1_0745F.1_g212010' => 'hma', 'Hma1.2p1_0757F.1_g213260' => 'hma', 'Hma1.2p1_0936F.1_g238840' => 'hma', 'Hma1.2p1_1735F.1_g299890' => 'hma', 'Hma1.2p1_1861F.1_g305685' => 'hma', 'HPP92_003397' => 'vpl', 'HPP92_012597' => 'vpl', 'HPP92_015520' => 'vpl', 'HPP92_015539' => 'vpl', 'HPP92_020373' => 'vpl', 'Hund04938' => 'sun', 'Hund10677' => 'sun', 'Hund11033' => 'sun', 'Hund12155' => 'sun', 'Lalb_Chr01g0022551' => 'lal', 'Lalb_Chr03g0042341' => 'lal', 'Lalb_Chr07g0192931' => 'lal', 'Lalb_Chr12g0209551' => 'lal', 'Lalb_Chr19g0125251' => 'lal', 'Lalb_Chr19g0137891' => 'lal', 'Lalb_Chr21g0304641' => 'lal', 'Lalb_Chr21g0309881' => 'lal', 'Lj1A5T12' => 'lonja', 'Lj1C148G10' => 'lonja', 'Lj2A93T83' => 'lonja', 'Lj3A738G68' => 'lonja', 'Lj3C966T1' => 'lonja', 'Lj3g0018958' => 'lja', 'Lj3g0021831' => 'lja', 'Lj3g0025443' => 'lja', 'Lj4g0026809' => 'lja', 'Lj5g0012558' => 'lja', 'Lj5g0021586' => 'lja', 'Lsat_1_v5_gn_5_156840' => 'lsa', 'Lsat_1_v5_gn_8_73460' => 'lsa', 'Lsat_1_v5_gn_8_73481' => 'lsa', 'Lsat_1_v5_gn_9_31601' => 'lsa', 'Lsat_1_v5_gn_9_77320' => 'lsa', 'Manes.01G171300' => 'mes', 'Manes.01G171400' => 'mes', 'Manes.01G236100' => 'mes', 'Manes.02G130500' => 'mes', 'Manes.02G130600' => 'mes', 'Manes.03G180200' => 'mes', 'Manes.05G007000' => 'mes', 'Manes.08G084400' => 'mes', 'Manes.09G092600' => 'mes', 'Manes.15G027900' => 'mes', 'MBI04_g40948_MAGBIO' => 'mbi', 'MBI14_g12123_MAGBIO' => 'mbi', 'MBI18_g28915_MAGBIO' => 'mbi', 'MCO09G053' => 'mco', 'MCO11G782' => 'mco', 'MCO15G215' => 'mco', 'MD03G1088500' => 'mdo', 'MD03G1088600' => 'mdo', 'MD04G1130800' => 'mdo', 'MD09G1291700' => 'mdo', 'MD11G1097500' => 'mdo', 'MD11G1097600' => 'mdo', 'MD12G1143900' => 'mdo', 'MD13G1191400' => 'mdo', 'MD16G1191500' => 'mdo', 'Medtr1g085570' => 'mtr', 'Medtr1g104610' => 'mtr', 'Medtr2g097520' => 'mtr', 'Medtr4g021800' => 'mtr', 'Medtr4g021825' => 'mtr', 'Medtr4g064270' => 'mtr', 'Medtr4g064380' => 'mtr', 'Medtr7g062150' => 'mtr', 'MELO3C003138.2' => 'cme', 'MELO3C005187.2' => 'cme', 'MELO3C009252.2' => 'cme', 'MELO3C014481.2' => 'cme', 'MELO3C020616.2' => 'cme', 'MELO3C020617.2' => 'cme', 'MELO3C020618.2' => 'cme', 'Migut.G00328' => 'egut', 'Migut.J00320' => 'egut', 'Migut.L01000' => 'egut', 'Migut.L01953' => 'egut', 'MSTRG.10253' => 'ama', 'MSTRG.19077' => 'ama', 'MSTRG.26780' => 'ama', 'MSTRG.4023' => 'ama', 'MSTRG.5655' => 'ama', 'MSTRG.9992' => 'ama', 'Nitab4.5_0000043g0310' => 'nta', 'Nitab4.5_0000463g0080' => 'nta', 'Nitab4.5_0000705g0170' => 'nta', 'Nitab4.5_0001326g0060' => 'nta', 'Nitab4.5_0001628g0030' => 'nta', 'Nitab4.5_0002103g0110' => 'nta', 'Nitab4.5_0002946g0030' => 'nta', 'Nitab4.5_0004639g0030' => 'nta', 'Nn2g11149' => 'nnu', 'Nn2g13389' => 'nnu', 'Nn4g25326' => 'nnu', 'Nn4g26290' => 'nnu', 'Nn5g29865' => 'nnu', 'Oeu004163.1' => 'oeu', 'Oeu006901.1' => 'oeu', 'Oeu010096.1' => 'oeu', 'Oeu024340.1' => 'oeu', 'Oeu048369.1' => 'oeu', 'Os01g0973000' => 'osa', 'Os03g0273800' => 'osa', 'Os03g0701200' => 'osa', 'Os03g0834050' => 'osa', 'Os07g0634400' => 'osa', 'Peaxi162Scf00092g01414' => 'pax', 'Peaxi162Scf00165g00818' => 'pax', 'Peaxi162Scf00309g00516' => 'pax', 'Peaxi162Scf00774g00218' => 'pax', 'PGR004G1824' => 'pgr', 'PGR004G2606' => 'pgr', 'PGR031G2716' => 'pgr', 'PGR102G2460' => 'pgr', 'PGR142G2599' => 'pgr', 'PGSC0003DMG400000843' => 'stu', 'PGSC0003DMG400008829' => 'stu', 'PGSC0003DMG400030418' => 'stu', 'PGSC0003DMG400031834' => 'stu', 'PGSC0003DMG401028300' => 'stu', 'PGSC0003DMG402028300' => 'stu', 'Phvul.001G219300' => 'pvu', 'Phvul.007G056000' => 'pvu', 'Phvul.007G208000' => 'pvu', 'Phvul.008G119500' => 'pvu', 'Phvul.010G011200' => 'pvu', 'Phvul.010G014800' => 'pvu', 'Phvul.011G062900' => 'pvu', 'Phvul.L007043' => 'pvu', 'Potri.001G242300' => 'ptr', 'Potri.002G185300' => 'ptr', 'Potri.006G086900' => 'ptr', 'Potri.008G151700' => 'ptr', 'Potri.009G033500' => 'ptr', 'Potri.010G089300' => 'ptr', 'Potri.014G110800' => 'ptr', 'Pp3c27_8130' => 'ppa', 'Pp3c6_27410' => 'ppa', 'PRCOL_00001659' => 'pco', 'PRCOL_00001927' => 'pco', 'PRCOL_00003649' => 'pco', 'Prupe.1G011600' => 'ppe', 'Prupe.3G000800' => 'ppe', 'Prupe.3G001100' => 'ppe', 'Prupe.6G072700' => 'ppe', 'Prupe.6G072800' => 'ppe', 'Prupe.6G257300' => 'ppe', 'Prupe.8G033000' => 'ppe', 'Psat0s2633g0080' => 'psa', 'Psat0s3396g0080' => 'psa', 'Psat0s3396g0200' => 'psa', 'Psat3g139080' => 'psa', 'Psat5g285080' => 'psa', 'Psat6g157760' => 'psa', 'Psat6g208440' => 'psa', 'Psat7g215320' => 'psa', 'Psat7g215400' => 'psa', 'Psat7g235600' => 'psa', 'Psat7g235760' => 'psa', 'PSO063G4603' => 'pso', 'PSO210G0182' => 'pso', 'PSO210G0196' => 'pso', 'PSO339G0394' => 'pso', 'PSO339G4127' => 'pso', 'PSO513G0064' => 'pso', 'PSO761G0079' => 'pso', 'QL01p031003' => 'qlo', 'QL01p031078' => 'qlo', 'QL06p003004' => 'qlo', 'QL07p048731' => 'qlo', 'QL09p037427' => 'qlo', 'RcHm_v2.0_Chr3g0466361' => 'rch', 'RcHm_v2.0_Chr3g0485571' => 'rch', 'RcHm_v2.0_Chr4g0416551' => 'rch', 'RcHm_v2.0_Chr5g0065831' => 'rch', 'Rhsim01G0230500' => 'rsi', 'Rhsim05G0194000' => 'rsi', 'Rhsim08G0250400' => 'rsi', 'Sabra02G0131000' => 'sbr', 'Sabra06G0066300' => 'sbr', 'Sabra08G0115500' => 'sbr', 'Sabra09G0023900' => 'sbr', 'Sabra10G0054000' => 'sbr', 'Sabra14G0081500' => 'sbr', 'Sabra16G0147100' => 'sbr', 'SalBow2G2957' => 'sbo', 'SalBow4G3320' => 'sbo', 'SalBow8G1894' => 'sbo', 'Sc07g0007950' => 'sci', 'Sc12g0001360' => 'sci', 'Sc13g0004330' => 'sci', 'Sc20g0005010' => 'sci', 'Sed0000361' => 'sed', 'Sed0001706' => 'sed', 'Sed0002422' => 'sed', 'Sed0004029' => 'sed', 'Sed0004602' => 'sed', 'Sed0004943' => 'sed', 'Sed0008646' => 'sed', 'Sed0023313' => 'sed', 'Sed0024843' => 'sed', 'SEGI_00081' => 'sgi', 'SEGI_00947' => 'sgi', 'SEGI_04046' => 'sgi', 'SEGI_06880' => 'sgi', 'SEGI_09736' => 'sgi', 'SEGI_12741' => 'sgi', 'SEGI_14530' => 'sgi', 'SEGI_20705' => 'sgi', 'SEGI_26088' => 'sgi', 'SEGI_28323' => 'sgi', 'SEGI_33343' => 'sgi', 'SGA_v2.0_scaffold126G33775' => 'sas', 'SGA_v2.0_scaffold2G01337' => 'sas', 'SGA_v2.0_scaffold38G15006' => 'sas', 'SGA_v2.0_scaffold39G15264' => 'sas', 'SGA_v2.0_scaffold453G51880' => 'sas', 'SHI12696' => 'shi', 'SMO367G1096' => 'smo', 'Solyc01g068630.3' => 'sly', 'Solyc05g011880.3' => 'sly', 'Solyc06g076300.3' => 'sly', 'Solyc09g010940.4' => 'sly', 'Solyc09g075890.3' => 'sly', 'Sopen01g030560' => 'spe', 'Sopen05g006630' => 'spe', 'Sopen06g032720' => 'spe', 'Sopen09g005660' => 'spe', 'Sopen09g030690' => 'spe', 'Sp4g14540' => 'spa', 'Sp4g20030' => 'spa', 'Sp5g01320' => 'spa', 'Sp6g21170' => 'spa', 'Sp6g21180' => 'spa', 'Sp6g21190' => 'spa', 'Sp6g40220' => 'spa', 'TAR362G0122' => 'tar', 'TAR362G1338' => 'tar', 'TAR369G0590' => 'tar', 'TAR371G0824' => 'tar', 'TAR622G1429' => 'tar', 'TAR623G0734' => 'tar', 'TAR625G0441' => 'tar', 'TAR629G0976' => 'tar', 'TAR633G1195' => 'tar', 'TAR636G2660' => 'tar', 'THA.LOC104799440' => 'tha', 'THA.LOC104800966' => 'tha', 'THA.LOC104806559' => 'tha', 'THA.LOC104810765' => 'tha', 'THA.LOC104816266' => 'tha', 'THA.LOC104817419' => 'tha', 'THA.LOC104827021' => 'tha', 'Thecc.01G327400' => 'tca', 'Thecc.04G229200' => 'tca', 'Thecc.05G037400' => 'tca', 'Thecc.09G318600' => 'tca', 'Thecc.09G318700' => 'tca', 'Thhalv10006238m.g' => 'esa', 'Thhalv10014321m.g' => 'esa', 'Thhalv10014335m.g' => 'esa', 'Thhalv10015826m.g' => 'esa', 'Thhalv10017107m.g' => 'esa', 'Thhalv10017180m.g' => 'esa', 'Thhalv10029339m.g' => 'esa', 'TPR.G1699' => 'tpr', 'TPR.G23609' => 'tpr', 'TPR.G3081' => 'tpr', 'TPR.G40397' => 'tpr', 'TPR.G5522' => 'tpr', 'TPR.G5618' => 'tpr', 'TPR.G5626' => 'tpr', 'TWI09G1632' => 'twi', 'TWI23G1230' => 'twi', 'TWI53G1064' => 'twi', 'TWI59G0751' => 'twi', 'TWI74G0947' => 'twi', 'TWI77G0337' => 'twi', 'TWI79G1254' => 'twi', 'unitig_0.g2341' => 'ugi', 'unitig_26.g10006' => 'ugi', 'unitig_26.g10008' => 'ugi', 'unitig_26.g9192' => 'ugi', 'vmacro14547' => 'vma', 'vmacro15333' => 'vma', 'vmacro18743' => 'vma', 'vmacro20166' => 'vma', 'VMungo0331G0523' => 'vmu', 'VMungo0331G1202' => 'vmu', 'VMungo0720G1228' => 'vmu', 'VMungo0720G1514' => 'vmu', 'VMungo1080G0169' => 'vmu', 'VMungo1127G1475' => 'vmu', 'VMungo1383G1208' => 'vmu', 'VMungo1383G1698' => 'vmu', 'Zm00001eb012270' => 'zma', 'Zm00001eb054100' => 'zma', 'Zm00001eb063350' => 'zma', 'Zm00001eb328560' => 'zma', 'Zm00001eb342820' => 'zma', 'Zm00001eb362210' => 'zma', 'Zm00001eb397730' => 'zma', 'Zm00001eb399750' => 'zma' ), 'gf_id' => 'HOM05D000959', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000959' ), 'data_identifier' => 'HOM05D000959', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000959', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '622', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p07100' => 'bna', 'A03p11720' => 'bna', 'A05p08300' => 'bna', 'A05p13380' => 'bna', 'A09p54130' => 'bna', 'A10p16690' => 'bna', 'A10p16700' => 'bna', 'A10p33390' => 'bna', 'Aa31LG10G16020' => 'aar', 'Aa31LG1G11810' => 'aar', 'Aa31LG1G11830' => 'aar', 'Aa31LG1G22510' => 'aar', 'Aa31LG5G4890' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5793' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2310' => 'aag', 'Actinidia08499' => 'ach', 'Actinidia11262' => 'ach', 'Actinidia23926' => 'ach', 'Actinidia34420' => 'ach', 'Actinidia36970' => 'ach', 'Ah.02g111220' => 'amhyb', 'Ah.15g097750' => 'amhyb', 'AL4G27500' => 'aly', 'AL6G11470' => 'aly', 'AL8G35950' => 'aly', 'AL8G35960' => 'aly', 'AL8G35970' => 'aly', 'Aqoxy1G00912' => 'aox', 'Aqoxy2G02253' => 'aox', 'Aqoxy2G02411' => 'aox', 'Aqoxy5G00485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BZ66YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K8ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM4FUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6BF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HFV7XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25JBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0YNNV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MAKK6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P70IT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP2Z6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V61LZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YWP64R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3S9AI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7PGHH' => 'arhy', 'AT2G32150' => 'ath', 'AT3G62040' => 'ath', 'AT5G02230' => 'ath', 'AT5G59480' => 'ath', 'AT5G59490' => 'ath', 'ATR0332G060' => 'atr', 'ATR0559G190' => 'atr', 'ATR0693G294' => 'atr', 'Atru.chr3.3975' => 'acertr', 'Atru.chr3.3976' => 'acertr', 'Atru.chr3.3977' => 'acertr', 'Atru.chr4.2498' => 'acertr', 'Atru.chr5.838' => 'acertr', 'Atru.chr8.1990' => 'acertr', 'Atru.chr8.1991' => 'acertr', 'Atru.chr8.1992' => 'acertr', 'AUR62001759' => 'cqu', 'AUR62009545' => 'cqu', 'AUR62010474' => 'cqu', 'AUR62025820' => 'cqu', 'AUR62030422' => 'cqu', 'AUR62033605' => 'cqu', 'AUR62038615' => 'cqu', 'AUR62041347' => 'cqu', 'BcaB01g04574' => 'bca', 'BcaB02g09263' => 'bca', 'BcaB02g10453' => 'bca', 'BcaB05g22513' => 'bca', 'BcaB08g36253' => 'bca', 'BcaB08g36254' => 'bca', 'BcaC01g06519' => 'bca', 'BcaC02g11889' => 'bca', 'BcaC03g14010' => 'bca', 'BcaC03g18439' => 'bca', 'BcaC04g19765' => 'bca', 'BcaC09g48432' => 'bca', 'BcaNung07302' => 'bca', 'BolC2t06040H' => 'bol', 'BolC2t07346H' => 'bol', 'BolC3t13817H' => 'bol', 'BolC4t22625H' => 'bol', 'BolC4t23297H' => 'bol', 'BolC8t51278H' => 'bol', 'BolC9t58050H' => 'bol', 'BolC9t58051H' => 'bol', 'BolC9t60163H' => 'bol', 'BraA02t04712Z' => 'bra', 'BraA02t05791Z' => 'bra', 'BraA03t10483Z' => 'bra', 'BraA05t19795Z' => 'bra', 'BraA05t20276Z' => 'bra', 'BraA09t40827Z' => 'bra', 'BraA10t43750Z' => 'bra', 'BraA10t43751Z' => 'bra', 'BraA10t45370Z' => 'bra', 'C02p00400' => 'bna', 'C02p12460' => 'bna', 'C03p13680' => 'bna', 'C04p10270' => 'bna', 'C04p17500' => 'bna', 'C08p37010' => 'bna', 'C09p51880' => 'bna', 'C09p51890' => 'bna', 'C09p74300' => 'bna', 'CAN.G179.26' => 'can', 'CAN.G3384.1' => 'can', 'CAN.G394.68' => 'can', 'CAN.G907.13' => 'can', 'CANSAT11G0012' => 'cansat', 'CANSAT25G1586' => 'cansat', 'CANSAT35G0735' => 'cansat', 'CANSAT54G0556' => 'cansat', 'CANSAT64G0356' => 'cansat', 'CANSAT78G2042' => 'cansat', 'CARHR125920' => 'chi', 'CARHR131910' => 'chi', 'CARHR172390' => 'chi', 'CARHR211140' => 'chi', 'CARHR285850' => 'chi', 'CARHR285860' => 'chi', 'Carub.0004s1347' => 'cru', 'Carub.0004s1960' => 'cru', 'Carub.0005s2880' => 'cru', 'Carub.0006s0107' => 'cru', 'Carub.0008s2015' => 'cru', 'Carub.0008s2016' => 'cru', 'Carub.0008s2017' => 'cru', 'Ca_01315_v3' => 'car', 'Ca_05063_v3' => 'car', 'Ca_10231_v3' => 'car', 'Ca_10913_v3' => 'car', 'Ca_19156_v3' => 'car', 'Ca_23644_v3' => 'car', 'Ca_26735_v3' => 'car', 'Cc01_g13130' => 'ccan', 'Cc02_g21690' => 'ccan', 'Cc03_g03600' => 'ccan', 'Cc06_g02510' => 'ccan', 'CDE02G1265' => 'cde', 'CDE05G0415' => 'cde', 'CDE08G1082' => 'cde', 'Cfa005780' => 'cfa', 'Cfa011522' => 'cfa', 'Cfa011523' => 'cfa', 'Cfa015627' => 'cfa', 'Cfa017359' => 'cfa', 'Ciclev10005687m.g' => 'ccl', 'Ciclev10012173m.g' => 'ccl', 'Ciclev10021621m.g' => 'ccl', 'Ciclev10028968m.g' => 'ccl', 'Ciclev10029907m.g' => 'ccl', 'CiPaw.01G164800' => 'cil', 'CiPaw.07G083700' => 'cil', 'CiPaw.07G127000' => 'cil', 'CiPaw.07G136900' => 'cil', 'CiPaw.08G081700' => 'cil', 'CiPaw.09G194600' => 'cil', 'CiPaw.10G146500' => 'cil', 'CiPaw.13G091500' => 'cil', 'CiPaw.13G091600' => 'cil', 'ClCG00G003390' => 'cla', 'ClCG01G007220' => 'cla', 'ClCG03G001370' => 'cla', 'ClCG04G008100' => 'cla', 'ClCG06G006110' => 'cla', 'ClCG06G006130' => 'cla', 'ClCG10G021210' => 'cla', 'COL.COLO4_07648' => 'col', 'COL.COLO4_07650' => 'col', 'COL.COLO4_07651' => 'col', 'COL.COLO4_14780' => 'col', 'COL.COLO4_18546' => 'col', 'COL.COLO4_18547' => 'col', 'COL.COLO4_23103' => 'col', 'COL.COLO4_30419' => 'col', 'COL.COLO4_34232' => 'col', 'Cpa.g.sc169.20' => 'cpa', 'Cpa.g.sc57.45' => 'cpa', 'Cpa.g.sc58.124' => 'cpa', 'Cpa.g.sc58.125' => 'cpa', 'Cpa.g.sc81.118' => 'cpa', 'Cpa.g.sc81.119' => 'cpa', 'Cre12.g524700' => 'cre', 'CsaV3_1G034430' => 'csa', 'CsaV3_1G034440' => 'csa', 'CsaV3_1G034450' => 'csa', 'CsaV3_3G034830' => 'csa', 'CsaV3_4G025090' => 'csa', 'CsaV3_5G018660' => 'csa', 'CsaV3_6G038160' => 'csa', 'CSS0003447' => 'camsi', 'CSS0017840' => 'camsi', 'CSS0019260' => 'camsi', 'CSS0040375' => 'camsi', 'CSS0042533' => 'camsi', 'DCAR_005960' => 'dca', 'DCAR_012104' => 'dca', 'DCAR_012105' => 'dca', 'DCAR_012293' => 'dca', 'DCAR_015632' => 'dca', 'DCAR_024602' => 'dca', 'DCAR_028752' => 'dca', 'Dinv06261' => 'din', 'Dinv13982' => 'din', 'Dinv17029' => 'din', 'Dinv18463' => 'din', 'Dinv33181' => 'din', 'Dinv35585' => 'din', 'Dinv37161' => 'din', 'Dinv42977' => 'din', 'Dinv43122' => 'din', 'Dinv44517' => 'din', 'Duzib093G0256' => 'dzi', 'Duzib106G1254' => 'dzi', 'Duzib128G1789' => 'dzi', 'Duzib133G0633' => 'dzi', 'Duzib138G0510' => 'dzi', 'Duzib150G1084' => 'dzi', 'Duzib168G0488' => 'dzi', 'Duzib168G1523' => 'dzi', 'Duzib170G0133' => 'dzi', 'ECA234G1433' => 'eca', 'ECA236G1432' => 'eca', 'ECA236G2256' => 'eca', 'ECA236G2365' => 'eca', 'ECA236G4830' => 'eca', 'ECA248G1505' => 'eca', 'EL10Ac3g06431' => 'bvu', 'EL10Ac5g12577' => 'bvu', 'EL10Ac6g13533' => 'bvu', 'EL10Ac7g16045' => 'bvu', 'Eucgr.A01281' => 'egr', 'Eucgr.B02326' => 'egr', 'Eucgr.H03532' => 'egr', 'Eucgr.K00553' => 'egr', 'Eucgr.K03116' => 'egr', 'FAN02G3963' => 'fan', 'FAN05G0438' => 'fan', 'FAN09G2434' => 'fan', 'FAN12G3984' => 'fan', 'FAN14G0798' => 'fan', 'FAN17G0652' => 'fan', 'FAN19G1988' => 'fan', 'FAN22G0632' => 'fan', 'FAN23G0387' => 'fan', 'FAN26G1323' => 'fan', 'FAN28G0666' => 'fan', 'FvH4_1g26080' => 'fve', 'FvH4_3g36780' => 'fve', 'FvH4_4g15270' => 'fve', 'FvH4_6g13490' => 'fve', 'Glyma.01G098700' => 'gma', 'Glyma.03G065900' => 'gma', 'Glyma.03G073754' => 'gma', 'Glyma.03G073758' => 'gma', 'Glyma.03G083200' => 'gma', 'Glyma.03G225500' => 'gma', 'Glyma.05G037766' => 'gma', 'Glyma.07G133500' => 'gma', 'Glyma.10G139400' => 'gma', 'Glyma.10G248900' => 'gma', 'Glyma.11G137800' => 'gma', 'Glyma.12G061300' => 'gma', 'Glyma.13G337900' => 'gma', 'Glyma.15G036600' => 'gma', 'Glyma.18G182800' => 'gma', 'Glyma.19G222500' => 'gma', 'Glyma.20G144800' => 'gma', 'Gohir.A01G222000' => 'ghi', 'Gohir.A03G044000' => 'ghi', 'Gohir.A03G044100' => 'ghi', 'Gohir.A04G083100' => 'ghi', 'Gohir.A07G127200' => 'ghi', 'Gohir.A07G132400' => 'ghi', 'Gohir.A08G000700' => 'ghi', 'Gohir.A11G327300' => 'ghi', 'Gohir.D01G211500' => 'ghi', 'Gohir.D03G123400' => 'ghi', 'Gohir.D03G123500' => 'ghi', 'Gohir.D04G121800' => 'ghi', 'Gohir.D07G131500' => 'ghi', 'Gohir.D07G136600' => 'ghi', 'Gohir.D08G011600' => 'ghi', 'Gohir.D11G346200' => 'ghi', 'Gorai.001G142800' => 'gra', 'Gorai.001G148700' => 'gra', 'Gorai.002G257300' => 'gra', 'Gorai.003G130000' => 'gra', 'Gorai.003G130100' => 'gra', 'Gorai.004G005300' => 'gra', 'Gorai.007G376500' => 'gra', 'Gorai.012G104700' => 'gra', 'GSVIVG01017946001' => 'vvi', 'GSVIVG01024928001' => 'vvi', 'GSVIVG01028227001' => 'vvi', 'GSVIVG01034151001' => 'vvi', 'HanXRQChr05g0135031' => 'han', 'HanXRQChr05g0135041' => 'han', 'HanXRQChr05g0140021' => 'han', 'HanXRQChr06g0178981' => 'han', 'HanXRQChr07g0188251' => 'han', 'HanXRQChr08g0235311' => 'han', 'HanXRQChr09g0271011' => 'han', 'HanXRQChr10g0293321' => 'han', 'HanXRQChr13g0388171' => 'han', 'Haze_00916' => 'cav', 'Haze_05063' => 'cav', 'Haze_20814' => 'cav', 'Haze_24128' => 'cav', 'Hma1.2p1_0745F.1_g212010' => 'hma', 'Hma1.2p1_0757F.1_g213260' => 'hma', 'Hma1.2p1_0936F.1_g238840' => 'hma', 'Hma1.2p1_1735F.1_g299890' => 'hma', 'Hma1.2p1_1861F.1_g305685' => 'hma', 'HPP92_003397' => 'vpl', 'HPP92_012597' => 'vpl', 'HPP92_015520' => 'vpl', 'HPP92_015539' => 'vpl', 'HPP92_020373' => 'vpl', 'Hund04938' => 'sun', 'Hund10677' => 'sun', 'Hund11033' => 'sun', 'Hund12155' => 'sun', 'Lalb_Chr01g0022551' => 'lal', 'Lalb_Chr03g0042341' => 'lal', 'Lalb_Chr07g0192931' => 'lal', 'Lalb_Chr12g0209551' => 'lal', 'Lalb_Chr19g0125251' => 'lal', 'Lalb_Chr19g0137891' => 'lal', 'Lalb_Chr21g0304641' => 'lal', 'Lalb_Chr21g0309881' => 'lal', 'Lj1A5T12' => 'lonja', 'Lj1C148G10' => 'lonja', 'Lj2A93T83' => 'lonja', 'Lj3A738G68' => 'lonja', 'Lj3C966T1' => 'lonja', 'Lj3g0018958' => 'lja', 'Lj3g0021831' => 'lja', 'Lj3g0025443' => 'lja', 'Lj4g0026809' => 'lja', 'Lj5g0012558' => 'lja', 'Lj5g0021586' => 'lja', 'Lsat_1_v5_gn_5_156840' => 'lsa', 'Lsat_1_v5_gn_8_73460' => 'lsa', 'Lsat_1_v5_gn_8_73481' => 'lsa', 'Lsat_1_v5_gn_9_31601' => 'lsa', 'Lsat_1_v5_gn_9_77320' => 'lsa', 'Manes.01G171300' => 'mes', 'Manes.01G171400' => 'mes', 'Manes.01G236100' => 'mes', 'Manes.02G130500' => 'mes', 'Manes.02G130600' => 'mes', 'Manes.03G180200' => 'mes', 'Manes.05G007000' => 'mes', 'Manes.08G084400' => 'mes', 'Manes.09G092600' => 'mes', 'Manes.15G027900' => 'mes', 'MBI04_g40948_MAGBIO' => 'mbi', 'MBI14_g12123_MAGBIO' => 'mbi', 'MBI18_g28915_MAGBIO' => 'mbi', 'MCO09G053' => 'mco', 'MCO11G782' => 'mco', 'MCO15G215' => 'mco', 'MD03G1088500' => 'mdo', 'MD03G1088600' => 'mdo', 'MD04G1130800' => 'mdo', 'MD09G1291700' => 'mdo', 'MD11G1097500' => 'mdo', 'MD11G1097600' => 'mdo', 'MD12G1143900' => 'mdo', 'MD13G1191400' => 'mdo', 'MD16G1191500' => 'mdo', 'Medtr1g085570' => 'mtr', 'Medtr1g104610' => 'mtr', 'Medtr2g097520' => 'mtr', 'Medtr4g021800' => 'mtr', 'Medtr4g021825' => 'mtr', 'Medtr4g064270' => 'mtr', 'Medtr4g064380' => 'mtr', 'Medtr7g062150' => 'mtr', 'MELO3C003138.2' => 'cme', 'MELO3C005187.2' => 'cme', 'MELO3C009252.2' => 'cme', 'MELO3C014481.2' => 'cme', 'MELO3C020616.2' => 'cme', 'MELO3C020617.2' => 'cme', 'MELO3C020618.2' => 'cme', 'Migut.G00328' => 'egut', 'Migut.J00320' => 'egut', 'Migut.L01000' => 'egut', 'Migut.L01953' => 'egut', 'MSTRG.10253' => 'ama', 'MSTRG.19077' => 'ama', 'MSTRG.26780' => 'ama', 'MSTRG.4023' => 'ama', 'MSTRG.5655' => 'ama', 'MSTRG.9992' => 'ama', 'Nitab4.5_0000043g0310' => 'nta', 'Nitab4.5_0000463g0080' => 'nta', 'Nitab4.5_0000705g0170' => 'nta', 'Nitab4.5_0001326g0060' => 'nta', 'Nitab4.5_0001628g0030' => 'nta', 'Nitab4.5_0002103g0110' => 'nta', 'Nitab4.5_0002946g0030' => 'nta', 'Nitab4.5_0004639g0030' => 'nta', 'Nn2g11149' => 'nnu', 'Nn2g13389' => 'nnu', 'Nn4g25326' => 'nnu', 'Nn4g26290' => 'nnu', 'Nn5g29865' => 'nnu', 'Oeu004163.1' => 'oeu', 'Oeu006901.1' => 'oeu', 'Oeu010096.1' => 'oeu', 'Oeu024340.1' => 'oeu', 'Oeu048369.1' => 'oeu', 'Os01g0973000' => 'osa', 'Os03g0273800' => 'osa', 'Os03g0701200' => 'osa', 'Os03g0834050' => 'osa', 'Os07g0634400' => 'osa', 'Peaxi162Scf00092g01414' => 'pax', 'Peaxi162Scf00165g00818' => 'pax', 'Peaxi162Scf00309g00516' => 'pax', 'Peaxi162Scf00774g00218' => 'pax', 'PGR004G1824' => 'pgr', 'PGR004G2606' => 'pgr', 'PGR031G2716' => 'pgr', 'PGR102G2460' => 'pgr', 'PGR142G2599' => 'pgr', 'PGSC0003DMG400000843' => 'stu', 'PGSC0003DMG400008829' => 'stu', 'PGSC0003DMG400030418' => 'stu', 'PGSC0003DMG400031834' => 'stu', 'PGSC0003DMG401028300' => 'stu', 'PGSC0003DMG402028300' => 'stu', 'Phvul.001G219300' => 'pvu', 'Phvul.007G056000' => 'pvu', 'Phvul.007G208000' => 'pvu', 'Phvul.008G119500' => 'pvu', 'Phvul.010G011200' => 'pvu', 'Phvul.010G014800' => 'pvu', 'Phvul.011G062900' => 'pvu', 'Phvul.L007043' => 'pvu', 'Potri.001G242300' => 'ptr', 'Potri.002G185300' => 'ptr', 'Potri.006G086900' => 'ptr', 'Potri.008G151700' => 'ptr', 'Potri.009G033500' => 'ptr', 'Potri.010G089300' => 'ptr', 'Potri.014G110800' => 'ptr', 'Pp3c27_8130' => 'ppa', 'Pp3c6_27410' => 'ppa', 'PRCOL_00001659' => 'pco', 'PRCOL_00001927' => 'pco', 'PRCOL_00003649' => 'pco', 'Prupe.1G011600' => 'ppe', 'Prupe.3G000800' => 'ppe', 'Prupe.3G001100' => 'ppe', 'Prupe.6G072700' => 'ppe', 'Prupe.6G072800' => 'ppe', 'Prupe.6G257300' => 'ppe', 'Prupe.8G033000' => 'ppe', 'Psat0s2633g0080' => 'psa', 'Psat0s3396g0080' => 'psa', 'Psat0s3396g0200' => 'psa', 'Psat3g139080' => 'psa', 'Psat5g285080' => 'psa', 'Psat6g157760' => 'psa', 'Psat6g208440' => 'psa', 'Psat7g215320' => 'psa', 'Psat7g215400' => 'psa', 'Psat7g235600' => 'psa', 'Psat7g235760' => 'psa', 'PSO063G4603' => 'pso', 'PSO210G0182' => 'pso', 'PSO210G0196' => 'pso', 'PSO339G0394' => 'pso', 'PSO339G4127' => 'pso', 'PSO513G0064' => 'pso', 'PSO761G0079' => 'pso', 'QL01p031003' => 'qlo', 'QL01p031078' => 'qlo', 'QL06p003004' => 'qlo', 'QL07p048731' => 'qlo', 'QL09p037427' => 'qlo', 'RcHm_v2.0_Chr3g0466361' => 'rch', 'RcHm_v2.0_Chr3g0485571' => 'rch', 'RcHm_v2.0_Chr4g0416551' => 'rch', 'RcHm_v2.0_Chr5g0065831' => 'rch', 'Rhsim01G0230500' => 'rsi', 'Rhsim05G0194000' => 'rsi', 'Rhsim08G0250400' => 'rsi', 'Sabra02G0131000' => 'sbr', 'Sabra06G0066300' => 'sbr', 'Sabra08G0115500' => 'sbr', 'Sabra09G0023900' => 'sbr', 'Sabra10G0054000' => 'sbr', 'Sabra14G0081500' => 'sbr', 'Sabra16G0147100' => 'sbr', 'SalBow2G2957' => 'sbo', 'SalBow4G3320' => 'sbo', 'SalBow8G1894' => 'sbo', 'Sc07g0007950' => 'sci', 'Sc12g0001360' => 'sci', 'Sc13g0004330' => 'sci', 'Sc20g0005010' => 'sci', 'Sed0000361' => 'sed', 'Sed0001706' => 'sed', 'Sed0002422' => 'sed', 'Sed0004029' => 'sed', 'Sed0004602' => 'sed', 'Sed0004943' => 'sed', 'Sed0008646' => 'sed', 'Sed0023313' => 'sed', 'Sed0024843' => 'sed', 'SEGI_00081' => 'sgi', 'SEGI_00947' => 'sgi', 'SEGI_04046' => 'sgi', 'SEGI_06880' => 'sgi', 'SEGI_09736' => 'sgi', 'SEGI_12741' => 'sgi', 'SEGI_14530' => 'sgi', 'SEGI_20705' => 'sgi', 'SEGI_26088' => 'sgi', 'SEGI_28323' => 'sgi', 'SEGI_33343' => 'sgi', 'SGA_v2.0_scaffold126G33775' => 'sas', 'SGA_v2.0_scaffold2G01337' => 'sas', 'SGA_v2.0_scaffold38G15006' => 'sas', 'SGA_v2.0_scaffold39G15264' => 'sas', 'SGA_v2.0_scaffold453G51880' => 'sas', 'SHI12696' => 'shi', 'SMO367G1096' => 'smo', 'Solyc01g068630.3' => 'sly', 'Solyc05g011880.3' => 'sly', 'Solyc06g076300.3' => 'sly', 'Solyc09g010940.4' => 'sly', 'Solyc09g075890.3' => 'sly', 'Sopen01g030560' => 'spe', 'Sopen05g006630' => 'spe', 'Sopen06g032720' => 'spe', 'Sopen09g005660' => 'spe', 'Sopen09g030690' => 'spe', 'Sp4g14540' => 'spa', 'Sp4g20030' => 'spa', 'Sp5g01320' => 'spa', 'Sp6g21170' => 'spa', 'Sp6g21180' => 'spa', 'Sp6g21190' => 'spa', 'Sp6g40220' => 'spa', 'TAR362G0122' => 'tar', 'TAR362G1338' => 'tar', 'TAR369G0590' => 'tar', 'TAR371G0824' => 'tar', 'TAR622G1429' => 'tar', 'TAR623G0734' => 'tar', 'TAR625G0441' => 'tar', 'TAR629G0976' => 'tar', 'TAR633G1195' => 'tar', 'TAR636G2660' => 'tar', 'THA.LOC104799440' => 'tha', 'THA.LOC104800966' => 'tha', 'THA.LOC104806559' => 'tha', 'THA.LOC104810765' => 'tha', 'THA.LOC104816266' => 'tha', 'THA.LOC104817419' => 'tha', 'THA.LOC104827021' => 'tha', 'Thecc.01G327400' => 'tca', 'Thecc.04G229200' => 'tca', 'Thecc.05G037400' => 'tca', 'Thecc.09G318600' => 'tca', 'Thecc.09G318700' => 'tca', 'Thhalv10006238m.g' => 'esa', 'Thhalv10014321m.g' => 'esa', 'Thhalv10014335m.g' => 'esa', 'Thhalv10015826m.g' => 'esa', 'Thhalv10017107m.g' => 'esa', 'Thhalv10017180m.g' => 'esa', 'Thhalv10029339m.g' => 'esa', 'TPR.G1699' => 'tpr', 'TPR.G23609' => 'tpr', 'TPR.G3081' => 'tpr', 'TPR.G40397' => 'tpr', 'TPR.G5522' => 'tpr', 'TPR.G5618' => 'tpr', 'TPR.G5626' => 'tpr', 'TWI09G1632' => 'twi', 'TWI23G1230' => 'twi', 'TWI53G1064' => 'twi', 'TWI59G0751' => 'twi', 'TWI74G0947' => 'twi', 'TWI77G0337' => 'twi', 'TWI79G1254' => 'twi', 'unitig_0.g2341' => 'ugi', 'unitig_26.g10006' => 'ugi', 'unitig_26.g10008' => 'ugi', 'unitig_26.g9192' => 'ugi', 'vmacro14547' => 'vma', 'vmacro15333' => 'vma', 'vmacro18743' => 'vma', 'vmacro20166' => 'vma', 'VMungo0331G0523' => 'vmu', 'VMungo0331G1202' => 'vmu', 'VMungo0720G1228' => 'vmu', 'VMungo0720G1514' => 'vmu', 'VMungo1080G0169' => 'vmu', 'VMungo1127G1475' => 'vmu', 'VMungo1383G1208' => 'vmu', 'VMungo1383G1698' => 'vmu', 'Zm00001eb012270' => 'zma', 'Zm00001eb054100' => 'zma', 'Zm00001eb063350' => 'zma', 'Zm00001eb328560' => 'zma', 'Zm00001eb342820' => 'zma', 'Zm00001eb362210' => 'zma', 'Zm00001eb397730' => 'zma', 'Zm00001eb399750' => 'zma' ) $gf_id = 'HOM05D000959' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000959' ) $data_identifier = 'HOM05D000959' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 5, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 5, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 10, 'mbi' => (int) 3, 'mco' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 2, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 3, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 11, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399750' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000959', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '622', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p07100' => 'bna', 'A03p11720' => 'bna', 'A05p08300' => 'bna', 'A05p13380' => 'bna', 'A09p54130' => 'bna', 'A10p16690' => 'bna', 'A10p16700' => 'bna', 'A10p33390' => 'bna', 'Aa31LG10G16020' => 'aar', 'Aa31LG1G11810' => 'aar', 'Aa31LG1G11830' => 'aar', 'Aa31LG1G22510' => 'aar', 'Aa31LG5G4890' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5793' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2310' => 'aag', 'Actinidia08499' => 'ach', 'Actinidia11262' => 'ach', 'Actinidia23926' => 'ach', 'Actinidia34420' => 'ach', 'Actinidia36970' => 'ach', 'Ah.02g111220' => 'amhyb', 'Ah.15g097750' => 'amhyb', 'AL4G27500' => 'aly', 'AL6G11470' => 'aly', 'AL8G35950' => 'aly', 'AL8G35960' => 'aly', 'AL8G35970' => 'aly', 'Aqoxy1G00912' => 'aox', 'Aqoxy2G02253' => 'aox', 'Aqoxy2G02411' => 'aox', 'Aqoxy5G00485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BZ66YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K8ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM4FUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6BF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HFV7XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25JBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0YNNV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MAKK6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P70IT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP2Z6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V61LZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YWP64R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3S9AI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7PGHH' => 'arhy', 'AT2G32150' => 'ath', 'AT3G62040' => 'ath', 'AT5G02230' => 'ath', 'AT5G59480' => 'ath', 'AT5G59490' => 'ath', 'ATR0332G060' => 'atr', 'ATR0559G190' => 'atr', 'ATR0693G294' => 'atr', 'Atru.chr3.3975' => 'acertr', 'Atru.chr3.3976' => 'acertr', 'Atru.chr3.3977' => 'acertr', 'Atru.chr4.2498' => 'acertr', 'Atru.chr5.838' => 'acertr', 'Atru.chr8.1990' => 'acertr', 'Atru.chr8.1991' => 'acertr', 'Atru.chr8.1992' => 'acertr', 'AUR62001759' => 'cqu', 'AUR62009545' => 'cqu', 'AUR62010474' => 'cqu', 'AUR62025820' => 'cqu', 'AUR62030422' => 'cqu', 'AUR62033605' => 'cqu', 'AUR62038615' => 'cqu', 'AUR62041347' => 'cqu', 'BcaB01g04574' => 'bca', 'BcaB02g09263' => 'bca', 'BcaB02g10453' => 'bca', 'BcaB05g22513' => 'bca', 'BcaB08g36253' => 'bca', 'BcaB08g36254' => 'bca', 'BcaC01g06519' => 'bca', 'BcaC02g11889' => 'bca', 'BcaC03g14010' => 'bca', 'BcaC03g18439' => 'bca', 'BcaC04g19765' => 'bca', 'BcaC09g48432' => 'bca', 'BcaNung07302' => 'bca', 'BolC2t06040H' => 'bol', 'BolC2t07346H' => 'bol', 'BolC3t13817H' => 'bol', 'BolC4t22625H' => 'bol', 'BolC4t23297H' => 'bol', 'BolC8t51278H' => 'bol', 'BolC9t58050H' => 'bol', 'BolC9t58051H' => 'bol', 'BolC9t60163H' => 'bol', 'BraA02t04712Z' => 'bra', 'BraA02t05791Z' => 'bra', 'BraA03t10483Z' => 'bra', 'BraA05t19795Z' => 'bra', 'BraA05t20276Z' => 'bra', 'BraA09t40827Z' => 'bra', 'BraA10t43750Z' => 'bra', 'BraA10t43751Z' => 'bra', 'BraA10t45370Z' => 'bra', 'C02p00400' => 'bna', 'C02p12460' => 'bna', 'C03p13680' => 'bna', 'C04p10270' => 'bna', 'C04p17500' => 'bna', 'C08p37010' => 'bna', 'C09p51880' => 'bna', 'C09p51890' => 'bna', 'C09p74300' => 'bna', 'CAN.G179.26' => 'can', 'CAN.G3384.1' => 'can', 'CAN.G394.68' => 'can', 'CAN.G907.13' => 'can', 'CANSAT11G0012' => 'cansat', 'CANSAT25G1586' => 'cansat', 'CANSAT35G0735' => 'cansat', 'CANSAT54G0556' => 'cansat', 'CANSAT64G0356' => 'cansat', 'CANSAT78G2042' => 'cansat', 'CARHR125920' => 'chi', 'CARHR131910' => 'chi', 'CARHR172390' => 'chi', 'CARHR211140' => 'chi', 'CARHR285850' => 'chi', 'CARHR285860' => 'chi', 'Carub.0004s1347' => 'cru', 'Carub.0004s1960' => 'cru', 'Carub.0005s2880' => 'cru', 'Carub.0006s0107' => 'cru', 'Carub.0008s2015' => 'cru', 'Carub.0008s2016' => 'cru', 'Carub.0008s2017' => 'cru', 'Ca_01315_v3' => 'car', 'Ca_05063_v3' => 'car', 'Ca_10231_v3' => 'car', 'Ca_10913_v3' => 'car', 'Ca_19156_v3' => 'car', 'Ca_23644_v3' => 'car', 'Ca_26735_v3' => 'car', 'Cc01_g13130' => 'ccan', 'Cc02_g21690' => 'ccan', 'Cc03_g03600' => 'ccan', 'Cc06_g02510' => 'ccan', 'CDE02G1265' => 'cde', 'CDE05G0415' => 'cde', 'CDE08G1082' => 'cde', 'Cfa005780' => 'cfa', 'Cfa011522' => 'cfa', 'Cfa011523' => 'cfa', 'Cfa015627' => 'cfa', 'Cfa017359' => 'cfa', 'Ciclev10005687m.g' => 'ccl', 'Ciclev10012173m.g' => 'ccl', 'Ciclev10021621m.g' => 'ccl', 'Ciclev10028968m.g' => 'ccl', 'Ciclev10029907m.g' => 'ccl', 'CiPaw.01G164800' => 'cil', 'CiPaw.07G083700' => 'cil', 'CiPaw.07G127000' => 'cil', 'CiPaw.07G136900' => 'cil', 'CiPaw.08G081700' => 'cil', 'CiPaw.09G194600' => 'cil', 'CiPaw.10G146500' => 'cil', 'CiPaw.13G091500' => 'cil', 'CiPaw.13G091600' => 'cil', 'ClCG00G003390' => 'cla', 'ClCG01G007220' => 'cla', 'ClCG03G001370' => 'cla', 'ClCG04G008100' => 'cla', 'ClCG06G006110' => 'cla', 'ClCG06G006130' => 'cla', 'ClCG10G021210' => 'cla', 'COL.COLO4_07648' => 'col', 'COL.COLO4_07650' => 'col', 'COL.COLO4_07651' => 'col', 'COL.COLO4_14780' => 'col', 'COL.COLO4_18546' => 'col', 'COL.COLO4_18547' => 'col', 'COL.COLO4_23103' => 'col', 'COL.COLO4_30419' => 'col', 'COL.COLO4_34232' => 'col', 'Cpa.g.sc169.20' => 'cpa', 'Cpa.g.sc57.45' => 'cpa', 'Cpa.g.sc58.124' => 'cpa', 'Cpa.g.sc58.125' => 'cpa', 'Cpa.g.sc81.118' => 'cpa', 'Cpa.g.sc81.119' => 'cpa', 'Cre12.g524700' => 'cre', 'CsaV3_1G034430' => 'csa', 'CsaV3_1G034440' => 'csa', 'CsaV3_1G034450' => 'csa', 'CsaV3_3G034830' => 'csa', 'CsaV3_4G025090' => 'csa', 'CsaV3_5G018660' => 'csa', 'CsaV3_6G038160' => 'csa', 'CSS0003447' => 'camsi', 'CSS0017840' => 'camsi', 'CSS0019260' => 'camsi', 'CSS0040375' => 'camsi', 'CSS0042533' => 'camsi', 'DCAR_005960' => 'dca', 'DCAR_012104' => 'dca', 'DCAR_012105' => 'dca', 'DCAR_012293' => 'dca', 'DCAR_015632' => 'dca', 'DCAR_024602' => 'dca', 'DCAR_028752' => 'dca', 'Dinv06261' => 'din', 'Dinv13982' => 'din', 'Dinv17029' => 'din', 'Dinv18463' => 'din', 'Dinv33181' => 'din', 'Dinv35585' => 'din', 'Dinv37161' => 'din', 'Dinv42977' => 'din', 'Dinv43122' => 'din', 'Dinv44517' => 'din', 'Duzib093G0256' => 'dzi', 'Duzib106G1254' => 'dzi', 'Duzib128G1789' => 'dzi', 'Duzib133G0633' => 'dzi', 'Duzib138G0510' => 'dzi', 'Duzib150G1084' => 'dzi', 'Duzib168G0488' => 'dzi', 'Duzib168G1523' => 'dzi', 'Duzib170G0133' => 'dzi', 'ECA234G1433' => 'eca', 'ECA236G1432' => 'eca', 'ECA236G2256' => 'eca', 'ECA236G2365' => 'eca', 'ECA236G4830' => 'eca', 'ECA248G1505' => 'eca', 'EL10Ac3g06431' => 'bvu', 'EL10Ac5g12577' => 'bvu', 'EL10Ac6g13533' => 'bvu', 'EL10Ac7g16045' => 'bvu', 'Eucgr.A01281' => 'egr', 'Eucgr.B02326' => 'egr', 'Eucgr.H03532' => 'egr', 'Eucgr.K00553' => 'egr', 'Eucgr.K03116' => 'egr', 'FAN02G3963' => 'fan', 'FAN05G0438' => 'fan', 'FAN09G2434' => 'fan', 'FAN12G3984' => 'fan', 'FAN14G0798' => 'fan', 'FAN17G0652' => 'fan', 'FAN19G1988' => 'fan', 'FAN22G0632' => 'fan', 'FAN23G0387' => 'fan', 'FAN26G1323' => 'fan', 'FAN28G0666' => 'fan', 'FvH4_1g26080' => 'fve', 'FvH4_3g36780' => 'fve', 'FvH4_4g15270' => 'fve', 'FvH4_6g13490' => 'fve', 'Glyma.01G098700' => 'gma', 'Glyma.03G065900' => 'gma', 'Glyma.03G073754' => 'gma', 'Glyma.03G073758' => 'gma', 'Glyma.03G083200' => 'gma', 'Glyma.03G225500' => 'gma', 'Glyma.05G037766' => 'gma', 'Glyma.07G133500' => 'gma', 'Glyma.10G139400' => 'gma', 'Glyma.10G248900' => 'gma', 'Glyma.11G137800' => 'gma', 'Glyma.12G061300' => 'gma', 'Glyma.13G337900' => 'gma', 'Glyma.15G036600' => 'gma', 'Glyma.18G182800' => 'gma', 'Glyma.19G222500' => 'gma', 'Glyma.20G144800' => 'gma', 'Gohir.A01G222000' => 'ghi', 'Gohir.A03G044000' => 'ghi', 'Gohir.A03G044100' => 'ghi', 'Gohir.A04G083100' => 'ghi', 'Gohir.A07G127200' => 'ghi', 'Gohir.A07G132400' => 'ghi', 'Gohir.A08G000700' => 'ghi', 'Gohir.A11G327300' => 'ghi', 'Gohir.D01G211500' => 'ghi', 'Gohir.D03G123400' => 'ghi', 'Gohir.D03G123500' => 'ghi', 'Gohir.D04G121800' => 'ghi', 'Gohir.D07G131500' => 'ghi', 'Gohir.D07G136600' => 'ghi', 'Gohir.D08G011600' => 'ghi', 'Gohir.D11G346200' => 'ghi', 'Gorai.001G142800' => 'gra', 'Gorai.001G148700' => 'gra', 'Gorai.002G257300' => 'gra', 'Gorai.003G130000' => 'gra', 'Gorai.003G130100' => 'gra', 'Gorai.004G005300' => 'gra', 'Gorai.007G376500' => 'gra', 'Gorai.012G104700' => 'gra', 'GSVIVG01017946001' => 'vvi', 'GSVIVG01024928001' => 'vvi', 'GSVIVG01028227001' => 'vvi', 'GSVIVG01034151001' => 'vvi', 'HanXRQChr05g0135031' => 'han', 'HanXRQChr05g0135041' => 'han', 'HanXRQChr05g0140021' => 'han', 'HanXRQChr06g0178981' => 'han', 'HanXRQChr07g0188251' => 'han', 'HanXRQChr08g0235311' => 'han', 'HanXRQChr09g0271011' => 'han', 'HanXRQChr10g0293321' => 'han', 'HanXRQChr13g0388171' => 'han', 'Haze_00916' => 'cav', 'Haze_05063' => 'cav', 'Haze_20814' => 'cav', 'Haze_24128' => 'cav', 'Hma1.2p1_0745F.1_g212010' => 'hma', 'Hma1.2p1_0757F.1_g213260' => 'hma', 'Hma1.2p1_0936F.1_g238840' => 'hma', 'Hma1.2p1_1735F.1_g299890' => 'hma', 'Hma1.2p1_1861F.1_g305685' => 'hma', 'HPP92_003397' => 'vpl', 'HPP92_012597' => 'vpl', 'HPP92_015520' => 'vpl', 'HPP92_015539' => 'vpl', 'HPP92_020373' => 'vpl', 'Hund04938' => 'sun', 'Hund10677' => 'sun', 'Hund11033' => 'sun', 'Hund12155' => 'sun', 'Lalb_Chr01g0022551' => 'lal', 'Lalb_Chr03g0042341' => 'lal', 'Lalb_Chr07g0192931' => 'lal', 'Lalb_Chr12g0209551' => 'lal', 'Lalb_Chr19g0125251' => 'lal', 'Lalb_Chr19g0137891' => 'lal', 'Lalb_Chr21g0304641' => 'lal', 'Lalb_Chr21g0309881' => 'lal', 'Lj1A5T12' => 'lonja', 'Lj1C148G10' => 'lonja', 'Lj2A93T83' => 'lonja', 'Lj3A738G68' => 'lonja', 'Lj3C966T1' => 'lonja', 'Lj3g0018958' => 'lja', 'Lj3g0021831' => 'lja', 'Lj3g0025443' => 'lja', 'Lj4g0026809' => 'lja', 'Lj5g0012558' => 'lja', 'Lj5g0021586' => 'lja', 'Lsat_1_v5_gn_5_156840' => 'lsa', 'Lsat_1_v5_gn_8_73460' => 'lsa', 'Lsat_1_v5_gn_8_73481' => 'lsa', 'Lsat_1_v5_gn_9_31601' => 'lsa', 'Lsat_1_v5_gn_9_77320' => 'lsa', 'Manes.01G171300' => 'mes', 'Manes.01G171400' => 'mes', 'Manes.01G236100' => 'mes', 'Manes.02G130500' => 'mes', 'Manes.02G130600' => 'mes', 'Manes.03G180200' => 'mes', 'Manes.05G007000' => 'mes', 'Manes.08G084400' => 'mes', 'Manes.09G092600' => 'mes', 'Manes.15G027900' => 'mes', 'MBI04_g40948_MAGBIO' => 'mbi', 'MBI14_g12123_MAGBIO' => 'mbi', 'MBI18_g28915_MAGBIO' => 'mbi', 'MCO09G053' => 'mco', 'MCO11G782' => 'mco', 'MCO15G215' => 'mco', 'MD03G1088500' => 'mdo', 'MD03G1088600' => 'mdo', 'MD04G1130800' => 'mdo', 'MD09G1291700' => 'mdo', 'MD11G1097500' => 'mdo', 'MD11G1097600' => 'mdo', 'MD12G1143900' => 'mdo', 'MD13G1191400' => 'mdo', 'MD16G1191500' => 'mdo', 'Medtr1g085570' => 'mtr', 'Medtr1g104610' => 'mtr', 'Medtr2g097520' => 'mtr', 'Medtr4g021800' => 'mtr', 'Medtr4g021825' => 'mtr', 'Medtr4g064270' => 'mtr', 'Medtr4g064380' => 'mtr', 'Medtr7g062150' => 'mtr', 'MELO3C003138.2' => 'cme', 'MELO3C005187.2' => 'cme', 'MELO3C009252.2' => 'cme', 'MELO3C014481.2' => 'cme', 'MELO3C020616.2' => 'cme', 'MELO3C020617.2' => 'cme', 'MELO3C020618.2' => 'cme', 'Migut.G00328' => 'egut', 'Migut.J00320' => 'egut', 'Migut.L01000' => 'egut', 'Migut.L01953' => 'egut', 'MSTRG.10253' => 'ama', 'MSTRG.19077' => 'ama', 'MSTRG.26780' => 'ama', 'MSTRG.4023' => 'ama', 'MSTRG.5655' => 'ama', 'MSTRG.9992' => 'ama', 'Nitab4.5_0000043g0310' => 'nta', 'Nitab4.5_0000463g0080' => 'nta', 'Nitab4.5_0000705g0170' => 'nta', 'Nitab4.5_0001326g0060' => 'nta', 'Nitab4.5_0001628g0030' => 'nta', 'Nitab4.5_0002103g0110' => 'nta', 'Nitab4.5_0002946g0030' => 'nta', 'Nitab4.5_0004639g0030' => 'nta', 'Nn2g11149' => 'nnu', 'Nn2g13389' => 'nnu', 'Nn4g25326' => 'nnu', 'Nn4g26290' => 'nnu', 'Nn5g29865' => 'nnu', 'Oeu004163.1' => 'oeu', 'Oeu006901.1' => 'oeu', 'Oeu010096.1' => 'oeu', 'Oeu024340.1' => 'oeu', 'Oeu048369.1' => 'oeu', 'Os01g0973000' => 'osa', 'Os03g0273800' => 'osa', 'Os03g0701200' => 'osa', 'Os03g0834050' => 'osa', 'Os07g0634400' => 'osa', 'Peaxi162Scf00092g01414' => 'pax', 'Peaxi162Scf00165g00818' => 'pax', 'Peaxi162Scf00309g00516' => 'pax', 'Peaxi162Scf00774g00218' => 'pax', 'PGR004G1824' => 'pgr', 'PGR004G2606' => 'pgr', 'PGR031G2716' => 'pgr', 'PGR102G2460' => 'pgr', 'PGR142G2599' => 'pgr', 'PGSC0003DMG400000843' => 'stu', 'PGSC0003DMG400008829' => 'stu', 'PGSC0003DMG400030418' => 'stu', 'PGSC0003DMG400031834' => 'stu', 'PGSC0003DMG401028300' => 'stu', 'PGSC0003DMG402028300' => 'stu', 'Phvul.001G219300' => 'pvu', 'Phvul.007G056000' => 'pvu', 'Phvul.007G208000' => 'pvu', 'Phvul.008G119500' => 'pvu', 'Phvul.010G011200' => 'pvu', 'Phvul.010G014800' => 'pvu', 'Phvul.011G062900' => 'pvu', 'Phvul.L007043' => 'pvu', 'Potri.001G242300' => 'ptr', 'Potri.002G185300' => 'ptr', 'Potri.006G086900' => 'ptr', 'Potri.008G151700' => 'ptr', 'Potri.009G033500' => 'ptr', 'Potri.010G089300' => 'ptr', 'Potri.014G110800' => 'ptr', 'Pp3c27_8130' => 'ppa', 'Pp3c6_27410' => 'ppa', 'PRCOL_00001659' => 'pco', 'PRCOL_00001927' => 'pco', 'PRCOL_00003649' => 'pco', 'Prupe.1G011600' => 'ppe', 'Prupe.3G000800' => 'ppe', 'Prupe.3G001100' => 'ppe', 'Prupe.6G072700' => 'ppe', 'Prupe.6G072800' => 'ppe', 'Prupe.6G257300' => 'ppe', 'Prupe.8G033000' => 'ppe', 'Psat0s2633g0080' => 'psa', 'Psat0s3396g0080' => 'psa', 'Psat0s3396g0200' => 'psa', 'Psat3g139080' => 'psa', 'Psat5g285080' => 'psa', 'Psat6g157760' => 'psa', 'Psat6g208440' => 'psa', 'Psat7g215320' => 'psa', 'Psat7g215400' => 'psa', 'Psat7g235600' => 'psa', 'Psat7g235760' => 'psa', 'PSO063G4603' => 'pso', 'PSO210G0182' => 'pso', 'PSO210G0196' => 'pso', 'PSO339G0394' => 'pso', 'PSO339G4127' => 'pso', 'PSO513G0064' => 'pso', 'PSO761G0079' => 'pso', 'QL01p031003' => 'qlo', 'QL01p031078' => 'qlo', 'QL06p003004' => 'qlo', 'QL07p048731' => 'qlo', 'QL09p037427' => 'qlo', 'RcHm_v2.0_Chr3g0466361' => 'rch', 'RcHm_v2.0_Chr3g0485571' => 'rch', 'RcHm_v2.0_Chr4g0416551' => 'rch', 'RcHm_v2.0_Chr5g0065831' => 'rch', 'Rhsim01G0230500' => 'rsi', 'Rhsim05G0194000' => 'rsi', 'Rhsim08G0250400' => 'rsi', 'Sabra02G0131000' => 'sbr', 'Sabra06G0066300' => 'sbr', 'Sabra08G0115500' => 'sbr', 'Sabra09G0023900' => 'sbr', 'Sabra10G0054000' => 'sbr', 'Sabra14G0081500' => 'sbr', 'Sabra16G0147100' => 'sbr', 'SalBow2G2957' => 'sbo', 'SalBow4G3320' => 'sbo', 'SalBow8G1894' => 'sbo', 'Sc07g0007950' => 'sci', 'Sc12g0001360' => 'sci', 'Sc13g0004330' => 'sci', 'Sc20g0005010' => 'sci', 'Sed0000361' => 'sed', 'Sed0001706' => 'sed', 'Sed0002422' => 'sed', 'Sed0004029' => 'sed', 'Sed0004602' => 'sed', 'Sed0004943' => 'sed', 'Sed0008646' => 'sed', 'Sed0023313' => 'sed', 'Sed0024843' => 'sed', 'SEGI_00081' => 'sgi', 'SEGI_00947' => 'sgi', 'SEGI_04046' => 'sgi', 'SEGI_06880' => 'sgi', 'SEGI_09736' => 'sgi', 'SEGI_12741' => 'sgi', 'SEGI_14530' => 'sgi', 'SEGI_20705' => 'sgi', 'SEGI_26088' => 'sgi', 'SEGI_28323' => 'sgi', 'SEGI_33343' => 'sgi', 'SGA_v2.0_scaffold126G33775' => 'sas', 'SGA_v2.0_scaffold2G01337' => 'sas', 'SGA_v2.0_scaffold38G15006' => 'sas', 'SGA_v2.0_scaffold39G15264' => 'sas', 'SGA_v2.0_scaffold453G51880' => 'sas', 'SHI12696' => 'shi', 'SMO367G1096' => 'smo', 'Solyc01g068630.3' => 'sly', 'Solyc05g011880.3' => 'sly', 'Solyc06g076300.3' => 'sly', 'Solyc09g010940.4' => 'sly', 'Solyc09g075890.3' => 'sly', 'Sopen01g030560' => 'spe', 'Sopen05g006630' => 'spe', 'Sopen06g032720' => 'spe', 'Sopen09g005660' => 'spe', 'Sopen09g030690' => 'spe', 'Sp4g14540' => 'spa', 'Sp4g20030' => 'spa', 'Sp5g01320' => 'spa', 'Sp6g21170' => 'spa', 'Sp6g21180' => 'spa', 'Sp6g21190' => 'spa', 'Sp6g40220' => 'spa', 'TAR362G0122' => 'tar', 'TAR362G1338' => 'tar', 'TAR369G0590' => 'tar', 'TAR371G0824' => 'tar', 'TAR622G1429' => 'tar', 'TAR623G0734' => 'tar', 'TAR625G0441' => 'tar', 'TAR629G0976' => 'tar', 'TAR633G1195' => 'tar', 'TAR636G2660' => 'tar', 'THA.LOC104799440' => 'tha', 'THA.LOC104800966' => 'tha', 'THA.LOC104806559' => 'tha', 'THA.LOC104810765' => 'tha', 'THA.LOC104816266' => 'tha', 'THA.LOC104817419' => 'tha', 'THA.LOC104827021' => 'tha', 'Thecc.01G327400' => 'tca', 'Thecc.04G229200' => 'tca', 'Thecc.05G037400' => 'tca', 'Thecc.09G318600' => 'tca', 'Thecc.09G318700' => 'tca', 'Thhalv10006238m.g' => 'esa', 'Thhalv10014321m.g' => 'esa', 'Thhalv10014335m.g' => 'esa', 'Thhalv10015826m.g' => 'esa', 'Thhalv10017107m.g' => 'esa', 'Thhalv10017180m.g' => 'esa', 'Thhalv10029339m.g' => 'esa', 'TPR.G1699' => 'tpr', 'TPR.G23609' => 'tpr', 'TPR.G3081' => 'tpr', 'TPR.G40397' => 'tpr', 'TPR.G5522' => 'tpr', 'TPR.G5618' => 'tpr', 'TPR.G5626' => 'tpr', 'TWI09G1632' => 'twi', 'TWI23G1230' => 'twi', 'TWI53G1064' => 'twi', 'TWI59G0751' => 'twi', 'TWI74G0947' => 'twi', 'TWI77G0337' => 'twi', 'TWI79G1254' => 'twi', 'unitig_0.g2341' => 'ugi', 'unitig_26.g10006' => 'ugi', 'unitig_26.g10008' => 'ugi', 'unitig_26.g9192' => 'ugi', 'vmacro14547' => 'vma', 'vmacro15333' => 'vma', 'vmacro18743' => 'vma', 'vmacro20166' => 'vma', 'VMungo0331G0523' => 'vmu', 'VMungo0331G1202' => 'vmu', 'VMungo0720G1228' => 'vmu', 'VMungo0720G1514' => 'vmu', 'VMungo1080G0169' => 'vmu', 'VMungo1127G1475' => 'vmu', 'VMungo1383G1208' => 'vmu', 'VMungo1383G1698' => 'vmu', 'Zm00001eb012270' => 'zma', 'Zm00001eb054100' => 'zma', 'Zm00001eb063350' => 'zma', 'Zm00001eb328560' => 'zma', 'Zm00001eb342820' => 'zma', 'Zm00001eb362210' => 'zma', 'Zm00001eb397730' => 'zma', 'Zm00001eb399750' => 'zma' ), 'gf_id' => 'HOM05D000959', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000959' ), 'data_identifier' => 'HOM05D000959', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000959', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '622', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p07100' => 'bna', 'A03p11720' => 'bna', 'A05p08300' => 'bna', 'A05p13380' => 'bna', 'A09p54130' => 'bna', 'A10p16690' => 'bna', 'A10p16700' => 'bna', 'A10p33390' => 'bna', 'Aa31LG10G16020' => 'aar', 'Aa31LG1G11810' => 'aar', 'Aa31LG1G11830' => 'aar', 'Aa31LG1G22510' => 'aar', 'Aa31LG5G4890' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5793' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2310' => 'aag', 'Actinidia08499' => 'ach', 'Actinidia11262' => 'ach', 'Actinidia23926' => 'ach', 'Actinidia34420' => 'ach', 'Actinidia36970' => 'ach', 'Ah.02g111220' => 'amhyb', 'Ah.15g097750' => 'amhyb', 'AL4G27500' => 'aly', 'AL6G11470' => 'aly', 'AL8G35950' => 'aly', 'AL8G35960' => 'aly', 'AL8G35970' => 'aly', 'Aqoxy1G00912' => 'aox', 'Aqoxy2G02253' => 'aox', 'Aqoxy2G02411' => 'aox', 'Aqoxy5G00485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BZ66YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K8ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM4FUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6BF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HFV7XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25JBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0YNNV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MAKK6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P70IT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP2Z6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V61LZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YWP64R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3S9AI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7PGHH' => 'arhy', 'AT2G32150' => 'ath', 'AT3G62040' => 'ath', 'AT5G02230' => 'ath', 'AT5G59480' => 'ath', 'AT5G59490' => 'ath', 'ATR0332G060' => 'atr', 'ATR0559G190' => 'atr', 'ATR0693G294' => 'atr', 'Atru.chr3.3975' => 'acertr', 'Atru.chr3.3976' => 'acertr', 'Atru.chr3.3977' => 'acertr', 'Atru.chr4.2498' => 'acertr', 'Atru.chr5.838' => 'acertr', 'Atru.chr8.1990' => 'acertr', 'Atru.chr8.1991' => 'acertr', 'Atru.chr8.1992' => 'acertr', 'AUR62001759' => 'cqu', 'AUR62009545' => 'cqu', 'AUR62010474' => 'cqu', 'AUR62025820' => 'cqu', 'AUR62030422' => 'cqu', 'AUR62033605' => 'cqu', 'AUR62038615' => 'cqu', 'AUR62041347' => 'cqu', 'BcaB01g04574' => 'bca', 'BcaB02g09263' => 'bca', 'BcaB02g10453' => 'bca', 'BcaB05g22513' => 'bca', 'BcaB08g36253' => 'bca', 'BcaB08g36254' => 'bca', 'BcaC01g06519' => 'bca', 'BcaC02g11889' => 'bca', 'BcaC03g14010' => 'bca', 'BcaC03g18439' => 'bca', 'BcaC04g19765' => 'bca', 'BcaC09g48432' => 'bca', 'BcaNung07302' => 'bca', 'BolC2t06040H' => 'bol', 'BolC2t07346H' => 'bol', 'BolC3t13817H' => 'bol', 'BolC4t22625H' => 'bol', 'BolC4t23297H' => 'bol', 'BolC8t51278H' => 'bol', 'BolC9t58050H' => 'bol', 'BolC9t58051H' => 'bol', 'BolC9t60163H' => 'bol', 'BraA02t04712Z' => 'bra', 'BraA02t05791Z' => 'bra', 'BraA03t10483Z' => 'bra', 'BraA05t19795Z' => 'bra', 'BraA05t20276Z' => 'bra', 'BraA09t40827Z' => 'bra', 'BraA10t43750Z' => 'bra', 'BraA10t43751Z' => 'bra', 'BraA10t45370Z' => 'bra', 'C02p00400' => 'bna', 'C02p12460' => 'bna', 'C03p13680' => 'bna', 'C04p10270' => 'bna', 'C04p17500' => 'bna', 'C08p37010' => 'bna', 'C09p51880' => 'bna', 'C09p51890' => 'bna', 'C09p74300' => 'bna', 'CAN.G179.26' => 'can', 'CAN.G3384.1' => 'can', 'CAN.G394.68' => 'can', 'CAN.G907.13' => 'can', 'CANSAT11G0012' => 'cansat', 'CANSAT25G1586' => 'cansat', 'CANSAT35G0735' => 'cansat', 'CANSAT54G0556' => 'cansat', 'CANSAT64G0356' => 'cansat', 'CANSAT78G2042' => 'cansat', 'CARHR125920' => 'chi', 'CARHR131910' => 'chi', 'CARHR172390' => 'chi', 'CARHR211140' => 'chi', 'CARHR285850' => 'chi', 'CARHR285860' => 'chi', 'Carub.0004s1347' => 'cru', 'Carub.0004s1960' => 'cru', 'Carub.0005s2880' => 'cru', 'Carub.0006s0107' => 'cru', 'Carub.0008s2015' => 'cru', 'Carub.0008s2016' => 'cru', 'Carub.0008s2017' => 'cru', 'Ca_01315_v3' => 'car', 'Ca_05063_v3' => 'car', 'Ca_10231_v3' => 'car', 'Ca_10913_v3' => 'car', 'Ca_19156_v3' => 'car', 'Ca_23644_v3' => 'car', 'Ca_26735_v3' => 'car', 'Cc01_g13130' => 'ccan', 'Cc02_g21690' => 'ccan', 'Cc03_g03600' => 'ccan', 'Cc06_g02510' => 'ccan', 'CDE02G1265' => 'cde', 'CDE05G0415' => 'cde', 'CDE08G1082' => 'cde', 'Cfa005780' => 'cfa', 'Cfa011522' => 'cfa', 'Cfa011523' => 'cfa', 'Cfa015627' => 'cfa', 'Cfa017359' => 'cfa', 'Ciclev10005687m.g' => 'ccl', 'Ciclev10012173m.g' => 'ccl', 'Ciclev10021621m.g' => 'ccl', 'Ciclev10028968m.g' => 'ccl', 'Ciclev10029907m.g' => 'ccl', 'CiPaw.01G164800' => 'cil', 'CiPaw.07G083700' => 'cil', 'CiPaw.07G127000' => 'cil', 'CiPaw.07G136900' => 'cil', 'CiPaw.08G081700' => 'cil', 'CiPaw.09G194600' => 'cil', 'CiPaw.10G146500' => 'cil', 'CiPaw.13G091500' => 'cil', 'CiPaw.13G091600' => 'cil', 'ClCG00G003390' => 'cla', 'ClCG01G007220' => 'cla', 'ClCG03G001370' => 'cla', 'ClCG04G008100' => 'cla', 'ClCG06G006110' => 'cla', 'ClCG06G006130' => 'cla', 'ClCG10G021210' => 'cla', 'COL.COLO4_07648' => 'col', 'COL.COLO4_07650' => 'col', 'COL.COLO4_07651' => 'col', 'COL.COLO4_14780' => 'col', 'COL.COLO4_18546' => 'col', 'COL.COLO4_18547' => 'col', 'COL.COLO4_23103' => 'col', 'COL.COLO4_30419' => 'col', 'COL.COLO4_34232' => 'col', 'Cpa.g.sc169.20' => 'cpa', 'Cpa.g.sc57.45' => 'cpa', 'Cpa.g.sc58.124' => 'cpa', 'Cpa.g.sc58.125' => 'cpa', 'Cpa.g.sc81.118' => 'cpa', 'Cpa.g.sc81.119' => 'cpa', 'Cre12.g524700' => 'cre', 'CsaV3_1G034430' => 'csa', 'CsaV3_1G034440' => 'csa', 'CsaV3_1G034450' => 'csa', 'CsaV3_3G034830' => 'csa', 'CsaV3_4G025090' => 'csa', 'CsaV3_5G018660' => 'csa', 'CsaV3_6G038160' => 'csa', 'CSS0003447' => 'camsi', 'CSS0017840' => 'camsi', 'CSS0019260' => 'camsi', 'CSS0040375' => 'camsi', 'CSS0042533' => 'camsi', 'DCAR_005960' => 'dca', 'DCAR_012104' => 'dca', 'DCAR_012105' => 'dca', 'DCAR_012293' => 'dca', 'DCAR_015632' => 'dca', 'DCAR_024602' => 'dca', 'DCAR_028752' => 'dca', 'Dinv06261' => 'din', 'Dinv13982' => 'din', 'Dinv17029' => 'din', 'Dinv18463' => 'din', 'Dinv33181' => 'din', 'Dinv35585' => 'din', 'Dinv37161' => 'din', 'Dinv42977' => 'din', 'Dinv43122' => 'din', 'Dinv44517' => 'din', 'Duzib093G0256' => 'dzi', 'Duzib106G1254' => 'dzi', 'Duzib128G1789' => 'dzi', 'Duzib133G0633' => 'dzi', 'Duzib138G0510' => 'dzi', 'Duzib150G1084' => 'dzi', 'Duzib168G0488' => 'dzi', 'Duzib168G1523' => 'dzi', 'Duzib170G0133' => 'dzi', 'ECA234G1433' => 'eca', 'ECA236G1432' => 'eca', 'ECA236G2256' => 'eca', 'ECA236G2365' => 'eca', 'ECA236G4830' => 'eca', 'ECA248G1505' => 'eca', 'EL10Ac3g06431' => 'bvu', 'EL10Ac5g12577' => 'bvu', 'EL10Ac6g13533' => 'bvu', 'EL10Ac7g16045' => 'bvu', 'Eucgr.A01281' => 'egr', 'Eucgr.B02326' => 'egr', 'Eucgr.H03532' => 'egr', 'Eucgr.K00553' => 'egr', 'Eucgr.K03116' => 'egr', 'FAN02G3963' => 'fan', 'FAN05G0438' => 'fan', 'FAN09G2434' => 'fan', 'FAN12G3984' => 'fan', 'FAN14G0798' => 'fan', 'FAN17G0652' => 'fan', 'FAN19G1988' => 'fan', 'FAN22G0632' => 'fan', 'FAN23G0387' => 'fan', 'FAN26G1323' => 'fan', 'FAN28G0666' => 'fan', 'FvH4_1g26080' => 'fve', 'FvH4_3g36780' => 'fve', 'FvH4_4g15270' => 'fve', 'FvH4_6g13490' => 'fve', 'Glyma.01G098700' => 'gma', 'Glyma.03G065900' => 'gma', 'Glyma.03G073754' => 'gma', 'Glyma.03G073758' => 'gma', 'Glyma.03G083200' => 'gma', 'Glyma.03G225500' => 'gma', 'Glyma.05G037766' => 'gma', 'Glyma.07G133500' => 'gma', 'Glyma.10G139400' => 'gma', 'Glyma.10G248900' => 'gma', 'Glyma.11G137800' => 'gma', 'Glyma.12G061300' => 'gma', 'Glyma.13G337900' => 'gma', 'Glyma.15G036600' => 'gma', 'Glyma.18G182800' => 'gma', 'Glyma.19G222500' => 'gma', 'Glyma.20G144800' => 'gma', 'Gohir.A01G222000' => 'ghi', 'Gohir.A03G044000' => 'ghi', 'Gohir.A03G044100' => 'ghi', 'Gohir.A04G083100' => 'ghi', 'Gohir.A07G127200' => 'ghi', 'Gohir.A07G132400' => 'ghi', 'Gohir.A08G000700' => 'ghi', 'Gohir.A11G327300' => 'ghi', 'Gohir.D01G211500' => 'ghi', 'Gohir.D03G123400' => 'ghi', 'Gohir.D03G123500' => 'ghi', 'Gohir.D04G121800' => 'ghi', 'Gohir.D07G131500' => 'ghi', 'Gohir.D07G136600' => 'ghi', 'Gohir.D08G011600' => 'ghi', 'Gohir.D11G346200' => 'ghi', 'Gorai.001G142800' => 'gra', 'Gorai.001G148700' => 'gra', 'Gorai.002G257300' => 'gra', 'Gorai.003G130000' => 'gra', 'Gorai.003G130100' => 'gra', 'Gorai.004G005300' => 'gra', 'Gorai.007G376500' => 'gra', 'Gorai.012G104700' => 'gra', 'GSVIVG01017946001' => 'vvi', 'GSVIVG01024928001' => 'vvi', 'GSVIVG01028227001' => 'vvi', 'GSVIVG01034151001' => 'vvi', 'HanXRQChr05g0135031' => 'han', 'HanXRQChr05g0135041' => 'han', 'HanXRQChr05g0140021' => 'han', 'HanXRQChr06g0178981' => 'han', 'HanXRQChr07g0188251' => 'han', 'HanXRQChr08g0235311' => 'han', 'HanXRQChr09g0271011' => 'han', 'HanXRQChr10g0293321' => 'han', 'HanXRQChr13g0388171' => 'han', 'Haze_00916' => 'cav', 'Haze_05063' => 'cav', 'Haze_20814' => 'cav', 'Haze_24128' => 'cav', 'Hma1.2p1_0745F.1_g212010' => 'hma', 'Hma1.2p1_0757F.1_g213260' => 'hma', 'Hma1.2p1_0936F.1_g238840' => 'hma', 'Hma1.2p1_1735F.1_g299890' => 'hma', 'Hma1.2p1_1861F.1_g305685' => 'hma', 'HPP92_003397' => 'vpl', 'HPP92_012597' => 'vpl', 'HPP92_015520' => 'vpl', 'HPP92_015539' => 'vpl', 'HPP92_020373' => 'vpl', 'Hund04938' => 'sun', 'Hund10677' => 'sun', 'Hund11033' => 'sun', 'Hund12155' => 'sun', 'Lalb_Chr01g0022551' => 'lal', 'Lalb_Chr03g0042341' => 'lal', 'Lalb_Chr07g0192931' => 'lal', 'Lalb_Chr12g0209551' => 'lal', 'Lalb_Chr19g0125251' => 'lal', 'Lalb_Chr19g0137891' => 'lal', 'Lalb_Chr21g0304641' => 'lal', 'Lalb_Chr21g0309881' => 'lal', 'Lj1A5T12' => 'lonja', 'Lj1C148G10' => 'lonja', 'Lj2A93T83' => 'lonja', 'Lj3A738G68' => 'lonja', 'Lj3C966T1' => 'lonja', 'Lj3g0018958' => 'lja', 'Lj3g0021831' => 'lja', 'Lj3g0025443' => 'lja', 'Lj4g0026809' => 'lja', 'Lj5g0012558' => 'lja', 'Lj5g0021586' => 'lja', 'Lsat_1_v5_gn_5_156840' => 'lsa', 'Lsat_1_v5_gn_8_73460' => 'lsa', 'Lsat_1_v5_gn_8_73481' => 'lsa', 'Lsat_1_v5_gn_9_31601' => 'lsa', 'Lsat_1_v5_gn_9_77320' => 'lsa', 'Manes.01G171300' => 'mes', 'Manes.01G171400' => 'mes', 'Manes.01G236100' => 'mes', 'Manes.02G130500' => 'mes', 'Manes.02G130600' => 'mes', 'Manes.03G180200' => 'mes', 'Manes.05G007000' => 'mes', 'Manes.08G084400' => 'mes', 'Manes.09G092600' => 'mes', 'Manes.15G027900' => 'mes', 'MBI04_g40948_MAGBIO' => 'mbi', 'MBI14_g12123_MAGBIO' => 'mbi', 'MBI18_g28915_MAGBIO' => 'mbi', 'MCO09G053' => 'mco', 'MCO11G782' => 'mco', 'MCO15G215' => 'mco', 'MD03G1088500' => 'mdo', 'MD03G1088600' => 'mdo', 'MD04G1130800' => 'mdo', 'MD09G1291700' => 'mdo', 'MD11G1097500' => 'mdo', 'MD11G1097600' => 'mdo', 'MD12G1143900' => 'mdo', 'MD13G1191400' => 'mdo', 'MD16G1191500' => 'mdo', 'Medtr1g085570' => 'mtr', 'Medtr1g104610' => 'mtr', 'Medtr2g097520' => 'mtr', 'Medtr4g021800' => 'mtr', 'Medtr4g021825' => 'mtr', 'Medtr4g064270' => 'mtr', 'Medtr4g064380' => 'mtr', 'Medtr7g062150' => 'mtr', 'MELO3C003138.2' => 'cme', 'MELO3C005187.2' => 'cme', 'MELO3C009252.2' => 'cme', 'MELO3C014481.2' => 'cme', 'MELO3C020616.2' => 'cme', 'MELO3C020617.2' => 'cme', 'MELO3C020618.2' => 'cme', 'Migut.G00328' => 'egut', 'Migut.J00320' => 'egut', 'Migut.L01000' => 'egut', 'Migut.L01953' => 'egut', 'MSTRG.10253' => 'ama', 'MSTRG.19077' => 'ama', 'MSTRG.26780' => 'ama', 'MSTRG.4023' => 'ama', 'MSTRG.5655' => 'ama', 'MSTRG.9992' => 'ama', 'Nitab4.5_0000043g0310' => 'nta', 'Nitab4.5_0000463g0080' => 'nta', 'Nitab4.5_0000705g0170' => 'nta', 'Nitab4.5_0001326g0060' => 'nta', 'Nitab4.5_0001628g0030' => 'nta', 'Nitab4.5_0002103g0110' => 'nta', 'Nitab4.5_0002946g0030' => 'nta', 'Nitab4.5_0004639g0030' => 'nta', 'Nn2g11149' => 'nnu', 'Nn2g13389' => 'nnu', 'Nn4g25326' => 'nnu', 'Nn4g26290' => 'nnu', 'Nn5g29865' => 'nnu', 'Oeu004163.1' => 'oeu', 'Oeu006901.1' => 'oeu', 'Oeu010096.1' => 'oeu', 'Oeu024340.1' => 'oeu', 'Oeu048369.1' => 'oeu', 'Os01g0973000' => 'osa', 'Os03g0273800' => 'osa', 'Os03g0701200' => 'osa', 'Os03g0834050' => 'osa', 'Os07g0634400' => 'osa', 'Peaxi162Scf00092g01414' => 'pax', 'Peaxi162Scf00165g00818' => 'pax', 'Peaxi162Scf00309g00516' => 'pax', 'Peaxi162Scf00774g00218' => 'pax', 'PGR004G1824' => 'pgr', 'PGR004G2606' => 'pgr', 'PGR031G2716' => 'pgr', 'PGR102G2460' => 'pgr', 'PGR142G2599' => 'pgr', 'PGSC0003DMG400000843' => 'stu', 'PGSC0003DMG400008829' => 'stu', 'PGSC0003DMG400030418' => 'stu', 'PGSC0003DMG400031834' => 'stu', 'PGSC0003DMG401028300' => 'stu', 'PGSC0003DMG402028300' => 'stu', 'Phvul.001G219300' => 'pvu', 'Phvul.007G056000' => 'pvu', 'Phvul.007G208000' => 'pvu', 'Phvul.008G119500' => 'pvu', 'Phvul.010G011200' => 'pvu', 'Phvul.010G014800' => 'pvu', 'Phvul.011G062900' => 'pvu', 'Phvul.L007043' => 'pvu', 'Potri.001G242300' => 'ptr', 'Potri.002G185300' => 'ptr', 'Potri.006G086900' => 'ptr', 'Potri.008G151700' => 'ptr', 'Potri.009G033500' => 'ptr', 'Potri.010G089300' => 'ptr', 'Potri.014G110800' => 'ptr', 'Pp3c27_8130' => 'ppa', 'Pp3c6_27410' => 'ppa', 'PRCOL_00001659' => 'pco', 'PRCOL_00001927' => 'pco', 'PRCOL_00003649' => 'pco', 'Prupe.1G011600' => 'ppe', 'Prupe.3G000800' => 'ppe', 'Prupe.3G001100' => 'ppe', 'Prupe.6G072700' => 'ppe', 'Prupe.6G072800' => 'ppe', 'Prupe.6G257300' => 'ppe', 'Prupe.8G033000' => 'ppe', 'Psat0s2633g0080' => 'psa', 'Psat0s3396g0080' => 'psa', 'Psat0s3396g0200' => 'psa', 'Psat3g139080' => 'psa', 'Psat5g285080' => 'psa', 'Psat6g157760' => 'psa', 'Psat6g208440' => 'psa', 'Psat7g215320' => 'psa', 'Psat7g215400' => 'psa', 'Psat7g235600' => 'psa', 'Psat7g235760' => 'psa', 'PSO063G4603' => 'pso', 'PSO210G0182' => 'pso', 'PSO210G0196' => 'pso', 'PSO339G0394' => 'pso', 'PSO339G4127' => 'pso', 'PSO513G0064' => 'pso', 'PSO761G0079' => 'pso', 'QL01p031003' => 'qlo', 'QL01p031078' => 'qlo', 'QL06p003004' => 'qlo', 'QL07p048731' => 'qlo', 'QL09p037427' => 'qlo', 'RcHm_v2.0_Chr3g0466361' => 'rch', 'RcHm_v2.0_Chr3g0485571' => 'rch', 'RcHm_v2.0_Chr4g0416551' => 'rch', 'RcHm_v2.0_Chr5g0065831' => 'rch', 'Rhsim01G0230500' => 'rsi', 'Rhsim05G0194000' => 'rsi', 'Rhsim08G0250400' => 'rsi', 'Sabra02G0131000' => 'sbr', 'Sabra06G0066300' => 'sbr', 'Sabra08G0115500' => 'sbr', 'Sabra09G0023900' => 'sbr', 'Sabra10G0054000' => 'sbr', 'Sabra14G0081500' => 'sbr', 'Sabra16G0147100' => 'sbr', 'SalBow2G2957' => 'sbo', 'SalBow4G3320' => 'sbo', 'SalBow8G1894' => 'sbo', 'Sc07g0007950' => 'sci', 'Sc12g0001360' => 'sci', 'Sc13g0004330' => 'sci', 'Sc20g0005010' => 'sci', 'Sed0000361' => 'sed', 'Sed0001706' => 'sed', 'Sed0002422' => 'sed', 'Sed0004029' => 'sed', 'Sed0004602' => 'sed', 'Sed0004943' => 'sed', 'Sed0008646' => 'sed', 'Sed0023313' => 'sed', 'Sed0024843' => 'sed', 'SEGI_00081' => 'sgi', 'SEGI_00947' => 'sgi', 'SEGI_04046' => 'sgi', 'SEGI_06880' => 'sgi', 'SEGI_09736' => 'sgi', 'SEGI_12741' => 'sgi', 'SEGI_14530' => 'sgi', 'SEGI_20705' => 'sgi', 'SEGI_26088' => 'sgi', 'SEGI_28323' => 'sgi', 'SEGI_33343' => 'sgi', 'SGA_v2.0_scaffold126G33775' => 'sas', 'SGA_v2.0_scaffold2G01337' => 'sas', 'SGA_v2.0_scaffold38G15006' => 'sas', 'SGA_v2.0_scaffold39G15264' => 'sas', 'SGA_v2.0_scaffold453G51880' => 'sas', 'SHI12696' => 'shi', 'SMO367G1096' => 'smo', 'Solyc01g068630.3' => 'sly', 'Solyc05g011880.3' => 'sly', 'Solyc06g076300.3' => 'sly', 'Solyc09g010940.4' => 'sly', 'Solyc09g075890.3' => 'sly', 'Sopen01g030560' => 'spe', 'Sopen05g006630' => 'spe', 'Sopen06g032720' => 'spe', 'Sopen09g005660' => 'spe', 'Sopen09g030690' => 'spe', 'Sp4g14540' => 'spa', 'Sp4g20030' => 'spa', 'Sp5g01320' => 'spa', 'Sp6g21170' => 'spa', 'Sp6g21180' => 'spa', 'Sp6g21190' => 'spa', 'Sp6g40220' => 'spa', 'TAR362G0122' => 'tar', 'TAR362G1338' => 'tar', 'TAR369G0590' => 'tar', 'TAR371G0824' => 'tar', 'TAR622G1429' => 'tar', 'TAR623G0734' => 'tar', 'TAR625G0441' => 'tar', 'TAR629G0976' => 'tar', 'TAR633G1195' => 'tar', 'TAR636G2660' => 'tar', 'THA.LOC104799440' => 'tha', 'THA.LOC104800966' => 'tha', 'THA.LOC104806559' => 'tha', 'THA.LOC104810765' => 'tha', 'THA.LOC104816266' => 'tha', 'THA.LOC104817419' => 'tha', 'THA.LOC104827021' => 'tha', 'Thecc.01G327400' => 'tca', 'Thecc.04G229200' => 'tca', 'Thecc.05G037400' => 'tca', 'Thecc.09G318600' => 'tca', 'Thecc.09G318700' => 'tca', 'Thhalv10006238m.g' => 'esa', 'Thhalv10014321m.g' => 'esa', 'Thhalv10014335m.g' => 'esa', 'Thhalv10015826m.g' => 'esa', 'Thhalv10017107m.g' => 'esa', 'Thhalv10017180m.g' => 'esa', 'Thhalv10029339m.g' => 'esa', 'TPR.G1699' => 'tpr', 'TPR.G23609' => 'tpr', 'TPR.G3081' => 'tpr', 'TPR.G40397' => 'tpr', 'TPR.G5522' => 'tpr', 'TPR.G5618' => 'tpr', 'TPR.G5626' => 'tpr', 'TWI09G1632' => 'twi', 'TWI23G1230' => 'twi', 'TWI53G1064' => 'twi', 'TWI59G0751' => 'twi', 'TWI74G0947' => 'twi', 'TWI77G0337' => 'twi', 'TWI79G1254' => 'twi', 'unitig_0.g2341' => 'ugi', 'unitig_26.g10006' => 'ugi', 'unitig_26.g10008' => 'ugi', 'unitig_26.g9192' => 'ugi', 'vmacro14547' => 'vma', 'vmacro15333' => 'vma', 'vmacro18743' => 'vma', 'vmacro20166' => 'vma', 'VMungo0331G0523' => 'vmu', 'VMungo0331G1202' => 'vmu', 'VMungo0720G1228' => 'vmu', 'VMungo0720G1514' => 'vmu', 'VMungo1080G0169' => 'vmu', 'VMungo1127G1475' => 'vmu', 'VMungo1383G1208' => 'vmu', 'VMungo1383G1698' => 'vmu', 'Zm00001eb012270' => 'zma', 'Zm00001eb054100' => 'zma', 'Zm00001eb063350' => 'zma', 'Zm00001eb328560' => 'zma', 'Zm00001eb342820' => 'zma', 'Zm00001eb362210' => 'zma', 'Zm00001eb397730' => 'zma', 'Zm00001eb399750' => 'zma' ) $gf_id = 'HOM05D000959' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000959' ) $data_identifier = 'HOM05D000959' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 5, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 5, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 10, 'mbi' => (int) 3, 'mco' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 2, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 3, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 11, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399750' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000959', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '622', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p07100' => 'bna', 'A03p11720' => 'bna', 'A05p08300' => 'bna', 'A05p13380' => 'bna', 'A09p54130' => 'bna', 'A10p16690' => 'bna', 'A10p16700' => 'bna', 'A10p33390' => 'bna', 'Aa31LG10G16020' => 'aar', 'Aa31LG1G11810' => 'aar', 'Aa31LG1G11830' => 'aar', 'Aa31LG1G22510' => 'aar', 'Aa31LG5G4890' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5793' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2310' => 'aag', 'Actinidia08499' => 'ach', 'Actinidia11262' => 'ach', 'Actinidia23926' => 'ach', 'Actinidia34420' => 'ach', 'Actinidia36970' => 'ach', 'Ah.02g111220' => 'amhyb', 'Ah.15g097750' => 'amhyb', 'AL4G27500' => 'aly', 'AL6G11470' => 'aly', 'AL8G35950' => 'aly', 'AL8G35960' => 'aly', 'AL8G35970' => 'aly', 'Aqoxy1G00912' => 'aox', 'Aqoxy2G02253' => 'aox', 'Aqoxy2G02411' => 'aox', 'Aqoxy5G00485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BZ66YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K8ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM4FUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6BF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HFV7XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25JBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0YNNV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MAKK6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P70IT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP2Z6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V61LZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YWP64R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3S9AI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7PGHH' => 'arhy', 'AT2G32150' => 'ath', 'AT3G62040' => 'ath', 'AT5G02230' => 'ath', 'AT5G59480' => 'ath', 'AT5G59490' => 'ath', 'ATR0332G060' => 'atr', 'ATR0559G190' => 'atr', 'ATR0693G294' => 'atr', 'Atru.chr3.3975' => 'acertr', 'Atru.chr3.3976' => 'acertr', 'Atru.chr3.3977' => 'acertr', 'Atru.chr4.2498' => 'acertr', 'Atru.chr5.838' => 'acertr', 'Atru.chr8.1990' => 'acertr', 'Atru.chr8.1991' => 'acertr', 'Atru.chr8.1992' => 'acertr', 'AUR62001759' => 'cqu', 'AUR62009545' => 'cqu', 'AUR62010474' => 'cqu', 'AUR62025820' => 'cqu', 'AUR62030422' => 'cqu', 'AUR62033605' => 'cqu', 'AUR62038615' => 'cqu', 'AUR62041347' => 'cqu', 'BcaB01g04574' => 'bca', 'BcaB02g09263' => 'bca', 'BcaB02g10453' => 'bca', 'BcaB05g22513' => 'bca', 'BcaB08g36253' => 'bca', 'BcaB08g36254' => 'bca', 'BcaC01g06519' => 'bca', 'BcaC02g11889' => 'bca', 'BcaC03g14010' => 'bca', 'BcaC03g18439' => 'bca', 'BcaC04g19765' => 'bca', 'BcaC09g48432' => 'bca', 'BcaNung07302' => 'bca', 'BolC2t06040H' => 'bol', 'BolC2t07346H' => 'bol', 'BolC3t13817H' => 'bol', 'BolC4t22625H' => 'bol', 'BolC4t23297H' => 'bol', 'BolC8t51278H' => 'bol', 'BolC9t58050H' => 'bol', 'BolC9t58051H' => 'bol', 'BolC9t60163H' => 'bol', 'BraA02t04712Z' => 'bra', 'BraA02t05791Z' => 'bra', 'BraA03t10483Z' => 'bra', 'BraA05t19795Z' => 'bra', 'BraA05t20276Z' => 'bra', 'BraA09t40827Z' => 'bra', 'BraA10t43750Z' => 'bra', 'BraA10t43751Z' => 'bra', 'BraA10t45370Z' => 'bra', 'C02p00400' => 'bna', 'C02p12460' => 'bna', 'C03p13680' => 'bna', 'C04p10270' => 'bna', 'C04p17500' => 'bna', 'C08p37010' => 'bna', 'C09p51880' => 'bna', 'C09p51890' => 'bna', 'C09p74300' => 'bna', 'CAN.G179.26' => 'can', 'CAN.G3384.1' => 'can', 'CAN.G394.68' => 'can', 'CAN.G907.13' => 'can', 'CANSAT11G0012' => 'cansat', 'CANSAT25G1586' => 'cansat', 'CANSAT35G0735' => 'cansat', 'CANSAT54G0556' => 'cansat', 'CANSAT64G0356' => 'cansat', 'CANSAT78G2042' => 'cansat', 'CARHR125920' => 'chi', 'CARHR131910' => 'chi', 'CARHR172390' => 'chi', 'CARHR211140' => 'chi', 'CARHR285850' => 'chi', 'CARHR285860' => 'chi', 'Carub.0004s1347' => 'cru', 'Carub.0004s1960' => 'cru', 'Carub.0005s2880' => 'cru', 'Carub.0006s0107' => 'cru', 'Carub.0008s2015' => 'cru', 'Carub.0008s2016' => 'cru', 'Carub.0008s2017' => 'cru', 'Ca_01315_v3' => 'car', 'Ca_05063_v3' => 'car', 'Ca_10231_v3' => 'car', 'Ca_10913_v3' => 'car', 'Ca_19156_v3' => 'car', 'Ca_23644_v3' => 'car', 'Ca_26735_v3' => 'car', 'Cc01_g13130' => 'ccan', 'Cc02_g21690' => 'ccan', 'Cc03_g03600' => 'ccan', 'Cc06_g02510' => 'ccan', 'CDE02G1265' => 'cde', 'CDE05G0415' => 'cde', 'CDE08G1082' => 'cde', 'Cfa005780' => 'cfa', 'Cfa011522' => 'cfa', 'Cfa011523' => 'cfa', 'Cfa015627' => 'cfa', 'Cfa017359' => 'cfa', 'Ciclev10005687m.g' => 'ccl', 'Ciclev10012173m.g' => 'ccl', 'Ciclev10021621m.g' => 'ccl', 'Ciclev10028968m.g' => 'ccl', 'Ciclev10029907m.g' => 'ccl', 'CiPaw.01G164800' => 'cil', 'CiPaw.07G083700' => 'cil', 'CiPaw.07G127000' => 'cil', 'CiPaw.07G136900' => 'cil', 'CiPaw.08G081700' => 'cil', 'CiPaw.09G194600' => 'cil', 'CiPaw.10G146500' => 'cil', 'CiPaw.13G091500' => 'cil', 'CiPaw.13G091600' => 'cil', 'ClCG00G003390' => 'cla', 'ClCG01G007220' => 'cla', 'ClCG03G001370' => 'cla', 'ClCG04G008100' => 'cla', 'ClCG06G006110' => 'cla', 'ClCG06G006130' => 'cla', 'ClCG10G021210' => 'cla', 'COL.COLO4_07648' => 'col', 'COL.COLO4_07650' => 'col', 'COL.COLO4_07651' => 'col', 'COL.COLO4_14780' => 'col', 'COL.COLO4_18546' => 'col', 'COL.COLO4_18547' => 'col', 'COL.COLO4_23103' => 'col', 'COL.COLO4_30419' => 'col', 'COL.COLO4_34232' => 'col', 'Cpa.g.sc169.20' => 'cpa', 'Cpa.g.sc57.45' => 'cpa', 'Cpa.g.sc58.124' => 'cpa', 'Cpa.g.sc58.125' => 'cpa', 'Cpa.g.sc81.118' => 'cpa', 'Cpa.g.sc81.119' => 'cpa', 'Cre12.g524700' => 'cre', 'CsaV3_1G034430' => 'csa', 'CsaV3_1G034440' => 'csa', 'CsaV3_1G034450' => 'csa', 'CsaV3_3G034830' => 'csa', 'CsaV3_4G025090' => 'csa', 'CsaV3_5G018660' => 'csa', 'CsaV3_6G038160' => 'csa', 'CSS0003447' => 'camsi', 'CSS0017840' => 'camsi', 'CSS0019260' => 'camsi', 'CSS0040375' => 'camsi', 'CSS0042533' => 'camsi', 'DCAR_005960' => 'dca', 'DCAR_012104' => 'dca', 'DCAR_012105' => 'dca', 'DCAR_012293' => 'dca', 'DCAR_015632' => 'dca', 'DCAR_024602' => 'dca', 'DCAR_028752' => 'dca', 'Dinv06261' => 'din', 'Dinv13982' => 'din', 'Dinv17029' => 'din', 'Dinv18463' => 'din', 'Dinv33181' => 'din', 'Dinv35585' => 'din', 'Dinv37161' => 'din', 'Dinv42977' => 'din', 'Dinv43122' => 'din', 'Dinv44517' => 'din', 'Duzib093G0256' => 'dzi', 'Duzib106G1254' => 'dzi', 'Duzib128G1789' => 'dzi', 'Duzib133G0633' => 'dzi', 'Duzib138G0510' => 'dzi', 'Duzib150G1084' => 'dzi', 'Duzib168G0488' => 'dzi', 'Duzib168G1523' => 'dzi', 'Duzib170G0133' => 'dzi', 'ECA234G1433' => 'eca', 'ECA236G1432' => 'eca', 'ECA236G2256' => 'eca', 'ECA236G2365' => 'eca', 'ECA236G4830' => 'eca', 'ECA248G1505' => 'eca', 'EL10Ac3g06431' => 'bvu', 'EL10Ac5g12577' => 'bvu', 'EL10Ac6g13533' => 'bvu', 'EL10Ac7g16045' => 'bvu', 'Eucgr.A01281' => 'egr', 'Eucgr.B02326' => 'egr', 'Eucgr.H03532' => 'egr', 'Eucgr.K00553' => 'egr', 'Eucgr.K03116' => 'egr', 'FAN02G3963' => 'fan', 'FAN05G0438' => 'fan', 'FAN09G2434' => 'fan', 'FAN12G3984' => 'fan', 'FAN14G0798' => 'fan', 'FAN17G0652' => 'fan', 'FAN19G1988' => 'fan', 'FAN22G0632' => 'fan', 'FAN23G0387' => 'fan', 'FAN26G1323' => 'fan', 'FAN28G0666' => 'fan', 'FvH4_1g26080' => 'fve', 'FvH4_3g36780' => 'fve', 'FvH4_4g15270' => 'fve', 'FvH4_6g13490' => 'fve', 'Glyma.01G098700' => 'gma', 'Glyma.03G065900' => 'gma', 'Glyma.03G073754' => 'gma', 'Glyma.03G073758' => 'gma', 'Glyma.03G083200' => 'gma', 'Glyma.03G225500' => 'gma', 'Glyma.05G037766' => 'gma', 'Glyma.07G133500' => 'gma', 'Glyma.10G139400' => 'gma', 'Glyma.10G248900' => 'gma', 'Glyma.11G137800' => 'gma', 'Glyma.12G061300' => 'gma', 'Glyma.13G337900' => 'gma', 'Glyma.15G036600' => 'gma', 'Glyma.18G182800' => 'gma', 'Glyma.19G222500' => 'gma', 'Glyma.20G144800' => 'gma', 'Gohir.A01G222000' => 'ghi', 'Gohir.A03G044000' => 'ghi', 'Gohir.A03G044100' => 'ghi', 'Gohir.A04G083100' => 'ghi', 'Gohir.A07G127200' => 'ghi', 'Gohir.A07G132400' => 'ghi', 'Gohir.A08G000700' => 'ghi', 'Gohir.A11G327300' => 'ghi', 'Gohir.D01G211500' => 'ghi', 'Gohir.D03G123400' => 'ghi', 'Gohir.D03G123500' => 'ghi', 'Gohir.D04G121800' => 'ghi', 'Gohir.D07G131500' => 'ghi', 'Gohir.D07G136600' => 'ghi', 'Gohir.D08G011600' => 'ghi', 'Gohir.D11G346200' => 'ghi', 'Gorai.001G142800' => 'gra', 'Gorai.001G148700' => 'gra', 'Gorai.002G257300' => 'gra', 'Gorai.003G130000' => 'gra', 'Gorai.003G130100' => 'gra', 'Gorai.004G005300' => 'gra', 'Gorai.007G376500' => 'gra', 'Gorai.012G104700' => 'gra', 'GSVIVG01017946001' => 'vvi', 'GSVIVG01024928001' => 'vvi', 'GSVIVG01028227001' => 'vvi', 'GSVIVG01034151001' => 'vvi', 'HanXRQChr05g0135031' => 'han', 'HanXRQChr05g0135041' => 'han', 'HanXRQChr05g0140021' => 'han', 'HanXRQChr06g0178981' => 'han', 'HanXRQChr07g0188251' => 'han', 'HanXRQChr08g0235311' => 'han', 'HanXRQChr09g0271011' => 'han', 'HanXRQChr10g0293321' => 'han', 'HanXRQChr13g0388171' => 'han', 'Haze_00916' => 'cav', 'Haze_05063' => 'cav', 'Haze_20814' => 'cav', 'Haze_24128' => 'cav', 'Hma1.2p1_0745F.1_g212010' => 'hma', 'Hma1.2p1_0757F.1_g213260' => 'hma', 'Hma1.2p1_0936F.1_g238840' => 'hma', 'Hma1.2p1_1735F.1_g299890' => 'hma', 'Hma1.2p1_1861F.1_g305685' => 'hma', 'HPP92_003397' => 'vpl', 'HPP92_012597' => 'vpl', 'HPP92_015520' => 'vpl', 'HPP92_015539' => 'vpl', 'HPP92_020373' => 'vpl', 'Hund04938' => 'sun', 'Hund10677' => 'sun', 'Hund11033' => 'sun', 'Hund12155' => 'sun', 'Lalb_Chr01g0022551' => 'lal', 'Lalb_Chr03g0042341' => 'lal', 'Lalb_Chr07g0192931' => 'lal', 'Lalb_Chr12g0209551' => 'lal', 'Lalb_Chr19g0125251' => 'lal', 'Lalb_Chr19g0137891' => 'lal', 'Lalb_Chr21g0304641' => 'lal', 'Lalb_Chr21g0309881' => 'lal', 'Lj1A5T12' => 'lonja', 'Lj1C148G10' => 'lonja', 'Lj2A93T83' => 'lonja', 'Lj3A738G68' => 'lonja', 'Lj3C966T1' => 'lonja', 'Lj3g0018958' => 'lja', 'Lj3g0021831' => 'lja', 'Lj3g0025443' => 'lja', 'Lj4g0026809' => 'lja', 'Lj5g0012558' => 'lja', 'Lj5g0021586' => 'lja', 'Lsat_1_v5_gn_5_156840' => 'lsa', 'Lsat_1_v5_gn_8_73460' => 'lsa', 'Lsat_1_v5_gn_8_73481' => 'lsa', 'Lsat_1_v5_gn_9_31601' => 'lsa', 'Lsat_1_v5_gn_9_77320' => 'lsa', 'Manes.01G171300' => 'mes', 'Manes.01G171400' => 'mes', 'Manes.01G236100' => 'mes', 'Manes.02G130500' => 'mes', 'Manes.02G130600' => 'mes', 'Manes.03G180200' => 'mes', 'Manes.05G007000' => 'mes', 'Manes.08G084400' => 'mes', 'Manes.09G092600' => 'mes', 'Manes.15G027900' => 'mes', 'MBI04_g40948_MAGBIO' => 'mbi', 'MBI14_g12123_MAGBIO' => 'mbi', 'MBI18_g28915_MAGBIO' => 'mbi', 'MCO09G053' => 'mco', 'MCO11G782' => 'mco', 'MCO15G215' => 'mco', 'MD03G1088500' => 'mdo', 'MD03G1088600' => 'mdo', 'MD04G1130800' => 'mdo', 'MD09G1291700' => 'mdo', 'MD11G1097500' => 'mdo', 'MD11G1097600' => 'mdo', 'MD12G1143900' => 'mdo', 'MD13G1191400' => 'mdo', 'MD16G1191500' => 'mdo', 'Medtr1g085570' => 'mtr', 'Medtr1g104610' => 'mtr', 'Medtr2g097520' => 'mtr', 'Medtr4g021800' => 'mtr', 'Medtr4g021825' => 'mtr', 'Medtr4g064270' => 'mtr', 'Medtr4g064380' => 'mtr', 'Medtr7g062150' => 'mtr', 'MELO3C003138.2' => 'cme', 'MELO3C005187.2' => 'cme', 'MELO3C009252.2' => 'cme', 'MELO3C014481.2' => 'cme', 'MELO3C020616.2' => 'cme', 'MELO3C020617.2' => 'cme', 'MELO3C020618.2' => 'cme', 'Migut.G00328' => 'egut', 'Migut.J00320' => 'egut', 'Migut.L01000' => 'egut', 'Migut.L01953' => 'egut', 'MSTRG.10253' => 'ama', 'MSTRG.19077' => 'ama', 'MSTRG.26780' => 'ama', 'MSTRG.4023' => 'ama', 'MSTRG.5655' => 'ama', 'MSTRG.9992' => 'ama', 'Nitab4.5_0000043g0310' => 'nta', 'Nitab4.5_0000463g0080' => 'nta', 'Nitab4.5_0000705g0170' => 'nta', 'Nitab4.5_0001326g0060' => 'nta', 'Nitab4.5_0001628g0030' => 'nta', 'Nitab4.5_0002103g0110' => 'nta', 'Nitab4.5_0002946g0030' => 'nta', 'Nitab4.5_0004639g0030' => 'nta', 'Nn2g11149' => 'nnu', 'Nn2g13389' => 'nnu', 'Nn4g25326' => 'nnu', 'Nn4g26290' => 'nnu', 'Nn5g29865' => 'nnu', 'Oeu004163.1' => 'oeu', 'Oeu006901.1' => 'oeu', 'Oeu010096.1' => 'oeu', 'Oeu024340.1' => 'oeu', 'Oeu048369.1' => 'oeu', 'Os01g0973000' => 'osa', 'Os03g0273800' => 'osa', 'Os03g0701200' => 'osa', 'Os03g0834050' => 'osa', 'Os07g0634400' => 'osa', 'Peaxi162Scf00092g01414' => 'pax', 'Peaxi162Scf00165g00818' => 'pax', 'Peaxi162Scf00309g00516' => 'pax', 'Peaxi162Scf00774g00218' => 'pax', 'PGR004G1824' => 'pgr', 'PGR004G2606' => 'pgr', 'PGR031G2716' => 'pgr', 'PGR102G2460' => 'pgr', 'PGR142G2599' => 'pgr', 'PGSC0003DMG400000843' => 'stu', 'PGSC0003DMG400008829' => 'stu', 'PGSC0003DMG400030418' => 'stu', 'PGSC0003DMG400031834' => 'stu', 'PGSC0003DMG401028300' => 'stu', 'PGSC0003DMG402028300' => 'stu', 'Phvul.001G219300' => 'pvu', 'Phvul.007G056000' => 'pvu', 'Phvul.007G208000' => 'pvu', 'Phvul.008G119500' => 'pvu', 'Phvul.010G011200' => 'pvu', 'Phvul.010G014800' => 'pvu', 'Phvul.011G062900' => 'pvu', 'Phvul.L007043' => 'pvu', 'Potri.001G242300' => 'ptr', 'Potri.002G185300' => 'ptr', 'Potri.006G086900' => 'ptr', 'Potri.008G151700' => 'ptr', 'Potri.009G033500' => 'ptr', 'Potri.010G089300' => 'ptr', 'Potri.014G110800' => 'ptr', 'Pp3c27_8130' => 'ppa', 'Pp3c6_27410' => 'ppa', 'PRCOL_00001659' => 'pco', 'PRCOL_00001927' => 'pco', 'PRCOL_00003649' => 'pco', 'Prupe.1G011600' => 'ppe', 'Prupe.3G000800' => 'ppe', 'Prupe.3G001100' => 'ppe', 'Prupe.6G072700' => 'ppe', 'Prupe.6G072800' => 'ppe', 'Prupe.6G257300' => 'ppe', 'Prupe.8G033000' => 'ppe', 'Psat0s2633g0080' => 'psa', 'Psat0s3396g0080' => 'psa', 'Psat0s3396g0200' => 'psa', 'Psat3g139080' => 'psa', 'Psat5g285080' => 'psa', 'Psat6g157760' => 'psa', 'Psat6g208440' => 'psa', 'Psat7g215320' => 'psa', 'Psat7g215400' => 'psa', 'Psat7g235600' => 'psa', 'Psat7g235760' => 'psa', 'PSO063G4603' => 'pso', 'PSO210G0182' => 'pso', 'PSO210G0196' => 'pso', 'PSO339G0394' => 'pso', 'PSO339G4127' => 'pso', 'PSO513G0064' => 'pso', 'PSO761G0079' => 'pso', 'QL01p031003' => 'qlo', 'QL01p031078' => 'qlo', 'QL06p003004' => 'qlo', 'QL07p048731' => 'qlo', 'QL09p037427' => 'qlo', 'RcHm_v2.0_Chr3g0466361' => 'rch', 'RcHm_v2.0_Chr3g0485571' => 'rch', 'RcHm_v2.0_Chr4g0416551' => 'rch', 'RcHm_v2.0_Chr5g0065831' => 'rch', 'Rhsim01G0230500' => 'rsi', 'Rhsim05G0194000' => 'rsi', 'Rhsim08G0250400' => 'rsi', 'Sabra02G0131000' => 'sbr', 'Sabra06G0066300' => 'sbr', 'Sabra08G0115500' => 'sbr', 'Sabra09G0023900' => 'sbr', 'Sabra10G0054000' => 'sbr', 'Sabra14G0081500' => 'sbr', 'Sabra16G0147100' => 'sbr', 'SalBow2G2957' => 'sbo', 'SalBow4G3320' => 'sbo', 'SalBow8G1894' => 'sbo', 'Sc07g0007950' => 'sci', 'Sc12g0001360' => 'sci', 'Sc13g0004330' => 'sci', 'Sc20g0005010' => 'sci', 'Sed0000361' => 'sed', 'Sed0001706' => 'sed', 'Sed0002422' => 'sed', 'Sed0004029' => 'sed', 'Sed0004602' => 'sed', 'Sed0004943' => 'sed', 'Sed0008646' => 'sed', 'Sed0023313' => 'sed', 'Sed0024843' => 'sed', 'SEGI_00081' => 'sgi', 'SEGI_00947' => 'sgi', 'SEGI_04046' => 'sgi', 'SEGI_06880' => 'sgi', 'SEGI_09736' => 'sgi', 'SEGI_12741' => 'sgi', 'SEGI_14530' => 'sgi', 'SEGI_20705' => 'sgi', 'SEGI_26088' => 'sgi', 'SEGI_28323' => 'sgi', 'SEGI_33343' => 'sgi', 'SGA_v2.0_scaffold126G33775' => 'sas', 'SGA_v2.0_scaffold2G01337' => 'sas', 'SGA_v2.0_scaffold38G15006' => 'sas', 'SGA_v2.0_scaffold39G15264' => 'sas', 'SGA_v2.0_scaffold453G51880' => 'sas', 'SHI12696' => 'shi', 'SMO367G1096' => 'smo', 'Solyc01g068630.3' => 'sly', 'Solyc05g011880.3' => 'sly', 'Solyc06g076300.3' => 'sly', 'Solyc09g010940.4' => 'sly', 'Solyc09g075890.3' => 'sly', 'Sopen01g030560' => 'spe', 'Sopen05g006630' => 'spe', 'Sopen06g032720' => 'spe', 'Sopen09g005660' => 'spe', 'Sopen09g030690' => 'spe', 'Sp4g14540' => 'spa', 'Sp4g20030' => 'spa', 'Sp5g01320' => 'spa', 'Sp6g21170' => 'spa', 'Sp6g21180' => 'spa', 'Sp6g21190' => 'spa', 'Sp6g40220' => 'spa', 'TAR362G0122' => 'tar', 'TAR362G1338' => 'tar', 'TAR369G0590' => 'tar', 'TAR371G0824' => 'tar', 'TAR622G1429' => 'tar', 'TAR623G0734' => 'tar', 'TAR625G0441' => 'tar', 'TAR629G0976' => 'tar', 'TAR633G1195' => 'tar', 'TAR636G2660' => 'tar', 'THA.LOC104799440' => 'tha', 'THA.LOC104800966' => 'tha', 'THA.LOC104806559' => 'tha', 'THA.LOC104810765' => 'tha', 'THA.LOC104816266' => 'tha', 'THA.LOC104817419' => 'tha', 'THA.LOC104827021' => 'tha', 'Thecc.01G327400' => 'tca', 'Thecc.04G229200' => 'tca', 'Thecc.05G037400' => 'tca', 'Thecc.09G318600' => 'tca', 'Thecc.09G318700' => 'tca', 'Thhalv10006238m.g' => 'esa', 'Thhalv10014321m.g' => 'esa', 'Thhalv10014335m.g' => 'esa', 'Thhalv10015826m.g' => 'esa', 'Thhalv10017107m.g' => 'esa', 'Thhalv10017180m.g' => 'esa', 'Thhalv10029339m.g' => 'esa', 'TPR.G1699' => 'tpr', 'TPR.G23609' => 'tpr', 'TPR.G3081' => 'tpr', 'TPR.G40397' => 'tpr', 'TPR.G5522' => 'tpr', 'TPR.G5618' => 'tpr', 'TPR.G5626' => 'tpr', 'TWI09G1632' => 'twi', 'TWI23G1230' => 'twi', 'TWI53G1064' => 'twi', 'TWI59G0751' => 'twi', 'TWI74G0947' => 'twi', 'TWI77G0337' => 'twi', 'TWI79G1254' => 'twi', 'unitig_0.g2341' => 'ugi', 'unitig_26.g10006' => 'ugi', 'unitig_26.g10008' => 'ugi', 'unitig_26.g9192' => 'ugi', 'vmacro14547' => 'vma', 'vmacro15333' => 'vma', 'vmacro18743' => 'vma', 'vmacro20166' => 'vma', 'VMungo0331G0523' => 'vmu', 'VMungo0331G1202' => 'vmu', 'VMungo0720G1228' => 'vmu', 'VMungo0720G1514' => 'vmu', 'VMungo1080G0169' => 'vmu', 'VMungo1127G1475' => 'vmu', 'VMungo1383G1208' => 'vmu', 'VMungo1383G1698' => 'vmu', 'Zm00001eb012270' => 'zma', 'Zm00001eb054100' => 'zma', 'Zm00001eb063350' => 'zma', 'Zm00001eb328560' => 'zma', 'Zm00001eb342820' => 'zma', 'Zm00001eb362210' => 'zma', 'Zm00001eb397730' => 'zma', 'Zm00001eb399750' => 'zma' ), 'gf_id' => 'HOM05D000959', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000959' ), 'data_identifier' => 'HOM05D000959', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000959', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '622', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p07100' => 'bna', 'A03p11720' => 'bna', 'A05p08300' => 'bna', 'A05p13380' => 'bna', 'A09p54130' => 'bna', 'A10p16690' => 'bna', 'A10p16700' => 'bna', 'A10p33390' => 'bna', 'Aa31LG10G16020' => 'aar', 'Aa31LG1G11810' => 'aar', 'Aa31LG1G11830' => 'aar', 'Aa31LG1G22510' => 'aar', 'Aa31LG5G4890' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5793' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2310' => 'aag', 'Actinidia08499' => 'ach', 'Actinidia11262' => 'ach', 'Actinidia23926' => 'ach', 'Actinidia34420' => 'ach', 'Actinidia36970' => 'ach', 'Ah.02g111220' => 'amhyb', 'Ah.15g097750' => 'amhyb', 'AL4G27500' => 'aly', 'AL6G11470' => 'aly', 'AL8G35950' => 'aly', 'AL8G35960' => 'aly', 'AL8G35970' => 'aly', 'Aqoxy1G00912' => 'aox', 'Aqoxy2G02253' => 'aox', 'Aqoxy2G02411' => 'aox', 'Aqoxy5G00485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BZ66YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K8ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM4FUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6BF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HFV7XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25JBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0YNNV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MAKK6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P70IT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP2Z6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V61LZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YWP64R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3S9AI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7PGHH' => 'arhy', 'AT2G32150' => 'ath', 'AT3G62040' => 'ath', 'AT5G02230' => 'ath', 'AT5G59480' => 'ath', 'AT5G59490' => 'ath', 'ATR0332G060' => 'atr', 'ATR0559G190' => 'atr', 'ATR0693G294' => 'atr', 'Atru.chr3.3975' => 'acertr', 'Atru.chr3.3976' => 'acertr', 'Atru.chr3.3977' => 'acertr', 'Atru.chr4.2498' => 'acertr', 'Atru.chr5.838' => 'acertr', 'Atru.chr8.1990' => 'acertr', 'Atru.chr8.1991' => 'acertr', 'Atru.chr8.1992' => 'acertr', 'AUR62001759' => 'cqu', 'AUR62009545' => 'cqu', 'AUR62010474' => 'cqu', 'AUR62025820' => 'cqu', 'AUR62030422' => 'cqu', 'AUR62033605' => 'cqu', 'AUR62038615' => 'cqu', 'AUR62041347' => 'cqu', 'BcaB01g04574' => 'bca', 'BcaB02g09263' => 'bca', 'BcaB02g10453' => 'bca', 'BcaB05g22513' => 'bca', 'BcaB08g36253' => 'bca', 'BcaB08g36254' => 'bca', 'BcaC01g06519' => 'bca', 'BcaC02g11889' => 'bca', 'BcaC03g14010' => 'bca', 'BcaC03g18439' => 'bca', 'BcaC04g19765' => 'bca', 'BcaC09g48432' => 'bca', 'BcaNung07302' => 'bca', 'BolC2t06040H' => 'bol', 'BolC2t07346H' => 'bol', 'BolC3t13817H' => 'bol', 'BolC4t22625H' => 'bol', 'BolC4t23297H' => 'bol', 'BolC8t51278H' => 'bol', 'BolC9t58050H' => 'bol', 'BolC9t58051H' => 'bol', 'BolC9t60163H' => 'bol', 'BraA02t04712Z' => 'bra', 'BraA02t05791Z' => 'bra', 'BraA03t10483Z' => 'bra', 'BraA05t19795Z' => 'bra', 'BraA05t20276Z' => 'bra', 'BraA09t40827Z' => 'bra', 'BraA10t43750Z' => 'bra', 'BraA10t43751Z' => 'bra', 'BraA10t45370Z' => 'bra', 'C02p00400' => 'bna', 'C02p12460' => 'bna', 'C03p13680' => 'bna', 'C04p10270' => 'bna', 'C04p17500' => 'bna', 'C08p37010' => 'bna', 'C09p51880' => 'bna', 'C09p51890' => 'bna', 'C09p74300' => 'bna', 'CAN.G179.26' => 'can', 'CAN.G3384.1' => 'can', 'CAN.G394.68' => 'can', 'CAN.G907.13' => 'can', 'CANSAT11G0012' => 'cansat', 'CANSAT25G1586' => 'cansat', 'CANSAT35G0735' => 'cansat', 'CANSAT54G0556' => 'cansat', 'CANSAT64G0356' => 'cansat', 'CANSAT78G2042' => 'cansat', 'CARHR125920' => 'chi', 'CARHR131910' => 'chi', 'CARHR172390' => 'chi', 'CARHR211140' => 'chi', 'CARHR285850' => 'chi', 'CARHR285860' => 'chi', 'Carub.0004s1347' => 'cru', 'Carub.0004s1960' => 'cru', 'Carub.0005s2880' => 'cru', 'Carub.0006s0107' => 'cru', 'Carub.0008s2015' => 'cru', 'Carub.0008s2016' => 'cru', 'Carub.0008s2017' => 'cru', 'Ca_01315_v3' => 'car', 'Ca_05063_v3' => 'car', 'Ca_10231_v3' => 'car', 'Ca_10913_v3' => 'car', 'Ca_19156_v3' => 'car', 'Ca_23644_v3' => 'car', 'Ca_26735_v3' => 'car', 'Cc01_g13130' => 'ccan', 'Cc02_g21690' => 'ccan', 'Cc03_g03600' => 'ccan', 'Cc06_g02510' => 'ccan', 'CDE02G1265' => 'cde', 'CDE05G0415' => 'cde', 'CDE08G1082' => 'cde', 'Cfa005780' => 'cfa', 'Cfa011522' => 'cfa', 'Cfa011523' => 'cfa', 'Cfa015627' => 'cfa', 'Cfa017359' => 'cfa', 'Ciclev10005687m.g' => 'ccl', 'Ciclev10012173m.g' => 'ccl', 'Ciclev10021621m.g' => 'ccl', 'Ciclev10028968m.g' => 'ccl', 'Ciclev10029907m.g' => 'ccl', 'CiPaw.01G164800' => 'cil', 'CiPaw.07G083700' => 'cil', 'CiPaw.07G127000' => 'cil', 'CiPaw.07G136900' => 'cil', 'CiPaw.08G081700' => 'cil', 'CiPaw.09G194600' => 'cil', 'CiPaw.10G146500' => 'cil', 'CiPaw.13G091500' => 'cil', 'CiPaw.13G091600' => 'cil', 'ClCG00G003390' => 'cla', 'ClCG01G007220' => 'cla', 'ClCG03G001370' => 'cla', 'ClCG04G008100' => 'cla', 'ClCG06G006110' => 'cla', 'ClCG06G006130' => 'cla', 'ClCG10G021210' => 'cla', 'COL.COLO4_07648' => 'col', 'COL.COLO4_07650' => 'col', 'COL.COLO4_07651' => 'col', 'COL.COLO4_14780' => 'col', 'COL.COLO4_18546' => 'col', 'COL.COLO4_18547' => 'col', 'COL.COLO4_23103' => 'col', 'COL.COLO4_30419' => 'col', 'COL.COLO4_34232' => 'col', 'Cpa.g.sc169.20' => 'cpa', 'Cpa.g.sc57.45' => 'cpa', 'Cpa.g.sc58.124' => 'cpa', 'Cpa.g.sc58.125' => 'cpa', 'Cpa.g.sc81.118' => 'cpa', 'Cpa.g.sc81.119' => 'cpa', 'Cre12.g524700' => 'cre', 'CsaV3_1G034430' => 'csa', 'CsaV3_1G034440' => 'csa', 'CsaV3_1G034450' => 'csa', 'CsaV3_3G034830' => 'csa', 'CsaV3_4G025090' => 'csa', 'CsaV3_5G018660' => 'csa', 'CsaV3_6G038160' => 'csa', 'CSS0003447' => 'camsi', 'CSS0017840' => 'camsi', 'CSS0019260' => 'camsi', 'CSS0040375' => 'camsi', 'CSS0042533' => 'camsi', 'DCAR_005960' => 'dca', 'DCAR_012104' => 'dca', 'DCAR_012105' => 'dca', 'DCAR_012293' => 'dca', 'DCAR_015632' => 'dca', 'DCAR_024602' => 'dca', 'DCAR_028752' => 'dca', 'Dinv06261' => 'din', 'Dinv13982' => 'din', 'Dinv17029' => 'din', 'Dinv18463' => 'din', 'Dinv33181' => 'din', 'Dinv35585' => 'din', 'Dinv37161' => 'din', 'Dinv42977' => 'din', 'Dinv43122' => 'din', 'Dinv44517' => 'din', 'Duzib093G0256' => 'dzi', 'Duzib106G1254' => 'dzi', 'Duzib128G1789' => 'dzi', 'Duzib133G0633' => 'dzi', 'Duzib138G0510' => 'dzi', 'Duzib150G1084' => 'dzi', 'Duzib168G0488' => 'dzi', 'Duzib168G1523' => 'dzi', 'Duzib170G0133' => 'dzi', 'ECA234G1433' => 'eca', 'ECA236G1432' => 'eca', 'ECA236G2256' => 'eca', 'ECA236G2365' => 'eca', 'ECA236G4830' => 'eca', 'ECA248G1505' => 'eca', 'EL10Ac3g06431' => 'bvu', 'EL10Ac5g12577' => 'bvu', 'EL10Ac6g13533' => 'bvu', 'EL10Ac7g16045' => 'bvu', 'Eucgr.A01281' => 'egr', 'Eucgr.B02326' => 'egr', 'Eucgr.H03532' => 'egr', 'Eucgr.K00553' => 'egr', 'Eucgr.K03116' => 'egr', 'FAN02G3963' => 'fan', 'FAN05G0438' => 'fan', 'FAN09G2434' => 'fan', 'FAN12G3984' => 'fan', 'FAN14G0798' => 'fan', 'FAN17G0652' => 'fan', 'FAN19G1988' => 'fan', 'FAN22G0632' => 'fan', 'FAN23G0387' => 'fan', 'FAN26G1323' => 'fan', 'FAN28G0666' => 'fan', 'FvH4_1g26080' => 'fve', 'FvH4_3g36780' => 'fve', 'FvH4_4g15270' => 'fve', 'FvH4_6g13490' => 'fve', 'Glyma.01G098700' => 'gma', 'Glyma.03G065900' => 'gma', 'Glyma.03G073754' => 'gma', 'Glyma.03G073758' => 'gma', 'Glyma.03G083200' => 'gma', 'Glyma.03G225500' => 'gma', 'Glyma.05G037766' => 'gma', 'Glyma.07G133500' => 'gma', 'Glyma.10G139400' => 'gma', 'Glyma.10G248900' => 'gma', 'Glyma.11G137800' => 'gma', 'Glyma.12G061300' => 'gma', 'Glyma.13G337900' => 'gma', 'Glyma.15G036600' => 'gma', 'Glyma.18G182800' => 'gma', 'Glyma.19G222500' => 'gma', 'Glyma.20G144800' => 'gma', 'Gohir.A01G222000' => 'ghi', 'Gohir.A03G044000' => 'ghi', 'Gohir.A03G044100' => 'ghi', 'Gohir.A04G083100' => 'ghi', 'Gohir.A07G127200' => 'ghi', 'Gohir.A07G132400' => 'ghi', 'Gohir.A08G000700' => 'ghi', 'Gohir.A11G327300' => 'ghi', 'Gohir.D01G211500' => 'ghi', 'Gohir.D03G123400' => 'ghi', 'Gohir.D03G123500' => 'ghi', 'Gohir.D04G121800' => 'ghi', 'Gohir.D07G131500' => 'ghi', 'Gohir.D07G136600' => 'ghi', 'Gohir.D08G011600' => 'ghi', 'Gohir.D11G346200' => 'ghi', 'Gorai.001G142800' => 'gra', 'Gorai.001G148700' => 'gra', 'Gorai.002G257300' => 'gra', 'Gorai.003G130000' => 'gra', 'Gorai.003G130100' => 'gra', 'Gorai.004G005300' => 'gra', 'Gorai.007G376500' => 'gra', 'Gorai.012G104700' => 'gra', 'GSVIVG01017946001' => 'vvi', 'GSVIVG01024928001' => 'vvi', 'GSVIVG01028227001' => 'vvi', 'GSVIVG01034151001' => 'vvi', 'HanXRQChr05g0135031' => 'han', 'HanXRQChr05g0135041' => 'han', 'HanXRQChr05g0140021' => 'han', 'HanXRQChr06g0178981' => 'han', 'HanXRQChr07g0188251' => 'han', 'HanXRQChr08g0235311' => 'han', 'HanXRQChr09g0271011' => 'han', 'HanXRQChr10g0293321' => 'han', 'HanXRQChr13g0388171' => 'han', 'Haze_00916' => 'cav', 'Haze_05063' => 'cav', 'Haze_20814' => 'cav', 'Haze_24128' => 'cav', 'Hma1.2p1_0745F.1_g212010' => 'hma', 'Hma1.2p1_0757F.1_g213260' => 'hma', 'Hma1.2p1_0936F.1_g238840' => 'hma', 'Hma1.2p1_1735F.1_g299890' => 'hma', 'Hma1.2p1_1861F.1_g305685' => 'hma', 'HPP92_003397' => 'vpl', 'HPP92_012597' => 'vpl', 'HPP92_015520' => 'vpl', 'HPP92_015539' => 'vpl', 'HPP92_020373' => 'vpl', 'Hund04938' => 'sun', 'Hund10677' => 'sun', 'Hund11033' => 'sun', 'Hund12155' => 'sun', 'Lalb_Chr01g0022551' => 'lal', 'Lalb_Chr03g0042341' => 'lal', 'Lalb_Chr07g0192931' => 'lal', 'Lalb_Chr12g0209551' => 'lal', 'Lalb_Chr19g0125251' => 'lal', 'Lalb_Chr19g0137891' => 'lal', 'Lalb_Chr21g0304641' => 'lal', 'Lalb_Chr21g0309881' => 'lal', 'Lj1A5T12' => 'lonja', 'Lj1C148G10' => 'lonja', 'Lj2A93T83' => 'lonja', 'Lj3A738G68' => 'lonja', 'Lj3C966T1' => 'lonja', 'Lj3g0018958' => 'lja', 'Lj3g0021831' => 'lja', 'Lj3g0025443' => 'lja', 'Lj4g0026809' => 'lja', 'Lj5g0012558' => 'lja', 'Lj5g0021586' => 'lja', 'Lsat_1_v5_gn_5_156840' => 'lsa', 'Lsat_1_v5_gn_8_73460' => 'lsa', 'Lsat_1_v5_gn_8_73481' => 'lsa', 'Lsat_1_v5_gn_9_31601' => 'lsa', 'Lsat_1_v5_gn_9_77320' => 'lsa', 'Manes.01G171300' => 'mes', 'Manes.01G171400' => 'mes', 'Manes.01G236100' => 'mes', 'Manes.02G130500' => 'mes', 'Manes.02G130600' => 'mes', 'Manes.03G180200' => 'mes', 'Manes.05G007000' => 'mes', 'Manes.08G084400' => 'mes', 'Manes.09G092600' => 'mes', 'Manes.15G027900' => 'mes', 'MBI04_g40948_MAGBIO' => 'mbi', 'MBI14_g12123_MAGBIO' => 'mbi', 'MBI18_g28915_MAGBIO' => 'mbi', 'MCO09G053' => 'mco', 'MCO11G782' => 'mco', 'MCO15G215' => 'mco', 'MD03G1088500' => 'mdo', 'MD03G1088600' => 'mdo', 'MD04G1130800' => 'mdo', 'MD09G1291700' => 'mdo', 'MD11G1097500' => 'mdo', 'MD11G1097600' => 'mdo', 'MD12G1143900' => 'mdo', 'MD13G1191400' => 'mdo', 'MD16G1191500' => 'mdo', 'Medtr1g085570' => 'mtr', 'Medtr1g104610' => 'mtr', 'Medtr2g097520' => 'mtr', 'Medtr4g021800' => 'mtr', 'Medtr4g021825' => 'mtr', 'Medtr4g064270' => 'mtr', 'Medtr4g064380' => 'mtr', 'Medtr7g062150' => 'mtr', 'MELO3C003138.2' => 'cme', 'MELO3C005187.2' => 'cme', 'MELO3C009252.2' => 'cme', 'MELO3C014481.2' => 'cme', 'MELO3C020616.2' => 'cme', 'MELO3C020617.2' => 'cme', 'MELO3C020618.2' => 'cme', 'Migut.G00328' => 'egut', 'Migut.J00320' => 'egut', 'Migut.L01000' => 'egut', 'Migut.L01953' => 'egut', 'MSTRG.10253' => 'ama', 'MSTRG.19077' => 'ama', 'MSTRG.26780' => 'ama', 'MSTRG.4023' => 'ama', 'MSTRG.5655' => 'ama', 'MSTRG.9992' => 'ama', 'Nitab4.5_0000043g0310' => 'nta', 'Nitab4.5_0000463g0080' => 'nta', 'Nitab4.5_0000705g0170' => 'nta', 'Nitab4.5_0001326g0060' => 'nta', 'Nitab4.5_0001628g0030' => 'nta', 'Nitab4.5_0002103g0110' => 'nta', 'Nitab4.5_0002946g0030' => 'nta', 'Nitab4.5_0004639g0030' => 'nta', 'Nn2g11149' => 'nnu', 'Nn2g13389' => 'nnu', 'Nn4g25326' => 'nnu', 'Nn4g26290' => 'nnu', 'Nn5g29865' => 'nnu', 'Oeu004163.1' => 'oeu', 'Oeu006901.1' => 'oeu', 'Oeu010096.1' => 'oeu', 'Oeu024340.1' => 'oeu', 'Oeu048369.1' => 'oeu', 'Os01g0973000' => 'osa', 'Os03g0273800' => 'osa', 'Os03g0701200' => 'osa', 'Os03g0834050' => 'osa', 'Os07g0634400' => 'osa', 'Peaxi162Scf00092g01414' => 'pax', 'Peaxi162Scf00165g00818' => 'pax', 'Peaxi162Scf00309g00516' => 'pax', 'Peaxi162Scf00774g00218' => 'pax', 'PGR004G1824' => 'pgr', 'PGR004G2606' => 'pgr', 'PGR031G2716' => 'pgr', 'PGR102G2460' => 'pgr', 'PGR142G2599' => 'pgr', 'PGSC0003DMG400000843' => 'stu', 'PGSC0003DMG400008829' => 'stu', 'PGSC0003DMG400030418' => 'stu', 'PGSC0003DMG400031834' => 'stu', 'PGSC0003DMG401028300' => 'stu', 'PGSC0003DMG402028300' => 'stu', 'Phvul.001G219300' => 'pvu', 'Phvul.007G056000' => 'pvu', 'Phvul.007G208000' => 'pvu', 'Phvul.008G119500' => 'pvu', 'Phvul.010G011200' => 'pvu', 'Phvul.010G014800' => 'pvu', 'Phvul.011G062900' => 'pvu', 'Phvul.L007043' => 'pvu', 'Potri.001G242300' => 'ptr', 'Potri.002G185300' => 'ptr', 'Potri.006G086900' => 'ptr', 'Potri.008G151700' => 'ptr', 'Potri.009G033500' => 'ptr', 'Potri.010G089300' => 'ptr', 'Potri.014G110800' => 'ptr', 'Pp3c27_8130' => 'ppa', 'Pp3c6_27410' => 'ppa', 'PRCOL_00001659' => 'pco', 'PRCOL_00001927' => 'pco', 'PRCOL_00003649' => 'pco', 'Prupe.1G011600' => 'ppe', 'Prupe.3G000800' => 'ppe', 'Prupe.3G001100' => 'ppe', 'Prupe.6G072700' => 'ppe', 'Prupe.6G072800' => 'ppe', 'Prupe.6G257300' => 'ppe', 'Prupe.8G033000' => 'ppe', 'Psat0s2633g0080' => 'psa', 'Psat0s3396g0080' => 'psa', 'Psat0s3396g0200' => 'psa', 'Psat3g139080' => 'psa', 'Psat5g285080' => 'psa', 'Psat6g157760' => 'psa', 'Psat6g208440' => 'psa', 'Psat7g215320' => 'psa', 'Psat7g215400' => 'psa', 'Psat7g235600' => 'psa', 'Psat7g235760' => 'psa', 'PSO063G4603' => 'pso', 'PSO210G0182' => 'pso', 'PSO210G0196' => 'pso', 'PSO339G0394' => 'pso', 'PSO339G4127' => 'pso', 'PSO513G0064' => 'pso', 'PSO761G0079' => 'pso', 'QL01p031003' => 'qlo', 'QL01p031078' => 'qlo', 'QL06p003004' => 'qlo', 'QL07p048731' => 'qlo', 'QL09p037427' => 'qlo', 'RcHm_v2.0_Chr3g0466361' => 'rch', 'RcHm_v2.0_Chr3g0485571' => 'rch', 'RcHm_v2.0_Chr4g0416551' => 'rch', 'RcHm_v2.0_Chr5g0065831' => 'rch', 'Rhsim01G0230500' => 'rsi', 'Rhsim05G0194000' => 'rsi', 'Rhsim08G0250400' => 'rsi', 'Sabra02G0131000' => 'sbr', 'Sabra06G0066300' => 'sbr', 'Sabra08G0115500' => 'sbr', 'Sabra09G0023900' => 'sbr', 'Sabra10G0054000' => 'sbr', 'Sabra14G0081500' => 'sbr', 'Sabra16G0147100' => 'sbr', 'SalBow2G2957' => 'sbo', 'SalBow4G3320' => 'sbo', 'SalBow8G1894' => 'sbo', 'Sc07g0007950' => 'sci', 'Sc12g0001360' => 'sci', 'Sc13g0004330' => 'sci', 'Sc20g0005010' => 'sci', 'Sed0000361' => 'sed', 'Sed0001706' => 'sed', 'Sed0002422' => 'sed', 'Sed0004029' => 'sed', 'Sed0004602' => 'sed', 'Sed0004943' => 'sed', 'Sed0008646' => 'sed', 'Sed0023313' => 'sed', 'Sed0024843' => 'sed', 'SEGI_00081' => 'sgi', 'SEGI_00947' => 'sgi', 'SEGI_04046' => 'sgi', 'SEGI_06880' => 'sgi', 'SEGI_09736' => 'sgi', 'SEGI_12741' => 'sgi', 'SEGI_14530' => 'sgi', 'SEGI_20705' => 'sgi', 'SEGI_26088' => 'sgi', 'SEGI_28323' => 'sgi', 'SEGI_33343' => 'sgi', 'SGA_v2.0_scaffold126G33775' => 'sas', 'SGA_v2.0_scaffold2G01337' => 'sas', 'SGA_v2.0_scaffold38G15006' => 'sas', 'SGA_v2.0_scaffold39G15264' => 'sas', 'SGA_v2.0_scaffold453G51880' => 'sas', 'SHI12696' => 'shi', 'SMO367G1096' => 'smo', 'Solyc01g068630.3' => 'sly', 'Solyc05g011880.3' => 'sly', 'Solyc06g076300.3' => 'sly', 'Solyc09g010940.4' => 'sly', 'Solyc09g075890.3' => 'sly', 'Sopen01g030560' => 'spe', 'Sopen05g006630' => 'spe', 'Sopen06g032720' => 'spe', 'Sopen09g005660' => 'spe', 'Sopen09g030690' => 'spe', 'Sp4g14540' => 'spa', 'Sp4g20030' => 'spa', 'Sp5g01320' => 'spa', 'Sp6g21170' => 'spa', 'Sp6g21180' => 'spa', 'Sp6g21190' => 'spa', 'Sp6g40220' => 'spa', 'TAR362G0122' => 'tar', 'TAR362G1338' => 'tar', 'TAR369G0590' => 'tar', 'TAR371G0824' => 'tar', 'TAR622G1429' => 'tar', 'TAR623G0734' => 'tar', 'TAR625G0441' => 'tar', 'TAR629G0976' => 'tar', 'TAR633G1195' => 'tar', 'TAR636G2660' => 'tar', 'THA.LOC104799440' => 'tha', 'THA.LOC104800966' => 'tha', 'THA.LOC104806559' => 'tha', 'THA.LOC104810765' => 'tha', 'THA.LOC104816266' => 'tha', 'THA.LOC104817419' => 'tha', 'THA.LOC104827021' => 'tha', 'Thecc.01G327400' => 'tca', 'Thecc.04G229200' => 'tca', 'Thecc.05G037400' => 'tca', 'Thecc.09G318600' => 'tca', 'Thecc.09G318700' => 'tca', 'Thhalv10006238m.g' => 'esa', 'Thhalv10014321m.g' => 'esa', 'Thhalv10014335m.g' => 'esa', 'Thhalv10015826m.g' => 'esa', 'Thhalv10017107m.g' => 'esa', 'Thhalv10017180m.g' => 'esa', 'Thhalv10029339m.g' => 'esa', 'TPR.G1699' => 'tpr', 'TPR.G23609' => 'tpr', 'TPR.G3081' => 'tpr', 'TPR.G40397' => 'tpr', 'TPR.G5522' => 'tpr', 'TPR.G5618' => 'tpr', 'TPR.G5626' => 'tpr', 'TWI09G1632' => 'twi', 'TWI23G1230' => 'twi', 'TWI53G1064' => 'twi', 'TWI59G0751' => 'twi', 'TWI74G0947' => 'twi', 'TWI77G0337' => 'twi', 'TWI79G1254' => 'twi', 'unitig_0.g2341' => 'ugi', 'unitig_26.g10006' => 'ugi', 'unitig_26.g10008' => 'ugi', 'unitig_26.g9192' => 'ugi', 'vmacro14547' => 'vma', 'vmacro15333' => 'vma', 'vmacro18743' => 'vma', 'vmacro20166' => 'vma', 'VMungo0331G0523' => 'vmu', 'VMungo0331G1202' => 'vmu', 'VMungo0720G1228' => 'vmu', 'VMungo0720G1514' => 'vmu', 'VMungo1080G0169' => 'vmu', 'VMungo1127G1475' => 'vmu', 'VMungo1383G1208' => 'vmu', 'VMungo1383G1698' => 'vmu', 'Zm00001eb012270' => 'zma', 'Zm00001eb054100' => 'zma', 'Zm00001eb063350' => 'zma', 'Zm00001eb328560' => 'zma', 'Zm00001eb342820' => 'zma', 'Zm00001eb362210' => 'zma', 'Zm00001eb397730' => 'zma', 'Zm00001eb399750' => 'zma' ) $gf_id = 'HOM05D000959' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000959' ) $data_identifier = 'HOM05D000959' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 5, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 5, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 10, 'mbi' => (int) 3, 'mco' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 2, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 3, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 11, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399750' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000959', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '622', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p07100' => 'bna', 'A03p11720' => 'bna', 'A05p08300' => 'bna', 'A05p13380' => 'bna', 'A09p54130' => 'bna', 'A10p16690' => 'bna', 'A10p16700' => 'bna', 'A10p33390' => 'bna', 'Aa31LG10G16020' => 'aar', 'Aa31LG1G11810' => 'aar', 'Aa31LG1G11830' => 'aar', 'Aa31LG1G22510' => 'aar', 'Aa31LG5G4890' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5793' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2310' => 'aag', 'Actinidia08499' => 'ach', 'Actinidia11262' => 'ach', 'Actinidia23926' => 'ach', 'Actinidia34420' => 'ach', 'Actinidia36970' => 'ach', 'Ah.02g111220' => 'amhyb', 'Ah.15g097750' => 'amhyb', 'AL4G27500' => 'aly', 'AL6G11470' => 'aly', 'AL8G35950' => 'aly', 'AL8G35960' => 'aly', 'AL8G35970' => 'aly', 'Aqoxy1G00912' => 'aox', 'Aqoxy2G02253' => 'aox', 'Aqoxy2G02411' => 'aox', 'Aqoxy5G00485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BZ66YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K8ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM4FUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6BF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HFV7XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25JBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0YNNV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MAKK6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P70IT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP2Z6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V61LZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YWP64R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3S9AI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7PGHH' => 'arhy', 'AT2G32150' => 'ath', 'AT3G62040' => 'ath', 'AT5G02230' => 'ath', 'AT5G59480' => 'ath', 'AT5G59490' => 'ath', 'ATR0332G060' => 'atr', 'ATR0559G190' => 'atr', 'ATR0693G294' => 'atr', 'Atru.chr3.3975' => 'acertr', 'Atru.chr3.3976' => 'acertr', 'Atru.chr3.3977' => 'acertr', 'Atru.chr4.2498' => 'acertr', 'Atru.chr5.838' => 'acertr', 'Atru.chr8.1990' => 'acertr', 'Atru.chr8.1991' => 'acertr', 'Atru.chr8.1992' => 'acertr', 'AUR62001759' => 'cqu', 'AUR62009545' => 'cqu', 'AUR62010474' => 'cqu', 'AUR62025820' => 'cqu', 'AUR62030422' => 'cqu', 'AUR62033605' => 'cqu', 'AUR62038615' => 'cqu', 'AUR62041347' => 'cqu', 'BcaB01g04574' => 'bca', 'BcaB02g09263' => 'bca', 'BcaB02g10453' => 'bca', 'BcaB05g22513' => 'bca', 'BcaB08g36253' => 'bca', 'BcaB08g36254' => 'bca', 'BcaC01g06519' => 'bca', 'BcaC02g11889' => 'bca', 'BcaC03g14010' => 'bca', 'BcaC03g18439' => 'bca', 'BcaC04g19765' => 'bca', 'BcaC09g48432' => 'bca', 'BcaNung07302' => 'bca', 'BolC2t06040H' => 'bol', 'BolC2t07346H' => 'bol', 'BolC3t13817H' => 'bol', 'BolC4t22625H' => 'bol', 'BolC4t23297H' => 'bol', 'BolC8t51278H' => 'bol', 'BolC9t58050H' => 'bol', 'BolC9t58051H' => 'bol', 'BolC9t60163H' => 'bol', 'BraA02t04712Z' => 'bra', 'BraA02t05791Z' => 'bra', 'BraA03t10483Z' => 'bra', 'BraA05t19795Z' => 'bra', 'BraA05t20276Z' => 'bra', 'BraA09t40827Z' => 'bra', 'BraA10t43750Z' => 'bra', 'BraA10t43751Z' => 'bra', 'BraA10t45370Z' => 'bra', 'C02p00400' => 'bna', 'C02p12460' => 'bna', 'C03p13680' => 'bna', 'C04p10270' => 'bna', 'C04p17500' => 'bna', 'C08p37010' => 'bna', 'C09p51880' => 'bna', 'C09p51890' => 'bna', 'C09p74300' => 'bna', 'CAN.G179.26' => 'can', 'CAN.G3384.1' => 'can', 'CAN.G394.68' => 'can', 'CAN.G907.13' => 'can', 'CANSAT11G0012' => 'cansat', 'CANSAT25G1586' => 'cansat', 'CANSAT35G0735' => 'cansat', 'CANSAT54G0556' => 'cansat', 'CANSAT64G0356' => 'cansat', 'CANSAT78G2042' => 'cansat', 'CARHR125920' => 'chi', 'CARHR131910' => 'chi', 'CARHR172390' => 'chi', 'CARHR211140' => 'chi', 'CARHR285850' => 'chi', 'CARHR285860' => 'chi', 'Carub.0004s1347' => 'cru', 'Carub.0004s1960' => 'cru', 'Carub.0005s2880' => 'cru', 'Carub.0006s0107' => 'cru', 'Carub.0008s2015' => 'cru', 'Carub.0008s2016' => 'cru', 'Carub.0008s2017' => 'cru', 'Ca_01315_v3' => 'car', 'Ca_05063_v3' => 'car', 'Ca_10231_v3' => 'car', 'Ca_10913_v3' => 'car', 'Ca_19156_v3' => 'car', 'Ca_23644_v3' => 'car', 'Ca_26735_v3' => 'car', 'Cc01_g13130' => 'ccan', 'Cc02_g21690' => 'ccan', 'Cc03_g03600' => 'ccan', 'Cc06_g02510' => 'ccan', 'CDE02G1265' => 'cde', 'CDE05G0415' => 'cde', 'CDE08G1082' => 'cde', 'Cfa005780' => 'cfa', 'Cfa011522' => 'cfa', 'Cfa011523' => 'cfa', 'Cfa015627' => 'cfa', 'Cfa017359' => 'cfa', 'Ciclev10005687m.g' => 'ccl', 'Ciclev10012173m.g' => 'ccl', 'Ciclev10021621m.g' => 'ccl', 'Ciclev10028968m.g' => 'ccl', 'Ciclev10029907m.g' => 'ccl', 'CiPaw.01G164800' => 'cil', 'CiPaw.07G083700' => 'cil', 'CiPaw.07G127000' => 'cil', 'CiPaw.07G136900' => 'cil', 'CiPaw.08G081700' => 'cil', 'CiPaw.09G194600' => 'cil', 'CiPaw.10G146500' => 'cil', 'CiPaw.13G091500' => 'cil', 'CiPaw.13G091600' => 'cil', 'ClCG00G003390' => 'cla', 'ClCG01G007220' => 'cla', 'ClCG03G001370' => 'cla', 'ClCG04G008100' => 'cla', 'ClCG06G006110' => 'cla', 'ClCG06G006130' => 'cla', 'ClCG10G021210' => 'cla', 'COL.COLO4_07648' => 'col', 'COL.COLO4_07650' => 'col', 'COL.COLO4_07651' => 'col', 'COL.COLO4_14780' => 'col', 'COL.COLO4_18546' => 'col', 'COL.COLO4_18547' => 'col', 'COL.COLO4_23103' => 'col', 'COL.COLO4_30419' => 'col', 'COL.COLO4_34232' => 'col', 'Cpa.g.sc169.20' => 'cpa', 'Cpa.g.sc57.45' => 'cpa', 'Cpa.g.sc58.124' => 'cpa', 'Cpa.g.sc58.125' => 'cpa', 'Cpa.g.sc81.118' => 'cpa', 'Cpa.g.sc81.119' => 'cpa', 'Cre12.g524700' => 'cre', 'CsaV3_1G034430' => 'csa', 'CsaV3_1G034440' => 'csa', 'CsaV3_1G034450' => 'csa', 'CsaV3_3G034830' => 'csa', 'CsaV3_4G025090' => 'csa', 'CsaV3_5G018660' => 'csa', 'CsaV3_6G038160' => 'csa', 'CSS0003447' => 'camsi', 'CSS0017840' => 'camsi', 'CSS0019260' => 'camsi', 'CSS0040375' => 'camsi', 'CSS0042533' => 'camsi', 'DCAR_005960' => 'dca', 'DCAR_012104' => 'dca', 'DCAR_012105' => 'dca', 'DCAR_012293' => 'dca', 'DCAR_015632' => 'dca', 'DCAR_024602' => 'dca', 'DCAR_028752' => 'dca', 'Dinv06261' => 'din', 'Dinv13982' => 'din', 'Dinv17029' => 'din', 'Dinv18463' => 'din', 'Dinv33181' => 'din', 'Dinv35585' => 'din', 'Dinv37161' => 'din', 'Dinv42977' => 'din', 'Dinv43122' => 'din', 'Dinv44517' => 'din', 'Duzib093G0256' => 'dzi', 'Duzib106G1254' => 'dzi', 'Duzib128G1789' => 'dzi', 'Duzib133G0633' => 'dzi', 'Duzib138G0510' => 'dzi', 'Duzib150G1084' => 'dzi', 'Duzib168G0488' => 'dzi', 'Duzib168G1523' => 'dzi', 'Duzib170G0133' => 'dzi', 'ECA234G1433' => 'eca', 'ECA236G1432' => 'eca', 'ECA236G2256' => 'eca', 'ECA236G2365' => 'eca', 'ECA236G4830' => 'eca', 'ECA248G1505' => 'eca', 'EL10Ac3g06431' => 'bvu', 'EL10Ac5g12577' => 'bvu', 'EL10Ac6g13533' => 'bvu', 'EL10Ac7g16045' => 'bvu', 'Eucgr.A01281' => 'egr', 'Eucgr.B02326' => 'egr', 'Eucgr.H03532' => 'egr', 'Eucgr.K00553' => 'egr', 'Eucgr.K03116' => 'egr', 'FAN02G3963' => 'fan', 'FAN05G0438' => 'fan', 'FAN09G2434' => 'fan', 'FAN12G3984' => 'fan', 'FAN14G0798' => 'fan', 'FAN17G0652' => 'fan', 'FAN19G1988' => 'fan', 'FAN22G0632' => 'fan', 'FAN23G0387' => 'fan', 'FAN26G1323' => 'fan', 'FAN28G0666' => 'fan', 'FvH4_1g26080' => 'fve', 'FvH4_3g36780' => 'fve', 'FvH4_4g15270' => 'fve', 'FvH4_6g13490' => 'fve', 'Glyma.01G098700' => 'gma', 'Glyma.03G065900' => 'gma', 'Glyma.03G073754' => 'gma', 'Glyma.03G073758' => 'gma', 'Glyma.03G083200' => 'gma', 'Glyma.03G225500' => 'gma', 'Glyma.05G037766' => 'gma', 'Glyma.07G133500' => 'gma', 'Glyma.10G139400' => 'gma', 'Glyma.10G248900' => 'gma', 'Glyma.11G137800' => 'gma', 'Glyma.12G061300' => 'gma', 'Glyma.13G337900' => 'gma', 'Glyma.15G036600' => 'gma', 'Glyma.18G182800' => 'gma', 'Glyma.19G222500' => 'gma', 'Glyma.20G144800' => 'gma', 'Gohir.A01G222000' => 'ghi', 'Gohir.A03G044000' => 'ghi', 'Gohir.A03G044100' => 'ghi', 'Gohir.A04G083100' => 'ghi', 'Gohir.A07G127200' => 'ghi', 'Gohir.A07G132400' => 'ghi', 'Gohir.A08G000700' => 'ghi', 'Gohir.A11G327300' => 'ghi', 'Gohir.D01G211500' => 'ghi', 'Gohir.D03G123400' => 'ghi', 'Gohir.D03G123500' => 'ghi', 'Gohir.D04G121800' => 'ghi', 'Gohir.D07G131500' => 'ghi', 'Gohir.D07G136600' => 'ghi', 'Gohir.D08G011600' => 'ghi', 'Gohir.D11G346200' => 'ghi', 'Gorai.001G142800' => 'gra', 'Gorai.001G148700' => 'gra', 'Gorai.002G257300' => 'gra', 'Gorai.003G130000' => 'gra', 'Gorai.003G130100' => 'gra', 'Gorai.004G005300' => 'gra', 'Gorai.007G376500' => 'gra', 'Gorai.012G104700' => 'gra', 'GSVIVG01017946001' => 'vvi', 'GSVIVG01024928001' => 'vvi', 'GSVIVG01028227001' => 'vvi', 'GSVIVG01034151001' => 'vvi', 'HanXRQChr05g0135031' => 'han', 'HanXRQChr05g0135041' => 'han', 'HanXRQChr05g0140021' => 'han', 'HanXRQChr06g0178981' => 'han', 'HanXRQChr07g0188251' => 'han', 'HanXRQChr08g0235311' => 'han', 'HanXRQChr09g0271011' => 'han', 'HanXRQChr10g0293321' => 'han', 'HanXRQChr13g0388171' => 'han', 'Haze_00916' => 'cav', 'Haze_05063' => 'cav', 'Haze_20814' => 'cav', 'Haze_24128' => 'cav', 'Hma1.2p1_0745F.1_g212010' => 'hma', 'Hma1.2p1_0757F.1_g213260' => 'hma', 'Hma1.2p1_0936F.1_g238840' => 'hma', 'Hma1.2p1_1735F.1_g299890' => 'hma', 'Hma1.2p1_1861F.1_g305685' => 'hma', 'HPP92_003397' => 'vpl', 'HPP92_012597' => 'vpl', 'HPP92_015520' => 'vpl', 'HPP92_015539' => 'vpl', 'HPP92_020373' => 'vpl', 'Hund04938' => 'sun', 'Hund10677' => 'sun', 'Hund11033' => 'sun', 'Hund12155' => 'sun', 'Lalb_Chr01g0022551' => 'lal', 'Lalb_Chr03g0042341' => 'lal', 'Lalb_Chr07g0192931' => 'lal', 'Lalb_Chr12g0209551' => 'lal', 'Lalb_Chr19g0125251' => 'lal', 'Lalb_Chr19g0137891' => 'lal', 'Lalb_Chr21g0304641' => 'lal', 'Lalb_Chr21g0309881' => 'lal', 'Lj1A5T12' => 'lonja', 'Lj1C148G10' => 'lonja', 'Lj2A93T83' => 'lonja', 'Lj3A738G68' => 'lonja', 'Lj3C966T1' => 'lonja', 'Lj3g0018958' => 'lja', 'Lj3g0021831' => 'lja', 'Lj3g0025443' => 'lja', 'Lj4g0026809' => 'lja', 'Lj5g0012558' => 'lja', 'Lj5g0021586' => 'lja', 'Lsat_1_v5_gn_5_156840' => 'lsa', 'Lsat_1_v5_gn_8_73460' => 'lsa', 'Lsat_1_v5_gn_8_73481' => 'lsa', 'Lsat_1_v5_gn_9_31601' => 'lsa', 'Lsat_1_v5_gn_9_77320' => 'lsa', 'Manes.01G171300' => 'mes', 'Manes.01G171400' => 'mes', 'Manes.01G236100' => 'mes', 'Manes.02G130500' => 'mes', 'Manes.02G130600' => 'mes', 'Manes.03G180200' => 'mes', 'Manes.05G007000' => 'mes', 'Manes.08G084400' => 'mes', 'Manes.09G092600' => 'mes', 'Manes.15G027900' => 'mes', 'MBI04_g40948_MAGBIO' => 'mbi', 'MBI14_g12123_MAGBIO' => 'mbi', 'MBI18_g28915_MAGBIO' => 'mbi', 'MCO09G053' => 'mco', 'MCO11G782' => 'mco', 'MCO15G215' => 'mco', 'MD03G1088500' => 'mdo', 'MD03G1088600' => 'mdo', 'MD04G1130800' => 'mdo', 'MD09G1291700' => 'mdo', 'MD11G1097500' => 'mdo', 'MD11G1097600' => 'mdo', 'MD12G1143900' => 'mdo', 'MD13G1191400' => 'mdo', 'MD16G1191500' => 'mdo', 'Medtr1g085570' => 'mtr', 'Medtr1g104610' => 'mtr', 'Medtr2g097520' => 'mtr', 'Medtr4g021800' => 'mtr', 'Medtr4g021825' => 'mtr', 'Medtr4g064270' => 'mtr', 'Medtr4g064380' => 'mtr', 'Medtr7g062150' => 'mtr', 'MELO3C003138.2' => 'cme', 'MELO3C005187.2' => 'cme', 'MELO3C009252.2' => 'cme', 'MELO3C014481.2' => 'cme', 'MELO3C020616.2' => 'cme', 'MELO3C020617.2' => 'cme', 'MELO3C020618.2' => 'cme', 'Migut.G00328' => 'egut', 'Migut.J00320' => 'egut', 'Migut.L01000' => 'egut', 'Migut.L01953' => 'egut', 'MSTRG.10253' => 'ama', 'MSTRG.19077' => 'ama', 'MSTRG.26780' => 'ama', 'MSTRG.4023' => 'ama', 'MSTRG.5655' => 'ama', 'MSTRG.9992' => 'ama', 'Nitab4.5_0000043g0310' => 'nta', 'Nitab4.5_0000463g0080' => 'nta', 'Nitab4.5_0000705g0170' => 'nta', 'Nitab4.5_0001326g0060' => 'nta', 'Nitab4.5_0001628g0030' => 'nta', 'Nitab4.5_0002103g0110' => 'nta', 'Nitab4.5_0002946g0030' => 'nta', 'Nitab4.5_0004639g0030' => 'nta', 'Nn2g11149' => 'nnu', 'Nn2g13389' => 'nnu', 'Nn4g25326' => 'nnu', 'Nn4g26290' => 'nnu', 'Nn5g29865' => 'nnu', 'Oeu004163.1' => 'oeu', 'Oeu006901.1' => 'oeu', 'Oeu010096.1' => 'oeu', 'Oeu024340.1' => 'oeu', 'Oeu048369.1' => 'oeu', 'Os01g0973000' => 'osa', 'Os03g0273800' => 'osa', 'Os03g0701200' => 'osa', 'Os03g0834050' => 'osa', 'Os07g0634400' => 'osa', 'Peaxi162Scf00092g01414' => 'pax', 'Peaxi162Scf00165g00818' => 'pax', 'Peaxi162Scf00309g00516' => 'pax', 'Peaxi162Scf00774g00218' => 'pax', 'PGR004G1824' => 'pgr', 'PGR004G2606' => 'pgr', 'PGR031G2716' => 'pgr', 'PGR102G2460' => 'pgr', 'PGR142G2599' => 'pgr', 'PGSC0003DMG400000843' => 'stu', 'PGSC0003DMG400008829' => 'stu', 'PGSC0003DMG400030418' => 'stu', 'PGSC0003DMG400031834' => 'stu', 'PGSC0003DMG401028300' => 'stu', 'PGSC0003DMG402028300' => 'stu', 'Phvul.001G219300' => 'pvu', 'Phvul.007G056000' => 'pvu', 'Phvul.007G208000' => 'pvu', 'Phvul.008G119500' => 'pvu', 'Phvul.010G011200' => 'pvu', 'Phvul.010G014800' => 'pvu', 'Phvul.011G062900' => 'pvu', 'Phvul.L007043' => 'pvu', 'Potri.001G242300' => 'ptr', 'Potri.002G185300' => 'ptr', 'Potri.006G086900' => 'ptr', 'Potri.008G151700' => 'ptr', 'Potri.009G033500' => 'ptr', 'Potri.010G089300' => 'ptr', 'Potri.014G110800' => 'ptr', 'Pp3c27_8130' => 'ppa', 'Pp3c6_27410' => 'ppa', 'PRCOL_00001659' => 'pco', 'PRCOL_00001927' => 'pco', 'PRCOL_00003649' => 'pco', 'Prupe.1G011600' => 'ppe', 'Prupe.3G000800' => 'ppe', 'Prupe.3G001100' => 'ppe', 'Prupe.6G072700' => 'ppe', 'Prupe.6G072800' => 'ppe', 'Prupe.6G257300' => 'ppe', 'Prupe.8G033000' => 'ppe', 'Psat0s2633g0080' => 'psa', 'Psat0s3396g0080' => 'psa', 'Psat0s3396g0200' => 'psa', 'Psat3g139080' => 'psa', 'Psat5g285080' => 'psa', 'Psat6g157760' => 'psa', 'Psat6g208440' => 'psa', 'Psat7g215320' => 'psa', 'Psat7g215400' => 'psa', 'Psat7g235600' => 'psa', 'Psat7g235760' => 'psa', 'PSO063G4603' => 'pso', 'PSO210G0182' => 'pso', 'PSO210G0196' => 'pso', 'PSO339G0394' => 'pso', 'PSO339G4127' => 'pso', 'PSO513G0064' => 'pso', 'PSO761G0079' => 'pso', 'QL01p031003' => 'qlo', 'QL01p031078' => 'qlo', 'QL06p003004' => 'qlo', 'QL07p048731' => 'qlo', 'QL09p037427' => 'qlo', 'RcHm_v2.0_Chr3g0466361' => 'rch', 'RcHm_v2.0_Chr3g0485571' => 'rch', 'RcHm_v2.0_Chr4g0416551' => 'rch', 'RcHm_v2.0_Chr5g0065831' => 'rch', 'Rhsim01G0230500' => 'rsi', 'Rhsim05G0194000' => 'rsi', 'Rhsim08G0250400' => 'rsi', 'Sabra02G0131000' => 'sbr', 'Sabra06G0066300' => 'sbr', 'Sabra08G0115500' => 'sbr', 'Sabra09G0023900' => 'sbr', 'Sabra10G0054000' => 'sbr', 'Sabra14G0081500' => 'sbr', 'Sabra16G0147100' => 'sbr', 'SalBow2G2957' => 'sbo', 'SalBow4G3320' => 'sbo', 'SalBow8G1894' => 'sbo', 'Sc07g0007950' => 'sci', 'Sc12g0001360' => 'sci', 'Sc13g0004330' => 'sci', 'Sc20g0005010' => 'sci', 'Sed0000361' => 'sed', 'Sed0001706' => 'sed', 'Sed0002422' => 'sed', 'Sed0004029' => 'sed', 'Sed0004602' => 'sed', 'Sed0004943' => 'sed', 'Sed0008646' => 'sed', 'Sed0023313' => 'sed', 'Sed0024843' => 'sed', 'SEGI_00081' => 'sgi', 'SEGI_00947' => 'sgi', 'SEGI_04046' => 'sgi', 'SEGI_06880' => 'sgi', 'SEGI_09736' => 'sgi', 'SEGI_12741' => 'sgi', 'SEGI_14530' => 'sgi', 'SEGI_20705' => 'sgi', 'SEGI_26088' => 'sgi', 'SEGI_28323' => 'sgi', 'SEGI_33343' => 'sgi', 'SGA_v2.0_scaffold126G33775' => 'sas', 'SGA_v2.0_scaffold2G01337' => 'sas', 'SGA_v2.0_scaffold38G15006' => 'sas', 'SGA_v2.0_scaffold39G15264' => 'sas', 'SGA_v2.0_scaffold453G51880' => 'sas', 'SHI12696' => 'shi', 'SMO367G1096' => 'smo', 'Solyc01g068630.3' => 'sly', 'Solyc05g011880.3' => 'sly', 'Solyc06g076300.3' => 'sly', 'Solyc09g010940.4' => 'sly', 'Solyc09g075890.3' => 'sly', 'Sopen01g030560' => 'spe', 'Sopen05g006630' => 'spe', 'Sopen06g032720' => 'spe', 'Sopen09g005660' => 'spe', 'Sopen09g030690' => 'spe', 'Sp4g14540' => 'spa', 'Sp4g20030' => 'spa', 'Sp5g01320' => 'spa', 'Sp6g21170' => 'spa', 'Sp6g21180' => 'spa', 'Sp6g21190' => 'spa', 'Sp6g40220' => 'spa', 'TAR362G0122' => 'tar', 'TAR362G1338' => 'tar', 'TAR369G0590' => 'tar', 'TAR371G0824' => 'tar', 'TAR622G1429' => 'tar', 'TAR623G0734' => 'tar', 'TAR625G0441' => 'tar', 'TAR629G0976' => 'tar', 'TAR633G1195' => 'tar', 'TAR636G2660' => 'tar', 'THA.LOC104799440' => 'tha', 'THA.LOC104800966' => 'tha', 'THA.LOC104806559' => 'tha', 'THA.LOC104810765' => 'tha', 'THA.LOC104816266' => 'tha', 'THA.LOC104817419' => 'tha', 'THA.LOC104827021' => 'tha', 'Thecc.01G327400' => 'tca', 'Thecc.04G229200' => 'tca', 'Thecc.05G037400' => 'tca', 'Thecc.09G318600' => 'tca', 'Thecc.09G318700' => 'tca', 'Thhalv10006238m.g' => 'esa', 'Thhalv10014321m.g' => 'esa', 'Thhalv10014335m.g' => 'esa', 'Thhalv10015826m.g' => 'esa', 'Thhalv10017107m.g' => 'esa', 'Thhalv10017180m.g' => 'esa', 'Thhalv10029339m.g' => 'esa', 'TPR.G1699' => 'tpr', 'TPR.G23609' => 'tpr', 'TPR.G3081' => 'tpr', 'TPR.G40397' => 'tpr', 'TPR.G5522' => 'tpr', 'TPR.G5618' => 'tpr', 'TPR.G5626' => 'tpr', 'TWI09G1632' => 'twi', 'TWI23G1230' => 'twi', 'TWI53G1064' => 'twi', 'TWI59G0751' => 'twi', 'TWI74G0947' => 'twi', 'TWI77G0337' => 'twi', 'TWI79G1254' => 'twi', 'unitig_0.g2341' => 'ugi', 'unitig_26.g10006' => 'ugi', 'unitig_26.g10008' => 'ugi', 'unitig_26.g9192' => 'ugi', 'vmacro14547' => 'vma', 'vmacro15333' => 'vma', 'vmacro18743' => 'vma', 'vmacro20166' => 'vma', 'VMungo0331G0523' => 'vmu', 'VMungo0331G1202' => 'vmu', 'VMungo0720G1228' => 'vmu', 'VMungo0720G1514' => 'vmu', 'VMungo1080G0169' => 'vmu', 'VMungo1127G1475' => 'vmu', 'VMungo1383G1208' => 'vmu', 'VMungo1383G1698' => 'vmu', 'Zm00001eb012270' => 'zma', 'Zm00001eb054100' => 'zma', 'Zm00001eb063350' => 'zma', 'Zm00001eb328560' => 'zma', 'Zm00001eb342820' => 'zma', 'Zm00001eb362210' => 'zma', 'Zm00001eb397730' => 'zma', 'Zm00001eb399750' => 'zma' ), 'gf_id' => 'HOM05D000959', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000959' ), 'data_identifier' => 'HOM05D000959', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000959', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '622', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p07100' => 'bna', 'A03p11720' => 'bna', 'A05p08300' => 'bna', 'A05p13380' => 'bna', 'A09p54130' => 'bna', 'A10p16690' => 'bna', 'A10p16700' => 'bna', 'A10p33390' => 'bna', 'Aa31LG10G16020' => 'aar', 'Aa31LG1G11810' => 'aar', 'Aa31LG1G11830' => 'aar', 'Aa31LG1G22510' => 'aar', 'Aa31LG5G4890' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5793' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2310' => 'aag', 'Actinidia08499' => 'ach', 'Actinidia11262' => 'ach', 'Actinidia23926' => 'ach', 'Actinidia34420' => 'ach', 'Actinidia36970' => 'ach', 'Ah.02g111220' => 'amhyb', 'Ah.15g097750' => 'amhyb', 'AL4G27500' => 'aly', 'AL6G11470' => 'aly', 'AL8G35950' => 'aly', 'AL8G35960' => 'aly', 'AL8G35970' => 'aly', 'Aqoxy1G00912' => 'aox', 'Aqoxy2G02253' => 'aox', 'Aqoxy2G02411' => 'aox', 'Aqoxy5G00485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BZ66YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K8ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM4FUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6BF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HFV7XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25JBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0YNNV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MAKK6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P70IT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP2Z6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V61LZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YWP64R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3S9AI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7PGHH' => 'arhy', 'AT2G32150' => 'ath', 'AT3G62040' => 'ath', 'AT5G02230' => 'ath', 'AT5G59480' => 'ath', 'AT5G59490' => 'ath', 'ATR0332G060' => 'atr', 'ATR0559G190' => 'atr', 'ATR0693G294' => 'atr', 'Atru.chr3.3975' => 'acertr', 'Atru.chr3.3976' => 'acertr', 'Atru.chr3.3977' => 'acertr', 'Atru.chr4.2498' => 'acertr', 'Atru.chr5.838' => 'acertr', 'Atru.chr8.1990' => 'acertr', 'Atru.chr8.1991' => 'acertr', 'Atru.chr8.1992' => 'acertr', 'AUR62001759' => 'cqu', 'AUR62009545' => 'cqu', 'AUR62010474' => 'cqu', 'AUR62025820' => 'cqu', 'AUR62030422' => 'cqu', 'AUR62033605' => 'cqu', 'AUR62038615' => 'cqu', 'AUR62041347' => 'cqu', 'BcaB01g04574' => 'bca', 'BcaB02g09263' => 'bca', 'BcaB02g10453' => 'bca', 'BcaB05g22513' => 'bca', 'BcaB08g36253' => 'bca', 'BcaB08g36254' => 'bca', 'BcaC01g06519' => 'bca', 'BcaC02g11889' => 'bca', 'BcaC03g14010' => 'bca', 'BcaC03g18439' => 'bca', 'BcaC04g19765' => 'bca', 'BcaC09g48432' => 'bca', 'BcaNung07302' => 'bca', 'BolC2t06040H' => 'bol', 'BolC2t07346H' => 'bol', 'BolC3t13817H' => 'bol', 'BolC4t22625H' => 'bol', 'BolC4t23297H' => 'bol', 'BolC8t51278H' => 'bol', 'BolC9t58050H' => 'bol', 'BolC9t58051H' => 'bol', 'BolC9t60163H' => 'bol', 'BraA02t04712Z' => 'bra', 'BraA02t05791Z' => 'bra', 'BraA03t10483Z' => 'bra', 'BraA05t19795Z' => 'bra', 'BraA05t20276Z' => 'bra', 'BraA09t40827Z' => 'bra', 'BraA10t43750Z' => 'bra', 'BraA10t43751Z' => 'bra', 'BraA10t45370Z' => 'bra', 'C02p00400' => 'bna', 'C02p12460' => 'bna', 'C03p13680' => 'bna', 'C04p10270' => 'bna', 'C04p17500' => 'bna', 'C08p37010' => 'bna', 'C09p51880' => 'bna', 'C09p51890' => 'bna', 'C09p74300' => 'bna', 'CAN.G179.26' => 'can', 'CAN.G3384.1' => 'can', 'CAN.G394.68' => 'can', 'CAN.G907.13' => 'can', 'CANSAT11G0012' => 'cansat', 'CANSAT25G1586' => 'cansat', 'CANSAT35G0735' => 'cansat', 'CANSAT54G0556' => 'cansat', 'CANSAT64G0356' => 'cansat', 'CANSAT78G2042' => 'cansat', 'CARHR125920' => 'chi', 'CARHR131910' => 'chi', 'CARHR172390' => 'chi', 'CARHR211140' => 'chi', 'CARHR285850' => 'chi', 'CARHR285860' => 'chi', 'Carub.0004s1347' => 'cru', 'Carub.0004s1960' => 'cru', 'Carub.0005s2880' => 'cru', 'Carub.0006s0107' => 'cru', 'Carub.0008s2015' => 'cru', 'Carub.0008s2016' => 'cru', 'Carub.0008s2017' => 'cru', 'Ca_01315_v3' => 'car', 'Ca_05063_v3' => 'car', 'Ca_10231_v3' => 'car', 'Ca_10913_v3' => 'car', 'Ca_19156_v3' => 'car', 'Ca_23644_v3' => 'car', 'Ca_26735_v3' => 'car', 'Cc01_g13130' => 'ccan', 'Cc02_g21690' => 'ccan', 'Cc03_g03600' => 'ccan', 'Cc06_g02510' => 'ccan', 'CDE02G1265' => 'cde', 'CDE05G0415' => 'cde', 'CDE08G1082' => 'cde', 'Cfa005780' => 'cfa', 'Cfa011522' => 'cfa', 'Cfa011523' => 'cfa', 'Cfa015627' => 'cfa', 'Cfa017359' => 'cfa', 'Ciclev10005687m.g' => 'ccl', 'Ciclev10012173m.g' => 'ccl', 'Ciclev10021621m.g' => 'ccl', 'Ciclev10028968m.g' => 'ccl', 'Ciclev10029907m.g' => 'ccl', 'CiPaw.01G164800' => 'cil', 'CiPaw.07G083700' => 'cil', 'CiPaw.07G127000' => 'cil', 'CiPaw.07G136900' => 'cil', 'CiPaw.08G081700' => 'cil', 'CiPaw.09G194600' => 'cil', 'CiPaw.10G146500' => 'cil', 'CiPaw.13G091500' => 'cil', 'CiPaw.13G091600' => 'cil', 'ClCG00G003390' => 'cla', 'ClCG01G007220' => 'cla', 'ClCG03G001370' => 'cla', 'ClCG04G008100' => 'cla', 'ClCG06G006110' => 'cla', 'ClCG06G006130' => 'cla', 'ClCG10G021210' => 'cla', 'COL.COLO4_07648' => 'col', 'COL.COLO4_07650' => 'col', 'COL.COLO4_07651' => 'col', 'COL.COLO4_14780' => 'col', 'COL.COLO4_18546' => 'col', 'COL.COLO4_18547' => 'col', 'COL.COLO4_23103' => 'col', 'COL.COLO4_30419' => 'col', 'COL.COLO4_34232' => 'col', 'Cpa.g.sc169.20' => 'cpa', 'Cpa.g.sc57.45' => 'cpa', 'Cpa.g.sc58.124' => 'cpa', 'Cpa.g.sc58.125' => 'cpa', 'Cpa.g.sc81.118' => 'cpa', 'Cpa.g.sc81.119' => 'cpa', 'Cre12.g524700' => 'cre', 'CsaV3_1G034430' => 'csa', 'CsaV3_1G034440' => 'csa', 'CsaV3_1G034450' => 'csa', 'CsaV3_3G034830' => 'csa', 'CsaV3_4G025090' => 'csa', 'CsaV3_5G018660' => 'csa', 'CsaV3_6G038160' => 'csa', 'CSS0003447' => 'camsi', 'CSS0017840' => 'camsi', 'CSS0019260' => 'camsi', 'CSS0040375' => 'camsi', 'CSS0042533' => 'camsi', 'DCAR_005960' => 'dca', 'DCAR_012104' => 'dca', 'DCAR_012105' => 'dca', 'DCAR_012293' => 'dca', 'DCAR_015632' => 'dca', 'DCAR_024602' => 'dca', 'DCAR_028752' => 'dca', 'Dinv06261' => 'din', 'Dinv13982' => 'din', 'Dinv17029' => 'din', 'Dinv18463' => 'din', 'Dinv33181' => 'din', 'Dinv35585' => 'din', 'Dinv37161' => 'din', 'Dinv42977' => 'din', 'Dinv43122' => 'din', 'Dinv44517' => 'din', 'Duzib093G0256' => 'dzi', 'Duzib106G1254' => 'dzi', 'Duzib128G1789' => 'dzi', 'Duzib133G0633' => 'dzi', 'Duzib138G0510' => 'dzi', 'Duzib150G1084' => 'dzi', 'Duzib168G0488' => 'dzi', 'Duzib168G1523' => 'dzi', 'Duzib170G0133' => 'dzi', 'ECA234G1433' => 'eca', 'ECA236G1432' => 'eca', 'ECA236G2256' => 'eca', 'ECA236G2365' => 'eca', 'ECA236G4830' => 'eca', 'ECA248G1505' => 'eca', 'EL10Ac3g06431' => 'bvu', 'EL10Ac5g12577' => 'bvu', 'EL10Ac6g13533' => 'bvu', 'EL10Ac7g16045' => 'bvu', 'Eucgr.A01281' => 'egr', 'Eucgr.B02326' => 'egr', 'Eucgr.H03532' => 'egr', 'Eucgr.K00553' => 'egr', 'Eucgr.K03116' => 'egr', 'FAN02G3963' => 'fan', 'FAN05G0438' => 'fan', 'FAN09G2434' => 'fan', 'FAN12G3984' => 'fan', 'FAN14G0798' => 'fan', 'FAN17G0652' => 'fan', 'FAN19G1988' => 'fan', 'FAN22G0632' => 'fan', 'FAN23G0387' => 'fan', 'FAN26G1323' => 'fan', 'FAN28G0666' => 'fan', 'FvH4_1g26080' => 'fve', 'FvH4_3g36780' => 'fve', 'FvH4_4g15270' => 'fve', 'FvH4_6g13490' => 'fve', 'Glyma.01G098700' => 'gma', 'Glyma.03G065900' => 'gma', 'Glyma.03G073754' => 'gma', 'Glyma.03G073758' => 'gma', 'Glyma.03G083200' => 'gma', 'Glyma.03G225500' => 'gma', 'Glyma.05G037766' => 'gma', 'Glyma.07G133500' => 'gma', 'Glyma.10G139400' => 'gma', 'Glyma.10G248900' => 'gma', 'Glyma.11G137800' => 'gma', 'Glyma.12G061300' => 'gma', 'Glyma.13G337900' => 'gma', 'Glyma.15G036600' => 'gma', 'Glyma.18G182800' => 'gma', 'Glyma.19G222500' => 'gma', 'Glyma.20G144800' => 'gma', 'Gohir.A01G222000' => 'ghi', 'Gohir.A03G044000' => 'ghi', 'Gohir.A03G044100' => 'ghi', 'Gohir.A04G083100' => 'ghi', 'Gohir.A07G127200' => 'ghi', 'Gohir.A07G132400' => 'ghi', 'Gohir.A08G000700' => 'ghi', 'Gohir.A11G327300' => 'ghi', 'Gohir.D01G211500' => 'ghi', 'Gohir.D03G123400' => 'ghi', 'Gohir.D03G123500' => 'ghi', 'Gohir.D04G121800' => 'ghi', 'Gohir.D07G131500' => 'ghi', 'Gohir.D07G136600' => 'ghi', 'Gohir.D08G011600' => 'ghi', 'Gohir.D11G346200' => 'ghi', 'Gorai.001G142800' => 'gra', 'Gorai.001G148700' => 'gra', 'Gorai.002G257300' => 'gra', 'Gorai.003G130000' => 'gra', 'Gorai.003G130100' => 'gra', 'Gorai.004G005300' => 'gra', 'Gorai.007G376500' => 'gra', 'Gorai.012G104700' => 'gra', 'GSVIVG01017946001' => 'vvi', 'GSVIVG01024928001' => 'vvi', 'GSVIVG01028227001' => 'vvi', 'GSVIVG01034151001' => 'vvi', 'HanXRQChr05g0135031' => 'han', 'HanXRQChr05g0135041' => 'han', 'HanXRQChr05g0140021' => 'han', 'HanXRQChr06g0178981' => 'han', 'HanXRQChr07g0188251' => 'han', 'HanXRQChr08g0235311' => 'han', 'HanXRQChr09g0271011' => 'han', 'HanXRQChr10g0293321' => 'han', 'HanXRQChr13g0388171' => 'han', 'Haze_00916' => 'cav', 'Haze_05063' => 'cav', 'Haze_20814' => 'cav', 'Haze_24128' => 'cav', 'Hma1.2p1_0745F.1_g212010' => 'hma', 'Hma1.2p1_0757F.1_g213260' => 'hma', 'Hma1.2p1_0936F.1_g238840' => 'hma', 'Hma1.2p1_1735F.1_g299890' => 'hma', 'Hma1.2p1_1861F.1_g305685' => 'hma', 'HPP92_003397' => 'vpl', 'HPP92_012597' => 'vpl', 'HPP92_015520' => 'vpl', 'HPP92_015539' => 'vpl', 'HPP92_020373' => 'vpl', 'Hund04938' => 'sun', 'Hund10677' => 'sun', 'Hund11033' => 'sun', 'Hund12155' => 'sun', 'Lalb_Chr01g0022551' => 'lal', 'Lalb_Chr03g0042341' => 'lal', 'Lalb_Chr07g0192931' => 'lal', 'Lalb_Chr12g0209551' => 'lal', 'Lalb_Chr19g0125251' => 'lal', 'Lalb_Chr19g0137891' => 'lal', 'Lalb_Chr21g0304641' => 'lal', 'Lalb_Chr21g0309881' => 'lal', 'Lj1A5T12' => 'lonja', 'Lj1C148G10' => 'lonja', 'Lj2A93T83' => 'lonja', 'Lj3A738G68' => 'lonja', 'Lj3C966T1' => 'lonja', 'Lj3g0018958' => 'lja', 'Lj3g0021831' => 'lja', 'Lj3g0025443' => 'lja', 'Lj4g0026809' => 'lja', 'Lj5g0012558' => 'lja', 'Lj5g0021586' => 'lja', 'Lsat_1_v5_gn_5_156840' => 'lsa', 'Lsat_1_v5_gn_8_73460' => 'lsa', 'Lsat_1_v5_gn_8_73481' => 'lsa', 'Lsat_1_v5_gn_9_31601' => 'lsa', 'Lsat_1_v5_gn_9_77320' => 'lsa', 'Manes.01G171300' => 'mes', 'Manes.01G171400' => 'mes', 'Manes.01G236100' => 'mes', 'Manes.02G130500' => 'mes', 'Manes.02G130600' => 'mes', 'Manes.03G180200' => 'mes', 'Manes.05G007000' => 'mes', 'Manes.08G084400' => 'mes', 'Manes.09G092600' => 'mes', 'Manes.15G027900' => 'mes', 'MBI04_g40948_MAGBIO' => 'mbi', 'MBI14_g12123_MAGBIO' => 'mbi', 'MBI18_g28915_MAGBIO' => 'mbi', 'MCO09G053' => 'mco', 'MCO11G782' => 'mco', 'MCO15G215' => 'mco', 'MD03G1088500' => 'mdo', 'MD03G1088600' => 'mdo', 'MD04G1130800' => 'mdo', 'MD09G1291700' => 'mdo', 'MD11G1097500' => 'mdo', 'MD11G1097600' => 'mdo', 'MD12G1143900' => 'mdo', 'MD13G1191400' => 'mdo', 'MD16G1191500' => 'mdo', 'Medtr1g085570' => 'mtr', 'Medtr1g104610' => 'mtr', 'Medtr2g097520' => 'mtr', 'Medtr4g021800' => 'mtr', 'Medtr4g021825' => 'mtr', 'Medtr4g064270' => 'mtr', 'Medtr4g064380' => 'mtr', 'Medtr7g062150' => 'mtr', 'MELO3C003138.2' => 'cme', 'MELO3C005187.2' => 'cme', 'MELO3C009252.2' => 'cme', 'MELO3C014481.2' => 'cme', 'MELO3C020616.2' => 'cme', 'MELO3C020617.2' => 'cme', 'MELO3C020618.2' => 'cme', 'Migut.G00328' => 'egut', 'Migut.J00320' => 'egut', 'Migut.L01000' => 'egut', 'Migut.L01953' => 'egut', 'MSTRG.10253' => 'ama', 'MSTRG.19077' => 'ama', 'MSTRG.26780' => 'ama', 'MSTRG.4023' => 'ama', 'MSTRG.5655' => 'ama', 'MSTRG.9992' => 'ama', 'Nitab4.5_0000043g0310' => 'nta', 'Nitab4.5_0000463g0080' => 'nta', 'Nitab4.5_0000705g0170' => 'nta', 'Nitab4.5_0001326g0060' => 'nta', 'Nitab4.5_0001628g0030' => 'nta', 'Nitab4.5_0002103g0110' => 'nta', 'Nitab4.5_0002946g0030' => 'nta', 'Nitab4.5_0004639g0030' => 'nta', 'Nn2g11149' => 'nnu', 'Nn2g13389' => 'nnu', 'Nn4g25326' => 'nnu', 'Nn4g26290' => 'nnu', 'Nn5g29865' => 'nnu', 'Oeu004163.1' => 'oeu', 'Oeu006901.1' => 'oeu', 'Oeu010096.1' => 'oeu', 'Oeu024340.1' => 'oeu', 'Oeu048369.1' => 'oeu', 'Os01g0973000' => 'osa', 'Os03g0273800' => 'osa', 'Os03g0701200' => 'osa', 'Os03g0834050' => 'osa', 'Os07g0634400' => 'osa', 'Peaxi162Scf00092g01414' => 'pax', 'Peaxi162Scf00165g00818' => 'pax', 'Peaxi162Scf00309g00516' => 'pax', 'Peaxi162Scf00774g00218' => 'pax', 'PGR004G1824' => 'pgr', 'PGR004G2606' => 'pgr', 'PGR031G2716' => 'pgr', 'PGR102G2460' => 'pgr', 'PGR142G2599' => 'pgr', 'PGSC0003DMG400000843' => 'stu', 'PGSC0003DMG400008829' => 'stu', 'PGSC0003DMG400030418' => 'stu', 'PGSC0003DMG400031834' => 'stu', 'PGSC0003DMG401028300' => 'stu', 'PGSC0003DMG402028300' => 'stu', 'Phvul.001G219300' => 'pvu', 'Phvul.007G056000' => 'pvu', 'Phvul.007G208000' => 'pvu', 'Phvul.008G119500' => 'pvu', 'Phvul.010G011200' => 'pvu', 'Phvul.010G014800' => 'pvu', 'Phvul.011G062900' => 'pvu', 'Phvul.L007043' => 'pvu', 'Potri.001G242300' => 'ptr', 'Potri.002G185300' => 'ptr', 'Potri.006G086900' => 'ptr', 'Potri.008G151700' => 'ptr', 'Potri.009G033500' => 'ptr', 'Potri.010G089300' => 'ptr', 'Potri.014G110800' => 'ptr', 'Pp3c27_8130' => 'ppa', 'Pp3c6_27410' => 'ppa', 'PRCOL_00001659' => 'pco', 'PRCOL_00001927' => 'pco', 'PRCOL_00003649' => 'pco', 'Prupe.1G011600' => 'ppe', 'Prupe.3G000800' => 'ppe', 'Prupe.3G001100' => 'ppe', 'Prupe.6G072700' => 'ppe', 'Prupe.6G072800' => 'ppe', 'Prupe.6G257300' => 'ppe', 'Prupe.8G033000' => 'ppe', 'Psat0s2633g0080' => 'psa', 'Psat0s3396g0080' => 'psa', 'Psat0s3396g0200' => 'psa', 'Psat3g139080' => 'psa', 'Psat5g285080' => 'psa', 'Psat6g157760' => 'psa', 'Psat6g208440' => 'psa', 'Psat7g215320' => 'psa', 'Psat7g215400' => 'psa', 'Psat7g235600' => 'psa', 'Psat7g235760' => 'psa', 'PSO063G4603' => 'pso', 'PSO210G0182' => 'pso', 'PSO210G0196' => 'pso', 'PSO339G0394' => 'pso', 'PSO339G4127' => 'pso', 'PSO513G0064' => 'pso', 'PSO761G0079' => 'pso', 'QL01p031003' => 'qlo', 'QL01p031078' => 'qlo', 'QL06p003004' => 'qlo', 'QL07p048731' => 'qlo', 'QL09p037427' => 'qlo', 'RcHm_v2.0_Chr3g0466361' => 'rch', 'RcHm_v2.0_Chr3g0485571' => 'rch', 'RcHm_v2.0_Chr4g0416551' => 'rch', 'RcHm_v2.0_Chr5g0065831' => 'rch', 'Rhsim01G0230500' => 'rsi', 'Rhsim05G0194000' => 'rsi', 'Rhsim08G0250400' => 'rsi', 'Sabra02G0131000' => 'sbr', 'Sabra06G0066300' => 'sbr', 'Sabra08G0115500' => 'sbr', 'Sabra09G0023900' => 'sbr', 'Sabra10G0054000' => 'sbr', 'Sabra14G0081500' => 'sbr', 'Sabra16G0147100' => 'sbr', 'SalBow2G2957' => 'sbo', 'SalBow4G3320' => 'sbo', 'SalBow8G1894' => 'sbo', 'Sc07g0007950' => 'sci', 'Sc12g0001360' => 'sci', 'Sc13g0004330' => 'sci', 'Sc20g0005010' => 'sci', 'Sed0000361' => 'sed', 'Sed0001706' => 'sed', 'Sed0002422' => 'sed', 'Sed0004029' => 'sed', 'Sed0004602' => 'sed', 'Sed0004943' => 'sed', 'Sed0008646' => 'sed', 'Sed0023313' => 'sed', 'Sed0024843' => 'sed', 'SEGI_00081' => 'sgi', 'SEGI_00947' => 'sgi', 'SEGI_04046' => 'sgi', 'SEGI_06880' => 'sgi', 'SEGI_09736' => 'sgi', 'SEGI_12741' => 'sgi', 'SEGI_14530' => 'sgi', 'SEGI_20705' => 'sgi', 'SEGI_26088' => 'sgi', 'SEGI_28323' => 'sgi', 'SEGI_33343' => 'sgi', 'SGA_v2.0_scaffold126G33775' => 'sas', 'SGA_v2.0_scaffold2G01337' => 'sas', 'SGA_v2.0_scaffold38G15006' => 'sas', 'SGA_v2.0_scaffold39G15264' => 'sas', 'SGA_v2.0_scaffold453G51880' => 'sas', 'SHI12696' => 'shi', 'SMO367G1096' => 'smo', 'Solyc01g068630.3' => 'sly', 'Solyc05g011880.3' => 'sly', 'Solyc06g076300.3' => 'sly', 'Solyc09g010940.4' => 'sly', 'Solyc09g075890.3' => 'sly', 'Sopen01g030560' => 'spe', 'Sopen05g006630' => 'spe', 'Sopen06g032720' => 'spe', 'Sopen09g005660' => 'spe', 'Sopen09g030690' => 'spe', 'Sp4g14540' => 'spa', 'Sp4g20030' => 'spa', 'Sp5g01320' => 'spa', 'Sp6g21170' => 'spa', 'Sp6g21180' => 'spa', 'Sp6g21190' => 'spa', 'Sp6g40220' => 'spa', 'TAR362G0122' => 'tar', 'TAR362G1338' => 'tar', 'TAR369G0590' => 'tar', 'TAR371G0824' => 'tar', 'TAR622G1429' => 'tar', 'TAR623G0734' => 'tar', 'TAR625G0441' => 'tar', 'TAR629G0976' => 'tar', 'TAR633G1195' => 'tar', 'TAR636G2660' => 'tar', 'THA.LOC104799440' => 'tha', 'THA.LOC104800966' => 'tha', 'THA.LOC104806559' => 'tha', 'THA.LOC104810765' => 'tha', 'THA.LOC104816266' => 'tha', 'THA.LOC104817419' => 'tha', 'THA.LOC104827021' => 'tha', 'Thecc.01G327400' => 'tca', 'Thecc.04G229200' => 'tca', 'Thecc.05G037400' => 'tca', 'Thecc.09G318600' => 'tca', 'Thecc.09G318700' => 'tca', 'Thhalv10006238m.g' => 'esa', 'Thhalv10014321m.g' => 'esa', 'Thhalv10014335m.g' => 'esa', 'Thhalv10015826m.g' => 'esa', 'Thhalv10017107m.g' => 'esa', 'Thhalv10017180m.g' => 'esa', 'Thhalv10029339m.g' => 'esa', 'TPR.G1699' => 'tpr', 'TPR.G23609' => 'tpr', 'TPR.G3081' => 'tpr', 'TPR.G40397' => 'tpr', 'TPR.G5522' => 'tpr', 'TPR.G5618' => 'tpr', 'TPR.G5626' => 'tpr', 'TWI09G1632' => 'twi', 'TWI23G1230' => 'twi', 'TWI53G1064' => 'twi', 'TWI59G0751' => 'twi', 'TWI74G0947' => 'twi', 'TWI77G0337' => 'twi', 'TWI79G1254' => 'twi', 'unitig_0.g2341' => 'ugi', 'unitig_26.g10006' => 'ugi', 'unitig_26.g10008' => 'ugi', 'unitig_26.g9192' => 'ugi', 'vmacro14547' => 'vma', 'vmacro15333' => 'vma', 'vmacro18743' => 'vma', 'vmacro20166' => 'vma', 'VMungo0331G0523' => 'vmu', 'VMungo0331G1202' => 'vmu', 'VMungo0720G1228' => 'vmu', 'VMungo0720G1514' => 'vmu', 'VMungo1080G0169' => 'vmu', 'VMungo1127G1475' => 'vmu', 'VMungo1383G1208' => 'vmu', 'VMungo1383G1698' => 'vmu', 'Zm00001eb012270' => 'zma', 'Zm00001eb054100' => 'zma', 'Zm00001eb063350' => 'zma', 'Zm00001eb328560' => 'zma', 'Zm00001eb342820' => 'zma', 'Zm00001eb362210' => 'zma', 'Zm00001eb397730' => 'zma', 'Zm00001eb399750' => 'zma' ) $gf_id = 'HOM05D000959' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000959' ) $data_identifier = 'HOM05D000959' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 5, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 5, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 10, 'mbi' => (int) 3, 'mco' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 2, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 3, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 11, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399750' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000959', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '622', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p07100' => 'bna', 'A03p11720' => 'bna', 'A05p08300' => 'bna', 'A05p13380' => 'bna', 'A09p54130' => 'bna', 'A10p16690' => 'bna', 'A10p16700' => 'bna', 'A10p33390' => 'bna', 'Aa31LG10G16020' => 'aar', 'Aa31LG1G11810' => 'aar', 'Aa31LG1G11830' => 'aar', 'Aa31LG1G22510' => 'aar', 'Aa31LG5G4890' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5793' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2310' => 'aag', 'Actinidia08499' => 'ach', 'Actinidia11262' => 'ach', 'Actinidia23926' => 'ach', 'Actinidia34420' => 'ach', 'Actinidia36970' => 'ach', 'Ah.02g111220' => 'amhyb', 'Ah.15g097750' => 'amhyb', 'AL4G27500' => 'aly', 'AL6G11470' => 'aly', 'AL8G35950' => 'aly', 'AL8G35960' => 'aly', 'AL8G35970' => 'aly', 'Aqoxy1G00912' => 'aox', 'Aqoxy2G02253' => 'aox', 'Aqoxy2G02411' => 'aox', 'Aqoxy5G00485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BZ66YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K8ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM4FUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6BF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HFV7XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25JBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0YNNV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MAKK6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P70IT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP2Z6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V61LZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YWP64R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3S9AI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7PGHH' => 'arhy', 'AT2G32150' => 'ath', 'AT3G62040' => 'ath', 'AT5G02230' => 'ath', 'AT5G59480' => 'ath', 'AT5G59490' => 'ath', 'ATR0332G060' => 'atr', 'ATR0559G190' => 'atr', 'ATR0693G294' => 'atr', 'Atru.chr3.3975' => 'acertr', 'Atru.chr3.3976' => 'acertr', 'Atru.chr3.3977' => 'acertr', 'Atru.chr4.2498' => 'acertr', 'Atru.chr5.838' => 'acertr', 'Atru.chr8.1990' => 'acertr', 'Atru.chr8.1991' => 'acertr', 'Atru.chr8.1992' => 'acertr', 'AUR62001759' => 'cqu', 'AUR62009545' => 'cqu', 'AUR62010474' => 'cqu', 'AUR62025820' => 'cqu', 'AUR62030422' => 'cqu', 'AUR62033605' => 'cqu', 'AUR62038615' => 'cqu', 'AUR62041347' => 'cqu', 'BcaB01g04574' => 'bca', 'BcaB02g09263' => 'bca', 'BcaB02g10453' => 'bca', 'BcaB05g22513' => 'bca', 'BcaB08g36253' => 'bca', 'BcaB08g36254' => 'bca', 'BcaC01g06519' => 'bca', 'BcaC02g11889' => 'bca', 'BcaC03g14010' => 'bca', 'BcaC03g18439' => 'bca', 'BcaC04g19765' => 'bca', 'BcaC09g48432' => 'bca', 'BcaNung07302' => 'bca', 'BolC2t06040H' => 'bol', 'BolC2t07346H' => 'bol', 'BolC3t13817H' => 'bol', 'BolC4t22625H' => 'bol', 'BolC4t23297H' => 'bol', 'BolC8t51278H' => 'bol', 'BolC9t58050H' => 'bol', 'BolC9t58051H' => 'bol', 'BolC9t60163H' => 'bol', 'BraA02t04712Z' => 'bra', 'BraA02t05791Z' => 'bra', 'BraA03t10483Z' => 'bra', 'BraA05t19795Z' => 'bra', 'BraA05t20276Z' => 'bra', 'BraA09t40827Z' => 'bra', 'BraA10t43750Z' => 'bra', 'BraA10t43751Z' => 'bra', 'BraA10t45370Z' => 'bra', 'C02p00400' => 'bna', 'C02p12460' => 'bna', 'C03p13680' => 'bna', 'C04p10270' => 'bna', 'C04p17500' => 'bna', 'C08p37010' => 'bna', 'C09p51880' => 'bna', 'C09p51890' => 'bna', 'C09p74300' => 'bna', 'CAN.G179.26' => 'can', 'CAN.G3384.1' => 'can', 'CAN.G394.68' => 'can', 'CAN.G907.13' => 'can', 'CANSAT11G0012' => 'cansat', 'CANSAT25G1586' => 'cansat', 'CANSAT35G0735' => 'cansat', 'CANSAT54G0556' => 'cansat', 'CANSAT64G0356' => 'cansat', 'CANSAT78G2042' => 'cansat', 'CARHR125920' => 'chi', 'CARHR131910' => 'chi', 'CARHR172390' => 'chi', 'CARHR211140' => 'chi', 'CARHR285850' => 'chi', 'CARHR285860' => 'chi', 'Carub.0004s1347' => 'cru', 'Carub.0004s1960' => 'cru', 'Carub.0005s2880' => 'cru', 'Carub.0006s0107' => 'cru', 'Carub.0008s2015' => 'cru', 'Carub.0008s2016' => 'cru', 'Carub.0008s2017' => 'cru', 'Ca_01315_v3' => 'car', 'Ca_05063_v3' => 'car', 'Ca_10231_v3' => 'car', 'Ca_10913_v3' => 'car', 'Ca_19156_v3' => 'car', 'Ca_23644_v3' => 'car', 'Ca_26735_v3' => 'car', 'Cc01_g13130' => 'ccan', 'Cc02_g21690' => 'ccan', 'Cc03_g03600' => 'ccan', 'Cc06_g02510' => 'ccan', 'CDE02G1265' => 'cde', 'CDE05G0415' => 'cde', 'CDE08G1082' => 'cde', 'Cfa005780' => 'cfa', 'Cfa011522' => 'cfa', 'Cfa011523' => 'cfa', 'Cfa015627' => 'cfa', 'Cfa017359' => 'cfa', 'Ciclev10005687m.g' => 'ccl', 'Ciclev10012173m.g' => 'ccl', 'Ciclev10021621m.g' => 'ccl', 'Ciclev10028968m.g' => 'ccl', 'Ciclev10029907m.g' => 'ccl', 'CiPaw.01G164800' => 'cil', 'CiPaw.07G083700' => 'cil', 'CiPaw.07G127000' => 'cil', 'CiPaw.07G136900' => 'cil', 'CiPaw.08G081700' => 'cil', 'CiPaw.09G194600' => 'cil', 'CiPaw.10G146500' => 'cil', 'CiPaw.13G091500' => 'cil', 'CiPaw.13G091600' => 'cil', 'ClCG00G003390' => 'cla', 'ClCG01G007220' => 'cla', 'ClCG03G001370' => 'cla', 'ClCG04G008100' => 'cla', 'ClCG06G006110' => 'cla', 'ClCG06G006130' => 'cla', 'ClCG10G021210' => 'cla', 'COL.COLO4_07648' => 'col', 'COL.COLO4_07650' => 'col', 'COL.COLO4_07651' => 'col', 'COL.COLO4_14780' => 'col', 'COL.COLO4_18546' => 'col', 'COL.COLO4_18547' => 'col', 'COL.COLO4_23103' => 'col', 'COL.COLO4_30419' => 'col', 'COL.COLO4_34232' => 'col', 'Cpa.g.sc169.20' => 'cpa', 'Cpa.g.sc57.45' => 'cpa', 'Cpa.g.sc58.124' => 'cpa', 'Cpa.g.sc58.125' => 'cpa', 'Cpa.g.sc81.118' => 'cpa', 'Cpa.g.sc81.119' => 'cpa', 'Cre12.g524700' => 'cre', 'CsaV3_1G034430' => 'csa', 'CsaV3_1G034440' => 'csa', 'CsaV3_1G034450' => 'csa', 'CsaV3_3G034830' => 'csa', 'CsaV3_4G025090' => 'csa', 'CsaV3_5G018660' => 'csa', 'CsaV3_6G038160' => 'csa', 'CSS0003447' => 'camsi', 'CSS0017840' => 'camsi', 'CSS0019260' => 'camsi', 'CSS0040375' => 'camsi', 'CSS0042533' => 'camsi', 'DCAR_005960' => 'dca', 'DCAR_012104' => 'dca', 'DCAR_012105' => 'dca', 'DCAR_012293' => 'dca', 'DCAR_015632' => 'dca', 'DCAR_024602' => 'dca', 'DCAR_028752' => 'dca', 'Dinv06261' => 'din', 'Dinv13982' => 'din', 'Dinv17029' => 'din', 'Dinv18463' => 'din', 'Dinv33181' => 'din', 'Dinv35585' => 'din', 'Dinv37161' => 'din', 'Dinv42977' => 'din', 'Dinv43122' => 'din', 'Dinv44517' => 'din', 'Duzib093G0256' => 'dzi', 'Duzib106G1254' => 'dzi', 'Duzib128G1789' => 'dzi', 'Duzib133G0633' => 'dzi', 'Duzib138G0510' => 'dzi', 'Duzib150G1084' => 'dzi', 'Duzib168G0488' => 'dzi', 'Duzib168G1523' => 'dzi', 'Duzib170G0133' => 'dzi', 'ECA234G1433' => 'eca', 'ECA236G1432' => 'eca', 'ECA236G2256' => 'eca', 'ECA236G2365' => 'eca', 'ECA236G4830' => 'eca', 'ECA248G1505' => 'eca', 'EL10Ac3g06431' => 'bvu', 'EL10Ac5g12577' => 'bvu', 'EL10Ac6g13533' => 'bvu', 'EL10Ac7g16045' => 'bvu', 'Eucgr.A01281' => 'egr', 'Eucgr.B02326' => 'egr', 'Eucgr.H03532' => 'egr', 'Eucgr.K00553' => 'egr', 'Eucgr.K03116' => 'egr', 'FAN02G3963' => 'fan', 'FAN05G0438' => 'fan', 'FAN09G2434' => 'fan', 'FAN12G3984' => 'fan', 'FAN14G0798' => 'fan', 'FAN17G0652' => 'fan', 'FAN19G1988' => 'fan', 'FAN22G0632' => 'fan', 'FAN23G0387' => 'fan', 'FAN26G1323' => 'fan', 'FAN28G0666' => 'fan', 'FvH4_1g26080' => 'fve', 'FvH4_3g36780' => 'fve', 'FvH4_4g15270' => 'fve', 'FvH4_6g13490' => 'fve', 'Glyma.01G098700' => 'gma', 'Glyma.03G065900' => 'gma', 'Glyma.03G073754' => 'gma', 'Glyma.03G073758' => 'gma', 'Glyma.03G083200' => 'gma', 'Glyma.03G225500' => 'gma', 'Glyma.05G037766' => 'gma', 'Glyma.07G133500' => 'gma', 'Glyma.10G139400' => 'gma', 'Glyma.10G248900' => 'gma', 'Glyma.11G137800' => 'gma', 'Glyma.12G061300' => 'gma', 'Glyma.13G337900' => 'gma', 'Glyma.15G036600' => 'gma', 'Glyma.18G182800' => 'gma', 'Glyma.19G222500' => 'gma', 'Glyma.20G144800' => 'gma', 'Gohir.A01G222000' => 'ghi', 'Gohir.A03G044000' => 'ghi', 'Gohir.A03G044100' => 'ghi', 'Gohir.A04G083100' => 'ghi', 'Gohir.A07G127200' => 'ghi', 'Gohir.A07G132400' => 'ghi', 'Gohir.A08G000700' => 'ghi', 'Gohir.A11G327300' => 'ghi', 'Gohir.D01G211500' => 'ghi', 'Gohir.D03G123400' => 'ghi', 'Gohir.D03G123500' => 'ghi', 'Gohir.D04G121800' => 'ghi', 'Gohir.D07G131500' => 'ghi', 'Gohir.D07G136600' => 'ghi', 'Gohir.D08G011600' => 'ghi', 'Gohir.D11G346200' => 'ghi', 'Gorai.001G142800' => 'gra', 'Gorai.001G148700' => 'gra', 'Gorai.002G257300' => 'gra', 'Gorai.003G130000' => 'gra', 'Gorai.003G130100' => 'gra', 'Gorai.004G005300' => 'gra', 'Gorai.007G376500' => 'gra', 'Gorai.012G104700' => 'gra', 'GSVIVG01017946001' => 'vvi', 'GSVIVG01024928001' => 'vvi', 'GSVIVG01028227001' => 'vvi', 'GSVIVG01034151001' => 'vvi', 'HanXRQChr05g0135031' => 'han', 'HanXRQChr05g0135041' => 'han', 'HanXRQChr05g0140021' => 'han', 'HanXRQChr06g0178981' => 'han', 'HanXRQChr07g0188251' => 'han', 'HanXRQChr08g0235311' => 'han', 'HanXRQChr09g0271011' => 'han', 'HanXRQChr10g0293321' => 'han', 'HanXRQChr13g0388171' => 'han', 'Haze_00916' => 'cav', 'Haze_05063' => 'cav', 'Haze_20814' => 'cav', 'Haze_24128' => 'cav', 'Hma1.2p1_0745F.1_g212010' => 'hma', 'Hma1.2p1_0757F.1_g213260' => 'hma', 'Hma1.2p1_0936F.1_g238840' => 'hma', 'Hma1.2p1_1735F.1_g299890' => 'hma', 'Hma1.2p1_1861F.1_g305685' => 'hma', 'HPP92_003397' => 'vpl', 'HPP92_012597' => 'vpl', 'HPP92_015520' => 'vpl', 'HPP92_015539' => 'vpl', 'HPP92_020373' => 'vpl', 'Hund04938' => 'sun', 'Hund10677' => 'sun', 'Hund11033' => 'sun', 'Hund12155' => 'sun', 'Lalb_Chr01g0022551' => 'lal', 'Lalb_Chr03g0042341' => 'lal', 'Lalb_Chr07g0192931' => 'lal', 'Lalb_Chr12g0209551' => 'lal', 'Lalb_Chr19g0125251' => 'lal', 'Lalb_Chr19g0137891' => 'lal', 'Lalb_Chr21g0304641' => 'lal', 'Lalb_Chr21g0309881' => 'lal', 'Lj1A5T12' => 'lonja', 'Lj1C148G10' => 'lonja', 'Lj2A93T83' => 'lonja', 'Lj3A738G68' => 'lonja', 'Lj3C966T1' => 'lonja', 'Lj3g0018958' => 'lja', 'Lj3g0021831' => 'lja', 'Lj3g0025443' => 'lja', 'Lj4g0026809' => 'lja', 'Lj5g0012558' => 'lja', 'Lj5g0021586' => 'lja', 'Lsat_1_v5_gn_5_156840' => 'lsa', 'Lsat_1_v5_gn_8_73460' => 'lsa', 'Lsat_1_v5_gn_8_73481' => 'lsa', 'Lsat_1_v5_gn_9_31601' => 'lsa', 'Lsat_1_v5_gn_9_77320' => 'lsa', 'Manes.01G171300' => 'mes', 'Manes.01G171400' => 'mes', 'Manes.01G236100' => 'mes', 'Manes.02G130500' => 'mes', 'Manes.02G130600' => 'mes', 'Manes.03G180200' => 'mes', 'Manes.05G007000' => 'mes', 'Manes.08G084400' => 'mes', 'Manes.09G092600' => 'mes', 'Manes.15G027900' => 'mes', 'MBI04_g40948_MAGBIO' => 'mbi', 'MBI14_g12123_MAGBIO' => 'mbi', 'MBI18_g28915_MAGBIO' => 'mbi', 'MCO09G053' => 'mco', 'MCO11G782' => 'mco', 'MCO15G215' => 'mco', 'MD03G1088500' => 'mdo', 'MD03G1088600' => 'mdo', 'MD04G1130800' => 'mdo', 'MD09G1291700' => 'mdo', 'MD11G1097500' => 'mdo', 'MD11G1097600' => 'mdo', 'MD12G1143900' => 'mdo', 'MD13G1191400' => 'mdo', 'MD16G1191500' => 'mdo', 'Medtr1g085570' => 'mtr', 'Medtr1g104610' => 'mtr', 'Medtr2g097520' => 'mtr', 'Medtr4g021800' => 'mtr', 'Medtr4g021825' => 'mtr', 'Medtr4g064270' => 'mtr', 'Medtr4g064380' => 'mtr', 'Medtr7g062150' => 'mtr', 'MELO3C003138.2' => 'cme', 'MELO3C005187.2' => 'cme', 'MELO3C009252.2' => 'cme', 'MELO3C014481.2' => 'cme', 'MELO3C020616.2' => 'cme', 'MELO3C020617.2' => 'cme', 'MELO3C020618.2' => 'cme', 'Migut.G00328' => 'egut', 'Migut.J00320' => 'egut', 'Migut.L01000' => 'egut', 'Migut.L01953' => 'egut', 'MSTRG.10253' => 'ama', 'MSTRG.19077' => 'ama', 'MSTRG.26780' => 'ama', 'MSTRG.4023' => 'ama', 'MSTRG.5655' => 'ama', 'MSTRG.9992' => 'ama', 'Nitab4.5_0000043g0310' => 'nta', 'Nitab4.5_0000463g0080' => 'nta', 'Nitab4.5_0000705g0170' => 'nta', 'Nitab4.5_0001326g0060' => 'nta', 'Nitab4.5_0001628g0030' => 'nta', 'Nitab4.5_0002103g0110' => 'nta', 'Nitab4.5_0002946g0030' => 'nta', 'Nitab4.5_0004639g0030' => 'nta', 'Nn2g11149' => 'nnu', 'Nn2g13389' => 'nnu', 'Nn4g25326' => 'nnu', 'Nn4g26290' => 'nnu', 'Nn5g29865' => 'nnu', 'Oeu004163.1' => 'oeu', 'Oeu006901.1' => 'oeu', 'Oeu010096.1' => 'oeu', 'Oeu024340.1' => 'oeu', 'Oeu048369.1' => 'oeu', 'Os01g0973000' => 'osa', 'Os03g0273800' => 'osa', 'Os03g0701200' => 'osa', 'Os03g0834050' => 'osa', 'Os07g0634400' => 'osa', 'Peaxi162Scf00092g01414' => 'pax', 'Peaxi162Scf00165g00818' => 'pax', 'Peaxi162Scf00309g00516' => 'pax', 'Peaxi162Scf00774g00218' => 'pax', 'PGR004G1824' => 'pgr', 'PGR004G2606' => 'pgr', 'PGR031G2716' => 'pgr', 'PGR102G2460' => 'pgr', 'PGR142G2599' => 'pgr', 'PGSC0003DMG400000843' => 'stu', 'PGSC0003DMG400008829' => 'stu', 'PGSC0003DMG400030418' => 'stu', 'PGSC0003DMG400031834' => 'stu', 'PGSC0003DMG401028300' => 'stu', 'PGSC0003DMG402028300' => 'stu', 'Phvul.001G219300' => 'pvu', 'Phvul.007G056000' => 'pvu', 'Phvul.007G208000' => 'pvu', 'Phvul.008G119500' => 'pvu', 'Phvul.010G011200' => 'pvu', 'Phvul.010G014800' => 'pvu', 'Phvul.011G062900' => 'pvu', 'Phvul.L007043' => 'pvu', 'Potri.001G242300' => 'ptr', 'Potri.002G185300' => 'ptr', 'Potri.006G086900' => 'ptr', 'Potri.008G151700' => 'ptr', 'Potri.009G033500' => 'ptr', 'Potri.010G089300' => 'ptr', 'Potri.014G110800' => 'ptr', 'Pp3c27_8130' => 'ppa', 'Pp3c6_27410' => 'ppa', 'PRCOL_00001659' => 'pco', 'PRCOL_00001927' => 'pco', 'PRCOL_00003649' => 'pco', 'Prupe.1G011600' => 'ppe', 'Prupe.3G000800' => 'ppe', 'Prupe.3G001100' => 'ppe', 'Prupe.6G072700' => 'ppe', 'Prupe.6G072800' => 'ppe', 'Prupe.6G257300' => 'ppe', 'Prupe.8G033000' => 'ppe', 'Psat0s2633g0080' => 'psa', 'Psat0s3396g0080' => 'psa', 'Psat0s3396g0200' => 'psa', 'Psat3g139080' => 'psa', 'Psat5g285080' => 'psa', 'Psat6g157760' => 'psa', 'Psat6g208440' => 'psa', 'Psat7g215320' => 'psa', 'Psat7g215400' => 'psa', 'Psat7g235600' => 'psa', 'Psat7g235760' => 'psa', 'PSO063G4603' => 'pso', 'PSO210G0182' => 'pso', 'PSO210G0196' => 'pso', 'PSO339G0394' => 'pso', 'PSO339G4127' => 'pso', 'PSO513G0064' => 'pso', 'PSO761G0079' => 'pso', 'QL01p031003' => 'qlo', 'QL01p031078' => 'qlo', 'QL06p003004' => 'qlo', 'QL07p048731' => 'qlo', 'QL09p037427' => 'qlo', 'RcHm_v2.0_Chr3g0466361' => 'rch', 'RcHm_v2.0_Chr3g0485571' => 'rch', 'RcHm_v2.0_Chr4g0416551' => 'rch', 'RcHm_v2.0_Chr5g0065831' => 'rch', 'Rhsim01G0230500' => 'rsi', 'Rhsim05G0194000' => 'rsi', 'Rhsim08G0250400' => 'rsi', 'Sabra02G0131000' => 'sbr', 'Sabra06G0066300' => 'sbr', 'Sabra08G0115500' => 'sbr', 'Sabra09G0023900' => 'sbr', 'Sabra10G0054000' => 'sbr', 'Sabra14G0081500' => 'sbr', 'Sabra16G0147100' => 'sbr', 'SalBow2G2957' => 'sbo', 'SalBow4G3320' => 'sbo', 'SalBow8G1894' => 'sbo', 'Sc07g0007950' => 'sci', 'Sc12g0001360' => 'sci', 'Sc13g0004330' => 'sci', 'Sc20g0005010' => 'sci', 'Sed0000361' => 'sed', 'Sed0001706' => 'sed', 'Sed0002422' => 'sed', 'Sed0004029' => 'sed', 'Sed0004602' => 'sed', 'Sed0004943' => 'sed', 'Sed0008646' => 'sed', 'Sed0023313' => 'sed', 'Sed0024843' => 'sed', 'SEGI_00081' => 'sgi', 'SEGI_00947' => 'sgi', 'SEGI_04046' => 'sgi', 'SEGI_06880' => 'sgi', 'SEGI_09736' => 'sgi', 'SEGI_12741' => 'sgi', 'SEGI_14530' => 'sgi', 'SEGI_20705' => 'sgi', 'SEGI_26088' => 'sgi', 'SEGI_28323' => 'sgi', 'SEGI_33343' => 'sgi', 'SGA_v2.0_scaffold126G33775' => 'sas', 'SGA_v2.0_scaffold2G01337' => 'sas', 'SGA_v2.0_scaffold38G15006' => 'sas', 'SGA_v2.0_scaffold39G15264' => 'sas', 'SGA_v2.0_scaffold453G51880' => 'sas', 'SHI12696' => 'shi', 'SMO367G1096' => 'smo', 'Solyc01g068630.3' => 'sly', 'Solyc05g011880.3' => 'sly', 'Solyc06g076300.3' => 'sly', 'Solyc09g010940.4' => 'sly', 'Solyc09g075890.3' => 'sly', 'Sopen01g030560' => 'spe', 'Sopen05g006630' => 'spe', 'Sopen06g032720' => 'spe', 'Sopen09g005660' => 'spe', 'Sopen09g030690' => 'spe', 'Sp4g14540' => 'spa', 'Sp4g20030' => 'spa', 'Sp5g01320' => 'spa', 'Sp6g21170' => 'spa', 'Sp6g21180' => 'spa', 'Sp6g21190' => 'spa', 'Sp6g40220' => 'spa', 'TAR362G0122' => 'tar', 'TAR362G1338' => 'tar', 'TAR369G0590' => 'tar', 'TAR371G0824' => 'tar', 'TAR622G1429' => 'tar', 'TAR623G0734' => 'tar', 'TAR625G0441' => 'tar', 'TAR629G0976' => 'tar', 'TAR633G1195' => 'tar', 'TAR636G2660' => 'tar', 'THA.LOC104799440' => 'tha', 'THA.LOC104800966' => 'tha', 'THA.LOC104806559' => 'tha', 'THA.LOC104810765' => 'tha', 'THA.LOC104816266' => 'tha', 'THA.LOC104817419' => 'tha', 'THA.LOC104827021' => 'tha', 'Thecc.01G327400' => 'tca', 'Thecc.04G229200' => 'tca', 'Thecc.05G037400' => 'tca', 'Thecc.09G318600' => 'tca', 'Thecc.09G318700' => 'tca', 'Thhalv10006238m.g' => 'esa', 'Thhalv10014321m.g' => 'esa', 'Thhalv10014335m.g' => 'esa', 'Thhalv10015826m.g' => 'esa', 'Thhalv10017107m.g' => 'esa', 'Thhalv10017180m.g' => 'esa', 'Thhalv10029339m.g' => 'esa', 'TPR.G1699' => 'tpr', 'TPR.G23609' => 'tpr', 'TPR.G3081' => 'tpr', 'TPR.G40397' => 'tpr', 'TPR.G5522' => 'tpr', 'TPR.G5618' => 'tpr', 'TPR.G5626' => 'tpr', 'TWI09G1632' => 'twi', 'TWI23G1230' => 'twi', 'TWI53G1064' => 'twi', 'TWI59G0751' => 'twi', 'TWI74G0947' => 'twi', 'TWI77G0337' => 'twi', 'TWI79G1254' => 'twi', 'unitig_0.g2341' => 'ugi', 'unitig_26.g10006' => 'ugi', 'unitig_26.g10008' => 'ugi', 'unitig_26.g9192' => 'ugi', 'vmacro14547' => 'vma', 'vmacro15333' => 'vma', 'vmacro18743' => 'vma', 'vmacro20166' => 'vma', 'VMungo0331G0523' => 'vmu', 'VMungo0331G1202' => 'vmu', 'VMungo0720G1228' => 'vmu', 'VMungo0720G1514' => 'vmu', 'VMungo1080G0169' => 'vmu', 'VMungo1127G1475' => 'vmu', 'VMungo1383G1208' => 'vmu', 'VMungo1383G1698' => 'vmu', 'Zm00001eb012270' => 'zma', 'Zm00001eb054100' => 'zma', 'Zm00001eb063350' => 'zma', 'Zm00001eb328560' => 'zma', 'Zm00001eb342820' => 'zma', 'Zm00001eb362210' => 'zma', 'Zm00001eb397730' => 'zma', 'Zm00001eb399750' => 'zma' ), 'gf_id' => 'HOM05D000959', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000959' ), 'data_identifier' => 'HOM05D000959', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000959', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '622', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p07100' => 'bna', 'A03p11720' => 'bna', 'A05p08300' => 'bna', 'A05p13380' => 'bna', 'A09p54130' => 'bna', 'A10p16690' => 'bna', 'A10p16700' => 'bna', 'A10p33390' => 'bna', 'Aa31LG10G16020' => 'aar', 'Aa31LG1G11810' => 'aar', 'Aa31LG1G11830' => 'aar', 'Aa31LG1G22510' => 'aar', 'Aa31LG5G4890' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5793' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2310' => 'aag', 'Actinidia08499' => 'ach', 'Actinidia11262' => 'ach', 'Actinidia23926' => 'ach', 'Actinidia34420' => 'ach', 'Actinidia36970' => 'ach', 'Ah.02g111220' => 'amhyb', 'Ah.15g097750' => 'amhyb', 'AL4G27500' => 'aly', 'AL6G11470' => 'aly', 'AL8G35950' => 'aly', 'AL8G35960' => 'aly', 'AL8G35970' => 'aly', 'Aqoxy1G00912' => 'aox', 'Aqoxy2G02253' => 'aox', 'Aqoxy2G02411' => 'aox', 'Aqoxy5G00485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BZ66YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K8ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM4FUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6BF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HFV7XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25JBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0YNNV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MAKK6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P70IT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP2Z6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V61LZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YWP64R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3S9AI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7PGHH' => 'arhy', 'AT2G32150' => 'ath', 'AT3G62040' => 'ath', 'AT5G02230' => 'ath', 'AT5G59480' => 'ath', 'AT5G59490' => 'ath', 'ATR0332G060' => 'atr', 'ATR0559G190' => 'atr', 'ATR0693G294' => 'atr', 'Atru.chr3.3975' => 'acertr', 'Atru.chr3.3976' => 'acertr', 'Atru.chr3.3977' => 'acertr', 'Atru.chr4.2498' => 'acertr', 'Atru.chr5.838' => 'acertr', 'Atru.chr8.1990' => 'acertr', 'Atru.chr8.1991' => 'acertr', 'Atru.chr8.1992' => 'acertr', 'AUR62001759' => 'cqu', 'AUR62009545' => 'cqu', 'AUR62010474' => 'cqu', 'AUR62025820' => 'cqu', 'AUR62030422' => 'cqu', 'AUR62033605' => 'cqu', 'AUR62038615' => 'cqu', 'AUR62041347' => 'cqu', 'BcaB01g04574' => 'bca', 'BcaB02g09263' => 'bca', 'BcaB02g10453' => 'bca', 'BcaB05g22513' => 'bca', 'BcaB08g36253' => 'bca', 'BcaB08g36254' => 'bca', 'BcaC01g06519' => 'bca', 'BcaC02g11889' => 'bca', 'BcaC03g14010' => 'bca', 'BcaC03g18439' => 'bca', 'BcaC04g19765' => 'bca', 'BcaC09g48432' => 'bca', 'BcaNung07302' => 'bca', 'BolC2t06040H' => 'bol', 'BolC2t07346H' => 'bol', 'BolC3t13817H' => 'bol', 'BolC4t22625H' => 'bol', 'BolC4t23297H' => 'bol', 'BolC8t51278H' => 'bol', 'BolC9t58050H' => 'bol', 'BolC9t58051H' => 'bol', 'BolC9t60163H' => 'bol', 'BraA02t04712Z' => 'bra', 'BraA02t05791Z' => 'bra', 'BraA03t10483Z' => 'bra', 'BraA05t19795Z' => 'bra', 'BraA05t20276Z' => 'bra', 'BraA09t40827Z' => 'bra', 'BraA10t43750Z' => 'bra', 'BraA10t43751Z' => 'bra', 'BraA10t45370Z' => 'bra', 'C02p00400' => 'bna', 'C02p12460' => 'bna', 'C03p13680' => 'bna', 'C04p10270' => 'bna', 'C04p17500' => 'bna', 'C08p37010' => 'bna', 'C09p51880' => 'bna', 'C09p51890' => 'bna', 'C09p74300' => 'bna', 'CAN.G179.26' => 'can', 'CAN.G3384.1' => 'can', 'CAN.G394.68' => 'can', 'CAN.G907.13' => 'can', 'CANSAT11G0012' => 'cansat', 'CANSAT25G1586' => 'cansat', 'CANSAT35G0735' => 'cansat', 'CANSAT54G0556' => 'cansat', 'CANSAT64G0356' => 'cansat', 'CANSAT78G2042' => 'cansat', 'CARHR125920' => 'chi', 'CARHR131910' => 'chi', 'CARHR172390' => 'chi', 'CARHR211140' => 'chi', 'CARHR285850' => 'chi', 'CARHR285860' => 'chi', 'Carub.0004s1347' => 'cru', 'Carub.0004s1960' => 'cru', 'Carub.0005s2880' => 'cru', 'Carub.0006s0107' => 'cru', 'Carub.0008s2015' => 'cru', 'Carub.0008s2016' => 'cru', 'Carub.0008s2017' => 'cru', 'Ca_01315_v3' => 'car', 'Ca_05063_v3' => 'car', 'Ca_10231_v3' => 'car', 'Ca_10913_v3' => 'car', 'Ca_19156_v3' => 'car', 'Ca_23644_v3' => 'car', 'Ca_26735_v3' => 'car', 'Cc01_g13130' => 'ccan', 'Cc02_g21690' => 'ccan', 'Cc03_g03600' => 'ccan', 'Cc06_g02510' => 'ccan', 'CDE02G1265' => 'cde', 'CDE05G0415' => 'cde', 'CDE08G1082' => 'cde', 'Cfa005780' => 'cfa', 'Cfa011522' => 'cfa', 'Cfa011523' => 'cfa', 'Cfa015627' => 'cfa', 'Cfa017359' => 'cfa', 'Ciclev10005687m.g' => 'ccl', 'Ciclev10012173m.g' => 'ccl', 'Ciclev10021621m.g' => 'ccl', 'Ciclev10028968m.g' => 'ccl', 'Ciclev10029907m.g' => 'ccl', 'CiPaw.01G164800' => 'cil', 'CiPaw.07G083700' => 'cil', 'CiPaw.07G127000' => 'cil', 'CiPaw.07G136900' => 'cil', 'CiPaw.08G081700' => 'cil', 'CiPaw.09G194600' => 'cil', 'CiPaw.10G146500' => 'cil', 'CiPaw.13G091500' => 'cil', 'CiPaw.13G091600' => 'cil', 'ClCG00G003390' => 'cla', 'ClCG01G007220' => 'cla', 'ClCG03G001370' => 'cla', 'ClCG04G008100' => 'cla', 'ClCG06G006110' => 'cla', 'ClCG06G006130' => 'cla', 'ClCG10G021210' => 'cla', 'COL.COLO4_07648' => 'col', 'COL.COLO4_07650' => 'col', 'COL.COLO4_07651' => 'col', 'COL.COLO4_14780' => 'col', 'COL.COLO4_18546' => 'col', 'COL.COLO4_18547' => 'col', 'COL.COLO4_23103' => 'col', 'COL.COLO4_30419' => 'col', 'COL.COLO4_34232' => 'col', 'Cpa.g.sc169.20' => 'cpa', 'Cpa.g.sc57.45' => 'cpa', 'Cpa.g.sc58.124' => 'cpa', 'Cpa.g.sc58.125' => 'cpa', 'Cpa.g.sc81.118' => 'cpa', 'Cpa.g.sc81.119' => 'cpa', 'Cre12.g524700' => 'cre', 'CsaV3_1G034430' => 'csa', 'CsaV3_1G034440' => 'csa', 'CsaV3_1G034450' => 'csa', 'CsaV3_3G034830' => 'csa', 'CsaV3_4G025090' => 'csa', 'CsaV3_5G018660' => 'csa', 'CsaV3_6G038160' => 'csa', 'CSS0003447' => 'camsi', 'CSS0017840' => 'camsi', 'CSS0019260' => 'camsi', 'CSS0040375' => 'camsi', 'CSS0042533' => 'camsi', 'DCAR_005960' => 'dca', 'DCAR_012104' => 'dca', 'DCAR_012105' => 'dca', 'DCAR_012293' => 'dca', 'DCAR_015632' => 'dca', 'DCAR_024602' => 'dca', 'DCAR_028752' => 'dca', 'Dinv06261' => 'din', 'Dinv13982' => 'din', 'Dinv17029' => 'din', 'Dinv18463' => 'din', 'Dinv33181' => 'din', 'Dinv35585' => 'din', 'Dinv37161' => 'din', 'Dinv42977' => 'din', 'Dinv43122' => 'din', 'Dinv44517' => 'din', 'Duzib093G0256' => 'dzi', 'Duzib106G1254' => 'dzi', 'Duzib128G1789' => 'dzi', 'Duzib133G0633' => 'dzi', 'Duzib138G0510' => 'dzi', 'Duzib150G1084' => 'dzi', 'Duzib168G0488' => 'dzi', 'Duzib168G1523' => 'dzi', 'Duzib170G0133' => 'dzi', 'ECA234G1433' => 'eca', 'ECA236G1432' => 'eca', 'ECA236G2256' => 'eca', 'ECA236G2365' => 'eca', 'ECA236G4830' => 'eca', 'ECA248G1505' => 'eca', 'EL10Ac3g06431' => 'bvu', 'EL10Ac5g12577' => 'bvu', 'EL10Ac6g13533' => 'bvu', 'EL10Ac7g16045' => 'bvu', 'Eucgr.A01281' => 'egr', 'Eucgr.B02326' => 'egr', 'Eucgr.H03532' => 'egr', 'Eucgr.K00553' => 'egr', 'Eucgr.K03116' => 'egr', 'FAN02G3963' => 'fan', 'FAN05G0438' => 'fan', 'FAN09G2434' => 'fan', 'FAN12G3984' => 'fan', 'FAN14G0798' => 'fan', 'FAN17G0652' => 'fan', 'FAN19G1988' => 'fan', 'FAN22G0632' => 'fan', 'FAN23G0387' => 'fan', 'FAN26G1323' => 'fan', 'FAN28G0666' => 'fan', 'FvH4_1g26080' => 'fve', 'FvH4_3g36780' => 'fve', 'FvH4_4g15270' => 'fve', 'FvH4_6g13490' => 'fve', 'Glyma.01G098700' => 'gma', 'Glyma.03G065900' => 'gma', 'Glyma.03G073754' => 'gma', 'Glyma.03G073758' => 'gma', 'Glyma.03G083200' => 'gma', 'Glyma.03G225500' => 'gma', 'Glyma.05G037766' => 'gma', 'Glyma.07G133500' => 'gma', 'Glyma.10G139400' => 'gma', 'Glyma.10G248900' => 'gma', 'Glyma.11G137800' => 'gma', 'Glyma.12G061300' => 'gma', 'Glyma.13G337900' => 'gma', 'Glyma.15G036600' => 'gma', 'Glyma.18G182800' => 'gma', 'Glyma.19G222500' => 'gma', 'Glyma.20G144800' => 'gma', 'Gohir.A01G222000' => 'ghi', 'Gohir.A03G044000' => 'ghi', 'Gohir.A03G044100' => 'ghi', 'Gohir.A04G083100' => 'ghi', 'Gohir.A07G127200' => 'ghi', 'Gohir.A07G132400' => 'ghi', 'Gohir.A08G000700' => 'ghi', 'Gohir.A11G327300' => 'ghi', 'Gohir.D01G211500' => 'ghi', 'Gohir.D03G123400' => 'ghi', 'Gohir.D03G123500' => 'ghi', 'Gohir.D04G121800' => 'ghi', 'Gohir.D07G131500' => 'ghi', 'Gohir.D07G136600' => 'ghi', 'Gohir.D08G011600' => 'ghi', 'Gohir.D11G346200' => 'ghi', 'Gorai.001G142800' => 'gra', 'Gorai.001G148700' => 'gra', 'Gorai.002G257300' => 'gra', 'Gorai.003G130000' => 'gra', 'Gorai.003G130100' => 'gra', 'Gorai.004G005300' => 'gra', 'Gorai.007G376500' => 'gra', 'Gorai.012G104700' => 'gra', 'GSVIVG01017946001' => 'vvi', 'GSVIVG01024928001' => 'vvi', 'GSVIVG01028227001' => 'vvi', 'GSVIVG01034151001' => 'vvi', 'HanXRQChr05g0135031' => 'han', 'HanXRQChr05g0135041' => 'han', 'HanXRQChr05g0140021' => 'han', 'HanXRQChr06g0178981' => 'han', 'HanXRQChr07g0188251' => 'han', 'HanXRQChr08g0235311' => 'han', 'HanXRQChr09g0271011' => 'han', 'HanXRQChr10g0293321' => 'han', 'HanXRQChr13g0388171' => 'han', 'Haze_00916' => 'cav', 'Haze_05063' => 'cav', 'Haze_20814' => 'cav', 'Haze_24128' => 'cav', 'Hma1.2p1_0745F.1_g212010' => 'hma', 'Hma1.2p1_0757F.1_g213260' => 'hma', 'Hma1.2p1_0936F.1_g238840' => 'hma', 'Hma1.2p1_1735F.1_g299890' => 'hma', 'Hma1.2p1_1861F.1_g305685' => 'hma', 'HPP92_003397' => 'vpl', 'HPP92_012597' => 'vpl', 'HPP92_015520' => 'vpl', 'HPP92_015539' => 'vpl', 'HPP92_020373' => 'vpl', 'Hund04938' => 'sun', 'Hund10677' => 'sun', 'Hund11033' => 'sun', 'Hund12155' => 'sun', 'Lalb_Chr01g0022551' => 'lal', 'Lalb_Chr03g0042341' => 'lal', 'Lalb_Chr07g0192931' => 'lal', 'Lalb_Chr12g0209551' => 'lal', 'Lalb_Chr19g0125251' => 'lal', 'Lalb_Chr19g0137891' => 'lal', 'Lalb_Chr21g0304641' => 'lal', 'Lalb_Chr21g0309881' => 'lal', 'Lj1A5T12' => 'lonja', 'Lj1C148G10' => 'lonja', 'Lj2A93T83' => 'lonja', 'Lj3A738G68' => 'lonja', 'Lj3C966T1' => 'lonja', 'Lj3g0018958' => 'lja', 'Lj3g0021831' => 'lja', 'Lj3g0025443' => 'lja', 'Lj4g0026809' => 'lja', 'Lj5g0012558' => 'lja', 'Lj5g0021586' => 'lja', 'Lsat_1_v5_gn_5_156840' => 'lsa', 'Lsat_1_v5_gn_8_73460' => 'lsa', 'Lsat_1_v5_gn_8_73481' => 'lsa', 'Lsat_1_v5_gn_9_31601' => 'lsa', 'Lsat_1_v5_gn_9_77320' => 'lsa', 'Manes.01G171300' => 'mes', 'Manes.01G171400' => 'mes', 'Manes.01G236100' => 'mes', 'Manes.02G130500' => 'mes', 'Manes.02G130600' => 'mes', 'Manes.03G180200' => 'mes', 'Manes.05G007000' => 'mes', 'Manes.08G084400' => 'mes', 'Manes.09G092600' => 'mes', 'Manes.15G027900' => 'mes', 'MBI04_g40948_MAGBIO' => 'mbi', 'MBI14_g12123_MAGBIO' => 'mbi', 'MBI18_g28915_MAGBIO' => 'mbi', 'MCO09G053' => 'mco', 'MCO11G782' => 'mco', 'MCO15G215' => 'mco', 'MD03G1088500' => 'mdo', 'MD03G1088600' => 'mdo', 'MD04G1130800' => 'mdo', 'MD09G1291700' => 'mdo', 'MD11G1097500' => 'mdo', 'MD11G1097600' => 'mdo', 'MD12G1143900' => 'mdo', 'MD13G1191400' => 'mdo', 'MD16G1191500' => 'mdo', 'Medtr1g085570' => 'mtr', 'Medtr1g104610' => 'mtr', 'Medtr2g097520' => 'mtr', 'Medtr4g021800' => 'mtr', 'Medtr4g021825' => 'mtr', 'Medtr4g064270' => 'mtr', 'Medtr4g064380' => 'mtr', 'Medtr7g062150' => 'mtr', 'MELO3C003138.2' => 'cme', 'MELO3C005187.2' => 'cme', 'MELO3C009252.2' => 'cme', 'MELO3C014481.2' => 'cme', 'MELO3C020616.2' => 'cme', 'MELO3C020617.2' => 'cme', 'MELO3C020618.2' => 'cme', 'Migut.G00328' => 'egut', 'Migut.J00320' => 'egut', 'Migut.L01000' => 'egut', 'Migut.L01953' => 'egut', 'MSTRG.10253' => 'ama', 'MSTRG.19077' => 'ama', 'MSTRG.26780' => 'ama', 'MSTRG.4023' => 'ama', 'MSTRG.5655' => 'ama', 'MSTRG.9992' => 'ama', 'Nitab4.5_0000043g0310' => 'nta', 'Nitab4.5_0000463g0080' => 'nta', 'Nitab4.5_0000705g0170' => 'nta', 'Nitab4.5_0001326g0060' => 'nta', 'Nitab4.5_0001628g0030' => 'nta', 'Nitab4.5_0002103g0110' => 'nta', 'Nitab4.5_0002946g0030' => 'nta', 'Nitab4.5_0004639g0030' => 'nta', 'Nn2g11149' => 'nnu', 'Nn2g13389' => 'nnu', 'Nn4g25326' => 'nnu', 'Nn4g26290' => 'nnu', 'Nn5g29865' => 'nnu', 'Oeu004163.1' => 'oeu', 'Oeu006901.1' => 'oeu', 'Oeu010096.1' => 'oeu', 'Oeu024340.1' => 'oeu', 'Oeu048369.1' => 'oeu', 'Os01g0973000' => 'osa', 'Os03g0273800' => 'osa', 'Os03g0701200' => 'osa', 'Os03g0834050' => 'osa', 'Os07g0634400' => 'osa', 'Peaxi162Scf00092g01414' => 'pax', 'Peaxi162Scf00165g00818' => 'pax', 'Peaxi162Scf00309g00516' => 'pax', 'Peaxi162Scf00774g00218' => 'pax', 'PGR004G1824' => 'pgr', 'PGR004G2606' => 'pgr', 'PGR031G2716' => 'pgr', 'PGR102G2460' => 'pgr', 'PGR142G2599' => 'pgr', 'PGSC0003DMG400000843' => 'stu', 'PGSC0003DMG400008829' => 'stu', 'PGSC0003DMG400030418' => 'stu', 'PGSC0003DMG400031834' => 'stu', 'PGSC0003DMG401028300' => 'stu', 'PGSC0003DMG402028300' => 'stu', 'Phvul.001G219300' => 'pvu', 'Phvul.007G056000' => 'pvu', 'Phvul.007G208000' => 'pvu', 'Phvul.008G119500' => 'pvu', 'Phvul.010G011200' => 'pvu', 'Phvul.010G014800' => 'pvu', 'Phvul.011G062900' => 'pvu', 'Phvul.L007043' => 'pvu', 'Potri.001G242300' => 'ptr', 'Potri.002G185300' => 'ptr', 'Potri.006G086900' => 'ptr', 'Potri.008G151700' => 'ptr', 'Potri.009G033500' => 'ptr', 'Potri.010G089300' => 'ptr', 'Potri.014G110800' => 'ptr', 'Pp3c27_8130' => 'ppa', 'Pp3c6_27410' => 'ppa', 'PRCOL_00001659' => 'pco', 'PRCOL_00001927' => 'pco', 'PRCOL_00003649' => 'pco', 'Prupe.1G011600' => 'ppe', 'Prupe.3G000800' => 'ppe', 'Prupe.3G001100' => 'ppe', 'Prupe.6G072700' => 'ppe', 'Prupe.6G072800' => 'ppe', 'Prupe.6G257300' => 'ppe', 'Prupe.8G033000' => 'ppe', 'Psat0s2633g0080' => 'psa', 'Psat0s3396g0080' => 'psa', 'Psat0s3396g0200' => 'psa', 'Psat3g139080' => 'psa', 'Psat5g285080' => 'psa', 'Psat6g157760' => 'psa', 'Psat6g208440' => 'psa', 'Psat7g215320' => 'psa', 'Psat7g215400' => 'psa', 'Psat7g235600' => 'psa', 'Psat7g235760' => 'psa', 'PSO063G4603' => 'pso', 'PSO210G0182' => 'pso', 'PSO210G0196' => 'pso', 'PSO339G0394' => 'pso', 'PSO339G4127' => 'pso', 'PSO513G0064' => 'pso', 'PSO761G0079' => 'pso', 'QL01p031003' => 'qlo', 'QL01p031078' => 'qlo', 'QL06p003004' => 'qlo', 'QL07p048731' => 'qlo', 'QL09p037427' => 'qlo', 'RcHm_v2.0_Chr3g0466361' => 'rch', 'RcHm_v2.0_Chr3g0485571' => 'rch', 'RcHm_v2.0_Chr4g0416551' => 'rch', 'RcHm_v2.0_Chr5g0065831' => 'rch', 'Rhsim01G0230500' => 'rsi', 'Rhsim05G0194000' => 'rsi', 'Rhsim08G0250400' => 'rsi', 'Sabra02G0131000' => 'sbr', 'Sabra06G0066300' => 'sbr', 'Sabra08G0115500' => 'sbr', 'Sabra09G0023900' => 'sbr', 'Sabra10G0054000' => 'sbr', 'Sabra14G0081500' => 'sbr', 'Sabra16G0147100' => 'sbr', 'SalBow2G2957' => 'sbo', 'SalBow4G3320' => 'sbo', 'SalBow8G1894' => 'sbo', 'Sc07g0007950' => 'sci', 'Sc12g0001360' => 'sci', 'Sc13g0004330' => 'sci', 'Sc20g0005010' => 'sci', 'Sed0000361' => 'sed', 'Sed0001706' => 'sed', 'Sed0002422' => 'sed', 'Sed0004029' => 'sed', 'Sed0004602' => 'sed', 'Sed0004943' => 'sed', 'Sed0008646' => 'sed', 'Sed0023313' => 'sed', 'Sed0024843' => 'sed', 'SEGI_00081' => 'sgi', 'SEGI_00947' => 'sgi', 'SEGI_04046' => 'sgi', 'SEGI_06880' => 'sgi', 'SEGI_09736' => 'sgi', 'SEGI_12741' => 'sgi', 'SEGI_14530' => 'sgi', 'SEGI_20705' => 'sgi', 'SEGI_26088' => 'sgi', 'SEGI_28323' => 'sgi', 'SEGI_33343' => 'sgi', 'SGA_v2.0_scaffold126G33775' => 'sas', 'SGA_v2.0_scaffold2G01337' => 'sas', 'SGA_v2.0_scaffold38G15006' => 'sas', 'SGA_v2.0_scaffold39G15264' => 'sas', 'SGA_v2.0_scaffold453G51880' => 'sas', 'SHI12696' => 'shi', 'SMO367G1096' => 'smo', 'Solyc01g068630.3' => 'sly', 'Solyc05g011880.3' => 'sly', 'Solyc06g076300.3' => 'sly', 'Solyc09g010940.4' => 'sly', 'Solyc09g075890.3' => 'sly', 'Sopen01g030560' => 'spe', 'Sopen05g006630' => 'spe', 'Sopen06g032720' => 'spe', 'Sopen09g005660' => 'spe', 'Sopen09g030690' => 'spe', 'Sp4g14540' => 'spa', 'Sp4g20030' => 'spa', 'Sp5g01320' => 'spa', 'Sp6g21170' => 'spa', 'Sp6g21180' => 'spa', 'Sp6g21190' => 'spa', 'Sp6g40220' => 'spa', 'TAR362G0122' => 'tar', 'TAR362G1338' => 'tar', 'TAR369G0590' => 'tar', 'TAR371G0824' => 'tar', 'TAR622G1429' => 'tar', 'TAR623G0734' => 'tar', 'TAR625G0441' => 'tar', 'TAR629G0976' => 'tar', 'TAR633G1195' => 'tar', 'TAR636G2660' => 'tar', 'THA.LOC104799440' => 'tha', 'THA.LOC104800966' => 'tha', 'THA.LOC104806559' => 'tha', 'THA.LOC104810765' => 'tha', 'THA.LOC104816266' => 'tha', 'THA.LOC104817419' => 'tha', 'THA.LOC104827021' => 'tha', 'Thecc.01G327400' => 'tca', 'Thecc.04G229200' => 'tca', 'Thecc.05G037400' => 'tca', 'Thecc.09G318600' => 'tca', 'Thecc.09G318700' => 'tca', 'Thhalv10006238m.g' => 'esa', 'Thhalv10014321m.g' => 'esa', 'Thhalv10014335m.g' => 'esa', 'Thhalv10015826m.g' => 'esa', 'Thhalv10017107m.g' => 'esa', 'Thhalv10017180m.g' => 'esa', 'Thhalv10029339m.g' => 'esa', 'TPR.G1699' => 'tpr', 'TPR.G23609' => 'tpr', 'TPR.G3081' => 'tpr', 'TPR.G40397' => 'tpr', 'TPR.G5522' => 'tpr', 'TPR.G5618' => 'tpr', 'TPR.G5626' => 'tpr', 'TWI09G1632' => 'twi', 'TWI23G1230' => 'twi', 'TWI53G1064' => 'twi', 'TWI59G0751' => 'twi', 'TWI74G0947' => 'twi', 'TWI77G0337' => 'twi', 'TWI79G1254' => 'twi', 'unitig_0.g2341' => 'ugi', 'unitig_26.g10006' => 'ugi', 'unitig_26.g10008' => 'ugi', 'unitig_26.g9192' => 'ugi', 'vmacro14547' => 'vma', 'vmacro15333' => 'vma', 'vmacro18743' => 'vma', 'vmacro20166' => 'vma', 'VMungo0331G0523' => 'vmu', 'VMungo0331G1202' => 'vmu', 'VMungo0720G1228' => 'vmu', 'VMungo0720G1514' => 'vmu', 'VMungo1080G0169' => 'vmu', 'VMungo1127G1475' => 'vmu', 'VMungo1383G1208' => 'vmu', 'VMungo1383G1698' => 'vmu', 'Zm00001eb012270' => 'zma', 'Zm00001eb054100' => 'zma', 'Zm00001eb063350' => 'zma', 'Zm00001eb328560' => 'zma', 'Zm00001eb342820' => 'zma', 'Zm00001eb362210' => 'zma', 'Zm00001eb397730' => 'zma', 'Zm00001eb399750' => 'zma' ) $gf_id = 'HOM05D000959' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000959' ) $data_identifier = 'HOM05D000959' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 5, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 5, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 10, 'mbi' => (int) 3, 'mco' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 2, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 3, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 11, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399750' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000959', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '622', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p07100' => 'bna', 'A03p11720' => 'bna', 'A05p08300' => 'bna', 'A05p13380' => 'bna', 'A09p54130' => 'bna', 'A10p16690' => 'bna', 'A10p16700' => 'bna', 'A10p33390' => 'bna', 'Aa31LG10G16020' => 'aar', 'Aa31LG1G11810' => 'aar', 'Aa31LG1G11830' => 'aar', 'Aa31LG1G22510' => 'aar', 'Aa31LG5G4890' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5793' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2310' => 'aag', 'Actinidia08499' => 'ach', 'Actinidia11262' => 'ach', 'Actinidia23926' => 'ach', 'Actinidia34420' => 'ach', 'Actinidia36970' => 'ach', 'Ah.02g111220' => 'amhyb', 'Ah.15g097750' => 'amhyb', 'AL4G27500' => 'aly', 'AL6G11470' => 'aly', 'AL8G35950' => 'aly', 'AL8G35960' => 'aly', 'AL8G35970' => 'aly', 'Aqoxy1G00912' => 'aox', 'Aqoxy2G02253' => 'aox', 'Aqoxy2G02411' => 'aox', 'Aqoxy5G00485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BZ66YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K8ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM4FUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6BF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HFV7XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25JBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0YNNV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MAKK6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P70IT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP2Z6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V61LZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YWP64R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3S9AI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7PGHH' => 'arhy', 'AT2G32150' => 'ath', 'AT3G62040' => 'ath', 'AT5G02230' => 'ath', 'AT5G59480' => 'ath', 'AT5G59490' => 'ath', 'ATR0332G060' => 'atr', 'ATR0559G190' => 'atr', 'ATR0693G294' => 'atr', 'Atru.chr3.3975' => 'acertr', 'Atru.chr3.3976' => 'acertr', 'Atru.chr3.3977' => 'acertr', 'Atru.chr4.2498' => 'acertr', 'Atru.chr5.838' => 'acertr', 'Atru.chr8.1990' => 'acertr', 'Atru.chr8.1991' => 'acertr', 'Atru.chr8.1992' => 'acertr', 'AUR62001759' => 'cqu', 'AUR62009545' => 'cqu', 'AUR62010474' => 'cqu', 'AUR62025820' => 'cqu', 'AUR62030422' => 'cqu', 'AUR62033605' => 'cqu', 'AUR62038615' => 'cqu', 'AUR62041347' => 'cqu', 'BcaB01g04574' => 'bca', 'BcaB02g09263' => 'bca', 'BcaB02g10453' => 'bca', 'BcaB05g22513' => 'bca', 'BcaB08g36253' => 'bca', 'BcaB08g36254' => 'bca', 'BcaC01g06519' => 'bca', 'BcaC02g11889' => 'bca', 'BcaC03g14010' => 'bca', 'BcaC03g18439' => 'bca', 'BcaC04g19765' => 'bca', 'BcaC09g48432' => 'bca', 'BcaNung07302' => 'bca', 'BolC2t06040H' => 'bol', 'BolC2t07346H' => 'bol', 'BolC3t13817H' => 'bol', 'BolC4t22625H' => 'bol', 'BolC4t23297H' => 'bol', 'BolC8t51278H' => 'bol', 'BolC9t58050H' => 'bol', 'BolC9t58051H' => 'bol', 'BolC9t60163H' => 'bol', 'BraA02t04712Z' => 'bra', 'BraA02t05791Z' => 'bra', 'BraA03t10483Z' => 'bra', 'BraA05t19795Z' => 'bra', 'BraA05t20276Z' => 'bra', 'BraA09t40827Z' => 'bra', 'BraA10t43750Z' => 'bra', 'BraA10t43751Z' => 'bra', 'BraA10t45370Z' => 'bra', 'C02p00400' => 'bna', 'C02p12460' => 'bna', 'C03p13680' => 'bna', 'C04p10270' => 'bna', 'C04p17500' => 'bna', 'C08p37010' => 'bna', 'C09p51880' => 'bna', 'C09p51890' => 'bna', 'C09p74300' => 'bna', 'CAN.G179.26' => 'can', 'CAN.G3384.1' => 'can', 'CAN.G394.68' => 'can', 'CAN.G907.13' => 'can', 'CANSAT11G0012' => 'cansat', 'CANSAT25G1586' => 'cansat', 'CANSAT35G0735' => 'cansat', 'CANSAT54G0556' => 'cansat', 'CANSAT64G0356' => 'cansat', 'CANSAT78G2042' => 'cansat', 'CARHR125920' => 'chi', 'CARHR131910' => 'chi', 'CARHR172390' => 'chi', 'CARHR211140' => 'chi', 'CARHR285850' => 'chi', 'CARHR285860' => 'chi', 'Carub.0004s1347' => 'cru', 'Carub.0004s1960' => 'cru', 'Carub.0005s2880' => 'cru', 'Carub.0006s0107' => 'cru', 'Carub.0008s2015' => 'cru', 'Carub.0008s2016' => 'cru', 'Carub.0008s2017' => 'cru', 'Ca_01315_v3' => 'car', 'Ca_05063_v3' => 'car', 'Ca_10231_v3' => 'car', 'Ca_10913_v3' => 'car', 'Ca_19156_v3' => 'car', 'Ca_23644_v3' => 'car', 'Ca_26735_v3' => 'car', 'Cc01_g13130' => 'ccan', 'Cc02_g21690' => 'ccan', 'Cc03_g03600' => 'ccan', 'Cc06_g02510' => 'ccan', 'CDE02G1265' => 'cde', 'CDE05G0415' => 'cde', 'CDE08G1082' => 'cde', 'Cfa005780' => 'cfa', 'Cfa011522' => 'cfa', 'Cfa011523' => 'cfa', 'Cfa015627' => 'cfa', 'Cfa017359' => 'cfa', 'Ciclev10005687m.g' => 'ccl', 'Ciclev10012173m.g' => 'ccl', 'Ciclev10021621m.g' => 'ccl', 'Ciclev10028968m.g' => 'ccl', 'Ciclev10029907m.g' => 'ccl', 'CiPaw.01G164800' => 'cil', 'CiPaw.07G083700' => 'cil', 'CiPaw.07G127000' => 'cil', 'CiPaw.07G136900' => 'cil', 'CiPaw.08G081700' => 'cil', 'CiPaw.09G194600' => 'cil', 'CiPaw.10G146500' => 'cil', 'CiPaw.13G091500' => 'cil', 'CiPaw.13G091600' => 'cil', 'ClCG00G003390' => 'cla', 'ClCG01G007220' => 'cla', 'ClCG03G001370' => 'cla', 'ClCG04G008100' => 'cla', 'ClCG06G006110' => 'cla', 'ClCG06G006130' => 'cla', 'ClCG10G021210' => 'cla', 'COL.COLO4_07648' => 'col', 'COL.COLO4_07650' => 'col', 'COL.COLO4_07651' => 'col', 'COL.COLO4_14780' => 'col', 'COL.COLO4_18546' => 'col', 'COL.COLO4_18547' => 'col', 'COL.COLO4_23103' => 'col', 'COL.COLO4_30419' => 'col', 'COL.COLO4_34232' => 'col', 'Cpa.g.sc169.20' => 'cpa', 'Cpa.g.sc57.45' => 'cpa', 'Cpa.g.sc58.124' => 'cpa', 'Cpa.g.sc58.125' => 'cpa', 'Cpa.g.sc81.118' => 'cpa', 'Cpa.g.sc81.119' => 'cpa', 'Cre12.g524700' => 'cre', 'CsaV3_1G034430' => 'csa', 'CsaV3_1G034440' => 'csa', 'CsaV3_1G034450' => 'csa', 'CsaV3_3G034830' => 'csa', 'CsaV3_4G025090' => 'csa', 'CsaV3_5G018660' => 'csa', 'CsaV3_6G038160' => 'csa', 'CSS0003447' => 'camsi', 'CSS0017840' => 'camsi', 'CSS0019260' => 'camsi', 'CSS0040375' => 'camsi', 'CSS0042533' => 'camsi', 'DCAR_005960' => 'dca', 'DCAR_012104' => 'dca', 'DCAR_012105' => 'dca', 'DCAR_012293' => 'dca', 'DCAR_015632' => 'dca', 'DCAR_024602' => 'dca', 'DCAR_028752' => 'dca', 'Dinv06261' => 'din', 'Dinv13982' => 'din', 'Dinv17029' => 'din', 'Dinv18463' => 'din', 'Dinv33181' => 'din', 'Dinv35585' => 'din', 'Dinv37161' => 'din', 'Dinv42977' => 'din', 'Dinv43122' => 'din', 'Dinv44517' => 'din', 'Duzib093G0256' => 'dzi', 'Duzib106G1254' => 'dzi', 'Duzib128G1789' => 'dzi', 'Duzib133G0633' => 'dzi', 'Duzib138G0510' => 'dzi', 'Duzib150G1084' => 'dzi', 'Duzib168G0488' => 'dzi', 'Duzib168G1523' => 'dzi', 'Duzib170G0133' => 'dzi', 'ECA234G1433' => 'eca', 'ECA236G1432' => 'eca', 'ECA236G2256' => 'eca', 'ECA236G2365' => 'eca', 'ECA236G4830' => 'eca', 'ECA248G1505' => 'eca', 'EL10Ac3g06431' => 'bvu', 'EL10Ac5g12577' => 'bvu', 'EL10Ac6g13533' => 'bvu', 'EL10Ac7g16045' => 'bvu', 'Eucgr.A01281' => 'egr', 'Eucgr.B02326' => 'egr', 'Eucgr.H03532' => 'egr', 'Eucgr.K00553' => 'egr', 'Eucgr.K03116' => 'egr', 'FAN02G3963' => 'fan', 'FAN05G0438' => 'fan', 'FAN09G2434' => 'fan', 'FAN12G3984' => 'fan', 'FAN14G0798' => 'fan', 'FAN17G0652' => 'fan', 'FAN19G1988' => 'fan', 'FAN22G0632' => 'fan', 'FAN23G0387' => 'fan', 'FAN26G1323' => 'fan', 'FAN28G0666' => 'fan', 'FvH4_1g26080' => 'fve', 'FvH4_3g36780' => 'fve', 'FvH4_4g15270' => 'fve', 'FvH4_6g13490' => 'fve', 'Glyma.01G098700' => 'gma', 'Glyma.03G065900' => 'gma', 'Glyma.03G073754' => 'gma', 'Glyma.03G073758' => 'gma', 'Glyma.03G083200' => 'gma', 'Glyma.03G225500' => 'gma', 'Glyma.05G037766' => 'gma', 'Glyma.07G133500' => 'gma', 'Glyma.10G139400' => 'gma', 'Glyma.10G248900' => 'gma', 'Glyma.11G137800' => 'gma', 'Glyma.12G061300' => 'gma', 'Glyma.13G337900' => 'gma', 'Glyma.15G036600' => 'gma', 'Glyma.18G182800' => 'gma', 'Glyma.19G222500' => 'gma', 'Glyma.20G144800' => 'gma', 'Gohir.A01G222000' => 'ghi', 'Gohir.A03G044000' => 'ghi', 'Gohir.A03G044100' => 'ghi', 'Gohir.A04G083100' => 'ghi', 'Gohir.A07G127200' => 'ghi', 'Gohir.A07G132400' => 'ghi', 'Gohir.A08G000700' => 'ghi', 'Gohir.A11G327300' => 'ghi', 'Gohir.D01G211500' => 'ghi', 'Gohir.D03G123400' => 'ghi', 'Gohir.D03G123500' => 'ghi', 'Gohir.D04G121800' => 'ghi', 'Gohir.D07G131500' => 'ghi', 'Gohir.D07G136600' => 'ghi', 'Gohir.D08G011600' => 'ghi', 'Gohir.D11G346200' => 'ghi', 'Gorai.001G142800' => 'gra', 'Gorai.001G148700' => 'gra', 'Gorai.002G257300' => 'gra', 'Gorai.003G130000' => 'gra', 'Gorai.003G130100' => 'gra', 'Gorai.004G005300' => 'gra', 'Gorai.007G376500' => 'gra', 'Gorai.012G104700' => 'gra', 'GSVIVG01017946001' => 'vvi', 'GSVIVG01024928001' => 'vvi', 'GSVIVG01028227001' => 'vvi', 'GSVIVG01034151001' => 'vvi', 'HanXRQChr05g0135031' => 'han', 'HanXRQChr05g0135041' => 'han', 'HanXRQChr05g0140021' => 'han', 'HanXRQChr06g0178981' => 'han', 'HanXRQChr07g0188251' => 'han', 'HanXRQChr08g0235311' => 'han', 'HanXRQChr09g0271011' => 'han', 'HanXRQChr10g0293321' => 'han', 'HanXRQChr13g0388171' => 'han', 'Haze_00916' => 'cav', 'Haze_05063' => 'cav', 'Haze_20814' => 'cav', 'Haze_24128' => 'cav', 'Hma1.2p1_0745F.1_g212010' => 'hma', 'Hma1.2p1_0757F.1_g213260' => 'hma', 'Hma1.2p1_0936F.1_g238840' => 'hma', 'Hma1.2p1_1735F.1_g299890' => 'hma', 'Hma1.2p1_1861F.1_g305685' => 'hma', 'HPP92_003397' => 'vpl', 'HPP92_012597' => 'vpl', 'HPP92_015520' => 'vpl', 'HPP92_015539' => 'vpl', 'HPP92_020373' => 'vpl', 'Hund04938' => 'sun', 'Hund10677' => 'sun', 'Hund11033' => 'sun', 'Hund12155' => 'sun', 'Lalb_Chr01g0022551' => 'lal', 'Lalb_Chr03g0042341' => 'lal', 'Lalb_Chr07g0192931' => 'lal', 'Lalb_Chr12g0209551' => 'lal', 'Lalb_Chr19g0125251' => 'lal', 'Lalb_Chr19g0137891' => 'lal', 'Lalb_Chr21g0304641' => 'lal', 'Lalb_Chr21g0309881' => 'lal', 'Lj1A5T12' => 'lonja', 'Lj1C148G10' => 'lonja', 'Lj2A93T83' => 'lonja', 'Lj3A738G68' => 'lonja', 'Lj3C966T1' => 'lonja', 'Lj3g0018958' => 'lja', 'Lj3g0021831' => 'lja', 'Lj3g0025443' => 'lja', 'Lj4g0026809' => 'lja', 'Lj5g0012558' => 'lja', 'Lj5g0021586' => 'lja', 'Lsat_1_v5_gn_5_156840' => 'lsa', 'Lsat_1_v5_gn_8_73460' => 'lsa', 'Lsat_1_v5_gn_8_73481' => 'lsa', 'Lsat_1_v5_gn_9_31601' => 'lsa', 'Lsat_1_v5_gn_9_77320' => 'lsa', 'Manes.01G171300' => 'mes', 'Manes.01G171400' => 'mes', 'Manes.01G236100' => 'mes', 'Manes.02G130500' => 'mes', 'Manes.02G130600' => 'mes', 'Manes.03G180200' => 'mes', 'Manes.05G007000' => 'mes', 'Manes.08G084400' => 'mes', 'Manes.09G092600' => 'mes', 'Manes.15G027900' => 'mes', 'MBI04_g40948_MAGBIO' => 'mbi', 'MBI14_g12123_MAGBIO' => 'mbi', 'MBI18_g28915_MAGBIO' => 'mbi', 'MCO09G053' => 'mco', 'MCO11G782' => 'mco', 'MCO15G215' => 'mco', 'MD03G1088500' => 'mdo', 'MD03G1088600' => 'mdo', 'MD04G1130800' => 'mdo', 'MD09G1291700' => 'mdo', 'MD11G1097500' => 'mdo', 'MD11G1097600' => 'mdo', 'MD12G1143900' => 'mdo', 'MD13G1191400' => 'mdo', 'MD16G1191500' => 'mdo', 'Medtr1g085570' => 'mtr', 'Medtr1g104610' => 'mtr', 'Medtr2g097520' => 'mtr', 'Medtr4g021800' => 'mtr', 'Medtr4g021825' => 'mtr', 'Medtr4g064270' => 'mtr', 'Medtr4g064380' => 'mtr', 'Medtr7g062150' => 'mtr', 'MELO3C003138.2' => 'cme', 'MELO3C005187.2' => 'cme', 'MELO3C009252.2' => 'cme', 'MELO3C014481.2' => 'cme', 'MELO3C020616.2' => 'cme', 'MELO3C020617.2' => 'cme', 'MELO3C020618.2' => 'cme', 'Migut.G00328' => 'egut', 'Migut.J00320' => 'egut', 'Migut.L01000' => 'egut', 'Migut.L01953' => 'egut', 'MSTRG.10253' => 'ama', 'MSTRG.19077' => 'ama', 'MSTRG.26780' => 'ama', 'MSTRG.4023' => 'ama', 'MSTRG.5655' => 'ama', 'MSTRG.9992' => 'ama', 'Nitab4.5_0000043g0310' => 'nta', 'Nitab4.5_0000463g0080' => 'nta', 'Nitab4.5_0000705g0170' => 'nta', 'Nitab4.5_0001326g0060' => 'nta', 'Nitab4.5_0001628g0030' => 'nta', 'Nitab4.5_0002103g0110' => 'nta', 'Nitab4.5_0002946g0030' => 'nta', 'Nitab4.5_0004639g0030' => 'nta', 'Nn2g11149' => 'nnu', 'Nn2g13389' => 'nnu', 'Nn4g25326' => 'nnu', 'Nn4g26290' => 'nnu', 'Nn5g29865' => 'nnu', 'Oeu004163.1' => 'oeu', 'Oeu006901.1' => 'oeu', 'Oeu010096.1' => 'oeu', 'Oeu024340.1' => 'oeu', 'Oeu048369.1' => 'oeu', 'Os01g0973000' => 'osa', 'Os03g0273800' => 'osa', 'Os03g0701200' => 'osa', 'Os03g0834050' => 'osa', 'Os07g0634400' => 'osa', 'Peaxi162Scf00092g01414' => 'pax', 'Peaxi162Scf00165g00818' => 'pax', 'Peaxi162Scf00309g00516' => 'pax', 'Peaxi162Scf00774g00218' => 'pax', 'PGR004G1824' => 'pgr', 'PGR004G2606' => 'pgr', 'PGR031G2716' => 'pgr', 'PGR102G2460' => 'pgr', 'PGR142G2599' => 'pgr', 'PGSC0003DMG400000843' => 'stu', 'PGSC0003DMG400008829' => 'stu', 'PGSC0003DMG400030418' => 'stu', 'PGSC0003DMG400031834' => 'stu', 'PGSC0003DMG401028300' => 'stu', 'PGSC0003DMG402028300' => 'stu', 'Phvul.001G219300' => 'pvu', 'Phvul.007G056000' => 'pvu', 'Phvul.007G208000' => 'pvu', 'Phvul.008G119500' => 'pvu', 'Phvul.010G011200' => 'pvu', 'Phvul.010G014800' => 'pvu', 'Phvul.011G062900' => 'pvu', 'Phvul.L007043' => 'pvu', 'Potri.001G242300' => 'ptr', 'Potri.002G185300' => 'ptr', 'Potri.006G086900' => 'ptr', 'Potri.008G151700' => 'ptr', 'Potri.009G033500' => 'ptr', 'Potri.010G089300' => 'ptr', 'Potri.014G110800' => 'ptr', 'Pp3c27_8130' => 'ppa', 'Pp3c6_27410' => 'ppa', 'PRCOL_00001659' => 'pco', 'PRCOL_00001927' => 'pco', 'PRCOL_00003649' => 'pco', 'Prupe.1G011600' => 'ppe', 'Prupe.3G000800' => 'ppe', 'Prupe.3G001100' => 'ppe', 'Prupe.6G072700' => 'ppe', 'Prupe.6G072800' => 'ppe', 'Prupe.6G257300' => 'ppe', 'Prupe.8G033000' => 'ppe', 'Psat0s2633g0080' => 'psa', 'Psat0s3396g0080' => 'psa', 'Psat0s3396g0200' => 'psa', 'Psat3g139080' => 'psa', 'Psat5g285080' => 'psa', 'Psat6g157760' => 'psa', 'Psat6g208440' => 'psa', 'Psat7g215320' => 'psa', 'Psat7g215400' => 'psa', 'Psat7g235600' => 'psa', 'Psat7g235760' => 'psa', 'PSO063G4603' => 'pso', 'PSO210G0182' => 'pso', 'PSO210G0196' => 'pso', 'PSO339G0394' => 'pso', 'PSO339G4127' => 'pso', 'PSO513G0064' => 'pso', 'PSO761G0079' => 'pso', 'QL01p031003' => 'qlo', 'QL01p031078' => 'qlo', 'QL06p003004' => 'qlo', 'QL07p048731' => 'qlo', 'QL09p037427' => 'qlo', 'RcHm_v2.0_Chr3g0466361' => 'rch', 'RcHm_v2.0_Chr3g0485571' => 'rch', 'RcHm_v2.0_Chr4g0416551' => 'rch', 'RcHm_v2.0_Chr5g0065831' => 'rch', 'Rhsim01G0230500' => 'rsi', 'Rhsim05G0194000' => 'rsi', 'Rhsim08G0250400' => 'rsi', 'Sabra02G0131000' => 'sbr', 'Sabra06G0066300' => 'sbr', 'Sabra08G0115500' => 'sbr', 'Sabra09G0023900' => 'sbr', 'Sabra10G0054000' => 'sbr', 'Sabra14G0081500' => 'sbr', 'Sabra16G0147100' => 'sbr', 'SalBow2G2957' => 'sbo', 'SalBow4G3320' => 'sbo', 'SalBow8G1894' => 'sbo', 'Sc07g0007950' => 'sci', 'Sc12g0001360' => 'sci', 'Sc13g0004330' => 'sci', 'Sc20g0005010' => 'sci', 'Sed0000361' => 'sed', 'Sed0001706' => 'sed', 'Sed0002422' => 'sed', 'Sed0004029' => 'sed', 'Sed0004602' => 'sed', 'Sed0004943' => 'sed', 'Sed0008646' => 'sed', 'Sed0023313' => 'sed', 'Sed0024843' => 'sed', 'SEGI_00081' => 'sgi', 'SEGI_00947' => 'sgi', 'SEGI_04046' => 'sgi', 'SEGI_06880' => 'sgi', 'SEGI_09736' => 'sgi', 'SEGI_12741' => 'sgi', 'SEGI_14530' => 'sgi', 'SEGI_20705' => 'sgi', 'SEGI_26088' => 'sgi', 'SEGI_28323' => 'sgi', 'SEGI_33343' => 'sgi', 'SGA_v2.0_scaffold126G33775' => 'sas', 'SGA_v2.0_scaffold2G01337' => 'sas', 'SGA_v2.0_scaffold38G15006' => 'sas', 'SGA_v2.0_scaffold39G15264' => 'sas', 'SGA_v2.0_scaffold453G51880' => 'sas', 'SHI12696' => 'shi', 'SMO367G1096' => 'smo', 'Solyc01g068630.3' => 'sly', 'Solyc05g011880.3' => 'sly', 'Solyc06g076300.3' => 'sly', 'Solyc09g010940.4' => 'sly', 'Solyc09g075890.3' => 'sly', 'Sopen01g030560' => 'spe', 'Sopen05g006630' => 'spe', 'Sopen06g032720' => 'spe', 'Sopen09g005660' => 'spe', 'Sopen09g030690' => 'spe', 'Sp4g14540' => 'spa', 'Sp4g20030' => 'spa', 'Sp5g01320' => 'spa', 'Sp6g21170' => 'spa', 'Sp6g21180' => 'spa', 'Sp6g21190' => 'spa', 'Sp6g40220' => 'spa', 'TAR362G0122' => 'tar', 'TAR362G1338' => 'tar', 'TAR369G0590' => 'tar', 'TAR371G0824' => 'tar', 'TAR622G1429' => 'tar', 'TAR623G0734' => 'tar', 'TAR625G0441' => 'tar', 'TAR629G0976' => 'tar', 'TAR633G1195' => 'tar', 'TAR636G2660' => 'tar', 'THA.LOC104799440' => 'tha', 'THA.LOC104800966' => 'tha', 'THA.LOC104806559' => 'tha', 'THA.LOC104810765' => 'tha', 'THA.LOC104816266' => 'tha', 'THA.LOC104817419' => 'tha', 'THA.LOC104827021' => 'tha', 'Thecc.01G327400' => 'tca', 'Thecc.04G229200' => 'tca', 'Thecc.05G037400' => 'tca', 'Thecc.09G318600' => 'tca', 'Thecc.09G318700' => 'tca', 'Thhalv10006238m.g' => 'esa', 'Thhalv10014321m.g' => 'esa', 'Thhalv10014335m.g' => 'esa', 'Thhalv10015826m.g' => 'esa', 'Thhalv10017107m.g' => 'esa', 'Thhalv10017180m.g' => 'esa', 'Thhalv10029339m.g' => 'esa', 'TPR.G1699' => 'tpr', 'TPR.G23609' => 'tpr', 'TPR.G3081' => 'tpr', 'TPR.G40397' => 'tpr', 'TPR.G5522' => 'tpr', 'TPR.G5618' => 'tpr', 'TPR.G5626' => 'tpr', 'TWI09G1632' => 'twi', 'TWI23G1230' => 'twi', 'TWI53G1064' => 'twi', 'TWI59G0751' => 'twi', 'TWI74G0947' => 'twi', 'TWI77G0337' => 'twi', 'TWI79G1254' => 'twi', 'unitig_0.g2341' => 'ugi', 'unitig_26.g10006' => 'ugi', 'unitig_26.g10008' => 'ugi', 'unitig_26.g9192' => 'ugi', 'vmacro14547' => 'vma', 'vmacro15333' => 'vma', 'vmacro18743' => 'vma', 'vmacro20166' => 'vma', 'VMungo0331G0523' => 'vmu', 'VMungo0331G1202' => 'vmu', 'VMungo0720G1228' => 'vmu', 'VMungo0720G1514' => 'vmu', 'VMungo1080G0169' => 'vmu', 'VMungo1127G1475' => 'vmu', 'VMungo1383G1208' => 'vmu', 'VMungo1383G1698' => 'vmu', 'Zm00001eb012270' => 'zma', 'Zm00001eb054100' => 'zma', 'Zm00001eb063350' => 'zma', 'Zm00001eb328560' => 'zma', 'Zm00001eb342820' => 'zma', 'Zm00001eb362210' => 'zma', 'Zm00001eb397730' => 'zma', 'Zm00001eb399750' => 'zma' ), 'gf_id' => 'HOM05D000959', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000959' ), 'data_identifier' => 'HOM05D000959', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000959', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '622', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p07100' => 'bna', 'A03p11720' => 'bna', 'A05p08300' => 'bna', 'A05p13380' => 'bna', 'A09p54130' => 'bna', 'A10p16690' => 'bna', 'A10p16700' => 'bna', 'A10p33390' => 'bna', 'Aa31LG10G16020' => 'aar', 'Aa31LG1G11810' => 'aar', 'Aa31LG1G11830' => 'aar', 'Aa31LG1G22510' => 'aar', 'Aa31LG5G4890' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5793' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2310' => 'aag', 'Actinidia08499' => 'ach', 'Actinidia11262' => 'ach', 'Actinidia23926' => 'ach', 'Actinidia34420' => 'ach', 'Actinidia36970' => 'ach', 'Ah.02g111220' => 'amhyb', 'Ah.15g097750' => 'amhyb', 'AL4G27500' => 'aly', 'AL6G11470' => 'aly', 'AL8G35950' => 'aly', 'AL8G35960' => 'aly', 'AL8G35970' => 'aly', 'Aqoxy1G00912' => 'aox', 'Aqoxy2G02253' => 'aox', 'Aqoxy2G02411' => 'aox', 'Aqoxy5G00485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BZ66YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K8ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM4FUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6BF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HFV7XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25JBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0YNNV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MAKK6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P70IT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP2Z6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V61LZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YWP64R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3S9AI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7PGHH' => 'arhy', 'AT2G32150' => 'ath', 'AT3G62040' => 'ath', 'AT5G02230' => 'ath', 'AT5G59480' => 'ath', 'AT5G59490' => 'ath', 'ATR0332G060' => 'atr', 'ATR0559G190' => 'atr', 'ATR0693G294' => 'atr', 'Atru.chr3.3975' => 'acertr', 'Atru.chr3.3976' => 'acertr', 'Atru.chr3.3977' => 'acertr', 'Atru.chr4.2498' => 'acertr', 'Atru.chr5.838' => 'acertr', 'Atru.chr8.1990' => 'acertr', 'Atru.chr8.1991' => 'acertr', 'Atru.chr8.1992' => 'acertr', 'AUR62001759' => 'cqu', 'AUR62009545' => 'cqu', 'AUR62010474' => 'cqu', 'AUR62025820' => 'cqu', 'AUR62030422' => 'cqu', 'AUR62033605' => 'cqu', 'AUR62038615' => 'cqu', 'AUR62041347' => 'cqu', 'BcaB01g04574' => 'bca', 'BcaB02g09263' => 'bca', 'BcaB02g10453' => 'bca', 'BcaB05g22513' => 'bca', 'BcaB08g36253' => 'bca', 'BcaB08g36254' => 'bca', 'BcaC01g06519' => 'bca', 'BcaC02g11889' => 'bca', 'BcaC03g14010' => 'bca', 'BcaC03g18439' => 'bca', 'BcaC04g19765' => 'bca', 'BcaC09g48432' => 'bca', 'BcaNung07302' => 'bca', 'BolC2t06040H' => 'bol', 'BolC2t07346H' => 'bol', 'BolC3t13817H' => 'bol', 'BolC4t22625H' => 'bol', 'BolC4t23297H' => 'bol', 'BolC8t51278H' => 'bol', 'BolC9t58050H' => 'bol', 'BolC9t58051H' => 'bol', 'BolC9t60163H' => 'bol', 'BraA02t04712Z' => 'bra', 'BraA02t05791Z' => 'bra', 'BraA03t10483Z' => 'bra', 'BraA05t19795Z' => 'bra', 'BraA05t20276Z' => 'bra', 'BraA09t40827Z' => 'bra', 'BraA10t43750Z' => 'bra', 'BraA10t43751Z' => 'bra', 'BraA10t45370Z' => 'bra', 'C02p00400' => 'bna', 'C02p12460' => 'bna', 'C03p13680' => 'bna', 'C04p10270' => 'bna', 'C04p17500' => 'bna', 'C08p37010' => 'bna', 'C09p51880' => 'bna', 'C09p51890' => 'bna', 'C09p74300' => 'bna', 'CAN.G179.26' => 'can', 'CAN.G3384.1' => 'can', 'CAN.G394.68' => 'can', 'CAN.G907.13' => 'can', 'CANSAT11G0012' => 'cansat', 'CANSAT25G1586' => 'cansat', 'CANSAT35G0735' => 'cansat', 'CANSAT54G0556' => 'cansat', 'CANSAT64G0356' => 'cansat', 'CANSAT78G2042' => 'cansat', 'CARHR125920' => 'chi', 'CARHR131910' => 'chi', 'CARHR172390' => 'chi', 'CARHR211140' => 'chi', 'CARHR285850' => 'chi', 'CARHR285860' => 'chi', 'Carub.0004s1347' => 'cru', 'Carub.0004s1960' => 'cru', 'Carub.0005s2880' => 'cru', 'Carub.0006s0107' => 'cru', 'Carub.0008s2015' => 'cru', 'Carub.0008s2016' => 'cru', 'Carub.0008s2017' => 'cru', 'Ca_01315_v3' => 'car', 'Ca_05063_v3' => 'car', 'Ca_10231_v3' => 'car', 'Ca_10913_v3' => 'car', 'Ca_19156_v3' => 'car', 'Ca_23644_v3' => 'car', 'Ca_26735_v3' => 'car', 'Cc01_g13130' => 'ccan', 'Cc02_g21690' => 'ccan', 'Cc03_g03600' => 'ccan', 'Cc06_g02510' => 'ccan', 'CDE02G1265' => 'cde', 'CDE05G0415' => 'cde', 'CDE08G1082' => 'cde', 'Cfa005780' => 'cfa', 'Cfa011522' => 'cfa', 'Cfa011523' => 'cfa', 'Cfa015627' => 'cfa', 'Cfa017359' => 'cfa', 'Ciclev10005687m.g' => 'ccl', 'Ciclev10012173m.g' => 'ccl', 'Ciclev10021621m.g' => 'ccl', 'Ciclev10028968m.g' => 'ccl', 'Ciclev10029907m.g' => 'ccl', 'CiPaw.01G164800' => 'cil', 'CiPaw.07G083700' => 'cil', 'CiPaw.07G127000' => 'cil', 'CiPaw.07G136900' => 'cil', 'CiPaw.08G081700' => 'cil', 'CiPaw.09G194600' => 'cil', 'CiPaw.10G146500' => 'cil', 'CiPaw.13G091500' => 'cil', 'CiPaw.13G091600' => 'cil', 'ClCG00G003390' => 'cla', 'ClCG01G007220' => 'cla', 'ClCG03G001370' => 'cla', 'ClCG04G008100' => 'cla', 'ClCG06G006110' => 'cla', 'ClCG06G006130' => 'cla', 'ClCG10G021210' => 'cla', 'COL.COLO4_07648' => 'col', 'COL.COLO4_07650' => 'col', 'COL.COLO4_07651' => 'col', 'COL.COLO4_14780' => 'col', 'COL.COLO4_18546' => 'col', 'COL.COLO4_18547' => 'col', 'COL.COLO4_23103' => 'col', 'COL.COLO4_30419' => 'col', 'COL.COLO4_34232' => 'col', 'Cpa.g.sc169.20' => 'cpa', 'Cpa.g.sc57.45' => 'cpa', 'Cpa.g.sc58.124' => 'cpa', 'Cpa.g.sc58.125' => 'cpa', 'Cpa.g.sc81.118' => 'cpa', 'Cpa.g.sc81.119' => 'cpa', 'Cre12.g524700' => 'cre', 'CsaV3_1G034430' => 'csa', 'CsaV3_1G034440' => 'csa', 'CsaV3_1G034450' => 'csa', 'CsaV3_3G034830' => 'csa', 'CsaV3_4G025090' => 'csa', 'CsaV3_5G018660' => 'csa', 'CsaV3_6G038160' => 'csa', 'CSS0003447' => 'camsi', 'CSS0017840' => 'camsi', 'CSS0019260' => 'camsi', 'CSS0040375' => 'camsi', 'CSS0042533' => 'camsi', 'DCAR_005960' => 'dca', 'DCAR_012104' => 'dca', 'DCAR_012105' => 'dca', 'DCAR_012293' => 'dca', 'DCAR_015632' => 'dca', 'DCAR_024602' => 'dca', 'DCAR_028752' => 'dca', 'Dinv06261' => 'din', 'Dinv13982' => 'din', 'Dinv17029' => 'din', 'Dinv18463' => 'din', 'Dinv33181' => 'din', 'Dinv35585' => 'din', 'Dinv37161' => 'din', 'Dinv42977' => 'din', 'Dinv43122' => 'din', 'Dinv44517' => 'din', 'Duzib093G0256' => 'dzi', 'Duzib106G1254' => 'dzi', 'Duzib128G1789' => 'dzi', 'Duzib133G0633' => 'dzi', 'Duzib138G0510' => 'dzi', 'Duzib150G1084' => 'dzi', 'Duzib168G0488' => 'dzi', 'Duzib168G1523' => 'dzi', 'Duzib170G0133' => 'dzi', 'ECA234G1433' => 'eca', 'ECA236G1432' => 'eca', 'ECA236G2256' => 'eca', 'ECA236G2365' => 'eca', 'ECA236G4830' => 'eca', 'ECA248G1505' => 'eca', 'EL10Ac3g06431' => 'bvu', 'EL10Ac5g12577' => 'bvu', 'EL10Ac6g13533' => 'bvu', 'EL10Ac7g16045' => 'bvu', 'Eucgr.A01281' => 'egr', 'Eucgr.B02326' => 'egr', 'Eucgr.H03532' => 'egr', 'Eucgr.K00553' => 'egr', 'Eucgr.K03116' => 'egr', 'FAN02G3963' => 'fan', 'FAN05G0438' => 'fan', 'FAN09G2434' => 'fan', 'FAN12G3984' => 'fan', 'FAN14G0798' => 'fan', 'FAN17G0652' => 'fan', 'FAN19G1988' => 'fan', 'FAN22G0632' => 'fan', 'FAN23G0387' => 'fan', 'FAN26G1323' => 'fan', 'FAN28G0666' => 'fan', 'FvH4_1g26080' => 'fve', 'FvH4_3g36780' => 'fve', 'FvH4_4g15270' => 'fve', 'FvH4_6g13490' => 'fve', 'Glyma.01G098700' => 'gma', 'Glyma.03G065900' => 'gma', 'Glyma.03G073754' => 'gma', 'Glyma.03G073758' => 'gma', 'Glyma.03G083200' => 'gma', 'Glyma.03G225500' => 'gma', 'Glyma.05G037766' => 'gma', 'Glyma.07G133500' => 'gma', 'Glyma.10G139400' => 'gma', 'Glyma.10G248900' => 'gma', 'Glyma.11G137800' => 'gma', 'Glyma.12G061300' => 'gma', 'Glyma.13G337900' => 'gma', 'Glyma.15G036600' => 'gma', 'Glyma.18G182800' => 'gma', 'Glyma.19G222500' => 'gma', 'Glyma.20G144800' => 'gma', 'Gohir.A01G222000' => 'ghi', 'Gohir.A03G044000' => 'ghi', 'Gohir.A03G044100' => 'ghi', 'Gohir.A04G083100' => 'ghi', 'Gohir.A07G127200' => 'ghi', 'Gohir.A07G132400' => 'ghi', 'Gohir.A08G000700' => 'ghi', 'Gohir.A11G327300' => 'ghi', 'Gohir.D01G211500' => 'ghi', 'Gohir.D03G123400' => 'ghi', 'Gohir.D03G123500' => 'ghi', 'Gohir.D04G121800' => 'ghi', 'Gohir.D07G131500' => 'ghi', 'Gohir.D07G136600' => 'ghi', 'Gohir.D08G011600' => 'ghi', 'Gohir.D11G346200' => 'ghi', 'Gorai.001G142800' => 'gra', 'Gorai.001G148700' => 'gra', 'Gorai.002G257300' => 'gra', 'Gorai.003G130000' => 'gra', 'Gorai.003G130100' => 'gra', 'Gorai.004G005300' => 'gra', 'Gorai.007G376500' => 'gra', 'Gorai.012G104700' => 'gra', 'GSVIVG01017946001' => 'vvi', 'GSVIVG01024928001' => 'vvi', 'GSVIVG01028227001' => 'vvi', 'GSVIVG01034151001' => 'vvi', 'HanXRQChr05g0135031' => 'han', 'HanXRQChr05g0135041' => 'han', 'HanXRQChr05g0140021' => 'han', 'HanXRQChr06g0178981' => 'han', 'HanXRQChr07g0188251' => 'han', 'HanXRQChr08g0235311' => 'han', 'HanXRQChr09g0271011' => 'han', 'HanXRQChr10g0293321' => 'han', 'HanXRQChr13g0388171' => 'han', 'Haze_00916' => 'cav', 'Haze_05063' => 'cav', 'Haze_20814' => 'cav', 'Haze_24128' => 'cav', 'Hma1.2p1_0745F.1_g212010' => 'hma', 'Hma1.2p1_0757F.1_g213260' => 'hma', 'Hma1.2p1_0936F.1_g238840' => 'hma', 'Hma1.2p1_1735F.1_g299890' => 'hma', 'Hma1.2p1_1861F.1_g305685' => 'hma', 'HPP92_003397' => 'vpl', 'HPP92_012597' => 'vpl', 'HPP92_015520' => 'vpl', 'HPP92_015539' => 'vpl', 'HPP92_020373' => 'vpl', 'Hund04938' => 'sun', 'Hund10677' => 'sun', 'Hund11033' => 'sun', 'Hund12155' => 'sun', 'Lalb_Chr01g0022551' => 'lal', 'Lalb_Chr03g0042341' => 'lal', 'Lalb_Chr07g0192931' => 'lal', 'Lalb_Chr12g0209551' => 'lal', 'Lalb_Chr19g0125251' => 'lal', 'Lalb_Chr19g0137891' => 'lal', 'Lalb_Chr21g0304641' => 'lal', 'Lalb_Chr21g0309881' => 'lal', 'Lj1A5T12' => 'lonja', 'Lj1C148G10' => 'lonja', 'Lj2A93T83' => 'lonja', 'Lj3A738G68' => 'lonja', 'Lj3C966T1' => 'lonja', 'Lj3g0018958' => 'lja', 'Lj3g0021831' => 'lja', 'Lj3g0025443' => 'lja', 'Lj4g0026809' => 'lja', 'Lj5g0012558' => 'lja', 'Lj5g0021586' => 'lja', 'Lsat_1_v5_gn_5_156840' => 'lsa', 'Lsat_1_v5_gn_8_73460' => 'lsa', 'Lsat_1_v5_gn_8_73481' => 'lsa', 'Lsat_1_v5_gn_9_31601' => 'lsa', 'Lsat_1_v5_gn_9_77320' => 'lsa', 'Manes.01G171300' => 'mes', 'Manes.01G171400' => 'mes', 'Manes.01G236100' => 'mes', 'Manes.02G130500' => 'mes', 'Manes.02G130600' => 'mes', 'Manes.03G180200' => 'mes', 'Manes.05G007000' => 'mes', 'Manes.08G084400' => 'mes', 'Manes.09G092600' => 'mes', 'Manes.15G027900' => 'mes', 'MBI04_g40948_MAGBIO' => 'mbi', 'MBI14_g12123_MAGBIO' => 'mbi', 'MBI18_g28915_MAGBIO' => 'mbi', 'MCO09G053' => 'mco', 'MCO11G782' => 'mco', 'MCO15G215' => 'mco', 'MD03G1088500' => 'mdo', 'MD03G1088600' => 'mdo', 'MD04G1130800' => 'mdo', 'MD09G1291700' => 'mdo', 'MD11G1097500' => 'mdo', 'MD11G1097600' => 'mdo', 'MD12G1143900' => 'mdo', 'MD13G1191400' => 'mdo', 'MD16G1191500' => 'mdo', 'Medtr1g085570' => 'mtr', 'Medtr1g104610' => 'mtr', 'Medtr2g097520' => 'mtr', 'Medtr4g021800' => 'mtr', 'Medtr4g021825' => 'mtr', 'Medtr4g064270' => 'mtr', 'Medtr4g064380' => 'mtr', 'Medtr7g062150' => 'mtr', 'MELO3C003138.2' => 'cme', 'MELO3C005187.2' => 'cme', 'MELO3C009252.2' => 'cme', 'MELO3C014481.2' => 'cme', 'MELO3C020616.2' => 'cme', 'MELO3C020617.2' => 'cme', 'MELO3C020618.2' => 'cme', 'Migut.G00328' => 'egut', 'Migut.J00320' => 'egut', 'Migut.L01000' => 'egut', 'Migut.L01953' => 'egut', 'MSTRG.10253' => 'ama', 'MSTRG.19077' => 'ama', 'MSTRG.26780' => 'ama', 'MSTRG.4023' => 'ama', 'MSTRG.5655' => 'ama', 'MSTRG.9992' => 'ama', 'Nitab4.5_0000043g0310' => 'nta', 'Nitab4.5_0000463g0080' => 'nta', 'Nitab4.5_0000705g0170' => 'nta', 'Nitab4.5_0001326g0060' => 'nta', 'Nitab4.5_0001628g0030' => 'nta', 'Nitab4.5_0002103g0110' => 'nta', 'Nitab4.5_0002946g0030' => 'nta', 'Nitab4.5_0004639g0030' => 'nta', 'Nn2g11149' => 'nnu', 'Nn2g13389' => 'nnu', 'Nn4g25326' => 'nnu', 'Nn4g26290' => 'nnu', 'Nn5g29865' => 'nnu', 'Oeu004163.1' => 'oeu', 'Oeu006901.1' => 'oeu', 'Oeu010096.1' => 'oeu', 'Oeu024340.1' => 'oeu', 'Oeu048369.1' => 'oeu', 'Os01g0973000' => 'osa', 'Os03g0273800' => 'osa', 'Os03g0701200' => 'osa', 'Os03g0834050' => 'osa', 'Os07g0634400' => 'osa', 'Peaxi162Scf00092g01414' => 'pax', 'Peaxi162Scf00165g00818' => 'pax', 'Peaxi162Scf00309g00516' => 'pax', 'Peaxi162Scf00774g00218' => 'pax', 'PGR004G1824' => 'pgr', 'PGR004G2606' => 'pgr', 'PGR031G2716' => 'pgr', 'PGR102G2460' => 'pgr', 'PGR142G2599' => 'pgr', 'PGSC0003DMG400000843' => 'stu', 'PGSC0003DMG400008829' => 'stu', 'PGSC0003DMG400030418' => 'stu', 'PGSC0003DMG400031834' => 'stu', 'PGSC0003DMG401028300' => 'stu', 'PGSC0003DMG402028300' => 'stu', 'Phvul.001G219300' => 'pvu', 'Phvul.007G056000' => 'pvu', 'Phvul.007G208000' => 'pvu', 'Phvul.008G119500' => 'pvu', 'Phvul.010G011200' => 'pvu', 'Phvul.010G014800' => 'pvu', 'Phvul.011G062900' => 'pvu', 'Phvul.L007043' => 'pvu', 'Potri.001G242300' => 'ptr', 'Potri.002G185300' => 'ptr', 'Potri.006G086900' => 'ptr', 'Potri.008G151700' => 'ptr', 'Potri.009G033500' => 'ptr', 'Potri.010G089300' => 'ptr', 'Potri.014G110800' => 'ptr', 'Pp3c27_8130' => 'ppa', 'Pp3c6_27410' => 'ppa', 'PRCOL_00001659' => 'pco', 'PRCOL_00001927' => 'pco', 'PRCOL_00003649' => 'pco', 'Prupe.1G011600' => 'ppe', 'Prupe.3G000800' => 'ppe', 'Prupe.3G001100' => 'ppe', 'Prupe.6G072700' => 'ppe', 'Prupe.6G072800' => 'ppe', 'Prupe.6G257300' => 'ppe', 'Prupe.8G033000' => 'ppe', 'Psat0s2633g0080' => 'psa', 'Psat0s3396g0080' => 'psa', 'Psat0s3396g0200' => 'psa', 'Psat3g139080' => 'psa', 'Psat5g285080' => 'psa', 'Psat6g157760' => 'psa', 'Psat6g208440' => 'psa', 'Psat7g215320' => 'psa', 'Psat7g215400' => 'psa', 'Psat7g235600' => 'psa', 'Psat7g235760' => 'psa', 'PSO063G4603' => 'pso', 'PSO210G0182' => 'pso', 'PSO210G0196' => 'pso', 'PSO339G0394' => 'pso', 'PSO339G4127' => 'pso', 'PSO513G0064' => 'pso', 'PSO761G0079' => 'pso', 'QL01p031003' => 'qlo', 'QL01p031078' => 'qlo', 'QL06p003004' => 'qlo', 'QL07p048731' => 'qlo', 'QL09p037427' => 'qlo', 'RcHm_v2.0_Chr3g0466361' => 'rch', 'RcHm_v2.0_Chr3g0485571' => 'rch', 'RcHm_v2.0_Chr4g0416551' => 'rch', 'RcHm_v2.0_Chr5g0065831' => 'rch', 'Rhsim01G0230500' => 'rsi', 'Rhsim05G0194000' => 'rsi', 'Rhsim08G0250400' => 'rsi', 'Sabra02G0131000' => 'sbr', 'Sabra06G0066300' => 'sbr', 'Sabra08G0115500' => 'sbr', 'Sabra09G0023900' => 'sbr', 'Sabra10G0054000' => 'sbr', 'Sabra14G0081500' => 'sbr', 'Sabra16G0147100' => 'sbr', 'SalBow2G2957' => 'sbo', 'SalBow4G3320' => 'sbo', 'SalBow8G1894' => 'sbo', 'Sc07g0007950' => 'sci', 'Sc12g0001360' => 'sci', 'Sc13g0004330' => 'sci', 'Sc20g0005010' => 'sci', 'Sed0000361' => 'sed', 'Sed0001706' => 'sed', 'Sed0002422' => 'sed', 'Sed0004029' => 'sed', 'Sed0004602' => 'sed', 'Sed0004943' => 'sed', 'Sed0008646' => 'sed', 'Sed0023313' => 'sed', 'Sed0024843' => 'sed', 'SEGI_00081' => 'sgi', 'SEGI_00947' => 'sgi', 'SEGI_04046' => 'sgi', 'SEGI_06880' => 'sgi', 'SEGI_09736' => 'sgi', 'SEGI_12741' => 'sgi', 'SEGI_14530' => 'sgi', 'SEGI_20705' => 'sgi', 'SEGI_26088' => 'sgi', 'SEGI_28323' => 'sgi', 'SEGI_33343' => 'sgi', 'SGA_v2.0_scaffold126G33775' => 'sas', 'SGA_v2.0_scaffold2G01337' => 'sas', 'SGA_v2.0_scaffold38G15006' => 'sas', 'SGA_v2.0_scaffold39G15264' => 'sas', 'SGA_v2.0_scaffold453G51880' => 'sas', 'SHI12696' => 'shi', 'SMO367G1096' => 'smo', 'Solyc01g068630.3' => 'sly', 'Solyc05g011880.3' => 'sly', 'Solyc06g076300.3' => 'sly', 'Solyc09g010940.4' => 'sly', 'Solyc09g075890.3' => 'sly', 'Sopen01g030560' => 'spe', 'Sopen05g006630' => 'spe', 'Sopen06g032720' => 'spe', 'Sopen09g005660' => 'spe', 'Sopen09g030690' => 'spe', 'Sp4g14540' => 'spa', 'Sp4g20030' => 'spa', 'Sp5g01320' => 'spa', 'Sp6g21170' => 'spa', 'Sp6g21180' => 'spa', 'Sp6g21190' => 'spa', 'Sp6g40220' => 'spa', 'TAR362G0122' => 'tar', 'TAR362G1338' => 'tar', 'TAR369G0590' => 'tar', 'TAR371G0824' => 'tar', 'TAR622G1429' => 'tar', 'TAR623G0734' => 'tar', 'TAR625G0441' => 'tar', 'TAR629G0976' => 'tar', 'TAR633G1195' => 'tar', 'TAR636G2660' => 'tar', 'THA.LOC104799440' => 'tha', 'THA.LOC104800966' => 'tha', 'THA.LOC104806559' => 'tha', 'THA.LOC104810765' => 'tha', 'THA.LOC104816266' => 'tha', 'THA.LOC104817419' => 'tha', 'THA.LOC104827021' => 'tha', 'Thecc.01G327400' => 'tca', 'Thecc.04G229200' => 'tca', 'Thecc.05G037400' => 'tca', 'Thecc.09G318600' => 'tca', 'Thecc.09G318700' => 'tca', 'Thhalv10006238m.g' => 'esa', 'Thhalv10014321m.g' => 'esa', 'Thhalv10014335m.g' => 'esa', 'Thhalv10015826m.g' => 'esa', 'Thhalv10017107m.g' => 'esa', 'Thhalv10017180m.g' => 'esa', 'Thhalv10029339m.g' => 'esa', 'TPR.G1699' => 'tpr', 'TPR.G23609' => 'tpr', 'TPR.G3081' => 'tpr', 'TPR.G40397' => 'tpr', 'TPR.G5522' => 'tpr', 'TPR.G5618' => 'tpr', 'TPR.G5626' => 'tpr', 'TWI09G1632' => 'twi', 'TWI23G1230' => 'twi', 'TWI53G1064' => 'twi', 'TWI59G0751' => 'twi', 'TWI74G0947' => 'twi', 'TWI77G0337' => 'twi', 'TWI79G1254' => 'twi', 'unitig_0.g2341' => 'ugi', 'unitig_26.g10006' => 'ugi', 'unitig_26.g10008' => 'ugi', 'unitig_26.g9192' => 'ugi', 'vmacro14547' => 'vma', 'vmacro15333' => 'vma', 'vmacro18743' => 'vma', 'vmacro20166' => 'vma', 'VMungo0331G0523' => 'vmu', 'VMungo0331G1202' => 'vmu', 'VMungo0720G1228' => 'vmu', 'VMungo0720G1514' => 'vmu', 'VMungo1080G0169' => 'vmu', 'VMungo1127G1475' => 'vmu', 'VMungo1383G1208' => 'vmu', 'VMungo1383G1698' => 'vmu', 'Zm00001eb012270' => 'zma', 'Zm00001eb054100' => 'zma', 'Zm00001eb063350' => 'zma', 'Zm00001eb328560' => 'zma', 'Zm00001eb342820' => 'zma', 'Zm00001eb362210' => 'zma', 'Zm00001eb397730' => 'zma', 'Zm00001eb399750' => 'zma' ) $gf_id = 'HOM05D000959' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000959' ) $data_identifier = 'HOM05D000959' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 5, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 5, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 10, 'mbi' => (int) 3, 'mco' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 2, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 3, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 11, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399750' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000959', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '622', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p07100' => 'bna', 'A03p11720' => 'bna', 'A05p08300' => 'bna', 'A05p13380' => 'bna', 'A09p54130' => 'bna', 'A10p16690' => 'bna', 'A10p16700' => 'bna', 'A10p33390' => 'bna', 'Aa31LG10G16020' => 'aar', 'Aa31LG1G11810' => 'aar', 'Aa31LG1G11830' => 'aar', 'Aa31LG1G22510' => 'aar', 'Aa31LG5G4890' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5793' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2310' => 'aag', 'Actinidia08499' => 'ach', 'Actinidia11262' => 'ach', 'Actinidia23926' => 'ach', 'Actinidia34420' => 'ach', 'Actinidia36970' => 'ach', 'Ah.02g111220' => 'amhyb', 'Ah.15g097750' => 'amhyb', 'AL4G27500' => 'aly', 'AL6G11470' => 'aly', 'AL8G35950' => 'aly', 'AL8G35960' => 'aly', 'AL8G35970' => 'aly', 'Aqoxy1G00912' => 'aox', 'Aqoxy2G02253' => 'aox', 'Aqoxy2G02411' => 'aox', 'Aqoxy5G00485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BZ66YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K8ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM4FUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6BF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HFV7XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25JBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0YNNV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MAKK6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P70IT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP2Z6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V61LZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YWP64R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3S9AI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7PGHH' => 'arhy', 'AT2G32150' => 'ath', 'AT3G62040' => 'ath', 'AT5G02230' => 'ath', 'AT5G59480' => 'ath', 'AT5G59490' => 'ath', 'ATR0332G060' => 'atr', 'ATR0559G190' => 'atr', 'ATR0693G294' => 'atr', 'Atru.chr3.3975' => 'acertr', 'Atru.chr3.3976' => 'acertr', 'Atru.chr3.3977' => 'acertr', 'Atru.chr4.2498' => 'acertr', 'Atru.chr5.838' => 'acertr', 'Atru.chr8.1990' => 'acertr', 'Atru.chr8.1991' => 'acertr', 'Atru.chr8.1992' => 'acertr', 'AUR62001759' => 'cqu', 'AUR62009545' => 'cqu', 'AUR62010474' => 'cqu', 'AUR62025820' => 'cqu', 'AUR62030422' => 'cqu', 'AUR62033605' => 'cqu', 'AUR62038615' => 'cqu', 'AUR62041347' => 'cqu', 'BcaB01g04574' => 'bca', 'BcaB02g09263' => 'bca', 'BcaB02g10453' => 'bca', 'BcaB05g22513' => 'bca', 'BcaB08g36253' => 'bca', 'BcaB08g36254' => 'bca', 'BcaC01g06519' => 'bca', 'BcaC02g11889' => 'bca', 'BcaC03g14010' => 'bca', 'BcaC03g18439' => 'bca', 'BcaC04g19765' => 'bca', 'BcaC09g48432' => 'bca', 'BcaNung07302' => 'bca', 'BolC2t06040H' => 'bol', 'BolC2t07346H' => 'bol', 'BolC3t13817H' => 'bol', 'BolC4t22625H' => 'bol', 'BolC4t23297H' => 'bol', 'BolC8t51278H' => 'bol', 'BolC9t58050H' => 'bol', 'BolC9t58051H' => 'bol', 'BolC9t60163H' => 'bol', 'BraA02t04712Z' => 'bra', 'BraA02t05791Z' => 'bra', 'BraA03t10483Z' => 'bra', 'BraA05t19795Z' => 'bra', 'BraA05t20276Z' => 'bra', 'BraA09t40827Z' => 'bra', 'BraA10t43750Z' => 'bra', 'BraA10t43751Z' => 'bra', 'BraA10t45370Z' => 'bra', 'C02p00400' => 'bna', 'C02p12460' => 'bna', 'C03p13680' => 'bna', 'C04p10270' => 'bna', 'C04p17500' => 'bna', 'C08p37010' => 'bna', 'C09p51880' => 'bna', 'C09p51890' => 'bna', 'C09p74300' => 'bna', 'CAN.G179.26' => 'can', 'CAN.G3384.1' => 'can', 'CAN.G394.68' => 'can', 'CAN.G907.13' => 'can', 'CANSAT11G0012' => 'cansat', 'CANSAT25G1586' => 'cansat', 'CANSAT35G0735' => 'cansat', 'CANSAT54G0556' => 'cansat', 'CANSAT64G0356' => 'cansat', 'CANSAT78G2042' => 'cansat', 'CARHR125920' => 'chi', 'CARHR131910' => 'chi', 'CARHR172390' => 'chi', 'CARHR211140' => 'chi', 'CARHR285850' => 'chi', 'CARHR285860' => 'chi', 'Carub.0004s1347' => 'cru', 'Carub.0004s1960' => 'cru', 'Carub.0005s2880' => 'cru', 'Carub.0006s0107' => 'cru', 'Carub.0008s2015' => 'cru', 'Carub.0008s2016' => 'cru', 'Carub.0008s2017' => 'cru', 'Ca_01315_v3' => 'car', 'Ca_05063_v3' => 'car', 'Ca_10231_v3' => 'car', 'Ca_10913_v3' => 'car', 'Ca_19156_v3' => 'car', 'Ca_23644_v3' => 'car', 'Ca_26735_v3' => 'car', 'Cc01_g13130' => 'ccan', 'Cc02_g21690' => 'ccan', 'Cc03_g03600' => 'ccan', 'Cc06_g02510' => 'ccan', 'CDE02G1265' => 'cde', 'CDE05G0415' => 'cde', 'CDE08G1082' => 'cde', 'Cfa005780' => 'cfa', 'Cfa011522' => 'cfa', 'Cfa011523' => 'cfa', 'Cfa015627' => 'cfa', 'Cfa017359' => 'cfa', 'Ciclev10005687m.g' => 'ccl', 'Ciclev10012173m.g' => 'ccl', 'Ciclev10021621m.g' => 'ccl', 'Ciclev10028968m.g' => 'ccl', 'Ciclev10029907m.g' => 'ccl', 'CiPaw.01G164800' => 'cil', 'CiPaw.07G083700' => 'cil', 'CiPaw.07G127000' => 'cil', 'CiPaw.07G136900' => 'cil', 'CiPaw.08G081700' => 'cil', 'CiPaw.09G194600' => 'cil', 'CiPaw.10G146500' => 'cil', 'CiPaw.13G091500' => 'cil', 'CiPaw.13G091600' => 'cil', 'ClCG00G003390' => 'cla', 'ClCG01G007220' => 'cla', 'ClCG03G001370' => 'cla', 'ClCG04G008100' => 'cla', 'ClCG06G006110' => 'cla', 'ClCG06G006130' => 'cla', 'ClCG10G021210' => 'cla', 'COL.COLO4_07648' => 'col', 'COL.COLO4_07650' => 'col', 'COL.COLO4_07651' => 'col', 'COL.COLO4_14780' => 'col', 'COL.COLO4_18546' => 'col', 'COL.COLO4_18547' => 'col', 'COL.COLO4_23103' => 'col', 'COL.COLO4_30419' => 'col', 'COL.COLO4_34232' => 'col', 'Cpa.g.sc169.20' => 'cpa', 'Cpa.g.sc57.45' => 'cpa', 'Cpa.g.sc58.124' => 'cpa', 'Cpa.g.sc58.125' => 'cpa', 'Cpa.g.sc81.118' => 'cpa', 'Cpa.g.sc81.119' => 'cpa', 'Cre12.g524700' => 'cre', 'CsaV3_1G034430' => 'csa', 'CsaV3_1G034440' => 'csa', 'CsaV3_1G034450' => 'csa', 'CsaV3_3G034830' => 'csa', 'CsaV3_4G025090' => 'csa', 'CsaV3_5G018660' => 'csa', 'CsaV3_6G038160' => 'csa', 'CSS0003447' => 'camsi', 'CSS0017840' => 'camsi', 'CSS0019260' => 'camsi', 'CSS0040375' => 'camsi', 'CSS0042533' => 'camsi', 'DCAR_005960' => 'dca', 'DCAR_012104' => 'dca', 'DCAR_012105' => 'dca', 'DCAR_012293' => 'dca', 'DCAR_015632' => 'dca', 'DCAR_024602' => 'dca', 'DCAR_028752' => 'dca', 'Dinv06261' => 'din', 'Dinv13982' => 'din', 'Dinv17029' => 'din', 'Dinv18463' => 'din', 'Dinv33181' => 'din', 'Dinv35585' => 'din', 'Dinv37161' => 'din', 'Dinv42977' => 'din', 'Dinv43122' => 'din', 'Dinv44517' => 'din', 'Duzib093G0256' => 'dzi', 'Duzib106G1254' => 'dzi', 'Duzib128G1789' => 'dzi', 'Duzib133G0633' => 'dzi', 'Duzib138G0510' => 'dzi', 'Duzib150G1084' => 'dzi', 'Duzib168G0488' => 'dzi', 'Duzib168G1523' => 'dzi', 'Duzib170G0133' => 'dzi', 'ECA234G1433' => 'eca', 'ECA236G1432' => 'eca', 'ECA236G2256' => 'eca', 'ECA236G2365' => 'eca', 'ECA236G4830' => 'eca', 'ECA248G1505' => 'eca', 'EL10Ac3g06431' => 'bvu', 'EL10Ac5g12577' => 'bvu', 'EL10Ac6g13533' => 'bvu', 'EL10Ac7g16045' => 'bvu', 'Eucgr.A01281' => 'egr', 'Eucgr.B02326' => 'egr', 'Eucgr.H03532' => 'egr', 'Eucgr.K00553' => 'egr', 'Eucgr.K03116' => 'egr', 'FAN02G3963' => 'fan', 'FAN05G0438' => 'fan', 'FAN09G2434' => 'fan', 'FAN12G3984' => 'fan', 'FAN14G0798' => 'fan', 'FAN17G0652' => 'fan', 'FAN19G1988' => 'fan', 'FAN22G0632' => 'fan', 'FAN23G0387' => 'fan', 'FAN26G1323' => 'fan', 'FAN28G0666' => 'fan', 'FvH4_1g26080' => 'fve', 'FvH4_3g36780' => 'fve', 'FvH4_4g15270' => 'fve', 'FvH4_6g13490' => 'fve', 'Glyma.01G098700' => 'gma', 'Glyma.03G065900' => 'gma', 'Glyma.03G073754' => 'gma', 'Glyma.03G073758' => 'gma', 'Glyma.03G083200' => 'gma', 'Glyma.03G225500' => 'gma', 'Glyma.05G037766' => 'gma', 'Glyma.07G133500' => 'gma', 'Glyma.10G139400' => 'gma', 'Glyma.10G248900' => 'gma', 'Glyma.11G137800' => 'gma', 'Glyma.12G061300' => 'gma', 'Glyma.13G337900' => 'gma', 'Glyma.15G036600' => 'gma', 'Glyma.18G182800' => 'gma', 'Glyma.19G222500' => 'gma', 'Glyma.20G144800' => 'gma', 'Gohir.A01G222000' => 'ghi', 'Gohir.A03G044000' => 'ghi', 'Gohir.A03G044100' => 'ghi', 'Gohir.A04G083100' => 'ghi', 'Gohir.A07G127200' => 'ghi', 'Gohir.A07G132400' => 'ghi', 'Gohir.A08G000700' => 'ghi', 'Gohir.A11G327300' => 'ghi', 'Gohir.D01G211500' => 'ghi', 'Gohir.D03G123400' => 'ghi', 'Gohir.D03G123500' => 'ghi', 'Gohir.D04G121800' => 'ghi', 'Gohir.D07G131500' => 'ghi', 'Gohir.D07G136600' => 'ghi', 'Gohir.D08G011600' => 'ghi', 'Gohir.D11G346200' => 'ghi', 'Gorai.001G142800' => 'gra', 'Gorai.001G148700' => 'gra', 'Gorai.002G257300' => 'gra', 'Gorai.003G130000' => 'gra', 'Gorai.003G130100' => 'gra', 'Gorai.004G005300' => 'gra', 'Gorai.007G376500' => 'gra', 'Gorai.012G104700' => 'gra', 'GSVIVG01017946001' => 'vvi', 'GSVIVG01024928001' => 'vvi', 'GSVIVG01028227001' => 'vvi', 'GSVIVG01034151001' => 'vvi', 'HanXRQChr05g0135031' => 'han', 'HanXRQChr05g0135041' => 'han', 'HanXRQChr05g0140021' => 'han', 'HanXRQChr06g0178981' => 'han', 'HanXRQChr07g0188251' => 'han', 'HanXRQChr08g0235311' => 'han', 'HanXRQChr09g0271011' => 'han', 'HanXRQChr10g0293321' => 'han', 'HanXRQChr13g0388171' => 'han', 'Haze_00916' => 'cav', 'Haze_05063' => 'cav', 'Haze_20814' => 'cav', 'Haze_24128' => 'cav', 'Hma1.2p1_0745F.1_g212010' => 'hma', 'Hma1.2p1_0757F.1_g213260' => 'hma', 'Hma1.2p1_0936F.1_g238840' => 'hma', 'Hma1.2p1_1735F.1_g299890' => 'hma', 'Hma1.2p1_1861F.1_g305685' => 'hma', 'HPP92_003397' => 'vpl', 'HPP92_012597' => 'vpl', 'HPP92_015520' => 'vpl', 'HPP92_015539' => 'vpl', 'HPP92_020373' => 'vpl', 'Hund04938' => 'sun', 'Hund10677' => 'sun', 'Hund11033' => 'sun', 'Hund12155' => 'sun', 'Lalb_Chr01g0022551' => 'lal', 'Lalb_Chr03g0042341' => 'lal', 'Lalb_Chr07g0192931' => 'lal', 'Lalb_Chr12g0209551' => 'lal', 'Lalb_Chr19g0125251' => 'lal', 'Lalb_Chr19g0137891' => 'lal', 'Lalb_Chr21g0304641' => 'lal', 'Lalb_Chr21g0309881' => 'lal', 'Lj1A5T12' => 'lonja', 'Lj1C148G10' => 'lonja', 'Lj2A93T83' => 'lonja', 'Lj3A738G68' => 'lonja', 'Lj3C966T1' => 'lonja', 'Lj3g0018958' => 'lja', 'Lj3g0021831' => 'lja', 'Lj3g0025443' => 'lja', 'Lj4g0026809' => 'lja', 'Lj5g0012558' => 'lja', 'Lj5g0021586' => 'lja', 'Lsat_1_v5_gn_5_156840' => 'lsa', 'Lsat_1_v5_gn_8_73460' => 'lsa', 'Lsat_1_v5_gn_8_73481' => 'lsa', 'Lsat_1_v5_gn_9_31601' => 'lsa', 'Lsat_1_v5_gn_9_77320' => 'lsa', 'Manes.01G171300' => 'mes', 'Manes.01G171400' => 'mes', 'Manes.01G236100' => 'mes', 'Manes.02G130500' => 'mes', 'Manes.02G130600' => 'mes', 'Manes.03G180200' => 'mes', 'Manes.05G007000' => 'mes', 'Manes.08G084400' => 'mes', 'Manes.09G092600' => 'mes', 'Manes.15G027900' => 'mes', 'MBI04_g40948_MAGBIO' => 'mbi', 'MBI14_g12123_MAGBIO' => 'mbi', 'MBI18_g28915_MAGBIO' => 'mbi', 'MCO09G053' => 'mco', 'MCO11G782' => 'mco', 'MCO15G215' => 'mco', 'MD03G1088500' => 'mdo', 'MD03G1088600' => 'mdo', 'MD04G1130800' => 'mdo', 'MD09G1291700' => 'mdo', 'MD11G1097500' => 'mdo', 'MD11G1097600' => 'mdo', 'MD12G1143900' => 'mdo', 'MD13G1191400' => 'mdo', 'MD16G1191500' => 'mdo', 'Medtr1g085570' => 'mtr', 'Medtr1g104610' => 'mtr', 'Medtr2g097520' => 'mtr', 'Medtr4g021800' => 'mtr', 'Medtr4g021825' => 'mtr', 'Medtr4g064270' => 'mtr', 'Medtr4g064380' => 'mtr', 'Medtr7g062150' => 'mtr', 'MELO3C003138.2' => 'cme', 'MELO3C005187.2' => 'cme', 'MELO3C009252.2' => 'cme', 'MELO3C014481.2' => 'cme', 'MELO3C020616.2' => 'cme', 'MELO3C020617.2' => 'cme', 'MELO3C020618.2' => 'cme', 'Migut.G00328' => 'egut', 'Migut.J00320' => 'egut', 'Migut.L01000' => 'egut', 'Migut.L01953' => 'egut', 'MSTRG.10253' => 'ama', 'MSTRG.19077' => 'ama', 'MSTRG.26780' => 'ama', 'MSTRG.4023' => 'ama', 'MSTRG.5655' => 'ama', 'MSTRG.9992' => 'ama', 'Nitab4.5_0000043g0310' => 'nta', 'Nitab4.5_0000463g0080' => 'nta', 'Nitab4.5_0000705g0170' => 'nta', 'Nitab4.5_0001326g0060' => 'nta', 'Nitab4.5_0001628g0030' => 'nta', 'Nitab4.5_0002103g0110' => 'nta', 'Nitab4.5_0002946g0030' => 'nta', 'Nitab4.5_0004639g0030' => 'nta', 'Nn2g11149' => 'nnu', 'Nn2g13389' => 'nnu', 'Nn4g25326' => 'nnu', 'Nn4g26290' => 'nnu', 'Nn5g29865' => 'nnu', 'Oeu004163.1' => 'oeu', 'Oeu006901.1' => 'oeu', 'Oeu010096.1' => 'oeu', 'Oeu024340.1' => 'oeu', 'Oeu048369.1' => 'oeu', 'Os01g0973000' => 'osa', 'Os03g0273800' => 'osa', 'Os03g0701200' => 'osa', 'Os03g0834050' => 'osa', 'Os07g0634400' => 'osa', 'Peaxi162Scf00092g01414' => 'pax', 'Peaxi162Scf00165g00818' => 'pax', 'Peaxi162Scf00309g00516' => 'pax', 'Peaxi162Scf00774g00218' => 'pax', 'PGR004G1824' => 'pgr', 'PGR004G2606' => 'pgr', 'PGR031G2716' => 'pgr', 'PGR102G2460' => 'pgr', 'PGR142G2599' => 'pgr', 'PGSC0003DMG400000843' => 'stu', 'PGSC0003DMG400008829' => 'stu', 'PGSC0003DMG400030418' => 'stu', 'PGSC0003DMG400031834' => 'stu', 'PGSC0003DMG401028300' => 'stu', 'PGSC0003DMG402028300' => 'stu', 'Phvul.001G219300' => 'pvu', 'Phvul.007G056000' => 'pvu', 'Phvul.007G208000' => 'pvu', 'Phvul.008G119500' => 'pvu', 'Phvul.010G011200' => 'pvu', 'Phvul.010G014800' => 'pvu', 'Phvul.011G062900' => 'pvu', 'Phvul.L007043' => 'pvu', 'Potri.001G242300' => 'ptr', 'Potri.002G185300' => 'ptr', 'Potri.006G086900' => 'ptr', 'Potri.008G151700' => 'ptr', 'Potri.009G033500' => 'ptr', 'Potri.010G089300' => 'ptr', 'Potri.014G110800' => 'ptr', 'Pp3c27_8130' => 'ppa', 'Pp3c6_27410' => 'ppa', 'PRCOL_00001659' => 'pco', 'PRCOL_00001927' => 'pco', 'PRCOL_00003649' => 'pco', 'Prupe.1G011600' => 'ppe', 'Prupe.3G000800' => 'ppe', 'Prupe.3G001100' => 'ppe', 'Prupe.6G072700' => 'ppe', 'Prupe.6G072800' => 'ppe', 'Prupe.6G257300' => 'ppe', 'Prupe.8G033000' => 'ppe', 'Psat0s2633g0080' => 'psa', 'Psat0s3396g0080' => 'psa', 'Psat0s3396g0200' => 'psa', 'Psat3g139080' => 'psa', 'Psat5g285080' => 'psa', 'Psat6g157760' => 'psa', 'Psat6g208440' => 'psa', 'Psat7g215320' => 'psa', 'Psat7g215400' => 'psa', 'Psat7g235600' => 'psa', 'Psat7g235760' => 'psa', 'PSO063G4603' => 'pso', 'PSO210G0182' => 'pso', 'PSO210G0196' => 'pso', 'PSO339G0394' => 'pso', 'PSO339G4127' => 'pso', 'PSO513G0064' => 'pso', 'PSO761G0079' => 'pso', 'QL01p031003' => 'qlo', 'QL01p031078' => 'qlo', 'QL06p003004' => 'qlo', 'QL07p048731' => 'qlo', 'QL09p037427' => 'qlo', 'RcHm_v2.0_Chr3g0466361' => 'rch', 'RcHm_v2.0_Chr3g0485571' => 'rch', 'RcHm_v2.0_Chr4g0416551' => 'rch', 'RcHm_v2.0_Chr5g0065831' => 'rch', 'Rhsim01G0230500' => 'rsi', 'Rhsim05G0194000' => 'rsi', 'Rhsim08G0250400' => 'rsi', 'Sabra02G0131000' => 'sbr', 'Sabra06G0066300' => 'sbr', 'Sabra08G0115500' => 'sbr', 'Sabra09G0023900' => 'sbr', 'Sabra10G0054000' => 'sbr', 'Sabra14G0081500' => 'sbr', 'Sabra16G0147100' => 'sbr', 'SalBow2G2957' => 'sbo', 'SalBow4G3320' => 'sbo', 'SalBow8G1894' => 'sbo', 'Sc07g0007950' => 'sci', 'Sc12g0001360' => 'sci', 'Sc13g0004330' => 'sci', 'Sc20g0005010' => 'sci', 'Sed0000361' => 'sed', 'Sed0001706' => 'sed', 'Sed0002422' => 'sed', 'Sed0004029' => 'sed', 'Sed0004602' => 'sed', 'Sed0004943' => 'sed', 'Sed0008646' => 'sed', 'Sed0023313' => 'sed', 'Sed0024843' => 'sed', 'SEGI_00081' => 'sgi', 'SEGI_00947' => 'sgi', 'SEGI_04046' => 'sgi', 'SEGI_06880' => 'sgi', 'SEGI_09736' => 'sgi', 'SEGI_12741' => 'sgi', 'SEGI_14530' => 'sgi', 'SEGI_20705' => 'sgi', 'SEGI_26088' => 'sgi', 'SEGI_28323' => 'sgi', 'SEGI_33343' => 'sgi', 'SGA_v2.0_scaffold126G33775' => 'sas', 'SGA_v2.0_scaffold2G01337' => 'sas', 'SGA_v2.0_scaffold38G15006' => 'sas', 'SGA_v2.0_scaffold39G15264' => 'sas', 'SGA_v2.0_scaffold453G51880' => 'sas', 'SHI12696' => 'shi', 'SMO367G1096' => 'smo', 'Solyc01g068630.3' => 'sly', 'Solyc05g011880.3' => 'sly', 'Solyc06g076300.3' => 'sly', 'Solyc09g010940.4' => 'sly', 'Solyc09g075890.3' => 'sly', 'Sopen01g030560' => 'spe', 'Sopen05g006630' => 'spe', 'Sopen06g032720' => 'spe', 'Sopen09g005660' => 'spe', 'Sopen09g030690' => 'spe', 'Sp4g14540' => 'spa', 'Sp4g20030' => 'spa', 'Sp5g01320' => 'spa', 'Sp6g21170' => 'spa', 'Sp6g21180' => 'spa', 'Sp6g21190' => 'spa', 'Sp6g40220' => 'spa', 'TAR362G0122' => 'tar', 'TAR362G1338' => 'tar', 'TAR369G0590' => 'tar', 'TAR371G0824' => 'tar', 'TAR622G1429' => 'tar', 'TAR623G0734' => 'tar', 'TAR625G0441' => 'tar', 'TAR629G0976' => 'tar', 'TAR633G1195' => 'tar', 'TAR636G2660' => 'tar', 'THA.LOC104799440' => 'tha', 'THA.LOC104800966' => 'tha', 'THA.LOC104806559' => 'tha', 'THA.LOC104810765' => 'tha', 'THA.LOC104816266' => 'tha', 'THA.LOC104817419' => 'tha', 'THA.LOC104827021' => 'tha', 'Thecc.01G327400' => 'tca', 'Thecc.04G229200' => 'tca', 'Thecc.05G037400' => 'tca', 'Thecc.09G318600' => 'tca', 'Thecc.09G318700' => 'tca', 'Thhalv10006238m.g' => 'esa', 'Thhalv10014321m.g' => 'esa', 'Thhalv10014335m.g' => 'esa', 'Thhalv10015826m.g' => 'esa', 'Thhalv10017107m.g' => 'esa', 'Thhalv10017180m.g' => 'esa', 'Thhalv10029339m.g' => 'esa', 'TPR.G1699' => 'tpr', 'TPR.G23609' => 'tpr', 'TPR.G3081' => 'tpr', 'TPR.G40397' => 'tpr', 'TPR.G5522' => 'tpr', 'TPR.G5618' => 'tpr', 'TPR.G5626' => 'tpr', 'TWI09G1632' => 'twi', 'TWI23G1230' => 'twi', 'TWI53G1064' => 'twi', 'TWI59G0751' => 'twi', 'TWI74G0947' => 'twi', 'TWI77G0337' => 'twi', 'TWI79G1254' => 'twi', 'unitig_0.g2341' => 'ugi', 'unitig_26.g10006' => 'ugi', 'unitig_26.g10008' => 'ugi', 'unitig_26.g9192' => 'ugi', 'vmacro14547' => 'vma', 'vmacro15333' => 'vma', 'vmacro18743' => 'vma', 'vmacro20166' => 'vma', 'VMungo0331G0523' => 'vmu', 'VMungo0331G1202' => 'vmu', 'VMungo0720G1228' => 'vmu', 'VMungo0720G1514' => 'vmu', 'VMungo1080G0169' => 'vmu', 'VMungo1127G1475' => 'vmu', 'VMungo1383G1208' => 'vmu', 'VMungo1383G1698' => 'vmu', 'Zm00001eb012270' => 'zma', 'Zm00001eb054100' => 'zma', 'Zm00001eb063350' => 'zma', 'Zm00001eb328560' => 'zma', 'Zm00001eb342820' => 'zma', 'Zm00001eb362210' => 'zma', 'Zm00001eb397730' => 'zma', 'Zm00001eb399750' => 'zma' ), 'gf_id' => 'HOM05D000959', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000959' ), 'data_identifier' => 'HOM05D000959', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000959', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '622', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p07100' => 'bna', 'A03p11720' => 'bna', 'A05p08300' => 'bna', 'A05p13380' => 'bna', 'A09p54130' => 'bna', 'A10p16690' => 'bna', 'A10p16700' => 'bna', 'A10p33390' => 'bna', 'Aa31LG10G16020' => 'aar', 'Aa31LG1G11810' => 'aar', 'Aa31LG1G11830' => 'aar', 'Aa31LG1G22510' => 'aar', 'Aa31LG5G4890' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5793' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2310' => 'aag', 'Actinidia08499' => 'ach', 'Actinidia11262' => 'ach', 'Actinidia23926' => 'ach', 'Actinidia34420' => 'ach', 'Actinidia36970' => 'ach', 'Ah.02g111220' => 'amhyb', 'Ah.15g097750' => 'amhyb', 'AL4G27500' => 'aly', 'AL6G11470' => 'aly', 'AL8G35950' => 'aly', 'AL8G35960' => 'aly', 'AL8G35970' => 'aly', 'Aqoxy1G00912' => 'aox', 'Aqoxy2G02253' => 'aox', 'Aqoxy2G02411' => 'aox', 'Aqoxy5G00485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BZ66YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K8ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM4FUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6BF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HFV7XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25JBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0YNNV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MAKK6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P70IT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP2Z6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V61LZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YWP64R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3S9AI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7PGHH' => 'arhy', 'AT2G32150' => 'ath', 'AT3G62040' => 'ath', 'AT5G02230' => 'ath', 'AT5G59480' => 'ath', 'AT5G59490' => 'ath', 'ATR0332G060' => 'atr', 'ATR0559G190' => 'atr', 'ATR0693G294' => 'atr', 'Atru.chr3.3975' => 'acertr', 'Atru.chr3.3976' => 'acertr', 'Atru.chr3.3977' => 'acertr', 'Atru.chr4.2498' => 'acertr', 'Atru.chr5.838' => 'acertr', 'Atru.chr8.1990' => 'acertr', 'Atru.chr8.1991' => 'acertr', 'Atru.chr8.1992' => 'acertr', 'AUR62001759' => 'cqu', 'AUR62009545' => 'cqu', 'AUR62010474' => 'cqu', 'AUR62025820' => 'cqu', 'AUR62030422' => 'cqu', 'AUR62033605' => 'cqu', 'AUR62038615' => 'cqu', 'AUR62041347' => 'cqu', 'BcaB01g04574' => 'bca', 'BcaB02g09263' => 'bca', 'BcaB02g10453' => 'bca', 'BcaB05g22513' => 'bca', 'BcaB08g36253' => 'bca', 'BcaB08g36254' => 'bca', 'BcaC01g06519' => 'bca', 'BcaC02g11889' => 'bca', 'BcaC03g14010' => 'bca', 'BcaC03g18439' => 'bca', 'BcaC04g19765' => 'bca', 'BcaC09g48432' => 'bca', 'BcaNung07302' => 'bca', 'BolC2t06040H' => 'bol', 'BolC2t07346H' => 'bol', 'BolC3t13817H' => 'bol', 'BolC4t22625H' => 'bol', 'BolC4t23297H' => 'bol', 'BolC8t51278H' => 'bol', 'BolC9t58050H' => 'bol', 'BolC9t58051H' => 'bol', 'BolC9t60163H' => 'bol', 'BraA02t04712Z' => 'bra', 'BraA02t05791Z' => 'bra', 'BraA03t10483Z' => 'bra', 'BraA05t19795Z' => 'bra', 'BraA05t20276Z' => 'bra', 'BraA09t40827Z' => 'bra', 'BraA10t43750Z' => 'bra', 'BraA10t43751Z' => 'bra', 'BraA10t45370Z' => 'bra', 'C02p00400' => 'bna', 'C02p12460' => 'bna', 'C03p13680' => 'bna', 'C04p10270' => 'bna', 'C04p17500' => 'bna', 'C08p37010' => 'bna', 'C09p51880' => 'bna', 'C09p51890' => 'bna', 'C09p74300' => 'bna', 'CAN.G179.26' => 'can', 'CAN.G3384.1' => 'can', 'CAN.G394.68' => 'can', 'CAN.G907.13' => 'can', 'CANSAT11G0012' => 'cansat', 'CANSAT25G1586' => 'cansat', 'CANSAT35G0735' => 'cansat', 'CANSAT54G0556' => 'cansat', 'CANSAT64G0356' => 'cansat', 'CANSAT78G2042' => 'cansat', 'CARHR125920' => 'chi', 'CARHR131910' => 'chi', 'CARHR172390' => 'chi', 'CARHR211140' => 'chi', 'CARHR285850' => 'chi', 'CARHR285860' => 'chi', 'Carub.0004s1347' => 'cru', 'Carub.0004s1960' => 'cru', 'Carub.0005s2880' => 'cru', 'Carub.0006s0107' => 'cru', 'Carub.0008s2015' => 'cru', 'Carub.0008s2016' => 'cru', 'Carub.0008s2017' => 'cru', 'Ca_01315_v3' => 'car', 'Ca_05063_v3' => 'car', 'Ca_10231_v3' => 'car', 'Ca_10913_v3' => 'car', 'Ca_19156_v3' => 'car', 'Ca_23644_v3' => 'car', 'Ca_26735_v3' => 'car', 'Cc01_g13130' => 'ccan', 'Cc02_g21690' => 'ccan', 'Cc03_g03600' => 'ccan', 'Cc06_g02510' => 'ccan', 'CDE02G1265' => 'cde', 'CDE05G0415' => 'cde', 'CDE08G1082' => 'cde', 'Cfa005780' => 'cfa', 'Cfa011522' => 'cfa', 'Cfa011523' => 'cfa', 'Cfa015627' => 'cfa', 'Cfa017359' => 'cfa', 'Ciclev10005687m.g' => 'ccl', 'Ciclev10012173m.g' => 'ccl', 'Ciclev10021621m.g' => 'ccl', 'Ciclev10028968m.g' => 'ccl', 'Ciclev10029907m.g' => 'ccl', 'CiPaw.01G164800' => 'cil', 'CiPaw.07G083700' => 'cil', 'CiPaw.07G127000' => 'cil', 'CiPaw.07G136900' => 'cil', 'CiPaw.08G081700' => 'cil', 'CiPaw.09G194600' => 'cil', 'CiPaw.10G146500' => 'cil', 'CiPaw.13G091500' => 'cil', 'CiPaw.13G091600' => 'cil', 'ClCG00G003390' => 'cla', 'ClCG01G007220' => 'cla', 'ClCG03G001370' => 'cla', 'ClCG04G008100' => 'cla', 'ClCG06G006110' => 'cla', 'ClCG06G006130' => 'cla', 'ClCG10G021210' => 'cla', 'COL.COLO4_07648' => 'col', 'COL.COLO4_07650' => 'col', 'COL.COLO4_07651' => 'col', 'COL.COLO4_14780' => 'col', 'COL.COLO4_18546' => 'col', 'COL.COLO4_18547' => 'col', 'COL.COLO4_23103' => 'col', 'COL.COLO4_30419' => 'col', 'COL.COLO4_34232' => 'col', 'Cpa.g.sc169.20' => 'cpa', 'Cpa.g.sc57.45' => 'cpa', 'Cpa.g.sc58.124' => 'cpa', 'Cpa.g.sc58.125' => 'cpa', 'Cpa.g.sc81.118' => 'cpa', 'Cpa.g.sc81.119' => 'cpa', 'Cre12.g524700' => 'cre', 'CsaV3_1G034430' => 'csa', 'CsaV3_1G034440' => 'csa', 'CsaV3_1G034450' => 'csa', 'CsaV3_3G034830' => 'csa', 'CsaV3_4G025090' => 'csa', 'CsaV3_5G018660' => 'csa', 'CsaV3_6G038160' => 'csa', 'CSS0003447' => 'camsi', 'CSS0017840' => 'camsi', 'CSS0019260' => 'camsi', 'CSS0040375' => 'camsi', 'CSS0042533' => 'camsi', 'DCAR_005960' => 'dca', 'DCAR_012104' => 'dca', 'DCAR_012105' => 'dca', 'DCAR_012293' => 'dca', 'DCAR_015632' => 'dca', 'DCAR_024602' => 'dca', 'DCAR_028752' => 'dca', 'Dinv06261' => 'din', 'Dinv13982' => 'din', 'Dinv17029' => 'din', 'Dinv18463' => 'din', 'Dinv33181' => 'din', 'Dinv35585' => 'din', 'Dinv37161' => 'din', 'Dinv42977' => 'din', 'Dinv43122' => 'din', 'Dinv44517' => 'din', 'Duzib093G0256' => 'dzi', 'Duzib106G1254' => 'dzi', 'Duzib128G1789' => 'dzi', 'Duzib133G0633' => 'dzi', 'Duzib138G0510' => 'dzi', 'Duzib150G1084' => 'dzi', 'Duzib168G0488' => 'dzi', 'Duzib168G1523' => 'dzi', 'Duzib170G0133' => 'dzi', 'ECA234G1433' => 'eca', 'ECA236G1432' => 'eca', 'ECA236G2256' => 'eca', 'ECA236G2365' => 'eca', 'ECA236G4830' => 'eca', 'ECA248G1505' => 'eca', 'EL10Ac3g06431' => 'bvu', 'EL10Ac5g12577' => 'bvu', 'EL10Ac6g13533' => 'bvu', 'EL10Ac7g16045' => 'bvu', 'Eucgr.A01281' => 'egr', 'Eucgr.B02326' => 'egr', 'Eucgr.H03532' => 'egr', 'Eucgr.K00553' => 'egr', 'Eucgr.K03116' => 'egr', 'FAN02G3963' => 'fan', 'FAN05G0438' => 'fan', 'FAN09G2434' => 'fan', 'FAN12G3984' => 'fan', 'FAN14G0798' => 'fan', 'FAN17G0652' => 'fan', 'FAN19G1988' => 'fan', 'FAN22G0632' => 'fan', 'FAN23G0387' => 'fan', 'FAN26G1323' => 'fan', 'FAN28G0666' => 'fan', 'FvH4_1g26080' => 'fve', 'FvH4_3g36780' => 'fve', 'FvH4_4g15270' => 'fve', 'FvH4_6g13490' => 'fve', 'Glyma.01G098700' => 'gma', 'Glyma.03G065900' => 'gma', 'Glyma.03G073754' => 'gma', 'Glyma.03G073758' => 'gma', 'Glyma.03G083200' => 'gma', 'Glyma.03G225500' => 'gma', 'Glyma.05G037766' => 'gma', 'Glyma.07G133500' => 'gma', 'Glyma.10G139400' => 'gma', 'Glyma.10G248900' => 'gma', 'Glyma.11G137800' => 'gma', 'Glyma.12G061300' => 'gma', 'Glyma.13G337900' => 'gma', 'Glyma.15G036600' => 'gma', 'Glyma.18G182800' => 'gma', 'Glyma.19G222500' => 'gma', 'Glyma.20G144800' => 'gma', 'Gohir.A01G222000' => 'ghi', 'Gohir.A03G044000' => 'ghi', 'Gohir.A03G044100' => 'ghi', 'Gohir.A04G083100' => 'ghi', 'Gohir.A07G127200' => 'ghi', 'Gohir.A07G132400' => 'ghi', 'Gohir.A08G000700' => 'ghi', 'Gohir.A11G327300' => 'ghi', 'Gohir.D01G211500' => 'ghi', 'Gohir.D03G123400' => 'ghi', 'Gohir.D03G123500' => 'ghi', 'Gohir.D04G121800' => 'ghi', 'Gohir.D07G131500' => 'ghi', 'Gohir.D07G136600' => 'ghi', 'Gohir.D08G011600' => 'ghi', 'Gohir.D11G346200' => 'ghi', 'Gorai.001G142800' => 'gra', 'Gorai.001G148700' => 'gra', 'Gorai.002G257300' => 'gra', 'Gorai.003G130000' => 'gra', 'Gorai.003G130100' => 'gra', 'Gorai.004G005300' => 'gra', 'Gorai.007G376500' => 'gra', 'Gorai.012G104700' => 'gra', 'GSVIVG01017946001' => 'vvi', 'GSVIVG01024928001' => 'vvi', 'GSVIVG01028227001' => 'vvi', 'GSVIVG01034151001' => 'vvi', 'HanXRQChr05g0135031' => 'han', 'HanXRQChr05g0135041' => 'han', 'HanXRQChr05g0140021' => 'han', 'HanXRQChr06g0178981' => 'han', 'HanXRQChr07g0188251' => 'han', 'HanXRQChr08g0235311' => 'han', 'HanXRQChr09g0271011' => 'han', 'HanXRQChr10g0293321' => 'han', 'HanXRQChr13g0388171' => 'han', 'Haze_00916' => 'cav', 'Haze_05063' => 'cav', 'Haze_20814' => 'cav', 'Haze_24128' => 'cav', 'Hma1.2p1_0745F.1_g212010' => 'hma', 'Hma1.2p1_0757F.1_g213260' => 'hma', 'Hma1.2p1_0936F.1_g238840' => 'hma', 'Hma1.2p1_1735F.1_g299890' => 'hma', 'Hma1.2p1_1861F.1_g305685' => 'hma', 'HPP92_003397' => 'vpl', 'HPP92_012597' => 'vpl', 'HPP92_015520' => 'vpl', 'HPP92_015539' => 'vpl', 'HPP92_020373' => 'vpl', 'Hund04938' => 'sun', 'Hund10677' => 'sun', 'Hund11033' => 'sun', 'Hund12155' => 'sun', 'Lalb_Chr01g0022551' => 'lal', 'Lalb_Chr03g0042341' => 'lal', 'Lalb_Chr07g0192931' => 'lal', 'Lalb_Chr12g0209551' => 'lal', 'Lalb_Chr19g0125251' => 'lal', 'Lalb_Chr19g0137891' => 'lal', 'Lalb_Chr21g0304641' => 'lal', 'Lalb_Chr21g0309881' => 'lal', 'Lj1A5T12' => 'lonja', 'Lj1C148G10' => 'lonja', 'Lj2A93T83' => 'lonja', 'Lj3A738G68' => 'lonja', 'Lj3C966T1' => 'lonja', 'Lj3g0018958' => 'lja', 'Lj3g0021831' => 'lja', 'Lj3g0025443' => 'lja', 'Lj4g0026809' => 'lja', 'Lj5g0012558' => 'lja', 'Lj5g0021586' => 'lja', 'Lsat_1_v5_gn_5_156840' => 'lsa', 'Lsat_1_v5_gn_8_73460' => 'lsa', 'Lsat_1_v5_gn_8_73481' => 'lsa', 'Lsat_1_v5_gn_9_31601' => 'lsa', 'Lsat_1_v5_gn_9_77320' => 'lsa', 'Manes.01G171300' => 'mes', 'Manes.01G171400' => 'mes', 'Manes.01G236100' => 'mes', 'Manes.02G130500' => 'mes', 'Manes.02G130600' => 'mes', 'Manes.03G180200' => 'mes', 'Manes.05G007000' => 'mes', 'Manes.08G084400' => 'mes', 'Manes.09G092600' => 'mes', 'Manes.15G027900' => 'mes', 'MBI04_g40948_MAGBIO' => 'mbi', 'MBI14_g12123_MAGBIO' => 'mbi', 'MBI18_g28915_MAGBIO' => 'mbi', 'MCO09G053' => 'mco', 'MCO11G782' => 'mco', 'MCO15G215' => 'mco', 'MD03G1088500' => 'mdo', 'MD03G1088600' => 'mdo', 'MD04G1130800' => 'mdo', 'MD09G1291700' => 'mdo', 'MD11G1097500' => 'mdo', 'MD11G1097600' => 'mdo', 'MD12G1143900' => 'mdo', 'MD13G1191400' => 'mdo', 'MD16G1191500' => 'mdo', 'Medtr1g085570' => 'mtr', 'Medtr1g104610' => 'mtr', 'Medtr2g097520' => 'mtr', 'Medtr4g021800' => 'mtr', 'Medtr4g021825' => 'mtr', 'Medtr4g064270' => 'mtr', 'Medtr4g064380' => 'mtr', 'Medtr7g062150' => 'mtr', 'MELO3C003138.2' => 'cme', 'MELO3C005187.2' => 'cme', 'MELO3C009252.2' => 'cme', 'MELO3C014481.2' => 'cme', 'MELO3C020616.2' => 'cme', 'MELO3C020617.2' => 'cme', 'MELO3C020618.2' => 'cme', 'Migut.G00328' => 'egut', 'Migut.J00320' => 'egut', 'Migut.L01000' => 'egut', 'Migut.L01953' => 'egut', 'MSTRG.10253' => 'ama', 'MSTRG.19077' => 'ama', 'MSTRG.26780' => 'ama', 'MSTRG.4023' => 'ama', 'MSTRG.5655' => 'ama', 'MSTRG.9992' => 'ama', 'Nitab4.5_0000043g0310' => 'nta', 'Nitab4.5_0000463g0080' => 'nta', 'Nitab4.5_0000705g0170' => 'nta', 'Nitab4.5_0001326g0060' => 'nta', 'Nitab4.5_0001628g0030' => 'nta', 'Nitab4.5_0002103g0110' => 'nta', 'Nitab4.5_0002946g0030' => 'nta', 'Nitab4.5_0004639g0030' => 'nta', 'Nn2g11149' => 'nnu', 'Nn2g13389' => 'nnu', 'Nn4g25326' => 'nnu', 'Nn4g26290' => 'nnu', 'Nn5g29865' => 'nnu', 'Oeu004163.1' => 'oeu', 'Oeu006901.1' => 'oeu', 'Oeu010096.1' => 'oeu', 'Oeu024340.1' => 'oeu', 'Oeu048369.1' => 'oeu', 'Os01g0973000' => 'osa', 'Os03g0273800' => 'osa', 'Os03g0701200' => 'osa', 'Os03g0834050' => 'osa', 'Os07g0634400' => 'osa', 'Peaxi162Scf00092g01414' => 'pax', 'Peaxi162Scf00165g00818' => 'pax', 'Peaxi162Scf00309g00516' => 'pax', 'Peaxi162Scf00774g00218' => 'pax', 'PGR004G1824' => 'pgr', 'PGR004G2606' => 'pgr', 'PGR031G2716' => 'pgr', 'PGR102G2460' => 'pgr', 'PGR142G2599' => 'pgr', 'PGSC0003DMG400000843' => 'stu', 'PGSC0003DMG400008829' => 'stu', 'PGSC0003DMG400030418' => 'stu', 'PGSC0003DMG400031834' => 'stu', 'PGSC0003DMG401028300' => 'stu', 'PGSC0003DMG402028300' => 'stu', 'Phvul.001G219300' => 'pvu', 'Phvul.007G056000' => 'pvu', 'Phvul.007G208000' => 'pvu', 'Phvul.008G119500' => 'pvu', 'Phvul.010G011200' => 'pvu', 'Phvul.010G014800' => 'pvu', 'Phvul.011G062900' => 'pvu', 'Phvul.L007043' => 'pvu', 'Potri.001G242300' => 'ptr', 'Potri.002G185300' => 'ptr', 'Potri.006G086900' => 'ptr', 'Potri.008G151700' => 'ptr', 'Potri.009G033500' => 'ptr', 'Potri.010G089300' => 'ptr', 'Potri.014G110800' => 'ptr', 'Pp3c27_8130' => 'ppa', 'Pp3c6_27410' => 'ppa', 'PRCOL_00001659' => 'pco', 'PRCOL_00001927' => 'pco', 'PRCOL_00003649' => 'pco', 'Prupe.1G011600' => 'ppe', 'Prupe.3G000800' => 'ppe', 'Prupe.3G001100' => 'ppe', 'Prupe.6G072700' => 'ppe', 'Prupe.6G072800' => 'ppe', 'Prupe.6G257300' => 'ppe', 'Prupe.8G033000' => 'ppe', 'Psat0s2633g0080' => 'psa', 'Psat0s3396g0080' => 'psa', 'Psat0s3396g0200' => 'psa', 'Psat3g139080' => 'psa', 'Psat5g285080' => 'psa', 'Psat6g157760' => 'psa', 'Psat6g208440' => 'psa', 'Psat7g215320' => 'psa', 'Psat7g215400' => 'psa', 'Psat7g235600' => 'psa', 'Psat7g235760' => 'psa', 'PSO063G4603' => 'pso', 'PSO210G0182' => 'pso', 'PSO210G0196' => 'pso', 'PSO339G0394' => 'pso', 'PSO339G4127' => 'pso', 'PSO513G0064' => 'pso', 'PSO761G0079' => 'pso', 'QL01p031003' => 'qlo', 'QL01p031078' => 'qlo', 'QL06p003004' => 'qlo', 'QL07p048731' => 'qlo', 'QL09p037427' => 'qlo', 'RcHm_v2.0_Chr3g0466361' => 'rch', 'RcHm_v2.0_Chr3g0485571' => 'rch', 'RcHm_v2.0_Chr4g0416551' => 'rch', 'RcHm_v2.0_Chr5g0065831' => 'rch', 'Rhsim01G0230500' => 'rsi', 'Rhsim05G0194000' => 'rsi', 'Rhsim08G0250400' => 'rsi', 'Sabra02G0131000' => 'sbr', 'Sabra06G0066300' => 'sbr', 'Sabra08G0115500' => 'sbr', 'Sabra09G0023900' => 'sbr', 'Sabra10G0054000' => 'sbr', 'Sabra14G0081500' => 'sbr', 'Sabra16G0147100' => 'sbr', 'SalBow2G2957' => 'sbo', 'SalBow4G3320' => 'sbo', 'SalBow8G1894' => 'sbo', 'Sc07g0007950' => 'sci', 'Sc12g0001360' => 'sci', 'Sc13g0004330' => 'sci', 'Sc20g0005010' => 'sci', 'Sed0000361' => 'sed', 'Sed0001706' => 'sed', 'Sed0002422' => 'sed', 'Sed0004029' => 'sed', 'Sed0004602' => 'sed', 'Sed0004943' => 'sed', 'Sed0008646' => 'sed', 'Sed0023313' => 'sed', 'Sed0024843' => 'sed', 'SEGI_00081' => 'sgi', 'SEGI_00947' => 'sgi', 'SEGI_04046' => 'sgi', 'SEGI_06880' => 'sgi', 'SEGI_09736' => 'sgi', 'SEGI_12741' => 'sgi', 'SEGI_14530' => 'sgi', 'SEGI_20705' => 'sgi', 'SEGI_26088' => 'sgi', 'SEGI_28323' => 'sgi', 'SEGI_33343' => 'sgi', 'SGA_v2.0_scaffold126G33775' => 'sas', 'SGA_v2.0_scaffold2G01337' => 'sas', 'SGA_v2.0_scaffold38G15006' => 'sas', 'SGA_v2.0_scaffold39G15264' => 'sas', 'SGA_v2.0_scaffold453G51880' => 'sas', 'SHI12696' => 'shi', 'SMO367G1096' => 'smo', 'Solyc01g068630.3' => 'sly', 'Solyc05g011880.3' => 'sly', 'Solyc06g076300.3' => 'sly', 'Solyc09g010940.4' => 'sly', 'Solyc09g075890.3' => 'sly', 'Sopen01g030560' => 'spe', 'Sopen05g006630' => 'spe', 'Sopen06g032720' => 'spe', 'Sopen09g005660' => 'spe', 'Sopen09g030690' => 'spe', 'Sp4g14540' => 'spa', 'Sp4g20030' => 'spa', 'Sp5g01320' => 'spa', 'Sp6g21170' => 'spa', 'Sp6g21180' => 'spa', 'Sp6g21190' => 'spa', 'Sp6g40220' => 'spa', 'TAR362G0122' => 'tar', 'TAR362G1338' => 'tar', 'TAR369G0590' => 'tar', 'TAR371G0824' => 'tar', 'TAR622G1429' => 'tar', 'TAR623G0734' => 'tar', 'TAR625G0441' => 'tar', 'TAR629G0976' => 'tar', 'TAR633G1195' => 'tar', 'TAR636G2660' => 'tar', 'THA.LOC104799440' => 'tha', 'THA.LOC104800966' => 'tha', 'THA.LOC104806559' => 'tha', 'THA.LOC104810765' => 'tha', 'THA.LOC104816266' => 'tha', 'THA.LOC104817419' => 'tha', 'THA.LOC104827021' => 'tha', 'Thecc.01G327400' => 'tca', 'Thecc.04G229200' => 'tca', 'Thecc.05G037400' => 'tca', 'Thecc.09G318600' => 'tca', 'Thecc.09G318700' => 'tca', 'Thhalv10006238m.g' => 'esa', 'Thhalv10014321m.g' => 'esa', 'Thhalv10014335m.g' => 'esa', 'Thhalv10015826m.g' => 'esa', 'Thhalv10017107m.g' => 'esa', 'Thhalv10017180m.g' => 'esa', 'Thhalv10029339m.g' => 'esa', 'TPR.G1699' => 'tpr', 'TPR.G23609' => 'tpr', 'TPR.G3081' => 'tpr', 'TPR.G40397' => 'tpr', 'TPR.G5522' => 'tpr', 'TPR.G5618' => 'tpr', 'TPR.G5626' => 'tpr', 'TWI09G1632' => 'twi', 'TWI23G1230' => 'twi', 'TWI53G1064' => 'twi', 'TWI59G0751' => 'twi', 'TWI74G0947' => 'twi', 'TWI77G0337' => 'twi', 'TWI79G1254' => 'twi', 'unitig_0.g2341' => 'ugi', 'unitig_26.g10006' => 'ugi', 'unitig_26.g10008' => 'ugi', 'unitig_26.g9192' => 'ugi', 'vmacro14547' => 'vma', 'vmacro15333' => 'vma', 'vmacro18743' => 'vma', 'vmacro20166' => 'vma', 'VMungo0331G0523' => 'vmu', 'VMungo0331G1202' => 'vmu', 'VMungo0720G1228' => 'vmu', 'VMungo0720G1514' => 'vmu', 'VMungo1080G0169' => 'vmu', 'VMungo1127G1475' => 'vmu', 'VMungo1383G1208' => 'vmu', 'VMungo1383G1698' => 'vmu', 'Zm00001eb012270' => 'zma', 'Zm00001eb054100' => 'zma', 'Zm00001eb063350' => 'zma', 'Zm00001eb328560' => 'zma', 'Zm00001eb342820' => 'zma', 'Zm00001eb362210' => 'zma', 'Zm00001eb397730' => 'zma', 'Zm00001eb399750' => 'zma' ) $gf_id = 'HOM05D000959' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000959' ) $data_identifier = 'HOM05D000959' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 5, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 5, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 10, 'mbi' => (int) 3, 'mco' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 2, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 3, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 11, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399750' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000959', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '622', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p07100' => 'bna', 'A03p11720' => 'bna', 'A05p08300' => 'bna', 'A05p13380' => 'bna', 'A09p54130' => 'bna', 'A10p16690' => 'bna', 'A10p16700' => 'bna', 'A10p33390' => 'bna', 'Aa31LG10G16020' => 'aar', 'Aa31LG1G11810' => 'aar', 'Aa31LG1G11830' => 'aar', 'Aa31LG1G22510' => 'aar', 'Aa31LG5G4890' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5793' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2310' => 'aag', 'Actinidia08499' => 'ach', 'Actinidia11262' => 'ach', 'Actinidia23926' => 'ach', 'Actinidia34420' => 'ach', 'Actinidia36970' => 'ach', 'Ah.02g111220' => 'amhyb', 'Ah.15g097750' => 'amhyb', 'AL4G27500' => 'aly', 'AL6G11470' => 'aly', 'AL8G35950' => 'aly', 'AL8G35960' => 'aly', 'AL8G35970' => 'aly', 'Aqoxy1G00912' => 'aox', 'Aqoxy2G02253' => 'aox', 'Aqoxy2G02411' => 'aox', 'Aqoxy5G00485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BZ66YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K8ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM4FUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6BF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HFV7XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25JBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0YNNV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MAKK6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P70IT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP2Z6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V61LZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YWP64R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3S9AI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7PGHH' => 'arhy', 'AT2G32150' => 'ath', 'AT3G62040' => 'ath', 'AT5G02230' => 'ath', 'AT5G59480' => 'ath', 'AT5G59490' => 'ath', 'ATR0332G060' => 'atr', 'ATR0559G190' => 'atr', 'ATR0693G294' => 'atr', 'Atru.chr3.3975' => 'acertr', 'Atru.chr3.3976' => 'acertr', 'Atru.chr3.3977' => 'acertr', 'Atru.chr4.2498' => 'acertr', 'Atru.chr5.838' => 'acertr', 'Atru.chr8.1990' => 'acertr', 'Atru.chr8.1991' => 'acertr', 'Atru.chr8.1992' => 'acertr', 'AUR62001759' => 'cqu', 'AUR62009545' => 'cqu', 'AUR62010474' => 'cqu', 'AUR62025820' => 'cqu', 'AUR62030422' => 'cqu', 'AUR62033605' => 'cqu', 'AUR62038615' => 'cqu', 'AUR62041347' => 'cqu', 'BcaB01g04574' => 'bca', 'BcaB02g09263' => 'bca', 'BcaB02g10453' => 'bca', 'BcaB05g22513' => 'bca', 'BcaB08g36253' => 'bca', 'BcaB08g36254' => 'bca', 'BcaC01g06519' => 'bca', 'BcaC02g11889' => 'bca', 'BcaC03g14010' => 'bca', 'BcaC03g18439' => 'bca', 'BcaC04g19765' => 'bca', 'BcaC09g48432' => 'bca', 'BcaNung07302' => 'bca', 'BolC2t06040H' => 'bol', 'BolC2t07346H' => 'bol', 'BolC3t13817H' => 'bol', 'BolC4t22625H' => 'bol', 'BolC4t23297H' => 'bol', 'BolC8t51278H' => 'bol', 'BolC9t58050H' => 'bol', 'BolC9t58051H' => 'bol', 'BolC9t60163H' => 'bol', 'BraA02t04712Z' => 'bra', 'BraA02t05791Z' => 'bra', 'BraA03t10483Z' => 'bra', 'BraA05t19795Z' => 'bra', 'BraA05t20276Z' => 'bra', 'BraA09t40827Z' => 'bra', 'BraA10t43750Z' => 'bra', 'BraA10t43751Z' => 'bra', 'BraA10t45370Z' => 'bra', 'C02p00400' => 'bna', 'C02p12460' => 'bna', 'C03p13680' => 'bna', 'C04p10270' => 'bna', 'C04p17500' => 'bna', 'C08p37010' => 'bna', 'C09p51880' => 'bna', 'C09p51890' => 'bna', 'C09p74300' => 'bna', 'CAN.G179.26' => 'can', 'CAN.G3384.1' => 'can', 'CAN.G394.68' => 'can', 'CAN.G907.13' => 'can', 'CANSAT11G0012' => 'cansat', 'CANSAT25G1586' => 'cansat', 'CANSAT35G0735' => 'cansat', 'CANSAT54G0556' => 'cansat', 'CANSAT64G0356' => 'cansat', 'CANSAT78G2042' => 'cansat', 'CARHR125920' => 'chi', 'CARHR131910' => 'chi', 'CARHR172390' => 'chi', 'CARHR211140' => 'chi', 'CARHR285850' => 'chi', 'CARHR285860' => 'chi', 'Carub.0004s1347' => 'cru', 'Carub.0004s1960' => 'cru', 'Carub.0005s2880' => 'cru', 'Carub.0006s0107' => 'cru', 'Carub.0008s2015' => 'cru', 'Carub.0008s2016' => 'cru', 'Carub.0008s2017' => 'cru', 'Ca_01315_v3' => 'car', 'Ca_05063_v3' => 'car', 'Ca_10231_v3' => 'car', 'Ca_10913_v3' => 'car', 'Ca_19156_v3' => 'car', 'Ca_23644_v3' => 'car', 'Ca_26735_v3' => 'car', 'Cc01_g13130' => 'ccan', 'Cc02_g21690' => 'ccan', 'Cc03_g03600' => 'ccan', 'Cc06_g02510' => 'ccan', 'CDE02G1265' => 'cde', 'CDE05G0415' => 'cde', 'CDE08G1082' => 'cde', 'Cfa005780' => 'cfa', 'Cfa011522' => 'cfa', 'Cfa011523' => 'cfa', 'Cfa015627' => 'cfa', 'Cfa017359' => 'cfa', 'Ciclev10005687m.g' => 'ccl', 'Ciclev10012173m.g' => 'ccl', 'Ciclev10021621m.g' => 'ccl', 'Ciclev10028968m.g' => 'ccl', 'Ciclev10029907m.g' => 'ccl', 'CiPaw.01G164800' => 'cil', 'CiPaw.07G083700' => 'cil', 'CiPaw.07G127000' => 'cil', 'CiPaw.07G136900' => 'cil', 'CiPaw.08G081700' => 'cil', 'CiPaw.09G194600' => 'cil', 'CiPaw.10G146500' => 'cil', 'CiPaw.13G091500' => 'cil', 'CiPaw.13G091600' => 'cil', 'ClCG00G003390' => 'cla', 'ClCG01G007220' => 'cla', 'ClCG03G001370' => 'cla', 'ClCG04G008100' => 'cla', 'ClCG06G006110' => 'cla', 'ClCG06G006130' => 'cla', 'ClCG10G021210' => 'cla', 'COL.COLO4_07648' => 'col', 'COL.COLO4_07650' => 'col', 'COL.COLO4_07651' => 'col', 'COL.COLO4_14780' => 'col', 'COL.COLO4_18546' => 'col', 'COL.COLO4_18547' => 'col', 'COL.COLO4_23103' => 'col', 'COL.COLO4_30419' => 'col', 'COL.COLO4_34232' => 'col', 'Cpa.g.sc169.20' => 'cpa', 'Cpa.g.sc57.45' => 'cpa', 'Cpa.g.sc58.124' => 'cpa', 'Cpa.g.sc58.125' => 'cpa', 'Cpa.g.sc81.118' => 'cpa', 'Cpa.g.sc81.119' => 'cpa', 'Cre12.g524700' => 'cre', 'CsaV3_1G034430' => 'csa', 'CsaV3_1G034440' => 'csa', 'CsaV3_1G034450' => 'csa', 'CsaV3_3G034830' => 'csa', 'CsaV3_4G025090' => 'csa', 'CsaV3_5G018660' => 'csa', 'CsaV3_6G038160' => 'csa', 'CSS0003447' => 'camsi', 'CSS0017840' => 'camsi', 'CSS0019260' => 'camsi', 'CSS0040375' => 'camsi', 'CSS0042533' => 'camsi', 'DCAR_005960' => 'dca', 'DCAR_012104' => 'dca', 'DCAR_012105' => 'dca', 'DCAR_012293' => 'dca', 'DCAR_015632' => 'dca', 'DCAR_024602' => 'dca', 'DCAR_028752' => 'dca', 'Dinv06261' => 'din', 'Dinv13982' => 'din', 'Dinv17029' => 'din', 'Dinv18463' => 'din', 'Dinv33181' => 'din', 'Dinv35585' => 'din', 'Dinv37161' => 'din', 'Dinv42977' => 'din', 'Dinv43122' => 'din', 'Dinv44517' => 'din', 'Duzib093G0256' => 'dzi', 'Duzib106G1254' => 'dzi', 'Duzib128G1789' => 'dzi', 'Duzib133G0633' => 'dzi', 'Duzib138G0510' => 'dzi', 'Duzib150G1084' => 'dzi', 'Duzib168G0488' => 'dzi', 'Duzib168G1523' => 'dzi', 'Duzib170G0133' => 'dzi', 'ECA234G1433' => 'eca', 'ECA236G1432' => 'eca', 'ECA236G2256' => 'eca', 'ECA236G2365' => 'eca', 'ECA236G4830' => 'eca', 'ECA248G1505' => 'eca', 'EL10Ac3g06431' => 'bvu', 'EL10Ac5g12577' => 'bvu', 'EL10Ac6g13533' => 'bvu', 'EL10Ac7g16045' => 'bvu', 'Eucgr.A01281' => 'egr', 'Eucgr.B02326' => 'egr', 'Eucgr.H03532' => 'egr', 'Eucgr.K00553' => 'egr', 'Eucgr.K03116' => 'egr', 'FAN02G3963' => 'fan', 'FAN05G0438' => 'fan', 'FAN09G2434' => 'fan', 'FAN12G3984' => 'fan', 'FAN14G0798' => 'fan', 'FAN17G0652' => 'fan', 'FAN19G1988' => 'fan', 'FAN22G0632' => 'fan', 'FAN23G0387' => 'fan', 'FAN26G1323' => 'fan', 'FAN28G0666' => 'fan', 'FvH4_1g26080' => 'fve', 'FvH4_3g36780' => 'fve', 'FvH4_4g15270' => 'fve', 'FvH4_6g13490' => 'fve', 'Glyma.01G098700' => 'gma', 'Glyma.03G065900' => 'gma', 'Glyma.03G073754' => 'gma', 'Glyma.03G073758' => 'gma', 'Glyma.03G083200' => 'gma', 'Glyma.03G225500' => 'gma', 'Glyma.05G037766' => 'gma', 'Glyma.07G133500' => 'gma', 'Glyma.10G139400' => 'gma', 'Glyma.10G248900' => 'gma', 'Glyma.11G137800' => 'gma', 'Glyma.12G061300' => 'gma', 'Glyma.13G337900' => 'gma', 'Glyma.15G036600' => 'gma', 'Glyma.18G182800' => 'gma', 'Glyma.19G222500' => 'gma', 'Glyma.20G144800' => 'gma', 'Gohir.A01G222000' => 'ghi', 'Gohir.A03G044000' => 'ghi', 'Gohir.A03G044100' => 'ghi', 'Gohir.A04G083100' => 'ghi', 'Gohir.A07G127200' => 'ghi', 'Gohir.A07G132400' => 'ghi', 'Gohir.A08G000700' => 'ghi', 'Gohir.A11G327300' => 'ghi', 'Gohir.D01G211500' => 'ghi', 'Gohir.D03G123400' => 'ghi', 'Gohir.D03G123500' => 'ghi', 'Gohir.D04G121800' => 'ghi', 'Gohir.D07G131500' => 'ghi', 'Gohir.D07G136600' => 'ghi', 'Gohir.D08G011600' => 'ghi', 'Gohir.D11G346200' => 'ghi', 'Gorai.001G142800' => 'gra', 'Gorai.001G148700' => 'gra', 'Gorai.002G257300' => 'gra', 'Gorai.003G130000' => 'gra', 'Gorai.003G130100' => 'gra', 'Gorai.004G005300' => 'gra', 'Gorai.007G376500' => 'gra', 'Gorai.012G104700' => 'gra', 'GSVIVG01017946001' => 'vvi', 'GSVIVG01024928001' => 'vvi', 'GSVIVG01028227001' => 'vvi', 'GSVIVG01034151001' => 'vvi', 'HanXRQChr05g0135031' => 'han', 'HanXRQChr05g0135041' => 'han', 'HanXRQChr05g0140021' => 'han', 'HanXRQChr06g0178981' => 'han', 'HanXRQChr07g0188251' => 'han', 'HanXRQChr08g0235311' => 'han', 'HanXRQChr09g0271011' => 'han', 'HanXRQChr10g0293321' => 'han', 'HanXRQChr13g0388171' => 'han', 'Haze_00916' => 'cav', 'Haze_05063' => 'cav', 'Haze_20814' => 'cav', 'Haze_24128' => 'cav', 'Hma1.2p1_0745F.1_g212010' => 'hma', 'Hma1.2p1_0757F.1_g213260' => 'hma', 'Hma1.2p1_0936F.1_g238840' => 'hma', 'Hma1.2p1_1735F.1_g299890' => 'hma', 'Hma1.2p1_1861F.1_g305685' => 'hma', 'HPP92_003397' => 'vpl', 'HPP92_012597' => 'vpl', 'HPP92_015520' => 'vpl', 'HPP92_015539' => 'vpl', 'HPP92_020373' => 'vpl', 'Hund04938' => 'sun', 'Hund10677' => 'sun', 'Hund11033' => 'sun', 'Hund12155' => 'sun', 'Lalb_Chr01g0022551' => 'lal', 'Lalb_Chr03g0042341' => 'lal', 'Lalb_Chr07g0192931' => 'lal', 'Lalb_Chr12g0209551' => 'lal', 'Lalb_Chr19g0125251' => 'lal', 'Lalb_Chr19g0137891' => 'lal', 'Lalb_Chr21g0304641' => 'lal', 'Lalb_Chr21g0309881' => 'lal', 'Lj1A5T12' => 'lonja', 'Lj1C148G10' => 'lonja', 'Lj2A93T83' => 'lonja', 'Lj3A738G68' => 'lonja', 'Lj3C966T1' => 'lonja', 'Lj3g0018958' => 'lja', 'Lj3g0021831' => 'lja', 'Lj3g0025443' => 'lja', 'Lj4g0026809' => 'lja', 'Lj5g0012558' => 'lja', 'Lj5g0021586' => 'lja', 'Lsat_1_v5_gn_5_156840' => 'lsa', 'Lsat_1_v5_gn_8_73460' => 'lsa', 'Lsat_1_v5_gn_8_73481' => 'lsa', 'Lsat_1_v5_gn_9_31601' => 'lsa', 'Lsat_1_v5_gn_9_77320' => 'lsa', 'Manes.01G171300' => 'mes', 'Manes.01G171400' => 'mes', 'Manes.01G236100' => 'mes', 'Manes.02G130500' => 'mes', 'Manes.02G130600' => 'mes', 'Manes.03G180200' => 'mes', 'Manes.05G007000' => 'mes', 'Manes.08G084400' => 'mes', 'Manes.09G092600' => 'mes', 'Manes.15G027900' => 'mes', 'MBI04_g40948_MAGBIO' => 'mbi', 'MBI14_g12123_MAGBIO' => 'mbi', 'MBI18_g28915_MAGBIO' => 'mbi', 'MCO09G053' => 'mco', 'MCO11G782' => 'mco', 'MCO15G215' => 'mco', 'MD03G1088500' => 'mdo', 'MD03G1088600' => 'mdo', 'MD04G1130800' => 'mdo', 'MD09G1291700' => 'mdo', 'MD11G1097500' => 'mdo', 'MD11G1097600' => 'mdo', 'MD12G1143900' => 'mdo', 'MD13G1191400' => 'mdo', 'MD16G1191500' => 'mdo', 'Medtr1g085570' => 'mtr', 'Medtr1g104610' => 'mtr', 'Medtr2g097520' => 'mtr', 'Medtr4g021800' => 'mtr', 'Medtr4g021825' => 'mtr', 'Medtr4g064270' => 'mtr', 'Medtr4g064380' => 'mtr', 'Medtr7g062150' => 'mtr', 'MELO3C003138.2' => 'cme', 'MELO3C005187.2' => 'cme', 'MELO3C009252.2' => 'cme', 'MELO3C014481.2' => 'cme', 'MELO3C020616.2' => 'cme', 'MELO3C020617.2' => 'cme', 'MELO3C020618.2' => 'cme', 'Migut.G00328' => 'egut', 'Migut.J00320' => 'egut', 'Migut.L01000' => 'egut', 'Migut.L01953' => 'egut', 'MSTRG.10253' => 'ama', 'MSTRG.19077' => 'ama', 'MSTRG.26780' => 'ama', 'MSTRG.4023' => 'ama', 'MSTRG.5655' => 'ama', 'MSTRG.9992' => 'ama', 'Nitab4.5_0000043g0310' => 'nta', 'Nitab4.5_0000463g0080' => 'nta', 'Nitab4.5_0000705g0170' => 'nta', 'Nitab4.5_0001326g0060' => 'nta', 'Nitab4.5_0001628g0030' => 'nta', 'Nitab4.5_0002103g0110' => 'nta', 'Nitab4.5_0002946g0030' => 'nta', 'Nitab4.5_0004639g0030' => 'nta', 'Nn2g11149' => 'nnu', 'Nn2g13389' => 'nnu', 'Nn4g25326' => 'nnu', 'Nn4g26290' => 'nnu', 'Nn5g29865' => 'nnu', 'Oeu004163.1' => 'oeu', 'Oeu006901.1' => 'oeu', 'Oeu010096.1' => 'oeu', 'Oeu024340.1' => 'oeu', 'Oeu048369.1' => 'oeu', 'Os01g0973000' => 'osa', 'Os03g0273800' => 'osa', 'Os03g0701200' => 'osa', 'Os03g0834050' => 'osa', 'Os07g0634400' => 'osa', 'Peaxi162Scf00092g01414' => 'pax', 'Peaxi162Scf00165g00818' => 'pax', 'Peaxi162Scf00309g00516' => 'pax', 'Peaxi162Scf00774g00218' => 'pax', 'PGR004G1824' => 'pgr', 'PGR004G2606' => 'pgr', 'PGR031G2716' => 'pgr', 'PGR102G2460' => 'pgr', 'PGR142G2599' => 'pgr', 'PGSC0003DMG400000843' => 'stu', 'PGSC0003DMG400008829' => 'stu', 'PGSC0003DMG400030418' => 'stu', 'PGSC0003DMG400031834' => 'stu', 'PGSC0003DMG401028300' => 'stu', 'PGSC0003DMG402028300' => 'stu', 'Phvul.001G219300' => 'pvu', 'Phvul.007G056000' => 'pvu', 'Phvul.007G208000' => 'pvu', 'Phvul.008G119500' => 'pvu', 'Phvul.010G011200' => 'pvu', 'Phvul.010G014800' => 'pvu', 'Phvul.011G062900' => 'pvu', 'Phvul.L007043' => 'pvu', 'Potri.001G242300' => 'ptr', 'Potri.002G185300' => 'ptr', 'Potri.006G086900' => 'ptr', 'Potri.008G151700' => 'ptr', 'Potri.009G033500' => 'ptr', 'Potri.010G089300' => 'ptr', 'Potri.014G110800' => 'ptr', 'Pp3c27_8130' => 'ppa', 'Pp3c6_27410' => 'ppa', 'PRCOL_00001659' => 'pco', 'PRCOL_00001927' => 'pco', 'PRCOL_00003649' => 'pco', 'Prupe.1G011600' => 'ppe', 'Prupe.3G000800' => 'ppe', 'Prupe.3G001100' => 'ppe', 'Prupe.6G072700' => 'ppe', 'Prupe.6G072800' => 'ppe', 'Prupe.6G257300' => 'ppe', 'Prupe.8G033000' => 'ppe', 'Psat0s2633g0080' => 'psa', 'Psat0s3396g0080' => 'psa', 'Psat0s3396g0200' => 'psa', 'Psat3g139080' => 'psa', 'Psat5g285080' => 'psa', 'Psat6g157760' => 'psa', 'Psat6g208440' => 'psa', 'Psat7g215320' => 'psa', 'Psat7g215400' => 'psa', 'Psat7g235600' => 'psa', 'Psat7g235760' => 'psa', 'PSO063G4603' => 'pso', 'PSO210G0182' => 'pso', 'PSO210G0196' => 'pso', 'PSO339G0394' => 'pso', 'PSO339G4127' => 'pso', 'PSO513G0064' => 'pso', 'PSO761G0079' => 'pso', 'QL01p031003' => 'qlo', 'QL01p031078' => 'qlo', 'QL06p003004' => 'qlo', 'QL07p048731' => 'qlo', 'QL09p037427' => 'qlo', 'RcHm_v2.0_Chr3g0466361' => 'rch', 'RcHm_v2.0_Chr3g0485571' => 'rch', 'RcHm_v2.0_Chr4g0416551' => 'rch', 'RcHm_v2.0_Chr5g0065831' => 'rch', 'Rhsim01G0230500' => 'rsi', 'Rhsim05G0194000' => 'rsi', 'Rhsim08G0250400' => 'rsi', 'Sabra02G0131000' => 'sbr', 'Sabra06G0066300' => 'sbr', 'Sabra08G0115500' => 'sbr', 'Sabra09G0023900' => 'sbr', 'Sabra10G0054000' => 'sbr', 'Sabra14G0081500' => 'sbr', 'Sabra16G0147100' => 'sbr', 'SalBow2G2957' => 'sbo', 'SalBow4G3320' => 'sbo', 'SalBow8G1894' => 'sbo', 'Sc07g0007950' => 'sci', 'Sc12g0001360' => 'sci', 'Sc13g0004330' => 'sci', 'Sc20g0005010' => 'sci', 'Sed0000361' => 'sed', 'Sed0001706' => 'sed', 'Sed0002422' => 'sed', 'Sed0004029' => 'sed', 'Sed0004602' => 'sed', 'Sed0004943' => 'sed', 'Sed0008646' => 'sed', 'Sed0023313' => 'sed', 'Sed0024843' => 'sed', 'SEGI_00081' => 'sgi', 'SEGI_00947' => 'sgi', 'SEGI_04046' => 'sgi', 'SEGI_06880' => 'sgi', 'SEGI_09736' => 'sgi', 'SEGI_12741' => 'sgi', 'SEGI_14530' => 'sgi', 'SEGI_20705' => 'sgi', 'SEGI_26088' => 'sgi', 'SEGI_28323' => 'sgi', 'SEGI_33343' => 'sgi', 'SGA_v2.0_scaffold126G33775' => 'sas', 'SGA_v2.0_scaffold2G01337' => 'sas', 'SGA_v2.0_scaffold38G15006' => 'sas', 'SGA_v2.0_scaffold39G15264' => 'sas', 'SGA_v2.0_scaffold453G51880' => 'sas', 'SHI12696' => 'shi', 'SMO367G1096' => 'smo', 'Solyc01g068630.3' => 'sly', 'Solyc05g011880.3' => 'sly', 'Solyc06g076300.3' => 'sly', 'Solyc09g010940.4' => 'sly', 'Solyc09g075890.3' => 'sly', 'Sopen01g030560' => 'spe', 'Sopen05g006630' => 'spe', 'Sopen06g032720' => 'spe', 'Sopen09g005660' => 'spe', 'Sopen09g030690' => 'spe', 'Sp4g14540' => 'spa', 'Sp4g20030' => 'spa', 'Sp5g01320' => 'spa', 'Sp6g21170' => 'spa', 'Sp6g21180' => 'spa', 'Sp6g21190' => 'spa', 'Sp6g40220' => 'spa', 'TAR362G0122' => 'tar', 'TAR362G1338' => 'tar', 'TAR369G0590' => 'tar', 'TAR371G0824' => 'tar', 'TAR622G1429' => 'tar', 'TAR623G0734' => 'tar', 'TAR625G0441' => 'tar', 'TAR629G0976' => 'tar', 'TAR633G1195' => 'tar', 'TAR636G2660' => 'tar', 'THA.LOC104799440' => 'tha', 'THA.LOC104800966' => 'tha', 'THA.LOC104806559' => 'tha', 'THA.LOC104810765' => 'tha', 'THA.LOC104816266' => 'tha', 'THA.LOC104817419' => 'tha', 'THA.LOC104827021' => 'tha', 'Thecc.01G327400' => 'tca', 'Thecc.04G229200' => 'tca', 'Thecc.05G037400' => 'tca', 'Thecc.09G318600' => 'tca', 'Thecc.09G318700' => 'tca', 'Thhalv10006238m.g' => 'esa', 'Thhalv10014321m.g' => 'esa', 'Thhalv10014335m.g' => 'esa', 'Thhalv10015826m.g' => 'esa', 'Thhalv10017107m.g' => 'esa', 'Thhalv10017180m.g' => 'esa', 'Thhalv10029339m.g' => 'esa', 'TPR.G1699' => 'tpr', 'TPR.G23609' => 'tpr', 'TPR.G3081' => 'tpr', 'TPR.G40397' => 'tpr', 'TPR.G5522' => 'tpr', 'TPR.G5618' => 'tpr', 'TPR.G5626' => 'tpr', 'TWI09G1632' => 'twi', 'TWI23G1230' => 'twi', 'TWI53G1064' => 'twi', 'TWI59G0751' => 'twi', 'TWI74G0947' => 'twi', 'TWI77G0337' => 'twi', 'TWI79G1254' => 'twi', 'unitig_0.g2341' => 'ugi', 'unitig_26.g10006' => 'ugi', 'unitig_26.g10008' => 'ugi', 'unitig_26.g9192' => 'ugi', 'vmacro14547' => 'vma', 'vmacro15333' => 'vma', 'vmacro18743' => 'vma', 'vmacro20166' => 'vma', 'VMungo0331G0523' => 'vmu', 'VMungo0331G1202' => 'vmu', 'VMungo0720G1228' => 'vmu', 'VMungo0720G1514' => 'vmu', 'VMungo1080G0169' => 'vmu', 'VMungo1127G1475' => 'vmu', 'VMungo1383G1208' => 'vmu', 'VMungo1383G1698' => 'vmu', 'Zm00001eb012270' => 'zma', 'Zm00001eb054100' => 'zma', 'Zm00001eb063350' => 'zma', 'Zm00001eb328560' => 'zma', 'Zm00001eb342820' => 'zma', 'Zm00001eb362210' => 'zma', 'Zm00001eb397730' => 'zma', 'Zm00001eb399750' => 'zma' ), 'gf_id' => 'HOM05D000959', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000959' ), 'data_identifier' => 'HOM05D000959', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000959', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '622', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p07100' => 'bna', 'A03p11720' => 'bna', 'A05p08300' => 'bna', 'A05p13380' => 'bna', 'A09p54130' => 'bna', 'A10p16690' => 'bna', 'A10p16700' => 'bna', 'A10p33390' => 'bna', 'Aa31LG10G16020' => 'aar', 'Aa31LG1G11810' => 'aar', 'Aa31LG1G11830' => 'aar', 'Aa31LG1G22510' => 'aar', 'Aa31LG5G4890' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5793' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2310' => 'aag', 'Actinidia08499' => 'ach', 'Actinidia11262' => 'ach', 'Actinidia23926' => 'ach', 'Actinidia34420' => 'ach', 'Actinidia36970' => 'ach', 'Ah.02g111220' => 'amhyb', 'Ah.15g097750' => 'amhyb', 'AL4G27500' => 'aly', 'AL6G11470' => 'aly', 'AL8G35950' => 'aly', 'AL8G35960' => 'aly', 'AL8G35970' => 'aly', 'Aqoxy1G00912' => 'aox', 'Aqoxy2G02253' => 'aox', 'Aqoxy2G02411' => 'aox', 'Aqoxy5G00485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BZ66YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K8ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM4FUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6BF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HFV7XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25JBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0YNNV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MAKK6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P70IT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP2Z6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V61LZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YWP64R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3S9AI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7PGHH' => 'arhy', 'AT2G32150' => 'ath', 'AT3G62040' => 'ath', 'AT5G02230' => 'ath', 'AT5G59480' => 'ath', 'AT5G59490' => 'ath', 'ATR0332G060' => 'atr', 'ATR0559G190' => 'atr', 'ATR0693G294' => 'atr', 'Atru.chr3.3975' => 'acertr', 'Atru.chr3.3976' => 'acertr', 'Atru.chr3.3977' => 'acertr', 'Atru.chr4.2498' => 'acertr', 'Atru.chr5.838' => 'acertr', 'Atru.chr8.1990' => 'acertr', 'Atru.chr8.1991' => 'acertr', 'Atru.chr8.1992' => 'acertr', 'AUR62001759' => 'cqu', 'AUR62009545' => 'cqu', 'AUR62010474' => 'cqu', 'AUR62025820' => 'cqu', 'AUR62030422' => 'cqu', 'AUR62033605' => 'cqu', 'AUR62038615' => 'cqu', 'AUR62041347' => 'cqu', 'BcaB01g04574' => 'bca', 'BcaB02g09263' => 'bca', 'BcaB02g10453' => 'bca', 'BcaB05g22513' => 'bca', 'BcaB08g36253' => 'bca', 'BcaB08g36254' => 'bca', 'BcaC01g06519' => 'bca', 'BcaC02g11889' => 'bca', 'BcaC03g14010' => 'bca', 'BcaC03g18439' => 'bca', 'BcaC04g19765' => 'bca', 'BcaC09g48432' => 'bca', 'BcaNung07302' => 'bca', 'BolC2t06040H' => 'bol', 'BolC2t07346H' => 'bol', 'BolC3t13817H' => 'bol', 'BolC4t22625H' => 'bol', 'BolC4t23297H' => 'bol', 'BolC8t51278H' => 'bol', 'BolC9t58050H' => 'bol', 'BolC9t58051H' => 'bol', 'BolC9t60163H' => 'bol', 'BraA02t04712Z' => 'bra', 'BraA02t05791Z' => 'bra', 'BraA03t10483Z' => 'bra', 'BraA05t19795Z' => 'bra', 'BraA05t20276Z' => 'bra', 'BraA09t40827Z' => 'bra', 'BraA10t43750Z' => 'bra', 'BraA10t43751Z' => 'bra', 'BraA10t45370Z' => 'bra', 'C02p00400' => 'bna', 'C02p12460' => 'bna', 'C03p13680' => 'bna', 'C04p10270' => 'bna', 'C04p17500' => 'bna', 'C08p37010' => 'bna', 'C09p51880' => 'bna', 'C09p51890' => 'bna', 'C09p74300' => 'bna', 'CAN.G179.26' => 'can', 'CAN.G3384.1' => 'can', 'CAN.G394.68' => 'can', 'CAN.G907.13' => 'can', 'CANSAT11G0012' => 'cansat', 'CANSAT25G1586' => 'cansat', 'CANSAT35G0735' => 'cansat', 'CANSAT54G0556' => 'cansat', 'CANSAT64G0356' => 'cansat', 'CANSAT78G2042' => 'cansat', 'CARHR125920' => 'chi', 'CARHR131910' => 'chi', 'CARHR172390' => 'chi', 'CARHR211140' => 'chi', 'CARHR285850' => 'chi', 'CARHR285860' => 'chi', 'Carub.0004s1347' => 'cru', 'Carub.0004s1960' => 'cru', 'Carub.0005s2880' => 'cru', 'Carub.0006s0107' => 'cru', 'Carub.0008s2015' => 'cru', 'Carub.0008s2016' => 'cru', 'Carub.0008s2017' => 'cru', 'Ca_01315_v3' => 'car', 'Ca_05063_v3' => 'car', 'Ca_10231_v3' => 'car', 'Ca_10913_v3' => 'car', 'Ca_19156_v3' => 'car', 'Ca_23644_v3' => 'car', 'Ca_26735_v3' => 'car', 'Cc01_g13130' => 'ccan', 'Cc02_g21690' => 'ccan', 'Cc03_g03600' => 'ccan', 'Cc06_g02510' => 'ccan', 'CDE02G1265' => 'cde', 'CDE05G0415' => 'cde', 'CDE08G1082' => 'cde', 'Cfa005780' => 'cfa', 'Cfa011522' => 'cfa', 'Cfa011523' => 'cfa', 'Cfa015627' => 'cfa', 'Cfa017359' => 'cfa', 'Ciclev10005687m.g' => 'ccl', 'Ciclev10012173m.g' => 'ccl', 'Ciclev10021621m.g' => 'ccl', 'Ciclev10028968m.g' => 'ccl', 'Ciclev10029907m.g' => 'ccl', 'CiPaw.01G164800' => 'cil', 'CiPaw.07G083700' => 'cil', 'CiPaw.07G127000' => 'cil', 'CiPaw.07G136900' => 'cil', 'CiPaw.08G081700' => 'cil', 'CiPaw.09G194600' => 'cil', 'CiPaw.10G146500' => 'cil', 'CiPaw.13G091500' => 'cil', 'CiPaw.13G091600' => 'cil', 'ClCG00G003390' => 'cla', 'ClCG01G007220' => 'cla', 'ClCG03G001370' => 'cla', 'ClCG04G008100' => 'cla', 'ClCG06G006110' => 'cla', 'ClCG06G006130' => 'cla', 'ClCG10G021210' => 'cla', 'COL.COLO4_07648' => 'col', 'COL.COLO4_07650' => 'col', 'COL.COLO4_07651' => 'col', 'COL.COLO4_14780' => 'col', 'COL.COLO4_18546' => 'col', 'COL.COLO4_18547' => 'col', 'COL.COLO4_23103' => 'col', 'COL.COLO4_30419' => 'col', 'COL.COLO4_34232' => 'col', 'Cpa.g.sc169.20' => 'cpa', 'Cpa.g.sc57.45' => 'cpa', 'Cpa.g.sc58.124' => 'cpa', 'Cpa.g.sc58.125' => 'cpa', 'Cpa.g.sc81.118' => 'cpa', 'Cpa.g.sc81.119' => 'cpa', 'Cre12.g524700' => 'cre', 'CsaV3_1G034430' => 'csa', 'CsaV3_1G034440' => 'csa', 'CsaV3_1G034450' => 'csa', 'CsaV3_3G034830' => 'csa', 'CsaV3_4G025090' => 'csa', 'CsaV3_5G018660' => 'csa', 'CsaV3_6G038160' => 'csa', 'CSS0003447' => 'camsi', 'CSS0017840' => 'camsi', 'CSS0019260' => 'camsi', 'CSS0040375' => 'camsi', 'CSS0042533' => 'camsi', 'DCAR_005960' => 'dca', 'DCAR_012104' => 'dca', 'DCAR_012105' => 'dca', 'DCAR_012293' => 'dca', 'DCAR_015632' => 'dca', 'DCAR_024602' => 'dca', 'DCAR_028752' => 'dca', 'Dinv06261' => 'din', 'Dinv13982' => 'din', 'Dinv17029' => 'din', 'Dinv18463' => 'din', 'Dinv33181' => 'din', 'Dinv35585' => 'din', 'Dinv37161' => 'din', 'Dinv42977' => 'din', 'Dinv43122' => 'din', 'Dinv44517' => 'din', 'Duzib093G0256' => 'dzi', 'Duzib106G1254' => 'dzi', 'Duzib128G1789' => 'dzi', 'Duzib133G0633' => 'dzi', 'Duzib138G0510' => 'dzi', 'Duzib150G1084' => 'dzi', 'Duzib168G0488' => 'dzi', 'Duzib168G1523' => 'dzi', 'Duzib170G0133' => 'dzi', 'ECA234G1433' => 'eca', 'ECA236G1432' => 'eca', 'ECA236G2256' => 'eca', 'ECA236G2365' => 'eca', 'ECA236G4830' => 'eca', 'ECA248G1505' => 'eca', 'EL10Ac3g06431' => 'bvu', 'EL10Ac5g12577' => 'bvu', 'EL10Ac6g13533' => 'bvu', 'EL10Ac7g16045' => 'bvu', 'Eucgr.A01281' => 'egr', 'Eucgr.B02326' => 'egr', 'Eucgr.H03532' => 'egr', 'Eucgr.K00553' => 'egr', 'Eucgr.K03116' => 'egr', 'FAN02G3963' => 'fan', 'FAN05G0438' => 'fan', 'FAN09G2434' => 'fan', 'FAN12G3984' => 'fan', 'FAN14G0798' => 'fan', 'FAN17G0652' => 'fan', 'FAN19G1988' => 'fan', 'FAN22G0632' => 'fan', 'FAN23G0387' => 'fan', 'FAN26G1323' => 'fan', 'FAN28G0666' => 'fan', 'FvH4_1g26080' => 'fve', 'FvH4_3g36780' => 'fve', 'FvH4_4g15270' => 'fve', 'FvH4_6g13490' => 'fve', 'Glyma.01G098700' => 'gma', 'Glyma.03G065900' => 'gma', 'Glyma.03G073754' => 'gma', 'Glyma.03G073758' => 'gma', 'Glyma.03G083200' => 'gma', 'Glyma.03G225500' => 'gma', 'Glyma.05G037766' => 'gma', 'Glyma.07G133500' => 'gma', 'Glyma.10G139400' => 'gma', 'Glyma.10G248900' => 'gma', 'Glyma.11G137800' => 'gma', 'Glyma.12G061300' => 'gma', 'Glyma.13G337900' => 'gma', 'Glyma.15G036600' => 'gma', 'Glyma.18G182800' => 'gma', 'Glyma.19G222500' => 'gma', 'Glyma.20G144800' => 'gma', 'Gohir.A01G222000' => 'ghi', 'Gohir.A03G044000' => 'ghi', 'Gohir.A03G044100' => 'ghi', 'Gohir.A04G083100' => 'ghi', 'Gohir.A07G127200' => 'ghi', 'Gohir.A07G132400' => 'ghi', 'Gohir.A08G000700' => 'ghi', 'Gohir.A11G327300' => 'ghi', 'Gohir.D01G211500' => 'ghi', 'Gohir.D03G123400' => 'ghi', 'Gohir.D03G123500' => 'ghi', 'Gohir.D04G121800' => 'ghi', 'Gohir.D07G131500' => 'ghi', 'Gohir.D07G136600' => 'ghi', 'Gohir.D08G011600' => 'ghi', 'Gohir.D11G346200' => 'ghi', 'Gorai.001G142800' => 'gra', 'Gorai.001G148700' => 'gra', 'Gorai.002G257300' => 'gra', 'Gorai.003G130000' => 'gra', 'Gorai.003G130100' => 'gra', 'Gorai.004G005300' => 'gra', 'Gorai.007G376500' => 'gra', 'Gorai.012G104700' => 'gra', 'GSVIVG01017946001' => 'vvi', 'GSVIVG01024928001' => 'vvi', 'GSVIVG01028227001' => 'vvi', 'GSVIVG01034151001' => 'vvi', 'HanXRQChr05g0135031' => 'han', 'HanXRQChr05g0135041' => 'han', 'HanXRQChr05g0140021' => 'han', 'HanXRQChr06g0178981' => 'han', 'HanXRQChr07g0188251' => 'han', 'HanXRQChr08g0235311' => 'han', 'HanXRQChr09g0271011' => 'han', 'HanXRQChr10g0293321' => 'han', 'HanXRQChr13g0388171' => 'han', 'Haze_00916' => 'cav', 'Haze_05063' => 'cav', 'Haze_20814' => 'cav', 'Haze_24128' => 'cav', 'Hma1.2p1_0745F.1_g212010' => 'hma', 'Hma1.2p1_0757F.1_g213260' => 'hma', 'Hma1.2p1_0936F.1_g238840' => 'hma', 'Hma1.2p1_1735F.1_g299890' => 'hma', 'Hma1.2p1_1861F.1_g305685' => 'hma', 'HPP92_003397' => 'vpl', 'HPP92_012597' => 'vpl', 'HPP92_015520' => 'vpl', 'HPP92_015539' => 'vpl', 'HPP92_020373' => 'vpl', 'Hund04938' => 'sun', 'Hund10677' => 'sun', 'Hund11033' => 'sun', 'Hund12155' => 'sun', 'Lalb_Chr01g0022551' => 'lal', 'Lalb_Chr03g0042341' => 'lal', 'Lalb_Chr07g0192931' => 'lal', 'Lalb_Chr12g0209551' => 'lal', 'Lalb_Chr19g0125251' => 'lal', 'Lalb_Chr19g0137891' => 'lal', 'Lalb_Chr21g0304641' => 'lal', 'Lalb_Chr21g0309881' => 'lal', 'Lj1A5T12' => 'lonja', 'Lj1C148G10' => 'lonja', 'Lj2A93T83' => 'lonja', 'Lj3A738G68' => 'lonja', 'Lj3C966T1' => 'lonja', 'Lj3g0018958' => 'lja', 'Lj3g0021831' => 'lja', 'Lj3g0025443' => 'lja', 'Lj4g0026809' => 'lja', 'Lj5g0012558' => 'lja', 'Lj5g0021586' => 'lja', 'Lsat_1_v5_gn_5_156840' => 'lsa', 'Lsat_1_v5_gn_8_73460' => 'lsa', 'Lsat_1_v5_gn_8_73481' => 'lsa', 'Lsat_1_v5_gn_9_31601' => 'lsa', 'Lsat_1_v5_gn_9_77320' => 'lsa', 'Manes.01G171300' => 'mes', 'Manes.01G171400' => 'mes', 'Manes.01G236100' => 'mes', 'Manes.02G130500' => 'mes', 'Manes.02G130600' => 'mes', 'Manes.03G180200' => 'mes', 'Manes.05G007000' => 'mes', 'Manes.08G084400' => 'mes', 'Manes.09G092600' => 'mes', 'Manes.15G027900' => 'mes', 'MBI04_g40948_MAGBIO' => 'mbi', 'MBI14_g12123_MAGBIO' => 'mbi', 'MBI18_g28915_MAGBIO' => 'mbi', 'MCO09G053' => 'mco', 'MCO11G782' => 'mco', 'MCO15G215' => 'mco', 'MD03G1088500' => 'mdo', 'MD03G1088600' => 'mdo', 'MD04G1130800' => 'mdo', 'MD09G1291700' => 'mdo', 'MD11G1097500' => 'mdo', 'MD11G1097600' => 'mdo', 'MD12G1143900' => 'mdo', 'MD13G1191400' => 'mdo', 'MD16G1191500' => 'mdo', 'Medtr1g085570' => 'mtr', 'Medtr1g104610' => 'mtr', 'Medtr2g097520' => 'mtr', 'Medtr4g021800' => 'mtr', 'Medtr4g021825' => 'mtr', 'Medtr4g064270' => 'mtr', 'Medtr4g064380' => 'mtr', 'Medtr7g062150' => 'mtr', 'MELO3C003138.2' => 'cme', 'MELO3C005187.2' => 'cme', 'MELO3C009252.2' => 'cme', 'MELO3C014481.2' => 'cme', 'MELO3C020616.2' => 'cme', 'MELO3C020617.2' => 'cme', 'MELO3C020618.2' => 'cme', 'Migut.G00328' => 'egut', 'Migut.J00320' => 'egut', 'Migut.L01000' => 'egut', 'Migut.L01953' => 'egut', 'MSTRG.10253' => 'ama', 'MSTRG.19077' => 'ama', 'MSTRG.26780' => 'ama', 'MSTRG.4023' => 'ama', 'MSTRG.5655' => 'ama', 'MSTRG.9992' => 'ama', 'Nitab4.5_0000043g0310' => 'nta', 'Nitab4.5_0000463g0080' => 'nta', 'Nitab4.5_0000705g0170' => 'nta', 'Nitab4.5_0001326g0060' => 'nta', 'Nitab4.5_0001628g0030' => 'nta', 'Nitab4.5_0002103g0110' => 'nta', 'Nitab4.5_0002946g0030' => 'nta', 'Nitab4.5_0004639g0030' => 'nta', 'Nn2g11149' => 'nnu', 'Nn2g13389' => 'nnu', 'Nn4g25326' => 'nnu', 'Nn4g26290' => 'nnu', 'Nn5g29865' => 'nnu', 'Oeu004163.1' => 'oeu', 'Oeu006901.1' => 'oeu', 'Oeu010096.1' => 'oeu', 'Oeu024340.1' => 'oeu', 'Oeu048369.1' => 'oeu', 'Os01g0973000' => 'osa', 'Os03g0273800' => 'osa', 'Os03g0701200' => 'osa', 'Os03g0834050' => 'osa', 'Os07g0634400' => 'osa', 'Peaxi162Scf00092g01414' => 'pax', 'Peaxi162Scf00165g00818' => 'pax', 'Peaxi162Scf00309g00516' => 'pax', 'Peaxi162Scf00774g00218' => 'pax', 'PGR004G1824' => 'pgr', 'PGR004G2606' => 'pgr', 'PGR031G2716' => 'pgr', 'PGR102G2460' => 'pgr', 'PGR142G2599' => 'pgr', 'PGSC0003DMG400000843' => 'stu', 'PGSC0003DMG400008829' => 'stu', 'PGSC0003DMG400030418' => 'stu', 'PGSC0003DMG400031834' => 'stu', 'PGSC0003DMG401028300' => 'stu', 'PGSC0003DMG402028300' => 'stu', 'Phvul.001G219300' => 'pvu', 'Phvul.007G056000' => 'pvu', 'Phvul.007G208000' => 'pvu', 'Phvul.008G119500' => 'pvu', 'Phvul.010G011200' => 'pvu', 'Phvul.010G014800' => 'pvu', 'Phvul.011G062900' => 'pvu', 'Phvul.L007043' => 'pvu', 'Potri.001G242300' => 'ptr', 'Potri.002G185300' => 'ptr', 'Potri.006G086900' => 'ptr', 'Potri.008G151700' => 'ptr', 'Potri.009G033500' => 'ptr', 'Potri.010G089300' => 'ptr', 'Potri.014G110800' => 'ptr', 'Pp3c27_8130' => 'ppa', 'Pp3c6_27410' => 'ppa', 'PRCOL_00001659' => 'pco', 'PRCOL_00001927' => 'pco', 'PRCOL_00003649' => 'pco', 'Prupe.1G011600' => 'ppe', 'Prupe.3G000800' => 'ppe', 'Prupe.3G001100' => 'ppe', 'Prupe.6G072700' => 'ppe', 'Prupe.6G072800' => 'ppe', 'Prupe.6G257300' => 'ppe', 'Prupe.8G033000' => 'ppe', 'Psat0s2633g0080' => 'psa', 'Psat0s3396g0080' => 'psa', 'Psat0s3396g0200' => 'psa', 'Psat3g139080' => 'psa', 'Psat5g285080' => 'psa', 'Psat6g157760' => 'psa', 'Psat6g208440' => 'psa', 'Psat7g215320' => 'psa', 'Psat7g215400' => 'psa', 'Psat7g235600' => 'psa', 'Psat7g235760' => 'psa', 'PSO063G4603' => 'pso', 'PSO210G0182' => 'pso', 'PSO210G0196' => 'pso', 'PSO339G0394' => 'pso', 'PSO339G4127' => 'pso', 'PSO513G0064' => 'pso', 'PSO761G0079' => 'pso', 'QL01p031003' => 'qlo', 'QL01p031078' => 'qlo', 'QL06p003004' => 'qlo', 'QL07p048731' => 'qlo', 'QL09p037427' => 'qlo', 'RcHm_v2.0_Chr3g0466361' => 'rch', 'RcHm_v2.0_Chr3g0485571' => 'rch', 'RcHm_v2.0_Chr4g0416551' => 'rch', 'RcHm_v2.0_Chr5g0065831' => 'rch', 'Rhsim01G0230500' => 'rsi', 'Rhsim05G0194000' => 'rsi', 'Rhsim08G0250400' => 'rsi', 'Sabra02G0131000' => 'sbr', 'Sabra06G0066300' => 'sbr', 'Sabra08G0115500' => 'sbr', 'Sabra09G0023900' => 'sbr', 'Sabra10G0054000' => 'sbr', 'Sabra14G0081500' => 'sbr', 'Sabra16G0147100' => 'sbr', 'SalBow2G2957' => 'sbo', 'SalBow4G3320' => 'sbo', 'SalBow8G1894' => 'sbo', 'Sc07g0007950' => 'sci', 'Sc12g0001360' => 'sci', 'Sc13g0004330' => 'sci', 'Sc20g0005010' => 'sci', 'Sed0000361' => 'sed', 'Sed0001706' => 'sed', 'Sed0002422' => 'sed', 'Sed0004029' => 'sed', 'Sed0004602' => 'sed', 'Sed0004943' => 'sed', 'Sed0008646' => 'sed', 'Sed0023313' => 'sed', 'Sed0024843' => 'sed', 'SEGI_00081' => 'sgi', 'SEGI_00947' => 'sgi', 'SEGI_04046' => 'sgi', 'SEGI_06880' => 'sgi', 'SEGI_09736' => 'sgi', 'SEGI_12741' => 'sgi', 'SEGI_14530' => 'sgi', 'SEGI_20705' => 'sgi', 'SEGI_26088' => 'sgi', 'SEGI_28323' => 'sgi', 'SEGI_33343' => 'sgi', 'SGA_v2.0_scaffold126G33775' => 'sas', 'SGA_v2.0_scaffold2G01337' => 'sas', 'SGA_v2.0_scaffold38G15006' => 'sas', 'SGA_v2.0_scaffold39G15264' => 'sas', 'SGA_v2.0_scaffold453G51880' => 'sas', 'SHI12696' => 'shi', 'SMO367G1096' => 'smo', 'Solyc01g068630.3' => 'sly', 'Solyc05g011880.3' => 'sly', 'Solyc06g076300.3' => 'sly', 'Solyc09g010940.4' => 'sly', 'Solyc09g075890.3' => 'sly', 'Sopen01g030560' => 'spe', 'Sopen05g006630' => 'spe', 'Sopen06g032720' => 'spe', 'Sopen09g005660' => 'spe', 'Sopen09g030690' => 'spe', 'Sp4g14540' => 'spa', 'Sp4g20030' => 'spa', 'Sp5g01320' => 'spa', 'Sp6g21170' => 'spa', 'Sp6g21180' => 'spa', 'Sp6g21190' => 'spa', 'Sp6g40220' => 'spa', 'TAR362G0122' => 'tar', 'TAR362G1338' => 'tar', 'TAR369G0590' => 'tar', 'TAR371G0824' => 'tar', 'TAR622G1429' => 'tar', 'TAR623G0734' => 'tar', 'TAR625G0441' => 'tar', 'TAR629G0976' => 'tar', 'TAR633G1195' => 'tar', 'TAR636G2660' => 'tar', 'THA.LOC104799440' => 'tha', 'THA.LOC104800966' => 'tha', 'THA.LOC104806559' => 'tha', 'THA.LOC104810765' => 'tha', 'THA.LOC104816266' => 'tha', 'THA.LOC104817419' => 'tha', 'THA.LOC104827021' => 'tha', 'Thecc.01G327400' => 'tca', 'Thecc.04G229200' => 'tca', 'Thecc.05G037400' => 'tca', 'Thecc.09G318600' => 'tca', 'Thecc.09G318700' => 'tca', 'Thhalv10006238m.g' => 'esa', 'Thhalv10014321m.g' => 'esa', 'Thhalv10014335m.g' => 'esa', 'Thhalv10015826m.g' => 'esa', 'Thhalv10017107m.g' => 'esa', 'Thhalv10017180m.g' => 'esa', 'Thhalv10029339m.g' => 'esa', 'TPR.G1699' => 'tpr', 'TPR.G23609' => 'tpr', 'TPR.G3081' => 'tpr', 'TPR.G40397' => 'tpr', 'TPR.G5522' => 'tpr', 'TPR.G5618' => 'tpr', 'TPR.G5626' => 'tpr', 'TWI09G1632' => 'twi', 'TWI23G1230' => 'twi', 'TWI53G1064' => 'twi', 'TWI59G0751' => 'twi', 'TWI74G0947' => 'twi', 'TWI77G0337' => 'twi', 'TWI79G1254' => 'twi', 'unitig_0.g2341' => 'ugi', 'unitig_26.g10006' => 'ugi', 'unitig_26.g10008' => 'ugi', 'unitig_26.g9192' => 'ugi', 'vmacro14547' => 'vma', 'vmacro15333' => 'vma', 'vmacro18743' => 'vma', 'vmacro20166' => 'vma', 'VMungo0331G0523' => 'vmu', 'VMungo0331G1202' => 'vmu', 'VMungo0720G1228' => 'vmu', 'VMungo0720G1514' => 'vmu', 'VMungo1080G0169' => 'vmu', 'VMungo1127G1475' => 'vmu', 'VMungo1383G1208' => 'vmu', 'VMungo1383G1698' => 'vmu', 'Zm00001eb012270' => 'zma', 'Zm00001eb054100' => 'zma', 'Zm00001eb063350' => 'zma', 'Zm00001eb328560' => 'zma', 'Zm00001eb342820' => 'zma', 'Zm00001eb362210' => 'zma', 'Zm00001eb397730' => 'zma', 'Zm00001eb399750' => 'zma' ) $gf_id = 'HOM05D000959' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000959' ) $data_identifier = 'HOM05D000959' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 5, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 5, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 10, 'mbi' => (int) 3, 'mco' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 2, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 3, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 11, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399750' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000959', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '622', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p07100' => 'bna', 'A03p11720' => 'bna', 'A05p08300' => 'bna', 'A05p13380' => 'bna', 'A09p54130' => 'bna', 'A10p16690' => 'bna', 'A10p16700' => 'bna', 'A10p33390' => 'bna', 'Aa31LG10G16020' => 'aar', 'Aa31LG1G11810' => 'aar', 'Aa31LG1G11830' => 'aar', 'Aa31LG1G22510' => 'aar', 'Aa31LG5G4890' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5793' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2310' => 'aag', 'Actinidia08499' => 'ach', 'Actinidia11262' => 'ach', 'Actinidia23926' => 'ach', 'Actinidia34420' => 'ach', 'Actinidia36970' => 'ach', 'Ah.02g111220' => 'amhyb', 'Ah.15g097750' => 'amhyb', 'AL4G27500' => 'aly', 'AL6G11470' => 'aly', 'AL8G35950' => 'aly', 'AL8G35960' => 'aly', 'AL8G35970' => 'aly', 'Aqoxy1G00912' => 'aox', 'Aqoxy2G02253' => 'aox', 'Aqoxy2G02411' => 'aox', 'Aqoxy5G00485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BZ66YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K8ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM4FUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6BF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HFV7XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25JBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0YNNV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MAKK6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P70IT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP2Z6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V61LZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YWP64R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3S9AI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7PGHH' => 'arhy', 'AT2G32150' => 'ath', 'AT3G62040' => 'ath', 'AT5G02230' => 'ath', 'AT5G59480' => 'ath', 'AT5G59490' => 'ath', 'ATR0332G060' => 'atr', 'ATR0559G190' => 'atr', 'ATR0693G294' => 'atr', 'Atru.chr3.3975' => 'acertr', 'Atru.chr3.3976' => 'acertr', 'Atru.chr3.3977' => 'acertr', 'Atru.chr4.2498' => 'acertr', 'Atru.chr5.838' => 'acertr', 'Atru.chr8.1990' => 'acertr', 'Atru.chr8.1991' => 'acertr', 'Atru.chr8.1992' => 'acertr', 'AUR62001759' => 'cqu', 'AUR62009545' => 'cqu', 'AUR62010474' => 'cqu', 'AUR62025820' => 'cqu', 'AUR62030422' => 'cqu', 'AUR62033605' => 'cqu', 'AUR62038615' => 'cqu', 'AUR62041347' => 'cqu', 'BcaB01g04574' => 'bca', 'BcaB02g09263' => 'bca', 'BcaB02g10453' => 'bca', 'BcaB05g22513' => 'bca', 'BcaB08g36253' => 'bca', 'BcaB08g36254' => 'bca', 'BcaC01g06519' => 'bca', 'BcaC02g11889' => 'bca', 'BcaC03g14010' => 'bca', 'BcaC03g18439' => 'bca', 'BcaC04g19765' => 'bca', 'BcaC09g48432' => 'bca', 'BcaNung07302' => 'bca', 'BolC2t06040H' => 'bol', 'BolC2t07346H' => 'bol', 'BolC3t13817H' => 'bol', 'BolC4t22625H' => 'bol', 'BolC4t23297H' => 'bol', 'BolC8t51278H' => 'bol', 'BolC9t58050H' => 'bol', 'BolC9t58051H' => 'bol', 'BolC9t60163H' => 'bol', 'BraA02t04712Z' => 'bra', 'BraA02t05791Z' => 'bra', 'BraA03t10483Z' => 'bra', 'BraA05t19795Z' => 'bra', 'BraA05t20276Z' => 'bra', 'BraA09t40827Z' => 'bra', 'BraA10t43750Z' => 'bra', 'BraA10t43751Z' => 'bra', 'BraA10t45370Z' => 'bra', 'C02p00400' => 'bna', 'C02p12460' => 'bna', 'C03p13680' => 'bna', 'C04p10270' => 'bna', 'C04p17500' => 'bna', 'C08p37010' => 'bna', 'C09p51880' => 'bna', 'C09p51890' => 'bna', 'C09p74300' => 'bna', 'CAN.G179.26' => 'can', 'CAN.G3384.1' => 'can', 'CAN.G394.68' => 'can', 'CAN.G907.13' => 'can', 'CANSAT11G0012' => 'cansat', 'CANSAT25G1586' => 'cansat', 'CANSAT35G0735' => 'cansat', 'CANSAT54G0556' => 'cansat', 'CANSAT64G0356' => 'cansat', 'CANSAT78G2042' => 'cansat', 'CARHR125920' => 'chi', 'CARHR131910' => 'chi', 'CARHR172390' => 'chi', 'CARHR211140' => 'chi', 'CARHR285850' => 'chi', 'CARHR285860' => 'chi', 'Carub.0004s1347' => 'cru', 'Carub.0004s1960' => 'cru', 'Carub.0005s2880' => 'cru', 'Carub.0006s0107' => 'cru', 'Carub.0008s2015' => 'cru', 'Carub.0008s2016' => 'cru', 'Carub.0008s2017' => 'cru', 'Ca_01315_v3' => 'car', 'Ca_05063_v3' => 'car', 'Ca_10231_v3' => 'car', 'Ca_10913_v3' => 'car', 'Ca_19156_v3' => 'car', 'Ca_23644_v3' => 'car', 'Ca_26735_v3' => 'car', 'Cc01_g13130' => 'ccan', 'Cc02_g21690' => 'ccan', 'Cc03_g03600' => 'ccan', 'Cc06_g02510' => 'ccan', 'CDE02G1265' => 'cde', 'CDE05G0415' => 'cde', 'CDE08G1082' => 'cde', 'Cfa005780' => 'cfa', 'Cfa011522' => 'cfa', 'Cfa011523' => 'cfa', 'Cfa015627' => 'cfa', 'Cfa017359' => 'cfa', 'Ciclev10005687m.g' => 'ccl', 'Ciclev10012173m.g' => 'ccl', 'Ciclev10021621m.g' => 'ccl', 'Ciclev10028968m.g' => 'ccl', 'Ciclev10029907m.g' => 'ccl', 'CiPaw.01G164800' => 'cil', 'CiPaw.07G083700' => 'cil', 'CiPaw.07G127000' => 'cil', 'CiPaw.07G136900' => 'cil', 'CiPaw.08G081700' => 'cil', 'CiPaw.09G194600' => 'cil', 'CiPaw.10G146500' => 'cil', 'CiPaw.13G091500' => 'cil', 'CiPaw.13G091600' => 'cil', 'ClCG00G003390' => 'cla', 'ClCG01G007220' => 'cla', 'ClCG03G001370' => 'cla', 'ClCG04G008100' => 'cla', 'ClCG06G006110' => 'cla', 'ClCG06G006130' => 'cla', 'ClCG10G021210' => 'cla', 'COL.COLO4_07648' => 'col', 'COL.COLO4_07650' => 'col', 'COL.COLO4_07651' => 'col', 'COL.COLO4_14780' => 'col', 'COL.COLO4_18546' => 'col', 'COL.COLO4_18547' => 'col', 'COL.COLO4_23103' => 'col', 'COL.COLO4_30419' => 'col', 'COL.COLO4_34232' => 'col', 'Cpa.g.sc169.20' => 'cpa', 'Cpa.g.sc57.45' => 'cpa', 'Cpa.g.sc58.124' => 'cpa', 'Cpa.g.sc58.125' => 'cpa', 'Cpa.g.sc81.118' => 'cpa', 'Cpa.g.sc81.119' => 'cpa', 'Cre12.g524700' => 'cre', 'CsaV3_1G034430' => 'csa', 'CsaV3_1G034440' => 'csa', 'CsaV3_1G034450' => 'csa', 'CsaV3_3G034830' => 'csa', 'CsaV3_4G025090' => 'csa', 'CsaV3_5G018660' => 'csa', 'CsaV3_6G038160' => 'csa', 'CSS0003447' => 'camsi', 'CSS0017840' => 'camsi', 'CSS0019260' => 'camsi', 'CSS0040375' => 'camsi', 'CSS0042533' => 'camsi', 'DCAR_005960' => 'dca', 'DCAR_012104' => 'dca', 'DCAR_012105' => 'dca', 'DCAR_012293' => 'dca', 'DCAR_015632' => 'dca', 'DCAR_024602' => 'dca', 'DCAR_028752' => 'dca', 'Dinv06261' => 'din', 'Dinv13982' => 'din', 'Dinv17029' => 'din', 'Dinv18463' => 'din', 'Dinv33181' => 'din', 'Dinv35585' => 'din', 'Dinv37161' => 'din', 'Dinv42977' => 'din', 'Dinv43122' => 'din', 'Dinv44517' => 'din', 'Duzib093G0256' => 'dzi', 'Duzib106G1254' => 'dzi', 'Duzib128G1789' => 'dzi', 'Duzib133G0633' => 'dzi', 'Duzib138G0510' => 'dzi', 'Duzib150G1084' => 'dzi', 'Duzib168G0488' => 'dzi', 'Duzib168G1523' => 'dzi', 'Duzib170G0133' => 'dzi', 'ECA234G1433' => 'eca', 'ECA236G1432' => 'eca', 'ECA236G2256' => 'eca', 'ECA236G2365' => 'eca', 'ECA236G4830' => 'eca', 'ECA248G1505' => 'eca', 'EL10Ac3g06431' => 'bvu', 'EL10Ac5g12577' => 'bvu', 'EL10Ac6g13533' => 'bvu', 'EL10Ac7g16045' => 'bvu', 'Eucgr.A01281' => 'egr', 'Eucgr.B02326' => 'egr', 'Eucgr.H03532' => 'egr', 'Eucgr.K00553' => 'egr', 'Eucgr.K03116' => 'egr', 'FAN02G3963' => 'fan', 'FAN05G0438' => 'fan', 'FAN09G2434' => 'fan', 'FAN12G3984' => 'fan', 'FAN14G0798' => 'fan', 'FAN17G0652' => 'fan', 'FAN19G1988' => 'fan', 'FAN22G0632' => 'fan', 'FAN23G0387' => 'fan', 'FAN26G1323' => 'fan', 'FAN28G0666' => 'fan', 'FvH4_1g26080' => 'fve', 'FvH4_3g36780' => 'fve', 'FvH4_4g15270' => 'fve', 'FvH4_6g13490' => 'fve', 'Glyma.01G098700' => 'gma', 'Glyma.03G065900' => 'gma', 'Glyma.03G073754' => 'gma', 'Glyma.03G073758' => 'gma', 'Glyma.03G083200' => 'gma', 'Glyma.03G225500' => 'gma', 'Glyma.05G037766' => 'gma', 'Glyma.07G133500' => 'gma', 'Glyma.10G139400' => 'gma', 'Glyma.10G248900' => 'gma', 'Glyma.11G137800' => 'gma', 'Glyma.12G061300' => 'gma', 'Glyma.13G337900' => 'gma', 'Glyma.15G036600' => 'gma', 'Glyma.18G182800' => 'gma', 'Glyma.19G222500' => 'gma', 'Glyma.20G144800' => 'gma', 'Gohir.A01G222000' => 'ghi', 'Gohir.A03G044000' => 'ghi', 'Gohir.A03G044100' => 'ghi', 'Gohir.A04G083100' => 'ghi', 'Gohir.A07G127200' => 'ghi', 'Gohir.A07G132400' => 'ghi', 'Gohir.A08G000700' => 'ghi', 'Gohir.A11G327300' => 'ghi', 'Gohir.D01G211500' => 'ghi', 'Gohir.D03G123400' => 'ghi', 'Gohir.D03G123500' => 'ghi', 'Gohir.D04G121800' => 'ghi', 'Gohir.D07G131500' => 'ghi', 'Gohir.D07G136600' => 'ghi', 'Gohir.D08G011600' => 'ghi', 'Gohir.D11G346200' => 'ghi', 'Gorai.001G142800' => 'gra', 'Gorai.001G148700' => 'gra', 'Gorai.002G257300' => 'gra', 'Gorai.003G130000' => 'gra', 'Gorai.003G130100' => 'gra', 'Gorai.004G005300' => 'gra', 'Gorai.007G376500' => 'gra', 'Gorai.012G104700' => 'gra', 'GSVIVG01017946001' => 'vvi', 'GSVIVG01024928001' => 'vvi', 'GSVIVG01028227001' => 'vvi', 'GSVIVG01034151001' => 'vvi', 'HanXRQChr05g0135031' => 'han', 'HanXRQChr05g0135041' => 'han', 'HanXRQChr05g0140021' => 'han', 'HanXRQChr06g0178981' => 'han', 'HanXRQChr07g0188251' => 'han', 'HanXRQChr08g0235311' => 'han', 'HanXRQChr09g0271011' => 'han', 'HanXRQChr10g0293321' => 'han', 'HanXRQChr13g0388171' => 'han', 'Haze_00916' => 'cav', 'Haze_05063' => 'cav', 'Haze_20814' => 'cav', 'Haze_24128' => 'cav', 'Hma1.2p1_0745F.1_g212010' => 'hma', 'Hma1.2p1_0757F.1_g213260' => 'hma', 'Hma1.2p1_0936F.1_g238840' => 'hma', 'Hma1.2p1_1735F.1_g299890' => 'hma', 'Hma1.2p1_1861F.1_g305685' => 'hma', 'HPP92_003397' => 'vpl', 'HPP92_012597' => 'vpl', 'HPP92_015520' => 'vpl', 'HPP92_015539' => 'vpl', 'HPP92_020373' => 'vpl', 'Hund04938' => 'sun', 'Hund10677' => 'sun', 'Hund11033' => 'sun', 'Hund12155' => 'sun', 'Lalb_Chr01g0022551' => 'lal', 'Lalb_Chr03g0042341' => 'lal', 'Lalb_Chr07g0192931' => 'lal', 'Lalb_Chr12g0209551' => 'lal', 'Lalb_Chr19g0125251' => 'lal', 'Lalb_Chr19g0137891' => 'lal', 'Lalb_Chr21g0304641' => 'lal', 'Lalb_Chr21g0309881' => 'lal', 'Lj1A5T12' => 'lonja', 'Lj1C148G10' => 'lonja', 'Lj2A93T83' => 'lonja', 'Lj3A738G68' => 'lonja', 'Lj3C966T1' => 'lonja', 'Lj3g0018958' => 'lja', 'Lj3g0021831' => 'lja', 'Lj3g0025443' => 'lja', 'Lj4g0026809' => 'lja', 'Lj5g0012558' => 'lja', 'Lj5g0021586' => 'lja', 'Lsat_1_v5_gn_5_156840' => 'lsa', 'Lsat_1_v5_gn_8_73460' => 'lsa', 'Lsat_1_v5_gn_8_73481' => 'lsa', 'Lsat_1_v5_gn_9_31601' => 'lsa', 'Lsat_1_v5_gn_9_77320' => 'lsa', 'Manes.01G171300' => 'mes', 'Manes.01G171400' => 'mes', 'Manes.01G236100' => 'mes', 'Manes.02G130500' => 'mes', 'Manes.02G130600' => 'mes', 'Manes.03G180200' => 'mes', 'Manes.05G007000' => 'mes', 'Manes.08G084400' => 'mes', 'Manes.09G092600' => 'mes', 'Manes.15G027900' => 'mes', 'MBI04_g40948_MAGBIO' => 'mbi', 'MBI14_g12123_MAGBIO' => 'mbi', 'MBI18_g28915_MAGBIO' => 'mbi', 'MCO09G053' => 'mco', 'MCO11G782' => 'mco', 'MCO15G215' => 'mco', 'MD03G1088500' => 'mdo', 'MD03G1088600' => 'mdo', 'MD04G1130800' => 'mdo', 'MD09G1291700' => 'mdo', 'MD11G1097500' => 'mdo', 'MD11G1097600' => 'mdo', 'MD12G1143900' => 'mdo', 'MD13G1191400' => 'mdo', 'MD16G1191500' => 'mdo', 'Medtr1g085570' => 'mtr', 'Medtr1g104610' => 'mtr', 'Medtr2g097520' => 'mtr', 'Medtr4g021800' => 'mtr', 'Medtr4g021825' => 'mtr', 'Medtr4g064270' => 'mtr', 'Medtr4g064380' => 'mtr', 'Medtr7g062150' => 'mtr', 'MELO3C003138.2' => 'cme', 'MELO3C005187.2' => 'cme', 'MELO3C009252.2' => 'cme', 'MELO3C014481.2' => 'cme', 'MELO3C020616.2' => 'cme', 'MELO3C020617.2' => 'cme', 'MELO3C020618.2' => 'cme', 'Migut.G00328' => 'egut', 'Migut.J00320' => 'egut', 'Migut.L01000' => 'egut', 'Migut.L01953' => 'egut', 'MSTRG.10253' => 'ama', 'MSTRG.19077' => 'ama', 'MSTRG.26780' => 'ama', 'MSTRG.4023' => 'ama', 'MSTRG.5655' => 'ama', 'MSTRG.9992' => 'ama', 'Nitab4.5_0000043g0310' => 'nta', 'Nitab4.5_0000463g0080' => 'nta', 'Nitab4.5_0000705g0170' => 'nta', 'Nitab4.5_0001326g0060' => 'nta', 'Nitab4.5_0001628g0030' => 'nta', 'Nitab4.5_0002103g0110' => 'nta', 'Nitab4.5_0002946g0030' => 'nta', 'Nitab4.5_0004639g0030' => 'nta', 'Nn2g11149' => 'nnu', 'Nn2g13389' => 'nnu', 'Nn4g25326' => 'nnu', 'Nn4g26290' => 'nnu', 'Nn5g29865' => 'nnu', 'Oeu004163.1' => 'oeu', 'Oeu006901.1' => 'oeu', 'Oeu010096.1' => 'oeu', 'Oeu024340.1' => 'oeu', 'Oeu048369.1' => 'oeu', 'Os01g0973000' => 'osa', 'Os03g0273800' => 'osa', 'Os03g0701200' => 'osa', 'Os03g0834050' => 'osa', 'Os07g0634400' => 'osa', 'Peaxi162Scf00092g01414' => 'pax', 'Peaxi162Scf00165g00818' => 'pax', 'Peaxi162Scf00309g00516' => 'pax', 'Peaxi162Scf00774g00218' => 'pax', 'PGR004G1824' => 'pgr', 'PGR004G2606' => 'pgr', 'PGR031G2716' => 'pgr', 'PGR102G2460' => 'pgr', 'PGR142G2599' => 'pgr', 'PGSC0003DMG400000843' => 'stu', 'PGSC0003DMG400008829' => 'stu', 'PGSC0003DMG400030418' => 'stu', 'PGSC0003DMG400031834' => 'stu', 'PGSC0003DMG401028300' => 'stu', 'PGSC0003DMG402028300' => 'stu', 'Phvul.001G219300' => 'pvu', 'Phvul.007G056000' => 'pvu', 'Phvul.007G208000' => 'pvu', 'Phvul.008G119500' => 'pvu', 'Phvul.010G011200' => 'pvu', 'Phvul.010G014800' => 'pvu', 'Phvul.011G062900' => 'pvu', 'Phvul.L007043' => 'pvu', 'Potri.001G242300' => 'ptr', 'Potri.002G185300' => 'ptr', 'Potri.006G086900' => 'ptr', 'Potri.008G151700' => 'ptr', 'Potri.009G033500' => 'ptr', 'Potri.010G089300' => 'ptr', 'Potri.014G110800' => 'ptr', 'Pp3c27_8130' => 'ppa', 'Pp3c6_27410' => 'ppa', 'PRCOL_00001659' => 'pco', 'PRCOL_00001927' => 'pco', 'PRCOL_00003649' => 'pco', 'Prupe.1G011600' => 'ppe', 'Prupe.3G000800' => 'ppe', 'Prupe.3G001100' => 'ppe', 'Prupe.6G072700' => 'ppe', 'Prupe.6G072800' => 'ppe', 'Prupe.6G257300' => 'ppe', 'Prupe.8G033000' => 'ppe', 'Psat0s2633g0080' => 'psa', 'Psat0s3396g0080' => 'psa', 'Psat0s3396g0200' => 'psa', 'Psat3g139080' => 'psa', 'Psat5g285080' => 'psa', 'Psat6g157760' => 'psa', 'Psat6g208440' => 'psa', 'Psat7g215320' => 'psa', 'Psat7g215400' => 'psa', 'Psat7g235600' => 'psa', 'Psat7g235760' => 'psa', 'PSO063G4603' => 'pso', 'PSO210G0182' => 'pso', 'PSO210G0196' => 'pso', 'PSO339G0394' => 'pso', 'PSO339G4127' => 'pso', 'PSO513G0064' => 'pso', 'PSO761G0079' => 'pso', 'QL01p031003' => 'qlo', 'QL01p031078' => 'qlo', 'QL06p003004' => 'qlo', 'QL07p048731' => 'qlo', 'QL09p037427' => 'qlo', 'RcHm_v2.0_Chr3g0466361' => 'rch', 'RcHm_v2.0_Chr3g0485571' => 'rch', 'RcHm_v2.0_Chr4g0416551' => 'rch', 'RcHm_v2.0_Chr5g0065831' => 'rch', 'Rhsim01G0230500' => 'rsi', 'Rhsim05G0194000' => 'rsi', 'Rhsim08G0250400' => 'rsi', 'Sabra02G0131000' => 'sbr', 'Sabra06G0066300' => 'sbr', 'Sabra08G0115500' => 'sbr', 'Sabra09G0023900' => 'sbr', 'Sabra10G0054000' => 'sbr', 'Sabra14G0081500' => 'sbr', 'Sabra16G0147100' => 'sbr', 'SalBow2G2957' => 'sbo', 'SalBow4G3320' => 'sbo', 'SalBow8G1894' => 'sbo', 'Sc07g0007950' => 'sci', 'Sc12g0001360' => 'sci', 'Sc13g0004330' => 'sci', 'Sc20g0005010' => 'sci', 'Sed0000361' => 'sed', 'Sed0001706' => 'sed', 'Sed0002422' => 'sed', 'Sed0004029' => 'sed', 'Sed0004602' => 'sed', 'Sed0004943' => 'sed', 'Sed0008646' => 'sed', 'Sed0023313' => 'sed', 'Sed0024843' => 'sed', 'SEGI_00081' => 'sgi', 'SEGI_00947' => 'sgi', 'SEGI_04046' => 'sgi', 'SEGI_06880' => 'sgi', 'SEGI_09736' => 'sgi', 'SEGI_12741' => 'sgi', 'SEGI_14530' => 'sgi', 'SEGI_20705' => 'sgi', 'SEGI_26088' => 'sgi', 'SEGI_28323' => 'sgi', 'SEGI_33343' => 'sgi', 'SGA_v2.0_scaffold126G33775' => 'sas', 'SGA_v2.0_scaffold2G01337' => 'sas', 'SGA_v2.0_scaffold38G15006' => 'sas', 'SGA_v2.0_scaffold39G15264' => 'sas', 'SGA_v2.0_scaffold453G51880' => 'sas', 'SHI12696' => 'shi', 'SMO367G1096' => 'smo', 'Solyc01g068630.3' => 'sly', 'Solyc05g011880.3' => 'sly', 'Solyc06g076300.3' => 'sly', 'Solyc09g010940.4' => 'sly', 'Solyc09g075890.3' => 'sly', 'Sopen01g030560' => 'spe', 'Sopen05g006630' => 'spe', 'Sopen06g032720' => 'spe', 'Sopen09g005660' => 'spe', 'Sopen09g030690' => 'spe', 'Sp4g14540' => 'spa', 'Sp4g20030' => 'spa', 'Sp5g01320' => 'spa', 'Sp6g21170' => 'spa', 'Sp6g21180' => 'spa', 'Sp6g21190' => 'spa', 'Sp6g40220' => 'spa', 'TAR362G0122' => 'tar', 'TAR362G1338' => 'tar', 'TAR369G0590' => 'tar', 'TAR371G0824' => 'tar', 'TAR622G1429' => 'tar', 'TAR623G0734' => 'tar', 'TAR625G0441' => 'tar', 'TAR629G0976' => 'tar', 'TAR633G1195' => 'tar', 'TAR636G2660' => 'tar', 'THA.LOC104799440' => 'tha', 'THA.LOC104800966' => 'tha', 'THA.LOC104806559' => 'tha', 'THA.LOC104810765' => 'tha', 'THA.LOC104816266' => 'tha', 'THA.LOC104817419' => 'tha', 'THA.LOC104827021' => 'tha', 'Thecc.01G327400' => 'tca', 'Thecc.04G229200' => 'tca', 'Thecc.05G037400' => 'tca', 'Thecc.09G318600' => 'tca', 'Thecc.09G318700' => 'tca', 'Thhalv10006238m.g' => 'esa', 'Thhalv10014321m.g' => 'esa', 'Thhalv10014335m.g' => 'esa', 'Thhalv10015826m.g' => 'esa', 'Thhalv10017107m.g' => 'esa', 'Thhalv10017180m.g' => 'esa', 'Thhalv10029339m.g' => 'esa', 'TPR.G1699' => 'tpr', 'TPR.G23609' => 'tpr', 'TPR.G3081' => 'tpr', 'TPR.G40397' => 'tpr', 'TPR.G5522' => 'tpr', 'TPR.G5618' => 'tpr', 'TPR.G5626' => 'tpr', 'TWI09G1632' => 'twi', 'TWI23G1230' => 'twi', 'TWI53G1064' => 'twi', 'TWI59G0751' => 'twi', 'TWI74G0947' => 'twi', 'TWI77G0337' => 'twi', 'TWI79G1254' => 'twi', 'unitig_0.g2341' => 'ugi', 'unitig_26.g10006' => 'ugi', 'unitig_26.g10008' => 'ugi', 'unitig_26.g9192' => 'ugi', 'vmacro14547' => 'vma', 'vmacro15333' => 'vma', 'vmacro18743' => 'vma', 'vmacro20166' => 'vma', 'VMungo0331G0523' => 'vmu', 'VMungo0331G1202' => 'vmu', 'VMungo0720G1228' => 'vmu', 'VMungo0720G1514' => 'vmu', 'VMungo1080G0169' => 'vmu', 'VMungo1127G1475' => 'vmu', 'VMungo1383G1208' => 'vmu', 'VMungo1383G1698' => 'vmu', 'Zm00001eb012270' => 'zma', 'Zm00001eb054100' => 'zma', 'Zm00001eb063350' => 'zma', 'Zm00001eb328560' => 'zma', 'Zm00001eb342820' => 'zma', 'Zm00001eb362210' => 'zma', 'Zm00001eb397730' => 'zma', 'Zm00001eb399750' => 'zma' ), 'gf_id' => 'HOM05D000959', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000959' ), 'data_identifier' => 'HOM05D000959', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000959', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '622', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p07100' => 'bna', 'A03p11720' => 'bna', 'A05p08300' => 'bna', 'A05p13380' => 'bna', 'A09p54130' => 'bna', 'A10p16690' => 'bna', 'A10p16700' => 'bna', 'A10p33390' => 'bna', 'Aa31LG10G16020' => 'aar', 'Aa31LG1G11810' => 'aar', 'Aa31LG1G11830' => 'aar', 'Aa31LG1G22510' => 'aar', 'Aa31LG5G4890' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5793' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2310' => 'aag', 'Actinidia08499' => 'ach', 'Actinidia11262' => 'ach', 'Actinidia23926' => 'ach', 'Actinidia34420' => 'ach', 'Actinidia36970' => 'ach', 'Ah.02g111220' => 'amhyb', 'Ah.15g097750' => 'amhyb', 'AL4G27500' => 'aly', 'AL6G11470' => 'aly', 'AL8G35950' => 'aly', 'AL8G35960' => 'aly', 'AL8G35970' => 'aly', 'Aqoxy1G00912' => 'aox', 'Aqoxy2G02253' => 'aox', 'Aqoxy2G02411' => 'aox', 'Aqoxy5G00485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BZ66YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K8ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM4FUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6BF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HFV7XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25JBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0YNNV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MAKK6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P70IT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP2Z6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V61LZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YWP64R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3S9AI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7PGHH' => 'arhy', 'AT2G32150' => 'ath', 'AT3G62040' => 'ath', 'AT5G02230' => 'ath', 'AT5G59480' => 'ath', 'AT5G59490' => 'ath', 'ATR0332G060' => 'atr', 'ATR0559G190' => 'atr', 'ATR0693G294' => 'atr', 'Atru.chr3.3975' => 'acertr', 'Atru.chr3.3976' => 'acertr', 'Atru.chr3.3977' => 'acertr', 'Atru.chr4.2498' => 'acertr', 'Atru.chr5.838' => 'acertr', 'Atru.chr8.1990' => 'acertr', 'Atru.chr8.1991' => 'acertr', 'Atru.chr8.1992' => 'acertr', 'AUR62001759' => 'cqu', 'AUR62009545' => 'cqu', 'AUR62010474' => 'cqu', 'AUR62025820' => 'cqu', 'AUR62030422' => 'cqu', 'AUR62033605' => 'cqu', 'AUR62038615' => 'cqu', 'AUR62041347' => 'cqu', 'BcaB01g04574' => 'bca', 'BcaB02g09263' => 'bca', 'BcaB02g10453' => 'bca', 'BcaB05g22513' => 'bca', 'BcaB08g36253' => 'bca', 'BcaB08g36254' => 'bca', 'BcaC01g06519' => 'bca', 'BcaC02g11889' => 'bca', 'BcaC03g14010' => 'bca', 'BcaC03g18439' => 'bca', 'BcaC04g19765' => 'bca', 'BcaC09g48432' => 'bca', 'BcaNung07302' => 'bca', 'BolC2t06040H' => 'bol', 'BolC2t07346H' => 'bol', 'BolC3t13817H' => 'bol', 'BolC4t22625H' => 'bol', 'BolC4t23297H' => 'bol', 'BolC8t51278H' => 'bol', 'BolC9t58050H' => 'bol', 'BolC9t58051H' => 'bol', 'BolC9t60163H' => 'bol', 'BraA02t04712Z' => 'bra', 'BraA02t05791Z' => 'bra', 'BraA03t10483Z' => 'bra', 'BraA05t19795Z' => 'bra', 'BraA05t20276Z' => 'bra', 'BraA09t40827Z' => 'bra', 'BraA10t43750Z' => 'bra', 'BraA10t43751Z' => 'bra', 'BraA10t45370Z' => 'bra', 'C02p00400' => 'bna', 'C02p12460' => 'bna', 'C03p13680' => 'bna', 'C04p10270' => 'bna', 'C04p17500' => 'bna', 'C08p37010' => 'bna', 'C09p51880' => 'bna', 'C09p51890' => 'bna', 'C09p74300' => 'bna', 'CAN.G179.26' => 'can', 'CAN.G3384.1' => 'can', 'CAN.G394.68' => 'can', 'CAN.G907.13' => 'can', 'CANSAT11G0012' => 'cansat', 'CANSAT25G1586' => 'cansat', 'CANSAT35G0735' => 'cansat', 'CANSAT54G0556' => 'cansat', 'CANSAT64G0356' => 'cansat', 'CANSAT78G2042' => 'cansat', 'CARHR125920' => 'chi', 'CARHR131910' => 'chi', 'CARHR172390' => 'chi', 'CARHR211140' => 'chi', 'CARHR285850' => 'chi', 'CARHR285860' => 'chi', 'Carub.0004s1347' => 'cru', 'Carub.0004s1960' => 'cru', 'Carub.0005s2880' => 'cru', 'Carub.0006s0107' => 'cru', 'Carub.0008s2015' => 'cru', 'Carub.0008s2016' => 'cru', 'Carub.0008s2017' => 'cru', 'Ca_01315_v3' => 'car', 'Ca_05063_v3' => 'car', 'Ca_10231_v3' => 'car', 'Ca_10913_v3' => 'car', 'Ca_19156_v3' => 'car', 'Ca_23644_v3' => 'car', 'Ca_26735_v3' => 'car', 'Cc01_g13130' => 'ccan', 'Cc02_g21690' => 'ccan', 'Cc03_g03600' => 'ccan', 'Cc06_g02510' => 'ccan', 'CDE02G1265' => 'cde', 'CDE05G0415' => 'cde', 'CDE08G1082' => 'cde', 'Cfa005780' => 'cfa', 'Cfa011522' => 'cfa', 'Cfa011523' => 'cfa', 'Cfa015627' => 'cfa', 'Cfa017359' => 'cfa', 'Ciclev10005687m.g' => 'ccl', 'Ciclev10012173m.g' => 'ccl', 'Ciclev10021621m.g' => 'ccl', 'Ciclev10028968m.g' => 'ccl', 'Ciclev10029907m.g' => 'ccl', 'CiPaw.01G164800' => 'cil', 'CiPaw.07G083700' => 'cil', 'CiPaw.07G127000' => 'cil', 'CiPaw.07G136900' => 'cil', 'CiPaw.08G081700' => 'cil', 'CiPaw.09G194600' => 'cil', 'CiPaw.10G146500' => 'cil', 'CiPaw.13G091500' => 'cil', 'CiPaw.13G091600' => 'cil', 'ClCG00G003390' => 'cla', 'ClCG01G007220' => 'cla', 'ClCG03G001370' => 'cla', 'ClCG04G008100' => 'cla', 'ClCG06G006110' => 'cla', 'ClCG06G006130' => 'cla', 'ClCG10G021210' => 'cla', 'COL.COLO4_07648' => 'col', 'COL.COLO4_07650' => 'col', 'COL.COLO4_07651' => 'col', 'COL.COLO4_14780' => 'col', 'COL.COLO4_18546' => 'col', 'COL.COLO4_18547' => 'col', 'COL.COLO4_23103' => 'col', 'COL.COLO4_30419' => 'col', 'COL.COLO4_34232' => 'col', 'Cpa.g.sc169.20' => 'cpa', 'Cpa.g.sc57.45' => 'cpa', 'Cpa.g.sc58.124' => 'cpa', 'Cpa.g.sc58.125' => 'cpa', 'Cpa.g.sc81.118' => 'cpa', 'Cpa.g.sc81.119' => 'cpa', 'Cre12.g524700' => 'cre', 'CsaV3_1G034430' => 'csa', 'CsaV3_1G034440' => 'csa', 'CsaV3_1G034450' => 'csa', 'CsaV3_3G034830' => 'csa', 'CsaV3_4G025090' => 'csa', 'CsaV3_5G018660' => 'csa', 'CsaV3_6G038160' => 'csa', 'CSS0003447' => 'camsi', 'CSS0017840' => 'camsi', 'CSS0019260' => 'camsi', 'CSS0040375' => 'camsi', 'CSS0042533' => 'camsi', 'DCAR_005960' => 'dca', 'DCAR_012104' => 'dca', 'DCAR_012105' => 'dca', 'DCAR_012293' => 'dca', 'DCAR_015632' => 'dca', 'DCAR_024602' => 'dca', 'DCAR_028752' => 'dca', 'Dinv06261' => 'din', 'Dinv13982' => 'din', 'Dinv17029' => 'din', 'Dinv18463' => 'din', 'Dinv33181' => 'din', 'Dinv35585' => 'din', 'Dinv37161' => 'din', 'Dinv42977' => 'din', 'Dinv43122' => 'din', 'Dinv44517' => 'din', 'Duzib093G0256' => 'dzi', 'Duzib106G1254' => 'dzi', 'Duzib128G1789' => 'dzi', 'Duzib133G0633' => 'dzi', 'Duzib138G0510' => 'dzi', 'Duzib150G1084' => 'dzi', 'Duzib168G0488' => 'dzi', 'Duzib168G1523' => 'dzi', 'Duzib170G0133' => 'dzi', 'ECA234G1433' => 'eca', 'ECA236G1432' => 'eca', 'ECA236G2256' => 'eca', 'ECA236G2365' => 'eca', 'ECA236G4830' => 'eca', 'ECA248G1505' => 'eca', 'EL10Ac3g06431' => 'bvu', 'EL10Ac5g12577' => 'bvu', 'EL10Ac6g13533' => 'bvu', 'EL10Ac7g16045' => 'bvu', 'Eucgr.A01281' => 'egr', 'Eucgr.B02326' => 'egr', 'Eucgr.H03532' => 'egr', 'Eucgr.K00553' => 'egr', 'Eucgr.K03116' => 'egr', 'FAN02G3963' => 'fan', 'FAN05G0438' => 'fan', 'FAN09G2434' => 'fan', 'FAN12G3984' => 'fan', 'FAN14G0798' => 'fan', 'FAN17G0652' => 'fan', 'FAN19G1988' => 'fan', 'FAN22G0632' => 'fan', 'FAN23G0387' => 'fan', 'FAN26G1323' => 'fan', 'FAN28G0666' => 'fan', 'FvH4_1g26080' => 'fve', 'FvH4_3g36780' => 'fve', 'FvH4_4g15270' => 'fve', 'FvH4_6g13490' => 'fve', 'Glyma.01G098700' => 'gma', 'Glyma.03G065900' => 'gma', 'Glyma.03G073754' => 'gma', 'Glyma.03G073758' => 'gma', 'Glyma.03G083200' => 'gma', 'Glyma.03G225500' => 'gma', 'Glyma.05G037766' => 'gma', 'Glyma.07G133500' => 'gma', 'Glyma.10G139400' => 'gma', 'Glyma.10G248900' => 'gma', 'Glyma.11G137800' => 'gma', 'Glyma.12G061300' => 'gma', 'Glyma.13G337900' => 'gma', 'Glyma.15G036600' => 'gma', 'Glyma.18G182800' => 'gma', 'Glyma.19G222500' => 'gma', 'Glyma.20G144800' => 'gma', 'Gohir.A01G222000' => 'ghi', 'Gohir.A03G044000' => 'ghi', 'Gohir.A03G044100' => 'ghi', 'Gohir.A04G083100' => 'ghi', 'Gohir.A07G127200' => 'ghi', 'Gohir.A07G132400' => 'ghi', 'Gohir.A08G000700' => 'ghi', 'Gohir.A11G327300' => 'ghi', 'Gohir.D01G211500' => 'ghi', 'Gohir.D03G123400' => 'ghi', 'Gohir.D03G123500' => 'ghi', 'Gohir.D04G121800' => 'ghi', 'Gohir.D07G131500' => 'ghi', 'Gohir.D07G136600' => 'ghi', 'Gohir.D08G011600' => 'ghi', 'Gohir.D11G346200' => 'ghi', 'Gorai.001G142800' => 'gra', 'Gorai.001G148700' => 'gra', 'Gorai.002G257300' => 'gra', 'Gorai.003G130000' => 'gra', 'Gorai.003G130100' => 'gra', 'Gorai.004G005300' => 'gra', 'Gorai.007G376500' => 'gra', 'Gorai.012G104700' => 'gra', 'GSVIVG01017946001' => 'vvi', 'GSVIVG01024928001' => 'vvi', 'GSVIVG01028227001' => 'vvi', 'GSVIVG01034151001' => 'vvi', 'HanXRQChr05g0135031' => 'han', 'HanXRQChr05g0135041' => 'han', 'HanXRQChr05g0140021' => 'han', 'HanXRQChr06g0178981' => 'han', 'HanXRQChr07g0188251' => 'han', 'HanXRQChr08g0235311' => 'han', 'HanXRQChr09g0271011' => 'han', 'HanXRQChr10g0293321' => 'han', 'HanXRQChr13g0388171' => 'han', 'Haze_00916' => 'cav', 'Haze_05063' => 'cav', 'Haze_20814' => 'cav', 'Haze_24128' => 'cav', 'Hma1.2p1_0745F.1_g212010' => 'hma', 'Hma1.2p1_0757F.1_g213260' => 'hma', 'Hma1.2p1_0936F.1_g238840' => 'hma', 'Hma1.2p1_1735F.1_g299890' => 'hma', 'Hma1.2p1_1861F.1_g305685' => 'hma', 'HPP92_003397' => 'vpl', 'HPP92_012597' => 'vpl', 'HPP92_015520' => 'vpl', 'HPP92_015539' => 'vpl', 'HPP92_020373' => 'vpl', 'Hund04938' => 'sun', 'Hund10677' => 'sun', 'Hund11033' => 'sun', 'Hund12155' => 'sun', 'Lalb_Chr01g0022551' => 'lal', 'Lalb_Chr03g0042341' => 'lal', 'Lalb_Chr07g0192931' => 'lal', 'Lalb_Chr12g0209551' => 'lal', 'Lalb_Chr19g0125251' => 'lal', 'Lalb_Chr19g0137891' => 'lal', 'Lalb_Chr21g0304641' => 'lal', 'Lalb_Chr21g0309881' => 'lal', 'Lj1A5T12' => 'lonja', 'Lj1C148G10' => 'lonja', 'Lj2A93T83' => 'lonja', 'Lj3A738G68' => 'lonja', 'Lj3C966T1' => 'lonja', 'Lj3g0018958' => 'lja', 'Lj3g0021831' => 'lja', 'Lj3g0025443' => 'lja', 'Lj4g0026809' => 'lja', 'Lj5g0012558' => 'lja', 'Lj5g0021586' => 'lja', 'Lsat_1_v5_gn_5_156840' => 'lsa', 'Lsat_1_v5_gn_8_73460' => 'lsa', 'Lsat_1_v5_gn_8_73481' => 'lsa', 'Lsat_1_v5_gn_9_31601' => 'lsa', 'Lsat_1_v5_gn_9_77320' => 'lsa', 'Manes.01G171300' => 'mes', 'Manes.01G171400' => 'mes', 'Manes.01G236100' => 'mes', 'Manes.02G130500' => 'mes', 'Manes.02G130600' => 'mes', 'Manes.03G180200' => 'mes', 'Manes.05G007000' => 'mes', 'Manes.08G084400' => 'mes', 'Manes.09G092600' => 'mes', 'Manes.15G027900' => 'mes', 'MBI04_g40948_MAGBIO' => 'mbi', 'MBI14_g12123_MAGBIO' => 'mbi', 'MBI18_g28915_MAGBIO' => 'mbi', 'MCO09G053' => 'mco', 'MCO11G782' => 'mco', 'MCO15G215' => 'mco', 'MD03G1088500' => 'mdo', 'MD03G1088600' => 'mdo', 'MD04G1130800' => 'mdo', 'MD09G1291700' => 'mdo', 'MD11G1097500' => 'mdo', 'MD11G1097600' => 'mdo', 'MD12G1143900' => 'mdo', 'MD13G1191400' => 'mdo', 'MD16G1191500' => 'mdo', 'Medtr1g085570' => 'mtr', 'Medtr1g104610' => 'mtr', 'Medtr2g097520' => 'mtr', 'Medtr4g021800' => 'mtr', 'Medtr4g021825' => 'mtr', 'Medtr4g064270' => 'mtr', 'Medtr4g064380' => 'mtr', 'Medtr7g062150' => 'mtr', 'MELO3C003138.2' => 'cme', 'MELO3C005187.2' => 'cme', 'MELO3C009252.2' => 'cme', 'MELO3C014481.2' => 'cme', 'MELO3C020616.2' => 'cme', 'MELO3C020617.2' => 'cme', 'MELO3C020618.2' => 'cme', 'Migut.G00328' => 'egut', 'Migut.J00320' => 'egut', 'Migut.L01000' => 'egut', 'Migut.L01953' => 'egut', 'MSTRG.10253' => 'ama', 'MSTRG.19077' => 'ama', 'MSTRG.26780' => 'ama', 'MSTRG.4023' => 'ama', 'MSTRG.5655' => 'ama', 'MSTRG.9992' => 'ama', 'Nitab4.5_0000043g0310' => 'nta', 'Nitab4.5_0000463g0080' => 'nta', 'Nitab4.5_0000705g0170' => 'nta', 'Nitab4.5_0001326g0060' => 'nta', 'Nitab4.5_0001628g0030' => 'nta', 'Nitab4.5_0002103g0110' => 'nta', 'Nitab4.5_0002946g0030' => 'nta', 'Nitab4.5_0004639g0030' => 'nta', 'Nn2g11149' => 'nnu', 'Nn2g13389' => 'nnu', 'Nn4g25326' => 'nnu', 'Nn4g26290' => 'nnu', 'Nn5g29865' => 'nnu', 'Oeu004163.1' => 'oeu', 'Oeu006901.1' => 'oeu', 'Oeu010096.1' => 'oeu', 'Oeu024340.1' => 'oeu', 'Oeu048369.1' => 'oeu', 'Os01g0973000' => 'osa', 'Os03g0273800' => 'osa', 'Os03g0701200' => 'osa', 'Os03g0834050' => 'osa', 'Os07g0634400' => 'osa', 'Peaxi162Scf00092g01414' => 'pax', 'Peaxi162Scf00165g00818' => 'pax', 'Peaxi162Scf00309g00516' => 'pax', 'Peaxi162Scf00774g00218' => 'pax', 'PGR004G1824' => 'pgr', 'PGR004G2606' => 'pgr', 'PGR031G2716' => 'pgr', 'PGR102G2460' => 'pgr', 'PGR142G2599' => 'pgr', 'PGSC0003DMG400000843' => 'stu', 'PGSC0003DMG400008829' => 'stu', 'PGSC0003DMG400030418' => 'stu', 'PGSC0003DMG400031834' => 'stu', 'PGSC0003DMG401028300' => 'stu', 'PGSC0003DMG402028300' => 'stu', 'Phvul.001G219300' => 'pvu', 'Phvul.007G056000' => 'pvu', 'Phvul.007G208000' => 'pvu', 'Phvul.008G119500' => 'pvu', 'Phvul.010G011200' => 'pvu', 'Phvul.010G014800' => 'pvu', 'Phvul.011G062900' => 'pvu', 'Phvul.L007043' => 'pvu', 'Potri.001G242300' => 'ptr', 'Potri.002G185300' => 'ptr', 'Potri.006G086900' => 'ptr', 'Potri.008G151700' => 'ptr', 'Potri.009G033500' => 'ptr', 'Potri.010G089300' => 'ptr', 'Potri.014G110800' => 'ptr', 'Pp3c27_8130' => 'ppa', 'Pp3c6_27410' => 'ppa', 'PRCOL_00001659' => 'pco', 'PRCOL_00001927' => 'pco', 'PRCOL_00003649' => 'pco', 'Prupe.1G011600' => 'ppe', 'Prupe.3G000800' => 'ppe', 'Prupe.3G001100' => 'ppe', 'Prupe.6G072700' => 'ppe', 'Prupe.6G072800' => 'ppe', 'Prupe.6G257300' => 'ppe', 'Prupe.8G033000' => 'ppe', 'Psat0s2633g0080' => 'psa', 'Psat0s3396g0080' => 'psa', 'Psat0s3396g0200' => 'psa', 'Psat3g139080' => 'psa', 'Psat5g285080' => 'psa', 'Psat6g157760' => 'psa', 'Psat6g208440' => 'psa', 'Psat7g215320' => 'psa', 'Psat7g215400' => 'psa', 'Psat7g235600' => 'psa', 'Psat7g235760' => 'psa', 'PSO063G4603' => 'pso', 'PSO210G0182' => 'pso', 'PSO210G0196' => 'pso', 'PSO339G0394' => 'pso', 'PSO339G4127' => 'pso', 'PSO513G0064' => 'pso', 'PSO761G0079' => 'pso', 'QL01p031003' => 'qlo', 'QL01p031078' => 'qlo', 'QL06p003004' => 'qlo', 'QL07p048731' => 'qlo', 'QL09p037427' => 'qlo', 'RcHm_v2.0_Chr3g0466361' => 'rch', 'RcHm_v2.0_Chr3g0485571' => 'rch', 'RcHm_v2.0_Chr4g0416551' => 'rch', 'RcHm_v2.0_Chr5g0065831' => 'rch', 'Rhsim01G0230500' => 'rsi', 'Rhsim05G0194000' => 'rsi', 'Rhsim08G0250400' => 'rsi', 'Sabra02G0131000' => 'sbr', 'Sabra06G0066300' => 'sbr', 'Sabra08G0115500' => 'sbr', 'Sabra09G0023900' => 'sbr', 'Sabra10G0054000' => 'sbr', 'Sabra14G0081500' => 'sbr', 'Sabra16G0147100' => 'sbr', 'SalBow2G2957' => 'sbo', 'SalBow4G3320' => 'sbo', 'SalBow8G1894' => 'sbo', 'Sc07g0007950' => 'sci', 'Sc12g0001360' => 'sci', 'Sc13g0004330' => 'sci', 'Sc20g0005010' => 'sci', 'Sed0000361' => 'sed', 'Sed0001706' => 'sed', 'Sed0002422' => 'sed', 'Sed0004029' => 'sed', 'Sed0004602' => 'sed', 'Sed0004943' => 'sed', 'Sed0008646' => 'sed', 'Sed0023313' => 'sed', 'Sed0024843' => 'sed', 'SEGI_00081' => 'sgi', 'SEGI_00947' => 'sgi', 'SEGI_04046' => 'sgi', 'SEGI_06880' => 'sgi', 'SEGI_09736' => 'sgi', 'SEGI_12741' => 'sgi', 'SEGI_14530' => 'sgi', 'SEGI_20705' => 'sgi', 'SEGI_26088' => 'sgi', 'SEGI_28323' => 'sgi', 'SEGI_33343' => 'sgi', 'SGA_v2.0_scaffold126G33775' => 'sas', 'SGA_v2.0_scaffold2G01337' => 'sas', 'SGA_v2.0_scaffold38G15006' => 'sas', 'SGA_v2.0_scaffold39G15264' => 'sas', 'SGA_v2.0_scaffold453G51880' => 'sas', 'SHI12696' => 'shi', 'SMO367G1096' => 'smo', 'Solyc01g068630.3' => 'sly', 'Solyc05g011880.3' => 'sly', 'Solyc06g076300.3' => 'sly', 'Solyc09g010940.4' => 'sly', 'Solyc09g075890.3' => 'sly', 'Sopen01g030560' => 'spe', 'Sopen05g006630' => 'spe', 'Sopen06g032720' => 'spe', 'Sopen09g005660' => 'spe', 'Sopen09g030690' => 'spe', 'Sp4g14540' => 'spa', 'Sp4g20030' => 'spa', 'Sp5g01320' => 'spa', 'Sp6g21170' => 'spa', 'Sp6g21180' => 'spa', 'Sp6g21190' => 'spa', 'Sp6g40220' => 'spa', 'TAR362G0122' => 'tar', 'TAR362G1338' => 'tar', 'TAR369G0590' => 'tar', 'TAR371G0824' => 'tar', 'TAR622G1429' => 'tar', 'TAR623G0734' => 'tar', 'TAR625G0441' => 'tar', 'TAR629G0976' => 'tar', 'TAR633G1195' => 'tar', 'TAR636G2660' => 'tar', 'THA.LOC104799440' => 'tha', 'THA.LOC104800966' => 'tha', 'THA.LOC104806559' => 'tha', 'THA.LOC104810765' => 'tha', 'THA.LOC104816266' => 'tha', 'THA.LOC104817419' => 'tha', 'THA.LOC104827021' => 'tha', 'Thecc.01G327400' => 'tca', 'Thecc.04G229200' => 'tca', 'Thecc.05G037400' => 'tca', 'Thecc.09G318600' => 'tca', 'Thecc.09G318700' => 'tca', 'Thhalv10006238m.g' => 'esa', 'Thhalv10014321m.g' => 'esa', 'Thhalv10014335m.g' => 'esa', 'Thhalv10015826m.g' => 'esa', 'Thhalv10017107m.g' => 'esa', 'Thhalv10017180m.g' => 'esa', 'Thhalv10029339m.g' => 'esa', 'TPR.G1699' => 'tpr', 'TPR.G23609' => 'tpr', 'TPR.G3081' => 'tpr', 'TPR.G40397' => 'tpr', 'TPR.G5522' => 'tpr', 'TPR.G5618' => 'tpr', 'TPR.G5626' => 'tpr', 'TWI09G1632' => 'twi', 'TWI23G1230' => 'twi', 'TWI53G1064' => 'twi', 'TWI59G0751' => 'twi', 'TWI74G0947' => 'twi', 'TWI77G0337' => 'twi', 'TWI79G1254' => 'twi', 'unitig_0.g2341' => 'ugi', 'unitig_26.g10006' => 'ugi', 'unitig_26.g10008' => 'ugi', 'unitig_26.g9192' => 'ugi', 'vmacro14547' => 'vma', 'vmacro15333' => 'vma', 'vmacro18743' => 'vma', 'vmacro20166' => 'vma', 'VMungo0331G0523' => 'vmu', 'VMungo0331G1202' => 'vmu', 'VMungo0720G1228' => 'vmu', 'VMungo0720G1514' => 'vmu', 'VMungo1080G0169' => 'vmu', 'VMungo1127G1475' => 'vmu', 'VMungo1383G1208' => 'vmu', 'VMungo1383G1698' => 'vmu', 'Zm00001eb012270' => 'zma', 'Zm00001eb054100' => 'zma', 'Zm00001eb063350' => 'zma', 'Zm00001eb328560' => 'zma', 'Zm00001eb342820' => 'zma', 'Zm00001eb362210' => 'zma', 'Zm00001eb397730' => 'zma', 'Zm00001eb399750' => 'zma' ) $gf_id = 'HOM05D000959' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000959' ) $data_identifier = 'HOM05D000959' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 5, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 5, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 10, 'mbi' => (int) 3, 'mco' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 2, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 3, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 11, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399750' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000959', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '622', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p07100' => 'bna', 'A03p11720' => 'bna', 'A05p08300' => 'bna', 'A05p13380' => 'bna', 'A09p54130' => 'bna', 'A10p16690' => 'bna', 'A10p16700' => 'bna', 'A10p33390' => 'bna', 'Aa31LG10G16020' => 'aar', 'Aa31LG1G11810' => 'aar', 'Aa31LG1G11830' => 'aar', 'Aa31LG1G22510' => 'aar', 'Aa31LG5G4890' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5793' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2310' => 'aag', 'Actinidia08499' => 'ach', 'Actinidia11262' => 'ach', 'Actinidia23926' => 'ach', 'Actinidia34420' => 'ach', 'Actinidia36970' => 'ach', 'Ah.02g111220' => 'amhyb', 'Ah.15g097750' => 'amhyb', 'AL4G27500' => 'aly', 'AL6G11470' => 'aly', 'AL8G35950' => 'aly', 'AL8G35960' => 'aly', 'AL8G35970' => 'aly', 'Aqoxy1G00912' => 'aox', 'Aqoxy2G02253' => 'aox', 'Aqoxy2G02411' => 'aox', 'Aqoxy5G00485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BZ66YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K8ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM4FUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6BF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HFV7XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25JBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0YNNV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MAKK6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P70IT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP2Z6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V61LZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YWP64R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3S9AI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7PGHH' => 'arhy', 'AT2G32150' => 'ath', 'AT3G62040' => 'ath', 'AT5G02230' => 'ath', 'AT5G59480' => 'ath', 'AT5G59490' => 'ath', 'ATR0332G060' => 'atr', 'ATR0559G190' => 'atr', 'ATR0693G294' => 'atr', 'Atru.chr3.3975' => 'acertr', 'Atru.chr3.3976' => 'acertr', 'Atru.chr3.3977' => 'acertr', 'Atru.chr4.2498' => 'acertr', 'Atru.chr5.838' => 'acertr', 'Atru.chr8.1990' => 'acertr', 'Atru.chr8.1991' => 'acertr', 'Atru.chr8.1992' => 'acertr', 'AUR62001759' => 'cqu', 'AUR62009545' => 'cqu', 'AUR62010474' => 'cqu', 'AUR62025820' => 'cqu', 'AUR62030422' => 'cqu', 'AUR62033605' => 'cqu', 'AUR62038615' => 'cqu', 'AUR62041347' => 'cqu', 'BcaB01g04574' => 'bca', 'BcaB02g09263' => 'bca', 'BcaB02g10453' => 'bca', 'BcaB05g22513' => 'bca', 'BcaB08g36253' => 'bca', 'BcaB08g36254' => 'bca', 'BcaC01g06519' => 'bca', 'BcaC02g11889' => 'bca', 'BcaC03g14010' => 'bca', 'BcaC03g18439' => 'bca', 'BcaC04g19765' => 'bca', 'BcaC09g48432' => 'bca', 'BcaNung07302' => 'bca', 'BolC2t06040H' => 'bol', 'BolC2t07346H' => 'bol', 'BolC3t13817H' => 'bol', 'BolC4t22625H' => 'bol', 'BolC4t23297H' => 'bol', 'BolC8t51278H' => 'bol', 'BolC9t58050H' => 'bol', 'BolC9t58051H' => 'bol', 'BolC9t60163H' => 'bol', 'BraA02t04712Z' => 'bra', 'BraA02t05791Z' => 'bra', 'BraA03t10483Z' => 'bra', 'BraA05t19795Z' => 'bra', 'BraA05t20276Z' => 'bra', 'BraA09t40827Z' => 'bra', 'BraA10t43750Z' => 'bra', 'BraA10t43751Z' => 'bra', 'BraA10t45370Z' => 'bra', 'C02p00400' => 'bna', 'C02p12460' => 'bna', 'C03p13680' => 'bna', 'C04p10270' => 'bna', 'C04p17500' => 'bna', 'C08p37010' => 'bna', 'C09p51880' => 'bna', 'C09p51890' => 'bna', 'C09p74300' => 'bna', 'CAN.G179.26' => 'can', 'CAN.G3384.1' => 'can', 'CAN.G394.68' => 'can', 'CAN.G907.13' => 'can', 'CANSAT11G0012' => 'cansat', 'CANSAT25G1586' => 'cansat', 'CANSAT35G0735' => 'cansat', 'CANSAT54G0556' => 'cansat', 'CANSAT64G0356' => 'cansat', 'CANSAT78G2042' => 'cansat', 'CARHR125920' => 'chi', 'CARHR131910' => 'chi', 'CARHR172390' => 'chi', 'CARHR211140' => 'chi', 'CARHR285850' => 'chi', 'CARHR285860' => 'chi', 'Carub.0004s1347' => 'cru', 'Carub.0004s1960' => 'cru', 'Carub.0005s2880' => 'cru', 'Carub.0006s0107' => 'cru', 'Carub.0008s2015' => 'cru', 'Carub.0008s2016' => 'cru', 'Carub.0008s2017' => 'cru', 'Ca_01315_v3' => 'car', 'Ca_05063_v3' => 'car', 'Ca_10231_v3' => 'car', 'Ca_10913_v3' => 'car', 'Ca_19156_v3' => 'car', 'Ca_23644_v3' => 'car', 'Ca_26735_v3' => 'car', 'Cc01_g13130' => 'ccan', 'Cc02_g21690' => 'ccan', 'Cc03_g03600' => 'ccan', 'Cc06_g02510' => 'ccan', 'CDE02G1265' => 'cde', 'CDE05G0415' => 'cde', 'CDE08G1082' => 'cde', 'Cfa005780' => 'cfa', 'Cfa011522' => 'cfa', 'Cfa011523' => 'cfa', 'Cfa015627' => 'cfa', 'Cfa017359' => 'cfa', 'Ciclev10005687m.g' => 'ccl', 'Ciclev10012173m.g' => 'ccl', 'Ciclev10021621m.g' => 'ccl', 'Ciclev10028968m.g' => 'ccl', 'Ciclev10029907m.g' => 'ccl', 'CiPaw.01G164800' => 'cil', 'CiPaw.07G083700' => 'cil', 'CiPaw.07G127000' => 'cil', 'CiPaw.07G136900' => 'cil', 'CiPaw.08G081700' => 'cil', 'CiPaw.09G194600' => 'cil', 'CiPaw.10G146500' => 'cil', 'CiPaw.13G091500' => 'cil', 'CiPaw.13G091600' => 'cil', 'ClCG00G003390' => 'cla', 'ClCG01G007220' => 'cla', 'ClCG03G001370' => 'cla', 'ClCG04G008100' => 'cla', 'ClCG06G006110' => 'cla', 'ClCG06G006130' => 'cla', 'ClCG10G021210' => 'cla', 'COL.COLO4_07648' => 'col', 'COL.COLO4_07650' => 'col', 'COL.COLO4_07651' => 'col', 'COL.COLO4_14780' => 'col', 'COL.COLO4_18546' => 'col', 'COL.COLO4_18547' => 'col', 'COL.COLO4_23103' => 'col', 'COL.COLO4_30419' => 'col', 'COL.COLO4_34232' => 'col', 'Cpa.g.sc169.20' => 'cpa', 'Cpa.g.sc57.45' => 'cpa', 'Cpa.g.sc58.124' => 'cpa', 'Cpa.g.sc58.125' => 'cpa', 'Cpa.g.sc81.118' => 'cpa', 'Cpa.g.sc81.119' => 'cpa', 'Cre12.g524700' => 'cre', 'CsaV3_1G034430' => 'csa', 'CsaV3_1G034440' => 'csa', 'CsaV3_1G034450' => 'csa', 'CsaV3_3G034830' => 'csa', 'CsaV3_4G025090' => 'csa', 'CsaV3_5G018660' => 'csa', 'CsaV3_6G038160' => 'csa', 'CSS0003447' => 'camsi', 'CSS0017840' => 'camsi', 'CSS0019260' => 'camsi', 'CSS0040375' => 'camsi', 'CSS0042533' => 'camsi', 'DCAR_005960' => 'dca', 'DCAR_012104' => 'dca', 'DCAR_012105' => 'dca', 'DCAR_012293' => 'dca', 'DCAR_015632' => 'dca', 'DCAR_024602' => 'dca', 'DCAR_028752' => 'dca', 'Dinv06261' => 'din', 'Dinv13982' => 'din', 'Dinv17029' => 'din', 'Dinv18463' => 'din', 'Dinv33181' => 'din', 'Dinv35585' => 'din', 'Dinv37161' => 'din', 'Dinv42977' => 'din', 'Dinv43122' => 'din', 'Dinv44517' => 'din', 'Duzib093G0256' => 'dzi', 'Duzib106G1254' => 'dzi', 'Duzib128G1789' => 'dzi', 'Duzib133G0633' => 'dzi', 'Duzib138G0510' => 'dzi', 'Duzib150G1084' => 'dzi', 'Duzib168G0488' => 'dzi', 'Duzib168G1523' => 'dzi', 'Duzib170G0133' => 'dzi', 'ECA234G1433' => 'eca', 'ECA236G1432' => 'eca', 'ECA236G2256' => 'eca', 'ECA236G2365' => 'eca', 'ECA236G4830' => 'eca', 'ECA248G1505' => 'eca', 'EL10Ac3g06431' => 'bvu', 'EL10Ac5g12577' => 'bvu', 'EL10Ac6g13533' => 'bvu', 'EL10Ac7g16045' => 'bvu', 'Eucgr.A01281' => 'egr', 'Eucgr.B02326' => 'egr', 'Eucgr.H03532' => 'egr', 'Eucgr.K00553' => 'egr', 'Eucgr.K03116' => 'egr', 'FAN02G3963' => 'fan', 'FAN05G0438' => 'fan', 'FAN09G2434' => 'fan', 'FAN12G3984' => 'fan', 'FAN14G0798' => 'fan', 'FAN17G0652' => 'fan', 'FAN19G1988' => 'fan', 'FAN22G0632' => 'fan', 'FAN23G0387' => 'fan', 'FAN26G1323' => 'fan', 'FAN28G0666' => 'fan', 'FvH4_1g26080' => 'fve', 'FvH4_3g36780' => 'fve', 'FvH4_4g15270' => 'fve', 'FvH4_6g13490' => 'fve', 'Glyma.01G098700' => 'gma', 'Glyma.03G065900' => 'gma', 'Glyma.03G073754' => 'gma', 'Glyma.03G073758' => 'gma', 'Glyma.03G083200' => 'gma', 'Glyma.03G225500' => 'gma', 'Glyma.05G037766' => 'gma', 'Glyma.07G133500' => 'gma', 'Glyma.10G139400' => 'gma', 'Glyma.10G248900' => 'gma', 'Glyma.11G137800' => 'gma', 'Glyma.12G061300' => 'gma', 'Glyma.13G337900' => 'gma', 'Glyma.15G036600' => 'gma', 'Glyma.18G182800' => 'gma', 'Glyma.19G222500' => 'gma', 'Glyma.20G144800' => 'gma', 'Gohir.A01G222000' => 'ghi', 'Gohir.A03G044000' => 'ghi', 'Gohir.A03G044100' => 'ghi', 'Gohir.A04G083100' => 'ghi', 'Gohir.A07G127200' => 'ghi', 'Gohir.A07G132400' => 'ghi', 'Gohir.A08G000700' => 'ghi', 'Gohir.A11G327300' => 'ghi', 'Gohir.D01G211500' => 'ghi', 'Gohir.D03G123400' => 'ghi', 'Gohir.D03G123500' => 'ghi', 'Gohir.D04G121800' => 'ghi', 'Gohir.D07G131500' => 'ghi', 'Gohir.D07G136600' => 'ghi', 'Gohir.D08G011600' => 'ghi', 'Gohir.D11G346200' => 'ghi', 'Gorai.001G142800' => 'gra', 'Gorai.001G148700' => 'gra', 'Gorai.002G257300' => 'gra', 'Gorai.003G130000' => 'gra', 'Gorai.003G130100' => 'gra', 'Gorai.004G005300' => 'gra', 'Gorai.007G376500' => 'gra', 'Gorai.012G104700' => 'gra', 'GSVIVG01017946001' => 'vvi', 'GSVIVG01024928001' => 'vvi', 'GSVIVG01028227001' => 'vvi', 'GSVIVG01034151001' => 'vvi', 'HanXRQChr05g0135031' => 'han', 'HanXRQChr05g0135041' => 'han', 'HanXRQChr05g0140021' => 'han', 'HanXRQChr06g0178981' => 'han', 'HanXRQChr07g0188251' => 'han', 'HanXRQChr08g0235311' => 'han', 'HanXRQChr09g0271011' => 'han', 'HanXRQChr10g0293321' => 'han', 'HanXRQChr13g0388171' => 'han', 'Haze_00916' => 'cav', 'Haze_05063' => 'cav', 'Haze_20814' => 'cav', 'Haze_24128' => 'cav', 'Hma1.2p1_0745F.1_g212010' => 'hma', 'Hma1.2p1_0757F.1_g213260' => 'hma', 'Hma1.2p1_0936F.1_g238840' => 'hma', 'Hma1.2p1_1735F.1_g299890' => 'hma', 'Hma1.2p1_1861F.1_g305685' => 'hma', 'HPP92_003397' => 'vpl', 'HPP92_012597' => 'vpl', 'HPP92_015520' => 'vpl', 'HPP92_015539' => 'vpl', 'HPP92_020373' => 'vpl', 'Hund04938' => 'sun', 'Hund10677' => 'sun', 'Hund11033' => 'sun', 'Hund12155' => 'sun', 'Lalb_Chr01g0022551' => 'lal', 'Lalb_Chr03g0042341' => 'lal', 'Lalb_Chr07g0192931' => 'lal', 'Lalb_Chr12g0209551' => 'lal', 'Lalb_Chr19g0125251' => 'lal', 'Lalb_Chr19g0137891' => 'lal', 'Lalb_Chr21g0304641' => 'lal', 'Lalb_Chr21g0309881' => 'lal', 'Lj1A5T12' => 'lonja', 'Lj1C148G10' => 'lonja', 'Lj2A93T83' => 'lonja', 'Lj3A738G68' => 'lonja', 'Lj3C966T1' => 'lonja', 'Lj3g0018958' => 'lja', 'Lj3g0021831' => 'lja', 'Lj3g0025443' => 'lja', 'Lj4g0026809' => 'lja', 'Lj5g0012558' => 'lja', 'Lj5g0021586' => 'lja', 'Lsat_1_v5_gn_5_156840' => 'lsa', 'Lsat_1_v5_gn_8_73460' => 'lsa', 'Lsat_1_v5_gn_8_73481' => 'lsa', 'Lsat_1_v5_gn_9_31601' => 'lsa', 'Lsat_1_v5_gn_9_77320' => 'lsa', 'Manes.01G171300' => 'mes', 'Manes.01G171400' => 'mes', 'Manes.01G236100' => 'mes', 'Manes.02G130500' => 'mes', 'Manes.02G130600' => 'mes', 'Manes.03G180200' => 'mes', 'Manes.05G007000' => 'mes', 'Manes.08G084400' => 'mes', 'Manes.09G092600' => 'mes', 'Manes.15G027900' => 'mes', 'MBI04_g40948_MAGBIO' => 'mbi', 'MBI14_g12123_MAGBIO' => 'mbi', 'MBI18_g28915_MAGBIO' => 'mbi', 'MCO09G053' => 'mco', 'MCO11G782' => 'mco', 'MCO15G215' => 'mco', 'MD03G1088500' => 'mdo', 'MD03G1088600' => 'mdo', 'MD04G1130800' => 'mdo', 'MD09G1291700' => 'mdo', 'MD11G1097500' => 'mdo', 'MD11G1097600' => 'mdo', 'MD12G1143900' => 'mdo', 'MD13G1191400' => 'mdo', 'MD16G1191500' => 'mdo', 'Medtr1g085570' => 'mtr', 'Medtr1g104610' => 'mtr', 'Medtr2g097520' => 'mtr', 'Medtr4g021800' => 'mtr', 'Medtr4g021825' => 'mtr', 'Medtr4g064270' => 'mtr', 'Medtr4g064380' => 'mtr', 'Medtr7g062150' => 'mtr', 'MELO3C003138.2' => 'cme', 'MELO3C005187.2' => 'cme', 'MELO3C009252.2' => 'cme', 'MELO3C014481.2' => 'cme', 'MELO3C020616.2' => 'cme', 'MELO3C020617.2' => 'cme', 'MELO3C020618.2' => 'cme', 'Migut.G00328' => 'egut', 'Migut.J00320' => 'egut', 'Migut.L01000' => 'egut', 'Migut.L01953' => 'egut', 'MSTRG.10253' => 'ama', 'MSTRG.19077' => 'ama', 'MSTRG.26780' => 'ama', 'MSTRG.4023' => 'ama', 'MSTRG.5655' => 'ama', 'MSTRG.9992' => 'ama', 'Nitab4.5_0000043g0310' => 'nta', 'Nitab4.5_0000463g0080' => 'nta', 'Nitab4.5_0000705g0170' => 'nta', 'Nitab4.5_0001326g0060' => 'nta', 'Nitab4.5_0001628g0030' => 'nta', 'Nitab4.5_0002103g0110' => 'nta', 'Nitab4.5_0002946g0030' => 'nta', 'Nitab4.5_0004639g0030' => 'nta', 'Nn2g11149' => 'nnu', 'Nn2g13389' => 'nnu', 'Nn4g25326' => 'nnu', 'Nn4g26290' => 'nnu', 'Nn5g29865' => 'nnu', 'Oeu004163.1' => 'oeu', 'Oeu006901.1' => 'oeu', 'Oeu010096.1' => 'oeu', 'Oeu024340.1' => 'oeu', 'Oeu048369.1' => 'oeu', 'Os01g0973000' => 'osa', 'Os03g0273800' => 'osa', 'Os03g0701200' => 'osa', 'Os03g0834050' => 'osa', 'Os07g0634400' => 'osa', 'Peaxi162Scf00092g01414' => 'pax', 'Peaxi162Scf00165g00818' => 'pax', 'Peaxi162Scf00309g00516' => 'pax', 'Peaxi162Scf00774g00218' => 'pax', 'PGR004G1824' => 'pgr', 'PGR004G2606' => 'pgr', 'PGR031G2716' => 'pgr', 'PGR102G2460' => 'pgr', 'PGR142G2599' => 'pgr', 'PGSC0003DMG400000843' => 'stu', 'PGSC0003DMG400008829' => 'stu', 'PGSC0003DMG400030418' => 'stu', 'PGSC0003DMG400031834' => 'stu', 'PGSC0003DMG401028300' => 'stu', 'PGSC0003DMG402028300' => 'stu', 'Phvul.001G219300' => 'pvu', 'Phvul.007G056000' => 'pvu', 'Phvul.007G208000' => 'pvu', 'Phvul.008G119500' => 'pvu', 'Phvul.010G011200' => 'pvu', 'Phvul.010G014800' => 'pvu', 'Phvul.011G062900' => 'pvu', 'Phvul.L007043' => 'pvu', 'Potri.001G242300' => 'ptr', 'Potri.002G185300' => 'ptr', 'Potri.006G086900' => 'ptr', 'Potri.008G151700' => 'ptr', 'Potri.009G033500' => 'ptr', 'Potri.010G089300' => 'ptr', 'Potri.014G110800' => 'ptr', 'Pp3c27_8130' => 'ppa', 'Pp3c6_27410' => 'ppa', 'PRCOL_00001659' => 'pco', 'PRCOL_00001927' => 'pco', 'PRCOL_00003649' => 'pco', 'Prupe.1G011600' => 'ppe', 'Prupe.3G000800' => 'ppe', 'Prupe.3G001100' => 'ppe', 'Prupe.6G072700' => 'ppe', 'Prupe.6G072800' => 'ppe', 'Prupe.6G257300' => 'ppe', 'Prupe.8G033000' => 'ppe', 'Psat0s2633g0080' => 'psa', 'Psat0s3396g0080' => 'psa', 'Psat0s3396g0200' => 'psa', 'Psat3g139080' => 'psa', 'Psat5g285080' => 'psa', 'Psat6g157760' => 'psa', 'Psat6g208440' => 'psa', 'Psat7g215320' => 'psa', 'Psat7g215400' => 'psa', 'Psat7g235600' => 'psa', 'Psat7g235760' => 'psa', 'PSO063G4603' => 'pso', 'PSO210G0182' => 'pso', 'PSO210G0196' => 'pso', 'PSO339G0394' => 'pso', 'PSO339G4127' => 'pso', 'PSO513G0064' => 'pso', 'PSO761G0079' => 'pso', 'QL01p031003' => 'qlo', 'QL01p031078' => 'qlo', 'QL06p003004' => 'qlo', 'QL07p048731' => 'qlo', 'QL09p037427' => 'qlo', 'RcHm_v2.0_Chr3g0466361' => 'rch', 'RcHm_v2.0_Chr3g0485571' => 'rch', 'RcHm_v2.0_Chr4g0416551' => 'rch', 'RcHm_v2.0_Chr5g0065831' => 'rch', 'Rhsim01G0230500' => 'rsi', 'Rhsim05G0194000' => 'rsi', 'Rhsim08G0250400' => 'rsi', 'Sabra02G0131000' => 'sbr', 'Sabra06G0066300' => 'sbr', 'Sabra08G0115500' => 'sbr', 'Sabra09G0023900' => 'sbr', 'Sabra10G0054000' => 'sbr', 'Sabra14G0081500' => 'sbr', 'Sabra16G0147100' => 'sbr', 'SalBow2G2957' => 'sbo', 'SalBow4G3320' => 'sbo', 'SalBow8G1894' => 'sbo', 'Sc07g0007950' => 'sci', 'Sc12g0001360' => 'sci', 'Sc13g0004330' => 'sci', 'Sc20g0005010' => 'sci', 'Sed0000361' => 'sed', 'Sed0001706' => 'sed', 'Sed0002422' => 'sed', 'Sed0004029' => 'sed', 'Sed0004602' => 'sed', 'Sed0004943' => 'sed', 'Sed0008646' => 'sed', 'Sed0023313' => 'sed', 'Sed0024843' => 'sed', 'SEGI_00081' => 'sgi', 'SEGI_00947' => 'sgi', 'SEGI_04046' => 'sgi', 'SEGI_06880' => 'sgi', 'SEGI_09736' => 'sgi', 'SEGI_12741' => 'sgi', 'SEGI_14530' => 'sgi', 'SEGI_20705' => 'sgi', 'SEGI_26088' => 'sgi', 'SEGI_28323' => 'sgi', 'SEGI_33343' => 'sgi', 'SGA_v2.0_scaffold126G33775' => 'sas', 'SGA_v2.0_scaffold2G01337' => 'sas', 'SGA_v2.0_scaffold38G15006' => 'sas', 'SGA_v2.0_scaffold39G15264' => 'sas', 'SGA_v2.0_scaffold453G51880' => 'sas', 'SHI12696' => 'shi', 'SMO367G1096' => 'smo', 'Solyc01g068630.3' => 'sly', 'Solyc05g011880.3' => 'sly', 'Solyc06g076300.3' => 'sly', 'Solyc09g010940.4' => 'sly', 'Solyc09g075890.3' => 'sly', 'Sopen01g030560' => 'spe', 'Sopen05g006630' => 'spe', 'Sopen06g032720' => 'spe', 'Sopen09g005660' => 'spe', 'Sopen09g030690' => 'spe', 'Sp4g14540' => 'spa', 'Sp4g20030' => 'spa', 'Sp5g01320' => 'spa', 'Sp6g21170' => 'spa', 'Sp6g21180' => 'spa', 'Sp6g21190' => 'spa', 'Sp6g40220' => 'spa', 'TAR362G0122' => 'tar', 'TAR362G1338' => 'tar', 'TAR369G0590' => 'tar', 'TAR371G0824' => 'tar', 'TAR622G1429' => 'tar', 'TAR623G0734' => 'tar', 'TAR625G0441' => 'tar', 'TAR629G0976' => 'tar', 'TAR633G1195' => 'tar', 'TAR636G2660' => 'tar', 'THA.LOC104799440' => 'tha', 'THA.LOC104800966' => 'tha', 'THA.LOC104806559' => 'tha', 'THA.LOC104810765' => 'tha', 'THA.LOC104816266' => 'tha', 'THA.LOC104817419' => 'tha', 'THA.LOC104827021' => 'tha', 'Thecc.01G327400' => 'tca', 'Thecc.04G229200' => 'tca', 'Thecc.05G037400' => 'tca', 'Thecc.09G318600' => 'tca', 'Thecc.09G318700' => 'tca', 'Thhalv10006238m.g' => 'esa', 'Thhalv10014321m.g' => 'esa', 'Thhalv10014335m.g' => 'esa', 'Thhalv10015826m.g' => 'esa', 'Thhalv10017107m.g' => 'esa', 'Thhalv10017180m.g' => 'esa', 'Thhalv10029339m.g' => 'esa', 'TPR.G1699' => 'tpr', 'TPR.G23609' => 'tpr', 'TPR.G3081' => 'tpr', 'TPR.G40397' => 'tpr', 'TPR.G5522' => 'tpr', 'TPR.G5618' => 'tpr', 'TPR.G5626' => 'tpr', 'TWI09G1632' => 'twi', 'TWI23G1230' => 'twi', 'TWI53G1064' => 'twi', 'TWI59G0751' => 'twi', 'TWI74G0947' => 'twi', 'TWI77G0337' => 'twi', 'TWI79G1254' => 'twi', 'unitig_0.g2341' => 'ugi', 'unitig_26.g10006' => 'ugi', 'unitig_26.g10008' => 'ugi', 'unitig_26.g9192' => 'ugi', 'vmacro14547' => 'vma', 'vmacro15333' => 'vma', 'vmacro18743' => 'vma', 'vmacro20166' => 'vma', 'VMungo0331G0523' => 'vmu', 'VMungo0331G1202' => 'vmu', 'VMungo0720G1228' => 'vmu', 'VMungo0720G1514' => 'vmu', 'VMungo1080G0169' => 'vmu', 'VMungo1127G1475' => 'vmu', 'VMungo1383G1208' => 'vmu', 'VMungo1383G1698' => 'vmu', 'Zm00001eb012270' => 'zma', 'Zm00001eb054100' => 'zma', 'Zm00001eb063350' => 'zma', 'Zm00001eb328560' => 'zma', 'Zm00001eb342820' => 'zma', 'Zm00001eb362210' => 'zma', 'Zm00001eb397730' => 'zma', 'Zm00001eb399750' => 'zma' ), 'gf_id' => 'HOM05D000959', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000959' ), 'data_identifier' => 'HOM05D000959', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000959', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '622', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p07100' => 'bna', 'A03p11720' => 'bna', 'A05p08300' => 'bna', 'A05p13380' => 'bna', 'A09p54130' => 'bna', 'A10p16690' => 'bna', 'A10p16700' => 'bna', 'A10p33390' => 'bna', 'Aa31LG10G16020' => 'aar', 'Aa31LG1G11810' => 'aar', 'Aa31LG1G11830' => 'aar', 'Aa31LG1G22510' => 'aar', 'Aa31LG5G4890' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5793' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2310' => 'aag', 'Actinidia08499' => 'ach', 'Actinidia11262' => 'ach', 'Actinidia23926' => 'ach', 'Actinidia34420' => 'ach', 'Actinidia36970' => 'ach', 'Ah.02g111220' => 'amhyb', 'Ah.15g097750' => 'amhyb', 'AL4G27500' => 'aly', 'AL6G11470' => 'aly', 'AL8G35950' => 'aly', 'AL8G35960' => 'aly', 'AL8G35970' => 'aly', 'Aqoxy1G00912' => 'aox', 'Aqoxy2G02253' => 'aox', 'Aqoxy2G02411' => 'aox', 'Aqoxy5G00485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BZ66YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K8ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM4FUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6BF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HFV7XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25JBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0YNNV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MAKK6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P70IT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP2Z6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V61LZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YWP64R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3S9AI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7PGHH' => 'arhy', 'AT2G32150' => 'ath', 'AT3G62040' => 'ath', 'AT5G02230' => 'ath', 'AT5G59480' => 'ath', 'AT5G59490' => 'ath', 'ATR0332G060' => 'atr', 'ATR0559G190' => 'atr', 'ATR0693G294' => 'atr', 'Atru.chr3.3975' => 'acertr', 'Atru.chr3.3976' => 'acertr', 'Atru.chr3.3977' => 'acertr', 'Atru.chr4.2498' => 'acertr', 'Atru.chr5.838' => 'acertr', 'Atru.chr8.1990' => 'acertr', 'Atru.chr8.1991' => 'acertr', 'Atru.chr8.1992' => 'acertr', 'AUR62001759' => 'cqu', 'AUR62009545' => 'cqu', 'AUR62010474' => 'cqu', 'AUR62025820' => 'cqu', 'AUR62030422' => 'cqu', 'AUR62033605' => 'cqu', 'AUR62038615' => 'cqu', 'AUR62041347' => 'cqu', 'BcaB01g04574' => 'bca', 'BcaB02g09263' => 'bca', 'BcaB02g10453' => 'bca', 'BcaB05g22513' => 'bca', 'BcaB08g36253' => 'bca', 'BcaB08g36254' => 'bca', 'BcaC01g06519' => 'bca', 'BcaC02g11889' => 'bca', 'BcaC03g14010' => 'bca', 'BcaC03g18439' => 'bca', 'BcaC04g19765' => 'bca', 'BcaC09g48432' => 'bca', 'BcaNung07302' => 'bca', 'BolC2t06040H' => 'bol', 'BolC2t07346H' => 'bol', 'BolC3t13817H' => 'bol', 'BolC4t22625H' => 'bol', 'BolC4t23297H' => 'bol', 'BolC8t51278H' => 'bol', 'BolC9t58050H' => 'bol', 'BolC9t58051H' => 'bol', 'BolC9t60163H' => 'bol', 'BraA02t04712Z' => 'bra', 'BraA02t05791Z' => 'bra', 'BraA03t10483Z' => 'bra', 'BraA05t19795Z' => 'bra', 'BraA05t20276Z' => 'bra', 'BraA09t40827Z' => 'bra', 'BraA10t43750Z' => 'bra', 'BraA10t43751Z' => 'bra', 'BraA10t45370Z' => 'bra', 'C02p00400' => 'bna', 'C02p12460' => 'bna', 'C03p13680' => 'bna', 'C04p10270' => 'bna', 'C04p17500' => 'bna', 'C08p37010' => 'bna', 'C09p51880' => 'bna', 'C09p51890' => 'bna', 'C09p74300' => 'bna', 'CAN.G179.26' => 'can', 'CAN.G3384.1' => 'can', 'CAN.G394.68' => 'can', 'CAN.G907.13' => 'can', 'CANSAT11G0012' => 'cansat', 'CANSAT25G1586' => 'cansat', 'CANSAT35G0735' => 'cansat', 'CANSAT54G0556' => 'cansat', 'CANSAT64G0356' => 'cansat', 'CANSAT78G2042' => 'cansat', 'CARHR125920' => 'chi', 'CARHR131910' => 'chi', 'CARHR172390' => 'chi', 'CARHR211140' => 'chi', 'CARHR285850' => 'chi', 'CARHR285860' => 'chi', 'Carub.0004s1347' => 'cru', 'Carub.0004s1960' => 'cru', 'Carub.0005s2880' => 'cru', 'Carub.0006s0107' => 'cru', 'Carub.0008s2015' => 'cru', 'Carub.0008s2016' => 'cru', 'Carub.0008s2017' => 'cru', 'Ca_01315_v3' => 'car', 'Ca_05063_v3' => 'car', 'Ca_10231_v3' => 'car', 'Ca_10913_v3' => 'car', 'Ca_19156_v3' => 'car', 'Ca_23644_v3' => 'car', 'Ca_26735_v3' => 'car', 'Cc01_g13130' => 'ccan', 'Cc02_g21690' => 'ccan', 'Cc03_g03600' => 'ccan', 'Cc06_g02510' => 'ccan', 'CDE02G1265' => 'cde', 'CDE05G0415' => 'cde', 'CDE08G1082' => 'cde', 'Cfa005780' => 'cfa', 'Cfa011522' => 'cfa', 'Cfa011523' => 'cfa', 'Cfa015627' => 'cfa', 'Cfa017359' => 'cfa', 'Ciclev10005687m.g' => 'ccl', 'Ciclev10012173m.g' => 'ccl', 'Ciclev10021621m.g' => 'ccl', 'Ciclev10028968m.g' => 'ccl', 'Ciclev10029907m.g' => 'ccl', 'CiPaw.01G164800' => 'cil', 'CiPaw.07G083700' => 'cil', 'CiPaw.07G127000' => 'cil', 'CiPaw.07G136900' => 'cil', 'CiPaw.08G081700' => 'cil', 'CiPaw.09G194600' => 'cil', 'CiPaw.10G146500' => 'cil', 'CiPaw.13G091500' => 'cil', 'CiPaw.13G091600' => 'cil', 'ClCG00G003390' => 'cla', 'ClCG01G007220' => 'cla', 'ClCG03G001370' => 'cla', 'ClCG04G008100' => 'cla', 'ClCG06G006110' => 'cla', 'ClCG06G006130' => 'cla', 'ClCG10G021210' => 'cla', 'COL.COLO4_07648' => 'col', 'COL.COLO4_07650' => 'col', 'COL.COLO4_07651' => 'col', 'COL.COLO4_14780' => 'col', 'COL.COLO4_18546' => 'col', 'COL.COLO4_18547' => 'col', 'COL.COLO4_23103' => 'col', 'COL.COLO4_30419' => 'col', 'COL.COLO4_34232' => 'col', 'Cpa.g.sc169.20' => 'cpa', 'Cpa.g.sc57.45' => 'cpa', 'Cpa.g.sc58.124' => 'cpa', 'Cpa.g.sc58.125' => 'cpa', 'Cpa.g.sc81.118' => 'cpa', 'Cpa.g.sc81.119' => 'cpa', 'Cre12.g524700' => 'cre', 'CsaV3_1G034430' => 'csa', 'CsaV3_1G034440' => 'csa', 'CsaV3_1G034450' => 'csa', 'CsaV3_3G034830' => 'csa', 'CsaV3_4G025090' => 'csa', 'CsaV3_5G018660' => 'csa', 'CsaV3_6G038160' => 'csa', 'CSS0003447' => 'camsi', 'CSS0017840' => 'camsi', 'CSS0019260' => 'camsi', 'CSS0040375' => 'camsi', 'CSS0042533' => 'camsi', 'DCAR_005960' => 'dca', 'DCAR_012104' => 'dca', 'DCAR_012105' => 'dca', 'DCAR_012293' => 'dca', 'DCAR_015632' => 'dca', 'DCAR_024602' => 'dca', 'DCAR_028752' => 'dca', 'Dinv06261' => 'din', 'Dinv13982' => 'din', 'Dinv17029' => 'din', 'Dinv18463' => 'din', 'Dinv33181' => 'din', 'Dinv35585' => 'din', 'Dinv37161' => 'din', 'Dinv42977' => 'din', 'Dinv43122' => 'din', 'Dinv44517' => 'din', 'Duzib093G0256' => 'dzi', 'Duzib106G1254' => 'dzi', 'Duzib128G1789' => 'dzi', 'Duzib133G0633' => 'dzi', 'Duzib138G0510' => 'dzi', 'Duzib150G1084' => 'dzi', 'Duzib168G0488' => 'dzi', 'Duzib168G1523' => 'dzi', 'Duzib170G0133' => 'dzi', 'ECA234G1433' => 'eca', 'ECA236G1432' => 'eca', 'ECA236G2256' => 'eca', 'ECA236G2365' => 'eca', 'ECA236G4830' => 'eca', 'ECA248G1505' => 'eca', 'EL10Ac3g06431' => 'bvu', 'EL10Ac5g12577' => 'bvu', 'EL10Ac6g13533' => 'bvu', 'EL10Ac7g16045' => 'bvu', 'Eucgr.A01281' => 'egr', 'Eucgr.B02326' => 'egr', 'Eucgr.H03532' => 'egr', 'Eucgr.K00553' => 'egr', 'Eucgr.K03116' => 'egr', 'FAN02G3963' => 'fan', 'FAN05G0438' => 'fan', 'FAN09G2434' => 'fan', 'FAN12G3984' => 'fan', 'FAN14G0798' => 'fan', 'FAN17G0652' => 'fan', 'FAN19G1988' => 'fan', 'FAN22G0632' => 'fan', 'FAN23G0387' => 'fan', 'FAN26G1323' => 'fan', 'FAN28G0666' => 'fan', 'FvH4_1g26080' => 'fve', 'FvH4_3g36780' => 'fve', 'FvH4_4g15270' => 'fve', 'FvH4_6g13490' => 'fve', 'Glyma.01G098700' => 'gma', 'Glyma.03G065900' => 'gma', 'Glyma.03G073754' => 'gma', 'Glyma.03G073758' => 'gma', 'Glyma.03G083200' => 'gma', 'Glyma.03G225500' => 'gma', 'Glyma.05G037766' => 'gma', 'Glyma.07G133500' => 'gma', 'Glyma.10G139400' => 'gma', 'Glyma.10G248900' => 'gma', 'Glyma.11G137800' => 'gma', 'Glyma.12G061300' => 'gma', 'Glyma.13G337900' => 'gma', 'Glyma.15G036600' => 'gma', 'Glyma.18G182800' => 'gma', 'Glyma.19G222500' => 'gma', 'Glyma.20G144800' => 'gma', 'Gohir.A01G222000' => 'ghi', 'Gohir.A03G044000' => 'ghi', 'Gohir.A03G044100' => 'ghi', 'Gohir.A04G083100' => 'ghi', 'Gohir.A07G127200' => 'ghi', 'Gohir.A07G132400' => 'ghi', 'Gohir.A08G000700' => 'ghi', 'Gohir.A11G327300' => 'ghi', 'Gohir.D01G211500' => 'ghi', 'Gohir.D03G123400' => 'ghi', 'Gohir.D03G123500' => 'ghi', 'Gohir.D04G121800' => 'ghi', 'Gohir.D07G131500' => 'ghi', 'Gohir.D07G136600' => 'ghi', 'Gohir.D08G011600' => 'ghi', 'Gohir.D11G346200' => 'ghi', 'Gorai.001G142800' => 'gra', 'Gorai.001G148700' => 'gra', 'Gorai.002G257300' => 'gra', 'Gorai.003G130000' => 'gra', 'Gorai.003G130100' => 'gra', 'Gorai.004G005300' => 'gra', 'Gorai.007G376500' => 'gra', 'Gorai.012G104700' => 'gra', 'GSVIVG01017946001' => 'vvi', 'GSVIVG01024928001' => 'vvi', 'GSVIVG01028227001' => 'vvi', 'GSVIVG01034151001' => 'vvi', 'HanXRQChr05g0135031' => 'han', 'HanXRQChr05g0135041' => 'han', 'HanXRQChr05g0140021' => 'han', 'HanXRQChr06g0178981' => 'han', 'HanXRQChr07g0188251' => 'han', 'HanXRQChr08g0235311' => 'han', 'HanXRQChr09g0271011' => 'han', 'HanXRQChr10g0293321' => 'han', 'HanXRQChr13g0388171' => 'han', 'Haze_00916' => 'cav', 'Haze_05063' => 'cav', 'Haze_20814' => 'cav', 'Haze_24128' => 'cav', 'Hma1.2p1_0745F.1_g212010' => 'hma', 'Hma1.2p1_0757F.1_g213260' => 'hma', 'Hma1.2p1_0936F.1_g238840' => 'hma', 'Hma1.2p1_1735F.1_g299890' => 'hma', 'Hma1.2p1_1861F.1_g305685' => 'hma', 'HPP92_003397' => 'vpl', 'HPP92_012597' => 'vpl', 'HPP92_015520' => 'vpl', 'HPP92_015539' => 'vpl', 'HPP92_020373' => 'vpl', 'Hund04938' => 'sun', 'Hund10677' => 'sun', 'Hund11033' => 'sun', 'Hund12155' => 'sun', 'Lalb_Chr01g0022551' => 'lal', 'Lalb_Chr03g0042341' => 'lal', 'Lalb_Chr07g0192931' => 'lal', 'Lalb_Chr12g0209551' => 'lal', 'Lalb_Chr19g0125251' => 'lal', 'Lalb_Chr19g0137891' => 'lal', 'Lalb_Chr21g0304641' => 'lal', 'Lalb_Chr21g0309881' => 'lal', 'Lj1A5T12' => 'lonja', 'Lj1C148G10' => 'lonja', 'Lj2A93T83' => 'lonja', 'Lj3A738G68' => 'lonja', 'Lj3C966T1' => 'lonja', 'Lj3g0018958' => 'lja', 'Lj3g0021831' => 'lja', 'Lj3g0025443' => 'lja', 'Lj4g0026809' => 'lja', 'Lj5g0012558' => 'lja', 'Lj5g0021586' => 'lja', 'Lsat_1_v5_gn_5_156840' => 'lsa', 'Lsat_1_v5_gn_8_73460' => 'lsa', 'Lsat_1_v5_gn_8_73481' => 'lsa', 'Lsat_1_v5_gn_9_31601' => 'lsa', 'Lsat_1_v5_gn_9_77320' => 'lsa', 'Manes.01G171300' => 'mes', 'Manes.01G171400' => 'mes', 'Manes.01G236100' => 'mes', 'Manes.02G130500' => 'mes', 'Manes.02G130600' => 'mes', 'Manes.03G180200' => 'mes', 'Manes.05G007000' => 'mes', 'Manes.08G084400' => 'mes', 'Manes.09G092600' => 'mes', 'Manes.15G027900' => 'mes', 'MBI04_g40948_MAGBIO' => 'mbi', 'MBI14_g12123_MAGBIO' => 'mbi', 'MBI18_g28915_MAGBIO' => 'mbi', 'MCO09G053' => 'mco', 'MCO11G782' => 'mco', 'MCO15G215' => 'mco', 'MD03G1088500' => 'mdo', 'MD03G1088600' => 'mdo', 'MD04G1130800' => 'mdo', 'MD09G1291700' => 'mdo', 'MD11G1097500' => 'mdo', 'MD11G1097600' => 'mdo', 'MD12G1143900' => 'mdo', 'MD13G1191400' => 'mdo', 'MD16G1191500' => 'mdo', 'Medtr1g085570' => 'mtr', 'Medtr1g104610' => 'mtr', 'Medtr2g097520' => 'mtr', 'Medtr4g021800' => 'mtr', 'Medtr4g021825' => 'mtr', 'Medtr4g064270' => 'mtr', 'Medtr4g064380' => 'mtr', 'Medtr7g062150' => 'mtr', 'MELO3C003138.2' => 'cme', 'MELO3C005187.2' => 'cme', 'MELO3C009252.2' => 'cme', 'MELO3C014481.2' => 'cme', 'MELO3C020616.2' => 'cme', 'MELO3C020617.2' => 'cme', 'MELO3C020618.2' => 'cme', 'Migut.G00328' => 'egut', 'Migut.J00320' => 'egut', 'Migut.L01000' => 'egut', 'Migut.L01953' => 'egut', 'MSTRG.10253' => 'ama', 'MSTRG.19077' => 'ama', 'MSTRG.26780' => 'ama', 'MSTRG.4023' => 'ama', 'MSTRG.5655' => 'ama', 'MSTRG.9992' => 'ama', 'Nitab4.5_0000043g0310' => 'nta', 'Nitab4.5_0000463g0080' => 'nta', 'Nitab4.5_0000705g0170' => 'nta', 'Nitab4.5_0001326g0060' => 'nta', 'Nitab4.5_0001628g0030' => 'nta', 'Nitab4.5_0002103g0110' => 'nta', 'Nitab4.5_0002946g0030' => 'nta', 'Nitab4.5_0004639g0030' => 'nta', 'Nn2g11149' => 'nnu', 'Nn2g13389' => 'nnu', 'Nn4g25326' => 'nnu', 'Nn4g26290' => 'nnu', 'Nn5g29865' => 'nnu', 'Oeu004163.1' => 'oeu', 'Oeu006901.1' => 'oeu', 'Oeu010096.1' => 'oeu', 'Oeu024340.1' => 'oeu', 'Oeu048369.1' => 'oeu', 'Os01g0973000' => 'osa', 'Os03g0273800' => 'osa', 'Os03g0701200' => 'osa', 'Os03g0834050' => 'osa', 'Os07g0634400' => 'osa', 'Peaxi162Scf00092g01414' => 'pax', 'Peaxi162Scf00165g00818' => 'pax', 'Peaxi162Scf00309g00516' => 'pax', 'Peaxi162Scf00774g00218' => 'pax', 'PGR004G1824' => 'pgr', 'PGR004G2606' => 'pgr', 'PGR031G2716' => 'pgr', 'PGR102G2460' => 'pgr', 'PGR142G2599' => 'pgr', 'PGSC0003DMG400000843' => 'stu', 'PGSC0003DMG400008829' => 'stu', 'PGSC0003DMG400030418' => 'stu', 'PGSC0003DMG400031834' => 'stu', 'PGSC0003DMG401028300' => 'stu', 'PGSC0003DMG402028300' => 'stu', 'Phvul.001G219300' => 'pvu', 'Phvul.007G056000' => 'pvu', 'Phvul.007G208000' => 'pvu', 'Phvul.008G119500' => 'pvu', 'Phvul.010G011200' => 'pvu', 'Phvul.010G014800' => 'pvu', 'Phvul.011G062900' => 'pvu', 'Phvul.L007043' => 'pvu', 'Potri.001G242300' => 'ptr', 'Potri.002G185300' => 'ptr', 'Potri.006G086900' => 'ptr', 'Potri.008G151700' => 'ptr', 'Potri.009G033500' => 'ptr', 'Potri.010G089300' => 'ptr', 'Potri.014G110800' => 'ptr', 'Pp3c27_8130' => 'ppa', 'Pp3c6_27410' => 'ppa', 'PRCOL_00001659' => 'pco', 'PRCOL_00001927' => 'pco', 'PRCOL_00003649' => 'pco', 'Prupe.1G011600' => 'ppe', 'Prupe.3G000800' => 'ppe', 'Prupe.3G001100' => 'ppe', 'Prupe.6G072700' => 'ppe', 'Prupe.6G072800' => 'ppe', 'Prupe.6G257300' => 'ppe', 'Prupe.8G033000' => 'ppe', 'Psat0s2633g0080' => 'psa', 'Psat0s3396g0080' => 'psa', 'Psat0s3396g0200' => 'psa', 'Psat3g139080' => 'psa', 'Psat5g285080' => 'psa', 'Psat6g157760' => 'psa', 'Psat6g208440' => 'psa', 'Psat7g215320' => 'psa', 'Psat7g215400' => 'psa', 'Psat7g235600' => 'psa', 'Psat7g235760' => 'psa', 'PSO063G4603' => 'pso', 'PSO210G0182' => 'pso', 'PSO210G0196' => 'pso', 'PSO339G0394' => 'pso', 'PSO339G4127' => 'pso', 'PSO513G0064' => 'pso', 'PSO761G0079' => 'pso', 'QL01p031003' => 'qlo', 'QL01p031078' => 'qlo', 'QL06p003004' => 'qlo', 'QL07p048731' => 'qlo', 'QL09p037427' => 'qlo', 'RcHm_v2.0_Chr3g0466361' => 'rch', 'RcHm_v2.0_Chr3g0485571' => 'rch', 'RcHm_v2.0_Chr4g0416551' => 'rch', 'RcHm_v2.0_Chr5g0065831' => 'rch', 'Rhsim01G0230500' => 'rsi', 'Rhsim05G0194000' => 'rsi', 'Rhsim08G0250400' => 'rsi', 'Sabra02G0131000' => 'sbr', 'Sabra06G0066300' => 'sbr', 'Sabra08G0115500' => 'sbr', 'Sabra09G0023900' => 'sbr', 'Sabra10G0054000' => 'sbr', 'Sabra14G0081500' => 'sbr', 'Sabra16G0147100' => 'sbr', 'SalBow2G2957' => 'sbo', 'SalBow4G3320' => 'sbo', 'SalBow8G1894' => 'sbo', 'Sc07g0007950' => 'sci', 'Sc12g0001360' => 'sci', 'Sc13g0004330' => 'sci', 'Sc20g0005010' => 'sci', 'Sed0000361' => 'sed', 'Sed0001706' => 'sed', 'Sed0002422' => 'sed', 'Sed0004029' => 'sed', 'Sed0004602' => 'sed', 'Sed0004943' => 'sed', 'Sed0008646' => 'sed', 'Sed0023313' => 'sed', 'Sed0024843' => 'sed', 'SEGI_00081' => 'sgi', 'SEGI_00947' => 'sgi', 'SEGI_04046' => 'sgi', 'SEGI_06880' => 'sgi', 'SEGI_09736' => 'sgi', 'SEGI_12741' => 'sgi', 'SEGI_14530' => 'sgi', 'SEGI_20705' => 'sgi', 'SEGI_26088' => 'sgi', 'SEGI_28323' => 'sgi', 'SEGI_33343' => 'sgi', 'SGA_v2.0_scaffold126G33775' => 'sas', 'SGA_v2.0_scaffold2G01337' => 'sas', 'SGA_v2.0_scaffold38G15006' => 'sas', 'SGA_v2.0_scaffold39G15264' => 'sas', 'SGA_v2.0_scaffold453G51880' => 'sas', 'SHI12696' => 'shi', 'SMO367G1096' => 'smo', 'Solyc01g068630.3' => 'sly', 'Solyc05g011880.3' => 'sly', 'Solyc06g076300.3' => 'sly', 'Solyc09g010940.4' => 'sly', 'Solyc09g075890.3' => 'sly', 'Sopen01g030560' => 'spe', 'Sopen05g006630' => 'spe', 'Sopen06g032720' => 'spe', 'Sopen09g005660' => 'spe', 'Sopen09g030690' => 'spe', 'Sp4g14540' => 'spa', 'Sp4g20030' => 'spa', 'Sp5g01320' => 'spa', 'Sp6g21170' => 'spa', 'Sp6g21180' => 'spa', 'Sp6g21190' => 'spa', 'Sp6g40220' => 'spa', 'TAR362G0122' => 'tar', 'TAR362G1338' => 'tar', 'TAR369G0590' => 'tar', 'TAR371G0824' => 'tar', 'TAR622G1429' => 'tar', 'TAR623G0734' => 'tar', 'TAR625G0441' => 'tar', 'TAR629G0976' => 'tar', 'TAR633G1195' => 'tar', 'TAR636G2660' => 'tar', 'THA.LOC104799440' => 'tha', 'THA.LOC104800966' => 'tha', 'THA.LOC104806559' => 'tha', 'THA.LOC104810765' => 'tha', 'THA.LOC104816266' => 'tha', 'THA.LOC104817419' => 'tha', 'THA.LOC104827021' => 'tha', 'Thecc.01G327400' => 'tca', 'Thecc.04G229200' => 'tca', 'Thecc.05G037400' => 'tca', 'Thecc.09G318600' => 'tca', 'Thecc.09G318700' => 'tca', 'Thhalv10006238m.g' => 'esa', 'Thhalv10014321m.g' => 'esa', 'Thhalv10014335m.g' => 'esa', 'Thhalv10015826m.g' => 'esa', 'Thhalv10017107m.g' => 'esa', 'Thhalv10017180m.g' => 'esa', 'Thhalv10029339m.g' => 'esa', 'TPR.G1699' => 'tpr', 'TPR.G23609' => 'tpr', 'TPR.G3081' => 'tpr', 'TPR.G40397' => 'tpr', 'TPR.G5522' => 'tpr', 'TPR.G5618' => 'tpr', 'TPR.G5626' => 'tpr', 'TWI09G1632' => 'twi', 'TWI23G1230' => 'twi', 'TWI53G1064' => 'twi', 'TWI59G0751' => 'twi', 'TWI74G0947' => 'twi', 'TWI77G0337' => 'twi', 'TWI79G1254' => 'twi', 'unitig_0.g2341' => 'ugi', 'unitig_26.g10006' => 'ugi', 'unitig_26.g10008' => 'ugi', 'unitig_26.g9192' => 'ugi', 'vmacro14547' => 'vma', 'vmacro15333' => 'vma', 'vmacro18743' => 'vma', 'vmacro20166' => 'vma', 'VMungo0331G0523' => 'vmu', 'VMungo0331G1202' => 'vmu', 'VMungo0720G1228' => 'vmu', 'VMungo0720G1514' => 'vmu', 'VMungo1080G0169' => 'vmu', 'VMungo1127G1475' => 'vmu', 'VMungo1383G1208' => 'vmu', 'VMungo1383G1698' => 'vmu', 'Zm00001eb012270' => 'zma', 'Zm00001eb054100' => 'zma', 'Zm00001eb063350' => 'zma', 'Zm00001eb328560' => 'zma', 'Zm00001eb342820' => 'zma', 'Zm00001eb362210' => 'zma', 'Zm00001eb397730' => 'zma', 'Zm00001eb399750' => 'zma' ) $gf_id = 'HOM05D000959' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000959' ) $data_identifier = 'HOM05D000959' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 5, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 5, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 10, 'mbi' => (int) 3, 'mco' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 2, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 3, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 11, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399750' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000959', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '622', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p07100' => 'bna', 'A03p11720' => 'bna', 'A05p08300' => 'bna', 'A05p13380' => 'bna', 'A09p54130' => 'bna', 'A10p16690' => 'bna', 'A10p16700' => 'bna', 'A10p33390' => 'bna', 'Aa31LG10G16020' => 'aar', 'Aa31LG1G11810' => 'aar', 'Aa31LG1G11830' => 'aar', 'Aa31LG1G22510' => 'aar', 'Aa31LG5G4890' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5793' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2310' => 'aag', 'Actinidia08499' => 'ach', 'Actinidia11262' => 'ach', 'Actinidia23926' => 'ach', 'Actinidia34420' => 'ach', 'Actinidia36970' => 'ach', 'Ah.02g111220' => 'amhyb', 'Ah.15g097750' => 'amhyb', 'AL4G27500' => 'aly', 'AL6G11470' => 'aly', 'AL8G35950' => 'aly', 'AL8G35960' => 'aly', 'AL8G35970' => 'aly', 'Aqoxy1G00912' => 'aox', 'Aqoxy2G02253' => 'aox', 'Aqoxy2G02411' => 'aox', 'Aqoxy5G00485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BZ66YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K8ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM4FUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6BF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HFV7XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25JBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0YNNV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MAKK6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P70IT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP2Z6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V61LZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YWP64R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3S9AI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7PGHH' => 'arhy', 'AT2G32150' => 'ath', 'AT3G62040' => 'ath', 'AT5G02230' => 'ath', 'AT5G59480' => 'ath', 'AT5G59490' => 'ath', 'ATR0332G060' => 'atr', 'ATR0559G190' => 'atr', 'ATR0693G294' => 'atr', 'Atru.chr3.3975' => 'acertr', 'Atru.chr3.3976' => 'acertr', 'Atru.chr3.3977' => 'acertr', 'Atru.chr4.2498' => 'acertr', 'Atru.chr5.838' => 'acertr', 'Atru.chr8.1990' => 'acertr', 'Atru.chr8.1991' => 'acertr', 'Atru.chr8.1992' => 'acertr', 'AUR62001759' => 'cqu', 'AUR62009545' => 'cqu', 'AUR62010474' => 'cqu', 'AUR62025820' => 'cqu', 'AUR62030422' => 'cqu', 'AUR62033605' => 'cqu', 'AUR62038615' => 'cqu', 'AUR62041347' => 'cqu', 'BcaB01g04574' => 'bca', 'BcaB02g09263' => 'bca', 'BcaB02g10453' => 'bca', 'BcaB05g22513' => 'bca', 'BcaB08g36253' => 'bca', 'BcaB08g36254' => 'bca', 'BcaC01g06519' => 'bca', 'BcaC02g11889' => 'bca', 'BcaC03g14010' => 'bca', 'BcaC03g18439' => 'bca', 'BcaC04g19765' => 'bca', 'BcaC09g48432' => 'bca', 'BcaNung07302' => 'bca', 'BolC2t06040H' => 'bol', 'BolC2t07346H' => 'bol', 'BolC3t13817H' => 'bol', 'BolC4t22625H' => 'bol', 'BolC4t23297H' => 'bol', 'BolC8t51278H' => 'bol', 'BolC9t58050H' => 'bol', 'BolC9t58051H' => 'bol', 'BolC9t60163H' => 'bol', 'BraA02t04712Z' => 'bra', 'BraA02t05791Z' => 'bra', 'BraA03t10483Z' => 'bra', 'BraA05t19795Z' => 'bra', 'BraA05t20276Z' => 'bra', 'BraA09t40827Z' => 'bra', 'BraA10t43750Z' => 'bra', 'BraA10t43751Z' => 'bra', 'BraA10t45370Z' => 'bra', 'C02p00400' => 'bna', 'C02p12460' => 'bna', 'C03p13680' => 'bna', 'C04p10270' => 'bna', 'C04p17500' => 'bna', 'C08p37010' => 'bna', 'C09p51880' => 'bna', 'C09p51890' => 'bna', 'C09p74300' => 'bna', 'CAN.G179.26' => 'can', 'CAN.G3384.1' => 'can', 'CAN.G394.68' => 'can', 'CAN.G907.13' => 'can', 'CANSAT11G0012' => 'cansat', 'CANSAT25G1586' => 'cansat', 'CANSAT35G0735' => 'cansat', 'CANSAT54G0556' => 'cansat', 'CANSAT64G0356' => 'cansat', 'CANSAT78G2042' => 'cansat', 'CARHR125920' => 'chi', 'CARHR131910' => 'chi', 'CARHR172390' => 'chi', 'CARHR211140' => 'chi', 'CARHR285850' => 'chi', 'CARHR285860' => 'chi', 'Carub.0004s1347' => 'cru', 'Carub.0004s1960' => 'cru', 'Carub.0005s2880' => 'cru', 'Carub.0006s0107' => 'cru', 'Carub.0008s2015' => 'cru', 'Carub.0008s2016' => 'cru', 'Carub.0008s2017' => 'cru', 'Ca_01315_v3' => 'car', 'Ca_05063_v3' => 'car', 'Ca_10231_v3' => 'car', 'Ca_10913_v3' => 'car', 'Ca_19156_v3' => 'car', 'Ca_23644_v3' => 'car', 'Ca_26735_v3' => 'car', 'Cc01_g13130' => 'ccan', 'Cc02_g21690' => 'ccan', 'Cc03_g03600' => 'ccan', 'Cc06_g02510' => 'ccan', 'CDE02G1265' => 'cde', 'CDE05G0415' => 'cde', 'CDE08G1082' => 'cde', 'Cfa005780' => 'cfa', 'Cfa011522' => 'cfa', 'Cfa011523' => 'cfa', 'Cfa015627' => 'cfa', 'Cfa017359' => 'cfa', 'Ciclev10005687m.g' => 'ccl', 'Ciclev10012173m.g' => 'ccl', 'Ciclev10021621m.g' => 'ccl', 'Ciclev10028968m.g' => 'ccl', 'Ciclev10029907m.g' => 'ccl', 'CiPaw.01G164800' => 'cil', 'CiPaw.07G083700' => 'cil', 'CiPaw.07G127000' => 'cil', 'CiPaw.07G136900' => 'cil', 'CiPaw.08G081700' => 'cil', 'CiPaw.09G194600' => 'cil', 'CiPaw.10G146500' => 'cil', 'CiPaw.13G091500' => 'cil', 'CiPaw.13G091600' => 'cil', 'ClCG00G003390' => 'cla', 'ClCG01G007220' => 'cla', 'ClCG03G001370' => 'cla', 'ClCG04G008100' => 'cla', 'ClCG06G006110' => 'cla', 'ClCG06G006130' => 'cla', 'ClCG10G021210' => 'cla', 'COL.COLO4_07648' => 'col', 'COL.COLO4_07650' => 'col', 'COL.COLO4_07651' => 'col', 'COL.COLO4_14780' => 'col', 'COL.COLO4_18546' => 'col', 'COL.COLO4_18547' => 'col', 'COL.COLO4_23103' => 'col', 'COL.COLO4_30419' => 'col', 'COL.COLO4_34232' => 'col', 'Cpa.g.sc169.20' => 'cpa', 'Cpa.g.sc57.45' => 'cpa', 'Cpa.g.sc58.124' => 'cpa', 'Cpa.g.sc58.125' => 'cpa', 'Cpa.g.sc81.118' => 'cpa', 'Cpa.g.sc81.119' => 'cpa', 'Cre12.g524700' => 'cre', 'CsaV3_1G034430' => 'csa', 'CsaV3_1G034440' => 'csa', 'CsaV3_1G034450' => 'csa', 'CsaV3_3G034830' => 'csa', 'CsaV3_4G025090' => 'csa', 'CsaV3_5G018660' => 'csa', 'CsaV3_6G038160' => 'csa', 'CSS0003447' => 'camsi', 'CSS0017840' => 'camsi', 'CSS0019260' => 'camsi', 'CSS0040375' => 'camsi', 'CSS0042533' => 'camsi', 'DCAR_005960' => 'dca', 'DCAR_012104' => 'dca', 'DCAR_012105' => 'dca', 'DCAR_012293' => 'dca', 'DCAR_015632' => 'dca', 'DCAR_024602' => 'dca', 'DCAR_028752' => 'dca', 'Dinv06261' => 'din', 'Dinv13982' => 'din', 'Dinv17029' => 'din', 'Dinv18463' => 'din', 'Dinv33181' => 'din', 'Dinv35585' => 'din', 'Dinv37161' => 'din', 'Dinv42977' => 'din', 'Dinv43122' => 'din', 'Dinv44517' => 'din', 'Duzib093G0256' => 'dzi', 'Duzib106G1254' => 'dzi', 'Duzib128G1789' => 'dzi', 'Duzib133G0633' => 'dzi', 'Duzib138G0510' => 'dzi', 'Duzib150G1084' => 'dzi', 'Duzib168G0488' => 'dzi', 'Duzib168G1523' => 'dzi', 'Duzib170G0133' => 'dzi', 'ECA234G1433' => 'eca', 'ECA236G1432' => 'eca', 'ECA236G2256' => 'eca', 'ECA236G2365' => 'eca', 'ECA236G4830' => 'eca', 'ECA248G1505' => 'eca', 'EL10Ac3g06431' => 'bvu', 'EL10Ac5g12577' => 'bvu', 'EL10Ac6g13533' => 'bvu', 'EL10Ac7g16045' => 'bvu', 'Eucgr.A01281' => 'egr', 'Eucgr.B02326' => 'egr', 'Eucgr.H03532' => 'egr', 'Eucgr.K00553' => 'egr', 'Eucgr.K03116' => 'egr', 'FAN02G3963' => 'fan', 'FAN05G0438' => 'fan', 'FAN09G2434' => 'fan', 'FAN12G3984' => 'fan', 'FAN14G0798' => 'fan', 'FAN17G0652' => 'fan', 'FAN19G1988' => 'fan', 'FAN22G0632' => 'fan', 'FAN23G0387' => 'fan', 'FAN26G1323' => 'fan', 'FAN28G0666' => 'fan', 'FvH4_1g26080' => 'fve', 'FvH4_3g36780' => 'fve', 'FvH4_4g15270' => 'fve', 'FvH4_6g13490' => 'fve', 'Glyma.01G098700' => 'gma', 'Glyma.03G065900' => 'gma', 'Glyma.03G073754' => 'gma', 'Glyma.03G073758' => 'gma', 'Glyma.03G083200' => 'gma', 'Glyma.03G225500' => 'gma', 'Glyma.05G037766' => 'gma', 'Glyma.07G133500' => 'gma', 'Glyma.10G139400' => 'gma', 'Glyma.10G248900' => 'gma', 'Glyma.11G137800' => 'gma', 'Glyma.12G061300' => 'gma', 'Glyma.13G337900' => 'gma', 'Glyma.15G036600' => 'gma', 'Glyma.18G182800' => 'gma', 'Glyma.19G222500' => 'gma', 'Glyma.20G144800' => 'gma', 'Gohir.A01G222000' => 'ghi', 'Gohir.A03G044000' => 'ghi', 'Gohir.A03G044100' => 'ghi', 'Gohir.A04G083100' => 'ghi', 'Gohir.A07G127200' => 'ghi', 'Gohir.A07G132400' => 'ghi', 'Gohir.A08G000700' => 'ghi', 'Gohir.A11G327300' => 'ghi', 'Gohir.D01G211500' => 'ghi', 'Gohir.D03G123400' => 'ghi', 'Gohir.D03G123500' => 'ghi', 'Gohir.D04G121800' => 'ghi', 'Gohir.D07G131500' => 'ghi', 'Gohir.D07G136600' => 'ghi', 'Gohir.D08G011600' => 'ghi', 'Gohir.D11G346200' => 'ghi', 'Gorai.001G142800' => 'gra', 'Gorai.001G148700' => 'gra', 'Gorai.002G257300' => 'gra', 'Gorai.003G130000' => 'gra', 'Gorai.003G130100' => 'gra', 'Gorai.004G005300' => 'gra', 'Gorai.007G376500' => 'gra', 'Gorai.012G104700' => 'gra', 'GSVIVG01017946001' => 'vvi', 'GSVIVG01024928001' => 'vvi', 'GSVIVG01028227001' => 'vvi', 'GSVIVG01034151001' => 'vvi', 'HanXRQChr05g0135031' => 'han', 'HanXRQChr05g0135041' => 'han', 'HanXRQChr05g0140021' => 'han', 'HanXRQChr06g0178981' => 'han', 'HanXRQChr07g0188251' => 'han', 'HanXRQChr08g0235311' => 'han', 'HanXRQChr09g0271011' => 'han', 'HanXRQChr10g0293321' => 'han', 'HanXRQChr13g0388171' => 'han', 'Haze_00916' => 'cav', 'Haze_05063' => 'cav', 'Haze_20814' => 'cav', 'Haze_24128' => 'cav', 'Hma1.2p1_0745F.1_g212010' => 'hma', 'Hma1.2p1_0757F.1_g213260' => 'hma', 'Hma1.2p1_0936F.1_g238840' => 'hma', 'Hma1.2p1_1735F.1_g299890' => 'hma', 'Hma1.2p1_1861F.1_g305685' => 'hma', 'HPP92_003397' => 'vpl', 'HPP92_012597' => 'vpl', 'HPP92_015520' => 'vpl', 'HPP92_015539' => 'vpl', 'HPP92_020373' => 'vpl', 'Hund04938' => 'sun', 'Hund10677' => 'sun', 'Hund11033' => 'sun', 'Hund12155' => 'sun', 'Lalb_Chr01g0022551' => 'lal', 'Lalb_Chr03g0042341' => 'lal', 'Lalb_Chr07g0192931' => 'lal', 'Lalb_Chr12g0209551' => 'lal', 'Lalb_Chr19g0125251' => 'lal', 'Lalb_Chr19g0137891' => 'lal', 'Lalb_Chr21g0304641' => 'lal', 'Lalb_Chr21g0309881' => 'lal', 'Lj1A5T12' => 'lonja', 'Lj1C148G10' => 'lonja', 'Lj2A93T83' => 'lonja', 'Lj3A738G68' => 'lonja', 'Lj3C966T1' => 'lonja', 'Lj3g0018958' => 'lja', 'Lj3g0021831' => 'lja', 'Lj3g0025443' => 'lja', 'Lj4g0026809' => 'lja', 'Lj5g0012558' => 'lja', 'Lj5g0021586' => 'lja', 'Lsat_1_v5_gn_5_156840' => 'lsa', 'Lsat_1_v5_gn_8_73460' => 'lsa', 'Lsat_1_v5_gn_8_73481' => 'lsa', 'Lsat_1_v5_gn_9_31601' => 'lsa', 'Lsat_1_v5_gn_9_77320' => 'lsa', 'Manes.01G171300' => 'mes', 'Manes.01G171400' => 'mes', 'Manes.01G236100' => 'mes', 'Manes.02G130500' => 'mes', 'Manes.02G130600' => 'mes', 'Manes.03G180200' => 'mes', 'Manes.05G007000' => 'mes', 'Manes.08G084400' => 'mes', 'Manes.09G092600' => 'mes', 'Manes.15G027900' => 'mes', 'MBI04_g40948_MAGBIO' => 'mbi', 'MBI14_g12123_MAGBIO' => 'mbi', 'MBI18_g28915_MAGBIO' => 'mbi', 'MCO09G053' => 'mco', 'MCO11G782' => 'mco', 'MCO15G215' => 'mco', 'MD03G1088500' => 'mdo', 'MD03G1088600' => 'mdo', 'MD04G1130800' => 'mdo', 'MD09G1291700' => 'mdo', 'MD11G1097500' => 'mdo', 'MD11G1097600' => 'mdo', 'MD12G1143900' => 'mdo', 'MD13G1191400' => 'mdo', 'MD16G1191500' => 'mdo', 'Medtr1g085570' => 'mtr', 'Medtr1g104610' => 'mtr', 'Medtr2g097520' => 'mtr', 'Medtr4g021800' => 'mtr', 'Medtr4g021825' => 'mtr', 'Medtr4g064270' => 'mtr', 'Medtr4g064380' => 'mtr', 'Medtr7g062150' => 'mtr', 'MELO3C003138.2' => 'cme', 'MELO3C005187.2' => 'cme', 'MELO3C009252.2' => 'cme', 'MELO3C014481.2' => 'cme', 'MELO3C020616.2' => 'cme', 'MELO3C020617.2' => 'cme', 'MELO3C020618.2' => 'cme', 'Migut.G00328' => 'egut', 'Migut.J00320' => 'egut', 'Migut.L01000' => 'egut', 'Migut.L01953' => 'egut', 'MSTRG.10253' => 'ama', 'MSTRG.19077' => 'ama', 'MSTRG.26780' => 'ama', 'MSTRG.4023' => 'ama', 'MSTRG.5655' => 'ama', 'MSTRG.9992' => 'ama', 'Nitab4.5_0000043g0310' => 'nta', 'Nitab4.5_0000463g0080' => 'nta', 'Nitab4.5_0000705g0170' => 'nta', 'Nitab4.5_0001326g0060' => 'nta', 'Nitab4.5_0001628g0030' => 'nta', 'Nitab4.5_0002103g0110' => 'nta', 'Nitab4.5_0002946g0030' => 'nta', 'Nitab4.5_0004639g0030' => 'nta', 'Nn2g11149' => 'nnu', 'Nn2g13389' => 'nnu', 'Nn4g25326' => 'nnu', 'Nn4g26290' => 'nnu', 'Nn5g29865' => 'nnu', 'Oeu004163.1' => 'oeu', 'Oeu006901.1' => 'oeu', 'Oeu010096.1' => 'oeu', 'Oeu024340.1' => 'oeu', 'Oeu048369.1' => 'oeu', 'Os01g0973000' => 'osa', 'Os03g0273800' => 'osa', 'Os03g0701200' => 'osa', 'Os03g0834050' => 'osa', 'Os07g0634400' => 'osa', 'Peaxi162Scf00092g01414' => 'pax', 'Peaxi162Scf00165g00818' => 'pax', 'Peaxi162Scf00309g00516' => 'pax', 'Peaxi162Scf00774g00218' => 'pax', 'PGR004G1824' => 'pgr', 'PGR004G2606' => 'pgr', 'PGR031G2716' => 'pgr', 'PGR102G2460' => 'pgr', 'PGR142G2599' => 'pgr', 'PGSC0003DMG400000843' => 'stu', 'PGSC0003DMG400008829' => 'stu', 'PGSC0003DMG400030418' => 'stu', 'PGSC0003DMG400031834' => 'stu', 'PGSC0003DMG401028300' => 'stu', 'PGSC0003DMG402028300' => 'stu', 'Phvul.001G219300' => 'pvu', 'Phvul.007G056000' => 'pvu', 'Phvul.007G208000' => 'pvu', 'Phvul.008G119500' => 'pvu', 'Phvul.010G011200' => 'pvu', 'Phvul.010G014800' => 'pvu', 'Phvul.011G062900' => 'pvu', 'Phvul.L007043' => 'pvu', 'Potri.001G242300' => 'ptr', 'Potri.002G185300' => 'ptr', 'Potri.006G086900' => 'ptr', 'Potri.008G151700' => 'ptr', 'Potri.009G033500' => 'ptr', 'Potri.010G089300' => 'ptr', 'Potri.014G110800' => 'ptr', 'Pp3c27_8130' => 'ppa', 'Pp3c6_27410' => 'ppa', 'PRCOL_00001659' => 'pco', 'PRCOL_00001927' => 'pco', 'PRCOL_00003649' => 'pco', 'Prupe.1G011600' => 'ppe', 'Prupe.3G000800' => 'ppe', 'Prupe.3G001100' => 'ppe', 'Prupe.6G072700' => 'ppe', 'Prupe.6G072800' => 'ppe', 'Prupe.6G257300' => 'ppe', 'Prupe.8G033000' => 'ppe', 'Psat0s2633g0080' => 'psa', 'Psat0s3396g0080' => 'psa', 'Psat0s3396g0200' => 'psa', 'Psat3g139080' => 'psa', 'Psat5g285080' => 'psa', 'Psat6g157760' => 'psa', 'Psat6g208440' => 'psa', 'Psat7g215320' => 'psa', 'Psat7g215400' => 'psa', 'Psat7g235600' => 'psa', 'Psat7g235760' => 'psa', 'PSO063G4603' => 'pso', 'PSO210G0182' => 'pso', 'PSO210G0196' => 'pso', 'PSO339G0394' => 'pso', 'PSO339G4127' => 'pso', 'PSO513G0064' => 'pso', 'PSO761G0079' => 'pso', 'QL01p031003' => 'qlo', 'QL01p031078' => 'qlo', 'QL06p003004' => 'qlo', 'QL07p048731' => 'qlo', 'QL09p037427' => 'qlo', 'RcHm_v2.0_Chr3g0466361' => 'rch', 'RcHm_v2.0_Chr3g0485571' => 'rch', 'RcHm_v2.0_Chr4g0416551' => 'rch', 'RcHm_v2.0_Chr5g0065831' => 'rch', 'Rhsim01G0230500' => 'rsi', 'Rhsim05G0194000' => 'rsi', 'Rhsim08G0250400' => 'rsi', 'Sabra02G0131000' => 'sbr', 'Sabra06G0066300' => 'sbr', 'Sabra08G0115500' => 'sbr', 'Sabra09G0023900' => 'sbr', 'Sabra10G0054000' => 'sbr', 'Sabra14G0081500' => 'sbr', 'Sabra16G0147100' => 'sbr', 'SalBow2G2957' => 'sbo', 'SalBow4G3320' => 'sbo', 'SalBow8G1894' => 'sbo', 'Sc07g0007950' => 'sci', 'Sc12g0001360' => 'sci', 'Sc13g0004330' => 'sci', 'Sc20g0005010' => 'sci', 'Sed0000361' => 'sed', 'Sed0001706' => 'sed', 'Sed0002422' => 'sed', 'Sed0004029' => 'sed', 'Sed0004602' => 'sed', 'Sed0004943' => 'sed', 'Sed0008646' => 'sed', 'Sed0023313' => 'sed', 'Sed0024843' => 'sed', 'SEGI_00081' => 'sgi', 'SEGI_00947' => 'sgi', 'SEGI_04046' => 'sgi', 'SEGI_06880' => 'sgi', 'SEGI_09736' => 'sgi', 'SEGI_12741' => 'sgi', 'SEGI_14530' => 'sgi', 'SEGI_20705' => 'sgi', 'SEGI_26088' => 'sgi', 'SEGI_28323' => 'sgi', 'SEGI_33343' => 'sgi', 'SGA_v2.0_scaffold126G33775' => 'sas', 'SGA_v2.0_scaffold2G01337' => 'sas', 'SGA_v2.0_scaffold38G15006' => 'sas', 'SGA_v2.0_scaffold39G15264' => 'sas', 'SGA_v2.0_scaffold453G51880' => 'sas', 'SHI12696' => 'shi', 'SMO367G1096' => 'smo', 'Solyc01g068630.3' => 'sly', 'Solyc05g011880.3' => 'sly', 'Solyc06g076300.3' => 'sly', 'Solyc09g010940.4' => 'sly', 'Solyc09g075890.3' => 'sly', 'Sopen01g030560' => 'spe', 'Sopen05g006630' => 'spe', 'Sopen06g032720' => 'spe', 'Sopen09g005660' => 'spe', 'Sopen09g030690' => 'spe', 'Sp4g14540' => 'spa', 'Sp4g20030' => 'spa', 'Sp5g01320' => 'spa', 'Sp6g21170' => 'spa', 'Sp6g21180' => 'spa', 'Sp6g21190' => 'spa', 'Sp6g40220' => 'spa', 'TAR362G0122' => 'tar', 'TAR362G1338' => 'tar', 'TAR369G0590' => 'tar', 'TAR371G0824' => 'tar', 'TAR622G1429' => 'tar', 'TAR623G0734' => 'tar', 'TAR625G0441' => 'tar', 'TAR629G0976' => 'tar', 'TAR633G1195' => 'tar', 'TAR636G2660' => 'tar', 'THA.LOC104799440' => 'tha', 'THA.LOC104800966' => 'tha', 'THA.LOC104806559' => 'tha', 'THA.LOC104810765' => 'tha', 'THA.LOC104816266' => 'tha', 'THA.LOC104817419' => 'tha', 'THA.LOC104827021' => 'tha', 'Thecc.01G327400' => 'tca', 'Thecc.04G229200' => 'tca', 'Thecc.05G037400' => 'tca', 'Thecc.09G318600' => 'tca', 'Thecc.09G318700' => 'tca', 'Thhalv10006238m.g' => 'esa', 'Thhalv10014321m.g' => 'esa', 'Thhalv10014335m.g' => 'esa', 'Thhalv10015826m.g' => 'esa', 'Thhalv10017107m.g' => 'esa', 'Thhalv10017180m.g' => 'esa', 'Thhalv10029339m.g' => 'esa', 'TPR.G1699' => 'tpr', 'TPR.G23609' => 'tpr', 'TPR.G3081' => 'tpr', 'TPR.G40397' => 'tpr', 'TPR.G5522' => 'tpr', 'TPR.G5618' => 'tpr', 'TPR.G5626' => 'tpr', 'TWI09G1632' => 'twi', 'TWI23G1230' => 'twi', 'TWI53G1064' => 'twi', 'TWI59G0751' => 'twi', 'TWI74G0947' => 'twi', 'TWI77G0337' => 'twi', 'TWI79G1254' => 'twi', 'unitig_0.g2341' => 'ugi', 'unitig_26.g10006' => 'ugi', 'unitig_26.g10008' => 'ugi', 'unitig_26.g9192' => 'ugi', 'vmacro14547' => 'vma', 'vmacro15333' => 'vma', 'vmacro18743' => 'vma', 'vmacro20166' => 'vma', 'VMungo0331G0523' => 'vmu', 'VMungo0331G1202' => 'vmu', 'VMungo0720G1228' => 'vmu', 'VMungo0720G1514' => 'vmu', 'VMungo1080G0169' => 'vmu', 'VMungo1127G1475' => 'vmu', 'VMungo1383G1208' => 'vmu', 'VMungo1383G1698' => 'vmu', 'Zm00001eb012270' => 'zma', 'Zm00001eb054100' => 'zma', 'Zm00001eb063350' => 'zma', 'Zm00001eb328560' => 'zma', 'Zm00001eb342820' => 'zma', 'Zm00001eb362210' => 'zma', 'Zm00001eb397730' => 'zma', 'Zm00001eb399750' => 'zma' ), 'gf_id' => 'HOM05D000959', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000959' ), 'data_identifier' => 'HOM05D000959', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000959', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '622', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p07100' => 'bna', 'A03p11720' => 'bna', 'A05p08300' => 'bna', 'A05p13380' => 'bna', 'A09p54130' => 'bna', 'A10p16690' => 'bna', 'A10p16700' => 'bna', 'A10p33390' => 'bna', 'Aa31LG10G16020' => 'aar', 'Aa31LG1G11810' => 'aar', 'Aa31LG1G11830' => 'aar', 'Aa31LG1G22510' => 'aar', 'Aa31LG5G4890' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5793' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2310' => 'aag', 'Actinidia08499' => 'ach', 'Actinidia11262' => 'ach', 'Actinidia23926' => 'ach', 'Actinidia34420' => 'ach', 'Actinidia36970' => 'ach', 'Ah.02g111220' => 'amhyb', 'Ah.15g097750' => 'amhyb', 'AL4G27500' => 'aly', 'AL6G11470' => 'aly', 'AL8G35950' => 'aly', 'AL8G35960' => 'aly', 'AL8G35970' => 'aly', 'Aqoxy1G00912' => 'aox', 'Aqoxy2G02253' => 'aox', 'Aqoxy2G02411' => 'aox', 'Aqoxy5G00485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BZ66YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K8ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM4FUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6BF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HFV7XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25JBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0YNNV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MAKK6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P70IT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP2Z6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V61LZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YWP64R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3S9AI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7PGHH' => 'arhy', 'AT2G32150' => 'ath', 'AT3G62040' => 'ath', 'AT5G02230' => 'ath', 'AT5G59480' => 'ath', 'AT5G59490' => 'ath', 'ATR0332G060' => 'atr', 'ATR0559G190' => 'atr', 'ATR0693G294' => 'atr', 'Atru.chr3.3975' => 'acertr', 'Atru.chr3.3976' => 'acertr', 'Atru.chr3.3977' => 'acertr', 'Atru.chr4.2498' => 'acertr', 'Atru.chr5.838' => 'acertr', 'Atru.chr8.1990' => 'acertr', 'Atru.chr8.1991' => 'acertr', 'Atru.chr8.1992' => 'acertr', 'AUR62001759' => 'cqu', 'AUR62009545' => 'cqu', 'AUR62010474' => 'cqu', 'AUR62025820' => 'cqu', 'AUR62030422' => 'cqu', 'AUR62033605' => 'cqu', 'AUR62038615' => 'cqu', 'AUR62041347' => 'cqu', 'BcaB01g04574' => 'bca', 'BcaB02g09263' => 'bca', 'BcaB02g10453' => 'bca', 'BcaB05g22513' => 'bca', 'BcaB08g36253' => 'bca', 'BcaB08g36254' => 'bca', 'BcaC01g06519' => 'bca', 'BcaC02g11889' => 'bca', 'BcaC03g14010' => 'bca', 'BcaC03g18439' => 'bca', 'BcaC04g19765' => 'bca', 'BcaC09g48432' => 'bca', 'BcaNung07302' => 'bca', 'BolC2t06040H' => 'bol', 'BolC2t07346H' => 'bol', 'BolC3t13817H' => 'bol', 'BolC4t22625H' => 'bol', 'BolC4t23297H' => 'bol', 'BolC8t51278H' => 'bol', 'BolC9t58050H' => 'bol', 'BolC9t58051H' => 'bol', 'BolC9t60163H' => 'bol', 'BraA02t04712Z' => 'bra', 'BraA02t05791Z' => 'bra', 'BraA03t10483Z' => 'bra', 'BraA05t19795Z' => 'bra', 'BraA05t20276Z' => 'bra', 'BraA09t40827Z' => 'bra', 'BraA10t43750Z' => 'bra', 'BraA10t43751Z' => 'bra', 'BraA10t45370Z' => 'bra', 'C02p00400' => 'bna', 'C02p12460' => 'bna', 'C03p13680' => 'bna', 'C04p10270' => 'bna', 'C04p17500' => 'bna', 'C08p37010' => 'bna', 'C09p51880' => 'bna', 'C09p51890' => 'bna', 'C09p74300' => 'bna', 'CAN.G179.26' => 'can', 'CAN.G3384.1' => 'can', 'CAN.G394.68' => 'can', 'CAN.G907.13' => 'can', 'CANSAT11G0012' => 'cansat', 'CANSAT25G1586' => 'cansat', 'CANSAT35G0735' => 'cansat', 'CANSAT54G0556' => 'cansat', 'CANSAT64G0356' => 'cansat', 'CANSAT78G2042' => 'cansat', 'CARHR125920' => 'chi', 'CARHR131910' => 'chi', 'CARHR172390' => 'chi', 'CARHR211140' => 'chi', 'CARHR285850' => 'chi', 'CARHR285860' => 'chi', 'Carub.0004s1347' => 'cru', 'Carub.0004s1960' => 'cru', 'Carub.0005s2880' => 'cru', 'Carub.0006s0107' => 'cru', 'Carub.0008s2015' => 'cru', 'Carub.0008s2016' => 'cru', 'Carub.0008s2017' => 'cru', 'Ca_01315_v3' => 'car', 'Ca_05063_v3' => 'car', 'Ca_10231_v3' => 'car', 'Ca_10913_v3' => 'car', 'Ca_19156_v3' => 'car', 'Ca_23644_v3' => 'car', 'Ca_26735_v3' => 'car', 'Cc01_g13130' => 'ccan', 'Cc02_g21690' => 'ccan', 'Cc03_g03600' => 'ccan', 'Cc06_g02510' => 'ccan', 'CDE02G1265' => 'cde', 'CDE05G0415' => 'cde', 'CDE08G1082' => 'cde', 'Cfa005780' => 'cfa', 'Cfa011522' => 'cfa', 'Cfa011523' => 'cfa', 'Cfa015627' => 'cfa', 'Cfa017359' => 'cfa', 'Ciclev10005687m.g' => 'ccl', 'Ciclev10012173m.g' => 'ccl', 'Ciclev10021621m.g' => 'ccl', 'Ciclev10028968m.g' => 'ccl', 'Ciclev10029907m.g' => 'ccl', 'CiPaw.01G164800' => 'cil', 'CiPaw.07G083700' => 'cil', 'CiPaw.07G127000' => 'cil', 'CiPaw.07G136900' => 'cil', 'CiPaw.08G081700' => 'cil', 'CiPaw.09G194600' => 'cil', 'CiPaw.10G146500' => 'cil', 'CiPaw.13G091500' => 'cil', 'CiPaw.13G091600' => 'cil', 'ClCG00G003390' => 'cla', 'ClCG01G007220' => 'cla', 'ClCG03G001370' => 'cla', 'ClCG04G008100' => 'cla', 'ClCG06G006110' => 'cla', 'ClCG06G006130' => 'cla', 'ClCG10G021210' => 'cla', 'COL.COLO4_07648' => 'col', 'COL.COLO4_07650' => 'col', 'COL.COLO4_07651' => 'col', 'COL.COLO4_14780' => 'col', 'COL.COLO4_18546' => 'col', 'COL.COLO4_18547' => 'col', 'COL.COLO4_23103' => 'col', 'COL.COLO4_30419' => 'col', 'COL.COLO4_34232' => 'col', 'Cpa.g.sc169.20' => 'cpa', 'Cpa.g.sc57.45' => 'cpa', 'Cpa.g.sc58.124' => 'cpa', 'Cpa.g.sc58.125' => 'cpa', 'Cpa.g.sc81.118' => 'cpa', 'Cpa.g.sc81.119' => 'cpa', 'Cre12.g524700' => 'cre', 'CsaV3_1G034430' => 'csa', 'CsaV3_1G034440' => 'csa', 'CsaV3_1G034450' => 'csa', 'CsaV3_3G034830' => 'csa', 'CsaV3_4G025090' => 'csa', 'CsaV3_5G018660' => 'csa', 'CsaV3_6G038160' => 'csa', 'CSS0003447' => 'camsi', 'CSS0017840' => 'camsi', 'CSS0019260' => 'camsi', 'CSS0040375' => 'camsi', 'CSS0042533' => 'camsi', 'DCAR_005960' => 'dca', 'DCAR_012104' => 'dca', 'DCAR_012105' => 'dca', 'DCAR_012293' => 'dca', 'DCAR_015632' => 'dca', 'DCAR_024602' => 'dca', 'DCAR_028752' => 'dca', 'Dinv06261' => 'din', 'Dinv13982' => 'din', 'Dinv17029' => 'din', 'Dinv18463' => 'din', 'Dinv33181' => 'din', 'Dinv35585' => 'din', 'Dinv37161' => 'din', 'Dinv42977' => 'din', 'Dinv43122' => 'din', 'Dinv44517' => 'din', 'Duzib093G0256' => 'dzi', 'Duzib106G1254' => 'dzi', 'Duzib128G1789' => 'dzi', 'Duzib133G0633' => 'dzi', 'Duzib138G0510' => 'dzi', 'Duzib150G1084' => 'dzi', 'Duzib168G0488' => 'dzi', 'Duzib168G1523' => 'dzi', 'Duzib170G0133' => 'dzi', 'ECA234G1433' => 'eca', 'ECA236G1432' => 'eca', 'ECA236G2256' => 'eca', 'ECA236G2365' => 'eca', 'ECA236G4830' => 'eca', 'ECA248G1505' => 'eca', 'EL10Ac3g06431' => 'bvu', 'EL10Ac5g12577' => 'bvu', 'EL10Ac6g13533' => 'bvu', 'EL10Ac7g16045' => 'bvu', 'Eucgr.A01281' => 'egr', 'Eucgr.B02326' => 'egr', 'Eucgr.H03532' => 'egr', 'Eucgr.K00553' => 'egr', 'Eucgr.K03116' => 'egr', 'FAN02G3963' => 'fan', 'FAN05G0438' => 'fan', 'FAN09G2434' => 'fan', 'FAN12G3984' => 'fan', 'FAN14G0798' => 'fan', 'FAN17G0652' => 'fan', 'FAN19G1988' => 'fan', 'FAN22G0632' => 'fan', 'FAN23G0387' => 'fan', 'FAN26G1323' => 'fan', 'FAN28G0666' => 'fan', 'FvH4_1g26080' => 'fve', 'FvH4_3g36780' => 'fve', 'FvH4_4g15270' => 'fve', 'FvH4_6g13490' => 'fve', 'Glyma.01G098700' => 'gma', 'Glyma.03G065900' => 'gma', 'Glyma.03G073754' => 'gma', 'Glyma.03G073758' => 'gma', 'Glyma.03G083200' => 'gma', 'Glyma.03G225500' => 'gma', 'Glyma.05G037766' => 'gma', 'Glyma.07G133500' => 'gma', 'Glyma.10G139400' => 'gma', 'Glyma.10G248900' => 'gma', 'Glyma.11G137800' => 'gma', 'Glyma.12G061300' => 'gma', 'Glyma.13G337900' => 'gma', 'Glyma.15G036600' => 'gma', 'Glyma.18G182800' => 'gma', 'Glyma.19G222500' => 'gma', 'Glyma.20G144800' => 'gma', 'Gohir.A01G222000' => 'ghi', 'Gohir.A03G044000' => 'ghi', 'Gohir.A03G044100' => 'ghi', 'Gohir.A04G083100' => 'ghi', 'Gohir.A07G127200' => 'ghi', 'Gohir.A07G132400' => 'ghi', 'Gohir.A08G000700' => 'ghi', 'Gohir.A11G327300' => 'ghi', 'Gohir.D01G211500' => 'ghi', 'Gohir.D03G123400' => 'ghi', 'Gohir.D03G123500' => 'ghi', 'Gohir.D04G121800' => 'ghi', 'Gohir.D07G131500' => 'ghi', 'Gohir.D07G136600' => 'ghi', 'Gohir.D08G011600' => 'ghi', 'Gohir.D11G346200' => 'ghi', 'Gorai.001G142800' => 'gra', 'Gorai.001G148700' => 'gra', 'Gorai.002G257300' => 'gra', 'Gorai.003G130000' => 'gra', 'Gorai.003G130100' => 'gra', 'Gorai.004G005300' => 'gra', 'Gorai.007G376500' => 'gra', 'Gorai.012G104700' => 'gra', 'GSVIVG01017946001' => 'vvi', 'GSVIVG01024928001' => 'vvi', 'GSVIVG01028227001' => 'vvi', 'GSVIVG01034151001' => 'vvi', 'HanXRQChr05g0135031' => 'han', 'HanXRQChr05g0135041' => 'han', 'HanXRQChr05g0140021' => 'han', 'HanXRQChr06g0178981' => 'han', 'HanXRQChr07g0188251' => 'han', 'HanXRQChr08g0235311' => 'han', 'HanXRQChr09g0271011' => 'han', 'HanXRQChr10g0293321' => 'han', 'HanXRQChr13g0388171' => 'han', 'Haze_00916' => 'cav', 'Haze_05063' => 'cav', 'Haze_20814' => 'cav', 'Haze_24128' => 'cav', 'Hma1.2p1_0745F.1_g212010' => 'hma', 'Hma1.2p1_0757F.1_g213260' => 'hma', 'Hma1.2p1_0936F.1_g238840' => 'hma', 'Hma1.2p1_1735F.1_g299890' => 'hma', 'Hma1.2p1_1861F.1_g305685' => 'hma', 'HPP92_003397' => 'vpl', 'HPP92_012597' => 'vpl', 'HPP92_015520' => 'vpl', 'HPP92_015539' => 'vpl', 'HPP92_020373' => 'vpl', 'Hund04938' => 'sun', 'Hund10677' => 'sun', 'Hund11033' => 'sun', 'Hund12155' => 'sun', 'Lalb_Chr01g0022551' => 'lal', 'Lalb_Chr03g0042341' => 'lal', 'Lalb_Chr07g0192931' => 'lal', 'Lalb_Chr12g0209551' => 'lal', 'Lalb_Chr19g0125251' => 'lal', 'Lalb_Chr19g0137891' => 'lal', 'Lalb_Chr21g0304641' => 'lal', 'Lalb_Chr21g0309881' => 'lal', 'Lj1A5T12' => 'lonja', 'Lj1C148G10' => 'lonja', 'Lj2A93T83' => 'lonja', 'Lj3A738G68' => 'lonja', 'Lj3C966T1' => 'lonja', 'Lj3g0018958' => 'lja', 'Lj3g0021831' => 'lja', 'Lj3g0025443' => 'lja', 'Lj4g0026809' => 'lja', 'Lj5g0012558' => 'lja', 'Lj5g0021586' => 'lja', 'Lsat_1_v5_gn_5_156840' => 'lsa', 'Lsat_1_v5_gn_8_73460' => 'lsa', 'Lsat_1_v5_gn_8_73481' => 'lsa', 'Lsat_1_v5_gn_9_31601' => 'lsa', 'Lsat_1_v5_gn_9_77320' => 'lsa', 'Manes.01G171300' => 'mes', 'Manes.01G171400' => 'mes', 'Manes.01G236100' => 'mes', 'Manes.02G130500' => 'mes', 'Manes.02G130600' => 'mes', 'Manes.03G180200' => 'mes', 'Manes.05G007000' => 'mes', 'Manes.08G084400' => 'mes', 'Manes.09G092600' => 'mes', 'Manes.15G027900' => 'mes', 'MBI04_g40948_MAGBIO' => 'mbi', 'MBI14_g12123_MAGBIO' => 'mbi', 'MBI18_g28915_MAGBIO' => 'mbi', 'MCO09G053' => 'mco', 'MCO11G782' => 'mco', 'MCO15G215' => 'mco', 'MD03G1088500' => 'mdo', 'MD03G1088600' => 'mdo', 'MD04G1130800' => 'mdo', 'MD09G1291700' => 'mdo', 'MD11G1097500' => 'mdo', 'MD11G1097600' => 'mdo', 'MD12G1143900' => 'mdo', 'MD13G1191400' => 'mdo', 'MD16G1191500' => 'mdo', 'Medtr1g085570' => 'mtr', 'Medtr1g104610' => 'mtr', 'Medtr2g097520' => 'mtr', 'Medtr4g021800' => 'mtr', 'Medtr4g021825' => 'mtr', 'Medtr4g064270' => 'mtr', 'Medtr4g064380' => 'mtr', 'Medtr7g062150' => 'mtr', 'MELO3C003138.2' => 'cme', 'MELO3C005187.2' => 'cme', 'MELO3C009252.2' => 'cme', 'MELO3C014481.2' => 'cme', 'MELO3C020616.2' => 'cme', 'MELO3C020617.2' => 'cme', 'MELO3C020618.2' => 'cme', 'Migut.G00328' => 'egut', 'Migut.J00320' => 'egut', 'Migut.L01000' => 'egut', 'Migut.L01953' => 'egut', 'MSTRG.10253' => 'ama', 'MSTRG.19077' => 'ama', 'MSTRG.26780' => 'ama', 'MSTRG.4023' => 'ama', 'MSTRG.5655' => 'ama', 'MSTRG.9992' => 'ama', 'Nitab4.5_0000043g0310' => 'nta', 'Nitab4.5_0000463g0080' => 'nta', 'Nitab4.5_0000705g0170' => 'nta', 'Nitab4.5_0001326g0060' => 'nta', 'Nitab4.5_0001628g0030' => 'nta', 'Nitab4.5_0002103g0110' => 'nta', 'Nitab4.5_0002946g0030' => 'nta', 'Nitab4.5_0004639g0030' => 'nta', 'Nn2g11149' => 'nnu', 'Nn2g13389' => 'nnu', 'Nn4g25326' => 'nnu', 'Nn4g26290' => 'nnu', 'Nn5g29865' => 'nnu', 'Oeu004163.1' => 'oeu', 'Oeu006901.1' => 'oeu', 'Oeu010096.1' => 'oeu', 'Oeu024340.1' => 'oeu', 'Oeu048369.1' => 'oeu', 'Os01g0973000' => 'osa', 'Os03g0273800' => 'osa', 'Os03g0701200' => 'osa', 'Os03g0834050' => 'osa', 'Os07g0634400' => 'osa', 'Peaxi162Scf00092g01414' => 'pax', 'Peaxi162Scf00165g00818' => 'pax', 'Peaxi162Scf00309g00516' => 'pax', 'Peaxi162Scf00774g00218' => 'pax', 'PGR004G1824' => 'pgr', 'PGR004G2606' => 'pgr', 'PGR031G2716' => 'pgr', 'PGR102G2460' => 'pgr', 'PGR142G2599' => 'pgr', 'PGSC0003DMG400000843' => 'stu', 'PGSC0003DMG400008829' => 'stu', 'PGSC0003DMG400030418' => 'stu', 'PGSC0003DMG400031834' => 'stu', 'PGSC0003DMG401028300' => 'stu', 'PGSC0003DMG402028300' => 'stu', 'Phvul.001G219300' => 'pvu', 'Phvul.007G056000' => 'pvu', 'Phvul.007G208000' => 'pvu', 'Phvul.008G119500' => 'pvu', 'Phvul.010G011200' => 'pvu', 'Phvul.010G014800' => 'pvu', 'Phvul.011G062900' => 'pvu', 'Phvul.L007043' => 'pvu', 'Potri.001G242300' => 'ptr', 'Potri.002G185300' => 'ptr', 'Potri.006G086900' => 'ptr', 'Potri.008G151700' => 'ptr', 'Potri.009G033500' => 'ptr', 'Potri.010G089300' => 'ptr', 'Potri.014G110800' => 'ptr', 'Pp3c27_8130' => 'ppa', 'Pp3c6_27410' => 'ppa', 'PRCOL_00001659' => 'pco', 'PRCOL_00001927' => 'pco', 'PRCOL_00003649' => 'pco', 'Prupe.1G011600' => 'ppe', 'Prupe.3G000800' => 'ppe', 'Prupe.3G001100' => 'ppe', 'Prupe.6G072700' => 'ppe', 'Prupe.6G072800' => 'ppe', 'Prupe.6G257300' => 'ppe', 'Prupe.8G033000' => 'ppe', 'Psat0s2633g0080' => 'psa', 'Psat0s3396g0080' => 'psa', 'Psat0s3396g0200' => 'psa', 'Psat3g139080' => 'psa', 'Psat5g285080' => 'psa', 'Psat6g157760' => 'psa', 'Psat6g208440' => 'psa', 'Psat7g215320' => 'psa', 'Psat7g215400' => 'psa', 'Psat7g235600' => 'psa', 'Psat7g235760' => 'psa', 'PSO063G4603' => 'pso', 'PSO210G0182' => 'pso', 'PSO210G0196' => 'pso', 'PSO339G0394' => 'pso', 'PSO339G4127' => 'pso', 'PSO513G0064' => 'pso', 'PSO761G0079' => 'pso', 'QL01p031003' => 'qlo', 'QL01p031078' => 'qlo', 'QL06p003004' => 'qlo', 'QL07p048731' => 'qlo', 'QL09p037427' => 'qlo', 'RcHm_v2.0_Chr3g0466361' => 'rch', 'RcHm_v2.0_Chr3g0485571' => 'rch', 'RcHm_v2.0_Chr4g0416551' => 'rch', 'RcHm_v2.0_Chr5g0065831' => 'rch', 'Rhsim01G0230500' => 'rsi', 'Rhsim05G0194000' => 'rsi', 'Rhsim08G0250400' => 'rsi', 'Sabra02G0131000' => 'sbr', 'Sabra06G0066300' => 'sbr', 'Sabra08G0115500' => 'sbr', 'Sabra09G0023900' => 'sbr', 'Sabra10G0054000' => 'sbr', 'Sabra14G0081500' => 'sbr', 'Sabra16G0147100' => 'sbr', 'SalBow2G2957' => 'sbo', 'SalBow4G3320' => 'sbo', 'SalBow8G1894' => 'sbo', 'Sc07g0007950' => 'sci', 'Sc12g0001360' => 'sci', 'Sc13g0004330' => 'sci', 'Sc20g0005010' => 'sci', 'Sed0000361' => 'sed', 'Sed0001706' => 'sed', 'Sed0002422' => 'sed', 'Sed0004029' => 'sed', 'Sed0004602' => 'sed', 'Sed0004943' => 'sed', 'Sed0008646' => 'sed', 'Sed0023313' => 'sed', 'Sed0024843' => 'sed', 'SEGI_00081' => 'sgi', 'SEGI_00947' => 'sgi', 'SEGI_04046' => 'sgi', 'SEGI_06880' => 'sgi', 'SEGI_09736' => 'sgi', 'SEGI_12741' => 'sgi', 'SEGI_14530' => 'sgi', 'SEGI_20705' => 'sgi', 'SEGI_26088' => 'sgi', 'SEGI_28323' => 'sgi', 'SEGI_33343' => 'sgi', 'SGA_v2.0_scaffold126G33775' => 'sas', 'SGA_v2.0_scaffold2G01337' => 'sas', 'SGA_v2.0_scaffold38G15006' => 'sas', 'SGA_v2.0_scaffold39G15264' => 'sas', 'SGA_v2.0_scaffold453G51880' => 'sas', 'SHI12696' => 'shi', 'SMO367G1096' => 'smo', 'Solyc01g068630.3' => 'sly', 'Solyc05g011880.3' => 'sly', 'Solyc06g076300.3' => 'sly', 'Solyc09g010940.4' => 'sly', 'Solyc09g075890.3' => 'sly', 'Sopen01g030560' => 'spe', 'Sopen05g006630' => 'spe', 'Sopen06g032720' => 'spe', 'Sopen09g005660' => 'spe', 'Sopen09g030690' => 'spe', 'Sp4g14540' => 'spa', 'Sp4g20030' => 'spa', 'Sp5g01320' => 'spa', 'Sp6g21170' => 'spa', 'Sp6g21180' => 'spa', 'Sp6g21190' => 'spa', 'Sp6g40220' => 'spa', 'TAR362G0122' => 'tar', 'TAR362G1338' => 'tar', 'TAR369G0590' => 'tar', 'TAR371G0824' => 'tar', 'TAR622G1429' => 'tar', 'TAR623G0734' => 'tar', 'TAR625G0441' => 'tar', 'TAR629G0976' => 'tar', 'TAR633G1195' => 'tar', 'TAR636G2660' => 'tar', 'THA.LOC104799440' => 'tha', 'THA.LOC104800966' => 'tha', 'THA.LOC104806559' => 'tha', 'THA.LOC104810765' => 'tha', 'THA.LOC104816266' => 'tha', 'THA.LOC104817419' => 'tha', 'THA.LOC104827021' => 'tha', 'Thecc.01G327400' => 'tca', 'Thecc.04G229200' => 'tca', 'Thecc.05G037400' => 'tca', 'Thecc.09G318600' => 'tca', 'Thecc.09G318700' => 'tca', 'Thhalv10006238m.g' => 'esa', 'Thhalv10014321m.g' => 'esa', 'Thhalv10014335m.g' => 'esa', 'Thhalv10015826m.g' => 'esa', 'Thhalv10017107m.g' => 'esa', 'Thhalv10017180m.g' => 'esa', 'Thhalv10029339m.g' => 'esa', 'TPR.G1699' => 'tpr', 'TPR.G23609' => 'tpr', 'TPR.G3081' => 'tpr', 'TPR.G40397' => 'tpr', 'TPR.G5522' => 'tpr', 'TPR.G5618' => 'tpr', 'TPR.G5626' => 'tpr', 'TWI09G1632' => 'twi', 'TWI23G1230' => 'twi', 'TWI53G1064' => 'twi', 'TWI59G0751' => 'twi', 'TWI74G0947' => 'twi', 'TWI77G0337' => 'twi', 'TWI79G1254' => 'twi', 'unitig_0.g2341' => 'ugi', 'unitig_26.g10006' => 'ugi', 'unitig_26.g10008' => 'ugi', 'unitig_26.g9192' => 'ugi', 'vmacro14547' => 'vma', 'vmacro15333' => 'vma', 'vmacro18743' => 'vma', 'vmacro20166' => 'vma', 'VMungo0331G0523' => 'vmu', 'VMungo0331G1202' => 'vmu', 'VMungo0720G1228' => 'vmu', 'VMungo0720G1514' => 'vmu', 'VMungo1080G0169' => 'vmu', 'VMungo1127G1475' => 'vmu', 'VMungo1383G1208' => 'vmu', 'VMungo1383G1698' => 'vmu', 'Zm00001eb012270' => 'zma', 'Zm00001eb054100' => 'zma', 'Zm00001eb063350' => 'zma', 'Zm00001eb328560' => 'zma', 'Zm00001eb342820' => 'zma', 'Zm00001eb362210' => 'zma', 'Zm00001eb397730' => 'zma', 'Zm00001eb399750' => 'zma' ) $gf_id = 'HOM05D000959' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000959' ) $data_identifier = 'HOM05D000959' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 5, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 5, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 10, 'mbi' => (int) 3, 'mco' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 2, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 3, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 11, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399750' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000959', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '622', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p07100' => 'bna', 'A03p11720' => 'bna', 'A05p08300' => 'bna', 'A05p13380' => 'bna', 'A09p54130' => 'bna', 'A10p16690' => 'bna', 'A10p16700' => 'bna', 'A10p33390' => 'bna', 'Aa31LG10G16020' => 'aar', 'Aa31LG1G11810' => 'aar', 'Aa31LG1G11830' => 'aar', 'Aa31LG1G22510' => 'aar', 'Aa31LG5G4890' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5793' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2310' => 'aag', 'Actinidia08499' => 'ach', 'Actinidia11262' => 'ach', 'Actinidia23926' => 'ach', 'Actinidia34420' => 'ach', 'Actinidia36970' => 'ach', 'Ah.02g111220' => 'amhyb', 'Ah.15g097750' => 'amhyb', 'AL4G27500' => 'aly', 'AL6G11470' => 'aly', 'AL8G35950' => 'aly', 'AL8G35960' => 'aly', 'AL8G35970' => 'aly', 'Aqoxy1G00912' => 'aox', 'Aqoxy2G02253' => 'aox', 'Aqoxy2G02411' => 'aox', 'Aqoxy5G00485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BZ66YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K8ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM4FUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6BF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HFV7XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25JBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0YNNV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MAKK6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P70IT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP2Z6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V61LZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YWP64R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3S9AI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7PGHH' => 'arhy', 'AT2G32150' => 'ath', 'AT3G62040' => 'ath', 'AT5G02230' => 'ath', 'AT5G59480' => 'ath', 'AT5G59490' => 'ath', 'ATR0332G060' => 'atr', 'ATR0559G190' => 'atr', 'ATR0693G294' => 'atr', 'Atru.chr3.3975' => 'acertr', 'Atru.chr3.3976' => 'acertr', 'Atru.chr3.3977' => 'acertr', 'Atru.chr4.2498' => 'acertr', 'Atru.chr5.838' => 'acertr', 'Atru.chr8.1990' => 'acertr', 'Atru.chr8.1991' => 'acertr', 'Atru.chr8.1992' => 'acertr', 'AUR62001759' => 'cqu', 'AUR62009545' => 'cqu', 'AUR62010474' => 'cqu', 'AUR62025820' => 'cqu', 'AUR62030422' => 'cqu', 'AUR62033605' => 'cqu', 'AUR62038615' => 'cqu', 'AUR62041347' => 'cqu', 'BcaB01g04574' => 'bca', 'BcaB02g09263' => 'bca', 'BcaB02g10453' => 'bca', 'BcaB05g22513' => 'bca', 'BcaB08g36253' => 'bca', 'BcaB08g36254' => 'bca', 'BcaC01g06519' => 'bca', 'BcaC02g11889' => 'bca', 'BcaC03g14010' => 'bca', 'BcaC03g18439' => 'bca', 'BcaC04g19765' => 'bca', 'BcaC09g48432' => 'bca', 'BcaNung07302' => 'bca', 'BolC2t06040H' => 'bol', 'BolC2t07346H' => 'bol', 'BolC3t13817H' => 'bol', 'BolC4t22625H' => 'bol', 'BolC4t23297H' => 'bol', 'BolC8t51278H' => 'bol', 'BolC9t58050H' => 'bol', 'BolC9t58051H' => 'bol', 'BolC9t60163H' => 'bol', 'BraA02t04712Z' => 'bra', 'BraA02t05791Z' => 'bra', 'BraA03t10483Z' => 'bra', 'BraA05t19795Z' => 'bra', 'BraA05t20276Z' => 'bra', 'BraA09t40827Z' => 'bra', 'BraA10t43750Z' => 'bra', 'BraA10t43751Z' => 'bra', 'BraA10t45370Z' => 'bra', 'C02p00400' => 'bna', 'C02p12460' => 'bna', 'C03p13680' => 'bna', 'C04p10270' => 'bna', 'C04p17500' => 'bna', 'C08p37010' => 'bna', 'C09p51880' => 'bna', 'C09p51890' => 'bna', 'C09p74300' => 'bna', 'CAN.G179.26' => 'can', 'CAN.G3384.1' => 'can', 'CAN.G394.68' => 'can', 'CAN.G907.13' => 'can', 'CANSAT11G0012' => 'cansat', 'CANSAT25G1586' => 'cansat', 'CANSAT35G0735' => 'cansat', 'CANSAT54G0556' => 'cansat', 'CANSAT64G0356' => 'cansat', 'CANSAT78G2042' => 'cansat', 'CARHR125920' => 'chi', 'CARHR131910' => 'chi', 'CARHR172390' => 'chi', 'CARHR211140' => 'chi', 'CARHR285850' => 'chi', 'CARHR285860' => 'chi', 'Carub.0004s1347' => 'cru', 'Carub.0004s1960' => 'cru', 'Carub.0005s2880' => 'cru', 'Carub.0006s0107' => 'cru', 'Carub.0008s2015' => 'cru', 'Carub.0008s2016' => 'cru', 'Carub.0008s2017' => 'cru', 'Ca_01315_v3' => 'car', 'Ca_05063_v3' => 'car', 'Ca_10231_v3' => 'car', 'Ca_10913_v3' => 'car', 'Ca_19156_v3' => 'car', 'Ca_23644_v3' => 'car', 'Ca_26735_v3' => 'car', 'Cc01_g13130' => 'ccan', 'Cc02_g21690' => 'ccan', 'Cc03_g03600' => 'ccan', 'Cc06_g02510' => 'ccan', 'CDE02G1265' => 'cde', 'CDE05G0415' => 'cde', 'CDE08G1082' => 'cde', 'Cfa005780' => 'cfa', 'Cfa011522' => 'cfa', 'Cfa011523' => 'cfa', 'Cfa015627' => 'cfa', 'Cfa017359' => 'cfa', 'Ciclev10005687m.g' => 'ccl', 'Ciclev10012173m.g' => 'ccl', 'Ciclev10021621m.g' => 'ccl', 'Ciclev10028968m.g' => 'ccl', 'Ciclev10029907m.g' => 'ccl', 'CiPaw.01G164800' => 'cil', 'CiPaw.07G083700' => 'cil', 'CiPaw.07G127000' => 'cil', 'CiPaw.07G136900' => 'cil', 'CiPaw.08G081700' => 'cil', 'CiPaw.09G194600' => 'cil', 'CiPaw.10G146500' => 'cil', 'CiPaw.13G091500' => 'cil', 'CiPaw.13G091600' => 'cil', 'ClCG00G003390' => 'cla', 'ClCG01G007220' => 'cla', 'ClCG03G001370' => 'cla', 'ClCG04G008100' => 'cla', 'ClCG06G006110' => 'cla', 'ClCG06G006130' => 'cla', 'ClCG10G021210' => 'cla', 'COL.COLO4_07648' => 'col', 'COL.COLO4_07650' => 'col', 'COL.COLO4_07651' => 'col', 'COL.COLO4_14780' => 'col', 'COL.COLO4_18546' => 'col', 'COL.COLO4_18547' => 'col', 'COL.COLO4_23103' => 'col', 'COL.COLO4_30419' => 'col', 'COL.COLO4_34232' => 'col', 'Cpa.g.sc169.20' => 'cpa', 'Cpa.g.sc57.45' => 'cpa', 'Cpa.g.sc58.124' => 'cpa', 'Cpa.g.sc58.125' => 'cpa', 'Cpa.g.sc81.118' => 'cpa', 'Cpa.g.sc81.119' => 'cpa', 'Cre12.g524700' => 'cre', 'CsaV3_1G034430' => 'csa', 'CsaV3_1G034440' => 'csa', 'CsaV3_1G034450' => 'csa', 'CsaV3_3G034830' => 'csa', 'CsaV3_4G025090' => 'csa', 'CsaV3_5G018660' => 'csa', 'CsaV3_6G038160' => 'csa', 'CSS0003447' => 'camsi', 'CSS0017840' => 'camsi', 'CSS0019260' => 'camsi', 'CSS0040375' => 'camsi', 'CSS0042533' => 'camsi', 'DCAR_005960' => 'dca', 'DCAR_012104' => 'dca', 'DCAR_012105' => 'dca', 'DCAR_012293' => 'dca', 'DCAR_015632' => 'dca', 'DCAR_024602' => 'dca', 'DCAR_028752' => 'dca', 'Dinv06261' => 'din', 'Dinv13982' => 'din', 'Dinv17029' => 'din', 'Dinv18463' => 'din', 'Dinv33181' => 'din', 'Dinv35585' => 'din', 'Dinv37161' => 'din', 'Dinv42977' => 'din', 'Dinv43122' => 'din', 'Dinv44517' => 'din', 'Duzib093G0256' => 'dzi', 'Duzib106G1254' => 'dzi', 'Duzib128G1789' => 'dzi', 'Duzib133G0633' => 'dzi', 'Duzib138G0510' => 'dzi', 'Duzib150G1084' => 'dzi', 'Duzib168G0488' => 'dzi', 'Duzib168G1523' => 'dzi', 'Duzib170G0133' => 'dzi', 'ECA234G1433' => 'eca', 'ECA236G1432' => 'eca', 'ECA236G2256' => 'eca', 'ECA236G2365' => 'eca', 'ECA236G4830' => 'eca', 'ECA248G1505' => 'eca', 'EL10Ac3g06431' => 'bvu', 'EL10Ac5g12577' => 'bvu', 'EL10Ac6g13533' => 'bvu', 'EL10Ac7g16045' => 'bvu', 'Eucgr.A01281' => 'egr', 'Eucgr.B02326' => 'egr', 'Eucgr.H03532' => 'egr', 'Eucgr.K00553' => 'egr', 'Eucgr.K03116' => 'egr', 'FAN02G3963' => 'fan', 'FAN05G0438' => 'fan', 'FAN09G2434' => 'fan', 'FAN12G3984' => 'fan', 'FAN14G0798' => 'fan', 'FAN17G0652' => 'fan', 'FAN19G1988' => 'fan', 'FAN22G0632' => 'fan', 'FAN23G0387' => 'fan', 'FAN26G1323' => 'fan', 'FAN28G0666' => 'fan', 'FvH4_1g26080' => 'fve', 'FvH4_3g36780' => 'fve', 'FvH4_4g15270' => 'fve', 'FvH4_6g13490' => 'fve', 'Glyma.01G098700' => 'gma', 'Glyma.03G065900' => 'gma', 'Glyma.03G073754' => 'gma', 'Glyma.03G073758' => 'gma', 'Glyma.03G083200' => 'gma', 'Glyma.03G225500' => 'gma', 'Glyma.05G037766' => 'gma', 'Glyma.07G133500' => 'gma', 'Glyma.10G139400' => 'gma', 'Glyma.10G248900' => 'gma', 'Glyma.11G137800' => 'gma', 'Glyma.12G061300' => 'gma', 'Glyma.13G337900' => 'gma', 'Glyma.15G036600' => 'gma', 'Glyma.18G182800' => 'gma', 'Glyma.19G222500' => 'gma', 'Glyma.20G144800' => 'gma', 'Gohir.A01G222000' => 'ghi', 'Gohir.A03G044000' => 'ghi', 'Gohir.A03G044100' => 'ghi', 'Gohir.A04G083100' => 'ghi', 'Gohir.A07G127200' => 'ghi', 'Gohir.A07G132400' => 'ghi', 'Gohir.A08G000700' => 'ghi', 'Gohir.A11G327300' => 'ghi', 'Gohir.D01G211500' => 'ghi', 'Gohir.D03G123400' => 'ghi', 'Gohir.D03G123500' => 'ghi', 'Gohir.D04G121800' => 'ghi', 'Gohir.D07G131500' => 'ghi', 'Gohir.D07G136600' => 'ghi', 'Gohir.D08G011600' => 'ghi', 'Gohir.D11G346200' => 'ghi', 'Gorai.001G142800' => 'gra', 'Gorai.001G148700' => 'gra', 'Gorai.002G257300' => 'gra', 'Gorai.003G130000' => 'gra', 'Gorai.003G130100' => 'gra', 'Gorai.004G005300' => 'gra', 'Gorai.007G376500' => 'gra', 'Gorai.012G104700' => 'gra', 'GSVIVG01017946001' => 'vvi', 'GSVIVG01024928001' => 'vvi', 'GSVIVG01028227001' => 'vvi', 'GSVIVG01034151001' => 'vvi', 'HanXRQChr05g0135031' => 'han', 'HanXRQChr05g0135041' => 'han', 'HanXRQChr05g0140021' => 'han', 'HanXRQChr06g0178981' => 'han', 'HanXRQChr07g0188251' => 'han', 'HanXRQChr08g0235311' => 'han', 'HanXRQChr09g0271011' => 'han', 'HanXRQChr10g0293321' => 'han', 'HanXRQChr13g0388171' => 'han', 'Haze_00916' => 'cav', 'Haze_05063' => 'cav', 'Haze_20814' => 'cav', 'Haze_24128' => 'cav', 'Hma1.2p1_0745F.1_g212010' => 'hma', 'Hma1.2p1_0757F.1_g213260' => 'hma', 'Hma1.2p1_0936F.1_g238840' => 'hma', 'Hma1.2p1_1735F.1_g299890' => 'hma', 'Hma1.2p1_1861F.1_g305685' => 'hma', 'HPP92_003397' => 'vpl', 'HPP92_012597' => 'vpl', 'HPP92_015520' => 'vpl', 'HPP92_015539' => 'vpl', 'HPP92_020373' => 'vpl', 'Hund04938' => 'sun', 'Hund10677' => 'sun', 'Hund11033' => 'sun', 'Hund12155' => 'sun', 'Lalb_Chr01g0022551' => 'lal', 'Lalb_Chr03g0042341' => 'lal', 'Lalb_Chr07g0192931' => 'lal', 'Lalb_Chr12g0209551' => 'lal', 'Lalb_Chr19g0125251' => 'lal', 'Lalb_Chr19g0137891' => 'lal', 'Lalb_Chr21g0304641' => 'lal', 'Lalb_Chr21g0309881' => 'lal', 'Lj1A5T12' => 'lonja', 'Lj1C148G10' => 'lonja', 'Lj2A93T83' => 'lonja', 'Lj3A738G68' => 'lonja', 'Lj3C966T1' => 'lonja', 'Lj3g0018958' => 'lja', 'Lj3g0021831' => 'lja', 'Lj3g0025443' => 'lja', 'Lj4g0026809' => 'lja', 'Lj5g0012558' => 'lja', 'Lj5g0021586' => 'lja', 'Lsat_1_v5_gn_5_156840' => 'lsa', 'Lsat_1_v5_gn_8_73460' => 'lsa', 'Lsat_1_v5_gn_8_73481' => 'lsa', 'Lsat_1_v5_gn_9_31601' => 'lsa', 'Lsat_1_v5_gn_9_77320' => 'lsa', 'Manes.01G171300' => 'mes', 'Manes.01G171400' => 'mes', 'Manes.01G236100' => 'mes', 'Manes.02G130500' => 'mes', 'Manes.02G130600' => 'mes', 'Manes.03G180200' => 'mes', 'Manes.05G007000' => 'mes', 'Manes.08G084400' => 'mes', 'Manes.09G092600' => 'mes', 'Manes.15G027900' => 'mes', 'MBI04_g40948_MAGBIO' => 'mbi', 'MBI14_g12123_MAGBIO' => 'mbi', 'MBI18_g28915_MAGBIO' => 'mbi', 'MCO09G053' => 'mco', 'MCO11G782' => 'mco', 'MCO15G215' => 'mco', 'MD03G1088500' => 'mdo', 'MD03G1088600' => 'mdo', 'MD04G1130800' => 'mdo', 'MD09G1291700' => 'mdo', 'MD11G1097500' => 'mdo', 'MD11G1097600' => 'mdo', 'MD12G1143900' => 'mdo', 'MD13G1191400' => 'mdo', 'MD16G1191500' => 'mdo', 'Medtr1g085570' => 'mtr', 'Medtr1g104610' => 'mtr', 'Medtr2g097520' => 'mtr', 'Medtr4g021800' => 'mtr', 'Medtr4g021825' => 'mtr', 'Medtr4g064270' => 'mtr', 'Medtr4g064380' => 'mtr', 'Medtr7g062150' => 'mtr', 'MELO3C003138.2' => 'cme', 'MELO3C005187.2' => 'cme', 'MELO3C009252.2' => 'cme', 'MELO3C014481.2' => 'cme', 'MELO3C020616.2' => 'cme', 'MELO3C020617.2' => 'cme', 'MELO3C020618.2' => 'cme', 'Migut.G00328' => 'egut', 'Migut.J00320' => 'egut', 'Migut.L01000' => 'egut', 'Migut.L01953' => 'egut', 'MSTRG.10253' => 'ama', 'MSTRG.19077' => 'ama', 'MSTRG.26780' => 'ama', 'MSTRG.4023' => 'ama', 'MSTRG.5655' => 'ama', 'MSTRG.9992' => 'ama', 'Nitab4.5_0000043g0310' => 'nta', 'Nitab4.5_0000463g0080' => 'nta', 'Nitab4.5_0000705g0170' => 'nta', 'Nitab4.5_0001326g0060' => 'nta', 'Nitab4.5_0001628g0030' => 'nta', 'Nitab4.5_0002103g0110' => 'nta', 'Nitab4.5_0002946g0030' => 'nta', 'Nitab4.5_0004639g0030' => 'nta', 'Nn2g11149' => 'nnu', 'Nn2g13389' => 'nnu', 'Nn4g25326' => 'nnu', 'Nn4g26290' => 'nnu', 'Nn5g29865' => 'nnu', 'Oeu004163.1' => 'oeu', 'Oeu006901.1' => 'oeu', 'Oeu010096.1' => 'oeu', 'Oeu024340.1' => 'oeu', 'Oeu048369.1' => 'oeu', 'Os01g0973000' => 'osa', 'Os03g0273800' => 'osa', 'Os03g0701200' => 'osa', 'Os03g0834050' => 'osa', 'Os07g0634400' => 'osa', 'Peaxi162Scf00092g01414' => 'pax', 'Peaxi162Scf00165g00818' => 'pax', 'Peaxi162Scf00309g00516' => 'pax', 'Peaxi162Scf00774g00218' => 'pax', 'PGR004G1824' => 'pgr', 'PGR004G2606' => 'pgr', 'PGR031G2716' => 'pgr', 'PGR102G2460' => 'pgr', 'PGR142G2599' => 'pgr', 'PGSC0003DMG400000843' => 'stu', 'PGSC0003DMG400008829' => 'stu', 'PGSC0003DMG400030418' => 'stu', 'PGSC0003DMG400031834' => 'stu', 'PGSC0003DMG401028300' => 'stu', 'PGSC0003DMG402028300' => 'stu', 'Phvul.001G219300' => 'pvu', 'Phvul.007G056000' => 'pvu', 'Phvul.007G208000' => 'pvu', 'Phvul.008G119500' => 'pvu', 'Phvul.010G011200' => 'pvu', 'Phvul.010G014800' => 'pvu', 'Phvul.011G062900' => 'pvu', 'Phvul.L007043' => 'pvu', 'Potri.001G242300' => 'ptr', 'Potri.002G185300' => 'ptr', 'Potri.006G086900' => 'ptr', 'Potri.008G151700' => 'ptr', 'Potri.009G033500' => 'ptr', 'Potri.010G089300' => 'ptr', 'Potri.014G110800' => 'ptr', 'Pp3c27_8130' => 'ppa', 'Pp3c6_27410' => 'ppa', 'PRCOL_00001659' => 'pco', 'PRCOL_00001927' => 'pco', 'PRCOL_00003649' => 'pco', 'Prupe.1G011600' => 'ppe', 'Prupe.3G000800' => 'ppe', 'Prupe.3G001100' => 'ppe', 'Prupe.6G072700' => 'ppe', 'Prupe.6G072800' => 'ppe', 'Prupe.6G257300' => 'ppe', 'Prupe.8G033000' => 'ppe', 'Psat0s2633g0080' => 'psa', 'Psat0s3396g0080' => 'psa', 'Psat0s3396g0200' => 'psa', 'Psat3g139080' => 'psa', 'Psat5g285080' => 'psa', 'Psat6g157760' => 'psa', 'Psat6g208440' => 'psa', 'Psat7g215320' => 'psa', 'Psat7g215400' => 'psa', 'Psat7g235600' => 'psa', 'Psat7g235760' => 'psa', 'PSO063G4603' => 'pso', 'PSO210G0182' => 'pso', 'PSO210G0196' => 'pso', 'PSO339G0394' => 'pso', 'PSO339G4127' => 'pso', 'PSO513G0064' => 'pso', 'PSO761G0079' => 'pso', 'QL01p031003' => 'qlo', 'QL01p031078' => 'qlo', 'QL06p003004' => 'qlo', 'QL07p048731' => 'qlo', 'QL09p037427' => 'qlo', 'RcHm_v2.0_Chr3g0466361' => 'rch', 'RcHm_v2.0_Chr3g0485571' => 'rch', 'RcHm_v2.0_Chr4g0416551' => 'rch', 'RcHm_v2.0_Chr5g0065831' => 'rch', 'Rhsim01G0230500' => 'rsi', 'Rhsim05G0194000' => 'rsi', 'Rhsim08G0250400' => 'rsi', 'Sabra02G0131000' => 'sbr', 'Sabra06G0066300' => 'sbr', 'Sabra08G0115500' => 'sbr', 'Sabra09G0023900' => 'sbr', 'Sabra10G0054000' => 'sbr', 'Sabra14G0081500' => 'sbr', 'Sabra16G0147100' => 'sbr', 'SalBow2G2957' => 'sbo', 'SalBow4G3320' => 'sbo', 'SalBow8G1894' => 'sbo', 'Sc07g0007950' => 'sci', 'Sc12g0001360' => 'sci', 'Sc13g0004330' => 'sci', 'Sc20g0005010' => 'sci', 'Sed0000361' => 'sed', 'Sed0001706' => 'sed', 'Sed0002422' => 'sed', 'Sed0004029' => 'sed', 'Sed0004602' => 'sed', 'Sed0004943' => 'sed', 'Sed0008646' => 'sed', 'Sed0023313' => 'sed', 'Sed0024843' => 'sed', 'SEGI_00081' => 'sgi', 'SEGI_00947' => 'sgi', 'SEGI_04046' => 'sgi', 'SEGI_06880' => 'sgi', 'SEGI_09736' => 'sgi', 'SEGI_12741' => 'sgi', 'SEGI_14530' => 'sgi', 'SEGI_20705' => 'sgi', 'SEGI_26088' => 'sgi', 'SEGI_28323' => 'sgi', 'SEGI_33343' => 'sgi', 'SGA_v2.0_scaffold126G33775' => 'sas', 'SGA_v2.0_scaffold2G01337' => 'sas', 'SGA_v2.0_scaffold38G15006' => 'sas', 'SGA_v2.0_scaffold39G15264' => 'sas', 'SGA_v2.0_scaffold453G51880' => 'sas', 'SHI12696' => 'shi', 'SMO367G1096' => 'smo', 'Solyc01g068630.3' => 'sly', 'Solyc05g011880.3' => 'sly', 'Solyc06g076300.3' => 'sly', 'Solyc09g010940.4' => 'sly', 'Solyc09g075890.3' => 'sly', 'Sopen01g030560' => 'spe', 'Sopen05g006630' => 'spe', 'Sopen06g032720' => 'spe', 'Sopen09g005660' => 'spe', 'Sopen09g030690' => 'spe', 'Sp4g14540' => 'spa', 'Sp4g20030' => 'spa', 'Sp5g01320' => 'spa', 'Sp6g21170' => 'spa', 'Sp6g21180' => 'spa', 'Sp6g21190' => 'spa', 'Sp6g40220' => 'spa', 'TAR362G0122' => 'tar', 'TAR362G1338' => 'tar', 'TAR369G0590' => 'tar', 'TAR371G0824' => 'tar', 'TAR622G1429' => 'tar', 'TAR623G0734' => 'tar', 'TAR625G0441' => 'tar', 'TAR629G0976' => 'tar', 'TAR633G1195' => 'tar', 'TAR636G2660' => 'tar', 'THA.LOC104799440' => 'tha', 'THA.LOC104800966' => 'tha', 'THA.LOC104806559' => 'tha', 'THA.LOC104810765' => 'tha', 'THA.LOC104816266' => 'tha', 'THA.LOC104817419' => 'tha', 'THA.LOC104827021' => 'tha', 'Thecc.01G327400' => 'tca', 'Thecc.04G229200' => 'tca', 'Thecc.05G037400' => 'tca', 'Thecc.09G318600' => 'tca', 'Thecc.09G318700' => 'tca', 'Thhalv10006238m.g' => 'esa', 'Thhalv10014321m.g' => 'esa', 'Thhalv10014335m.g' => 'esa', 'Thhalv10015826m.g' => 'esa', 'Thhalv10017107m.g' => 'esa', 'Thhalv10017180m.g' => 'esa', 'Thhalv10029339m.g' => 'esa', 'TPR.G1699' => 'tpr', 'TPR.G23609' => 'tpr', 'TPR.G3081' => 'tpr', 'TPR.G40397' => 'tpr', 'TPR.G5522' => 'tpr', 'TPR.G5618' => 'tpr', 'TPR.G5626' => 'tpr', 'TWI09G1632' => 'twi', 'TWI23G1230' => 'twi', 'TWI53G1064' => 'twi', 'TWI59G0751' => 'twi', 'TWI74G0947' => 'twi', 'TWI77G0337' => 'twi', 'TWI79G1254' => 'twi', 'unitig_0.g2341' => 'ugi', 'unitig_26.g10006' => 'ugi', 'unitig_26.g10008' => 'ugi', 'unitig_26.g9192' => 'ugi', 'vmacro14547' => 'vma', 'vmacro15333' => 'vma', 'vmacro18743' => 'vma', 'vmacro20166' => 'vma', 'VMungo0331G0523' => 'vmu', 'VMungo0331G1202' => 'vmu', 'VMungo0720G1228' => 'vmu', 'VMungo0720G1514' => 'vmu', 'VMungo1080G0169' => 'vmu', 'VMungo1127G1475' => 'vmu', 'VMungo1383G1208' => 'vmu', 'VMungo1383G1698' => 'vmu', 'Zm00001eb012270' => 'zma', 'Zm00001eb054100' => 'zma', 'Zm00001eb063350' => 'zma', 'Zm00001eb328560' => 'zma', 'Zm00001eb342820' => 'zma', 'Zm00001eb362210' => 'zma', 'Zm00001eb397730' => 'zma', 'Zm00001eb399750' => 'zma' ), 'gf_id' => 'HOM05D000959', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000959' ), 'data_identifier' => 'HOM05D000959', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000959', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '622', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p07100' => 'bna', 'A03p11720' => 'bna', 'A05p08300' => 'bna', 'A05p13380' => 'bna', 'A09p54130' => 'bna', 'A10p16690' => 'bna', 'A10p16700' => 'bna', 'A10p33390' => 'bna', 'Aa31LG10G16020' => 'aar', 'Aa31LG1G11810' => 'aar', 'Aa31LG1G11830' => 'aar', 'Aa31LG1G22510' => 'aar', 'Aa31LG5G4890' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5793' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2310' => 'aag', 'Actinidia08499' => 'ach', 'Actinidia11262' => 'ach', 'Actinidia23926' => 'ach', 'Actinidia34420' => 'ach', 'Actinidia36970' => 'ach', 'Ah.02g111220' => 'amhyb', 'Ah.15g097750' => 'amhyb', 'AL4G27500' => 'aly', 'AL6G11470' => 'aly', 'AL8G35950' => 'aly', 'AL8G35960' => 'aly', 'AL8G35970' => 'aly', 'Aqoxy1G00912' => 'aox', 'Aqoxy2G02253' => 'aox', 'Aqoxy2G02411' => 'aox', 'Aqoxy5G00485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BZ66YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K8ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM4FUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6BF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HFV7XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25JBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0YNNV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MAKK6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P70IT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP2Z6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V61LZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YWP64R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3S9AI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7PGHH' => 'arhy', 'AT2G32150' => 'ath', 'AT3G62040' => 'ath', 'AT5G02230' => 'ath', 'AT5G59480' => 'ath', 'AT5G59490' => 'ath', 'ATR0332G060' => 'atr', 'ATR0559G190' => 'atr', 'ATR0693G294' => 'atr', 'Atru.chr3.3975' => 'acertr', 'Atru.chr3.3976' => 'acertr', 'Atru.chr3.3977' => 'acertr', 'Atru.chr4.2498' => 'acertr', 'Atru.chr5.838' => 'acertr', 'Atru.chr8.1990' => 'acertr', 'Atru.chr8.1991' => 'acertr', 'Atru.chr8.1992' => 'acertr', 'AUR62001759' => 'cqu', 'AUR62009545' => 'cqu', 'AUR62010474' => 'cqu', 'AUR62025820' => 'cqu', 'AUR62030422' => 'cqu', 'AUR62033605' => 'cqu', 'AUR62038615' => 'cqu', 'AUR62041347' => 'cqu', 'BcaB01g04574' => 'bca', 'BcaB02g09263' => 'bca', 'BcaB02g10453' => 'bca', 'BcaB05g22513' => 'bca', 'BcaB08g36253' => 'bca', 'BcaB08g36254' => 'bca', 'BcaC01g06519' => 'bca', 'BcaC02g11889' => 'bca', 'BcaC03g14010' => 'bca', 'BcaC03g18439' => 'bca', 'BcaC04g19765' => 'bca', 'BcaC09g48432' => 'bca', 'BcaNung07302' => 'bca', 'BolC2t06040H' => 'bol', 'BolC2t07346H' => 'bol', 'BolC3t13817H' => 'bol', 'BolC4t22625H' => 'bol', 'BolC4t23297H' => 'bol', 'BolC8t51278H' => 'bol', 'BolC9t58050H' => 'bol', 'BolC9t58051H' => 'bol', 'BolC9t60163H' => 'bol', 'BraA02t04712Z' => 'bra', 'BraA02t05791Z' => 'bra', 'BraA03t10483Z' => 'bra', 'BraA05t19795Z' => 'bra', 'BraA05t20276Z' => 'bra', 'BraA09t40827Z' => 'bra', 'BraA10t43750Z' => 'bra', 'BraA10t43751Z' => 'bra', 'BraA10t45370Z' => 'bra', 'C02p00400' => 'bna', 'C02p12460' => 'bna', 'C03p13680' => 'bna', 'C04p10270' => 'bna', 'C04p17500' => 'bna', 'C08p37010' => 'bna', 'C09p51880' => 'bna', 'C09p51890' => 'bna', 'C09p74300' => 'bna', 'CAN.G179.26' => 'can', 'CAN.G3384.1' => 'can', 'CAN.G394.68' => 'can', 'CAN.G907.13' => 'can', 'CANSAT11G0012' => 'cansat', 'CANSAT25G1586' => 'cansat', 'CANSAT35G0735' => 'cansat', 'CANSAT54G0556' => 'cansat', 'CANSAT64G0356' => 'cansat', 'CANSAT78G2042' => 'cansat', 'CARHR125920' => 'chi', 'CARHR131910' => 'chi', 'CARHR172390' => 'chi', 'CARHR211140' => 'chi', 'CARHR285850' => 'chi', 'CARHR285860' => 'chi', 'Carub.0004s1347' => 'cru', 'Carub.0004s1960' => 'cru', 'Carub.0005s2880' => 'cru', 'Carub.0006s0107' => 'cru', 'Carub.0008s2015' => 'cru', 'Carub.0008s2016' => 'cru', 'Carub.0008s2017' => 'cru', 'Ca_01315_v3' => 'car', 'Ca_05063_v3' => 'car', 'Ca_10231_v3' => 'car', 'Ca_10913_v3' => 'car', 'Ca_19156_v3' => 'car', 'Ca_23644_v3' => 'car', 'Ca_26735_v3' => 'car', 'Cc01_g13130' => 'ccan', 'Cc02_g21690' => 'ccan', 'Cc03_g03600' => 'ccan', 'Cc06_g02510' => 'ccan', 'CDE02G1265' => 'cde', 'CDE05G0415' => 'cde', 'CDE08G1082' => 'cde', 'Cfa005780' => 'cfa', 'Cfa011522' => 'cfa', 'Cfa011523' => 'cfa', 'Cfa015627' => 'cfa', 'Cfa017359' => 'cfa', 'Ciclev10005687m.g' => 'ccl', 'Ciclev10012173m.g' => 'ccl', 'Ciclev10021621m.g' => 'ccl', 'Ciclev10028968m.g' => 'ccl', 'Ciclev10029907m.g' => 'ccl', 'CiPaw.01G164800' => 'cil', 'CiPaw.07G083700' => 'cil', 'CiPaw.07G127000' => 'cil', 'CiPaw.07G136900' => 'cil', 'CiPaw.08G081700' => 'cil', 'CiPaw.09G194600' => 'cil', 'CiPaw.10G146500' => 'cil', 'CiPaw.13G091500' => 'cil', 'CiPaw.13G091600' => 'cil', 'ClCG00G003390' => 'cla', 'ClCG01G007220' => 'cla', 'ClCG03G001370' => 'cla', 'ClCG04G008100' => 'cla', 'ClCG06G006110' => 'cla', 'ClCG06G006130' => 'cla', 'ClCG10G021210' => 'cla', 'COL.COLO4_07648' => 'col', 'COL.COLO4_07650' => 'col', 'COL.COLO4_07651' => 'col', 'COL.COLO4_14780' => 'col', 'COL.COLO4_18546' => 'col', 'COL.COLO4_18547' => 'col', 'COL.COLO4_23103' => 'col', 'COL.COLO4_30419' => 'col', 'COL.COLO4_34232' => 'col', 'Cpa.g.sc169.20' => 'cpa', 'Cpa.g.sc57.45' => 'cpa', 'Cpa.g.sc58.124' => 'cpa', 'Cpa.g.sc58.125' => 'cpa', 'Cpa.g.sc81.118' => 'cpa', 'Cpa.g.sc81.119' => 'cpa', 'Cre12.g524700' => 'cre', 'CsaV3_1G034430' => 'csa', 'CsaV3_1G034440' => 'csa', 'CsaV3_1G034450' => 'csa', 'CsaV3_3G034830' => 'csa', 'CsaV3_4G025090' => 'csa', 'CsaV3_5G018660' => 'csa', 'CsaV3_6G038160' => 'csa', 'CSS0003447' => 'camsi', 'CSS0017840' => 'camsi', 'CSS0019260' => 'camsi', 'CSS0040375' => 'camsi', 'CSS0042533' => 'camsi', 'DCAR_005960' => 'dca', 'DCAR_012104' => 'dca', 'DCAR_012105' => 'dca', 'DCAR_012293' => 'dca', 'DCAR_015632' => 'dca', 'DCAR_024602' => 'dca', 'DCAR_028752' => 'dca', 'Dinv06261' => 'din', 'Dinv13982' => 'din', 'Dinv17029' => 'din', 'Dinv18463' => 'din', 'Dinv33181' => 'din', 'Dinv35585' => 'din', 'Dinv37161' => 'din', 'Dinv42977' => 'din', 'Dinv43122' => 'din', 'Dinv44517' => 'din', 'Duzib093G0256' => 'dzi', 'Duzib106G1254' => 'dzi', 'Duzib128G1789' => 'dzi', 'Duzib133G0633' => 'dzi', 'Duzib138G0510' => 'dzi', 'Duzib150G1084' => 'dzi', 'Duzib168G0488' => 'dzi', 'Duzib168G1523' => 'dzi', 'Duzib170G0133' => 'dzi', 'ECA234G1433' => 'eca', 'ECA236G1432' => 'eca', 'ECA236G2256' => 'eca', 'ECA236G2365' => 'eca', 'ECA236G4830' => 'eca', 'ECA248G1505' => 'eca', 'EL10Ac3g06431' => 'bvu', 'EL10Ac5g12577' => 'bvu', 'EL10Ac6g13533' => 'bvu', 'EL10Ac7g16045' => 'bvu', 'Eucgr.A01281' => 'egr', 'Eucgr.B02326' => 'egr', 'Eucgr.H03532' => 'egr', 'Eucgr.K00553' => 'egr', 'Eucgr.K03116' => 'egr', 'FAN02G3963' => 'fan', 'FAN05G0438' => 'fan', 'FAN09G2434' => 'fan', 'FAN12G3984' => 'fan', 'FAN14G0798' => 'fan', 'FAN17G0652' => 'fan', 'FAN19G1988' => 'fan', 'FAN22G0632' => 'fan', 'FAN23G0387' => 'fan', 'FAN26G1323' => 'fan', 'FAN28G0666' => 'fan', 'FvH4_1g26080' => 'fve', 'FvH4_3g36780' => 'fve', 'FvH4_4g15270' => 'fve', 'FvH4_6g13490' => 'fve', 'Glyma.01G098700' => 'gma', 'Glyma.03G065900' => 'gma', 'Glyma.03G073754' => 'gma', 'Glyma.03G073758' => 'gma', 'Glyma.03G083200' => 'gma', 'Glyma.03G225500' => 'gma', 'Glyma.05G037766' => 'gma', 'Glyma.07G133500' => 'gma', 'Glyma.10G139400' => 'gma', 'Glyma.10G248900' => 'gma', 'Glyma.11G137800' => 'gma', 'Glyma.12G061300' => 'gma', 'Glyma.13G337900' => 'gma', 'Glyma.15G036600' => 'gma', 'Glyma.18G182800' => 'gma', 'Glyma.19G222500' => 'gma', 'Glyma.20G144800' => 'gma', 'Gohir.A01G222000' => 'ghi', 'Gohir.A03G044000' => 'ghi', 'Gohir.A03G044100' => 'ghi', 'Gohir.A04G083100' => 'ghi', 'Gohir.A07G127200' => 'ghi', 'Gohir.A07G132400' => 'ghi', 'Gohir.A08G000700' => 'ghi', 'Gohir.A11G327300' => 'ghi', 'Gohir.D01G211500' => 'ghi', 'Gohir.D03G123400' => 'ghi', 'Gohir.D03G123500' => 'ghi', 'Gohir.D04G121800' => 'ghi', 'Gohir.D07G131500' => 'ghi', 'Gohir.D07G136600' => 'ghi', 'Gohir.D08G011600' => 'ghi', 'Gohir.D11G346200' => 'ghi', 'Gorai.001G142800' => 'gra', 'Gorai.001G148700' => 'gra', 'Gorai.002G257300' => 'gra', 'Gorai.003G130000' => 'gra', 'Gorai.003G130100' => 'gra', 'Gorai.004G005300' => 'gra', 'Gorai.007G376500' => 'gra', 'Gorai.012G104700' => 'gra', 'GSVIVG01017946001' => 'vvi', 'GSVIVG01024928001' => 'vvi', 'GSVIVG01028227001' => 'vvi', 'GSVIVG01034151001' => 'vvi', 'HanXRQChr05g0135031' => 'han', 'HanXRQChr05g0135041' => 'han', 'HanXRQChr05g0140021' => 'han', 'HanXRQChr06g0178981' => 'han', 'HanXRQChr07g0188251' => 'han', 'HanXRQChr08g0235311' => 'han', 'HanXRQChr09g0271011' => 'han', 'HanXRQChr10g0293321' => 'han', 'HanXRQChr13g0388171' => 'han', 'Haze_00916' => 'cav', 'Haze_05063' => 'cav', 'Haze_20814' => 'cav', 'Haze_24128' => 'cav', 'Hma1.2p1_0745F.1_g212010' => 'hma', 'Hma1.2p1_0757F.1_g213260' => 'hma', 'Hma1.2p1_0936F.1_g238840' => 'hma', 'Hma1.2p1_1735F.1_g299890' => 'hma', 'Hma1.2p1_1861F.1_g305685' => 'hma', 'HPP92_003397' => 'vpl', 'HPP92_012597' => 'vpl', 'HPP92_015520' => 'vpl', 'HPP92_015539' => 'vpl', 'HPP92_020373' => 'vpl', 'Hund04938' => 'sun', 'Hund10677' => 'sun', 'Hund11033' => 'sun', 'Hund12155' => 'sun', 'Lalb_Chr01g0022551' => 'lal', 'Lalb_Chr03g0042341' => 'lal', 'Lalb_Chr07g0192931' => 'lal', 'Lalb_Chr12g0209551' => 'lal', 'Lalb_Chr19g0125251' => 'lal', 'Lalb_Chr19g0137891' => 'lal', 'Lalb_Chr21g0304641' => 'lal', 'Lalb_Chr21g0309881' => 'lal', 'Lj1A5T12' => 'lonja', 'Lj1C148G10' => 'lonja', 'Lj2A93T83' => 'lonja', 'Lj3A738G68' => 'lonja', 'Lj3C966T1' => 'lonja', 'Lj3g0018958' => 'lja', 'Lj3g0021831' => 'lja', 'Lj3g0025443' => 'lja', 'Lj4g0026809' => 'lja', 'Lj5g0012558' => 'lja', 'Lj5g0021586' => 'lja', 'Lsat_1_v5_gn_5_156840' => 'lsa', 'Lsat_1_v5_gn_8_73460' => 'lsa', 'Lsat_1_v5_gn_8_73481' => 'lsa', 'Lsat_1_v5_gn_9_31601' => 'lsa', 'Lsat_1_v5_gn_9_77320' => 'lsa', 'Manes.01G171300' => 'mes', 'Manes.01G171400' => 'mes', 'Manes.01G236100' => 'mes', 'Manes.02G130500' => 'mes', 'Manes.02G130600' => 'mes', 'Manes.03G180200' => 'mes', 'Manes.05G007000' => 'mes', 'Manes.08G084400' => 'mes', 'Manes.09G092600' => 'mes', 'Manes.15G027900' => 'mes', 'MBI04_g40948_MAGBIO' => 'mbi', 'MBI14_g12123_MAGBIO' => 'mbi', 'MBI18_g28915_MAGBIO' => 'mbi', 'MCO09G053' => 'mco', 'MCO11G782' => 'mco', 'MCO15G215' => 'mco', 'MD03G1088500' => 'mdo', 'MD03G1088600' => 'mdo', 'MD04G1130800' => 'mdo', 'MD09G1291700' => 'mdo', 'MD11G1097500' => 'mdo', 'MD11G1097600' => 'mdo', 'MD12G1143900' => 'mdo', 'MD13G1191400' => 'mdo', 'MD16G1191500' => 'mdo', 'Medtr1g085570' => 'mtr', 'Medtr1g104610' => 'mtr', 'Medtr2g097520' => 'mtr', 'Medtr4g021800' => 'mtr', 'Medtr4g021825' => 'mtr', 'Medtr4g064270' => 'mtr', 'Medtr4g064380' => 'mtr', 'Medtr7g062150' => 'mtr', 'MELO3C003138.2' => 'cme', 'MELO3C005187.2' => 'cme', 'MELO3C009252.2' => 'cme', 'MELO3C014481.2' => 'cme', 'MELO3C020616.2' => 'cme', 'MELO3C020617.2' => 'cme', 'MELO3C020618.2' => 'cme', 'Migut.G00328' => 'egut', 'Migut.J00320' => 'egut', 'Migut.L01000' => 'egut', 'Migut.L01953' => 'egut', 'MSTRG.10253' => 'ama', 'MSTRG.19077' => 'ama', 'MSTRG.26780' => 'ama', 'MSTRG.4023' => 'ama', 'MSTRG.5655' => 'ama', 'MSTRG.9992' => 'ama', 'Nitab4.5_0000043g0310' => 'nta', 'Nitab4.5_0000463g0080' => 'nta', 'Nitab4.5_0000705g0170' => 'nta', 'Nitab4.5_0001326g0060' => 'nta', 'Nitab4.5_0001628g0030' => 'nta', 'Nitab4.5_0002103g0110' => 'nta', 'Nitab4.5_0002946g0030' => 'nta', 'Nitab4.5_0004639g0030' => 'nta', 'Nn2g11149' => 'nnu', 'Nn2g13389' => 'nnu', 'Nn4g25326' => 'nnu', 'Nn4g26290' => 'nnu', 'Nn5g29865' => 'nnu', 'Oeu004163.1' => 'oeu', 'Oeu006901.1' => 'oeu', 'Oeu010096.1' => 'oeu', 'Oeu024340.1' => 'oeu', 'Oeu048369.1' => 'oeu', 'Os01g0973000' => 'osa', 'Os03g0273800' => 'osa', 'Os03g0701200' => 'osa', 'Os03g0834050' => 'osa', 'Os07g0634400' => 'osa', 'Peaxi162Scf00092g01414' => 'pax', 'Peaxi162Scf00165g00818' => 'pax', 'Peaxi162Scf00309g00516' => 'pax', 'Peaxi162Scf00774g00218' => 'pax', 'PGR004G1824' => 'pgr', 'PGR004G2606' => 'pgr', 'PGR031G2716' => 'pgr', 'PGR102G2460' => 'pgr', 'PGR142G2599' => 'pgr', 'PGSC0003DMG400000843' => 'stu', 'PGSC0003DMG400008829' => 'stu', 'PGSC0003DMG400030418' => 'stu', 'PGSC0003DMG400031834' => 'stu', 'PGSC0003DMG401028300' => 'stu', 'PGSC0003DMG402028300' => 'stu', 'Phvul.001G219300' => 'pvu', 'Phvul.007G056000' => 'pvu', 'Phvul.007G208000' => 'pvu', 'Phvul.008G119500' => 'pvu', 'Phvul.010G011200' => 'pvu', 'Phvul.010G014800' => 'pvu', 'Phvul.011G062900' => 'pvu', 'Phvul.L007043' => 'pvu', 'Potri.001G242300' => 'ptr', 'Potri.002G185300' => 'ptr', 'Potri.006G086900' => 'ptr', 'Potri.008G151700' => 'ptr', 'Potri.009G033500' => 'ptr', 'Potri.010G089300' => 'ptr', 'Potri.014G110800' => 'ptr', 'Pp3c27_8130' => 'ppa', 'Pp3c6_27410' => 'ppa', 'PRCOL_00001659' => 'pco', 'PRCOL_00001927' => 'pco', 'PRCOL_00003649' => 'pco', 'Prupe.1G011600' => 'ppe', 'Prupe.3G000800' => 'ppe', 'Prupe.3G001100' => 'ppe', 'Prupe.6G072700' => 'ppe', 'Prupe.6G072800' => 'ppe', 'Prupe.6G257300' => 'ppe', 'Prupe.8G033000' => 'ppe', 'Psat0s2633g0080' => 'psa', 'Psat0s3396g0080' => 'psa', 'Psat0s3396g0200' => 'psa', 'Psat3g139080' => 'psa', 'Psat5g285080' => 'psa', 'Psat6g157760' => 'psa', 'Psat6g208440' => 'psa', 'Psat7g215320' => 'psa', 'Psat7g215400' => 'psa', 'Psat7g235600' => 'psa', 'Psat7g235760' => 'psa', 'PSO063G4603' => 'pso', 'PSO210G0182' => 'pso', 'PSO210G0196' => 'pso', 'PSO339G0394' => 'pso', 'PSO339G4127' => 'pso', 'PSO513G0064' => 'pso', 'PSO761G0079' => 'pso', 'QL01p031003' => 'qlo', 'QL01p031078' => 'qlo', 'QL06p003004' => 'qlo', 'QL07p048731' => 'qlo', 'QL09p037427' => 'qlo', 'RcHm_v2.0_Chr3g0466361' => 'rch', 'RcHm_v2.0_Chr3g0485571' => 'rch', 'RcHm_v2.0_Chr4g0416551' => 'rch', 'RcHm_v2.0_Chr5g0065831' => 'rch', 'Rhsim01G0230500' => 'rsi', 'Rhsim05G0194000' => 'rsi', 'Rhsim08G0250400' => 'rsi', 'Sabra02G0131000' => 'sbr', 'Sabra06G0066300' => 'sbr', 'Sabra08G0115500' => 'sbr', 'Sabra09G0023900' => 'sbr', 'Sabra10G0054000' => 'sbr', 'Sabra14G0081500' => 'sbr', 'Sabra16G0147100' => 'sbr', 'SalBow2G2957' => 'sbo', 'SalBow4G3320' => 'sbo', 'SalBow8G1894' => 'sbo', 'Sc07g0007950' => 'sci', 'Sc12g0001360' => 'sci', 'Sc13g0004330' => 'sci', 'Sc20g0005010' => 'sci', 'Sed0000361' => 'sed', 'Sed0001706' => 'sed', 'Sed0002422' => 'sed', 'Sed0004029' => 'sed', 'Sed0004602' => 'sed', 'Sed0004943' => 'sed', 'Sed0008646' => 'sed', 'Sed0023313' => 'sed', 'Sed0024843' => 'sed', 'SEGI_00081' => 'sgi', 'SEGI_00947' => 'sgi', 'SEGI_04046' => 'sgi', 'SEGI_06880' => 'sgi', 'SEGI_09736' => 'sgi', 'SEGI_12741' => 'sgi', 'SEGI_14530' => 'sgi', 'SEGI_20705' => 'sgi', 'SEGI_26088' => 'sgi', 'SEGI_28323' => 'sgi', 'SEGI_33343' => 'sgi', 'SGA_v2.0_scaffold126G33775' => 'sas', 'SGA_v2.0_scaffold2G01337' => 'sas', 'SGA_v2.0_scaffold38G15006' => 'sas', 'SGA_v2.0_scaffold39G15264' => 'sas', 'SGA_v2.0_scaffold453G51880' => 'sas', 'SHI12696' => 'shi', 'SMO367G1096' => 'smo', 'Solyc01g068630.3' => 'sly', 'Solyc05g011880.3' => 'sly', 'Solyc06g076300.3' => 'sly', 'Solyc09g010940.4' => 'sly', 'Solyc09g075890.3' => 'sly', 'Sopen01g030560' => 'spe', 'Sopen05g006630' => 'spe', 'Sopen06g032720' => 'spe', 'Sopen09g005660' => 'spe', 'Sopen09g030690' => 'spe', 'Sp4g14540' => 'spa', 'Sp4g20030' => 'spa', 'Sp5g01320' => 'spa', 'Sp6g21170' => 'spa', 'Sp6g21180' => 'spa', 'Sp6g21190' => 'spa', 'Sp6g40220' => 'spa', 'TAR362G0122' => 'tar', 'TAR362G1338' => 'tar', 'TAR369G0590' => 'tar', 'TAR371G0824' => 'tar', 'TAR622G1429' => 'tar', 'TAR623G0734' => 'tar', 'TAR625G0441' => 'tar', 'TAR629G0976' => 'tar', 'TAR633G1195' => 'tar', 'TAR636G2660' => 'tar', 'THA.LOC104799440' => 'tha', 'THA.LOC104800966' => 'tha', 'THA.LOC104806559' => 'tha', 'THA.LOC104810765' => 'tha', 'THA.LOC104816266' => 'tha', 'THA.LOC104817419' => 'tha', 'THA.LOC104827021' => 'tha', 'Thecc.01G327400' => 'tca', 'Thecc.04G229200' => 'tca', 'Thecc.05G037400' => 'tca', 'Thecc.09G318600' => 'tca', 'Thecc.09G318700' => 'tca', 'Thhalv10006238m.g' => 'esa', 'Thhalv10014321m.g' => 'esa', 'Thhalv10014335m.g' => 'esa', 'Thhalv10015826m.g' => 'esa', 'Thhalv10017107m.g' => 'esa', 'Thhalv10017180m.g' => 'esa', 'Thhalv10029339m.g' => 'esa', 'TPR.G1699' => 'tpr', 'TPR.G23609' => 'tpr', 'TPR.G3081' => 'tpr', 'TPR.G40397' => 'tpr', 'TPR.G5522' => 'tpr', 'TPR.G5618' => 'tpr', 'TPR.G5626' => 'tpr', 'TWI09G1632' => 'twi', 'TWI23G1230' => 'twi', 'TWI53G1064' => 'twi', 'TWI59G0751' => 'twi', 'TWI74G0947' => 'twi', 'TWI77G0337' => 'twi', 'TWI79G1254' => 'twi', 'unitig_0.g2341' => 'ugi', 'unitig_26.g10006' => 'ugi', 'unitig_26.g10008' => 'ugi', 'unitig_26.g9192' => 'ugi', 'vmacro14547' => 'vma', 'vmacro15333' => 'vma', 'vmacro18743' => 'vma', 'vmacro20166' => 'vma', 'VMungo0331G0523' => 'vmu', 'VMungo0331G1202' => 'vmu', 'VMungo0720G1228' => 'vmu', 'VMungo0720G1514' => 'vmu', 'VMungo1080G0169' => 'vmu', 'VMungo1127G1475' => 'vmu', 'VMungo1383G1208' => 'vmu', 'VMungo1383G1698' => 'vmu', 'Zm00001eb012270' => 'zma', 'Zm00001eb054100' => 'zma', 'Zm00001eb063350' => 'zma', 'Zm00001eb328560' => 'zma', 'Zm00001eb342820' => 'zma', 'Zm00001eb362210' => 'zma', 'Zm00001eb397730' => 'zma', 'Zm00001eb399750' => 'zma' ) $gf_id = 'HOM05D000959' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000959' ) $data_identifier = 'HOM05D000959' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 5, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 5, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 10, 'mbi' => (int) 3, 'mco' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 2, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 3, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 11, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399750' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000959', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '622', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p07100' => 'bna', 'A03p11720' => 'bna', 'A05p08300' => 'bna', 'A05p13380' => 'bna', 'A09p54130' => 'bna', 'A10p16690' => 'bna', 'A10p16700' => 'bna', 'A10p33390' => 'bna', 'Aa31LG10G16020' => 'aar', 'Aa31LG1G11810' => 'aar', 'Aa31LG1G11830' => 'aar', 'Aa31LG1G22510' => 'aar', 'Aa31LG5G4890' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5793' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2310' => 'aag', 'Actinidia08499' => 'ach', 'Actinidia11262' => 'ach', 'Actinidia23926' => 'ach', 'Actinidia34420' => 'ach', 'Actinidia36970' => 'ach', 'Ah.02g111220' => 'amhyb', 'Ah.15g097750' => 'amhyb', 'AL4G27500' => 'aly', 'AL6G11470' => 'aly', 'AL8G35950' => 'aly', 'AL8G35960' => 'aly', 'AL8G35970' => 'aly', 'Aqoxy1G00912' => 'aox', 'Aqoxy2G02253' => 'aox', 'Aqoxy2G02411' => 'aox', 'Aqoxy5G00485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BZ66YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K8ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM4FUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6BF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HFV7XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25JBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0YNNV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MAKK6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P70IT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP2Z6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V61LZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YWP64R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3S9AI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7PGHH' => 'arhy', 'AT2G32150' => 'ath', 'AT3G62040' => 'ath', 'AT5G02230' => 'ath', 'AT5G59480' => 'ath', 'AT5G59490' => 'ath', 'ATR0332G060' => 'atr', 'ATR0559G190' => 'atr', 'ATR0693G294' => 'atr', 'Atru.chr3.3975' => 'acertr', 'Atru.chr3.3976' => 'acertr', 'Atru.chr3.3977' => 'acertr', 'Atru.chr4.2498' => 'acertr', 'Atru.chr5.838' => 'acertr', 'Atru.chr8.1990' => 'acertr', 'Atru.chr8.1991' => 'acertr', 'Atru.chr8.1992' => 'acertr', 'AUR62001759' => 'cqu', 'AUR62009545' => 'cqu', 'AUR62010474' => 'cqu', 'AUR62025820' => 'cqu', 'AUR62030422' => 'cqu', 'AUR62033605' => 'cqu', 'AUR62038615' => 'cqu', 'AUR62041347' => 'cqu', 'BcaB01g04574' => 'bca', 'BcaB02g09263' => 'bca', 'BcaB02g10453' => 'bca', 'BcaB05g22513' => 'bca', 'BcaB08g36253' => 'bca', 'BcaB08g36254' => 'bca', 'BcaC01g06519' => 'bca', 'BcaC02g11889' => 'bca', 'BcaC03g14010' => 'bca', 'BcaC03g18439' => 'bca', 'BcaC04g19765' => 'bca', 'BcaC09g48432' => 'bca', 'BcaNung07302' => 'bca', 'BolC2t06040H' => 'bol', 'BolC2t07346H' => 'bol', 'BolC3t13817H' => 'bol', 'BolC4t22625H' => 'bol', 'BolC4t23297H' => 'bol', 'BolC8t51278H' => 'bol', 'BolC9t58050H' => 'bol', 'BolC9t58051H' => 'bol', 'BolC9t60163H' => 'bol', 'BraA02t04712Z' => 'bra', 'BraA02t05791Z' => 'bra', 'BraA03t10483Z' => 'bra', 'BraA05t19795Z' => 'bra', 'BraA05t20276Z' => 'bra', 'BraA09t40827Z' => 'bra', 'BraA10t43750Z' => 'bra', 'BraA10t43751Z' => 'bra', 'BraA10t45370Z' => 'bra', 'C02p00400' => 'bna', 'C02p12460' => 'bna', 'C03p13680' => 'bna', 'C04p10270' => 'bna', 'C04p17500' => 'bna', 'C08p37010' => 'bna', 'C09p51880' => 'bna', 'C09p51890' => 'bna', 'C09p74300' => 'bna', 'CAN.G179.26' => 'can', 'CAN.G3384.1' => 'can', 'CAN.G394.68' => 'can', 'CAN.G907.13' => 'can', 'CANSAT11G0012' => 'cansat', 'CANSAT25G1586' => 'cansat', 'CANSAT35G0735' => 'cansat', 'CANSAT54G0556' => 'cansat', 'CANSAT64G0356' => 'cansat', 'CANSAT78G2042' => 'cansat', 'CARHR125920' => 'chi', 'CARHR131910' => 'chi', 'CARHR172390' => 'chi', 'CARHR211140' => 'chi', 'CARHR285850' => 'chi', 'CARHR285860' => 'chi', 'Carub.0004s1347' => 'cru', 'Carub.0004s1960' => 'cru', 'Carub.0005s2880' => 'cru', 'Carub.0006s0107' => 'cru', 'Carub.0008s2015' => 'cru', 'Carub.0008s2016' => 'cru', 'Carub.0008s2017' => 'cru', 'Ca_01315_v3' => 'car', 'Ca_05063_v3' => 'car', 'Ca_10231_v3' => 'car', 'Ca_10913_v3' => 'car', 'Ca_19156_v3' => 'car', 'Ca_23644_v3' => 'car', 'Ca_26735_v3' => 'car', 'Cc01_g13130' => 'ccan', 'Cc02_g21690' => 'ccan', 'Cc03_g03600' => 'ccan', 'Cc06_g02510' => 'ccan', 'CDE02G1265' => 'cde', 'CDE05G0415' => 'cde', 'CDE08G1082' => 'cde', 'Cfa005780' => 'cfa', 'Cfa011522' => 'cfa', 'Cfa011523' => 'cfa', 'Cfa015627' => 'cfa', 'Cfa017359' => 'cfa', 'Ciclev10005687m.g' => 'ccl', 'Ciclev10012173m.g' => 'ccl', 'Ciclev10021621m.g' => 'ccl', 'Ciclev10028968m.g' => 'ccl', 'Ciclev10029907m.g' => 'ccl', 'CiPaw.01G164800' => 'cil', 'CiPaw.07G083700' => 'cil', 'CiPaw.07G127000' => 'cil', 'CiPaw.07G136900' => 'cil', 'CiPaw.08G081700' => 'cil', 'CiPaw.09G194600' => 'cil', 'CiPaw.10G146500' => 'cil', 'CiPaw.13G091500' => 'cil', 'CiPaw.13G091600' => 'cil', 'ClCG00G003390' => 'cla', 'ClCG01G007220' => 'cla', 'ClCG03G001370' => 'cla', 'ClCG04G008100' => 'cla', 'ClCG06G006110' => 'cla', 'ClCG06G006130' => 'cla', 'ClCG10G021210' => 'cla', 'COL.COLO4_07648' => 'col', 'COL.COLO4_07650' => 'col', 'COL.COLO4_07651' => 'col', 'COL.COLO4_14780' => 'col', 'COL.COLO4_18546' => 'col', 'COL.COLO4_18547' => 'col', 'COL.COLO4_23103' => 'col', 'COL.COLO4_30419' => 'col', 'COL.COLO4_34232' => 'col', 'Cpa.g.sc169.20' => 'cpa', 'Cpa.g.sc57.45' => 'cpa', 'Cpa.g.sc58.124' => 'cpa', 'Cpa.g.sc58.125' => 'cpa', 'Cpa.g.sc81.118' => 'cpa', 'Cpa.g.sc81.119' => 'cpa', 'Cre12.g524700' => 'cre', 'CsaV3_1G034430' => 'csa', 'CsaV3_1G034440' => 'csa', 'CsaV3_1G034450' => 'csa', 'CsaV3_3G034830' => 'csa', 'CsaV3_4G025090' => 'csa', 'CsaV3_5G018660' => 'csa', 'CsaV3_6G038160' => 'csa', 'CSS0003447' => 'camsi', 'CSS0017840' => 'camsi', 'CSS0019260' => 'camsi', 'CSS0040375' => 'camsi', 'CSS0042533' => 'camsi', 'DCAR_005960' => 'dca', 'DCAR_012104' => 'dca', 'DCAR_012105' => 'dca', 'DCAR_012293' => 'dca', 'DCAR_015632' => 'dca', 'DCAR_024602' => 'dca', 'DCAR_028752' => 'dca', 'Dinv06261' => 'din', 'Dinv13982' => 'din', 'Dinv17029' => 'din', 'Dinv18463' => 'din', 'Dinv33181' => 'din', 'Dinv35585' => 'din', 'Dinv37161' => 'din', 'Dinv42977' => 'din', 'Dinv43122' => 'din', 'Dinv44517' => 'din', 'Duzib093G0256' => 'dzi', 'Duzib106G1254' => 'dzi', 'Duzib128G1789' => 'dzi', 'Duzib133G0633' => 'dzi', 'Duzib138G0510' => 'dzi', 'Duzib150G1084' => 'dzi', 'Duzib168G0488' => 'dzi', 'Duzib168G1523' => 'dzi', 'Duzib170G0133' => 'dzi', 'ECA234G1433' => 'eca', 'ECA236G1432' => 'eca', 'ECA236G2256' => 'eca', 'ECA236G2365' => 'eca', 'ECA236G4830' => 'eca', 'ECA248G1505' => 'eca', 'EL10Ac3g06431' => 'bvu', 'EL10Ac5g12577' => 'bvu', 'EL10Ac6g13533' => 'bvu', 'EL10Ac7g16045' => 'bvu', 'Eucgr.A01281' => 'egr', 'Eucgr.B02326' => 'egr', 'Eucgr.H03532' => 'egr', 'Eucgr.K00553' => 'egr', 'Eucgr.K03116' => 'egr', 'FAN02G3963' => 'fan', 'FAN05G0438' => 'fan', 'FAN09G2434' => 'fan', 'FAN12G3984' => 'fan', 'FAN14G0798' => 'fan', 'FAN17G0652' => 'fan', 'FAN19G1988' => 'fan', 'FAN22G0632' => 'fan', 'FAN23G0387' => 'fan', 'FAN26G1323' => 'fan', 'FAN28G0666' => 'fan', 'FvH4_1g26080' => 'fve', 'FvH4_3g36780' => 'fve', 'FvH4_4g15270' => 'fve', 'FvH4_6g13490' => 'fve', 'Glyma.01G098700' => 'gma', 'Glyma.03G065900' => 'gma', 'Glyma.03G073754' => 'gma', 'Glyma.03G073758' => 'gma', 'Glyma.03G083200' => 'gma', 'Glyma.03G225500' => 'gma', 'Glyma.05G037766' => 'gma', 'Glyma.07G133500' => 'gma', 'Glyma.10G139400' => 'gma', 'Glyma.10G248900' => 'gma', 'Glyma.11G137800' => 'gma', 'Glyma.12G061300' => 'gma', 'Glyma.13G337900' => 'gma', 'Glyma.15G036600' => 'gma', 'Glyma.18G182800' => 'gma', 'Glyma.19G222500' => 'gma', 'Glyma.20G144800' => 'gma', 'Gohir.A01G222000' => 'ghi', 'Gohir.A03G044000' => 'ghi', 'Gohir.A03G044100' => 'ghi', 'Gohir.A04G083100' => 'ghi', 'Gohir.A07G127200' => 'ghi', 'Gohir.A07G132400' => 'ghi', 'Gohir.A08G000700' => 'ghi', 'Gohir.A11G327300' => 'ghi', 'Gohir.D01G211500' => 'ghi', 'Gohir.D03G123400' => 'ghi', 'Gohir.D03G123500' => 'ghi', 'Gohir.D04G121800' => 'ghi', 'Gohir.D07G131500' => 'ghi', 'Gohir.D07G136600' => 'ghi', 'Gohir.D08G011600' => 'ghi', 'Gohir.D11G346200' => 'ghi', 'Gorai.001G142800' => 'gra', 'Gorai.001G148700' => 'gra', 'Gorai.002G257300' => 'gra', 'Gorai.003G130000' => 'gra', 'Gorai.003G130100' => 'gra', 'Gorai.004G005300' => 'gra', 'Gorai.007G376500' => 'gra', 'Gorai.012G104700' => 'gra', 'GSVIVG01017946001' => 'vvi', 'GSVIVG01024928001' => 'vvi', 'GSVIVG01028227001' => 'vvi', 'GSVIVG01034151001' => 'vvi', 'HanXRQChr05g0135031' => 'han', 'HanXRQChr05g0135041' => 'han', 'HanXRQChr05g0140021' => 'han', 'HanXRQChr06g0178981' => 'han', 'HanXRQChr07g0188251' => 'han', 'HanXRQChr08g0235311' => 'han', 'HanXRQChr09g0271011' => 'han', 'HanXRQChr10g0293321' => 'han', 'HanXRQChr13g0388171' => 'han', 'Haze_00916' => 'cav', 'Haze_05063' => 'cav', 'Haze_20814' => 'cav', 'Haze_24128' => 'cav', 'Hma1.2p1_0745F.1_g212010' => 'hma', 'Hma1.2p1_0757F.1_g213260' => 'hma', 'Hma1.2p1_0936F.1_g238840' => 'hma', 'Hma1.2p1_1735F.1_g299890' => 'hma', 'Hma1.2p1_1861F.1_g305685' => 'hma', 'HPP92_003397' => 'vpl', 'HPP92_012597' => 'vpl', 'HPP92_015520' => 'vpl', 'HPP92_015539' => 'vpl', 'HPP92_020373' => 'vpl', 'Hund04938' => 'sun', 'Hund10677' => 'sun', 'Hund11033' => 'sun', 'Hund12155' => 'sun', 'Lalb_Chr01g0022551' => 'lal', 'Lalb_Chr03g0042341' => 'lal', 'Lalb_Chr07g0192931' => 'lal', 'Lalb_Chr12g0209551' => 'lal', 'Lalb_Chr19g0125251' => 'lal', 'Lalb_Chr19g0137891' => 'lal', 'Lalb_Chr21g0304641' => 'lal', 'Lalb_Chr21g0309881' => 'lal', 'Lj1A5T12' => 'lonja', 'Lj1C148G10' => 'lonja', 'Lj2A93T83' => 'lonja', 'Lj3A738G68' => 'lonja', 'Lj3C966T1' => 'lonja', 'Lj3g0018958' => 'lja', 'Lj3g0021831' => 'lja', 'Lj3g0025443' => 'lja', 'Lj4g0026809' => 'lja', 'Lj5g0012558' => 'lja', 'Lj5g0021586' => 'lja', 'Lsat_1_v5_gn_5_156840' => 'lsa', 'Lsat_1_v5_gn_8_73460' => 'lsa', 'Lsat_1_v5_gn_8_73481' => 'lsa', 'Lsat_1_v5_gn_9_31601' => 'lsa', 'Lsat_1_v5_gn_9_77320' => 'lsa', 'Manes.01G171300' => 'mes', 'Manes.01G171400' => 'mes', 'Manes.01G236100' => 'mes', 'Manes.02G130500' => 'mes', 'Manes.02G130600' => 'mes', 'Manes.03G180200' => 'mes', 'Manes.05G007000' => 'mes', 'Manes.08G084400' => 'mes', 'Manes.09G092600' => 'mes', 'Manes.15G027900' => 'mes', 'MBI04_g40948_MAGBIO' => 'mbi', 'MBI14_g12123_MAGBIO' => 'mbi', 'MBI18_g28915_MAGBIO' => 'mbi', 'MCO09G053' => 'mco', 'MCO11G782' => 'mco', 'MCO15G215' => 'mco', 'MD03G1088500' => 'mdo', 'MD03G1088600' => 'mdo', 'MD04G1130800' => 'mdo', 'MD09G1291700' => 'mdo', 'MD11G1097500' => 'mdo', 'MD11G1097600' => 'mdo', 'MD12G1143900' => 'mdo', 'MD13G1191400' => 'mdo', 'MD16G1191500' => 'mdo', 'Medtr1g085570' => 'mtr', 'Medtr1g104610' => 'mtr', 'Medtr2g097520' => 'mtr', 'Medtr4g021800' => 'mtr', 'Medtr4g021825' => 'mtr', 'Medtr4g064270' => 'mtr', 'Medtr4g064380' => 'mtr', 'Medtr7g062150' => 'mtr', 'MELO3C003138.2' => 'cme', 'MELO3C005187.2' => 'cme', 'MELO3C009252.2' => 'cme', 'MELO3C014481.2' => 'cme', 'MELO3C020616.2' => 'cme', 'MELO3C020617.2' => 'cme', 'MELO3C020618.2' => 'cme', 'Migut.G00328' => 'egut', 'Migut.J00320' => 'egut', 'Migut.L01000' => 'egut', 'Migut.L01953' => 'egut', 'MSTRG.10253' => 'ama', 'MSTRG.19077' => 'ama', 'MSTRG.26780' => 'ama', 'MSTRG.4023' => 'ama', 'MSTRG.5655' => 'ama', 'MSTRG.9992' => 'ama', 'Nitab4.5_0000043g0310' => 'nta', 'Nitab4.5_0000463g0080' => 'nta', 'Nitab4.5_0000705g0170' => 'nta', 'Nitab4.5_0001326g0060' => 'nta', 'Nitab4.5_0001628g0030' => 'nta', 'Nitab4.5_0002103g0110' => 'nta', 'Nitab4.5_0002946g0030' => 'nta', 'Nitab4.5_0004639g0030' => 'nta', 'Nn2g11149' => 'nnu', 'Nn2g13389' => 'nnu', 'Nn4g25326' => 'nnu', 'Nn4g26290' => 'nnu', 'Nn5g29865' => 'nnu', 'Oeu004163.1' => 'oeu', 'Oeu006901.1' => 'oeu', 'Oeu010096.1' => 'oeu', 'Oeu024340.1' => 'oeu', 'Oeu048369.1' => 'oeu', 'Os01g0973000' => 'osa', 'Os03g0273800' => 'osa', 'Os03g0701200' => 'osa', 'Os03g0834050' => 'osa', 'Os07g0634400' => 'osa', 'Peaxi162Scf00092g01414' => 'pax', 'Peaxi162Scf00165g00818' => 'pax', 'Peaxi162Scf00309g00516' => 'pax', 'Peaxi162Scf00774g00218' => 'pax', 'PGR004G1824' => 'pgr', 'PGR004G2606' => 'pgr', 'PGR031G2716' => 'pgr', 'PGR102G2460' => 'pgr', 'PGR142G2599' => 'pgr', 'PGSC0003DMG400000843' => 'stu', 'PGSC0003DMG400008829' => 'stu', 'PGSC0003DMG400030418' => 'stu', 'PGSC0003DMG400031834' => 'stu', 'PGSC0003DMG401028300' => 'stu', 'PGSC0003DMG402028300' => 'stu', 'Phvul.001G219300' => 'pvu', 'Phvul.007G056000' => 'pvu', 'Phvul.007G208000' => 'pvu', 'Phvul.008G119500' => 'pvu', 'Phvul.010G011200' => 'pvu', 'Phvul.010G014800' => 'pvu', 'Phvul.011G062900' => 'pvu', 'Phvul.L007043' => 'pvu', 'Potri.001G242300' => 'ptr', 'Potri.002G185300' => 'ptr', 'Potri.006G086900' => 'ptr', 'Potri.008G151700' => 'ptr', 'Potri.009G033500' => 'ptr', 'Potri.010G089300' => 'ptr', 'Potri.014G110800' => 'ptr', 'Pp3c27_8130' => 'ppa', 'Pp3c6_27410' => 'ppa', 'PRCOL_00001659' => 'pco', 'PRCOL_00001927' => 'pco', 'PRCOL_00003649' => 'pco', 'Prupe.1G011600' => 'ppe', 'Prupe.3G000800' => 'ppe', 'Prupe.3G001100' => 'ppe', 'Prupe.6G072700' => 'ppe', 'Prupe.6G072800' => 'ppe', 'Prupe.6G257300' => 'ppe', 'Prupe.8G033000' => 'ppe', 'Psat0s2633g0080' => 'psa', 'Psat0s3396g0080' => 'psa', 'Psat0s3396g0200' => 'psa', 'Psat3g139080' => 'psa', 'Psat5g285080' => 'psa', 'Psat6g157760' => 'psa', 'Psat6g208440' => 'psa', 'Psat7g215320' => 'psa', 'Psat7g215400' => 'psa', 'Psat7g235600' => 'psa', 'Psat7g235760' => 'psa', 'PSO063G4603' => 'pso', 'PSO210G0182' => 'pso', 'PSO210G0196' => 'pso', 'PSO339G0394' => 'pso', 'PSO339G4127' => 'pso', 'PSO513G0064' => 'pso', 'PSO761G0079' => 'pso', 'QL01p031003' => 'qlo', 'QL01p031078' => 'qlo', 'QL06p003004' => 'qlo', 'QL07p048731' => 'qlo', 'QL09p037427' => 'qlo', 'RcHm_v2.0_Chr3g0466361' => 'rch', 'RcHm_v2.0_Chr3g0485571' => 'rch', 'RcHm_v2.0_Chr4g0416551' => 'rch', 'RcHm_v2.0_Chr5g0065831' => 'rch', 'Rhsim01G0230500' => 'rsi', 'Rhsim05G0194000' => 'rsi', 'Rhsim08G0250400' => 'rsi', 'Sabra02G0131000' => 'sbr', 'Sabra06G0066300' => 'sbr', 'Sabra08G0115500' => 'sbr', 'Sabra09G0023900' => 'sbr', 'Sabra10G0054000' => 'sbr', 'Sabra14G0081500' => 'sbr', 'Sabra16G0147100' => 'sbr', 'SalBow2G2957' => 'sbo', 'SalBow4G3320' => 'sbo', 'SalBow8G1894' => 'sbo', 'Sc07g0007950' => 'sci', 'Sc12g0001360' => 'sci', 'Sc13g0004330' => 'sci', 'Sc20g0005010' => 'sci', 'Sed0000361' => 'sed', 'Sed0001706' => 'sed', 'Sed0002422' => 'sed', 'Sed0004029' => 'sed', 'Sed0004602' => 'sed', 'Sed0004943' => 'sed', 'Sed0008646' => 'sed', 'Sed0023313' => 'sed', 'Sed0024843' => 'sed', 'SEGI_00081' => 'sgi', 'SEGI_00947' => 'sgi', 'SEGI_04046' => 'sgi', 'SEGI_06880' => 'sgi', 'SEGI_09736' => 'sgi', 'SEGI_12741' => 'sgi', 'SEGI_14530' => 'sgi', 'SEGI_20705' => 'sgi', 'SEGI_26088' => 'sgi', 'SEGI_28323' => 'sgi', 'SEGI_33343' => 'sgi', 'SGA_v2.0_scaffold126G33775' => 'sas', 'SGA_v2.0_scaffold2G01337' => 'sas', 'SGA_v2.0_scaffold38G15006' => 'sas', 'SGA_v2.0_scaffold39G15264' => 'sas', 'SGA_v2.0_scaffold453G51880' => 'sas', 'SHI12696' => 'shi', 'SMO367G1096' => 'smo', 'Solyc01g068630.3' => 'sly', 'Solyc05g011880.3' => 'sly', 'Solyc06g076300.3' => 'sly', 'Solyc09g010940.4' => 'sly', 'Solyc09g075890.3' => 'sly', 'Sopen01g030560' => 'spe', 'Sopen05g006630' => 'spe', 'Sopen06g032720' => 'spe', 'Sopen09g005660' => 'spe', 'Sopen09g030690' => 'spe', 'Sp4g14540' => 'spa', 'Sp4g20030' => 'spa', 'Sp5g01320' => 'spa', 'Sp6g21170' => 'spa', 'Sp6g21180' => 'spa', 'Sp6g21190' => 'spa', 'Sp6g40220' => 'spa', 'TAR362G0122' => 'tar', 'TAR362G1338' => 'tar', 'TAR369G0590' => 'tar', 'TAR371G0824' => 'tar', 'TAR622G1429' => 'tar', 'TAR623G0734' => 'tar', 'TAR625G0441' => 'tar', 'TAR629G0976' => 'tar', 'TAR633G1195' => 'tar', 'TAR636G2660' => 'tar', 'THA.LOC104799440' => 'tha', 'THA.LOC104800966' => 'tha', 'THA.LOC104806559' => 'tha', 'THA.LOC104810765' => 'tha', 'THA.LOC104816266' => 'tha', 'THA.LOC104817419' => 'tha', 'THA.LOC104827021' => 'tha', 'Thecc.01G327400' => 'tca', 'Thecc.04G229200' => 'tca', 'Thecc.05G037400' => 'tca', 'Thecc.09G318600' => 'tca', 'Thecc.09G318700' => 'tca', 'Thhalv10006238m.g' => 'esa', 'Thhalv10014321m.g' => 'esa', 'Thhalv10014335m.g' => 'esa', 'Thhalv10015826m.g' => 'esa', 'Thhalv10017107m.g' => 'esa', 'Thhalv10017180m.g' => 'esa', 'Thhalv10029339m.g' => 'esa', 'TPR.G1699' => 'tpr', 'TPR.G23609' => 'tpr', 'TPR.G3081' => 'tpr', 'TPR.G40397' => 'tpr', 'TPR.G5522' => 'tpr', 'TPR.G5618' => 'tpr', 'TPR.G5626' => 'tpr', 'TWI09G1632' => 'twi', 'TWI23G1230' => 'twi', 'TWI53G1064' => 'twi', 'TWI59G0751' => 'twi', 'TWI74G0947' => 'twi', 'TWI77G0337' => 'twi', 'TWI79G1254' => 'twi', 'unitig_0.g2341' => 'ugi', 'unitig_26.g10006' => 'ugi', 'unitig_26.g10008' => 'ugi', 'unitig_26.g9192' => 'ugi', 'vmacro14547' => 'vma', 'vmacro15333' => 'vma', 'vmacro18743' => 'vma', 'vmacro20166' => 'vma', 'VMungo0331G0523' => 'vmu', 'VMungo0331G1202' => 'vmu', 'VMungo0720G1228' => 'vmu', 'VMungo0720G1514' => 'vmu', 'VMungo1080G0169' => 'vmu', 'VMungo1127G1475' => 'vmu', 'VMungo1383G1208' => 'vmu', 'VMungo1383G1698' => 'vmu', 'Zm00001eb012270' => 'zma', 'Zm00001eb054100' => 'zma', 'Zm00001eb063350' => 'zma', 'Zm00001eb328560' => 'zma', 'Zm00001eb342820' => 'zma', 'Zm00001eb362210' => 'zma', 'Zm00001eb397730' => 'zma', 'Zm00001eb399750' => 'zma' ), 'gf_id' => 'HOM05D000959', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000959' ), 'data_identifier' => 'HOM05D000959', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000959', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '622', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p07100' => 'bna', 'A03p11720' => 'bna', 'A05p08300' => 'bna', 'A05p13380' => 'bna', 'A09p54130' => 'bna', 'A10p16690' => 'bna', 'A10p16700' => 'bna', 'A10p33390' => 'bna', 'Aa31LG10G16020' => 'aar', 'Aa31LG1G11810' => 'aar', 'Aa31LG1G11830' => 'aar', 'Aa31LG1G22510' => 'aar', 'Aa31LG5G4890' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5793' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2310' => 'aag', 'Actinidia08499' => 'ach', 'Actinidia11262' => 'ach', 'Actinidia23926' => 'ach', 'Actinidia34420' => 'ach', 'Actinidia36970' => 'ach', 'Ah.02g111220' => 'amhyb', 'Ah.15g097750' => 'amhyb', 'AL4G27500' => 'aly', 'AL6G11470' => 'aly', 'AL8G35950' => 'aly', 'AL8G35960' => 'aly', 'AL8G35970' => 'aly', 'Aqoxy1G00912' => 'aox', 'Aqoxy2G02253' => 'aox', 'Aqoxy2G02411' => 'aox', 'Aqoxy5G00485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BZ66YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K8ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM4FUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6BF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HFV7XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25JBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0YNNV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MAKK6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P70IT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP2Z6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V61LZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YWP64R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3S9AI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7PGHH' => 'arhy', 'AT2G32150' => 'ath', 'AT3G62040' => 'ath', 'AT5G02230' => 'ath', 'AT5G59480' => 'ath', 'AT5G59490' => 'ath', 'ATR0332G060' => 'atr', 'ATR0559G190' => 'atr', 'ATR0693G294' => 'atr', 'Atru.chr3.3975' => 'acertr', 'Atru.chr3.3976' => 'acertr', 'Atru.chr3.3977' => 'acertr', 'Atru.chr4.2498' => 'acertr', 'Atru.chr5.838' => 'acertr', 'Atru.chr8.1990' => 'acertr', 'Atru.chr8.1991' => 'acertr', 'Atru.chr8.1992' => 'acertr', 'AUR62001759' => 'cqu', 'AUR62009545' => 'cqu', 'AUR62010474' => 'cqu', 'AUR62025820' => 'cqu', 'AUR62030422' => 'cqu', 'AUR62033605' => 'cqu', 'AUR62038615' => 'cqu', 'AUR62041347' => 'cqu', 'BcaB01g04574' => 'bca', 'BcaB02g09263' => 'bca', 'BcaB02g10453' => 'bca', 'BcaB05g22513' => 'bca', 'BcaB08g36253' => 'bca', 'BcaB08g36254' => 'bca', 'BcaC01g06519' => 'bca', 'BcaC02g11889' => 'bca', 'BcaC03g14010' => 'bca', 'BcaC03g18439' => 'bca', 'BcaC04g19765' => 'bca', 'BcaC09g48432' => 'bca', 'BcaNung07302' => 'bca', 'BolC2t06040H' => 'bol', 'BolC2t07346H' => 'bol', 'BolC3t13817H' => 'bol', 'BolC4t22625H' => 'bol', 'BolC4t23297H' => 'bol', 'BolC8t51278H' => 'bol', 'BolC9t58050H' => 'bol', 'BolC9t58051H' => 'bol', 'BolC9t60163H' => 'bol', 'BraA02t04712Z' => 'bra', 'BraA02t05791Z' => 'bra', 'BraA03t10483Z' => 'bra', 'BraA05t19795Z' => 'bra', 'BraA05t20276Z' => 'bra', 'BraA09t40827Z' => 'bra', 'BraA10t43750Z' => 'bra', 'BraA10t43751Z' => 'bra', 'BraA10t45370Z' => 'bra', 'C02p00400' => 'bna', 'C02p12460' => 'bna', 'C03p13680' => 'bna', 'C04p10270' => 'bna', 'C04p17500' => 'bna', 'C08p37010' => 'bna', 'C09p51880' => 'bna', 'C09p51890' => 'bna', 'C09p74300' => 'bna', 'CAN.G179.26' => 'can', 'CAN.G3384.1' => 'can', 'CAN.G394.68' => 'can', 'CAN.G907.13' => 'can', 'CANSAT11G0012' => 'cansat', 'CANSAT25G1586' => 'cansat', 'CANSAT35G0735' => 'cansat', 'CANSAT54G0556' => 'cansat', 'CANSAT64G0356' => 'cansat', 'CANSAT78G2042' => 'cansat', 'CARHR125920' => 'chi', 'CARHR131910' => 'chi', 'CARHR172390' => 'chi', 'CARHR211140' => 'chi', 'CARHR285850' => 'chi', 'CARHR285860' => 'chi', 'Carub.0004s1347' => 'cru', 'Carub.0004s1960' => 'cru', 'Carub.0005s2880' => 'cru', 'Carub.0006s0107' => 'cru', 'Carub.0008s2015' => 'cru', 'Carub.0008s2016' => 'cru', 'Carub.0008s2017' => 'cru', 'Ca_01315_v3' => 'car', 'Ca_05063_v3' => 'car', 'Ca_10231_v3' => 'car', 'Ca_10913_v3' => 'car', 'Ca_19156_v3' => 'car', 'Ca_23644_v3' => 'car', 'Ca_26735_v3' => 'car', 'Cc01_g13130' => 'ccan', 'Cc02_g21690' => 'ccan', 'Cc03_g03600' => 'ccan', 'Cc06_g02510' => 'ccan', 'CDE02G1265' => 'cde', 'CDE05G0415' => 'cde', 'CDE08G1082' => 'cde', 'Cfa005780' => 'cfa', 'Cfa011522' => 'cfa', 'Cfa011523' => 'cfa', 'Cfa015627' => 'cfa', 'Cfa017359' => 'cfa', 'Ciclev10005687m.g' => 'ccl', 'Ciclev10012173m.g' => 'ccl', 'Ciclev10021621m.g' => 'ccl', 'Ciclev10028968m.g' => 'ccl', 'Ciclev10029907m.g' => 'ccl', 'CiPaw.01G164800' => 'cil', 'CiPaw.07G083700' => 'cil', 'CiPaw.07G127000' => 'cil', 'CiPaw.07G136900' => 'cil', 'CiPaw.08G081700' => 'cil', 'CiPaw.09G194600' => 'cil', 'CiPaw.10G146500' => 'cil', 'CiPaw.13G091500' => 'cil', 'CiPaw.13G091600' => 'cil', 'ClCG00G003390' => 'cla', 'ClCG01G007220' => 'cla', 'ClCG03G001370' => 'cla', 'ClCG04G008100' => 'cla', 'ClCG06G006110' => 'cla', 'ClCG06G006130' => 'cla', 'ClCG10G021210' => 'cla', 'COL.COLO4_07648' => 'col', 'COL.COLO4_07650' => 'col', 'COL.COLO4_07651' => 'col', 'COL.COLO4_14780' => 'col', 'COL.COLO4_18546' => 'col', 'COL.COLO4_18547' => 'col', 'COL.COLO4_23103' => 'col', 'COL.COLO4_30419' => 'col', 'COL.COLO4_34232' => 'col', 'Cpa.g.sc169.20' => 'cpa', 'Cpa.g.sc57.45' => 'cpa', 'Cpa.g.sc58.124' => 'cpa', 'Cpa.g.sc58.125' => 'cpa', 'Cpa.g.sc81.118' => 'cpa', 'Cpa.g.sc81.119' => 'cpa', 'Cre12.g524700' => 'cre', 'CsaV3_1G034430' => 'csa', 'CsaV3_1G034440' => 'csa', 'CsaV3_1G034450' => 'csa', 'CsaV3_3G034830' => 'csa', 'CsaV3_4G025090' => 'csa', 'CsaV3_5G018660' => 'csa', 'CsaV3_6G038160' => 'csa', 'CSS0003447' => 'camsi', 'CSS0017840' => 'camsi', 'CSS0019260' => 'camsi', 'CSS0040375' => 'camsi', 'CSS0042533' => 'camsi', 'DCAR_005960' => 'dca', 'DCAR_012104' => 'dca', 'DCAR_012105' => 'dca', 'DCAR_012293' => 'dca', 'DCAR_015632' => 'dca', 'DCAR_024602' => 'dca', 'DCAR_028752' => 'dca', 'Dinv06261' => 'din', 'Dinv13982' => 'din', 'Dinv17029' => 'din', 'Dinv18463' => 'din', 'Dinv33181' => 'din', 'Dinv35585' => 'din', 'Dinv37161' => 'din', 'Dinv42977' => 'din', 'Dinv43122' => 'din', 'Dinv44517' => 'din', 'Duzib093G0256' => 'dzi', 'Duzib106G1254' => 'dzi', 'Duzib128G1789' => 'dzi', 'Duzib133G0633' => 'dzi', 'Duzib138G0510' => 'dzi', 'Duzib150G1084' => 'dzi', 'Duzib168G0488' => 'dzi', 'Duzib168G1523' => 'dzi', 'Duzib170G0133' => 'dzi', 'ECA234G1433' => 'eca', 'ECA236G1432' => 'eca', 'ECA236G2256' => 'eca', 'ECA236G2365' => 'eca', 'ECA236G4830' => 'eca', 'ECA248G1505' => 'eca', 'EL10Ac3g06431' => 'bvu', 'EL10Ac5g12577' => 'bvu', 'EL10Ac6g13533' => 'bvu', 'EL10Ac7g16045' => 'bvu', 'Eucgr.A01281' => 'egr', 'Eucgr.B02326' => 'egr', 'Eucgr.H03532' => 'egr', 'Eucgr.K00553' => 'egr', 'Eucgr.K03116' => 'egr', 'FAN02G3963' => 'fan', 'FAN05G0438' => 'fan', 'FAN09G2434' => 'fan', 'FAN12G3984' => 'fan', 'FAN14G0798' => 'fan', 'FAN17G0652' => 'fan', 'FAN19G1988' => 'fan', 'FAN22G0632' => 'fan', 'FAN23G0387' => 'fan', 'FAN26G1323' => 'fan', 'FAN28G0666' => 'fan', 'FvH4_1g26080' => 'fve', 'FvH4_3g36780' => 'fve', 'FvH4_4g15270' => 'fve', 'FvH4_6g13490' => 'fve', 'Glyma.01G098700' => 'gma', 'Glyma.03G065900' => 'gma', 'Glyma.03G073754' => 'gma', 'Glyma.03G073758' => 'gma', 'Glyma.03G083200' => 'gma', 'Glyma.03G225500' => 'gma', 'Glyma.05G037766' => 'gma', 'Glyma.07G133500' => 'gma', 'Glyma.10G139400' => 'gma', 'Glyma.10G248900' => 'gma', 'Glyma.11G137800' => 'gma', 'Glyma.12G061300' => 'gma', 'Glyma.13G337900' => 'gma', 'Glyma.15G036600' => 'gma', 'Glyma.18G182800' => 'gma', 'Glyma.19G222500' => 'gma', 'Glyma.20G144800' => 'gma', 'Gohir.A01G222000' => 'ghi', 'Gohir.A03G044000' => 'ghi', 'Gohir.A03G044100' => 'ghi', 'Gohir.A04G083100' => 'ghi', 'Gohir.A07G127200' => 'ghi', 'Gohir.A07G132400' => 'ghi', 'Gohir.A08G000700' => 'ghi', 'Gohir.A11G327300' => 'ghi', 'Gohir.D01G211500' => 'ghi', 'Gohir.D03G123400' => 'ghi', 'Gohir.D03G123500' => 'ghi', 'Gohir.D04G121800' => 'ghi', 'Gohir.D07G131500' => 'ghi', 'Gohir.D07G136600' => 'ghi', 'Gohir.D08G011600' => 'ghi', 'Gohir.D11G346200' => 'ghi', 'Gorai.001G142800' => 'gra', 'Gorai.001G148700' => 'gra', 'Gorai.002G257300' => 'gra', 'Gorai.003G130000' => 'gra', 'Gorai.003G130100' => 'gra', 'Gorai.004G005300' => 'gra', 'Gorai.007G376500' => 'gra', 'Gorai.012G104700' => 'gra', 'GSVIVG01017946001' => 'vvi', 'GSVIVG01024928001' => 'vvi', 'GSVIVG01028227001' => 'vvi', 'GSVIVG01034151001' => 'vvi', 'HanXRQChr05g0135031' => 'han', 'HanXRQChr05g0135041' => 'han', 'HanXRQChr05g0140021' => 'han', 'HanXRQChr06g0178981' => 'han', 'HanXRQChr07g0188251' => 'han', 'HanXRQChr08g0235311' => 'han', 'HanXRQChr09g0271011' => 'han', 'HanXRQChr10g0293321' => 'han', 'HanXRQChr13g0388171' => 'han', 'Haze_00916' => 'cav', 'Haze_05063' => 'cav', 'Haze_20814' => 'cav', 'Haze_24128' => 'cav', 'Hma1.2p1_0745F.1_g212010' => 'hma', 'Hma1.2p1_0757F.1_g213260' => 'hma', 'Hma1.2p1_0936F.1_g238840' => 'hma', 'Hma1.2p1_1735F.1_g299890' => 'hma', 'Hma1.2p1_1861F.1_g305685' => 'hma', 'HPP92_003397' => 'vpl', 'HPP92_012597' => 'vpl', 'HPP92_015520' => 'vpl', 'HPP92_015539' => 'vpl', 'HPP92_020373' => 'vpl', 'Hund04938' => 'sun', 'Hund10677' => 'sun', 'Hund11033' => 'sun', 'Hund12155' => 'sun', 'Lalb_Chr01g0022551' => 'lal', 'Lalb_Chr03g0042341' => 'lal', 'Lalb_Chr07g0192931' => 'lal', 'Lalb_Chr12g0209551' => 'lal', 'Lalb_Chr19g0125251' => 'lal', 'Lalb_Chr19g0137891' => 'lal', 'Lalb_Chr21g0304641' => 'lal', 'Lalb_Chr21g0309881' => 'lal', 'Lj1A5T12' => 'lonja', 'Lj1C148G10' => 'lonja', 'Lj2A93T83' => 'lonja', 'Lj3A738G68' => 'lonja', 'Lj3C966T1' => 'lonja', 'Lj3g0018958' => 'lja', 'Lj3g0021831' => 'lja', 'Lj3g0025443' => 'lja', 'Lj4g0026809' => 'lja', 'Lj5g0012558' => 'lja', 'Lj5g0021586' => 'lja', 'Lsat_1_v5_gn_5_156840' => 'lsa', 'Lsat_1_v5_gn_8_73460' => 'lsa', 'Lsat_1_v5_gn_8_73481' => 'lsa', 'Lsat_1_v5_gn_9_31601' => 'lsa', 'Lsat_1_v5_gn_9_77320' => 'lsa', 'Manes.01G171300' => 'mes', 'Manes.01G171400' => 'mes', 'Manes.01G236100' => 'mes', 'Manes.02G130500' => 'mes', 'Manes.02G130600' => 'mes', 'Manes.03G180200' => 'mes', 'Manes.05G007000' => 'mes', 'Manes.08G084400' => 'mes', 'Manes.09G092600' => 'mes', 'Manes.15G027900' => 'mes', 'MBI04_g40948_MAGBIO' => 'mbi', 'MBI14_g12123_MAGBIO' => 'mbi', 'MBI18_g28915_MAGBIO' => 'mbi', 'MCO09G053' => 'mco', 'MCO11G782' => 'mco', 'MCO15G215' => 'mco', 'MD03G1088500' => 'mdo', 'MD03G1088600' => 'mdo', 'MD04G1130800' => 'mdo', 'MD09G1291700' => 'mdo', 'MD11G1097500' => 'mdo', 'MD11G1097600' => 'mdo', 'MD12G1143900' => 'mdo', 'MD13G1191400' => 'mdo', 'MD16G1191500' => 'mdo', 'Medtr1g085570' => 'mtr', 'Medtr1g104610' => 'mtr', 'Medtr2g097520' => 'mtr', 'Medtr4g021800' => 'mtr', 'Medtr4g021825' => 'mtr', 'Medtr4g064270' => 'mtr', 'Medtr4g064380' => 'mtr', 'Medtr7g062150' => 'mtr', 'MELO3C003138.2' => 'cme', 'MELO3C005187.2' => 'cme', 'MELO3C009252.2' => 'cme', 'MELO3C014481.2' => 'cme', 'MELO3C020616.2' => 'cme', 'MELO3C020617.2' => 'cme', 'MELO3C020618.2' => 'cme', 'Migut.G00328' => 'egut', 'Migut.J00320' => 'egut', 'Migut.L01000' => 'egut', 'Migut.L01953' => 'egut', 'MSTRG.10253' => 'ama', 'MSTRG.19077' => 'ama', 'MSTRG.26780' => 'ama', 'MSTRG.4023' => 'ama', 'MSTRG.5655' => 'ama', 'MSTRG.9992' => 'ama', 'Nitab4.5_0000043g0310' => 'nta', 'Nitab4.5_0000463g0080' => 'nta', 'Nitab4.5_0000705g0170' => 'nta', 'Nitab4.5_0001326g0060' => 'nta', 'Nitab4.5_0001628g0030' => 'nta', 'Nitab4.5_0002103g0110' => 'nta', 'Nitab4.5_0002946g0030' => 'nta', 'Nitab4.5_0004639g0030' => 'nta', 'Nn2g11149' => 'nnu', 'Nn2g13389' => 'nnu', 'Nn4g25326' => 'nnu', 'Nn4g26290' => 'nnu', 'Nn5g29865' => 'nnu', 'Oeu004163.1' => 'oeu', 'Oeu006901.1' => 'oeu', 'Oeu010096.1' => 'oeu', 'Oeu024340.1' => 'oeu', 'Oeu048369.1' => 'oeu', 'Os01g0973000' => 'osa', 'Os03g0273800' => 'osa', 'Os03g0701200' => 'osa', 'Os03g0834050' => 'osa', 'Os07g0634400' => 'osa', 'Peaxi162Scf00092g01414' => 'pax', 'Peaxi162Scf00165g00818' => 'pax', 'Peaxi162Scf00309g00516' => 'pax', 'Peaxi162Scf00774g00218' => 'pax', 'PGR004G1824' => 'pgr', 'PGR004G2606' => 'pgr', 'PGR031G2716' => 'pgr', 'PGR102G2460' => 'pgr', 'PGR142G2599' => 'pgr', 'PGSC0003DMG400000843' => 'stu', 'PGSC0003DMG400008829' => 'stu', 'PGSC0003DMG400030418' => 'stu', 'PGSC0003DMG400031834' => 'stu', 'PGSC0003DMG401028300' => 'stu', 'PGSC0003DMG402028300' => 'stu', 'Phvul.001G219300' => 'pvu', 'Phvul.007G056000' => 'pvu', 'Phvul.007G208000' => 'pvu', 'Phvul.008G119500' => 'pvu', 'Phvul.010G011200' => 'pvu', 'Phvul.010G014800' => 'pvu', 'Phvul.011G062900' => 'pvu', 'Phvul.L007043' => 'pvu', 'Potri.001G242300' => 'ptr', 'Potri.002G185300' => 'ptr', 'Potri.006G086900' => 'ptr', 'Potri.008G151700' => 'ptr', 'Potri.009G033500' => 'ptr', 'Potri.010G089300' => 'ptr', 'Potri.014G110800' => 'ptr', 'Pp3c27_8130' => 'ppa', 'Pp3c6_27410' => 'ppa', 'PRCOL_00001659' => 'pco', 'PRCOL_00001927' => 'pco', 'PRCOL_00003649' => 'pco', 'Prupe.1G011600' => 'ppe', 'Prupe.3G000800' => 'ppe', 'Prupe.3G001100' => 'ppe', 'Prupe.6G072700' => 'ppe', 'Prupe.6G072800' => 'ppe', 'Prupe.6G257300' => 'ppe', 'Prupe.8G033000' => 'ppe', 'Psat0s2633g0080' => 'psa', 'Psat0s3396g0080' => 'psa', 'Psat0s3396g0200' => 'psa', 'Psat3g139080' => 'psa', 'Psat5g285080' => 'psa', 'Psat6g157760' => 'psa', 'Psat6g208440' => 'psa', 'Psat7g215320' => 'psa', 'Psat7g215400' => 'psa', 'Psat7g235600' => 'psa', 'Psat7g235760' => 'psa', 'PSO063G4603' => 'pso', 'PSO210G0182' => 'pso', 'PSO210G0196' => 'pso', 'PSO339G0394' => 'pso', 'PSO339G4127' => 'pso', 'PSO513G0064' => 'pso', 'PSO761G0079' => 'pso', 'QL01p031003' => 'qlo', 'QL01p031078' => 'qlo', 'QL06p003004' => 'qlo', 'QL07p048731' => 'qlo', 'QL09p037427' => 'qlo', 'RcHm_v2.0_Chr3g0466361' => 'rch', 'RcHm_v2.0_Chr3g0485571' => 'rch', 'RcHm_v2.0_Chr4g0416551' => 'rch', 'RcHm_v2.0_Chr5g0065831' => 'rch', 'Rhsim01G0230500' => 'rsi', 'Rhsim05G0194000' => 'rsi', 'Rhsim08G0250400' => 'rsi', 'Sabra02G0131000' => 'sbr', 'Sabra06G0066300' => 'sbr', 'Sabra08G0115500' => 'sbr', 'Sabra09G0023900' => 'sbr', 'Sabra10G0054000' => 'sbr', 'Sabra14G0081500' => 'sbr', 'Sabra16G0147100' => 'sbr', 'SalBow2G2957' => 'sbo', 'SalBow4G3320' => 'sbo', 'SalBow8G1894' => 'sbo', 'Sc07g0007950' => 'sci', 'Sc12g0001360' => 'sci', 'Sc13g0004330' => 'sci', 'Sc20g0005010' => 'sci', 'Sed0000361' => 'sed', 'Sed0001706' => 'sed', 'Sed0002422' => 'sed', 'Sed0004029' => 'sed', 'Sed0004602' => 'sed', 'Sed0004943' => 'sed', 'Sed0008646' => 'sed', 'Sed0023313' => 'sed', 'Sed0024843' => 'sed', 'SEGI_00081' => 'sgi', 'SEGI_00947' => 'sgi', 'SEGI_04046' => 'sgi', 'SEGI_06880' => 'sgi', 'SEGI_09736' => 'sgi', 'SEGI_12741' => 'sgi', 'SEGI_14530' => 'sgi', 'SEGI_20705' => 'sgi', 'SEGI_26088' => 'sgi', 'SEGI_28323' => 'sgi', 'SEGI_33343' => 'sgi', 'SGA_v2.0_scaffold126G33775' => 'sas', 'SGA_v2.0_scaffold2G01337' => 'sas', 'SGA_v2.0_scaffold38G15006' => 'sas', 'SGA_v2.0_scaffold39G15264' => 'sas', 'SGA_v2.0_scaffold453G51880' => 'sas', 'SHI12696' => 'shi', 'SMO367G1096' => 'smo', 'Solyc01g068630.3' => 'sly', 'Solyc05g011880.3' => 'sly', 'Solyc06g076300.3' => 'sly', 'Solyc09g010940.4' => 'sly', 'Solyc09g075890.3' => 'sly', 'Sopen01g030560' => 'spe', 'Sopen05g006630' => 'spe', 'Sopen06g032720' => 'spe', 'Sopen09g005660' => 'spe', 'Sopen09g030690' => 'spe', 'Sp4g14540' => 'spa', 'Sp4g20030' => 'spa', 'Sp5g01320' => 'spa', 'Sp6g21170' => 'spa', 'Sp6g21180' => 'spa', 'Sp6g21190' => 'spa', 'Sp6g40220' => 'spa', 'TAR362G0122' => 'tar', 'TAR362G1338' => 'tar', 'TAR369G0590' => 'tar', 'TAR371G0824' => 'tar', 'TAR622G1429' => 'tar', 'TAR623G0734' => 'tar', 'TAR625G0441' => 'tar', 'TAR629G0976' => 'tar', 'TAR633G1195' => 'tar', 'TAR636G2660' => 'tar', 'THA.LOC104799440' => 'tha', 'THA.LOC104800966' => 'tha', 'THA.LOC104806559' => 'tha', 'THA.LOC104810765' => 'tha', 'THA.LOC104816266' => 'tha', 'THA.LOC104817419' => 'tha', 'THA.LOC104827021' => 'tha', 'Thecc.01G327400' => 'tca', 'Thecc.04G229200' => 'tca', 'Thecc.05G037400' => 'tca', 'Thecc.09G318600' => 'tca', 'Thecc.09G318700' => 'tca', 'Thhalv10006238m.g' => 'esa', 'Thhalv10014321m.g' => 'esa', 'Thhalv10014335m.g' => 'esa', 'Thhalv10015826m.g' => 'esa', 'Thhalv10017107m.g' => 'esa', 'Thhalv10017180m.g' => 'esa', 'Thhalv10029339m.g' => 'esa', 'TPR.G1699' => 'tpr', 'TPR.G23609' => 'tpr', 'TPR.G3081' => 'tpr', 'TPR.G40397' => 'tpr', 'TPR.G5522' => 'tpr', 'TPR.G5618' => 'tpr', 'TPR.G5626' => 'tpr', 'TWI09G1632' => 'twi', 'TWI23G1230' => 'twi', 'TWI53G1064' => 'twi', 'TWI59G0751' => 'twi', 'TWI74G0947' => 'twi', 'TWI77G0337' => 'twi', 'TWI79G1254' => 'twi', 'unitig_0.g2341' => 'ugi', 'unitig_26.g10006' => 'ugi', 'unitig_26.g10008' => 'ugi', 'unitig_26.g9192' => 'ugi', 'vmacro14547' => 'vma', 'vmacro15333' => 'vma', 'vmacro18743' => 'vma', 'vmacro20166' => 'vma', 'VMungo0331G0523' => 'vmu', 'VMungo0331G1202' => 'vmu', 'VMungo0720G1228' => 'vmu', 'VMungo0720G1514' => 'vmu', 'VMungo1080G0169' => 'vmu', 'VMungo1127G1475' => 'vmu', 'VMungo1383G1208' => 'vmu', 'VMungo1383G1698' => 'vmu', 'Zm00001eb012270' => 'zma', 'Zm00001eb054100' => 'zma', 'Zm00001eb063350' => 'zma', 'Zm00001eb328560' => 'zma', 'Zm00001eb342820' => 'zma', 'Zm00001eb362210' => 'zma', 'Zm00001eb397730' => 'zma', 'Zm00001eb399750' => 'zma' ) $gf_id = 'HOM05D000959' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000959' ) $data_identifier = 'HOM05D000959' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 5, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 5, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 10, 'mbi' => (int) 3, 'mco' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 2, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 3, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 11, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399750' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000959', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '622', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p07100' => 'bna', 'A03p11720' => 'bna', 'A05p08300' => 'bna', 'A05p13380' => 'bna', 'A09p54130' => 'bna', 'A10p16690' => 'bna', 'A10p16700' => 'bna', 'A10p33390' => 'bna', 'Aa31LG10G16020' => 'aar', 'Aa31LG1G11810' => 'aar', 'Aa31LG1G11830' => 'aar', 'Aa31LG1G22510' => 'aar', 'Aa31LG5G4890' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5793' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2310' => 'aag', 'Actinidia08499' => 'ach', 'Actinidia11262' => 'ach', 'Actinidia23926' => 'ach', 'Actinidia34420' => 'ach', 'Actinidia36970' => 'ach', 'Ah.02g111220' => 'amhyb', 'Ah.15g097750' => 'amhyb', 'AL4G27500' => 'aly', 'AL6G11470' => 'aly', 'AL8G35950' => 'aly', 'AL8G35960' => 'aly', 'AL8G35970' => 'aly', 'Aqoxy1G00912' => 'aox', 'Aqoxy2G02253' => 'aox', 'Aqoxy2G02411' => 'aox', 'Aqoxy5G00485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BZ66YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K8ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM4FUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6BF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HFV7XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25JBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0YNNV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MAKK6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P70IT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP2Z6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V61LZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YWP64R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3S9AI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7PGHH' => 'arhy', 'AT2G32150' => 'ath', 'AT3G62040' => 'ath', 'AT5G02230' => 'ath', 'AT5G59480' => 'ath', 'AT5G59490' => 'ath', 'ATR0332G060' => 'atr', 'ATR0559G190' => 'atr', 'ATR0693G294' => 'atr', 'Atru.chr3.3975' => 'acertr', 'Atru.chr3.3976' => 'acertr', 'Atru.chr3.3977' => 'acertr', 'Atru.chr4.2498' => 'acertr', 'Atru.chr5.838' => 'acertr', 'Atru.chr8.1990' => 'acertr', 'Atru.chr8.1991' => 'acertr', 'Atru.chr8.1992' => 'acertr', 'AUR62001759' => 'cqu', 'AUR62009545' => 'cqu', 'AUR62010474' => 'cqu', 'AUR62025820' => 'cqu', 'AUR62030422' => 'cqu', 'AUR62033605' => 'cqu', 'AUR62038615' => 'cqu', 'AUR62041347' => 'cqu', 'BcaB01g04574' => 'bca', 'BcaB02g09263' => 'bca', 'BcaB02g10453' => 'bca', 'BcaB05g22513' => 'bca', 'BcaB08g36253' => 'bca', 'BcaB08g36254' => 'bca', 'BcaC01g06519' => 'bca', 'BcaC02g11889' => 'bca', 'BcaC03g14010' => 'bca', 'BcaC03g18439' => 'bca', 'BcaC04g19765' => 'bca', 'BcaC09g48432' => 'bca', 'BcaNung07302' => 'bca', 'BolC2t06040H' => 'bol', 'BolC2t07346H' => 'bol', 'BolC3t13817H' => 'bol', 'BolC4t22625H' => 'bol', 'BolC4t23297H' => 'bol', 'BolC8t51278H' => 'bol', 'BolC9t58050H' => 'bol', 'BolC9t58051H' => 'bol', 'BolC9t60163H' => 'bol', 'BraA02t04712Z' => 'bra', 'BraA02t05791Z' => 'bra', 'BraA03t10483Z' => 'bra', 'BraA05t19795Z' => 'bra', 'BraA05t20276Z' => 'bra', 'BraA09t40827Z' => 'bra', 'BraA10t43750Z' => 'bra', 'BraA10t43751Z' => 'bra', 'BraA10t45370Z' => 'bra', 'C02p00400' => 'bna', 'C02p12460' => 'bna', 'C03p13680' => 'bna', 'C04p10270' => 'bna', 'C04p17500' => 'bna', 'C08p37010' => 'bna', 'C09p51880' => 'bna', 'C09p51890' => 'bna', 'C09p74300' => 'bna', 'CAN.G179.26' => 'can', 'CAN.G3384.1' => 'can', 'CAN.G394.68' => 'can', 'CAN.G907.13' => 'can', 'CANSAT11G0012' => 'cansat', 'CANSAT25G1586' => 'cansat', 'CANSAT35G0735' => 'cansat', 'CANSAT54G0556' => 'cansat', 'CANSAT64G0356' => 'cansat', 'CANSAT78G2042' => 'cansat', 'CARHR125920' => 'chi', 'CARHR131910' => 'chi', 'CARHR172390' => 'chi', 'CARHR211140' => 'chi', 'CARHR285850' => 'chi', 'CARHR285860' => 'chi', 'Carub.0004s1347' => 'cru', 'Carub.0004s1960' => 'cru', 'Carub.0005s2880' => 'cru', 'Carub.0006s0107' => 'cru', 'Carub.0008s2015' => 'cru', 'Carub.0008s2016' => 'cru', 'Carub.0008s2017' => 'cru', 'Ca_01315_v3' => 'car', 'Ca_05063_v3' => 'car', 'Ca_10231_v3' => 'car', 'Ca_10913_v3' => 'car', 'Ca_19156_v3' => 'car', 'Ca_23644_v3' => 'car', 'Ca_26735_v3' => 'car', 'Cc01_g13130' => 'ccan', 'Cc02_g21690' => 'ccan', 'Cc03_g03600' => 'ccan', 'Cc06_g02510' => 'ccan', 'CDE02G1265' => 'cde', 'CDE05G0415' => 'cde', 'CDE08G1082' => 'cde', 'Cfa005780' => 'cfa', 'Cfa011522' => 'cfa', 'Cfa011523' => 'cfa', 'Cfa015627' => 'cfa', 'Cfa017359' => 'cfa', 'Ciclev10005687m.g' => 'ccl', 'Ciclev10012173m.g' => 'ccl', 'Ciclev10021621m.g' => 'ccl', 'Ciclev10028968m.g' => 'ccl', 'Ciclev10029907m.g' => 'ccl', 'CiPaw.01G164800' => 'cil', 'CiPaw.07G083700' => 'cil', 'CiPaw.07G127000' => 'cil', 'CiPaw.07G136900' => 'cil', 'CiPaw.08G081700' => 'cil', 'CiPaw.09G194600' => 'cil', 'CiPaw.10G146500' => 'cil', 'CiPaw.13G091500' => 'cil', 'CiPaw.13G091600' => 'cil', 'ClCG00G003390' => 'cla', 'ClCG01G007220' => 'cla', 'ClCG03G001370' => 'cla', 'ClCG04G008100' => 'cla', 'ClCG06G006110' => 'cla', 'ClCG06G006130' => 'cla', 'ClCG10G021210' => 'cla', 'COL.COLO4_07648' => 'col', 'COL.COLO4_07650' => 'col', 'COL.COLO4_07651' => 'col', 'COL.COLO4_14780' => 'col', 'COL.COLO4_18546' => 'col', 'COL.COLO4_18547' => 'col', 'COL.COLO4_23103' => 'col', 'COL.COLO4_30419' => 'col', 'COL.COLO4_34232' => 'col', 'Cpa.g.sc169.20' => 'cpa', 'Cpa.g.sc57.45' => 'cpa', 'Cpa.g.sc58.124' => 'cpa', 'Cpa.g.sc58.125' => 'cpa', 'Cpa.g.sc81.118' => 'cpa', 'Cpa.g.sc81.119' => 'cpa', 'Cre12.g524700' => 'cre', 'CsaV3_1G034430' => 'csa', 'CsaV3_1G034440' => 'csa', 'CsaV3_1G034450' => 'csa', 'CsaV3_3G034830' => 'csa', 'CsaV3_4G025090' => 'csa', 'CsaV3_5G018660' => 'csa', 'CsaV3_6G038160' => 'csa', 'CSS0003447' => 'camsi', 'CSS0017840' => 'camsi', 'CSS0019260' => 'camsi', 'CSS0040375' => 'camsi', 'CSS0042533' => 'camsi', 'DCAR_005960' => 'dca', 'DCAR_012104' => 'dca', 'DCAR_012105' => 'dca', 'DCAR_012293' => 'dca', 'DCAR_015632' => 'dca', 'DCAR_024602' => 'dca', 'DCAR_028752' => 'dca', 'Dinv06261' => 'din', 'Dinv13982' => 'din', 'Dinv17029' => 'din', 'Dinv18463' => 'din', 'Dinv33181' => 'din', 'Dinv35585' => 'din', 'Dinv37161' => 'din', 'Dinv42977' => 'din', 'Dinv43122' => 'din', 'Dinv44517' => 'din', 'Duzib093G0256' => 'dzi', 'Duzib106G1254' => 'dzi', 'Duzib128G1789' => 'dzi', 'Duzib133G0633' => 'dzi', 'Duzib138G0510' => 'dzi', 'Duzib150G1084' => 'dzi', 'Duzib168G0488' => 'dzi', 'Duzib168G1523' => 'dzi', 'Duzib170G0133' => 'dzi', 'ECA234G1433' => 'eca', 'ECA236G1432' => 'eca', 'ECA236G2256' => 'eca', 'ECA236G2365' => 'eca', 'ECA236G4830' => 'eca', 'ECA248G1505' => 'eca', 'EL10Ac3g06431' => 'bvu', 'EL10Ac5g12577' => 'bvu', 'EL10Ac6g13533' => 'bvu', 'EL10Ac7g16045' => 'bvu', 'Eucgr.A01281' => 'egr', 'Eucgr.B02326' => 'egr', 'Eucgr.H03532' => 'egr', 'Eucgr.K00553' => 'egr', 'Eucgr.K03116' => 'egr', 'FAN02G3963' => 'fan', 'FAN05G0438' => 'fan', 'FAN09G2434' => 'fan', 'FAN12G3984' => 'fan', 'FAN14G0798' => 'fan', 'FAN17G0652' => 'fan', 'FAN19G1988' => 'fan', 'FAN22G0632' => 'fan', 'FAN23G0387' => 'fan', 'FAN26G1323' => 'fan', 'FAN28G0666' => 'fan', 'FvH4_1g26080' => 'fve', 'FvH4_3g36780' => 'fve', 'FvH4_4g15270' => 'fve', 'FvH4_6g13490' => 'fve', 'Glyma.01G098700' => 'gma', 'Glyma.03G065900' => 'gma', 'Glyma.03G073754' => 'gma', 'Glyma.03G073758' => 'gma', 'Glyma.03G083200' => 'gma', 'Glyma.03G225500' => 'gma', 'Glyma.05G037766' => 'gma', 'Glyma.07G133500' => 'gma', 'Glyma.10G139400' => 'gma', 'Glyma.10G248900' => 'gma', 'Glyma.11G137800' => 'gma', 'Glyma.12G061300' => 'gma', 'Glyma.13G337900' => 'gma', 'Glyma.15G036600' => 'gma', 'Glyma.18G182800' => 'gma', 'Glyma.19G222500' => 'gma', 'Glyma.20G144800' => 'gma', 'Gohir.A01G222000' => 'ghi', 'Gohir.A03G044000' => 'ghi', 'Gohir.A03G044100' => 'ghi', 'Gohir.A04G083100' => 'ghi', 'Gohir.A07G127200' => 'ghi', 'Gohir.A07G132400' => 'ghi', 'Gohir.A08G000700' => 'ghi', 'Gohir.A11G327300' => 'ghi', 'Gohir.D01G211500' => 'ghi', 'Gohir.D03G123400' => 'ghi', 'Gohir.D03G123500' => 'ghi', 'Gohir.D04G121800' => 'ghi', 'Gohir.D07G131500' => 'ghi', 'Gohir.D07G136600' => 'ghi', 'Gohir.D08G011600' => 'ghi', 'Gohir.D11G346200' => 'ghi', 'Gorai.001G142800' => 'gra', 'Gorai.001G148700' => 'gra', 'Gorai.002G257300' => 'gra', 'Gorai.003G130000' => 'gra', 'Gorai.003G130100' => 'gra', 'Gorai.004G005300' => 'gra', 'Gorai.007G376500' => 'gra', 'Gorai.012G104700' => 'gra', 'GSVIVG01017946001' => 'vvi', 'GSVIVG01024928001' => 'vvi', 'GSVIVG01028227001' => 'vvi', 'GSVIVG01034151001' => 'vvi', 'HanXRQChr05g0135031' => 'han', 'HanXRQChr05g0135041' => 'han', 'HanXRQChr05g0140021' => 'han', 'HanXRQChr06g0178981' => 'han', 'HanXRQChr07g0188251' => 'han', 'HanXRQChr08g0235311' => 'han', 'HanXRQChr09g0271011' => 'han', 'HanXRQChr10g0293321' => 'han', 'HanXRQChr13g0388171' => 'han', 'Haze_00916' => 'cav', 'Haze_05063' => 'cav', 'Haze_20814' => 'cav', 'Haze_24128' => 'cav', 'Hma1.2p1_0745F.1_g212010' => 'hma', 'Hma1.2p1_0757F.1_g213260' => 'hma', 'Hma1.2p1_0936F.1_g238840' => 'hma', 'Hma1.2p1_1735F.1_g299890' => 'hma', 'Hma1.2p1_1861F.1_g305685' => 'hma', 'HPP92_003397' => 'vpl', 'HPP92_012597' => 'vpl', 'HPP92_015520' => 'vpl', 'HPP92_015539' => 'vpl', 'HPP92_020373' => 'vpl', 'Hund04938' => 'sun', 'Hund10677' => 'sun', 'Hund11033' => 'sun', 'Hund12155' => 'sun', 'Lalb_Chr01g0022551' => 'lal', 'Lalb_Chr03g0042341' => 'lal', 'Lalb_Chr07g0192931' => 'lal', 'Lalb_Chr12g0209551' => 'lal', 'Lalb_Chr19g0125251' => 'lal', 'Lalb_Chr19g0137891' => 'lal', 'Lalb_Chr21g0304641' => 'lal', 'Lalb_Chr21g0309881' => 'lal', 'Lj1A5T12' => 'lonja', 'Lj1C148G10' => 'lonja', 'Lj2A93T83' => 'lonja', 'Lj3A738G68' => 'lonja', 'Lj3C966T1' => 'lonja', 'Lj3g0018958' => 'lja', 'Lj3g0021831' => 'lja', 'Lj3g0025443' => 'lja', 'Lj4g0026809' => 'lja', 'Lj5g0012558' => 'lja', 'Lj5g0021586' => 'lja', 'Lsat_1_v5_gn_5_156840' => 'lsa', 'Lsat_1_v5_gn_8_73460' => 'lsa', 'Lsat_1_v5_gn_8_73481' => 'lsa', 'Lsat_1_v5_gn_9_31601' => 'lsa', 'Lsat_1_v5_gn_9_77320' => 'lsa', 'Manes.01G171300' => 'mes', 'Manes.01G171400' => 'mes', 'Manes.01G236100' => 'mes', 'Manes.02G130500' => 'mes', 'Manes.02G130600' => 'mes', 'Manes.03G180200' => 'mes', 'Manes.05G007000' => 'mes', 'Manes.08G084400' => 'mes', 'Manes.09G092600' => 'mes', 'Manes.15G027900' => 'mes', 'MBI04_g40948_MAGBIO' => 'mbi', 'MBI14_g12123_MAGBIO' => 'mbi', 'MBI18_g28915_MAGBIO' => 'mbi', 'MCO09G053' => 'mco', 'MCO11G782' => 'mco', 'MCO15G215' => 'mco', 'MD03G1088500' => 'mdo', 'MD03G1088600' => 'mdo', 'MD04G1130800' => 'mdo', 'MD09G1291700' => 'mdo', 'MD11G1097500' => 'mdo', 'MD11G1097600' => 'mdo', 'MD12G1143900' => 'mdo', 'MD13G1191400' => 'mdo', 'MD16G1191500' => 'mdo', 'Medtr1g085570' => 'mtr', 'Medtr1g104610' => 'mtr', 'Medtr2g097520' => 'mtr', 'Medtr4g021800' => 'mtr', 'Medtr4g021825' => 'mtr', 'Medtr4g064270' => 'mtr', 'Medtr4g064380' => 'mtr', 'Medtr7g062150' => 'mtr', 'MELO3C003138.2' => 'cme', 'MELO3C005187.2' => 'cme', 'MELO3C009252.2' => 'cme', 'MELO3C014481.2' => 'cme', 'MELO3C020616.2' => 'cme', 'MELO3C020617.2' => 'cme', 'MELO3C020618.2' => 'cme', 'Migut.G00328' => 'egut', 'Migut.J00320' => 'egut', 'Migut.L01000' => 'egut', 'Migut.L01953' => 'egut', 'MSTRG.10253' => 'ama', 'MSTRG.19077' => 'ama', 'MSTRG.26780' => 'ama', 'MSTRG.4023' => 'ama', 'MSTRG.5655' => 'ama', 'MSTRG.9992' => 'ama', 'Nitab4.5_0000043g0310' => 'nta', 'Nitab4.5_0000463g0080' => 'nta', 'Nitab4.5_0000705g0170' => 'nta', 'Nitab4.5_0001326g0060' => 'nta', 'Nitab4.5_0001628g0030' => 'nta', 'Nitab4.5_0002103g0110' => 'nta', 'Nitab4.5_0002946g0030' => 'nta', 'Nitab4.5_0004639g0030' => 'nta', 'Nn2g11149' => 'nnu', 'Nn2g13389' => 'nnu', 'Nn4g25326' => 'nnu', 'Nn4g26290' => 'nnu', 'Nn5g29865' => 'nnu', 'Oeu004163.1' => 'oeu', 'Oeu006901.1' => 'oeu', 'Oeu010096.1' => 'oeu', 'Oeu024340.1' => 'oeu', 'Oeu048369.1' => 'oeu', 'Os01g0973000' => 'osa', 'Os03g0273800' => 'osa', 'Os03g0701200' => 'osa', 'Os03g0834050' => 'osa', 'Os07g0634400' => 'osa', 'Peaxi162Scf00092g01414' => 'pax', 'Peaxi162Scf00165g00818' => 'pax', 'Peaxi162Scf00309g00516' => 'pax', 'Peaxi162Scf00774g00218' => 'pax', 'PGR004G1824' => 'pgr', 'PGR004G2606' => 'pgr', 'PGR031G2716' => 'pgr', 'PGR102G2460' => 'pgr', 'PGR142G2599' => 'pgr', 'PGSC0003DMG400000843' => 'stu', 'PGSC0003DMG400008829' => 'stu', 'PGSC0003DMG400030418' => 'stu', 'PGSC0003DMG400031834' => 'stu', 'PGSC0003DMG401028300' => 'stu', 'PGSC0003DMG402028300' => 'stu', 'Phvul.001G219300' => 'pvu', 'Phvul.007G056000' => 'pvu', 'Phvul.007G208000' => 'pvu', 'Phvul.008G119500' => 'pvu', 'Phvul.010G011200' => 'pvu', 'Phvul.010G014800' => 'pvu', 'Phvul.011G062900' => 'pvu', 'Phvul.L007043' => 'pvu', 'Potri.001G242300' => 'ptr', 'Potri.002G185300' => 'ptr', 'Potri.006G086900' => 'ptr', 'Potri.008G151700' => 'ptr', 'Potri.009G033500' => 'ptr', 'Potri.010G089300' => 'ptr', 'Potri.014G110800' => 'ptr', 'Pp3c27_8130' => 'ppa', 'Pp3c6_27410' => 'ppa', 'PRCOL_00001659' => 'pco', 'PRCOL_00001927' => 'pco', 'PRCOL_00003649' => 'pco', 'Prupe.1G011600' => 'ppe', 'Prupe.3G000800' => 'ppe', 'Prupe.3G001100' => 'ppe', 'Prupe.6G072700' => 'ppe', 'Prupe.6G072800' => 'ppe', 'Prupe.6G257300' => 'ppe', 'Prupe.8G033000' => 'ppe', 'Psat0s2633g0080' => 'psa', 'Psat0s3396g0080' => 'psa', 'Psat0s3396g0200' => 'psa', 'Psat3g139080' => 'psa', 'Psat5g285080' => 'psa', 'Psat6g157760' => 'psa', 'Psat6g208440' => 'psa', 'Psat7g215320' => 'psa', 'Psat7g215400' => 'psa', 'Psat7g235600' => 'psa', 'Psat7g235760' => 'psa', 'PSO063G4603' => 'pso', 'PSO210G0182' => 'pso', 'PSO210G0196' => 'pso', 'PSO339G0394' => 'pso', 'PSO339G4127' => 'pso', 'PSO513G0064' => 'pso', 'PSO761G0079' => 'pso', 'QL01p031003' => 'qlo', 'QL01p031078' => 'qlo', 'QL06p003004' => 'qlo', 'QL07p048731' => 'qlo', 'QL09p037427' => 'qlo', 'RcHm_v2.0_Chr3g0466361' => 'rch', 'RcHm_v2.0_Chr3g0485571' => 'rch', 'RcHm_v2.0_Chr4g0416551' => 'rch', 'RcHm_v2.0_Chr5g0065831' => 'rch', 'Rhsim01G0230500' => 'rsi', 'Rhsim05G0194000' => 'rsi', 'Rhsim08G0250400' => 'rsi', 'Sabra02G0131000' => 'sbr', 'Sabra06G0066300' => 'sbr', 'Sabra08G0115500' => 'sbr', 'Sabra09G0023900' => 'sbr', 'Sabra10G0054000' => 'sbr', 'Sabra14G0081500' => 'sbr', 'Sabra16G0147100' => 'sbr', 'SalBow2G2957' => 'sbo', 'SalBow4G3320' => 'sbo', 'SalBow8G1894' => 'sbo', 'Sc07g0007950' => 'sci', 'Sc12g0001360' => 'sci', 'Sc13g0004330' => 'sci', 'Sc20g0005010' => 'sci', 'Sed0000361' => 'sed', 'Sed0001706' => 'sed', 'Sed0002422' => 'sed', 'Sed0004029' => 'sed', 'Sed0004602' => 'sed', 'Sed0004943' => 'sed', 'Sed0008646' => 'sed', 'Sed0023313' => 'sed', 'Sed0024843' => 'sed', 'SEGI_00081' => 'sgi', 'SEGI_00947' => 'sgi', 'SEGI_04046' => 'sgi', 'SEGI_06880' => 'sgi', 'SEGI_09736' => 'sgi', 'SEGI_12741' => 'sgi', 'SEGI_14530' => 'sgi', 'SEGI_20705' => 'sgi', 'SEGI_26088' => 'sgi', 'SEGI_28323' => 'sgi', 'SEGI_33343' => 'sgi', 'SGA_v2.0_scaffold126G33775' => 'sas', 'SGA_v2.0_scaffold2G01337' => 'sas', 'SGA_v2.0_scaffold38G15006' => 'sas', 'SGA_v2.0_scaffold39G15264' => 'sas', 'SGA_v2.0_scaffold453G51880' => 'sas', 'SHI12696' => 'shi', 'SMO367G1096' => 'smo', 'Solyc01g068630.3' => 'sly', 'Solyc05g011880.3' => 'sly', 'Solyc06g076300.3' => 'sly', 'Solyc09g010940.4' => 'sly', 'Solyc09g075890.3' => 'sly', 'Sopen01g030560' => 'spe', 'Sopen05g006630' => 'spe', 'Sopen06g032720' => 'spe', 'Sopen09g005660' => 'spe', 'Sopen09g030690' => 'spe', 'Sp4g14540' => 'spa', 'Sp4g20030' => 'spa', 'Sp5g01320' => 'spa', 'Sp6g21170' => 'spa', 'Sp6g21180' => 'spa', 'Sp6g21190' => 'spa', 'Sp6g40220' => 'spa', 'TAR362G0122' => 'tar', 'TAR362G1338' => 'tar', 'TAR369G0590' => 'tar', 'TAR371G0824' => 'tar', 'TAR622G1429' => 'tar', 'TAR623G0734' => 'tar', 'TAR625G0441' => 'tar', 'TAR629G0976' => 'tar', 'TAR633G1195' => 'tar', 'TAR636G2660' => 'tar', 'THA.LOC104799440' => 'tha', 'THA.LOC104800966' => 'tha', 'THA.LOC104806559' => 'tha', 'THA.LOC104810765' => 'tha', 'THA.LOC104816266' => 'tha', 'THA.LOC104817419' => 'tha', 'THA.LOC104827021' => 'tha', 'Thecc.01G327400' => 'tca', 'Thecc.04G229200' => 'tca', 'Thecc.05G037400' => 'tca', 'Thecc.09G318600' => 'tca', 'Thecc.09G318700' => 'tca', 'Thhalv10006238m.g' => 'esa', 'Thhalv10014321m.g' => 'esa', 'Thhalv10014335m.g' => 'esa', 'Thhalv10015826m.g' => 'esa', 'Thhalv10017107m.g' => 'esa', 'Thhalv10017180m.g' => 'esa', 'Thhalv10029339m.g' => 'esa', 'TPR.G1699' => 'tpr', 'TPR.G23609' => 'tpr', 'TPR.G3081' => 'tpr', 'TPR.G40397' => 'tpr', 'TPR.G5522' => 'tpr', 'TPR.G5618' => 'tpr', 'TPR.G5626' => 'tpr', 'TWI09G1632' => 'twi', 'TWI23G1230' => 'twi', 'TWI53G1064' => 'twi', 'TWI59G0751' => 'twi', 'TWI74G0947' => 'twi', 'TWI77G0337' => 'twi', 'TWI79G1254' => 'twi', 'unitig_0.g2341' => 'ugi', 'unitig_26.g10006' => 'ugi', 'unitig_26.g10008' => 'ugi', 'unitig_26.g9192' => 'ugi', 'vmacro14547' => 'vma', 'vmacro15333' => 'vma', 'vmacro18743' => 'vma', 'vmacro20166' => 'vma', 'VMungo0331G0523' => 'vmu', 'VMungo0331G1202' => 'vmu', 'VMungo0720G1228' => 'vmu', 'VMungo0720G1514' => 'vmu', 'VMungo1080G0169' => 'vmu', 'VMungo1127G1475' => 'vmu', 'VMungo1383G1208' => 'vmu', 'VMungo1383G1698' => 'vmu', 'Zm00001eb012270' => 'zma', 'Zm00001eb054100' => 'zma', 'Zm00001eb063350' => 'zma', 'Zm00001eb328560' => 'zma', 'Zm00001eb342820' => 'zma', 'Zm00001eb362210' => 'zma', 'Zm00001eb397730' => 'zma', 'Zm00001eb399750' => 'zma' ), 'gf_id' => 'HOM05D000959', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000959' ), 'data_identifier' => 'HOM05D000959', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000959', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '622', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p07100' => 'bna', 'A03p11720' => 'bna', 'A05p08300' => 'bna', 'A05p13380' => 'bna', 'A09p54130' => 'bna', 'A10p16690' => 'bna', 'A10p16700' => 'bna', 'A10p33390' => 'bna', 'Aa31LG10G16020' => 'aar', 'Aa31LG1G11810' => 'aar', 'Aa31LG1G11830' => 'aar', 'Aa31LG1G22510' => 'aar', 'Aa31LG5G4890' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5793' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2310' => 'aag', 'Actinidia08499' => 'ach', 'Actinidia11262' => 'ach', 'Actinidia23926' => 'ach', 'Actinidia34420' => 'ach', 'Actinidia36970' => 'ach', 'Ah.02g111220' => 'amhyb', 'Ah.15g097750' => 'amhyb', 'AL4G27500' => 'aly', 'AL6G11470' => 'aly', 'AL8G35950' => 'aly', 'AL8G35960' => 'aly', 'AL8G35970' => 'aly', 'Aqoxy1G00912' => 'aox', 'Aqoxy2G02253' => 'aox', 'Aqoxy2G02411' => 'aox', 'Aqoxy5G00485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BZ66YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K8ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM4FUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6BF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HFV7XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25JBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0YNNV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MAKK6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P70IT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP2Z6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V61LZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YWP64R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3S9AI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7PGHH' => 'arhy', 'AT2G32150' => 'ath', 'AT3G62040' => 'ath', 'AT5G02230' => 'ath', 'AT5G59480' => 'ath', 'AT5G59490' => 'ath', 'ATR0332G060' => 'atr', 'ATR0559G190' => 'atr', 'ATR0693G294' => 'atr', 'Atru.chr3.3975' => 'acertr', 'Atru.chr3.3976' => 'acertr', 'Atru.chr3.3977' => 'acertr', 'Atru.chr4.2498' => 'acertr', 'Atru.chr5.838' => 'acertr', 'Atru.chr8.1990' => 'acertr', 'Atru.chr8.1991' => 'acertr', 'Atru.chr8.1992' => 'acertr', 'AUR62001759' => 'cqu', 'AUR62009545' => 'cqu', 'AUR62010474' => 'cqu', 'AUR62025820' => 'cqu', 'AUR62030422' => 'cqu', 'AUR62033605' => 'cqu', 'AUR62038615' => 'cqu', 'AUR62041347' => 'cqu', 'BcaB01g04574' => 'bca', 'BcaB02g09263' => 'bca', 'BcaB02g10453' => 'bca', 'BcaB05g22513' => 'bca', 'BcaB08g36253' => 'bca', 'BcaB08g36254' => 'bca', 'BcaC01g06519' => 'bca', 'BcaC02g11889' => 'bca', 'BcaC03g14010' => 'bca', 'BcaC03g18439' => 'bca', 'BcaC04g19765' => 'bca', 'BcaC09g48432' => 'bca', 'BcaNung07302' => 'bca', 'BolC2t06040H' => 'bol', 'BolC2t07346H' => 'bol', 'BolC3t13817H' => 'bol', 'BolC4t22625H' => 'bol', 'BolC4t23297H' => 'bol', 'BolC8t51278H' => 'bol', 'BolC9t58050H' => 'bol', 'BolC9t58051H' => 'bol', 'BolC9t60163H' => 'bol', 'BraA02t04712Z' => 'bra', 'BraA02t05791Z' => 'bra', 'BraA03t10483Z' => 'bra', 'BraA05t19795Z' => 'bra', 'BraA05t20276Z' => 'bra', 'BraA09t40827Z' => 'bra', 'BraA10t43750Z' => 'bra', 'BraA10t43751Z' => 'bra', 'BraA10t45370Z' => 'bra', 'C02p00400' => 'bna', 'C02p12460' => 'bna', 'C03p13680' => 'bna', 'C04p10270' => 'bna', 'C04p17500' => 'bna', 'C08p37010' => 'bna', 'C09p51880' => 'bna', 'C09p51890' => 'bna', 'C09p74300' => 'bna', 'CAN.G179.26' => 'can', 'CAN.G3384.1' => 'can', 'CAN.G394.68' => 'can', 'CAN.G907.13' => 'can', 'CANSAT11G0012' => 'cansat', 'CANSAT25G1586' => 'cansat', 'CANSAT35G0735' => 'cansat', 'CANSAT54G0556' => 'cansat', 'CANSAT64G0356' => 'cansat', 'CANSAT78G2042' => 'cansat', 'CARHR125920' => 'chi', 'CARHR131910' => 'chi', 'CARHR172390' => 'chi', 'CARHR211140' => 'chi', 'CARHR285850' => 'chi', 'CARHR285860' => 'chi', 'Carub.0004s1347' => 'cru', 'Carub.0004s1960' => 'cru', 'Carub.0005s2880' => 'cru', 'Carub.0006s0107' => 'cru', 'Carub.0008s2015' => 'cru', 'Carub.0008s2016' => 'cru', 'Carub.0008s2017' => 'cru', 'Ca_01315_v3' => 'car', 'Ca_05063_v3' => 'car', 'Ca_10231_v3' => 'car', 'Ca_10913_v3' => 'car', 'Ca_19156_v3' => 'car', 'Ca_23644_v3' => 'car', 'Ca_26735_v3' => 'car', 'Cc01_g13130' => 'ccan', 'Cc02_g21690' => 'ccan', 'Cc03_g03600' => 'ccan', 'Cc06_g02510' => 'ccan', 'CDE02G1265' => 'cde', 'CDE05G0415' => 'cde', 'CDE08G1082' => 'cde', 'Cfa005780' => 'cfa', 'Cfa011522' => 'cfa', 'Cfa011523' => 'cfa', 'Cfa015627' => 'cfa', 'Cfa017359' => 'cfa', 'Ciclev10005687m.g' => 'ccl', 'Ciclev10012173m.g' => 'ccl', 'Ciclev10021621m.g' => 'ccl', 'Ciclev10028968m.g' => 'ccl', 'Ciclev10029907m.g' => 'ccl', 'CiPaw.01G164800' => 'cil', 'CiPaw.07G083700' => 'cil', 'CiPaw.07G127000' => 'cil', 'CiPaw.07G136900' => 'cil', 'CiPaw.08G081700' => 'cil', 'CiPaw.09G194600' => 'cil', 'CiPaw.10G146500' => 'cil', 'CiPaw.13G091500' => 'cil', 'CiPaw.13G091600' => 'cil', 'ClCG00G003390' => 'cla', 'ClCG01G007220' => 'cla', 'ClCG03G001370' => 'cla', 'ClCG04G008100' => 'cla', 'ClCG06G006110' => 'cla', 'ClCG06G006130' => 'cla', 'ClCG10G021210' => 'cla', 'COL.COLO4_07648' => 'col', 'COL.COLO4_07650' => 'col', 'COL.COLO4_07651' => 'col', 'COL.COLO4_14780' => 'col', 'COL.COLO4_18546' => 'col', 'COL.COLO4_18547' => 'col', 'COL.COLO4_23103' => 'col', 'COL.COLO4_30419' => 'col', 'COL.COLO4_34232' => 'col', 'Cpa.g.sc169.20' => 'cpa', 'Cpa.g.sc57.45' => 'cpa', 'Cpa.g.sc58.124' => 'cpa', 'Cpa.g.sc58.125' => 'cpa', 'Cpa.g.sc81.118' => 'cpa', 'Cpa.g.sc81.119' => 'cpa', 'Cre12.g524700' => 'cre', 'CsaV3_1G034430' => 'csa', 'CsaV3_1G034440' => 'csa', 'CsaV3_1G034450' => 'csa', 'CsaV3_3G034830' => 'csa', 'CsaV3_4G025090' => 'csa', 'CsaV3_5G018660' => 'csa', 'CsaV3_6G038160' => 'csa', 'CSS0003447' => 'camsi', 'CSS0017840' => 'camsi', 'CSS0019260' => 'camsi', 'CSS0040375' => 'camsi', 'CSS0042533' => 'camsi', 'DCAR_005960' => 'dca', 'DCAR_012104' => 'dca', 'DCAR_012105' => 'dca', 'DCAR_012293' => 'dca', 'DCAR_015632' => 'dca', 'DCAR_024602' => 'dca', 'DCAR_028752' => 'dca', 'Dinv06261' => 'din', 'Dinv13982' => 'din', 'Dinv17029' => 'din', 'Dinv18463' => 'din', 'Dinv33181' => 'din', 'Dinv35585' => 'din', 'Dinv37161' => 'din', 'Dinv42977' => 'din', 'Dinv43122' => 'din', 'Dinv44517' => 'din', 'Duzib093G0256' => 'dzi', 'Duzib106G1254' => 'dzi', 'Duzib128G1789' => 'dzi', 'Duzib133G0633' => 'dzi', 'Duzib138G0510' => 'dzi', 'Duzib150G1084' => 'dzi', 'Duzib168G0488' => 'dzi', 'Duzib168G1523' => 'dzi', 'Duzib170G0133' => 'dzi', 'ECA234G1433' => 'eca', 'ECA236G1432' => 'eca', 'ECA236G2256' => 'eca', 'ECA236G2365' => 'eca', 'ECA236G4830' => 'eca', 'ECA248G1505' => 'eca', 'EL10Ac3g06431' => 'bvu', 'EL10Ac5g12577' => 'bvu', 'EL10Ac6g13533' => 'bvu', 'EL10Ac7g16045' => 'bvu', 'Eucgr.A01281' => 'egr', 'Eucgr.B02326' => 'egr', 'Eucgr.H03532' => 'egr', 'Eucgr.K00553' => 'egr', 'Eucgr.K03116' => 'egr', 'FAN02G3963' => 'fan', 'FAN05G0438' => 'fan', 'FAN09G2434' => 'fan', 'FAN12G3984' => 'fan', 'FAN14G0798' => 'fan', 'FAN17G0652' => 'fan', 'FAN19G1988' => 'fan', 'FAN22G0632' => 'fan', 'FAN23G0387' => 'fan', 'FAN26G1323' => 'fan', 'FAN28G0666' => 'fan', 'FvH4_1g26080' => 'fve', 'FvH4_3g36780' => 'fve', 'FvH4_4g15270' => 'fve', 'FvH4_6g13490' => 'fve', 'Glyma.01G098700' => 'gma', 'Glyma.03G065900' => 'gma', 'Glyma.03G073754' => 'gma', 'Glyma.03G073758' => 'gma', 'Glyma.03G083200' => 'gma', 'Glyma.03G225500' => 'gma', 'Glyma.05G037766' => 'gma', 'Glyma.07G133500' => 'gma', 'Glyma.10G139400' => 'gma', 'Glyma.10G248900' => 'gma', 'Glyma.11G137800' => 'gma', 'Glyma.12G061300' => 'gma', 'Glyma.13G337900' => 'gma', 'Glyma.15G036600' => 'gma', 'Glyma.18G182800' => 'gma', 'Glyma.19G222500' => 'gma', 'Glyma.20G144800' => 'gma', 'Gohir.A01G222000' => 'ghi', 'Gohir.A03G044000' => 'ghi', 'Gohir.A03G044100' => 'ghi', 'Gohir.A04G083100' => 'ghi', 'Gohir.A07G127200' => 'ghi', 'Gohir.A07G132400' => 'ghi', 'Gohir.A08G000700' => 'ghi', 'Gohir.A11G327300' => 'ghi', 'Gohir.D01G211500' => 'ghi', 'Gohir.D03G123400' => 'ghi', 'Gohir.D03G123500' => 'ghi', 'Gohir.D04G121800' => 'ghi', 'Gohir.D07G131500' => 'ghi', 'Gohir.D07G136600' => 'ghi', 'Gohir.D08G011600' => 'ghi', 'Gohir.D11G346200' => 'ghi', 'Gorai.001G142800' => 'gra', 'Gorai.001G148700' => 'gra', 'Gorai.002G257300' => 'gra', 'Gorai.003G130000' => 'gra', 'Gorai.003G130100' => 'gra', 'Gorai.004G005300' => 'gra', 'Gorai.007G376500' => 'gra', 'Gorai.012G104700' => 'gra', 'GSVIVG01017946001' => 'vvi', 'GSVIVG01024928001' => 'vvi', 'GSVIVG01028227001' => 'vvi', 'GSVIVG01034151001' => 'vvi', 'HanXRQChr05g0135031' => 'han', 'HanXRQChr05g0135041' => 'han', 'HanXRQChr05g0140021' => 'han', 'HanXRQChr06g0178981' => 'han', 'HanXRQChr07g0188251' => 'han', 'HanXRQChr08g0235311' => 'han', 'HanXRQChr09g0271011' => 'han', 'HanXRQChr10g0293321' => 'han', 'HanXRQChr13g0388171' => 'han', 'Haze_00916' => 'cav', 'Haze_05063' => 'cav', 'Haze_20814' => 'cav', 'Haze_24128' => 'cav', 'Hma1.2p1_0745F.1_g212010' => 'hma', 'Hma1.2p1_0757F.1_g213260' => 'hma', 'Hma1.2p1_0936F.1_g238840' => 'hma', 'Hma1.2p1_1735F.1_g299890' => 'hma', 'Hma1.2p1_1861F.1_g305685' => 'hma', 'HPP92_003397' => 'vpl', 'HPP92_012597' => 'vpl', 'HPP92_015520' => 'vpl', 'HPP92_015539' => 'vpl', 'HPP92_020373' => 'vpl', 'Hund04938' => 'sun', 'Hund10677' => 'sun', 'Hund11033' => 'sun', 'Hund12155' => 'sun', 'Lalb_Chr01g0022551' => 'lal', 'Lalb_Chr03g0042341' => 'lal', 'Lalb_Chr07g0192931' => 'lal', 'Lalb_Chr12g0209551' => 'lal', 'Lalb_Chr19g0125251' => 'lal', 'Lalb_Chr19g0137891' => 'lal', 'Lalb_Chr21g0304641' => 'lal', 'Lalb_Chr21g0309881' => 'lal', 'Lj1A5T12' => 'lonja', 'Lj1C148G10' => 'lonja', 'Lj2A93T83' => 'lonja', 'Lj3A738G68' => 'lonja', 'Lj3C966T1' => 'lonja', 'Lj3g0018958' => 'lja', 'Lj3g0021831' => 'lja', 'Lj3g0025443' => 'lja', 'Lj4g0026809' => 'lja', 'Lj5g0012558' => 'lja', 'Lj5g0021586' => 'lja', 'Lsat_1_v5_gn_5_156840' => 'lsa', 'Lsat_1_v5_gn_8_73460' => 'lsa', 'Lsat_1_v5_gn_8_73481' => 'lsa', 'Lsat_1_v5_gn_9_31601' => 'lsa', 'Lsat_1_v5_gn_9_77320' => 'lsa', 'Manes.01G171300' => 'mes', 'Manes.01G171400' => 'mes', 'Manes.01G236100' => 'mes', 'Manes.02G130500' => 'mes', 'Manes.02G130600' => 'mes', 'Manes.03G180200' => 'mes', 'Manes.05G007000' => 'mes', 'Manes.08G084400' => 'mes', 'Manes.09G092600' => 'mes', 'Manes.15G027900' => 'mes', 'MBI04_g40948_MAGBIO' => 'mbi', 'MBI14_g12123_MAGBIO' => 'mbi', 'MBI18_g28915_MAGBIO' => 'mbi', 'MCO09G053' => 'mco', 'MCO11G782' => 'mco', 'MCO15G215' => 'mco', 'MD03G1088500' => 'mdo', 'MD03G1088600' => 'mdo', 'MD04G1130800' => 'mdo', 'MD09G1291700' => 'mdo', 'MD11G1097500' => 'mdo', 'MD11G1097600' => 'mdo', 'MD12G1143900' => 'mdo', 'MD13G1191400' => 'mdo', 'MD16G1191500' => 'mdo', 'Medtr1g085570' => 'mtr', 'Medtr1g104610' => 'mtr', 'Medtr2g097520' => 'mtr', 'Medtr4g021800' => 'mtr', 'Medtr4g021825' => 'mtr', 'Medtr4g064270' => 'mtr', 'Medtr4g064380' => 'mtr', 'Medtr7g062150' => 'mtr', 'MELO3C003138.2' => 'cme', 'MELO3C005187.2' => 'cme', 'MELO3C009252.2' => 'cme', 'MELO3C014481.2' => 'cme', 'MELO3C020616.2' => 'cme', 'MELO3C020617.2' => 'cme', 'MELO3C020618.2' => 'cme', 'Migut.G00328' => 'egut', 'Migut.J00320' => 'egut', 'Migut.L01000' => 'egut', 'Migut.L01953' => 'egut', 'MSTRG.10253' => 'ama', 'MSTRG.19077' => 'ama', 'MSTRG.26780' => 'ama', 'MSTRG.4023' => 'ama', 'MSTRG.5655' => 'ama', 'MSTRG.9992' => 'ama', 'Nitab4.5_0000043g0310' => 'nta', 'Nitab4.5_0000463g0080' => 'nta', 'Nitab4.5_0000705g0170' => 'nta', 'Nitab4.5_0001326g0060' => 'nta', 'Nitab4.5_0001628g0030' => 'nta', 'Nitab4.5_0002103g0110' => 'nta', 'Nitab4.5_0002946g0030' => 'nta', 'Nitab4.5_0004639g0030' => 'nta', 'Nn2g11149' => 'nnu', 'Nn2g13389' => 'nnu', 'Nn4g25326' => 'nnu', 'Nn4g26290' => 'nnu', 'Nn5g29865' => 'nnu', 'Oeu004163.1' => 'oeu', 'Oeu006901.1' => 'oeu', 'Oeu010096.1' => 'oeu', 'Oeu024340.1' => 'oeu', 'Oeu048369.1' => 'oeu', 'Os01g0973000' => 'osa', 'Os03g0273800' => 'osa', 'Os03g0701200' => 'osa', 'Os03g0834050' => 'osa', 'Os07g0634400' => 'osa', 'Peaxi162Scf00092g01414' => 'pax', 'Peaxi162Scf00165g00818' => 'pax', 'Peaxi162Scf00309g00516' => 'pax', 'Peaxi162Scf00774g00218' => 'pax', 'PGR004G1824' => 'pgr', 'PGR004G2606' => 'pgr', 'PGR031G2716' => 'pgr', 'PGR102G2460' => 'pgr', 'PGR142G2599' => 'pgr', 'PGSC0003DMG400000843' => 'stu', 'PGSC0003DMG400008829' => 'stu', 'PGSC0003DMG400030418' => 'stu', 'PGSC0003DMG400031834' => 'stu', 'PGSC0003DMG401028300' => 'stu', 'PGSC0003DMG402028300' => 'stu', 'Phvul.001G219300' => 'pvu', 'Phvul.007G056000' => 'pvu', 'Phvul.007G208000' => 'pvu', 'Phvul.008G119500' => 'pvu', 'Phvul.010G011200' => 'pvu', 'Phvul.010G014800' => 'pvu', 'Phvul.011G062900' => 'pvu', 'Phvul.L007043' => 'pvu', 'Potri.001G242300' => 'ptr', 'Potri.002G185300' => 'ptr', 'Potri.006G086900' => 'ptr', 'Potri.008G151700' => 'ptr', 'Potri.009G033500' => 'ptr', 'Potri.010G089300' => 'ptr', 'Potri.014G110800' => 'ptr', 'Pp3c27_8130' => 'ppa', 'Pp3c6_27410' => 'ppa', 'PRCOL_00001659' => 'pco', 'PRCOL_00001927' => 'pco', 'PRCOL_00003649' => 'pco', 'Prupe.1G011600' => 'ppe', 'Prupe.3G000800' => 'ppe', 'Prupe.3G001100' => 'ppe', 'Prupe.6G072700' => 'ppe', 'Prupe.6G072800' => 'ppe', 'Prupe.6G257300' => 'ppe', 'Prupe.8G033000' => 'ppe', 'Psat0s2633g0080' => 'psa', 'Psat0s3396g0080' => 'psa', 'Psat0s3396g0200' => 'psa', 'Psat3g139080' => 'psa', 'Psat5g285080' => 'psa', 'Psat6g157760' => 'psa', 'Psat6g208440' => 'psa', 'Psat7g215320' => 'psa', 'Psat7g215400' => 'psa', 'Psat7g235600' => 'psa', 'Psat7g235760' => 'psa', 'PSO063G4603' => 'pso', 'PSO210G0182' => 'pso', 'PSO210G0196' => 'pso', 'PSO339G0394' => 'pso', 'PSO339G4127' => 'pso', 'PSO513G0064' => 'pso', 'PSO761G0079' => 'pso', 'QL01p031003' => 'qlo', 'QL01p031078' => 'qlo', 'QL06p003004' => 'qlo', 'QL07p048731' => 'qlo', 'QL09p037427' => 'qlo', 'RcHm_v2.0_Chr3g0466361' => 'rch', 'RcHm_v2.0_Chr3g0485571' => 'rch', 'RcHm_v2.0_Chr4g0416551' => 'rch', 'RcHm_v2.0_Chr5g0065831' => 'rch', 'Rhsim01G0230500' => 'rsi', 'Rhsim05G0194000' => 'rsi', 'Rhsim08G0250400' => 'rsi', 'Sabra02G0131000' => 'sbr', 'Sabra06G0066300' => 'sbr', 'Sabra08G0115500' => 'sbr', 'Sabra09G0023900' => 'sbr', 'Sabra10G0054000' => 'sbr', 'Sabra14G0081500' => 'sbr', 'Sabra16G0147100' => 'sbr', 'SalBow2G2957' => 'sbo', 'SalBow4G3320' => 'sbo', 'SalBow8G1894' => 'sbo', 'Sc07g0007950' => 'sci', 'Sc12g0001360' => 'sci', 'Sc13g0004330' => 'sci', 'Sc20g0005010' => 'sci', 'Sed0000361' => 'sed', 'Sed0001706' => 'sed', 'Sed0002422' => 'sed', 'Sed0004029' => 'sed', 'Sed0004602' => 'sed', 'Sed0004943' => 'sed', 'Sed0008646' => 'sed', 'Sed0023313' => 'sed', 'Sed0024843' => 'sed', 'SEGI_00081' => 'sgi', 'SEGI_00947' => 'sgi', 'SEGI_04046' => 'sgi', 'SEGI_06880' => 'sgi', 'SEGI_09736' => 'sgi', 'SEGI_12741' => 'sgi', 'SEGI_14530' => 'sgi', 'SEGI_20705' => 'sgi', 'SEGI_26088' => 'sgi', 'SEGI_28323' => 'sgi', 'SEGI_33343' => 'sgi', 'SGA_v2.0_scaffold126G33775' => 'sas', 'SGA_v2.0_scaffold2G01337' => 'sas', 'SGA_v2.0_scaffold38G15006' => 'sas', 'SGA_v2.0_scaffold39G15264' => 'sas', 'SGA_v2.0_scaffold453G51880' => 'sas', 'SHI12696' => 'shi', 'SMO367G1096' => 'smo', 'Solyc01g068630.3' => 'sly', 'Solyc05g011880.3' => 'sly', 'Solyc06g076300.3' => 'sly', 'Solyc09g010940.4' => 'sly', 'Solyc09g075890.3' => 'sly', 'Sopen01g030560' => 'spe', 'Sopen05g006630' => 'spe', 'Sopen06g032720' => 'spe', 'Sopen09g005660' => 'spe', 'Sopen09g030690' => 'spe', 'Sp4g14540' => 'spa', 'Sp4g20030' => 'spa', 'Sp5g01320' => 'spa', 'Sp6g21170' => 'spa', 'Sp6g21180' => 'spa', 'Sp6g21190' => 'spa', 'Sp6g40220' => 'spa', 'TAR362G0122' => 'tar', 'TAR362G1338' => 'tar', 'TAR369G0590' => 'tar', 'TAR371G0824' => 'tar', 'TAR622G1429' => 'tar', 'TAR623G0734' => 'tar', 'TAR625G0441' => 'tar', 'TAR629G0976' => 'tar', 'TAR633G1195' => 'tar', 'TAR636G2660' => 'tar', 'THA.LOC104799440' => 'tha', 'THA.LOC104800966' => 'tha', 'THA.LOC104806559' => 'tha', 'THA.LOC104810765' => 'tha', 'THA.LOC104816266' => 'tha', 'THA.LOC104817419' => 'tha', 'THA.LOC104827021' => 'tha', 'Thecc.01G327400' => 'tca', 'Thecc.04G229200' => 'tca', 'Thecc.05G037400' => 'tca', 'Thecc.09G318600' => 'tca', 'Thecc.09G318700' => 'tca', 'Thhalv10006238m.g' => 'esa', 'Thhalv10014321m.g' => 'esa', 'Thhalv10014335m.g' => 'esa', 'Thhalv10015826m.g' => 'esa', 'Thhalv10017107m.g' => 'esa', 'Thhalv10017180m.g' => 'esa', 'Thhalv10029339m.g' => 'esa', 'TPR.G1699' => 'tpr', 'TPR.G23609' => 'tpr', 'TPR.G3081' => 'tpr', 'TPR.G40397' => 'tpr', 'TPR.G5522' => 'tpr', 'TPR.G5618' => 'tpr', 'TPR.G5626' => 'tpr', 'TWI09G1632' => 'twi', 'TWI23G1230' => 'twi', 'TWI53G1064' => 'twi', 'TWI59G0751' => 'twi', 'TWI74G0947' => 'twi', 'TWI77G0337' => 'twi', 'TWI79G1254' => 'twi', 'unitig_0.g2341' => 'ugi', 'unitig_26.g10006' => 'ugi', 'unitig_26.g10008' => 'ugi', 'unitig_26.g9192' => 'ugi', 'vmacro14547' => 'vma', 'vmacro15333' => 'vma', 'vmacro18743' => 'vma', 'vmacro20166' => 'vma', 'VMungo0331G0523' => 'vmu', 'VMungo0331G1202' => 'vmu', 'VMungo0720G1228' => 'vmu', 'VMungo0720G1514' => 'vmu', 'VMungo1080G0169' => 'vmu', 'VMungo1127G1475' => 'vmu', 'VMungo1383G1208' => 'vmu', 'VMungo1383G1698' => 'vmu', 'Zm00001eb012270' => 'zma', 'Zm00001eb054100' => 'zma', 'Zm00001eb063350' => 'zma', 'Zm00001eb328560' => 'zma', 'Zm00001eb342820' => 'zma', 'Zm00001eb362210' => 'zma', 'Zm00001eb397730' => 'zma', 'Zm00001eb399750' => 'zma' ) $gf_id = 'HOM05D000959' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000959' ) $data_identifier = 'HOM05D000959' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 5, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 5, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 10, 'mbi' => (int) 3, 'mco' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 2, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 3, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 11, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399750' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000959', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '622', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p07100' => 'bna', 'A03p11720' => 'bna', 'A05p08300' => 'bna', 'A05p13380' => 'bna', 'A09p54130' => 'bna', 'A10p16690' => 'bna', 'A10p16700' => 'bna', 'A10p33390' => 'bna', 'Aa31LG10G16020' => 'aar', 'Aa31LG1G11810' => 'aar', 'Aa31LG1G11830' => 'aar', 'Aa31LG1G22510' => 'aar', 'Aa31LG5G4890' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5793' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2310' => 'aag', 'Actinidia08499' => 'ach', 'Actinidia11262' => 'ach', 'Actinidia23926' => 'ach', 'Actinidia34420' => 'ach', 'Actinidia36970' => 'ach', 'Ah.02g111220' => 'amhyb', 'Ah.15g097750' => 'amhyb', 'AL4G27500' => 'aly', 'AL6G11470' => 'aly', 'AL8G35950' => 'aly', 'AL8G35960' => 'aly', 'AL8G35970' => 'aly', 'Aqoxy1G00912' => 'aox', 'Aqoxy2G02253' => 'aox', 'Aqoxy2G02411' => 'aox', 'Aqoxy5G00485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BZ66YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K8ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM4FUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6BF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HFV7XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25JBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0YNNV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MAKK6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P70IT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP2Z6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V61LZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YWP64R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3S9AI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7PGHH' => 'arhy', 'AT2G32150' => 'ath', 'AT3G62040' => 'ath', 'AT5G02230' => 'ath', 'AT5G59480' => 'ath', 'AT5G59490' => 'ath', 'ATR0332G060' => 'atr', 'ATR0559G190' => 'atr', 'ATR0693G294' => 'atr', 'Atru.chr3.3975' => 'acertr', 'Atru.chr3.3976' => 'acertr', 'Atru.chr3.3977' => 'acertr', 'Atru.chr4.2498' => 'acertr', 'Atru.chr5.838' => 'acertr', 'Atru.chr8.1990' => 'acertr', 'Atru.chr8.1991' => 'acertr', 'Atru.chr8.1992' => 'acertr', 'AUR62001759' => 'cqu', 'AUR62009545' => 'cqu', 'AUR62010474' => 'cqu', 'AUR62025820' => 'cqu', 'AUR62030422' => 'cqu', 'AUR62033605' => 'cqu', 'AUR62038615' => 'cqu', 'AUR62041347' => 'cqu', 'BcaB01g04574' => 'bca', 'BcaB02g09263' => 'bca', 'BcaB02g10453' => 'bca', 'BcaB05g22513' => 'bca', 'BcaB08g36253' => 'bca', 'BcaB08g36254' => 'bca', 'BcaC01g06519' => 'bca', 'BcaC02g11889' => 'bca', 'BcaC03g14010' => 'bca', 'BcaC03g18439' => 'bca', 'BcaC04g19765' => 'bca', 'BcaC09g48432' => 'bca', 'BcaNung07302' => 'bca', 'BolC2t06040H' => 'bol', 'BolC2t07346H' => 'bol', 'BolC3t13817H' => 'bol', 'BolC4t22625H' => 'bol', 'BolC4t23297H' => 'bol', 'BolC8t51278H' => 'bol', 'BolC9t58050H' => 'bol', 'BolC9t58051H' => 'bol', 'BolC9t60163H' => 'bol', 'BraA02t04712Z' => 'bra', 'BraA02t05791Z' => 'bra', 'BraA03t10483Z' => 'bra', 'BraA05t19795Z' => 'bra', 'BraA05t20276Z' => 'bra', 'BraA09t40827Z' => 'bra', 'BraA10t43750Z' => 'bra', 'BraA10t43751Z' => 'bra', 'BraA10t45370Z' => 'bra', 'C02p00400' => 'bna', 'C02p12460' => 'bna', 'C03p13680' => 'bna', 'C04p10270' => 'bna', 'C04p17500' => 'bna', 'C08p37010' => 'bna', 'C09p51880' => 'bna', 'C09p51890' => 'bna', 'C09p74300' => 'bna', 'CAN.G179.26' => 'can', 'CAN.G3384.1' => 'can', 'CAN.G394.68' => 'can', 'CAN.G907.13' => 'can', 'CANSAT11G0012' => 'cansat', 'CANSAT25G1586' => 'cansat', 'CANSAT35G0735' => 'cansat', 'CANSAT54G0556' => 'cansat', 'CANSAT64G0356' => 'cansat', 'CANSAT78G2042' => 'cansat', 'CARHR125920' => 'chi', 'CARHR131910' => 'chi', 'CARHR172390' => 'chi', 'CARHR211140' => 'chi', 'CARHR285850' => 'chi', 'CARHR285860' => 'chi', 'Carub.0004s1347' => 'cru', 'Carub.0004s1960' => 'cru', 'Carub.0005s2880' => 'cru', 'Carub.0006s0107' => 'cru', 'Carub.0008s2015' => 'cru', 'Carub.0008s2016' => 'cru', 'Carub.0008s2017' => 'cru', 'Ca_01315_v3' => 'car', 'Ca_05063_v3' => 'car', 'Ca_10231_v3' => 'car', 'Ca_10913_v3' => 'car', 'Ca_19156_v3' => 'car', 'Ca_23644_v3' => 'car', 'Ca_26735_v3' => 'car', 'Cc01_g13130' => 'ccan', 'Cc02_g21690' => 'ccan', 'Cc03_g03600' => 'ccan', 'Cc06_g02510' => 'ccan', 'CDE02G1265' => 'cde', 'CDE05G0415' => 'cde', 'CDE08G1082' => 'cde', 'Cfa005780' => 'cfa', 'Cfa011522' => 'cfa', 'Cfa011523' => 'cfa', 'Cfa015627' => 'cfa', 'Cfa017359' => 'cfa', 'Ciclev10005687m.g' => 'ccl', 'Ciclev10012173m.g' => 'ccl', 'Ciclev10021621m.g' => 'ccl', 'Ciclev10028968m.g' => 'ccl', 'Ciclev10029907m.g' => 'ccl', 'CiPaw.01G164800' => 'cil', 'CiPaw.07G083700' => 'cil', 'CiPaw.07G127000' => 'cil', 'CiPaw.07G136900' => 'cil', 'CiPaw.08G081700' => 'cil', 'CiPaw.09G194600' => 'cil', 'CiPaw.10G146500' => 'cil', 'CiPaw.13G091500' => 'cil', 'CiPaw.13G091600' => 'cil', 'ClCG00G003390' => 'cla', 'ClCG01G007220' => 'cla', 'ClCG03G001370' => 'cla', 'ClCG04G008100' => 'cla', 'ClCG06G006110' => 'cla', 'ClCG06G006130' => 'cla', 'ClCG10G021210' => 'cla', 'COL.COLO4_07648' => 'col', 'COL.COLO4_07650' => 'col', 'COL.COLO4_07651' => 'col', 'COL.COLO4_14780' => 'col', 'COL.COLO4_18546' => 'col', 'COL.COLO4_18547' => 'col', 'COL.COLO4_23103' => 'col', 'COL.COLO4_30419' => 'col', 'COL.COLO4_34232' => 'col', 'Cpa.g.sc169.20' => 'cpa', 'Cpa.g.sc57.45' => 'cpa', 'Cpa.g.sc58.124' => 'cpa', 'Cpa.g.sc58.125' => 'cpa', 'Cpa.g.sc81.118' => 'cpa', 'Cpa.g.sc81.119' => 'cpa', 'Cre12.g524700' => 'cre', 'CsaV3_1G034430' => 'csa', 'CsaV3_1G034440' => 'csa', 'CsaV3_1G034450' => 'csa', 'CsaV3_3G034830' => 'csa', 'CsaV3_4G025090' => 'csa', 'CsaV3_5G018660' => 'csa', 'CsaV3_6G038160' => 'csa', 'CSS0003447' => 'camsi', 'CSS0017840' => 'camsi', 'CSS0019260' => 'camsi', 'CSS0040375' => 'camsi', 'CSS0042533' => 'camsi', 'DCAR_005960' => 'dca', 'DCAR_012104' => 'dca', 'DCAR_012105' => 'dca', 'DCAR_012293' => 'dca', 'DCAR_015632' => 'dca', 'DCAR_024602' => 'dca', 'DCAR_028752' => 'dca', 'Dinv06261' => 'din', 'Dinv13982' => 'din', 'Dinv17029' => 'din', 'Dinv18463' => 'din', 'Dinv33181' => 'din', 'Dinv35585' => 'din', 'Dinv37161' => 'din', 'Dinv42977' => 'din', 'Dinv43122' => 'din', 'Dinv44517' => 'din', 'Duzib093G0256' => 'dzi', 'Duzib106G1254' => 'dzi', 'Duzib128G1789' => 'dzi', 'Duzib133G0633' => 'dzi', 'Duzib138G0510' => 'dzi', 'Duzib150G1084' => 'dzi', 'Duzib168G0488' => 'dzi', 'Duzib168G1523' => 'dzi', 'Duzib170G0133' => 'dzi', 'ECA234G1433' => 'eca', 'ECA236G1432' => 'eca', 'ECA236G2256' => 'eca', 'ECA236G2365' => 'eca', 'ECA236G4830' => 'eca', 'ECA248G1505' => 'eca', 'EL10Ac3g06431' => 'bvu', 'EL10Ac5g12577' => 'bvu', 'EL10Ac6g13533' => 'bvu', 'EL10Ac7g16045' => 'bvu', 'Eucgr.A01281' => 'egr', 'Eucgr.B02326' => 'egr', 'Eucgr.H03532' => 'egr', 'Eucgr.K00553' => 'egr', 'Eucgr.K03116' => 'egr', 'FAN02G3963' => 'fan', 'FAN05G0438' => 'fan', 'FAN09G2434' => 'fan', 'FAN12G3984' => 'fan', 'FAN14G0798' => 'fan', 'FAN17G0652' => 'fan', 'FAN19G1988' => 'fan', 'FAN22G0632' => 'fan', 'FAN23G0387' => 'fan', 'FAN26G1323' => 'fan', 'FAN28G0666' => 'fan', 'FvH4_1g26080' => 'fve', 'FvH4_3g36780' => 'fve', 'FvH4_4g15270' => 'fve', 'FvH4_6g13490' => 'fve', 'Glyma.01G098700' => 'gma', 'Glyma.03G065900' => 'gma', 'Glyma.03G073754' => 'gma', 'Glyma.03G073758' => 'gma', 'Glyma.03G083200' => 'gma', 'Glyma.03G225500' => 'gma', 'Glyma.05G037766' => 'gma', 'Glyma.07G133500' => 'gma', 'Glyma.10G139400' => 'gma', 'Glyma.10G248900' => 'gma', 'Glyma.11G137800' => 'gma', 'Glyma.12G061300' => 'gma', 'Glyma.13G337900' => 'gma', 'Glyma.15G036600' => 'gma', 'Glyma.18G182800' => 'gma', 'Glyma.19G222500' => 'gma', 'Glyma.20G144800' => 'gma', 'Gohir.A01G222000' => 'ghi', 'Gohir.A03G044000' => 'ghi', 'Gohir.A03G044100' => 'ghi', 'Gohir.A04G083100' => 'ghi', 'Gohir.A07G127200' => 'ghi', 'Gohir.A07G132400' => 'ghi', 'Gohir.A08G000700' => 'ghi', 'Gohir.A11G327300' => 'ghi', 'Gohir.D01G211500' => 'ghi', 'Gohir.D03G123400' => 'ghi', 'Gohir.D03G123500' => 'ghi', 'Gohir.D04G121800' => 'ghi', 'Gohir.D07G131500' => 'ghi', 'Gohir.D07G136600' => 'ghi', 'Gohir.D08G011600' => 'ghi', 'Gohir.D11G346200' => 'ghi', 'Gorai.001G142800' => 'gra', 'Gorai.001G148700' => 'gra', 'Gorai.002G257300' => 'gra', 'Gorai.003G130000' => 'gra', 'Gorai.003G130100' => 'gra', 'Gorai.004G005300' => 'gra', 'Gorai.007G376500' => 'gra', 'Gorai.012G104700' => 'gra', 'GSVIVG01017946001' => 'vvi', 'GSVIVG01024928001' => 'vvi', 'GSVIVG01028227001' => 'vvi', 'GSVIVG01034151001' => 'vvi', 'HanXRQChr05g0135031' => 'han', 'HanXRQChr05g0135041' => 'han', 'HanXRQChr05g0140021' => 'han', 'HanXRQChr06g0178981' => 'han', 'HanXRQChr07g0188251' => 'han', 'HanXRQChr08g0235311' => 'han', 'HanXRQChr09g0271011' => 'han', 'HanXRQChr10g0293321' => 'han', 'HanXRQChr13g0388171' => 'han', 'Haze_00916' => 'cav', 'Haze_05063' => 'cav', 'Haze_20814' => 'cav', 'Haze_24128' => 'cav', 'Hma1.2p1_0745F.1_g212010' => 'hma', 'Hma1.2p1_0757F.1_g213260' => 'hma', 'Hma1.2p1_0936F.1_g238840' => 'hma', 'Hma1.2p1_1735F.1_g299890' => 'hma', 'Hma1.2p1_1861F.1_g305685' => 'hma', 'HPP92_003397' => 'vpl', 'HPP92_012597' => 'vpl', 'HPP92_015520' => 'vpl', 'HPP92_015539' => 'vpl', 'HPP92_020373' => 'vpl', 'Hund04938' => 'sun', 'Hund10677' => 'sun', 'Hund11033' => 'sun', 'Hund12155' => 'sun', 'Lalb_Chr01g0022551' => 'lal', 'Lalb_Chr03g0042341' => 'lal', 'Lalb_Chr07g0192931' => 'lal', 'Lalb_Chr12g0209551' => 'lal', 'Lalb_Chr19g0125251' => 'lal', 'Lalb_Chr19g0137891' => 'lal', 'Lalb_Chr21g0304641' => 'lal', 'Lalb_Chr21g0309881' => 'lal', 'Lj1A5T12' => 'lonja', 'Lj1C148G10' => 'lonja', 'Lj2A93T83' => 'lonja', 'Lj3A738G68' => 'lonja', 'Lj3C966T1' => 'lonja', 'Lj3g0018958' => 'lja', 'Lj3g0021831' => 'lja', 'Lj3g0025443' => 'lja', 'Lj4g0026809' => 'lja', 'Lj5g0012558' => 'lja', 'Lj5g0021586' => 'lja', 'Lsat_1_v5_gn_5_156840' => 'lsa', 'Lsat_1_v5_gn_8_73460' => 'lsa', 'Lsat_1_v5_gn_8_73481' => 'lsa', 'Lsat_1_v5_gn_9_31601' => 'lsa', 'Lsat_1_v5_gn_9_77320' => 'lsa', 'Manes.01G171300' => 'mes', 'Manes.01G171400' => 'mes', 'Manes.01G236100' => 'mes', 'Manes.02G130500' => 'mes', 'Manes.02G130600' => 'mes', 'Manes.03G180200' => 'mes', 'Manes.05G007000' => 'mes', 'Manes.08G084400' => 'mes', 'Manes.09G092600' => 'mes', 'Manes.15G027900' => 'mes', 'MBI04_g40948_MAGBIO' => 'mbi', 'MBI14_g12123_MAGBIO' => 'mbi', 'MBI18_g28915_MAGBIO' => 'mbi', 'MCO09G053' => 'mco', 'MCO11G782' => 'mco', 'MCO15G215' => 'mco', 'MD03G1088500' => 'mdo', 'MD03G1088600' => 'mdo', 'MD04G1130800' => 'mdo', 'MD09G1291700' => 'mdo', 'MD11G1097500' => 'mdo', 'MD11G1097600' => 'mdo', 'MD12G1143900' => 'mdo', 'MD13G1191400' => 'mdo', 'MD16G1191500' => 'mdo', 'Medtr1g085570' => 'mtr', 'Medtr1g104610' => 'mtr', 'Medtr2g097520' => 'mtr', 'Medtr4g021800' => 'mtr', 'Medtr4g021825' => 'mtr', 'Medtr4g064270' => 'mtr', 'Medtr4g064380' => 'mtr', 'Medtr7g062150' => 'mtr', 'MELO3C003138.2' => 'cme', 'MELO3C005187.2' => 'cme', 'MELO3C009252.2' => 'cme', 'MELO3C014481.2' => 'cme', 'MELO3C020616.2' => 'cme', 'MELO3C020617.2' => 'cme', 'MELO3C020618.2' => 'cme', 'Migut.G00328' => 'egut', 'Migut.J00320' => 'egut', 'Migut.L01000' => 'egut', 'Migut.L01953' => 'egut', 'MSTRG.10253' => 'ama', 'MSTRG.19077' => 'ama', 'MSTRG.26780' => 'ama', 'MSTRG.4023' => 'ama', 'MSTRG.5655' => 'ama', 'MSTRG.9992' => 'ama', 'Nitab4.5_0000043g0310' => 'nta', 'Nitab4.5_0000463g0080' => 'nta', 'Nitab4.5_0000705g0170' => 'nta', 'Nitab4.5_0001326g0060' => 'nta', 'Nitab4.5_0001628g0030' => 'nta', 'Nitab4.5_0002103g0110' => 'nta', 'Nitab4.5_0002946g0030' => 'nta', 'Nitab4.5_0004639g0030' => 'nta', 'Nn2g11149' => 'nnu', 'Nn2g13389' => 'nnu', 'Nn4g25326' => 'nnu', 'Nn4g26290' => 'nnu', 'Nn5g29865' => 'nnu', 'Oeu004163.1' => 'oeu', 'Oeu006901.1' => 'oeu', 'Oeu010096.1' => 'oeu', 'Oeu024340.1' => 'oeu', 'Oeu048369.1' => 'oeu', 'Os01g0973000' => 'osa', 'Os03g0273800' => 'osa', 'Os03g0701200' => 'osa', 'Os03g0834050' => 'osa', 'Os07g0634400' => 'osa', 'Peaxi162Scf00092g01414' => 'pax', 'Peaxi162Scf00165g00818' => 'pax', 'Peaxi162Scf00309g00516' => 'pax', 'Peaxi162Scf00774g00218' => 'pax', 'PGR004G1824' => 'pgr', 'PGR004G2606' => 'pgr', 'PGR031G2716' => 'pgr', 'PGR102G2460' => 'pgr', 'PGR142G2599' => 'pgr', 'PGSC0003DMG400000843' => 'stu', 'PGSC0003DMG400008829' => 'stu', 'PGSC0003DMG400030418' => 'stu', 'PGSC0003DMG400031834' => 'stu', 'PGSC0003DMG401028300' => 'stu', 'PGSC0003DMG402028300' => 'stu', 'Phvul.001G219300' => 'pvu', 'Phvul.007G056000' => 'pvu', 'Phvul.007G208000' => 'pvu', 'Phvul.008G119500' => 'pvu', 'Phvul.010G011200' => 'pvu', 'Phvul.010G014800' => 'pvu', 'Phvul.011G062900' => 'pvu', 'Phvul.L007043' => 'pvu', 'Potri.001G242300' => 'ptr', 'Potri.002G185300' => 'ptr', 'Potri.006G086900' => 'ptr', 'Potri.008G151700' => 'ptr', 'Potri.009G033500' => 'ptr', 'Potri.010G089300' => 'ptr', 'Potri.014G110800' => 'ptr', 'Pp3c27_8130' => 'ppa', 'Pp3c6_27410' => 'ppa', 'PRCOL_00001659' => 'pco', 'PRCOL_00001927' => 'pco', 'PRCOL_00003649' => 'pco', 'Prupe.1G011600' => 'ppe', 'Prupe.3G000800' => 'ppe', 'Prupe.3G001100' => 'ppe', 'Prupe.6G072700' => 'ppe', 'Prupe.6G072800' => 'ppe', 'Prupe.6G257300' => 'ppe', 'Prupe.8G033000' => 'ppe', 'Psat0s2633g0080' => 'psa', 'Psat0s3396g0080' => 'psa', 'Psat0s3396g0200' => 'psa', 'Psat3g139080' => 'psa', 'Psat5g285080' => 'psa', 'Psat6g157760' => 'psa', 'Psat6g208440' => 'psa', 'Psat7g215320' => 'psa', 'Psat7g215400' => 'psa', 'Psat7g235600' => 'psa', 'Psat7g235760' => 'psa', 'PSO063G4603' => 'pso', 'PSO210G0182' => 'pso', 'PSO210G0196' => 'pso', 'PSO339G0394' => 'pso', 'PSO339G4127' => 'pso', 'PSO513G0064' => 'pso', 'PSO761G0079' => 'pso', 'QL01p031003' => 'qlo', 'QL01p031078' => 'qlo', 'QL06p003004' => 'qlo', 'QL07p048731' => 'qlo', 'QL09p037427' => 'qlo', 'RcHm_v2.0_Chr3g0466361' => 'rch', 'RcHm_v2.0_Chr3g0485571' => 'rch', 'RcHm_v2.0_Chr4g0416551' => 'rch', 'RcHm_v2.0_Chr5g0065831' => 'rch', 'Rhsim01G0230500' => 'rsi', 'Rhsim05G0194000' => 'rsi', 'Rhsim08G0250400' => 'rsi', 'Sabra02G0131000' => 'sbr', 'Sabra06G0066300' => 'sbr', 'Sabra08G0115500' => 'sbr', 'Sabra09G0023900' => 'sbr', 'Sabra10G0054000' => 'sbr', 'Sabra14G0081500' => 'sbr', 'Sabra16G0147100' => 'sbr', 'SalBow2G2957' => 'sbo', 'SalBow4G3320' => 'sbo', 'SalBow8G1894' => 'sbo', 'Sc07g0007950' => 'sci', 'Sc12g0001360' => 'sci', 'Sc13g0004330' => 'sci', 'Sc20g0005010' => 'sci', 'Sed0000361' => 'sed', 'Sed0001706' => 'sed', 'Sed0002422' => 'sed', 'Sed0004029' => 'sed', 'Sed0004602' => 'sed', 'Sed0004943' => 'sed', 'Sed0008646' => 'sed', 'Sed0023313' => 'sed', 'Sed0024843' => 'sed', 'SEGI_00081' => 'sgi', 'SEGI_00947' => 'sgi', 'SEGI_04046' => 'sgi', 'SEGI_06880' => 'sgi', 'SEGI_09736' => 'sgi', 'SEGI_12741' => 'sgi', 'SEGI_14530' => 'sgi', 'SEGI_20705' => 'sgi', 'SEGI_26088' => 'sgi', 'SEGI_28323' => 'sgi', 'SEGI_33343' => 'sgi', 'SGA_v2.0_scaffold126G33775' => 'sas', 'SGA_v2.0_scaffold2G01337' => 'sas', 'SGA_v2.0_scaffold38G15006' => 'sas', 'SGA_v2.0_scaffold39G15264' => 'sas', 'SGA_v2.0_scaffold453G51880' => 'sas', 'SHI12696' => 'shi', 'SMO367G1096' => 'smo', 'Solyc01g068630.3' => 'sly', 'Solyc05g011880.3' => 'sly', 'Solyc06g076300.3' => 'sly', 'Solyc09g010940.4' => 'sly', 'Solyc09g075890.3' => 'sly', 'Sopen01g030560' => 'spe', 'Sopen05g006630' => 'spe', 'Sopen06g032720' => 'spe', 'Sopen09g005660' => 'spe', 'Sopen09g030690' => 'spe', 'Sp4g14540' => 'spa', 'Sp4g20030' => 'spa', 'Sp5g01320' => 'spa', 'Sp6g21170' => 'spa', 'Sp6g21180' => 'spa', 'Sp6g21190' => 'spa', 'Sp6g40220' => 'spa', 'TAR362G0122' => 'tar', 'TAR362G1338' => 'tar', 'TAR369G0590' => 'tar', 'TAR371G0824' => 'tar', 'TAR622G1429' => 'tar', 'TAR623G0734' => 'tar', 'TAR625G0441' => 'tar', 'TAR629G0976' => 'tar', 'TAR633G1195' => 'tar', 'TAR636G2660' => 'tar', 'THA.LOC104799440' => 'tha', 'THA.LOC104800966' => 'tha', 'THA.LOC104806559' => 'tha', 'THA.LOC104810765' => 'tha', 'THA.LOC104816266' => 'tha', 'THA.LOC104817419' => 'tha', 'THA.LOC104827021' => 'tha', 'Thecc.01G327400' => 'tca', 'Thecc.04G229200' => 'tca', 'Thecc.05G037400' => 'tca', 'Thecc.09G318600' => 'tca', 'Thecc.09G318700' => 'tca', 'Thhalv10006238m.g' => 'esa', 'Thhalv10014321m.g' => 'esa', 'Thhalv10014335m.g' => 'esa', 'Thhalv10015826m.g' => 'esa', 'Thhalv10017107m.g' => 'esa', 'Thhalv10017180m.g' => 'esa', 'Thhalv10029339m.g' => 'esa', 'TPR.G1699' => 'tpr', 'TPR.G23609' => 'tpr', 'TPR.G3081' => 'tpr', 'TPR.G40397' => 'tpr', 'TPR.G5522' => 'tpr', 'TPR.G5618' => 'tpr', 'TPR.G5626' => 'tpr', 'TWI09G1632' => 'twi', 'TWI23G1230' => 'twi', 'TWI53G1064' => 'twi', 'TWI59G0751' => 'twi', 'TWI74G0947' => 'twi', 'TWI77G0337' => 'twi', 'TWI79G1254' => 'twi', 'unitig_0.g2341' => 'ugi', 'unitig_26.g10006' => 'ugi', 'unitig_26.g10008' => 'ugi', 'unitig_26.g9192' => 'ugi', 'vmacro14547' => 'vma', 'vmacro15333' => 'vma', 'vmacro18743' => 'vma', 'vmacro20166' => 'vma', 'VMungo0331G0523' => 'vmu', 'VMungo0331G1202' => 'vmu', 'VMungo0720G1228' => 'vmu', 'VMungo0720G1514' => 'vmu', 'VMungo1080G0169' => 'vmu', 'VMungo1127G1475' => 'vmu', 'VMungo1383G1208' => 'vmu', 'VMungo1383G1698' => 'vmu', 'Zm00001eb012270' => 'zma', 'Zm00001eb054100' => 'zma', 'Zm00001eb063350' => 'zma', 'Zm00001eb328560' => 'zma', 'Zm00001eb342820' => 'zma', 'Zm00001eb362210' => 'zma', 'Zm00001eb397730' => 'zma', 'Zm00001eb399750' => 'zma' ), 'gf_id' => 'HOM05D000959', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000959' ), 'data_identifier' => 'HOM05D000959', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000959', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '622', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p07100' => 'bna', 'A03p11720' => 'bna', 'A05p08300' => 'bna', 'A05p13380' => 'bna', 'A09p54130' => 'bna', 'A10p16690' => 'bna', 'A10p16700' => 'bna', 'A10p33390' => 'bna', 'Aa31LG10G16020' => 'aar', 'Aa31LG1G11810' => 'aar', 'Aa31LG1G11830' => 'aar', 'Aa31LG1G22510' => 'aar', 'Aa31LG5G4890' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5793' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2310' => 'aag', 'Actinidia08499' => 'ach', 'Actinidia11262' => 'ach', 'Actinidia23926' => 'ach', 'Actinidia34420' => 'ach', 'Actinidia36970' => 'ach', 'Ah.02g111220' => 'amhyb', 'Ah.15g097750' => 'amhyb', 'AL4G27500' => 'aly', 'AL6G11470' => 'aly', 'AL8G35950' => 'aly', 'AL8G35960' => 'aly', 'AL8G35970' => 'aly', 'Aqoxy1G00912' => 'aox', 'Aqoxy2G02253' => 'aox', 'Aqoxy2G02411' => 'aox', 'Aqoxy5G00485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BZ66YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K8ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM4FUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6BF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HFV7XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25JBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0YNNV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MAKK6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P70IT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP2Z6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V61LZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YWP64R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3S9AI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7PGHH' => 'arhy', 'AT2G32150' => 'ath', 'AT3G62040' => 'ath', 'AT5G02230' => 'ath', 'AT5G59480' => 'ath', 'AT5G59490' => 'ath', 'ATR0332G060' => 'atr', 'ATR0559G190' => 'atr', 'ATR0693G294' => 'atr', 'Atru.chr3.3975' => 'acertr', 'Atru.chr3.3976' => 'acertr', 'Atru.chr3.3977' => 'acertr', 'Atru.chr4.2498' => 'acertr', 'Atru.chr5.838' => 'acertr', 'Atru.chr8.1990' => 'acertr', 'Atru.chr8.1991' => 'acertr', 'Atru.chr8.1992' => 'acertr', 'AUR62001759' => 'cqu', 'AUR62009545' => 'cqu', 'AUR62010474' => 'cqu', 'AUR62025820' => 'cqu', 'AUR62030422' => 'cqu', 'AUR62033605' => 'cqu', 'AUR62038615' => 'cqu', 'AUR62041347' => 'cqu', 'BcaB01g04574' => 'bca', 'BcaB02g09263' => 'bca', 'BcaB02g10453' => 'bca', 'BcaB05g22513' => 'bca', 'BcaB08g36253' => 'bca', 'BcaB08g36254' => 'bca', 'BcaC01g06519' => 'bca', 'BcaC02g11889' => 'bca', 'BcaC03g14010' => 'bca', 'BcaC03g18439' => 'bca', 'BcaC04g19765' => 'bca', 'BcaC09g48432' => 'bca', 'BcaNung07302' => 'bca', 'BolC2t06040H' => 'bol', 'BolC2t07346H' => 'bol', 'BolC3t13817H' => 'bol', 'BolC4t22625H' => 'bol', 'BolC4t23297H' => 'bol', 'BolC8t51278H' => 'bol', 'BolC9t58050H' => 'bol', 'BolC9t58051H' => 'bol', 'BolC9t60163H' => 'bol', 'BraA02t04712Z' => 'bra', 'BraA02t05791Z' => 'bra', 'BraA03t10483Z' => 'bra', 'BraA05t19795Z' => 'bra', 'BraA05t20276Z' => 'bra', 'BraA09t40827Z' => 'bra', 'BraA10t43750Z' => 'bra', 'BraA10t43751Z' => 'bra', 'BraA10t45370Z' => 'bra', 'C02p00400' => 'bna', 'C02p12460' => 'bna', 'C03p13680' => 'bna', 'C04p10270' => 'bna', 'C04p17500' => 'bna', 'C08p37010' => 'bna', 'C09p51880' => 'bna', 'C09p51890' => 'bna', 'C09p74300' => 'bna', 'CAN.G179.26' => 'can', 'CAN.G3384.1' => 'can', 'CAN.G394.68' => 'can', 'CAN.G907.13' => 'can', 'CANSAT11G0012' => 'cansat', 'CANSAT25G1586' => 'cansat', 'CANSAT35G0735' => 'cansat', 'CANSAT54G0556' => 'cansat', 'CANSAT64G0356' => 'cansat', 'CANSAT78G2042' => 'cansat', 'CARHR125920' => 'chi', 'CARHR131910' => 'chi', 'CARHR172390' => 'chi', 'CARHR211140' => 'chi', 'CARHR285850' => 'chi', 'CARHR285860' => 'chi', 'Carub.0004s1347' => 'cru', 'Carub.0004s1960' => 'cru', 'Carub.0005s2880' => 'cru', 'Carub.0006s0107' => 'cru', 'Carub.0008s2015' => 'cru', 'Carub.0008s2016' => 'cru', 'Carub.0008s2017' => 'cru', 'Ca_01315_v3' => 'car', 'Ca_05063_v3' => 'car', 'Ca_10231_v3' => 'car', 'Ca_10913_v3' => 'car', 'Ca_19156_v3' => 'car', 'Ca_23644_v3' => 'car', 'Ca_26735_v3' => 'car', 'Cc01_g13130' => 'ccan', 'Cc02_g21690' => 'ccan', 'Cc03_g03600' => 'ccan', 'Cc06_g02510' => 'ccan', 'CDE02G1265' => 'cde', 'CDE05G0415' => 'cde', 'CDE08G1082' => 'cde', 'Cfa005780' => 'cfa', 'Cfa011522' => 'cfa', 'Cfa011523' => 'cfa', 'Cfa015627' => 'cfa', 'Cfa017359' => 'cfa', 'Ciclev10005687m.g' => 'ccl', 'Ciclev10012173m.g' => 'ccl', 'Ciclev10021621m.g' => 'ccl', 'Ciclev10028968m.g' => 'ccl', 'Ciclev10029907m.g' => 'ccl', 'CiPaw.01G164800' => 'cil', 'CiPaw.07G083700' => 'cil', 'CiPaw.07G127000' => 'cil', 'CiPaw.07G136900' => 'cil', 'CiPaw.08G081700' => 'cil', 'CiPaw.09G194600' => 'cil', 'CiPaw.10G146500' => 'cil', 'CiPaw.13G091500' => 'cil', 'CiPaw.13G091600' => 'cil', 'ClCG00G003390' => 'cla', 'ClCG01G007220' => 'cla', 'ClCG03G001370' => 'cla', 'ClCG04G008100' => 'cla', 'ClCG06G006110' => 'cla', 'ClCG06G006130' => 'cla', 'ClCG10G021210' => 'cla', 'COL.COLO4_07648' => 'col', 'COL.COLO4_07650' => 'col', 'COL.COLO4_07651' => 'col', 'COL.COLO4_14780' => 'col', 'COL.COLO4_18546' => 'col', 'COL.COLO4_18547' => 'col', 'COL.COLO4_23103' => 'col', 'COL.COLO4_30419' => 'col', 'COL.COLO4_34232' => 'col', 'Cpa.g.sc169.20' => 'cpa', 'Cpa.g.sc57.45' => 'cpa', 'Cpa.g.sc58.124' => 'cpa', 'Cpa.g.sc58.125' => 'cpa', 'Cpa.g.sc81.118' => 'cpa', 'Cpa.g.sc81.119' => 'cpa', 'Cre12.g524700' => 'cre', 'CsaV3_1G034430' => 'csa', 'CsaV3_1G034440' => 'csa', 'CsaV3_1G034450' => 'csa', 'CsaV3_3G034830' => 'csa', 'CsaV3_4G025090' => 'csa', 'CsaV3_5G018660' => 'csa', 'CsaV3_6G038160' => 'csa', 'CSS0003447' => 'camsi', 'CSS0017840' => 'camsi', 'CSS0019260' => 'camsi', 'CSS0040375' => 'camsi', 'CSS0042533' => 'camsi', 'DCAR_005960' => 'dca', 'DCAR_012104' => 'dca', 'DCAR_012105' => 'dca', 'DCAR_012293' => 'dca', 'DCAR_015632' => 'dca', 'DCAR_024602' => 'dca', 'DCAR_028752' => 'dca', 'Dinv06261' => 'din', 'Dinv13982' => 'din', 'Dinv17029' => 'din', 'Dinv18463' => 'din', 'Dinv33181' => 'din', 'Dinv35585' => 'din', 'Dinv37161' => 'din', 'Dinv42977' => 'din', 'Dinv43122' => 'din', 'Dinv44517' => 'din', 'Duzib093G0256' => 'dzi', 'Duzib106G1254' => 'dzi', 'Duzib128G1789' => 'dzi', 'Duzib133G0633' => 'dzi', 'Duzib138G0510' => 'dzi', 'Duzib150G1084' => 'dzi', 'Duzib168G0488' => 'dzi', 'Duzib168G1523' => 'dzi', 'Duzib170G0133' => 'dzi', 'ECA234G1433' => 'eca', 'ECA236G1432' => 'eca', 'ECA236G2256' => 'eca', 'ECA236G2365' => 'eca', 'ECA236G4830' => 'eca', 'ECA248G1505' => 'eca', 'EL10Ac3g06431' => 'bvu', 'EL10Ac5g12577' => 'bvu', 'EL10Ac6g13533' => 'bvu', 'EL10Ac7g16045' => 'bvu', 'Eucgr.A01281' => 'egr', 'Eucgr.B02326' => 'egr', 'Eucgr.H03532' => 'egr', 'Eucgr.K00553' => 'egr', 'Eucgr.K03116' => 'egr', 'FAN02G3963' => 'fan', 'FAN05G0438' => 'fan', 'FAN09G2434' => 'fan', 'FAN12G3984' => 'fan', 'FAN14G0798' => 'fan', 'FAN17G0652' => 'fan', 'FAN19G1988' => 'fan', 'FAN22G0632' => 'fan', 'FAN23G0387' => 'fan', 'FAN26G1323' => 'fan', 'FAN28G0666' => 'fan', 'FvH4_1g26080' => 'fve', 'FvH4_3g36780' => 'fve', 'FvH4_4g15270' => 'fve', 'FvH4_6g13490' => 'fve', 'Glyma.01G098700' => 'gma', 'Glyma.03G065900' => 'gma', 'Glyma.03G073754' => 'gma', 'Glyma.03G073758' => 'gma', 'Glyma.03G083200' => 'gma', 'Glyma.03G225500' => 'gma', 'Glyma.05G037766' => 'gma', 'Glyma.07G133500' => 'gma', 'Glyma.10G139400' => 'gma', 'Glyma.10G248900' => 'gma', 'Glyma.11G137800' => 'gma', 'Glyma.12G061300' => 'gma', 'Glyma.13G337900' => 'gma', 'Glyma.15G036600' => 'gma', 'Glyma.18G182800' => 'gma', 'Glyma.19G222500' => 'gma', 'Glyma.20G144800' => 'gma', 'Gohir.A01G222000' => 'ghi', 'Gohir.A03G044000' => 'ghi', 'Gohir.A03G044100' => 'ghi', 'Gohir.A04G083100' => 'ghi', 'Gohir.A07G127200' => 'ghi', 'Gohir.A07G132400' => 'ghi', 'Gohir.A08G000700' => 'ghi', 'Gohir.A11G327300' => 'ghi', 'Gohir.D01G211500' => 'ghi', 'Gohir.D03G123400' => 'ghi', 'Gohir.D03G123500' => 'ghi', 'Gohir.D04G121800' => 'ghi', 'Gohir.D07G131500' => 'ghi', 'Gohir.D07G136600' => 'ghi', 'Gohir.D08G011600' => 'ghi', 'Gohir.D11G346200' => 'ghi', 'Gorai.001G142800' => 'gra', 'Gorai.001G148700' => 'gra', 'Gorai.002G257300' => 'gra', 'Gorai.003G130000' => 'gra', 'Gorai.003G130100' => 'gra', 'Gorai.004G005300' => 'gra', 'Gorai.007G376500' => 'gra', 'Gorai.012G104700' => 'gra', 'GSVIVG01017946001' => 'vvi', 'GSVIVG01024928001' => 'vvi', 'GSVIVG01028227001' => 'vvi', 'GSVIVG01034151001' => 'vvi', 'HanXRQChr05g0135031' => 'han', 'HanXRQChr05g0135041' => 'han', 'HanXRQChr05g0140021' => 'han', 'HanXRQChr06g0178981' => 'han', 'HanXRQChr07g0188251' => 'han', 'HanXRQChr08g0235311' => 'han', 'HanXRQChr09g0271011' => 'han', 'HanXRQChr10g0293321' => 'han', 'HanXRQChr13g0388171' => 'han', 'Haze_00916' => 'cav', 'Haze_05063' => 'cav', 'Haze_20814' => 'cav', 'Haze_24128' => 'cav', 'Hma1.2p1_0745F.1_g212010' => 'hma', 'Hma1.2p1_0757F.1_g213260' => 'hma', 'Hma1.2p1_0936F.1_g238840' => 'hma', 'Hma1.2p1_1735F.1_g299890' => 'hma', 'Hma1.2p1_1861F.1_g305685' => 'hma', 'HPP92_003397' => 'vpl', 'HPP92_012597' => 'vpl', 'HPP92_015520' => 'vpl', 'HPP92_015539' => 'vpl', 'HPP92_020373' => 'vpl', 'Hund04938' => 'sun', 'Hund10677' => 'sun', 'Hund11033' => 'sun', 'Hund12155' => 'sun', 'Lalb_Chr01g0022551' => 'lal', 'Lalb_Chr03g0042341' => 'lal', 'Lalb_Chr07g0192931' => 'lal', 'Lalb_Chr12g0209551' => 'lal', 'Lalb_Chr19g0125251' => 'lal', 'Lalb_Chr19g0137891' => 'lal', 'Lalb_Chr21g0304641' => 'lal', 'Lalb_Chr21g0309881' => 'lal', 'Lj1A5T12' => 'lonja', 'Lj1C148G10' => 'lonja', 'Lj2A93T83' => 'lonja', 'Lj3A738G68' => 'lonja', 'Lj3C966T1' => 'lonja', 'Lj3g0018958' => 'lja', 'Lj3g0021831' => 'lja', 'Lj3g0025443' => 'lja', 'Lj4g0026809' => 'lja', 'Lj5g0012558' => 'lja', 'Lj5g0021586' => 'lja', 'Lsat_1_v5_gn_5_156840' => 'lsa', 'Lsat_1_v5_gn_8_73460' => 'lsa', 'Lsat_1_v5_gn_8_73481' => 'lsa', 'Lsat_1_v5_gn_9_31601' => 'lsa', 'Lsat_1_v5_gn_9_77320' => 'lsa', 'Manes.01G171300' => 'mes', 'Manes.01G171400' => 'mes', 'Manes.01G236100' => 'mes', 'Manes.02G130500' => 'mes', 'Manes.02G130600' => 'mes', 'Manes.03G180200' => 'mes', 'Manes.05G007000' => 'mes', 'Manes.08G084400' => 'mes', 'Manes.09G092600' => 'mes', 'Manes.15G027900' => 'mes', 'MBI04_g40948_MAGBIO' => 'mbi', 'MBI14_g12123_MAGBIO' => 'mbi', 'MBI18_g28915_MAGBIO' => 'mbi', 'MCO09G053' => 'mco', 'MCO11G782' => 'mco', 'MCO15G215' => 'mco', 'MD03G1088500' => 'mdo', 'MD03G1088600' => 'mdo', 'MD04G1130800' => 'mdo', 'MD09G1291700' => 'mdo', 'MD11G1097500' => 'mdo', 'MD11G1097600' => 'mdo', 'MD12G1143900' => 'mdo', 'MD13G1191400' => 'mdo', 'MD16G1191500' => 'mdo', 'Medtr1g085570' => 'mtr', 'Medtr1g104610' => 'mtr', 'Medtr2g097520' => 'mtr', 'Medtr4g021800' => 'mtr', 'Medtr4g021825' => 'mtr', 'Medtr4g064270' => 'mtr', 'Medtr4g064380' => 'mtr', 'Medtr7g062150' => 'mtr', 'MELO3C003138.2' => 'cme', 'MELO3C005187.2' => 'cme', 'MELO3C009252.2' => 'cme', 'MELO3C014481.2' => 'cme', 'MELO3C020616.2' => 'cme', 'MELO3C020617.2' => 'cme', 'MELO3C020618.2' => 'cme', 'Migut.G00328' => 'egut', 'Migut.J00320' => 'egut', 'Migut.L01000' => 'egut', 'Migut.L01953' => 'egut', 'MSTRG.10253' => 'ama', 'MSTRG.19077' => 'ama', 'MSTRG.26780' => 'ama', 'MSTRG.4023' => 'ama', 'MSTRG.5655' => 'ama', 'MSTRG.9992' => 'ama', 'Nitab4.5_0000043g0310' => 'nta', 'Nitab4.5_0000463g0080' => 'nta', 'Nitab4.5_0000705g0170' => 'nta', 'Nitab4.5_0001326g0060' => 'nta', 'Nitab4.5_0001628g0030' => 'nta', 'Nitab4.5_0002103g0110' => 'nta', 'Nitab4.5_0002946g0030' => 'nta', 'Nitab4.5_0004639g0030' => 'nta', 'Nn2g11149' => 'nnu', 'Nn2g13389' => 'nnu', 'Nn4g25326' => 'nnu', 'Nn4g26290' => 'nnu', 'Nn5g29865' => 'nnu', 'Oeu004163.1' => 'oeu', 'Oeu006901.1' => 'oeu', 'Oeu010096.1' => 'oeu', 'Oeu024340.1' => 'oeu', 'Oeu048369.1' => 'oeu', 'Os01g0973000' => 'osa', 'Os03g0273800' => 'osa', 'Os03g0701200' => 'osa', 'Os03g0834050' => 'osa', 'Os07g0634400' => 'osa', 'Peaxi162Scf00092g01414' => 'pax', 'Peaxi162Scf00165g00818' => 'pax', 'Peaxi162Scf00309g00516' => 'pax', 'Peaxi162Scf00774g00218' => 'pax', 'PGR004G1824' => 'pgr', 'PGR004G2606' => 'pgr', 'PGR031G2716' => 'pgr', 'PGR102G2460' => 'pgr', 'PGR142G2599' => 'pgr', 'PGSC0003DMG400000843' => 'stu', 'PGSC0003DMG400008829' => 'stu', 'PGSC0003DMG400030418' => 'stu', 'PGSC0003DMG400031834' => 'stu', 'PGSC0003DMG401028300' => 'stu', 'PGSC0003DMG402028300' => 'stu', 'Phvul.001G219300' => 'pvu', 'Phvul.007G056000' => 'pvu', 'Phvul.007G208000' => 'pvu', 'Phvul.008G119500' => 'pvu', 'Phvul.010G011200' => 'pvu', 'Phvul.010G014800' => 'pvu', 'Phvul.011G062900' => 'pvu', 'Phvul.L007043' => 'pvu', 'Potri.001G242300' => 'ptr', 'Potri.002G185300' => 'ptr', 'Potri.006G086900' => 'ptr', 'Potri.008G151700' => 'ptr', 'Potri.009G033500' => 'ptr', 'Potri.010G089300' => 'ptr', 'Potri.014G110800' => 'ptr', 'Pp3c27_8130' => 'ppa', 'Pp3c6_27410' => 'ppa', 'PRCOL_00001659' => 'pco', 'PRCOL_00001927' => 'pco', 'PRCOL_00003649' => 'pco', 'Prupe.1G011600' => 'ppe', 'Prupe.3G000800' => 'ppe', 'Prupe.3G001100' => 'ppe', 'Prupe.6G072700' => 'ppe', 'Prupe.6G072800' => 'ppe', 'Prupe.6G257300' => 'ppe', 'Prupe.8G033000' => 'ppe', 'Psat0s2633g0080' => 'psa', 'Psat0s3396g0080' => 'psa', 'Psat0s3396g0200' => 'psa', 'Psat3g139080' => 'psa', 'Psat5g285080' => 'psa', 'Psat6g157760' => 'psa', 'Psat6g208440' => 'psa', 'Psat7g215320' => 'psa', 'Psat7g215400' => 'psa', 'Psat7g235600' => 'psa', 'Psat7g235760' => 'psa', 'PSO063G4603' => 'pso', 'PSO210G0182' => 'pso', 'PSO210G0196' => 'pso', 'PSO339G0394' => 'pso', 'PSO339G4127' => 'pso', 'PSO513G0064' => 'pso', 'PSO761G0079' => 'pso', 'QL01p031003' => 'qlo', 'QL01p031078' => 'qlo', 'QL06p003004' => 'qlo', 'QL07p048731' => 'qlo', 'QL09p037427' => 'qlo', 'RcHm_v2.0_Chr3g0466361' => 'rch', 'RcHm_v2.0_Chr3g0485571' => 'rch', 'RcHm_v2.0_Chr4g0416551' => 'rch', 'RcHm_v2.0_Chr5g0065831' => 'rch', 'Rhsim01G0230500' => 'rsi', 'Rhsim05G0194000' => 'rsi', 'Rhsim08G0250400' => 'rsi', 'Sabra02G0131000' => 'sbr', 'Sabra06G0066300' => 'sbr', 'Sabra08G0115500' => 'sbr', 'Sabra09G0023900' => 'sbr', 'Sabra10G0054000' => 'sbr', 'Sabra14G0081500' => 'sbr', 'Sabra16G0147100' => 'sbr', 'SalBow2G2957' => 'sbo', 'SalBow4G3320' => 'sbo', 'SalBow8G1894' => 'sbo', 'Sc07g0007950' => 'sci', 'Sc12g0001360' => 'sci', 'Sc13g0004330' => 'sci', 'Sc20g0005010' => 'sci', 'Sed0000361' => 'sed', 'Sed0001706' => 'sed', 'Sed0002422' => 'sed', 'Sed0004029' => 'sed', 'Sed0004602' => 'sed', 'Sed0004943' => 'sed', 'Sed0008646' => 'sed', 'Sed0023313' => 'sed', 'Sed0024843' => 'sed', 'SEGI_00081' => 'sgi', 'SEGI_00947' => 'sgi', 'SEGI_04046' => 'sgi', 'SEGI_06880' => 'sgi', 'SEGI_09736' => 'sgi', 'SEGI_12741' => 'sgi', 'SEGI_14530' => 'sgi', 'SEGI_20705' => 'sgi', 'SEGI_26088' => 'sgi', 'SEGI_28323' => 'sgi', 'SEGI_33343' => 'sgi', 'SGA_v2.0_scaffold126G33775' => 'sas', 'SGA_v2.0_scaffold2G01337' => 'sas', 'SGA_v2.0_scaffold38G15006' => 'sas', 'SGA_v2.0_scaffold39G15264' => 'sas', 'SGA_v2.0_scaffold453G51880' => 'sas', 'SHI12696' => 'shi', 'SMO367G1096' => 'smo', 'Solyc01g068630.3' => 'sly', 'Solyc05g011880.3' => 'sly', 'Solyc06g076300.3' => 'sly', 'Solyc09g010940.4' => 'sly', 'Solyc09g075890.3' => 'sly', 'Sopen01g030560' => 'spe', 'Sopen05g006630' => 'spe', 'Sopen06g032720' => 'spe', 'Sopen09g005660' => 'spe', 'Sopen09g030690' => 'spe', 'Sp4g14540' => 'spa', 'Sp4g20030' => 'spa', 'Sp5g01320' => 'spa', 'Sp6g21170' => 'spa', 'Sp6g21180' => 'spa', 'Sp6g21190' => 'spa', 'Sp6g40220' => 'spa', 'TAR362G0122' => 'tar', 'TAR362G1338' => 'tar', 'TAR369G0590' => 'tar', 'TAR371G0824' => 'tar', 'TAR622G1429' => 'tar', 'TAR623G0734' => 'tar', 'TAR625G0441' => 'tar', 'TAR629G0976' => 'tar', 'TAR633G1195' => 'tar', 'TAR636G2660' => 'tar', 'THA.LOC104799440' => 'tha', 'THA.LOC104800966' => 'tha', 'THA.LOC104806559' => 'tha', 'THA.LOC104810765' => 'tha', 'THA.LOC104816266' => 'tha', 'THA.LOC104817419' => 'tha', 'THA.LOC104827021' => 'tha', 'Thecc.01G327400' => 'tca', 'Thecc.04G229200' => 'tca', 'Thecc.05G037400' => 'tca', 'Thecc.09G318600' => 'tca', 'Thecc.09G318700' => 'tca', 'Thhalv10006238m.g' => 'esa', 'Thhalv10014321m.g' => 'esa', 'Thhalv10014335m.g' => 'esa', 'Thhalv10015826m.g' => 'esa', 'Thhalv10017107m.g' => 'esa', 'Thhalv10017180m.g' => 'esa', 'Thhalv10029339m.g' => 'esa', 'TPR.G1699' => 'tpr', 'TPR.G23609' => 'tpr', 'TPR.G3081' => 'tpr', 'TPR.G40397' => 'tpr', 'TPR.G5522' => 'tpr', 'TPR.G5618' => 'tpr', 'TPR.G5626' => 'tpr', 'TWI09G1632' => 'twi', 'TWI23G1230' => 'twi', 'TWI53G1064' => 'twi', 'TWI59G0751' => 'twi', 'TWI74G0947' => 'twi', 'TWI77G0337' => 'twi', 'TWI79G1254' => 'twi', 'unitig_0.g2341' => 'ugi', 'unitig_26.g10006' => 'ugi', 'unitig_26.g10008' => 'ugi', 'unitig_26.g9192' => 'ugi', 'vmacro14547' => 'vma', 'vmacro15333' => 'vma', 'vmacro18743' => 'vma', 'vmacro20166' => 'vma', 'VMungo0331G0523' => 'vmu', 'VMungo0331G1202' => 'vmu', 'VMungo0720G1228' => 'vmu', 'VMungo0720G1514' => 'vmu', 'VMungo1080G0169' => 'vmu', 'VMungo1127G1475' => 'vmu', 'VMungo1383G1208' => 'vmu', 'VMungo1383G1698' => 'vmu', 'Zm00001eb012270' => 'zma', 'Zm00001eb054100' => 'zma', 'Zm00001eb063350' => 'zma', 'Zm00001eb328560' => 'zma', 'Zm00001eb342820' => 'zma', 'Zm00001eb362210' => 'zma', 'Zm00001eb397730' => 'zma', 'Zm00001eb399750' => 'zma' ) $gf_id = 'HOM05D000959' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000959' ) $data_identifier = 'HOM05D000959' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 5, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 5, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 10, 'mbi' => (int) 3, 'mco' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 2, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 3, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 11, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399750' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000959', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '622', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p07100' => 'bna', 'A03p11720' => 'bna', 'A05p08300' => 'bna', 'A05p13380' => 'bna', 'A09p54130' => 'bna', 'A10p16690' => 'bna', 'A10p16700' => 'bna', 'A10p33390' => 'bna', 'Aa31LG10G16020' => 'aar', 'Aa31LG1G11810' => 'aar', 'Aa31LG1G11830' => 'aar', 'Aa31LG1G22510' => 'aar', 'Aa31LG5G4890' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5793' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2310' => 'aag', 'Actinidia08499' => 'ach', 'Actinidia11262' => 'ach', 'Actinidia23926' => 'ach', 'Actinidia34420' => 'ach', 'Actinidia36970' => 'ach', 'Ah.02g111220' => 'amhyb', 'Ah.15g097750' => 'amhyb', 'AL4G27500' => 'aly', 'AL6G11470' => 'aly', 'AL8G35950' => 'aly', 'AL8G35960' => 'aly', 'AL8G35970' => 'aly', 'Aqoxy1G00912' => 'aox', 'Aqoxy2G02253' => 'aox', 'Aqoxy2G02411' => 'aox', 'Aqoxy5G00485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BZ66YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K8ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM4FUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6BF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HFV7XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25JBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0YNNV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MAKK6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P70IT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP2Z6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V61LZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YWP64R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3S9AI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7PGHH' => 'arhy', 'AT2G32150' => 'ath', 'AT3G62040' => 'ath', 'AT5G02230' => 'ath', 'AT5G59480' => 'ath', 'AT5G59490' => 'ath', 'ATR0332G060' => 'atr', 'ATR0559G190' => 'atr', 'ATR0693G294' => 'atr', 'Atru.chr3.3975' => 'acertr', 'Atru.chr3.3976' => 'acertr', 'Atru.chr3.3977' => 'acertr', 'Atru.chr4.2498' => 'acertr', 'Atru.chr5.838' => 'acertr', 'Atru.chr8.1990' => 'acertr', 'Atru.chr8.1991' => 'acertr', 'Atru.chr8.1992' => 'acertr', 'AUR62001759' => 'cqu', 'AUR62009545' => 'cqu', 'AUR62010474' => 'cqu', 'AUR62025820' => 'cqu', 'AUR62030422' => 'cqu', 'AUR62033605' => 'cqu', 'AUR62038615' => 'cqu', 'AUR62041347' => 'cqu', 'BcaB01g04574' => 'bca', 'BcaB02g09263' => 'bca', 'BcaB02g10453' => 'bca', 'BcaB05g22513' => 'bca', 'BcaB08g36253' => 'bca', 'BcaB08g36254' => 'bca', 'BcaC01g06519' => 'bca', 'BcaC02g11889' => 'bca', 'BcaC03g14010' => 'bca', 'BcaC03g18439' => 'bca', 'BcaC04g19765' => 'bca', 'BcaC09g48432' => 'bca', 'BcaNung07302' => 'bca', 'BolC2t06040H' => 'bol', 'BolC2t07346H' => 'bol', 'BolC3t13817H' => 'bol', 'BolC4t22625H' => 'bol', 'BolC4t23297H' => 'bol', 'BolC8t51278H' => 'bol', 'BolC9t58050H' => 'bol', 'BolC9t58051H' => 'bol', 'BolC9t60163H' => 'bol', 'BraA02t04712Z' => 'bra', 'BraA02t05791Z' => 'bra', 'BraA03t10483Z' => 'bra', 'BraA05t19795Z' => 'bra', 'BraA05t20276Z' => 'bra', 'BraA09t40827Z' => 'bra', 'BraA10t43750Z' => 'bra', 'BraA10t43751Z' => 'bra', 'BraA10t45370Z' => 'bra', 'C02p00400' => 'bna', 'C02p12460' => 'bna', 'C03p13680' => 'bna', 'C04p10270' => 'bna', 'C04p17500' => 'bna', 'C08p37010' => 'bna', 'C09p51880' => 'bna', 'C09p51890' => 'bna', 'C09p74300' => 'bna', 'CAN.G179.26' => 'can', 'CAN.G3384.1' => 'can', 'CAN.G394.68' => 'can', 'CAN.G907.13' => 'can', 'CANSAT11G0012' => 'cansat', 'CANSAT25G1586' => 'cansat', 'CANSAT35G0735' => 'cansat', 'CANSAT54G0556' => 'cansat', 'CANSAT64G0356' => 'cansat', 'CANSAT78G2042' => 'cansat', 'CARHR125920' => 'chi', 'CARHR131910' => 'chi', 'CARHR172390' => 'chi', 'CARHR211140' => 'chi', 'CARHR285850' => 'chi', 'CARHR285860' => 'chi', 'Carub.0004s1347' => 'cru', 'Carub.0004s1960' => 'cru', 'Carub.0005s2880' => 'cru', 'Carub.0006s0107' => 'cru', 'Carub.0008s2015' => 'cru', 'Carub.0008s2016' => 'cru', 'Carub.0008s2017' => 'cru', 'Ca_01315_v3' => 'car', 'Ca_05063_v3' => 'car', 'Ca_10231_v3' => 'car', 'Ca_10913_v3' => 'car', 'Ca_19156_v3' => 'car', 'Ca_23644_v3' => 'car', 'Ca_26735_v3' => 'car', 'Cc01_g13130' => 'ccan', 'Cc02_g21690' => 'ccan', 'Cc03_g03600' => 'ccan', 'Cc06_g02510' => 'ccan', 'CDE02G1265' => 'cde', 'CDE05G0415' => 'cde', 'CDE08G1082' => 'cde', 'Cfa005780' => 'cfa', 'Cfa011522' => 'cfa', 'Cfa011523' => 'cfa', 'Cfa015627' => 'cfa', 'Cfa017359' => 'cfa', 'Ciclev10005687m.g' => 'ccl', 'Ciclev10012173m.g' => 'ccl', 'Ciclev10021621m.g' => 'ccl', 'Ciclev10028968m.g' => 'ccl', 'Ciclev10029907m.g' => 'ccl', 'CiPaw.01G164800' => 'cil', 'CiPaw.07G083700' => 'cil', 'CiPaw.07G127000' => 'cil', 'CiPaw.07G136900' => 'cil', 'CiPaw.08G081700' => 'cil', 'CiPaw.09G194600' => 'cil', 'CiPaw.10G146500' => 'cil', 'CiPaw.13G091500' => 'cil', 'CiPaw.13G091600' => 'cil', 'ClCG00G003390' => 'cla', 'ClCG01G007220' => 'cla', 'ClCG03G001370' => 'cla', 'ClCG04G008100' => 'cla', 'ClCG06G006110' => 'cla', 'ClCG06G006130' => 'cla', 'ClCG10G021210' => 'cla', 'COL.COLO4_07648' => 'col', 'COL.COLO4_07650' => 'col', 'COL.COLO4_07651' => 'col', 'COL.COLO4_14780' => 'col', 'COL.COLO4_18546' => 'col', 'COL.COLO4_18547' => 'col', 'COL.COLO4_23103' => 'col', 'COL.COLO4_30419' => 'col', 'COL.COLO4_34232' => 'col', 'Cpa.g.sc169.20' => 'cpa', 'Cpa.g.sc57.45' => 'cpa', 'Cpa.g.sc58.124' => 'cpa', 'Cpa.g.sc58.125' => 'cpa', 'Cpa.g.sc81.118' => 'cpa', 'Cpa.g.sc81.119' => 'cpa', 'Cre12.g524700' => 'cre', 'CsaV3_1G034430' => 'csa', 'CsaV3_1G034440' => 'csa', 'CsaV3_1G034450' => 'csa', 'CsaV3_3G034830' => 'csa', 'CsaV3_4G025090' => 'csa', 'CsaV3_5G018660' => 'csa', 'CsaV3_6G038160' => 'csa', 'CSS0003447' => 'camsi', 'CSS0017840' => 'camsi', 'CSS0019260' => 'camsi', 'CSS0040375' => 'camsi', 'CSS0042533' => 'camsi', 'DCAR_005960' => 'dca', 'DCAR_012104' => 'dca', 'DCAR_012105' => 'dca', 'DCAR_012293' => 'dca', 'DCAR_015632' => 'dca', 'DCAR_024602' => 'dca', 'DCAR_028752' => 'dca', 'Dinv06261' => 'din', 'Dinv13982' => 'din', 'Dinv17029' => 'din', 'Dinv18463' => 'din', 'Dinv33181' => 'din', 'Dinv35585' => 'din', 'Dinv37161' => 'din', 'Dinv42977' => 'din', 'Dinv43122' => 'din', 'Dinv44517' => 'din', 'Duzib093G0256' => 'dzi', 'Duzib106G1254' => 'dzi', 'Duzib128G1789' => 'dzi', 'Duzib133G0633' => 'dzi', 'Duzib138G0510' => 'dzi', 'Duzib150G1084' => 'dzi', 'Duzib168G0488' => 'dzi', 'Duzib168G1523' => 'dzi', 'Duzib170G0133' => 'dzi', 'ECA234G1433' => 'eca', 'ECA236G1432' => 'eca', 'ECA236G2256' => 'eca', 'ECA236G2365' => 'eca', 'ECA236G4830' => 'eca', 'ECA248G1505' => 'eca', 'EL10Ac3g06431' => 'bvu', 'EL10Ac5g12577' => 'bvu', 'EL10Ac6g13533' => 'bvu', 'EL10Ac7g16045' => 'bvu', 'Eucgr.A01281' => 'egr', 'Eucgr.B02326' => 'egr', 'Eucgr.H03532' => 'egr', 'Eucgr.K00553' => 'egr', 'Eucgr.K03116' => 'egr', 'FAN02G3963' => 'fan', 'FAN05G0438' => 'fan', 'FAN09G2434' => 'fan', 'FAN12G3984' => 'fan', 'FAN14G0798' => 'fan', 'FAN17G0652' => 'fan', 'FAN19G1988' => 'fan', 'FAN22G0632' => 'fan', 'FAN23G0387' => 'fan', 'FAN26G1323' => 'fan', 'FAN28G0666' => 'fan', 'FvH4_1g26080' => 'fve', 'FvH4_3g36780' => 'fve', 'FvH4_4g15270' => 'fve', 'FvH4_6g13490' => 'fve', 'Glyma.01G098700' => 'gma', 'Glyma.03G065900' => 'gma', 'Glyma.03G073754' => 'gma', 'Glyma.03G073758' => 'gma', 'Glyma.03G083200' => 'gma', 'Glyma.03G225500' => 'gma', 'Glyma.05G037766' => 'gma', 'Glyma.07G133500' => 'gma', 'Glyma.10G139400' => 'gma', 'Glyma.10G248900' => 'gma', 'Glyma.11G137800' => 'gma', 'Glyma.12G061300' => 'gma', 'Glyma.13G337900' => 'gma', 'Glyma.15G036600' => 'gma', 'Glyma.18G182800' => 'gma', 'Glyma.19G222500' => 'gma', 'Glyma.20G144800' => 'gma', 'Gohir.A01G222000' => 'ghi', 'Gohir.A03G044000' => 'ghi', 'Gohir.A03G044100' => 'ghi', 'Gohir.A04G083100' => 'ghi', 'Gohir.A07G127200' => 'ghi', 'Gohir.A07G132400' => 'ghi', 'Gohir.A08G000700' => 'ghi', 'Gohir.A11G327300' => 'ghi', 'Gohir.D01G211500' => 'ghi', 'Gohir.D03G123400' => 'ghi', 'Gohir.D03G123500' => 'ghi', 'Gohir.D04G121800' => 'ghi', 'Gohir.D07G131500' => 'ghi', 'Gohir.D07G136600' => 'ghi', 'Gohir.D08G011600' => 'ghi', 'Gohir.D11G346200' => 'ghi', 'Gorai.001G142800' => 'gra', 'Gorai.001G148700' => 'gra', 'Gorai.002G257300' => 'gra', 'Gorai.003G130000' => 'gra', 'Gorai.003G130100' => 'gra', 'Gorai.004G005300' => 'gra', 'Gorai.007G376500' => 'gra', 'Gorai.012G104700' => 'gra', 'GSVIVG01017946001' => 'vvi', 'GSVIVG01024928001' => 'vvi', 'GSVIVG01028227001' => 'vvi', 'GSVIVG01034151001' => 'vvi', 'HanXRQChr05g0135031' => 'han', 'HanXRQChr05g0135041' => 'han', 'HanXRQChr05g0140021' => 'han', 'HanXRQChr06g0178981' => 'han', 'HanXRQChr07g0188251' => 'han', 'HanXRQChr08g0235311' => 'han', 'HanXRQChr09g0271011' => 'han', 'HanXRQChr10g0293321' => 'han', 'HanXRQChr13g0388171' => 'han', 'Haze_00916' => 'cav', 'Haze_05063' => 'cav', 'Haze_20814' => 'cav', 'Haze_24128' => 'cav', 'Hma1.2p1_0745F.1_g212010' => 'hma', 'Hma1.2p1_0757F.1_g213260' => 'hma', 'Hma1.2p1_0936F.1_g238840' => 'hma', 'Hma1.2p1_1735F.1_g299890' => 'hma', 'Hma1.2p1_1861F.1_g305685' => 'hma', 'HPP92_003397' => 'vpl', 'HPP92_012597' => 'vpl', 'HPP92_015520' => 'vpl', 'HPP92_015539' => 'vpl', 'HPP92_020373' => 'vpl', 'Hund04938' => 'sun', 'Hund10677' => 'sun', 'Hund11033' => 'sun', 'Hund12155' => 'sun', 'Lalb_Chr01g0022551' => 'lal', 'Lalb_Chr03g0042341' => 'lal', 'Lalb_Chr07g0192931' => 'lal', 'Lalb_Chr12g0209551' => 'lal', 'Lalb_Chr19g0125251' => 'lal', 'Lalb_Chr19g0137891' => 'lal', 'Lalb_Chr21g0304641' => 'lal', 'Lalb_Chr21g0309881' => 'lal', 'Lj1A5T12' => 'lonja', 'Lj1C148G10' => 'lonja', 'Lj2A93T83' => 'lonja', 'Lj3A738G68' => 'lonja', 'Lj3C966T1' => 'lonja', 'Lj3g0018958' => 'lja', 'Lj3g0021831' => 'lja', 'Lj3g0025443' => 'lja', 'Lj4g0026809' => 'lja', 'Lj5g0012558' => 'lja', 'Lj5g0021586' => 'lja', 'Lsat_1_v5_gn_5_156840' => 'lsa', 'Lsat_1_v5_gn_8_73460' => 'lsa', 'Lsat_1_v5_gn_8_73481' => 'lsa', 'Lsat_1_v5_gn_9_31601' => 'lsa', 'Lsat_1_v5_gn_9_77320' => 'lsa', 'Manes.01G171300' => 'mes', 'Manes.01G171400' => 'mes', 'Manes.01G236100' => 'mes', 'Manes.02G130500' => 'mes', 'Manes.02G130600' => 'mes', 'Manes.03G180200' => 'mes', 'Manes.05G007000' => 'mes', 'Manes.08G084400' => 'mes', 'Manes.09G092600' => 'mes', 'Manes.15G027900' => 'mes', 'MBI04_g40948_MAGBIO' => 'mbi', 'MBI14_g12123_MAGBIO' => 'mbi', 'MBI18_g28915_MAGBIO' => 'mbi', 'MCO09G053' => 'mco', 'MCO11G782' => 'mco', 'MCO15G215' => 'mco', 'MD03G1088500' => 'mdo', 'MD03G1088600' => 'mdo', 'MD04G1130800' => 'mdo', 'MD09G1291700' => 'mdo', 'MD11G1097500' => 'mdo', 'MD11G1097600' => 'mdo', 'MD12G1143900' => 'mdo', 'MD13G1191400' => 'mdo', 'MD16G1191500' => 'mdo', 'Medtr1g085570' => 'mtr', 'Medtr1g104610' => 'mtr', 'Medtr2g097520' => 'mtr', 'Medtr4g021800' => 'mtr', 'Medtr4g021825' => 'mtr', 'Medtr4g064270' => 'mtr', 'Medtr4g064380' => 'mtr', 'Medtr7g062150' => 'mtr', 'MELO3C003138.2' => 'cme', 'MELO3C005187.2' => 'cme', 'MELO3C009252.2' => 'cme', 'MELO3C014481.2' => 'cme', 'MELO3C020616.2' => 'cme', 'MELO3C020617.2' => 'cme', 'MELO3C020618.2' => 'cme', 'Migut.G00328' => 'egut', 'Migut.J00320' => 'egut', 'Migut.L01000' => 'egut', 'Migut.L01953' => 'egut', 'MSTRG.10253' => 'ama', 'MSTRG.19077' => 'ama', 'MSTRG.26780' => 'ama', 'MSTRG.4023' => 'ama', 'MSTRG.5655' => 'ama', 'MSTRG.9992' => 'ama', 'Nitab4.5_0000043g0310' => 'nta', 'Nitab4.5_0000463g0080' => 'nta', 'Nitab4.5_0000705g0170' => 'nta', 'Nitab4.5_0001326g0060' => 'nta', 'Nitab4.5_0001628g0030' => 'nta', 'Nitab4.5_0002103g0110' => 'nta', 'Nitab4.5_0002946g0030' => 'nta', 'Nitab4.5_0004639g0030' => 'nta', 'Nn2g11149' => 'nnu', 'Nn2g13389' => 'nnu', 'Nn4g25326' => 'nnu', 'Nn4g26290' => 'nnu', 'Nn5g29865' => 'nnu', 'Oeu004163.1' => 'oeu', 'Oeu006901.1' => 'oeu', 'Oeu010096.1' => 'oeu', 'Oeu024340.1' => 'oeu', 'Oeu048369.1' => 'oeu', 'Os01g0973000' => 'osa', 'Os03g0273800' => 'osa', 'Os03g0701200' => 'osa', 'Os03g0834050' => 'osa', 'Os07g0634400' => 'osa', 'Peaxi162Scf00092g01414' => 'pax', 'Peaxi162Scf00165g00818' => 'pax', 'Peaxi162Scf00309g00516' => 'pax', 'Peaxi162Scf00774g00218' => 'pax', 'PGR004G1824' => 'pgr', 'PGR004G2606' => 'pgr', 'PGR031G2716' => 'pgr', 'PGR102G2460' => 'pgr', 'PGR142G2599' => 'pgr', 'PGSC0003DMG400000843' => 'stu', 'PGSC0003DMG400008829' => 'stu', 'PGSC0003DMG400030418' => 'stu', 'PGSC0003DMG400031834' => 'stu', 'PGSC0003DMG401028300' => 'stu', 'PGSC0003DMG402028300' => 'stu', 'Phvul.001G219300' => 'pvu', 'Phvul.007G056000' => 'pvu', 'Phvul.007G208000' => 'pvu', 'Phvul.008G119500' => 'pvu', 'Phvul.010G011200' => 'pvu', 'Phvul.010G014800' => 'pvu', 'Phvul.011G062900' => 'pvu', 'Phvul.L007043' => 'pvu', 'Potri.001G242300' => 'ptr', 'Potri.002G185300' => 'ptr', 'Potri.006G086900' => 'ptr', 'Potri.008G151700' => 'ptr', 'Potri.009G033500' => 'ptr', 'Potri.010G089300' => 'ptr', 'Potri.014G110800' => 'ptr', 'Pp3c27_8130' => 'ppa', 'Pp3c6_27410' => 'ppa', 'PRCOL_00001659' => 'pco', 'PRCOL_00001927' => 'pco', 'PRCOL_00003649' => 'pco', 'Prupe.1G011600' => 'ppe', 'Prupe.3G000800' => 'ppe', 'Prupe.3G001100' => 'ppe', 'Prupe.6G072700' => 'ppe', 'Prupe.6G072800' => 'ppe', 'Prupe.6G257300' => 'ppe', 'Prupe.8G033000' => 'ppe', 'Psat0s2633g0080' => 'psa', 'Psat0s3396g0080' => 'psa', 'Psat0s3396g0200' => 'psa', 'Psat3g139080' => 'psa', 'Psat5g285080' => 'psa', 'Psat6g157760' => 'psa', 'Psat6g208440' => 'psa', 'Psat7g215320' => 'psa', 'Psat7g215400' => 'psa', 'Psat7g235600' => 'psa', 'Psat7g235760' => 'psa', 'PSO063G4603' => 'pso', 'PSO210G0182' => 'pso', 'PSO210G0196' => 'pso', 'PSO339G0394' => 'pso', 'PSO339G4127' => 'pso', 'PSO513G0064' => 'pso', 'PSO761G0079' => 'pso', 'QL01p031003' => 'qlo', 'QL01p031078' => 'qlo', 'QL06p003004' => 'qlo', 'QL07p048731' => 'qlo', 'QL09p037427' => 'qlo', 'RcHm_v2.0_Chr3g0466361' => 'rch', 'RcHm_v2.0_Chr3g0485571' => 'rch', 'RcHm_v2.0_Chr4g0416551' => 'rch', 'RcHm_v2.0_Chr5g0065831' => 'rch', 'Rhsim01G0230500' => 'rsi', 'Rhsim05G0194000' => 'rsi', 'Rhsim08G0250400' => 'rsi', 'Sabra02G0131000' => 'sbr', 'Sabra06G0066300' => 'sbr', 'Sabra08G0115500' => 'sbr', 'Sabra09G0023900' => 'sbr', 'Sabra10G0054000' => 'sbr', 'Sabra14G0081500' => 'sbr', 'Sabra16G0147100' => 'sbr', 'SalBow2G2957' => 'sbo', 'SalBow4G3320' => 'sbo', 'SalBow8G1894' => 'sbo', 'Sc07g0007950' => 'sci', 'Sc12g0001360' => 'sci', 'Sc13g0004330' => 'sci', 'Sc20g0005010' => 'sci', 'Sed0000361' => 'sed', 'Sed0001706' => 'sed', 'Sed0002422' => 'sed', 'Sed0004029' => 'sed', 'Sed0004602' => 'sed', 'Sed0004943' => 'sed', 'Sed0008646' => 'sed', 'Sed0023313' => 'sed', 'Sed0024843' => 'sed', 'SEGI_00081' => 'sgi', 'SEGI_00947' => 'sgi', 'SEGI_04046' => 'sgi', 'SEGI_06880' => 'sgi', 'SEGI_09736' => 'sgi', 'SEGI_12741' => 'sgi', 'SEGI_14530' => 'sgi', 'SEGI_20705' => 'sgi', 'SEGI_26088' => 'sgi', 'SEGI_28323' => 'sgi', 'SEGI_33343' => 'sgi', 'SGA_v2.0_scaffold126G33775' => 'sas', 'SGA_v2.0_scaffold2G01337' => 'sas', 'SGA_v2.0_scaffold38G15006' => 'sas', 'SGA_v2.0_scaffold39G15264' => 'sas', 'SGA_v2.0_scaffold453G51880' => 'sas', 'SHI12696' => 'shi', 'SMO367G1096' => 'smo', 'Solyc01g068630.3' => 'sly', 'Solyc05g011880.3' => 'sly', 'Solyc06g076300.3' => 'sly', 'Solyc09g010940.4' => 'sly', 'Solyc09g075890.3' => 'sly', 'Sopen01g030560' => 'spe', 'Sopen05g006630' => 'spe', 'Sopen06g032720' => 'spe', 'Sopen09g005660' => 'spe', 'Sopen09g030690' => 'spe', 'Sp4g14540' => 'spa', 'Sp4g20030' => 'spa', 'Sp5g01320' => 'spa', 'Sp6g21170' => 'spa', 'Sp6g21180' => 'spa', 'Sp6g21190' => 'spa', 'Sp6g40220' => 'spa', 'TAR362G0122' => 'tar', 'TAR362G1338' => 'tar', 'TAR369G0590' => 'tar', 'TAR371G0824' => 'tar', 'TAR622G1429' => 'tar', 'TAR623G0734' => 'tar', 'TAR625G0441' => 'tar', 'TAR629G0976' => 'tar', 'TAR633G1195' => 'tar', 'TAR636G2660' => 'tar', 'THA.LOC104799440' => 'tha', 'THA.LOC104800966' => 'tha', 'THA.LOC104806559' => 'tha', 'THA.LOC104810765' => 'tha', 'THA.LOC104816266' => 'tha', 'THA.LOC104817419' => 'tha', 'THA.LOC104827021' => 'tha', 'Thecc.01G327400' => 'tca', 'Thecc.04G229200' => 'tca', 'Thecc.05G037400' => 'tca', 'Thecc.09G318600' => 'tca', 'Thecc.09G318700' => 'tca', 'Thhalv10006238m.g' => 'esa', 'Thhalv10014321m.g' => 'esa', 'Thhalv10014335m.g' => 'esa', 'Thhalv10015826m.g' => 'esa', 'Thhalv10017107m.g' => 'esa', 'Thhalv10017180m.g' => 'esa', 'Thhalv10029339m.g' => 'esa', 'TPR.G1699' => 'tpr', 'TPR.G23609' => 'tpr', 'TPR.G3081' => 'tpr', 'TPR.G40397' => 'tpr', 'TPR.G5522' => 'tpr', 'TPR.G5618' => 'tpr', 'TPR.G5626' => 'tpr', 'TWI09G1632' => 'twi', 'TWI23G1230' => 'twi', 'TWI53G1064' => 'twi', 'TWI59G0751' => 'twi', 'TWI74G0947' => 'twi', 'TWI77G0337' => 'twi', 'TWI79G1254' => 'twi', 'unitig_0.g2341' => 'ugi', 'unitig_26.g10006' => 'ugi', 'unitig_26.g10008' => 'ugi', 'unitig_26.g9192' => 'ugi', 'vmacro14547' => 'vma', 'vmacro15333' => 'vma', 'vmacro18743' => 'vma', 'vmacro20166' => 'vma', 'VMungo0331G0523' => 'vmu', 'VMungo0331G1202' => 'vmu', 'VMungo0720G1228' => 'vmu', 'VMungo0720G1514' => 'vmu', 'VMungo1080G0169' => 'vmu', 'VMungo1127G1475' => 'vmu', 'VMungo1383G1208' => 'vmu', 'VMungo1383G1698' => 'vmu', 'Zm00001eb012270' => 'zma', 'Zm00001eb054100' => 'zma', 'Zm00001eb063350' => 'zma', 'Zm00001eb328560' => 'zma', 'Zm00001eb342820' => 'zma', 'Zm00001eb362210' => 'zma', 'Zm00001eb397730' => 'zma', 'Zm00001eb399750' => 'zma' ), 'gf_id' => 'HOM05D000959', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000959' ), 'data_identifier' => 'HOM05D000959', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000959', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '622', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p07100' => 'bna', 'A03p11720' => 'bna', 'A05p08300' => 'bna', 'A05p13380' => 'bna', 'A09p54130' => 'bna', 'A10p16690' => 'bna', 'A10p16700' => 'bna', 'A10p33390' => 'bna', 'Aa31LG10G16020' => 'aar', 'Aa31LG1G11810' => 'aar', 'Aa31LG1G11830' => 'aar', 'Aa31LG1G22510' => 'aar', 'Aa31LG5G4890' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5793' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2310' => 'aag', 'Actinidia08499' => 'ach', 'Actinidia11262' => 'ach', 'Actinidia23926' => 'ach', 'Actinidia34420' => 'ach', 'Actinidia36970' => 'ach', 'Ah.02g111220' => 'amhyb', 'Ah.15g097750' => 'amhyb', 'AL4G27500' => 'aly', 'AL6G11470' => 'aly', 'AL8G35950' => 'aly', 'AL8G35960' => 'aly', 'AL8G35970' => 'aly', 'Aqoxy1G00912' => 'aox', 'Aqoxy2G02253' => 'aox', 'Aqoxy2G02411' => 'aox', 'Aqoxy5G00485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BZ66YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K8ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM4FUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6BF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HFV7XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25JBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0YNNV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MAKK6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P70IT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP2Z6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V61LZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YWP64R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3S9AI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7PGHH' => 'arhy', 'AT2G32150' => 'ath', 'AT3G62040' => 'ath', 'AT5G02230' => 'ath', 'AT5G59480' => 'ath', 'AT5G59490' => 'ath', 'ATR0332G060' => 'atr', 'ATR0559G190' => 'atr', 'ATR0693G294' => 'atr', 'Atru.chr3.3975' => 'acertr', 'Atru.chr3.3976' => 'acertr', 'Atru.chr3.3977' => 'acertr', 'Atru.chr4.2498' => 'acertr', 'Atru.chr5.838' => 'acertr', 'Atru.chr8.1990' => 'acertr', 'Atru.chr8.1991' => 'acertr', 'Atru.chr8.1992' => 'acertr', 'AUR62001759' => 'cqu', 'AUR62009545' => 'cqu', 'AUR62010474' => 'cqu', 'AUR62025820' => 'cqu', 'AUR62030422' => 'cqu', 'AUR62033605' => 'cqu', 'AUR62038615' => 'cqu', 'AUR62041347' => 'cqu', 'BcaB01g04574' => 'bca', 'BcaB02g09263' => 'bca', 'BcaB02g10453' => 'bca', 'BcaB05g22513' => 'bca', 'BcaB08g36253' => 'bca', 'BcaB08g36254' => 'bca', 'BcaC01g06519' => 'bca', 'BcaC02g11889' => 'bca', 'BcaC03g14010' => 'bca', 'BcaC03g18439' => 'bca', 'BcaC04g19765' => 'bca', 'BcaC09g48432' => 'bca', 'BcaNung07302' => 'bca', 'BolC2t06040H' => 'bol', 'BolC2t07346H' => 'bol', 'BolC3t13817H' => 'bol', 'BolC4t22625H' => 'bol', 'BolC4t23297H' => 'bol', 'BolC8t51278H' => 'bol', 'BolC9t58050H' => 'bol', 'BolC9t58051H' => 'bol', 'BolC9t60163H' => 'bol', 'BraA02t04712Z' => 'bra', 'BraA02t05791Z' => 'bra', 'BraA03t10483Z' => 'bra', 'BraA05t19795Z' => 'bra', 'BraA05t20276Z' => 'bra', 'BraA09t40827Z' => 'bra', 'BraA10t43750Z' => 'bra', 'BraA10t43751Z' => 'bra', 'BraA10t45370Z' => 'bra', 'C02p00400' => 'bna', 'C02p12460' => 'bna', 'C03p13680' => 'bna', 'C04p10270' => 'bna', 'C04p17500' => 'bna', 'C08p37010' => 'bna', 'C09p51880' => 'bna', 'C09p51890' => 'bna', 'C09p74300' => 'bna', 'CAN.G179.26' => 'can', 'CAN.G3384.1' => 'can', 'CAN.G394.68' => 'can', 'CAN.G907.13' => 'can', 'CANSAT11G0012' => 'cansat', 'CANSAT25G1586' => 'cansat', 'CANSAT35G0735' => 'cansat', 'CANSAT54G0556' => 'cansat', 'CANSAT64G0356' => 'cansat', 'CANSAT78G2042' => 'cansat', 'CARHR125920' => 'chi', 'CARHR131910' => 'chi', 'CARHR172390' => 'chi', 'CARHR211140' => 'chi', 'CARHR285850' => 'chi', 'CARHR285860' => 'chi', 'Carub.0004s1347' => 'cru', 'Carub.0004s1960' => 'cru', 'Carub.0005s2880' => 'cru', 'Carub.0006s0107' => 'cru', 'Carub.0008s2015' => 'cru', 'Carub.0008s2016' => 'cru', 'Carub.0008s2017' => 'cru', 'Ca_01315_v3' => 'car', 'Ca_05063_v3' => 'car', 'Ca_10231_v3' => 'car', 'Ca_10913_v3' => 'car', 'Ca_19156_v3' => 'car', 'Ca_23644_v3' => 'car', 'Ca_26735_v3' => 'car', 'Cc01_g13130' => 'ccan', 'Cc02_g21690' => 'ccan', 'Cc03_g03600' => 'ccan', 'Cc06_g02510' => 'ccan', 'CDE02G1265' => 'cde', 'CDE05G0415' => 'cde', 'CDE08G1082' => 'cde', 'Cfa005780' => 'cfa', 'Cfa011522' => 'cfa', 'Cfa011523' => 'cfa', 'Cfa015627' => 'cfa', 'Cfa017359' => 'cfa', 'Ciclev10005687m.g' => 'ccl', 'Ciclev10012173m.g' => 'ccl', 'Ciclev10021621m.g' => 'ccl', 'Ciclev10028968m.g' => 'ccl', 'Ciclev10029907m.g' => 'ccl', 'CiPaw.01G164800' => 'cil', 'CiPaw.07G083700' => 'cil', 'CiPaw.07G127000' => 'cil', 'CiPaw.07G136900' => 'cil', 'CiPaw.08G081700' => 'cil', 'CiPaw.09G194600' => 'cil', 'CiPaw.10G146500' => 'cil', 'CiPaw.13G091500' => 'cil', 'CiPaw.13G091600' => 'cil', 'ClCG00G003390' => 'cla', 'ClCG01G007220' => 'cla', 'ClCG03G001370' => 'cla', 'ClCG04G008100' => 'cla', 'ClCG06G006110' => 'cla', 'ClCG06G006130' => 'cla', 'ClCG10G021210' => 'cla', 'COL.COLO4_07648' => 'col', 'COL.COLO4_07650' => 'col', 'COL.COLO4_07651' => 'col', 'COL.COLO4_14780' => 'col', 'COL.COLO4_18546' => 'col', 'COL.COLO4_18547' => 'col', 'COL.COLO4_23103' => 'col', 'COL.COLO4_30419' => 'col', 'COL.COLO4_34232' => 'col', 'Cpa.g.sc169.20' => 'cpa', 'Cpa.g.sc57.45' => 'cpa', 'Cpa.g.sc58.124' => 'cpa', 'Cpa.g.sc58.125' => 'cpa', 'Cpa.g.sc81.118' => 'cpa', 'Cpa.g.sc81.119' => 'cpa', 'Cre12.g524700' => 'cre', 'CsaV3_1G034430' => 'csa', 'CsaV3_1G034440' => 'csa', 'CsaV3_1G034450' => 'csa', 'CsaV3_3G034830' => 'csa', 'CsaV3_4G025090' => 'csa', 'CsaV3_5G018660' => 'csa', 'CsaV3_6G038160' => 'csa', 'CSS0003447' => 'camsi', 'CSS0017840' => 'camsi', 'CSS0019260' => 'camsi', 'CSS0040375' => 'camsi', 'CSS0042533' => 'camsi', 'DCAR_005960' => 'dca', 'DCAR_012104' => 'dca', 'DCAR_012105' => 'dca', 'DCAR_012293' => 'dca', 'DCAR_015632' => 'dca', 'DCAR_024602' => 'dca', 'DCAR_028752' => 'dca', 'Dinv06261' => 'din', 'Dinv13982' => 'din', 'Dinv17029' => 'din', 'Dinv18463' => 'din', 'Dinv33181' => 'din', 'Dinv35585' => 'din', 'Dinv37161' => 'din', 'Dinv42977' => 'din', 'Dinv43122' => 'din', 'Dinv44517' => 'din', 'Duzib093G0256' => 'dzi', 'Duzib106G1254' => 'dzi', 'Duzib128G1789' => 'dzi', 'Duzib133G0633' => 'dzi', 'Duzib138G0510' => 'dzi', 'Duzib150G1084' => 'dzi', 'Duzib168G0488' => 'dzi', 'Duzib168G1523' => 'dzi', 'Duzib170G0133' => 'dzi', 'ECA234G1433' => 'eca', 'ECA236G1432' => 'eca', 'ECA236G2256' => 'eca', 'ECA236G2365' => 'eca', 'ECA236G4830' => 'eca', 'ECA248G1505' => 'eca', 'EL10Ac3g06431' => 'bvu', 'EL10Ac5g12577' => 'bvu', 'EL10Ac6g13533' => 'bvu', 'EL10Ac7g16045' => 'bvu', 'Eucgr.A01281' => 'egr', 'Eucgr.B02326' => 'egr', 'Eucgr.H03532' => 'egr', 'Eucgr.K00553' => 'egr', 'Eucgr.K03116' => 'egr', 'FAN02G3963' => 'fan', 'FAN05G0438' => 'fan', 'FAN09G2434' => 'fan', 'FAN12G3984' => 'fan', 'FAN14G0798' => 'fan', 'FAN17G0652' => 'fan', 'FAN19G1988' => 'fan', 'FAN22G0632' => 'fan', 'FAN23G0387' => 'fan', 'FAN26G1323' => 'fan', 'FAN28G0666' => 'fan', 'FvH4_1g26080' => 'fve', 'FvH4_3g36780' => 'fve', 'FvH4_4g15270' => 'fve', 'FvH4_6g13490' => 'fve', 'Glyma.01G098700' => 'gma', 'Glyma.03G065900' => 'gma', 'Glyma.03G073754' => 'gma', 'Glyma.03G073758' => 'gma', 'Glyma.03G083200' => 'gma', 'Glyma.03G225500' => 'gma', 'Glyma.05G037766' => 'gma', 'Glyma.07G133500' => 'gma', 'Glyma.10G139400' => 'gma', 'Glyma.10G248900' => 'gma', 'Glyma.11G137800' => 'gma', 'Glyma.12G061300' => 'gma', 'Glyma.13G337900' => 'gma', 'Glyma.15G036600' => 'gma', 'Glyma.18G182800' => 'gma', 'Glyma.19G222500' => 'gma', 'Glyma.20G144800' => 'gma', 'Gohir.A01G222000' => 'ghi', 'Gohir.A03G044000' => 'ghi', 'Gohir.A03G044100' => 'ghi', 'Gohir.A04G083100' => 'ghi', 'Gohir.A07G127200' => 'ghi', 'Gohir.A07G132400' => 'ghi', 'Gohir.A08G000700' => 'ghi', 'Gohir.A11G327300' => 'ghi', 'Gohir.D01G211500' => 'ghi', 'Gohir.D03G123400' => 'ghi', 'Gohir.D03G123500' => 'ghi', 'Gohir.D04G121800' => 'ghi', 'Gohir.D07G131500' => 'ghi', 'Gohir.D07G136600' => 'ghi', 'Gohir.D08G011600' => 'ghi', 'Gohir.D11G346200' => 'ghi', 'Gorai.001G142800' => 'gra', 'Gorai.001G148700' => 'gra', 'Gorai.002G257300' => 'gra', 'Gorai.003G130000' => 'gra', 'Gorai.003G130100' => 'gra', 'Gorai.004G005300' => 'gra', 'Gorai.007G376500' => 'gra', 'Gorai.012G104700' => 'gra', 'GSVIVG01017946001' => 'vvi', 'GSVIVG01024928001' => 'vvi', 'GSVIVG01028227001' => 'vvi', 'GSVIVG01034151001' => 'vvi', 'HanXRQChr05g0135031' => 'han', 'HanXRQChr05g0135041' => 'han', 'HanXRQChr05g0140021' => 'han', 'HanXRQChr06g0178981' => 'han', 'HanXRQChr07g0188251' => 'han', 'HanXRQChr08g0235311' => 'han', 'HanXRQChr09g0271011' => 'han', 'HanXRQChr10g0293321' => 'han', 'HanXRQChr13g0388171' => 'han', 'Haze_00916' => 'cav', 'Haze_05063' => 'cav', 'Haze_20814' => 'cav', 'Haze_24128' => 'cav', 'Hma1.2p1_0745F.1_g212010' => 'hma', 'Hma1.2p1_0757F.1_g213260' => 'hma', 'Hma1.2p1_0936F.1_g238840' => 'hma', 'Hma1.2p1_1735F.1_g299890' => 'hma', 'Hma1.2p1_1861F.1_g305685' => 'hma', 'HPP92_003397' => 'vpl', 'HPP92_012597' => 'vpl', 'HPP92_015520' => 'vpl', 'HPP92_015539' => 'vpl', 'HPP92_020373' => 'vpl', 'Hund04938' => 'sun', 'Hund10677' => 'sun', 'Hund11033' => 'sun', 'Hund12155' => 'sun', 'Lalb_Chr01g0022551' => 'lal', 'Lalb_Chr03g0042341' => 'lal', 'Lalb_Chr07g0192931' => 'lal', 'Lalb_Chr12g0209551' => 'lal', 'Lalb_Chr19g0125251' => 'lal', 'Lalb_Chr19g0137891' => 'lal', 'Lalb_Chr21g0304641' => 'lal', 'Lalb_Chr21g0309881' => 'lal', 'Lj1A5T12' => 'lonja', 'Lj1C148G10' => 'lonja', 'Lj2A93T83' => 'lonja', 'Lj3A738G68' => 'lonja', 'Lj3C966T1' => 'lonja', 'Lj3g0018958' => 'lja', 'Lj3g0021831' => 'lja', 'Lj3g0025443' => 'lja', 'Lj4g0026809' => 'lja', 'Lj5g0012558' => 'lja', 'Lj5g0021586' => 'lja', 'Lsat_1_v5_gn_5_156840' => 'lsa', 'Lsat_1_v5_gn_8_73460' => 'lsa', 'Lsat_1_v5_gn_8_73481' => 'lsa', 'Lsat_1_v5_gn_9_31601' => 'lsa', 'Lsat_1_v5_gn_9_77320' => 'lsa', 'Manes.01G171300' => 'mes', 'Manes.01G171400' => 'mes', 'Manes.01G236100' => 'mes', 'Manes.02G130500' => 'mes', 'Manes.02G130600' => 'mes', 'Manes.03G180200' => 'mes', 'Manes.05G007000' => 'mes', 'Manes.08G084400' => 'mes', 'Manes.09G092600' => 'mes', 'Manes.15G027900' => 'mes', 'MBI04_g40948_MAGBIO' => 'mbi', 'MBI14_g12123_MAGBIO' => 'mbi', 'MBI18_g28915_MAGBIO' => 'mbi', 'MCO09G053' => 'mco', 'MCO11G782' => 'mco', 'MCO15G215' => 'mco', 'MD03G1088500' => 'mdo', 'MD03G1088600' => 'mdo', 'MD04G1130800' => 'mdo', 'MD09G1291700' => 'mdo', 'MD11G1097500' => 'mdo', 'MD11G1097600' => 'mdo', 'MD12G1143900' => 'mdo', 'MD13G1191400' => 'mdo', 'MD16G1191500' => 'mdo', 'Medtr1g085570' => 'mtr', 'Medtr1g104610' => 'mtr', 'Medtr2g097520' => 'mtr', 'Medtr4g021800' => 'mtr', 'Medtr4g021825' => 'mtr', 'Medtr4g064270' => 'mtr', 'Medtr4g064380' => 'mtr', 'Medtr7g062150' => 'mtr', 'MELO3C003138.2' => 'cme', 'MELO3C005187.2' => 'cme', 'MELO3C009252.2' => 'cme', 'MELO3C014481.2' => 'cme', 'MELO3C020616.2' => 'cme', 'MELO3C020617.2' => 'cme', 'MELO3C020618.2' => 'cme', 'Migut.G00328' => 'egut', 'Migut.J00320' => 'egut', 'Migut.L01000' => 'egut', 'Migut.L01953' => 'egut', 'MSTRG.10253' => 'ama', 'MSTRG.19077' => 'ama', 'MSTRG.26780' => 'ama', 'MSTRG.4023' => 'ama', 'MSTRG.5655' => 'ama', 'MSTRG.9992' => 'ama', 'Nitab4.5_0000043g0310' => 'nta', 'Nitab4.5_0000463g0080' => 'nta', 'Nitab4.5_0000705g0170' => 'nta', 'Nitab4.5_0001326g0060' => 'nta', 'Nitab4.5_0001628g0030' => 'nta', 'Nitab4.5_0002103g0110' => 'nta', 'Nitab4.5_0002946g0030' => 'nta', 'Nitab4.5_0004639g0030' => 'nta', 'Nn2g11149' => 'nnu', 'Nn2g13389' => 'nnu', 'Nn4g25326' => 'nnu', 'Nn4g26290' => 'nnu', 'Nn5g29865' => 'nnu', 'Oeu004163.1' => 'oeu', 'Oeu006901.1' => 'oeu', 'Oeu010096.1' => 'oeu', 'Oeu024340.1' => 'oeu', 'Oeu048369.1' => 'oeu', 'Os01g0973000' => 'osa', 'Os03g0273800' => 'osa', 'Os03g0701200' => 'osa', 'Os03g0834050' => 'osa', 'Os07g0634400' => 'osa', 'Peaxi162Scf00092g01414' => 'pax', 'Peaxi162Scf00165g00818' => 'pax', 'Peaxi162Scf00309g00516' => 'pax', 'Peaxi162Scf00774g00218' => 'pax', 'PGR004G1824' => 'pgr', 'PGR004G2606' => 'pgr', 'PGR031G2716' => 'pgr', 'PGR102G2460' => 'pgr', 'PGR142G2599' => 'pgr', 'PGSC0003DMG400000843' => 'stu', 'PGSC0003DMG400008829' => 'stu', 'PGSC0003DMG400030418' => 'stu', 'PGSC0003DMG400031834' => 'stu', 'PGSC0003DMG401028300' => 'stu', 'PGSC0003DMG402028300' => 'stu', 'Phvul.001G219300' => 'pvu', 'Phvul.007G056000' => 'pvu', 'Phvul.007G208000' => 'pvu', 'Phvul.008G119500' => 'pvu', 'Phvul.010G011200' => 'pvu', 'Phvul.010G014800' => 'pvu', 'Phvul.011G062900' => 'pvu', 'Phvul.L007043' => 'pvu', 'Potri.001G242300' => 'ptr', 'Potri.002G185300' => 'ptr', 'Potri.006G086900' => 'ptr', 'Potri.008G151700' => 'ptr', 'Potri.009G033500' => 'ptr', 'Potri.010G089300' => 'ptr', 'Potri.014G110800' => 'ptr', 'Pp3c27_8130' => 'ppa', 'Pp3c6_27410' => 'ppa', 'PRCOL_00001659' => 'pco', 'PRCOL_00001927' => 'pco', 'PRCOL_00003649' => 'pco', 'Prupe.1G011600' => 'ppe', 'Prupe.3G000800' => 'ppe', 'Prupe.3G001100' => 'ppe', 'Prupe.6G072700' => 'ppe', 'Prupe.6G072800' => 'ppe', 'Prupe.6G257300' => 'ppe', 'Prupe.8G033000' => 'ppe', 'Psat0s2633g0080' => 'psa', 'Psat0s3396g0080' => 'psa', 'Psat0s3396g0200' => 'psa', 'Psat3g139080' => 'psa', 'Psat5g285080' => 'psa', 'Psat6g157760' => 'psa', 'Psat6g208440' => 'psa', 'Psat7g215320' => 'psa', 'Psat7g215400' => 'psa', 'Psat7g235600' => 'psa', 'Psat7g235760' => 'psa', 'PSO063G4603' => 'pso', 'PSO210G0182' => 'pso', 'PSO210G0196' => 'pso', 'PSO339G0394' => 'pso', 'PSO339G4127' => 'pso', 'PSO513G0064' => 'pso', 'PSO761G0079' => 'pso', 'QL01p031003' => 'qlo', 'QL01p031078' => 'qlo', 'QL06p003004' => 'qlo', 'QL07p048731' => 'qlo', 'QL09p037427' => 'qlo', 'RcHm_v2.0_Chr3g0466361' => 'rch', 'RcHm_v2.0_Chr3g0485571' => 'rch', 'RcHm_v2.0_Chr4g0416551' => 'rch', 'RcHm_v2.0_Chr5g0065831' => 'rch', 'Rhsim01G0230500' => 'rsi', 'Rhsim05G0194000' => 'rsi', 'Rhsim08G0250400' => 'rsi', 'Sabra02G0131000' => 'sbr', 'Sabra06G0066300' => 'sbr', 'Sabra08G0115500' => 'sbr', 'Sabra09G0023900' => 'sbr', 'Sabra10G0054000' => 'sbr', 'Sabra14G0081500' => 'sbr', 'Sabra16G0147100' => 'sbr', 'SalBow2G2957' => 'sbo', 'SalBow4G3320' => 'sbo', 'SalBow8G1894' => 'sbo', 'Sc07g0007950' => 'sci', 'Sc12g0001360' => 'sci', 'Sc13g0004330' => 'sci', 'Sc20g0005010' => 'sci', 'Sed0000361' => 'sed', 'Sed0001706' => 'sed', 'Sed0002422' => 'sed', 'Sed0004029' => 'sed', 'Sed0004602' => 'sed', 'Sed0004943' => 'sed', 'Sed0008646' => 'sed', 'Sed0023313' => 'sed', 'Sed0024843' => 'sed', 'SEGI_00081' => 'sgi', 'SEGI_00947' => 'sgi', 'SEGI_04046' => 'sgi', 'SEGI_06880' => 'sgi', 'SEGI_09736' => 'sgi', 'SEGI_12741' => 'sgi', 'SEGI_14530' => 'sgi', 'SEGI_20705' => 'sgi', 'SEGI_26088' => 'sgi', 'SEGI_28323' => 'sgi', 'SEGI_33343' => 'sgi', 'SGA_v2.0_scaffold126G33775' => 'sas', 'SGA_v2.0_scaffold2G01337' => 'sas', 'SGA_v2.0_scaffold38G15006' => 'sas', 'SGA_v2.0_scaffold39G15264' => 'sas', 'SGA_v2.0_scaffold453G51880' => 'sas', 'SHI12696' => 'shi', 'SMO367G1096' => 'smo', 'Solyc01g068630.3' => 'sly', 'Solyc05g011880.3' => 'sly', 'Solyc06g076300.3' => 'sly', 'Solyc09g010940.4' => 'sly', 'Solyc09g075890.3' => 'sly', 'Sopen01g030560' => 'spe', 'Sopen05g006630' => 'spe', 'Sopen06g032720' => 'spe', 'Sopen09g005660' => 'spe', 'Sopen09g030690' => 'spe', 'Sp4g14540' => 'spa', 'Sp4g20030' => 'spa', 'Sp5g01320' => 'spa', 'Sp6g21170' => 'spa', 'Sp6g21180' => 'spa', 'Sp6g21190' => 'spa', 'Sp6g40220' => 'spa', 'TAR362G0122' => 'tar', 'TAR362G1338' => 'tar', 'TAR369G0590' => 'tar', 'TAR371G0824' => 'tar', 'TAR622G1429' => 'tar', 'TAR623G0734' => 'tar', 'TAR625G0441' => 'tar', 'TAR629G0976' => 'tar', 'TAR633G1195' => 'tar', 'TAR636G2660' => 'tar', 'THA.LOC104799440' => 'tha', 'THA.LOC104800966' => 'tha', 'THA.LOC104806559' => 'tha', 'THA.LOC104810765' => 'tha', 'THA.LOC104816266' => 'tha', 'THA.LOC104817419' => 'tha', 'THA.LOC104827021' => 'tha', 'Thecc.01G327400' => 'tca', 'Thecc.04G229200' => 'tca', 'Thecc.05G037400' => 'tca', 'Thecc.09G318600' => 'tca', 'Thecc.09G318700' => 'tca', 'Thhalv10006238m.g' => 'esa', 'Thhalv10014321m.g' => 'esa', 'Thhalv10014335m.g' => 'esa', 'Thhalv10015826m.g' => 'esa', 'Thhalv10017107m.g' => 'esa', 'Thhalv10017180m.g' => 'esa', 'Thhalv10029339m.g' => 'esa', 'TPR.G1699' => 'tpr', 'TPR.G23609' => 'tpr', 'TPR.G3081' => 'tpr', 'TPR.G40397' => 'tpr', 'TPR.G5522' => 'tpr', 'TPR.G5618' => 'tpr', 'TPR.G5626' => 'tpr', 'TWI09G1632' => 'twi', 'TWI23G1230' => 'twi', 'TWI53G1064' => 'twi', 'TWI59G0751' => 'twi', 'TWI74G0947' => 'twi', 'TWI77G0337' => 'twi', 'TWI79G1254' => 'twi', 'unitig_0.g2341' => 'ugi', 'unitig_26.g10006' => 'ugi', 'unitig_26.g10008' => 'ugi', 'unitig_26.g9192' => 'ugi', 'vmacro14547' => 'vma', 'vmacro15333' => 'vma', 'vmacro18743' => 'vma', 'vmacro20166' => 'vma', 'VMungo0331G0523' => 'vmu', 'VMungo0331G1202' => 'vmu', 'VMungo0720G1228' => 'vmu', 'VMungo0720G1514' => 'vmu', 'VMungo1080G0169' => 'vmu', 'VMungo1127G1475' => 'vmu', 'VMungo1383G1208' => 'vmu', 'VMungo1383G1698' => 'vmu', 'Zm00001eb012270' => 'zma', 'Zm00001eb054100' => 'zma', 'Zm00001eb063350' => 'zma', 'Zm00001eb328560' => 'zma', 'Zm00001eb342820' => 'zma', 'Zm00001eb362210' => 'zma', 'Zm00001eb397730' => 'zma', 'Zm00001eb399750' => 'zma' ) $gf_id = 'HOM05D000959' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000959' ) $data_identifier = 'HOM05D000959' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 5, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 5, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 10, 'mbi' => (int) 3, 'mco' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 2, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 3, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 11, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399750' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000959', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '622', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p07100' => 'bna', 'A03p11720' => 'bna', 'A05p08300' => 'bna', 'A05p13380' => 'bna', 'A09p54130' => 'bna', 'A10p16690' => 'bna', 'A10p16700' => 'bna', 'A10p33390' => 'bna', 'Aa31LG10G16020' => 'aar', 'Aa31LG1G11810' => 'aar', 'Aa31LG1G11830' => 'aar', 'Aa31LG1G22510' => 'aar', 'Aa31LG5G4890' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5793' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2310' => 'aag', 'Actinidia08499' => 'ach', 'Actinidia11262' => 'ach', 'Actinidia23926' => 'ach', 'Actinidia34420' => 'ach', 'Actinidia36970' => 'ach', 'Ah.02g111220' => 'amhyb', 'Ah.15g097750' => 'amhyb', 'AL4G27500' => 'aly', 'AL6G11470' => 'aly', 'AL8G35950' => 'aly', 'AL8G35960' => 'aly', 'AL8G35970' => 'aly', 'Aqoxy1G00912' => 'aox', 'Aqoxy2G02253' => 'aox', 'Aqoxy2G02411' => 'aox', 'Aqoxy5G00485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BZ66YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K8ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM4FUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6BF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HFV7XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25JBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0YNNV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MAKK6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P70IT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP2Z6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V61LZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YWP64R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3S9AI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7PGHH' => 'arhy', 'AT2G32150' => 'ath', 'AT3G62040' => 'ath', 'AT5G02230' => 'ath', 'AT5G59480' => 'ath', 'AT5G59490' => 'ath', 'ATR0332G060' => 'atr', 'ATR0559G190' => 'atr', 'ATR0693G294' => 'atr', 'Atru.chr3.3975' => 'acertr', 'Atru.chr3.3976' => 'acertr', 'Atru.chr3.3977' => 'acertr', 'Atru.chr4.2498' => 'acertr', 'Atru.chr5.838' => 'acertr', 'Atru.chr8.1990' => 'acertr', 'Atru.chr8.1991' => 'acertr', 'Atru.chr8.1992' => 'acertr', 'AUR62001759' => 'cqu', 'AUR62009545' => 'cqu', 'AUR62010474' => 'cqu', 'AUR62025820' => 'cqu', 'AUR62030422' => 'cqu', 'AUR62033605' => 'cqu', 'AUR62038615' => 'cqu', 'AUR62041347' => 'cqu', 'BcaB01g04574' => 'bca', 'BcaB02g09263' => 'bca', 'BcaB02g10453' => 'bca', 'BcaB05g22513' => 'bca', 'BcaB08g36253' => 'bca', 'BcaB08g36254' => 'bca', 'BcaC01g06519' => 'bca', 'BcaC02g11889' => 'bca', 'BcaC03g14010' => 'bca', 'BcaC03g18439' => 'bca', 'BcaC04g19765' => 'bca', 'BcaC09g48432' => 'bca', 'BcaNung07302' => 'bca', 'BolC2t06040H' => 'bol', 'BolC2t07346H' => 'bol', 'BolC3t13817H' => 'bol', 'BolC4t22625H' => 'bol', 'BolC4t23297H' => 'bol', 'BolC8t51278H' => 'bol', 'BolC9t58050H' => 'bol', 'BolC9t58051H' => 'bol', 'BolC9t60163H' => 'bol', 'BraA02t04712Z' => 'bra', 'BraA02t05791Z' => 'bra', 'BraA03t10483Z' => 'bra', 'BraA05t19795Z' => 'bra', 'BraA05t20276Z' => 'bra', 'BraA09t40827Z' => 'bra', 'BraA10t43750Z' => 'bra', 'BraA10t43751Z' => 'bra', 'BraA10t45370Z' => 'bra', 'C02p00400' => 'bna', 'C02p12460' => 'bna', 'C03p13680' => 'bna', 'C04p10270' => 'bna', 'C04p17500' => 'bna', 'C08p37010' => 'bna', 'C09p51880' => 'bna', 'C09p51890' => 'bna', 'C09p74300' => 'bna', 'CAN.G179.26' => 'can', 'CAN.G3384.1' => 'can', 'CAN.G394.68' => 'can', 'CAN.G907.13' => 'can', 'CANSAT11G0012' => 'cansat', 'CANSAT25G1586' => 'cansat', 'CANSAT35G0735' => 'cansat', 'CANSAT54G0556' => 'cansat', 'CANSAT64G0356' => 'cansat', 'CANSAT78G2042' => 'cansat', 'CARHR125920' => 'chi', 'CARHR131910' => 'chi', 'CARHR172390' => 'chi', 'CARHR211140' => 'chi', 'CARHR285850' => 'chi', 'CARHR285860' => 'chi', 'Carub.0004s1347' => 'cru', 'Carub.0004s1960' => 'cru', 'Carub.0005s2880' => 'cru', 'Carub.0006s0107' => 'cru', 'Carub.0008s2015' => 'cru', 'Carub.0008s2016' => 'cru', 'Carub.0008s2017' => 'cru', 'Ca_01315_v3' => 'car', 'Ca_05063_v3' => 'car', 'Ca_10231_v3' => 'car', 'Ca_10913_v3' => 'car', 'Ca_19156_v3' => 'car', 'Ca_23644_v3' => 'car', 'Ca_26735_v3' => 'car', 'Cc01_g13130' => 'ccan', 'Cc02_g21690' => 'ccan', 'Cc03_g03600' => 'ccan', 'Cc06_g02510' => 'ccan', 'CDE02G1265' => 'cde', 'CDE05G0415' => 'cde', 'CDE08G1082' => 'cde', 'Cfa005780' => 'cfa', 'Cfa011522' => 'cfa', 'Cfa011523' => 'cfa', 'Cfa015627' => 'cfa', 'Cfa017359' => 'cfa', 'Ciclev10005687m.g' => 'ccl', 'Ciclev10012173m.g' => 'ccl', 'Ciclev10021621m.g' => 'ccl', 'Ciclev10028968m.g' => 'ccl', 'Ciclev10029907m.g' => 'ccl', 'CiPaw.01G164800' => 'cil', 'CiPaw.07G083700' => 'cil', 'CiPaw.07G127000' => 'cil', 'CiPaw.07G136900' => 'cil', 'CiPaw.08G081700' => 'cil', 'CiPaw.09G194600' => 'cil', 'CiPaw.10G146500' => 'cil', 'CiPaw.13G091500' => 'cil', 'CiPaw.13G091600' => 'cil', 'ClCG00G003390' => 'cla', 'ClCG01G007220' => 'cla', 'ClCG03G001370' => 'cla', 'ClCG04G008100' => 'cla', 'ClCG06G006110' => 'cla', 'ClCG06G006130' => 'cla', 'ClCG10G021210' => 'cla', 'COL.COLO4_07648' => 'col', 'COL.COLO4_07650' => 'col', 'COL.COLO4_07651' => 'col', 'COL.COLO4_14780' => 'col', 'COL.COLO4_18546' => 'col', 'COL.COLO4_18547' => 'col', 'COL.COLO4_23103' => 'col', 'COL.COLO4_30419' => 'col', 'COL.COLO4_34232' => 'col', 'Cpa.g.sc169.20' => 'cpa', 'Cpa.g.sc57.45' => 'cpa', 'Cpa.g.sc58.124' => 'cpa', 'Cpa.g.sc58.125' => 'cpa', 'Cpa.g.sc81.118' => 'cpa', 'Cpa.g.sc81.119' => 'cpa', 'Cre12.g524700' => 'cre', 'CsaV3_1G034430' => 'csa', 'CsaV3_1G034440' => 'csa', 'CsaV3_1G034450' => 'csa', 'CsaV3_3G034830' => 'csa', 'CsaV3_4G025090' => 'csa', 'CsaV3_5G018660' => 'csa', 'CsaV3_6G038160' => 'csa', 'CSS0003447' => 'camsi', 'CSS0017840' => 'camsi', 'CSS0019260' => 'camsi', 'CSS0040375' => 'camsi', 'CSS0042533' => 'camsi', 'DCAR_005960' => 'dca', 'DCAR_012104' => 'dca', 'DCAR_012105' => 'dca', 'DCAR_012293' => 'dca', 'DCAR_015632' => 'dca', 'DCAR_024602' => 'dca', 'DCAR_028752' => 'dca', 'Dinv06261' => 'din', 'Dinv13982' => 'din', 'Dinv17029' => 'din', 'Dinv18463' => 'din', 'Dinv33181' => 'din', 'Dinv35585' => 'din', 'Dinv37161' => 'din', 'Dinv42977' => 'din', 'Dinv43122' => 'din', 'Dinv44517' => 'din', 'Duzib093G0256' => 'dzi', 'Duzib106G1254' => 'dzi', 'Duzib128G1789' => 'dzi', 'Duzib133G0633' => 'dzi', 'Duzib138G0510' => 'dzi', 'Duzib150G1084' => 'dzi', 'Duzib168G0488' => 'dzi', 'Duzib168G1523' => 'dzi', 'Duzib170G0133' => 'dzi', 'ECA234G1433' => 'eca', 'ECA236G1432' => 'eca', 'ECA236G2256' => 'eca', 'ECA236G2365' => 'eca', 'ECA236G4830' => 'eca', 'ECA248G1505' => 'eca', 'EL10Ac3g06431' => 'bvu', 'EL10Ac5g12577' => 'bvu', 'EL10Ac6g13533' => 'bvu', 'EL10Ac7g16045' => 'bvu', 'Eucgr.A01281' => 'egr', 'Eucgr.B02326' => 'egr', 'Eucgr.H03532' => 'egr', 'Eucgr.K00553' => 'egr', 'Eucgr.K03116' => 'egr', 'FAN02G3963' => 'fan', 'FAN05G0438' => 'fan', 'FAN09G2434' => 'fan', 'FAN12G3984' => 'fan', 'FAN14G0798' => 'fan', 'FAN17G0652' => 'fan', 'FAN19G1988' => 'fan', 'FAN22G0632' => 'fan', 'FAN23G0387' => 'fan', 'FAN26G1323' => 'fan', 'FAN28G0666' => 'fan', 'FvH4_1g26080' => 'fve', 'FvH4_3g36780' => 'fve', 'FvH4_4g15270' => 'fve', 'FvH4_6g13490' => 'fve', 'Glyma.01G098700' => 'gma', 'Glyma.03G065900' => 'gma', 'Glyma.03G073754' => 'gma', 'Glyma.03G073758' => 'gma', 'Glyma.03G083200' => 'gma', 'Glyma.03G225500' => 'gma', 'Glyma.05G037766' => 'gma', 'Glyma.07G133500' => 'gma', 'Glyma.10G139400' => 'gma', 'Glyma.10G248900' => 'gma', 'Glyma.11G137800' => 'gma', 'Glyma.12G061300' => 'gma', 'Glyma.13G337900' => 'gma', 'Glyma.15G036600' => 'gma', 'Glyma.18G182800' => 'gma', 'Glyma.19G222500' => 'gma', 'Glyma.20G144800' => 'gma', 'Gohir.A01G222000' => 'ghi', 'Gohir.A03G044000' => 'ghi', 'Gohir.A03G044100' => 'ghi', 'Gohir.A04G083100' => 'ghi', 'Gohir.A07G127200' => 'ghi', 'Gohir.A07G132400' => 'ghi', 'Gohir.A08G000700' => 'ghi', 'Gohir.A11G327300' => 'ghi', 'Gohir.D01G211500' => 'ghi', 'Gohir.D03G123400' => 'ghi', 'Gohir.D03G123500' => 'ghi', 'Gohir.D04G121800' => 'ghi', 'Gohir.D07G131500' => 'ghi', 'Gohir.D07G136600' => 'ghi', 'Gohir.D08G011600' => 'ghi', 'Gohir.D11G346200' => 'ghi', 'Gorai.001G142800' => 'gra', 'Gorai.001G148700' => 'gra', 'Gorai.002G257300' => 'gra', 'Gorai.003G130000' => 'gra', 'Gorai.003G130100' => 'gra', 'Gorai.004G005300' => 'gra', 'Gorai.007G376500' => 'gra', 'Gorai.012G104700' => 'gra', 'GSVIVG01017946001' => 'vvi', 'GSVIVG01024928001' => 'vvi', 'GSVIVG01028227001' => 'vvi', 'GSVIVG01034151001' => 'vvi', 'HanXRQChr05g0135031' => 'han', 'HanXRQChr05g0135041' => 'han', 'HanXRQChr05g0140021' => 'han', 'HanXRQChr06g0178981' => 'han', 'HanXRQChr07g0188251' => 'han', 'HanXRQChr08g0235311' => 'han', 'HanXRQChr09g0271011' => 'han', 'HanXRQChr10g0293321' => 'han', 'HanXRQChr13g0388171' => 'han', 'Haze_00916' => 'cav', 'Haze_05063' => 'cav', 'Haze_20814' => 'cav', 'Haze_24128' => 'cav', 'Hma1.2p1_0745F.1_g212010' => 'hma', 'Hma1.2p1_0757F.1_g213260' => 'hma', 'Hma1.2p1_0936F.1_g238840' => 'hma', 'Hma1.2p1_1735F.1_g299890' => 'hma', 'Hma1.2p1_1861F.1_g305685' => 'hma', 'HPP92_003397' => 'vpl', 'HPP92_012597' => 'vpl', 'HPP92_015520' => 'vpl', 'HPP92_015539' => 'vpl', 'HPP92_020373' => 'vpl', 'Hund04938' => 'sun', 'Hund10677' => 'sun', 'Hund11033' => 'sun', 'Hund12155' => 'sun', 'Lalb_Chr01g0022551' => 'lal', 'Lalb_Chr03g0042341' => 'lal', 'Lalb_Chr07g0192931' => 'lal', 'Lalb_Chr12g0209551' => 'lal', 'Lalb_Chr19g0125251' => 'lal', 'Lalb_Chr19g0137891' => 'lal', 'Lalb_Chr21g0304641' => 'lal', 'Lalb_Chr21g0309881' => 'lal', 'Lj1A5T12' => 'lonja', 'Lj1C148G10' => 'lonja', 'Lj2A93T83' => 'lonja', 'Lj3A738G68' => 'lonja', 'Lj3C966T1' => 'lonja', 'Lj3g0018958' => 'lja', 'Lj3g0021831' => 'lja', 'Lj3g0025443' => 'lja', 'Lj4g0026809' => 'lja', 'Lj5g0012558' => 'lja', 'Lj5g0021586' => 'lja', 'Lsat_1_v5_gn_5_156840' => 'lsa', 'Lsat_1_v5_gn_8_73460' => 'lsa', 'Lsat_1_v5_gn_8_73481' => 'lsa', 'Lsat_1_v5_gn_9_31601' => 'lsa', 'Lsat_1_v5_gn_9_77320' => 'lsa', 'Manes.01G171300' => 'mes', 'Manes.01G171400' => 'mes', 'Manes.01G236100' => 'mes', 'Manes.02G130500' => 'mes', 'Manes.02G130600' => 'mes', 'Manes.03G180200' => 'mes', 'Manes.05G007000' => 'mes', 'Manes.08G084400' => 'mes', 'Manes.09G092600' => 'mes', 'Manes.15G027900' => 'mes', 'MBI04_g40948_MAGBIO' => 'mbi', 'MBI14_g12123_MAGBIO' => 'mbi', 'MBI18_g28915_MAGBIO' => 'mbi', 'MCO09G053' => 'mco', 'MCO11G782' => 'mco', 'MCO15G215' => 'mco', 'MD03G1088500' => 'mdo', 'MD03G1088600' => 'mdo', 'MD04G1130800' => 'mdo', 'MD09G1291700' => 'mdo', 'MD11G1097500' => 'mdo', 'MD11G1097600' => 'mdo', 'MD12G1143900' => 'mdo', 'MD13G1191400' => 'mdo', 'MD16G1191500' => 'mdo', 'Medtr1g085570' => 'mtr', 'Medtr1g104610' => 'mtr', 'Medtr2g097520' => 'mtr', 'Medtr4g021800' => 'mtr', 'Medtr4g021825' => 'mtr', 'Medtr4g064270' => 'mtr', 'Medtr4g064380' => 'mtr', 'Medtr7g062150' => 'mtr', 'MELO3C003138.2' => 'cme', 'MELO3C005187.2' => 'cme', 'MELO3C009252.2' => 'cme', 'MELO3C014481.2' => 'cme', 'MELO3C020616.2' => 'cme', 'MELO3C020617.2' => 'cme', 'MELO3C020618.2' => 'cme', 'Migut.G00328' => 'egut', 'Migut.J00320' => 'egut', 'Migut.L01000' => 'egut', 'Migut.L01953' => 'egut', 'MSTRG.10253' => 'ama', 'MSTRG.19077' => 'ama', 'MSTRG.26780' => 'ama', 'MSTRG.4023' => 'ama', 'MSTRG.5655' => 'ama', 'MSTRG.9992' => 'ama', 'Nitab4.5_0000043g0310' => 'nta', 'Nitab4.5_0000463g0080' => 'nta', 'Nitab4.5_0000705g0170' => 'nta', 'Nitab4.5_0001326g0060' => 'nta', 'Nitab4.5_0001628g0030' => 'nta', 'Nitab4.5_0002103g0110' => 'nta', 'Nitab4.5_0002946g0030' => 'nta', 'Nitab4.5_0004639g0030' => 'nta', 'Nn2g11149' => 'nnu', 'Nn2g13389' => 'nnu', 'Nn4g25326' => 'nnu', 'Nn4g26290' => 'nnu', 'Nn5g29865' => 'nnu', 'Oeu004163.1' => 'oeu', 'Oeu006901.1' => 'oeu', 'Oeu010096.1' => 'oeu', 'Oeu024340.1' => 'oeu', 'Oeu048369.1' => 'oeu', 'Os01g0973000' => 'osa', 'Os03g0273800' => 'osa', 'Os03g0701200' => 'osa', 'Os03g0834050' => 'osa', 'Os07g0634400' => 'osa', 'Peaxi162Scf00092g01414' => 'pax', 'Peaxi162Scf00165g00818' => 'pax', 'Peaxi162Scf00309g00516' => 'pax', 'Peaxi162Scf00774g00218' => 'pax', 'PGR004G1824' => 'pgr', 'PGR004G2606' => 'pgr', 'PGR031G2716' => 'pgr', 'PGR102G2460' => 'pgr', 'PGR142G2599' => 'pgr', 'PGSC0003DMG400000843' => 'stu', 'PGSC0003DMG400008829' => 'stu', 'PGSC0003DMG400030418' => 'stu', 'PGSC0003DMG400031834' => 'stu', 'PGSC0003DMG401028300' => 'stu', 'PGSC0003DMG402028300' => 'stu', 'Phvul.001G219300' => 'pvu', 'Phvul.007G056000' => 'pvu', 'Phvul.007G208000' => 'pvu', 'Phvul.008G119500' => 'pvu', 'Phvul.010G011200' => 'pvu', 'Phvul.010G014800' => 'pvu', 'Phvul.011G062900' => 'pvu', 'Phvul.L007043' => 'pvu', 'Potri.001G242300' => 'ptr', 'Potri.002G185300' => 'ptr', 'Potri.006G086900' => 'ptr', 'Potri.008G151700' => 'ptr', 'Potri.009G033500' => 'ptr', 'Potri.010G089300' => 'ptr', 'Potri.014G110800' => 'ptr', 'Pp3c27_8130' => 'ppa', 'Pp3c6_27410' => 'ppa', 'PRCOL_00001659' => 'pco', 'PRCOL_00001927' => 'pco', 'PRCOL_00003649' => 'pco', 'Prupe.1G011600' => 'ppe', 'Prupe.3G000800' => 'ppe', 'Prupe.3G001100' => 'ppe', 'Prupe.6G072700' => 'ppe', 'Prupe.6G072800' => 'ppe', 'Prupe.6G257300' => 'ppe', 'Prupe.8G033000' => 'ppe', 'Psat0s2633g0080' => 'psa', 'Psat0s3396g0080' => 'psa', 'Psat0s3396g0200' => 'psa', 'Psat3g139080' => 'psa', 'Psat5g285080' => 'psa', 'Psat6g157760' => 'psa', 'Psat6g208440' => 'psa', 'Psat7g215320' => 'psa', 'Psat7g215400' => 'psa', 'Psat7g235600' => 'psa', 'Psat7g235760' => 'psa', 'PSO063G4603' => 'pso', 'PSO210G0182' => 'pso', 'PSO210G0196' => 'pso', 'PSO339G0394' => 'pso', 'PSO339G4127' => 'pso', 'PSO513G0064' => 'pso', 'PSO761G0079' => 'pso', 'QL01p031003' => 'qlo', 'QL01p031078' => 'qlo', 'QL06p003004' => 'qlo', 'QL07p048731' => 'qlo', 'QL09p037427' => 'qlo', 'RcHm_v2.0_Chr3g0466361' => 'rch', 'RcHm_v2.0_Chr3g0485571' => 'rch', 'RcHm_v2.0_Chr4g0416551' => 'rch', 'RcHm_v2.0_Chr5g0065831' => 'rch', 'Rhsim01G0230500' => 'rsi', 'Rhsim05G0194000' => 'rsi', 'Rhsim08G0250400' => 'rsi', 'Sabra02G0131000' => 'sbr', 'Sabra06G0066300' => 'sbr', 'Sabra08G0115500' => 'sbr', 'Sabra09G0023900' => 'sbr', 'Sabra10G0054000' => 'sbr', 'Sabra14G0081500' => 'sbr', 'Sabra16G0147100' => 'sbr', 'SalBow2G2957' => 'sbo', 'SalBow4G3320' => 'sbo', 'SalBow8G1894' => 'sbo', 'Sc07g0007950' => 'sci', 'Sc12g0001360' => 'sci', 'Sc13g0004330' => 'sci', 'Sc20g0005010' => 'sci', 'Sed0000361' => 'sed', 'Sed0001706' => 'sed', 'Sed0002422' => 'sed', 'Sed0004029' => 'sed', 'Sed0004602' => 'sed', 'Sed0004943' => 'sed', 'Sed0008646' => 'sed', 'Sed0023313' => 'sed', 'Sed0024843' => 'sed', 'SEGI_00081' => 'sgi', 'SEGI_00947' => 'sgi', 'SEGI_04046' => 'sgi', 'SEGI_06880' => 'sgi', 'SEGI_09736' => 'sgi', 'SEGI_12741' => 'sgi', 'SEGI_14530' => 'sgi', 'SEGI_20705' => 'sgi', 'SEGI_26088' => 'sgi', 'SEGI_28323' => 'sgi', 'SEGI_33343' => 'sgi', 'SGA_v2.0_scaffold126G33775' => 'sas', 'SGA_v2.0_scaffold2G01337' => 'sas', 'SGA_v2.0_scaffold38G15006' => 'sas', 'SGA_v2.0_scaffold39G15264' => 'sas', 'SGA_v2.0_scaffold453G51880' => 'sas', 'SHI12696' => 'shi', 'SMO367G1096' => 'smo', 'Solyc01g068630.3' => 'sly', 'Solyc05g011880.3' => 'sly', 'Solyc06g076300.3' => 'sly', 'Solyc09g010940.4' => 'sly', 'Solyc09g075890.3' => 'sly', 'Sopen01g030560' => 'spe', 'Sopen05g006630' => 'spe', 'Sopen06g032720' => 'spe', 'Sopen09g005660' => 'spe', 'Sopen09g030690' => 'spe', 'Sp4g14540' => 'spa', 'Sp4g20030' => 'spa', 'Sp5g01320' => 'spa', 'Sp6g21170' => 'spa', 'Sp6g21180' => 'spa', 'Sp6g21190' => 'spa', 'Sp6g40220' => 'spa', 'TAR362G0122' => 'tar', 'TAR362G1338' => 'tar', 'TAR369G0590' => 'tar', 'TAR371G0824' => 'tar', 'TAR622G1429' => 'tar', 'TAR623G0734' => 'tar', 'TAR625G0441' => 'tar', 'TAR629G0976' => 'tar', 'TAR633G1195' => 'tar', 'TAR636G2660' => 'tar', 'THA.LOC104799440' => 'tha', 'THA.LOC104800966' => 'tha', 'THA.LOC104806559' => 'tha', 'THA.LOC104810765' => 'tha', 'THA.LOC104816266' => 'tha', 'THA.LOC104817419' => 'tha', 'THA.LOC104827021' => 'tha', 'Thecc.01G327400' => 'tca', 'Thecc.04G229200' => 'tca', 'Thecc.05G037400' => 'tca', 'Thecc.09G318600' => 'tca', 'Thecc.09G318700' => 'tca', 'Thhalv10006238m.g' => 'esa', 'Thhalv10014321m.g' => 'esa', 'Thhalv10014335m.g' => 'esa', 'Thhalv10015826m.g' => 'esa', 'Thhalv10017107m.g' => 'esa', 'Thhalv10017180m.g' => 'esa', 'Thhalv10029339m.g' => 'esa', 'TPR.G1699' => 'tpr', 'TPR.G23609' => 'tpr', 'TPR.G3081' => 'tpr', 'TPR.G40397' => 'tpr', 'TPR.G5522' => 'tpr', 'TPR.G5618' => 'tpr', 'TPR.G5626' => 'tpr', 'TWI09G1632' => 'twi', 'TWI23G1230' => 'twi', 'TWI53G1064' => 'twi', 'TWI59G0751' => 'twi', 'TWI74G0947' => 'twi', 'TWI77G0337' => 'twi', 'TWI79G1254' => 'twi', 'unitig_0.g2341' => 'ugi', 'unitig_26.g10006' => 'ugi', 'unitig_26.g10008' => 'ugi', 'unitig_26.g9192' => 'ugi', 'vmacro14547' => 'vma', 'vmacro15333' => 'vma', 'vmacro18743' => 'vma', 'vmacro20166' => 'vma', 'VMungo0331G0523' => 'vmu', 'VMungo0331G1202' => 'vmu', 'VMungo0720G1228' => 'vmu', 'VMungo0720G1514' => 'vmu', 'VMungo1080G0169' => 'vmu', 'VMungo1127G1475' => 'vmu', 'VMungo1383G1208' => 'vmu', 'VMungo1383G1698' => 'vmu', 'Zm00001eb012270' => 'zma', 'Zm00001eb054100' => 'zma', 'Zm00001eb063350' => 'zma', 'Zm00001eb328560' => 'zma', 'Zm00001eb342820' => 'zma', 'Zm00001eb362210' => 'zma', 'Zm00001eb397730' => 'zma', 'Zm00001eb399750' => 'zma' ), 'gf_id' => 'HOM05D000959', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000959' ), 'data_identifier' => 'HOM05D000959', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000959', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '622', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p07100' => 'bna', 'A03p11720' => 'bna', 'A05p08300' => 'bna', 'A05p13380' => 'bna', 'A09p54130' => 'bna', 'A10p16690' => 'bna', 'A10p16700' => 'bna', 'A10p33390' => 'bna', 'Aa31LG10G16020' => 'aar', 'Aa31LG1G11810' => 'aar', 'Aa31LG1G11830' => 'aar', 'Aa31LG1G22510' => 'aar', 'Aa31LG5G4890' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5793' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2310' => 'aag', 'Actinidia08499' => 'ach', 'Actinidia11262' => 'ach', 'Actinidia23926' => 'ach', 'Actinidia34420' => 'ach', 'Actinidia36970' => 'ach', 'Ah.02g111220' => 'amhyb', 'Ah.15g097750' => 'amhyb', 'AL4G27500' => 'aly', 'AL6G11470' => 'aly', 'AL8G35950' => 'aly', 'AL8G35960' => 'aly', 'AL8G35970' => 'aly', 'Aqoxy1G00912' => 'aox', 'Aqoxy2G02253' => 'aox', 'Aqoxy2G02411' => 'aox', 'Aqoxy5G00485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BZ66YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K8ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM4FUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6BF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HFV7XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25JBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0YNNV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MAKK6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P70IT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP2Z6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V61LZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YWP64R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3S9AI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7PGHH' => 'arhy', 'AT2G32150' => 'ath', 'AT3G62040' => 'ath', 'AT5G02230' => 'ath', 'AT5G59480' => 'ath', 'AT5G59490' => 'ath', 'ATR0332G060' => 'atr', 'ATR0559G190' => 'atr', 'ATR0693G294' => 'atr', 'Atru.chr3.3975' => 'acertr', 'Atru.chr3.3976' => 'acertr', 'Atru.chr3.3977' => 'acertr', 'Atru.chr4.2498' => 'acertr', 'Atru.chr5.838' => 'acertr', 'Atru.chr8.1990' => 'acertr', 'Atru.chr8.1991' => 'acertr', 'Atru.chr8.1992' => 'acertr', 'AUR62001759' => 'cqu', 'AUR62009545' => 'cqu', 'AUR62010474' => 'cqu', 'AUR62025820' => 'cqu', 'AUR62030422' => 'cqu', 'AUR62033605' => 'cqu', 'AUR62038615' => 'cqu', 'AUR62041347' => 'cqu', 'BcaB01g04574' => 'bca', 'BcaB02g09263' => 'bca', 'BcaB02g10453' => 'bca', 'BcaB05g22513' => 'bca', 'BcaB08g36253' => 'bca', 'BcaB08g36254' => 'bca', 'BcaC01g06519' => 'bca', 'BcaC02g11889' => 'bca', 'BcaC03g14010' => 'bca', 'BcaC03g18439' => 'bca', 'BcaC04g19765' => 'bca', 'BcaC09g48432' => 'bca', 'BcaNung07302' => 'bca', 'BolC2t06040H' => 'bol', 'BolC2t07346H' => 'bol', 'BolC3t13817H' => 'bol', 'BolC4t22625H' => 'bol', 'BolC4t23297H' => 'bol', 'BolC8t51278H' => 'bol', 'BolC9t58050H' => 'bol', 'BolC9t58051H' => 'bol', 'BolC9t60163H' => 'bol', 'BraA02t04712Z' => 'bra', 'BraA02t05791Z' => 'bra', 'BraA03t10483Z' => 'bra', 'BraA05t19795Z' => 'bra', 'BraA05t20276Z' => 'bra', 'BraA09t40827Z' => 'bra', 'BraA10t43750Z' => 'bra', 'BraA10t43751Z' => 'bra', 'BraA10t45370Z' => 'bra', 'C02p00400' => 'bna', 'C02p12460' => 'bna', 'C03p13680' => 'bna', 'C04p10270' => 'bna', 'C04p17500' => 'bna', 'C08p37010' => 'bna', 'C09p51880' => 'bna', 'C09p51890' => 'bna', 'C09p74300' => 'bna', 'CAN.G179.26' => 'can', 'CAN.G3384.1' => 'can', 'CAN.G394.68' => 'can', 'CAN.G907.13' => 'can', 'CANSAT11G0012' => 'cansat', 'CANSAT25G1586' => 'cansat', 'CANSAT35G0735' => 'cansat', 'CANSAT54G0556' => 'cansat', 'CANSAT64G0356' => 'cansat', 'CANSAT78G2042' => 'cansat', 'CARHR125920' => 'chi', 'CARHR131910' => 'chi', 'CARHR172390' => 'chi', 'CARHR211140' => 'chi', 'CARHR285850' => 'chi', 'CARHR285860' => 'chi', 'Carub.0004s1347' => 'cru', 'Carub.0004s1960' => 'cru', 'Carub.0005s2880' => 'cru', 'Carub.0006s0107' => 'cru', 'Carub.0008s2015' => 'cru', 'Carub.0008s2016' => 'cru', 'Carub.0008s2017' => 'cru', 'Ca_01315_v3' => 'car', 'Ca_05063_v3' => 'car', 'Ca_10231_v3' => 'car', 'Ca_10913_v3' => 'car', 'Ca_19156_v3' => 'car', 'Ca_23644_v3' => 'car', 'Ca_26735_v3' => 'car', 'Cc01_g13130' => 'ccan', 'Cc02_g21690' => 'ccan', 'Cc03_g03600' => 'ccan', 'Cc06_g02510' => 'ccan', 'CDE02G1265' => 'cde', 'CDE05G0415' => 'cde', 'CDE08G1082' => 'cde', 'Cfa005780' => 'cfa', 'Cfa011522' => 'cfa', 'Cfa011523' => 'cfa', 'Cfa015627' => 'cfa', 'Cfa017359' => 'cfa', 'Ciclev10005687m.g' => 'ccl', 'Ciclev10012173m.g' => 'ccl', 'Ciclev10021621m.g' => 'ccl', 'Ciclev10028968m.g' => 'ccl', 'Ciclev10029907m.g' => 'ccl', 'CiPaw.01G164800' => 'cil', 'CiPaw.07G083700' => 'cil', 'CiPaw.07G127000' => 'cil', 'CiPaw.07G136900' => 'cil', 'CiPaw.08G081700' => 'cil', 'CiPaw.09G194600' => 'cil', 'CiPaw.10G146500' => 'cil', 'CiPaw.13G091500' => 'cil', 'CiPaw.13G091600' => 'cil', 'ClCG00G003390' => 'cla', 'ClCG01G007220' => 'cla', 'ClCG03G001370' => 'cla', 'ClCG04G008100' => 'cla', 'ClCG06G006110' => 'cla', 'ClCG06G006130' => 'cla', 'ClCG10G021210' => 'cla', 'COL.COLO4_07648' => 'col', 'COL.COLO4_07650' => 'col', 'COL.COLO4_07651' => 'col', 'COL.COLO4_14780' => 'col', 'COL.COLO4_18546' => 'col', 'COL.COLO4_18547' => 'col', 'COL.COLO4_23103' => 'col', 'COL.COLO4_30419' => 'col', 'COL.COLO4_34232' => 'col', 'Cpa.g.sc169.20' => 'cpa', 'Cpa.g.sc57.45' => 'cpa', 'Cpa.g.sc58.124' => 'cpa', 'Cpa.g.sc58.125' => 'cpa', 'Cpa.g.sc81.118' => 'cpa', 'Cpa.g.sc81.119' => 'cpa', 'Cre12.g524700' => 'cre', 'CsaV3_1G034430' => 'csa', 'CsaV3_1G034440' => 'csa', 'CsaV3_1G034450' => 'csa', 'CsaV3_3G034830' => 'csa', 'CsaV3_4G025090' => 'csa', 'CsaV3_5G018660' => 'csa', 'CsaV3_6G038160' => 'csa', 'CSS0003447' => 'camsi', 'CSS0017840' => 'camsi', 'CSS0019260' => 'camsi', 'CSS0040375' => 'camsi', 'CSS0042533' => 'camsi', 'DCAR_005960' => 'dca', 'DCAR_012104' => 'dca', 'DCAR_012105' => 'dca', 'DCAR_012293' => 'dca', 'DCAR_015632' => 'dca', 'DCAR_024602' => 'dca', 'DCAR_028752' => 'dca', 'Dinv06261' => 'din', 'Dinv13982' => 'din', 'Dinv17029' => 'din', 'Dinv18463' => 'din', 'Dinv33181' => 'din', 'Dinv35585' => 'din', 'Dinv37161' => 'din', 'Dinv42977' => 'din', 'Dinv43122' => 'din', 'Dinv44517' => 'din', 'Duzib093G0256' => 'dzi', 'Duzib106G1254' => 'dzi', 'Duzib128G1789' => 'dzi', 'Duzib133G0633' => 'dzi', 'Duzib138G0510' => 'dzi', 'Duzib150G1084' => 'dzi', 'Duzib168G0488' => 'dzi', 'Duzib168G1523' => 'dzi', 'Duzib170G0133' => 'dzi', 'ECA234G1433' => 'eca', 'ECA236G1432' => 'eca', 'ECA236G2256' => 'eca', 'ECA236G2365' => 'eca', 'ECA236G4830' => 'eca', 'ECA248G1505' => 'eca', 'EL10Ac3g06431' => 'bvu', 'EL10Ac5g12577' => 'bvu', 'EL10Ac6g13533' => 'bvu', 'EL10Ac7g16045' => 'bvu', 'Eucgr.A01281' => 'egr', 'Eucgr.B02326' => 'egr', 'Eucgr.H03532' => 'egr', 'Eucgr.K00553' => 'egr', 'Eucgr.K03116' => 'egr', 'FAN02G3963' => 'fan', 'FAN05G0438' => 'fan', 'FAN09G2434' => 'fan', 'FAN12G3984' => 'fan', 'FAN14G0798' => 'fan', 'FAN17G0652' => 'fan', 'FAN19G1988' => 'fan', 'FAN22G0632' => 'fan', 'FAN23G0387' => 'fan', 'FAN26G1323' => 'fan', 'FAN28G0666' => 'fan', 'FvH4_1g26080' => 'fve', 'FvH4_3g36780' => 'fve', 'FvH4_4g15270' => 'fve', 'FvH4_6g13490' => 'fve', 'Glyma.01G098700' => 'gma', 'Glyma.03G065900' => 'gma', 'Glyma.03G073754' => 'gma', 'Glyma.03G073758' => 'gma', 'Glyma.03G083200' => 'gma', 'Glyma.03G225500' => 'gma', 'Glyma.05G037766' => 'gma', 'Glyma.07G133500' => 'gma', 'Glyma.10G139400' => 'gma', 'Glyma.10G248900' => 'gma', 'Glyma.11G137800' => 'gma', 'Glyma.12G061300' => 'gma', 'Glyma.13G337900' => 'gma', 'Glyma.15G036600' => 'gma', 'Glyma.18G182800' => 'gma', 'Glyma.19G222500' => 'gma', 'Glyma.20G144800' => 'gma', 'Gohir.A01G222000' => 'ghi', 'Gohir.A03G044000' => 'ghi', 'Gohir.A03G044100' => 'ghi', 'Gohir.A04G083100' => 'ghi', 'Gohir.A07G127200' => 'ghi', 'Gohir.A07G132400' => 'ghi', 'Gohir.A08G000700' => 'ghi', 'Gohir.A11G327300' => 'ghi', 'Gohir.D01G211500' => 'ghi', 'Gohir.D03G123400' => 'ghi', 'Gohir.D03G123500' => 'ghi', 'Gohir.D04G121800' => 'ghi', 'Gohir.D07G131500' => 'ghi', 'Gohir.D07G136600' => 'ghi', 'Gohir.D08G011600' => 'ghi', 'Gohir.D11G346200' => 'ghi', 'Gorai.001G142800' => 'gra', 'Gorai.001G148700' => 'gra', 'Gorai.002G257300' => 'gra', 'Gorai.003G130000' => 'gra', 'Gorai.003G130100' => 'gra', 'Gorai.004G005300' => 'gra', 'Gorai.007G376500' => 'gra', 'Gorai.012G104700' => 'gra', 'GSVIVG01017946001' => 'vvi', 'GSVIVG01024928001' => 'vvi', 'GSVIVG01028227001' => 'vvi', 'GSVIVG01034151001' => 'vvi', 'HanXRQChr05g0135031' => 'han', 'HanXRQChr05g0135041' => 'han', 'HanXRQChr05g0140021' => 'han', 'HanXRQChr06g0178981' => 'han', 'HanXRQChr07g0188251' => 'han', 'HanXRQChr08g0235311' => 'han', 'HanXRQChr09g0271011' => 'han', 'HanXRQChr10g0293321' => 'han', 'HanXRQChr13g0388171' => 'han', 'Haze_00916' => 'cav', 'Haze_05063' => 'cav', 'Haze_20814' => 'cav', 'Haze_24128' => 'cav', 'Hma1.2p1_0745F.1_g212010' => 'hma', 'Hma1.2p1_0757F.1_g213260' => 'hma', 'Hma1.2p1_0936F.1_g238840' => 'hma', 'Hma1.2p1_1735F.1_g299890' => 'hma', 'Hma1.2p1_1861F.1_g305685' => 'hma', 'HPP92_003397' => 'vpl', 'HPP92_012597' => 'vpl', 'HPP92_015520' => 'vpl', 'HPP92_015539' => 'vpl', 'HPP92_020373' => 'vpl', 'Hund04938' => 'sun', 'Hund10677' => 'sun', 'Hund11033' => 'sun', 'Hund12155' => 'sun', 'Lalb_Chr01g0022551' => 'lal', 'Lalb_Chr03g0042341' => 'lal', 'Lalb_Chr07g0192931' => 'lal', 'Lalb_Chr12g0209551' => 'lal', 'Lalb_Chr19g0125251' => 'lal', 'Lalb_Chr19g0137891' => 'lal', 'Lalb_Chr21g0304641' => 'lal', 'Lalb_Chr21g0309881' => 'lal', 'Lj1A5T12' => 'lonja', 'Lj1C148G10' => 'lonja', 'Lj2A93T83' => 'lonja', 'Lj3A738G68' => 'lonja', 'Lj3C966T1' => 'lonja', 'Lj3g0018958' => 'lja', 'Lj3g0021831' => 'lja', 'Lj3g0025443' => 'lja', 'Lj4g0026809' => 'lja', 'Lj5g0012558' => 'lja', 'Lj5g0021586' => 'lja', 'Lsat_1_v5_gn_5_156840' => 'lsa', 'Lsat_1_v5_gn_8_73460' => 'lsa', 'Lsat_1_v5_gn_8_73481' => 'lsa', 'Lsat_1_v5_gn_9_31601' => 'lsa', 'Lsat_1_v5_gn_9_77320' => 'lsa', 'Manes.01G171300' => 'mes', 'Manes.01G171400' => 'mes', 'Manes.01G236100' => 'mes', 'Manes.02G130500' => 'mes', 'Manes.02G130600' => 'mes', 'Manes.03G180200' => 'mes', 'Manes.05G007000' => 'mes', 'Manes.08G084400' => 'mes', 'Manes.09G092600' => 'mes', 'Manes.15G027900' => 'mes', 'MBI04_g40948_MAGBIO' => 'mbi', 'MBI14_g12123_MAGBIO' => 'mbi', 'MBI18_g28915_MAGBIO' => 'mbi', 'MCO09G053' => 'mco', 'MCO11G782' => 'mco', 'MCO15G215' => 'mco', 'MD03G1088500' => 'mdo', 'MD03G1088600' => 'mdo', 'MD04G1130800' => 'mdo', 'MD09G1291700' => 'mdo', 'MD11G1097500' => 'mdo', 'MD11G1097600' => 'mdo', 'MD12G1143900' => 'mdo', 'MD13G1191400' => 'mdo', 'MD16G1191500' => 'mdo', 'Medtr1g085570' => 'mtr', 'Medtr1g104610' => 'mtr', 'Medtr2g097520' => 'mtr', 'Medtr4g021800' => 'mtr', 'Medtr4g021825' => 'mtr', 'Medtr4g064270' => 'mtr', 'Medtr4g064380' => 'mtr', 'Medtr7g062150' => 'mtr', 'MELO3C003138.2' => 'cme', 'MELO3C005187.2' => 'cme', 'MELO3C009252.2' => 'cme', 'MELO3C014481.2' => 'cme', 'MELO3C020616.2' => 'cme', 'MELO3C020617.2' => 'cme', 'MELO3C020618.2' => 'cme', 'Migut.G00328' => 'egut', 'Migut.J00320' => 'egut', 'Migut.L01000' => 'egut', 'Migut.L01953' => 'egut', 'MSTRG.10253' => 'ama', 'MSTRG.19077' => 'ama', 'MSTRG.26780' => 'ama', 'MSTRG.4023' => 'ama', 'MSTRG.5655' => 'ama', 'MSTRG.9992' => 'ama', 'Nitab4.5_0000043g0310' => 'nta', 'Nitab4.5_0000463g0080' => 'nta', 'Nitab4.5_0000705g0170' => 'nta', 'Nitab4.5_0001326g0060' => 'nta', 'Nitab4.5_0001628g0030' => 'nta', 'Nitab4.5_0002103g0110' => 'nta', 'Nitab4.5_0002946g0030' => 'nta', 'Nitab4.5_0004639g0030' => 'nta', 'Nn2g11149' => 'nnu', 'Nn2g13389' => 'nnu', 'Nn4g25326' => 'nnu', 'Nn4g26290' => 'nnu', 'Nn5g29865' => 'nnu', 'Oeu004163.1' => 'oeu', 'Oeu006901.1' => 'oeu', 'Oeu010096.1' => 'oeu', 'Oeu024340.1' => 'oeu', 'Oeu048369.1' => 'oeu', 'Os01g0973000' => 'osa', 'Os03g0273800' => 'osa', 'Os03g0701200' => 'osa', 'Os03g0834050' => 'osa', 'Os07g0634400' => 'osa', 'Peaxi162Scf00092g01414' => 'pax', 'Peaxi162Scf00165g00818' => 'pax', 'Peaxi162Scf00309g00516' => 'pax', 'Peaxi162Scf00774g00218' => 'pax', 'PGR004G1824' => 'pgr', 'PGR004G2606' => 'pgr', 'PGR031G2716' => 'pgr', 'PGR102G2460' => 'pgr', 'PGR142G2599' => 'pgr', 'PGSC0003DMG400000843' => 'stu', 'PGSC0003DMG400008829' => 'stu', 'PGSC0003DMG400030418' => 'stu', 'PGSC0003DMG400031834' => 'stu', 'PGSC0003DMG401028300' => 'stu', 'PGSC0003DMG402028300' => 'stu', 'Phvul.001G219300' => 'pvu', 'Phvul.007G056000' => 'pvu', 'Phvul.007G208000' => 'pvu', 'Phvul.008G119500' => 'pvu', 'Phvul.010G011200' => 'pvu', 'Phvul.010G014800' => 'pvu', 'Phvul.011G062900' => 'pvu', 'Phvul.L007043' => 'pvu', 'Potri.001G242300' => 'ptr', 'Potri.002G185300' => 'ptr', 'Potri.006G086900' => 'ptr', 'Potri.008G151700' => 'ptr', 'Potri.009G033500' => 'ptr', 'Potri.010G089300' => 'ptr', 'Potri.014G110800' => 'ptr', 'Pp3c27_8130' => 'ppa', 'Pp3c6_27410' => 'ppa', 'PRCOL_00001659' => 'pco', 'PRCOL_00001927' => 'pco', 'PRCOL_00003649' => 'pco', 'Prupe.1G011600' => 'ppe', 'Prupe.3G000800' => 'ppe', 'Prupe.3G001100' => 'ppe', 'Prupe.6G072700' => 'ppe', 'Prupe.6G072800' => 'ppe', 'Prupe.6G257300' => 'ppe', 'Prupe.8G033000' => 'ppe', 'Psat0s2633g0080' => 'psa', 'Psat0s3396g0080' => 'psa', 'Psat0s3396g0200' => 'psa', 'Psat3g139080' => 'psa', 'Psat5g285080' => 'psa', 'Psat6g157760' => 'psa', 'Psat6g208440' => 'psa', 'Psat7g215320' => 'psa', 'Psat7g215400' => 'psa', 'Psat7g235600' => 'psa', 'Psat7g235760' => 'psa', 'PSO063G4603' => 'pso', 'PSO210G0182' => 'pso', 'PSO210G0196' => 'pso', 'PSO339G0394' => 'pso', 'PSO339G4127' => 'pso', 'PSO513G0064' => 'pso', 'PSO761G0079' => 'pso', 'QL01p031003' => 'qlo', 'QL01p031078' => 'qlo', 'QL06p003004' => 'qlo', 'QL07p048731' => 'qlo', 'QL09p037427' => 'qlo', 'RcHm_v2.0_Chr3g0466361' => 'rch', 'RcHm_v2.0_Chr3g0485571' => 'rch', 'RcHm_v2.0_Chr4g0416551' => 'rch', 'RcHm_v2.0_Chr5g0065831' => 'rch', 'Rhsim01G0230500' => 'rsi', 'Rhsim05G0194000' => 'rsi', 'Rhsim08G0250400' => 'rsi', 'Sabra02G0131000' => 'sbr', 'Sabra06G0066300' => 'sbr', 'Sabra08G0115500' => 'sbr', 'Sabra09G0023900' => 'sbr', 'Sabra10G0054000' => 'sbr', 'Sabra14G0081500' => 'sbr', 'Sabra16G0147100' => 'sbr', 'SalBow2G2957' => 'sbo', 'SalBow4G3320' => 'sbo', 'SalBow8G1894' => 'sbo', 'Sc07g0007950' => 'sci', 'Sc12g0001360' => 'sci', 'Sc13g0004330' => 'sci', 'Sc20g0005010' => 'sci', 'Sed0000361' => 'sed', 'Sed0001706' => 'sed', 'Sed0002422' => 'sed', 'Sed0004029' => 'sed', 'Sed0004602' => 'sed', 'Sed0004943' => 'sed', 'Sed0008646' => 'sed', 'Sed0023313' => 'sed', 'Sed0024843' => 'sed', 'SEGI_00081' => 'sgi', 'SEGI_00947' => 'sgi', 'SEGI_04046' => 'sgi', 'SEGI_06880' => 'sgi', 'SEGI_09736' => 'sgi', 'SEGI_12741' => 'sgi', 'SEGI_14530' => 'sgi', 'SEGI_20705' => 'sgi', 'SEGI_26088' => 'sgi', 'SEGI_28323' => 'sgi', 'SEGI_33343' => 'sgi', 'SGA_v2.0_scaffold126G33775' => 'sas', 'SGA_v2.0_scaffold2G01337' => 'sas', 'SGA_v2.0_scaffold38G15006' => 'sas', 'SGA_v2.0_scaffold39G15264' => 'sas', 'SGA_v2.0_scaffold453G51880' => 'sas', 'SHI12696' => 'shi', 'SMO367G1096' => 'smo', 'Solyc01g068630.3' => 'sly', 'Solyc05g011880.3' => 'sly', 'Solyc06g076300.3' => 'sly', 'Solyc09g010940.4' => 'sly', 'Solyc09g075890.3' => 'sly', 'Sopen01g030560' => 'spe', 'Sopen05g006630' => 'spe', 'Sopen06g032720' => 'spe', 'Sopen09g005660' => 'spe', 'Sopen09g030690' => 'spe', 'Sp4g14540' => 'spa', 'Sp4g20030' => 'spa', 'Sp5g01320' => 'spa', 'Sp6g21170' => 'spa', 'Sp6g21180' => 'spa', 'Sp6g21190' => 'spa', 'Sp6g40220' => 'spa', 'TAR362G0122' => 'tar', 'TAR362G1338' => 'tar', 'TAR369G0590' => 'tar', 'TAR371G0824' => 'tar', 'TAR622G1429' => 'tar', 'TAR623G0734' => 'tar', 'TAR625G0441' => 'tar', 'TAR629G0976' => 'tar', 'TAR633G1195' => 'tar', 'TAR636G2660' => 'tar', 'THA.LOC104799440' => 'tha', 'THA.LOC104800966' => 'tha', 'THA.LOC104806559' => 'tha', 'THA.LOC104810765' => 'tha', 'THA.LOC104816266' => 'tha', 'THA.LOC104817419' => 'tha', 'THA.LOC104827021' => 'tha', 'Thecc.01G327400' => 'tca', 'Thecc.04G229200' => 'tca', 'Thecc.05G037400' => 'tca', 'Thecc.09G318600' => 'tca', 'Thecc.09G318700' => 'tca', 'Thhalv10006238m.g' => 'esa', 'Thhalv10014321m.g' => 'esa', 'Thhalv10014335m.g' => 'esa', 'Thhalv10015826m.g' => 'esa', 'Thhalv10017107m.g' => 'esa', 'Thhalv10017180m.g' => 'esa', 'Thhalv10029339m.g' => 'esa', 'TPR.G1699' => 'tpr', 'TPR.G23609' => 'tpr', 'TPR.G3081' => 'tpr', 'TPR.G40397' => 'tpr', 'TPR.G5522' => 'tpr', 'TPR.G5618' => 'tpr', 'TPR.G5626' => 'tpr', 'TWI09G1632' => 'twi', 'TWI23G1230' => 'twi', 'TWI53G1064' => 'twi', 'TWI59G0751' => 'twi', 'TWI74G0947' => 'twi', 'TWI77G0337' => 'twi', 'TWI79G1254' => 'twi', 'unitig_0.g2341' => 'ugi', 'unitig_26.g10006' => 'ugi', 'unitig_26.g10008' => 'ugi', 'unitig_26.g9192' => 'ugi', 'vmacro14547' => 'vma', 'vmacro15333' => 'vma', 'vmacro18743' => 'vma', 'vmacro20166' => 'vma', 'VMungo0331G0523' => 'vmu', 'VMungo0331G1202' => 'vmu', 'VMungo0720G1228' => 'vmu', 'VMungo0720G1514' => 'vmu', 'VMungo1080G0169' => 'vmu', 'VMungo1127G1475' => 'vmu', 'VMungo1383G1208' => 'vmu', 'VMungo1383G1698' => 'vmu', 'Zm00001eb012270' => 'zma', 'Zm00001eb054100' => 'zma', 'Zm00001eb063350' => 'zma', 'Zm00001eb328560' => 'zma', 'Zm00001eb342820' => 'zma', 'Zm00001eb362210' => 'zma', 'Zm00001eb397730' => 'zma', 'Zm00001eb399750' => 'zma' ) $gf_id = 'HOM05D000959' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000959' ) $data_identifier = 'HOM05D000959' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 5, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 5, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 10, 'mbi' => (int) 3, 'mco' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 2, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 3, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 11, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399750' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000959', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '622', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p07100' => 'bna', 'A03p11720' => 'bna', 'A05p08300' => 'bna', 'A05p13380' => 'bna', 'A09p54130' => 'bna', 'A10p16690' => 'bna', 'A10p16700' => 'bna', 'A10p33390' => 'bna', 'Aa31LG10G16020' => 'aar', 'Aa31LG1G11810' => 'aar', 'Aa31LG1G11830' => 'aar', 'Aa31LG1G22510' => 'aar', 'Aa31LG5G4890' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5793' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2310' => 'aag', 'Actinidia08499' => 'ach', 'Actinidia11262' => 'ach', 'Actinidia23926' => 'ach', 'Actinidia34420' => 'ach', 'Actinidia36970' => 'ach', 'Ah.02g111220' => 'amhyb', 'Ah.15g097750' => 'amhyb', 'AL4G27500' => 'aly', 'AL6G11470' => 'aly', 'AL8G35950' => 'aly', 'AL8G35960' => 'aly', 'AL8G35970' => 'aly', 'Aqoxy1G00912' => 'aox', 'Aqoxy2G02253' => 'aox', 'Aqoxy2G02411' => 'aox', 'Aqoxy5G00485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BZ66YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K8ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM4FUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6BF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HFV7XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25JBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0YNNV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MAKK6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P70IT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP2Z6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V61LZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YWP64R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3S9AI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7PGHH' => 'arhy', 'AT2G32150' => 'ath', 'AT3G62040' => 'ath', 'AT5G02230' => 'ath', 'AT5G59480' => 'ath', 'AT5G59490' => 'ath', 'ATR0332G060' => 'atr', 'ATR0559G190' => 'atr', 'ATR0693G294' => 'atr', 'Atru.chr3.3975' => 'acertr', 'Atru.chr3.3976' => 'acertr', 'Atru.chr3.3977' => 'acertr', 'Atru.chr4.2498' => 'acertr', 'Atru.chr5.838' => 'acertr', 'Atru.chr8.1990' => 'acertr', 'Atru.chr8.1991' => 'acertr', 'Atru.chr8.1992' => 'acertr', 'AUR62001759' => 'cqu', 'AUR62009545' => 'cqu', 'AUR62010474' => 'cqu', 'AUR62025820' => 'cqu', 'AUR62030422' => 'cqu', 'AUR62033605' => 'cqu', 'AUR62038615' => 'cqu', 'AUR62041347' => 'cqu', 'BcaB01g04574' => 'bca', 'BcaB02g09263' => 'bca', 'BcaB02g10453' => 'bca', 'BcaB05g22513' => 'bca', 'BcaB08g36253' => 'bca', 'BcaB08g36254' => 'bca', 'BcaC01g06519' => 'bca', 'BcaC02g11889' => 'bca', 'BcaC03g14010' => 'bca', 'BcaC03g18439' => 'bca', 'BcaC04g19765' => 'bca', 'BcaC09g48432' => 'bca', 'BcaNung07302' => 'bca', 'BolC2t06040H' => 'bol', 'BolC2t07346H' => 'bol', 'BolC3t13817H' => 'bol', 'BolC4t22625H' => 'bol', 'BolC4t23297H' => 'bol', 'BolC8t51278H' => 'bol', 'BolC9t58050H' => 'bol', 'BolC9t58051H' => 'bol', 'BolC9t60163H' => 'bol', 'BraA02t04712Z' => 'bra', 'BraA02t05791Z' => 'bra', 'BraA03t10483Z' => 'bra', 'BraA05t19795Z' => 'bra', 'BraA05t20276Z' => 'bra', 'BraA09t40827Z' => 'bra', 'BraA10t43750Z' => 'bra', 'BraA10t43751Z' => 'bra', 'BraA10t45370Z' => 'bra', 'C02p00400' => 'bna', 'C02p12460' => 'bna', 'C03p13680' => 'bna', 'C04p10270' => 'bna', 'C04p17500' => 'bna', 'C08p37010' => 'bna', 'C09p51880' => 'bna', 'C09p51890' => 'bna', 'C09p74300' => 'bna', 'CAN.G179.26' => 'can', 'CAN.G3384.1' => 'can', 'CAN.G394.68' => 'can', 'CAN.G907.13' => 'can', 'CANSAT11G0012' => 'cansat', 'CANSAT25G1586' => 'cansat', 'CANSAT35G0735' => 'cansat', 'CANSAT54G0556' => 'cansat', 'CANSAT64G0356' => 'cansat', 'CANSAT78G2042' => 'cansat', 'CARHR125920' => 'chi', 'CARHR131910' => 'chi', 'CARHR172390' => 'chi', 'CARHR211140' => 'chi', 'CARHR285850' => 'chi', 'CARHR285860' => 'chi', 'Carub.0004s1347' => 'cru', 'Carub.0004s1960' => 'cru', 'Carub.0005s2880' => 'cru', 'Carub.0006s0107' => 'cru', 'Carub.0008s2015' => 'cru', 'Carub.0008s2016' => 'cru', 'Carub.0008s2017' => 'cru', 'Ca_01315_v3' => 'car', 'Ca_05063_v3' => 'car', 'Ca_10231_v3' => 'car', 'Ca_10913_v3' => 'car', 'Ca_19156_v3' => 'car', 'Ca_23644_v3' => 'car', 'Ca_26735_v3' => 'car', 'Cc01_g13130' => 'ccan', 'Cc02_g21690' => 'ccan', 'Cc03_g03600' => 'ccan', 'Cc06_g02510' => 'ccan', 'CDE02G1265' => 'cde', 'CDE05G0415' => 'cde', 'CDE08G1082' => 'cde', 'Cfa005780' => 'cfa', 'Cfa011522' => 'cfa', 'Cfa011523' => 'cfa', 'Cfa015627' => 'cfa', 'Cfa017359' => 'cfa', 'Ciclev10005687m.g' => 'ccl', 'Ciclev10012173m.g' => 'ccl', 'Ciclev10021621m.g' => 'ccl', 'Ciclev10028968m.g' => 'ccl', 'Ciclev10029907m.g' => 'ccl', 'CiPaw.01G164800' => 'cil', 'CiPaw.07G083700' => 'cil', 'CiPaw.07G127000' => 'cil', 'CiPaw.07G136900' => 'cil', 'CiPaw.08G081700' => 'cil', 'CiPaw.09G194600' => 'cil', 'CiPaw.10G146500' => 'cil', 'CiPaw.13G091500' => 'cil', 'CiPaw.13G091600' => 'cil', 'ClCG00G003390' => 'cla', 'ClCG01G007220' => 'cla', 'ClCG03G001370' => 'cla', 'ClCG04G008100' => 'cla', 'ClCG06G006110' => 'cla', 'ClCG06G006130' => 'cla', 'ClCG10G021210' => 'cla', 'COL.COLO4_07648' => 'col', 'COL.COLO4_07650' => 'col', 'COL.COLO4_07651' => 'col', 'COL.COLO4_14780' => 'col', 'COL.COLO4_18546' => 'col', 'COL.COLO4_18547' => 'col', 'COL.COLO4_23103' => 'col', 'COL.COLO4_30419' => 'col', 'COL.COLO4_34232' => 'col', 'Cpa.g.sc169.20' => 'cpa', 'Cpa.g.sc57.45' => 'cpa', 'Cpa.g.sc58.124' => 'cpa', 'Cpa.g.sc58.125' => 'cpa', 'Cpa.g.sc81.118' => 'cpa', 'Cpa.g.sc81.119' => 'cpa', 'Cre12.g524700' => 'cre', 'CsaV3_1G034430' => 'csa', 'CsaV3_1G034440' => 'csa', 'CsaV3_1G034450' => 'csa', 'CsaV3_3G034830' => 'csa', 'CsaV3_4G025090' => 'csa', 'CsaV3_5G018660' => 'csa', 'CsaV3_6G038160' => 'csa', 'CSS0003447' => 'camsi', 'CSS0017840' => 'camsi', 'CSS0019260' => 'camsi', 'CSS0040375' => 'camsi', 'CSS0042533' => 'camsi', 'DCAR_005960' => 'dca', 'DCAR_012104' => 'dca', 'DCAR_012105' => 'dca', 'DCAR_012293' => 'dca', 'DCAR_015632' => 'dca', 'DCAR_024602' => 'dca', 'DCAR_028752' => 'dca', 'Dinv06261' => 'din', 'Dinv13982' => 'din', 'Dinv17029' => 'din', 'Dinv18463' => 'din', 'Dinv33181' => 'din', 'Dinv35585' => 'din', 'Dinv37161' => 'din', 'Dinv42977' => 'din', 'Dinv43122' => 'din', 'Dinv44517' => 'din', 'Duzib093G0256' => 'dzi', 'Duzib106G1254' => 'dzi', 'Duzib128G1789' => 'dzi', 'Duzib133G0633' => 'dzi', 'Duzib138G0510' => 'dzi', 'Duzib150G1084' => 'dzi', 'Duzib168G0488' => 'dzi', 'Duzib168G1523' => 'dzi', 'Duzib170G0133' => 'dzi', 'ECA234G1433' => 'eca', 'ECA236G1432' => 'eca', 'ECA236G2256' => 'eca', 'ECA236G2365' => 'eca', 'ECA236G4830' => 'eca', 'ECA248G1505' => 'eca', 'EL10Ac3g06431' => 'bvu', 'EL10Ac5g12577' => 'bvu', 'EL10Ac6g13533' => 'bvu', 'EL10Ac7g16045' => 'bvu', 'Eucgr.A01281' => 'egr', 'Eucgr.B02326' => 'egr', 'Eucgr.H03532' => 'egr', 'Eucgr.K00553' => 'egr', 'Eucgr.K03116' => 'egr', 'FAN02G3963' => 'fan', 'FAN05G0438' => 'fan', 'FAN09G2434' => 'fan', 'FAN12G3984' => 'fan', 'FAN14G0798' => 'fan', 'FAN17G0652' => 'fan', 'FAN19G1988' => 'fan', 'FAN22G0632' => 'fan', 'FAN23G0387' => 'fan', 'FAN26G1323' => 'fan', 'FAN28G0666' => 'fan', 'FvH4_1g26080' => 'fve', 'FvH4_3g36780' => 'fve', 'FvH4_4g15270' => 'fve', 'FvH4_6g13490' => 'fve', 'Glyma.01G098700' => 'gma', 'Glyma.03G065900' => 'gma', 'Glyma.03G073754' => 'gma', 'Glyma.03G073758' => 'gma', 'Glyma.03G083200' => 'gma', 'Glyma.03G225500' => 'gma', 'Glyma.05G037766' => 'gma', 'Glyma.07G133500' => 'gma', 'Glyma.10G139400' => 'gma', 'Glyma.10G248900' => 'gma', 'Glyma.11G137800' => 'gma', 'Glyma.12G061300' => 'gma', 'Glyma.13G337900' => 'gma', 'Glyma.15G036600' => 'gma', 'Glyma.18G182800' => 'gma', 'Glyma.19G222500' => 'gma', 'Glyma.20G144800' => 'gma', 'Gohir.A01G222000' => 'ghi', 'Gohir.A03G044000' => 'ghi', 'Gohir.A03G044100' => 'ghi', 'Gohir.A04G083100' => 'ghi', 'Gohir.A07G127200' => 'ghi', 'Gohir.A07G132400' => 'ghi', 'Gohir.A08G000700' => 'ghi', 'Gohir.A11G327300' => 'ghi', 'Gohir.D01G211500' => 'ghi', 'Gohir.D03G123400' => 'ghi', 'Gohir.D03G123500' => 'ghi', 'Gohir.D04G121800' => 'ghi', 'Gohir.D07G131500' => 'ghi', 'Gohir.D07G136600' => 'ghi', 'Gohir.D08G011600' => 'ghi', 'Gohir.D11G346200' => 'ghi', 'Gorai.001G142800' => 'gra', 'Gorai.001G148700' => 'gra', 'Gorai.002G257300' => 'gra', 'Gorai.003G130000' => 'gra', 'Gorai.003G130100' => 'gra', 'Gorai.004G005300' => 'gra', 'Gorai.007G376500' => 'gra', 'Gorai.012G104700' => 'gra', 'GSVIVG01017946001' => 'vvi', 'GSVIVG01024928001' => 'vvi', 'GSVIVG01028227001' => 'vvi', 'GSVIVG01034151001' => 'vvi', 'HanXRQChr05g0135031' => 'han', 'HanXRQChr05g0135041' => 'han', 'HanXRQChr05g0140021' => 'han', 'HanXRQChr06g0178981' => 'han', 'HanXRQChr07g0188251' => 'han', 'HanXRQChr08g0235311' => 'han', 'HanXRQChr09g0271011' => 'han', 'HanXRQChr10g0293321' => 'han', 'HanXRQChr13g0388171' => 'han', 'Haze_00916' => 'cav', 'Haze_05063' => 'cav', 'Haze_20814' => 'cav', 'Haze_24128' => 'cav', 'Hma1.2p1_0745F.1_g212010' => 'hma', 'Hma1.2p1_0757F.1_g213260' => 'hma', 'Hma1.2p1_0936F.1_g238840' => 'hma', 'Hma1.2p1_1735F.1_g299890' => 'hma', 'Hma1.2p1_1861F.1_g305685' => 'hma', 'HPP92_003397' => 'vpl', 'HPP92_012597' => 'vpl', 'HPP92_015520' => 'vpl', 'HPP92_015539' => 'vpl', 'HPP92_020373' => 'vpl', 'Hund04938' => 'sun', 'Hund10677' => 'sun', 'Hund11033' => 'sun', 'Hund12155' => 'sun', 'Lalb_Chr01g0022551' => 'lal', 'Lalb_Chr03g0042341' => 'lal', 'Lalb_Chr07g0192931' => 'lal', 'Lalb_Chr12g0209551' => 'lal', 'Lalb_Chr19g0125251' => 'lal', 'Lalb_Chr19g0137891' => 'lal', 'Lalb_Chr21g0304641' => 'lal', 'Lalb_Chr21g0309881' => 'lal', 'Lj1A5T12' => 'lonja', 'Lj1C148G10' => 'lonja', 'Lj2A93T83' => 'lonja', 'Lj3A738G68' => 'lonja', 'Lj3C966T1' => 'lonja', 'Lj3g0018958' => 'lja', 'Lj3g0021831' => 'lja', 'Lj3g0025443' => 'lja', 'Lj4g0026809' => 'lja', 'Lj5g0012558' => 'lja', 'Lj5g0021586' => 'lja', 'Lsat_1_v5_gn_5_156840' => 'lsa', 'Lsat_1_v5_gn_8_73460' => 'lsa', 'Lsat_1_v5_gn_8_73481' => 'lsa', 'Lsat_1_v5_gn_9_31601' => 'lsa', 'Lsat_1_v5_gn_9_77320' => 'lsa', 'Manes.01G171300' => 'mes', 'Manes.01G171400' => 'mes', 'Manes.01G236100' => 'mes', 'Manes.02G130500' => 'mes', 'Manes.02G130600' => 'mes', 'Manes.03G180200' => 'mes', 'Manes.05G007000' => 'mes', 'Manes.08G084400' => 'mes', 'Manes.09G092600' => 'mes', 'Manes.15G027900' => 'mes', 'MBI04_g40948_MAGBIO' => 'mbi', 'MBI14_g12123_MAGBIO' => 'mbi', 'MBI18_g28915_MAGBIO' => 'mbi', 'MCO09G053' => 'mco', 'MCO11G782' => 'mco', 'MCO15G215' => 'mco', 'MD03G1088500' => 'mdo', 'MD03G1088600' => 'mdo', 'MD04G1130800' => 'mdo', 'MD09G1291700' => 'mdo', 'MD11G1097500' => 'mdo', 'MD11G1097600' => 'mdo', 'MD12G1143900' => 'mdo', 'MD13G1191400' => 'mdo', 'MD16G1191500' => 'mdo', 'Medtr1g085570' => 'mtr', 'Medtr1g104610' => 'mtr', 'Medtr2g097520' => 'mtr', 'Medtr4g021800' => 'mtr', 'Medtr4g021825' => 'mtr', 'Medtr4g064270' => 'mtr', 'Medtr4g064380' => 'mtr', 'Medtr7g062150' => 'mtr', 'MELO3C003138.2' => 'cme', 'MELO3C005187.2' => 'cme', 'MELO3C009252.2' => 'cme', 'MELO3C014481.2' => 'cme', 'MELO3C020616.2' => 'cme', 'MELO3C020617.2' => 'cme', 'MELO3C020618.2' => 'cme', 'Migut.G00328' => 'egut', 'Migut.J00320' => 'egut', 'Migut.L01000' => 'egut', 'Migut.L01953' => 'egut', 'MSTRG.10253' => 'ama', 'MSTRG.19077' => 'ama', 'MSTRG.26780' => 'ama', 'MSTRG.4023' => 'ama', 'MSTRG.5655' => 'ama', 'MSTRG.9992' => 'ama', 'Nitab4.5_0000043g0310' => 'nta', 'Nitab4.5_0000463g0080' => 'nta', 'Nitab4.5_0000705g0170' => 'nta', 'Nitab4.5_0001326g0060' => 'nta', 'Nitab4.5_0001628g0030' => 'nta', 'Nitab4.5_0002103g0110' => 'nta', 'Nitab4.5_0002946g0030' => 'nta', 'Nitab4.5_0004639g0030' => 'nta', 'Nn2g11149' => 'nnu', 'Nn2g13389' => 'nnu', 'Nn4g25326' => 'nnu', 'Nn4g26290' => 'nnu', 'Nn5g29865' => 'nnu', 'Oeu004163.1' => 'oeu', 'Oeu006901.1' => 'oeu', 'Oeu010096.1' => 'oeu', 'Oeu024340.1' => 'oeu', 'Oeu048369.1' => 'oeu', 'Os01g0973000' => 'osa', 'Os03g0273800' => 'osa', 'Os03g0701200' => 'osa', 'Os03g0834050' => 'osa', 'Os07g0634400' => 'osa', 'Peaxi162Scf00092g01414' => 'pax', 'Peaxi162Scf00165g00818' => 'pax', 'Peaxi162Scf00309g00516' => 'pax', 'Peaxi162Scf00774g00218' => 'pax', 'PGR004G1824' => 'pgr', 'PGR004G2606' => 'pgr', 'PGR031G2716' => 'pgr', 'PGR102G2460' => 'pgr', 'PGR142G2599' => 'pgr', 'PGSC0003DMG400000843' => 'stu', 'PGSC0003DMG400008829' => 'stu', 'PGSC0003DMG400030418' => 'stu', 'PGSC0003DMG400031834' => 'stu', 'PGSC0003DMG401028300' => 'stu', 'PGSC0003DMG402028300' => 'stu', 'Phvul.001G219300' => 'pvu', 'Phvul.007G056000' => 'pvu', 'Phvul.007G208000' => 'pvu', 'Phvul.008G119500' => 'pvu', 'Phvul.010G011200' => 'pvu', 'Phvul.010G014800' => 'pvu', 'Phvul.011G062900' => 'pvu', 'Phvul.L007043' => 'pvu', 'Potri.001G242300' => 'ptr', 'Potri.002G185300' => 'ptr', 'Potri.006G086900' => 'ptr', 'Potri.008G151700' => 'ptr', 'Potri.009G033500' => 'ptr', 'Potri.010G089300' => 'ptr', 'Potri.014G110800' => 'ptr', 'Pp3c27_8130' => 'ppa', 'Pp3c6_27410' => 'ppa', 'PRCOL_00001659' => 'pco', 'PRCOL_00001927' => 'pco', 'PRCOL_00003649' => 'pco', 'Prupe.1G011600' => 'ppe', 'Prupe.3G000800' => 'ppe', 'Prupe.3G001100' => 'ppe', 'Prupe.6G072700' => 'ppe', 'Prupe.6G072800' => 'ppe', 'Prupe.6G257300' => 'ppe', 'Prupe.8G033000' => 'ppe', 'Psat0s2633g0080' => 'psa', 'Psat0s3396g0080' => 'psa', 'Psat0s3396g0200' => 'psa', 'Psat3g139080' => 'psa', 'Psat5g285080' => 'psa', 'Psat6g157760' => 'psa', 'Psat6g208440' => 'psa', 'Psat7g215320' => 'psa', 'Psat7g215400' => 'psa', 'Psat7g235600' => 'psa', 'Psat7g235760' => 'psa', 'PSO063G4603' => 'pso', 'PSO210G0182' => 'pso', 'PSO210G0196' => 'pso', 'PSO339G0394' => 'pso', 'PSO339G4127' => 'pso', 'PSO513G0064' => 'pso', 'PSO761G0079' => 'pso', 'QL01p031003' => 'qlo', 'QL01p031078' => 'qlo', 'QL06p003004' => 'qlo', 'QL07p048731' => 'qlo', 'QL09p037427' => 'qlo', 'RcHm_v2.0_Chr3g0466361' => 'rch', 'RcHm_v2.0_Chr3g0485571' => 'rch', 'RcHm_v2.0_Chr4g0416551' => 'rch', 'RcHm_v2.0_Chr5g0065831' => 'rch', 'Rhsim01G0230500' => 'rsi', 'Rhsim05G0194000' => 'rsi', 'Rhsim08G0250400' => 'rsi', 'Sabra02G0131000' => 'sbr', 'Sabra06G0066300' => 'sbr', 'Sabra08G0115500' => 'sbr', 'Sabra09G0023900' => 'sbr', 'Sabra10G0054000' => 'sbr', 'Sabra14G0081500' => 'sbr', 'Sabra16G0147100' => 'sbr', 'SalBow2G2957' => 'sbo', 'SalBow4G3320' => 'sbo', 'SalBow8G1894' => 'sbo', 'Sc07g0007950' => 'sci', 'Sc12g0001360' => 'sci', 'Sc13g0004330' => 'sci', 'Sc20g0005010' => 'sci', 'Sed0000361' => 'sed', 'Sed0001706' => 'sed', 'Sed0002422' => 'sed', 'Sed0004029' => 'sed', 'Sed0004602' => 'sed', 'Sed0004943' => 'sed', 'Sed0008646' => 'sed', 'Sed0023313' => 'sed', 'Sed0024843' => 'sed', 'SEGI_00081' => 'sgi', 'SEGI_00947' => 'sgi', 'SEGI_04046' => 'sgi', 'SEGI_06880' => 'sgi', 'SEGI_09736' => 'sgi', 'SEGI_12741' => 'sgi', 'SEGI_14530' => 'sgi', 'SEGI_20705' => 'sgi', 'SEGI_26088' => 'sgi', 'SEGI_28323' => 'sgi', 'SEGI_33343' => 'sgi', 'SGA_v2.0_scaffold126G33775' => 'sas', 'SGA_v2.0_scaffold2G01337' => 'sas', 'SGA_v2.0_scaffold38G15006' => 'sas', 'SGA_v2.0_scaffold39G15264' => 'sas', 'SGA_v2.0_scaffold453G51880' => 'sas', 'SHI12696' => 'shi', 'SMO367G1096' => 'smo', 'Solyc01g068630.3' => 'sly', 'Solyc05g011880.3' => 'sly', 'Solyc06g076300.3' => 'sly', 'Solyc09g010940.4' => 'sly', 'Solyc09g075890.3' => 'sly', 'Sopen01g030560' => 'spe', 'Sopen05g006630' => 'spe', 'Sopen06g032720' => 'spe', 'Sopen09g005660' => 'spe', 'Sopen09g030690' => 'spe', 'Sp4g14540' => 'spa', 'Sp4g20030' => 'spa', 'Sp5g01320' => 'spa', 'Sp6g21170' => 'spa', 'Sp6g21180' => 'spa', 'Sp6g21190' => 'spa', 'Sp6g40220' => 'spa', 'TAR362G0122' => 'tar', 'TAR362G1338' => 'tar', 'TAR369G0590' => 'tar', 'TAR371G0824' => 'tar', 'TAR622G1429' => 'tar', 'TAR623G0734' => 'tar', 'TAR625G0441' => 'tar', 'TAR629G0976' => 'tar', 'TAR633G1195' => 'tar', 'TAR636G2660' => 'tar', 'THA.LOC104799440' => 'tha', 'THA.LOC104800966' => 'tha', 'THA.LOC104806559' => 'tha', 'THA.LOC104810765' => 'tha', 'THA.LOC104816266' => 'tha', 'THA.LOC104817419' => 'tha', 'THA.LOC104827021' => 'tha', 'Thecc.01G327400' => 'tca', 'Thecc.04G229200' => 'tca', 'Thecc.05G037400' => 'tca', 'Thecc.09G318600' => 'tca', 'Thecc.09G318700' => 'tca', 'Thhalv10006238m.g' => 'esa', 'Thhalv10014321m.g' => 'esa', 'Thhalv10014335m.g' => 'esa', 'Thhalv10015826m.g' => 'esa', 'Thhalv10017107m.g' => 'esa', 'Thhalv10017180m.g' => 'esa', 'Thhalv10029339m.g' => 'esa', 'TPR.G1699' => 'tpr', 'TPR.G23609' => 'tpr', 'TPR.G3081' => 'tpr', 'TPR.G40397' => 'tpr', 'TPR.G5522' => 'tpr', 'TPR.G5618' => 'tpr', 'TPR.G5626' => 'tpr', 'TWI09G1632' => 'twi', 'TWI23G1230' => 'twi', 'TWI53G1064' => 'twi', 'TWI59G0751' => 'twi', 'TWI74G0947' => 'twi', 'TWI77G0337' => 'twi', 'TWI79G1254' => 'twi', 'unitig_0.g2341' => 'ugi', 'unitig_26.g10006' => 'ugi', 'unitig_26.g10008' => 'ugi', 'unitig_26.g9192' => 'ugi', 'vmacro14547' => 'vma', 'vmacro15333' => 'vma', 'vmacro18743' => 'vma', 'vmacro20166' => 'vma', 'VMungo0331G0523' => 'vmu', 'VMungo0331G1202' => 'vmu', 'VMungo0720G1228' => 'vmu', 'VMungo0720G1514' => 'vmu', 'VMungo1080G0169' => 'vmu', 'VMungo1127G1475' => 'vmu', 'VMungo1383G1208' => 'vmu', 'VMungo1383G1698' => 'vmu', 'Zm00001eb012270' => 'zma', 'Zm00001eb054100' => 'zma', 'Zm00001eb063350' => 'zma', 'Zm00001eb328560' => 'zma', 'Zm00001eb342820' => 'zma', 'Zm00001eb362210' => 'zma', 'Zm00001eb397730' => 'zma', 'Zm00001eb399750' => 'zma' ), 'gf_id' => 'HOM05D000959', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000959' ), 'data_identifier' => 'HOM05D000959', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000959', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '622', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p07100' => 'bna', 'A03p11720' => 'bna', 'A05p08300' => 'bna', 'A05p13380' => 'bna', 'A09p54130' => 'bna', 'A10p16690' => 'bna', 'A10p16700' => 'bna', 'A10p33390' => 'bna', 'Aa31LG10G16020' => 'aar', 'Aa31LG1G11810' => 'aar', 'Aa31LG1G11830' => 'aar', 'Aa31LG1G22510' => 'aar', 'Aa31LG5G4890' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5793' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2310' => 'aag', 'Actinidia08499' => 'ach', 'Actinidia11262' => 'ach', 'Actinidia23926' => 'ach', 'Actinidia34420' => 'ach', 'Actinidia36970' => 'ach', 'Ah.02g111220' => 'amhyb', 'Ah.15g097750' => 'amhyb', 'AL4G27500' => 'aly', 'AL6G11470' => 'aly', 'AL8G35950' => 'aly', 'AL8G35960' => 'aly', 'AL8G35970' => 'aly', 'Aqoxy1G00912' => 'aox', 'Aqoxy2G02253' => 'aox', 'Aqoxy2G02411' => 'aox', 'Aqoxy5G00485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BZ66YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K8ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM4FUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6BF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HFV7XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25JBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0YNNV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MAKK6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P70IT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP2Z6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V61LZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YWP64R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3S9AI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7PGHH' => 'arhy', 'AT2G32150' => 'ath', 'AT3G62040' => 'ath', 'AT5G02230' => 'ath', 'AT5G59480' => 'ath', 'AT5G59490' => 'ath', 'ATR0332G060' => 'atr', 'ATR0559G190' => 'atr', 'ATR0693G294' => 'atr', 'Atru.chr3.3975' => 'acertr', 'Atru.chr3.3976' => 'acertr', 'Atru.chr3.3977' => 'acertr', 'Atru.chr4.2498' => 'acertr', 'Atru.chr5.838' => 'acertr', 'Atru.chr8.1990' => 'acertr', 'Atru.chr8.1991' => 'acertr', 'Atru.chr8.1992' => 'acertr', 'AUR62001759' => 'cqu', 'AUR62009545' => 'cqu', 'AUR62010474' => 'cqu', 'AUR62025820' => 'cqu', 'AUR62030422' => 'cqu', 'AUR62033605' => 'cqu', 'AUR62038615' => 'cqu', 'AUR62041347' => 'cqu', 'BcaB01g04574' => 'bca', 'BcaB02g09263' => 'bca', 'BcaB02g10453' => 'bca', 'BcaB05g22513' => 'bca', 'BcaB08g36253' => 'bca', 'BcaB08g36254' => 'bca', 'BcaC01g06519' => 'bca', 'BcaC02g11889' => 'bca', 'BcaC03g14010' => 'bca', 'BcaC03g18439' => 'bca', 'BcaC04g19765' => 'bca', 'BcaC09g48432' => 'bca', 'BcaNung07302' => 'bca', 'BolC2t06040H' => 'bol', 'BolC2t07346H' => 'bol', 'BolC3t13817H' => 'bol', 'BolC4t22625H' => 'bol', 'BolC4t23297H' => 'bol', 'BolC8t51278H' => 'bol', 'BolC9t58050H' => 'bol', 'BolC9t58051H' => 'bol', 'BolC9t60163H' => 'bol', 'BraA02t04712Z' => 'bra', 'BraA02t05791Z' => 'bra', 'BraA03t10483Z' => 'bra', 'BraA05t19795Z' => 'bra', 'BraA05t20276Z' => 'bra', 'BraA09t40827Z' => 'bra', 'BraA10t43750Z' => 'bra', 'BraA10t43751Z' => 'bra', 'BraA10t45370Z' => 'bra', 'C02p00400' => 'bna', 'C02p12460' => 'bna', 'C03p13680' => 'bna', 'C04p10270' => 'bna', 'C04p17500' => 'bna', 'C08p37010' => 'bna', 'C09p51880' => 'bna', 'C09p51890' => 'bna', 'C09p74300' => 'bna', 'CAN.G179.26' => 'can', 'CAN.G3384.1' => 'can', 'CAN.G394.68' => 'can', 'CAN.G907.13' => 'can', 'CANSAT11G0012' => 'cansat', 'CANSAT25G1586' => 'cansat', 'CANSAT35G0735' => 'cansat', 'CANSAT54G0556' => 'cansat', 'CANSAT64G0356' => 'cansat', 'CANSAT78G2042' => 'cansat', 'CARHR125920' => 'chi', 'CARHR131910' => 'chi', 'CARHR172390' => 'chi', 'CARHR211140' => 'chi', 'CARHR285850' => 'chi', 'CARHR285860' => 'chi', 'Carub.0004s1347' => 'cru', 'Carub.0004s1960' => 'cru', 'Carub.0005s2880' => 'cru', 'Carub.0006s0107' => 'cru', 'Carub.0008s2015' => 'cru', 'Carub.0008s2016' => 'cru', 'Carub.0008s2017' => 'cru', 'Ca_01315_v3' => 'car', 'Ca_05063_v3' => 'car', 'Ca_10231_v3' => 'car', 'Ca_10913_v3' => 'car', 'Ca_19156_v3' => 'car', 'Ca_23644_v3' => 'car', 'Ca_26735_v3' => 'car', 'Cc01_g13130' => 'ccan', 'Cc02_g21690' => 'ccan', 'Cc03_g03600' => 'ccan', 'Cc06_g02510' => 'ccan', 'CDE02G1265' => 'cde', 'CDE05G0415' => 'cde', 'CDE08G1082' => 'cde', 'Cfa005780' => 'cfa', 'Cfa011522' => 'cfa', 'Cfa011523' => 'cfa', 'Cfa015627' => 'cfa', 'Cfa017359' => 'cfa', 'Ciclev10005687m.g' => 'ccl', 'Ciclev10012173m.g' => 'ccl', 'Ciclev10021621m.g' => 'ccl', 'Ciclev10028968m.g' => 'ccl', 'Ciclev10029907m.g' => 'ccl', 'CiPaw.01G164800' => 'cil', 'CiPaw.07G083700' => 'cil', 'CiPaw.07G127000' => 'cil', 'CiPaw.07G136900' => 'cil', 'CiPaw.08G081700' => 'cil', 'CiPaw.09G194600' => 'cil', 'CiPaw.10G146500' => 'cil', 'CiPaw.13G091500' => 'cil', 'CiPaw.13G091600' => 'cil', 'ClCG00G003390' => 'cla', 'ClCG01G007220' => 'cla', 'ClCG03G001370' => 'cla', 'ClCG04G008100' => 'cla', 'ClCG06G006110' => 'cla', 'ClCG06G006130' => 'cla', 'ClCG10G021210' => 'cla', 'COL.COLO4_07648' => 'col', 'COL.COLO4_07650' => 'col', 'COL.COLO4_07651' => 'col', 'COL.COLO4_14780' => 'col', 'COL.COLO4_18546' => 'col', 'COL.COLO4_18547' => 'col', 'COL.COLO4_23103' => 'col', 'COL.COLO4_30419' => 'col', 'COL.COLO4_34232' => 'col', 'Cpa.g.sc169.20' => 'cpa', 'Cpa.g.sc57.45' => 'cpa', 'Cpa.g.sc58.124' => 'cpa', 'Cpa.g.sc58.125' => 'cpa', 'Cpa.g.sc81.118' => 'cpa', 'Cpa.g.sc81.119' => 'cpa', 'Cre12.g524700' => 'cre', 'CsaV3_1G034430' => 'csa', 'CsaV3_1G034440' => 'csa', 'CsaV3_1G034450' => 'csa', 'CsaV3_3G034830' => 'csa', 'CsaV3_4G025090' => 'csa', 'CsaV3_5G018660' => 'csa', 'CsaV3_6G038160' => 'csa', 'CSS0003447' => 'camsi', 'CSS0017840' => 'camsi', 'CSS0019260' => 'camsi', 'CSS0040375' => 'camsi', 'CSS0042533' => 'camsi', 'DCAR_005960' => 'dca', 'DCAR_012104' => 'dca', 'DCAR_012105' => 'dca', 'DCAR_012293' => 'dca', 'DCAR_015632' => 'dca', 'DCAR_024602' => 'dca', 'DCAR_028752' => 'dca', 'Dinv06261' => 'din', 'Dinv13982' => 'din', 'Dinv17029' => 'din', 'Dinv18463' => 'din', 'Dinv33181' => 'din', 'Dinv35585' => 'din', 'Dinv37161' => 'din', 'Dinv42977' => 'din', 'Dinv43122' => 'din', 'Dinv44517' => 'din', 'Duzib093G0256' => 'dzi', 'Duzib106G1254' => 'dzi', 'Duzib128G1789' => 'dzi', 'Duzib133G0633' => 'dzi', 'Duzib138G0510' => 'dzi', 'Duzib150G1084' => 'dzi', 'Duzib168G0488' => 'dzi', 'Duzib168G1523' => 'dzi', 'Duzib170G0133' => 'dzi', 'ECA234G1433' => 'eca', 'ECA236G1432' => 'eca', 'ECA236G2256' => 'eca', 'ECA236G2365' => 'eca', 'ECA236G4830' => 'eca', 'ECA248G1505' => 'eca', 'EL10Ac3g06431' => 'bvu', 'EL10Ac5g12577' => 'bvu', 'EL10Ac6g13533' => 'bvu', 'EL10Ac7g16045' => 'bvu', 'Eucgr.A01281' => 'egr', 'Eucgr.B02326' => 'egr', 'Eucgr.H03532' => 'egr', 'Eucgr.K00553' => 'egr', 'Eucgr.K03116' => 'egr', 'FAN02G3963' => 'fan', 'FAN05G0438' => 'fan', 'FAN09G2434' => 'fan', 'FAN12G3984' => 'fan', 'FAN14G0798' => 'fan', 'FAN17G0652' => 'fan', 'FAN19G1988' => 'fan', 'FAN22G0632' => 'fan', 'FAN23G0387' => 'fan', 'FAN26G1323' => 'fan', 'FAN28G0666' => 'fan', 'FvH4_1g26080' => 'fve', 'FvH4_3g36780' => 'fve', 'FvH4_4g15270' => 'fve', 'FvH4_6g13490' => 'fve', 'Glyma.01G098700' => 'gma', 'Glyma.03G065900' => 'gma', 'Glyma.03G073754' => 'gma', 'Glyma.03G073758' => 'gma', 'Glyma.03G083200' => 'gma', 'Glyma.03G225500' => 'gma', 'Glyma.05G037766' => 'gma', 'Glyma.07G133500' => 'gma', 'Glyma.10G139400' => 'gma', 'Glyma.10G248900' => 'gma', 'Glyma.11G137800' => 'gma', 'Glyma.12G061300' => 'gma', 'Glyma.13G337900' => 'gma', 'Glyma.15G036600' => 'gma', 'Glyma.18G182800' => 'gma', 'Glyma.19G222500' => 'gma', 'Glyma.20G144800' => 'gma', 'Gohir.A01G222000' => 'ghi', 'Gohir.A03G044000' => 'ghi', 'Gohir.A03G044100' => 'ghi', 'Gohir.A04G083100' => 'ghi', 'Gohir.A07G127200' => 'ghi', 'Gohir.A07G132400' => 'ghi', 'Gohir.A08G000700' => 'ghi', 'Gohir.A11G327300' => 'ghi', 'Gohir.D01G211500' => 'ghi', 'Gohir.D03G123400' => 'ghi', 'Gohir.D03G123500' => 'ghi', 'Gohir.D04G121800' => 'ghi', 'Gohir.D07G131500' => 'ghi', 'Gohir.D07G136600' => 'ghi', 'Gohir.D08G011600' => 'ghi', 'Gohir.D11G346200' => 'ghi', 'Gorai.001G142800' => 'gra', 'Gorai.001G148700' => 'gra', 'Gorai.002G257300' => 'gra', 'Gorai.003G130000' => 'gra', 'Gorai.003G130100' => 'gra', 'Gorai.004G005300' => 'gra', 'Gorai.007G376500' => 'gra', 'Gorai.012G104700' => 'gra', 'GSVIVG01017946001' => 'vvi', 'GSVIVG01024928001' => 'vvi', 'GSVIVG01028227001' => 'vvi', 'GSVIVG01034151001' => 'vvi', 'HanXRQChr05g0135031' => 'han', 'HanXRQChr05g0135041' => 'han', 'HanXRQChr05g0140021' => 'han', 'HanXRQChr06g0178981' => 'han', 'HanXRQChr07g0188251' => 'han', 'HanXRQChr08g0235311' => 'han', 'HanXRQChr09g0271011' => 'han', 'HanXRQChr10g0293321' => 'han', 'HanXRQChr13g0388171' => 'han', 'Haze_00916' => 'cav', 'Haze_05063' => 'cav', 'Haze_20814' => 'cav', 'Haze_24128' => 'cav', 'Hma1.2p1_0745F.1_g212010' => 'hma', 'Hma1.2p1_0757F.1_g213260' => 'hma', 'Hma1.2p1_0936F.1_g238840' => 'hma', 'Hma1.2p1_1735F.1_g299890' => 'hma', 'Hma1.2p1_1861F.1_g305685' => 'hma', 'HPP92_003397' => 'vpl', 'HPP92_012597' => 'vpl', 'HPP92_015520' => 'vpl', 'HPP92_015539' => 'vpl', 'HPP92_020373' => 'vpl', 'Hund04938' => 'sun', 'Hund10677' => 'sun', 'Hund11033' => 'sun', 'Hund12155' => 'sun', 'Lalb_Chr01g0022551' => 'lal', 'Lalb_Chr03g0042341' => 'lal', 'Lalb_Chr07g0192931' => 'lal', 'Lalb_Chr12g0209551' => 'lal', 'Lalb_Chr19g0125251' => 'lal', 'Lalb_Chr19g0137891' => 'lal', 'Lalb_Chr21g0304641' => 'lal', 'Lalb_Chr21g0309881' => 'lal', 'Lj1A5T12' => 'lonja', 'Lj1C148G10' => 'lonja', 'Lj2A93T83' => 'lonja', 'Lj3A738G68' => 'lonja', 'Lj3C966T1' => 'lonja', 'Lj3g0018958' => 'lja', 'Lj3g0021831' => 'lja', 'Lj3g0025443' => 'lja', 'Lj4g0026809' => 'lja', 'Lj5g0012558' => 'lja', 'Lj5g0021586' => 'lja', 'Lsat_1_v5_gn_5_156840' => 'lsa', 'Lsat_1_v5_gn_8_73460' => 'lsa', 'Lsat_1_v5_gn_8_73481' => 'lsa', 'Lsat_1_v5_gn_9_31601' => 'lsa', 'Lsat_1_v5_gn_9_77320' => 'lsa', 'Manes.01G171300' => 'mes', 'Manes.01G171400' => 'mes', 'Manes.01G236100' => 'mes', 'Manes.02G130500' => 'mes', 'Manes.02G130600' => 'mes', 'Manes.03G180200' => 'mes', 'Manes.05G007000' => 'mes', 'Manes.08G084400' => 'mes', 'Manes.09G092600' => 'mes', 'Manes.15G027900' => 'mes', 'MBI04_g40948_MAGBIO' => 'mbi', 'MBI14_g12123_MAGBIO' => 'mbi', 'MBI18_g28915_MAGBIO' => 'mbi', 'MCO09G053' => 'mco', 'MCO11G782' => 'mco', 'MCO15G215' => 'mco', 'MD03G1088500' => 'mdo', 'MD03G1088600' => 'mdo', 'MD04G1130800' => 'mdo', 'MD09G1291700' => 'mdo', 'MD11G1097500' => 'mdo', 'MD11G1097600' => 'mdo', 'MD12G1143900' => 'mdo', 'MD13G1191400' => 'mdo', 'MD16G1191500' => 'mdo', 'Medtr1g085570' => 'mtr', 'Medtr1g104610' => 'mtr', 'Medtr2g097520' => 'mtr', 'Medtr4g021800' => 'mtr', 'Medtr4g021825' => 'mtr', 'Medtr4g064270' => 'mtr', 'Medtr4g064380' => 'mtr', 'Medtr7g062150' => 'mtr', 'MELO3C003138.2' => 'cme', 'MELO3C005187.2' => 'cme', 'MELO3C009252.2' => 'cme', 'MELO3C014481.2' => 'cme', 'MELO3C020616.2' => 'cme', 'MELO3C020617.2' => 'cme', 'MELO3C020618.2' => 'cme', 'Migut.G00328' => 'egut', 'Migut.J00320' => 'egut', 'Migut.L01000' => 'egut', 'Migut.L01953' => 'egut', 'MSTRG.10253' => 'ama', 'MSTRG.19077' => 'ama', 'MSTRG.26780' => 'ama', 'MSTRG.4023' => 'ama', 'MSTRG.5655' => 'ama', 'MSTRG.9992' => 'ama', 'Nitab4.5_0000043g0310' => 'nta', 'Nitab4.5_0000463g0080' => 'nta', 'Nitab4.5_0000705g0170' => 'nta', 'Nitab4.5_0001326g0060' => 'nta', 'Nitab4.5_0001628g0030' => 'nta', 'Nitab4.5_0002103g0110' => 'nta', 'Nitab4.5_0002946g0030' => 'nta', 'Nitab4.5_0004639g0030' => 'nta', 'Nn2g11149' => 'nnu', 'Nn2g13389' => 'nnu', 'Nn4g25326' => 'nnu', 'Nn4g26290' => 'nnu', 'Nn5g29865' => 'nnu', 'Oeu004163.1' => 'oeu', 'Oeu006901.1' => 'oeu', 'Oeu010096.1' => 'oeu', 'Oeu024340.1' => 'oeu', 'Oeu048369.1' => 'oeu', 'Os01g0973000' => 'osa', 'Os03g0273800' => 'osa', 'Os03g0701200' => 'osa', 'Os03g0834050' => 'osa', 'Os07g0634400' => 'osa', 'Peaxi162Scf00092g01414' => 'pax', 'Peaxi162Scf00165g00818' => 'pax', 'Peaxi162Scf00309g00516' => 'pax', 'Peaxi162Scf00774g00218' => 'pax', 'PGR004G1824' => 'pgr', 'PGR004G2606' => 'pgr', 'PGR031G2716' => 'pgr', 'PGR102G2460' => 'pgr', 'PGR142G2599' => 'pgr', 'PGSC0003DMG400000843' => 'stu', 'PGSC0003DMG400008829' => 'stu', 'PGSC0003DMG400030418' => 'stu', 'PGSC0003DMG400031834' => 'stu', 'PGSC0003DMG401028300' => 'stu', 'PGSC0003DMG402028300' => 'stu', 'Phvul.001G219300' => 'pvu', 'Phvul.007G056000' => 'pvu', 'Phvul.007G208000' => 'pvu', 'Phvul.008G119500' => 'pvu', 'Phvul.010G011200' => 'pvu', 'Phvul.010G014800' => 'pvu', 'Phvul.011G062900' => 'pvu', 'Phvul.L007043' => 'pvu', 'Potri.001G242300' => 'ptr', 'Potri.002G185300' => 'ptr', 'Potri.006G086900' => 'ptr', 'Potri.008G151700' => 'ptr', 'Potri.009G033500' => 'ptr', 'Potri.010G089300' => 'ptr', 'Potri.014G110800' => 'ptr', 'Pp3c27_8130' => 'ppa', 'Pp3c6_27410' => 'ppa', 'PRCOL_00001659' => 'pco', 'PRCOL_00001927' => 'pco', 'PRCOL_00003649' => 'pco', 'Prupe.1G011600' => 'ppe', 'Prupe.3G000800' => 'ppe', 'Prupe.3G001100' => 'ppe', 'Prupe.6G072700' => 'ppe', 'Prupe.6G072800' => 'ppe', 'Prupe.6G257300' => 'ppe', 'Prupe.8G033000' => 'ppe', 'Psat0s2633g0080' => 'psa', 'Psat0s3396g0080' => 'psa', 'Psat0s3396g0200' => 'psa', 'Psat3g139080' => 'psa', 'Psat5g285080' => 'psa', 'Psat6g157760' => 'psa', 'Psat6g208440' => 'psa', 'Psat7g215320' => 'psa', 'Psat7g215400' => 'psa', 'Psat7g235600' => 'psa', 'Psat7g235760' => 'psa', 'PSO063G4603' => 'pso', 'PSO210G0182' => 'pso', 'PSO210G0196' => 'pso', 'PSO339G0394' => 'pso', 'PSO339G4127' => 'pso', 'PSO513G0064' => 'pso', 'PSO761G0079' => 'pso', 'QL01p031003' => 'qlo', 'QL01p031078' => 'qlo', 'QL06p003004' => 'qlo', 'QL07p048731' => 'qlo', 'QL09p037427' => 'qlo', 'RcHm_v2.0_Chr3g0466361' => 'rch', 'RcHm_v2.0_Chr3g0485571' => 'rch', 'RcHm_v2.0_Chr4g0416551' => 'rch', 'RcHm_v2.0_Chr5g0065831' => 'rch', 'Rhsim01G0230500' => 'rsi', 'Rhsim05G0194000' => 'rsi', 'Rhsim08G0250400' => 'rsi', 'Sabra02G0131000' => 'sbr', 'Sabra06G0066300' => 'sbr', 'Sabra08G0115500' => 'sbr', 'Sabra09G0023900' => 'sbr', 'Sabra10G0054000' => 'sbr', 'Sabra14G0081500' => 'sbr', 'Sabra16G0147100' => 'sbr', 'SalBow2G2957' => 'sbo', 'SalBow4G3320' => 'sbo', 'SalBow8G1894' => 'sbo', 'Sc07g0007950' => 'sci', 'Sc12g0001360' => 'sci', 'Sc13g0004330' => 'sci', 'Sc20g0005010' => 'sci', 'Sed0000361' => 'sed', 'Sed0001706' => 'sed', 'Sed0002422' => 'sed', 'Sed0004029' => 'sed', 'Sed0004602' => 'sed', 'Sed0004943' => 'sed', 'Sed0008646' => 'sed', 'Sed0023313' => 'sed', 'Sed0024843' => 'sed', 'SEGI_00081' => 'sgi', 'SEGI_00947' => 'sgi', 'SEGI_04046' => 'sgi', 'SEGI_06880' => 'sgi', 'SEGI_09736' => 'sgi', 'SEGI_12741' => 'sgi', 'SEGI_14530' => 'sgi', 'SEGI_20705' => 'sgi', 'SEGI_26088' => 'sgi', 'SEGI_28323' => 'sgi', 'SEGI_33343' => 'sgi', 'SGA_v2.0_scaffold126G33775' => 'sas', 'SGA_v2.0_scaffold2G01337' => 'sas', 'SGA_v2.0_scaffold38G15006' => 'sas', 'SGA_v2.0_scaffold39G15264' => 'sas', 'SGA_v2.0_scaffold453G51880' => 'sas', 'SHI12696' => 'shi', 'SMO367G1096' => 'smo', 'Solyc01g068630.3' => 'sly', 'Solyc05g011880.3' => 'sly', 'Solyc06g076300.3' => 'sly', 'Solyc09g010940.4' => 'sly', 'Solyc09g075890.3' => 'sly', 'Sopen01g030560' => 'spe', 'Sopen05g006630' => 'spe', 'Sopen06g032720' => 'spe', 'Sopen09g005660' => 'spe', 'Sopen09g030690' => 'spe', 'Sp4g14540' => 'spa', 'Sp4g20030' => 'spa', 'Sp5g01320' => 'spa', 'Sp6g21170' => 'spa', 'Sp6g21180' => 'spa', 'Sp6g21190' => 'spa', 'Sp6g40220' => 'spa', 'TAR362G0122' => 'tar', 'TAR362G1338' => 'tar', 'TAR369G0590' => 'tar', 'TAR371G0824' => 'tar', 'TAR622G1429' => 'tar', 'TAR623G0734' => 'tar', 'TAR625G0441' => 'tar', 'TAR629G0976' => 'tar', 'TAR633G1195' => 'tar', 'TAR636G2660' => 'tar', 'THA.LOC104799440' => 'tha', 'THA.LOC104800966' => 'tha', 'THA.LOC104806559' => 'tha', 'THA.LOC104810765' => 'tha', 'THA.LOC104816266' => 'tha', 'THA.LOC104817419' => 'tha', 'THA.LOC104827021' => 'tha', 'Thecc.01G327400' => 'tca', 'Thecc.04G229200' => 'tca', 'Thecc.05G037400' => 'tca', 'Thecc.09G318600' => 'tca', 'Thecc.09G318700' => 'tca', 'Thhalv10006238m.g' => 'esa', 'Thhalv10014321m.g' => 'esa', 'Thhalv10014335m.g' => 'esa', 'Thhalv10015826m.g' => 'esa', 'Thhalv10017107m.g' => 'esa', 'Thhalv10017180m.g' => 'esa', 'Thhalv10029339m.g' => 'esa', 'TPR.G1699' => 'tpr', 'TPR.G23609' => 'tpr', 'TPR.G3081' => 'tpr', 'TPR.G40397' => 'tpr', 'TPR.G5522' => 'tpr', 'TPR.G5618' => 'tpr', 'TPR.G5626' => 'tpr', 'TWI09G1632' => 'twi', 'TWI23G1230' => 'twi', 'TWI53G1064' => 'twi', 'TWI59G0751' => 'twi', 'TWI74G0947' => 'twi', 'TWI77G0337' => 'twi', 'TWI79G1254' => 'twi', 'unitig_0.g2341' => 'ugi', 'unitig_26.g10006' => 'ugi', 'unitig_26.g10008' => 'ugi', 'unitig_26.g9192' => 'ugi', 'vmacro14547' => 'vma', 'vmacro15333' => 'vma', 'vmacro18743' => 'vma', 'vmacro20166' => 'vma', 'VMungo0331G0523' => 'vmu', 'VMungo0331G1202' => 'vmu', 'VMungo0720G1228' => 'vmu', 'VMungo0720G1514' => 'vmu', 'VMungo1080G0169' => 'vmu', 'VMungo1127G1475' => 'vmu', 'VMungo1383G1208' => 'vmu', 'VMungo1383G1698' => 'vmu', 'Zm00001eb012270' => 'zma', 'Zm00001eb054100' => 'zma', 'Zm00001eb063350' => 'zma', 'Zm00001eb328560' => 'zma', 'Zm00001eb342820' => 'zma', 'Zm00001eb362210' => 'zma', 'Zm00001eb397730' => 'zma', 'Zm00001eb399750' => 'zma' ) $gf_id = 'HOM05D000959' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000959' ) $data_identifier = 'HOM05D000959' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 5, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 5, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 10, 'mbi' => (int) 3, 'mco' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 2, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 3, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 11, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399750' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000959', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '622', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p07100' => 'bna', 'A03p11720' => 'bna', 'A05p08300' => 'bna', 'A05p13380' => 'bna', 'A09p54130' => 'bna', 'A10p16690' => 'bna', 'A10p16700' => 'bna', 'A10p33390' => 'bna', 'Aa31LG10G16020' => 'aar', 'Aa31LG1G11810' => 'aar', 'Aa31LG1G11830' => 'aar', 'Aa31LG1G22510' => 'aar', 'Aa31LG5G4890' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5793' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2310' => 'aag', 'Actinidia08499' => 'ach', 'Actinidia11262' => 'ach', 'Actinidia23926' => 'ach', 'Actinidia34420' => 'ach', 'Actinidia36970' => 'ach', 'Ah.02g111220' => 'amhyb', 'Ah.15g097750' => 'amhyb', 'AL4G27500' => 'aly', 'AL6G11470' => 'aly', 'AL8G35950' => 'aly', 'AL8G35960' => 'aly', 'AL8G35970' => 'aly', 'Aqoxy1G00912' => 'aox', 'Aqoxy2G02253' => 'aox', 'Aqoxy2G02411' => 'aox', 'Aqoxy5G00485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BZ66YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K8ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM4FUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6BF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HFV7XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25JBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0YNNV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MAKK6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P70IT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP2Z6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V61LZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YWP64R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3S9AI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7PGHH' => 'arhy', 'AT2G32150' => 'ath', 'AT3G62040' => 'ath', 'AT5G02230' => 'ath', 'AT5G59480' => 'ath', 'AT5G59490' => 'ath', 'ATR0332G060' => 'atr', 'ATR0559G190' => 'atr', 'ATR0693G294' => 'atr', 'Atru.chr3.3975' => 'acertr', 'Atru.chr3.3976' => 'acertr', 'Atru.chr3.3977' => 'acertr', 'Atru.chr4.2498' => 'acertr', 'Atru.chr5.838' => 'acertr', 'Atru.chr8.1990' => 'acertr', 'Atru.chr8.1991' => 'acertr', 'Atru.chr8.1992' => 'acertr', 'AUR62001759' => 'cqu', 'AUR62009545' => 'cqu', 'AUR62010474' => 'cqu', 'AUR62025820' => 'cqu', 'AUR62030422' => 'cqu', 'AUR62033605' => 'cqu', 'AUR62038615' => 'cqu', 'AUR62041347' => 'cqu', 'BcaB01g04574' => 'bca', 'BcaB02g09263' => 'bca', 'BcaB02g10453' => 'bca', 'BcaB05g22513' => 'bca', 'BcaB08g36253' => 'bca', 'BcaB08g36254' => 'bca', 'BcaC01g06519' => 'bca', 'BcaC02g11889' => 'bca', 'BcaC03g14010' => 'bca', 'BcaC03g18439' => 'bca', 'BcaC04g19765' => 'bca', 'BcaC09g48432' => 'bca', 'BcaNung07302' => 'bca', 'BolC2t06040H' => 'bol', 'BolC2t07346H' => 'bol', 'BolC3t13817H' => 'bol', 'BolC4t22625H' => 'bol', 'BolC4t23297H' => 'bol', 'BolC8t51278H' => 'bol', 'BolC9t58050H' => 'bol', 'BolC9t58051H' => 'bol', 'BolC9t60163H' => 'bol', 'BraA02t04712Z' => 'bra', 'BraA02t05791Z' => 'bra', 'BraA03t10483Z' => 'bra', 'BraA05t19795Z' => 'bra', 'BraA05t20276Z' => 'bra', 'BraA09t40827Z' => 'bra', 'BraA10t43750Z' => 'bra', 'BraA10t43751Z' => 'bra', 'BraA10t45370Z' => 'bra', 'C02p00400' => 'bna', 'C02p12460' => 'bna', 'C03p13680' => 'bna', 'C04p10270' => 'bna', 'C04p17500' => 'bna', 'C08p37010' => 'bna', 'C09p51880' => 'bna', 'C09p51890' => 'bna', 'C09p74300' => 'bna', 'CAN.G179.26' => 'can', 'CAN.G3384.1' => 'can', 'CAN.G394.68' => 'can', 'CAN.G907.13' => 'can', 'CANSAT11G0012' => 'cansat', 'CANSAT25G1586' => 'cansat', 'CANSAT35G0735' => 'cansat', 'CANSAT54G0556' => 'cansat', 'CANSAT64G0356' => 'cansat', 'CANSAT78G2042' => 'cansat', 'CARHR125920' => 'chi', 'CARHR131910' => 'chi', 'CARHR172390' => 'chi', 'CARHR211140' => 'chi', 'CARHR285850' => 'chi', 'CARHR285860' => 'chi', 'Carub.0004s1347' => 'cru', 'Carub.0004s1960' => 'cru', 'Carub.0005s2880' => 'cru', 'Carub.0006s0107' => 'cru', 'Carub.0008s2015' => 'cru', 'Carub.0008s2016' => 'cru', 'Carub.0008s2017' => 'cru', 'Ca_01315_v3' => 'car', 'Ca_05063_v3' => 'car', 'Ca_10231_v3' => 'car', 'Ca_10913_v3' => 'car', 'Ca_19156_v3' => 'car', 'Ca_23644_v3' => 'car', 'Ca_26735_v3' => 'car', 'Cc01_g13130' => 'ccan', 'Cc02_g21690' => 'ccan', 'Cc03_g03600' => 'ccan', 'Cc06_g02510' => 'ccan', 'CDE02G1265' => 'cde', 'CDE05G0415' => 'cde', 'CDE08G1082' => 'cde', 'Cfa005780' => 'cfa', 'Cfa011522' => 'cfa', 'Cfa011523' => 'cfa', 'Cfa015627' => 'cfa', 'Cfa017359' => 'cfa', 'Ciclev10005687m.g' => 'ccl', 'Ciclev10012173m.g' => 'ccl', 'Ciclev10021621m.g' => 'ccl', 'Ciclev10028968m.g' => 'ccl', 'Ciclev10029907m.g' => 'ccl', 'CiPaw.01G164800' => 'cil', 'CiPaw.07G083700' => 'cil', 'CiPaw.07G127000' => 'cil', 'CiPaw.07G136900' => 'cil', 'CiPaw.08G081700' => 'cil', 'CiPaw.09G194600' => 'cil', 'CiPaw.10G146500' => 'cil', 'CiPaw.13G091500' => 'cil', 'CiPaw.13G091600' => 'cil', 'ClCG00G003390' => 'cla', 'ClCG01G007220' => 'cla', 'ClCG03G001370' => 'cla', 'ClCG04G008100' => 'cla', 'ClCG06G006110' => 'cla', 'ClCG06G006130' => 'cla', 'ClCG10G021210' => 'cla', 'COL.COLO4_07648' => 'col', 'COL.COLO4_07650' => 'col', 'COL.COLO4_07651' => 'col', 'COL.COLO4_14780' => 'col', 'COL.COLO4_18546' => 'col', 'COL.COLO4_18547' => 'col', 'COL.COLO4_23103' => 'col', 'COL.COLO4_30419' => 'col', 'COL.COLO4_34232' => 'col', 'Cpa.g.sc169.20' => 'cpa', 'Cpa.g.sc57.45' => 'cpa', 'Cpa.g.sc58.124' => 'cpa', 'Cpa.g.sc58.125' => 'cpa', 'Cpa.g.sc81.118' => 'cpa', 'Cpa.g.sc81.119' => 'cpa', 'Cre12.g524700' => 'cre', 'CsaV3_1G034430' => 'csa', 'CsaV3_1G034440' => 'csa', 'CsaV3_1G034450' => 'csa', 'CsaV3_3G034830' => 'csa', 'CsaV3_4G025090' => 'csa', 'CsaV3_5G018660' => 'csa', 'CsaV3_6G038160' => 'csa', 'CSS0003447' => 'camsi', 'CSS0017840' => 'camsi', 'CSS0019260' => 'camsi', 'CSS0040375' => 'camsi', 'CSS0042533' => 'camsi', 'DCAR_005960' => 'dca', 'DCAR_012104' => 'dca', 'DCAR_012105' => 'dca', 'DCAR_012293' => 'dca', 'DCAR_015632' => 'dca', 'DCAR_024602' => 'dca', 'DCAR_028752' => 'dca', 'Dinv06261' => 'din', 'Dinv13982' => 'din', 'Dinv17029' => 'din', 'Dinv18463' => 'din', 'Dinv33181' => 'din', 'Dinv35585' => 'din', 'Dinv37161' => 'din', 'Dinv42977' => 'din', 'Dinv43122' => 'din', 'Dinv44517' => 'din', 'Duzib093G0256' => 'dzi', 'Duzib106G1254' => 'dzi', 'Duzib128G1789' => 'dzi', 'Duzib133G0633' => 'dzi', 'Duzib138G0510' => 'dzi', 'Duzib150G1084' => 'dzi', 'Duzib168G0488' => 'dzi', 'Duzib168G1523' => 'dzi', 'Duzib170G0133' => 'dzi', 'ECA234G1433' => 'eca', 'ECA236G1432' => 'eca', 'ECA236G2256' => 'eca', 'ECA236G2365' => 'eca', 'ECA236G4830' => 'eca', 'ECA248G1505' => 'eca', 'EL10Ac3g06431' => 'bvu', 'EL10Ac5g12577' => 'bvu', 'EL10Ac6g13533' => 'bvu', 'EL10Ac7g16045' => 'bvu', 'Eucgr.A01281' => 'egr', 'Eucgr.B02326' => 'egr', 'Eucgr.H03532' => 'egr', 'Eucgr.K00553' => 'egr', 'Eucgr.K03116' => 'egr', 'FAN02G3963' => 'fan', 'FAN05G0438' => 'fan', 'FAN09G2434' => 'fan', 'FAN12G3984' => 'fan', 'FAN14G0798' => 'fan', 'FAN17G0652' => 'fan', 'FAN19G1988' => 'fan', 'FAN22G0632' => 'fan', 'FAN23G0387' => 'fan', 'FAN26G1323' => 'fan', 'FAN28G0666' => 'fan', 'FvH4_1g26080' => 'fve', 'FvH4_3g36780' => 'fve', 'FvH4_4g15270' => 'fve', 'FvH4_6g13490' => 'fve', 'Glyma.01G098700' => 'gma', 'Glyma.03G065900' => 'gma', 'Glyma.03G073754' => 'gma', 'Glyma.03G073758' => 'gma', 'Glyma.03G083200' => 'gma', 'Glyma.03G225500' => 'gma', 'Glyma.05G037766' => 'gma', 'Glyma.07G133500' => 'gma', 'Glyma.10G139400' => 'gma', 'Glyma.10G248900' => 'gma', 'Glyma.11G137800' => 'gma', 'Glyma.12G061300' => 'gma', 'Glyma.13G337900' => 'gma', 'Glyma.15G036600' => 'gma', 'Glyma.18G182800' => 'gma', 'Glyma.19G222500' => 'gma', 'Glyma.20G144800' => 'gma', 'Gohir.A01G222000' => 'ghi', 'Gohir.A03G044000' => 'ghi', 'Gohir.A03G044100' => 'ghi', 'Gohir.A04G083100' => 'ghi', 'Gohir.A07G127200' => 'ghi', 'Gohir.A07G132400' => 'ghi', 'Gohir.A08G000700' => 'ghi', 'Gohir.A11G327300' => 'ghi', 'Gohir.D01G211500' => 'ghi', 'Gohir.D03G123400' => 'ghi', 'Gohir.D03G123500' => 'ghi', 'Gohir.D04G121800' => 'ghi', 'Gohir.D07G131500' => 'ghi', 'Gohir.D07G136600' => 'ghi', 'Gohir.D08G011600' => 'ghi', 'Gohir.D11G346200' => 'ghi', 'Gorai.001G142800' => 'gra', 'Gorai.001G148700' => 'gra', 'Gorai.002G257300' => 'gra', 'Gorai.003G130000' => 'gra', 'Gorai.003G130100' => 'gra', 'Gorai.004G005300' => 'gra', 'Gorai.007G376500' => 'gra', 'Gorai.012G104700' => 'gra', 'GSVIVG01017946001' => 'vvi', 'GSVIVG01024928001' => 'vvi', 'GSVIVG01028227001' => 'vvi', 'GSVIVG01034151001' => 'vvi', 'HanXRQChr05g0135031' => 'han', 'HanXRQChr05g0135041' => 'han', 'HanXRQChr05g0140021' => 'han', 'HanXRQChr06g0178981' => 'han', 'HanXRQChr07g0188251' => 'han', 'HanXRQChr08g0235311' => 'han', 'HanXRQChr09g0271011' => 'han', 'HanXRQChr10g0293321' => 'han', 'HanXRQChr13g0388171' => 'han', 'Haze_00916' => 'cav', 'Haze_05063' => 'cav', 'Haze_20814' => 'cav', 'Haze_24128' => 'cav', 'Hma1.2p1_0745F.1_g212010' => 'hma', 'Hma1.2p1_0757F.1_g213260' => 'hma', 'Hma1.2p1_0936F.1_g238840' => 'hma', 'Hma1.2p1_1735F.1_g299890' => 'hma', 'Hma1.2p1_1861F.1_g305685' => 'hma', 'HPP92_003397' => 'vpl', 'HPP92_012597' => 'vpl', 'HPP92_015520' => 'vpl', 'HPP92_015539' => 'vpl', 'HPP92_020373' => 'vpl', 'Hund04938' => 'sun', 'Hund10677' => 'sun', 'Hund11033' => 'sun', 'Hund12155' => 'sun', 'Lalb_Chr01g0022551' => 'lal', 'Lalb_Chr03g0042341' => 'lal', 'Lalb_Chr07g0192931' => 'lal', 'Lalb_Chr12g0209551' => 'lal', 'Lalb_Chr19g0125251' => 'lal', 'Lalb_Chr19g0137891' => 'lal', 'Lalb_Chr21g0304641' => 'lal', 'Lalb_Chr21g0309881' => 'lal', 'Lj1A5T12' => 'lonja', 'Lj1C148G10' => 'lonja', 'Lj2A93T83' => 'lonja', 'Lj3A738G68' => 'lonja', 'Lj3C966T1' => 'lonja', 'Lj3g0018958' => 'lja', 'Lj3g0021831' => 'lja', 'Lj3g0025443' => 'lja', 'Lj4g0026809' => 'lja', 'Lj5g0012558' => 'lja', 'Lj5g0021586' => 'lja', 'Lsat_1_v5_gn_5_156840' => 'lsa', 'Lsat_1_v5_gn_8_73460' => 'lsa', 'Lsat_1_v5_gn_8_73481' => 'lsa', 'Lsat_1_v5_gn_9_31601' => 'lsa', 'Lsat_1_v5_gn_9_77320' => 'lsa', 'Manes.01G171300' => 'mes', 'Manes.01G171400' => 'mes', 'Manes.01G236100' => 'mes', 'Manes.02G130500' => 'mes', 'Manes.02G130600' => 'mes', 'Manes.03G180200' => 'mes', 'Manes.05G007000' => 'mes', 'Manes.08G084400' => 'mes', 'Manes.09G092600' => 'mes', 'Manes.15G027900' => 'mes', 'MBI04_g40948_MAGBIO' => 'mbi', 'MBI14_g12123_MAGBIO' => 'mbi', 'MBI18_g28915_MAGBIO' => 'mbi', 'MCO09G053' => 'mco', 'MCO11G782' => 'mco', 'MCO15G215' => 'mco', 'MD03G1088500' => 'mdo', 'MD03G1088600' => 'mdo', 'MD04G1130800' => 'mdo', 'MD09G1291700' => 'mdo', 'MD11G1097500' => 'mdo', 'MD11G1097600' => 'mdo', 'MD12G1143900' => 'mdo', 'MD13G1191400' => 'mdo', 'MD16G1191500' => 'mdo', 'Medtr1g085570' => 'mtr', 'Medtr1g104610' => 'mtr', 'Medtr2g097520' => 'mtr', 'Medtr4g021800' => 'mtr', 'Medtr4g021825' => 'mtr', 'Medtr4g064270' => 'mtr', 'Medtr4g064380' => 'mtr', 'Medtr7g062150' => 'mtr', 'MELO3C003138.2' => 'cme', 'MELO3C005187.2' => 'cme', 'MELO3C009252.2' => 'cme', 'MELO3C014481.2' => 'cme', 'MELO3C020616.2' => 'cme', 'MELO3C020617.2' => 'cme', 'MELO3C020618.2' => 'cme', 'Migut.G00328' => 'egut', 'Migut.J00320' => 'egut', 'Migut.L01000' => 'egut', 'Migut.L01953' => 'egut', 'MSTRG.10253' => 'ama', 'MSTRG.19077' => 'ama', 'MSTRG.26780' => 'ama', 'MSTRG.4023' => 'ama', 'MSTRG.5655' => 'ama', 'MSTRG.9992' => 'ama', 'Nitab4.5_0000043g0310' => 'nta', 'Nitab4.5_0000463g0080' => 'nta', 'Nitab4.5_0000705g0170' => 'nta', 'Nitab4.5_0001326g0060' => 'nta', 'Nitab4.5_0001628g0030' => 'nta', 'Nitab4.5_0002103g0110' => 'nta', 'Nitab4.5_0002946g0030' => 'nta', 'Nitab4.5_0004639g0030' => 'nta', 'Nn2g11149' => 'nnu', 'Nn2g13389' => 'nnu', 'Nn4g25326' => 'nnu', 'Nn4g26290' => 'nnu', 'Nn5g29865' => 'nnu', 'Oeu004163.1' => 'oeu', 'Oeu006901.1' => 'oeu', 'Oeu010096.1' => 'oeu', 'Oeu024340.1' => 'oeu', 'Oeu048369.1' => 'oeu', 'Os01g0973000' => 'osa', 'Os03g0273800' => 'osa', 'Os03g0701200' => 'osa', 'Os03g0834050' => 'osa', 'Os07g0634400' => 'osa', 'Peaxi162Scf00092g01414' => 'pax', 'Peaxi162Scf00165g00818' => 'pax', 'Peaxi162Scf00309g00516' => 'pax', 'Peaxi162Scf00774g00218' => 'pax', 'PGR004G1824' => 'pgr', 'PGR004G2606' => 'pgr', 'PGR031G2716' => 'pgr', 'PGR102G2460' => 'pgr', 'PGR142G2599' => 'pgr', 'PGSC0003DMG400000843' => 'stu', 'PGSC0003DMG400008829' => 'stu', 'PGSC0003DMG400030418' => 'stu', 'PGSC0003DMG400031834' => 'stu', 'PGSC0003DMG401028300' => 'stu', 'PGSC0003DMG402028300' => 'stu', 'Phvul.001G219300' => 'pvu', 'Phvul.007G056000' => 'pvu', 'Phvul.007G208000' => 'pvu', 'Phvul.008G119500' => 'pvu', 'Phvul.010G011200' => 'pvu', 'Phvul.010G014800' => 'pvu', 'Phvul.011G062900' => 'pvu', 'Phvul.L007043' => 'pvu', 'Potri.001G242300' => 'ptr', 'Potri.002G185300' => 'ptr', 'Potri.006G086900' => 'ptr', 'Potri.008G151700' => 'ptr', 'Potri.009G033500' => 'ptr', 'Potri.010G089300' => 'ptr', 'Potri.014G110800' => 'ptr', 'Pp3c27_8130' => 'ppa', 'Pp3c6_27410' => 'ppa', 'PRCOL_00001659' => 'pco', 'PRCOL_00001927' => 'pco', 'PRCOL_00003649' => 'pco', 'Prupe.1G011600' => 'ppe', 'Prupe.3G000800' => 'ppe', 'Prupe.3G001100' => 'ppe', 'Prupe.6G072700' => 'ppe', 'Prupe.6G072800' => 'ppe', 'Prupe.6G257300' => 'ppe', 'Prupe.8G033000' => 'ppe', 'Psat0s2633g0080' => 'psa', 'Psat0s3396g0080' => 'psa', 'Psat0s3396g0200' => 'psa', 'Psat3g139080' => 'psa', 'Psat5g285080' => 'psa', 'Psat6g157760' => 'psa', 'Psat6g208440' => 'psa', 'Psat7g215320' => 'psa', 'Psat7g215400' => 'psa', 'Psat7g235600' => 'psa', 'Psat7g235760' => 'psa', 'PSO063G4603' => 'pso', 'PSO210G0182' => 'pso', 'PSO210G0196' => 'pso', 'PSO339G0394' => 'pso', 'PSO339G4127' => 'pso', 'PSO513G0064' => 'pso', 'PSO761G0079' => 'pso', 'QL01p031003' => 'qlo', 'QL01p031078' => 'qlo', 'QL06p003004' => 'qlo', 'QL07p048731' => 'qlo', 'QL09p037427' => 'qlo', 'RcHm_v2.0_Chr3g0466361' => 'rch', 'RcHm_v2.0_Chr3g0485571' => 'rch', 'RcHm_v2.0_Chr4g0416551' => 'rch', 'RcHm_v2.0_Chr5g0065831' => 'rch', 'Rhsim01G0230500' => 'rsi', 'Rhsim05G0194000' => 'rsi', 'Rhsim08G0250400' => 'rsi', 'Sabra02G0131000' => 'sbr', 'Sabra06G0066300' => 'sbr', 'Sabra08G0115500' => 'sbr', 'Sabra09G0023900' => 'sbr', 'Sabra10G0054000' => 'sbr', 'Sabra14G0081500' => 'sbr', 'Sabra16G0147100' => 'sbr', 'SalBow2G2957' => 'sbo', 'SalBow4G3320' => 'sbo', 'SalBow8G1894' => 'sbo', 'Sc07g0007950' => 'sci', 'Sc12g0001360' => 'sci', 'Sc13g0004330' => 'sci', 'Sc20g0005010' => 'sci', 'Sed0000361' => 'sed', 'Sed0001706' => 'sed', 'Sed0002422' => 'sed', 'Sed0004029' => 'sed', 'Sed0004602' => 'sed', 'Sed0004943' => 'sed', 'Sed0008646' => 'sed', 'Sed0023313' => 'sed', 'Sed0024843' => 'sed', 'SEGI_00081' => 'sgi', 'SEGI_00947' => 'sgi', 'SEGI_04046' => 'sgi', 'SEGI_06880' => 'sgi', 'SEGI_09736' => 'sgi', 'SEGI_12741' => 'sgi', 'SEGI_14530' => 'sgi', 'SEGI_20705' => 'sgi', 'SEGI_26088' => 'sgi', 'SEGI_28323' => 'sgi', 'SEGI_33343' => 'sgi', 'SGA_v2.0_scaffold126G33775' => 'sas', 'SGA_v2.0_scaffold2G01337' => 'sas', 'SGA_v2.0_scaffold38G15006' => 'sas', 'SGA_v2.0_scaffold39G15264' => 'sas', 'SGA_v2.0_scaffold453G51880' => 'sas', 'SHI12696' => 'shi', 'SMO367G1096' => 'smo', 'Solyc01g068630.3' => 'sly', 'Solyc05g011880.3' => 'sly', 'Solyc06g076300.3' => 'sly', 'Solyc09g010940.4' => 'sly', 'Solyc09g075890.3' => 'sly', 'Sopen01g030560' => 'spe', 'Sopen05g006630' => 'spe', 'Sopen06g032720' => 'spe', 'Sopen09g005660' => 'spe', 'Sopen09g030690' => 'spe', 'Sp4g14540' => 'spa', 'Sp4g20030' => 'spa', 'Sp5g01320' => 'spa', 'Sp6g21170' => 'spa', 'Sp6g21180' => 'spa', 'Sp6g21190' => 'spa', 'Sp6g40220' => 'spa', 'TAR362G0122' => 'tar', 'TAR362G1338' => 'tar', 'TAR369G0590' => 'tar', 'TAR371G0824' => 'tar', 'TAR622G1429' => 'tar', 'TAR623G0734' => 'tar', 'TAR625G0441' => 'tar', 'TAR629G0976' => 'tar', 'TAR633G1195' => 'tar', 'TAR636G2660' => 'tar', 'THA.LOC104799440' => 'tha', 'THA.LOC104800966' => 'tha', 'THA.LOC104806559' => 'tha', 'THA.LOC104810765' => 'tha', 'THA.LOC104816266' => 'tha', 'THA.LOC104817419' => 'tha', 'THA.LOC104827021' => 'tha', 'Thecc.01G327400' => 'tca', 'Thecc.04G229200' => 'tca', 'Thecc.05G037400' => 'tca', 'Thecc.09G318600' => 'tca', 'Thecc.09G318700' => 'tca', 'Thhalv10006238m.g' => 'esa', 'Thhalv10014321m.g' => 'esa', 'Thhalv10014335m.g' => 'esa', 'Thhalv10015826m.g' => 'esa', 'Thhalv10017107m.g' => 'esa', 'Thhalv10017180m.g' => 'esa', 'Thhalv10029339m.g' => 'esa', 'TPR.G1699' => 'tpr', 'TPR.G23609' => 'tpr', 'TPR.G3081' => 'tpr', 'TPR.G40397' => 'tpr', 'TPR.G5522' => 'tpr', 'TPR.G5618' => 'tpr', 'TPR.G5626' => 'tpr', 'TWI09G1632' => 'twi', 'TWI23G1230' => 'twi', 'TWI53G1064' => 'twi', 'TWI59G0751' => 'twi', 'TWI74G0947' => 'twi', 'TWI77G0337' => 'twi', 'TWI79G1254' => 'twi', 'unitig_0.g2341' => 'ugi', 'unitig_26.g10006' => 'ugi', 'unitig_26.g10008' => 'ugi', 'unitig_26.g9192' => 'ugi', 'vmacro14547' => 'vma', 'vmacro15333' => 'vma', 'vmacro18743' => 'vma', 'vmacro20166' => 'vma', 'VMungo0331G0523' => 'vmu', 'VMungo0331G1202' => 'vmu', 'VMungo0720G1228' => 'vmu', 'VMungo0720G1514' => 'vmu', 'VMungo1080G0169' => 'vmu', 'VMungo1127G1475' => 'vmu', 'VMungo1383G1208' => 'vmu', 'VMungo1383G1698' => 'vmu', 'Zm00001eb012270' => 'zma', 'Zm00001eb054100' => 'zma', 'Zm00001eb063350' => 'zma', 'Zm00001eb328560' => 'zma', 'Zm00001eb342820' => 'zma', 'Zm00001eb362210' => 'zma', 'Zm00001eb397730' => 'zma', 'Zm00001eb399750' => 'zma' ), 'gf_id' => 'HOM05D000959', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000959' ), 'data_identifier' => 'HOM05D000959', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000959', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '622', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p07100' => 'bna', 'A03p11720' => 'bna', 'A05p08300' => 'bna', 'A05p13380' => 'bna', 'A09p54130' => 'bna', 'A10p16690' => 'bna', 'A10p16700' => 'bna', 'A10p33390' => 'bna', 'Aa31LG10G16020' => 'aar', 'Aa31LG1G11810' => 'aar', 'Aa31LG1G11830' => 'aar', 'Aa31LG1G22510' => 'aar', 'Aa31LG5G4890' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5793' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2310' => 'aag', 'Actinidia08499' => 'ach', 'Actinidia11262' => 'ach', 'Actinidia23926' => 'ach', 'Actinidia34420' => 'ach', 'Actinidia36970' => 'ach', 'Ah.02g111220' => 'amhyb', 'Ah.15g097750' => 'amhyb', 'AL4G27500' => 'aly', 'AL6G11470' => 'aly', 'AL8G35950' => 'aly', 'AL8G35960' => 'aly', 'AL8G35970' => 'aly', 'Aqoxy1G00912' => 'aox', 'Aqoxy2G02253' => 'aox', 'Aqoxy2G02411' => 'aox', 'Aqoxy5G00485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BZ66YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K8ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM4FUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6BF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HFV7XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25JBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0YNNV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MAKK6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P70IT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP2Z6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V61LZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YWP64R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3S9AI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7PGHH' => 'arhy', 'AT2G32150' => 'ath', 'AT3G62040' => 'ath', 'AT5G02230' => 'ath', 'AT5G59480' => 'ath', 'AT5G59490' => 'ath', 'ATR0332G060' => 'atr', 'ATR0559G190' => 'atr', 'ATR0693G294' => 'atr', 'Atru.chr3.3975' => 'acertr', 'Atru.chr3.3976' => 'acertr', 'Atru.chr3.3977' => 'acertr', 'Atru.chr4.2498' => 'acertr', 'Atru.chr5.838' => 'acertr', 'Atru.chr8.1990' => 'acertr', 'Atru.chr8.1991' => 'acertr', 'Atru.chr8.1992' => 'acertr', 'AUR62001759' => 'cqu', 'AUR62009545' => 'cqu', 'AUR62010474' => 'cqu', 'AUR62025820' => 'cqu', 'AUR62030422' => 'cqu', 'AUR62033605' => 'cqu', 'AUR62038615' => 'cqu', 'AUR62041347' => 'cqu', 'BcaB01g04574' => 'bca', 'BcaB02g09263' => 'bca', 'BcaB02g10453' => 'bca', 'BcaB05g22513' => 'bca', 'BcaB08g36253' => 'bca', 'BcaB08g36254' => 'bca', 'BcaC01g06519' => 'bca', 'BcaC02g11889' => 'bca', 'BcaC03g14010' => 'bca', 'BcaC03g18439' => 'bca', 'BcaC04g19765' => 'bca', 'BcaC09g48432' => 'bca', 'BcaNung07302' => 'bca', 'BolC2t06040H' => 'bol', 'BolC2t07346H' => 'bol', 'BolC3t13817H' => 'bol', 'BolC4t22625H' => 'bol', 'BolC4t23297H' => 'bol', 'BolC8t51278H' => 'bol', 'BolC9t58050H' => 'bol', 'BolC9t58051H' => 'bol', 'BolC9t60163H' => 'bol', 'BraA02t04712Z' => 'bra', 'BraA02t05791Z' => 'bra', 'BraA03t10483Z' => 'bra', 'BraA05t19795Z' => 'bra', 'BraA05t20276Z' => 'bra', 'BraA09t40827Z' => 'bra', 'BraA10t43750Z' => 'bra', 'BraA10t43751Z' => 'bra', 'BraA10t45370Z' => 'bra', 'C02p00400' => 'bna', 'C02p12460' => 'bna', 'C03p13680' => 'bna', 'C04p10270' => 'bna', 'C04p17500' => 'bna', 'C08p37010' => 'bna', 'C09p51880' => 'bna', 'C09p51890' => 'bna', 'C09p74300' => 'bna', 'CAN.G179.26' => 'can', 'CAN.G3384.1' => 'can', 'CAN.G394.68' => 'can', 'CAN.G907.13' => 'can', 'CANSAT11G0012' => 'cansat', 'CANSAT25G1586' => 'cansat', 'CANSAT35G0735' => 'cansat', 'CANSAT54G0556' => 'cansat', 'CANSAT64G0356' => 'cansat', 'CANSAT78G2042' => 'cansat', 'CARHR125920' => 'chi', 'CARHR131910' => 'chi', 'CARHR172390' => 'chi', 'CARHR211140' => 'chi', 'CARHR285850' => 'chi', 'CARHR285860' => 'chi', 'Carub.0004s1347' => 'cru', 'Carub.0004s1960' => 'cru', 'Carub.0005s2880' => 'cru', 'Carub.0006s0107' => 'cru', 'Carub.0008s2015' => 'cru', 'Carub.0008s2016' => 'cru', 'Carub.0008s2017' => 'cru', 'Ca_01315_v3' => 'car', 'Ca_05063_v3' => 'car', 'Ca_10231_v3' => 'car', 'Ca_10913_v3' => 'car', 'Ca_19156_v3' => 'car', 'Ca_23644_v3' => 'car', 'Ca_26735_v3' => 'car', 'Cc01_g13130' => 'ccan', 'Cc02_g21690' => 'ccan', 'Cc03_g03600' => 'ccan', 'Cc06_g02510' => 'ccan', 'CDE02G1265' => 'cde', 'CDE05G0415' => 'cde', 'CDE08G1082' => 'cde', 'Cfa005780' => 'cfa', 'Cfa011522' => 'cfa', 'Cfa011523' => 'cfa', 'Cfa015627' => 'cfa', 'Cfa017359' => 'cfa', 'Ciclev10005687m.g' => 'ccl', 'Ciclev10012173m.g' => 'ccl', 'Ciclev10021621m.g' => 'ccl', 'Ciclev10028968m.g' => 'ccl', 'Ciclev10029907m.g' => 'ccl', 'CiPaw.01G164800' => 'cil', 'CiPaw.07G083700' => 'cil', 'CiPaw.07G127000' => 'cil', 'CiPaw.07G136900' => 'cil', 'CiPaw.08G081700' => 'cil', 'CiPaw.09G194600' => 'cil', 'CiPaw.10G146500' => 'cil', 'CiPaw.13G091500' => 'cil', 'CiPaw.13G091600' => 'cil', 'ClCG00G003390' => 'cla', 'ClCG01G007220' => 'cla', 'ClCG03G001370' => 'cla', 'ClCG04G008100' => 'cla', 'ClCG06G006110' => 'cla', 'ClCG06G006130' => 'cla', 'ClCG10G021210' => 'cla', 'COL.COLO4_07648' => 'col', 'COL.COLO4_07650' => 'col', 'COL.COLO4_07651' => 'col', 'COL.COLO4_14780' => 'col', 'COL.COLO4_18546' => 'col', 'COL.COLO4_18547' => 'col', 'COL.COLO4_23103' => 'col', 'COL.COLO4_30419' => 'col', 'COL.COLO4_34232' => 'col', 'Cpa.g.sc169.20' => 'cpa', 'Cpa.g.sc57.45' => 'cpa', 'Cpa.g.sc58.124' => 'cpa', 'Cpa.g.sc58.125' => 'cpa', 'Cpa.g.sc81.118' => 'cpa', 'Cpa.g.sc81.119' => 'cpa', 'Cre12.g524700' => 'cre', 'CsaV3_1G034430' => 'csa', 'CsaV3_1G034440' => 'csa', 'CsaV3_1G034450' => 'csa', 'CsaV3_3G034830' => 'csa', 'CsaV3_4G025090' => 'csa', 'CsaV3_5G018660' => 'csa', 'CsaV3_6G038160' => 'csa', 'CSS0003447' => 'camsi', 'CSS0017840' => 'camsi', 'CSS0019260' => 'camsi', 'CSS0040375' => 'camsi', 'CSS0042533' => 'camsi', 'DCAR_005960' => 'dca', 'DCAR_012104' => 'dca', 'DCAR_012105' => 'dca', 'DCAR_012293' => 'dca', 'DCAR_015632' => 'dca', 'DCAR_024602' => 'dca', 'DCAR_028752' => 'dca', 'Dinv06261' => 'din', 'Dinv13982' => 'din', 'Dinv17029' => 'din', 'Dinv18463' => 'din', 'Dinv33181' => 'din', 'Dinv35585' => 'din', 'Dinv37161' => 'din', 'Dinv42977' => 'din', 'Dinv43122' => 'din', 'Dinv44517' => 'din', 'Duzib093G0256' => 'dzi', 'Duzib106G1254' => 'dzi', 'Duzib128G1789' => 'dzi', 'Duzib133G0633' => 'dzi', 'Duzib138G0510' => 'dzi', 'Duzib150G1084' => 'dzi', 'Duzib168G0488' => 'dzi', 'Duzib168G1523' => 'dzi', 'Duzib170G0133' => 'dzi', 'ECA234G1433' => 'eca', 'ECA236G1432' => 'eca', 'ECA236G2256' => 'eca', 'ECA236G2365' => 'eca', 'ECA236G4830' => 'eca', 'ECA248G1505' => 'eca', 'EL10Ac3g06431' => 'bvu', 'EL10Ac5g12577' => 'bvu', 'EL10Ac6g13533' => 'bvu', 'EL10Ac7g16045' => 'bvu', 'Eucgr.A01281' => 'egr', 'Eucgr.B02326' => 'egr', 'Eucgr.H03532' => 'egr', 'Eucgr.K00553' => 'egr', 'Eucgr.K03116' => 'egr', 'FAN02G3963' => 'fan', 'FAN05G0438' => 'fan', 'FAN09G2434' => 'fan', 'FAN12G3984' => 'fan', 'FAN14G0798' => 'fan', 'FAN17G0652' => 'fan', 'FAN19G1988' => 'fan', 'FAN22G0632' => 'fan', 'FAN23G0387' => 'fan', 'FAN26G1323' => 'fan', 'FAN28G0666' => 'fan', 'FvH4_1g26080' => 'fve', 'FvH4_3g36780' => 'fve', 'FvH4_4g15270' => 'fve', 'FvH4_6g13490' => 'fve', 'Glyma.01G098700' => 'gma', 'Glyma.03G065900' => 'gma', 'Glyma.03G073754' => 'gma', 'Glyma.03G073758' => 'gma', 'Glyma.03G083200' => 'gma', 'Glyma.03G225500' => 'gma', 'Glyma.05G037766' => 'gma', 'Glyma.07G133500' => 'gma', 'Glyma.10G139400' => 'gma', 'Glyma.10G248900' => 'gma', 'Glyma.11G137800' => 'gma', 'Glyma.12G061300' => 'gma', 'Glyma.13G337900' => 'gma', 'Glyma.15G036600' => 'gma', 'Glyma.18G182800' => 'gma', 'Glyma.19G222500' => 'gma', 'Glyma.20G144800' => 'gma', 'Gohir.A01G222000' => 'ghi', 'Gohir.A03G044000' => 'ghi', 'Gohir.A03G044100' => 'ghi', 'Gohir.A04G083100' => 'ghi', 'Gohir.A07G127200' => 'ghi', 'Gohir.A07G132400' => 'ghi', 'Gohir.A08G000700' => 'ghi', 'Gohir.A11G327300' => 'ghi', 'Gohir.D01G211500' => 'ghi', 'Gohir.D03G123400' => 'ghi', 'Gohir.D03G123500' => 'ghi', 'Gohir.D04G121800' => 'ghi', 'Gohir.D07G131500' => 'ghi', 'Gohir.D07G136600' => 'ghi', 'Gohir.D08G011600' => 'ghi', 'Gohir.D11G346200' => 'ghi', 'Gorai.001G142800' => 'gra', 'Gorai.001G148700' => 'gra', 'Gorai.002G257300' => 'gra', 'Gorai.003G130000' => 'gra', 'Gorai.003G130100' => 'gra', 'Gorai.004G005300' => 'gra', 'Gorai.007G376500' => 'gra', 'Gorai.012G104700' => 'gra', 'GSVIVG01017946001' => 'vvi', 'GSVIVG01024928001' => 'vvi', 'GSVIVG01028227001' => 'vvi', 'GSVIVG01034151001' => 'vvi', 'HanXRQChr05g0135031' => 'han', 'HanXRQChr05g0135041' => 'han', 'HanXRQChr05g0140021' => 'han', 'HanXRQChr06g0178981' => 'han', 'HanXRQChr07g0188251' => 'han', 'HanXRQChr08g0235311' => 'han', 'HanXRQChr09g0271011' => 'han', 'HanXRQChr10g0293321' => 'han', 'HanXRQChr13g0388171' => 'han', 'Haze_00916' => 'cav', 'Haze_05063' => 'cav', 'Haze_20814' => 'cav', 'Haze_24128' => 'cav', 'Hma1.2p1_0745F.1_g212010' => 'hma', 'Hma1.2p1_0757F.1_g213260' => 'hma', 'Hma1.2p1_0936F.1_g238840' => 'hma', 'Hma1.2p1_1735F.1_g299890' => 'hma', 'Hma1.2p1_1861F.1_g305685' => 'hma', 'HPP92_003397' => 'vpl', 'HPP92_012597' => 'vpl', 'HPP92_015520' => 'vpl', 'HPP92_015539' => 'vpl', 'HPP92_020373' => 'vpl', 'Hund04938' => 'sun', 'Hund10677' => 'sun', 'Hund11033' => 'sun', 'Hund12155' => 'sun', 'Lalb_Chr01g0022551' => 'lal', 'Lalb_Chr03g0042341' => 'lal', 'Lalb_Chr07g0192931' => 'lal', 'Lalb_Chr12g0209551' => 'lal', 'Lalb_Chr19g0125251' => 'lal', 'Lalb_Chr19g0137891' => 'lal', 'Lalb_Chr21g0304641' => 'lal', 'Lalb_Chr21g0309881' => 'lal', 'Lj1A5T12' => 'lonja', 'Lj1C148G10' => 'lonja', 'Lj2A93T83' => 'lonja', 'Lj3A738G68' => 'lonja', 'Lj3C966T1' => 'lonja', 'Lj3g0018958' => 'lja', 'Lj3g0021831' => 'lja', 'Lj3g0025443' => 'lja', 'Lj4g0026809' => 'lja', 'Lj5g0012558' => 'lja', 'Lj5g0021586' => 'lja', 'Lsat_1_v5_gn_5_156840' => 'lsa', 'Lsat_1_v5_gn_8_73460' => 'lsa', 'Lsat_1_v5_gn_8_73481' => 'lsa', 'Lsat_1_v5_gn_9_31601' => 'lsa', 'Lsat_1_v5_gn_9_77320' => 'lsa', 'Manes.01G171300' => 'mes', 'Manes.01G171400' => 'mes', 'Manes.01G236100' => 'mes', 'Manes.02G130500' => 'mes', 'Manes.02G130600' => 'mes', 'Manes.03G180200' => 'mes', 'Manes.05G007000' => 'mes', 'Manes.08G084400' => 'mes', 'Manes.09G092600' => 'mes', 'Manes.15G027900' => 'mes', 'MBI04_g40948_MAGBIO' => 'mbi', 'MBI14_g12123_MAGBIO' => 'mbi', 'MBI18_g28915_MAGBIO' => 'mbi', 'MCO09G053' => 'mco', 'MCO11G782' => 'mco', 'MCO15G215' => 'mco', 'MD03G1088500' => 'mdo', 'MD03G1088600' => 'mdo', 'MD04G1130800' => 'mdo', 'MD09G1291700' => 'mdo', 'MD11G1097500' => 'mdo', 'MD11G1097600' => 'mdo', 'MD12G1143900' => 'mdo', 'MD13G1191400' => 'mdo', 'MD16G1191500' => 'mdo', 'Medtr1g085570' => 'mtr', 'Medtr1g104610' => 'mtr', 'Medtr2g097520' => 'mtr', 'Medtr4g021800' => 'mtr', 'Medtr4g021825' => 'mtr', 'Medtr4g064270' => 'mtr', 'Medtr4g064380' => 'mtr', 'Medtr7g062150' => 'mtr', 'MELO3C003138.2' => 'cme', 'MELO3C005187.2' => 'cme', 'MELO3C009252.2' => 'cme', 'MELO3C014481.2' => 'cme', 'MELO3C020616.2' => 'cme', 'MELO3C020617.2' => 'cme', 'MELO3C020618.2' => 'cme', 'Migut.G00328' => 'egut', 'Migut.J00320' => 'egut', 'Migut.L01000' => 'egut', 'Migut.L01953' => 'egut', 'MSTRG.10253' => 'ama', 'MSTRG.19077' => 'ama', 'MSTRG.26780' => 'ama', 'MSTRG.4023' => 'ama', 'MSTRG.5655' => 'ama', 'MSTRG.9992' => 'ama', 'Nitab4.5_0000043g0310' => 'nta', 'Nitab4.5_0000463g0080' => 'nta', 'Nitab4.5_0000705g0170' => 'nta', 'Nitab4.5_0001326g0060' => 'nta', 'Nitab4.5_0001628g0030' => 'nta', 'Nitab4.5_0002103g0110' => 'nta', 'Nitab4.5_0002946g0030' => 'nta', 'Nitab4.5_0004639g0030' => 'nta', 'Nn2g11149' => 'nnu', 'Nn2g13389' => 'nnu', 'Nn4g25326' => 'nnu', 'Nn4g26290' => 'nnu', 'Nn5g29865' => 'nnu', 'Oeu004163.1' => 'oeu', 'Oeu006901.1' => 'oeu', 'Oeu010096.1' => 'oeu', 'Oeu024340.1' => 'oeu', 'Oeu048369.1' => 'oeu', 'Os01g0973000' => 'osa', 'Os03g0273800' => 'osa', 'Os03g0701200' => 'osa', 'Os03g0834050' => 'osa', 'Os07g0634400' => 'osa', 'Peaxi162Scf00092g01414' => 'pax', 'Peaxi162Scf00165g00818' => 'pax', 'Peaxi162Scf00309g00516' => 'pax', 'Peaxi162Scf00774g00218' => 'pax', 'PGR004G1824' => 'pgr', 'PGR004G2606' => 'pgr', 'PGR031G2716' => 'pgr', 'PGR102G2460' => 'pgr', 'PGR142G2599' => 'pgr', 'PGSC0003DMG400000843' => 'stu', 'PGSC0003DMG400008829' => 'stu', 'PGSC0003DMG400030418' => 'stu', 'PGSC0003DMG400031834' => 'stu', 'PGSC0003DMG401028300' => 'stu', 'PGSC0003DMG402028300' => 'stu', 'Phvul.001G219300' => 'pvu', 'Phvul.007G056000' => 'pvu', 'Phvul.007G208000' => 'pvu', 'Phvul.008G119500' => 'pvu', 'Phvul.010G011200' => 'pvu', 'Phvul.010G014800' => 'pvu', 'Phvul.011G062900' => 'pvu', 'Phvul.L007043' => 'pvu', 'Potri.001G242300' => 'ptr', 'Potri.002G185300' => 'ptr', 'Potri.006G086900' => 'ptr', 'Potri.008G151700' => 'ptr', 'Potri.009G033500' => 'ptr', 'Potri.010G089300' => 'ptr', 'Potri.014G110800' => 'ptr', 'Pp3c27_8130' => 'ppa', 'Pp3c6_27410' => 'ppa', 'PRCOL_00001659' => 'pco', 'PRCOL_00001927' => 'pco', 'PRCOL_00003649' => 'pco', 'Prupe.1G011600' => 'ppe', 'Prupe.3G000800' => 'ppe', 'Prupe.3G001100' => 'ppe', 'Prupe.6G072700' => 'ppe', 'Prupe.6G072800' => 'ppe', 'Prupe.6G257300' => 'ppe', 'Prupe.8G033000' => 'ppe', 'Psat0s2633g0080' => 'psa', 'Psat0s3396g0080' => 'psa', 'Psat0s3396g0200' => 'psa', 'Psat3g139080' => 'psa', 'Psat5g285080' => 'psa', 'Psat6g157760' => 'psa', 'Psat6g208440' => 'psa', 'Psat7g215320' => 'psa', 'Psat7g215400' => 'psa', 'Psat7g235600' => 'psa', 'Psat7g235760' => 'psa', 'PSO063G4603' => 'pso', 'PSO210G0182' => 'pso', 'PSO210G0196' => 'pso', 'PSO339G0394' => 'pso', 'PSO339G4127' => 'pso', 'PSO513G0064' => 'pso', 'PSO761G0079' => 'pso', 'QL01p031003' => 'qlo', 'QL01p031078' => 'qlo', 'QL06p003004' => 'qlo', 'QL07p048731' => 'qlo', 'QL09p037427' => 'qlo', 'RcHm_v2.0_Chr3g0466361' => 'rch', 'RcHm_v2.0_Chr3g0485571' => 'rch', 'RcHm_v2.0_Chr4g0416551' => 'rch', 'RcHm_v2.0_Chr5g0065831' => 'rch', 'Rhsim01G0230500' => 'rsi', 'Rhsim05G0194000' => 'rsi', 'Rhsim08G0250400' => 'rsi', 'Sabra02G0131000' => 'sbr', 'Sabra06G0066300' => 'sbr', 'Sabra08G0115500' => 'sbr', 'Sabra09G0023900' => 'sbr', 'Sabra10G0054000' => 'sbr', 'Sabra14G0081500' => 'sbr', 'Sabra16G0147100' => 'sbr', 'SalBow2G2957' => 'sbo', 'SalBow4G3320' => 'sbo', 'SalBow8G1894' => 'sbo', 'Sc07g0007950' => 'sci', 'Sc12g0001360' => 'sci', 'Sc13g0004330' => 'sci', 'Sc20g0005010' => 'sci', 'Sed0000361' => 'sed', 'Sed0001706' => 'sed', 'Sed0002422' => 'sed', 'Sed0004029' => 'sed', 'Sed0004602' => 'sed', 'Sed0004943' => 'sed', 'Sed0008646' => 'sed', 'Sed0023313' => 'sed', 'Sed0024843' => 'sed', 'SEGI_00081' => 'sgi', 'SEGI_00947' => 'sgi', 'SEGI_04046' => 'sgi', 'SEGI_06880' => 'sgi', 'SEGI_09736' => 'sgi', 'SEGI_12741' => 'sgi', 'SEGI_14530' => 'sgi', 'SEGI_20705' => 'sgi', 'SEGI_26088' => 'sgi', 'SEGI_28323' => 'sgi', 'SEGI_33343' => 'sgi', 'SGA_v2.0_scaffold126G33775' => 'sas', 'SGA_v2.0_scaffold2G01337' => 'sas', 'SGA_v2.0_scaffold38G15006' => 'sas', 'SGA_v2.0_scaffold39G15264' => 'sas', 'SGA_v2.0_scaffold453G51880' => 'sas', 'SHI12696' => 'shi', 'SMO367G1096' => 'smo', 'Solyc01g068630.3' => 'sly', 'Solyc05g011880.3' => 'sly', 'Solyc06g076300.3' => 'sly', 'Solyc09g010940.4' => 'sly', 'Solyc09g075890.3' => 'sly', 'Sopen01g030560' => 'spe', 'Sopen05g006630' => 'spe', 'Sopen06g032720' => 'spe', 'Sopen09g005660' => 'spe', 'Sopen09g030690' => 'spe', 'Sp4g14540' => 'spa', 'Sp4g20030' => 'spa', 'Sp5g01320' => 'spa', 'Sp6g21170' => 'spa', 'Sp6g21180' => 'spa', 'Sp6g21190' => 'spa', 'Sp6g40220' => 'spa', 'TAR362G0122' => 'tar', 'TAR362G1338' => 'tar', 'TAR369G0590' => 'tar', 'TAR371G0824' => 'tar', 'TAR622G1429' => 'tar', 'TAR623G0734' => 'tar', 'TAR625G0441' => 'tar', 'TAR629G0976' => 'tar', 'TAR633G1195' => 'tar', 'TAR636G2660' => 'tar', 'THA.LOC104799440' => 'tha', 'THA.LOC104800966' => 'tha', 'THA.LOC104806559' => 'tha', 'THA.LOC104810765' => 'tha', 'THA.LOC104816266' => 'tha', 'THA.LOC104817419' => 'tha', 'THA.LOC104827021' => 'tha', 'Thecc.01G327400' => 'tca', 'Thecc.04G229200' => 'tca', 'Thecc.05G037400' => 'tca', 'Thecc.09G318600' => 'tca', 'Thecc.09G318700' => 'tca', 'Thhalv10006238m.g' => 'esa', 'Thhalv10014321m.g' => 'esa', 'Thhalv10014335m.g' => 'esa', 'Thhalv10015826m.g' => 'esa', 'Thhalv10017107m.g' => 'esa', 'Thhalv10017180m.g' => 'esa', 'Thhalv10029339m.g' => 'esa', 'TPR.G1699' => 'tpr', 'TPR.G23609' => 'tpr', 'TPR.G3081' => 'tpr', 'TPR.G40397' => 'tpr', 'TPR.G5522' => 'tpr', 'TPR.G5618' => 'tpr', 'TPR.G5626' => 'tpr', 'TWI09G1632' => 'twi', 'TWI23G1230' => 'twi', 'TWI53G1064' => 'twi', 'TWI59G0751' => 'twi', 'TWI74G0947' => 'twi', 'TWI77G0337' => 'twi', 'TWI79G1254' => 'twi', 'unitig_0.g2341' => 'ugi', 'unitig_26.g10006' => 'ugi', 'unitig_26.g10008' => 'ugi', 'unitig_26.g9192' => 'ugi', 'vmacro14547' => 'vma', 'vmacro15333' => 'vma', 'vmacro18743' => 'vma', 'vmacro20166' => 'vma', 'VMungo0331G0523' => 'vmu', 'VMungo0331G1202' => 'vmu', 'VMungo0720G1228' => 'vmu', 'VMungo0720G1514' => 'vmu', 'VMungo1080G0169' => 'vmu', 'VMungo1127G1475' => 'vmu', 'VMungo1383G1208' => 'vmu', 'VMungo1383G1698' => 'vmu', 'Zm00001eb012270' => 'zma', 'Zm00001eb054100' => 'zma', 'Zm00001eb063350' => 'zma', 'Zm00001eb328560' => 'zma', 'Zm00001eb342820' => 'zma', 'Zm00001eb362210' => 'zma', 'Zm00001eb397730' => 'zma', 'Zm00001eb399750' => 'zma' ) $gf_id = 'HOM05D000959' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000959' ) $data_identifier = 'HOM05D000959' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 5, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 5, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 10, 'mbi' => (int) 3, 'mco' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 2, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 3, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 11, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399750' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000959', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '622', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p07100' => 'bna', 'A03p11720' => 'bna', 'A05p08300' => 'bna', 'A05p13380' => 'bna', 'A09p54130' => 'bna', 'A10p16690' => 'bna', 'A10p16700' => 'bna', 'A10p33390' => 'bna', 'Aa31LG10G16020' => 'aar', 'Aa31LG1G11810' => 'aar', 'Aa31LG1G11830' => 'aar', 'Aa31LG1G22510' => 'aar', 'Aa31LG5G4890' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5793' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2310' => 'aag', 'Actinidia08499' => 'ach', 'Actinidia11262' => 'ach', 'Actinidia23926' => 'ach', 'Actinidia34420' => 'ach', 'Actinidia36970' => 'ach', 'Ah.02g111220' => 'amhyb', 'Ah.15g097750' => 'amhyb', 'AL4G27500' => 'aly', 'AL6G11470' => 'aly', 'AL8G35950' => 'aly', 'AL8G35960' => 'aly', 'AL8G35970' => 'aly', 'Aqoxy1G00912' => 'aox', 'Aqoxy2G02253' => 'aox', 'Aqoxy2G02411' => 'aox', 'Aqoxy5G00485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BZ66YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K8ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM4FUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6BF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HFV7XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25JBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0YNNV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MAKK6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P70IT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP2Z6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V61LZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YWP64R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3S9AI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7PGHH' => 'arhy', 'AT2G32150' => 'ath', 'AT3G62040' => 'ath', 'AT5G02230' => 'ath', 'AT5G59480' => 'ath', 'AT5G59490' => 'ath', 'ATR0332G060' => 'atr', 'ATR0559G190' => 'atr', 'ATR0693G294' => 'atr', 'Atru.chr3.3975' => 'acertr', 'Atru.chr3.3976' => 'acertr', 'Atru.chr3.3977' => 'acertr', 'Atru.chr4.2498' => 'acertr', 'Atru.chr5.838' => 'acertr', 'Atru.chr8.1990' => 'acertr', 'Atru.chr8.1991' => 'acertr', 'Atru.chr8.1992' => 'acertr', 'AUR62001759' => 'cqu', 'AUR62009545' => 'cqu', 'AUR62010474' => 'cqu', 'AUR62025820' => 'cqu', 'AUR62030422' => 'cqu', 'AUR62033605' => 'cqu', 'AUR62038615' => 'cqu', 'AUR62041347' => 'cqu', 'BcaB01g04574' => 'bca', 'BcaB02g09263' => 'bca', 'BcaB02g10453' => 'bca', 'BcaB05g22513' => 'bca', 'BcaB08g36253' => 'bca', 'BcaB08g36254' => 'bca', 'BcaC01g06519' => 'bca', 'BcaC02g11889' => 'bca', 'BcaC03g14010' => 'bca', 'BcaC03g18439' => 'bca', 'BcaC04g19765' => 'bca', 'BcaC09g48432' => 'bca', 'BcaNung07302' => 'bca', 'BolC2t06040H' => 'bol', 'BolC2t07346H' => 'bol', 'BolC3t13817H' => 'bol', 'BolC4t22625H' => 'bol', 'BolC4t23297H' => 'bol', 'BolC8t51278H' => 'bol', 'BolC9t58050H' => 'bol', 'BolC9t58051H' => 'bol', 'BolC9t60163H' => 'bol', 'BraA02t04712Z' => 'bra', 'BraA02t05791Z' => 'bra', 'BraA03t10483Z' => 'bra', 'BraA05t19795Z' => 'bra', 'BraA05t20276Z' => 'bra', 'BraA09t40827Z' => 'bra', 'BraA10t43750Z' => 'bra', 'BraA10t43751Z' => 'bra', 'BraA10t45370Z' => 'bra', 'C02p00400' => 'bna', 'C02p12460' => 'bna', 'C03p13680' => 'bna', 'C04p10270' => 'bna', 'C04p17500' => 'bna', 'C08p37010' => 'bna', 'C09p51880' => 'bna', 'C09p51890' => 'bna', 'C09p74300' => 'bna', 'CAN.G179.26' => 'can', 'CAN.G3384.1' => 'can', 'CAN.G394.68' => 'can', 'CAN.G907.13' => 'can', 'CANSAT11G0012' => 'cansat', 'CANSAT25G1586' => 'cansat', 'CANSAT35G0735' => 'cansat', 'CANSAT54G0556' => 'cansat', 'CANSAT64G0356' => 'cansat', 'CANSAT78G2042' => 'cansat', 'CARHR125920' => 'chi', 'CARHR131910' => 'chi', 'CARHR172390' => 'chi', 'CARHR211140' => 'chi', 'CARHR285850' => 'chi', 'CARHR285860' => 'chi', 'Carub.0004s1347' => 'cru', 'Carub.0004s1960' => 'cru', 'Carub.0005s2880' => 'cru', 'Carub.0006s0107' => 'cru', 'Carub.0008s2015' => 'cru', 'Carub.0008s2016' => 'cru', 'Carub.0008s2017' => 'cru', 'Ca_01315_v3' => 'car', 'Ca_05063_v3' => 'car', 'Ca_10231_v3' => 'car', 'Ca_10913_v3' => 'car', 'Ca_19156_v3' => 'car', 'Ca_23644_v3' => 'car', 'Ca_26735_v3' => 'car', 'Cc01_g13130' => 'ccan', 'Cc02_g21690' => 'ccan', 'Cc03_g03600' => 'ccan', 'Cc06_g02510' => 'ccan', 'CDE02G1265' => 'cde', 'CDE05G0415' => 'cde', 'CDE08G1082' => 'cde', 'Cfa005780' => 'cfa', 'Cfa011522' => 'cfa', 'Cfa011523' => 'cfa', 'Cfa015627' => 'cfa', 'Cfa017359' => 'cfa', 'Ciclev10005687m.g' => 'ccl', 'Ciclev10012173m.g' => 'ccl', 'Ciclev10021621m.g' => 'ccl', 'Ciclev10028968m.g' => 'ccl', 'Ciclev10029907m.g' => 'ccl', 'CiPaw.01G164800' => 'cil', 'CiPaw.07G083700' => 'cil', 'CiPaw.07G127000' => 'cil', 'CiPaw.07G136900' => 'cil', 'CiPaw.08G081700' => 'cil', 'CiPaw.09G194600' => 'cil', 'CiPaw.10G146500' => 'cil', 'CiPaw.13G091500' => 'cil', 'CiPaw.13G091600' => 'cil', 'ClCG00G003390' => 'cla', 'ClCG01G007220' => 'cla', 'ClCG03G001370' => 'cla', 'ClCG04G008100' => 'cla', 'ClCG06G006110' => 'cla', 'ClCG06G006130' => 'cla', 'ClCG10G021210' => 'cla', 'COL.COLO4_07648' => 'col', 'COL.COLO4_07650' => 'col', 'COL.COLO4_07651' => 'col', 'COL.COLO4_14780' => 'col', 'COL.COLO4_18546' => 'col', 'COL.COLO4_18547' => 'col', 'COL.COLO4_23103' => 'col', 'COL.COLO4_30419' => 'col', 'COL.COLO4_34232' => 'col', 'Cpa.g.sc169.20' => 'cpa', 'Cpa.g.sc57.45' => 'cpa', 'Cpa.g.sc58.124' => 'cpa', 'Cpa.g.sc58.125' => 'cpa', 'Cpa.g.sc81.118' => 'cpa', 'Cpa.g.sc81.119' => 'cpa', 'Cre12.g524700' => 'cre', 'CsaV3_1G034430' => 'csa', 'CsaV3_1G034440' => 'csa', 'CsaV3_1G034450' => 'csa', 'CsaV3_3G034830' => 'csa', 'CsaV3_4G025090' => 'csa', 'CsaV3_5G018660' => 'csa', 'CsaV3_6G038160' => 'csa', 'CSS0003447' => 'camsi', 'CSS0017840' => 'camsi', 'CSS0019260' => 'camsi', 'CSS0040375' => 'camsi', 'CSS0042533' => 'camsi', 'DCAR_005960' => 'dca', 'DCAR_012104' => 'dca', 'DCAR_012105' => 'dca', 'DCAR_012293' => 'dca', 'DCAR_015632' => 'dca', 'DCAR_024602' => 'dca', 'DCAR_028752' => 'dca', 'Dinv06261' => 'din', 'Dinv13982' => 'din', 'Dinv17029' => 'din', 'Dinv18463' => 'din', 'Dinv33181' => 'din', 'Dinv35585' => 'din', 'Dinv37161' => 'din', 'Dinv42977' => 'din', 'Dinv43122' => 'din', 'Dinv44517' => 'din', 'Duzib093G0256' => 'dzi', 'Duzib106G1254' => 'dzi', 'Duzib128G1789' => 'dzi', 'Duzib133G0633' => 'dzi', 'Duzib138G0510' => 'dzi', 'Duzib150G1084' => 'dzi', 'Duzib168G0488' => 'dzi', 'Duzib168G1523' => 'dzi', 'Duzib170G0133' => 'dzi', 'ECA234G1433' => 'eca', 'ECA236G1432' => 'eca', 'ECA236G2256' => 'eca', 'ECA236G2365' => 'eca', 'ECA236G4830' => 'eca', 'ECA248G1505' => 'eca', 'EL10Ac3g06431' => 'bvu', 'EL10Ac5g12577' => 'bvu', 'EL10Ac6g13533' => 'bvu', 'EL10Ac7g16045' => 'bvu', 'Eucgr.A01281' => 'egr', 'Eucgr.B02326' => 'egr', 'Eucgr.H03532' => 'egr', 'Eucgr.K00553' => 'egr', 'Eucgr.K03116' => 'egr', 'FAN02G3963' => 'fan', 'FAN05G0438' => 'fan', 'FAN09G2434' => 'fan', 'FAN12G3984' => 'fan', 'FAN14G0798' => 'fan', 'FAN17G0652' => 'fan', 'FAN19G1988' => 'fan', 'FAN22G0632' => 'fan', 'FAN23G0387' => 'fan', 'FAN26G1323' => 'fan', 'FAN28G0666' => 'fan', 'FvH4_1g26080' => 'fve', 'FvH4_3g36780' => 'fve', 'FvH4_4g15270' => 'fve', 'FvH4_6g13490' => 'fve', 'Glyma.01G098700' => 'gma', 'Glyma.03G065900' => 'gma', 'Glyma.03G073754' => 'gma', 'Glyma.03G073758' => 'gma', 'Glyma.03G083200' => 'gma', 'Glyma.03G225500' => 'gma', 'Glyma.05G037766' => 'gma', 'Glyma.07G133500' => 'gma', 'Glyma.10G139400' => 'gma', 'Glyma.10G248900' => 'gma', 'Glyma.11G137800' => 'gma', 'Glyma.12G061300' => 'gma', 'Glyma.13G337900' => 'gma', 'Glyma.15G036600' => 'gma', 'Glyma.18G182800' => 'gma', 'Glyma.19G222500' => 'gma', 'Glyma.20G144800' => 'gma', 'Gohir.A01G222000' => 'ghi', 'Gohir.A03G044000' => 'ghi', 'Gohir.A03G044100' => 'ghi', 'Gohir.A04G083100' => 'ghi', 'Gohir.A07G127200' => 'ghi', 'Gohir.A07G132400' => 'ghi', 'Gohir.A08G000700' => 'ghi', 'Gohir.A11G327300' => 'ghi', 'Gohir.D01G211500' => 'ghi', 'Gohir.D03G123400' => 'ghi', 'Gohir.D03G123500' => 'ghi', 'Gohir.D04G121800' => 'ghi', 'Gohir.D07G131500' => 'ghi', 'Gohir.D07G136600' => 'ghi', 'Gohir.D08G011600' => 'ghi', 'Gohir.D11G346200' => 'ghi', 'Gorai.001G142800' => 'gra', 'Gorai.001G148700' => 'gra', 'Gorai.002G257300' => 'gra', 'Gorai.003G130000' => 'gra', 'Gorai.003G130100' => 'gra', 'Gorai.004G005300' => 'gra', 'Gorai.007G376500' => 'gra', 'Gorai.012G104700' => 'gra', 'GSVIVG01017946001' => 'vvi', 'GSVIVG01024928001' => 'vvi', 'GSVIVG01028227001' => 'vvi', 'GSVIVG01034151001' => 'vvi', 'HanXRQChr05g0135031' => 'han', 'HanXRQChr05g0135041' => 'han', 'HanXRQChr05g0140021' => 'han', 'HanXRQChr06g0178981' => 'han', 'HanXRQChr07g0188251' => 'han', 'HanXRQChr08g0235311' => 'han', 'HanXRQChr09g0271011' => 'han', 'HanXRQChr10g0293321' => 'han', 'HanXRQChr13g0388171' => 'han', 'Haze_00916' => 'cav', 'Haze_05063' => 'cav', 'Haze_20814' => 'cav', 'Haze_24128' => 'cav', 'Hma1.2p1_0745F.1_g212010' => 'hma', 'Hma1.2p1_0757F.1_g213260' => 'hma', 'Hma1.2p1_0936F.1_g238840' => 'hma', 'Hma1.2p1_1735F.1_g299890' => 'hma', 'Hma1.2p1_1861F.1_g305685' => 'hma', 'HPP92_003397' => 'vpl', 'HPP92_012597' => 'vpl', 'HPP92_015520' => 'vpl', 'HPP92_015539' => 'vpl', 'HPP92_020373' => 'vpl', 'Hund04938' => 'sun', 'Hund10677' => 'sun', 'Hund11033' => 'sun', 'Hund12155' => 'sun', 'Lalb_Chr01g0022551' => 'lal', 'Lalb_Chr03g0042341' => 'lal', 'Lalb_Chr07g0192931' => 'lal', 'Lalb_Chr12g0209551' => 'lal', 'Lalb_Chr19g0125251' => 'lal', 'Lalb_Chr19g0137891' => 'lal', 'Lalb_Chr21g0304641' => 'lal', 'Lalb_Chr21g0309881' => 'lal', 'Lj1A5T12' => 'lonja', 'Lj1C148G10' => 'lonja', 'Lj2A93T83' => 'lonja', 'Lj3A738G68' => 'lonja', 'Lj3C966T1' => 'lonja', 'Lj3g0018958' => 'lja', 'Lj3g0021831' => 'lja', 'Lj3g0025443' => 'lja', 'Lj4g0026809' => 'lja', 'Lj5g0012558' => 'lja', 'Lj5g0021586' => 'lja', 'Lsat_1_v5_gn_5_156840' => 'lsa', 'Lsat_1_v5_gn_8_73460' => 'lsa', 'Lsat_1_v5_gn_8_73481' => 'lsa', 'Lsat_1_v5_gn_9_31601' => 'lsa', 'Lsat_1_v5_gn_9_77320' => 'lsa', 'Manes.01G171300' => 'mes', 'Manes.01G171400' => 'mes', 'Manes.01G236100' => 'mes', 'Manes.02G130500' => 'mes', 'Manes.02G130600' => 'mes', 'Manes.03G180200' => 'mes', 'Manes.05G007000' => 'mes', 'Manes.08G084400' => 'mes', 'Manes.09G092600' => 'mes', 'Manes.15G027900' => 'mes', 'MBI04_g40948_MAGBIO' => 'mbi', 'MBI14_g12123_MAGBIO' => 'mbi', 'MBI18_g28915_MAGBIO' => 'mbi', 'MCO09G053' => 'mco', 'MCO11G782' => 'mco', 'MCO15G215' => 'mco', 'MD03G1088500' => 'mdo', 'MD03G1088600' => 'mdo', 'MD04G1130800' => 'mdo', 'MD09G1291700' => 'mdo', 'MD11G1097500' => 'mdo', 'MD11G1097600' => 'mdo', 'MD12G1143900' => 'mdo', 'MD13G1191400' => 'mdo', 'MD16G1191500' => 'mdo', 'Medtr1g085570' => 'mtr', 'Medtr1g104610' => 'mtr', 'Medtr2g097520' => 'mtr', 'Medtr4g021800' => 'mtr', 'Medtr4g021825' => 'mtr', 'Medtr4g064270' => 'mtr', 'Medtr4g064380' => 'mtr', 'Medtr7g062150' => 'mtr', 'MELO3C003138.2' => 'cme', 'MELO3C005187.2' => 'cme', 'MELO3C009252.2' => 'cme', 'MELO3C014481.2' => 'cme', 'MELO3C020616.2' => 'cme', 'MELO3C020617.2' => 'cme', 'MELO3C020618.2' => 'cme', 'Migut.G00328' => 'egut', 'Migut.J00320' => 'egut', 'Migut.L01000' => 'egut', 'Migut.L01953' => 'egut', 'MSTRG.10253' => 'ama', 'MSTRG.19077' => 'ama', 'MSTRG.26780' => 'ama', 'MSTRG.4023' => 'ama', 'MSTRG.5655' => 'ama', 'MSTRG.9992' => 'ama', 'Nitab4.5_0000043g0310' => 'nta', 'Nitab4.5_0000463g0080' => 'nta', 'Nitab4.5_0000705g0170' => 'nta', 'Nitab4.5_0001326g0060' => 'nta', 'Nitab4.5_0001628g0030' => 'nta', 'Nitab4.5_0002103g0110' => 'nta', 'Nitab4.5_0002946g0030' => 'nta', 'Nitab4.5_0004639g0030' => 'nta', 'Nn2g11149' => 'nnu', 'Nn2g13389' => 'nnu', 'Nn4g25326' => 'nnu', 'Nn4g26290' => 'nnu', 'Nn5g29865' => 'nnu', 'Oeu004163.1' => 'oeu', 'Oeu006901.1' => 'oeu', 'Oeu010096.1' => 'oeu', 'Oeu024340.1' => 'oeu', 'Oeu048369.1' => 'oeu', 'Os01g0973000' => 'osa', 'Os03g0273800' => 'osa', 'Os03g0701200' => 'osa', 'Os03g0834050' => 'osa', 'Os07g0634400' => 'osa', 'Peaxi162Scf00092g01414' => 'pax', 'Peaxi162Scf00165g00818' => 'pax', 'Peaxi162Scf00309g00516' => 'pax', 'Peaxi162Scf00774g00218' => 'pax', 'PGR004G1824' => 'pgr', 'PGR004G2606' => 'pgr', 'PGR031G2716' => 'pgr', 'PGR102G2460' => 'pgr', 'PGR142G2599' => 'pgr', 'PGSC0003DMG400000843' => 'stu', 'PGSC0003DMG400008829' => 'stu', 'PGSC0003DMG400030418' => 'stu', 'PGSC0003DMG400031834' => 'stu', 'PGSC0003DMG401028300' => 'stu', 'PGSC0003DMG402028300' => 'stu', 'Phvul.001G219300' => 'pvu', 'Phvul.007G056000' => 'pvu', 'Phvul.007G208000' => 'pvu', 'Phvul.008G119500' => 'pvu', 'Phvul.010G011200' => 'pvu', 'Phvul.010G014800' => 'pvu', 'Phvul.011G062900' => 'pvu', 'Phvul.L007043' => 'pvu', 'Potri.001G242300' => 'ptr', 'Potri.002G185300' => 'ptr', 'Potri.006G086900' => 'ptr', 'Potri.008G151700' => 'ptr', 'Potri.009G033500' => 'ptr', 'Potri.010G089300' => 'ptr', 'Potri.014G110800' => 'ptr', 'Pp3c27_8130' => 'ppa', 'Pp3c6_27410' => 'ppa', 'PRCOL_00001659' => 'pco', 'PRCOL_00001927' => 'pco', 'PRCOL_00003649' => 'pco', 'Prupe.1G011600' => 'ppe', 'Prupe.3G000800' => 'ppe', 'Prupe.3G001100' => 'ppe', 'Prupe.6G072700' => 'ppe', 'Prupe.6G072800' => 'ppe', 'Prupe.6G257300' => 'ppe', 'Prupe.8G033000' => 'ppe', 'Psat0s2633g0080' => 'psa', 'Psat0s3396g0080' => 'psa', 'Psat0s3396g0200' => 'psa', 'Psat3g139080' => 'psa', 'Psat5g285080' => 'psa', 'Psat6g157760' => 'psa', 'Psat6g208440' => 'psa', 'Psat7g215320' => 'psa', 'Psat7g215400' => 'psa', 'Psat7g235600' => 'psa', 'Psat7g235760' => 'psa', 'PSO063G4603' => 'pso', 'PSO210G0182' => 'pso', 'PSO210G0196' => 'pso', 'PSO339G0394' => 'pso', 'PSO339G4127' => 'pso', 'PSO513G0064' => 'pso', 'PSO761G0079' => 'pso', 'QL01p031003' => 'qlo', 'QL01p031078' => 'qlo', 'QL06p003004' => 'qlo', 'QL07p048731' => 'qlo', 'QL09p037427' => 'qlo', 'RcHm_v2.0_Chr3g0466361' => 'rch', 'RcHm_v2.0_Chr3g0485571' => 'rch', 'RcHm_v2.0_Chr4g0416551' => 'rch', 'RcHm_v2.0_Chr5g0065831' => 'rch', 'Rhsim01G0230500' => 'rsi', 'Rhsim05G0194000' => 'rsi', 'Rhsim08G0250400' => 'rsi', 'Sabra02G0131000' => 'sbr', 'Sabra06G0066300' => 'sbr', 'Sabra08G0115500' => 'sbr', 'Sabra09G0023900' => 'sbr', 'Sabra10G0054000' => 'sbr', 'Sabra14G0081500' => 'sbr', 'Sabra16G0147100' => 'sbr', 'SalBow2G2957' => 'sbo', 'SalBow4G3320' => 'sbo', 'SalBow8G1894' => 'sbo', 'Sc07g0007950' => 'sci', 'Sc12g0001360' => 'sci', 'Sc13g0004330' => 'sci', 'Sc20g0005010' => 'sci', 'Sed0000361' => 'sed', 'Sed0001706' => 'sed', 'Sed0002422' => 'sed', 'Sed0004029' => 'sed', 'Sed0004602' => 'sed', 'Sed0004943' => 'sed', 'Sed0008646' => 'sed', 'Sed0023313' => 'sed', 'Sed0024843' => 'sed', 'SEGI_00081' => 'sgi', 'SEGI_00947' => 'sgi', 'SEGI_04046' => 'sgi', 'SEGI_06880' => 'sgi', 'SEGI_09736' => 'sgi', 'SEGI_12741' => 'sgi', 'SEGI_14530' => 'sgi', 'SEGI_20705' => 'sgi', 'SEGI_26088' => 'sgi', 'SEGI_28323' => 'sgi', 'SEGI_33343' => 'sgi', 'SGA_v2.0_scaffold126G33775' => 'sas', 'SGA_v2.0_scaffold2G01337' => 'sas', 'SGA_v2.0_scaffold38G15006' => 'sas', 'SGA_v2.0_scaffold39G15264' => 'sas', 'SGA_v2.0_scaffold453G51880' => 'sas', 'SHI12696' => 'shi', 'SMO367G1096' => 'smo', 'Solyc01g068630.3' => 'sly', 'Solyc05g011880.3' => 'sly', 'Solyc06g076300.3' => 'sly', 'Solyc09g010940.4' => 'sly', 'Solyc09g075890.3' => 'sly', 'Sopen01g030560' => 'spe', 'Sopen05g006630' => 'spe', 'Sopen06g032720' => 'spe', 'Sopen09g005660' => 'spe', 'Sopen09g030690' => 'spe', 'Sp4g14540' => 'spa', 'Sp4g20030' => 'spa', 'Sp5g01320' => 'spa', 'Sp6g21170' => 'spa', 'Sp6g21180' => 'spa', 'Sp6g21190' => 'spa', 'Sp6g40220' => 'spa', 'TAR362G0122' => 'tar', 'TAR362G1338' => 'tar', 'TAR369G0590' => 'tar', 'TAR371G0824' => 'tar', 'TAR622G1429' => 'tar', 'TAR623G0734' => 'tar', 'TAR625G0441' => 'tar', 'TAR629G0976' => 'tar', 'TAR633G1195' => 'tar', 'TAR636G2660' => 'tar', 'THA.LOC104799440' => 'tha', 'THA.LOC104800966' => 'tha', 'THA.LOC104806559' => 'tha', 'THA.LOC104810765' => 'tha', 'THA.LOC104816266' => 'tha', 'THA.LOC104817419' => 'tha', 'THA.LOC104827021' => 'tha', 'Thecc.01G327400' => 'tca', 'Thecc.04G229200' => 'tca', 'Thecc.05G037400' => 'tca', 'Thecc.09G318600' => 'tca', 'Thecc.09G318700' => 'tca', 'Thhalv10006238m.g' => 'esa', 'Thhalv10014321m.g' => 'esa', 'Thhalv10014335m.g' => 'esa', 'Thhalv10015826m.g' => 'esa', 'Thhalv10017107m.g' => 'esa', 'Thhalv10017180m.g' => 'esa', 'Thhalv10029339m.g' => 'esa', 'TPR.G1699' => 'tpr', 'TPR.G23609' => 'tpr', 'TPR.G3081' => 'tpr', 'TPR.G40397' => 'tpr', 'TPR.G5522' => 'tpr', 'TPR.G5618' => 'tpr', 'TPR.G5626' => 'tpr', 'TWI09G1632' => 'twi', 'TWI23G1230' => 'twi', 'TWI53G1064' => 'twi', 'TWI59G0751' => 'twi', 'TWI74G0947' => 'twi', 'TWI77G0337' => 'twi', 'TWI79G1254' => 'twi', 'unitig_0.g2341' => 'ugi', 'unitig_26.g10006' => 'ugi', 'unitig_26.g10008' => 'ugi', 'unitig_26.g9192' => 'ugi', 'vmacro14547' => 'vma', 'vmacro15333' => 'vma', 'vmacro18743' => 'vma', 'vmacro20166' => 'vma', 'VMungo0331G0523' => 'vmu', 'VMungo0331G1202' => 'vmu', 'VMungo0720G1228' => 'vmu', 'VMungo0720G1514' => 'vmu', 'VMungo1080G0169' => 'vmu', 'VMungo1127G1475' => 'vmu', 'VMungo1383G1208' => 'vmu', 'VMungo1383G1698' => 'vmu', 'Zm00001eb012270' => 'zma', 'Zm00001eb054100' => 'zma', 'Zm00001eb063350' => 'zma', 'Zm00001eb328560' => 'zma', 'Zm00001eb342820' => 'zma', 'Zm00001eb362210' => 'zma', 'Zm00001eb397730' => 'zma', 'Zm00001eb399750' => 'zma' ), 'gf_id' => 'HOM05D000959', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000959' ), 'data_identifier' => 'HOM05D000959', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000959', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '622', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p07100' => 'bna', 'A03p11720' => 'bna', 'A05p08300' => 'bna', 'A05p13380' => 'bna', 'A09p54130' => 'bna', 'A10p16690' => 'bna', 'A10p16700' => 'bna', 'A10p33390' => 'bna', 'Aa31LG10G16020' => 'aar', 'Aa31LG1G11810' => 'aar', 'Aa31LG1G11830' => 'aar', 'Aa31LG1G22510' => 'aar', 'Aa31LG5G4890' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5793' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2310' => 'aag', 'Actinidia08499' => 'ach', 'Actinidia11262' => 'ach', 'Actinidia23926' => 'ach', 'Actinidia34420' => 'ach', 'Actinidia36970' => 'ach', 'Ah.02g111220' => 'amhyb', 'Ah.15g097750' => 'amhyb', 'AL4G27500' => 'aly', 'AL6G11470' => 'aly', 'AL8G35950' => 'aly', 'AL8G35960' => 'aly', 'AL8G35970' => 'aly', 'Aqoxy1G00912' => 'aox', 'Aqoxy2G02253' => 'aox', 'Aqoxy2G02411' => 'aox', 'Aqoxy5G00485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BZ66YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K8ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM4FUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6BF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HFV7XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25JBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0YNNV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MAKK6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P70IT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP2Z6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V61LZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YWP64R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3S9AI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7PGHH' => 'arhy', 'AT2G32150' => 'ath', 'AT3G62040' => 'ath', 'AT5G02230' => 'ath', 'AT5G59480' => 'ath', 'AT5G59490' => 'ath', 'ATR0332G060' => 'atr', 'ATR0559G190' => 'atr', 'ATR0693G294' => 'atr', 'Atru.chr3.3975' => 'acertr', 'Atru.chr3.3976' => 'acertr', 'Atru.chr3.3977' => 'acertr', 'Atru.chr4.2498' => 'acertr', 'Atru.chr5.838' => 'acertr', 'Atru.chr8.1990' => 'acertr', 'Atru.chr8.1991' => 'acertr', 'Atru.chr8.1992' => 'acertr', 'AUR62001759' => 'cqu', 'AUR62009545' => 'cqu', 'AUR62010474' => 'cqu', 'AUR62025820' => 'cqu', 'AUR62030422' => 'cqu', 'AUR62033605' => 'cqu', 'AUR62038615' => 'cqu', 'AUR62041347' => 'cqu', 'BcaB01g04574' => 'bca', 'BcaB02g09263' => 'bca', 'BcaB02g10453' => 'bca', 'BcaB05g22513' => 'bca', 'BcaB08g36253' => 'bca', 'BcaB08g36254' => 'bca', 'BcaC01g06519' => 'bca', 'BcaC02g11889' => 'bca', 'BcaC03g14010' => 'bca', 'BcaC03g18439' => 'bca', 'BcaC04g19765' => 'bca', 'BcaC09g48432' => 'bca', 'BcaNung07302' => 'bca', 'BolC2t06040H' => 'bol', 'BolC2t07346H' => 'bol', 'BolC3t13817H' => 'bol', 'BolC4t22625H' => 'bol', 'BolC4t23297H' => 'bol', 'BolC8t51278H' => 'bol', 'BolC9t58050H' => 'bol', 'BolC9t58051H' => 'bol', 'BolC9t60163H' => 'bol', 'BraA02t04712Z' => 'bra', 'BraA02t05791Z' => 'bra', 'BraA03t10483Z' => 'bra', 'BraA05t19795Z' => 'bra', 'BraA05t20276Z' => 'bra', 'BraA09t40827Z' => 'bra', 'BraA10t43750Z' => 'bra', 'BraA10t43751Z' => 'bra', 'BraA10t45370Z' => 'bra', 'C02p00400' => 'bna', 'C02p12460' => 'bna', 'C03p13680' => 'bna', 'C04p10270' => 'bna', 'C04p17500' => 'bna', 'C08p37010' => 'bna', 'C09p51880' => 'bna', 'C09p51890' => 'bna', 'C09p74300' => 'bna', 'CAN.G179.26' => 'can', 'CAN.G3384.1' => 'can', 'CAN.G394.68' => 'can', 'CAN.G907.13' => 'can', 'CANSAT11G0012' => 'cansat', 'CANSAT25G1586' => 'cansat', 'CANSAT35G0735' => 'cansat', 'CANSAT54G0556' => 'cansat', 'CANSAT64G0356' => 'cansat', 'CANSAT78G2042' => 'cansat', 'CARHR125920' => 'chi', 'CARHR131910' => 'chi', 'CARHR172390' => 'chi', 'CARHR211140' => 'chi', 'CARHR285850' => 'chi', 'CARHR285860' => 'chi', 'Carub.0004s1347' => 'cru', 'Carub.0004s1960' => 'cru', 'Carub.0005s2880' => 'cru', 'Carub.0006s0107' => 'cru', 'Carub.0008s2015' => 'cru', 'Carub.0008s2016' => 'cru', 'Carub.0008s2017' => 'cru', 'Ca_01315_v3' => 'car', 'Ca_05063_v3' => 'car', 'Ca_10231_v3' => 'car', 'Ca_10913_v3' => 'car', 'Ca_19156_v3' => 'car', 'Ca_23644_v3' => 'car', 'Ca_26735_v3' => 'car', 'Cc01_g13130' => 'ccan', 'Cc02_g21690' => 'ccan', 'Cc03_g03600' => 'ccan', 'Cc06_g02510' => 'ccan', 'CDE02G1265' => 'cde', 'CDE05G0415' => 'cde', 'CDE08G1082' => 'cde', 'Cfa005780' => 'cfa', 'Cfa011522' => 'cfa', 'Cfa011523' => 'cfa', 'Cfa015627' => 'cfa', 'Cfa017359' => 'cfa', 'Ciclev10005687m.g' => 'ccl', 'Ciclev10012173m.g' => 'ccl', 'Ciclev10021621m.g' => 'ccl', 'Ciclev10028968m.g' => 'ccl', 'Ciclev10029907m.g' => 'ccl', 'CiPaw.01G164800' => 'cil', 'CiPaw.07G083700' => 'cil', 'CiPaw.07G127000' => 'cil', 'CiPaw.07G136900' => 'cil', 'CiPaw.08G081700' => 'cil', 'CiPaw.09G194600' => 'cil', 'CiPaw.10G146500' => 'cil', 'CiPaw.13G091500' => 'cil', 'CiPaw.13G091600' => 'cil', 'ClCG00G003390' => 'cla', 'ClCG01G007220' => 'cla', 'ClCG03G001370' => 'cla', 'ClCG04G008100' => 'cla', 'ClCG06G006110' => 'cla', 'ClCG06G006130' => 'cla', 'ClCG10G021210' => 'cla', 'COL.COLO4_07648' => 'col', 'COL.COLO4_07650' => 'col', 'COL.COLO4_07651' => 'col', 'COL.COLO4_14780' => 'col', 'COL.COLO4_18546' => 'col', 'COL.COLO4_18547' => 'col', 'COL.COLO4_23103' => 'col', 'COL.COLO4_30419' => 'col', 'COL.COLO4_34232' => 'col', 'Cpa.g.sc169.20' => 'cpa', 'Cpa.g.sc57.45' => 'cpa', 'Cpa.g.sc58.124' => 'cpa', 'Cpa.g.sc58.125' => 'cpa', 'Cpa.g.sc81.118' => 'cpa', 'Cpa.g.sc81.119' => 'cpa', 'Cre12.g524700' => 'cre', 'CsaV3_1G034430' => 'csa', 'CsaV3_1G034440' => 'csa', 'CsaV3_1G034450' => 'csa', 'CsaV3_3G034830' => 'csa', 'CsaV3_4G025090' => 'csa', 'CsaV3_5G018660' => 'csa', 'CsaV3_6G038160' => 'csa', 'CSS0003447' => 'camsi', 'CSS0017840' => 'camsi', 'CSS0019260' => 'camsi', 'CSS0040375' => 'camsi', 'CSS0042533' => 'camsi', 'DCAR_005960' => 'dca', 'DCAR_012104' => 'dca', 'DCAR_012105' => 'dca', 'DCAR_012293' => 'dca', 'DCAR_015632' => 'dca', 'DCAR_024602' => 'dca', 'DCAR_028752' => 'dca', 'Dinv06261' => 'din', 'Dinv13982' => 'din', 'Dinv17029' => 'din', 'Dinv18463' => 'din', 'Dinv33181' => 'din', 'Dinv35585' => 'din', 'Dinv37161' => 'din', 'Dinv42977' => 'din', 'Dinv43122' => 'din', 'Dinv44517' => 'din', 'Duzib093G0256' => 'dzi', 'Duzib106G1254' => 'dzi', 'Duzib128G1789' => 'dzi', 'Duzib133G0633' => 'dzi', 'Duzib138G0510' => 'dzi', 'Duzib150G1084' => 'dzi', 'Duzib168G0488' => 'dzi', 'Duzib168G1523' => 'dzi', 'Duzib170G0133' => 'dzi', 'ECA234G1433' => 'eca', 'ECA236G1432' => 'eca', 'ECA236G2256' => 'eca', 'ECA236G2365' => 'eca', 'ECA236G4830' => 'eca', 'ECA248G1505' => 'eca', 'EL10Ac3g06431' => 'bvu', 'EL10Ac5g12577' => 'bvu', 'EL10Ac6g13533' => 'bvu', 'EL10Ac7g16045' => 'bvu', 'Eucgr.A01281' => 'egr', 'Eucgr.B02326' => 'egr', 'Eucgr.H03532' => 'egr', 'Eucgr.K00553' => 'egr', 'Eucgr.K03116' => 'egr', 'FAN02G3963' => 'fan', 'FAN05G0438' => 'fan', 'FAN09G2434' => 'fan', 'FAN12G3984' => 'fan', 'FAN14G0798' => 'fan', 'FAN17G0652' => 'fan', 'FAN19G1988' => 'fan', 'FAN22G0632' => 'fan', 'FAN23G0387' => 'fan', 'FAN26G1323' => 'fan', 'FAN28G0666' => 'fan', 'FvH4_1g26080' => 'fve', 'FvH4_3g36780' => 'fve', 'FvH4_4g15270' => 'fve', 'FvH4_6g13490' => 'fve', 'Glyma.01G098700' => 'gma', 'Glyma.03G065900' => 'gma', 'Glyma.03G073754' => 'gma', 'Glyma.03G073758' => 'gma', 'Glyma.03G083200' => 'gma', 'Glyma.03G225500' => 'gma', 'Glyma.05G037766' => 'gma', 'Glyma.07G133500' => 'gma', 'Glyma.10G139400' => 'gma', 'Glyma.10G248900' => 'gma', 'Glyma.11G137800' => 'gma', 'Glyma.12G061300' => 'gma', 'Glyma.13G337900' => 'gma', 'Glyma.15G036600' => 'gma', 'Glyma.18G182800' => 'gma', 'Glyma.19G222500' => 'gma', 'Glyma.20G144800' => 'gma', 'Gohir.A01G222000' => 'ghi', 'Gohir.A03G044000' => 'ghi', 'Gohir.A03G044100' => 'ghi', 'Gohir.A04G083100' => 'ghi', 'Gohir.A07G127200' => 'ghi', 'Gohir.A07G132400' => 'ghi', 'Gohir.A08G000700' => 'ghi', 'Gohir.A11G327300' => 'ghi', 'Gohir.D01G211500' => 'ghi', 'Gohir.D03G123400' => 'ghi', 'Gohir.D03G123500' => 'ghi', 'Gohir.D04G121800' => 'ghi', 'Gohir.D07G131500' => 'ghi', 'Gohir.D07G136600' => 'ghi', 'Gohir.D08G011600' => 'ghi', 'Gohir.D11G346200' => 'ghi', 'Gorai.001G142800' => 'gra', 'Gorai.001G148700' => 'gra', 'Gorai.002G257300' => 'gra', 'Gorai.003G130000' => 'gra', 'Gorai.003G130100' => 'gra', 'Gorai.004G005300' => 'gra', 'Gorai.007G376500' => 'gra', 'Gorai.012G104700' => 'gra', 'GSVIVG01017946001' => 'vvi', 'GSVIVG01024928001' => 'vvi', 'GSVIVG01028227001' => 'vvi', 'GSVIVG01034151001' => 'vvi', 'HanXRQChr05g0135031' => 'han', 'HanXRQChr05g0135041' => 'han', 'HanXRQChr05g0140021' => 'han', 'HanXRQChr06g0178981' => 'han', 'HanXRQChr07g0188251' => 'han', 'HanXRQChr08g0235311' => 'han', 'HanXRQChr09g0271011' => 'han', 'HanXRQChr10g0293321' => 'han', 'HanXRQChr13g0388171' => 'han', 'Haze_00916' => 'cav', 'Haze_05063' => 'cav', 'Haze_20814' => 'cav', 'Haze_24128' => 'cav', 'Hma1.2p1_0745F.1_g212010' => 'hma', 'Hma1.2p1_0757F.1_g213260' => 'hma', 'Hma1.2p1_0936F.1_g238840' => 'hma', 'Hma1.2p1_1735F.1_g299890' => 'hma', 'Hma1.2p1_1861F.1_g305685' => 'hma', 'HPP92_003397' => 'vpl', 'HPP92_012597' => 'vpl', 'HPP92_015520' => 'vpl', 'HPP92_015539' => 'vpl', 'HPP92_020373' => 'vpl', 'Hund04938' => 'sun', 'Hund10677' => 'sun', 'Hund11033' => 'sun', 'Hund12155' => 'sun', 'Lalb_Chr01g0022551' => 'lal', 'Lalb_Chr03g0042341' => 'lal', 'Lalb_Chr07g0192931' => 'lal', 'Lalb_Chr12g0209551' => 'lal', 'Lalb_Chr19g0125251' => 'lal', 'Lalb_Chr19g0137891' => 'lal', 'Lalb_Chr21g0304641' => 'lal', 'Lalb_Chr21g0309881' => 'lal', 'Lj1A5T12' => 'lonja', 'Lj1C148G10' => 'lonja', 'Lj2A93T83' => 'lonja', 'Lj3A738G68' => 'lonja', 'Lj3C966T1' => 'lonja', 'Lj3g0018958' => 'lja', 'Lj3g0021831' => 'lja', 'Lj3g0025443' => 'lja', 'Lj4g0026809' => 'lja', 'Lj5g0012558' => 'lja', 'Lj5g0021586' => 'lja', 'Lsat_1_v5_gn_5_156840' => 'lsa', 'Lsat_1_v5_gn_8_73460' => 'lsa', 'Lsat_1_v5_gn_8_73481' => 'lsa', 'Lsat_1_v5_gn_9_31601' => 'lsa', 'Lsat_1_v5_gn_9_77320' => 'lsa', 'Manes.01G171300' => 'mes', 'Manes.01G171400' => 'mes', 'Manes.01G236100' => 'mes', 'Manes.02G130500' => 'mes', 'Manes.02G130600' => 'mes', 'Manes.03G180200' => 'mes', 'Manes.05G007000' => 'mes', 'Manes.08G084400' => 'mes', 'Manes.09G092600' => 'mes', 'Manes.15G027900' => 'mes', 'MBI04_g40948_MAGBIO' => 'mbi', 'MBI14_g12123_MAGBIO' => 'mbi', 'MBI18_g28915_MAGBIO' => 'mbi', 'MCO09G053' => 'mco', 'MCO11G782' => 'mco', 'MCO15G215' => 'mco', 'MD03G1088500' => 'mdo', 'MD03G1088600' => 'mdo', 'MD04G1130800' => 'mdo', 'MD09G1291700' => 'mdo', 'MD11G1097500' => 'mdo', 'MD11G1097600' => 'mdo', 'MD12G1143900' => 'mdo', 'MD13G1191400' => 'mdo', 'MD16G1191500' => 'mdo', 'Medtr1g085570' => 'mtr', 'Medtr1g104610' => 'mtr', 'Medtr2g097520' => 'mtr', 'Medtr4g021800' => 'mtr', 'Medtr4g021825' => 'mtr', 'Medtr4g064270' => 'mtr', 'Medtr4g064380' => 'mtr', 'Medtr7g062150' => 'mtr', 'MELO3C003138.2' => 'cme', 'MELO3C005187.2' => 'cme', 'MELO3C009252.2' => 'cme', 'MELO3C014481.2' => 'cme', 'MELO3C020616.2' => 'cme', 'MELO3C020617.2' => 'cme', 'MELO3C020618.2' => 'cme', 'Migut.G00328' => 'egut', 'Migut.J00320' => 'egut', 'Migut.L01000' => 'egut', 'Migut.L01953' => 'egut', 'MSTRG.10253' => 'ama', 'MSTRG.19077' => 'ama', 'MSTRG.26780' => 'ama', 'MSTRG.4023' => 'ama', 'MSTRG.5655' => 'ama', 'MSTRG.9992' => 'ama', 'Nitab4.5_0000043g0310' => 'nta', 'Nitab4.5_0000463g0080' => 'nta', 'Nitab4.5_0000705g0170' => 'nta', 'Nitab4.5_0001326g0060' => 'nta', 'Nitab4.5_0001628g0030' => 'nta', 'Nitab4.5_0002103g0110' => 'nta', 'Nitab4.5_0002946g0030' => 'nta', 'Nitab4.5_0004639g0030' => 'nta', 'Nn2g11149' => 'nnu', 'Nn2g13389' => 'nnu', 'Nn4g25326' => 'nnu', 'Nn4g26290' => 'nnu', 'Nn5g29865' => 'nnu', 'Oeu004163.1' => 'oeu', 'Oeu006901.1' => 'oeu', 'Oeu010096.1' => 'oeu', 'Oeu024340.1' => 'oeu', 'Oeu048369.1' => 'oeu', 'Os01g0973000' => 'osa', 'Os03g0273800' => 'osa', 'Os03g0701200' => 'osa', 'Os03g0834050' => 'osa', 'Os07g0634400' => 'osa', 'Peaxi162Scf00092g01414' => 'pax', 'Peaxi162Scf00165g00818' => 'pax', 'Peaxi162Scf00309g00516' => 'pax', 'Peaxi162Scf00774g00218' => 'pax', 'PGR004G1824' => 'pgr', 'PGR004G2606' => 'pgr', 'PGR031G2716' => 'pgr', 'PGR102G2460' => 'pgr', 'PGR142G2599' => 'pgr', 'PGSC0003DMG400000843' => 'stu', 'PGSC0003DMG400008829' => 'stu', 'PGSC0003DMG400030418' => 'stu', 'PGSC0003DMG400031834' => 'stu', 'PGSC0003DMG401028300' => 'stu', 'PGSC0003DMG402028300' => 'stu', 'Phvul.001G219300' => 'pvu', 'Phvul.007G056000' => 'pvu', 'Phvul.007G208000' => 'pvu', 'Phvul.008G119500' => 'pvu', 'Phvul.010G011200' => 'pvu', 'Phvul.010G014800' => 'pvu', 'Phvul.011G062900' => 'pvu', 'Phvul.L007043' => 'pvu', 'Potri.001G242300' => 'ptr', 'Potri.002G185300' => 'ptr', 'Potri.006G086900' => 'ptr', 'Potri.008G151700' => 'ptr', 'Potri.009G033500' => 'ptr', 'Potri.010G089300' => 'ptr', 'Potri.014G110800' => 'ptr', 'Pp3c27_8130' => 'ppa', 'Pp3c6_27410' => 'ppa', 'PRCOL_00001659' => 'pco', 'PRCOL_00001927' => 'pco', 'PRCOL_00003649' => 'pco', 'Prupe.1G011600' => 'ppe', 'Prupe.3G000800' => 'ppe', 'Prupe.3G001100' => 'ppe', 'Prupe.6G072700' => 'ppe', 'Prupe.6G072800' => 'ppe', 'Prupe.6G257300' => 'ppe', 'Prupe.8G033000' => 'ppe', 'Psat0s2633g0080' => 'psa', 'Psat0s3396g0080' => 'psa', 'Psat0s3396g0200' => 'psa', 'Psat3g139080' => 'psa', 'Psat5g285080' => 'psa', 'Psat6g157760' => 'psa', 'Psat6g208440' => 'psa', 'Psat7g215320' => 'psa', 'Psat7g215400' => 'psa', 'Psat7g235600' => 'psa', 'Psat7g235760' => 'psa', 'PSO063G4603' => 'pso', 'PSO210G0182' => 'pso', 'PSO210G0196' => 'pso', 'PSO339G0394' => 'pso', 'PSO339G4127' => 'pso', 'PSO513G0064' => 'pso', 'PSO761G0079' => 'pso', 'QL01p031003' => 'qlo', 'QL01p031078' => 'qlo', 'QL06p003004' => 'qlo', 'QL07p048731' => 'qlo', 'QL09p037427' => 'qlo', 'RcHm_v2.0_Chr3g0466361' => 'rch', 'RcHm_v2.0_Chr3g0485571' => 'rch', 'RcHm_v2.0_Chr4g0416551' => 'rch', 'RcHm_v2.0_Chr5g0065831' => 'rch', 'Rhsim01G0230500' => 'rsi', 'Rhsim05G0194000' => 'rsi', 'Rhsim08G0250400' => 'rsi', 'Sabra02G0131000' => 'sbr', 'Sabra06G0066300' => 'sbr', 'Sabra08G0115500' => 'sbr', 'Sabra09G0023900' => 'sbr', 'Sabra10G0054000' => 'sbr', 'Sabra14G0081500' => 'sbr', 'Sabra16G0147100' => 'sbr', 'SalBow2G2957' => 'sbo', 'SalBow4G3320' => 'sbo', 'SalBow8G1894' => 'sbo', 'Sc07g0007950' => 'sci', 'Sc12g0001360' => 'sci', 'Sc13g0004330' => 'sci', 'Sc20g0005010' => 'sci', 'Sed0000361' => 'sed', 'Sed0001706' => 'sed', 'Sed0002422' => 'sed', 'Sed0004029' => 'sed', 'Sed0004602' => 'sed', 'Sed0004943' => 'sed', 'Sed0008646' => 'sed', 'Sed0023313' => 'sed', 'Sed0024843' => 'sed', 'SEGI_00081' => 'sgi', 'SEGI_00947' => 'sgi', 'SEGI_04046' => 'sgi', 'SEGI_06880' => 'sgi', 'SEGI_09736' => 'sgi', 'SEGI_12741' => 'sgi', 'SEGI_14530' => 'sgi', 'SEGI_20705' => 'sgi', 'SEGI_26088' => 'sgi', 'SEGI_28323' => 'sgi', 'SEGI_33343' => 'sgi', 'SGA_v2.0_scaffold126G33775' => 'sas', 'SGA_v2.0_scaffold2G01337' => 'sas', 'SGA_v2.0_scaffold38G15006' => 'sas', 'SGA_v2.0_scaffold39G15264' => 'sas', 'SGA_v2.0_scaffold453G51880' => 'sas', 'SHI12696' => 'shi', 'SMO367G1096' => 'smo', 'Solyc01g068630.3' => 'sly', 'Solyc05g011880.3' => 'sly', 'Solyc06g076300.3' => 'sly', 'Solyc09g010940.4' => 'sly', 'Solyc09g075890.3' => 'sly', 'Sopen01g030560' => 'spe', 'Sopen05g006630' => 'spe', 'Sopen06g032720' => 'spe', 'Sopen09g005660' => 'spe', 'Sopen09g030690' => 'spe', 'Sp4g14540' => 'spa', 'Sp4g20030' => 'spa', 'Sp5g01320' => 'spa', 'Sp6g21170' => 'spa', 'Sp6g21180' => 'spa', 'Sp6g21190' => 'spa', 'Sp6g40220' => 'spa', 'TAR362G0122' => 'tar', 'TAR362G1338' => 'tar', 'TAR369G0590' => 'tar', 'TAR371G0824' => 'tar', 'TAR622G1429' => 'tar', 'TAR623G0734' => 'tar', 'TAR625G0441' => 'tar', 'TAR629G0976' => 'tar', 'TAR633G1195' => 'tar', 'TAR636G2660' => 'tar', 'THA.LOC104799440' => 'tha', 'THA.LOC104800966' => 'tha', 'THA.LOC104806559' => 'tha', 'THA.LOC104810765' => 'tha', 'THA.LOC104816266' => 'tha', 'THA.LOC104817419' => 'tha', 'THA.LOC104827021' => 'tha', 'Thecc.01G327400' => 'tca', 'Thecc.04G229200' => 'tca', 'Thecc.05G037400' => 'tca', 'Thecc.09G318600' => 'tca', 'Thecc.09G318700' => 'tca', 'Thhalv10006238m.g' => 'esa', 'Thhalv10014321m.g' => 'esa', 'Thhalv10014335m.g' => 'esa', 'Thhalv10015826m.g' => 'esa', 'Thhalv10017107m.g' => 'esa', 'Thhalv10017180m.g' => 'esa', 'Thhalv10029339m.g' => 'esa', 'TPR.G1699' => 'tpr', 'TPR.G23609' => 'tpr', 'TPR.G3081' => 'tpr', 'TPR.G40397' => 'tpr', 'TPR.G5522' => 'tpr', 'TPR.G5618' => 'tpr', 'TPR.G5626' => 'tpr', 'TWI09G1632' => 'twi', 'TWI23G1230' => 'twi', 'TWI53G1064' => 'twi', 'TWI59G0751' => 'twi', 'TWI74G0947' => 'twi', 'TWI77G0337' => 'twi', 'TWI79G1254' => 'twi', 'unitig_0.g2341' => 'ugi', 'unitig_26.g10006' => 'ugi', 'unitig_26.g10008' => 'ugi', 'unitig_26.g9192' => 'ugi', 'vmacro14547' => 'vma', 'vmacro15333' => 'vma', 'vmacro18743' => 'vma', 'vmacro20166' => 'vma', 'VMungo0331G0523' => 'vmu', 'VMungo0331G1202' => 'vmu', 'VMungo0720G1228' => 'vmu', 'VMungo0720G1514' => 'vmu', 'VMungo1080G0169' => 'vmu', 'VMungo1127G1475' => 'vmu', 'VMungo1383G1208' => 'vmu', 'VMungo1383G1698' => 'vmu', 'Zm00001eb012270' => 'zma', 'Zm00001eb054100' => 'zma', 'Zm00001eb063350' => 'zma', 'Zm00001eb328560' => 'zma', 'Zm00001eb342820' => 'zma', 'Zm00001eb362210' => 'zma', 'Zm00001eb397730' => 'zma', 'Zm00001eb399750' => 'zma' ) $gf_id = 'HOM05D000959' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000959' ) $data_identifier = 'HOM05D000959' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 5, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 5, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 10, 'mbi' => (int) 3, 'mco' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 2, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 3, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 11, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399750' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000959', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '622', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p07100' => 'bna', 'A03p11720' => 'bna', 'A05p08300' => 'bna', 'A05p13380' => 'bna', 'A09p54130' => 'bna', 'A10p16690' => 'bna', 'A10p16700' => 'bna', 'A10p33390' => 'bna', 'Aa31LG10G16020' => 'aar', 'Aa31LG1G11810' => 'aar', 'Aa31LG1G11830' => 'aar', 'Aa31LG1G22510' => 'aar', 'Aa31LG5G4890' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5793' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2310' => 'aag', 'Actinidia08499' => 'ach', 'Actinidia11262' => 'ach', 'Actinidia23926' => 'ach', 'Actinidia34420' => 'ach', 'Actinidia36970' => 'ach', 'Ah.02g111220' => 'amhyb', 'Ah.15g097750' => 'amhyb', 'AL4G27500' => 'aly', 'AL6G11470' => 'aly', 'AL8G35950' => 'aly', 'AL8G35960' => 'aly', 'AL8G35970' => 'aly', 'Aqoxy1G00912' => 'aox', 'Aqoxy2G02253' => 'aox', 'Aqoxy2G02411' => 'aox', 'Aqoxy5G00485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BZ66YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K8ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM4FUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6BF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HFV7XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25JBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0YNNV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MAKK6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P70IT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP2Z6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V61LZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YWP64R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3S9AI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7PGHH' => 'arhy', 'AT2G32150' => 'ath', 'AT3G62040' => 'ath', 'AT5G02230' => 'ath', 'AT5G59480' => 'ath', 'AT5G59490' => 'ath', 'ATR0332G060' => 'atr', 'ATR0559G190' => 'atr', 'ATR0693G294' => 'atr', 'Atru.chr3.3975' => 'acertr', 'Atru.chr3.3976' => 'acertr', 'Atru.chr3.3977' => 'acertr', 'Atru.chr4.2498' => 'acertr', 'Atru.chr5.838' => 'acertr', 'Atru.chr8.1990' => 'acertr', 'Atru.chr8.1991' => 'acertr', 'Atru.chr8.1992' => 'acertr', 'AUR62001759' => 'cqu', 'AUR62009545' => 'cqu', 'AUR62010474' => 'cqu', 'AUR62025820' => 'cqu', 'AUR62030422' => 'cqu', 'AUR62033605' => 'cqu', 'AUR62038615' => 'cqu', 'AUR62041347' => 'cqu', 'BcaB01g04574' => 'bca', 'BcaB02g09263' => 'bca', 'BcaB02g10453' => 'bca', 'BcaB05g22513' => 'bca', 'BcaB08g36253' => 'bca', 'BcaB08g36254' => 'bca', 'BcaC01g06519' => 'bca', 'BcaC02g11889' => 'bca', 'BcaC03g14010' => 'bca', 'BcaC03g18439' => 'bca', 'BcaC04g19765' => 'bca', 'BcaC09g48432' => 'bca', 'BcaNung07302' => 'bca', 'BolC2t06040H' => 'bol', 'BolC2t07346H' => 'bol', 'BolC3t13817H' => 'bol', 'BolC4t22625H' => 'bol', 'BolC4t23297H' => 'bol', 'BolC8t51278H' => 'bol', 'BolC9t58050H' => 'bol', 'BolC9t58051H' => 'bol', 'BolC9t60163H' => 'bol', 'BraA02t04712Z' => 'bra', 'BraA02t05791Z' => 'bra', 'BraA03t10483Z' => 'bra', 'BraA05t19795Z' => 'bra', 'BraA05t20276Z' => 'bra', 'BraA09t40827Z' => 'bra', 'BraA10t43750Z' => 'bra', 'BraA10t43751Z' => 'bra', 'BraA10t45370Z' => 'bra', 'C02p00400' => 'bna', 'C02p12460' => 'bna', 'C03p13680' => 'bna', 'C04p10270' => 'bna', 'C04p17500' => 'bna', 'C08p37010' => 'bna', 'C09p51880' => 'bna', 'C09p51890' => 'bna', 'C09p74300' => 'bna', 'CAN.G179.26' => 'can', 'CAN.G3384.1' => 'can', 'CAN.G394.68' => 'can', 'CAN.G907.13' => 'can', 'CANSAT11G0012' => 'cansat', 'CANSAT25G1586' => 'cansat', 'CANSAT35G0735' => 'cansat', 'CANSAT54G0556' => 'cansat', 'CANSAT64G0356' => 'cansat', 'CANSAT78G2042' => 'cansat', 'CARHR125920' => 'chi', 'CARHR131910' => 'chi', 'CARHR172390' => 'chi', 'CARHR211140' => 'chi', 'CARHR285850' => 'chi', 'CARHR285860' => 'chi', 'Carub.0004s1347' => 'cru', 'Carub.0004s1960' => 'cru', 'Carub.0005s2880' => 'cru', 'Carub.0006s0107' => 'cru', 'Carub.0008s2015' => 'cru', 'Carub.0008s2016' => 'cru', 'Carub.0008s2017' => 'cru', 'Ca_01315_v3' => 'car', 'Ca_05063_v3' => 'car', 'Ca_10231_v3' => 'car', 'Ca_10913_v3' => 'car', 'Ca_19156_v3' => 'car', 'Ca_23644_v3' => 'car', 'Ca_26735_v3' => 'car', 'Cc01_g13130' => 'ccan', 'Cc02_g21690' => 'ccan', 'Cc03_g03600' => 'ccan', 'Cc06_g02510' => 'ccan', 'CDE02G1265' => 'cde', 'CDE05G0415' => 'cde', 'CDE08G1082' => 'cde', 'Cfa005780' => 'cfa', 'Cfa011522' => 'cfa', 'Cfa011523' => 'cfa', 'Cfa015627' => 'cfa', 'Cfa017359' => 'cfa', 'Ciclev10005687m.g' => 'ccl', 'Ciclev10012173m.g' => 'ccl', 'Ciclev10021621m.g' => 'ccl', 'Ciclev10028968m.g' => 'ccl', 'Ciclev10029907m.g' => 'ccl', 'CiPaw.01G164800' => 'cil', 'CiPaw.07G083700' => 'cil', 'CiPaw.07G127000' => 'cil', 'CiPaw.07G136900' => 'cil', 'CiPaw.08G081700' => 'cil', 'CiPaw.09G194600' => 'cil', 'CiPaw.10G146500' => 'cil', 'CiPaw.13G091500' => 'cil', 'CiPaw.13G091600' => 'cil', 'ClCG00G003390' => 'cla', 'ClCG01G007220' => 'cla', 'ClCG03G001370' => 'cla', 'ClCG04G008100' => 'cla', 'ClCG06G006110' => 'cla', 'ClCG06G006130' => 'cla', 'ClCG10G021210' => 'cla', 'COL.COLO4_07648' => 'col', 'COL.COLO4_07650' => 'col', 'COL.COLO4_07651' => 'col', 'COL.COLO4_14780' => 'col', 'COL.COLO4_18546' => 'col', 'COL.COLO4_18547' => 'col', 'COL.COLO4_23103' => 'col', 'COL.COLO4_30419' => 'col', 'COL.COLO4_34232' => 'col', 'Cpa.g.sc169.20' => 'cpa', 'Cpa.g.sc57.45' => 'cpa', 'Cpa.g.sc58.124' => 'cpa', 'Cpa.g.sc58.125' => 'cpa', 'Cpa.g.sc81.118' => 'cpa', 'Cpa.g.sc81.119' => 'cpa', 'Cre12.g524700' => 'cre', 'CsaV3_1G034430' => 'csa', 'CsaV3_1G034440' => 'csa', 'CsaV3_1G034450' => 'csa', 'CsaV3_3G034830' => 'csa', 'CsaV3_4G025090' => 'csa', 'CsaV3_5G018660' => 'csa', 'CsaV3_6G038160' => 'csa', 'CSS0003447' => 'camsi', 'CSS0017840' => 'camsi', 'CSS0019260' => 'camsi', 'CSS0040375' => 'camsi', 'CSS0042533' => 'camsi', 'DCAR_005960' => 'dca', 'DCAR_012104' => 'dca', 'DCAR_012105' => 'dca', 'DCAR_012293' => 'dca', 'DCAR_015632' => 'dca', 'DCAR_024602' => 'dca', 'DCAR_028752' => 'dca', 'Dinv06261' => 'din', 'Dinv13982' => 'din', 'Dinv17029' => 'din', 'Dinv18463' => 'din', 'Dinv33181' => 'din', 'Dinv35585' => 'din', 'Dinv37161' => 'din', 'Dinv42977' => 'din', 'Dinv43122' => 'din', 'Dinv44517' => 'din', 'Duzib093G0256' => 'dzi', 'Duzib106G1254' => 'dzi', 'Duzib128G1789' => 'dzi', 'Duzib133G0633' => 'dzi', 'Duzib138G0510' => 'dzi', 'Duzib150G1084' => 'dzi', 'Duzib168G0488' => 'dzi', 'Duzib168G1523' => 'dzi', 'Duzib170G0133' => 'dzi', 'ECA234G1433' => 'eca', 'ECA236G1432' => 'eca', 'ECA236G2256' => 'eca', 'ECA236G2365' => 'eca', 'ECA236G4830' => 'eca', 'ECA248G1505' => 'eca', 'EL10Ac3g06431' => 'bvu', 'EL10Ac5g12577' => 'bvu', 'EL10Ac6g13533' => 'bvu', 'EL10Ac7g16045' => 'bvu', 'Eucgr.A01281' => 'egr', 'Eucgr.B02326' => 'egr', 'Eucgr.H03532' => 'egr', 'Eucgr.K00553' => 'egr', 'Eucgr.K03116' => 'egr', 'FAN02G3963' => 'fan', 'FAN05G0438' => 'fan', 'FAN09G2434' => 'fan', 'FAN12G3984' => 'fan', 'FAN14G0798' => 'fan', 'FAN17G0652' => 'fan', 'FAN19G1988' => 'fan', 'FAN22G0632' => 'fan', 'FAN23G0387' => 'fan', 'FAN26G1323' => 'fan', 'FAN28G0666' => 'fan', 'FvH4_1g26080' => 'fve', 'FvH4_3g36780' => 'fve', 'FvH4_4g15270' => 'fve', 'FvH4_6g13490' => 'fve', 'Glyma.01G098700' => 'gma', 'Glyma.03G065900' => 'gma', 'Glyma.03G073754' => 'gma', 'Glyma.03G073758' => 'gma', 'Glyma.03G083200' => 'gma', 'Glyma.03G225500' => 'gma', 'Glyma.05G037766' => 'gma', 'Glyma.07G133500' => 'gma', 'Glyma.10G139400' => 'gma', 'Glyma.10G248900' => 'gma', 'Glyma.11G137800' => 'gma', 'Glyma.12G061300' => 'gma', 'Glyma.13G337900' => 'gma', 'Glyma.15G036600' => 'gma', 'Glyma.18G182800' => 'gma', 'Glyma.19G222500' => 'gma', 'Glyma.20G144800' => 'gma', 'Gohir.A01G222000' => 'ghi', 'Gohir.A03G044000' => 'ghi', 'Gohir.A03G044100' => 'ghi', 'Gohir.A04G083100' => 'ghi', 'Gohir.A07G127200' => 'ghi', 'Gohir.A07G132400' => 'ghi', 'Gohir.A08G000700' => 'ghi', 'Gohir.A11G327300' => 'ghi', 'Gohir.D01G211500' => 'ghi', 'Gohir.D03G123400' => 'ghi', 'Gohir.D03G123500' => 'ghi', 'Gohir.D04G121800' => 'ghi', 'Gohir.D07G131500' => 'ghi', 'Gohir.D07G136600' => 'ghi', 'Gohir.D08G011600' => 'ghi', 'Gohir.D11G346200' => 'ghi', 'Gorai.001G142800' => 'gra', 'Gorai.001G148700' => 'gra', 'Gorai.002G257300' => 'gra', 'Gorai.003G130000' => 'gra', 'Gorai.003G130100' => 'gra', 'Gorai.004G005300' => 'gra', 'Gorai.007G376500' => 'gra', 'Gorai.012G104700' => 'gra', 'GSVIVG01017946001' => 'vvi', 'GSVIVG01024928001' => 'vvi', 'GSVIVG01028227001' => 'vvi', 'GSVIVG01034151001' => 'vvi', 'HanXRQChr05g0135031' => 'han', 'HanXRQChr05g0135041' => 'han', 'HanXRQChr05g0140021' => 'han', 'HanXRQChr06g0178981' => 'han', 'HanXRQChr07g0188251' => 'han', 'HanXRQChr08g0235311' => 'han', 'HanXRQChr09g0271011' => 'han', 'HanXRQChr10g0293321' => 'han', 'HanXRQChr13g0388171' => 'han', 'Haze_00916' => 'cav', 'Haze_05063' => 'cav', 'Haze_20814' => 'cav', 'Haze_24128' => 'cav', 'Hma1.2p1_0745F.1_g212010' => 'hma', 'Hma1.2p1_0757F.1_g213260' => 'hma', 'Hma1.2p1_0936F.1_g238840' => 'hma', 'Hma1.2p1_1735F.1_g299890' => 'hma', 'Hma1.2p1_1861F.1_g305685' => 'hma', 'HPP92_003397' => 'vpl', 'HPP92_012597' => 'vpl', 'HPP92_015520' => 'vpl', 'HPP92_015539' => 'vpl', 'HPP92_020373' => 'vpl', 'Hund04938' => 'sun', 'Hund10677' => 'sun', 'Hund11033' => 'sun', 'Hund12155' => 'sun', 'Lalb_Chr01g0022551' => 'lal', 'Lalb_Chr03g0042341' => 'lal', 'Lalb_Chr07g0192931' => 'lal', 'Lalb_Chr12g0209551' => 'lal', 'Lalb_Chr19g0125251' => 'lal', 'Lalb_Chr19g0137891' => 'lal', 'Lalb_Chr21g0304641' => 'lal', 'Lalb_Chr21g0309881' => 'lal', 'Lj1A5T12' => 'lonja', 'Lj1C148G10' => 'lonja', 'Lj2A93T83' => 'lonja', 'Lj3A738G68' => 'lonja', 'Lj3C966T1' => 'lonja', 'Lj3g0018958' => 'lja', 'Lj3g0021831' => 'lja', 'Lj3g0025443' => 'lja', 'Lj4g0026809' => 'lja', 'Lj5g0012558' => 'lja', 'Lj5g0021586' => 'lja', 'Lsat_1_v5_gn_5_156840' => 'lsa', 'Lsat_1_v5_gn_8_73460' => 'lsa', 'Lsat_1_v5_gn_8_73481' => 'lsa', 'Lsat_1_v5_gn_9_31601' => 'lsa', 'Lsat_1_v5_gn_9_77320' => 'lsa', 'Manes.01G171300' => 'mes', 'Manes.01G171400' => 'mes', 'Manes.01G236100' => 'mes', 'Manes.02G130500' => 'mes', 'Manes.02G130600' => 'mes', 'Manes.03G180200' => 'mes', 'Manes.05G007000' => 'mes', 'Manes.08G084400' => 'mes', 'Manes.09G092600' => 'mes', 'Manes.15G027900' => 'mes', 'MBI04_g40948_MAGBIO' => 'mbi', 'MBI14_g12123_MAGBIO' => 'mbi', 'MBI18_g28915_MAGBIO' => 'mbi', 'MCO09G053' => 'mco', 'MCO11G782' => 'mco', 'MCO15G215' => 'mco', 'MD03G1088500' => 'mdo', 'MD03G1088600' => 'mdo', 'MD04G1130800' => 'mdo', 'MD09G1291700' => 'mdo', 'MD11G1097500' => 'mdo', 'MD11G1097600' => 'mdo', 'MD12G1143900' => 'mdo', 'MD13G1191400' => 'mdo', 'MD16G1191500' => 'mdo', 'Medtr1g085570' => 'mtr', 'Medtr1g104610' => 'mtr', 'Medtr2g097520' => 'mtr', 'Medtr4g021800' => 'mtr', 'Medtr4g021825' => 'mtr', 'Medtr4g064270' => 'mtr', 'Medtr4g064380' => 'mtr', 'Medtr7g062150' => 'mtr', 'MELO3C003138.2' => 'cme', 'MELO3C005187.2' => 'cme', 'MELO3C009252.2' => 'cme', 'MELO3C014481.2' => 'cme', 'MELO3C020616.2' => 'cme', 'MELO3C020617.2' => 'cme', 'MELO3C020618.2' => 'cme', 'Migut.G00328' => 'egut', 'Migut.J00320' => 'egut', 'Migut.L01000' => 'egut', 'Migut.L01953' => 'egut', 'MSTRG.10253' => 'ama', 'MSTRG.19077' => 'ama', 'MSTRG.26780' => 'ama', 'MSTRG.4023' => 'ama', 'MSTRG.5655' => 'ama', 'MSTRG.9992' => 'ama', 'Nitab4.5_0000043g0310' => 'nta', 'Nitab4.5_0000463g0080' => 'nta', 'Nitab4.5_0000705g0170' => 'nta', 'Nitab4.5_0001326g0060' => 'nta', 'Nitab4.5_0001628g0030' => 'nta', 'Nitab4.5_0002103g0110' => 'nta', 'Nitab4.5_0002946g0030' => 'nta', 'Nitab4.5_0004639g0030' => 'nta', 'Nn2g11149' => 'nnu', 'Nn2g13389' => 'nnu', 'Nn4g25326' => 'nnu', 'Nn4g26290' => 'nnu', 'Nn5g29865' => 'nnu', 'Oeu004163.1' => 'oeu', 'Oeu006901.1' => 'oeu', 'Oeu010096.1' => 'oeu', 'Oeu024340.1' => 'oeu', 'Oeu048369.1' => 'oeu', 'Os01g0973000' => 'osa', 'Os03g0273800' => 'osa', 'Os03g0701200' => 'osa', 'Os03g0834050' => 'osa', 'Os07g0634400' => 'osa', 'Peaxi162Scf00092g01414' => 'pax', 'Peaxi162Scf00165g00818' => 'pax', 'Peaxi162Scf00309g00516' => 'pax', 'Peaxi162Scf00774g00218' => 'pax', 'PGR004G1824' => 'pgr', 'PGR004G2606' => 'pgr', 'PGR031G2716' => 'pgr', 'PGR102G2460' => 'pgr', 'PGR142G2599' => 'pgr', 'PGSC0003DMG400000843' => 'stu', 'PGSC0003DMG400008829' => 'stu', 'PGSC0003DMG400030418' => 'stu', 'PGSC0003DMG400031834' => 'stu', 'PGSC0003DMG401028300' => 'stu', 'PGSC0003DMG402028300' => 'stu', 'Phvul.001G219300' => 'pvu', 'Phvul.007G056000' => 'pvu', 'Phvul.007G208000' => 'pvu', 'Phvul.008G119500' => 'pvu', 'Phvul.010G011200' => 'pvu', 'Phvul.010G014800' => 'pvu', 'Phvul.011G062900' => 'pvu', 'Phvul.L007043' => 'pvu', 'Potri.001G242300' => 'ptr', 'Potri.002G185300' => 'ptr', 'Potri.006G086900' => 'ptr', 'Potri.008G151700' => 'ptr', 'Potri.009G033500' => 'ptr', 'Potri.010G089300' => 'ptr', 'Potri.014G110800' => 'ptr', 'Pp3c27_8130' => 'ppa', 'Pp3c6_27410' => 'ppa', 'PRCOL_00001659' => 'pco', 'PRCOL_00001927' => 'pco', 'PRCOL_00003649' => 'pco', 'Prupe.1G011600' => 'ppe', 'Prupe.3G000800' => 'ppe', 'Prupe.3G001100' => 'ppe', 'Prupe.6G072700' => 'ppe', 'Prupe.6G072800' => 'ppe', 'Prupe.6G257300' => 'ppe', 'Prupe.8G033000' => 'ppe', 'Psat0s2633g0080' => 'psa', 'Psat0s3396g0080' => 'psa', 'Psat0s3396g0200' => 'psa', 'Psat3g139080' => 'psa', 'Psat5g285080' => 'psa', 'Psat6g157760' => 'psa', 'Psat6g208440' => 'psa', 'Psat7g215320' => 'psa', 'Psat7g215400' => 'psa', 'Psat7g235600' => 'psa', 'Psat7g235760' => 'psa', 'PSO063G4603' => 'pso', 'PSO210G0182' => 'pso', 'PSO210G0196' => 'pso', 'PSO339G0394' => 'pso', 'PSO339G4127' => 'pso', 'PSO513G0064' => 'pso', 'PSO761G0079' => 'pso', 'QL01p031003' => 'qlo', 'QL01p031078' => 'qlo', 'QL06p003004' => 'qlo', 'QL07p048731' => 'qlo', 'QL09p037427' => 'qlo', 'RcHm_v2.0_Chr3g0466361' => 'rch', 'RcHm_v2.0_Chr3g0485571' => 'rch', 'RcHm_v2.0_Chr4g0416551' => 'rch', 'RcHm_v2.0_Chr5g0065831' => 'rch', 'Rhsim01G0230500' => 'rsi', 'Rhsim05G0194000' => 'rsi', 'Rhsim08G0250400' => 'rsi', 'Sabra02G0131000' => 'sbr', 'Sabra06G0066300' => 'sbr', 'Sabra08G0115500' => 'sbr', 'Sabra09G0023900' => 'sbr', 'Sabra10G0054000' => 'sbr', 'Sabra14G0081500' => 'sbr', 'Sabra16G0147100' => 'sbr', 'SalBow2G2957' => 'sbo', 'SalBow4G3320' => 'sbo', 'SalBow8G1894' => 'sbo', 'Sc07g0007950' => 'sci', 'Sc12g0001360' => 'sci', 'Sc13g0004330' => 'sci', 'Sc20g0005010' => 'sci', 'Sed0000361' => 'sed', 'Sed0001706' => 'sed', 'Sed0002422' => 'sed', 'Sed0004029' => 'sed', 'Sed0004602' => 'sed', 'Sed0004943' => 'sed', 'Sed0008646' => 'sed', 'Sed0023313' => 'sed', 'Sed0024843' => 'sed', 'SEGI_00081' => 'sgi', 'SEGI_00947' => 'sgi', 'SEGI_04046' => 'sgi', 'SEGI_06880' => 'sgi', 'SEGI_09736' => 'sgi', 'SEGI_12741' => 'sgi', 'SEGI_14530' => 'sgi', 'SEGI_20705' => 'sgi', 'SEGI_26088' => 'sgi', 'SEGI_28323' => 'sgi', 'SEGI_33343' => 'sgi', 'SGA_v2.0_scaffold126G33775' => 'sas', 'SGA_v2.0_scaffold2G01337' => 'sas', 'SGA_v2.0_scaffold38G15006' => 'sas', 'SGA_v2.0_scaffold39G15264' => 'sas', 'SGA_v2.0_scaffold453G51880' => 'sas', 'SHI12696' => 'shi', 'SMO367G1096' => 'smo', 'Solyc01g068630.3' => 'sly', 'Solyc05g011880.3' => 'sly', 'Solyc06g076300.3' => 'sly', 'Solyc09g010940.4' => 'sly', 'Solyc09g075890.3' => 'sly', 'Sopen01g030560' => 'spe', 'Sopen05g006630' => 'spe', 'Sopen06g032720' => 'spe', 'Sopen09g005660' => 'spe', 'Sopen09g030690' => 'spe', 'Sp4g14540' => 'spa', 'Sp4g20030' => 'spa', 'Sp5g01320' => 'spa', 'Sp6g21170' => 'spa', 'Sp6g21180' => 'spa', 'Sp6g21190' => 'spa', 'Sp6g40220' => 'spa', 'TAR362G0122' => 'tar', 'TAR362G1338' => 'tar', 'TAR369G0590' => 'tar', 'TAR371G0824' => 'tar', 'TAR622G1429' => 'tar', 'TAR623G0734' => 'tar', 'TAR625G0441' => 'tar', 'TAR629G0976' => 'tar', 'TAR633G1195' => 'tar', 'TAR636G2660' => 'tar', 'THA.LOC104799440' => 'tha', 'THA.LOC104800966' => 'tha', 'THA.LOC104806559' => 'tha', 'THA.LOC104810765' => 'tha', 'THA.LOC104816266' => 'tha', 'THA.LOC104817419' => 'tha', 'THA.LOC104827021' => 'tha', 'Thecc.01G327400' => 'tca', 'Thecc.04G229200' => 'tca', 'Thecc.05G037400' => 'tca', 'Thecc.09G318600' => 'tca', 'Thecc.09G318700' => 'tca', 'Thhalv10006238m.g' => 'esa', 'Thhalv10014321m.g' => 'esa', 'Thhalv10014335m.g' => 'esa', 'Thhalv10015826m.g' => 'esa', 'Thhalv10017107m.g' => 'esa', 'Thhalv10017180m.g' => 'esa', 'Thhalv10029339m.g' => 'esa', 'TPR.G1699' => 'tpr', 'TPR.G23609' => 'tpr', 'TPR.G3081' => 'tpr', 'TPR.G40397' => 'tpr', 'TPR.G5522' => 'tpr', 'TPR.G5618' => 'tpr', 'TPR.G5626' => 'tpr', 'TWI09G1632' => 'twi', 'TWI23G1230' => 'twi', 'TWI53G1064' => 'twi', 'TWI59G0751' => 'twi', 'TWI74G0947' => 'twi', 'TWI77G0337' => 'twi', 'TWI79G1254' => 'twi', 'unitig_0.g2341' => 'ugi', 'unitig_26.g10006' => 'ugi', 'unitig_26.g10008' => 'ugi', 'unitig_26.g9192' => 'ugi', 'vmacro14547' => 'vma', 'vmacro15333' => 'vma', 'vmacro18743' => 'vma', 'vmacro20166' => 'vma', 'VMungo0331G0523' => 'vmu', 'VMungo0331G1202' => 'vmu', 'VMungo0720G1228' => 'vmu', 'VMungo0720G1514' => 'vmu', 'VMungo1080G0169' => 'vmu', 'VMungo1127G1475' => 'vmu', 'VMungo1383G1208' => 'vmu', 'VMungo1383G1698' => 'vmu', 'Zm00001eb012270' => 'zma', 'Zm00001eb054100' => 'zma', 'Zm00001eb063350' => 'zma', 'Zm00001eb328560' => 'zma', 'Zm00001eb342820' => 'zma', 'Zm00001eb362210' => 'zma', 'Zm00001eb397730' => 'zma', 'Zm00001eb399750' => 'zma' ), 'gf_id' => 'HOM05D000959', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000959' ), 'data_identifier' => 'HOM05D000959', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000959', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '622', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p07100' => 'bna', 'A03p11720' => 'bna', 'A05p08300' => 'bna', 'A05p13380' => 'bna', 'A09p54130' => 'bna', 'A10p16690' => 'bna', 'A10p16700' => 'bna', 'A10p33390' => 'bna', 'Aa31LG10G16020' => 'aar', 'Aa31LG1G11810' => 'aar', 'Aa31LG1G11830' => 'aar', 'Aa31LG1G22510' => 'aar', 'Aa31LG5G4890' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5793' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2310' => 'aag', 'Actinidia08499' => 'ach', 'Actinidia11262' => 'ach', 'Actinidia23926' => 'ach', 'Actinidia34420' => 'ach', 'Actinidia36970' => 'ach', 'Ah.02g111220' => 'amhyb', 'Ah.15g097750' => 'amhyb', 'AL4G27500' => 'aly', 'AL6G11470' => 'aly', 'AL8G35950' => 'aly', 'AL8G35960' => 'aly', 'AL8G35970' => 'aly', 'Aqoxy1G00912' => 'aox', 'Aqoxy2G02253' => 'aox', 'Aqoxy2G02411' => 'aox', 'Aqoxy5G00485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BZ66YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K8ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM4FUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6BF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HFV7XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25JBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0YNNV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MAKK6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P70IT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP2Z6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V61LZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YWP64R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3S9AI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7PGHH' => 'arhy', 'AT2G32150' => 'ath', 'AT3G62040' => 'ath', 'AT5G02230' => 'ath', 'AT5G59480' => 'ath', 'AT5G59490' => 'ath', 'ATR0332G060' => 'atr', 'ATR0559G190' => 'atr', 'ATR0693G294' => 'atr', 'Atru.chr3.3975' => 'acertr', 'Atru.chr3.3976' => 'acertr', 'Atru.chr3.3977' => 'acertr', 'Atru.chr4.2498' => 'acertr', 'Atru.chr5.838' => 'acertr', 'Atru.chr8.1990' => 'acertr', 'Atru.chr8.1991' => 'acertr', 'Atru.chr8.1992' => 'acertr', 'AUR62001759' => 'cqu', 'AUR62009545' => 'cqu', 'AUR62010474' => 'cqu', 'AUR62025820' => 'cqu', 'AUR62030422' => 'cqu', 'AUR62033605' => 'cqu', 'AUR62038615' => 'cqu', 'AUR62041347' => 'cqu', 'BcaB01g04574' => 'bca', 'BcaB02g09263' => 'bca', 'BcaB02g10453' => 'bca', 'BcaB05g22513' => 'bca', 'BcaB08g36253' => 'bca', 'BcaB08g36254' => 'bca', 'BcaC01g06519' => 'bca', 'BcaC02g11889' => 'bca', 'BcaC03g14010' => 'bca', 'BcaC03g18439' => 'bca', 'BcaC04g19765' => 'bca', 'BcaC09g48432' => 'bca', 'BcaNung07302' => 'bca', 'BolC2t06040H' => 'bol', 'BolC2t07346H' => 'bol', 'BolC3t13817H' => 'bol', 'BolC4t22625H' => 'bol', 'BolC4t23297H' => 'bol', 'BolC8t51278H' => 'bol', 'BolC9t58050H' => 'bol', 'BolC9t58051H' => 'bol', 'BolC9t60163H' => 'bol', 'BraA02t04712Z' => 'bra', 'BraA02t05791Z' => 'bra', 'BraA03t10483Z' => 'bra', 'BraA05t19795Z' => 'bra', 'BraA05t20276Z' => 'bra', 'BraA09t40827Z' => 'bra', 'BraA10t43750Z' => 'bra', 'BraA10t43751Z' => 'bra', 'BraA10t45370Z' => 'bra', 'C02p00400' => 'bna', 'C02p12460' => 'bna', 'C03p13680' => 'bna', 'C04p10270' => 'bna', 'C04p17500' => 'bna', 'C08p37010' => 'bna', 'C09p51880' => 'bna', 'C09p51890' => 'bna', 'C09p74300' => 'bna', 'CAN.G179.26' => 'can', 'CAN.G3384.1' => 'can', 'CAN.G394.68' => 'can', 'CAN.G907.13' => 'can', 'CANSAT11G0012' => 'cansat', 'CANSAT25G1586' => 'cansat', 'CANSAT35G0735' => 'cansat', 'CANSAT54G0556' => 'cansat', 'CANSAT64G0356' => 'cansat', 'CANSAT78G2042' => 'cansat', 'CARHR125920' => 'chi', 'CARHR131910' => 'chi', 'CARHR172390' => 'chi', 'CARHR211140' => 'chi', 'CARHR285850' => 'chi', 'CARHR285860' => 'chi', 'Carub.0004s1347' => 'cru', 'Carub.0004s1960' => 'cru', 'Carub.0005s2880' => 'cru', 'Carub.0006s0107' => 'cru', 'Carub.0008s2015' => 'cru', 'Carub.0008s2016' => 'cru', 'Carub.0008s2017' => 'cru', 'Ca_01315_v3' => 'car', 'Ca_05063_v3' => 'car', 'Ca_10231_v3' => 'car', 'Ca_10913_v3' => 'car', 'Ca_19156_v3' => 'car', 'Ca_23644_v3' => 'car', 'Ca_26735_v3' => 'car', 'Cc01_g13130' => 'ccan', 'Cc02_g21690' => 'ccan', 'Cc03_g03600' => 'ccan', 'Cc06_g02510' => 'ccan', 'CDE02G1265' => 'cde', 'CDE05G0415' => 'cde', 'CDE08G1082' => 'cde', 'Cfa005780' => 'cfa', 'Cfa011522' => 'cfa', 'Cfa011523' => 'cfa', 'Cfa015627' => 'cfa', 'Cfa017359' => 'cfa', 'Ciclev10005687m.g' => 'ccl', 'Ciclev10012173m.g' => 'ccl', 'Ciclev10021621m.g' => 'ccl', 'Ciclev10028968m.g' => 'ccl', 'Ciclev10029907m.g' => 'ccl', 'CiPaw.01G164800' => 'cil', 'CiPaw.07G083700' => 'cil', 'CiPaw.07G127000' => 'cil', 'CiPaw.07G136900' => 'cil', 'CiPaw.08G081700' => 'cil', 'CiPaw.09G194600' => 'cil', 'CiPaw.10G146500' => 'cil', 'CiPaw.13G091500' => 'cil', 'CiPaw.13G091600' => 'cil', 'ClCG00G003390' => 'cla', 'ClCG01G007220' => 'cla', 'ClCG03G001370' => 'cla', 'ClCG04G008100' => 'cla', 'ClCG06G006110' => 'cla', 'ClCG06G006130' => 'cla', 'ClCG10G021210' => 'cla', 'COL.COLO4_07648' => 'col', 'COL.COLO4_07650' => 'col', 'COL.COLO4_07651' => 'col', 'COL.COLO4_14780' => 'col', 'COL.COLO4_18546' => 'col', 'COL.COLO4_18547' => 'col', 'COL.COLO4_23103' => 'col', 'COL.COLO4_30419' => 'col', 'COL.COLO4_34232' => 'col', 'Cpa.g.sc169.20' => 'cpa', 'Cpa.g.sc57.45' => 'cpa', 'Cpa.g.sc58.124' => 'cpa', 'Cpa.g.sc58.125' => 'cpa', 'Cpa.g.sc81.118' => 'cpa', 'Cpa.g.sc81.119' => 'cpa', 'Cre12.g524700' => 'cre', 'CsaV3_1G034430' => 'csa', 'CsaV3_1G034440' => 'csa', 'CsaV3_1G034450' => 'csa', 'CsaV3_3G034830' => 'csa', 'CsaV3_4G025090' => 'csa', 'CsaV3_5G018660' => 'csa', 'CsaV3_6G038160' => 'csa', 'CSS0003447' => 'camsi', 'CSS0017840' => 'camsi', 'CSS0019260' => 'camsi', 'CSS0040375' => 'camsi', 'CSS0042533' => 'camsi', 'DCAR_005960' => 'dca', 'DCAR_012104' => 'dca', 'DCAR_012105' => 'dca', 'DCAR_012293' => 'dca', 'DCAR_015632' => 'dca', 'DCAR_024602' => 'dca', 'DCAR_028752' => 'dca', 'Dinv06261' => 'din', 'Dinv13982' => 'din', 'Dinv17029' => 'din', 'Dinv18463' => 'din', 'Dinv33181' => 'din', 'Dinv35585' => 'din', 'Dinv37161' => 'din', 'Dinv42977' => 'din', 'Dinv43122' => 'din', 'Dinv44517' => 'din', 'Duzib093G0256' => 'dzi', 'Duzib106G1254' => 'dzi', 'Duzib128G1789' => 'dzi', 'Duzib133G0633' => 'dzi', 'Duzib138G0510' => 'dzi', 'Duzib150G1084' => 'dzi', 'Duzib168G0488' => 'dzi', 'Duzib168G1523' => 'dzi', 'Duzib170G0133' => 'dzi', 'ECA234G1433' => 'eca', 'ECA236G1432' => 'eca', 'ECA236G2256' => 'eca', 'ECA236G2365' => 'eca', 'ECA236G4830' => 'eca', 'ECA248G1505' => 'eca', 'EL10Ac3g06431' => 'bvu', 'EL10Ac5g12577' => 'bvu', 'EL10Ac6g13533' => 'bvu', 'EL10Ac7g16045' => 'bvu', 'Eucgr.A01281' => 'egr', 'Eucgr.B02326' => 'egr', 'Eucgr.H03532' => 'egr', 'Eucgr.K00553' => 'egr', 'Eucgr.K03116' => 'egr', 'FAN02G3963' => 'fan', 'FAN05G0438' => 'fan', 'FAN09G2434' => 'fan', 'FAN12G3984' => 'fan', 'FAN14G0798' => 'fan', 'FAN17G0652' => 'fan', 'FAN19G1988' => 'fan', 'FAN22G0632' => 'fan', 'FAN23G0387' => 'fan', 'FAN26G1323' => 'fan', 'FAN28G0666' => 'fan', 'FvH4_1g26080' => 'fve', 'FvH4_3g36780' => 'fve', 'FvH4_4g15270' => 'fve', 'FvH4_6g13490' => 'fve', 'Glyma.01G098700' => 'gma', 'Glyma.03G065900' => 'gma', 'Glyma.03G073754' => 'gma', 'Glyma.03G073758' => 'gma', 'Glyma.03G083200' => 'gma', 'Glyma.03G225500' => 'gma', 'Glyma.05G037766' => 'gma', 'Glyma.07G133500' => 'gma', 'Glyma.10G139400' => 'gma', 'Glyma.10G248900' => 'gma', 'Glyma.11G137800' => 'gma', 'Glyma.12G061300' => 'gma', 'Glyma.13G337900' => 'gma', 'Glyma.15G036600' => 'gma', 'Glyma.18G182800' => 'gma', 'Glyma.19G222500' => 'gma', 'Glyma.20G144800' => 'gma', 'Gohir.A01G222000' => 'ghi', 'Gohir.A03G044000' => 'ghi', 'Gohir.A03G044100' => 'ghi', 'Gohir.A04G083100' => 'ghi', 'Gohir.A07G127200' => 'ghi', 'Gohir.A07G132400' => 'ghi', 'Gohir.A08G000700' => 'ghi', 'Gohir.A11G327300' => 'ghi', 'Gohir.D01G211500' => 'ghi', 'Gohir.D03G123400' => 'ghi', 'Gohir.D03G123500' => 'ghi', 'Gohir.D04G121800' => 'ghi', 'Gohir.D07G131500' => 'ghi', 'Gohir.D07G136600' => 'ghi', 'Gohir.D08G011600' => 'ghi', 'Gohir.D11G346200' => 'ghi', 'Gorai.001G142800' => 'gra', 'Gorai.001G148700' => 'gra', 'Gorai.002G257300' => 'gra', 'Gorai.003G130000' => 'gra', 'Gorai.003G130100' => 'gra', 'Gorai.004G005300' => 'gra', 'Gorai.007G376500' => 'gra', 'Gorai.012G104700' => 'gra', 'GSVIVG01017946001' => 'vvi', 'GSVIVG01024928001' => 'vvi', 'GSVIVG01028227001' => 'vvi', 'GSVIVG01034151001' => 'vvi', 'HanXRQChr05g0135031' => 'han', 'HanXRQChr05g0135041' => 'han', 'HanXRQChr05g0140021' => 'han', 'HanXRQChr06g0178981' => 'han', 'HanXRQChr07g0188251' => 'han', 'HanXRQChr08g0235311' => 'han', 'HanXRQChr09g0271011' => 'han', 'HanXRQChr10g0293321' => 'han', 'HanXRQChr13g0388171' => 'han', 'Haze_00916' => 'cav', 'Haze_05063' => 'cav', 'Haze_20814' => 'cav', 'Haze_24128' => 'cav', 'Hma1.2p1_0745F.1_g212010' => 'hma', 'Hma1.2p1_0757F.1_g213260' => 'hma', 'Hma1.2p1_0936F.1_g238840' => 'hma', 'Hma1.2p1_1735F.1_g299890' => 'hma', 'Hma1.2p1_1861F.1_g305685' => 'hma', 'HPP92_003397' => 'vpl', 'HPP92_012597' => 'vpl', 'HPP92_015520' => 'vpl', 'HPP92_015539' => 'vpl', 'HPP92_020373' => 'vpl', 'Hund04938' => 'sun', 'Hund10677' => 'sun', 'Hund11033' => 'sun', 'Hund12155' => 'sun', 'Lalb_Chr01g0022551' => 'lal', 'Lalb_Chr03g0042341' => 'lal', 'Lalb_Chr07g0192931' => 'lal', 'Lalb_Chr12g0209551' => 'lal', 'Lalb_Chr19g0125251' => 'lal', 'Lalb_Chr19g0137891' => 'lal', 'Lalb_Chr21g0304641' => 'lal', 'Lalb_Chr21g0309881' => 'lal', 'Lj1A5T12' => 'lonja', 'Lj1C148G10' => 'lonja', 'Lj2A93T83' => 'lonja', 'Lj3A738G68' => 'lonja', 'Lj3C966T1' => 'lonja', 'Lj3g0018958' => 'lja', 'Lj3g0021831' => 'lja', 'Lj3g0025443' => 'lja', 'Lj4g0026809' => 'lja', 'Lj5g0012558' => 'lja', 'Lj5g0021586' => 'lja', 'Lsat_1_v5_gn_5_156840' => 'lsa', 'Lsat_1_v5_gn_8_73460' => 'lsa', 'Lsat_1_v5_gn_8_73481' => 'lsa', 'Lsat_1_v5_gn_9_31601' => 'lsa', 'Lsat_1_v5_gn_9_77320' => 'lsa', 'Manes.01G171300' => 'mes', 'Manes.01G171400' => 'mes', 'Manes.01G236100' => 'mes', 'Manes.02G130500' => 'mes', 'Manes.02G130600' => 'mes', 'Manes.03G180200' => 'mes', 'Manes.05G007000' => 'mes', 'Manes.08G084400' => 'mes', 'Manes.09G092600' => 'mes', 'Manes.15G027900' => 'mes', 'MBI04_g40948_MAGBIO' => 'mbi', 'MBI14_g12123_MAGBIO' => 'mbi', 'MBI18_g28915_MAGBIO' => 'mbi', 'MCO09G053' => 'mco', 'MCO11G782' => 'mco', 'MCO15G215' => 'mco', 'MD03G1088500' => 'mdo', 'MD03G1088600' => 'mdo', 'MD04G1130800' => 'mdo', 'MD09G1291700' => 'mdo', 'MD11G1097500' => 'mdo', 'MD11G1097600' => 'mdo', 'MD12G1143900' => 'mdo', 'MD13G1191400' => 'mdo', 'MD16G1191500' => 'mdo', 'Medtr1g085570' => 'mtr', 'Medtr1g104610' => 'mtr', 'Medtr2g097520' => 'mtr', 'Medtr4g021800' => 'mtr', 'Medtr4g021825' => 'mtr', 'Medtr4g064270' => 'mtr', 'Medtr4g064380' => 'mtr', 'Medtr7g062150' => 'mtr', 'MELO3C003138.2' => 'cme', 'MELO3C005187.2' => 'cme', 'MELO3C009252.2' => 'cme', 'MELO3C014481.2' => 'cme', 'MELO3C020616.2' => 'cme', 'MELO3C020617.2' => 'cme', 'MELO3C020618.2' => 'cme', 'Migut.G00328' => 'egut', 'Migut.J00320' => 'egut', 'Migut.L01000' => 'egut', 'Migut.L01953' => 'egut', 'MSTRG.10253' => 'ama', 'MSTRG.19077' => 'ama', 'MSTRG.26780' => 'ama', 'MSTRG.4023' => 'ama', 'MSTRG.5655' => 'ama', 'MSTRG.9992' => 'ama', 'Nitab4.5_0000043g0310' => 'nta', 'Nitab4.5_0000463g0080' => 'nta', 'Nitab4.5_0000705g0170' => 'nta', 'Nitab4.5_0001326g0060' => 'nta', 'Nitab4.5_0001628g0030' => 'nta', 'Nitab4.5_0002103g0110' => 'nta', 'Nitab4.5_0002946g0030' => 'nta', 'Nitab4.5_0004639g0030' => 'nta', 'Nn2g11149' => 'nnu', 'Nn2g13389' => 'nnu', 'Nn4g25326' => 'nnu', 'Nn4g26290' => 'nnu', 'Nn5g29865' => 'nnu', 'Oeu004163.1' => 'oeu', 'Oeu006901.1' => 'oeu', 'Oeu010096.1' => 'oeu', 'Oeu024340.1' => 'oeu', 'Oeu048369.1' => 'oeu', 'Os01g0973000' => 'osa', 'Os03g0273800' => 'osa', 'Os03g0701200' => 'osa', 'Os03g0834050' => 'osa', 'Os07g0634400' => 'osa', 'Peaxi162Scf00092g01414' => 'pax', 'Peaxi162Scf00165g00818' => 'pax', 'Peaxi162Scf00309g00516' => 'pax', 'Peaxi162Scf00774g00218' => 'pax', 'PGR004G1824' => 'pgr', 'PGR004G2606' => 'pgr', 'PGR031G2716' => 'pgr', 'PGR102G2460' => 'pgr', 'PGR142G2599' => 'pgr', 'PGSC0003DMG400000843' => 'stu', 'PGSC0003DMG400008829' => 'stu', 'PGSC0003DMG400030418' => 'stu', 'PGSC0003DMG400031834' => 'stu', 'PGSC0003DMG401028300' => 'stu', 'PGSC0003DMG402028300' => 'stu', 'Phvul.001G219300' => 'pvu', 'Phvul.007G056000' => 'pvu', 'Phvul.007G208000' => 'pvu', 'Phvul.008G119500' => 'pvu', 'Phvul.010G011200' => 'pvu', 'Phvul.010G014800' => 'pvu', 'Phvul.011G062900' => 'pvu', 'Phvul.L007043' => 'pvu', 'Potri.001G242300' => 'ptr', 'Potri.002G185300' => 'ptr', 'Potri.006G086900' => 'ptr', 'Potri.008G151700' => 'ptr', 'Potri.009G033500' => 'ptr', 'Potri.010G089300' => 'ptr', 'Potri.014G110800' => 'ptr', 'Pp3c27_8130' => 'ppa', 'Pp3c6_27410' => 'ppa', 'PRCOL_00001659' => 'pco', 'PRCOL_00001927' => 'pco', 'PRCOL_00003649' => 'pco', 'Prupe.1G011600' => 'ppe', 'Prupe.3G000800' => 'ppe', 'Prupe.3G001100' => 'ppe', 'Prupe.6G072700' => 'ppe', 'Prupe.6G072800' => 'ppe', 'Prupe.6G257300' => 'ppe', 'Prupe.8G033000' => 'ppe', 'Psat0s2633g0080' => 'psa', 'Psat0s3396g0080' => 'psa', 'Psat0s3396g0200' => 'psa', 'Psat3g139080' => 'psa', 'Psat5g285080' => 'psa', 'Psat6g157760' => 'psa', 'Psat6g208440' => 'psa', 'Psat7g215320' => 'psa', 'Psat7g215400' => 'psa', 'Psat7g235600' => 'psa', 'Psat7g235760' => 'psa', 'PSO063G4603' => 'pso', 'PSO210G0182' => 'pso', 'PSO210G0196' => 'pso', 'PSO339G0394' => 'pso', 'PSO339G4127' => 'pso', 'PSO513G0064' => 'pso', 'PSO761G0079' => 'pso', 'QL01p031003' => 'qlo', 'QL01p031078' => 'qlo', 'QL06p003004' => 'qlo', 'QL07p048731' => 'qlo', 'QL09p037427' => 'qlo', 'RcHm_v2.0_Chr3g0466361' => 'rch', 'RcHm_v2.0_Chr3g0485571' => 'rch', 'RcHm_v2.0_Chr4g0416551' => 'rch', 'RcHm_v2.0_Chr5g0065831' => 'rch', 'Rhsim01G0230500' => 'rsi', 'Rhsim05G0194000' => 'rsi', 'Rhsim08G0250400' => 'rsi', 'Sabra02G0131000' => 'sbr', 'Sabra06G0066300' => 'sbr', 'Sabra08G0115500' => 'sbr', 'Sabra09G0023900' => 'sbr', 'Sabra10G0054000' => 'sbr', 'Sabra14G0081500' => 'sbr', 'Sabra16G0147100' => 'sbr', 'SalBow2G2957' => 'sbo', 'SalBow4G3320' => 'sbo', 'SalBow8G1894' => 'sbo', 'Sc07g0007950' => 'sci', 'Sc12g0001360' => 'sci', 'Sc13g0004330' => 'sci', 'Sc20g0005010' => 'sci', 'Sed0000361' => 'sed', 'Sed0001706' => 'sed', 'Sed0002422' => 'sed', 'Sed0004029' => 'sed', 'Sed0004602' => 'sed', 'Sed0004943' => 'sed', 'Sed0008646' => 'sed', 'Sed0023313' => 'sed', 'Sed0024843' => 'sed', 'SEGI_00081' => 'sgi', 'SEGI_00947' => 'sgi', 'SEGI_04046' => 'sgi', 'SEGI_06880' => 'sgi', 'SEGI_09736' => 'sgi', 'SEGI_12741' => 'sgi', 'SEGI_14530' => 'sgi', 'SEGI_20705' => 'sgi', 'SEGI_26088' => 'sgi', 'SEGI_28323' => 'sgi', 'SEGI_33343' => 'sgi', 'SGA_v2.0_scaffold126G33775' => 'sas', 'SGA_v2.0_scaffold2G01337' => 'sas', 'SGA_v2.0_scaffold38G15006' => 'sas', 'SGA_v2.0_scaffold39G15264' => 'sas', 'SGA_v2.0_scaffold453G51880' => 'sas', 'SHI12696' => 'shi', 'SMO367G1096' => 'smo', 'Solyc01g068630.3' => 'sly', 'Solyc05g011880.3' => 'sly', 'Solyc06g076300.3' => 'sly', 'Solyc09g010940.4' => 'sly', 'Solyc09g075890.3' => 'sly', 'Sopen01g030560' => 'spe', 'Sopen05g006630' => 'spe', 'Sopen06g032720' => 'spe', 'Sopen09g005660' => 'spe', 'Sopen09g030690' => 'spe', 'Sp4g14540' => 'spa', 'Sp4g20030' => 'spa', 'Sp5g01320' => 'spa', 'Sp6g21170' => 'spa', 'Sp6g21180' => 'spa', 'Sp6g21190' => 'spa', 'Sp6g40220' => 'spa', 'TAR362G0122' => 'tar', 'TAR362G1338' => 'tar', 'TAR369G0590' => 'tar', 'TAR371G0824' => 'tar', 'TAR622G1429' => 'tar', 'TAR623G0734' => 'tar', 'TAR625G0441' => 'tar', 'TAR629G0976' => 'tar', 'TAR633G1195' => 'tar', 'TAR636G2660' => 'tar', 'THA.LOC104799440' => 'tha', 'THA.LOC104800966' => 'tha', 'THA.LOC104806559' => 'tha', 'THA.LOC104810765' => 'tha', 'THA.LOC104816266' => 'tha', 'THA.LOC104817419' => 'tha', 'THA.LOC104827021' => 'tha', 'Thecc.01G327400' => 'tca', 'Thecc.04G229200' => 'tca', 'Thecc.05G037400' => 'tca', 'Thecc.09G318600' => 'tca', 'Thecc.09G318700' => 'tca', 'Thhalv10006238m.g' => 'esa', 'Thhalv10014321m.g' => 'esa', 'Thhalv10014335m.g' => 'esa', 'Thhalv10015826m.g' => 'esa', 'Thhalv10017107m.g' => 'esa', 'Thhalv10017180m.g' => 'esa', 'Thhalv10029339m.g' => 'esa', 'TPR.G1699' => 'tpr', 'TPR.G23609' => 'tpr', 'TPR.G3081' => 'tpr', 'TPR.G40397' => 'tpr', 'TPR.G5522' => 'tpr', 'TPR.G5618' => 'tpr', 'TPR.G5626' => 'tpr', 'TWI09G1632' => 'twi', 'TWI23G1230' => 'twi', 'TWI53G1064' => 'twi', 'TWI59G0751' => 'twi', 'TWI74G0947' => 'twi', 'TWI77G0337' => 'twi', 'TWI79G1254' => 'twi', 'unitig_0.g2341' => 'ugi', 'unitig_26.g10006' => 'ugi', 'unitig_26.g10008' => 'ugi', 'unitig_26.g9192' => 'ugi', 'vmacro14547' => 'vma', 'vmacro15333' => 'vma', 'vmacro18743' => 'vma', 'vmacro20166' => 'vma', 'VMungo0331G0523' => 'vmu', 'VMungo0331G1202' => 'vmu', 'VMungo0720G1228' => 'vmu', 'VMungo0720G1514' => 'vmu', 'VMungo1080G0169' => 'vmu', 'VMungo1127G1475' => 'vmu', 'VMungo1383G1208' => 'vmu', 'VMungo1383G1698' => 'vmu', 'Zm00001eb012270' => 'zma', 'Zm00001eb054100' => 'zma', 'Zm00001eb063350' => 'zma', 'Zm00001eb328560' => 'zma', 'Zm00001eb342820' => 'zma', 'Zm00001eb362210' => 'zma', 'Zm00001eb397730' => 'zma', 'Zm00001eb399750' => 'zma' ) $gf_id = 'HOM05D000959' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000959' ) $data_identifier = 'HOM05D000959' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 5, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 5, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 10, 'mbi' => (int) 3, 'mco' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 2, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 3, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 11, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399750' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000959', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '622', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p07100' => 'bna', 'A03p11720' => 'bna', 'A05p08300' => 'bna', 'A05p13380' => 'bna', 'A09p54130' => 'bna', 'A10p16690' => 'bna', 'A10p16700' => 'bna', 'A10p33390' => 'bna', 'Aa31LG10G16020' => 'aar', 'Aa31LG1G11810' => 'aar', 'Aa31LG1G11830' => 'aar', 'Aa31LG1G22510' => 'aar', 'Aa31LG5G4890' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5793' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2310' => 'aag', 'Actinidia08499' => 'ach', 'Actinidia11262' => 'ach', 'Actinidia23926' => 'ach', 'Actinidia34420' => 'ach', 'Actinidia36970' => 'ach', 'Ah.02g111220' => 'amhyb', 'Ah.15g097750' => 'amhyb', 'AL4G27500' => 'aly', 'AL6G11470' => 'aly', 'AL8G35950' => 'aly', 'AL8G35960' => 'aly', 'AL8G35970' => 'aly', 'Aqoxy1G00912' => 'aox', 'Aqoxy2G02253' => 'aox', 'Aqoxy2G02411' => 'aox', 'Aqoxy5G00485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BZ66YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K8ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM4FUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6BF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HFV7XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25JBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0YNNV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MAKK6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P70IT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP2Z6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V61LZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YWP64R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3S9AI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7PGHH' => 'arhy', 'AT2G32150' => 'ath', 'AT3G62040' => 'ath', 'AT5G02230' => 'ath', 'AT5G59480' => 'ath', 'AT5G59490' => 'ath', 'ATR0332G060' => 'atr', 'ATR0559G190' => 'atr', 'ATR0693G294' => 'atr', 'Atru.chr3.3975' => 'acertr', 'Atru.chr3.3976' => 'acertr', 'Atru.chr3.3977' => 'acertr', 'Atru.chr4.2498' => 'acertr', 'Atru.chr5.838' => 'acertr', 'Atru.chr8.1990' => 'acertr', 'Atru.chr8.1991' => 'acertr', 'Atru.chr8.1992' => 'acertr', 'AUR62001759' => 'cqu', 'AUR62009545' => 'cqu', 'AUR62010474' => 'cqu', 'AUR62025820' => 'cqu', 'AUR62030422' => 'cqu', 'AUR62033605' => 'cqu', 'AUR62038615' => 'cqu', 'AUR62041347' => 'cqu', 'BcaB01g04574' => 'bca', 'BcaB02g09263' => 'bca', 'BcaB02g10453' => 'bca', 'BcaB05g22513' => 'bca', 'BcaB08g36253' => 'bca', 'BcaB08g36254' => 'bca', 'BcaC01g06519' => 'bca', 'BcaC02g11889' => 'bca', 'BcaC03g14010' => 'bca', 'BcaC03g18439' => 'bca', 'BcaC04g19765' => 'bca', 'BcaC09g48432' => 'bca', 'BcaNung07302' => 'bca', 'BolC2t06040H' => 'bol', 'BolC2t07346H' => 'bol', 'BolC3t13817H' => 'bol', 'BolC4t22625H' => 'bol', 'BolC4t23297H' => 'bol', 'BolC8t51278H' => 'bol', 'BolC9t58050H' => 'bol', 'BolC9t58051H' => 'bol', 'BolC9t60163H' => 'bol', 'BraA02t04712Z' => 'bra', 'BraA02t05791Z' => 'bra', 'BraA03t10483Z' => 'bra', 'BraA05t19795Z' => 'bra', 'BraA05t20276Z' => 'bra', 'BraA09t40827Z' => 'bra', 'BraA10t43750Z' => 'bra', 'BraA10t43751Z' => 'bra', 'BraA10t45370Z' => 'bra', 'C02p00400' => 'bna', 'C02p12460' => 'bna', 'C03p13680' => 'bna', 'C04p10270' => 'bna', 'C04p17500' => 'bna', 'C08p37010' => 'bna', 'C09p51880' => 'bna', 'C09p51890' => 'bna', 'C09p74300' => 'bna', 'CAN.G179.26' => 'can', 'CAN.G3384.1' => 'can', 'CAN.G394.68' => 'can', 'CAN.G907.13' => 'can', 'CANSAT11G0012' => 'cansat', 'CANSAT25G1586' => 'cansat', 'CANSAT35G0735' => 'cansat', 'CANSAT54G0556' => 'cansat', 'CANSAT64G0356' => 'cansat', 'CANSAT78G2042' => 'cansat', 'CARHR125920' => 'chi', 'CARHR131910' => 'chi', 'CARHR172390' => 'chi', 'CARHR211140' => 'chi', 'CARHR285850' => 'chi', 'CARHR285860' => 'chi', 'Carub.0004s1347' => 'cru', 'Carub.0004s1960' => 'cru', 'Carub.0005s2880' => 'cru', 'Carub.0006s0107' => 'cru', 'Carub.0008s2015' => 'cru', 'Carub.0008s2016' => 'cru', 'Carub.0008s2017' => 'cru', 'Ca_01315_v3' => 'car', 'Ca_05063_v3' => 'car', 'Ca_10231_v3' => 'car', 'Ca_10913_v3' => 'car', 'Ca_19156_v3' => 'car', 'Ca_23644_v3' => 'car', 'Ca_26735_v3' => 'car', 'Cc01_g13130' => 'ccan', 'Cc02_g21690' => 'ccan', 'Cc03_g03600' => 'ccan', 'Cc06_g02510' => 'ccan', 'CDE02G1265' => 'cde', 'CDE05G0415' => 'cde', 'CDE08G1082' => 'cde', 'Cfa005780' => 'cfa', 'Cfa011522' => 'cfa', 'Cfa011523' => 'cfa', 'Cfa015627' => 'cfa', 'Cfa017359' => 'cfa', 'Ciclev10005687m.g' => 'ccl', 'Ciclev10012173m.g' => 'ccl', 'Ciclev10021621m.g' => 'ccl', 'Ciclev10028968m.g' => 'ccl', 'Ciclev10029907m.g' => 'ccl', 'CiPaw.01G164800' => 'cil', 'CiPaw.07G083700' => 'cil', 'CiPaw.07G127000' => 'cil', 'CiPaw.07G136900' => 'cil', 'CiPaw.08G081700' => 'cil', 'CiPaw.09G194600' => 'cil', 'CiPaw.10G146500' => 'cil', 'CiPaw.13G091500' => 'cil', 'CiPaw.13G091600' => 'cil', 'ClCG00G003390' => 'cla', 'ClCG01G007220' => 'cla', 'ClCG03G001370' => 'cla', 'ClCG04G008100' => 'cla', 'ClCG06G006110' => 'cla', 'ClCG06G006130' => 'cla', 'ClCG10G021210' => 'cla', 'COL.COLO4_07648' => 'col', 'COL.COLO4_07650' => 'col', 'COL.COLO4_07651' => 'col', 'COL.COLO4_14780' => 'col', 'COL.COLO4_18546' => 'col', 'COL.COLO4_18547' => 'col', 'COL.COLO4_23103' => 'col', 'COL.COLO4_30419' => 'col', 'COL.COLO4_34232' => 'col', 'Cpa.g.sc169.20' => 'cpa', 'Cpa.g.sc57.45' => 'cpa', 'Cpa.g.sc58.124' => 'cpa', 'Cpa.g.sc58.125' => 'cpa', 'Cpa.g.sc81.118' => 'cpa', 'Cpa.g.sc81.119' => 'cpa', 'Cre12.g524700' => 'cre', 'CsaV3_1G034430' => 'csa', 'CsaV3_1G034440' => 'csa', 'CsaV3_1G034450' => 'csa', 'CsaV3_3G034830' => 'csa', 'CsaV3_4G025090' => 'csa', 'CsaV3_5G018660' => 'csa', 'CsaV3_6G038160' => 'csa', 'CSS0003447' => 'camsi', 'CSS0017840' => 'camsi', 'CSS0019260' => 'camsi', 'CSS0040375' => 'camsi', 'CSS0042533' => 'camsi', 'DCAR_005960' => 'dca', 'DCAR_012104' => 'dca', 'DCAR_012105' => 'dca', 'DCAR_012293' => 'dca', 'DCAR_015632' => 'dca', 'DCAR_024602' => 'dca', 'DCAR_028752' => 'dca', 'Dinv06261' => 'din', 'Dinv13982' => 'din', 'Dinv17029' => 'din', 'Dinv18463' => 'din', 'Dinv33181' => 'din', 'Dinv35585' => 'din', 'Dinv37161' => 'din', 'Dinv42977' => 'din', 'Dinv43122' => 'din', 'Dinv44517' => 'din', 'Duzib093G0256' => 'dzi', 'Duzib106G1254' => 'dzi', 'Duzib128G1789' => 'dzi', 'Duzib133G0633' => 'dzi', 'Duzib138G0510' => 'dzi', 'Duzib150G1084' => 'dzi', 'Duzib168G0488' => 'dzi', 'Duzib168G1523' => 'dzi', 'Duzib170G0133' => 'dzi', 'ECA234G1433' => 'eca', 'ECA236G1432' => 'eca', 'ECA236G2256' => 'eca', 'ECA236G2365' => 'eca', 'ECA236G4830' => 'eca', 'ECA248G1505' => 'eca', 'EL10Ac3g06431' => 'bvu', 'EL10Ac5g12577' => 'bvu', 'EL10Ac6g13533' => 'bvu', 'EL10Ac7g16045' => 'bvu', 'Eucgr.A01281' => 'egr', 'Eucgr.B02326' => 'egr', 'Eucgr.H03532' => 'egr', 'Eucgr.K00553' => 'egr', 'Eucgr.K03116' => 'egr', 'FAN02G3963' => 'fan', 'FAN05G0438' => 'fan', 'FAN09G2434' => 'fan', 'FAN12G3984' => 'fan', 'FAN14G0798' => 'fan', 'FAN17G0652' => 'fan', 'FAN19G1988' => 'fan', 'FAN22G0632' => 'fan', 'FAN23G0387' => 'fan', 'FAN26G1323' => 'fan', 'FAN28G0666' => 'fan', 'FvH4_1g26080' => 'fve', 'FvH4_3g36780' => 'fve', 'FvH4_4g15270' => 'fve', 'FvH4_6g13490' => 'fve', 'Glyma.01G098700' => 'gma', 'Glyma.03G065900' => 'gma', 'Glyma.03G073754' => 'gma', 'Glyma.03G073758' => 'gma', 'Glyma.03G083200' => 'gma', 'Glyma.03G225500' => 'gma', 'Glyma.05G037766' => 'gma', 'Glyma.07G133500' => 'gma', 'Glyma.10G139400' => 'gma', 'Glyma.10G248900' => 'gma', 'Glyma.11G137800' => 'gma', 'Glyma.12G061300' => 'gma', 'Glyma.13G337900' => 'gma', 'Glyma.15G036600' => 'gma', 'Glyma.18G182800' => 'gma', 'Glyma.19G222500' => 'gma', 'Glyma.20G144800' => 'gma', 'Gohir.A01G222000' => 'ghi', 'Gohir.A03G044000' => 'ghi', 'Gohir.A03G044100' => 'ghi', 'Gohir.A04G083100' => 'ghi', 'Gohir.A07G127200' => 'ghi', 'Gohir.A07G132400' => 'ghi', 'Gohir.A08G000700' => 'ghi', 'Gohir.A11G327300' => 'ghi', 'Gohir.D01G211500' => 'ghi', 'Gohir.D03G123400' => 'ghi', 'Gohir.D03G123500' => 'ghi', 'Gohir.D04G121800' => 'ghi', 'Gohir.D07G131500' => 'ghi', 'Gohir.D07G136600' => 'ghi', 'Gohir.D08G011600' => 'ghi', 'Gohir.D11G346200' => 'ghi', 'Gorai.001G142800' => 'gra', 'Gorai.001G148700' => 'gra', 'Gorai.002G257300' => 'gra', 'Gorai.003G130000' => 'gra', 'Gorai.003G130100' => 'gra', 'Gorai.004G005300' => 'gra', 'Gorai.007G376500' => 'gra', 'Gorai.012G104700' => 'gra', 'GSVIVG01017946001' => 'vvi', 'GSVIVG01024928001' => 'vvi', 'GSVIVG01028227001' => 'vvi', 'GSVIVG01034151001' => 'vvi', 'HanXRQChr05g0135031' => 'han', 'HanXRQChr05g0135041' => 'han', 'HanXRQChr05g0140021' => 'han', 'HanXRQChr06g0178981' => 'han', 'HanXRQChr07g0188251' => 'han', 'HanXRQChr08g0235311' => 'han', 'HanXRQChr09g0271011' => 'han', 'HanXRQChr10g0293321' => 'han', 'HanXRQChr13g0388171' => 'han', 'Haze_00916' => 'cav', 'Haze_05063' => 'cav', 'Haze_20814' => 'cav', 'Haze_24128' => 'cav', 'Hma1.2p1_0745F.1_g212010' => 'hma', 'Hma1.2p1_0757F.1_g213260' => 'hma', 'Hma1.2p1_0936F.1_g238840' => 'hma', 'Hma1.2p1_1735F.1_g299890' => 'hma', 'Hma1.2p1_1861F.1_g305685' => 'hma', 'HPP92_003397' => 'vpl', 'HPP92_012597' => 'vpl', 'HPP92_015520' => 'vpl', 'HPP92_015539' => 'vpl', 'HPP92_020373' => 'vpl', 'Hund04938' => 'sun', 'Hund10677' => 'sun', 'Hund11033' => 'sun', 'Hund12155' => 'sun', 'Lalb_Chr01g0022551' => 'lal', 'Lalb_Chr03g0042341' => 'lal', 'Lalb_Chr07g0192931' => 'lal', 'Lalb_Chr12g0209551' => 'lal', 'Lalb_Chr19g0125251' => 'lal', 'Lalb_Chr19g0137891' => 'lal', 'Lalb_Chr21g0304641' => 'lal', 'Lalb_Chr21g0309881' => 'lal', 'Lj1A5T12' => 'lonja', 'Lj1C148G10' => 'lonja', 'Lj2A93T83' => 'lonja', 'Lj3A738G68' => 'lonja', 'Lj3C966T1' => 'lonja', 'Lj3g0018958' => 'lja', 'Lj3g0021831' => 'lja', 'Lj3g0025443' => 'lja', 'Lj4g0026809' => 'lja', 'Lj5g0012558' => 'lja', 'Lj5g0021586' => 'lja', 'Lsat_1_v5_gn_5_156840' => 'lsa', 'Lsat_1_v5_gn_8_73460' => 'lsa', 'Lsat_1_v5_gn_8_73481' => 'lsa', 'Lsat_1_v5_gn_9_31601' => 'lsa', 'Lsat_1_v5_gn_9_77320' => 'lsa', 'Manes.01G171300' => 'mes', 'Manes.01G171400' => 'mes', 'Manes.01G236100' => 'mes', 'Manes.02G130500' => 'mes', 'Manes.02G130600' => 'mes', 'Manes.03G180200' => 'mes', 'Manes.05G007000' => 'mes', 'Manes.08G084400' => 'mes', 'Manes.09G092600' => 'mes', 'Manes.15G027900' => 'mes', 'MBI04_g40948_MAGBIO' => 'mbi', 'MBI14_g12123_MAGBIO' => 'mbi', 'MBI18_g28915_MAGBIO' => 'mbi', 'MCO09G053' => 'mco', 'MCO11G782' => 'mco', 'MCO15G215' => 'mco', 'MD03G1088500' => 'mdo', 'MD03G1088600' => 'mdo', 'MD04G1130800' => 'mdo', 'MD09G1291700' => 'mdo', 'MD11G1097500' => 'mdo', 'MD11G1097600' => 'mdo', 'MD12G1143900' => 'mdo', 'MD13G1191400' => 'mdo', 'MD16G1191500' => 'mdo', 'Medtr1g085570' => 'mtr', 'Medtr1g104610' => 'mtr', 'Medtr2g097520' => 'mtr', 'Medtr4g021800' => 'mtr', 'Medtr4g021825' => 'mtr', 'Medtr4g064270' => 'mtr', 'Medtr4g064380' => 'mtr', 'Medtr7g062150' => 'mtr', 'MELO3C003138.2' => 'cme', 'MELO3C005187.2' => 'cme', 'MELO3C009252.2' => 'cme', 'MELO3C014481.2' => 'cme', 'MELO3C020616.2' => 'cme', 'MELO3C020617.2' => 'cme', 'MELO3C020618.2' => 'cme', 'Migut.G00328' => 'egut', 'Migut.J00320' => 'egut', 'Migut.L01000' => 'egut', 'Migut.L01953' => 'egut', 'MSTRG.10253' => 'ama', 'MSTRG.19077' => 'ama', 'MSTRG.26780' => 'ama', 'MSTRG.4023' => 'ama', 'MSTRG.5655' => 'ama', 'MSTRG.9992' => 'ama', 'Nitab4.5_0000043g0310' => 'nta', 'Nitab4.5_0000463g0080' => 'nta', 'Nitab4.5_0000705g0170' => 'nta', 'Nitab4.5_0001326g0060' => 'nta', 'Nitab4.5_0001628g0030' => 'nta', 'Nitab4.5_0002103g0110' => 'nta', 'Nitab4.5_0002946g0030' => 'nta', 'Nitab4.5_0004639g0030' => 'nta', 'Nn2g11149' => 'nnu', 'Nn2g13389' => 'nnu', 'Nn4g25326' => 'nnu', 'Nn4g26290' => 'nnu', 'Nn5g29865' => 'nnu', 'Oeu004163.1' => 'oeu', 'Oeu006901.1' => 'oeu', 'Oeu010096.1' => 'oeu', 'Oeu024340.1' => 'oeu', 'Oeu048369.1' => 'oeu', 'Os01g0973000' => 'osa', 'Os03g0273800' => 'osa', 'Os03g0701200' => 'osa', 'Os03g0834050' => 'osa', 'Os07g0634400' => 'osa', 'Peaxi162Scf00092g01414' => 'pax', 'Peaxi162Scf00165g00818' => 'pax', 'Peaxi162Scf00309g00516' => 'pax', 'Peaxi162Scf00774g00218' => 'pax', 'PGR004G1824' => 'pgr', 'PGR004G2606' => 'pgr', 'PGR031G2716' => 'pgr', 'PGR102G2460' => 'pgr', 'PGR142G2599' => 'pgr', 'PGSC0003DMG400000843' => 'stu', 'PGSC0003DMG400008829' => 'stu', 'PGSC0003DMG400030418' => 'stu', 'PGSC0003DMG400031834' => 'stu', 'PGSC0003DMG401028300' => 'stu', 'PGSC0003DMG402028300' => 'stu', 'Phvul.001G219300' => 'pvu', 'Phvul.007G056000' => 'pvu', 'Phvul.007G208000' => 'pvu', 'Phvul.008G119500' => 'pvu', 'Phvul.010G011200' => 'pvu', 'Phvul.010G014800' => 'pvu', 'Phvul.011G062900' => 'pvu', 'Phvul.L007043' => 'pvu', 'Potri.001G242300' => 'ptr', 'Potri.002G185300' => 'ptr', 'Potri.006G086900' => 'ptr', 'Potri.008G151700' => 'ptr', 'Potri.009G033500' => 'ptr', 'Potri.010G089300' => 'ptr', 'Potri.014G110800' => 'ptr', 'Pp3c27_8130' => 'ppa', 'Pp3c6_27410' => 'ppa', 'PRCOL_00001659' => 'pco', 'PRCOL_00001927' => 'pco', 'PRCOL_00003649' => 'pco', 'Prupe.1G011600' => 'ppe', 'Prupe.3G000800' => 'ppe', 'Prupe.3G001100' => 'ppe', 'Prupe.6G072700' => 'ppe', 'Prupe.6G072800' => 'ppe', 'Prupe.6G257300' => 'ppe', 'Prupe.8G033000' => 'ppe', 'Psat0s2633g0080' => 'psa', 'Psat0s3396g0080' => 'psa', 'Psat0s3396g0200' => 'psa', 'Psat3g139080' => 'psa', 'Psat5g285080' => 'psa', 'Psat6g157760' => 'psa', 'Psat6g208440' => 'psa', 'Psat7g215320' => 'psa', 'Psat7g215400' => 'psa', 'Psat7g235600' => 'psa', 'Psat7g235760' => 'psa', 'PSO063G4603' => 'pso', 'PSO210G0182' => 'pso', 'PSO210G0196' => 'pso', 'PSO339G0394' => 'pso', 'PSO339G4127' => 'pso', 'PSO513G0064' => 'pso', 'PSO761G0079' => 'pso', 'QL01p031003' => 'qlo', 'QL01p031078' => 'qlo', 'QL06p003004' => 'qlo', 'QL07p048731' => 'qlo', 'QL09p037427' => 'qlo', 'RcHm_v2.0_Chr3g0466361' => 'rch', 'RcHm_v2.0_Chr3g0485571' => 'rch', 'RcHm_v2.0_Chr4g0416551' => 'rch', 'RcHm_v2.0_Chr5g0065831' => 'rch', 'Rhsim01G0230500' => 'rsi', 'Rhsim05G0194000' => 'rsi', 'Rhsim08G0250400' => 'rsi', 'Sabra02G0131000' => 'sbr', 'Sabra06G0066300' => 'sbr', 'Sabra08G0115500' => 'sbr', 'Sabra09G0023900' => 'sbr', 'Sabra10G0054000' => 'sbr', 'Sabra14G0081500' => 'sbr', 'Sabra16G0147100' => 'sbr', 'SalBow2G2957' => 'sbo', 'SalBow4G3320' => 'sbo', 'SalBow8G1894' => 'sbo', 'Sc07g0007950' => 'sci', 'Sc12g0001360' => 'sci', 'Sc13g0004330' => 'sci', 'Sc20g0005010' => 'sci', 'Sed0000361' => 'sed', 'Sed0001706' => 'sed', 'Sed0002422' => 'sed', 'Sed0004029' => 'sed', 'Sed0004602' => 'sed', 'Sed0004943' => 'sed', 'Sed0008646' => 'sed', 'Sed0023313' => 'sed', 'Sed0024843' => 'sed', 'SEGI_00081' => 'sgi', 'SEGI_00947' => 'sgi', 'SEGI_04046' => 'sgi', 'SEGI_06880' => 'sgi', 'SEGI_09736' => 'sgi', 'SEGI_12741' => 'sgi', 'SEGI_14530' => 'sgi', 'SEGI_20705' => 'sgi', 'SEGI_26088' => 'sgi', 'SEGI_28323' => 'sgi', 'SEGI_33343' => 'sgi', 'SGA_v2.0_scaffold126G33775' => 'sas', 'SGA_v2.0_scaffold2G01337' => 'sas', 'SGA_v2.0_scaffold38G15006' => 'sas', 'SGA_v2.0_scaffold39G15264' => 'sas', 'SGA_v2.0_scaffold453G51880' => 'sas', 'SHI12696' => 'shi', 'SMO367G1096' => 'smo', 'Solyc01g068630.3' => 'sly', 'Solyc05g011880.3' => 'sly', 'Solyc06g076300.3' => 'sly', 'Solyc09g010940.4' => 'sly', 'Solyc09g075890.3' => 'sly', 'Sopen01g030560' => 'spe', 'Sopen05g006630' => 'spe', 'Sopen06g032720' => 'spe', 'Sopen09g005660' => 'spe', 'Sopen09g030690' => 'spe', 'Sp4g14540' => 'spa', 'Sp4g20030' => 'spa', 'Sp5g01320' => 'spa', 'Sp6g21170' => 'spa', 'Sp6g21180' => 'spa', 'Sp6g21190' => 'spa', 'Sp6g40220' => 'spa', 'TAR362G0122' => 'tar', 'TAR362G1338' => 'tar', 'TAR369G0590' => 'tar', 'TAR371G0824' => 'tar', 'TAR622G1429' => 'tar', 'TAR623G0734' => 'tar', 'TAR625G0441' => 'tar', 'TAR629G0976' => 'tar', 'TAR633G1195' => 'tar', 'TAR636G2660' => 'tar', 'THA.LOC104799440' => 'tha', 'THA.LOC104800966' => 'tha', 'THA.LOC104806559' => 'tha', 'THA.LOC104810765' => 'tha', 'THA.LOC104816266' => 'tha', 'THA.LOC104817419' => 'tha', 'THA.LOC104827021' => 'tha', 'Thecc.01G327400' => 'tca', 'Thecc.04G229200' => 'tca', 'Thecc.05G037400' => 'tca', 'Thecc.09G318600' => 'tca', 'Thecc.09G318700' => 'tca', 'Thhalv10006238m.g' => 'esa', 'Thhalv10014321m.g' => 'esa', 'Thhalv10014335m.g' => 'esa', 'Thhalv10015826m.g' => 'esa', 'Thhalv10017107m.g' => 'esa', 'Thhalv10017180m.g' => 'esa', 'Thhalv10029339m.g' => 'esa', 'TPR.G1699' => 'tpr', 'TPR.G23609' => 'tpr', 'TPR.G3081' => 'tpr', 'TPR.G40397' => 'tpr', 'TPR.G5522' => 'tpr', 'TPR.G5618' => 'tpr', 'TPR.G5626' => 'tpr', 'TWI09G1632' => 'twi', 'TWI23G1230' => 'twi', 'TWI53G1064' => 'twi', 'TWI59G0751' => 'twi', 'TWI74G0947' => 'twi', 'TWI77G0337' => 'twi', 'TWI79G1254' => 'twi', 'unitig_0.g2341' => 'ugi', 'unitig_26.g10006' => 'ugi', 'unitig_26.g10008' => 'ugi', 'unitig_26.g9192' => 'ugi', 'vmacro14547' => 'vma', 'vmacro15333' => 'vma', 'vmacro18743' => 'vma', 'vmacro20166' => 'vma', 'VMungo0331G0523' => 'vmu', 'VMungo0331G1202' => 'vmu', 'VMungo0720G1228' => 'vmu', 'VMungo0720G1514' => 'vmu', 'VMungo1080G0169' => 'vmu', 'VMungo1127G1475' => 'vmu', 'VMungo1383G1208' => 'vmu', 'VMungo1383G1698' => 'vmu', 'Zm00001eb012270' => 'zma', 'Zm00001eb054100' => 'zma', 'Zm00001eb063350' => 'zma', 'Zm00001eb328560' => 'zma', 'Zm00001eb342820' => 'zma', 'Zm00001eb362210' => 'zma', 'Zm00001eb397730' => 'zma', 'Zm00001eb399750' => 'zma' ), 'gf_id' => 'HOM05D000959', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000959' ), 'data_identifier' => 'HOM05D000959', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000959', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '622', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p07100' => 'bna', 'A03p11720' => 'bna', 'A05p08300' => 'bna', 'A05p13380' => 'bna', 'A09p54130' => 'bna', 'A10p16690' => 'bna', 'A10p16700' => 'bna', 'A10p33390' => 'bna', 'Aa31LG10G16020' => 'aar', 'Aa31LG1G11810' => 'aar', 'Aa31LG1G11830' => 'aar', 'Aa31LG1G22510' => 'aar', 'Aa31LG5G4890' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5793' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2310' => 'aag', 'Actinidia08499' => 'ach', 'Actinidia11262' => 'ach', 'Actinidia23926' => 'ach', 'Actinidia34420' => 'ach', 'Actinidia36970' => 'ach', 'Ah.02g111220' => 'amhyb', 'Ah.15g097750' => 'amhyb', 'AL4G27500' => 'aly', 'AL6G11470' => 'aly', 'AL8G35950' => 'aly', 'AL8G35960' => 'aly', 'AL8G35970' => 'aly', 'Aqoxy1G00912' => 'aox', 'Aqoxy2G02253' => 'aox', 'Aqoxy2G02411' => 'aox', 'Aqoxy5G00485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BZ66YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K8ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM4FUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6BF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HFV7XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25JBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0YNNV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MAKK6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P70IT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP2Z6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V61LZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YWP64R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3S9AI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7PGHH' => 'arhy', 'AT2G32150' => 'ath', 'AT3G62040' => 'ath', 'AT5G02230' => 'ath', 'AT5G59480' => 'ath', 'AT5G59490' => 'ath', 'ATR0332G060' => 'atr', 'ATR0559G190' => 'atr', 'ATR0693G294' => 'atr', 'Atru.chr3.3975' => 'acertr', 'Atru.chr3.3976' => 'acertr', 'Atru.chr3.3977' => 'acertr', 'Atru.chr4.2498' => 'acertr', 'Atru.chr5.838' => 'acertr', 'Atru.chr8.1990' => 'acertr', 'Atru.chr8.1991' => 'acertr', 'Atru.chr8.1992' => 'acertr', 'AUR62001759' => 'cqu', 'AUR62009545' => 'cqu', 'AUR62010474' => 'cqu', 'AUR62025820' => 'cqu', 'AUR62030422' => 'cqu', 'AUR62033605' => 'cqu', 'AUR62038615' => 'cqu', 'AUR62041347' => 'cqu', 'BcaB01g04574' => 'bca', 'BcaB02g09263' => 'bca', 'BcaB02g10453' => 'bca', 'BcaB05g22513' => 'bca', 'BcaB08g36253' => 'bca', 'BcaB08g36254' => 'bca', 'BcaC01g06519' => 'bca', 'BcaC02g11889' => 'bca', 'BcaC03g14010' => 'bca', 'BcaC03g18439' => 'bca', 'BcaC04g19765' => 'bca', 'BcaC09g48432' => 'bca', 'BcaNung07302' => 'bca', 'BolC2t06040H' => 'bol', 'BolC2t07346H' => 'bol', 'BolC3t13817H' => 'bol', 'BolC4t22625H' => 'bol', 'BolC4t23297H' => 'bol', 'BolC8t51278H' => 'bol', 'BolC9t58050H' => 'bol', 'BolC9t58051H' => 'bol', 'BolC9t60163H' => 'bol', 'BraA02t04712Z' => 'bra', 'BraA02t05791Z' => 'bra', 'BraA03t10483Z' => 'bra', 'BraA05t19795Z' => 'bra', 'BraA05t20276Z' => 'bra', 'BraA09t40827Z' => 'bra', 'BraA10t43750Z' => 'bra', 'BraA10t43751Z' => 'bra', 'BraA10t45370Z' => 'bra', 'C02p00400' => 'bna', 'C02p12460' => 'bna', 'C03p13680' => 'bna', 'C04p10270' => 'bna', 'C04p17500' => 'bna', 'C08p37010' => 'bna', 'C09p51880' => 'bna', 'C09p51890' => 'bna', 'C09p74300' => 'bna', 'CAN.G179.26' => 'can', 'CAN.G3384.1' => 'can', 'CAN.G394.68' => 'can', 'CAN.G907.13' => 'can', 'CANSAT11G0012' => 'cansat', 'CANSAT25G1586' => 'cansat', 'CANSAT35G0735' => 'cansat', 'CANSAT54G0556' => 'cansat', 'CANSAT64G0356' => 'cansat', 'CANSAT78G2042' => 'cansat', 'CARHR125920' => 'chi', 'CARHR131910' => 'chi', 'CARHR172390' => 'chi', 'CARHR211140' => 'chi', 'CARHR285850' => 'chi', 'CARHR285860' => 'chi', 'Carub.0004s1347' => 'cru', 'Carub.0004s1960' => 'cru', 'Carub.0005s2880' => 'cru', 'Carub.0006s0107' => 'cru', 'Carub.0008s2015' => 'cru', 'Carub.0008s2016' => 'cru', 'Carub.0008s2017' => 'cru', 'Ca_01315_v3' => 'car', 'Ca_05063_v3' => 'car', 'Ca_10231_v3' => 'car', 'Ca_10913_v3' => 'car', 'Ca_19156_v3' => 'car', 'Ca_23644_v3' => 'car', 'Ca_26735_v3' => 'car', 'Cc01_g13130' => 'ccan', 'Cc02_g21690' => 'ccan', 'Cc03_g03600' => 'ccan', 'Cc06_g02510' => 'ccan', 'CDE02G1265' => 'cde', 'CDE05G0415' => 'cde', 'CDE08G1082' => 'cde', 'Cfa005780' => 'cfa', 'Cfa011522' => 'cfa', 'Cfa011523' => 'cfa', 'Cfa015627' => 'cfa', 'Cfa017359' => 'cfa', 'Ciclev10005687m.g' => 'ccl', 'Ciclev10012173m.g' => 'ccl', 'Ciclev10021621m.g' => 'ccl', 'Ciclev10028968m.g' => 'ccl', 'Ciclev10029907m.g' => 'ccl', 'CiPaw.01G164800' => 'cil', 'CiPaw.07G083700' => 'cil', 'CiPaw.07G127000' => 'cil', 'CiPaw.07G136900' => 'cil', 'CiPaw.08G081700' => 'cil', 'CiPaw.09G194600' => 'cil', 'CiPaw.10G146500' => 'cil', 'CiPaw.13G091500' => 'cil', 'CiPaw.13G091600' => 'cil', 'ClCG00G003390' => 'cla', 'ClCG01G007220' => 'cla', 'ClCG03G001370' => 'cla', 'ClCG04G008100' => 'cla', 'ClCG06G006110' => 'cla', 'ClCG06G006130' => 'cla', 'ClCG10G021210' => 'cla', 'COL.COLO4_07648' => 'col', 'COL.COLO4_07650' => 'col', 'COL.COLO4_07651' => 'col', 'COL.COLO4_14780' => 'col', 'COL.COLO4_18546' => 'col', 'COL.COLO4_18547' => 'col', 'COL.COLO4_23103' => 'col', 'COL.COLO4_30419' => 'col', 'COL.COLO4_34232' => 'col', 'Cpa.g.sc169.20' => 'cpa', 'Cpa.g.sc57.45' => 'cpa', 'Cpa.g.sc58.124' => 'cpa', 'Cpa.g.sc58.125' => 'cpa', 'Cpa.g.sc81.118' => 'cpa', 'Cpa.g.sc81.119' => 'cpa', 'Cre12.g524700' => 'cre', 'CsaV3_1G034430' => 'csa', 'CsaV3_1G034440' => 'csa', 'CsaV3_1G034450' => 'csa', 'CsaV3_3G034830' => 'csa', 'CsaV3_4G025090' => 'csa', 'CsaV3_5G018660' => 'csa', 'CsaV3_6G038160' => 'csa', 'CSS0003447' => 'camsi', 'CSS0017840' => 'camsi', 'CSS0019260' => 'camsi', 'CSS0040375' => 'camsi', 'CSS0042533' => 'camsi', 'DCAR_005960' => 'dca', 'DCAR_012104' => 'dca', 'DCAR_012105' => 'dca', 'DCAR_012293' => 'dca', 'DCAR_015632' => 'dca', 'DCAR_024602' => 'dca', 'DCAR_028752' => 'dca', 'Dinv06261' => 'din', 'Dinv13982' => 'din', 'Dinv17029' => 'din', 'Dinv18463' => 'din', 'Dinv33181' => 'din', 'Dinv35585' => 'din', 'Dinv37161' => 'din', 'Dinv42977' => 'din', 'Dinv43122' => 'din', 'Dinv44517' => 'din', 'Duzib093G0256' => 'dzi', 'Duzib106G1254' => 'dzi', 'Duzib128G1789' => 'dzi', 'Duzib133G0633' => 'dzi', 'Duzib138G0510' => 'dzi', 'Duzib150G1084' => 'dzi', 'Duzib168G0488' => 'dzi', 'Duzib168G1523' => 'dzi', 'Duzib170G0133' => 'dzi', 'ECA234G1433' => 'eca', 'ECA236G1432' => 'eca', 'ECA236G2256' => 'eca', 'ECA236G2365' => 'eca', 'ECA236G4830' => 'eca', 'ECA248G1505' => 'eca', 'EL10Ac3g06431' => 'bvu', 'EL10Ac5g12577' => 'bvu', 'EL10Ac6g13533' => 'bvu', 'EL10Ac7g16045' => 'bvu', 'Eucgr.A01281' => 'egr', 'Eucgr.B02326' => 'egr', 'Eucgr.H03532' => 'egr', 'Eucgr.K00553' => 'egr', 'Eucgr.K03116' => 'egr', 'FAN02G3963' => 'fan', 'FAN05G0438' => 'fan', 'FAN09G2434' => 'fan', 'FAN12G3984' => 'fan', 'FAN14G0798' => 'fan', 'FAN17G0652' => 'fan', 'FAN19G1988' => 'fan', 'FAN22G0632' => 'fan', 'FAN23G0387' => 'fan', 'FAN26G1323' => 'fan', 'FAN28G0666' => 'fan', 'FvH4_1g26080' => 'fve', 'FvH4_3g36780' => 'fve', 'FvH4_4g15270' => 'fve', 'FvH4_6g13490' => 'fve', 'Glyma.01G098700' => 'gma', 'Glyma.03G065900' => 'gma', 'Glyma.03G073754' => 'gma', 'Glyma.03G073758' => 'gma', 'Glyma.03G083200' => 'gma', 'Glyma.03G225500' => 'gma', 'Glyma.05G037766' => 'gma', 'Glyma.07G133500' => 'gma', 'Glyma.10G139400' => 'gma', 'Glyma.10G248900' => 'gma', 'Glyma.11G137800' => 'gma', 'Glyma.12G061300' => 'gma', 'Glyma.13G337900' => 'gma', 'Glyma.15G036600' => 'gma', 'Glyma.18G182800' => 'gma', 'Glyma.19G222500' => 'gma', 'Glyma.20G144800' => 'gma', 'Gohir.A01G222000' => 'ghi', 'Gohir.A03G044000' => 'ghi', 'Gohir.A03G044100' => 'ghi', 'Gohir.A04G083100' => 'ghi', 'Gohir.A07G127200' => 'ghi', 'Gohir.A07G132400' => 'ghi', 'Gohir.A08G000700' => 'ghi', 'Gohir.A11G327300' => 'ghi', 'Gohir.D01G211500' => 'ghi', 'Gohir.D03G123400' => 'ghi', 'Gohir.D03G123500' => 'ghi', 'Gohir.D04G121800' => 'ghi', 'Gohir.D07G131500' => 'ghi', 'Gohir.D07G136600' => 'ghi', 'Gohir.D08G011600' => 'ghi', 'Gohir.D11G346200' => 'ghi', 'Gorai.001G142800' => 'gra', 'Gorai.001G148700' => 'gra', 'Gorai.002G257300' => 'gra', 'Gorai.003G130000' => 'gra', 'Gorai.003G130100' => 'gra', 'Gorai.004G005300' => 'gra', 'Gorai.007G376500' => 'gra', 'Gorai.012G104700' => 'gra', 'GSVIVG01017946001' => 'vvi', 'GSVIVG01024928001' => 'vvi', 'GSVIVG01028227001' => 'vvi', 'GSVIVG01034151001' => 'vvi', 'HanXRQChr05g0135031' => 'han', 'HanXRQChr05g0135041' => 'han', 'HanXRQChr05g0140021' => 'han', 'HanXRQChr06g0178981' => 'han', 'HanXRQChr07g0188251' => 'han', 'HanXRQChr08g0235311' => 'han', 'HanXRQChr09g0271011' => 'han', 'HanXRQChr10g0293321' => 'han', 'HanXRQChr13g0388171' => 'han', 'Haze_00916' => 'cav', 'Haze_05063' => 'cav', 'Haze_20814' => 'cav', 'Haze_24128' => 'cav', 'Hma1.2p1_0745F.1_g212010' => 'hma', 'Hma1.2p1_0757F.1_g213260' => 'hma', 'Hma1.2p1_0936F.1_g238840' => 'hma', 'Hma1.2p1_1735F.1_g299890' => 'hma', 'Hma1.2p1_1861F.1_g305685' => 'hma', 'HPP92_003397' => 'vpl', 'HPP92_012597' => 'vpl', 'HPP92_015520' => 'vpl', 'HPP92_015539' => 'vpl', 'HPP92_020373' => 'vpl', 'Hund04938' => 'sun', 'Hund10677' => 'sun', 'Hund11033' => 'sun', 'Hund12155' => 'sun', 'Lalb_Chr01g0022551' => 'lal', 'Lalb_Chr03g0042341' => 'lal', 'Lalb_Chr07g0192931' => 'lal', 'Lalb_Chr12g0209551' => 'lal', 'Lalb_Chr19g0125251' => 'lal', 'Lalb_Chr19g0137891' => 'lal', 'Lalb_Chr21g0304641' => 'lal', 'Lalb_Chr21g0309881' => 'lal', 'Lj1A5T12' => 'lonja', 'Lj1C148G10' => 'lonja', 'Lj2A93T83' => 'lonja', 'Lj3A738G68' => 'lonja', 'Lj3C966T1' => 'lonja', 'Lj3g0018958' => 'lja', 'Lj3g0021831' => 'lja', 'Lj3g0025443' => 'lja', 'Lj4g0026809' => 'lja', 'Lj5g0012558' => 'lja', 'Lj5g0021586' => 'lja', 'Lsat_1_v5_gn_5_156840' => 'lsa', 'Lsat_1_v5_gn_8_73460' => 'lsa', 'Lsat_1_v5_gn_8_73481' => 'lsa', 'Lsat_1_v5_gn_9_31601' => 'lsa', 'Lsat_1_v5_gn_9_77320' => 'lsa', 'Manes.01G171300' => 'mes', 'Manes.01G171400' => 'mes', 'Manes.01G236100' => 'mes', 'Manes.02G130500' => 'mes', 'Manes.02G130600' => 'mes', 'Manes.03G180200' => 'mes', 'Manes.05G007000' => 'mes', 'Manes.08G084400' => 'mes', 'Manes.09G092600' => 'mes', 'Manes.15G027900' => 'mes', 'MBI04_g40948_MAGBIO' => 'mbi', 'MBI14_g12123_MAGBIO' => 'mbi', 'MBI18_g28915_MAGBIO' => 'mbi', 'MCO09G053' => 'mco', 'MCO11G782' => 'mco', 'MCO15G215' => 'mco', 'MD03G1088500' => 'mdo', 'MD03G1088600' => 'mdo', 'MD04G1130800' => 'mdo', 'MD09G1291700' => 'mdo', 'MD11G1097500' => 'mdo', 'MD11G1097600' => 'mdo', 'MD12G1143900' => 'mdo', 'MD13G1191400' => 'mdo', 'MD16G1191500' => 'mdo', 'Medtr1g085570' => 'mtr', 'Medtr1g104610' => 'mtr', 'Medtr2g097520' => 'mtr', 'Medtr4g021800' => 'mtr', 'Medtr4g021825' => 'mtr', 'Medtr4g064270' => 'mtr', 'Medtr4g064380' => 'mtr', 'Medtr7g062150' => 'mtr', 'MELO3C003138.2' => 'cme', 'MELO3C005187.2' => 'cme', 'MELO3C009252.2' => 'cme', 'MELO3C014481.2' => 'cme', 'MELO3C020616.2' => 'cme', 'MELO3C020617.2' => 'cme', 'MELO3C020618.2' => 'cme', 'Migut.G00328' => 'egut', 'Migut.J00320' => 'egut', 'Migut.L01000' => 'egut', 'Migut.L01953' => 'egut', 'MSTRG.10253' => 'ama', 'MSTRG.19077' => 'ama', 'MSTRG.26780' => 'ama', 'MSTRG.4023' => 'ama', 'MSTRG.5655' => 'ama', 'MSTRG.9992' => 'ama', 'Nitab4.5_0000043g0310' => 'nta', 'Nitab4.5_0000463g0080' => 'nta', 'Nitab4.5_0000705g0170' => 'nta', 'Nitab4.5_0001326g0060' => 'nta', 'Nitab4.5_0001628g0030' => 'nta', 'Nitab4.5_0002103g0110' => 'nta', 'Nitab4.5_0002946g0030' => 'nta', 'Nitab4.5_0004639g0030' => 'nta', 'Nn2g11149' => 'nnu', 'Nn2g13389' => 'nnu', 'Nn4g25326' => 'nnu', 'Nn4g26290' => 'nnu', 'Nn5g29865' => 'nnu', 'Oeu004163.1' => 'oeu', 'Oeu006901.1' => 'oeu', 'Oeu010096.1' => 'oeu', 'Oeu024340.1' => 'oeu', 'Oeu048369.1' => 'oeu', 'Os01g0973000' => 'osa', 'Os03g0273800' => 'osa', 'Os03g0701200' => 'osa', 'Os03g0834050' => 'osa', 'Os07g0634400' => 'osa', 'Peaxi162Scf00092g01414' => 'pax', 'Peaxi162Scf00165g00818' => 'pax', 'Peaxi162Scf00309g00516' => 'pax', 'Peaxi162Scf00774g00218' => 'pax', 'PGR004G1824' => 'pgr', 'PGR004G2606' => 'pgr', 'PGR031G2716' => 'pgr', 'PGR102G2460' => 'pgr', 'PGR142G2599' => 'pgr', 'PGSC0003DMG400000843' => 'stu', 'PGSC0003DMG400008829' => 'stu', 'PGSC0003DMG400030418' => 'stu', 'PGSC0003DMG400031834' => 'stu', 'PGSC0003DMG401028300' => 'stu', 'PGSC0003DMG402028300' => 'stu', 'Phvul.001G219300' => 'pvu', 'Phvul.007G056000' => 'pvu', 'Phvul.007G208000' => 'pvu', 'Phvul.008G119500' => 'pvu', 'Phvul.010G011200' => 'pvu', 'Phvul.010G014800' => 'pvu', 'Phvul.011G062900' => 'pvu', 'Phvul.L007043' => 'pvu', 'Potri.001G242300' => 'ptr', 'Potri.002G185300' => 'ptr', 'Potri.006G086900' => 'ptr', 'Potri.008G151700' => 'ptr', 'Potri.009G033500' => 'ptr', 'Potri.010G089300' => 'ptr', 'Potri.014G110800' => 'ptr', 'Pp3c27_8130' => 'ppa', 'Pp3c6_27410' => 'ppa', 'PRCOL_00001659' => 'pco', 'PRCOL_00001927' => 'pco', 'PRCOL_00003649' => 'pco', 'Prupe.1G011600' => 'ppe', 'Prupe.3G000800' => 'ppe', 'Prupe.3G001100' => 'ppe', 'Prupe.6G072700' => 'ppe', 'Prupe.6G072800' => 'ppe', 'Prupe.6G257300' => 'ppe', 'Prupe.8G033000' => 'ppe', 'Psat0s2633g0080' => 'psa', 'Psat0s3396g0080' => 'psa', 'Psat0s3396g0200' => 'psa', 'Psat3g139080' => 'psa', 'Psat5g285080' => 'psa', 'Psat6g157760' => 'psa', 'Psat6g208440' => 'psa', 'Psat7g215320' => 'psa', 'Psat7g215400' => 'psa', 'Psat7g235600' => 'psa', 'Psat7g235760' => 'psa', 'PSO063G4603' => 'pso', 'PSO210G0182' => 'pso', 'PSO210G0196' => 'pso', 'PSO339G0394' => 'pso', 'PSO339G4127' => 'pso', 'PSO513G0064' => 'pso', 'PSO761G0079' => 'pso', 'QL01p031003' => 'qlo', 'QL01p031078' => 'qlo', 'QL06p003004' => 'qlo', 'QL07p048731' => 'qlo', 'QL09p037427' => 'qlo', 'RcHm_v2.0_Chr3g0466361' => 'rch', 'RcHm_v2.0_Chr3g0485571' => 'rch', 'RcHm_v2.0_Chr4g0416551' => 'rch', 'RcHm_v2.0_Chr5g0065831' => 'rch', 'Rhsim01G0230500' => 'rsi', 'Rhsim05G0194000' => 'rsi', 'Rhsim08G0250400' => 'rsi', 'Sabra02G0131000' => 'sbr', 'Sabra06G0066300' => 'sbr', 'Sabra08G0115500' => 'sbr', 'Sabra09G0023900' => 'sbr', 'Sabra10G0054000' => 'sbr', 'Sabra14G0081500' => 'sbr', 'Sabra16G0147100' => 'sbr', 'SalBow2G2957' => 'sbo', 'SalBow4G3320' => 'sbo', 'SalBow8G1894' => 'sbo', 'Sc07g0007950' => 'sci', 'Sc12g0001360' => 'sci', 'Sc13g0004330' => 'sci', 'Sc20g0005010' => 'sci', 'Sed0000361' => 'sed', 'Sed0001706' => 'sed', 'Sed0002422' => 'sed', 'Sed0004029' => 'sed', 'Sed0004602' => 'sed', 'Sed0004943' => 'sed', 'Sed0008646' => 'sed', 'Sed0023313' => 'sed', 'Sed0024843' => 'sed', 'SEGI_00081' => 'sgi', 'SEGI_00947' => 'sgi', 'SEGI_04046' => 'sgi', 'SEGI_06880' => 'sgi', 'SEGI_09736' => 'sgi', 'SEGI_12741' => 'sgi', 'SEGI_14530' => 'sgi', 'SEGI_20705' => 'sgi', 'SEGI_26088' => 'sgi', 'SEGI_28323' => 'sgi', 'SEGI_33343' => 'sgi', 'SGA_v2.0_scaffold126G33775' => 'sas', 'SGA_v2.0_scaffold2G01337' => 'sas', 'SGA_v2.0_scaffold38G15006' => 'sas', 'SGA_v2.0_scaffold39G15264' => 'sas', 'SGA_v2.0_scaffold453G51880' => 'sas', 'SHI12696' => 'shi', 'SMO367G1096' => 'smo', 'Solyc01g068630.3' => 'sly', 'Solyc05g011880.3' => 'sly', 'Solyc06g076300.3' => 'sly', 'Solyc09g010940.4' => 'sly', 'Solyc09g075890.3' => 'sly', 'Sopen01g030560' => 'spe', 'Sopen05g006630' => 'spe', 'Sopen06g032720' => 'spe', 'Sopen09g005660' => 'spe', 'Sopen09g030690' => 'spe', 'Sp4g14540' => 'spa', 'Sp4g20030' => 'spa', 'Sp5g01320' => 'spa', 'Sp6g21170' => 'spa', 'Sp6g21180' => 'spa', 'Sp6g21190' => 'spa', 'Sp6g40220' => 'spa', 'TAR362G0122' => 'tar', 'TAR362G1338' => 'tar', 'TAR369G0590' => 'tar', 'TAR371G0824' => 'tar', 'TAR622G1429' => 'tar', 'TAR623G0734' => 'tar', 'TAR625G0441' => 'tar', 'TAR629G0976' => 'tar', 'TAR633G1195' => 'tar', 'TAR636G2660' => 'tar', 'THA.LOC104799440' => 'tha', 'THA.LOC104800966' => 'tha', 'THA.LOC104806559' => 'tha', 'THA.LOC104810765' => 'tha', 'THA.LOC104816266' => 'tha', 'THA.LOC104817419' => 'tha', 'THA.LOC104827021' => 'tha', 'Thecc.01G327400' => 'tca', 'Thecc.04G229200' => 'tca', 'Thecc.05G037400' => 'tca', 'Thecc.09G318600' => 'tca', 'Thecc.09G318700' => 'tca', 'Thhalv10006238m.g' => 'esa', 'Thhalv10014321m.g' => 'esa', 'Thhalv10014335m.g' => 'esa', 'Thhalv10015826m.g' => 'esa', 'Thhalv10017107m.g' => 'esa', 'Thhalv10017180m.g' => 'esa', 'Thhalv10029339m.g' => 'esa', 'TPR.G1699' => 'tpr', 'TPR.G23609' => 'tpr', 'TPR.G3081' => 'tpr', 'TPR.G40397' => 'tpr', 'TPR.G5522' => 'tpr', 'TPR.G5618' => 'tpr', 'TPR.G5626' => 'tpr', 'TWI09G1632' => 'twi', 'TWI23G1230' => 'twi', 'TWI53G1064' => 'twi', 'TWI59G0751' => 'twi', 'TWI74G0947' => 'twi', 'TWI77G0337' => 'twi', 'TWI79G1254' => 'twi', 'unitig_0.g2341' => 'ugi', 'unitig_26.g10006' => 'ugi', 'unitig_26.g10008' => 'ugi', 'unitig_26.g9192' => 'ugi', 'vmacro14547' => 'vma', 'vmacro15333' => 'vma', 'vmacro18743' => 'vma', 'vmacro20166' => 'vma', 'VMungo0331G0523' => 'vmu', 'VMungo0331G1202' => 'vmu', 'VMungo0720G1228' => 'vmu', 'VMungo0720G1514' => 'vmu', 'VMungo1080G0169' => 'vmu', 'VMungo1127G1475' => 'vmu', 'VMungo1383G1208' => 'vmu', 'VMungo1383G1698' => 'vmu', 'Zm00001eb012270' => 'zma', 'Zm00001eb054100' => 'zma', 'Zm00001eb063350' => 'zma', 'Zm00001eb328560' => 'zma', 'Zm00001eb342820' => 'zma', 'Zm00001eb362210' => 'zma', 'Zm00001eb397730' => 'zma', 'Zm00001eb399750' => 'zma' ) $gf_id = 'HOM05D000959' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000959' ) $data_identifier = 'HOM05D000959' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 5, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 5, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 10, 'mbi' => (int) 3, 'mco' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 2, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 3, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 11, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399750' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000959', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '622', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p07100' => 'bna', 'A03p11720' => 'bna', 'A05p08300' => 'bna', 'A05p13380' => 'bna', 'A09p54130' => 'bna', 'A10p16690' => 'bna', 'A10p16700' => 'bna', 'A10p33390' => 'bna', 'Aa31LG10G16020' => 'aar', 'Aa31LG1G11810' => 'aar', 'Aa31LG1G11830' => 'aar', 'Aa31LG1G22510' => 'aar', 'Aa31LG5G4890' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5793' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2310' => 'aag', 'Actinidia08499' => 'ach', 'Actinidia11262' => 'ach', 'Actinidia23926' => 'ach', 'Actinidia34420' => 'ach', 'Actinidia36970' => 'ach', 'Ah.02g111220' => 'amhyb', 'Ah.15g097750' => 'amhyb', 'AL4G27500' => 'aly', 'AL6G11470' => 'aly', 'AL8G35950' => 'aly', 'AL8G35960' => 'aly', 'AL8G35970' => 'aly', 'Aqoxy1G00912' => 'aox', 'Aqoxy2G02253' => 'aox', 'Aqoxy2G02411' => 'aox', 'Aqoxy5G00485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BZ66YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K8ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM4FUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6BF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HFV7XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25JBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0YNNV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MAKK6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P70IT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP2Z6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V61LZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YWP64R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3S9AI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7PGHH' => 'arhy', 'AT2G32150' => 'ath', 'AT3G62040' => 'ath', 'AT5G02230' => 'ath', 'AT5G59480' => 'ath', 'AT5G59490' => 'ath', 'ATR0332G060' => 'atr', 'ATR0559G190' => 'atr', 'ATR0693G294' => 'atr', 'Atru.chr3.3975' => 'acertr', 'Atru.chr3.3976' => 'acertr', 'Atru.chr3.3977' => 'acertr', 'Atru.chr4.2498' => 'acertr', 'Atru.chr5.838' => 'acertr', 'Atru.chr8.1990' => 'acertr', 'Atru.chr8.1991' => 'acertr', 'Atru.chr8.1992' => 'acertr', 'AUR62001759' => 'cqu', 'AUR62009545' => 'cqu', 'AUR62010474' => 'cqu', 'AUR62025820' => 'cqu', 'AUR62030422' => 'cqu', 'AUR62033605' => 'cqu', 'AUR62038615' => 'cqu', 'AUR62041347' => 'cqu', 'BcaB01g04574' => 'bca', 'BcaB02g09263' => 'bca', 'BcaB02g10453' => 'bca', 'BcaB05g22513' => 'bca', 'BcaB08g36253' => 'bca', 'BcaB08g36254' => 'bca', 'BcaC01g06519' => 'bca', 'BcaC02g11889' => 'bca', 'BcaC03g14010' => 'bca', 'BcaC03g18439' => 'bca', 'BcaC04g19765' => 'bca', 'BcaC09g48432' => 'bca', 'BcaNung07302' => 'bca', 'BolC2t06040H' => 'bol', 'BolC2t07346H' => 'bol', 'BolC3t13817H' => 'bol', 'BolC4t22625H' => 'bol', 'BolC4t23297H' => 'bol', 'BolC8t51278H' => 'bol', 'BolC9t58050H' => 'bol', 'BolC9t58051H' => 'bol', 'BolC9t60163H' => 'bol', 'BraA02t04712Z' => 'bra', 'BraA02t05791Z' => 'bra', 'BraA03t10483Z' => 'bra', 'BraA05t19795Z' => 'bra', 'BraA05t20276Z' => 'bra', 'BraA09t40827Z' => 'bra', 'BraA10t43750Z' => 'bra', 'BraA10t43751Z' => 'bra', 'BraA10t45370Z' => 'bra', 'C02p00400' => 'bna', 'C02p12460' => 'bna', 'C03p13680' => 'bna', 'C04p10270' => 'bna', 'C04p17500' => 'bna', 'C08p37010' => 'bna', 'C09p51880' => 'bna', 'C09p51890' => 'bna', 'C09p74300' => 'bna', 'CAN.G179.26' => 'can', 'CAN.G3384.1' => 'can', 'CAN.G394.68' => 'can', 'CAN.G907.13' => 'can', 'CANSAT11G0012' => 'cansat', 'CANSAT25G1586' => 'cansat', 'CANSAT35G0735' => 'cansat', 'CANSAT54G0556' => 'cansat', 'CANSAT64G0356' => 'cansat', 'CANSAT78G2042' => 'cansat', 'CARHR125920' => 'chi', 'CARHR131910' => 'chi', 'CARHR172390' => 'chi', 'CARHR211140' => 'chi', 'CARHR285850' => 'chi', 'CARHR285860' => 'chi', 'Carub.0004s1347' => 'cru', 'Carub.0004s1960' => 'cru', 'Carub.0005s2880' => 'cru', 'Carub.0006s0107' => 'cru', 'Carub.0008s2015' => 'cru', 'Carub.0008s2016' => 'cru', 'Carub.0008s2017' => 'cru', 'Ca_01315_v3' => 'car', 'Ca_05063_v3' => 'car', 'Ca_10231_v3' => 'car', 'Ca_10913_v3' => 'car', 'Ca_19156_v3' => 'car', 'Ca_23644_v3' => 'car', 'Ca_26735_v3' => 'car', 'Cc01_g13130' => 'ccan', 'Cc02_g21690' => 'ccan', 'Cc03_g03600' => 'ccan', 'Cc06_g02510' => 'ccan', 'CDE02G1265' => 'cde', 'CDE05G0415' => 'cde', 'CDE08G1082' => 'cde', 'Cfa005780' => 'cfa', 'Cfa011522' => 'cfa', 'Cfa011523' => 'cfa', 'Cfa015627' => 'cfa', 'Cfa017359' => 'cfa', 'Ciclev10005687m.g' => 'ccl', 'Ciclev10012173m.g' => 'ccl', 'Ciclev10021621m.g' => 'ccl', 'Ciclev10028968m.g' => 'ccl', 'Ciclev10029907m.g' => 'ccl', 'CiPaw.01G164800' => 'cil', 'CiPaw.07G083700' => 'cil', 'CiPaw.07G127000' => 'cil', 'CiPaw.07G136900' => 'cil', 'CiPaw.08G081700' => 'cil', 'CiPaw.09G194600' => 'cil', 'CiPaw.10G146500' => 'cil', 'CiPaw.13G091500' => 'cil', 'CiPaw.13G091600' => 'cil', 'ClCG00G003390' => 'cla', 'ClCG01G007220' => 'cla', 'ClCG03G001370' => 'cla', 'ClCG04G008100' => 'cla', 'ClCG06G006110' => 'cla', 'ClCG06G006130' => 'cla', 'ClCG10G021210' => 'cla', 'COL.COLO4_07648' => 'col', 'COL.COLO4_07650' => 'col', 'COL.COLO4_07651' => 'col', 'COL.COLO4_14780' => 'col', 'COL.COLO4_18546' => 'col', 'COL.COLO4_18547' => 'col', 'COL.COLO4_23103' => 'col', 'COL.COLO4_30419' => 'col', 'COL.COLO4_34232' => 'col', 'Cpa.g.sc169.20' => 'cpa', 'Cpa.g.sc57.45' => 'cpa', 'Cpa.g.sc58.124' => 'cpa', 'Cpa.g.sc58.125' => 'cpa', 'Cpa.g.sc81.118' => 'cpa', 'Cpa.g.sc81.119' => 'cpa', 'Cre12.g524700' => 'cre', 'CsaV3_1G034430' => 'csa', 'CsaV3_1G034440' => 'csa', 'CsaV3_1G034450' => 'csa', 'CsaV3_3G034830' => 'csa', 'CsaV3_4G025090' => 'csa', 'CsaV3_5G018660' => 'csa', 'CsaV3_6G038160' => 'csa', 'CSS0003447' => 'camsi', 'CSS0017840' => 'camsi', 'CSS0019260' => 'camsi', 'CSS0040375' => 'camsi', 'CSS0042533' => 'camsi', 'DCAR_005960' => 'dca', 'DCAR_012104' => 'dca', 'DCAR_012105' => 'dca', 'DCAR_012293' => 'dca', 'DCAR_015632' => 'dca', 'DCAR_024602' => 'dca', 'DCAR_028752' => 'dca', 'Dinv06261' => 'din', 'Dinv13982' => 'din', 'Dinv17029' => 'din', 'Dinv18463' => 'din', 'Dinv33181' => 'din', 'Dinv35585' => 'din', 'Dinv37161' => 'din', 'Dinv42977' => 'din', 'Dinv43122' => 'din', 'Dinv44517' => 'din', 'Duzib093G0256' => 'dzi', 'Duzib106G1254' => 'dzi', 'Duzib128G1789' => 'dzi', 'Duzib133G0633' => 'dzi', 'Duzib138G0510' => 'dzi', 'Duzib150G1084' => 'dzi', 'Duzib168G0488' => 'dzi', 'Duzib168G1523' => 'dzi', 'Duzib170G0133' => 'dzi', 'ECA234G1433' => 'eca', 'ECA236G1432' => 'eca', 'ECA236G2256' => 'eca', 'ECA236G2365' => 'eca', 'ECA236G4830' => 'eca', 'ECA248G1505' => 'eca', 'EL10Ac3g06431' => 'bvu', 'EL10Ac5g12577' => 'bvu', 'EL10Ac6g13533' => 'bvu', 'EL10Ac7g16045' => 'bvu', 'Eucgr.A01281' => 'egr', 'Eucgr.B02326' => 'egr', 'Eucgr.H03532' => 'egr', 'Eucgr.K00553' => 'egr', 'Eucgr.K03116' => 'egr', 'FAN02G3963' => 'fan', 'FAN05G0438' => 'fan', 'FAN09G2434' => 'fan', 'FAN12G3984' => 'fan', 'FAN14G0798' => 'fan', 'FAN17G0652' => 'fan', 'FAN19G1988' => 'fan', 'FAN22G0632' => 'fan', 'FAN23G0387' => 'fan', 'FAN26G1323' => 'fan', 'FAN28G0666' => 'fan', 'FvH4_1g26080' => 'fve', 'FvH4_3g36780' => 'fve', 'FvH4_4g15270' => 'fve', 'FvH4_6g13490' => 'fve', 'Glyma.01G098700' => 'gma', 'Glyma.03G065900' => 'gma', 'Glyma.03G073754' => 'gma', 'Glyma.03G073758' => 'gma', 'Glyma.03G083200' => 'gma', 'Glyma.03G225500' => 'gma', 'Glyma.05G037766' => 'gma', 'Glyma.07G133500' => 'gma', 'Glyma.10G139400' => 'gma', 'Glyma.10G248900' => 'gma', 'Glyma.11G137800' => 'gma', 'Glyma.12G061300' => 'gma', 'Glyma.13G337900' => 'gma', 'Glyma.15G036600' => 'gma', 'Glyma.18G182800' => 'gma', 'Glyma.19G222500' => 'gma', 'Glyma.20G144800' => 'gma', 'Gohir.A01G222000' => 'ghi', 'Gohir.A03G044000' => 'ghi', 'Gohir.A03G044100' => 'ghi', 'Gohir.A04G083100' => 'ghi', 'Gohir.A07G127200' => 'ghi', 'Gohir.A07G132400' => 'ghi', 'Gohir.A08G000700' => 'ghi', 'Gohir.A11G327300' => 'ghi', 'Gohir.D01G211500' => 'ghi', 'Gohir.D03G123400' => 'ghi', 'Gohir.D03G123500' => 'ghi', 'Gohir.D04G121800' => 'ghi', 'Gohir.D07G131500' => 'ghi', 'Gohir.D07G136600' => 'ghi', 'Gohir.D08G011600' => 'ghi', 'Gohir.D11G346200' => 'ghi', 'Gorai.001G142800' => 'gra', 'Gorai.001G148700' => 'gra', 'Gorai.002G257300' => 'gra', 'Gorai.003G130000' => 'gra', 'Gorai.003G130100' => 'gra', 'Gorai.004G005300' => 'gra', 'Gorai.007G376500' => 'gra', 'Gorai.012G104700' => 'gra', 'GSVIVG01017946001' => 'vvi', 'GSVIVG01024928001' => 'vvi', 'GSVIVG01028227001' => 'vvi', 'GSVIVG01034151001' => 'vvi', 'HanXRQChr05g0135031' => 'han', 'HanXRQChr05g0135041' => 'han', 'HanXRQChr05g0140021' => 'han', 'HanXRQChr06g0178981' => 'han', 'HanXRQChr07g0188251' => 'han', 'HanXRQChr08g0235311' => 'han', 'HanXRQChr09g0271011' => 'han', 'HanXRQChr10g0293321' => 'han', 'HanXRQChr13g0388171' => 'han', 'Haze_00916' => 'cav', 'Haze_05063' => 'cav', 'Haze_20814' => 'cav', 'Haze_24128' => 'cav', 'Hma1.2p1_0745F.1_g212010' => 'hma', 'Hma1.2p1_0757F.1_g213260' => 'hma', 'Hma1.2p1_0936F.1_g238840' => 'hma', 'Hma1.2p1_1735F.1_g299890' => 'hma', 'Hma1.2p1_1861F.1_g305685' => 'hma', 'HPP92_003397' => 'vpl', 'HPP92_012597' => 'vpl', 'HPP92_015520' => 'vpl', 'HPP92_015539' => 'vpl', 'HPP92_020373' => 'vpl', 'Hund04938' => 'sun', 'Hund10677' => 'sun', 'Hund11033' => 'sun', 'Hund12155' => 'sun', 'Lalb_Chr01g0022551' => 'lal', 'Lalb_Chr03g0042341' => 'lal', 'Lalb_Chr07g0192931' => 'lal', 'Lalb_Chr12g0209551' => 'lal', 'Lalb_Chr19g0125251' => 'lal', 'Lalb_Chr19g0137891' => 'lal', 'Lalb_Chr21g0304641' => 'lal', 'Lalb_Chr21g0309881' => 'lal', 'Lj1A5T12' => 'lonja', 'Lj1C148G10' => 'lonja', 'Lj2A93T83' => 'lonja', 'Lj3A738G68' => 'lonja', 'Lj3C966T1' => 'lonja', 'Lj3g0018958' => 'lja', 'Lj3g0021831' => 'lja', 'Lj3g0025443' => 'lja', 'Lj4g0026809' => 'lja', 'Lj5g0012558' => 'lja', 'Lj5g0021586' => 'lja', 'Lsat_1_v5_gn_5_156840' => 'lsa', 'Lsat_1_v5_gn_8_73460' => 'lsa', 'Lsat_1_v5_gn_8_73481' => 'lsa', 'Lsat_1_v5_gn_9_31601' => 'lsa', 'Lsat_1_v5_gn_9_77320' => 'lsa', 'Manes.01G171300' => 'mes', 'Manes.01G171400' => 'mes', 'Manes.01G236100' => 'mes', 'Manes.02G130500' => 'mes', 'Manes.02G130600' => 'mes', 'Manes.03G180200' => 'mes', 'Manes.05G007000' => 'mes', 'Manes.08G084400' => 'mes', 'Manes.09G092600' => 'mes', 'Manes.15G027900' => 'mes', 'MBI04_g40948_MAGBIO' => 'mbi', 'MBI14_g12123_MAGBIO' => 'mbi', 'MBI18_g28915_MAGBIO' => 'mbi', 'MCO09G053' => 'mco', 'MCO11G782' => 'mco', 'MCO15G215' => 'mco', 'MD03G1088500' => 'mdo', 'MD03G1088600' => 'mdo', 'MD04G1130800' => 'mdo', 'MD09G1291700' => 'mdo', 'MD11G1097500' => 'mdo', 'MD11G1097600' => 'mdo', 'MD12G1143900' => 'mdo', 'MD13G1191400' => 'mdo', 'MD16G1191500' => 'mdo', 'Medtr1g085570' => 'mtr', 'Medtr1g104610' => 'mtr', 'Medtr2g097520' => 'mtr', 'Medtr4g021800' => 'mtr', 'Medtr4g021825' => 'mtr', 'Medtr4g064270' => 'mtr', 'Medtr4g064380' => 'mtr', 'Medtr7g062150' => 'mtr', 'MELO3C003138.2' => 'cme', 'MELO3C005187.2' => 'cme', 'MELO3C009252.2' => 'cme', 'MELO3C014481.2' => 'cme', 'MELO3C020616.2' => 'cme', 'MELO3C020617.2' => 'cme', 'MELO3C020618.2' => 'cme', 'Migut.G00328' => 'egut', 'Migut.J00320' => 'egut', 'Migut.L01000' => 'egut', 'Migut.L01953' => 'egut', 'MSTRG.10253' => 'ama', 'MSTRG.19077' => 'ama', 'MSTRG.26780' => 'ama', 'MSTRG.4023' => 'ama', 'MSTRG.5655' => 'ama', 'MSTRG.9992' => 'ama', 'Nitab4.5_0000043g0310' => 'nta', 'Nitab4.5_0000463g0080' => 'nta', 'Nitab4.5_0000705g0170' => 'nta', 'Nitab4.5_0001326g0060' => 'nta', 'Nitab4.5_0001628g0030' => 'nta', 'Nitab4.5_0002103g0110' => 'nta', 'Nitab4.5_0002946g0030' => 'nta', 'Nitab4.5_0004639g0030' => 'nta', 'Nn2g11149' => 'nnu', 'Nn2g13389' => 'nnu', 'Nn4g25326' => 'nnu', 'Nn4g26290' => 'nnu', 'Nn5g29865' => 'nnu', 'Oeu004163.1' => 'oeu', 'Oeu006901.1' => 'oeu', 'Oeu010096.1' => 'oeu', 'Oeu024340.1' => 'oeu', 'Oeu048369.1' => 'oeu', 'Os01g0973000' => 'osa', 'Os03g0273800' => 'osa', 'Os03g0701200' => 'osa', 'Os03g0834050' => 'osa', 'Os07g0634400' => 'osa', 'Peaxi162Scf00092g01414' => 'pax', 'Peaxi162Scf00165g00818' => 'pax', 'Peaxi162Scf00309g00516' => 'pax', 'Peaxi162Scf00774g00218' => 'pax', 'PGR004G1824' => 'pgr', 'PGR004G2606' => 'pgr', 'PGR031G2716' => 'pgr', 'PGR102G2460' => 'pgr', 'PGR142G2599' => 'pgr', 'PGSC0003DMG400000843' => 'stu', 'PGSC0003DMG400008829' => 'stu', 'PGSC0003DMG400030418' => 'stu', 'PGSC0003DMG400031834' => 'stu', 'PGSC0003DMG401028300' => 'stu', 'PGSC0003DMG402028300' => 'stu', 'Phvul.001G219300' => 'pvu', 'Phvul.007G056000' => 'pvu', 'Phvul.007G208000' => 'pvu', 'Phvul.008G119500' => 'pvu', 'Phvul.010G011200' => 'pvu', 'Phvul.010G014800' => 'pvu', 'Phvul.011G062900' => 'pvu', 'Phvul.L007043' => 'pvu', 'Potri.001G242300' => 'ptr', 'Potri.002G185300' => 'ptr', 'Potri.006G086900' => 'ptr', 'Potri.008G151700' => 'ptr', 'Potri.009G033500' => 'ptr', 'Potri.010G089300' => 'ptr', 'Potri.014G110800' => 'ptr', 'Pp3c27_8130' => 'ppa', 'Pp3c6_27410' => 'ppa', 'PRCOL_00001659' => 'pco', 'PRCOL_00001927' => 'pco', 'PRCOL_00003649' => 'pco', 'Prupe.1G011600' => 'ppe', 'Prupe.3G000800' => 'ppe', 'Prupe.3G001100' => 'ppe', 'Prupe.6G072700' => 'ppe', 'Prupe.6G072800' => 'ppe', 'Prupe.6G257300' => 'ppe', 'Prupe.8G033000' => 'ppe', 'Psat0s2633g0080' => 'psa', 'Psat0s3396g0080' => 'psa', 'Psat0s3396g0200' => 'psa', 'Psat3g139080' => 'psa', 'Psat5g285080' => 'psa', 'Psat6g157760' => 'psa', 'Psat6g208440' => 'psa', 'Psat7g215320' => 'psa', 'Psat7g215400' => 'psa', 'Psat7g235600' => 'psa', 'Psat7g235760' => 'psa', 'PSO063G4603' => 'pso', 'PSO210G0182' => 'pso', 'PSO210G0196' => 'pso', 'PSO339G0394' => 'pso', 'PSO339G4127' => 'pso', 'PSO513G0064' => 'pso', 'PSO761G0079' => 'pso', 'QL01p031003' => 'qlo', 'QL01p031078' => 'qlo', 'QL06p003004' => 'qlo', 'QL07p048731' => 'qlo', 'QL09p037427' => 'qlo', 'RcHm_v2.0_Chr3g0466361' => 'rch', 'RcHm_v2.0_Chr3g0485571' => 'rch', 'RcHm_v2.0_Chr4g0416551' => 'rch', 'RcHm_v2.0_Chr5g0065831' => 'rch', 'Rhsim01G0230500' => 'rsi', 'Rhsim05G0194000' => 'rsi', 'Rhsim08G0250400' => 'rsi', 'Sabra02G0131000' => 'sbr', 'Sabra06G0066300' => 'sbr', 'Sabra08G0115500' => 'sbr', 'Sabra09G0023900' => 'sbr', 'Sabra10G0054000' => 'sbr', 'Sabra14G0081500' => 'sbr', 'Sabra16G0147100' => 'sbr', 'SalBow2G2957' => 'sbo', 'SalBow4G3320' => 'sbo', 'SalBow8G1894' => 'sbo', 'Sc07g0007950' => 'sci', 'Sc12g0001360' => 'sci', 'Sc13g0004330' => 'sci', 'Sc20g0005010' => 'sci', 'Sed0000361' => 'sed', 'Sed0001706' => 'sed', 'Sed0002422' => 'sed', 'Sed0004029' => 'sed', 'Sed0004602' => 'sed', 'Sed0004943' => 'sed', 'Sed0008646' => 'sed', 'Sed0023313' => 'sed', 'Sed0024843' => 'sed', 'SEGI_00081' => 'sgi', 'SEGI_00947' => 'sgi', 'SEGI_04046' => 'sgi', 'SEGI_06880' => 'sgi', 'SEGI_09736' => 'sgi', 'SEGI_12741' => 'sgi', 'SEGI_14530' => 'sgi', 'SEGI_20705' => 'sgi', 'SEGI_26088' => 'sgi', 'SEGI_28323' => 'sgi', 'SEGI_33343' => 'sgi', 'SGA_v2.0_scaffold126G33775' => 'sas', 'SGA_v2.0_scaffold2G01337' => 'sas', 'SGA_v2.0_scaffold38G15006' => 'sas', 'SGA_v2.0_scaffold39G15264' => 'sas', 'SGA_v2.0_scaffold453G51880' => 'sas', 'SHI12696' => 'shi', 'SMO367G1096' => 'smo', 'Solyc01g068630.3' => 'sly', 'Solyc05g011880.3' => 'sly', 'Solyc06g076300.3' => 'sly', 'Solyc09g010940.4' => 'sly', 'Solyc09g075890.3' => 'sly', 'Sopen01g030560' => 'spe', 'Sopen05g006630' => 'spe', 'Sopen06g032720' => 'spe', 'Sopen09g005660' => 'spe', 'Sopen09g030690' => 'spe', 'Sp4g14540' => 'spa', 'Sp4g20030' => 'spa', 'Sp5g01320' => 'spa', 'Sp6g21170' => 'spa', 'Sp6g21180' => 'spa', 'Sp6g21190' => 'spa', 'Sp6g40220' => 'spa', 'TAR362G0122' => 'tar', 'TAR362G1338' => 'tar', 'TAR369G0590' => 'tar', 'TAR371G0824' => 'tar', 'TAR622G1429' => 'tar', 'TAR623G0734' => 'tar', 'TAR625G0441' => 'tar', 'TAR629G0976' => 'tar', 'TAR633G1195' => 'tar', 'TAR636G2660' => 'tar', 'THA.LOC104799440' => 'tha', 'THA.LOC104800966' => 'tha', 'THA.LOC104806559' => 'tha', 'THA.LOC104810765' => 'tha', 'THA.LOC104816266' => 'tha', 'THA.LOC104817419' => 'tha', 'THA.LOC104827021' => 'tha', 'Thecc.01G327400' => 'tca', 'Thecc.04G229200' => 'tca', 'Thecc.05G037400' => 'tca', 'Thecc.09G318600' => 'tca', 'Thecc.09G318700' => 'tca', 'Thhalv10006238m.g' => 'esa', 'Thhalv10014321m.g' => 'esa', 'Thhalv10014335m.g' => 'esa', 'Thhalv10015826m.g' => 'esa', 'Thhalv10017107m.g' => 'esa', 'Thhalv10017180m.g' => 'esa', 'Thhalv10029339m.g' => 'esa', 'TPR.G1699' => 'tpr', 'TPR.G23609' => 'tpr', 'TPR.G3081' => 'tpr', 'TPR.G40397' => 'tpr', 'TPR.G5522' => 'tpr', 'TPR.G5618' => 'tpr', 'TPR.G5626' => 'tpr', 'TWI09G1632' => 'twi', 'TWI23G1230' => 'twi', 'TWI53G1064' => 'twi', 'TWI59G0751' => 'twi', 'TWI74G0947' => 'twi', 'TWI77G0337' => 'twi', 'TWI79G1254' => 'twi', 'unitig_0.g2341' => 'ugi', 'unitig_26.g10006' => 'ugi', 'unitig_26.g10008' => 'ugi', 'unitig_26.g9192' => 'ugi', 'vmacro14547' => 'vma', 'vmacro15333' => 'vma', 'vmacro18743' => 'vma', 'vmacro20166' => 'vma', 'VMungo0331G0523' => 'vmu', 'VMungo0331G1202' => 'vmu', 'VMungo0720G1228' => 'vmu', 'VMungo0720G1514' => 'vmu', 'VMungo1080G0169' => 'vmu', 'VMungo1127G1475' => 'vmu', 'VMungo1383G1208' => 'vmu', 'VMungo1383G1698' => 'vmu', 'Zm00001eb012270' => 'zma', 'Zm00001eb054100' => 'zma', 'Zm00001eb063350' => 'zma', 'Zm00001eb328560' => 'zma', 'Zm00001eb342820' => 'zma', 'Zm00001eb362210' => 'zma', 'Zm00001eb397730' => 'zma', 'Zm00001eb399750' => 'zma' ), 'gf_id' => 'HOM05D000959', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000959' ), 'data_identifier' => 'HOM05D000959', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000959', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '622', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p07100' => 'bna', 'A03p11720' => 'bna', 'A05p08300' => 'bna', 'A05p13380' => 'bna', 'A09p54130' => 'bna', 'A10p16690' => 'bna', 'A10p16700' => 'bna', 'A10p33390' => 'bna', 'Aa31LG10G16020' => 'aar', 'Aa31LG1G11810' => 'aar', 'Aa31LG1G11830' => 'aar', 'Aa31LG1G22510' => 'aar', 'Aa31LG5G4890' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5793' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2310' => 'aag', 'Actinidia08499' => 'ach', 'Actinidia11262' => 'ach', 'Actinidia23926' => 'ach', 'Actinidia34420' => 'ach', 'Actinidia36970' => 'ach', 'Ah.02g111220' => 'amhyb', 'Ah.15g097750' => 'amhyb', 'AL4G27500' => 'aly', 'AL6G11470' => 'aly', 'AL8G35950' => 'aly', 'AL8G35960' => 'aly', 'AL8G35970' => 'aly', 'Aqoxy1G00912' => 'aox', 'Aqoxy2G02253' => 'aox', 'Aqoxy2G02411' => 'aox', 'Aqoxy5G00485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BZ66YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K8ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM4FUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6BF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HFV7XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25JBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0YNNV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MAKK6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P70IT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP2Z6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V61LZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YWP64R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3S9AI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7PGHH' => 'arhy', 'AT2G32150' => 'ath', 'AT3G62040' => 'ath', 'AT5G02230' => 'ath', 'AT5G59480' => 'ath', 'AT5G59490' => 'ath', 'ATR0332G060' => 'atr', 'ATR0559G190' => 'atr', 'ATR0693G294' => 'atr', 'Atru.chr3.3975' => 'acertr', 'Atru.chr3.3976' => 'acertr', 'Atru.chr3.3977' => 'acertr', 'Atru.chr4.2498' => 'acertr', 'Atru.chr5.838' => 'acertr', 'Atru.chr8.1990' => 'acertr', 'Atru.chr8.1991' => 'acertr', 'Atru.chr8.1992' => 'acertr', 'AUR62001759' => 'cqu', 'AUR62009545' => 'cqu', 'AUR62010474' => 'cqu', 'AUR62025820' => 'cqu', 'AUR62030422' => 'cqu', 'AUR62033605' => 'cqu', 'AUR62038615' => 'cqu', 'AUR62041347' => 'cqu', 'BcaB01g04574' => 'bca', 'BcaB02g09263' => 'bca', 'BcaB02g10453' => 'bca', 'BcaB05g22513' => 'bca', 'BcaB08g36253' => 'bca', 'BcaB08g36254' => 'bca', 'BcaC01g06519' => 'bca', 'BcaC02g11889' => 'bca', 'BcaC03g14010' => 'bca', 'BcaC03g18439' => 'bca', 'BcaC04g19765' => 'bca', 'BcaC09g48432' => 'bca', 'BcaNung07302' => 'bca', 'BolC2t06040H' => 'bol', 'BolC2t07346H' => 'bol', 'BolC3t13817H' => 'bol', 'BolC4t22625H' => 'bol', 'BolC4t23297H' => 'bol', 'BolC8t51278H' => 'bol', 'BolC9t58050H' => 'bol', 'BolC9t58051H' => 'bol', 'BolC9t60163H' => 'bol', 'BraA02t04712Z' => 'bra', 'BraA02t05791Z' => 'bra', 'BraA03t10483Z' => 'bra', 'BraA05t19795Z' => 'bra', 'BraA05t20276Z' => 'bra', 'BraA09t40827Z' => 'bra', 'BraA10t43750Z' => 'bra', 'BraA10t43751Z' => 'bra', 'BraA10t45370Z' => 'bra', 'C02p00400' => 'bna', 'C02p12460' => 'bna', 'C03p13680' => 'bna', 'C04p10270' => 'bna', 'C04p17500' => 'bna', 'C08p37010' => 'bna', 'C09p51880' => 'bna', 'C09p51890' => 'bna', 'C09p74300' => 'bna', 'CAN.G179.26' => 'can', 'CAN.G3384.1' => 'can', 'CAN.G394.68' => 'can', 'CAN.G907.13' => 'can', 'CANSAT11G0012' => 'cansat', 'CANSAT25G1586' => 'cansat', 'CANSAT35G0735' => 'cansat', 'CANSAT54G0556' => 'cansat', 'CANSAT64G0356' => 'cansat', 'CANSAT78G2042' => 'cansat', 'CARHR125920' => 'chi', 'CARHR131910' => 'chi', 'CARHR172390' => 'chi', 'CARHR211140' => 'chi', 'CARHR285850' => 'chi', 'CARHR285860' => 'chi', 'Carub.0004s1347' => 'cru', 'Carub.0004s1960' => 'cru', 'Carub.0005s2880' => 'cru', 'Carub.0006s0107' => 'cru', 'Carub.0008s2015' => 'cru', 'Carub.0008s2016' => 'cru', 'Carub.0008s2017' => 'cru', 'Ca_01315_v3' => 'car', 'Ca_05063_v3' => 'car', 'Ca_10231_v3' => 'car', 'Ca_10913_v3' => 'car', 'Ca_19156_v3' => 'car', 'Ca_23644_v3' => 'car', 'Ca_26735_v3' => 'car', 'Cc01_g13130' => 'ccan', 'Cc02_g21690' => 'ccan', 'Cc03_g03600' => 'ccan', 'Cc06_g02510' => 'ccan', 'CDE02G1265' => 'cde', 'CDE05G0415' => 'cde', 'CDE08G1082' => 'cde', 'Cfa005780' => 'cfa', 'Cfa011522' => 'cfa', 'Cfa011523' => 'cfa', 'Cfa015627' => 'cfa', 'Cfa017359' => 'cfa', 'Ciclev10005687m.g' => 'ccl', 'Ciclev10012173m.g' => 'ccl', 'Ciclev10021621m.g' => 'ccl', 'Ciclev10028968m.g' => 'ccl', 'Ciclev10029907m.g' => 'ccl', 'CiPaw.01G164800' => 'cil', 'CiPaw.07G083700' => 'cil', 'CiPaw.07G127000' => 'cil', 'CiPaw.07G136900' => 'cil', 'CiPaw.08G081700' => 'cil', 'CiPaw.09G194600' => 'cil', 'CiPaw.10G146500' => 'cil', 'CiPaw.13G091500' => 'cil', 'CiPaw.13G091600' => 'cil', 'ClCG00G003390' => 'cla', 'ClCG01G007220' => 'cla', 'ClCG03G001370' => 'cla', 'ClCG04G008100' => 'cla', 'ClCG06G006110' => 'cla', 'ClCG06G006130' => 'cla', 'ClCG10G021210' => 'cla', 'COL.COLO4_07648' => 'col', 'COL.COLO4_07650' => 'col', 'COL.COLO4_07651' => 'col', 'COL.COLO4_14780' => 'col', 'COL.COLO4_18546' => 'col', 'COL.COLO4_18547' => 'col', 'COL.COLO4_23103' => 'col', 'COL.COLO4_30419' => 'col', 'COL.COLO4_34232' => 'col', 'Cpa.g.sc169.20' => 'cpa', 'Cpa.g.sc57.45' => 'cpa', 'Cpa.g.sc58.124' => 'cpa', 'Cpa.g.sc58.125' => 'cpa', 'Cpa.g.sc81.118' => 'cpa', 'Cpa.g.sc81.119' => 'cpa', 'Cre12.g524700' => 'cre', 'CsaV3_1G034430' => 'csa', 'CsaV3_1G034440' => 'csa', 'CsaV3_1G034450' => 'csa', 'CsaV3_3G034830' => 'csa', 'CsaV3_4G025090' => 'csa', 'CsaV3_5G018660' => 'csa', 'CsaV3_6G038160' => 'csa', 'CSS0003447' => 'camsi', 'CSS0017840' => 'camsi', 'CSS0019260' => 'camsi', 'CSS0040375' => 'camsi', 'CSS0042533' => 'camsi', 'DCAR_005960' => 'dca', 'DCAR_012104' => 'dca', 'DCAR_012105' => 'dca', 'DCAR_012293' => 'dca', 'DCAR_015632' => 'dca', 'DCAR_024602' => 'dca', 'DCAR_028752' => 'dca', 'Dinv06261' => 'din', 'Dinv13982' => 'din', 'Dinv17029' => 'din', 'Dinv18463' => 'din', 'Dinv33181' => 'din', 'Dinv35585' => 'din', 'Dinv37161' => 'din', 'Dinv42977' => 'din', 'Dinv43122' => 'din', 'Dinv44517' => 'din', 'Duzib093G0256' => 'dzi', 'Duzib106G1254' => 'dzi', 'Duzib128G1789' => 'dzi', 'Duzib133G0633' => 'dzi', 'Duzib138G0510' => 'dzi', 'Duzib150G1084' => 'dzi', 'Duzib168G0488' => 'dzi', 'Duzib168G1523' => 'dzi', 'Duzib170G0133' => 'dzi', 'ECA234G1433' => 'eca', 'ECA236G1432' => 'eca', 'ECA236G2256' => 'eca', 'ECA236G2365' => 'eca', 'ECA236G4830' => 'eca', 'ECA248G1505' => 'eca', 'EL10Ac3g06431' => 'bvu', 'EL10Ac5g12577' => 'bvu', 'EL10Ac6g13533' => 'bvu', 'EL10Ac7g16045' => 'bvu', 'Eucgr.A01281' => 'egr', 'Eucgr.B02326' => 'egr', 'Eucgr.H03532' => 'egr', 'Eucgr.K00553' => 'egr', 'Eucgr.K03116' => 'egr', 'FAN02G3963' => 'fan', 'FAN05G0438' => 'fan', 'FAN09G2434' => 'fan', 'FAN12G3984' => 'fan', 'FAN14G0798' => 'fan', 'FAN17G0652' => 'fan', 'FAN19G1988' => 'fan', 'FAN22G0632' => 'fan', 'FAN23G0387' => 'fan', 'FAN26G1323' => 'fan', 'FAN28G0666' => 'fan', 'FvH4_1g26080' => 'fve', 'FvH4_3g36780' => 'fve', 'FvH4_4g15270' => 'fve', 'FvH4_6g13490' => 'fve', 'Glyma.01G098700' => 'gma', 'Glyma.03G065900' => 'gma', 'Glyma.03G073754' => 'gma', 'Glyma.03G073758' => 'gma', 'Glyma.03G083200' => 'gma', 'Glyma.03G225500' => 'gma', 'Glyma.05G037766' => 'gma', 'Glyma.07G133500' => 'gma', 'Glyma.10G139400' => 'gma', 'Glyma.10G248900' => 'gma', 'Glyma.11G137800' => 'gma', 'Glyma.12G061300' => 'gma', 'Glyma.13G337900' => 'gma', 'Glyma.15G036600' => 'gma', 'Glyma.18G182800' => 'gma', 'Glyma.19G222500' => 'gma', 'Glyma.20G144800' => 'gma', 'Gohir.A01G222000' => 'ghi', 'Gohir.A03G044000' => 'ghi', 'Gohir.A03G044100' => 'ghi', 'Gohir.A04G083100' => 'ghi', 'Gohir.A07G127200' => 'ghi', 'Gohir.A07G132400' => 'ghi', 'Gohir.A08G000700' => 'ghi', 'Gohir.A11G327300' => 'ghi', 'Gohir.D01G211500' => 'ghi', 'Gohir.D03G123400' => 'ghi', 'Gohir.D03G123500' => 'ghi', 'Gohir.D04G121800' => 'ghi', 'Gohir.D07G131500' => 'ghi', 'Gohir.D07G136600' => 'ghi', 'Gohir.D08G011600' => 'ghi', 'Gohir.D11G346200' => 'ghi', 'Gorai.001G142800' => 'gra', 'Gorai.001G148700' => 'gra', 'Gorai.002G257300' => 'gra', 'Gorai.003G130000' => 'gra', 'Gorai.003G130100' => 'gra', 'Gorai.004G005300' => 'gra', 'Gorai.007G376500' => 'gra', 'Gorai.012G104700' => 'gra', 'GSVIVG01017946001' => 'vvi', 'GSVIVG01024928001' => 'vvi', 'GSVIVG01028227001' => 'vvi', 'GSVIVG01034151001' => 'vvi', 'HanXRQChr05g0135031' => 'han', 'HanXRQChr05g0135041' => 'han', 'HanXRQChr05g0140021' => 'han', 'HanXRQChr06g0178981' => 'han', 'HanXRQChr07g0188251' => 'han', 'HanXRQChr08g0235311' => 'han', 'HanXRQChr09g0271011' => 'han', 'HanXRQChr10g0293321' => 'han', 'HanXRQChr13g0388171' => 'han', 'Haze_00916' => 'cav', 'Haze_05063' => 'cav', 'Haze_20814' => 'cav', 'Haze_24128' => 'cav', 'Hma1.2p1_0745F.1_g212010' => 'hma', 'Hma1.2p1_0757F.1_g213260' => 'hma', 'Hma1.2p1_0936F.1_g238840' => 'hma', 'Hma1.2p1_1735F.1_g299890' => 'hma', 'Hma1.2p1_1861F.1_g305685' => 'hma', 'HPP92_003397' => 'vpl', 'HPP92_012597' => 'vpl', 'HPP92_015520' => 'vpl', 'HPP92_015539' => 'vpl', 'HPP92_020373' => 'vpl', 'Hund04938' => 'sun', 'Hund10677' => 'sun', 'Hund11033' => 'sun', 'Hund12155' => 'sun', 'Lalb_Chr01g0022551' => 'lal', 'Lalb_Chr03g0042341' => 'lal', 'Lalb_Chr07g0192931' => 'lal', 'Lalb_Chr12g0209551' => 'lal', 'Lalb_Chr19g0125251' => 'lal', 'Lalb_Chr19g0137891' => 'lal', 'Lalb_Chr21g0304641' => 'lal', 'Lalb_Chr21g0309881' => 'lal', 'Lj1A5T12' => 'lonja', 'Lj1C148G10' => 'lonja', 'Lj2A93T83' => 'lonja', 'Lj3A738G68' => 'lonja', 'Lj3C966T1' => 'lonja', 'Lj3g0018958' => 'lja', 'Lj3g0021831' => 'lja', 'Lj3g0025443' => 'lja', 'Lj4g0026809' => 'lja', 'Lj5g0012558' => 'lja', 'Lj5g0021586' => 'lja', 'Lsat_1_v5_gn_5_156840' => 'lsa', 'Lsat_1_v5_gn_8_73460' => 'lsa', 'Lsat_1_v5_gn_8_73481' => 'lsa', 'Lsat_1_v5_gn_9_31601' => 'lsa', 'Lsat_1_v5_gn_9_77320' => 'lsa', 'Manes.01G171300' => 'mes', 'Manes.01G171400' => 'mes', 'Manes.01G236100' => 'mes', 'Manes.02G130500' => 'mes', 'Manes.02G130600' => 'mes', 'Manes.03G180200' => 'mes', 'Manes.05G007000' => 'mes', 'Manes.08G084400' => 'mes', 'Manes.09G092600' => 'mes', 'Manes.15G027900' => 'mes', 'MBI04_g40948_MAGBIO' => 'mbi', 'MBI14_g12123_MAGBIO' => 'mbi', 'MBI18_g28915_MAGBIO' => 'mbi', 'MCO09G053' => 'mco', 'MCO11G782' => 'mco', 'MCO15G215' => 'mco', 'MD03G1088500' => 'mdo', 'MD03G1088600' => 'mdo', 'MD04G1130800' => 'mdo', 'MD09G1291700' => 'mdo', 'MD11G1097500' => 'mdo', 'MD11G1097600' => 'mdo', 'MD12G1143900' => 'mdo', 'MD13G1191400' => 'mdo', 'MD16G1191500' => 'mdo', 'Medtr1g085570' => 'mtr', 'Medtr1g104610' => 'mtr', 'Medtr2g097520' => 'mtr', 'Medtr4g021800' => 'mtr', 'Medtr4g021825' => 'mtr', 'Medtr4g064270' => 'mtr', 'Medtr4g064380' => 'mtr', 'Medtr7g062150' => 'mtr', 'MELO3C003138.2' => 'cme', 'MELO3C005187.2' => 'cme', 'MELO3C009252.2' => 'cme', 'MELO3C014481.2' => 'cme', 'MELO3C020616.2' => 'cme', 'MELO3C020617.2' => 'cme', 'MELO3C020618.2' => 'cme', 'Migut.G00328' => 'egut', 'Migut.J00320' => 'egut', 'Migut.L01000' => 'egut', 'Migut.L01953' => 'egut', 'MSTRG.10253' => 'ama', 'MSTRG.19077' => 'ama', 'MSTRG.26780' => 'ama', 'MSTRG.4023' => 'ama', 'MSTRG.5655' => 'ama', 'MSTRG.9992' => 'ama', 'Nitab4.5_0000043g0310' => 'nta', 'Nitab4.5_0000463g0080' => 'nta', 'Nitab4.5_0000705g0170' => 'nta', 'Nitab4.5_0001326g0060' => 'nta', 'Nitab4.5_0001628g0030' => 'nta', 'Nitab4.5_0002103g0110' => 'nta', 'Nitab4.5_0002946g0030' => 'nta', 'Nitab4.5_0004639g0030' => 'nta', 'Nn2g11149' => 'nnu', 'Nn2g13389' => 'nnu', 'Nn4g25326' => 'nnu', 'Nn4g26290' => 'nnu', 'Nn5g29865' => 'nnu', 'Oeu004163.1' => 'oeu', 'Oeu006901.1' => 'oeu', 'Oeu010096.1' => 'oeu', 'Oeu024340.1' => 'oeu', 'Oeu048369.1' => 'oeu', 'Os01g0973000' => 'osa', 'Os03g0273800' => 'osa', 'Os03g0701200' => 'osa', 'Os03g0834050' => 'osa', 'Os07g0634400' => 'osa', 'Peaxi162Scf00092g01414' => 'pax', 'Peaxi162Scf00165g00818' => 'pax', 'Peaxi162Scf00309g00516' => 'pax', 'Peaxi162Scf00774g00218' => 'pax', 'PGR004G1824' => 'pgr', 'PGR004G2606' => 'pgr', 'PGR031G2716' => 'pgr', 'PGR102G2460' => 'pgr', 'PGR142G2599' => 'pgr', 'PGSC0003DMG400000843' => 'stu', 'PGSC0003DMG400008829' => 'stu', 'PGSC0003DMG400030418' => 'stu', 'PGSC0003DMG400031834' => 'stu', 'PGSC0003DMG401028300' => 'stu', 'PGSC0003DMG402028300' => 'stu', 'Phvul.001G219300' => 'pvu', 'Phvul.007G056000' => 'pvu', 'Phvul.007G208000' => 'pvu', 'Phvul.008G119500' => 'pvu', 'Phvul.010G011200' => 'pvu', 'Phvul.010G014800' => 'pvu', 'Phvul.011G062900' => 'pvu', 'Phvul.L007043' => 'pvu', 'Potri.001G242300' => 'ptr', 'Potri.002G185300' => 'ptr', 'Potri.006G086900' => 'ptr', 'Potri.008G151700' => 'ptr', 'Potri.009G033500' => 'ptr', 'Potri.010G089300' => 'ptr', 'Potri.014G110800' => 'ptr', 'Pp3c27_8130' => 'ppa', 'Pp3c6_27410' => 'ppa', 'PRCOL_00001659' => 'pco', 'PRCOL_00001927' => 'pco', 'PRCOL_00003649' => 'pco', 'Prupe.1G011600' => 'ppe', 'Prupe.3G000800' => 'ppe', 'Prupe.3G001100' => 'ppe', 'Prupe.6G072700' => 'ppe', 'Prupe.6G072800' => 'ppe', 'Prupe.6G257300' => 'ppe', 'Prupe.8G033000' => 'ppe', 'Psat0s2633g0080' => 'psa', 'Psat0s3396g0080' => 'psa', 'Psat0s3396g0200' => 'psa', 'Psat3g139080' => 'psa', 'Psat5g285080' => 'psa', 'Psat6g157760' => 'psa', 'Psat6g208440' => 'psa', 'Psat7g215320' => 'psa', 'Psat7g215400' => 'psa', 'Psat7g235600' => 'psa', 'Psat7g235760' => 'psa', 'PSO063G4603' => 'pso', 'PSO210G0182' => 'pso', 'PSO210G0196' => 'pso', 'PSO339G0394' => 'pso', 'PSO339G4127' => 'pso', 'PSO513G0064' => 'pso', 'PSO761G0079' => 'pso', 'QL01p031003' => 'qlo', 'QL01p031078' => 'qlo', 'QL06p003004' => 'qlo', 'QL07p048731' => 'qlo', 'QL09p037427' => 'qlo', 'RcHm_v2.0_Chr3g0466361' => 'rch', 'RcHm_v2.0_Chr3g0485571' => 'rch', 'RcHm_v2.0_Chr4g0416551' => 'rch', 'RcHm_v2.0_Chr5g0065831' => 'rch', 'Rhsim01G0230500' => 'rsi', 'Rhsim05G0194000' => 'rsi', 'Rhsim08G0250400' => 'rsi', 'Sabra02G0131000' => 'sbr', 'Sabra06G0066300' => 'sbr', 'Sabra08G0115500' => 'sbr', 'Sabra09G0023900' => 'sbr', 'Sabra10G0054000' => 'sbr', 'Sabra14G0081500' => 'sbr', 'Sabra16G0147100' => 'sbr', 'SalBow2G2957' => 'sbo', 'SalBow4G3320' => 'sbo', 'SalBow8G1894' => 'sbo', 'Sc07g0007950' => 'sci', 'Sc12g0001360' => 'sci', 'Sc13g0004330' => 'sci', 'Sc20g0005010' => 'sci', 'Sed0000361' => 'sed', 'Sed0001706' => 'sed', 'Sed0002422' => 'sed', 'Sed0004029' => 'sed', 'Sed0004602' => 'sed', 'Sed0004943' => 'sed', 'Sed0008646' => 'sed', 'Sed0023313' => 'sed', 'Sed0024843' => 'sed', 'SEGI_00081' => 'sgi', 'SEGI_00947' => 'sgi', 'SEGI_04046' => 'sgi', 'SEGI_06880' => 'sgi', 'SEGI_09736' => 'sgi', 'SEGI_12741' => 'sgi', 'SEGI_14530' => 'sgi', 'SEGI_20705' => 'sgi', 'SEGI_26088' => 'sgi', 'SEGI_28323' => 'sgi', 'SEGI_33343' => 'sgi', 'SGA_v2.0_scaffold126G33775' => 'sas', 'SGA_v2.0_scaffold2G01337' => 'sas', 'SGA_v2.0_scaffold38G15006' => 'sas', 'SGA_v2.0_scaffold39G15264' => 'sas', 'SGA_v2.0_scaffold453G51880' => 'sas', 'SHI12696' => 'shi', 'SMO367G1096' => 'smo', 'Solyc01g068630.3' => 'sly', 'Solyc05g011880.3' => 'sly', 'Solyc06g076300.3' => 'sly', 'Solyc09g010940.4' => 'sly', 'Solyc09g075890.3' => 'sly', 'Sopen01g030560' => 'spe', 'Sopen05g006630' => 'spe', 'Sopen06g032720' => 'spe', 'Sopen09g005660' => 'spe', 'Sopen09g030690' => 'spe', 'Sp4g14540' => 'spa', 'Sp4g20030' => 'spa', 'Sp5g01320' => 'spa', 'Sp6g21170' => 'spa', 'Sp6g21180' => 'spa', 'Sp6g21190' => 'spa', 'Sp6g40220' => 'spa', 'TAR362G0122' => 'tar', 'TAR362G1338' => 'tar', 'TAR369G0590' => 'tar', 'TAR371G0824' => 'tar', 'TAR622G1429' => 'tar', 'TAR623G0734' => 'tar', 'TAR625G0441' => 'tar', 'TAR629G0976' => 'tar', 'TAR633G1195' => 'tar', 'TAR636G2660' => 'tar', 'THA.LOC104799440' => 'tha', 'THA.LOC104800966' => 'tha', 'THA.LOC104806559' => 'tha', 'THA.LOC104810765' => 'tha', 'THA.LOC104816266' => 'tha', 'THA.LOC104817419' => 'tha', 'THA.LOC104827021' => 'tha', 'Thecc.01G327400' => 'tca', 'Thecc.04G229200' => 'tca', 'Thecc.05G037400' => 'tca', 'Thecc.09G318600' => 'tca', 'Thecc.09G318700' => 'tca', 'Thhalv10006238m.g' => 'esa', 'Thhalv10014321m.g' => 'esa', 'Thhalv10014335m.g' => 'esa', 'Thhalv10015826m.g' => 'esa', 'Thhalv10017107m.g' => 'esa', 'Thhalv10017180m.g' => 'esa', 'Thhalv10029339m.g' => 'esa', 'TPR.G1699' => 'tpr', 'TPR.G23609' => 'tpr', 'TPR.G3081' => 'tpr', 'TPR.G40397' => 'tpr', 'TPR.G5522' => 'tpr', 'TPR.G5618' => 'tpr', 'TPR.G5626' => 'tpr', 'TWI09G1632' => 'twi', 'TWI23G1230' => 'twi', 'TWI53G1064' => 'twi', 'TWI59G0751' => 'twi', 'TWI74G0947' => 'twi', 'TWI77G0337' => 'twi', 'TWI79G1254' => 'twi', 'unitig_0.g2341' => 'ugi', 'unitig_26.g10006' => 'ugi', 'unitig_26.g10008' => 'ugi', 'unitig_26.g9192' => 'ugi', 'vmacro14547' => 'vma', 'vmacro15333' => 'vma', 'vmacro18743' => 'vma', 'vmacro20166' => 'vma', 'VMungo0331G0523' => 'vmu', 'VMungo0331G1202' => 'vmu', 'VMungo0720G1228' => 'vmu', 'VMungo0720G1514' => 'vmu', 'VMungo1080G0169' => 'vmu', 'VMungo1127G1475' => 'vmu', 'VMungo1383G1208' => 'vmu', 'VMungo1383G1698' => 'vmu', 'Zm00001eb012270' => 'zma', 'Zm00001eb054100' => 'zma', 'Zm00001eb063350' => 'zma', 'Zm00001eb328560' => 'zma', 'Zm00001eb342820' => 'zma', 'Zm00001eb362210' => 'zma', 'Zm00001eb397730' => 'zma', 'Zm00001eb399750' => 'zma' ) $gf_id = 'HOM05D000959' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000959' ) $data_identifier = 'HOM05D000959' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 5, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 5, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 10, 'mbi' => (int) 3, 'mco' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 2, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 3, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 11, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399750' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000959', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '622', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p07100' => 'bna', 'A03p11720' => 'bna', 'A05p08300' => 'bna', 'A05p13380' => 'bna', 'A09p54130' => 'bna', 'A10p16690' => 'bna', 'A10p16700' => 'bna', 'A10p33390' => 'bna', 'Aa31LG10G16020' => 'aar', 'Aa31LG1G11810' => 'aar', 'Aa31LG1G11830' => 'aar', 'Aa31LG1G22510' => 'aar', 'Aa31LG5G4890' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5793' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2310' => 'aag', 'Actinidia08499' => 'ach', 'Actinidia11262' => 'ach', 'Actinidia23926' => 'ach', 'Actinidia34420' => 'ach', 'Actinidia36970' => 'ach', 'Ah.02g111220' => 'amhyb', 'Ah.15g097750' => 'amhyb', 'AL4G27500' => 'aly', 'AL6G11470' => 'aly', 'AL8G35950' => 'aly', 'AL8G35960' => 'aly', 'AL8G35970' => 'aly', 'Aqoxy1G00912' => 'aox', 'Aqoxy2G02253' => 'aox', 'Aqoxy2G02411' => 'aox', 'Aqoxy5G00485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BZ66YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K8ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM4FUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6BF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HFV7XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25JBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0YNNV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MAKK6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P70IT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP2Z6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V61LZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YWP64R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3S9AI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7PGHH' => 'arhy', 'AT2G32150' => 'ath', 'AT3G62040' => 'ath', 'AT5G02230' => 'ath', 'AT5G59480' => 'ath', 'AT5G59490' => 'ath', 'ATR0332G060' => 'atr', 'ATR0559G190' => 'atr', 'ATR0693G294' => 'atr', 'Atru.chr3.3975' => 'acertr', 'Atru.chr3.3976' => 'acertr', 'Atru.chr3.3977' => 'acertr', 'Atru.chr4.2498' => 'acertr', 'Atru.chr5.838' => 'acertr', 'Atru.chr8.1990' => 'acertr', 'Atru.chr8.1991' => 'acertr', 'Atru.chr8.1992' => 'acertr', 'AUR62001759' => 'cqu', 'AUR62009545' => 'cqu', 'AUR62010474' => 'cqu', 'AUR62025820' => 'cqu', 'AUR62030422' => 'cqu', 'AUR62033605' => 'cqu', 'AUR62038615' => 'cqu', 'AUR62041347' => 'cqu', 'BcaB01g04574' => 'bca', 'BcaB02g09263' => 'bca', 'BcaB02g10453' => 'bca', 'BcaB05g22513' => 'bca', 'BcaB08g36253' => 'bca', 'BcaB08g36254' => 'bca', 'BcaC01g06519' => 'bca', 'BcaC02g11889' => 'bca', 'BcaC03g14010' => 'bca', 'BcaC03g18439' => 'bca', 'BcaC04g19765' => 'bca', 'BcaC09g48432' => 'bca', 'BcaNung07302' => 'bca', 'BolC2t06040H' => 'bol', 'BolC2t07346H' => 'bol', 'BolC3t13817H' => 'bol', 'BolC4t22625H' => 'bol', 'BolC4t23297H' => 'bol', 'BolC8t51278H' => 'bol', 'BolC9t58050H' => 'bol', 'BolC9t58051H' => 'bol', 'BolC9t60163H' => 'bol', 'BraA02t04712Z' => 'bra', 'BraA02t05791Z' => 'bra', 'BraA03t10483Z' => 'bra', 'BraA05t19795Z' => 'bra', 'BraA05t20276Z' => 'bra', 'BraA09t40827Z' => 'bra', 'BraA10t43750Z' => 'bra', 'BraA10t43751Z' => 'bra', 'BraA10t45370Z' => 'bra', 'C02p00400' => 'bna', 'C02p12460' => 'bna', 'C03p13680' => 'bna', 'C04p10270' => 'bna', 'C04p17500' => 'bna', 'C08p37010' => 'bna', 'C09p51880' => 'bna', 'C09p51890' => 'bna', 'C09p74300' => 'bna', 'CAN.G179.26' => 'can', 'CAN.G3384.1' => 'can', 'CAN.G394.68' => 'can', 'CAN.G907.13' => 'can', 'CANSAT11G0012' => 'cansat', 'CANSAT25G1586' => 'cansat', 'CANSAT35G0735' => 'cansat', 'CANSAT54G0556' => 'cansat', 'CANSAT64G0356' => 'cansat', 'CANSAT78G2042' => 'cansat', 'CARHR125920' => 'chi', 'CARHR131910' => 'chi', 'CARHR172390' => 'chi', 'CARHR211140' => 'chi', 'CARHR285850' => 'chi', 'CARHR285860' => 'chi', 'Carub.0004s1347' => 'cru', 'Carub.0004s1960' => 'cru', 'Carub.0005s2880' => 'cru', 'Carub.0006s0107' => 'cru', 'Carub.0008s2015' => 'cru', 'Carub.0008s2016' => 'cru', 'Carub.0008s2017' => 'cru', 'Ca_01315_v3' => 'car', 'Ca_05063_v3' => 'car', 'Ca_10231_v3' => 'car', 'Ca_10913_v3' => 'car', 'Ca_19156_v3' => 'car', 'Ca_23644_v3' => 'car', 'Ca_26735_v3' => 'car', 'Cc01_g13130' => 'ccan', 'Cc02_g21690' => 'ccan', 'Cc03_g03600' => 'ccan', 'Cc06_g02510' => 'ccan', 'CDE02G1265' => 'cde', 'CDE05G0415' => 'cde', 'CDE08G1082' => 'cde', 'Cfa005780' => 'cfa', 'Cfa011522' => 'cfa', 'Cfa011523' => 'cfa', 'Cfa015627' => 'cfa', 'Cfa017359' => 'cfa', 'Ciclev10005687m.g' => 'ccl', 'Ciclev10012173m.g' => 'ccl', 'Ciclev10021621m.g' => 'ccl', 'Ciclev10028968m.g' => 'ccl', 'Ciclev10029907m.g' => 'ccl', 'CiPaw.01G164800' => 'cil', 'CiPaw.07G083700' => 'cil', 'CiPaw.07G127000' => 'cil', 'CiPaw.07G136900' => 'cil', 'CiPaw.08G081700' => 'cil', 'CiPaw.09G194600' => 'cil', 'CiPaw.10G146500' => 'cil', 'CiPaw.13G091500' => 'cil', 'CiPaw.13G091600' => 'cil', 'ClCG00G003390' => 'cla', 'ClCG01G007220' => 'cla', 'ClCG03G001370' => 'cla', 'ClCG04G008100' => 'cla', 'ClCG06G006110' => 'cla', 'ClCG06G006130' => 'cla', 'ClCG10G021210' => 'cla', 'COL.COLO4_07648' => 'col', 'COL.COLO4_07650' => 'col', 'COL.COLO4_07651' => 'col', 'COL.COLO4_14780' => 'col', 'COL.COLO4_18546' => 'col', 'COL.COLO4_18547' => 'col', 'COL.COLO4_23103' => 'col', 'COL.COLO4_30419' => 'col', 'COL.COLO4_34232' => 'col', 'Cpa.g.sc169.20' => 'cpa', 'Cpa.g.sc57.45' => 'cpa', 'Cpa.g.sc58.124' => 'cpa', 'Cpa.g.sc58.125' => 'cpa', 'Cpa.g.sc81.118' => 'cpa', 'Cpa.g.sc81.119' => 'cpa', 'Cre12.g524700' => 'cre', 'CsaV3_1G034430' => 'csa', 'CsaV3_1G034440' => 'csa', 'CsaV3_1G034450' => 'csa', 'CsaV3_3G034830' => 'csa', 'CsaV3_4G025090' => 'csa', 'CsaV3_5G018660' => 'csa', 'CsaV3_6G038160' => 'csa', 'CSS0003447' => 'camsi', 'CSS0017840' => 'camsi', 'CSS0019260' => 'camsi', 'CSS0040375' => 'camsi', 'CSS0042533' => 'camsi', 'DCAR_005960' => 'dca', 'DCAR_012104' => 'dca', 'DCAR_012105' => 'dca', 'DCAR_012293' => 'dca', 'DCAR_015632' => 'dca', 'DCAR_024602' => 'dca', 'DCAR_028752' => 'dca', 'Dinv06261' => 'din', 'Dinv13982' => 'din', 'Dinv17029' => 'din', 'Dinv18463' => 'din', 'Dinv33181' => 'din', 'Dinv35585' => 'din', 'Dinv37161' => 'din', 'Dinv42977' => 'din', 'Dinv43122' => 'din', 'Dinv44517' => 'din', 'Duzib093G0256' => 'dzi', 'Duzib106G1254' => 'dzi', 'Duzib128G1789' => 'dzi', 'Duzib133G0633' => 'dzi', 'Duzib138G0510' => 'dzi', 'Duzib150G1084' => 'dzi', 'Duzib168G0488' => 'dzi', 'Duzib168G1523' => 'dzi', 'Duzib170G0133' => 'dzi', 'ECA234G1433' => 'eca', 'ECA236G1432' => 'eca', 'ECA236G2256' => 'eca', 'ECA236G2365' => 'eca', 'ECA236G4830' => 'eca', 'ECA248G1505' => 'eca', 'EL10Ac3g06431' => 'bvu', 'EL10Ac5g12577' => 'bvu', 'EL10Ac6g13533' => 'bvu', 'EL10Ac7g16045' => 'bvu', 'Eucgr.A01281' => 'egr', 'Eucgr.B02326' => 'egr', 'Eucgr.H03532' => 'egr', 'Eucgr.K00553' => 'egr', 'Eucgr.K03116' => 'egr', 'FAN02G3963' => 'fan', 'FAN05G0438' => 'fan', 'FAN09G2434' => 'fan', 'FAN12G3984' => 'fan', 'FAN14G0798' => 'fan', 'FAN17G0652' => 'fan', 'FAN19G1988' => 'fan', 'FAN22G0632' => 'fan', 'FAN23G0387' => 'fan', 'FAN26G1323' => 'fan', 'FAN28G0666' => 'fan', 'FvH4_1g26080' => 'fve', 'FvH4_3g36780' => 'fve', 'FvH4_4g15270' => 'fve', 'FvH4_6g13490' => 'fve', 'Glyma.01G098700' => 'gma', 'Glyma.03G065900' => 'gma', 'Glyma.03G073754' => 'gma', 'Glyma.03G073758' => 'gma', 'Glyma.03G083200' => 'gma', 'Glyma.03G225500' => 'gma', 'Glyma.05G037766' => 'gma', 'Glyma.07G133500' => 'gma', 'Glyma.10G139400' => 'gma', 'Glyma.10G248900' => 'gma', 'Glyma.11G137800' => 'gma', 'Glyma.12G061300' => 'gma', 'Glyma.13G337900' => 'gma', 'Glyma.15G036600' => 'gma', 'Glyma.18G182800' => 'gma', 'Glyma.19G222500' => 'gma', 'Glyma.20G144800' => 'gma', 'Gohir.A01G222000' => 'ghi', 'Gohir.A03G044000' => 'ghi', 'Gohir.A03G044100' => 'ghi', 'Gohir.A04G083100' => 'ghi', 'Gohir.A07G127200' => 'ghi', 'Gohir.A07G132400' => 'ghi', 'Gohir.A08G000700' => 'ghi', 'Gohir.A11G327300' => 'ghi', 'Gohir.D01G211500' => 'ghi', 'Gohir.D03G123400' => 'ghi', 'Gohir.D03G123500' => 'ghi', 'Gohir.D04G121800' => 'ghi', 'Gohir.D07G131500' => 'ghi', 'Gohir.D07G136600' => 'ghi', 'Gohir.D08G011600' => 'ghi', 'Gohir.D11G346200' => 'ghi', 'Gorai.001G142800' => 'gra', 'Gorai.001G148700' => 'gra', 'Gorai.002G257300' => 'gra', 'Gorai.003G130000' => 'gra', 'Gorai.003G130100' => 'gra', 'Gorai.004G005300' => 'gra', 'Gorai.007G376500' => 'gra', 'Gorai.012G104700' => 'gra', 'GSVIVG01017946001' => 'vvi', 'GSVIVG01024928001' => 'vvi', 'GSVIVG01028227001' => 'vvi', 'GSVIVG01034151001' => 'vvi', 'HanXRQChr05g0135031' => 'han', 'HanXRQChr05g0135041' => 'han', 'HanXRQChr05g0140021' => 'han', 'HanXRQChr06g0178981' => 'han', 'HanXRQChr07g0188251' => 'han', 'HanXRQChr08g0235311' => 'han', 'HanXRQChr09g0271011' => 'han', 'HanXRQChr10g0293321' => 'han', 'HanXRQChr13g0388171' => 'han', 'Haze_00916' => 'cav', 'Haze_05063' => 'cav', 'Haze_20814' => 'cav', 'Haze_24128' => 'cav', 'Hma1.2p1_0745F.1_g212010' => 'hma', 'Hma1.2p1_0757F.1_g213260' => 'hma', 'Hma1.2p1_0936F.1_g238840' => 'hma', 'Hma1.2p1_1735F.1_g299890' => 'hma', 'Hma1.2p1_1861F.1_g305685' => 'hma', 'HPP92_003397' => 'vpl', 'HPP92_012597' => 'vpl', 'HPP92_015520' => 'vpl', 'HPP92_015539' => 'vpl', 'HPP92_020373' => 'vpl', 'Hund04938' => 'sun', 'Hund10677' => 'sun', 'Hund11033' => 'sun', 'Hund12155' => 'sun', 'Lalb_Chr01g0022551' => 'lal', 'Lalb_Chr03g0042341' => 'lal', 'Lalb_Chr07g0192931' => 'lal', 'Lalb_Chr12g0209551' => 'lal', 'Lalb_Chr19g0125251' => 'lal', 'Lalb_Chr19g0137891' => 'lal', 'Lalb_Chr21g0304641' => 'lal', 'Lalb_Chr21g0309881' => 'lal', 'Lj1A5T12' => 'lonja', 'Lj1C148G10' => 'lonja', 'Lj2A93T83' => 'lonja', 'Lj3A738G68' => 'lonja', 'Lj3C966T1' => 'lonja', 'Lj3g0018958' => 'lja', 'Lj3g0021831' => 'lja', 'Lj3g0025443' => 'lja', 'Lj4g0026809' => 'lja', 'Lj5g0012558' => 'lja', 'Lj5g0021586' => 'lja', 'Lsat_1_v5_gn_5_156840' => 'lsa', 'Lsat_1_v5_gn_8_73460' => 'lsa', 'Lsat_1_v5_gn_8_73481' => 'lsa', 'Lsat_1_v5_gn_9_31601' => 'lsa', 'Lsat_1_v5_gn_9_77320' => 'lsa', 'Manes.01G171300' => 'mes', 'Manes.01G171400' => 'mes', 'Manes.01G236100' => 'mes', 'Manes.02G130500' => 'mes', 'Manes.02G130600' => 'mes', 'Manes.03G180200' => 'mes', 'Manes.05G007000' => 'mes', 'Manes.08G084400' => 'mes', 'Manes.09G092600' => 'mes', 'Manes.15G027900' => 'mes', 'MBI04_g40948_MAGBIO' => 'mbi', 'MBI14_g12123_MAGBIO' => 'mbi', 'MBI18_g28915_MAGBIO' => 'mbi', 'MCO09G053' => 'mco', 'MCO11G782' => 'mco', 'MCO15G215' => 'mco', 'MD03G1088500' => 'mdo', 'MD03G1088600' => 'mdo', 'MD04G1130800' => 'mdo', 'MD09G1291700' => 'mdo', 'MD11G1097500' => 'mdo', 'MD11G1097600' => 'mdo', 'MD12G1143900' => 'mdo', 'MD13G1191400' => 'mdo', 'MD16G1191500' => 'mdo', 'Medtr1g085570' => 'mtr', 'Medtr1g104610' => 'mtr', 'Medtr2g097520' => 'mtr', 'Medtr4g021800' => 'mtr', 'Medtr4g021825' => 'mtr', 'Medtr4g064270' => 'mtr', 'Medtr4g064380' => 'mtr', 'Medtr7g062150' => 'mtr', 'MELO3C003138.2' => 'cme', 'MELO3C005187.2' => 'cme', 'MELO3C009252.2' => 'cme', 'MELO3C014481.2' => 'cme', 'MELO3C020616.2' => 'cme', 'MELO3C020617.2' => 'cme', 'MELO3C020618.2' => 'cme', 'Migut.G00328' => 'egut', 'Migut.J00320' => 'egut', 'Migut.L01000' => 'egut', 'Migut.L01953' => 'egut', 'MSTRG.10253' => 'ama', 'MSTRG.19077' => 'ama', 'MSTRG.26780' => 'ama', 'MSTRG.4023' => 'ama', 'MSTRG.5655' => 'ama', 'MSTRG.9992' => 'ama', 'Nitab4.5_0000043g0310' => 'nta', 'Nitab4.5_0000463g0080' => 'nta', 'Nitab4.5_0000705g0170' => 'nta', 'Nitab4.5_0001326g0060' => 'nta', 'Nitab4.5_0001628g0030' => 'nta', 'Nitab4.5_0002103g0110' => 'nta', 'Nitab4.5_0002946g0030' => 'nta', 'Nitab4.5_0004639g0030' => 'nta', 'Nn2g11149' => 'nnu', 'Nn2g13389' => 'nnu', 'Nn4g25326' => 'nnu', 'Nn4g26290' => 'nnu', 'Nn5g29865' => 'nnu', 'Oeu004163.1' => 'oeu', 'Oeu006901.1' => 'oeu', 'Oeu010096.1' => 'oeu', 'Oeu024340.1' => 'oeu', 'Oeu048369.1' => 'oeu', 'Os01g0973000' => 'osa', 'Os03g0273800' => 'osa', 'Os03g0701200' => 'osa', 'Os03g0834050' => 'osa', 'Os07g0634400' => 'osa', 'Peaxi162Scf00092g01414' => 'pax', 'Peaxi162Scf00165g00818' => 'pax', 'Peaxi162Scf00309g00516' => 'pax', 'Peaxi162Scf00774g00218' => 'pax', 'PGR004G1824' => 'pgr', 'PGR004G2606' => 'pgr', 'PGR031G2716' => 'pgr', 'PGR102G2460' => 'pgr', 'PGR142G2599' => 'pgr', 'PGSC0003DMG400000843' => 'stu', 'PGSC0003DMG400008829' => 'stu', 'PGSC0003DMG400030418' => 'stu', 'PGSC0003DMG400031834' => 'stu', 'PGSC0003DMG401028300' => 'stu', 'PGSC0003DMG402028300' => 'stu', 'Phvul.001G219300' => 'pvu', 'Phvul.007G056000' => 'pvu', 'Phvul.007G208000' => 'pvu', 'Phvul.008G119500' => 'pvu', 'Phvul.010G011200' => 'pvu', 'Phvul.010G014800' => 'pvu', 'Phvul.011G062900' => 'pvu', 'Phvul.L007043' => 'pvu', 'Potri.001G242300' => 'ptr', 'Potri.002G185300' => 'ptr', 'Potri.006G086900' => 'ptr', 'Potri.008G151700' => 'ptr', 'Potri.009G033500' => 'ptr', 'Potri.010G089300' => 'ptr', 'Potri.014G110800' => 'ptr', 'Pp3c27_8130' => 'ppa', 'Pp3c6_27410' => 'ppa', 'PRCOL_00001659' => 'pco', 'PRCOL_00001927' => 'pco', 'PRCOL_00003649' => 'pco', 'Prupe.1G011600' => 'ppe', 'Prupe.3G000800' => 'ppe', 'Prupe.3G001100' => 'ppe', 'Prupe.6G072700' => 'ppe', 'Prupe.6G072800' => 'ppe', 'Prupe.6G257300' => 'ppe', 'Prupe.8G033000' => 'ppe', 'Psat0s2633g0080' => 'psa', 'Psat0s3396g0080' => 'psa', 'Psat0s3396g0200' => 'psa', 'Psat3g139080' => 'psa', 'Psat5g285080' => 'psa', 'Psat6g157760' => 'psa', 'Psat6g208440' => 'psa', 'Psat7g215320' => 'psa', 'Psat7g215400' => 'psa', 'Psat7g235600' => 'psa', 'Psat7g235760' => 'psa', 'PSO063G4603' => 'pso', 'PSO210G0182' => 'pso', 'PSO210G0196' => 'pso', 'PSO339G0394' => 'pso', 'PSO339G4127' => 'pso', 'PSO513G0064' => 'pso', 'PSO761G0079' => 'pso', 'QL01p031003' => 'qlo', 'QL01p031078' => 'qlo', 'QL06p003004' => 'qlo', 'QL07p048731' => 'qlo', 'QL09p037427' => 'qlo', 'RcHm_v2.0_Chr3g0466361' => 'rch', 'RcHm_v2.0_Chr3g0485571' => 'rch', 'RcHm_v2.0_Chr4g0416551' => 'rch', 'RcHm_v2.0_Chr5g0065831' => 'rch', 'Rhsim01G0230500' => 'rsi', 'Rhsim05G0194000' => 'rsi', 'Rhsim08G0250400' => 'rsi', 'Sabra02G0131000' => 'sbr', 'Sabra06G0066300' => 'sbr', 'Sabra08G0115500' => 'sbr', 'Sabra09G0023900' => 'sbr', 'Sabra10G0054000' => 'sbr', 'Sabra14G0081500' => 'sbr', 'Sabra16G0147100' => 'sbr', 'SalBow2G2957' => 'sbo', 'SalBow4G3320' => 'sbo', 'SalBow8G1894' => 'sbo', 'Sc07g0007950' => 'sci', 'Sc12g0001360' => 'sci', 'Sc13g0004330' => 'sci', 'Sc20g0005010' => 'sci', 'Sed0000361' => 'sed', 'Sed0001706' => 'sed', 'Sed0002422' => 'sed', 'Sed0004029' => 'sed', 'Sed0004602' => 'sed', 'Sed0004943' => 'sed', 'Sed0008646' => 'sed', 'Sed0023313' => 'sed', 'Sed0024843' => 'sed', 'SEGI_00081' => 'sgi', 'SEGI_00947' => 'sgi', 'SEGI_04046' => 'sgi', 'SEGI_06880' => 'sgi', 'SEGI_09736' => 'sgi', 'SEGI_12741' => 'sgi', 'SEGI_14530' => 'sgi', 'SEGI_20705' => 'sgi', 'SEGI_26088' => 'sgi', 'SEGI_28323' => 'sgi', 'SEGI_33343' => 'sgi', 'SGA_v2.0_scaffold126G33775' => 'sas', 'SGA_v2.0_scaffold2G01337' => 'sas', 'SGA_v2.0_scaffold38G15006' => 'sas', 'SGA_v2.0_scaffold39G15264' => 'sas', 'SGA_v2.0_scaffold453G51880' => 'sas', 'SHI12696' => 'shi', 'SMO367G1096' => 'smo', 'Solyc01g068630.3' => 'sly', 'Solyc05g011880.3' => 'sly', 'Solyc06g076300.3' => 'sly', 'Solyc09g010940.4' => 'sly', 'Solyc09g075890.3' => 'sly', 'Sopen01g030560' => 'spe', 'Sopen05g006630' => 'spe', 'Sopen06g032720' => 'spe', 'Sopen09g005660' => 'spe', 'Sopen09g030690' => 'spe', 'Sp4g14540' => 'spa', 'Sp4g20030' => 'spa', 'Sp5g01320' => 'spa', 'Sp6g21170' => 'spa', 'Sp6g21180' => 'spa', 'Sp6g21190' => 'spa', 'Sp6g40220' => 'spa', 'TAR362G0122' => 'tar', 'TAR362G1338' => 'tar', 'TAR369G0590' => 'tar', 'TAR371G0824' => 'tar', 'TAR622G1429' => 'tar', 'TAR623G0734' => 'tar', 'TAR625G0441' => 'tar', 'TAR629G0976' => 'tar', 'TAR633G1195' => 'tar', 'TAR636G2660' => 'tar', 'THA.LOC104799440' => 'tha', 'THA.LOC104800966' => 'tha', 'THA.LOC104806559' => 'tha', 'THA.LOC104810765' => 'tha', 'THA.LOC104816266' => 'tha', 'THA.LOC104817419' => 'tha', 'THA.LOC104827021' => 'tha', 'Thecc.01G327400' => 'tca', 'Thecc.04G229200' => 'tca', 'Thecc.05G037400' => 'tca', 'Thecc.09G318600' => 'tca', 'Thecc.09G318700' => 'tca', 'Thhalv10006238m.g' => 'esa', 'Thhalv10014321m.g' => 'esa', 'Thhalv10014335m.g' => 'esa', 'Thhalv10015826m.g' => 'esa', 'Thhalv10017107m.g' => 'esa', 'Thhalv10017180m.g' => 'esa', 'Thhalv10029339m.g' => 'esa', 'TPR.G1699' => 'tpr', 'TPR.G23609' => 'tpr', 'TPR.G3081' => 'tpr', 'TPR.G40397' => 'tpr', 'TPR.G5522' => 'tpr', 'TPR.G5618' => 'tpr', 'TPR.G5626' => 'tpr', 'TWI09G1632' => 'twi', 'TWI23G1230' => 'twi', 'TWI53G1064' => 'twi', 'TWI59G0751' => 'twi', 'TWI74G0947' => 'twi', 'TWI77G0337' => 'twi', 'TWI79G1254' => 'twi', 'unitig_0.g2341' => 'ugi', 'unitig_26.g10006' => 'ugi', 'unitig_26.g10008' => 'ugi', 'unitig_26.g9192' => 'ugi', 'vmacro14547' => 'vma', 'vmacro15333' => 'vma', 'vmacro18743' => 'vma', 'vmacro20166' => 'vma', 'VMungo0331G0523' => 'vmu', 'VMungo0331G1202' => 'vmu', 'VMungo0720G1228' => 'vmu', 'VMungo0720G1514' => 'vmu', 'VMungo1080G0169' => 'vmu', 'VMungo1127G1475' => 'vmu', 'VMungo1383G1208' => 'vmu', 'VMungo1383G1698' => 'vmu', 'Zm00001eb012270' => 'zma', 'Zm00001eb054100' => 'zma', 'Zm00001eb063350' => 'zma', 'Zm00001eb328560' => 'zma', 'Zm00001eb342820' => 'zma', 'Zm00001eb362210' => 'zma', 'Zm00001eb397730' => 'zma', 'Zm00001eb399750' => 'zma' ), 'gf_id' => 'HOM05D000959', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000959' ), 'data_identifier' => 'HOM05D000959', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000959', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '622', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p07100' => 'bna', 'A03p11720' => 'bna', 'A05p08300' => 'bna', 'A05p13380' => 'bna', 'A09p54130' => 'bna', 'A10p16690' => 'bna', 'A10p16700' => 'bna', 'A10p33390' => 'bna', 'Aa31LG10G16020' => 'aar', 'Aa31LG1G11810' => 'aar', 'Aa31LG1G11830' => 'aar', 'Aa31LG1G22510' => 'aar', 'Aa31LG5G4890' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5793' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2310' => 'aag', 'Actinidia08499' => 'ach', 'Actinidia11262' => 'ach', 'Actinidia23926' => 'ach', 'Actinidia34420' => 'ach', 'Actinidia36970' => 'ach', 'Ah.02g111220' => 'amhyb', 'Ah.15g097750' => 'amhyb', 'AL4G27500' => 'aly', 'AL6G11470' => 'aly', 'AL8G35950' => 'aly', 'AL8G35960' => 'aly', 'AL8G35970' => 'aly', 'Aqoxy1G00912' => 'aox', 'Aqoxy2G02253' => 'aox', 'Aqoxy2G02411' => 'aox', 'Aqoxy5G00485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BZ66YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K8ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM4FUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6BF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HFV7XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25JBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0YNNV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MAKK6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P70IT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP2Z6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V61LZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YWP64R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3S9AI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7PGHH' => 'arhy', 'AT2G32150' => 'ath', 'AT3G62040' => 'ath', 'AT5G02230' => 'ath', 'AT5G59480' => 'ath', 'AT5G59490' => 'ath', 'ATR0332G060' => 'atr', 'ATR0559G190' => 'atr', 'ATR0693G294' => 'atr', 'Atru.chr3.3975' => 'acertr', 'Atru.chr3.3976' => 'acertr', 'Atru.chr3.3977' => 'acertr', 'Atru.chr4.2498' => 'acertr', 'Atru.chr5.838' => 'acertr', 'Atru.chr8.1990' => 'acertr', 'Atru.chr8.1991' => 'acertr', 'Atru.chr8.1992' => 'acertr', 'AUR62001759' => 'cqu', 'AUR62009545' => 'cqu', 'AUR62010474' => 'cqu', 'AUR62025820' => 'cqu', 'AUR62030422' => 'cqu', 'AUR62033605' => 'cqu', 'AUR62038615' => 'cqu', 'AUR62041347' => 'cqu', 'BcaB01g04574' => 'bca', 'BcaB02g09263' => 'bca', 'BcaB02g10453' => 'bca', 'BcaB05g22513' => 'bca', 'BcaB08g36253' => 'bca', 'BcaB08g36254' => 'bca', 'BcaC01g06519' => 'bca', 'BcaC02g11889' => 'bca', 'BcaC03g14010' => 'bca', 'BcaC03g18439' => 'bca', 'BcaC04g19765' => 'bca', 'BcaC09g48432' => 'bca', 'BcaNung07302' => 'bca', 'BolC2t06040H' => 'bol', 'BolC2t07346H' => 'bol', 'BolC3t13817H' => 'bol', 'BolC4t22625H' => 'bol', 'BolC4t23297H' => 'bol', 'BolC8t51278H' => 'bol', 'BolC9t58050H' => 'bol', 'BolC9t58051H' => 'bol', 'BolC9t60163H' => 'bol', 'BraA02t04712Z' => 'bra', 'BraA02t05791Z' => 'bra', 'BraA03t10483Z' => 'bra', 'BraA05t19795Z' => 'bra', 'BraA05t20276Z' => 'bra', 'BraA09t40827Z' => 'bra', 'BraA10t43750Z' => 'bra', 'BraA10t43751Z' => 'bra', 'BraA10t45370Z' => 'bra', 'C02p00400' => 'bna', 'C02p12460' => 'bna', 'C03p13680' => 'bna', 'C04p10270' => 'bna', 'C04p17500' => 'bna', 'C08p37010' => 'bna', 'C09p51880' => 'bna', 'C09p51890' => 'bna', 'C09p74300' => 'bna', 'CAN.G179.26' => 'can', 'CAN.G3384.1' => 'can', 'CAN.G394.68' => 'can', 'CAN.G907.13' => 'can', 'CANSAT11G0012' => 'cansat', 'CANSAT25G1586' => 'cansat', 'CANSAT35G0735' => 'cansat', 'CANSAT54G0556' => 'cansat', 'CANSAT64G0356' => 'cansat', 'CANSAT78G2042' => 'cansat', 'CARHR125920' => 'chi', 'CARHR131910' => 'chi', 'CARHR172390' => 'chi', 'CARHR211140' => 'chi', 'CARHR285850' => 'chi', 'CARHR285860' => 'chi', 'Carub.0004s1347' => 'cru', 'Carub.0004s1960' => 'cru', 'Carub.0005s2880' => 'cru', 'Carub.0006s0107' => 'cru', 'Carub.0008s2015' => 'cru', 'Carub.0008s2016' => 'cru', 'Carub.0008s2017' => 'cru', 'Ca_01315_v3' => 'car', 'Ca_05063_v3' => 'car', 'Ca_10231_v3' => 'car', 'Ca_10913_v3' => 'car', 'Ca_19156_v3' => 'car', 'Ca_23644_v3' => 'car', 'Ca_26735_v3' => 'car', 'Cc01_g13130' => 'ccan', 'Cc02_g21690' => 'ccan', 'Cc03_g03600' => 'ccan', 'Cc06_g02510' => 'ccan', 'CDE02G1265' => 'cde', 'CDE05G0415' => 'cde', 'CDE08G1082' => 'cde', 'Cfa005780' => 'cfa', 'Cfa011522' => 'cfa', 'Cfa011523' => 'cfa', 'Cfa015627' => 'cfa', 'Cfa017359' => 'cfa', 'Ciclev10005687m.g' => 'ccl', 'Ciclev10012173m.g' => 'ccl', 'Ciclev10021621m.g' => 'ccl', 'Ciclev10028968m.g' => 'ccl', 'Ciclev10029907m.g' => 'ccl', 'CiPaw.01G164800' => 'cil', 'CiPaw.07G083700' => 'cil', 'CiPaw.07G127000' => 'cil', 'CiPaw.07G136900' => 'cil', 'CiPaw.08G081700' => 'cil', 'CiPaw.09G194600' => 'cil', 'CiPaw.10G146500' => 'cil', 'CiPaw.13G091500' => 'cil', 'CiPaw.13G091600' => 'cil', 'ClCG00G003390' => 'cla', 'ClCG01G007220' => 'cla', 'ClCG03G001370' => 'cla', 'ClCG04G008100' => 'cla', 'ClCG06G006110' => 'cla', 'ClCG06G006130' => 'cla', 'ClCG10G021210' => 'cla', 'COL.COLO4_07648' => 'col', 'COL.COLO4_07650' => 'col', 'COL.COLO4_07651' => 'col', 'COL.COLO4_14780' => 'col', 'COL.COLO4_18546' => 'col', 'COL.COLO4_18547' => 'col', 'COL.COLO4_23103' => 'col', 'COL.COLO4_30419' => 'col', 'COL.COLO4_34232' => 'col', 'Cpa.g.sc169.20' => 'cpa', 'Cpa.g.sc57.45' => 'cpa', 'Cpa.g.sc58.124' => 'cpa', 'Cpa.g.sc58.125' => 'cpa', 'Cpa.g.sc81.118' => 'cpa', 'Cpa.g.sc81.119' => 'cpa', 'Cre12.g524700' => 'cre', 'CsaV3_1G034430' => 'csa', 'CsaV3_1G034440' => 'csa', 'CsaV3_1G034450' => 'csa', 'CsaV3_3G034830' => 'csa', 'CsaV3_4G025090' => 'csa', 'CsaV3_5G018660' => 'csa', 'CsaV3_6G038160' => 'csa', 'CSS0003447' => 'camsi', 'CSS0017840' => 'camsi', 'CSS0019260' => 'camsi', 'CSS0040375' => 'camsi', 'CSS0042533' => 'camsi', 'DCAR_005960' => 'dca', 'DCAR_012104' => 'dca', 'DCAR_012105' => 'dca', 'DCAR_012293' => 'dca', 'DCAR_015632' => 'dca', 'DCAR_024602' => 'dca', 'DCAR_028752' => 'dca', 'Dinv06261' => 'din', 'Dinv13982' => 'din', 'Dinv17029' => 'din', 'Dinv18463' => 'din', 'Dinv33181' => 'din', 'Dinv35585' => 'din', 'Dinv37161' => 'din', 'Dinv42977' => 'din', 'Dinv43122' => 'din', 'Dinv44517' => 'din', 'Duzib093G0256' => 'dzi', 'Duzib106G1254' => 'dzi', 'Duzib128G1789' => 'dzi', 'Duzib133G0633' => 'dzi', 'Duzib138G0510' => 'dzi', 'Duzib150G1084' => 'dzi', 'Duzib168G0488' => 'dzi', 'Duzib168G1523' => 'dzi', 'Duzib170G0133' => 'dzi', 'ECA234G1433' => 'eca', 'ECA236G1432' => 'eca', 'ECA236G2256' => 'eca', 'ECA236G2365' => 'eca', 'ECA236G4830' => 'eca', 'ECA248G1505' => 'eca', 'EL10Ac3g06431' => 'bvu', 'EL10Ac5g12577' => 'bvu', 'EL10Ac6g13533' => 'bvu', 'EL10Ac7g16045' => 'bvu', 'Eucgr.A01281' => 'egr', 'Eucgr.B02326' => 'egr', 'Eucgr.H03532' => 'egr', 'Eucgr.K00553' => 'egr', 'Eucgr.K03116' => 'egr', 'FAN02G3963' => 'fan', 'FAN05G0438' => 'fan', 'FAN09G2434' => 'fan', 'FAN12G3984' => 'fan', 'FAN14G0798' => 'fan', 'FAN17G0652' => 'fan', 'FAN19G1988' => 'fan', 'FAN22G0632' => 'fan', 'FAN23G0387' => 'fan', 'FAN26G1323' => 'fan', 'FAN28G0666' => 'fan', 'FvH4_1g26080' => 'fve', 'FvH4_3g36780' => 'fve', 'FvH4_4g15270' => 'fve', 'FvH4_6g13490' => 'fve', 'Glyma.01G098700' => 'gma', 'Glyma.03G065900' => 'gma', 'Glyma.03G073754' => 'gma', 'Glyma.03G073758' => 'gma', 'Glyma.03G083200' => 'gma', 'Glyma.03G225500' => 'gma', 'Glyma.05G037766' => 'gma', 'Glyma.07G133500' => 'gma', 'Glyma.10G139400' => 'gma', 'Glyma.10G248900' => 'gma', 'Glyma.11G137800' => 'gma', 'Glyma.12G061300' => 'gma', 'Glyma.13G337900' => 'gma', 'Glyma.15G036600' => 'gma', 'Glyma.18G182800' => 'gma', 'Glyma.19G222500' => 'gma', 'Glyma.20G144800' => 'gma', 'Gohir.A01G222000' => 'ghi', 'Gohir.A03G044000' => 'ghi', 'Gohir.A03G044100' => 'ghi', 'Gohir.A04G083100' => 'ghi', 'Gohir.A07G127200' => 'ghi', 'Gohir.A07G132400' => 'ghi', 'Gohir.A08G000700' => 'ghi', 'Gohir.A11G327300' => 'ghi', 'Gohir.D01G211500' => 'ghi', 'Gohir.D03G123400' => 'ghi', 'Gohir.D03G123500' => 'ghi', 'Gohir.D04G121800' => 'ghi', 'Gohir.D07G131500' => 'ghi', 'Gohir.D07G136600' => 'ghi', 'Gohir.D08G011600' => 'ghi', 'Gohir.D11G346200' => 'ghi', 'Gorai.001G142800' => 'gra', 'Gorai.001G148700' => 'gra', 'Gorai.002G257300' => 'gra', 'Gorai.003G130000' => 'gra', 'Gorai.003G130100' => 'gra', 'Gorai.004G005300' => 'gra', 'Gorai.007G376500' => 'gra', 'Gorai.012G104700' => 'gra', 'GSVIVG01017946001' => 'vvi', 'GSVIVG01024928001' => 'vvi', 'GSVIVG01028227001' => 'vvi', 'GSVIVG01034151001' => 'vvi', 'HanXRQChr05g0135031' => 'han', 'HanXRQChr05g0135041' => 'han', 'HanXRQChr05g0140021' => 'han', 'HanXRQChr06g0178981' => 'han', 'HanXRQChr07g0188251' => 'han', 'HanXRQChr08g0235311' => 'han', 'HanXRQChr09g0271011' => 'han', 'HanXRQChr10g0293321' => 'han', 'HanXRQChr13g0388171' => 'han', 'Haze_00916' => 'cav', 'Haze_05063' => 'cav', 'Haze_20814' => 'cav', 'Haze_24128' => 'cav', 'Hma1.2p1_0745F.1_g212010' => 'hma', 'Hma1.2p1_0757F.1_g213260' => 'hma', 'Hma1.2p1_0936F.1_g238840' => 'hma', 'Hma1.2p1_1735F.1_g299890' => 'hma', 'Hma1.2p1_1861F.1_g305685' => 'hma', 'HPP92_003397' => 'vpl', 'HPP92_012597' => 'vpl', 'HPP92_015520' => 'vpl', 'HPP92_015539' => 'vpl', 'HPP92_020373' => 'vpl', 'Hund04938' => 'sun', 'Hund10677' => 'sun', 'Hund11033' => 'sun', 'Hund12155' => 'sun', 'Lalb_Chr01g0022551' => 'lal', 'Lalb_Chr03g0042341' => 'lal', 'Lalb_Chr07g0192931' => 'lal', 'Lalb_Chr12g0209551' => 'lal', 'Lalb_Chr19g0125251' => 'lal', 'Lalb_Chr19g0137891' => 'lal', 'Lalb_Chr21g0304641' => 'lal', 'Lalb_Chr21g0309881' => 'lal', 'Lj1A5T12' => 'lonja', 'Lj1C148G10' => 'lonja', 'Lj2A93T83' => 'lonja', 'Lj3A738G68' => 'lonja', 'Lj3C966T1' => 'lonja', 'Lj3g0018958' => 'lja', 'Lj3g0021831' => 'lja', 'Lj3g0025443' => 'lja', 'Lj4g0026809' => 'lja', 'Lj5g0012558' => 'lja', 'Lj5g0021586' => 'lja', 'Lsat_1_v5_gn_5_156840' => 'lsa', 'Lsat_1_v5_gn_8_73460' => 'lsa', 'Lsat_1_v5_gn_8_73481' => 'lsa', 'Lsat_1_v5_gn_9_31601' => 'lsa', 'Lsat_1_v5_gn_9_77320' => 'lsa', 'Manes.01G171300' => 'mes', 'Manes.01G171400' => 'mes', 'Manes.01G236100' => 'mes', 'Manes.02G130500' => 'mes', 'Manes.02G130600' => 'mes', 'Manes.03G180200' => 'mes', 'Manes.05G007000' => 'mes', 'Manes.08G084400' => 'mes', 'Manes.09G092600' => 'mes', 'Manes.15G027900' => 'mes', 'MBI04_g40948_MAGBIO' => 'mbi', 'MBI14_g12123_MAGBIO' => 'mbi', 'MBI18_g28915_MAGBIO' => 'mbi', 'MCO09G053' => 'mco', 'MCO11G782' => 'mco', 'MCO15G215' => 'mco', 'MD03G1088500' => 'mdo', 'MD03G1088600' => 'mdo', 'MD04G1130800' => 'mdo', 'MD09G1291700' => 'mdo', 'MD11G1097500' => 'mdo', 'MD11G1097600' => 'mdo', 'MD12G1143900' => 'mdo', 'MD13G1191400' => 'mdo', 'MD16G1191500' => 'mdo', 'Medtr1g085570' => 'mtr', 'Medtr1g104610' => 'mtr', 'Medtr2g097520' => 'mtr', 'Medtr4g021800' => 'mtr', 'Medtr4g021825' => 'mtr', 'Medtr4g064270' => 'mtr', 'Medtr4g064380' => 'mtr', 'Medtr7g062150' => 'mtr', 'MELO3C003138.2' => 'cme', 'MELO3C005187.2' => 'cme', 'MELO3C009252.2' => 'cme', 'MELO3C014481.2' => 'cme', 'MELO3C020616.2' => 'cme', 'MELO3C020617.2' => 'cme', 'MELO3C020618.2' => 'cme', 'Migut.G00328' => 'egut', 'Migut.J00320' => 'egut', 'Migut.L01000' => 'egut', 'Migut.L01953' => 'egut', 'MSTRG.10253' => 'ama', 'MSTRG.19077' => 'ama', 'MSTRG.26780' => 'ama', 'MSTRG.4023' => 'ama', 'MSTRG.5655' => 'ama', 'MSTRG.9992' => 'ama', 'Nitab4.5_0000043g0310' => 'nta', 'Nitab4.5_0000463g0080' => 'nta', 'Nitab4.5_0000705g0170' => 'nta', 'Nitab4.5_0001326g0060' => 'nta', 'Nitab4.5_0001628g0030' => 'nta', 'Nitab4.5_0002103g0110' => 'nta', 'Nitab4.5_0002946g0030' => 'nta', 'Nitab4.5_0004639g0030' => 'nta', 'Nn2g11149' => 'nnu', 'Nn2g13389' => 'nnu', 'Nn4g25326' => 'nnu', 'Nn4g26290' => 'nnu', 'Nn5g29865' => 'nnu', 'Oeu004163.1' => 'oeu', 'Oeu006901.1' => 'oeu', 'Oeu010096.1' => 'oeu', 'Oeu024340.1' => 'oeu', 'Oeu048369.1' => 'oeu', 'Os01g0973000' => 'osa', 'Os03g0273800' => 'osa', 'Os03g0701200' => 'osa', 'Os03g0834050' => 'osa', 'Os07g0634400' => 'osa', 'Peaxi162Scf00092g01414' => 'pax', 'Peaxi162Scf00165g00818' => 'pax', 'Peaxi162Scf00309g00516' => 'pax', 'Peaxi162Scf00774g00218' => 'pax', 'PGR004G1824' => 'pgr', 'PGR004G2606' => 'pgr', 'PGR031G2716' => 'pgr', 'PGR102G2460' => 'pgr', 'PGR142G2599' => 'pgr', 'PGSC0003DMG400000843' => 'stu', 'PGSC0003DMG400008829' => 'stu', 'PGSC0003DMG400030418' => 'stu', 'PGSC0003DMG400031834' => 'stu', 'PGSC0003DMG401028300' => 'stu', 'PGSC0003DMG402028300' => 'stu', 'Phvul.001G219300' => 'pvu', 'Phvul.007G056000' => 'pvu', 'Phvul.007G208000' => 'pvu', 'Phvul.008G119500' => 'pvu', 'Phvul.010G011200' => 'pvu', 'Phvul.010G014800' => 'pvu', 'Phvul.011G062900' => 'pvu', 'Phvul.L007043' => 'pvu', 'Potri.001G242300' => 'ptr', 'Potri.002G185300' => 'ptr', 'Potri.006G086900' => 'ptr', 'Potri.008G151700' => 'ptr', 'Potri.009G033500' => 'ptr', 'Potri.010G089300' => 'ptr', 'Potri.014G110800' => 'ptr', 'Pp3c27_8130' => 'ppa', 'Pp3c6_27410' => 'ppa', 'PRCOL_00001659' => 'pco', 'PRCOL_00001927' => 'pco', 'PRCOL_00003649' => 'pco', 'Prupe.1G011600' => 'ppe', 'Prupe.3G000800' => 'ppe', 'Prupe.3G001100' => 'ppe', 'Prupe.6G072700' => 'ppe', 'Prupe.6G072800' => 'ppe', 'Prupe.6G257300' => 'ppe', 'Prupe.8G033000' => 'ppe', 'Psat0s2633g0080' => 'psa', 'Psat0s3396g0080' => 'psa', 'Psat0s3396g0200' => 'psa', 'Psat3g139080' => 'psa', 'Psat5g285080' => 'psa', 'Psat6g157760' => 'psa', 'Psat6g208440' => 'psa', 'Psat7g215320' => 'psa', 'Psat7g215400' => 'psa', 'Psat7g235600' => 'psa', 'Psat7g235760' => 'psa', 'PSO063G4603' => 'pso', 'PSO210G0182' => 'pso', 'PSO210G0196' => 'pso', 'PSO339G0394' => 'pso', 'PSO339G4127' => 'pso', 'PSO513G0064' => 'pso', 'PSO761G0079' => 'pso', 'QL01p031003' => 'qlo', 'QL01p031078' => 'qlo', 'QL06p003004' => 'qlo', 'QL07p048731' => 'qlo', 'QL09p037427' => 'qlo', 'RcHm_v2.0_Chr3g0466361' => 'rch', 'RcHm_v2.0_Chr3g0485571' => 'rch', 'RcHm_v2.0_Chr4g0416551' => 'rch', 'RcHm_v2.0_Chr5g0065831' => 'rch', 'Rhsim01G0230500' => 'rsi', 'Rhsim05G0194000' => 'rsi', 'Rhsim08G0250400' => 'rsi', 'Sabra02G0131000' => 'sbr', 'Sabra06G0066300' => 'sbr', 'Sabra08G0115500' => 'sbr', 'Sabra09G0023900' => 'sbr', 'Sabra10G0054000' => 'sbr', 'Sabra14G0081500' => 'sbr', 'Sabra16G0147100' => 'sbr', 'SalBow2G2957' => 'sbo', 'SalBow4G3320' => 'sbo', 'SalBow8G1894' => 'sbo', 'Sc07g0007950' => 'sci', 'Sc12g0001360' => 'sci', 'Sc13g0004330' => 'sci', 'Sc20g0005010' => 'sci', 'Sed0000361' => 'sed', 'Sed0001706' => 'sed', 'Sed0002422' => 'sed', 'Sed0004029' => 'sed', 'Sed0004602' => 'sed', 'Sed0004943' => 'sed', 'Sed0008646' => 'sed', 'Sed0023313' => 'sed', 'Sed0024843' => 'sed', 'SEGI_00081' => 'sgi', 'SEGI_00947' => 'sgi', 'SEGI_04046' => 'sgi', 'SEGI_06880' => 'sgi', 'SEGI_09736' => 'sgi', 'SEGI_12741' => 'sgi', 'SEGI_14530' => 'sgi', 'SEGI_20705' => 'sgi', 'SEGI_26088' => 'sgi', 'SEGI_28323' => 'sgi', 'SEGI_33343' => 'sgi', 'SGA_v2.0_scaffold126G33775' => 'sas', 'SGA_v2.0_scaffold2G01337' => 'sas', 'SGA_v2.0_scaffold38G15006' => 'sas', 'SGA_v2.0_scaffold39G15264' => 'sas', 'SGA_v2.0_scaffold453G51880' => 'sas', 'SHI12696' => 'shi', 'SMO367G1096' => 'smo', 'Solyc01g068630.3' => 'sly', 'Solyc05g011880.3' => 'sly', 'Solyc06g076300.3' => 'sly', 'Solyc09g010940.4' => 'sly', 'Solyc09g075890.3' => 'sly', 'Sopen01g030560' => 'spe', 'Sopen05g006630' => 'spe', 'Sopen06g032720' => 'spe', 'Sopen09g005660' => 'spe', 'Sopen09g030690' => 'spe', 'Sp4g14540' => 'spa', 'Sp4g20030' => 'spa', 'Sp5g01320' => 'spa', 'Sp6g21170' => 'spa', 'Sp6g21180' => 'spa', 'Sp6g21190' => 'spa', 'Sp6g40220' => 'spa', 'TAR362G0122' => 'tar', 'TAR362G1338' => 'tar', 'TAR369G0590' => 'tar', 'TAR371G0824' => 'tar', 'TAR622G1429' => 'tar', 'TAR623G0734' => 'tar', 'TAR625G0441' => 'tar', 'TAR629G0976' => 'tar', 'TAR633G1195' => 'tar', 'TAR636G2660' => 'tar', 'THA.LOC104799440' => 'tha', 'THA.LOC104800966' => 'tha', 'THA.LOC104806559' => 'tha', 'THA.LOC104810765' => 'tha', 'THA.LOC104816266' => 'tha', 'THA.LOC104817419' => 'tha', 'THA.LOC104827021' => 'tha', 'Thecc.01G327400' => 'tca', 'Thecc.04G229200' => 'tca', 'Thecc.05G037400' => 'tca', 'Thecc.09G318600' => 'tca', 'Thecc.09G318700' => 'tca', 'Thhalv10006238m.g' => 'esa', 'Thhalv10014321m.g' => 'esa', 'Thhalv10014335m.g' => 'esa', 'Thhalv10015826m.g' => 'esa', 'Thhalv10017107m.g' => 'esa', 'Thhalv10017180m.g' => 'esa', 'Thhalv10029339m.g' => 'esa', 'TPR.G1699' => 'tpr', 'TPR.G23609' => 'tpr', 'TPR.G3081' => 'tpr', 'TPR.G40397' => 'tpr', 'TPR.G5522' => 'tpr', 'TPR.G5618' => 'tpr', 'TPR.G5626' => 'tpr', 'TWI09G1632' => 'twi', 'TWI23G1230' => 'twi', 'TWI53G1064' => 'twi', 'TWI59G0751' => 'twi', 'TWI74G0947' => 'twi', 'TWI77G0337' => 'twi', 'TWI79G1254' => 'twi', 'unitig_0.g2341' => 'ugi', 'unitig_26.g10006' => 'ugi', 'unitig_26.g10008' => 'ugi', 'unitig_26.g9192' => 'ugi', 'vmacro14547' => 'vma', 'vmacro15333' => 'vma', 'vmacro18743' => 'vma', 'vmacro20166' => 'vma', 'VMungo0331G0523' => 'vmu', 'VMungo0331G1202' => 'vmu', 'VMungo0720G1228' => 'vmu', 'VMungo0720G1514' => 'vmu', 'VMungo1080G0169' => 'vmu', 'VMungo1127G1475' => 'vmu', 'VMungo1383G1208' => 'vmu', 'VMungo1383G1698' => 'vmu', 'Zm00001eb012270' => 'zma', 'Zm00001eb054100' => 'zma', 'Zm00001eb063350' => 'zma', 'Zm00001eb328560' => 'zma', 'Zm00001eb342820' => 'zma', 'Zm00001eb362210' => 'zma', 'Zm00001eb397730' => 'zma', 'Zm00001eb399750' => 'zma' ) $gf_id = 'HOM05D000959' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000959' ) $data_identifier = 'HOM05D000959' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 5, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 5, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 10, 'mbi' => (int) 3, 'mco' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 2, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 3, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 11, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399750' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000959', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '622', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p07100' => 'bna', 'A03p11720' => 'bna', 'A05p08300' => 'bna', 'A05p13380' => 'bna', 'A09p54130' => 'bna', 'A10p16690' => 'bna', 'A10p16700' => 'bna', 'A10p33390' => 'bna', 'Aa31LG10G16020' => 'aar', 'Aa31LG1G11810' => 'aar', 'Aa31LG1G11830' => 'aar', 'Aa31LG1G22510' => 'aar', 'Aa31LG5G4890' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5793' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2310' => 'aag', 'Actinidia08499' => 'ach', 'Actinidia11262' => 'ach', 'Actinidia23926' => 'ach', 'Actinidia34420' => 'ach', 'Actinidia36970' => 'ach', 'Ah.02g111220' => 'amhyb', 'Ah.15g097750' => 'amhyb', 'AL4G27500' => 'aly', 'AL6G11470' => 'aly', 'AL8G35950' => 'aly', 'AL8G35960' => 'aly', 'AL8G35970' => 'aly', 'Aqoxy1G00912' => 'aox', 'Aqoxy2G02253' => 'aox', 'Aqoxy2G02411' => 'aox', 'Aqoxy5G00485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BZ66YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K8ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM4FUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6BF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HFV7XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25JBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0YNNV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MAKK6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P70IT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP2Z6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V61LZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YWP64R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3S9AI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7PGHH' => 'arhy', 'AT2G32150' => 'ath', 'AT3G62040' => 'ath', 'AT5G02230' => 'ath', 'AT5G59480' => 'ath', 'AT5G59490' => 'ath', 'ATR0332G060' => 'atr', 'ATR0559G190' => 'atr', 'ATR0693G294' => 'atr', 'Atru.chr3.3975' => 'acertr', 'Atru.chr3.3976' => 'acertr', 'Atru.chr3.3977' => 'acertr', 'Atru.chr4.2498' => 'acertr', 'Atru.chr5.838' => 'acertr', 'Atru.chr8.1990' => 'acertr', 'Atru.chr8.1991' => 'acertr', 'Atru.chr8.1992' => 'acertr', 'AUR62001759' => 'cqu', 'AUR62009545' => 'cqu', 'AUR62010474' => 'cqu', 'AUR62025820' => 'cqu', 'AUR62030422' => 'cqu', 'AUR62033605' => 'cqu', 'AUR62038615' => 'cqu', 'AUR62041347' => 'cqu', 'BcaB01g04574' => 'bca', 'BcaB02g09263' => 'bca', 'BcaB02g10453' => 'bca', 'BcaB05g22513' => 'bca', 'BcaB08g36253' => 'bca', 'BcaB08g36254' => 'bca', 'BcaC01g06519' => 'bca', 'BcaC02g11889' => 'bca', 'BcaC03g14010' => 'bca', 'BcaC03g18439' => 'bca', 'BcaC04g19765' => 'bca', 'BcaC09g48432' => 'bca', 'BcaNung07302' => 'bca', 'BolC2t06040H' => 'bol', 'BolC2t07346H' => 'bol', 'BolC3t13817H' => 'bol', 'BolC4t22625H' => 'bol', 'BolC4t23297H' => 'bol', 'BolC8t51278H' => 'bol', 'BolC9t58050H' => 'bol', 'BolC9t58051H' => 'bol', 'BolC9t60163H' => 'bol', 'BraA02t04712Z' => 'bra', 'BraA02t05791Z' => 'bra', 'BraA03t10483Z' => 'bra', 'BraA05t19795Z' => 'bra', 'BraA05t20276Z' => 'bra', 'BraA09t40827Z' => 'bra', 'BraA10t43750Z' => 'bra', 'BraA10t43751Z' => 'bra', 'BraA10t45370Z' => 'bra', 'C02p00400' => 'bna', 'C02p12460' => 'bna', 'C03p13680' => 'bna', 'C04p10270' => 'bna', 'C04p17500' => 'bna', 'C08p37010' => 'bna', 'C09p51880' => 'bna', 'C09p51890' => 'bna', 'C09p74300' => 'bna', 'CAN.G179.26' => 'can', 'CAN.G3384.1' => 'can', 'CAN.G394.68' => 'can', 'CAN.G907.13' => 'can', 'CANSAT11G0012' => 'cansat', 'CANSAT25G1586' => 'cansat', 'CANSAT35G0735' => 'cansat', 'CANSAT54G0556' => 'cansat', 'CANSAT64G0356' => 'cansat', 'CANSAT78G2042' => 'cansat', 'CARHR125920' => 'chi', 'CARHR131910' => 'chi', 'CARHR172390' => 'chi', 'CARHR211140' => 'chi', 'CARHR285850' => 'chi', 'CARHR285860' => 'chi', 'Carub.0004s1347' => 'cru', 'Carub.0004s1960' => 'cru', 'Carub.0005s2880' => 'cru', 'Carub.0006s0107' => 'cru', 'Carub.0008s2015' => 'cru', 'Carub.0008s2016' => 'cru', 'Carub.0008s2017' => 'cru', 'Ca_01315_v3' => 'car', 'Ca_05063_v3' => 'car', 'Ca_10231_v3' => 'car', 'Ca_10913_v3' => 'car', 'Ca_19156_v3' => 'car', 'Ca_23644_v3' => 'car', 'Ca_26735_v3' => 'car', 'Cc01_g13130' => 'ccan', 'Cc02_g21690' => 'ccan', 'Cc03_g03600' => 'ccan', 'Cc06_g02510' => 'ccan', 'CDE02G1265' => 'cde', 'CDE05G0415' => 'cde', 'CDE08G1082' => 'cde', 'Cfa005780' => 'cfa', 'Cfa011522' => 'cfa', 'Cfa011523' => 'cfa', 'Cfa015627' => 'cfa', 'Cfa017359' => 'cfa', 'Ciclev10005687m.g' => 'ccl', 'Ciclev10012173m.g' => 'ccl', 'Ciclev10021621m.g' => 'ccl', 'Ciclev10028968m.g' => 'ccl', 'Ciclev10029907m.g' => 'ccl', 'CiPaw.01G164800' => 'cil', 'CiPaw.07G083700' => 'cil', 'CiPaw.07G127000' => 'cil', 'CiPaw.07G136900' => 'cil', 'CiPaw.08G081700' => 'cil', 'CiPaw.09G194600' => 'cil', 'CiPaw.10G146500' => 'cil', 'CiPaw.13G091500' => 'cil', 'CiPaw.13G091600' => 'cil', 'ClCG00G003390' => 'cla', 'ClCG01G007220' => 'cla', 'ClCG03G001370' => 'cla', 'ClCG04G008100' => 'cla', 'ClCG06G006110' => 'cla', 'ClCG06G006130' => 'cla', 'ClCG10G021210' => 'cla', 'COL.COLO4_07648' => 'col', 'COL.COLO4_07650' => 'col', 'COL.COLO4_07651' => 'col', 'COL.COLO4_14780' => 'col', 'COL.COLO4_18546' => 'col', 'COL.COLO4_18547' => 'col', 'COL.COLO4_23103' => 'col', 'COL.COLO4_30419' => 'col', 'COL.COLO4_34232' => 'col', 'Cpa.g.sc169.20' => 'cpa', 'Cpa.g.sc57.45' => 'cpa', 'Cpa.g.sc58.124' => 'cpa', 'Cpa.g.sc58.125' => 'cpa', 'Cpa.g.sc81.118' => 'cpa', 'Cpa.g.sc81.119' => 'cpa', 'Cre12.g524700' => 'cre', 'CsaV3_1G034430' => 'csa', 'CsaV3_1G034440' => 'csa', 'CsaV3_1G034450' => 'csa', 'CsaV3_3G034830' => 'csa', 'CsaV3_4G025090' => 'csa', 'CsaV3_5G018660' => 'csa', 'CsaV3_6G038160' => 'csa', 'CSS0003447' => 'camsi', 'CSS0017840' => 'camsi', 'CSS0019260' => 'camsi', 'CSS0040375' => 'camsi', 'CSS0042533' => 'camsi', 'DCAR_005960' => 'dca', 'DCAR_012104' => 'dca', 'DCAR_012105' => 'dca', 'DCAR_012293' => 'dca', 'DCAR_015632' => 'dca', 'DCAR_024602' => 'dca', 'DCAR_028752' => 'dca', 'Dinv06261' => 'din', 'Dinv13982' => 'din', 'Dinv17029' => 'din', 'Dinv18463' => 'din', 'Dinv33181' => 'din', 'Dinv35585' => 'din', 'Dinv37161' => 'din', 'Dinv42977' => 'din', 'Dinv43122' => 'din', 'Dinv44517' => 'din', 'Duzib093G0256' => 'dzi', 'Duzib106G1254' => 'dzi', 'Duzib128G1789' => 'dzi', 'Duzib133G0633' => 'dzi', 'Duzib138G0510' => 'dzi', 'Duzib150G1084' => 'dzi', 'Duzib168G0488' => 'dzi', 'Duzib168G1523' => 'dzi', 'Duzib170G0133' => 'dzi', 'ECA234G1433' => 'eca', 'ECA236G1432' => 'eca', 'ECA236G2256' => 'eca', 'ECA236G2365' => 'eca', 'ECA236G4830' => 'eca', 'ECA248G1505' => 'eca', 'EL10Ac3g06431' => 'bvu', 'EL10Ac5g12577' => 'bvu', 'EL10Ac6g13533' => 'bvu', 'EL10Ac7g16045' => 'bvu', 'Eucgr.A01281' => 'egr', 'Eucgr.B02326' => 'egr', 'Eucgr.H03532' => 'egr', 'Eucgr.K00553' => 'egr', 'Eucgr.K03116' => 'egr', 'FAN02G3963' => 'fan', 'FAN05G0438' => 'fan', 'FAN09G2434' => 'fan', 'FAN12G3984' => 'fan', 'FAN14G0798' => 'fan', 'FAN17G0652' => 'fan', 'FAN19G1988' => 'fan', 'FAN22G0632' => 'fan', 'FAN23G0387' => 'fan', 'FAN26G1323' => 'fan', 'FAN28G0666' => 'fan', 'FvH4_1g26080' => 'fve', 'FvH4_3g36780' => 'fve', 'FvH4_4g15270' => 'fve', 'FvH4_6g13490' => 'fve', 'Glyma.01G098700' => 'gma', 'Glyma.03G065900' => 'gma', 'Glyma.03G073754' => 'gma', 'Glyma.03G073758' => 'gma', 'Glyma.03G083200' => 'gma', 'Glyma.03G225500' => 'gma', 'Glyma.05G037766' => 'gma', 'Glyma.07G133500' => 'gma', 'Glyma.10G139400' => 'gma', 'Glyma.10G248900' => 'gma', 'Glyma.11G137800' => 'gma', 'Glyma.12G061300' => 'gma', 'Glyma.13G337900' => 'gma', 'Glyma.15G036600' => 'gma', 'Glyma.18G182800' => 'gma', 'Glyma.19G222500' => 'gma', 'Glyma.20G144800' => 'gma', 'Gohir.A01G222000' => 'ghi', 'Gohir.A03G044000' => 'ghi', 'Gohir.A03G044100' => 'ghi', 'Gohir.A04G083100' => 'ghi', 'Gohir.A07G127200' => 'ghi', 'Gohir.A07G132400' => 'ghi', 'Gohir.A08G000700' => 'ghi', 'Gohir.A11G327300' => 'ghi', 'Gohir.D01G211500' => 'ghi', 'Gohir.D03G123400' => 'ghi', 'Gohir.D03G123500' => 'ghi', 'Gohir.D04G121800' => 'ghi', 'Gohir.D07G131500' => 'ghi', 'Gohir.D07G136600' => 'ghi', 'Gohir.D08G011600' => 'ghi', 'Gohir.D11G346200' => 'ghi', 'Gorai.001G142800' => 'gra', 'Gorai.001G148700' => 'gra', 'Gorai.002G257300' => 'gra', 'Gorai.003G130000' => 'gra', 'Gorai.003G130100' => 'gra', 'Gorai.004G005300' => 'gra', 'Gorai.007G376500' => 'gra', 'Gorai.012G104700' => 'gra', 'GSVIVG01017946001' => 'vvi', 'GSVIVG01024928001' => 'vvi', 'GSVIVG01028227001' => 'vvi', 'GSVIVG01034151001' => 'vvi', 'HanXRQChr05g0135031' => 'han', 'HanXRQChr05g0135041' => 'han', 'HanXRQChr05g0140021' => 'han', 'HanXRQChr06g0178981' => 'han', 'HanXRQChr07g0188251' => 'han', 'HanXRQChr08g0235311' => 'han', 'HanXRQChr09g0271011' => 'han', 'HanXRQChr10g0293321' => 'han', 'HanXRQChr13g0388171' => 'han', 'Haze_00916' => 'cav', 'Haze_05063' => 'cav', 'Haze_20814' => 'cav', 'Haze_24128' => 'cav', 'Hma1.2p1_0745F.1_g212010' => 'hma', 'Hma1.2p1_0757F.1_g213260' => 'hma', 'Hma1.2p1_0936F.1_g238840' => 'hma', 'Hma1.2p1_1735F.1_g299890' => 'hma', 'Hma1.2p1_1861F.1_g305685' => 'hma', 'HPP92_003397' => 'vpl', 'HPP92_012597' => 'vpl', 'HPP92_015520' => 'vpl', 'HPP92_015539' => 'vpl', 'HPP92_020373' => 'vpl', 'Hund04938' => 'sun', 'Hund10677' => 'sun', 'Hund11033' => 'sun', 'Hund12155' => 'sun', 'Lalb_Chr01g0022551' => 'lal', 'Lalb_Chr03g0042341' => 'lal', 'Lalb_Chr07g0192931' => 'lal', 'Lalb_Chr12g0209551' => 'lal', 'Lalb_Chr19g0125251' => 'lal', 'Lalb_Chr19g0137891' => 'lal', 'Lalb_Chr21g0304641' => 'lal', 'Lalb_Chr21g0309881' => 'lal', 'Lj1A5T12' => 'lonja', 'Lj1C148G10' => 'lonja', 'Lj2A93T83' => 'lonja', 'Lj3A738G68' => 'lonja', 'Lj3C966T1' => 'lonja', 'Lj3g0018958' => 'lja', 'Lj3g0021831' => 'lja', 'Lj3g0025443' => 'lja', 'Lj4g0026809' => 'lja', 'Lj5g0012558' => 'lja', 'Lj5g0021586' => 'lja', 'Lsat_1_v5_gn_5_156840' => 'lsa', 'Lsat_1_v5_gn_8_73460' => 'lsa', 'Lsat_1_v5_gn_8_73481' => 'lsa', 'Lsat_1_v5_gn_9_31601' => 'lsa', 'Lsat_1_v5_gn_9_77320' => 'lsa', 'Manes.01G171300' => 'mes', 'Manes.01G171400' => 'mes', 'Manes.01G236100' => 'mes', 'Manes.02G130500' => 'mes', 'Manes.02G130600' => 'mes', 'Manes.03G180200' => 'mes', 'Manes.05G007000' => 'mes', 'Manes.08G084400' => 'mes', 'Manes.09G092600' => 'mes', 'Manes.15G027900' => 'mes', 'MBI04_g40948_MAGBIO' => 'mbi', 'MBI14_g12123_MAGBIO' => 'mbi', 'MBI18_g28915_MAGBIO' => 'mbi', 'MCO09G053' => 'mco', 'MCO11G782' => 'mco', 'MCO15G215' => 'mco', 'MD03G1088500' => 'mdo', 'MD03G1088600' => 'mdo', 'MD04G1130800' => 'mdo', 'MD09G1291700' => 'mdo', 'MD11G1097500' => 'mdo', 'MD11G1097600' => 'mdo', 'MD12G1143900' => 'mdo', 'MD13G1191400' => 'mdo', 'MD16G1191500' => 'mdo', 'Medtr1g085570' => 'mtr', 'Medtr1g104610' => 'mtr', 'Medtr2g097520' => 'mtr', 'Medtr4g021800' => 'mtr', 'Medtr4g021825' => 'mtr', 'Medtr4g064270' => 'mtr', 'Medtr4g064380' => 'mtr', 'Medtr7g062150' => 'mtr', 'MELO3C003138.2' => 'cme', 'MELO3C005187.2' => 'cme', 'MELO3C009252.2' => 'cme', 'MELO3C014481.2' => 'cme', 'MELO3C020616.2' => 'cme', 'MELO3C020617.2' => 'cme', 'MELO3C020618.2' => 'cme', 'Migut.G00328' => 'egut', 'Migut.J00320' => 'egut', 'Migut.L01000' => 'egut', 'Migut.L01953' => 'egut', 'MSTRG.10253' => 'ama', 'MSTRG.19077' => 'ama', 'MSTRG.26780' => 'ama', 'MSTRG.4023' => 'ama', 'MSTRG.5655' => 'ama', 'MSTRG.9992' => 'ama', 'Nitab4.5_0000043g0310' => 'nta', 'Nitab4.5_0000463g0080' => 'nta', 'Nitab4.5_0000705g0170' => 'nta', 'Nitab4.5_0001326g0060' => 'nta', 'Nitab4.5_0001628g0030' => 'nta', 'Nitab4.5_0002103g0110' => 'nta', 'Nitab4.5_0002946g0030' => 'nta', 'Nitab4.5_0004639g0030' => 'nta', 'Nn2g11149' => 'nnu', 'Nn2g13389' => 'nnu', 'Nn4g25326' => 'nnu', 'Nn4g26290' => 'nnu', 'Nn5g29865' => 'nnu', 'Oeu004163.1' => 'oeu', 'Oeu006901.1' => 'oeu', 'Oeu010096.1' => 'oeu', 'Oeu024340.1' => 'oeu', 'Oeu048369.1' => 'oeu', 'Os01g0973000' => 'osa', 'Os03g0273800' => 'osa', 'Os03g0701200' => 'osa', 'Os03g0834050' => 'osa', 'Os07g0634400' => 'osa', 'Peaxi162Scf00092g01414' => 'pax', 'Peaxi162Scf00165g00818' => 'pax', 'Peaxi162Scf00309g00516' => 'pax', 'Peaxi162Scf00774g00218' => 'pax', 'PGR004G1824' => 'pgr', 'PGR004G2606' => 'pgr', 'PGR031G2716' => 'pgr', 'PGR102G2460' => 'pgr', 'PGR142G2599' => 'pgr', 'PGSC0003DMG400000843' => 'stu', 'PGSC0003DMG400008829' => 'stu', 'PGSC0003DMG400030418' => 'stu', 'PGSC0003DMG400031834' => 'stu', 'PGSC0003DMG401028300' => 'stu', 'PGSC0003DMG402028300' => 'stu', 'Phvul.001G219300' => 'pvu', 'Phvul.007G056000' => 'pvu', 'Phvul.007G208000' => 'pvu', 'Phvul.008G119500' => 'pvu', 'Phvul.010G011200' => 'pvu', 'Phvul.010G014800' => 'pvu', 'Phvul.011G062900' => 'pvu', 'Phvul.L007043' => 'pvu', 'Potri.001G242300' => 'ptr', 'Potri.002G185300' => 'ptr', 'Potri.006G086900' => 'ptr', 'Potri.008G151700' => 'ptr', 'Potri.009G033500' => 'ptr', 'Potri.010G089300' => 'ptr', 'Potri.014G110800' => 'ptr', 'Pp3c27_8130' => 'ppa', 'Pp3c6_27410' => 'ppa', 'PRCOL_00001659' => 'pco', 'PRCOL_00001927' => 'pco', 'PRCOL_00003649' => 'pco', 'Prupe.1G011600' => 'ppe', 'Prupe.3G000800' => 'ppe', 'Prupe.3G001100' => 'ppe', 'Prupe.6G072700' => 'ppe', 'Prupe.6G072800' => 'ppe', 'Prupe.6G257300' => 'ppe', 'Prupe.8G033000' => 'ppe', 'Psat0s2633g0080' => 'psa', 'Psat0s3396g0080' => 'psa', 'Psat0s3396g0200' => 'psa', 'Psat3g139080' => 'psa', 'Psat5g285080' => 'psa', 'Psat6g157760' => 'psa', 'Psat6g208440' => 'psa', 'Psat7g215320' => 'psa', 'Psat7g215400' => 'psa', 'Psat7g235600' => 'psa', 'Psat7g235760' => 'psa', 'PSO063G4603' => 'pso', 'PSO210G0182' => 'pso', 'PSO210G0196' => 'pso', 'PSO339G0394' => 'pso', 'PSO339G4127' => 'pso', 'PSO513G0064' => 'pso', 'PSO761G0079' => 'pso', 'QL01p031003' => 'qlo', 'QL01p031078' => 'qlo', 'QL06p003004' => 'qlo', 'QL07p048731' => 'qlo', 'QL09p037427' => 'qlo', 'RcHm_v2.0_Chr3g0466361' => 'rch', 'RcHm_v2.0_Chr3g0485571' => 'rch', 'RcHm_v2.0_Chr4g0416551' => 'rch', 'RcHm_v2.0_Chr5g0065831' => 'rch', 'Rhsim01G0230500' => 'rsi', 'Rhsim05G0194000' => 'rsi', 'Rhsim08G0250400' => 'rsi', 'Sabra02G0131000' => 'sbr', 'Sabra06G0066300' => 'sbr', 'Sabra08G0115500' => 'sbr', 'Sabra09G0023900' => 'sbr', 'Sabra10G0054000' => 'sbr', 'Sabra14G0081500' => 'sbr', 'Sabra16G0147100' => 'sbr', 'SalBow2G2957' => 'sbo', 'SalBow4G3320' => 'sbo', 'SalBow8G1894' => 'sbo', 'Sc07g0007950' => 'sci', 'Sc12g0001360' => 'sci', 'Sc13g0004330' => 'sci', 'Sc20g0005010' => 'sci', 'Sed0000361' => 'sed', 'Sed0001706' => 'sed', 'Sed0002422' => 'sed', 'Sed0004029' => 'sed', 'Sed0004602' => 'sed', 'Sed0004943' => 'sed', 'Sed0008646' => 'sed', 'Sed0023313' => 'sed', 'Sed0024843' => 'sed', 'SEGI_00081' => 'sgi', 'SEGI_00947' => 'sgi', 'SEGI_04046' => 'sgi', 'SEGI_06880' => 'sgi', 'SEGI_09736' => 'sgi', 'SEGI_12741' => 'sgi', 'SEGI_14530' => 'sgi', 'SEGI_20705' => 'sgi', 'SEGI_26088' => 'sgi', 'SEGI_28323' => 'sgi', 'SEGI_33343' => 'sgi', 'SGA_v2.0_scaffold126G33775' => 'sas', 'SGA_v2.0_scaffold2G01337' => 'sas', 'SGA_v2.0_scaffold38G15006' => 'sas', 'SGA_v2.0_scaffold39G15264' => 'sas', 'SGA_v2.0_scaffold453G51880' => 'sas', 'SHI12696' => 'shi', 'SMO367G1096' => 'smo', 'Solyc01g068630.3' => 'sly', 'Solyc05g011880.3' => 'sly', 'Solyc06g076300.3' => 'sly', 'Solyc09g010940.4' => 'sly', 'Solyc09g075890.3' => 'sly', 'Sopen01g030560' => 'spe', 'Sopen05g006630' => 'spe', 'Sopen06g032720' => 'spe', 'Sopen09g005660' => 'spe', 'Sopen09g030690' => 'spe', 'Sp4g14540' => 'spa', 'Sp4g20030' => 'spa', 'Sp5g01320' => 'spa', 'Sp6g21170' => 'spa', 'Sp6g21180' => 'spa', 'Sp6g21190' => 'spa', 'Sp6g40220' => 'spa', 'TAR362G0122' => 'tar', 'TAR362G1338' => 'tar', 'TAR369G0590' => 'tar', 'TAR371G0824' => 'tar', 'TAR622G1429' => 'tar', 'TAR623G0734' => 'tar', 'TAR625G0441' => 'tar', 'TAR629G0976' => 'tar', 'TAR633G1195' => 'tar', 'TAR636G2660' => 'tar', 'THA.LOC104799440' => 'tha', 'THA.LOC104800966' => 'tha', 'THA.LOC104806559' => 'tha', 'THA.LOC104810765' => 'tha', 'THA.LOC104816266' => 'tha', 'THA.LOC104817419' => 'tha', 'THA.LOC104827021' => 'tha', 'Thecc.01G327400' => 'tca', 'Thecc.04G229200' => 'tca', 'Thecc.05G037400' => 'tca', 'Thecc.09G318600' => 'tca', 'Thecc.09G318700' => 'tca', 'Thhalv10006238m.g' => 'esa', 'Thhalv10014321m.g' => 'esa', 'Thhalv10014335m.g' => 'esa', 'Thhalv10015826m.g' => 'esa', 'Thhalv10017107m.g' => 'esa', 'Thhalv10017180m.g' => 'esa', 'Thhalv10029339m.g' => 'esa', 'TPR.G1699' => 'tpr', 'TPR.G23609' => 'tpr', 'TPR.G3081' => 'tpr', 'TPR.G40397' => 'tpr', 'TPR.G5522' => 'tpr', 'TPR.G5618' => 'tpr', 'TPR.G5626' => 'tpr', 'TWI09G1632' => 'twi', 'TWI23G1230' => 'twi', 'TWI53G1064' => 'twi', 'TWI59G0751' => 'twi', 'TWI74G0947' => 'twi', 'TWI77G0337' => 'twi', 'TWI79G1254' => 'twi', 'unitig_0.g2341' => 'ugi', 'unitig_26.g10006' => 'ugi', 'unitig_26.g10008' => 'ugi', 'unitig_26.g9192' => 'ugi', 'vmacro14547' => 'vma', 'vmacro15333' => 'vma', 'vmacro18743' => 'vma', 'vmacro20166' => 'vma', 'VMungo0331G0523' => 'vmu', 'VMungo0331G1202' => 'vmu', 'VMungo0720G1228' => 'vmu', 'VMungo0720G1514' => 'vmu', 'VMungo1080G0169' => 'vmu', 'VMungo1127G1475' => 'vmu', 'VMungo1383G1208' => 'vmu', 'VMungo1383G1698' => 'vmu', 'Zm00001eb012270' => 'zma', 'Zm00001eb054100' => 'zma', 'Zm00001eb063350' => 'zma', 'Zm00001eb328560' => 'zma', 'Zm00001eb342820' => 'zma', 'Zm00001eb362210' => 'zma', 'Zm00001eb397730' => 'zma', 'Zm00001eb399750' => 'zma' ), 'gf_id' => 'HOM05D000959', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000959' ), 'data_identifier' => 'HOM05D000959', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000959', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '622', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p07100' => 'bna', 'A03p11720' => 'bna', 'A05p08300' => 'bna', 'A05p13380' => 'bna', 'A09p54130' => 'bna', 'A10p16690' => 'bna', 'A10p16700' => 'bna', 'A10p33390' => 'bna', 'Aa31LG10G16020' => 'aar', 'Aa31LG1G11810' => 'aar', 'Aa31LG1G11830' => 'aar', 'Aa31LG1G22510' => 'aar', 'Aa31LG5G4890' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5793' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2310' => 'aag', 'Actinidia08499' => 'ach', 'Actinidia11262' => 'ach', 'Actinidia23926' => 'ach', 'Actinidia34420' => 'ach', 'Actinidia36970' => 'ach', 'Ah.02g111220' => 'amhyb', 'Ah.15g097750' => 'amhyb', 'AL4G27500' => 'aly', 'AL6G11470' => 'aly', 'AL8G35950' => 'aly', 'AL8G35960' => 'aly', 'AL8G35970' => 'aly', 'Aqoxy1G00912' => 'aox', 'Aqoxy2G02253' => 'aox', 'Aqoxy2G02411' => 'aox', 'Aqoxy5G00485' => 'aox', 'arahy.Tifrunner.gnm1.ann1.BZ66YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0K8ID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DM4FUB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQ6BF2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HFV7XQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25JBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L0YNNV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MAKK6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P70IT9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP2Z6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V61LZZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YWP64R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3S9AI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z7PGHH' => 'arhy', 'AT2G32150' => 'ath', 'AT3G62040' => 'ath', 'AT5G02230' => 'ath', 'AT5G59480' => 'ath', 'AT5G59490' => 'ath', 'ATR0332G060' => 'atr', 'ATR0559G190' => 'atr', 'ATR0693G294' => 'atr', 'Atru.chr3.3975' => 'acertr', 'Atru.chr3.3976' => 'acertr', 'Atru.chr3.3977' => 'acertr', 'Atru.chr4.2498' => 'acertr', 'Atru.chr5.838' => 'acertr', 'Atru.chr8.1990' => 'acertr', 'Atru.chr8.1991' => 'acertr', 'Atru.chr8.1992' => 'acertr', 'AUR62001759' => 'cqu', 'AUR62009545' => 'cqu', 'AUR62010474' => 'cqu', 'AUR62025820' => 'cqu', 'AUR62030422' => 'cqu', 'AUR62033605' => 'cqu', 'AUR62038615' => 'cqu', 'AUR62041347' => 'cqu', 'BcaB01g04574' => 'bca', 'BcaB02g09263' => 'bca', 'BcaB02g10453' => 'bca', 'BcaB05g22513' => 'bca', 'BcaB08g36253' => 'bca', 'BcaB08g36254' => 'bca', 'BcaC01g06519' => 'bca', 'BcaC02g11889' => 'bca', 'BcaC03g14010' => 'bca', 'BcaC03g18439' => 'bca', 'BcaC04g19765' => 'bca', 'BcaC09g48432' => 'bca', 'BcaNung07302' => 'bca', 'BolC2t06040H' => 'bol', 'BolC2t07346H' => 'bol', 'BolC3t13817H' => 'bol', 'BolC4t22625H' => 'bol', 'BolC4t23297H' => 'bol', 'BolC8t51278H' => 'bol', 'BolC9t58050H' => 'bol', 'BolC9t58051H' => 'bol', 'BolC9t60163H' => 'bol', 'BraA02t04712Z' => 'bra', 'BraA02t05791Z' => 'bra', 'BraA03t10483Z' => 'bra', 'BraA05t19795Z' => 'bra', 'BraA05t20276Z' => 'bra', 'BraA09t40827Z' => 'bra', 'BraA10t43750Z' => 'bra', 'BraA10t43751Z' => 'bra', 'BraA10t45370Z' => 'bra', 'C02p00400' => 'bna', 'C02p12460' => 'bna', 'C03p13680' => 'bna', 'C04p10270' => 'bna', 'C04p17500' => 'bna', 'C08p37010' => 'bna', 'C09p51880' => 'bna', 'C09p51890' => 'bna', 'C09p74300' => 'bna', 'CAN.G179.26' => 'can', 'CAN.G3384.1' => 'can', 'CAN.G394.68' => 'can', 'CAN.G907.13' => 'can', 'CANSAT11G0012' => 'cansat', 'CANSAT25G1586' => 'cansat', 'CANSAT35G0735' => 'cansat', 'CANSAT54G0556' => 'cansat', 'CANSAT64G0356' => 'cansat', 'CANSAT78G2042' => 'cansat', 'CARHR125920' => 'chi', 'CARHR131910' => 'chi', 'CARHR172390' => 'chi', 'CARHR211140' => 'chi', 'CARHR285850' => 'chi', 'CARHR285860' => 'chi', 'Carub.0004s1347' => 'cru', 'Carub.0004s1960' => 'cru', 'Carub.0005s2880' => 'cru', 'Carub.0006s0107' => 'cru', 'Carub.0008s2015' => 'cru', 'Carub.0008s2016' => 'cru', 'Carub.0008s2017' => 'cru', 'Ca_01315_v3' => 'car', 'Ca_05063_v3' => 'car', 'Ca_10231_v3' => 'car', 'Ca_10913_v3' => 'car', 'Ca_19156_v3' => 'car', 'Ca_23644_v3' => 'car', 'Ca_26735_v3' => 'car', 'Cc01_g13130' => 'ccan', 'Cc02_g21690' => 'ccan', 'Cc03_g03600' => 'ccan', 'Cc06_g02510' => 'ccan', 'CDE02G1265' => 'cde', 'CDE05G0415' => 'cde', 'CDE08G1082' => 'cde', 'Cfa005780' => 'cfa', 'Cfa011522' => 'cfa', 'Cfa011523' => 'cfa', 'Cfa015627' => 'cfa', 'Cfa017359' => 'cfa', 'Ciclev10005687m.g' => 'ccl', 'Ciclev10012173m.g' => 'ccl', 'Ciclev10021621m.g' => 'ccl', 'Ciclev10028968m.g' => 'ccl', 'Ciclev10029907m.g' => 'ccl', 'CiPaw.01G164800' => 'cil', 'CiPaw.07G083700' => 'cil', 'CiPaw.07G127000' => 'cil', 'CiPaw.07G136900' => 'cil', 'CiPaw.08G081700' => 'cil', 'CiPaw.09G194600' => 'cil', 'CiPaw.10G146500' => 'cil', 'CiPaw.13G091500' => 'cil', 'CiPaw.13G091600' => 'cil', 'ClCG00G003390' => 'cla', 'ClCG01G007220' => 'cla', 'ClCG03G001370' => 'cla', 'ClCG04G008100' => 'cla', 'ClCG06G006110' => 'cla', 'ClCG06G006130' => 'cla', 'ClCG10G021210' => 'cla', 'COL.COLO4_07648' => 'col', 'COL.COLO4_07650' => 'col', 'COL.COLO4_07651' => 'col', 'COL.COLO4_14780' => 'col', 'COL.COLO4_18546' => 'col', 'COL.COLO4_18547' => 'col', 'COL.COLO4_23103' => 'col', 'COL.COLO4_30419' => 'col', 'COL.COLO4_34232' => 'col', 'Cpa.g.sc169.20' => 'cpa', 'Cpa.g.sc57.45' => 'cpa', 'Cpa.g.sc58.124' => 'cpa', 'Cpa.g.sc58.125' => 'cpa', 'Cpa.g.sc81.118' => 'cpa', 'Cpa.g.sc81.119' => 'cpa', 'Cre12.g524700' => 'cre', 'CsaV3_1G034430' => 'csa', 'CsaV3_1G034440' => 'csa', 'CsaV3_1G034450' => 'csa', 'CsaV3_3G034830' => 'csa', 'CsaV3_4G025090' => 'csa', 'CsaV3_5G018660' => 'csa', 'CsaV3_6G038160' => 'csa', 'CSS0003447' => 'camsi', 'CSS0017840' => 'camsi', 'CSS0019260' => 'camsi', 'CSS0040375' => 'camsi', 'CSS0042533' => 'camsi', 'DCAR_005960' => 'dca', 'DCAR_012104' => 'dca', 'DCAR_012105' => 'dca', 'DCAR_012293' => 'dca', 'DCAR_015632' => 'dca', 'DCAR_024602' => 'dca', 'DCAR_028752' => 'dca', 'Dinv06261' => 'din', 'Dinv13982' => 'din', 'Dinv17029' => 'din', 'Dinv18463' => 'din', 'Dinv33181' => 'din', 'Dinv35585' => 'din', 'Dinv37161' => 'din', 'Dinv42977' => 'din', 'Dinv43122' => 'din', 'Dinv44517' => 'din', 'Duzib093G0256' => 'dzi', 'Duzib106G1254' => 'dzi', 'Duzib128G1789' => 'dzi', 'Duzib133G0633' => 'dzi', 'Duzib138G0510' => 'dzi', 'Duzib150G1084' => 'dzi', 'Duzib168G0488' => 'dzi', 'Duzib168G1523' => 'dzi', 'Duzib170G0133' => 'dzi', 'ECA234G1433' => 'eca', 'ECA236G1432' => 'eca', 'ECA236G2256' => 'eca', 'ECA236G2365' => 'eca', 'ECA236G4830' => 'eca', 'ECA248G1505' => 'eca', 'EL10Ac3g06431' => 'bvu', 'EL10Ac5g12577' => 'bvu', 'EL10Ac6g13533' => 'bvu', 'EL10Ac7g16045' => 'bvu', 'Eucgr.A01281' => 'egr', 'Eucgr.B02326' => 'egr', 'Eucgr.H03532' => 'egr', 'Eucgr.K00553' => 'egr', 'Eucgr.K03116' => 'egr', 'FAN02G3963' => 'fan', 'FAN05G0438' => 'fan', 'FAN09G2434' => 'fan', 'FAN12G3984' => 'fan', 'FAN14G0798' => 'fan', 'FAN17G0652' => 'fan', 'FAN19G1988' => 'fan', 'FAN22G0632' => 'fan', 'FAN23G0387' => 'fan', 'FAN26G1323' => 'fan', 'FAN28G0666' => 'fan', 'FvH4_1g26080' => 'fve', 'FvH4_3g36780' => 'fve', 'FvH4_4g15270' => 'fve', 'FvH4_6g13490' => 'fve', 'Glyma.01G098700' => 'gma', 'Glyma.03G065900' => 'gma', 'Glyma.03G073754' => 'gma', 'Glyma.03G073758' => 'gma', 'Glyma.03G083200' => 'gma', 'Glyma.03G225500' => 'gma', 'Glyma.05G037766' => 'gma', 'Glyma.07G133500' => 'gma', 'Glyma.10G139400' => 'gma', 'Glyma.10G248900' => 'gma', 'Glyma.11G137800' => 'gma', 'Glyma.12G061300' => 'gma', 'Glyma.13G337900' => 'gma', 'Glyma.15G036600' => 'gma', 'Glyma.18G182800' => 'gma', 'Glyma.19G222500' => 'gma', 'Glyma.20G144800' => 'gma', 'Gohir.A01G222000' => 'ghi', 'Gohir.A03G044000' => 'ghi', 'Gohir.A03G044100' => 'ghi', 'Gohir.A04G083100' => 'ghi', 'Gohir.A07G127200' => 'ghi', 'Gohir.A07G132400' => 'ghi', 'Gohir.A08G000700' => 'ghi', 'Gohir.A11G327300' => 'ghi', 'Gohir.D01G211500' => 'ghi', 'Gohir.D03G123400' => 'ghi', 'Gohir.D03G123500' => 'ghi', 'Gohir.D04G121800' => 'ghi', 'Gohir.D07G131500' => 'ghi', 'Gohir.D07G136600' => 'ghi', 'Gohir.D08G011600' => 'ghi', 'Gohir.D11G346200' => 'ghi', 'Gorai.001G142800' => 'gra', 'Gorai.001G148700' => 'gra', 'Gorai.002G257300' => 'gra', 'Gorai.003G130000' => 'gra', 'Gorai.003G130100' => 'gra', 'Gorai.004G005300' => 'gra', 'Gorai.007G376500' => 'gra', 'Gorai.012G104700' => 'gra', 'GSVIVG01017946001' => 'vvi', 'GSVIVG01024928001' => 'vvi', 'GSVIVG01028227001' => 'vvi', 'GSVIVG01034151001' => 'vvi', 'HanXRQChr05g0135031' => 'han', 'HanXRQChr05g0135041' => 'han', 'HanXRQChr05g0140021' => 'han', 'HanXRQChr06g0178981' => 'han', 'HanXRQChr07g0188251' => 'han', 'HanXRQChr08g0235311' => 'han', 'HanXRQChr09g0271011' => 'han', 'HanXRQChr10g0293321' => 'han', 'HanXRQChr13g0388171' => 'han', 'Haze_00916' => 'cav', 'Haze_05063' => 'cav', 'Haze_20814' => 'cav', 'Haze_24128' => 'cav', 'Hma1.2p1_0745F.1_g212010' => 'hma', 'Hma1.2p1_0757F.1_g213260' => 'hma', 'Hma1.2p1_0936F.1_g238840' => 'hma', 'Hma1.2p1_1735F.1_g299890' => 'hma', 'Hma1.2p1_1861F.1_g305685' => 'hma', 'HPP92_003397' => 'vpl', 'HPP92_012597' => 'vpl', 'HPP92_015520' => 'vpl', 'HPP92_015539' => 'vpl', 'HPP92_020373' => 'vpl', 'Hund04938' => 'sun', 'Hund10677' => 'sun', 'Hund11033' => 'sun', 'Hund12155' => 'sun', 'Lalb_Chr01g0022551' => 'lal', 'Lalb_Chr03g0042341' => 'lal', 'Lalb_Chr07g0192931' => 'lal', 'Lalb_Chr12g0209551' => 'lal', 'Lalb_Chr19g0125251' => 'lal', 'Lalb_Chr19g0137891' => 'lal', 'Lalb_Chr21g0304641' => 'lal', 'Lalb_Chr21g0309881' => 'lal', 'Lj1A5T12' => 'lonja', 'Lj1C148G10' => 'lonja', 'Lj2A93T83' => 'lonja', 'Lj3A738G68' => 'lonja', 'Lj3C966T1' => 'lonja', 'Lj3g0018958' => 'lja', 'Lj3g0021831' => 'lja', 'Lj3g0025443' => 'lja', 'Lj4g0026809' => 'lja', 'Lj5g0012558' => 'lja', 'Lj5g0021586' => 'lja', 'Lsat_1_v5_gn_5_156840' => 'lsa', 'Lsat_1_v5_gn_8_73460' => 'lsa', 'Lsat_1_v5_gn_8_73481' => 'lsa', 'Lsat_1_v5_gn_9_31601' => 'lsa', 'Lsat_1_v5_gn_9_77320' => 'lsa', 'Manes.01G171300' => 'mes', 'Manes.01G171400' => 'mes', 'Manes.01G236100' => 'mes', 'Manes.02G130500' => 'mes', 'Manes.02G130600' => 'mes', 'Manes.03G180200' => 'mes', 'Manes.05G007000' => 'mes', 'Manes.08G084400' => 'mes', 'Manes.09G092600' => 'mes', 'Manes.15G027900' => 'mes', 'MBI04_g40948_MAGBIO' => 'mbi', 'MBI14_g12123_MAGBIO' => 'mbi', 'MBI18_g28915_MAGBIO' => 'mbi', 'MCO09G053' => 'mco', 'MCO11G782' => 'mco', 'MCO15G215' => 'mco', 'MD03G1088500' => 'mdo', 'MD03G1088600' => 'mdo', 'MD04G1130800' => 'mdo', 'MD09G1291700' => 'mdo', 'MD11G1097500' => 'mdo', 'MD11G1097600' => 'mdo', 'MD12G1143900' => 'mdo', 'MD13G1191400' => 'mdo', 'MD16G1191500' => 'mdo', 'Medtr1g085570' => 'mtr', 'Medtr1g104610' => 'mtr', 'Medtr2g097520' => 'mtr', 'Medtr4g021800' => 'mtr', 'Medtr4g021825' => 'mtr', 'Medtr4g064270' => 'mtr', 'Medtr4g064380' => 'mtr', 'Medtr7g062150' => 'mtr', 'MELO3C003138.2' => 'cme', 'MELO3C005187.2' => 'cme', 'MELO3C009252.2' => 'cme', 'MELO3C014481.2' => 'cme', 'MELO3C020616.2' => 'cme', 'MELO3C020617.2' => 'cme', 'MELO3C020618.2' => 'cme', 'Migut.G00328' => 'egut', 'Migut.J00320' => 'egut', 'Migut.L01000' => 'egut', 'Migut.L01953' => 'egut', 'MSTRG.10253' => 'ama', 'MSTRG.19077' => 'ama', 'MSTRG.26780' => 'ama', 'MSTRG.4023' => 'ama', 'MSTRG.5655' => 'ama', 'MSTRG.9992' => 'ama', 'Nitab4.5_0000043g0310' => 'nta', 'Nitab4.5_0000463g0080' => 'nta', 'Nitab4.5_0000705g0170' => 'nta', 'Nitab4.5_0001326g0060' => 'nta', 'Nitab4.5_0001628g0030' => 'nta', 'Nitab4.5_0002103g0110' => 'nta', 'Nitab4.5_0002946g0030' => 'nta', 'Nitab4.5_0004639g0030' => 'nta', 'Nn2g11149' => 'nnu', 'Nn2g13389' => 'nnu', 'Nn4g25326' => 'nnu', 'Nn4g26290' => 'nnu', 'Nn5g29865' => 'nnu', 'Oeu004163.1' => 'oeu', 'Oeu006901.1' => 'oeu', 'Oeu010096.1' => 'oeu', 'Oeu024340.1' => 'oeu', 'Oeu048369.1' => 'oeu', 'Os01g0973000' => 'osa', 'Os03g0273800' => 'osa', 'Os03g0701200' => 'osa', 'Os03g0834050' => 'osa', 'Os07g0634400' => 'osa', 'Peaxi162Scf00092g01414' => 'pax', 'Peaxi162Scf00165g00818' => 'pax', 'Peaxi162Scf00309g00516' => 'pax', 'Peaxi162Scf00774g00218' => 'pax', 'PGR004G1824' => 'pgr', 'PGR004G2606' => 'pgr', 'PGR031G2716' => 'pgr', 'PGR102G2460' => 'pgr', 'PGR142G2599' => 'pgr', 'PGSC0003DMG400000843' => 'stu', 'PGSC0003DMG400008829' => 'stu', 'PGSC0003DMG400030418' => 'stu', 'PGSC0003DMG400031834' => 'stu', 'PGSC0003DMG401028300' => 'stu', 'PGSC0003DMG402028300' => 'stu', 'Phvul.001G219300' => 'pvu', 'Phvul.007G056000' => 'pvu', 'Phvul.007G208000' => 'pvu', 'Phvul.008G119500' => 'pvu', 'Phvul.010G011200' => 'pvu', 'Phvul.010G014800' => 'pvu', 'Phvul.011G062900' => 'pvu', 'Phvul.L007043' => 'pvu', 'Potri.001G242300' => 'ptr', 'Potri.002G185300' => 'ptr', 'Potri.006G086900' => 'ptr', 'Potri.008G151700' => 'ptr', 'Potri.009G033500' => 'ptr', 'Potri.010G089300' => 'ptr', 'Potri.014G110800' => 'ptr', 'Pp3c27_8130' => 'ppa', 'Pp3c6_27410' => 'ppa', 'PRCOL_00001659' => 'pco', 'PRCOL_00001927' => 'pco', 'PRCOL_00003649' => 'pco', 'Prupe.1G011600' => 'ppe', 'Prupe.3G000800' => 'ppe', 'Prupe.3G001100' => 'ppe', 'Prupe.6G072700' => 'ppe', 'Prupe.6G072800' => 'ppe', 'Prupe.6G257300' => 'ppe', 'Prupe.8G033000' => 'ppe', 'Psat0s2633g0080' => 'psa', 'Psat0s3396g0080' => 'psa', 'Psat0s3396g0200' => 'psa', 'Psat3g139080' => 'psa', 'Psat5g285080' => 'psa', 'Psat6g157760' => 'psa', 'Psat6g208440' => 'psa', 'Psat7g215320' => 'psa', 'Psat7g215400' => 'psa', 'Psat7g235600' => 'psa', 'Psat7g235760' => 'psa', 'PSO063G4603' => 'pso', 'PSO210G0182' => 'pso', 'PSO210G0196' => 'pso', 'PSO339G0394' => 'pso', 'PSO339G4127' => 'pso', 'PSO513G0064' => 'pso', 'PSO761G0079' => 'pso', 'QL01p031003' => 'qlo', 'QL01p031078' => 'qlo', 'QL06p003004' => 'qlo', 'QL07p048731' => 'qlo', 'QL09p037427' => 'qlo', 'RcHm_v2.0_Chr3g0466361' => 'rch', 'RcHm_v2.0_Chr3g0485571' => 'rch', 'RcHm_v2.0_Chr4g0416551' => 'rch', 'RcHm_v2.0_Chr5g0065831' => 'rch', 'Rhsim01G0230500' => 'rsi', 'Rhsim05G0194000' => 'rsi', 'Rhsim08G0250400' => 'rsi', 'Sabra02G0131000' => 'sbr', 'Sabra06G0066300' => 'sbr', 'Sabra08G0115500' => 'sbr', 'Sabra09G0023900' => 'sbr', 'Sabra10G0054000' => 'sbr', 'Sabra14G0081500' => 'sbr', 'Sabra16G0147100' => 'sbr', 'SalBow2G2957' => 'sbo', 'SalBow4G3320' => 'sbo', 'SalBow8G1894' => 'sbo', 'Sc07g0007950' => 'sci', 'Sc12g0001360' => 'sci', 'Sc13g0004330' => 'sci', 'Sc20g0005010' => 'sci', 'Sed0000361' => 'sed', 'Sed0001706' => 'sed', 'Sed0002422' => 'sed', 'Sed0004029' => 'sed', 'Sed0004602' => 'sed', 'Sed0004943' => 'sed', 'Sed0008646' => 'sed', 'Sed0023313' => 'sed', 'Sed0024843' => 'sed', 'SEGI_00081' => 'sgi', 'SEGI_00947' => 'sgi', 'SEGI_04046' => 'sgi', 'SEGI_06880' => 'sgi', 'SEGI_09736' => 'sgi', 'SEGI_12741' => 'sgi', 'SEGI_14530' => 'sgi', 'SEGI_20705' => 'sgi', 'SEGI_26088' => 'sgi', 'SEGI_28323' => 'sgi', 'SEGI_33343' => 'sgi', 'SGA_v2.0_scaffold126G33775' => 'sas', 'SGA_v2.0_scaffold2G01337' => 'sas', 'SGA_v2.0_scaffold38G15006' => 'sas', 'SGA_v2.0_scaffold39G15264' => 'sas', 'SGA_v2.0_scaffold453G51880' => 'sas', 'SHI12696' => 'shi', 'SMO367G1096' => 'smo', 'Solyc01g068630.3' => 'sly', 'Solyc05g011880.3' => 'sly', 'Solyc06g076300.3' => 'sly', 'Solyc09g010940.4' => 'sly', 'Solyc09g075890.3' => 'sly', 'Sopen01g030560' => 'spe', 'Sopen05g006630' => 'spe', 'Sopen06g032720' => 'spe', 'Sopen09g005660' => 'spe', 'Sopen09g030690' => 'spe', 'Sp4g14540' => 'spa', 'Sp4g20030' => 'spa', 'Sp5g01320' => 'spa', 'Sp6g21170' => 'spa', 'Sp6g21180' => 'spa', 'Sp6g21190' => 'spa', 'Sp6g40220' => 'spa', 'TAR362G0122' => 'tar', 'TAR362G1338' => 'tar', 'TAR369G0590' => 'tar', 'TAR371G0824' => 'tar', 'TAR622G1429' => 'tar', 'TAR623G0734' => 'tar', 'TAR625G0441' => 'tar', 'TAR629G0976' => 'tar', 'TAR633G1195' => 'tar', 'TAR636G2660' => 'tar', 'THA.LOC104799440' => 'tha', 'THA.LOC104800966' => 'tha', 'THA.LOC104806559' => 'tha', 'THA.LOC104810765' => 'tha', 'THA.LOC104816266' => 'tha', 'THA.LOC104817419' => 'tha', 'THA.LOC104827021' => 'tha', 'Thecc.01G327400' => 'tca', 'Thecc.04G229200' => 'tca', 'Thecc.05G037400' => 'tca', 'Thecc.09G318600' => 'tca', 'Thecc.09G318700' => 'tca', 'Thhalv10006238m.g' => 'esa', 'Thhalv10014321m.g' => 'esa', 'Thhalv10014335m.g' => 'esa', 'Thhalv10015826m.g' => 'esa', 'Thhalv10017107m.g' => 'esa', 'Thhalv10017180m.g' => 'esa', 'Thhalv10029339m.g' => 'esa', 'TPR.G1699' => 'tpr', 'TPR.G23609' => 'tpr', 'TPR.G3081' => 'tpr', 'TPR.G40397' => 'tpr', 'TPR.G5522' => 'tpr', 'TPR.G5618' => 'tpr', 'TPR.G5626' => 'tpr', 'TWI09G1632' => 'twi', 'TWI23G1230' => 'twi', 'TWI53G1064' => 'twi', 'TWI59G0751' => 'twi', 'TWI74G0947' => 'twi', 'TWI77G0337' => 'twi', 'TWI79G1254' => 'twi', 'unitig_0.g2341' => 'ugi', 'unitig_26.g10006' => 'ugi', 'unitig_26.g10008' => 'ugi', 'unitig_26.g9192' => 'ugi', 'vmacro14547' => 'vma', 'vmacro15333' => 'vma', 'vmacro18743' => 'vma', 'vmacro20166' => 'vma', 'VMungo0331G0523' => 'vmu', 'VMungo0331G1202' => 'vmu', 'VMungo0720G1228' => 'vmu', 'VMungo0720G1514' => 'vmu', 'VMungo1080G0169' => 'vmu', 'VMungo1127G1475' => 'vmu', 'VMungo1383G1208' => 'vmu', 'VMungo1383G1698' => 'vmu', 'Zm00001eb012270' => 'zma', 'Zm00001eb054100' => 'zma', 'Zm00001eb063350' => 'zma', 'Zm00001eb328560' => 'zma', 'Zm00001eb342820' => 'zma', 'Zm00001eb362210' => 'zma', 'Zm00001eb397730' => 'zma', 'Zm00001eb399750' => 'zma' ) $gf_id = 'HOM05D000959' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000959' ) $data_identifier = 'HOM05D000959' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 5, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 5, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 10, 'mbi' => (int) 3, 'mco' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 2, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 3, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 11, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399750' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1